Genbank ID Gene name Gene category Sub-category1 Sub-category2 Organism Lineage 3200a 3200b 3200c 3400a 3400b 3400c 3600a 3600b 3600c 3800a 3800b 3800c 67540332 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 8.28931196 8.134622499 8.10318343 8.219454371 8.26829749 7.855106951 8.067975187 8.337187563 7.872296008 8.291225967 7.886385515 184198267 nmoA Organic Remediation Aromatics Nitoaromatics Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.087832901 8.120969051 8.42555081 8.105122153 7.976918621 7.902632911 7.899445472 7.992965245 8.356434442 7.89539351 7.905254398 8.002919839 142688 endochitinase Carbon cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 8.955659829 9.042284427 9.017652311 8.693797072 8.550067848 8.56099969 8.603453019 8.829867641 8.465310619 8.784326001 8.802792706 8.974329406 205351019 narG Nitrogen Denitrification Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 8.369037027 8.351873562 8.636381239 7.618387078 7.387881333 7.593642153 7.360713187 7.089449179 7.368930818 7.490639678 7.569232788 84501125 pstB Stress Phosphate limitation Oceanicola batsensis HTCC2597 8.407195953 8.309422954 7.505700672 7.841962562 8.342051371 8.498189292 7.63570267 8.590452973 8.029799901 8.132377862 8.061926116 209497899 tfdA Organic Remediation Aromatics Chlorinated aromatics Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 9.08344959 9.298939864 9.091403267 8.684824062 8.900884463 9.134139727 9.384780889 8.853359243 9.416444009 9.022675022 8.850470159 8.854292263 160896251 pimF Organic Remediation Aromatics Aromatic carboxylic acid Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 9.375633268 8.789254705 8.791034695 9.585557591 9.154714197 8.777671192 9.318215172 9.153802115 9.427828095 9.041363585 8.765122417 3021322 fnr Stress Oxygen stress Bradyrhizobium japonicum 9.271405142 9.509255182 9.340339135 8.467871787 8.494163393 8.633944905 9.08534376 8.64075713 9.20720743 8.752479728 8.50309286 8.850623796 167054071 toxin virulence toxin Yersinia pestis biovar Mediaevalis str. K1973002 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia pestis; 7.638710144 7.82601965 7.726802685 7.197882224 7.758930135 7.702276951 7.89463441 8.233134852 7.519931191 88814759 SMR_antibiotics Antibiotic resistance transporter marine actinobacterium PHSC20C1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 9.133161026 8.985011188 8.873461181 9.005744939 8.935513029 8.985178704 8.854048571 9.122105193 9.138587595 9.268886196 9.313262117 9.062926536 154508996 obgE Stress Radiation stress Actinomyces odontolyticus ATCC 17982 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces odontolyticus; 8.665365684 8.670599867 8.33705144 8.707156256 8.886424382 8.605725331 8.683171282 8.634450728 8.77615281 9.014066637 8.640629819 27352759 nhh Organic Remediation Aromatics Nitoaromatics Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.998779622 8.587535238 8.743796351 8.730199461 8.443467593 8.423224641 8.270998739 8.583022419 8.283785946 8.283737031 8.544761935 187719962 CopA Metal Resistance Copper Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8.652406315 8.473699718 8.228717014 8.675457777 8.39791919 8.591769299 8.431284582 8.523278826 8.289824744 77361354 sigma_24 Stress Sigma factors Pseudoalteromonas haloplanktis TAC125 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas haloplanktis; 9.28812936 9.175993852 9.266953955 8.922457775 8.635453013 8.619569059 8.273299475 8.337388651 8.358836479 8.478407124 8.93623071 229324112 pstB Stress Phosphate limitation Rhodococcus erythropolis SK121 7.383665291 7.312053138 8.152376047 7.63621977 7.672210052 189425459 bco Organic Remediation Aromatics Aromatic carboxylic acid Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 9.150096193 9.259820633 8.984511224 8.983158495 8.788710961 8.809983533 8.547317427 8.98193184 8.80832687 8.863550825 8.89128438 8.909410423 56964354 pstA Stress Phosphate limitation Bacillus clausii KSM-K16 8.140127434 8.015546717 7.299983325 7.281994812 7.198547593 7.142885849 6.651585834 7.676754341 7.240066607 7.33892143 239801383 sigma_38 Stress Sigma factors Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 9.201558601 9.307639545 9.147709803 8.652181524 8.662562735 8.914995467 9.218421116 8.976534862 9.291008029 8.729996541 8.646048837 8.745927143 77362680 Catechol Organic Remediation Aromatics Other aromatics Rhodococcus sp. AN-22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.34427626 8.364295028 8.280626264 7.990190427 7.98080127 8.074002867 8.193924465 8.211786793 8.057937803 8.075322896 8.160392654 171060286 ppx Phosphorus Phosphorus utilization Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 9.361244888 9.348190963 9.480035296 9.17196175 9.482601032 9.703898155 9.289734846 9.364315628 9.389936789 9.05931307 9.504235974 9.23337008 158312217 pstC Stress Phosphate limitation Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 9.499939855 9.32165561 9.465162731 9.55502667 9.027250731 8.988205008 9.102584419 8.850732723 9.261891546 9.47236961 9.414785879 206569205 tutFDG Organic Remediation Aromatics BTEX and related aromatics Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 8.393655189 8.285001843 7.647775147 7.706537371 7.528256552 7.281611459 7.408488152 7.62841568 7.42892996 7.157160446 7.637235265 239795113 glnA Stress Nitrogen limitation Desulfovibrio magneticus RS-1 8.043779913 8.066321795 7.442447161 7.807080751 7.876695689 7.70636401 7.037355693 8.041182959 7.784648056 7.596256163 7.982005287 119191930 glx Carbon cycling Carbon degradation Lignin Coccidioides immitis RS superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides immitis; 8.235460295 8.491832406 8.517105359 7.595234817 8.141188306 8.164524485 8.225708785 7.025563906 8.165971028 7.489615345 7.792717634 7.422330703 118424404 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.865036512 7.822615206 7.794907205 7.378704146 7.951765302 7.812946818 7.971853828 8.028660261 7.672128016 116700358 sigma_24 Stress Sigma factors Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 8.979776489 8.910154044 9.069445551 8.876285654 8.680376033 8.388103456 8.825296601 9.142002414 8.496932601 8.919540928 8.700435097 8.669512568 71367082 pcc Carbon cycling Carbon fixation Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.741686144 9.242881667 9.086373342 8.587974557 8.477198265 9.097410564 9.246122662 8.820467028 9.084324538 8.522286182 8.488181493 8.860887827 71402608 nasA Nitrogen Assimilatory N reduction Synechococcus sp. UW92 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.809974245 8.805865118 8.865148378 8.37627231 8.45629849 8.690813451 9.038086041 7.87925076 8.856690846 8.366208282 8.175284569 8.144611317 21221778 ppx Phosphorus Phosphorus utilization Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 9.927006224 9.906424219 9.883382379 9.129997597 9.424998229 9.509596372 9.215182162 9.585311094 9.539041104 9.776137094 9.481226531 119898765 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8.786288905 8.849383064 8.87904916 8.998293266 8.987437542 8.518954389 9.136143401 9.477846312 9.189076233 9.228102869 8.718308688 227498031 narH Stress Oxygen limitation Actinomyces urogenitalis DSM 15434 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces urogenitalis; 9.042888332 8.893569986 9.029084514 8.710081817 8.532402639 8.381196088 8.514801764 8.829455614 8.483738328 8.69418026 8.641920439 8.815542996 222479925 amyA Carbon cycling Carbon degradation Starch Halorubrum lacusprofundi ATCC 49239 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 9.512546512 9.336615995 9.43792218 9.156286506 9.433194293 8.95978499 8.958208422 8.9465047 9.015478059 9.104715081 9.263000885 257796670 hrcA Stress Heat shock Desulfohalobium retbaense DSM 5692 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium;species:Desulfohalobium retbaense; 9.171931693 8.691618647 8.424741285 9.089369019 8.962996545 8.521331332 9.209572761 9.094420511 8.690054967 8.98581333 8.899524392 224369938 pstS Stress Phosphate limitation Desulfobacterium autotrophicum HRM2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium;species:Desulfobacterium autotrophicum; 9.447263264 9.256961438 8.460615146 9.238626503 8.399586891 269096354 cellobiase Carbon cycling Carbon degradation Cellulose Sanguibacter keddieii DSM 10542 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Sanguibacteraceae;genus:Sanguibacter;species:Sanguibacter keddieii; 8.229687953 8.380437258 8.27306866 8.617219535 8.378440527 8.104716279 8.492229477 8.492307223 8.422600698 8.332982997 8.49179443 8.057814035 194292809 norB Nitrogen Denitrification Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 8.822462553 8.308965428 8.219368907 8.747885263 8.297431041 8.516559599 7.994006738 8.525643132 8.06265279 8.608090202 8.248414691 124521814 CadA Metal Resistance Cadmium Bacillus coagulans 36D1 9.342863891 9.415324185 9.479940797 8.558784114 8.461063724 8.53230899 8.898810147 8.337525778 8.811430833 8.614407352 8.489987306 8.79897734 118171466 BADH Organic Remediation Aromatics Other aromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.623765364 8.68610995 8.702488189 8.254808772 8.41578413 8.669959137 9.195039051 8.344789626 9.095094904 8.42750453 8.555090637 8.595772811 115374468 pcpB Organic Remediation Herbicides related compound Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 9.588864741 9.491653332 9.483876814 9.662152266 9.470634402 9.234504879 9.573595973 9.454298731 9.342474738 9.247593053 9.266228911 9.505035645 89897264 narI Stress Oxygen limitation Desulfitobacterium hafniense Y51 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 8.366983866 8.016416672 7.392618327 7.506412981 7.320332996 6.865576082 7.380894101 7.302976412 7.126906952 7.040924509 242399862 proV Stress Osmotic stress Thermococcus sibiricus MM 739 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus sibiricus; 8.719174044 9.019862038 9.127751128 8.473668011 8.453893844 8.280115565 7.882197839 8.001364367 8.197367489 8.311243414 8.422843863 238721552 phoA Stress Phosphate limitation Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 8.910756397 8.781467569 8.879123837 8.801109285 8.976284 8.909622394 8.327019347 8.999148733 8.649107445 9.175787798 9.322009267 8.186358767 240171888 pstA Stress Phosphate limitation Mycobacterium kansasii ATCC 12478 8.723525795 8.359884392 8.30095042 7.96639188 8.066137466 8.091180024 7.951776585 8.143448088 8.235752529 8.315807604 8.387799432 8.171069727 170290533 pstC Stress Phosphate limitation Candidatus Korarchaeum cryptofilum OPF8 superkingdom:Archaea;phylum:Korarchaeota;genus:Candidatus Korarchaeum;species:Candidatus Korarchaeum cryptofilum; 8.505289515 8.266532289 8.617405463 7.529008389 7.54434892 7.550773559 7.31651943 7.430010283 7.400771945 7.208690847 7.979893249 56479167 ppk Phosphorus Phosphorus utilization Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 9.638151458 9.043259109 8.914479527 9.342048207 8.950646406 8.563936353 9.240616422 9.224370891 9.191383372 8.908602168 8.880933199 8.660523547 255921195 sigma_24 Stress Sigma factors Actinosynnema mirum DSM 43827 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinosynnemataceae;genus:Actinosynnema;species:Actinosynnema mirum; 8.418239871 8.634673642 8.887766621 8.706686414 8.390872255 8.593773249 9.052301565 8.378778568 8.583226067 8.406536971 8.772587373 78459398 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.879220274 8.346790939 8.878704423 8.423005824 8.305810369 8.207872935 7.830292447 7.730577476 7.927441887 7.951736759 8.327747097 126737435 nreB Metal Resistance Nickel Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 9.149525813 9.073407769 9.224520965 8.920559396 8.712637615 8.587732537 8.266318629 8.2990114 8.494679445 8.3144777 8.502641378 8.768235797 113866210 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 9.647544894 9.173946383 9.221482648 9.181637785 9.024509436 8.719342328 9.350017078 9.232339281 9.231190444 9.0870149 8.906478048 8.898170257 38427012 narG Nitrogen Denitrification uncultured bacterium 10.99587383 10.90760859 9.719312747 10.21625833 10.25251353 39935214 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.624098876 8.764068674 8.520375296 8.205217368 8.598325871 8.533176522 8.549522712 8.483714484 8.461253241 8.599880037 8.553485452 229375154 SMR_antibiotics Antibiotic resistance transporter Helicobacter winghamensis ATCC BAA-430 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter winghamensis; 8.581973626 8.858059982 8.716427744 8.221837393 8.17458393 8.100591155 8.057748969 7.790146657 8.236827497 7.762057321 7.720443769 8.305487908 78517769 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.526656759 8.751436894 8.594044853 8.648838033 8.524262458 8.476497257 8.600607439 8.719698534 8.673731994 8.871875245 8.565254459 8.533360565 259503726 xylA Carbon cycling Carbon degradation Hemicellulose Lactobacillus antri DSM 16041 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus antri; 8.128595589 8.195763495 8.298479327 7.926070868 7.594233053 7.780481826 7.309608845 7.71203879 7.662806367 8.04842155 8.118168511 8.020680102 91696245 pimF Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 8.931719441 8.849543004 8.961046598 8.197646016 7.937869958 8.137016527 8.100790814 8.055924528 8.238315278 8.001350309 8.291505797 8.371685972 268317378 pstB Stress Phosphate limitation Rhodothermus marinus DSM 4252 9.0828511 8.836239589 8.758442365 8.965044941 8.852248552 8.745312037 8.991598401 8.99685243 8.850391749 8.958409827 8.980227452 9.04919013 77456479 nmoA Organic Remediation Aromatics Nitoaromatics Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.11103268 8.138754442 8.207239875 8.127605221 7.578111744 7.740696043 8.47611186 8.084782864 7.823945213 7.981372545 7.766908122 107784967 dsrA Sulphur sulfite reductase Desulfovibrio desulfuricans superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 8.892061769 8.962823246 8.718588369 7.972963335 8.088487604 8.071349298 8.409492283 8.082724384 8.290802435 8.169255186 8.130777686 8.017897516 86137745 narH Stress Oxygen limitation Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.840041653 8.762277653 9.014255733 8.872211038 8.732027008 8.589105293 8.850833584 9.278264452 8.987383182 9.05197956 8.86090314 9.118083969 94311053 sigma_38 Stress Sigma factors Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 9.424767991 9.348391085 9.10549136 9.390993763 9.452652288 9.182386329 9.339832066 10.06888496 9.674573923 9.681596042 9.638097083 9.611972216 161019207 bphA Organic Remediation Aromatics Polycyclic aromatics Dyella ginsengisoli 8.269856596 8.228036558 8.320020209 8.264264298 7.892042158 8.256964849 8.548398803 8.4726815 8.146510646 7.834742834 35210571 pstB Stress Phosphate limitation Gloeobacter violaceus PCC 7421 9.092222345 8.965260756 9.11361188 8.425774373 8.496877234 8.721949948 8.376454257 8.315246278 8.691911769 8.249403818 8.263856263 8.564826194 186465476 P450 Energy process Energy process Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 8.722522175 8.71544041 8.568326682 8.424917787 9.035209725 8.692186216 8.701890323 8.805678538 8.82926049 151425706 pstB Stress Phosphate limitation Sulfurovum sp. NBC37-1 8.671684095 8.718168971 8.641705146 8.303637945 8.094115087 8.120856211 8.09514624 7.912126295 8.031998925 7.59279392 8.27687801 76666802 APS_AprA Sulphur adenylylsulfate reductase uncultured sulfate-reducing bacterium 8.298280506 8.396666053 8.489523649 7.94538651 7.978705048 7.868649166 7.91421956 7.729063296 8.153289754 7.956017121 7.647253503 7.850626397 10580737 atzA Organic Remediation Herbicides related compound Halobacterium sp. NRC-1 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halobacterium;species:Halobacterium salinarum; 9.033552099 9.317475929 9.104973623 8.289608318 8.549238263 9.423605764 9.500493929 8.955473599 9.065729475 8.878905229 9.088698362 9.409872781 38678117 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.103251543 8.208282782 8.090560181 8.525821553 8.42416291 8.727349626 8.007790434 8.478936034 8.292101601 8.638988902 8.712528424 7.854688263 162707916 Catechol Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 8.41701443 7.935901539 8.212109165 8.013514284 8.095532057 7.76022188 7.983612136 8.310706976 7.99913077 8.312302633 8.20359323 8.227234847 166859879 4HBH Organic Remediation Aromatics BTEX and related aromatics Pseudomonas putida GB-1 8.408620572 8.708226231 8.54752638 8.669835393 8.485242308 8.570187168 8.83174185 8.713321914 8.682209806 8.79943621 8.629746204 8.703236139 110347076 fnr Stress Oxygen stress Mesorhizobium sp. BNC1 8.25052045 8.659649984 8.420470346 7.917178881 8.045801453 8.701967243 8.913188458 8.138681373 8.835619122 8.351953518 8.33277691 8.231890963 27530811 gyrB other category gyrB Rhodococcus sp. MBIC01430 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.379711156 8.173546541 8.46522581 8.195413033 8.158639271 7.738365106 7.925090874 8.356979554 8.365794348 7.868309805 8.417441876 229209425 B_lactamase_C Antibiotic resistance Beta-lactamases Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 8.991003413 8.763392789 8.668716189 8.939224418 8.858672373 8.64507324 8.812964846 8.844240735 8.488374767 8.528322875 8.551620128 8.47682715 172070750 gyrB other category gyrB Micrococcus luteus NCTC 2665 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus;species:Micrococcus luteus; 8.496260022 8.650827795 8.644650667 8.069430286 8.414183854 8.574718197 8.37635654 8.545541917 8.230207169 8.560464315 8.938981464 8.367361394 1049326 gyrB other category gyrB superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 8.514990204 8.671839373 8.595272762 8.658946981 8.593830129 9.018271462 8.5725653 8.788126013 8.835982549 8.931589812 33334342 nif_II Bioleaching Nitrogen Leptospirillum ferrooxidans 8.229551129 8.01186178 7.5307485 7.340165514 7.795022537 7.386998226 7.562217546 7.534972011 7.332297938 7.818655101 7.520666316 121713452 pectinase Carbon cycling Carbon degradation Pectin Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 8.752383687 8.130533052 8.198712166 9.0749114 8.933883068 8.630152027 8.938406537 8.860661725 8.409721372 8.570911185 8.341791599 8.614715352 227428786 AceB Carbon cycling Carbon degradation others Xylanimonas cellulosilytica DSM 15894 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Xylanimonas;species:Xylanimonas cellulosilytica; 8.520899476 8.518528249 8.628891628 9.141997971 8.943471824 9.062928784 8.535096842 8.415677185 8.609271664 218564124 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 8.948771031 8.815723584 8.859300346 8.508614961 8.362669756 8.307228442 8.014960916 8.21322447 8.370620518 8.261106003 8.495788811 145702072 ABC_transporter_I Bioleaching other category Metallosphaera sedula DSM 5348 8.51086695 8.396315398 8.832705921 8.313474184 7.400533592 7.865733811 7.36858206 7.257353263 8.168797533 7.864565707 7.89139165 8.046989625 77814270 ArsC Metal Resistance Arsenic Shewanella putrefaciens CN-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella putrefaciens; 9.62759011 9.811181673 9.790894247 10.30296934 10.30911058 10.12911846 10.1887142 10.29757846 10.22513293 10.2739326 10.24762402 9.747779704 148888431 phenol_oxidase Carbon cycling Carbon degradation Lignin Phanerochaete flavidoalba superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 8.610339693 8.31053682 8.073234771 7.7082327 7.946513955 7.944486412 8.457052299 7.582461266 8.246251646 8.048253996 7.779306024 8.08076523 91189506 ZntA Metal Resistance Zinc Vibrio alginolyticus 12G01 8.013316511 8.060291647 6.966812363 7.173054518 7.082074475 511858 pap virulence adhesin Klebsiella pneumoniae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella; 6.963769933 7.197390449 7.093546451 6.796363595 7.291483381 7.050897674 255106333 inv virulence invasion Thalassiobium sp. R2A62 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Thalassobium; 8.650799565 8.758792096 9.035855116 8.314913317 8.398428992 8.30324841 8.236056967 8.073447406 8.47890711 8.149134424 8.086620161 8.455807005 105892610 iro virulence Burkholderia cenocepacia AU 1054 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 10.75158107 10.62480837 10.41524818 10.83230421 10.58354539 10.6966512 10.63568044 10.46203367 10.59146266 10.3758244 10.57406001 10.1335508 71369287 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.261316783 8.309215025 8.195747194 8.033318847 8.082791037 7.932067084 8.004348705 7.974799694 8.212304554 7.832431152 8.095788806 7.689959784 126729207 atzB Organic Remediation Herbicides related compound Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 9.328185637 9.357402095 9.252870389 8.80613485 9.129950349 9.180082518 9.003724275 9.386228287 9.261764807 9.461126763 9.320953271 17428456 pcaG Organic Remediation Aromatics Other aromatics Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 7.974681533 8.168692873 8.228318567 8.170914853 8.038333983 8.149169552 8.207860511 8.566922199 8.172713458 109452554 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.347799162 8.206145587 8.424460726 7.713242855 7.753550497 7.600619973 7.223147211 7.10452593 8.009705431 7.525948318 7.556113457 7.600375425 88178150 nagG Organic Remediation Aromatics Aromatic carboxylic acid Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 9.687888734 8.983011634 9.60097239 9.174410442 8.904593111 8.755838252 9.29700876 9.063827454 9.01205751 9.084281834 9.062341793 9.058738745 218751134 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.508942289 8.413869491 7.791722953 8.207842895 7.911223649 8.104069503 8.256081623 8.506640583 8.380863703 8.364322801 255035905 rubisco Carbon cycling Carbon fixation Dyadobacter fermentans DSM 18053 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 10.68641061 10.50891198 10.0461597 9.253107325 9.28797733 9.573873566 239917738 hrcA Stress Heat shock Micrococcus luteus NCTC 2665 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus;species:Micrococcus luteus; 7.866516043 7.854724165 7.82969357 7.692151261 8.261968189 8.328027251 7.984655235 8.353127808 7.77443075 157913465 napA Nitrogen Dissimilatory N reduction Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 8.419920798 8.129438403 7.546262323 7.60357196 7.844333591 6.924530328 7.700139167 7.518209063 7.536909688 255925105 pstC Stress Phosphate limitation Actinosynnema mirum DSM 43827 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinosynnemataceae;genus:Actinosynnema;species:Actinosynnema mirum; 9.684999879 9.409425422 9.335244678 9.61770167 9.685923884 9.517690487 9.606423927 9.999673489 9.087086768 9.972309386 9.801939756 9.976117733 92394501 katE Stress Oxygen stress Psychrobacter cryohalolentis K5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter cryohalolentis; 8.958543281 9.299221187 9.110695174 8.545832362 8.167118952 9.049323744 9.529703111 8.950987177 9.031771993 8.63943392 8.852862364 8.727708754 253756985 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 8.211085825 8.173346456 8.316255431 7.816221688 7.583672053 7.618355928 7.43275928 7.444520446 7.887931293 7.523119149 7.278100448 7.656462424 225185314 amyX Carbon cycling Carbon degradation Starch Bacillus subtilis subsp. subtilis str. 168 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 7.919043039 7.806526787 8.008347346 7.890273293 8.235620635 8.147784181 8.184283088 8.104558174 8.112434788 196194273 sigma_32 Stress Sigma factors Alcanivorax sp. DG881 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 9.004135804 9.007764687 8.724653588 8.873775686 9.249023348 9.60942614 9.407326496 9.568222573 9.204523064 9.316890227 9.58164015 9.056254342 121663854 tftH Organic Remediation Aromatics Chlorinated aromatics Rhizobium sp. MTP-10005 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 8.597547682 8.688407058 8.374293521 8.900807904 8.737210943 8.589318191 8.432962783 8.813610393 8.645461172 8.833659306 8.607384868 8.2729099 133776087 cda Carbon cycling Carbon degradation Starch Collinsella aerofaciens ATCC 25986 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella aerofaciens; 8.726815616 8.192739868 8.501942756 8.897718123 8.811731486 8.617342512 8.459580986 9.039086542 8.265801128 8.623655144 8.606959801 8.747443468 160917538 narG Nitrogen Denitrification uncultured bacterium 8.466099263 8.388177251 8.381396182 7.535664494 7.521878832 7.707929792 8.355083123 7.390242146 7.593376268 7.754345812 7.736575984 7.64287825 78093544 narG Nitrogen Denitrification uncultured bacterium 8.879879737 8.632657471 8.958280103 8.390253448 8.469157418 8.339977221 8.447242166 8.483753706 8.452657716 8.488482948 8.526115852 8.12059906 4886552 PobA Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas sp. 10.7923734 10.83951054 10.53882325 10.59519218 10.74858748 10.79770759 10.6376841 10.79157648 10.61758997 10.59119659 10.75206081 10.56061198 159028642 mer Metal Resistance Mercury Microcystis aeruginosa PCC 7806 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 8.701673675 8.816810791 8.686493729 8.093928058 8.202206102 8.78971201 9.134555792 8.529681464 8.975835108 8.56036162 8.692419732 8.825981145 166712673 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Xanthomonas oryzae pv. oryzicola BLS256 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 8.311960102 8.325830017 8.31016556 8.730769701 8.748197948 8.355358448 8.517306119 8.810488733 8.699464739 8.670253458 8.565127198 8.525069669 124109821 mcrA Carbon cycling Methane Methane production uncultured euryarchaeote superkingdom:Archaea;phylum:Euryarchaeota; 8.823393071 8.886743709 8.988391317 8.538400561 8.703466813 9.306424496 8.18604365 9.167737456 8.391934341 8.379245488 8.353283291 182439353 TerD Metal Resistance Tellurium Streptomyces griseus subsp. griseus NBRC 13350 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 9.166452383 8.812585686 8.563003696 9.01643905 8.883299907 8.484760542 9.012441212 8.814204054 8.673563874 8.891934409 8.755850974 8.869411779 93357964 nbaC Organic Remediation Aromatics Nitoaromatics Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.818153468 9.310724396 9.111688075 9.433539604 9.414382135 9.230384457 9.502396051 9.582151074 9.067404571 9.709921158 9.441790113 9.019462373 29605348 pcaG Organic Remediation Aromatics Other aromatics Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 9.818249314 9.917175431 9.582153249 9.546367493 9.040919786 9.993484307 10.21820071 9.842794525 10.06692825 9.932552358 10.07636485 10.27000171 91779487 fnr Stress Oxygen stress Burkholderia xenovorans LB400 8.99400746 9.085759237 8.925995961 9.702038758 9.34830645 8.883030342 9.430784955 9.40169909 8.965933326 9.200459501 8.900305986 8.985510382 219546032 dsrA Sulphur sulfite reductase Candidatus Methanosphaerula palustris E1-9c superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;genus:Methanosphaerula;species:Methanosphaerula palustris; 8.456489096 8.157691794 8.132516286 7.950222588 7.818844932 7.997414325 7.835670094 7.98535986 7.723476077 7.70983361 7.922445147 209495089 sigma_70 Stress Sigma factors Arthrospira maxima CS-328 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira maxima; 8.468854188 8.57756053 8.815665153 8.017453664 7.982693784 7.703513197 7.516087044 7.770794209 7.667265193 7.527897011 7.862883808 39648843 AmiE Organic Remediation Aromatics Other aromatics Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.862484478 8.586747716 9.032002372 8.307595312 8.363334769 8.200826222 8.164834347 8.305503119 8.292171708 8.061728874 7.918356702 8.186726682 117926675 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Magnetococcus sp. MC-1 superkingdom:Bacteria;phylum:Proteobacteria;genus:Magnetococcus; 9.335764148 9.453912382 9.347927106 8.629085143 8.522584256 8.477064304 9.300827277 8.873558513 9.344755654 8.61055784 8.429609311 8.375811535 187721576 atzA Organic Remediation Herbicides related compound Clostridium botulinum B str. Eklund 17B superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium botulinum; 8.367809327 8.311101578 8.458521183 7.395782565 7.494584344 7.725324254 7.471833267 7.303489727 7.841989677 158107623 pstA Stress Phosphate limitation Frankia sp. EAN1pec 8.703549635 8.892451761 8.7710824 8.799498745 8.866184936 8.81384039 9.173409636 9.030277029 8.922092116 9.373674487 9.523661925 8.945219962 118471231 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.217371233 8.504051564 8.231912375 7.72907176 7.73789679 8.193821003 8.701747791 8.264888136 8.615342251 8.391126464 8.53297902 8.684822123 171057176 pilin virulence pilin Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 8.191475205 8.221583031 8.230407972 7.258403648 8.040693022 7.999104184 8.15770804 7.34959461 8.297447341 7.680654774 7.969918099 7.557626479 84353693 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Burkholderia cenocepacia PC184 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 8.298757067 7.924527203 8.173648869 8.108837731 7.856705729 7.739431839 7.953329086 8.066881579 7.82540266 7.914131693 7.455598843 219683430 gyrB other category gyrB Bifidobacterium animalis subsp. lactis AD011 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 8.183912122 8.155254363 8.586945827 8.063048441 7.914528283 7.66199753 7.616314777 8.112421775 8.117967673 7.889980601 7.890917213 8.004849273 149812055 dehH Organic Remediation Chlorinated solvents Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 9.766911027 9.787772094 9.983792387 9.42509323 9.432217575 9.300290302 9.312831285 9.540978439 9.382817228 9.622436813 9.561258883 9.511566267 159040838 atzA Organic Remediation Herbicides related compound Caldivirga maquilingensis IC-167 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Caldivirga;species:Caldivirga maquilingensis; 8.813097768 8.919948771 8.904179932 8.439708592 8.166067539 8.270266741 8.040760335 8.092624378 8.147019279 8.108113264 8.046747103 8.436013472 66801983 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 8.40389425 8.315318877 8.634996314 8.349933604 8.120358562 7.92897386 7.994180444 8.095720744 8.152959263 7.795624881 8.090244323 145572506 sigma_32 Stress Sigma factors Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 7.386445303 6.95638602 7.558470589 6.72014255 7.617042101 7.124768772 7.08195108 90020151 glnA Stress Nitrogen limitation Saccharophagus degradans 2-40 7.966992094 8.220002065 7.314571248 7.301952261 7.255535559 7.100285752 7.086958474 7.258289773 86358387 nhh Organic Remediation Aromatics Nitoaromatics Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 9.013686927 9.056935839 9.282217102 8.584594249 8.394008349 8.328907648 8.614637116 8.379047466 8.912550532 8.423495573 8.439280777 8.459286134 77545175 fnr Stress Oxygen stress Pelobacter carbinolicus DSM 2380 9.095934021 8.860315789 9.024152734 8.308305403 8.255525889 8.290653192 8.260489492 8.090549863 7.970463402 7.857013921 8.431561433 161018680 akbF Organic Remediation Aromatics BTEX and related aromatics Bartonella tribocorum CIP 105476 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella tribocorum; 7.060457116 7.124965783 118468184 adpB Organic Remediation Pesticides related compound Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.449644903 8.424255052 8.576738371 7.86195805 7.7335261 7.626882352 7.706892113 7.584743345 8.354442017 7.515984993 7.481936505 7.767362755 63029785 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.873862516 8.819655916 8.462533563 8.67167866 8.84947769 9.248655019 8.82723319 8.702994532 9.160954871 9.053092787 9.114615805 255502811 nirS Nitrogen Denitrification uncultured bacterium 8.283533915 8.385724044 8.19532869 8.062514344 7.867903118 8.110247569 8.167864663 8.40234843 8.282319556 8.019013639 152984294 cellobiase Carbon cycling Carbon degradation Cellulose Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.399693973 8.643756395 8.369169989 8.367089172 8.288900463 8.664067725 9.054620378 8.786817143 8.722815178 8.638172132 8.702807455 9.004936516 195941139 AceA Carbon cycling Carbon degradation others Escherichia coli O157:H7 str. EC4024 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 8.8218165 9.014197552 9.005293264 8.528660528 8.136009112 8.471930855 8.681772912 8.632503365 8.628707157 8.508228721 8.542464524 8.669013476 104782092 ChrA Metal Resistance Chromium Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 8.588251487 8.408441215 8.438749216 8.587763191 8.507085201 8.39404185 8.251858191 8.765885216 8.17342792 8.601492034 8.5897493 8.28761349 84689507 atzB Organic Remediation Herbicides related compound Parvularcula bermudensis HTCC2503 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 9.421995637 9.544601111 9.519380992 8.902861454 8.535069941 8.725203467 8.688727218 8.546432433 8.567150971 8.726674253 8.549974029 8.793209532 150273191 fnr Stress Oxygen stress Bacteroides capillosus ATCC 29799 9.619557228 9.666899977 9.932023005 9.23899561 9.211126205 9.032474355 9.326543005 9.300668594 9.097855837 9.383988022 9.412839959 9.369795211 56678058 linC Organic Remediation Pesticides related compound Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 8.800461446 8.944989046 8.975996698 8.53681384 8.477696222 8.503029479 8.103872912 8.238196212 8.410465742 8.286421641 8.189090426 8.505877248 283813644 sigma_24 Stress Sigma factors Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 8.202015955 8.592322589 8.012431093 8.024055501 8.37373634 8.796777408 8.404870749 8.835410193 8.270038544 8.147693097 7.954428637 222436418 sigma_24 Stress Sigma factors Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 8.295766386 8.614310272 8.463930223 8.006932428 7.941508478 8.263681125 8.311794144 8.032780894 8.386921364 8.341293706 8.089252265 8.416367415 256759738 sigma_24 Stress Sigma factors Thiomonas intermedia K12 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas;species:Thiomonas intermedia; 10.15444371 10.32303113 10.5022143 10.38152879 10.68713325 10.58816206 10.62309665 10.81409496 10.43076591 10.55634841 10.51464247 10.86801701 220711137 ppx Phosphorus Phosphorus utilization Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.942232001 8.856829161 8.426468036 8.342171507 8.460559102 8.469102554 8.799825533 8.638053012 8.481972438 110285730 atzA Organic Remediation Herbicides related compound Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 9.180782175 8.957321412 8.573944129 8.784505333 8.712398559 8.695934744 8.983495064 8.879542504 9.191257561 8.528723409 8.414965106 8.559716184 110166093 CopA Metal Resistance Copper Trichodesmium erythraeum IMS101 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Trichodesmium;species:Trichodesmium erythraeum; 8.304018205 8.36840447 7.905369449 8.103613438 8.916113657 8.351734591 8.125058615 8.357797249 8.08921381 89349230 merB Metal Resistance Mercury Xanthobacter autotrophicus Py2 8.456170244 8.106678458 8.312163069 8.553454874 8.116475279 7.843974246 8.668359051 8.306896903 8.329642726 8.348215147 8.265480641 29605050 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 8.728932592 8.838344197 8.96780339 8.243863979 8.168878244 8.125508932 8.319566678 8.384488733 8.496831582 8.37454719 8.258936061 8.163298148 222055570 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.253443784 8.296953306 8.508671267 8.410698242 7.900830988 7.768641849 7.38796523 7.703369249 8.312125201 7.775754917 7.681666421 7.974620741 189341258 pstB Stress Phosphate limitation Chlorobium limicola DSM 245 8.948899228 8.747800596 9.001427468 8.560921806 8.476982053 8.210391264 8.793963007 8.958360332 8.954380246 8.854743465 8.880006691 184155265 cadBD Metal Resistance Cadmium Lactobacillus fermentum IFO 3956 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus fermentum; 9.447035841 9.509335347 9.705852964 8.906699175 8.817721303 8.984572347 8.633930937 8.515813944 8.855985386 8.83420961 8.862867443 9.15864395 171851176 AceB Carbon cycling Carbon degradation others Corynebacterium urealyticum DSM 7109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium urealyticum; 8.577681176 8.549139679 8.262229555 8.043565966 8.438460809 8.430888206 8.443448283 8.208966842 8.490895183 148500738 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 8.90470562 8.819291341 9.013691025 8.667208319 8.420769201 8.15635386 8.303952513 8.322841743 8.66892303 8.269649977 8.139140706 8.445195029 227507783 pstS Stress Phosphate limitation Gardnerella vaginalis ATCC 14019 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Gardnerella;species:Gardnerella vaginalis; 9.115044311 8.366822956 8.935249268 7.852242364 7.819702836 7.689713603 8.150668713 7.931190234 8.039721671 8.04333651 7.992247865 8.160086382 111221365 obgE Stress Radiation stress Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 8.97795528 9.026717203 9.049473483 8.389337113 8.489276492 8.403014067 8.184894214 8.215011675 8.590251386 8.164350146 8.218197838 8.424272523 168703517 hly virulence hemolysin Gemmata obscuriglobus UQM 2246 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata;species:Gemmata obscuriglobus; 8.71704923 8.349667063 8.689646592 8.509630159 8.392749765 9.567705739 7.234320169 8.6280499 8.866119127 8.512961242 157804784 APS_AprA Sulphur adenylylsulfate reductase endosymbiont of Inanidrilus makropetalos superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.888397119 8.8585932 8.688136005 8.382123021 8.142131341 8.030032187 8.629574144 8.66685971 8.813730735 8.669273707 8.621835201 85709358 ppx Phosphorus Phosphorus utilization Erythrobacter sp. NAP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 8.137568567 8.333068992 8.434699105 8.169129403 8.18417675 7.987816593 8.032319342 8.500954677 8.50645729 8.193425857 8.043218011 8.203638169 69257853 CopA Metal Resistance Copper Magnetococcus sp. MC-1 superkingdom:Bacteria;phylum:Proteobacteria;genus:Magnetococcus; 9.423805405 9.391018437 9.664999999 8.743042946 8.923564992 8.53924114 8.302314102 8.150672211 8.556025927 8.471752786 8.948955662 115387787 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 8.107363829 7.912267585 8.097767662 7.956283262 7.319078386 7.923895047 7.883294772 7.772281433 110826478 APS_AprA Sulphur adenylylsulfate reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.295879729 8.300039136 8.421342332 7.795337009 7.545567594 7.470559411 7.45625364 7.083639862 7.688686238 7.229551459 7.353595917 7.699045231 85713968 gyrB other category gyrB Nitrobacter sp. Nb-311A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter; 9.91135825 9.840874734 9.722782245 9.230082995 9.501161893 9.665147439 9.771284605 9.595465098 9.499910646 9.686653164 10.00828626 9.679329381 77977649 ppx Phosphorus Phosphorus utilization Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 7.766595368 7.96854198 8.07268379 8.031518268 8.036485514 8.175982225 8.409276529 8.206993243 7.982752179 241763956 phoB Stress Phosphate limitation Acidovorax delafieldii 2AN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax delafieldii; 8.387354977 8.468824922 8.354478636 8.163165955 8.808219111 8.66279403 8.285576758 8.242026217 8.036640524 8.016735662 258638683 Mex Antibiotic resistance transporter Pantoea sp. At-9b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 8.976397673 8.822293787 8.81369542 8.54584033 8.515246503 8.276144674 8.495924385 8.549985819 8.469380349 8.439417857 8.439633137 8.413364329 227108075 sigma_24 Stress Sigma factors Chryseobacterium gleum ATCC 35910 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Chryseobacterium;species:Chryseobacterium gleum; 8.513644088 8.450424499 8.678164297 7.826583506 8.042160126 7.898337645 7.283746714 7.564324338 7.698389844 7.506948502 7.690024382 187930607 CopA Metal Resistance Copper Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.478248333 8.382866769 8.693876729 7.945715856 7.482600034 8.081099848 8.18777577 8.004341173 8.236637427 7.790451015 7.959458779 8.105909927 42558703 trzN Organic Remediation Herbicides related compound Arthrobacter aurescens superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 9.835905506 9.216580357 9.320040282 9.874968969 9.863070301 9.647070136 9.824054521 9.731225937 9.510555472 9.783389659 9.814149238 9.622854071 108765644 HBH Organic Remediation Aromatics BTEX and related aromatics Rubrobacter xylanophilus DSM 9941 8.936532824 9.290388382 9.22187009 8.622118431 8.666173983 8.605116683 8.824523422 8.98761342 8.892573115 8.955595227 8.842441162 8.85076514 229314883 pstB Stress Phosphate limitation Lactobacillus rhamnosus LMS2-1 9.170581105 8.965765674 9.171990698 8.511362707 8.303915396 8.310350092 8.018054019 8.066393513 8.31279902 8.262990383 8.14268955 8.521572296 229207758 grpE Stress Heat shock Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 8.612631733 8.504099483 8.321506139 7.726176032 7.71723891 8.046602628 8.492845933 8.007392435 8.460185123 8.000403896 8.048647433 7.871932976 148557154 nagI Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.365128758 8.360500998 8.332481408 8.865144416 8.847313064 8.652395765 8.551963126 8.993233824 8.508189847 8.898361475 9.00726711 8.615768647 114569204 ArsC Metal Resistance Arsenic Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 10.34377194 10.34662666 10.09466362 10.48010582 10.58602534 10.55777749 10.49107127 10.82192223 10.6475367 10.94327936 10.9919395 11.06184121 166085368 ArsC Metal Resistance Arsenic Microcystis aeruginosa NIES-843 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 8.553076455 8.428605417 9.032652919 7.964829074 7.809879128 7.83233387 7.801253453 7.53540243 8.015911099 7.709161006 7.72368175 7.883821355 144905828 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.701562073 8.3667405 8.402887492 7.6229664 7.748590136 8.123172201 7.833285446 7.900247294 8.003083007 7.976353402 8.044364815 7.986522935 261204715 glx Carbon cycling Carbon degradation Lignin Ajellomyces dermatitidis SLH14081 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 9.216955589 9.192915608 9.290676129 8.504980603 8.511362271 8.222851588 8.178173626 8.085109934 8.278154687 8.28691342 8.345809055 84391141 oxyR Stress Oxygen stress Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 8.4177429 7.954848553 8.193606074 8.014384284 7.514949201 7.91934185 7.863142737 7.812284491 7.876848118 7.75584698 7.441229349 7.769601746 177843627 nrfA Nitrogen Dissimilatory N reduction Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 8.82547197 8.810131261 8.691689717 8.883548793 8.879341642 8.787680507 8.696341888 8.786905968 8.838978372 8.861840917 85699558 pstC Stress Phosphate limitation Nitrobacter sp. Nb-311A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter; 8.151618836 8.193010846 8.440309463 8.375668424 8.186730671 7.905790111 7.875261978 8.263133868 8.102215851 7.864048436 8.075755516 8.176473354 227876310 clpC Stress Protein stress Mobiluncus mulieris ATCC 35243 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus mulieris; 9.020483078 9.35336071 9.472333109 8.944423143 8.797052236 8.546536726 8.572314382 8.897601406 8.823264387 8.816470896 8.858523789 8.990831235 239911267 pstB Stress Phosphate limitation Thermococcus gammatolerans EJ3 8.23686686 8.120362992 8.507672354 7.826078473 7.761891373 7.831701939 7.493628094 7.710140651 8.361627549 7.888308321 7.599061725 8.135297611 69153333 CopA Metal Resistance Copper Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.341597675 8.500176069 8.857388373 8.528448645 8.37736673 7.93745502 8.303066152 8.454442622 8.2678809 8.363935134 8.237359385 8.247855588 196185934 amyA Carbon cycling Carbon degradation Starch Brevundimonas sp. BAL3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas; 9.16338291 8.89153442 8.799197336 8.816764689 8.785030586 8.90285705 8.886332007 8.836630501 9.039084994 8.683578518 8.857075397 8.651147557 73539681 nagG Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 9.319027698 8.314327253 8.519329345 8.38843577 8.541966083 8.228046064 8.756812512 8.329695202 8.535837756 8.621188333 8.382879775 283839392 sigma_24 Stress Sigma factors Rhodopseudomonas palustris DX-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 10.4099073 10.2893056 10.04669599 10.25588915 10.07010801 9.87720907 10.40429534 10.23544292 10.22710472 10.11108951 9.870115766 10.05757816 157370564 cellobiase Carbon cycling Carbon degradation Cellulose Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 9.068496657 9.113509647 8.588508525 8.368619327 8.480004447 8.59692021 8.002261308 8.576103023 8.218172287 8.194680585 8.649756261 92112089 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Acidovorax sp. MUL2G8 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 8.239043347 8.430486171 8.457050477 7.902303531 8.003429952 8.108968463 7.984680153 8.143487938 8.474304158 8.058650424 8.259013846 8.308506567 269790558 sigma_24 Stress Sigma factors Thermobaculum terrenum ATCC BAA-798 superkingdom:Bacteria;genus:Thermobaculum;species:Thermobaculum terrenum; 8.84774701 8.7039314 8.811856981 8.414116774 8.585206769 8.528918363 8.231368712 8.703305749 8.62655519 8.754896841 8.858346612 8.61071078 52306656 proV Stress Osmotic stress Mannheimia succiniciproducens MBEL55E superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Basfia;species:Mannheimia succiniciproducens; 8.8484162 8.970478773 8.087771739 8.491797745 8.725597928 8.649276474 8.552875988 8.920422637 8.747682789 8.738579243 8.600616658 149814105 vanA Carbon cycling Carbon degradation Others Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 8.313606776 8.512559062 8.308713509 7.725484325 7.8664013 8.103561839 8.12830557 7.570373449 8.406236155 7.779509046 7.910297123 7.991571223 81300844 vanA Carbon cycling Carbon degradation Others Synechococcus elongatus PCC 7942 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus;species:Synechococcus elongatus; 8.765685471 8.576516826 8.559875423 8.416512912 8.192958844 8.195404599 8.311231535 8.371371415 8.237557367 7.973647061 8.507794218 212548621 gyrB other category gyrB Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;genus:Candidatus Azobacteroides;species:Candidatus Azobacteroides pseudotrichonymphae; 7.328338494 7.174193893 7.293566995 6.940367055 7.288401927 160362880 nagG Organic Remediation Aromatics Aromatic carboxylic acid Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.472856881 8.490237193 8.35210194 8.287323 8.169391963 7.883315108 8.378354343 7.969699361 8.376598009 8.418134767 8.396982753 254391513 glnA Stress Nitrogen limitation Streptomyces clavuligerus ATCC 27064 8.536006135 8.564364201 8.478733119 7.801347142 8.580502856 8.561528998 8.520693175 8.565977083 8.518756979 8.464946023 8.145737312 237797608 cytochrome Energy process Energy process Pseudomonas syringae pv. oryzae str. 1_6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 8.664405262 8.129299002 8.529983547 8.318533512 8.221815955 8.015020606 8.390164414 8.086278537 8.226503582 8.298854862 8.047936419 224601885 iro virulence Lutiella nitroferrum 2002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Lutiella;species:Lutiella nitroferrum; 9.930434116 9.920744712 9.974150066 10.1189437 10.14535838 9.722346531 10.10881052 10.15033952 10.01841429 9.994677842 9.714351382 9.600009718 159880890 pstB Stress Phosphate limitation Hydrogenivirga sp. 128-5-R1-1 8.192830272 7.975652067 7.209211674 7.255185425 6.801097672 7.341665609 163854112 pstB Stress Phosphate limitation Methylobacterium extorquens PA1 8.363518853 8.401441324 8.348809585 7.934964858 7.769521191 8.000613559 7.342176235 7.135325906 8.053719493 7.543817555 7.648145398 7.677747662 119536392 atzC Organic Remediation Herbicides related compound Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 9.159593996 8.883793149 8.984583599 8.369769425 8.599865342 8.514798008 8.697105595 8.300916262 8.603044961 8.508005093 8.899120455 8.43769692 241867976 obgE Stress Radiation stress Sphingobacterium spiritivorum ATCC 33861 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium;species:Sphingobacterium spiritivorum; 8.119867536 8.13119352 8.302115716 16263349 nreB Metal Resistance Nickel Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 8.413801897 8.314375904 8.49381253 8.482209765 7.936207836 8.658909502 8.612069395 8.590478212 8.647208229 7.880442831 87331874 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 8.898957662 8.685815116 8.740033972 8.259716077 8.113650006 8.09401236 8.373715817 8.242047878 8.386722643 8.295170383 8.59704883 8.529553122 83724101 Catechol Organic Remediation Aromatics Other aromatics Ralstonia solanacearum UW551 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 9.747617216 9.672437978 9.420350848 9.622820375 9.183748486 8.872703579 9.744710759 9.655984841 9.102678956 9.182756417 8.962998918 9.3198423 218751154 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 9.063660366 9.121960753 8.843050019 8.653796756 8.213711808 8.61884442 8.98980983 8.674448462 8.817454468 8.662407914 8.747009272 8.618642465 88941527 mer Metal Resistance Mercury Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 8.993159194 8.556164447 8.877163116 8.909045608 8.702266608 8.675054932 8.722460344 8.572781221 8.582145907 8.784079691 8.807534559 8.490956313 260462529 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 9.505882692 9.715098452 9.484801975 8.683197814 8.830963643 9.147752552 9.521158652 9.007459034 9.685472741 9.004973051 8.866470706 9.133977479 283829365 sigma_70 Stress Sigma factors Candidatus Poribacteria sp. WGA-A3 superkingdom:Bacteria;phylum:Candidatus Poribacteria; 8.348584521 7.801333193 8.338185711 7.669828739 7.842021077 7.676363396 7.356913874 7.662962534 7.91273797 7.895872669 7.873562998 7.895142403 254353366 Mex Antibiotic resistance transporter Legionella drancourtii LLAP12 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella;species:Legionella drancourtii; 8.757047123 8.496126791 8.655880102 8.333986565 8.565101844 8.490239598 8.448393058 8.790324171 8.605615086 8.945030349 8.931293924 8.978525795 171851048 cydB Stress Oxygen limitation Corynebacterium urealyticum DSM 7109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium urealyticum; 8.895631949 8.731677932 8.904364782 8.508675003 8.443376464 8.437523592 8.029387775 8.15717865 8.273883387 8.336189376 8.24303083 8.577531284 23450983 bclA Organic Remediation Aromatics Aromatic carboxylic acid Thauera aromatica superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 8.751484614 8.385733458 8.631096308 8.16070733 9.110458532 9.227521259 8.797419824 9.200411682 8.131730537 7.926114766 8.167759096 27348390 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 9.733927525 9.675453348 9.607007588 9.140215812 8.955312799 8.858647354 9.437620971 8.920231465 9.495292 9.185744048 9.349113951 8.941508149 220717453 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 9.235901272 9.233164778 8.970669521 9.070753694 8.928134563 9.156037759 8.622683836 9.212647374 8.819357721 9.056910191 9.383737892 9.052288769 161523029 B_lactamase_C Antibiotic resistance Beta-lactamases Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 8.121982563 8.233740321 8.712547191 8.067256708 8.45068214 8.708938779 8.260699593 8.398264566 8.493933794 8.035143173 8.414750643 8.203941812 214042832 glnA Stress Nitrogen limitation Roseobacter sp. GAI101 8.548686955 8.771363333 8.735249646 8.113915039 7.985008534 7.910118699 8.028251632 8.097622565 8.113938327 7.989125947 7.63654193 8.130796017 138894340 fnr Stress Oxygen stress Geobacillus thermodenitrificans NG80-2 8.24903493 8.179644507 8.496213825 7.351247961 7.322254234 7.455759307 6.903968712 7.618456972 7.335814131 7.389215788 7.334874719 111150107 pcc Carbon cycling Carbon fixation Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 8.382678163 8.522985234 8.620066129 8.66322326 8.282312478 8.13232453 8.215657809 8.275890008 8.541372901 8.436255167 8.38886766 8.090186401 194561309 silC Metal Resistance Silver Burkholderia cenocepacia PC184 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 8.027949721 8.088090037 7.91723037 8.03112806 8.045302453 7.862901863 8.32813088 8.205806413 8.075373053 8.287439971 8.214819087 76802709 alkK Organic Remediation Others Natronomonas pharaonis DSM 2160 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natronomonas;species:Natronomonas pharaonis; 8.219383194 8.093203361 8.444230489 7.685529206 7.842813823 7.73355515 7.896847579 7.55382549 7.486612397 7.464605649 7.651825544 113730446 silC Metal Resistance Silver Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.216070401 8.247870519 8.096278318 7.908777449 7.911672997 7.733335608 8.163590162 8.109013258 8.253971263 8.170058993 229242653 fnr Stress Oxygen stress Cellulomonas flavigena DSM 20109 8.811845997 8.992847947 9.053245139 8.631662299 8.653688817 8.395395929 8.504077184 8.630378804 8.850663607 8.691131179 8.815855841 8.855367146 170751475 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 9.748813751 9.395309543 9.061588766 9.785599971 9.289941594 9.018310708 9.544618552 9.543441872 9.552340954 9.208842355 9.292920807 9.16684516 187478892 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 8.923312191 8.917927795 8.894333418 7.908829905 7.993148472 8.132620724 7.871506713 8.413375849 7.94965066 7.756481434 8.100151367 211959451 pcaG Organic Remediation Aromatics Other aromatics Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 8.501535119 8.302730425 8.240684987 7.554147198 7.703837013 7.817009008 8.311849589 7.744497925 8.038444915 7.940778328 8.250784177 7.892788775 54013939 akbF Organic Remediation Aromatics BTEX and related aromatics Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 9.728856239 9.819573378 9.892033233 9.363910019 9.417665294 9.6036554 9.622810463 9.95505323 9.361220173 9.931923164 10.04646474 9.58283654 148571636 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 8.672549662 8.131994094 7.893673608 7.783787696 7.87562705 7.439345752 7.450666517 8.015228735 7.376504733 7.286729311 7.684547608 118462569 CDH Carbon cycling Carbon degradation Cellulose Mycobacterium avium 104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 10.31452983 10.30640933 10.25193087 9.64774812 9.452736513 9.274389905 9.98981026 9.520748395 10.22053076 9.548764236 9.930293562 9.610933434 251854396 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium matruchotii; 8.332246535 8.234565287 8.117038712 7.912391004 8.126265513 7.965943802 7.555138573 8.166311984 7.971567098 8.225326977 8.385085767 8.258849385 227496146 opuE Stress Osmotic stress Actinomyces urogenitalis DSM 15434 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces urogenitalis; 9.35434668 9.559596004 9.710363682 9.083420107 9.027076174 8.987356564 9.099906362 8.933260139 8.883165471 8.975856796 9.11970117 9.266038281 68343096 iro virulence Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.571992811 8.722860981 8.599590754 8.262426578 8.495617595 8.456217374 8.552439246 8.325550393 8.658229302 8.52255404 8.629780006 8.737782368 110647355 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 8.175413872 8.288861466 8.328165537 7.621291356 7.833557999 7.920700509 8.179493501 7.73443942 8.185635878 7.686019894 7.894764476 8.029451546 116610444 mer Metal Resistance Mercury Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8.297774291 8.730794265 8.559372308 8.518955893 8.630778046 8.489587126 8.423589814 8.723310713 8.651431355 8.747856865 8.737728213 8.784367601 48093941 Catechol Organic Remediation Aromatics Other aromatics Nocardia sp. H17-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia; 9.039826508 9.066593334 8.975459518 8.388967879 8.555543733 8.498538938 8.672021452 8.590345642 8.089023792 8.534702767 8.797550901 8.587117702 159180868 ChrA Metal Resistance Chromium alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 9.552349516 9.44461721 9.656542886 9.0492347 8.99979997 8.8077076 8.889254542 9.10791139 8.921104822 9.034554631 9.181092836 9.316448959 126636769 pimF Organic Remediation Aromatics Aromatic carboxylic acid Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 8.324100836 8.507052429 8.248572233 7.681420807 7.549880835 7.927432871 7.419303076 7.384846672 7.384458229 7.611916673 7.655292701 116098698 ppx Phosphorus Phosphorus utilization Lactobacillus brevis ATCC 367 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus brevis; 8.95935038 9.069576732 9.211508883 8.095690635 9.006762949 9.374058912 8.83717082 9.216418852 8.655752098 8.786851597 8.790438078 161381979 glnA Stress Nitrogen limitation Oceanibulbus indolifex HEL-45 10.11263931 9.823868281 10.06003196 8.958877432 9.408662383 9.200346795 9.65743621 9.373920924 9.275346322 9.286746355 9.537560434 9.445867781 150014776 rubisco Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.789986173 9.073264416 8.833205228 8.673744834 8.85773145 8.895666539 8.650922674 9.049822745 8.739712347 8.990078453 9.259102476 8.847051844 190010931 ppk Phosphorus Phosphorus utilization Stenotrophomonas maltophilia K279a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 8.376835229 8.519957732 8.396760764 8.323526707 8.124840693 8.439652337 8.23613799 8.32589675 8.315612301 8.167179614 8.130772508 119716218 pcc Carbon cycling Carbon fixation Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 9.19369803 9.184935906 9.285776849 8.572304051 8.830206357 8.85090747 9.221008433 8.607698268 9.115927256 8.596864315 8.833980877 8.740316845 242239314 vip virulence virulence protein Dickeya dadantii Ech703 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 9.537161877 9.509232628 9.353572486 9.511464863 9.818448374 9.573845611 9.408783429 10.08757534 9.294686381 9.907002854 9.688145123 9.775426433 66046226 amyA Carbon cycling Carbon degradation Starch Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 7.388530575 7.096752761 7.077031849 7.157724689 7.489782051 56798493 catechol_B Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 10.17313814 10.21453667 10.03432037 9.97032129 10.05859301 9.802737582 10.00455113 10.18357522 10.15131841 10.20122725 10.20132629 10.11754765 23326703 gyrB other category gyrB Bifidobacterium longum NCC2705 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 9.956736904 9.885791868 10.04457416 9.621806194 9.667179914 9.302292994 9.535156182 9.579969739 9.986590324 9.652516626 9.764800299 9.9549564 2062565 B_lactamase_A Antibiotic resistance Beta-lactamases Burkholderia cepacia superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.420503666 8.518055794 8.446809447 8.467983635 8.740887264 8.27138449 8.165368566 8.526600294 8.386815894 8.346586954 8.247627695 8.359693981 48477912 dnaK Stress Heat shock Picrophilus torridus DSM 9790 7.931010781 8.206763266 7.212324136 7.555825678 7.704141939 7.529254591 7.681259781 197117513 cytochrome Energy process Energy process Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 8.37310336 8.424899932 8.606374539 7.965181347 7.936731049 8.400759666 8.022732081 8.167470996 7.837945335 8.016152405 8.234537981 84499972 pimF Organic Remediation Aromatics Aromatic carboxylic acid Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 9.706314167 9.663461474 9.757882145 9.120695587 8.986915658 8.839051634 8.998804554 9.252853207 8.921707409 9.253462086 9.219237806 9.397727751 218288768 fnr Stress Oxygen stress Alicyclobacillus acidocaldarius LAA1 8.135130424 8.051308605 8.315599654 7.599969195 7.857395267 7.795351398 7.295115679 7.843189132 8.246675426 7.739209076 7.709943363 7.503234832 77973060 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 8.858153923 8.931391453 9.09669457 8.626483897 8.378094878 8.430594146 8.173164521 7.77667221 8.576010833 8.666745618 8.704139581 105897463 glnA Stress Nitrogen limitation Burkholderia cenocepacia AU 1054 9.853686985 9.871495512 9.794518372 9.215800344 9.462271093 9.952612087 9.507591639 9.831972849 9.446747839 9.516991294 9.484116471 83814063 Arylest Organic Remediation Aromatics Other aromatics Salinibacter ruber DSM 13855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 8.314659743 8.388740548 8.416849287 8.054564184 8.61297007 7.989774685 8.266119504 8.152700569 8.415095993 269836399 pstC Stress Phosphate limitation Sphaerobacter thermophilus DSM 20745 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 8.398218841 8.718329237 8.501398142 8.699197895 8.605088157 8.687971751 8.485837056 9.055853907 8.65019934 8.818789453 8.917069365 8.363347812 226362830 bphF1 Organic Remediation Aromatics Polycyclic aromatics Rhodococcus opacus B4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 8.795530459 8.963178021 8.758427259 8.311953024 8.359845873 8.781638668 8.8191829 8.398500797 8.851102088 8.526570462 8.218707848 8.543760279 14026863 proV Stress Osmotic stress Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 8.668241394 8.525889737 8.668666561 8.301396213 8.260181114 8.093168883 8.027892265 8.21458811 8.304145822 7.993886467 7.867142461 8.217186272 83842274 ureC Nitrogen Ammonification Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 9.399166458 9.359607303 9.709006844 8.670495539 8.559339627 8.694572862 8.351847284 8.403398241 8.488262566 8.538929637 8.791322714 8.982996419 221156346 sigma_70 Stress Sigma factors Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 8.133300747 8.494102925 8.04363515 8.241117189 7.554187746 7.737998553 8.189845052 7.642466687 8.424782198 7.386874052 7.734954719 7.316071781 167644962 B_lactamase_A Antibiotic resistance Beta-lactamases Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 9.659421597 9.964615022 9.662370897 9.219361564 8.989566787 9.513642969 10.09288701 9.59899777 9.734000866 9.435908223 9.45431273 9.366599519 111148650 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 9.243426775 9.403873114 9.505958345 8.849623102 8.752178124 8.507661259 8.186858898 8.728107624 8.671168889 8.918683228 9.146107439 9.076778892 53755637 ahpC Stress Oxygen stress Legionella pneumophila str. Lens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella;species:Legionella pneumophila; 8.822991884 8.347319564 8.608572354 8.765120839 8.533910156 8.705852674 8.440001163 8.181588852 8.48230872 8.630137845 8.476551239 116061987 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.091960644 8.213283676 7.627833025 7.777081566 7.720383133 7.634714983 7.861333012 94471171 narG Nitrogen Denitrification uncultured bacterium 8.618097453 8.52780355 8.530447149 8.286305486 8.246362846 8.127813618 8.180971205 8.206315097 8.193974476 8.112706343 8.138160528 8.180522516 62423205 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Brevibacterium linens BL2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium linens; 8.481780177 8.123746702 8.190397127 8.26357927 7.75017898 8.256594274 8.636918955 8.317289987 8.210827766 7.813124727 8.040465322 7.864175101 241366206 sigma_32 Stress Sigma factors Acidovorax delafieldii 2AN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax delafieldii; 9.231180031 9.626700598 9.291315374 8.740728968 9.442545272 9.779148337 9.60680393 9.679500104 9.148150379 8.961477417 9.126666187 146405256 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Bradyrhizobium sp. BTAi1 8.265783633 8.165943434 8.293173085 7.557592112 7.479017563 7.681012694 7.786306447 7.821182232 8.060798656 7.401749528 7.429927263 7.472520785 99083075 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 9.471925816 9.482209402 9.45518921 8.874962625 8.850750181 8.823633176 8.726446216 8.701159126 8.85139643 8.88359116 8.823463341 8.972376765 220924626 hrcA Stress Heat shock Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 8.588567654 8.682176155 8.477454959 7.742174865 7.777917783 8.056721891 7.652431946 7.808241752 8.01398683 197782340 TerC Metal Resistance Tellurium Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 9.090893088 8.959893868 8.691509566 8.974235518 8.926045513 8.716544964 8.638769548 9.065845899 8.711892481 9.009910378 8.885304009 8.518040048 258405360 katE Stress Oxygen stress Desulfohalobium retbaense DSM 5692 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium;species:Desulfohalobium retbaense; 9.589421561 9.146983859 9.414896324 8.936556386 8.987487924 8.954867514 9.402853535 8.974935287 9.269828488 9.000818121 9.066484836 8.965772765 119669935 cydB Stress Oxygen limitation Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 9.307838932 9.209701153 9.457612059 8.710663349 8.794834027 8.518514656 8.40814769 8.163918724 8.528075423 8.451555538 8.591479298 239523555 SMR_antibiotics Antibiotic resistance transporter Helicobacter pullorum MIT 98-5489 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter pullorum; 8.667956241 8.619111798 8.736886697 8.140741345 8.272406541 7.804041929 7.94398604 7.834041896 8.168872303 8.048322556 8.231723686 8.151390849 209546214 mer Metal Resistance Mercury Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.919437677 7.712243957 7.916443189 8.011151453 7.813139664 8.136881604 7.765565052 7.82276779 7.962844701 241365981 narI Stress Oxygen limitation Acidovorax delafieldii 2AN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax delafieldii; 8.656729779 8.613813511 8.821803654 8.299374203 8.308443217 8.14134028 7.924486635 8.164715581 8.281940836 8.278523843 8.194095154 8.369059549 207725188 nagG Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia solanacearum MolK2 8.12640946 7.99174784 7.976134974 7.900458314 8.569921313 8.447988955 8.26280603 7.59966532 8.36003547 27381531 PobA Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 8.943382395 8.810393344 8.928694599 8.413009006 8.398164806 8.356976588 8.528127239 8.652777564 8.637892054 8.618650155 8.710370755 8.679153151 229829086 obgE Stress Radiation stress Shuttleworthia satelles DSM 14600 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Shuttleworthia;species:Shuttleworthia satelles; 8.729705316 8.611851677 8.737621509 7.907339742 7.736357163 7.960630659 7.415443224 7.378124056 7.882346647 7.663019441 7.656523714 8.074843501 218757603 dsrB Sulphur sulfite reductase Desulfovibrio vulgaris str. 'Miyazaki F' 8.505808713 8.567157553 8.874131077 8.843422463 8.690034913 8.413642297 8.532467045 8.958914478 8.757534558 8.655254085 8.37290057 8.856501233 242228233 type_III_secretion virulence secretion Clostridium cellulovorans 743B superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium cellulovorans; 9.99656932 10.107336 9.988245488 9.201378794 9.230464541 9.280433958 9.181036144 8.96822765 9.263033622 9.138868334 9.266562394 9.569672698 190333368 ara Carbon cycling Carbon degradation Hemicellulose Geobacillus stearothermophilus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 9.19201072 8.598041086 9.119478615 8.790354438 8.70282509 8.656089891 9.0280597 8.744599604 8.869114663 8.39243116 8.567775124 8.472646715 89893343 dmsA Organic Remediation Others Desulfitobacterium hafniense Y51 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 9.169491923 9.163100428 9.227006645 9.074511147 8.863130745 8.915851175 8.602582785 8.942586414 8.771833344 8.956090048 9.129134219 9.034183926 261371594 mannanase Carbon cycling Carbon degradation Hemicellulose Fibrobacter succinogenes subsp. succinogenes S85 superkingdom:Bacteria;phylum:Fibrobacteres;class:Fibrobacteres;order:Fibrobacterales;family:Fibrobacteraceae;genus:Fibrobacter;species:Fibrobacter succinogenes; 8.217818667 8.755368865 8.76493261 7.793773661 7.898418115 8.216885534 8.415636158 8.682991213 7.87880209 7.675213179 8.216299256 111024870 xylJ Organic Remediation Aromatics BTEX and related aromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 10.79774238 10.81893798 10.78025102 10.68607716 10.59243334 10.44474985 10.52408399 10.79894278 10.72787425 10.83274639 10.84497326 10.9908409 212171398 alkB Organic Remediation Other Hydrocarbons Alcanivorax sp. S8-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 8.343177487 8.341714555 8.422612632 8.286349145 8.035106512 7.788072286 8.244521521 8.455493549 8.496380366 8.088584866 8.05007919 7.956440492 194350066 xylC Organic Remediation Aromatics BTEX and related aromatics Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 9.05157849 8.951150154 8.707874665 8.36623099 8.221925526 8.191117205 8.436745831 8.285739478 8.692206734 8.416077878 8.560394341 8.175965098 167565535 nmoA Organic Remediation Aromatics Nitoaromatics Burkholderia oklahomensis EO147 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia oklahomensis; 8.56938829 8.126516709 8.32580085 8.719589241 8.660300239 8.36286906 8.75559788 8.651445148 8.534012121 8.680880338 8.207666705 8.671138481 104783571 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 8.698688519 8.603175402 8.55785269 8.795311742 8.643212384 8.70235 8.555635358 8.791833413 8.618286479 8.883678533 9.023280934 8.565024323 237846168 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.568383599 8.647013543 8.393026516 8.287199211 8.256706731 8.567390162 8.552948236 8.70231799 8.626721986 8.834662468 8.685227876 8.844101125 15807970 pcc Carbon cycling Carbon fixation Deinococcus radiodurans R1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 8.466614309 8.200893871 8.44184058 7.792039272 7.634477663 7.785752977 7.892427913 7.414771513 8.007295405 7.695603001 7.71390116 84392518 phn Organic Remediation Herbicides related compound Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 10.10457933 9.850666936 10.21510899 10.19120746 9.933612121 9.547661937 9.793976045 10.21800758 9.849538111 10.13945006 10.00533418 10.25297785 172040574 sigma_70 Stress Sigma factors Corynebacterium urealyticum DSM 7109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium urealyticum; 8.500668552 8.525775863 8.31405439 8.046890555 8.027959505 8.342387608 8.512574214 8.530019249 8.575118799 8.121235107 8.080009433 8.17943443 182679594 CopA Metal Resistance Copper Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 9.171213519 8.681120049 8.979371474 8.346027103 8.251367231 8.816754622 8.824297393 121608344 vanA Carbon cycling Carbon degradation Others Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 8.937809035 8.783819915 8.920659427 8.448636319 8.245406932 8.447595007 8.193593961 7.985819008 8.498129117 8.13498353 8.11746848 8.441764944 134093298 gyrB other category gyrB Herminiimonas arsenicoxydans 8.912387703 8.596463172 9.191989102 8.289328465 8.30919909 7.993960014 49473734 grpE Stress Heat shock Bartonella quintana str. Toulouse superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella quintana; 8.451956821 8.312379401 8.427623556 7.448165198 7.642656506 8.278681627 7.935617519 7.754155206 8.037352769 7.817888083 7.786369426 7.692255923 5458471 pstB Stress Phosphate limitation Pyrococcus abyssi GE5 9.285979492 9.13863114 9.520839498 8.552246455 8.470416178 8.407291638 8.275081962 8.373533591 8.115322775 8.295659191 8.446853759 8.782966968 169846011 phenol_oxidase Carbon cycling Carbon degradation Lignin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 8.383256031 7.925785251 8.241880739 8.208121716 8.243245365 8.188680523 7.515910062 7.950304351 7.932097344 7.893379053 7.943069972 7.734046351 227479910 SMR_antibiotics Antibiotic resistance transporter Synechococcus sp. CC9311 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.446056828 8.036132125 8.552810338 8.121980179 7.758259497 7.921577367 7.984157945 8.430274275 209906017 AceA Carbon cycling Carbon degradation others Enterobacter cancerogenus ATCC 35316 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 8.470344673 8.337510292 8.708215477 8.653439264 8.444090521 8.349307596 8.224112044 8.597159914 8.509885528 8.56077005 8.647038217 8.412872487 85720869 narG Nitrogen Denitrification Enterobacter cloacae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 9.229375424 9.039056869 8.383837657 8.411025929 7.933741244 7.784115231 8.259613962 8.547972692 8.374087535 8.395500947 21218771 narH Stress Oxygen limitation Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.767096768 8.655381041 8.518811681 8.290067605 8.570113359 8.595022038 8.979279267 7.899550295 8.817791577 8.376935284 8.340334621 8.475048479 1208738 tutFDG Organic Remediation Aromatics BTEX and related aromatics superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 8.33932702 8.398097998 8.351208213 7.878652797 7.872208712 7.690152094 7.419200206 7.426563345 7.733627075 7.537154082 7.943621407 160898791 alkH Organic Remediation Other Hydrocarbons Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 9.777286012 9.798294523 9.697092042 9.404363942 9.399381195 9.018715614 9.290206861 9.53195539 9.321795487 9.47031756 9.492137135 9.535479321 153894158 CopA Metal Resistance Copper Halorubrum lacusprofundi ATCC 49239 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 9.51965311 9.528169078 9.576800931 8.837522366 8.784860914 8.643004624 8.859568311 8.728462127 8.976425549 8.588784907 8.506231788 8.942719622 171057132 PobA Organic Remediation Aromatics Aromatic carboxylic acid Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 8.552375461 8.550697421 8.528450678 7.941480218 8.018825712 8.337763912 8.759796959 7.870890976 8.789917083 8.267246036 8.140262705 8.371097519 83308707 pmoA Carbon cycling Methane Methane oxidation Methylocapsa acidiphila superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocapsa; 8.852845486 9.005009852 9.096186117 8.466105155 8.282592735 8.325070723 8.693755092 8.59208689 8.956785261 8.66160801 8.491600395 8.535174085 159046351 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 9.148161402 9.23976691 9.328534834 8.606712841 8.504251488 8.550851056 8.555524123 8.725339957 8.660206033 8.679738652 8.66709622 8.928779097 27382379 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.511192689 8.492047212 8.907144682 8.205965359 7.763853047 8.144813472 7.847916449 7.40346337 7.660104019 7.722884317 8.042296212 94554094 ZntA Metal Resistance Zinc Deinococcus geothermalis DSM 11300 9.132376044 9.14809902 9.1065581 8.591916941 8.561740441 8.507870441 8.342947558 8.524097105 8.361122087 8.381259132 8.329198109 8.56898562 221206046 iro virulence Burkholderia multivorans CGD2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 9.057644568 8.461572487 8.22163308 9.376608907 9.445678652 9.017243865 9.304941868 9.099493728 8.764274473 9.084248042 8.81621894 157699918 ahpC Stress Oxygen stress Arcobacter butzleri RM4018 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Arcobacter;species:Arcobacter butzleri; 6.753887937 7.060902985 7.09578435 7.595883582 35210351 gyrB other category gyrB Sulfobacillus thermosulfidooxidans superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Sulfobacillus; 8.208186378 8.225452917 8.490519638 8.220860434 8.648217528 8.020433154 194546075 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas aeruginosa C3719 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 9.514205552 8.822338614 8.619507755 9.124068116 8.881854219 8.885199137 8.915212129 8.405904136 8.798842528 8.769804754 8.505089502 125621694 CopA Metal Resistance Copper Vibrio cholerae V51 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 8.900234265 9.205028588 8.85058482 8.158284511 8.998626512 9.19654637 9.12641218 9.089960905 8.877687962 8.877696822 8.721937358 87135588 amyA Carbon cycling Carbon degradation Starch Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 9.116038256 9.434403507 9.361383845 8.996297036 8.734046598 8.733054769 8.588544889 8.697515382 8.673588836 8.558605057 8.578127685 8.823332361 205373926 pcc Carbon cycling Carbon fixation Bacillus coahuilensis m4-4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coahuilensis; 9.10481777 8.697351138 8.939871033 8.149872923 7.977240129 7.920601618 8.065564768 8.108827125 8.000326051 8.247246163 8.092542889 8.087028297 193214634 pstB Stress Phosphate limitation Chloroherpeton thalassium ATCC 35110 8.250984189 7.863138173 7.125754999 7.105309268 7.324517288 7.5932343 7.212498058 7.026114218 7.149081696 7.073123709 209401634 narG Nitrogen Denitrification uncultured bacterium 9.010216012 9.057620901 9.23162446 8.768400136 8.728895409 8.54086531 8.753435386 8.78944334 8.57360288 8.814212441 8.732845349 8.724286667 111614726 bclA Organic Remediation Aromatics Aromatic carboxylic acid Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 9.975580401 9.92306306 10.0615034 9.454112591 9.321203594 9.129179813 9.132165249 9.367571549 9.121990871 9.373490306 9.255808821 9.5270501 99080201 pimF Organic Remediation Aromatics Aromatic carboxylic acid Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8.439592987 8.317086665 8.458503712 8.854229495 8.425508428 7.971582031 8.256751613 8.286327623 8.6011722 8.559473234 8.109592906 72120537 silC Metal Resistance Silver Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.555906065 8.078214056 8.284752061 8.671014218 8.165508848 8.513995361 7.852965052 8.532626849 8.14434125 8.212595989 8.711097828 8.394626174 224027836 APS_AprA Sulphur adenylylsulfate reductase uncultured alpha proteobacterium 9.399199143 9.577631757 9.449919565 8.4490113 8.292080783 8.747169817 9.326511649 8.55728362 9.311583501 8.60289719 8.599900524 8.470674276 56314072 fnr Stress Oxygen stress Aromatoleum aromaticum EbN1 9.289924686 9.327613171 9.272609055 8.83346942 8.88620029 8.591835434 8.704616536 8.850253027 9.023653077 9.041912225 8.87184669 8.911795655 158520534 pilin virulence pilin Desulfococcus oleovorans Hxd3 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus;species:Desulfococcus oleovorans; 8.550971916 8.505156559 8.599778145 8.012539798 7.928350459 8.058923559 8.205635508 7.834473168 7.992637053 7.968690308 8.321885414 221723533 pcc Carbon cycling Carbon fixation Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.082274222 8.015658295 7.199959006 7.533765421 7.626229846 7.905378998 7.493336681 7.456609986 7.395636856 7.819596167 197658973 nagG Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. PY11 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 9.04006055 9.088800519 9.332758848 8.780594219 8.786285943 8.641321383 8.887451411 8.75945465 8.619260946 8.805157691 8.69611266 8.887960396 124266177 pimF Organic Remediation Aromatics Aromatic carboxylic acid Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 7.992746296 7.874547526 7.492397548 7.295587359 7.366808963 7.458185825 7.87319172 7.869471535 7.971677932 119387617 ahpF Stress Oxygen stress Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.507420566 8.23113538 8.534379557 7.942902389 7.851738136 8.121426732 7.977037336 7.70126242 8.349329539 7.854603524 7.654419227 8.215857135 242803228 katE Stress Oxygen stress Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 8.294672161 8.378133798 8.259145797 8.275363911 8.231832252 7.962839501 8.313295684 8.379410536 8.029732079 8.251297246 8.233267878 8.127887427 262208466 fnr Stress Oxygen stress Comamonas testosteroni CNB-2 8.538536643 8.03817414 8.048511064 8.015393212 8.073011435 8.359811527 7.709147648 8.065149206 8.097834326 7.930681305 8.218929771 7.958761548 222080905 catB Organic Remediation Aromatics BTEX and related aromatics Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.701713075 8.688703062 8.706844728 7.899696926 8.249917227 8.682310582 9.037433547 8.353330731 8.8411115 8.615595813 8.858276998 8.887492484 153901527 exaA Organic Remediation Chlorinated solvents Methylobacterium extorquens PA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 9.063623778 9.111692972 9.283356529 8.79370461 8.699959326 8.604666206 8.387450208 8.527243485 8.498778567 8.572044181 8.436672101 8.849731041 254970805 sox Sulphur Sulphur oxidation Acidithiobacillus caldus ATCC 51756 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 8.82283487 9.015314948 9.073398216 9.161644837 9.068574798 9.129745821 9.227821249 9.288699308 8.917868284 9.482960144 9.215235489 8.770259092 169762006 AceB Carbon cycling Carbon degradation others Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.96104873 8.994656114 8.673680688 8.534655329 8.246838684 8.29395833 8.405782187 8.133392211 8.530970842 8.136850068 7.956601677 8.263757637 71838962 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 8.944423307 8.692514929 8.988195618 8.373266026 8.161329674 8.011086679 8.276739543 8.416318213 8.572558457 8.25084482 8.113984271 8.066773291 257045870 pstB Stress Phosphate limitation Candidatus Accumulibacter phosphatis clade IIA str. UW-1 9.859559697 9.755850731 9.369285986 9.81398989 9.874097483 9.88002982 10.19134886 9.847932772 9.771602273 9.533735236 9.634112435 9.489389169 71841644 narG Nitrogen Denitrification Pseudomonas stutzeri superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.11472352 8.375054255 8.064343904 8.151367939 7.730582832 7.930320949 7.932207374 8.251287963 7.97164828 7.594824315 7.572708234 197103489 MFS_antibiotic Antibiotic resistance transporter Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 8.603040706 8.50140551 8.430803412 8.137427087 7.742218085 8.081021307 7.956385231 7.609080209 8.297673024 7.702230048 7.805561934 8.075388452 116651600 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia cenocepacia HI2424 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 9.147627722 9.265968495 9.21487328 9.483255212 9.439197731 9.262380377 9.486194458 9.729019483 9.164307695 9.623003981 9.234592615 9.239931438 146406836 bphA Organic Remediation Aromatics Polycyclic aromatics Bradyrhizobium sp. BTAi1 8.575698272 8.535192413 8.773473012 8.121137808 8.140008605 8.339875209 8.415227438 8.203148047 8.593898131 8.385618722 8.285205821 8.223844219 148553490 hrcA Stress Heat shock Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.395413581 8.425322176 8.427009849 7.972966602 7.911023702 8.011496048 8.644404262 7.943986835 8.392040207 7.980066556 8.091175809 7.815121605 256817939 amyA Carbon cycling Carbon degradation Starch Streptomyces griseoflavus Tu4000 8.357655176 8.322371398 7.616946583 8.002841893 8.036525361 7.579609597 8.07875484 7.739935075 7.735572422 7.642323513 172036081 pstB Stress Phosphate limitation Cyanothece sp. ATCC 51142 8.369970552 8.184047537 8.250318915 7.7783393 7.640759364 7.593398586 7.312780005 7.433803058 7.809280372 7.370657193 7.483101314 7.848678848 159046016 pcaG Organic Remediation Aromatics Other aromatics Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 7.771755906 7.662641003 7.455999944 7.462586561 7.758658002 7.80766718 7.827786587 7.817103429 7.852037922 242120560 narI Stress Oxygen limitation Desulfovibrio salexigens DSM 2638 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio salexigens; 7.227709254 7.580146777 7.241110285 23494142 pcaG Organic Remediation Aromatics Other aromatics Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 9.245513733 9.432000183 9.341649408 8.997297834 8.754773745 8.959484445 9.076124344 8.901258999 8.828149771 9.074866282 9.151793387 9.153473773 197625341 pstA Stress Phosphate limitation Cyanobium sp. PCC 7001 8.762677739 8.802985496 8.892305941 8.573731278 8.319840891 8.408767566 8.33519935 8.182998742 8.262208321 8.360326162 8.409906844 8.324216638 17385516 narG Nitrogen Denitrification uncultured bacterium 8.780189339 8.47383311 8.893291882 8.114454761 7.990211749 7.853910156 7.385991121 7.609006196 8.023035093 7.775689906 7.603029586 8.063262128 218463575 B_lactamase_C Antibiotic resistance Beta-lactamases Rhizobium etli Kim 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.8361527 7.785283913 8.029884529 7.896901307 7.983881772 8.406475119 7.887615365 8.243124496 7.756158797 214028433 Tet Antibiotic resistance other Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 11.00664967 10.80069422 10.86430573 10.61685583 10.63037529 10.6877409 10.76036569 10.59946586 11.04758495 10.72394416 10.90168368 10.70288168 77380730 gyrB other category gyrB Pseudomonas fluorescens Pf0-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.718509304 8.589221588 8.676146685 8.366235832 8.058894101 7.984870489 7.911901358 7.986107208 7.956326158 7.816482534 8.238094894 171996162 CopA Metal Resistance Copper Burkholderia ambifaria MC40-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 8.36973266 8.161257218 8.275750312 7.453972723 7.842141686 8.085865741 8.156646617 7.368669328 8.252705544 7.754642128 7.723642386 7.695022 93454938 APS_AprB Sulphur adenylylsulfate reductase delta proteobacterium MLMS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 8.820878709 8.555026607 8.499544279 8.511416 7.816458753 8.332572666 8.111865679 8.154439559 197715433 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 9.007066842 9.064641158 9.070755358 8.339972087 8.31454458 8.553363944 8.046859083 8.404683588 162146364 exaA Organic Remediation Chlorinated solvents Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 11.19367494 11.14778023 11.14724758 10.94907931 11.09668326 10.99961132 10.94122307 10.83073466 11.41633537 11.0108431 11.14390124 11.06639008 71158806 ChrA Metal Resistance Chromium Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 7.56872977 7.509474546 8.070393328 7.512356925 8.018740504 8.041131601 7.76670631 7.751705976 8.133606757 237501066 pstB Stress Phosphate limitation Tolumonas auensis DSM 9187 7.502175903 7.366961809 7.171892425 6.672461188 7.078232101 7.524627138 7.269791193 7.29330241 197710983 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 9.066996512 9.219717868 9.31053679 9.009132305 8.995066115 8.875363328 8.807508028 8.683952802 8.891409861 8.932218161 8.956808654 8.95680606 260767191 sigma_38 Stress Sigma factors Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 9.72755792 9.565160146 9.450403093 9.403728036 9.214533701 8.965702286 9.336220402 9.646452102 9.547687132 9.493603038 9.463389269 9.600434961 45649073 bclA Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. CIB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 9.721159327 9.623760027 9.532246262 8.543092409 8.933405331 8.833466272 8.691771232 8.834102875 9.131887506 9.235342752 9.338700283 209401910 narG Nitrogen Denitrification uncultured bacterium 8.450649655 8.179099864 7.919472506 8.26746512 8.417571606 7.944017721 7.95341355 8.59839999 8.138695578 8.133497078 7.942836825 8.278437326 120607101 CopA Metal Resistance Copper Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 8.542824619 8.506458459 8.185259749 8.236048547 8.08186619 8.095973644 7.768848726 7.701813241 8.293985538 7.73812422 7.793589778 8.219255429 108801912 linB Organic Remediation Pesticides related compound Mycobacterium sp. MCS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 9.383184064 9.605570993 9.436146632 9.040440374 9.11190449 8.993251016 9.003017897 9.208523179 8.863569669 9.180184788 9.122451758 9.267746951 225162337 Tet Antibiotic resistance other Clostridium hylemonae DSM 15053 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 8.848733652 8.757586805 9.024381267 8.341795985 8.336884592 8.390282332 8.525892513 8.421296333 8.840479028 8.271663391 8.37787792 8.482048151 153010862 cydA Stress Oxygen limitation Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 8.859522919 8.531493699 8.542745236 9.280642573 8.745210204 8.441635876 9.055080357 9.199698404 8.906011141 9.123469335 9.098450647 8.554459194 227069639 NiR Nitrogen Assimilatory N reduction uncultured archaeon 8.7703385 8.895992381 9.099523319 8.289243196 8.426965116 8.305886091 8.225393266 8.449478712 8.460094421 8.643848229 8.506963838 8.597039843 62149132 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.512297754 8.252618569 8.334650542 8.092249113 8.155593819 8.13492666 8.171271578 8.146440739 8.447039929 8.189854947 8.32170026 8.151669721 197106259 fnr Stress Oxygen stress Phenylobacterium zucineum HLK1 8.967335406 9.054119861 8.971162122 8.294106274 8.675114598 8.624177447 8.900832938 8.275049573 8.753490635 8.407562953 8.552720318 8.310004644 225212310 amyA Carbon cycling Carbon degradation Starch Roseburia inulinivorans DSM 16841 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia inulinivorans; 8.396376285 8.301658126 8.548590213 7.66526184 7.657842072 7.725920222 7.373548215 7.273769161 7.896578496 7.719002413 7.685083356 7.833553003 116610035 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8.091900241 7.799285173 8.507347508 7.642518792 7.563211712 7.462433608 7.253946148 7.602978814 7.32298273 7.172223592 148273338 linB Organic Remediation Pesticides related compound Clavibacter michiganensis subsp. michiganensis NCPPB 382 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 8.963765188 8.808877796 8.394585056 9.215235555 9.096447754 9.063728458 8.821770156 9.349109016 8.90461021 9.153441202 9.277734246 9.064030624 85707406 CopA Metal Resistance Copper Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.780693 8.494082178 8.865154207 8.187483278 8.043231048 8.131489579 8.012390962 7.836543765 8.363597046 7.562704599 7.677521772 8.056570803 158109348 hrcA Stress Heat shock Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 7.940301131 7.966700271 8.173551133 7.613480695 7.9824725 7.964091827 7.898534854 7.868279999 7.723382208 29604989 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 8.321914824 8.05416828 8.135695696 8.552773305 8.309824766 8.262979694 8.111053073 8.570245778 8.385684173 8.513449293 8.418547461 8.335531021 239505939 pstC Stress Phosphate limitation Kosmotoga olearia TBF 19.5.1 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Kosmotoga;species:Kosmotoga olearia; 9.401021244 9.278647472 9.216186344 8.754946024 8.609181095 8.587439317 8.522385944 8.393980885 8.451325884 8.521698057 8.612372492 8.810613221 119957138 SMR_antibiotics Antibiotic resistance transporter Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.653014585 8.697300343 8.52022728 8.346105972 8.318531743 8.270096416 8.017333755 8.455256679 8.293207997 8.44941771 8.468101634 8.788674126 42522577 phoB Stress Phosphate limitation Bdellovibrio bacteriovorus HD100 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 9.562230434 9.588487992 9.669628017 8.948395303 8.932202336 8.784709914 8.614997507 8.697980111 8.681410247 8.654685501 9.002723672 14025121 mer Metal Resistance Mercury Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 8.8440868 8.862533036 8.836933114 8.672543216 8.697925097 8.247944957 8.41115444 8.597483107 8.527941047 8.609809782 8.637628479 67543188 Arylest Organic Remediation Aromatics Other aromatics Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 8.654041079 8.875918316 9.104758182 8.363095218 8.184206613 8.210568868 8.472065157 8.363168888 8.442724624 8.554282571 8.519694601 166862456 SMR_antibiotics Antibiotic resistance transporter Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 9.260302292 9.216469573 9.470379171 8.71659193 8.691065147 8.49659171 8.690312823 9.066024872 8.908258853 9.050083557 8.947564411 9.18671329 170140687 MFS_antibiotic Antibiotic resistance transporter Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 8.679991093 9.010276785 8.918723332 8.185364527 8.692979883 8.792376013 9.193852671 7.639004991 9.247031223 8.476634719 8.074851993 194346653 B_lactamase_C Antibiotic resistance Beta-lactamases Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 8.552451646 8.38353889 7.983553233 8.086175322 7.825366276 7.920007244 8.139432679 8.063646711 8.255424856 8.059784356 8.055774109 2811132 AceB Carbon cycling Carbon degradation others Myxococcus xanthus superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 8.734081505 8.73126893 8.563437003 8.61381016 8.664499097 8.610885033 8.664726756 8.805121466 8.800116704 9.042856488 9.001283987 8.801035089 255293460 fnr Stress Oxygen stress Propionibacterium sp. oral taxon 191 str. F0233 8.999866804 8.872301019 8.977512812 8.193313812 8.437361035 8.029083732 7.979371899 7.739179238 8.220563823 8.041421006 7.795762238 8.246731734 189423658 phoB Stress Phosphate limitation Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 7.892315674 8.259637227 7.590426915 7.649696183 7.811192667 7.662519337 7.821727443 7.656681176 7.922092088 8.025927161 8.061911545 86139485 pheA Organic Remediation Aromatics Other aromatics Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 9.07294741 8.667279217 8.452669254 9.147720952 8.489999462 8.354550232 8.763714546 8.675103187 8.653617179 8.615925095 8.158376041 10956961 benD Organic Remediation Aromatics Aromatic carboxylic acid Novosphingobium aromaticivorans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 8.471626319 8.298526839 8.185570157 7.661358991 7.98115846 7.769312431 7.843802488 7.84656792 8.183964886 7.98567343 7.841661106 7.724907823 94497748 iro virulence Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.369604556 8.185583091 8.499762551 8.141932623 7.87464188 8.195847799 7.56009416 7.333369715 7.473895183 7.50359323 7.805230924 7.6192188 226095722 B_lactamase_C Antibiotic resistance Beta-lactamases Brevibacillus brevis NBRC 100599 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus brevis; 8.786192366 8.741822134 8.64650807 8.523665447 8.483433399 8.057411499 8.261470273 8.24114366 8.342267763 8.427540102 8.140384323 227069655 NiR Nitrogen Assimilatory N reduction uncultured archaeon 8.578396584 8.409292053 8.275666285 8.744977194 8.545879614 8.375387194 8.372338555 8.740781112 8.690757516 8.614935833 8.696955218 8.645207136 157850445 nahA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 9.5154604 9.220637938 8.568514141 8.548853351 9.153284524 9.305767193 9.069061586 9.210966029 9.147506091 9.233061282 163858674 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 8.341917605 8.440968152 7.964740452 8.066209318 8.13185411 8.288170947 8.734533252 8.374830215 8.373273254 8.325061792 91189922 merP Metal Resistance Mercury Vibrio alginolyticus 12G01 8.619889796 8.311657732 7.458603669 7.535737898 7.843687405 7.851045363 7.640809039 7.75545914 7.592456712 8.044919214 151359320 ureC Nitrogen Ammonification Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 9.096571197 9.018180805 8.850779847 8.623265247 8.716683177 8.818222235 9.051989382 8.845412853 9.052378078 8.672987562 8.792112448 8.690661413 239801525 rubisco Carbon cycling Carbon fixation Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 9.35705032 9.240557159 8.91777875 9.046768997 9.021594415 8.700137104 8.757701754 8.928991311 9.121763247 9.072819121 9.157332219 9.222210844 183980348 oxyR Stress Oxygen stress Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 9.08443513 9.092676577 9.14235127 8.556640409 8.290813236 8.346947006 8.383787294 8.306635094 8.340159447 8.252879112 8.537363214 115522232 CorC Metal Resistance Cobalt Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.882995728 10.01955542 10.09493783 9.273611219 9.5111863 9.432782814 10.28493641 9.727715583 10.30288844 9.501913723 9.480337841 9.544478655 167666235 ahpF Stress Oxygen stress Anaerotruncus colihominis DSM 17241 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Anaerotruncus;species:Anaerotruncus colihominis; 8.69330066 8.928256405 9.161075017 8.96543181 8.821084906 8.369533118 8.532454587 8.723423475 254442405 mannanase Carbon cycling Carbon degradation Hemicellulose Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 8.622977245 8.22874008 8.501909232 7.985747322 8.639904125 8.561378678 8.600830061 7.110571315 8.931554966 7.788146732 7.788474604 7.934252496 217330181 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.316679737 8.430051307 7.556052313 8.410916904 8.290862981 8.276791303 8.336471835 8.493848864 8.490213661 8.749907695 119856217 Arylest Organic Remediation Aromatics Other aromatics Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.508854703 8.979957972 9.248126448 9.265596219 9.127159142 8.857624702 9.48228755 9.081282939 8.94559408 9.300822906 8.966058104 220708574 mer Metal Resistance Mercury Geobacillus sp. Y412MC61 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.569455768 8.688868092 8.434869299 8.184422025 8.242240761 8.279620198 7.952910899 7.745364177 8.33347665 7.840705098 7.828561974 8.255793441 134101899 TerC Metal Resistance Tellurium Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 9.584773794 9.36061943 9.796707664 8.714253216 8.979900447 8.492544569 8.556549143 8.383445267 8.483797949 8.433826846 9.007976535 4877825 xylXY Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida 8.697950714 8.753962167 8.705171388 8.170376522 8.410782085 8.443719826 8.925340348 8.378078057 8.643506702 8.607449232 8.399705402 8.648391787 134102796 pimF Organic Remediation Aromatics Aromatic carboxylic acid Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 8.969306678 8.702500932 8.926012414 8.533611145 8.485852626 8.133155814 8.41990984 8.753586476 8.757429414 8.559637898 8.395260715 8.524468759 121712479 BpH Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 8.703837934 8.163290269 8.316951075 8.630513215 8.391687941 8.12777229 8.550201456 8.442488977 8.488775361 8.510584596 8.274549726 8.305803386 218778453 adpB Organic Remediation Pesticides related compound Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 8.357460703 8.39634589 8.364616019 7.472716654 7.935577481 8.283105311 8.250746029 7.136539702 8.507133561 7.693058274 7.854431136 7.94730728 94495092 amyA Carbon cycling Carbon degradation Starch Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 10.62851543 10.38388462 10.32346329 10.20091454 10.13827926 10.16608251 10.52393735 10.04205359 10.71075771 10.10585302 10.0395448 10.08242287 123964955 ureC Nitrogen Ammonification Prochlorococcus marinus str. MIT 9303 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 9.646935341 9.540561446 9.656952002 8.977187436 8.696270311 8.758098312 8.5760984 8.558693307 8.654690045 8.656685209 8.836228433 9.173076194 72119125 MFS_antibiotic Antibiotic resistance transporter Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 9.149509013 9.159499089 9.25146215 8.405677326 8.492018808 8.623509298 9.177303905 8.805126304 9.287168133 8.578472516 8.636304321 8.458857997 212528202 BpH Organic Remediation Aromatics Aromatic carboxylic acid Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 8.226952828 8.37096076 8.724734024 7.917267096 7.645495781 7.789090315 7.57186317 7.277382712 8.169411555 7.674818179 7.414579248 7.817642989 45386199 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 9.017370918 9.030824849 9.019825482 8.004972268 7.981468399 8.273395337 8.330893602 7.909392031 8.182153359 8.035034421 8.429540398 149825377 type_III_secretion virulence secretion Limnobacter sp. MED105 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 8.572583137 8.841206993 8.929918336 7.910888167 8.603281482 9.071602922 8.392720688 9.016276131 8.969595199 8.892664222 8.971242763 188592329 bphC Organic Remediation Aromatics Polycyclic aromatics Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 10.14881459 10.0338184 9.949103536 9.545553051 9.557171742 9.464427514 9.266318633 9.454119188 9.445003611 9.505364945 9.522527453 9.644589643 6048994 xylG Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. RP007 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 9.269367853 9.243917756 9.439113987 9.459084794 9.328648837 8.914121044 9.041175313 9.694180596 9.105704338 9.741291245 9.335343695 9.447576782 254282006 glnA Stress Nitrogen limitation gamma proteobacterium NOR51-B 8.844553595 8.969387481 9.043837931 8.869477936 8.66241499 8.450672974 8.763057977 8.689228483 8.83710681 8.773203851 8.91705743 8.586464942 146329147 alkK Organic Remediation Others Dichelobacter nodosus VCS1703A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Cardiobacteriales;family:Cardiobacteriaceae;genus:Dichelobacter;species:Dichelobacter nodosus; 8.101877036 8.098444718 7.598029303 7.607572867 7.653874446 7.110073066 7.166676363 7.250819019 7.243234339 7.881320594 196166670 BchY other category chlorophyllide reductase uncultured bacterium superkingdom:Bacteria; 9.188219974 8.068271329 8.43097427 9.103283896 8.380303952 8.458942024 8.771522201 8.236639048 8.489728682 8.152475526 8.213620123 8.332992186 50842594 amyA Carbon cycling Carbon degradation Starch Propionibacterium acnes KPA171202 8.675405243 8.388490944 8.32853685 8.82374698 8.586159483 8.208887884 8.276610068 8.247547067 8.661470704 118424505 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.787446515 8.584570934 9.018337241 8.227043651 8.326526904 8.262466086 8.024483688 8.059784219 8.412320319 8.022944666 7.961377093 8.394376794 227342326 Mex Antibiotic resistance transporter Rhizobium sp. NGR234 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 8.868381414 9.102324075 8.894310774 8.392228822 8.197391698 8.482955774 8.611706563 8.197356334 8.542316914 8.134246404 8.264008197 8.441474564 39647465 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.139989255 7.64254684 7.687358583 7.834794212 7.412785299 7.586811692 7.99521816 7.483040496 8.325321746 8.34353241 7.995903211 74057997 dsrB Sulphur sulfite reductase Thiobacillus denitrificans ATCC 25259 8.618984507 8.521287585 8.71228253 8.412084823 8.426349259 8.108978198 8.292228895 8.763646656 66866389 pilin virulence pilin Bergeriella denitrificans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Bergeriella; 9.115745376 8.912791459 8.773977291 9.060732669 8.878871775 9.143705896 158447949 ChrA Metal Resistance Chromium Coprococcus eutactus ATCC 27759 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Coprococcus;species:Coprococcus eutactus; 8.277019837 8.424818392 7.582862971 7.64723339 8.13531832 7.454437916 8.471179256 7.759361228 7.898563127 187728460 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 7.287768283 7.431760233 7.320057621 7.603991834 7.431272962 7.194575779 7.478831446 30248598 sigma_32 Stress Sigma factors Nitrosomonas europaea ATCC 19718 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas europaea; 8.210828438 8.210479692 7.4739538 7.765371802 7.999393921 8.073274874 7.117620811 8.163981348 7.673799666 7.774037534 7.979332667 225044498 clpC Stress Protein stress Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 8.429516572 8.673458855 8.47430833 8.721826725 8.481313414 8.304508383 8.899892267 8.814688324 8.853083088 8.529111999 8.497355192 8.677160178 217977642 nahA Organic Remediation Aromatics Polycyclic aromatics Methylocella silvestris BL2 9.163717992 9.090660478 9.256567467 8.573929357 8.606075251 8.610723718 8.497181865 8.603543312 8.50644758 8.729875202 8.611285408 8.823294 256744245 pstB Stress Phosphate limitation Clostridium papyrosolvens DSM 2782 8.874519992 8.808771804 8.99096802 8.156165989 8.226970697 8.051985394 8.088976428 8.138448103 8.198479005 7.998868533 7.686159295 8.47084526 115378104 sigma_24 Stress Sigma factors Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 10.07388501 10.11577697 10.12789211 9.657970031 9.583627581 9.43298218 9.540195349 9.503803817 9.28874819 9.562759431 9.442811823 9.574882288 88789954 TerD Metal Resistance Tellurium Nitrococcus mobilis Nb-231 8.416896588 8.242030768 8.613082645 8.316821784 8.026568452 7.906133412 7.839447455 8.160736454 8.307877895 8.276640404 8.061340695 8.282959607 110821365 pstA Stress Phosphate limitation Rhodococcus jostii RHA1 8.78625874 8.470061598 9.047892914 8.261907023 8.497798252 8.178030888 8.343300393 7.989878821 110637836 ppx Phosphorus Phosphorus utilization Cytophaga hutchinsonii ATCC 33406 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Cytophaga;species:Cytophaga hutchinsonii; 8.022862724 8.401462216 7.511427878 7.196267844 7.279818591 7.001472902 7.386791126 7.398202736 7.150304661 7.16933379 111149084 amyA Carbon cycling Carbon degradation Starch Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 8.841372812 8.46788841 8.246054647 9.130014085 8.659940833 8.998862461 8.143256633 8.953980706 8.42337264 8.645362846 8.886645986 8.219999286 151302361 APS_AprA Sulphur adenylylsulfate reductase Desulfotomaculum luciae 8.922359618 8.827023505 8.865928655 8.557556028 8.321923767 8.173392884 8.209996401 7.914136725 8.248661807 7.995766684 7.982577276 8.406582371 256579601 pstB Stress Phosphate limitation Desulfomicrobium baculatum DSM 4028 8.934891056 8.672973283 8.698236456 8.532924895 7.806445643 7.663131862 8.077449851 8.260315173 8.326455706 8.300181053 8.017429694 8.328456353 67533725 ChrA Metal Resistance Chromium Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 7.981126912 8.131318521 7.416816369 7.62190643 7.860854381 6.920874054 8.102872412 7.549910554 7.721164227 7.849725987 261338602 amyA Carbon cycling Carbon degradation Starch Bifidobacterium gallicum DSM 20093 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 8.997930509 8.467416262 7.846604763 8.210868626 8.156408636 8.154686509 7.994959776 8.359531674 7.95004987 8.040216778 8.072637089 170748962 mer Metal Resistance Mercury Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 8.904378675 8.760607903 8.878589484 8.651881871 8.543225133 8.323437768 8.425562296 8.819602827 8.795422615 8.606664017 8.625122405 8.658356125 83592229 TerZ Metal Resistance Tellurium Rhodospirillum rubrum ATCC 11170 9.367114207 9.232920392 9.536904905 8.943759396 8.39631476 8.590665256 8.976615952 8.82676107 78518659 PobA Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.590315827 8.601555908 8.435281272 8.58636418 8.975410473 9.017276102 9.32721171 9.1117279 8.90914319 8.897130216 9.150898747 9.194676902 256769717 narI Stress Oxygen limitation Streptomyces sp. C superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.165283696 8.027315956 8.078442229 8.955966385 8.817585161 8.48722163 8.571421745 8.63260113 8.558691582 8.347457014 8.255900613 7.887229103 116670859 cap virulence capsule Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 9.463619534 9.613625161 9.608476781 9.640745762 9.274101169 9.403076627 10.0610912 9.294991387 9.771897931 9.491196542 9.628796961 9.72558262 197782202 pcpB Organic Remediation Herbicides related compound Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 9.891505971 9.564484695 9.928404662 9.105932306 8.941209554 8.882755439 9.114949635 8.941960892 8.823862966 8.907963979 9.07616502 9.235192217 170777466 TerC Metal Resistance Tellurium Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 9.073110459 9.063949154 9.270273154 8.789443663 9.011668406 9.046342488 8.337495541 8.988415537 9.164711204 8.946146647 9.112885249 8.726828735 116102872 gyrB other category gyrB Pediococcus pentosaceus ATCC 25745 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Pediococcus;species:Pediococcus pentosaceus; 8.95108111 8.654232877 9.043160495 8.219537679 8.284533485 8.218141205 8.047857923 7.916743358 8.094833553 8.081499896 7.953548727 8.503798025 145903156 CopA Metal Resistance Copper Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 8.449678728 8.369978801 8.46559936 7.807298499 7.966551635 7.759896064 7.608828153 7.482950981 7.711446428 7.508304286 7.776095974 121554515 phtA Organic Remediation Aromatics Aromatic carboxylic acid Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 8.246108972 8.095822332 8.217455931 7.840456014 7.999995243 7.825755562 8.015733611 7.811716161 7.983934693 7.536569624 7.838928695 7.599933588 226714321 sigma_70 Stress Sigma factors Laribacter hongkongensis HLHK9 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Laribacter;species:Laribacter hongkongensis; 8.309863966 8.531247254 8.553176456 8.87809801 8.593580971 8.430249216 8.706715269 8.695739313 8.707748843 8.525366794 8.51533683 211591486 CopA Metal Resistance Copper Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 9.649305123 9.584220075 9.692887595 8.615086609 8.515536849 8.508345114 8.62553781 8.130955037 218675774 APS_AprA Sulphur adenylylsulfate reductase gamma proteobacterium symbiont of Robbea sp. 1 SB-2008 8.171595033 8.115158106 8.176524357 8.169176516 8.178539953 7.979119705 8.02501959 8.309218433 8.376453174 8.219958937 8.004632305 7.908178555 226227101 sigma_24 Stress Sigma factors Gemmatimonas aurantiaca T-27 superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 8.344754857 8.192319164 7.676628051 7.691612404 8.153734456 8.533304487 8.127081463 8.27837769 7.833762982 8.120685895 8.004398052 39932996 mhpA Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces hygroscopicus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 9.299907818 9.300475348 9.61547151 9.051131891 9.020595663 8.798654075 178465698 SMR_antibiotics Antibiotic resistance transporter Streptomyces griseus subsp. griseus NBRC 13350 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 8.917636085 8.778651969 8.438419048 9.009738833 8.728919665 8.359428282 8.710720977 8.839589905 8.686373333 8.73095337 8.797945915 8.303112988 38488395 B_lactamase_C Antibiotic resistance Beta-lactamases Citrobacter murliniae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter; 8.709221621 9.162388275 8.918165534 8.557534847 8.634122312 8.566307122 8.784978759 9.069933754 8.764536078 9.16783335 8.726006237 8.665084952 218296501 fnr Stress Oxygen stress Thermus aquaticus Y51MC23 9.258001361 9.266888379 9.219714882 8.920929688 8.901073179 8.781019829 8.588793762 8.936227527 8.763814623 8.784234774 8.77943891 8.933007515 73540591 sigma_70 Stress Sigma factors Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 10.00924676 10.21672607 9.877625487 8.769751 8.8059405 8.684257891 8.806114312 8.663029675 9.120611403 9.125020325 9.226922619 47779194 T4_recomb_endonuclease Bacteria phage REPLICATION Acinetobacter phage 133 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 8.597125008 8.707479138 8.915632157 8.293401388 8.20174031 8.231809621 8.200618653 8.08204143 7.855294304 8.046164724 8.149018871 8.392378287 253690329 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 8.685037151 8.498951986 8.52239615 7.440928941 7.292454034 7.508740818 7.377084462 6.8962792 7.849316056 7.118709268 7.333998996 7.341271846 119880085 nmoA Organic Remediation Aromatics Nitoaromatics Salinispora arenicola CNS205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 8.440778311 8.621105152 8.564641405 7.914326045 7.900819331 7.943428993 7.96514098 7.432266677 7.754157583 7.778157807 7.757564132 7.939239997 23098272 pimF Organic Remediation Aromatics Aromatic carboxylic acid Oceanobacillus iheyensis HTE831 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Oceanobacillus;species:Oceanobacillus iheyensis; 9.484945871 9.368460571 9.55103371 8.676053196 8.333163247 8.574103617 8.264390214 8.178919841 8.539216414 8.465216875 8.391197598 8.784251255 146303395 ferredoxin_oxidoreductase Bioleaching Electron transport Metallosphaera sedula DSM 5348 8.788337951 8.829642037 9.00749343 8.456054658 8.669492848 8.463257906 8.522659015 9.003153723 8.818428058 8.915601895 8.825948586 8.839542939 110825676 tftH Organic Remediation Aromatics Chlorinated aromatics Rhodococcus jostii RHA1 9.355788173 9.041236789 9.333780166 8.606994256 8.554665489 8.56799361 8.373642483 8.500907118 8.492065602 8.480630658 8.512797675 8.784945337 41398045 SMR_antibiotics Antibiotic resistance transporter Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 9.57308095 9.838395402 9.354701317 9.015304274 9.319906803 9.809109186 9.784361935 9.42073591 9.701861531 9.319505451 9.846554003 9.346584132 226240190 AceB Carbon cycling Carbon degradation others Rhodococcus opacus B4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 8.98680623 9.17466086 9.266209226 8.680633933 8.821801381 8.846117069 8.938456316 8.258446264 9.121026578 8.625515019 8.553250642 8.840280648 182415127 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 8.397435933 8.497505931 8.467265716 7.901475197 7.636642208 7.812593427 7.75845814 7.767377368 7.608819584 7.654168554 239814004 fnr Stress Oxygen stress Variovorax paradoxus S110 10.39077823 10.16412303 9.959215499 10.05025097 10.01225406 9.788300323 10.10493309 9.745869188 10.29006224 9.944197423 9.860996448 9.768405321 27350588 pcaG Organic Remediation Aromatics Other aromatics Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.375052945 8.510323316 8.512648181 8.458691464 8.174685761 8.620698988 8.46546861 8.398410603 8.391248068 8.171446285 8.117251212 260606219 pilin virulence pilin Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 8.880654062 8.558802583 8.814213495 8.297125487 8.249055291 7.670727973 7.82336353 7.904207776 8.388409573 8.038025416 7.580894348 8.338113964 158312576 tfdA Organic Remediation Aromatics Chlorinated aromatics Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 7.791410787 7.945259967 7.622769931 8.19824244 7.979729182 7.89522491 8.095313872 7.971422547 78062692 AmiE Organic Remediation Aromatics Other aromatics Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.470460501 8.316153607 8.351451679 8.321619903 8.166512352 8.148619109 8.039532204 8.084387416 8.341374102 8.215190627 8.046323129 8.152269792 83852898 sigma_70 Stress Sigma factors Oceanicaulis alexandrii HTCC2633 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis;species:Oceanicaulis alexandrii; 7.225166284 7.196062427 7.698481435 7.510880757 7.164987263 8.123816295 7.300413195 7.339100609 7.72441295 126721479 phn Organic Remediation Herbicides related compound Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.820383218 8.619843778 8.942370773 8.009549013 8.01020235 8.07739517 7.635683046 7.695073134 8.074870042 7.886482428 8.088866072 84043021 pcaG Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 9.030097563 9.095946958 9.149311343 8.781155905 8.70820536 8.732847065 8.793365738 9.038002051 8.708366422 8.86611092 8.937532578 8.908556307 120592253 pstB Stress Phosphate limitation Polaromonas naphthalenivorans CJ2 8.695000689 8.593371878 8.461861668 8.710430512 8.509603126 8.234992535 8.544359258 8.257386306 8.426160965 162568549 aoxB Metal Resistance Arsenic uncultured bacterium superkingdom:Bacteria; 9.249169728 9.179759332 8.764591282 8.161928909 9.013488608 9.031870639 9.535999008 8.679082921 9.097944371 8.4617269 8.950669275 8.452340118 114227789 fnr Stress Oxygen stress Alkalilimnicola ehrlichii MLHE-1 9.421714476 9.285561906 9.457170673 8.659263938 8.806784505 8.607328202 8.598449467 8.436680271 8.614047495 8.502477859 8.479019962 8.879484976 261285510 proV Stress Osmotic stress Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.220090157 8.164213931 8.485465828 8.021974088 7.924274258 7.754133784 7.658857223 8.413009736 7.648424728 7.700621383 8.100399617 14318319 B_lactamase_C Antibiotic resistance Beta-lactamases Escherichia coli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 9.291727705 9.112311722 9.32068321 8.893402677 8.856204495 8.736049907 8.921743283 8.802269262 8.850638553 8.720817044 8.60584645 8.830526809 206687509 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 10.83956163 10.70377727 10.87626871 9.878439204 9.578537577 9.740742843 257203551 ara Carbon cycling Carbon degradation Hemicellulose Roseburia intestinalis L1-82 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia intestinalis; 9.16191713 8.978693879 9.023899285 8.538533504 8.553444916 8.469208819 8.289509928 8.452311609 8.392863721 8.247230573 8.311016449 8.512200203 254266033 sigma_24 Stress Sigma factors Methylobacterium extorquens DM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 8.49089212 8.402540663 8.4032186 8.338425045 8.009983034 8.262357853 8.53889288 8.45608715 8.542265292 8.377225429 8.559715437 149186736 phdCI Organic Remediation Aromatics Polycyclic aromatics Erythrobacter sp. SD-21 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 9.014935628 9.036231351 9.121342411 8.639587022 8.694222931 8.704054737 8.389986586 8.935253891 8.460257382 8.833537741 8.939525715 8.900814989 254788460 xylA Carbon cycling Carbon degradation Hemicellulose Teredinibacter turnerae T7901 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 8.836008747 8.766283202 8.837424323 8.016710328 8.139131106 8.470576474 8.878022845 8.679668777 9.179155677 8.317546054 8.54651378 8.403713337 269305296 narJ Stress Oxygen limitation Xylanimonas cellulosilytica DSM 15894 9.772893895 9.809743102 9.986394491 9.072035214 9.10983057 9.045404303 9.006584883 8.621544424 9.018499706 8.921937938 8.895463943 9.241905594 238787968 cda Carbon cycling Carbon degradation Starch Yersinia frederiksenii ATCC 33641 8.116009726 8.11612724 7.777556854 8.055522991 7.943560202 7.836768952 8.182789096 7.943532358 8.175055958 7.751825581 7.723911851 256582982 ppx Phosphorus Phosphorus utilization Cryptobacterium curtum DSM 15641 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Cryptobacterium;species:Cryptobacterium curtum; 7.966129392 7.856501613 7.451755209 7.445105573 8.149594576 7.136706569 7.974921164 7.87617717 7.747349943 161162883 glucoamylase Carbon cycling Carbon degradation Starch Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 8.86885369 8.58964274 8.340093049 8.639335784 8.231725025 7.757553949 8.189799943 8.254441927 8.558150494 8.322320639 8.326107639 8.110367055 240169491 amyA Carbon cycling Carbon degradation Starch Mycobacterium kansasii ATCC 12478 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 8.453472641 8.460357433 8.822940545 8.727674587 8.864404372 8.592141675 8.841984034 9.140992038 8.667794392 8.848646618 8.677625744 8.508353235 87200070 dnaK Stress Heat shock Novosphingobium aromaticivorans DSM 12444 8.179129696 8.090639631 8.171064357 8.268441771 8.149402824 8.058614036 7.838831887 8.272973203 8.303671766 8.079984606 7.999061256 7.920668768 194291980 iro virulence Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 8.325249439 8.260454194 8.028311904 8.246940536 8.043203932 7.99441088 8.31231301 7.980310727 8.40008279 7.72799806 7.785185627 7.788157894 44981744 AceB Carbon cycling Carbon degradation others Ashbya gossypii ATCC 10895 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Eremothecium;species:Eremothecium gossypii; 8.439059037 8.418119558 8.096173143 7.930209777 7.822065577 8.488584593 8.205849004 66964859 amyA Carbon cycling Carbon degradation Starch Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 9.352519645 8.726720421 9.162291845 9.539020319 9.21680154 8.72221525 9.331672213 9.420937238 8.90075877 9.606809054 9.659834084 9.260144764 133913193 HBH Organic Remediation Aromatics BTEX and related aromatics Saccharopolyspora erythraea NRRL 2338 9.148064779 9.087670677 9.045862603 9.008039181 8.830980163 8.672999264 8.984244847 8.963339725 8.847603838 8.998538338 8.810585998 8.827197582 167654708 ahpF Stress Oxygen stress Anaerostipes caccae DSM 14662 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Anaerostipes;species:Anaerostipes caccae; 9.132772883 9.247586135 9.228328205 8.728430801 8.969248661 8.961014067 9.319950231 9.220935301 9.215540054 9.704036191 9.451051351 9.517627763 147832086 nifH Nitrogen Nitrogen fixation Clavibacter michiganensis subsp. michiganensis NCPPB 382 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 8.569762934 8.593888268 8.70146639 7.48668895 7.940619344 8.354299323 8.287655296 7.78483772 8.165818396 8.126313414 8.011311079 8.124285057 119383925 benD Organic Remediation Aromatics Aromatic carboxylic acid Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.953865551 9.081185667 8.911288976 8.497555398 8.725734442 9.017764502 9.156616717 8.889099537 8.967654009 8.965591682 8.916611263 9.140401318 124039603 rd Organic Remediation Chlorinated solvents uncultured bacterium superkingdom:Bacteria; 9.348116265 9.503974845 9.592713618 8.712725312 8.663853779 8.678232502 8.568692706 8.274465592 8.564346282 8.488588402 8.387338375 8.819369744 121607723 bclA Organic Remediation Aromatics Aromatic carboxylic acid Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 8.072172796 7.978631988 7.956443572 7.990381298 8.172835606 7.72460789 8.039091695 8.337412313 7.658136884 7.833930649 7.590304669 72121507 vanA Carbon cycling Carbon degradation Others Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.885757234 8.87356974 8.96832369 8.967801608 9.164366915 8.956591127 8.767646377 9.327754141 8.575922504 9.074440537 9.138672778 9.194762669 148240266 amyA Carbon cycling Carbon degradation Starch Synechococcus sp. WH 7803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.724790421 7.973024225 8.342384935 8.730055933 8.1462576 7.91291443 8.226182481 8.181765075 8.458479942 8.502110626 7.862376823 224464425 phoB Stress Phosphate limitation Methylophaga thiooxidans DMS010 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Methylophaga;species:Methylophaga thiooxidans; 8.220307973 8.365365158 8.525419826 7.887981355 7.645629579 7.85522952 7.561020295 7.18680559 8.13248389 7.502791826 7.597898027 8.020495231 34104649 hly virulence hemolysin Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 8.37613542 8.275014882 7.756899157 8.096080677 7.498649049 7.885433816 7.917334452 7.860006246 7.915334858 8.212390534 89053717 ChrA Metal Resistance Chromium Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 8.152346918 8.084420117 8.01247973 7.829767868 7.304186629 7.559058876 7.955541436 7.86087957 8.037247852 8.069998489 8.0436475 94554937 hly virulence hemolysin Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 8.02672549 8.119109589 8.475908672 8.254953917 8.003096895 7.708906913 7.917595515 7.848201057 8.040580877 7.943314915 7.975474004 154684784 TerZ Metal Resistance Tellurium Bacillus amyloliquefaciens FZB42 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 8.103111751 8.090389101 8.164152505 8.190699118 8.177459053 8.106810225 8.257881047 8.174290385 160346615 proO Organic Remediation Aromatics Other aromatics Burkholderia multivorans ATCC 17616 8.629871713 8.389168387 8.43951628 7.994312224 7.720355725 7.950425477 8.384088588 7.887535195 8.358298965 7.979495584 8.050806718 7.82332772 183226000 ppx Phosphorus Phosphorus utilization Lactobacillus fermentum IFO 3956 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus fermentum; 8.656674852 8.824263911 9.027973884 8.597253295 8.470889164 8.353861113 8.177226317 8.437805055 8.159128508 8.303246252 8.274031949 8.642421595 154508447 narI Stress Oxygen limitation Actinomyces odontolyticus ATCC 17982 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces odontolyticus; 9.802103671 9.656460146 9.540771588 8.89412081 8.813047604 8.859242883 8.861002407 8.739582977 9.009347537 8.851475399 8.86593701 9.084295307 163259281 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 9.705638396 9.25791219 9.350020506 8.95711657 9.522050108 8.868462166 9.688789697 9.503265158 9.476165296 9.278274887 95111098 PobA Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas 8.633505054 8.595341098 8.685311352 8.626425473 8.502798747 8.563961207 8.670548066 9.013481897 8.901927732 8.712323244 8.721529559 8.746418865 110830914 ureC Nitrogen Ammonification Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 8.862171363 8.700264155 8.879738302 8.928391722 8.6816035 8.538642724 8.562383901 8.971358628 8.877739114 8.975124472 8.765941784 8.810592754 161622646 Host_recognition_T2_type Bacteria phage HOST RECOGNITION/STRUCTURAL Enterobacteria phage JS98 order:Caudovirales;family:Myoviridae;genus:T4-like viruses;species:Enterobacteria phage JS; 8.569845345 8.834120714 8.898533842 8.683086047 8.731456979 8.400843307 8.312782865 8.494058328 8.84389693 8.753741845 8.745209397 113935746 xylanase Carbon cycling Carbon degradation Hemicellulose Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.397489344 8.411449824 8.597499417 8.224828283 8.172492344 7.934240805 8.245858618 8.075778496 8.406491151 8.107847754 8.004066197 7.901716871 145223059 tfdA Organic Remediation Aromatics Chlorinated aromatics Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.166203781 8.081405461 8.466415551 7.420784064 7.540975635 7.724983206 8.053266741 7.211813732 7.491338414 7.236601458 7.505406532 113872224 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 8.560135504 8.482005808 8.484690625 8.29961992 8.152214904 8.049081173 8.220949767 8.238460648 8.218330739 8.20992328 8.194261138 7.916719342 1395175 bphC Organic Remediation Aromatics Polycyclic aromatics Pseudomonas sp. DJ-12 superkingdom:Bacteria;phylum:Proteobacteria; 8.205472664 8.468108422 8.057646881 7.894625322 7.909385861 7.685555646 8.068900246 8.266169214 8.062956846 8.205714845 8.150228499 110819001 CDH Carbon cycling Carbon degradation Cellulose Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 9.626801696 9.959432617 9.379486813 9.283421182 9.765709914 10.09362996 10.32364627 9.88734504 9.794164067 9.735666278 9.995483432 9.853047724 226365446 sigma_24 Stress Sigma factors Rhodococcus opacus B4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 9.778939545 9.979849669 9.745812397 8.644426043 9.086030984 8.679238002 9.215646554 9.187718239 8.99200606 9.605200005 9.277156805 9.360289593 151574 pheA Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 8.506622953 8.140784514 7.996081283 7.775689062 7.543830929 7.357868384 7.35964819 258533374 iro virulence Pantoea sp. At-9b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 9.449214459 9.234547396 9.15472004 9.460947866 9.321935333 9.183635109 9.676313201 9.599370744 9.02083489 9.528067285 9.228541671 9.398076623 187728543 xylG Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 9.740521685 9.926055025 9.964023763 9.064109528 9.058861357 8.951064251 8.951070156 8.656663116 8.77449871 8.961584302 9.042633054 9.256083238 126575022 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Algoriphagus sp. PR1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cyclobacteriaceae;genus:Algoriphagus; 8.388361384 8.245565438 7.924150527 7.707719594 7.730537629 7.183242331 7.226474585 7.366764893 7.301833023 7.641628879 165977352 dnaK Stress Heat shock Actinobacillus pleuropneumoniae serovar 3 str. JL03 8.060185138 8.292978263 7.964975661 7.511137654 8.220428058 7.97676281 8.105757229 8.012181668 8.173850131 51891983 sigma_24 Stress Sigma factors Symbiobacterium thermophilum IAM 14863 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVIII. Incertae Sedis;genus:Symbiobacterium;species:Symbiobacterium thermophilum; 8.257403405 8.198815112 8.447999158 7.608211277 7.707830921 7.616041269 7.542686655 7.301020588 8.043722103 7.378895215 7.415470306 7.857172217 222087502 Arylest Organic Remediation Aromatics Other aromatics Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.560082579 8.470582051 8.597788678 8.247069485 8.483563429 8.418669113 8.327650443 8.485350009 8.119297655 8.415154686 8.336793474 8.302174841 221156048 pstB Stress Phosphate limitation Thermomicrobium roseum DSM 5159 9.449133618 9.940273304 9.831328193 9.554995182 9.80572029 9.766305417 9.988772169 10.2676668 9.811393052 10.60053703 10.35854284 10.18920811 126665328 bphA Organic Remediation Aromatics Polycyclic aromatics Marinobacter sp. ELB17 9.0507777 8.928381811 8.471514506 8.230338952 7.712454601 8.011692544 8.447500088 8.464607548 8.098571744 7.749466023 8.344109362 8.019801 601878 bglH Stress Glucose limitation Bacillus circulans superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 9.017567196 8.77169342 8.842430472 8.47167013 8.183284449 8.870217939 8.832151616 8.369413699 9.341759701 8.52797878 8.588372095 8.772598841 86159385 cytochrome Energy process Energy process Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 9.295102807 9.146487032 9.215369981 8.614875593 9.031639807 9.215968958 9.492111468 8.414962574 9.263226071 8.9242515 8.986654834 8.887978115 237903796 endochitinase Carbon cycling Carbon degradation Chitin Uncinocarpus reesii 1704 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 9.409720044 9.33659218 9.065586838 9.235626939 9.103180117 8.98214317 9.397621648 9.609710395 9.463412239 9.406876134 9.443189186 9.608762134 83316596 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.947307621 7.661748103 7.759492478 8.145210452 7.772453884 7.852641726 7.666573951 7.699599832 146405349 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 10.1587133 9.779125274 9.959318872 9.627486355 9.758696013 9.479206727 9.603782926 9.956814457 9.687431802 9.82862305 9.81567494 9.770620872 146303840 ABC_transporter_I Bioleaching other category Metallosphaera sedula DSM 5348 8.234895018 8.088100399 8.338851491 7.500186327 7.347969733 7.615675698 7.032974654 7.032353708 7.633082664 7.404290763 7.199640984 7.519468008 258558311 pstC Stress Phosphate limitation Nakamurella multipartita DSM 44233 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 8.733083087 8.608332826 8.772304015 8.45531277 8.240913538 8.252915851 8.30593933 8.334665427 8.527609738 8.355805619 8.216452838 8.507969567 85373461 amyA Carbon cycling Carbon degradation Starch Erythrobacter litoralis HTCC2594 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 8.549176454 8.265655075 8.671625737 7.98869086 7.781081565 7.941042307 7.936424911 7.334744603 7.365718662 7.984298951 171912759 TerC Metal Resistance Tellurium Verrucomicrobium spinosum DSM 4136 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Verrucomicrobium;species:Verrucomicrobium spinosum; 8.451564846 8.295689285 8.354887618 7.669125377 8.08284706 8.216726765 8.090141989 7.86026846 8.08870794 89901567 narI Stress Oxygen limitation Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 8.93973065 8.561252708 8.441530911 8.174290972 8.420576537 8.748323997 8.286721361 8.83612328 8.332223522 8.246391481 8.353929286 56379910 AceB Carbon cycling Carbon degradation others Geobacillus kaustophilus HTA426 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus kaustophilus; 8.873821062 8.679769946 9.240932644 8.342445931 8.254335597 8.289763796 8.219294323 7.989518168 8.471243392 8.218332929 8.309705608 8.489489437 111223515 camDCAB Carbon cycling Carbon degradation Others Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 8.822258879 8.486753575 8.683396642 8.739112394 8.558894518 8.173612108 8.531733929 8.46322134 8.573129513 8.302889102 8.471272948 8.021376353 93357655 Catechol Organic Remediation Aromatics Other aromatics Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.969000163 8.911065845 9.089724773 8.544812494 8.392735917 8.46595928 9.085978013 8.662204415 9.296589718 8.545492615 8.617081661 8.402676953 218134574 Tet Antibiotic resistance other Bacteroides pectinophilus ATCC 43243 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides pectinophilus; 8.624595422 8.545811119 8.93202361 8.400199489 8.355248769 8.076517903 8.135148965 7.889012109 8.060091132 8.102259672 7.934502778 8.385555111 162452226 glnA Stress Nitrogen limitation Sorangium cellulosum 'So ce 56' 9.703196007 9.945639905 9.832187894 8.826137508 9.09927978 9.343560551 9.797460246 9.046625278 9.539385268 9.060786346 9.369946283 9.598937502 115257183 xylanase Carbon cycling Carbon degradation Hemicellulose Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 9.502578268 9.524780466 9.327177893 8.697239184 8.694869506 8.671621788 9.086607773 8.641341648 9.084402691 8.7875643 8.901520419 8.771257118 170778335 phdCI Organic Remediation Aromatics Polycyclic aromatics Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 8.569343355 8.7024111 8.754199053 8.095695871 8.029421587 8.47046659 8.909256944 8.186773691 8.890546218 8.408583491 8.600789246 8.612393696 92111140 dsrB Sulphur sulfite reductase Desulfomicrobium thermophilum superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfomicrobiaceae;genus:Desulfomicrobium; 9.325786185 9.657443587 9.115726958 9.506318649 9.800972646 10.3798894 10.24860757 9.822739007 9.641566574 9.590260335 9.635479994 9.409793765 219994298 pstA Stress Phosphate limitation Halothermothrix orenii H 168 6.950035658 6.873532868 7.142322166 6.902557892 6.666187654 7.022624617 209504156 MFS_antibiotic Antibiotic resistance transporter Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 9.437270464 9.302957406 9.439815926 9.072204194 8.957774456 8.885556672 9.099738936 8.979280199 8.806380611 9.095994077 8.865902467 9.135612086 85672142 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.218585311 8.087103704 8.179367562 8.09836826 7.720357269 7.594886695 8.028080792 7.855945736 8.106477323 7.775969985 7.87439706 7.597536068 259023137 pstC Stress Phosphate limitation Rhodobacter sp. SW2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 9.511886799 9.002779704 9.073156947 9.226526243 8.884798676 8.539359572 9.212594893 9.315890973 8.954110217 9.102427785 8.965694 8.590088065 83816370 clpC Stress Protein stress Salinibacter ruber DSM 13855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 8.45532226 8.259510436 8.524245034 8.206614916 7.862129617 7.83170921 7.704370976 8.198813429 8.023868037 7.839739564 8.039542605 110601914 pcc Carbon cycling Carbon fixation Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.320127986 8.477108819 8.591597311 7.96706321 8.102519483 8.053680107 7.874644048 7.842368807 8.31249178 7.756815922 7.897886233 7.987496107 21219562 ZntA Metal Resistance Zinc Streptomyces coelicolor A3(2) 9.815231151 9.399643829 9.210090639 9.905451937 9.704595073 9.457701848 9.809758115 9.752641266 9.607913894 9.409590727 9.573016525 9.303107365 73540846 fnr Stress Oxygen stress Ralstonia eutropha JMP134 9.002518839 9.117763251 8.967161856 9.377762845 9.306035076 9.221352718 9.179415832 9.560305414 8.830824391 9.338051962 9.370103723 8.739807542 220711207 iro virulence Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.994399469 9.278578046 9.313911792 9.625548932 9.671309224 9.372710947 9.439527917 9.585136071 9.26953333 9.459408628 9.289676213 8.85395701 110551394 gyrB other category gyrB Methanoculleus marisnigri JR1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanoculleus;species:Methanoculleus marisnigri; 8.523994001 8.097324621 8.413100811 8.56712584 8.462287251 8.208609126 8.164597971 8.672799421 8.375909174 8.584251636 8.346310892 8.353814092 171057591 fnr Stress Oxygen stress Leptothrix cholodnii SP-6 8.960982885 8.996235057 9.046470185 9.000049611 8.914763058 8.655869501 8.84631853 8.954517488 8.907166527 8.894553655 8.843059835 8.846570929 84496858 hrcA Stress Heat shock Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 8.205634352 8.149059135 8.328523638 8.157175617 8.007374081 7.915524174 8.16923441 8.307873265 8.158391204 8.014884513 7.924643293 119897709 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 9.258294915 8.775541485 8.831857119 9.490388425 9.348049351 9.249474212 9.365420983 9.222958557 9.236024851 9.200977978 9.177241699 8.929478729 209401784 narG Nitrogen Denitrification uncultured bacterium 8.594365953 8.234551862 8.612100302 8.511531556 8.519505623 8.42159935 8.104142303 8.484364464 8.179055177 8.331718793 8.220777227 8.719602317 150958043 xylA Carbon cycling Carbon degradation Hemicellulose Klebsiella pneumoniae subsp. pneumoniae MGH 78578 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 8.105542239 8.095779021 7.898024378 8.076504952 7.684553667 7.474249698 7.981524555 7.725671253 7.866063373 7.80501084 196166714 BchY other category chlorophyllide reductase Chlorobium sp. enrichment culture clone D12 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium; 8.350377259 8.113215758 8.230983854 7.908772333 7.822070738 7.873417331 8.040553377 8.012414055 8.005058139 7.920670648 8.011162037 219858713 atzC Organic Remediation Herbicides related compound Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 8.892181177 8.77524923 8.70849485 8.399301871 8.146179506 8.393523066 8.454957451 8.347561934 8.582770761 8.618509145 8.747355818 8.668137376 148256352 B_lactamase Antibiotic resistance Beta-lactamases Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 9.25837394 9.235420851 9.066892197 8.971164405 8.751266879 8.807338772 9.493744877 8.942519277 9.46903702 9.317903078 8.993748242 37519772 sigma_70 Stress Sigma factors Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 9.504859882 9.425191447 9.427546612 9.062442437 8.791679131 8.897971998 8.555254665 8.478208161 8.676233097 8.712854382 8.844870267 8.97009824 146400731 gyrB other category gyrB Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 8.738280364 8.73594073 8.477849726 8.640870557 8.560010664 8.505726437 8.534033795 8.853320622 8.627895092 145305192 nitA Organic Remediation Aromatics Other aromatics Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 9.619646372 9.749774597 9.346322672 9.68900371 9.746493743 9.559587811 10.0476758 9.759132464 9.875999047 9.508653125 9.596913763 9.772435368 126727625 pcaG Organic Remediation Aromatics Other aromatics Rhodobacterales bacterium HTCC2150 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 9.175964342 8.796184565 8.964807772 8.448563243 8.314819891 8.30135599 8.099376477 7.624320066 8.038967665 8.219939798 8.429367213 16082111 heat_shock_protein Bioleaching other category "Thermoplasma acidophilum DSM 1728,Thermoplasma acidophilum" 8.331780941 8.066904927 7.453218914 7.468824562 7.54461051 7.93634744 7.279460021 7.363121827 7.522159316 7.588606654 92438092 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium sp. KMS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 10.27502644 9.676893015 9.86878662 9.53492502 9.565399428 9.426227441 9.44110865 9.577951238 9.158848312 9.611589608 9.594333531 9.550348819 229748081 fnr Stress Oxygen stress Stackebrandtia nassauensis DSM 44728 8.386518526 8.384827755 8.404596972 7.817655294 7.667135253 7.80252729 8.167389897 7.358306321 7.745456274 7.969421776 7.676622453 119673183 pstC Stress Phosphate limitation Pyrobaculum islandicum DSM 4184 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum islandicum; 7.972751016 7.661122855 7.949607813 8.156682878 7.667709332 7.991793178 7.521780045 8.282752265 116222550 pcaG Organic Remediation Aromatics Other aromatics Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 8.701516093 8.477502568 8.662857303 8.771981956 8.664575978 8.393576285 8.409353486 8.538401701 8.731731706 8.310506699 8.316677893 7.843655642 256787581 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Streptomyces lividans TK24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces lividans; 8.500315335 8.67708733 8.651049947 8.563175527 8.621745109 8.589987968 8.47734186 9.05418873 8.646751733 8.981573348 8.993795841 9.022241807 194309871 sigma_70 Stress Sigma factors Pelodictyon phaeoclathratiforme BU-1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 8.463928142 8.104924878 8.433587598 7.318652957 7.138313152 7.358231078 7.220079101 7.682839409 7.212181071 7.219608349 7.479384475 280957596 sigma_24 Stress Sigma factors Desulfovibrio aespoeensis Aspo-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio aespoeensis; 8.779922235 8.688099565 8.530064464 8.121768528 8.117186637 8.530595346 8.507112188 8.390884202 8.524995148 8.393650603 8.217915721 8.333448708 162568595 aoxB Metal Resistance Arsenic uncultured bacterium superkingdom:Bacteria; 8.834704887 8.879847041 8.586222378 8.822982191 8.984459023 8.940528296 9.039477606 9.372132007 8.94470287 9.550147753 9.116791507 9.002108042 148556163 tfdA Organic Remediation Aromatics Chlorinated aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.814430058 8.707076855 8.596631191 8.217504049 8.272473503 8.645346634 8.970379643 8.435642621 8.930327858 8.43594507 8.37047602 8.38134465 144947590 ChrA Metal Resistance Chromium Petrotoga mobilis SJ95 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Petrotoga;species:Petrotoga mobilis; 7.299562629 7.473199062 7.731020524 7.72876659 85112953 tfdA Organic Remediation Aromatics Chlorinated aromatics Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 8.419851194 8.491804691 8.025560719 8.125587464 8.360919758 8.24673756 8.02627977 8.050363954 7.896644164 7.910121546 8.042731909 167949875 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Endoriftia persephone 'Hot96_1+Hot96_2' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Endoriftia;species:Endoriftia persephone; 8.883181539 9.118296781 8.873088502 9.081668329 9.040077814 8.951665755 9.100210886 8.830563553 8.88673672 9.003988106 3157684 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 9.088813419 9.234659505 9.233899226 8.666264983 8.71893396 8.485417341 8.845109159 8.654213725 8.978228561 8.604298161 8.508373577 8.668207394 54017959 SMR_antibiotics Antibiotic resistance transporter Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 7.98387618 8.113034806 8.189584734 8.099262213 8.334775437 8.564668241 8.398859354 8.516678049 8.509817906 8.201649794 8.110427719 8.161038695 240169695 sigma_70 Stress Sigma factors Mycobacterium kansasii ATCC 12478 10.45063792 10.40985581 10.73875487 10.48548576 10.305283 10.04373982 10.16176244 10.52430237 10.20892135 10.54346434 10.42107728 10.74118269 83318854 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.493676699 8.21987441 8.11073354 8.304195514 8.063411923 8.03179709 8.504258792 8.35958718 8.143320407 8.217218324 257062837 ahpC Stress Oxygen stress Slackia heliotrinireducens DSM 20476 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Slackia;species:Slackia heliotrinireducens; 8.235062556 7.995906449 8.266592606 8.197278293 8.080588043 7.827432548 8.041981136 8.1293623 8.289579244 7.985896402 7.722972952 7.76575028 251771877 glnA Stress Nitrogen limitation Leptospirillum ferrodiazotrophum 9.339525027 9.309996892 9.427931588 8.643988152 8.503933349 8.414866271 8.565909759 8.340974754 8.4715541 8.459934427 8.431696063 8.817226808 86162130 ahpC Stress Oxygen stress Marinomonas sp. MED121 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 8.443102283 8.032792667 8.511321811 7.258563044 7.301514569 7.43705245 7.398151662 7.142002866 7.495585162 39996201 pstS Stress Phosphate limitation Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 8.244927929 7.995155093 7.652295064 7.627726164 7.697772501 7.467162375 7.837996037 7.744192393 7.593608992 7.857933427 241771569 Tet Antibiotic resistance other Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 8.611906613 8.525735661 8.423355906 8.495952537 8.339619523 8.250392231 8.733691195 8.527013402 8.762944867 8.667978884 8.131080023 126666996 pilin virulence pilin Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 9.405815267 9.655908554 9.374815895 9.065000005 9.367416114 8.761300489 239940961 sigma_70 Stress Sigma factors Streptomyces roseosporus NRRL 15998 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces filamentosus; 8.785317182 9.007280541 9.059327094 9.046869815 9.04427361 9.318090161 9.079723327 9.574923951 8.891122216 9.547134671 9.680955044 9.077204815 99030465 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 8.654626217 8.588674486 8.627525851 8.102830767 7.974541632 8.263601484 8.764525848 8.059725588 8.571424201 8.178612631 8.006961556 8.227837136 118470090 exaA Organic Remediation Chlorinated solvents Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 9.292909752 9.28682079 9.246036142 8.823104666 8.662643639 8.709304857 8.585838649 8.535224519 8.63506496 8.73103419 8.818432638 9.00985386 78192774 nrfA Nitrogen Dissimilatory N reduction Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 8.468224221 8.398904446 8.257521833 8.132366169 8.34910009 8.332978223 8.158948727 8.605976851 8.39401183 8.419266813 8.544252616 152968278 clpC Stress Protein stress Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 8.079403754 8.074476081 8.568590761 7.795561098 7.867801447 7.695316075 7.725341773 7.734072268 7.926836861 7.79453832 7.492904406 7.696401339 150964700 glnA Stress Nitrogen limitation Pseudomonas aeruginosa PA7 8.589353976 8.675098764 8.798658962 8.259675977 8.141355681 8.364918255 8.590874781 8.336430175 8.791030227 8.108213707 8.140119957 8.197259027 58198981 fnr Stress Oxygen stress Rubrivivax gelatinosus 8.379236439 8.092823892 7.930756309 8.096775589 8.019996138 172063143 fnr Stress Oxygen stress Burkholderia ambifaria MC40-6 8.12617044 8.127115713 8.360089469 7.529964581 7.840769556 7.670761239 7.462335081 7.659890675 7.729891791 7.862618776 8.25464855 7.927741692 187715395 ChrA Metal Resistance Chromium Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8.183790894 7.890719854 7.910913362 7.86891787 7.559637726 7.665190415 7.904925364 7.918091441 7.905772247 7.866362051 7.730032946 84689769 nitA Organic Remediation Aromatics Other aromatics Parvularcula bermudensis HTCC2503 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 8.725438163 8.234529441 8.440977386 8.307411385 8.240372883 8.363452956 7.971242481 8.299659465 8.469714634 8.111404533 8.175995372 8.299407345 171322946 sigma_70 Stress Sigma factors Burkholderia ambifaria MEX-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 8.126287172 7.859975334 7.620433735 7.792638706 7.066516111 7.431134348 7.72556265 7.69317236 7.610622793 7.313105986 133911956 nmoA Organic Remediation Aromatics Nitoaromatics Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 8.373012159 8.2304876 8.308886221 8.28976097 8.238851537 7.840365163 8.056633154 8.28211471 8.309519629 7.970298698 7.814794981 7.870966965 67535763 pulA Carbon cycling Carbon degradation Starch Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 9.55924938 9.501351967 9.571092048 9.546157714 9.438241636 9.132768945 9.409092177 9.581078542 9.551406822 9.302073731 9.118337061 9.269622371 6166382 integrase_tyrosine Bacteria phage REPLICATION Pseudomonas phage D3 order:Caudovirales;family:Siphoviridae; 8.800836092 8.883357553 8.856360492 8.501301678 8.411874043 8.490627595 8.793135499 9.204438716 8.693528931 9.073955888 8.89202349 9.057740031 260633275 glnA Stress Nitrogen limitation Prevotella sp. oral taxon 472 str. F0295 8.502448981 8.169173466 8.523437859 7.734769409 7.747086038 7.797868426 7.668770388 7.327957142 8.306746451 7.707448784 7.421981687 7.632453418 124294947 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 9.449341925 9.613451344 9.847945165 8.759522555 8.691085939 8.596657185 8.429559741 8.279868867 8.511335993 8.581587474 8.553484582 8.842038355 21106432 HBH Organic Remediation Aromatics BTEX and related aromatics Xanthomonas axonopodis pv. citri str. 306 10.07591049 9.932123866 9.834729425 9.13606226 9.471383312 9.985878895 9.250154091 9.791729592 9.493347209 9.659891578 9.410249868 84391488 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 9.058131946 8.797808768 8.800369546 8.325126815 8.255662617 8.158962825 8.941970246 8.146501108 8.930731292 8.297803998 8.165390647 8.247613176 169831574 pstB Stress Phosphate limitation Candidatus Desulforudis audaxviator MP104C 8.386914353 8.635428764 8.689178459 8.109096147 7.901944885 8.134799128 8.34270029 8.148731119 8.258761057 7.89403915 7.854716044 8.028951371 153010557 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 7.99055619 8.461136665 8.319266374 7.590598866 7.861495374 7.862095987 7.889691606 7.937344574 7.59164313 7.752557252 7.710708737 89088964 sigma_24 Stress Sigma factors Bacillus sp. NRRL B-14911 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 8.257024498 8.357937199 8.251858258 8.189355862 8.477205978 8.252302179 8.008971078 8.890744617 8.186158982 8.729572708 8.682998169 8.395003907 114225808 pilin virulence pilin Alkalilimnicola ehrlichii MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 8.628601144 8.668191742 8.606947838 8.101495927 8.004009366 8.083503277 7.496288703 7.690148556 7.943540248 7.79329568 8.036010634 8.275082207 17385544 narG Nitrogen Denitrification uncultured bacterium 8.797053492 8.373838496 8.70828361 8.353825 7.927084225 7.94035934 7.668761958 7.733197974 8.52264251 8.000667553 7.650324009 7.970044352 162453147 glx Carbon cycling Carbon degradation Lignin Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 8.793244534 8.494116734 8.399134843 8.242314316 8.428528874 8.399025352 8.350171002 8.623542747 8.513007291 8.166866552 8.30565002 8.204936874 186461326 Arylest Organic Remediation Aromatics Other aromatics Klebsiella sp. ZD414 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella; 9.184362141 9.091543492 8.912653616 9.683971 9.446332896 8.789700002 9.522162121 9.414110713 9.244311399 9.244488985 9.035736861 9.008603077 115375557 endochitinase Carbon cycling Carbon degradation Chitin Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 8.448224758 9.05349958 9.064890608 9.205744884 9.173312827 9.202951755 8.849317441 9.311971677 8.859445785 9.283007436 9.252752795 8.788495607 219996066 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 8.412110645 8.280712204 8.235559682 8.008743309 8.16774962 8.061885824 8.438556791 8.25479232 8.249889075 7.77434349 8.298530919 8.219470678 38373179 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.747598064 8.351945275 8.346953048 8.707391515 8.721374432 8.537972125 8.719978674 8.584367647 8.366826037 8.509847926 8.433918755 8.343315814 149808847 iro virulence Moritella sp. PE36 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Moritellaceae;genus:Moritella; 8.657429996 8.535986228 8.525272522 8.111916933 8.120513891 8.034125762 7.855117458 7.967777796 8.327006261 8.582375246 8.375343223 193201370 lysin Bacteria phage LYSIS Klebsiella phage K11 order:Caudovirales;family:Podoviridae;genus:T7-like viruses; 9.472054009 9.507178524 9.654486829 9.006406128 8.742605142 8.671708632 8.536719913 8.590017141 8.568731835 8.721423124 8.911514058 260428358 glnA Stress Nitrogen limitation Citreicella sp. SE45 10.5030915 10.86269058 11.0080885 9.900439211 10.05233594 9.915152002 9.543930473 9.473893074 9.97124838 9.782056041 10.04466255 10.02107056 189192679 BpH Organic Remediation Aromatics Aromatic carboxylic acid Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 8.934839056 9.115169404 8.928470448 8.30547983 8.077987083 8.34074444 8.070876058 7.843635444 8.367053968 8.190840065 8.14436449 8.450979635 170140550 MFS_antibiotic Antibiotic resistance transporter Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 9.793322871 9.713377813 9.838618781 9.088343809 9.01643069 8.995281768 9.20822343 8.700902318 9.317559017 9.05874617 9.39632527 9.205395219 27530799 gyrB other category gyrB Gordonia polyisoprenivorans superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 8.505417319 8.161247587 8.449357528 8.34848722 8.109159697 8.270407112 8.674459488 8.550980198 8.245521729 8.020732797 8.360733539 643615 CopA Metal Resistance Copper superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 8.23702881 7.922814762 212527148 glnA Stress Nitrogen limitation Penicillium marneffei ATCC 18224 8.986633426 8.79337942 8.896655987 8.558591578 8.548099377 8.491718359 8.52194923 8.449340571 8.813972872 8.69436192 8.796615693 8.627666399 110669570 P450 Energy process Energy process Haloquadratum walsbyi DSM 16790 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloquadratum;species:Haloquadratum walsbyi; 8.114227484 7.904292984 8.347265958 7.648724365 7.641847127 7.669775131 7.270350994 7.461664755 7.949394324 7.583941479 7.276116319 7.738933143 170140350 atzC Organic Remediation Herbicides related compound Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 9.159440321 9.071360158 9.25304431 9.147144479 9.079187144 8.676101698 8.927672114 9.305485145 9.103257025 9.131334517 9.232917702 9.362559142 38637905 norB Nitrogen Denitrification Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.419015339 8.704439683 8.209514619 8.25090961 8.001093411 8.034209398 8.328569401 8.10009365 8.081768764 8.124450128 8.194987485 256679037 proV Stress Osmotic stress Streptomyces sp. SPB78 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.990560862 9.049797638 8.971931997 9.387124089 9.350208132 9.325215528 9.785589842 9.347868988 9.681601994 9.309666971 9.521589215 152970595 ChrA Metal Resistance Chromium Klebsiella pneumoniae subsp. pneumoniae MGH 78578 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 8.498370196 8.19353398 8.511222238 8.040674869 7.719918978 7.651360802 7.531583864 7.68286836 8.068307963 7.683966123 7.918749561 124259832 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 8.181584521 8.357422075 8.157563211 8.175499286 8.103404552 8.41151865 8.486584107 8.23294837 8.35088622 8.067263466 8.211374748 8.016643436 154156163 bphA Organic Remediation Aromatics Polycyclic aromatics Parvibaculum lavamentivorans DS-1 9.52647073 9.5002366 8.664587748 8.230208948 8.504827694 8.519924915 8.209202133 8.501936124 8.273470097 8.291638726 8.889114858 91686595 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.494775405 8.337348543 8.584518223 8.246472088 8.265343908 8.417360523 8.565993387 8.47673399 8.402155067 8.172313337 219965760 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 10.28290331 9.50602045 9.511870292 10.30892914 10.06615189 9.805622101 10.16481082 9.962630715 10.04240753 10.01277444 9.88965089 9.662539716 149817955 pchCF Organic Remediation Aromatics BTEX and related aromatics Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 9.840271798 9.716732696 9.726785567 9.665760957 9.876125595 9.870891212 10.23622905 9.946794483 10.39540195 10.33565416 10.22886967 146339207 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 9.576902573 9.676691715 9.634821453 9.008281749 9.240209303 9.388253747 9.726156205 8.85089585 9.506680962 9.407071886 9.235535895 9.567244829 71163424 linB Organic Remediation Pesticides related compound Xylella fastidiosa Dixon superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xylella;species:Xylella fastidiosa; 8.876715856 8.769385847 8.774248422 7.932993361 7.667215837 8.160276201 8.143381699 8.065430768 8.306668247 62424588 AceA Carbon cycling Carbon degradation others Brevibacterium linens BL2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium linens; 8.559204761 8.939620453 8.871228794 8.988947517 8.884229808 8.753044882 9.176661983 8.858006288 8.771984034 8.793439424 8.681255578 8.551995277 48697551 endolysin_transglycosylase Bacteria phage LYSIS Burkholderia phage BcepB1A order:Caudovirales;family:Myoviridae; 8.334656495 8.477340853 7.816719938 8.082770213 8.004489895 7.809453453 8.036407225 7.871266087 8.083479934 8.171414221 145702897 NADH_quinone_oxidoreductase Bioleaching Electron transport Metallosphaera sedula DSM 5348 8.295904306 8.043993222 8.064792503 7.35797455 8.11955007 7.352341964 7.559156066 7.668162303 8.016064255 66766792 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Xanthomonas campestris pv. campestris str. 8004 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 9.169759202 9.341546546 9.318438565 8.986084878 9.044528599 9.013091317 8.839379253 9.237148711 9.109310819 8.938885132 9.292812216 56542755 silC Metal Resistance Silver Zymomonas mobilis subsp. mobilis ZM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Zymomonas;species:Zymomonas mobilis; 9.704622658 9.144861635 8.771623048 9.480735054 10.00089441 9.629812527 9.957812677 9.206406428 9.798795539 9.507141572 197627061 ArsC Metal Resistance Arsenic Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 8.059800389 7.966606313 8.033308318 7.686170642 7.652690084 8.082692808 8.044796759 7.806367163 11078707 gyrB other category gyrB Pseudomonas alcaligenes superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.535339518 8.412343137 8.583987121 8.123923293 7.997006495 8.358488058 8.398479103 8.173102544 8.326293587 8.027520027 8.285239497 8.5578757 145322744 catB Organic Remediation Aromatics BTEX and related aromatics Novosphingobium aromaticivorans DSM 12444 9.686526266 9.820177581 9.538644088 9.647914492 10.00232163 10.02031433 10.2782636 9.995983906 9.934901428 10.08430537 10.22765087 10.282587 109643346 bco Organic Remediation Aromatics Aromatic carboxylic acid Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 9.478891991 9.636247798 9.386587431 8.780167155 8.730511977 8.799475927 8.937811344 8.736532931 9.068776669 9.129737424 9.39298112 118698588 THL Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia ambifaria MC40-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 8.638210151 8.959038571 8.885262872 8.21081404 8.429282792 8.866548895 8.832375679 8.475287946 8.728808376 8.889600595 8.904244112 9.078754042 86280314 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.68726774 7.796368796 7.651879346 7.682647241 7.866653818 7.833286531 7.982200792 7.857078513 7.969985879 84043079 pcaG Organic Remediation Aromatics Other aromatics uncultured bacterium 8.366557121 8.430191376 8.082769663 7.892664188 7.553566206 7.898063326 7.971674232 8.096748278 8.664337146 8.007188678 8.11101913 8.027654971 167644597 fnr Stress Oxygen stress Caulobacter sp. K31 9.941311354 9.800229226 9.662525747 9.355277092 7.700965145 9.344112152 9.736644006 9.077162298 9.613191774 9.476885652 9.624739719 9.428086374 163854774 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 8.275794375 8.284522298 7.934262769 8.035329691 7.925473075 7.82469828 8.477887643 8.295441076 8.360278774 8.370630625 7.941801628 211906001 mcrA Carbon cycling Methane Methane production uncultured archaeon superkingdom:Archaea; 8.376917035 8.126027292 7.474156278 7.599257967 7.479320736 7.663915123 7.279982828 8.170293084 7.590439938 7.333250408 7.464813069 158445654 pstS Stress Phosphate limitation Faecalibacterium prausnitzii M21/2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Faecalibacterium;species:Faecalibacterium prausnitzii; 9.211875828 9.488378985 9.428883435 9.35010875 9.606714759 9.609562492 9.723631975 9.311989897 10.00225524 9.602237442 9.697608434 9.627505608 94310833 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.64096261 8.728089338 8.665321659 8.500223048 8.360303672 8.084483372 8.187785803 8.270985417 8.383510101 7.98689779 8.402329472 212528430 ABC_antibiotic_transporter Antibiotic resistance transporter Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 8.521756521 8.084815816 8.543251682 7.975557365 7.826386745 7.551746114 7.554240105 8.086027828 7.84697926 7.910665869 7.83725667 8.062003203 68348048 nmoA Organic Remediation Aromatics Nitoaromatics Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 9.124285685 7.903219846 8.430775577 7.681555983 7.823466374 8.348399962 8.304816926 8.472855547 8.116774766 8.200236612 7.633677432 85091600 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 10.58798239 10.68368957 10.46132697 10.23326298 10.26683776 10.49060316 10.9127141 10.64537891 10.55371627 10.4020895 10.45931136 10.76672603 40744701 tfdA Organic Remediation Aromatics Chlorinated aromatics Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 8.01910198 7.967119888 7.942521136 7.687942592 7.438782993 7.330640743 7.901827991 7.703869528 7.574902976 7.143049864 7.566598094 151359447 ara Carbon cycling Carbon degradation Hemicellulose Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 10.35036009 9.938581854 10.05097961 9.657778212 9.458989427 9.28492798 9.742908682 9.971757976 9.578029924 9.844367513 9.717573201 10.05373307 226090964 pstA Stress Phosphate limitation Gemmatimonas aurantiaca T-27 9.602380759 9.36528288 9.627692249 8.840543135 8.597765776 8.743736231 8.517320564 8.53761783 8.520112506 8.761553576 8.722849905 9.054548139 257449050 phoB Stress Phosphate limitation Enhydrobacter aerosaccus SK60 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Enhydrobacter;species:Enhydrobacter aerosaccus; 8.886668887 9.087949431 9.188508746 8.513651482 8.426045153 8.407662854 8.486396003 8.464686633 8.275983643 8.677317408 8.673842852 8.621578346 120594005 pimF Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8.32313307 8.207076563 8.149290721 7.430056368 7.458332779 7.485060913 7.155963285 7.176430878 7.842508746 7.794474519 7.579886407 8.012223582 6468706 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.156715523 8.233237809 7.978070204 7.918690431 7.885495128 7.743961677 7.578160463 8.200315836 8.317168356 7.902966358 7.87837573 8.128408989 214044514 AceB Carbon cycling Carbon degradation others Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.701286232 9.138925085 8.856419266 8.130329355 8.499982131 8.667292534 8.926546489 8.035357549 9.400101028 8.277594669 8.225543813 8.446143187 145245794 BADH Organic Remediation Aromatics Other aromatics Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8.9777959 9.145442189 9.231668885 8.35398296 8.389483369 8.537911897 8.735718226 8.308062197 8.618106212 8.412570542 8.46711716 8.78423639 281484894 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.935710513 7.830795516 8.070298445 7.271692935 7.477059777 7.287604731 7.097685143 6.881670504 7.115452467 7.582080497 110821443 nmoA Organic Remediation Aromatics Nitoaromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.562069931 8.505611224 8.315831755 8.276266558 8.1596421 8.056540136 8.274856453 8.54619577 8.68917165 8.252727772 8.038024887 8.316900832 166343785 amoA Nitrogen Nitrification superkingdom:Bacteria; 8.00341428 7.758732495 7.486921691 7.052788126 7.140297164 160879809 pstB Stress Phosphate limitation Clostridium phytofermentans ISDg 8.734824897 8.348863846 7.710980974 7.711203939 7.981479948 7.50137225 7.577741601 7.449787468 7.989002009 8.00158716 77384004 atzC Organic Remediation Herbicides related compound Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.723480814 8.237599271 8.019001242 9.021580361 9.00172474 8.968694085 9.042529472 8.799767811 8.588419142 8.755219933 8.812840334 8.592793622 259041581 ABC_antibiotic_transporter Antibiotic resistance transporter Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 8.993272005 8.856261308 9.078046478 8.384971077 8.443742086 8.580560556 8.321986814 7.955962969 8.526656273 8.432353816 8.564978707 8.560612028 157919989 narI Stress Oxygen limitation Caldivirga maquilingensis IC-167 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Caldivirga;species:Caldivirga maquilingensis; 9.855386771 9.899856202 9.795125325 9.159862986 8.710513533 9.037004733 9.309231857 9.017678826 9.140278264 8.920542761 8.936982854 9.137957934 158437029 trzN Organic Remediation Herbicides related compound Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 8.261398398 8.189463285 8.636410517 8.251375272 7.789813958 7.947514672 7.502406246 7.380274926 7.600436917 7.480274619 7.773382968 84389266 CopA Metal Resistance Copper Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 8.902605362 8.785479811 8.566574838 8.409584766 8.275911794 8.391012518 8.818075269 8.269572592 9.027470217 8.13395279 8.057475251 8.167887192 209499614 mer Metal Resistance Mercury Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.460014892 8.192160199 8.172878542 8.164880498 8.089000701 7.782098149 8.292735805 8.168350416 8.31460357 7.934416414 170027537 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 8.656001588 8.359283207 8.655362944 7.578866108 7.415637976 7.566464581 8.318785081 7.630934207 8.32695492 7.579453773 7.522863294 7.321633394 163794539 mer Metal Resistance Mercury alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 8.175913832 8.16966137 8.115138252 8.443553063 8.404207344 8.052470773 8.719885648 8.197211663 8.236059433 8.235629838 8.595920269 32475395 sigma_24 Stress Sigma factors Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 8.232515303 8.311352043 7.333751845 7.194189503 7.340437009 6.798461874 6.564433272 7.295576325 7.152471606 7.56583809 239797245 sigma_24 Stress Sigma factors Desulfovibrio magneticus RS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio magneticus; 8.975871234 9.061962399 9.001943266 8.786028476 8.859952872 8.722735389 8.507968398 8.859308419 8.911843225 9.029863526 8.870639783 254446307 B_lactamase_C Antibiotic resistance Beta-lactamases Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 7.983687749 8.102237622 8.36427002 7.473503813 7.336031528 7.112914868 257148214 cspA Stress Cold shock Lactobacillus rhamnosus GG superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 8.199773533 8.018165426 8.289580163 7.911622827 7.74919223 7.563945447 7.567012435 7.391031141 7.563422264 7.698580025 7.663673319 256395266 endochitinase Carbon cycling Carbon degradation Chitin Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 8.515377828 8.365939114 8.475289507 7.758320822 7.579982563 7.911718381 7.537860262 7.311891577 7.943040036 7.578991099 7.478603679 7.918033833 21238921 gyrB other category gyrB Microbacterium imperiale superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium; 8.992084329 9.296850676 9.222909276 8.85751375 8.666958882 8.986775446 9.460088397 8.801454768 9.233935398 8.624370393 8.770641884 8.812009714 120590644 ureC Nitrogen Ammonification Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 8.869603287 8.459517965 8.481778205 8.30823299 8.22196281 8.354245925 8.403423551 8.256062778 8.232318395 8.173601053 8.361747339 140844180 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 8.577549586 8.459606216 8.799735396 8.173825038 8.175099865 8.132484184 8.085960582 8.263612228 8.056470281 8.31033675 8.194410192 8.349241289 261603821 vip virulence virulence protein Pectobacterium wasabiae WPP163 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium wasabiae; 6.889772397 8.055975928 113903948 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 8.259193378 8.093368552 7.752262283 7.782337197 8.239891394 8.147440195 8.082612255 7.975669705 7.907148401 7.753383789 89899942 CopA Metal Resistance Copper Rhodoferax ferrireducens T118 8.376458114 8.636055902 8.405731892 7.997651288 8.104454155 8.388729299 8.433396926 8.257609857 8.214719406 8.662282203 8.632743222 8.454935167 257798620 proV Stress Osmotic stress Desulfohalobium retbaense DSM 5692 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium;species:Desulfohalobium retbaense; 9.051388752 9.070303697 9.202129374 8.726354442 8.504145825 8.842758533 8.721715753 8.509393016 8.538675483 8.382877992 8.53540091 8.677580128 94471323 narG Nitrogen Denitrification uncultured bacterium 8.754011211 8.813631066 8.669074141 8.508735465 8.413842801 8.397047319 8.752086095 8.495360486 8.510785629 8.583637543 8.545653332 8.524600903 196228110 exaA Organic Remediation Chlorinated solvents Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 9.137416484 8.793748421 9.050925813 9.063284969 8.848465018 8.609449092 8.531274562 8.948702867 8.767756491 8.972333421 8.974654615 8.951215687 270509530 B_lactamase_C Antibiotic resistance Beta-lactamases Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 8.589258488 8.529660338 8.159805663 8.139066614 8.22335812 8.450134771 8.396008447 8.467996574 8.323839672 8.087006865 8.131041234 56312525 bbs Organic Remediation Aromatics BTEX and related aromatics Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 9.210372908 9.063409319 9.022342451 8.679042364 8.757440716 8.744311673 8.533194291 8.707572617 8.70967941 8.576754239 8.785166143 8.90098755 94423498 SilA Metal Resistance Silver Sphingomonas sp. SKA58 8.159000009 8.533995018 8.67226174 8.579806837 8.674049988 8.512634739 8.631710623 8.969190257 8.61092826 8.936399568 8.572938494 8.607834941 56686093 ChrA Metal Resistance Chromium Synechococcus elongatus PCC 6301 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus;species:Synechococcus elongatus; 8.96701319 8.869867965 9.013944554 8.58301915 8.446071511 8.21422606 8.178556334 8.225076477 8.422315989 8.353924909 8.22811127 8.417353193 83837996 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 8.207874455 8.497113063 8.390960237 8.575327545 8.281301861 8.487038809 8.595668624 8.849976575 8.72403884 8.762870306 8.53795427 8.209043437 73541511 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.695681235 8.588435425 8.540974589 8.217588401 8.157352849 8.230292623 7.853852502 7.892327218 7.864112541 7.938214053 8.118720793 82801423 alkB Organic Remediation Other Hydrocarbons bacterium alkW34 superkingdom:Bacteria; 8.506726667 8.122219496 8.568846951 8.293931578 8.174499064 8.436213275 8.488015106 8.231941283 8.223581799 8.058961569 212527988 Catechol Organic Remediation Aromatics Other aromatics Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 8.260551678 8.066936731 7.218445013 7.620012974 7.758085816 7.371534063 8.078819816 7.860882989 7.517281192 7.930081427 7.498456109 153092665 obgE Stress Radiation stress Mannheimia haemolytica PHL213 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Mannheimia;species:Mannheimia haemolytica; 8.782432614 8.625710584 8.796652302 8.363600134 8.325145094 8.232977703 8.185636775 8.308302832 8.491069628 8.585839174 8.237194515 8.462273747 167352221 cytochrome Energy process Energy process Shewanella halifaxensis HAW-EB4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella halifaxensis; 8.634474514 8.907038541 8.553494713 8.420789036 8.632557388 8.903029995 9.29882148 8.758771801 8.663873277 8.341563595 8.684416793 8.511757878 57168491 ppx Phosphorus Phosphorus utilization Campylobacter coli RM2228 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter coli; 8.549627535 8.640118225 8.68245307 8.244811158 8.077889295 7.916665987 8.212911918 8.04258112 8.222601866 8.204862562 7.956831637 8.277777289 51855417 AceA Carbon cycling Carbon degradation others Symbiobacterium thermophilum IAM 14863 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVIII. Incertae Sedis;genus:Symbiobacterium;species:Symbiobacterium thermophilum; 9.095553271 9.086325407 9.090668986 8.737376838 8.76708834 8.587624624 8.523357538 8.817572295 8.662218638 8.543408007 8.639930533 8.907169174 224555931 ureC Nitrogen Ammonification Paracoccidioides brasiliensis superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides; 8.31035443 8.029122879 8.566708327 8.011154688 7.811385366 7.571095414 7.692023485 7.735088702 8.151684873 7.704547504 7.600478229 7.860550012 118052942 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni KF-1 8.246957647 8.242933381 8.726890154 8.228871078 8.201370741 8.058936497 7.948612307 8.298491095 8.155082241 8.124258573 8.000526573 8.184793196 37197241 linC Organic Remediation Pesticides related compound Vibrio vulnificus YJ016 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 8.517937357 8.270016109 8.724345146 8.365291384 8.245121082 8.242021341 8.511321525 8.378215105 8.185399372 8.263442531 118036668 silC Metal Resistance Silver Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.89799055 8.035128564 7.914569979 7.765602587 7.766923496 7.954705408 7.921571311 7.894573708 8.112102952 53803713 obgE Stress Radiation stress Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 8.596446892 8.335972665 8.370833015 8.242928757 8.346504842 8.134169053 8.061245706 8.480924123 8.457035191 8.232565479 8.185897017 8.057899902 149183928 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 8.344032226 8.296431063 8.413723147 7.974462692 7.698047732 7.845194095 7.405372426 7.126937077 7.801899839 7.553577377 7.524600059 7.989810163 48857 B_lactamase Antibiotic resistance Beta-lactamases Pseudomonas aeruginosa superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.182633152 7.767865168 7.147430037 7.192111855 7.356778736 6.872208577 6.920538984 126236097 tfdA Organic Remediation Aromatics Chlorinated aromatics Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 9.884099207 10.22114464 9.66286422 9.557416082 9.68915329 10.0338328 10.25036209 9.799054412 9.924618837 9.836048739 9.968638528 9.755413268 62003575 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.1277218 9.218384955 9.230828695 9.022895717 8.785101112 8.619581121 9.051358599 8.987210099 9.036091376 8.759683684 8.671072582 8.842108396 116625397 exaA Organic Remediation Chlorinated solvents Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 8.257239569 8.380917432 8.558311968 7.228941446 7.505044466 7.844985503 8.32253554 7.578797455 7.767987467 7.657341661 7.60827214 258566800 katE Stress Oxygen stress Uncinocarpus reesii 1704 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 8.441817532 8.631615501 8.599803447 7.6422796 7.743502066 7.617965479 7.296062416 7.604472245 7.778140343 7.49922157 7.628446871 163747501 katE Stress Oxygen stress Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 9.07641076 8.650739103 9.018876871 8.510718176 8.120959818 8.158739343 7.990043008 8.089070382 8.347691697 8.445211612 8.381806878 8.598192018 29150151 nosZ Nitrogen Denitrification uncultured soil bacterium superkingdom:Bacteria; 8.348154505 8.14096125 7.849299019 7.75346335 7.696234671 7.638161362 7.514265259 7.778101178 7.801060017 7.613802186 7.583816152 108799055 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium sp. MCS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.68689793 8.626564942 8.424895078 8.208516385 7.97537123 8.16968185 8.05389557 8.174285545 8.085511093 8.131854569 8.237949126 146283057 cytochrome Energy process Energy process Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 10.9927101 10.9079223 10.96167704 10.21538554 10.09020201 10.37886158 10.16730338 10.46101729 10.43617763 10.73026201 10.80018644 259506500 pcc Carbon cycling Carbon fixation Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 8.989049862 8.909122723 8.812207135 8.446072075 8.425346449 8.075402145 8.32623482 8.167885253 8.306586081 8.13322192 8.006283013 8.364886822 161897976 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 10.51658233 9.705576523 9.528049249 9.160998326 9.266691145 9.153374571 9.238323564 8.87051337 9.655190496 9.279930408 9.488407393 9.0809792 89145106 ppk Phosphorus Phosphorus utilization Microbacterium schleiferi superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium; 8.488806707 8.408878021 8.343749711 8.666579544 8.942786759 8.656329838 9.060796032 8.45927702 8.605708115 148273952 TerC Metal Resistance Tellurium Clavibacter michiganensis subsp. michiganensis NCPPB 382 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 9.548120184 9.317636781 9.040641693 8.9393859 9.254885034 9.135546937 9.192660287 9.174011107 9.454276416 8.978690619 8.986447469 9.009758714 227548972 ureC Nitrogen Ammonification Corynebacterium lipophiloflavum DSM 44291 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium lipophiloflavum; 9.396721923 9.369256293 9.62355612 8.926977706 8.78215635 8.635658836 8.497181865 8.469438718 8.65519331 8.628887756 8.622916587 8.864024205 71558389 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 8.66830928 8.646693053 8.434188314 8.406681809 8.593682014 8.216930946 8.096585811 8.594903607 8.328210237 8.332426298 8.479788259 169868332 glx Carbon cycling Carbon degradation Lignin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 8.227432932 8.29054104 7.601130889 7.415297134 7.529516096 7.27334719 7.035681682 7.217173062 6.972060263 7.580400318 145570075 PobA Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas stutzeri A1501 8.743189448 8.626050001 8.641136852 8.125892304 8.293642005 8.456462288 8.452541326 8.35790057 8.668041324 8.5940019 8.695567316 8.259564851 118435096 phn Organic Remediation Herbicides related compound Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 8.252631438 8.363412882 8.408503923 7.774215902 7.704602336 7.932263729 8.072111428 7.638068668 7.567606725 7.487659808 7.922665654 218719659 phenol_oxidase Carbon cycling Carbon degradation Lignin Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 8.101398545 7.957902823 7.622332214 7.514181005 7.500502313 7.363751395 7.06249489 7.973628582 7.225943696 6.891946149 7.386936923 163761222 PobA Organic Remediation Aromatics Aromatic carboxylic acid Hoeflea phototrophica DFL-43 8.065397019 7.801597295 8.10069487 7.711058416 7.666733749 8.071722777 7.57924499 6458973 pilin virulence pilin Deinococcus radiodurans R1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 9.041655385 8.988644211 9.072347589 8.681539402 8.279403515 8.353756193 8.743122954 8.516167757 8.477559234 8.646221932 8.410199125 8.599753986 118660516 atzC Organic Remediation Herbicides related compound Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 9.47389681 9.755271023 9.158893142 9.49141966 10.10374538 9.952906238 10.40322124 10.22275197 9.622235208 9.798560741 10.0827895 10.13416347 194456300 ArsC Metal Resistance Arsenic Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 8.31719098 8.254347792 8.590233281 8.121047514 7.970304056 7.974410207 7.891803606 8.115801109 8.051441585 8.229342125 8.164013557 8.233917189 33284998 chnC Organic Remediation Other Hydrocarbons Acinetobacter sp. NCIMB9871 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 9.010408898 8.995297205 9.109172007 8.474135293 8.399452426 8.285887475 8.246325225 8.32906616 8.09125678 8.114103965 7.872944411 8.598422542 254488622 phoB Stress Phosphate limitation Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.884161172 8.726895762 9.001071609 8.377316537 8.650268018 8.818923188 8.408477245 8.564107765 116226827 exaA Organic Remediation Chlorinated solvents Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 8.64898107 8.764137297 8.682599909 8.583503124 8.749019826 8.443451302 8.499462307 8.778722993 8.596314477 8.901783468 8.934146101 8.558921165 220910789 gyrB other category gyrB Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 9.101517612 9.181958313 9.012382174 8.769836813 8.661305328 8.716188719 8.814393517 8.546271001 8.981563506 8.390918299 8.486845062 8.532169126 6453624 trzN Organic Remediation Herbicides related compound Streptomyces coelicolor A3(2) 9.01193853 9.109219736 8.620259621 8.824482132 8.67322436 8.827629029 9.108781644 8.942021038 8.914467679 8.680023461 8.57356221 156190180 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 8.823201228 8.591990372 8.372494235 8.033610693 8.080898099 8.419842154 8.217455738 8.575210124 8.166396252 8.161968167 8.046193509 88789151 MFS_antibiotic Antibiotic resistance transporter Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 9.04793038 8.965618975 9.158311092 8.914643006 8.402399237 8.62203867 8.536300037 8.692276569 8.446048572 8.637671619 8.607254723 8.884271443 160882868 nrfA Nitrogen Dissimilatory N reduction Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 7.923547902 8.058324991 7.627024259 7.534406051 7.455412845 7.931088817 7.570024036 7.624039124 7.534792361 7.372707841 7.275638139 254515221 AceB Carbon cycling Carbon degradation others gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 9.44769305 9.492660049 9.433856777 8.725002213 8.624147426 8.686988865 239910437 ahpF Stress Oxygen stress Thermococcus gammatolerans EJ3 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus gammatolerans; 8.636817049 8.483271738 8.607588648 8.118398866 8.064008146 8.167014877 7.806976261 8.030625565 8.13901422 7.998700494 7.719999392 8.176889367 209543412 ahpF Stress Oxygen stress Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 8.418562325 8.509635951 8.475745321 8.220086213 8.44682614 8.425885169 8.691284524 8.546532719 8.717305456 8.595646763 8.837875267 8.714998421 198252074 ArsC Metal Resistance Arsenic Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 8.775334009 8.731596156 8.767633415 8.475278322 8.391656225 8.321552998 8.224441278 8.522935398 8.470749445 8.36048503 8.499006305 8.366230464 86164313 aoxB Metal Resistance Arsenic Marinomonas sp. MED121 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 7.5782518 7.36718557 7.538125049 7.353493425 7.31926986 7.976112476 7.365469101 7.387860526 7.608169484 76558649 ZntA Metal Resistance Zinc Natronomonas pharaonis DSM 2160 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natronomonas;species:Natronomonas pharaonis; 8.481518394 8.520441085 7.373235807 7.677318127 7.956477647 7.715006012 7.288101474 7.517520787 7.765037202 7.912029664 214045526 sigma_70 Stress Sigma factors Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.445112465 7.557285991 7.342555091 7.472529645 196228866 sigma_24 Stress Sigma factors Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 9.527520564 9.20090035 9.076062411 8.823572636 8.679525642 8.416674064 264661965 fnr Stress Oxygen stress Brucella sp. 83/13 8.34248547 8.08969466 8.00237225 8.366703753 8.255381635 8.385587349 8.034282296 8.060725061 90413673 AceB Carbon cycling Carbon degradation others Photobacterium profundum 3TCK superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 9.407823018 9.403474945 8.707910424 8.271024684 8.461803832 8.273504608 8.211401185 8.202848169 8.648558664 8.436158236 8.796118794 29652464 narG Nitrogen Denitrification uncultured bacterium 9.616763539 9.291326589 9.263334273 9.449849735 9.440602619 9.160875321 9.228764133 9.380458949 9.40139786 9.438520588 9.456907239 9.325524088 221633804 pstC Stress Phosphate limitation Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 8.076238748 8.119924154 8.414390765 8.022330133 7.810862467 7.885708066 7.590290584 7.374453575 8.314927405 7.371092062 7.527255731 148260519 glycosyl_transferase_EPS Bioleaching EPS Acidiphilium cryptum JF-5 7.552292455 7.79486179 7.68711994 7.966141179 7.666523789 7.948660294 7.73153831 7.862131318 92118314 fnr Stress Oxygen stress Nitrobacter hamburgensis X14 8.470137788 8.314715151 8.493227155 7.960866362 7.74567874 8.082367375 7.99718042 7.892251861 8.110670418 7.59650154 7.549698853 7.884233173 177840256 hly virulence hemolysin Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 9.034103162 8.913164409 8.847387976 8.14332712 8.495385483 8.389790166 8.760939872 7.738645103 8.84210264 8.49824189 8.534183041 8.554318946 133738798 AceB Carbon cycling Carbon degradation others Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 10.41134207 10.58620369 10.87642229 10.14069111 9.86340633 10.06975137 10.3565491 10.00797731 10.47762934 10.14837839 9.995044918 10.29585861 13249563 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.107791927 8.354031442 7.716025684 7.711477938 8.196192113 8.292309194 8.004890775 8.170362985 8.085566144 7.96680142 8.20850081 134053001 sigma_38 Stress Sigma factors Desulfotomaculum reducens MI-1 8.877123579 8.832579111 9.087040792 8.247303372 8.130930806 8.243889463 7.986447433 7.739993941 8.242154014 8.024813978 8.019609794 8.445885666 50842708 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Propionibacterium acnes KPA171202 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 8.367029743 8.172993806 8.450034836 7.859430586 7.568003715 7.717321115 7.873197267 7.518001921 8.201090191 7.666640658 7.617223301 7.982604604 227295600 nplT Carbon cycling Carbon degradation Starch Thermoactinomyces vulgaris 8.458521514 8.409269506 8.522940393 8.124774981 7.968188936 7.933420834 7.878302625 7.776182566 8.14668883 7.934347193 7.877619523 8.00680348 219946679 pcaG Organic Remediation Aromatics Other aromatics Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 9.72515204 9.533582753 9.637860178 8.723949431 8.697972061 8.553981513 257066865 pstA Stress Phosphate limitation Anaerococcus prevotii DSM 20548 8.797608384 8.595607707 9.295805268 8.995121205 9.244709012 9.048136622 8.802572665 9.419293403 8.612699868 9.011722726 9.07095875 9.407139462 167841181 type_III_secretion virulence secretion Burkholderia thailandensis MSMB43 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 8.465323828 8.764702396 8.807440681 8.356161545 8.875210167 8.43688307 8.781236401 8.850777867 8.553526531 267983266 narI Stress Oxygen limitation Edwardsiella tarda EIB202 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella tarda; 8.48882297 8.404119329 8.661358619 8.315943733 8.408226603 8.409504219 8.416786567 8.547480283 8.548825627 8.229825024 8.417295342 8.244043599 205329507 nplT Carbon cycling Carbon degradation Starch "5],12:i:- str. CVM23701" 8.986411206 8.694848282 9.020234606 8.564369146 8.545072652 8.340574988 8.304599834 8.191453421 8.24023035 8.234729713 8.261721018 8.171909387 254434698 sigma_70 Stress Sigma factors Nitrosococcus oceani AFC27 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 8.383571943 8.173613227 8.501196969 7.764207674 8.118960899 8.315250175 8.411162464 7.72052046 8.314518216 7.766575101 8.206185704 8.553029718 158425910 grpE Stress Heat shock Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 8.108196109 8.426802431 8.404358302 8.472073155 8.280372287 8.517452385 8.769255625 8.732448477 8.689261146 8.418260067 8.60315932 77544350 phoB Stress Phosphate limitation Pelobacter carbinolicus DSM 2380 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter carbinolicus; 9.438075571 9.658635393 9.693595071 8.904532334 8.997867685 8.909209043 8.608688275 8.556143571 8.738313508 8.798325654 8.970228196 211958748 pcpB Organic Remediation Herbicides related compound Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 9.164354759 9.474218856 9.229174531 8.358516294 8.016659788 8.69225369 9.053134559 8.643161423 8.708580614 8.358202555 8.447292956 8.475426096 78167237 SMR_antibiotics Antibiotic resistance transporter Pelodictyon luteolum DSM 273 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon luteolum; 8.631253361 8.462736126 8.203600511 7.925154597 7.863459468 7.643465665 7.626531125 7.74975023 7.832695783 7.98540667 7.853119523 219945425 sigma_24 Stress Sigma factors Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 8.726425004 8.632380508 8.92654395 8.229808778 7.986547677 8.407165052 8.448627773 8.121485943 8.098970721 8.113524566 8.229064995 29160341 exoglucanase Carbon cycling Carbon degradation Cellulose Trichophaea saccata superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Pezizomycetes;order:Pezizales;family:Pyronemataceae;genus:Trichophaea; 8.737045383 9.25133942 8.559328022 8.660956444 8.437438674 7.761569471 8.49299516 8.758689782 8.793210613 8.930385091 29604358 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 9.397098662 9.456667799 9.72636346 8.892403247 8.745526978 8.762557306 8.712705948 8.574336909 8.687983526 8.587524149 8.694818612 9.024868311 209871375 CopA Metal Resistance Copper Oligotropha carboxidovorans OM5 8.015796097 7.85645107 7.528953047 7.626610354 7.669390845 8.13018451 7.411422502 7.599180601 7.178531108 121553501 pcc Carbon cycling Carbon fixation Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 8.734558081 8.686777401 8.498989984 8.522216273 8.512818101 8.583488412 8.814471332 8.852564557 8.82132191 8.71388452 8.777874658 8.850139739 238716451 SMR_antibiotics Antibiotic resistance transporter Yersinia bercovieri ATCC 43970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 9.372459297 9.414955333 9.237410076 8.989134471 8.884939964 8.94229514 9.064770732 8.848078718 9.165369687 8.888941953 9.032785902 8.869391994 116091709 glnR Stress Nitrogen limitation Oenococcus oeni PSU-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Oenococcus;species:Oenococcus oeni; 9.155861556 8.937769763 9.326686017 8.502813479 8.486302245 8.361403893 8.362264039 8.150611679 8.474595792 8.401559629 8.323002184 8.769851926 161162680 alkK Organic Remediation Others Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 8.719799649 8.272866967 8.162561338 8.132509545 8.337920757 8.36775083 8.215408888 8.523932814 8.233075306 8.210981893 8.007967308 116613198 ChrA Metal Resistance Chromium Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.053611318 7.173317418 2072731 Quinoline Organic Remediation Aromatics Polycyclic aromatics Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 9.273149166 9.127161841 9.110376138 8.901999774 8.953314173 8.609869929 8.751326796 9.239915745 8.662475258 9.237918052 9.117055373 9.289604229 114227201 dsrA Sulphur sulfite reductase Alkalilimnicola ehrlichei MLHE-1 8.622298707 8.495412357 8.495859939 9.109626964 8.854235468 8.753008725 8.704829906 8.832422175 8.640375654 8.706529985 8.75358638 8.359756562 150274620 cda Carbon cycling Carbon degradation Starch Bacteroides capillosus ATCC 29799 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides capillosus; 8.273268324 8.066449026 8.310226435 7.370470241 7.278382599 7.471574637 7.237173945 6.985491509 7.148407586 161395047 nagG Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 9.742230146 9.508575979 9.933166823 9.416547206 9.325864663 9.170647434 8.931873309 9.326998404 9.130972837 9.491423242 9.238671949 9.414667753 86355824 phn Organic Remediation Herbicides related compound Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 9.145220567 9.066495823 8.840067929 8.933671248 8.634884848 8.589780842 8.754198066 8.673293729 8.250980468 8.982984679 8.914512055 8.763805597 2662054 AceA Carbon cycling Carbon degradation others Hyphomicrobium methylovorum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 8.637055204 8.56900691 8.167442826 7.526568916 7.441156399 7.895792258 8.114095642 7.461205629 8.124760758 7.451421412 7.655051829 150036142 sox Sulphur Sulphur oxidation endosymbiont of Ifremeria nautilei superkingdom:Bacteria; 8.165036667 7.999133011 7.422914698 7.544365646 7.385868672 7.135200353 7.443444446 7.599984496 7.419325586 7.131458813 7.434585735 118658467 silC Metal Resistance Silver Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 9.189534858 9.042356376 9.083507096 8.851163447 8.899325365 8.720198839 8.52123894 8.839648349 8.867267468 8.637692741 8.739082027 8.824196346 192764388 narG Nitrogen Denitrification uncultured bacterium 8.960298772 9.036934753 8.812992974 8.113313197 8.239148071 9.084080968 9.400741672 8.095816654 9.343540453 8.450556897 8.871738984 8.533983806 83816541 nosZ Nitrogen Denitrification Salinibacter ruber DSM 13855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 8.296130845 8.495954278 8.574614227 8.873064333 8.722554087 8.408574646 8.882312058 8.999406804 8.391866028 8.900290022 8.617595038 8.66958197 197714255 ureC Nitrogen Ammonification Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 8.600000019 8.27277208 8.240434771 7.735340562 7.752798075 7.974704217 8.10646089 7.500703566 8.082276925 7.628706962 7.465370429 7.860183981 89045424 hly virulence hemolysin Oceanicola granulosus HTCC2516 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 8.539201092 8.77575541 8.512698331 8.608841655 8.198649359 8.171511447 8.160859782 8.139531561 8.603961877 8.266915573 7.804318947 8.184802069 42782712 ureC Nitrogen Ammonification Bacillus cereus ATCC 10987 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 8.548893529 8.477769707 8.56515265 8.020867263 7.970023246 7.920268953 7.584232442 7.549063459 8.101273517 7.726935097 7.364422776 7.913202048 1220220 ophC Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 8.513295383 8.432459007 8.563397627 7.796479337 8.342481595 8.313759545 7.810329874 8.432891935 8.189319799 8.277885433 8.226213992 218130145 catB Organic Remediation Aromatics BTEX and related aromatics Bacteroides eggerthii DSM 20697 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides eggerthii; 9.163651804 8.690346608 8.601503366 8.988089385 8.943002073 8.521400558 9.287444998 9.130262879 9.008878147 8.83398918 8.672142351 8.792785596 66048091 glnA Stress Nitrogen limitation Pseudomonas syringae pv. syringae B728a 8.59939658 8.76612518 8.838310277 8.263721625 8.259819116 8.195850493 8.220743289 8.282910465 8.36749113 8.412387971 8.36362626 8.368088566 149121623 endoglucanase Carbon cycling Carbon degradation Cellulose Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 8.276015454 8.566791123 8.564586333 8.6877172 8.63580542 8.566772638 8.669073029 9.062934036 8.669233975 8.691281347 8.487434412 8.6860548 62003515 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.375489719 7.977032968 8.408421139 7.631258684 8.279072129 8.31358623 8.045333591 7.978578473 8.479062989 7.926917422 8.408374687 8.055038563 45386151 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 8.048837496 8.252747115 8.069406883 8.154001006 7.77501384 7.538427575 7.914413903 8.351796312 7.74095061 7.445521023 7.714396526 169188439 atzC Organic Remediation Herbicides related compound Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 8.730866543 8.492372811 8.608733528 8.260284559 8.339735474 8.328749846 7.991568684 8.065111169 8.160003802 8.059509431 8.053262203 8.310164453 260425307 fnr Stress Oxygen stress Citreicella sp. SE45 8.456891717 8.773572251 8.822721793 8.412193603 8.141483563 8.255384345 8.456067825 8.26652325 8.610247719 8.148741832 8.105106025 8.248334402 84391955 pimF Organic Remediation Aromatics Aromatic carboxylic acid Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 8.394780212 8.336992613 8.386758439 7.580857672 7.51330577 7.679113973 8.085756236 7.688970897 7.663461614 7.87602085 7.448376443 61653195 nifH Nitrogen Nitrogen fixation uncultured proteobacterium DelRiverFos13D03 superkingdom:Bacteria;phylum:Proteobacteria; 9.12763606 9.43824386 9.513571293 8.250828264 8.735363062 8.977169421 9.448856956 8.362959929 9.537746992 8.839475108 8.96962256 8.894977384 148547945 nhh Organic Remediation Aromatics Nitoaromatics Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 9.076482981 9.038440369 9.35773854 8.475714655 8.761779119 8.855293239 8.484932759 8.525114973 8.64961609 8.62228533 9.085579722 8.769255526 83309358 HBH Organic Remediation Aromatics BTEX and related aromatics Magnetospirillum magneticum AMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 8.347116157 8.265037962 8.429555826 8.462645795 8.173501051 8.645079954 8.363590445 8.723719559 8.371781406 8.513443411 8.06390038 110679310 pcc Carbon cycling Carbon fixation Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 8.538459349 8.486544585 8.623291166 7.987828057 8.060721839 8.077562024 8.057139729 7.958950938 8.012349903 8.253168923 8.132164409 14025071 linB Organic Remediation Pesticides related compound Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 7.385958674 7.625781644 7.789546344 7.904579454 7.511145799 8.274906036 7.650671767 7.537889063 7.535823855 88180854 tfdA Organic Remediation Aromatics Chlorinated aromatics Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 8.333442717 8.352080766 8.751239745 8.149473674 8.201552977 8.271736156 8.073018634 8.069970844 8.606880344 8.288181901 8.475478822 8.322129627 116697212 pstB Stress Phosphate limitation Syntrophobacter fumaroxidans MPOB 8.391517764 8.14967402 8.58502831 7.656647921 7.204825415 7.614776646 7.403884577 7.458992142 7.676569024 126179822 pstB Stress Phosphate limitation Methanoculleus marisnigri JR1 8.718877245 8.769207313 8.609109825 7.860789083 7.862273898 8.104052479 7.803942612 8.793780086 8.14155161 7.924487861 8.202928985 46205560 ara Carbon cycling Carbon degradation Hemicellulose Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 9.538760705 9.475287333 9.610952887 8.939040233 9.038299361 8.751229676 9.171685861 9.01725125 8.94338893 9.073652687 9.221938207 9.397625827 118003718 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.065199413 8.303182455 8.262557579 7.960548976 7.984515448 8.552013716 8.18116011 8.477849928 8.825719776 8.518211339 260769120 endochitinase Carbon cycling Carbon degradation Chitin Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 10.02641946 10.02716621 9.994057774 9.361159337 9.268366941 9.25511954 9.281569039 9.995303 186475315 MFS_antibiotic Antibiotic resistance transporter Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.079843988 8.000266618 8.526734664 8.485200967 8.021317928 7.650264101 7.865722514 8.229635825 7.826035429 7.848348888 7.630199073 5139556 pcaG Organic Remediation Aromatics Other aromatics Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 9.251718327 9.14406057 9.140322786 8.900758209 8.821069977 8.894030102 9.196813696 8.677463507 9.0585469 8.89176731 9.342454848 9.205412936 167648687 SMR_antibiotics Antibiotic resistance transporter Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.826440245 9.008790112 8.54835034 8.586159128 8.883638762 9.191011651 9.128372167 9.13116888 9.116015053 9.180015321 9.335589142 9.039341973 189206760 chnB Organic Remediation Other Hydrocarbons Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 9.249207703 9.359979701 9.321399535 8.744688005 8.718331168 8.535296103 9.277631019 8.687923397 9.528186172 8.592270351 8.154502767 8.616021803 51832295 B_lactamase_A Antibiotic resistance Beta-lactamases Pseudomonas luteola superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 9.546454446 9.418042402 9.658697466 8.718142239 8.596710199 8.952442027 8.625092911 8.568945284 8.674210288 8.950679398 157320937 trzE Organic Remediation Herbicides related compound Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 8.076193704 8.042473704 7.666579555 7.491461409 7.426770011 7.384450497 7.603993804 7.816667451 7.476107796 7.50263688 7.886083261 34397617 sigma_24 Stress Sigma factors Porphyromonas gingivalis W83 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas;species:Porphyromonas gingivalis; 7.024042809 7.288719034 56475910 nirS Nitrogen Denitrification Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 7.809434518 7.586857728 7.62206408 7.241341231 7.53643559 7.708387536 7.61244537 7.67267144 7.447906576 68518304 Arylest Organic Remediation Aromatics Other aromatics Shewanella baltica OS155 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 10.31362649 9.742294871 9.974914596 9.188401868 8.733829273 8.965558458 9.045483026 9.291952226 9.330061751 121594932 CadA Metal Resistance Cadmium Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 8.738122143 8.791229286 9.12069296 8.461239422 8.55915682 8.462125645 8.540681345 8.840024648 8.884660416 8.781084505 8.499547766 8.573525383 118569315 pulA Carbon cycling Carbon degradation Starch Mycobacterium ulcerans Agy99 8.156183248 8.25965032 8.018740837 8.144200536 7.782191047 7.663741268 8.055258889 8.014926721 7.757676978 7.611916673 7.843020563 153899368 bclA Organic Remediation Aromatics Aromatic carboxylic acid Methylobacterium extorquens PA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 9.319845376 9.410662158 8.790269069 8.511439354 9.048970987 9.081801686 9.76282908 9.326022922 9.232147601 8.995006932 9.367292625 8.968797496 84509704 CopA Metal Resistance Copper Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 10.20017588 10.05732475 10.13743662 9.947038727 9.781637813 9.620048164 9.831849332 9.72573992 9.294524013 9.594604606 9.666006719 9.681170859 28901493 pulA Carbon cycling Carbon degradation Starch Vibrio parahaemolyticus RIMD 2210633 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 9.617181514 9.246752553 9.645929264 8.674622063 8.770319378 8.613160046 9.070975057 8.558467271 8.966973978 9.028373818 9.338911463 9.086264539 111019965 catB Organic Remediation Aromatics BTEX and related aromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 9.130470773 9.194245123 9.255511428 8.484358947 8.406031133 8.585219632 9.090988751 9.003158686 9.289428455 8.395883272 8.539552801 8.47932194 184201552 pstA Stress Phosphate limitation Kocuria rhizophila DC2201 9.830214698 9.703668218 9.661367767 9.322284151 9.131871819 9.307252358 9.086915356 9.142274501 9.131953117 9.382991017 9.395269714 9.489462778 218461295 nmoA Organic Remediation Aromatics Nitoaromatics Rhizobium etli Kim 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 9.173165723 9.21160593 8.865130916 9.047131702 9.026438661 9.656052721 9.178032353 9.884099459 9.470965019 9.601877597 9.602638288 46139665 Catechol Organic Remediation Aromatics Other aromatics Gibberella zeae PH-1 7.952835086 8.058282237 8.410148754 7.718535089 8.176449967 8.231576797 8.662548864 8.303964523 8.43763474 7.84925041 8.257794521 8.254681714 269306418 pstA Stress Phosphate limitation Xylanimonas cellulosilytica DSM 15894 9.642486428 9.558353986 9.022476841 9.170432609 8.748618855 9.006659997 9.380255995 9.209180094 9.077850811 9.261988857 9.243231168 9.137500586 19069938 tfdB Organic Remediation Aromatics Chlorinated aromatics Novosphingobium lentum 8.525944785 8.915585221 8.673666599 8.452664232 8.533688452 8.509218284 8.550935129 8.537347444 7.682477685 8.833240733 8.79368836 8.479389177 148573136 gyrB other category gyrB Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 8.117058753 8.220620045 8.689414591 8.148325819 8.414587493 8.273045012 8.151687044 8.432013807 8.663005483 8.607579845 8.541255233 8.483942833 189467985 sigma_24 Stress Sigma factors Bacteroides intestinalis DSM 17393 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides intestinalis; 8.012012349 7.499549792 8.01383313 8.189481664 8.260148264 8.599371831 8.265554886 8.215516204 72161352 pcc Carbon cycling Carbon fixation Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 8.536703232 8.888134166 8.543926586 8.196582965 8.362457303 8.605083324 8.683228844 8.702911839 8.488478777 8.406022244 8.656361711 8.465014067 52348978 hrcA Stress Heat shock Bacillus licheniformis DSM 13 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 7.669699458 7.621282508 7.38907813 7.323700347 7.500641144 7.802406649 7.30348983 7.396934879 118007842 nmoA Organic Remediation Aromatics Nitoaromatics Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 8.570564177 8.54033767 8.565592861 8.144791914 8.237780683 8.307529198 8.434613216 8.177656219 8.730822265 8.631992129 8.827568372 8.495757564 91697715 sox Sulphur Sulphur oxidation Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 9.108181418 8.073118136 8.323660808 8.301429889 7.921059771 8.308226606 7.718970182 8.462423974 8.008995919 8.299322164 8.528509296 8.112368468 187725094 fnr Stress Oxygen stress Ralstonia pickettii 12J 8.740644791 8.747693285 8.834281197 8.239856748 8.173074011 8.45166477 8.353812169 8.023193131 8.437207333 8.249652931 8.214915558 8.36491969 145238310 tftH Organic Remediation Aromatics Chlorinated aromatics Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 9.326717843 9.31757001 9.533859254 9.076163741 9.012885248 9.064350109 9.155064642 8.983630595 9.321742815 8.804121485 8.741174244 9.121942995 239806525 amyA Carbon cycling Carbon degradation Starch Geobacillus sp. WCH70 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.959945506 7.833396046 8.219868816 7.807492643 7.570352501 7.521251416 7.486135517 7.713631785 7.945111966 7.63472603 7.498442193 7.7020813 134103521 pstC Stress Phosphate limitation Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 7.965690865 8.135546577 7.889838181 7.754134481 7.421430296 7.773957751 7.860157797 7.36550941 7.934415362 7.142892484 7.379481914 91787403 mer Metal Resistance Mercury Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 8.733477507 8.736567593 8.838920438 8.547122619 8.47050287 8.205127388 8.745169807 8.628506712 8.43462106 8.798064591 8.712746223 8.665022687 51243151 catB Organic Remediation Aromatics BTEX and related aromatics Sphingomonas sp. tfd44 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.269826229 7.923536774 8.162609617 8.260012482 8.261666665 8.303600743 8.517863963 8.411761624 8.476969672 8.317564021 8.383399555 237885177 glnA Stress Nitrogen limitation Micromonospora sp. ATCC 39149 8.11979983 8.07025978 8.066855656 8.008330785 7.814587976 7.93797009 8.168507462 8.523553021 8.084916494 8.160688067 8.104630941 157827778 TerC Metal Resistance Tellurium Rickettsia bellii OSU 85-389 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales;family:Rickettsiaceae;genus:Rickettsia;species:Rickettsia bellii; 8.478748946 8.521782055 8.74242745 7.717148472 8.060158255 8.231294583 7.568462466 7.599074711 7.973332862 226726369 sox Sulphur Sulphur oxidation uncultured bacterium superkingdom:Bacteria; 8.533127349 8.28436882 8.507880528 8.449646726 8.248594147 7.906367162 8.179597304 8.47399986 8.608486729 8.451384363 8.130040547 8.488295442 242210489 phenol_oxidase Carbon cycling Carbon degradation Lignin Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 9.054170865 8.966244437 8.657935379 8.626451243 7.913125637 8.081715585 8.149440662 8.118408325 7.912469182 8.133988564 55772604 pilin virulence pilin Thermus thermophilus HB8 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 9.2380424 9.023374934 9.254833083 8.783109016 8.723838084 8.728997248 8.612951365 8.944230118 8.548704694 8.732616488 8.813487517 8.869694756 92914804 pcc Carbon cycling Carbon fixation Mycobacterium sp. KMS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 9.429697084 9.426819767 9.556347355 8.887083221 8.894157785 8.848525596 8.690116842 8.687226656 8.826131967 8.767181356 8.89464804 9.053954423 158329924 pcpE Organic Remediation Herbicides related compound Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 8.665991843 8.524703442 8.515933134 7.840985097 7.960953949 8.39487351 8.466066879 7.945354156 8.363147428 8.056537477 8.077508305 8.238587926 10640538 cytochrome_b Bioleaching Electron transport Thermoplasma acidophilum;Thermoplasma acidophilum DSM 1728 8.523852846 7.783255263 8.144056971 8.246519458 8.191902352 7.957634926 8.057483005 7.816764382 8.075831719 7.57886926 7.843330156 7.611628502 149276186 mannanase Carbon cycling Carbon degradation Hemicellulose Pedobacter sp. BAL39 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter; 8.871499753 8.940888445 9.158376268 8.305023082 8.210812538 8.36000233 8.162102252 8.356977657 8.356901122 8.430936573 8.558224548 8.511630251 16331540 pstB Stress Phosphate limitation Synechocystis sp. PCC 6803 8.616392485 8.264463945 8.49796452 7.933268069 8.261804303 7.885642427 7.55073062 7.906257942 8.148469686 7.788356997 7.991943141 76803680 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 8.663587165 8.756550251 8.891143108 8.659235528 8.323379856 8.207879861 8.592992275 8.52899191 8.658102766 8.59599339 108802257 tfdB Organic Remediation Aromatics Chlorinated aromatics Mycobacterium sp. MCS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.372729377 8.359536394 8.429426412 7.783041553 7.990564618 7.698380405 7.537677482 7.645445865 8.415524221 8.086970381 7.87209641 7.833288137 254818781 narH Stress Oxygen limitation Mycobacterium intracellulare ATCC 13950 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 8.936356308 8.888096849 8.443986838 8.733684297 8.965389452 8.284842953 8.461759023 9.166664561 9.006461346 9.373735038 9.077899689 187725341 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia pickettii 12J 9.372278002 9.49022691 9.832008476 9.613751654 9.615015285 9.478436989 10.1371293 9.435450137 9.940459005 9.972575995 10.17944842 85831339 phoA Stress Phosphate limitation Leeuwenhoekiella blandensis MED217 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Leeuwenhoekiella;species:Leeuwenhoekiella blandensis; 8.651255382 8.850003276 8.686737462 8.325839168 8.079647722 8.19593615 7.842604691 7.809563966 7.923001181 8.018335288 8.282433891 240103616 pstB Stress Phosphate limitation Thermococcus gammatolerans EJ3 9.026058456 9.117299281 9.077624228 8.202726874 8.424702187 8.281892625 8.126657436 8.016836787 8.074181393 7.89141511 8.118617235 8.44301948 182678865 AceB Carbon cycling Carbon degradation others Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 8.442694071 8.220356401 8.596341595 7.644409992 7.759515696 7.891952323 7.705394436 7.316925447 8.30423014 7.561354434 7.405533427 7.750486489 214036167 bphA Organic Remediation Aromatics Polycyclic aromatics marine gamma proteobacterium HTCC2148 8.950528399 8.944019488 9.178905697 8.46044768 8.308678714 8.250630849 7.961416788 7.773863084 7.898911658 7.766176258 7.987555598 8.431444232 199584251 CopA Metal Resistance Copper uncultured bacterium superkingdom:Bacteria; 8.761837325 9.158327198 8.866961287 8.519881206 8.547789122 8.937987411 9.003021222 8.857262942 8.740006303 8.553061648 8.723634944 8.752753515 21220209 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.430713893 8.494828679 7.963855372 8.222463996 8.043698366 8.449984115 7.55112408 8.615456014 8.01384891 8.06200395 7.997939684 7672528 catechol_B Organic Remediation Aromatics Other aromatics Geobacillus thermoglucosidasius superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.547898604 8.67433111 8.473257261 7.646789508 7.379157074 7.824731041 7.714034679 7.236031632 7.947365998 7.503343688 7.562631694 7.898529856 256676977 sigma_24 Stress Sigma factors Streptomyces sp. SPB78 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.979798871 9.173860547 9.109404742 8.526286642 8.360717306 8.463786948 8.343007769 8.264211947 8.631839606 8.411034877 8.206369431 8.565520679 148657873 CopA Metal Resistance Copper Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 8.23853226 8.326239023 8.75707176 8.40616529 8.391510343 8.215408387 8.489486911 8.911693347 8.965092395 8.797226369 9.048585844 68348432 ureC Nitrogen Ammonification Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.462911659 8.583951736 8.499645021 8.017858523 7.761453563 8.130089755 7.952192973 7.780225638 8.106497088 7.846546781 7.871082105 8.032896074 46201746 sigma_70 Stress Sigma factors Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 9.709302804 9.584787086 9.934335331 9.165723111 9.047781929 8.922084297 8.765969524 8.998407279 8.941463932 9.23662773 118503857 sigma_70 Stress Sigma factors Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 8.892099772 8.912796001 8.771351153 8.985053963 8.98953097 8.824435673 9.149475386 9.124376191 8.949086497 9.134413984 8.903831495 8.382599094 159184206 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.406746379 8.527255211 8.061489454 8.689534793 8.595118155 8.620043157 8.212319214 8.837081772 8.428409538 8.414840623 8.67164098 8.500944931 169781046 ara_fungi Carbon cycling Carbon degradation Hemicellulose Aspergillus oryzae RIB40 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus oryzae; 10.42640407 10.26588377 9.33558684 9.434985983 8.92291782 9.251205544 9.880459617 167617444 sigma_70 Stress Sigma factors Burkholderia thailandensis Bt4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 8.852077561 8.991368773 9.125917194 8.637224097 8.776772933 8.697412572 8.687094898 8.592549403 8.943582268 8.600220879 8.735938153 8.635563956 89338843 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Mycobacterium flavescens PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 10.61073591 10.528733 10.56340572 9.801457341 9.922284704 9.763262212 10.12090688 9.895417046 10.60722894 10.22505544 10.29649687 10.31739273 29607727 pstS Stress Phosphate limitation Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 8.214575507 8.367044179 8.155768851 8.376753176 8.878996685 9.240841563 8.543645344 9.138242099 8.638106678 8.54028805 8.908365038 227421462 AceB Carbon cycling Carbon degradation others Desulfohalobium retbaense DSM 5692 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium;species:Desulfohalobium retbaense; 8.161555072 7.970990399 8.05095261 7.978929546 7.952548933 7.730015801 7.789806515 8.215528526 23123607 cadBD Metal Resistance Cadmium Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 11.29101761 10.46943302 10.21445488 11.17227591 10.72365887 11.2140145 10.72815592 10.82717909 11.46254751 11.20842701 11.15621727 11.31937708 169609725 Catechol Organic Remediation Aromatics Other aromatics Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 8.343186944 8.341746798 8.360118444 8.173284257 7.956217939 7.840094588 8.05222498 8.280101051 8.236511192 8.220260421 7.722293216 7.859184105 40809648 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira; 8.945710064 9.12665875 8.859669396 8.914517785 8.957421898 9.233012238 8.884180781 9.420658115 9.298507428 9.425742399 8.715444464 39956518 ara_fungi Carbon cycling Carbon degradation Hemicellulose Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 8.455826076 8.290710538 8.457462142 7.737209405 7.836669958 7.589278628 7.622818521 7.947706825 8.312016517 8.014329718 7.790842244 7.962037458 214029918 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8.550185364 8.626358967 8.631205489 8.364396469 8.158480038 8.48613383 8.646455362 8.728379388 8.607999259 8.61612477 8.733636025 8.832506265 218780282 atzA Organic Remediation Herbicides related compound Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 8.982526888 8.960796124 8.521205483 7.901818396 7.759588675 7.925549736 8.053779301 8.204423277 8.231409827 8.014995355 7.941666318 8.415300571 229492512 ureC Nitrogen Ammonification Rhodococcus erythropolis SK121 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 8.502350212 8.55663873 8.713022067 8.100495506 7.936426082 8.157690607 7.999325997 7.596696213 8.168173141 7.873754176 7.784398735 8.26349453 158138839 narG Nitrogen Denitrification uncultured bacterium 8.391472997 8.458861587 8.718406249 8.195390769 7.92934747 8.019761193 7.775662216 7.876786282 7.754198048 7.765438712 7.728046503 7.906668546 261891172 endochitinase Carbon cycling Carbon degradation Chitin Vibrio mimicus MB-451 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 9.540813815 9.501309036 9.572577601 9.248146146 9.008221776 8.77033947 8.795689778 8.772960882 8.550839412 8.912448459 8.799883426 9.265529738 115372678 sigma_32 Stress Sigma factors Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 9.202549766 9.020164447 9.047067679 9.094836711 9.056593677 9.095940427 9.211611379 9.138835641 9.436399743 9.710779417 9.280363368 9.474430631 37956521 gyrB other category gyrB Pelobacter propionicus superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter; 8.305687712 8.053158683 8.043383456 8.210534162 8.24867604 8.290369224 7.713026069 8.350625863 7.968099827 7.913118945 8.168416742 7.853360103 229311572 SMR_antibiotics Antibiotic resistance transporter Listeria grayi DSM 20601 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria grayi; 9.633425319 9.447808689 9.718791322 8.852730616 8.877913855 8.835782082 8.918284418 8.434146393 8.707173866 8.796232946 8.80688018 9.206331201 118711202 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Burkholderia cenocepacia MC0-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 10.88797624 10.831585 10.85785212 11.01475457 10.84007015 10.56411011 10.8934534 10.81407354 10.97906516 10.9108682 10.58872306 10.84611132 228567963 pstA Stress Phosphate limitation Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 8.582787317 8.5718769 8.666416541 8.393734603 8.179495916 8.282575163 8.107185066 8.188772368 8.257595735 8.152599038 8.066585569 8.254237691 16082553 ferredoxin_oxidoreductase Bioleaching Electron transport Thermoplasma acidophilum;Thermoplasma acidophilum DSM 1728 8.956296226 8.854907758 8.742901522 8.085288283 8.215421395 8.636712999 8.904133047 8.60072266 8.72634528 8.580297455 8.887970805 8.700254651 91780890 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.254029472 8.121982708 8.412652177 7.961947582 8.011731766 7.881717006 7.688599044 8.189126381 8.18283092 8.049567091 8.113297968 8.34238449 115282430 ChrA Metal Resistance Chromium Burkholderia cepacia AMMD superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 7.917749104 8.081852495 7.918946669 8.365873871 8.302584859 8.607031122 8.495380714 8.398422685 167071030 SMR_antibiotics Antibiotic resistance transporter Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.271089352 8.262722556 8.304142746 8.367043371 8.379218041 7.758423027 8.141764043 118003463 nmoA Organic Remediation Aromatics Nitoaromatics Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.649838888 8.683275526 8.367255053 8.395705973 8.564514581 8.146051172 8.760335293 8.427883168 8.451581347 8.319391819 8.54793255 8.3131042 69938258 nosZ Nitrogen Denitrification Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.532482163 8.387031222 8.110592921 6.860520558 7.880126126 8.302567087 7.245924014 8.295477537 7.82734731 7.844298848 7.588947451 88062457 dsrB Sulphur sulfite reductase uncultured Desulfohalobiaceae bacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae; 9.231775269 9.141606509 9.147718591 9.099266805 9.126660615 8.824803303 9.300133262 9.173544145 9.169792492 9.470252335 9.585699132 9.040295222 87283417 hrcA Stress Heat shock Synechococcus sp. WH 5701 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 9.38061354 9.293654273 9.529048426 8.820953323 8.833158058 8.860213527 9.037826385 8.658850275 9.039181129 8.802117559 8.734979279 8.931932953 77456427 fnr Stress Oxygen stress Pseudomonas fluorescens Pf0-1 9.11645029 8.971054023 9.154266431 8.750790108 8.600940281 8.635049716 8.215459994 8.456370205 8.394774529 8.523522952 8.474162466 8.641625126 74316856 sigma_38 Stress Sigma factors Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 9.582817225 9.0663827 9.03262336 9.674168923 9.439860205 9.34923729 9.825104052 9.640822941 9.558845237 9.567062782 9.517745131 9.175508056 149142173 gyrB other category gyrB Roseovarius sp. TM1035 8.763110011 8.704439547 8.472877899 7.460253524 7.78755678 8.415031069 8.397697806 7.680982259 8.541624038 7.742435808 7.940922176 7.971503798 89045827 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Oceanicola granulosus HTCC2516 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 9.04968887 9.168818112 8.733496942 8.453057418 8.359374484 8.722580677 9.029588626 8.633609916 8.853483037 8.548584827 8.595712508 8.798772869 222106869 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 8.730847426 8.73454173 8.840859046 8.513920089 8.670193576 8.535828158 8.510493548 8.907382047 8.481500477 8.768127373 8.833577142 8.756404062 194552345 pcc Carbon cycling Carbon fixation Pseudomonas aeruginosa 2192 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.378958951 8.498125939 8.234334438 7.842092998 8.296364315 8.530223278 7.382139299 8.53424754 7.629071924 7.362969953 7.437465973 149812984 pstB Stress Phosphate limitation Roseobacter sp. AzwK-3b 8.866217302 8.9109747 8.476188046 8.261267135 8.244674346 8.480337416 8.328946353 8.118021203 8.288328925 8.18427312 8.376126749 8.363943769 87303418 todF Organic Remediation Others Synechococcus sp. WH 5701 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 9.638341884 9.38134184 9.560569896 9.605326592 9.429461668 9.143087185 9.655311647 9.45951237 9.25114413 9.36390153 9.277859055 9.271170018 77543705 gyrB other category gyrB Pelobacter carbinolicus DSM 2380 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter carbinolicus; 9.13989756 9.202096674 9.437738193 8.86445545 8.795581442 8.617361908 8.737338353 8.80700474 8.563280042 8.863850778 8.78866653 8.968643237 222081773 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.743375222 8.653366487 8.579075161 7.865530989 8.452871029 8.802275274 7.980277594 8.685770757 8.111754884 8.315123916 7.898955665 66769441 katE Stress Oxygen stress Xanthomonas campestris pv. campestris str. 8004 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 9.696840561 9.781095478 9.586378897 9.863368583 9.598867007 9.6337747 9.903231461 9.765872095 9.488745537 9.595666864 9.865723659 9.413160677 40746774 phenol_oxidase Carbon cycling Carbon degradation Lignin Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 8.175224969 8.20599806 8.073166066 7.985584948 7.99465371 8.034308953 7.946431247 8.099061235 7.886425032 7.944219105 7.701826714 218718280 AceA Carbon cycling Carbon degradation others Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 8.483308686 8.415452279 8.366794924 8.311662062 7.948321798 7.908990607 7.935184473 8.392506859 8.088283117 8.208717264 8.52420514 8.504869536 90954613 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.744866565 8.742237644 8.674498661 8.004350246 7.972280477 8.060427493 7.9444313 8.054808046 8.461292496 8.287219704 8.499316718 8.415494444 254485596 MFS_antibiotic Antibiotic resistance transporter Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.301891677 8.269367168 8.08522531 8.443295483 8.344632412 8.396091049 8.443712466 8.463139006 8.564712512 146194956 fnr Stress Oxygen stress Bradyrhizobium sp. ORS278 9.105063433 9.079751458 8.868712839 8.782606545 8.353590097 8.55405877 8.300406814 8.419253601 8.45511958 8.483396261 8.612083123 8.791470309 239908499 fnr Stress Oxygen stress Desulfovibrio magneticus RS-1 10.05802413 9.845686179 9.68421986 9.359453529 9.321899533 9.245402503 9.619895313 9.429048058 9.232721065 9.365130038 9.484721193 9.296389631 68008900 pulA Carbon cycling Carbon degradation Starch Exiguobacterium sibiricum 255-15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 8.393378184 8.231719824 8.495404767 7.821349001 7.775305491 7.842332195 7.757228684 7.498189459 7.919797154 220921200 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 8.79399911 8.890365069 8.641807112 8.243088553 7.930570899 8.112874374 8.604277804 8.021501877 8.904927346 8.018281563 8.151677987 7.919099694 226319253 obgE Stress Radiation stress Deinococcus deserti VCD115 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 9.929068985 9.822735398 9.840667604 8.915159842 8.911540554 8.831220765 8.876933167 8.695187104 8.875022761 8.979800006 8.910079558 9.109970085 209527701 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira maxima; 8.946399082 8.869487997 9.16640338 8.472152568 8.220212082 8.193612289 8.012579456 8.015673106 8.242299947 8.219618873 8.428834163 8.557758856 160364762 MFS_antibiotic Antibiotic resistance transporter Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.891030081 8.807549512 8.602602213 8.477463377 8.904983065 8.963526624 8.622526176 8.980805849 8.617605513 8.644465251 8.771068386 8.68470321 71848619 ChrA Metal Resistance Chromium Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 8.160817112 8.364058553 8.455368101 8.29885943 7.933316406 8.392313976 8.243603348 8.028404265 8.141676479 8.019836691 7.627665875 44733 nifH Nitrogen Nitrogen fixation Methanococcus voltae superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanococcaceae;genus:Methanococcus; 7.527705893 7.377695473 7.166536065 7.429661356 7.053420585 7.613553207 7.366441065 7.258596925 7.39617315 84712443 nasA Nitrogen Assimilatory N reduction Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8.244668727 8.178846986 7.635082375 7.498546873 7.553618668 7.08879551 7.098990424 7.915586998 7.320397901 7.419757035 7.37117567 229870101 B_lactamase_C Antibiotic resistance Beta-lactamases Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 9.678187836 9.252411108 9.291197454 9.194259377 9.266247131 8.944038605 8.901696493 9.202415012 8.906295239 9.122880449 9.12754726 9.478531527 224825214 sigma_24 Stress Sigma factors Lutiella nitroferrum 2002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Lutiella;species:Lutiella nitroferrum; 8.205073556 8.528445122 7.889478527 7.812802726 8.122633967 8.26085831 7.682808887 8.380356966 7.93937367 8.178031043 8.058070176 116098750 sigma_70 Stress Sigma factors Lactobacillus brevis ATCC 367 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus brevis; 8.724546611 8.665008777 8.356085251 8.311991937 8.299042958 8.326571509 8.413160607 8.609188832 8.649517309 8.358736349 8.63776314 281406259 sigma_24 Stress Sigma factors Prevotella copri DSM 18205 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella copri; 8.418884721 8.589441632 8.672862046 7.869408879 7.876957736 7.752742863 7.771406852 7.592038849 7.796207438 7.746430166 7.545373992 7.918434482 229877566 phoB Stress Phosphate limitation Sphaerobacter thermophilus DSM 20745 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 8.486204033 8.695888592 8.472196452 7.865361412 7.805557492 8.016249343 8.108327475 7.580371656 8.092349106 7.918796466 7.936704156 7.990609596 224603441 fnr Stress Oxygen stress Lutiella nitroferrum 2002 9.426741268 9.279918231 9.489405631 8.884443392 8.84137138 8.707077494 8.413188664 8.553111075 8.526402101 8.744490981 8.768722965 8.980296682 85711339 MFS_antibiotic Antibiotic resistance transporter Idiomarina baltica OS145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina baltica; 9.484438776 9.53544916 9.554857934 9.04329943 8.732558222 9.148002103 8.94241777 8.53721397 8.955925643 9.104493704 9.353068808 167946095 hrcA Stress Heat shock Endoriftia persephone 'Hot96_1+Hot96_2' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Endoriftia;species:Endoriftia persephone; 8.824720457 9.034365972 8.538910942 8.602009937 8.554517669 8.349156155 9.066690044 8.406594626 8.32217225 8.391123265 110169106 glnA Stress Nitrogen limitation Trichodesmium erythraeum IMS101 8.200142203 8.469994338 7.97036967 8.121261538 7.737478716 7.970028911 7.837356148 7.813808673 7.757483268 7.783032097 118028683 CadA Metal Resistance Cadmium Burkholderia phymatum STM815 8.410636144 8.519272798 7.85925603 7.846898369 7.945820653 8.069328309 7.284731319 8.489010465 7.777973189 7.601913126 7.832831018 56542754 silC Metal Resistance Silver Zymomonas mobilis subsp. mobilis ZM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Zymomonas;species:Zymomonas mobilis; 8.221964075 7.858801348 8.151409857 7.761559027 7.356037907 7.373935148 7.44540396 7.284028224 7.905702551 7.412861471 7.294800914 7.156135049 171691576 phenol_oxidase Carbon cycling Carbon degradation Lignin Podospora anserina superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 9.266539243 8.738670567 8.956131072 8.167724536 8.115850974 8.128512732 8.023985433 8.05849421 8.141420481 8.14214757 8.047500194 8.452324575 111116464 xylG Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 10.38658865 9.997180896 9.978525686 10.660933 10.44944183 10.09809507 10.44244493 10.38881692 10.33874723 10.15362288 10.22187656 9.775701782 111223613 tfdA Organic Remediation Aromatics Chlorinated aromatics Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 8.415507794 8.820130148 8.520835693 8.629872312 7.980060829 8.255563313 8.750277275 8.137870575 8.512603724 8.060446719 8.074162552 8.213177239 6946705 gyrB other category gyrB Rikenella microfusus superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Rikenella; 8.405864248 8.101930621 8.364567982 7.828075001 7.867329875 7.912828749 8.095121445 8.472477302 8.505881738 8.097036129 8.179265076 254575128 type_III_secretion virulence secretion Pantoea stewartii subsp. stewartii DC283 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea stewartii; 9.357776191 9.519480016 9.228745388 8.9747907 8.80308561 8.522246266 9.262092267 9.039356524 8.82247622 9.220373763 8.925304013 15895509 ZntA Metal Resistance Zinc Clostridium acetobutylicum ATCC 824 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium acetobutylicum; 7.009753436 7.028061801 94265724 nrfA Nitrogen Dissimilatory N reduction delta proteobacterium MLMS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 10.08391556 9.859390195 10.00976035 9.39654095 9.314707863 9.220535115 9.158618212 8.932783166 9.157012665 9.113770536 9.182729807 9.512818724 77460699 PobA Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens PfO-1 8.783146956 8.758006424 8.926642545 8.576300328 8.659305248 8.437351067 8.60217807 8.916934892 8.523268935 8.848307866 8.803476506 8.771657067 118431400 narJ Stress Oxygen limitation Aeropyrum pernix K1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Aeropyrum;species:Aeropyrum pernix; 8.652145712 8.760893538 8.085111304 7.765890534 7.559123855 7.517263493 7.702400207 7.825516875 7.907709354 7.936173669 84042971 Catechol Organic Remediation Aromatics Other aromatics uncultured bacterium 8.902557032 8.635185605 8.3379982 8.899751352 8.874612508 8.420802348 8.75213749 8.646615304 8.643493545 8.581285797 8.48512203 8.241488073 269965147 oxyR Stress Oxygen stress Vibrio alginolyticus 40B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 8.016604208 7.794884457 8.280569679 6.976750433 7.283951308 7.013931645 6.998368798 7.183492856 256685013 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Jonesia denitrificans DSM 20603 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 8.74617988 8.809160413 8.557234673 9.094118207 8.996825712 8.690040957 8.358025584 8.484419908 283438128 sigma_24 Stress Sigma factors Pirellula staleyi DSM 6068 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Pirellula;species:Pirellula staleyi; 8.646597555 8.599199543 8.539652582 8.579686974 8.514687541 8.167455486 8.352795086 8.368445186 8.400583153 8.312064249 8.551195414 8.132114974 225873502 sigma_24 Stress Sigma factors Acidobacterium capsulatum ATCC 51196 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteria;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 9.08565672 9.07403131 8.942521746 8.372190698 8.088200262 8.323052566 8.671326577 7.88102046 8.824298935 8.465520544 8.51076614 8.156694524 169832337 dsrA Sulphur sulfite reductase Candidatus Desulforudis audaxviator MP104C 8.529320213 8.642997069 8.694792324 8.564978027 8.498273466 8.417876052 8.383291851 8.56522395 8.599571995 78220484 tutFDG Organic Remediation Aromatics BTEX and related aromatics Desulfovibrio desulfuricans G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 8.424193113 8.129866429 8.030108046 8.036625234 7.793742906 7.592938499 7.836078334 8.367245449 7.665954267 7.789576208 7.781449861 148262924 fnr Stress Oxygen stress Geobacter uraniireducens Rf4 8.63822412 8.834449401 7.866896226 7.944621521 8.159492589 8.269273737 7.365611498 7.935450548 7.987256992 8.299646966 260610791 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio metschnikovii; 8.848654306 8.816440175 8.747171081 8.722575853 8.374425706 8.385697474 8.166269432 8.160563592 8.274289864 8.255183327 8.357807689 8.512907746 256668779 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.239439506 8.262548246 8.311990342 7.586948552 7.77657265 8.001605283 7.792456386 7.613097345 8.216220033 7.584250434 7.804423345 7.79540743 89056654 Catechol Organic Remediation Aromatics Other aromatics Jannaschia sp. CCS1 8.67109534 8.459670605 8.540184827 7.966756696 7.922239322 8.209137141 8.424858355 8.367687521 8.479878298 8.077690723 8.207424068 8.105857576 53804189 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 8.355309367 8.345107029 8.393269319 8.079364255 8.087048615 7.841996189 7.495441102 7.889278193 8.054978296 8.045870795 7.801573465 8.09053305 88855974 czcD Metal Resistance "Cadmium,Cobalt,Zinc" marine actinobacterium PHSC20C1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 8.576489809 8.584836205 8.510043125 8.009920973 7.861292384 7.815140245 8.070983304 7.825464636 8.302481614 7.695640935 7.508023509 7.727135873 41058919 ChnE Organic Remediation Other Hydrocarbons Brachymonas petroleovorans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Brachymonas; 9.393499245 9.265242851 9.391372485 8.757417684 8.944969245 9.11302298 9.503892654 9.029259329 9.65719783 9.356186605 9.490983957 9.467109389 241853608 Tet Antibiotic resistance other Ixodes scapularis superkingdom:Eukaryota;kingdom:Metazoa;phylum:Arthropoda;class:Arachnida;order:Ixodida;family:Ixodidae;genus:Ixodes; 8.970892922 8.584564627 8.772473394 9.011459986 8.823393687 8.475751028 8.536225913 8.908366207 8.384060317 113901546 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 9.047414771 9.150867121 9.280715071 8.377866311 8.744620011 8.996814507 9.358042441 8.563086223 9.620364166 8.389162108 8.556330401 8.724094392 83941439 glnA Stress Nitrogen limitation Sulfitobacter sp. EE-36 8.663887218 8.868195061 8.252621623 7.748312863 7.429150283 8.089391941 8.326177975 7.929733693 8.400081236 7.523395958 7.682235867 7.896335386 162148509 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 7.713968765 7.583130653 7.537431801 7.283579305 7.435989054 7.647095402 7.487088663 7.214053954 7.730532889 153798928 hrcA Stress Heat shock Actinomyces odontolyticus ATCC 17982 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces odontolyticus; 9.45914462 9.395957935 9.423598683 8.906172961 8.812831054 9.157334997 8.863042994 8.551224156 8.648422837 8.918726924 9.075674434 262395580 pilin virulence pilin Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.388442205 8.261440715 8.235898522 7.536136594 7.360999334 7.566093431 7.032624033 7.630053326 7.304371702 7.409785424 7.534255364 241204392 katE Stress Oxygen stress Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 10.66844716 10.44630356 10.39835379 9.931277097 9.974392293 9.928103454 10.21622367 9.931359788 10.1701219 10.18741331 10.39743233 10.05710851 76167188 CopA Metal Resistance Copper Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 8.699419193 8.582294461 8.496668629 7.87489687 7.991260512 8.052973491 7.942873639 7.798385444 8.224830041 7.765979285 7.736631843 8.020066104 114538491 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 9.34315777 9.322416965 9.578617708 8.657426964 8.606190257 8.560602152 8.340077587 8.366827062 8.406526636 8.553987686 8.441534698 8.835333102 78514929 phtA Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.220945221 8.376144052 8.399479312 8.293177933 8.07285456 8.296774933 8.191518227 8.100776305 8.262879781 8.066547155 7.67766237 283441526 srt virulence surface protein Gardnerella vaginalis 409-05 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Gardnerella;species:Gardnerella vaginalis; 8.82411943 8.64355396 8.853924624 8.899152318 8.962693048 8.809047071 9.38470883 8.972578198 9.136923863 9.063148196 9.24540686 8.928913014 196480517 TerC Metal Resistance Tellurium Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 8.741705055 8.515209673 8.266348831 8.502145796 8.384496794 8.524645483 8.107032652 8.442838408 8.394052255 8.419680639 8.405552155 8.176097111 154687840 narJ Stress Oxygen limitation Bacillus amyloliquefaciens FZB42 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 8.000228461 7.945258298 8.131033644 7.745803582 7.470744014 7.317763321 7.317377136 7.232725913 7.769078652 7.462764096 7.622387578 7.457024987 1314850 katE Stress Oxygen stress Rhizobium sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 8.646035495 8.701849534 8.922322244 8.737266596 8.587741837 8.499518828 8.437501126 8.956213489 8.732400812 8.665673087 8.482090055 8.745673208 13249523 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 10.42667316 10.33695429 10.30050806 10.6608017 10.64979892 10.48778711 10.3962098 10.7458099 10.42053137 10.61372054 10.74943649 10.15102829 255923678 sigma_24 Stress Sigma factors Actinosynnema mirum DSM 43827 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinosynnemataceae;genus:Actinosynnema;species:Actinosynnema mirum; 8.02427266 8.266062514 7.256060375 7.448236187 6.877821819 6.713955897 7.511573297 7.278538272 7.544382692 225172788 APS_AprB Sulphur adenylylsulfate reductase Desulfonatronospira thiodismutans ASO3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfonatronospira;species:Desulfonatronospira thiodismutans; 7.830900493 7.531336877 7.357008995 7.932001708 8.087505289 7.997463072 7.983841252 7.899644875 54026346 TerC Metal Resistance Tellurium Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 8.929311857 9.441983777 9.013964625 8.444505292 8.568006297 9.171192425 9.506863724 9.060898454 9.131277399 8.62266924 8.845745418 8.794150828 220915456 ahpC Stress Oxygen stress Anaeromyxobacter dehalogenans 2CP-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 8.389214216 8.541270277 8.802170274 8.49484706 8.520801873 8.469534515 8.487090522 8.935889993 8.777863189 9.057733539 8.86242006 8.912582949 110645040 arsenic_resistance_gene Bioleaching Metal Resistance Acidithiobacillus caldus 8.068383053 8.077175975 7.446738113 7.835295916 7.551655319 7.391434244 7.662996648 7.763991489 8.160003489 7.829093499 7.623056074 192293620 pstB Stress Phosphate limitation Rhodopseudomonas palustris TIE-1 8.503962264 8.896662951 8.78009089 8.314384115 8.138542269 8.284868972 8.594435535 8.291834633 8.40214578 8.328725367 7.989149177 8.425910221 10175298 AceA Carbon cycling Carbon degradation others Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 9.007987985 8.876184965 8.964733931 8.533464683 8.503014804 8.577053583 8.279443028 8.803418878 8.604520667 8.749543126 8.566387426 8.628851153 99083341 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.272731556 8.30571924 8.138572937 7.8438625 7.823574065 7.770266896 7.70793409 7.567864217 7.990712718 7.699040531 7.763256177 7.708117856 23016152 MFS_antibiotic Antibiotic resistance transporter Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 8.989256707 8.563167875 9.007644974 8.130352162 8.110677093 8.280589626 8.298721739 8.274081904 8.738141154 8.392385269 8.53980302 8.32359752 27314522 CopA Metal Resistance Copper Staphylococcus epidermidis ATCC 12228 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus epidermidis; 9.262245694 8.96984304 9.304616146 8.503988756 8.180996765 8.307184971 8.026943162 7.786212831 8.337028333 8.101851855 8.185912514 8.601067778 206592483 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia solanacearum IPO1609 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 8.832311008 8.888176113 8.871078252 7.946584419 8.628403549 8.797339133 9.047937436 7.898448435 9.048668812 8.533913366 8.493436512 8.379386383 198443494 B_lactamase_C Antibiotic resistance Beta-lactamases uncultured bacterium superkingdom:Bacteria; 8.402420849 8.683189666 8.641719721 8.717830296 8.533537405 8.528771495 8.187172993 8.659284588 68160312 dxnA Organic Remediation Aromatics Heterocyclic aromatics Janibacter sp. XJ-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 8.614753799 8.646200265 8.866091621 8.141421382 8.104258112 8.107980149 8.080808639 8.123475822 8.493603193 8.141145621 8.028656633 8.279647101 269144127 fnr Stress Oxygen stress Brevundimonas subvibrioides ATCC 15264 9.102929548 9.349452839 8.690698456 8.356099905 8.128381714 8.660681552 9.129893281 8.632777961 8.785035082 8.481306402 8.782798995 8.446970455 150030040 CadA Metal Resistance Cadmium Sinorhizobium medicae WSM419 8.67922595 8.553778009 8.820113117 8.275240913 8.292903803 8.123215737 8.17584966 8.383290632 8.361084604 8.314459222 8.35018416 8.307927248 71082703 phtA Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus coprophilus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.677317226 9.062665573 8.263461067 8.047037998 7.635522268 8.569155497 8.816978457 8.428539292 8.515222204 8.285854217 8.418228129 8.224417834 89512254 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 9.555856088 9.586178111 9.571982021 9.163842154 9.236761184 9.240603908 9.412348949 9.505552446 9.219482174 9.359388967 9.475582012 9.371981701 260663064 pstB Stress Phosphate limitation Lactobacillus fermentum 28-3-CHN 8.991426092 9.135756116 9.224931605 8.642061367 8.085212522 8.115930405 8.366566572 8.996875843 9.407221615 8.794673938 196224572 CadA Metal Resistance Cadmium Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 8.532186646 8.596694091 8.674089772 8.737789742 8.295749094 8.127286224 8.249228958 8.463003329 8.723625191 8.234736021 8.03242712 8.173067463 77963046 amyA Carbon cycling Carbon degradation Starch Yersinia mollaretii ATCC 43969 9.261199435 9.643036586 8.471330796 7.912149362 8.381234419 8.811980639 8.503645551 192811182 xylA Carbon cycling Carbon degradation Hemicellulose Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.397017557 8.343227328 8.139024523 8.093099177 7.818628982 7.664149922 8.112091581 8.351845479 8.227920685 8.114550283 8.19826838 60476281 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 8.049518261 8.145175433 7.362493954 7.138515179 7.340380931 6.814143834 6.855008542 7.665241268 6.927011745 6.893109763 7.247059818 46519947 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9.032533972 8.94848484 8.991964003 8.680049401 8.989958686 8.561403562 8.546265345 8.543159644 8.758718417 9.028096113 8.793671705 109660127 ureC Nitrogen Ammonification unidentified bacterial contaminant superkingdom:Bacteria; 7.444084157 7.863292239 7.784962847 7.990257164 7.593718328 7.932612896 7.911578836 8.066927734 7.847223403 161784925 glnA Stress Nitrogen limitation Gluconacetobacter diazotrophicus PAl 5 9.056038208 9.327532046 9.376148172 8.48395999 8.693724922 9.183864608 9.621386581 9.248422863 9.769811125 8.950979392 9.060521054 8.986786862 156742920 sigma_70 Stress Sigma factors Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 8.957232273 9.226425694 8.686159345 8.249147059 8.229873529 8.188124502 8.593729748 8.437725566 8.294279458 8.327301619 8.395694264 8.219338088 121998184 AceA Carbon cycling Carbon degradation others Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 9.651092767 9.645997578 9.630714756 9.131186014 8.940364938 9.020705615 8.909608339 8.682189405 8.947664779 9.097044771 8.959647697 9.277509822 62944556 gyrB other category gyrB Zymomonas mobilis subsp. pomaceae superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Zymomonas;species:Zymomonas mobilis; 9.406029528 9.323129466 9.437527892 8.905396198 8.977460471 8.618293367 8.346120138 8.493319121 8.466029931 8.472125599 8.608500571 9.01461849 90 CODH Carbon cycling Carbon fixation 7.567202345 7.786638227 7.628304776 7.462070535 7.886031816 7.746064221 8.037359532 8.143837736 7.985012697 89082466 CopA Metal Resistance Copper Oceanospirillum sp. MED92 9.182577813 9.322667612 9.394944318 9.830486651 9.89291492 9.926050063 9.671845583 10.16064248 9.598721035 10.0832279 10.23571169 9.697099481 32446878 linB Organic Remediation Pesticides related compound Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 8.14727363 7.814407482 8.072823193 8.09875542 8.321672607 8.025636154 8.204803989 8.185827907 7.796310517 7.429495819 7.754205137 7.505008102 194307675 gyrB other category gyrB Pelodictyon phaeoclathratiforme BU-1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 8.184650084 8.137016746 8.169501727 8.220199767 7.95727689 7.756276057 8.199562366 7.878620805 8.304856399 7.859173332 8.1470512 39647906 phtA Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.341550617 8.196750706 8.35702485 8.062042811 7.83194411 8.057004396 8.023930724 7.910866626 8.402327378 7.823401709 8.025648893 7.745495172 68229976 pcc Carbon cycling Carbon fixation Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 9.707277749 9.907232311 9.845769203 9.048036038 9.041089642 9.219744138 9.867594652 9.310161785 9.905428568 9.07132377 9.002928263 9.229258367 223586133 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.789914466 9.578113651 9.453082621 9.190571231 8.989331225 9.102363091 9.516941304 9.151261583 9.607996187 9.1613516 9.186175846 9.024195706 94309706 phn Organic Remediation Herbicides related compound Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.399729531 8.868654805 7.95398956 8.160029673 7.933116464 8.432042796 7.997090145 7.869587216 8.002753102 7.995471311 82702867 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Nitrosospira multiformis ATCC 25196 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira;species:Nitrosospira multiformis; 8.634713227 8.812439837 8.417412393 8.925052465 8.743249369 8.550794146 9.041770859 8.913418975 8.668750141 8.822794559 8.804779279 8.751603399 56178727 AceA Carbon cycling Carbon degradation others Idiomarina loihiensis L2TR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina loihiensis; 8.695647793 8.333640793 8.252380974 8.480479581 8.337324902 8.280032793 8.322042629 8.122962638 8.131009992 40362783 nosZ Nitrogen Denitrification uncultured soil bacterium superkingdom:Bacteria; 8.470915401 8.001772351 8.58811257 8.32597075 7.849746224 8.473115172 8.280799274 8.037109237 8.031879535 7.913629058 116252926 ChrA Metal Resistance Chromium Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.546230738 7.346441736 7.255418944 7.415212189 7.592405073 7.698502326 7.647259528 7.82712101 7.470030638 83837111 obgE Stress Radiation stress Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 8.125364626 8.296380498 8.164982034 7.909708482 7.864821413 8.19076599 8.262912331 8.174460606 8.586341613 8.268484391 8.582558698 8.50681921 261418476 hrcA Stress Heat shock Geobacillus sp. Y412MC61 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.938544954 9.181506376 8.968386732 8.823228128 8.75872431 8.555678055 8.536282323 8.748312659 8.716620281 8.723705364 8.795003939 8.597777481 119355143 rubisco Carbon cycling Carbon fixation Chlorobium phaeobacteroides DSM 266 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 7.225721615 6.966139443 78515664 ChrA Metal Resistance Chromium Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 11.23344662 10.82887836 10.78267507 10.10017196 9.692037869 10.17526787 10.69105974 10.17583361 10.49871475 10.44665452 10.34829265 10.02025116 254968988 pstC Stress Phosphate limitation Acidithiobacillus caldus ATCC 51756 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 7.7687317 7.617178716 7.133209313 7.410198192 7.41099045 7.191882791 7.68422544 55229573 TehB Metal Resistance Tellurium Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 8.074842917 8.487964816 8.42441548 7.71193291 7.733928888 8.155311636 8.415748639 7.870635356 8.448062988 8.002164241 7.971459361 8.089950103 116249151 nahF Organic Remediation Aromatics Polycyclic aromatics Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.139862645 8.108805133 7.636968415 7.545545752 7.55771973 7.734114485 7.347658137 7.372492912 7.561955172 7.469949588 218278937 mer Metal Resistance Mercury Roseburia intestinalis L1-82 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia intestinalis; 7.653476128 7.842835599 7.771651502 7.431674206 8.079564959 7.936507402 7.67605675 8.16662999 7.87357715 27529221 amoA Nitrogen Nitrification superkingdom:Bacteria; 9.907532051 9.548742538 9.725464429 9.007065064 9.010899465 8.957696356 9.357634124 8.568541169 9.537585419 9.144278369 9.20942012 9.287214389 212703795 CopA Metal Resistance Copper Desulfovibrio piger ATCC 29098 8.57023477 8.29993841 8.170446089 8.534104665 8.195752646 8.441309507 8.519874481 8.381292235 8.344134588 8.212282492 8.331159323 8.022921446 156072052 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 8.608150534 8.639341174 8.406497071 8.554447781 8.711609665 8.324687778 8.77889267 8.557644756 8.351783266 8.418066383 8.421350745 7.980595154 146403046 biotin_carboxylase Bioleaching Carbon fixation Acidiphilium cryptum JF-5 9.865160233 9.068958196 8.605174071 10.2979529 10.07504658 9.963492401 9.726133561 9.953986411 9.544421366 9.695308728 9.793158378 9.07572062 255333820 sigma_24 Stress Sigma factors Hyphomicrobium denitrificans ATCC 51888 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 8.136956698 7.768665282 7.674584441 7.53685478 7.94212277 6.810023462 7.126024886 7.267938424 8.112766253 213952386 sigma_24 Stress Sigma factors Corynebacterium amycolatum SK46 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium amycolatum; 8.968517618 8.835222499 9.103262687 8.472488946 8.421319775 8.439864549 8.251217448 8.382421025 8.368726997 8.42087782 8.608136936 8.706608509 226227774 pstB Stress Phosphate limitation Gemmatimonas aurantiaca T-27 8.930336191 9.120801267 8.87294112 8.27743132 8.610703049 8.92391676 9.070368608 8.853367317 9.167405543 8.711083473 8.690651401 8.613452525 260404427 ahpC Stress Oxygen stress Dialister invisus DSM 15470 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Dialister;species:Dialister invisus; 9.099495221 8.829310787 9.063487094 8.157247874 8.21380576 8.174586077 8.463051333 8.269136344 8.502727767 8.345110597 8.579431242 8.565838815 66801977 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 9.802177942 9.699426438 10.00092965 9.435937774 9.390307158 9.184182712 9.652525832 9.427027162 9.464571116 9.580558326 9.673973971 9.681750031 269129957 grpE Stress Heat shock Slackia exigua ATCC 700122 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Slackia;species:Slackia exigua; 9.742007471 9.624856498 9.306629805 9.229846711 9.298177061 9.317668499 9.138115889 9.108611017 9.416075342 9.371281523 9.6428178 9.444266789 163794811 pstB Stress Phosphate limitation alpha proteobacterium BAL199 8.221012483 7.781367287 8.038189495 7.88926287 7.606307685 7.623904766 7.912615717 7.523225608 7.87990393 7.564433519 7.34540173 158138830 narG Nitrogen Denitrification uncultured bacterium 9.275659646 8.97314186 8.722727715 8.762159692 8.50459646 8.280655704 8.610404256 8.655869804 8.76856996 8.364373886 8.427542536 8.288017165 78042652 nrfA Nitrogen Dissimilatory N reduction Carboxydothermus hydrogenoformans Z-2901 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Carboxydothermus;species:Carboxydothermus hydrogenoformans; 8.851359918 8.368960588 8.303374575 8.978091782 8.745080531 8.46613946 8.614835346 8.685893046 8.260159959 8.23359122 8.346376889 8.50121239 23491973 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 8.870307932 8.81435417 8.766798234 9.135218054 9.270496229 8.961979085 8.539598427 9.170158842 8.79259042 9.026371615 9.001120783 8.384060218 115399028 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 9.486264914 9.731632478 9.42641072 9.669137585 9.981801575 9.616083096 10.15746874 9.786328034 9.702867112 9.596101982 9.814997475 9.550983686 108461047 glnA Stress Nitrogen limitation Myxococcus xanthus DK 1622 9.085947368 9.156897359 9.048009351 9.012519481 9.285533618 9.304769568 9.23701075 9.523286295 9.242935747 9.281601588 9.474466741 9.442699612 73541250 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.205526525 8.091715512 8.938204681 8.758387061 8.50007186 8.227535366 8.403168213 8.717363291 8.206697459 8.642627715 8.438346965 8.405963593 90424355 iro virulence Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.905313687 8.684528022 8.526049633 8.885936342 8.655959613 8.491770215 8.551303521 8.92836792 9.07438294 8.782110712 8.570700861 8.621528952 229861645 endochitinase Carbon cycling Carbon degradation Chitin Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 8.603902596 8.766430682 8.376916669 8.380310111 8.415785992 8.679391854 8.719829718 8.544645889 8.783994173 8.676523253 8.922881091 8.852739611 88931995 CopA Metal Resistance Copper Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 8.369915651 8.273237854 8.186513678 8.087898891 8.310260502 7.983307217 8.269748269 8.249260452 8.054041432 8.035607296 8.020784758 157405184 trzN Organic Remediation Herbicides related compound Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 7.969257361 7.525936622 7.329752871 8.050224039 7.847105785 7.41122565 7.749168714 149359365 CopA Metal Resistance Copper Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 8.056814226 8.026687177 7.750362469 7.529534637 7.308971295 7.224523137 7.249633667 7.649086462 7.533598369 7.269063176 7.389013487 148254146 nagG Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.447463147 8.249974144 8.024260866 7.769419343 7.941177708 8.099680896 7.778507919 8.53370099 7.932880727 8.083603536 7.893031312 240103179 pstB Stress Phosphate limitation Thermococcus gammatolerans EJ3 8.533609012 8.830773468 8.722196964 8.317527551 8.265867014 8.214642956 8.224310564 8.285794396 6.981907456 8.395915567 8.275952758 8.291789746 212559297 pimF Organic Remediation Aromatics Aromatic carboxylic acid Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 7.641227679 7.392322351 7.306501716 7.007698978 7.012532048 44829089 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.942201024 8.66304859 8.963156071 7.879984405 7.82008175 8.138491989 7.97143579 7.639734748 7.780236291 7.927961682 8.424650644 238789950 pap virulence adhesin Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 8.731822568 8.833687536 8.480694387 7.866279377 7.807468015 7.968194326 7.942459763 7.518277975 8.074819291 7.512476868 7.522899382 8.043250274 214043104 xylA Carbon cycling Carbon degradation Hemicellulose Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.252878289 8.23404528 8.45733077 8.948935112 8.626086091 8.368893159 8.276323681 8.796924672 8.683841453 8.574801336 8.203835276 8.655611657 197767856 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 9.022052219 8.914309683 8.856648405 8.522082145 8.574085324 8.417425483 8.813375934 8.808375671 8.611181377 9.051640297 9.005358205 9.002781092 186972005 pilin virulence pilin Elusimicrobium minutum Pei191 superkingdom:Bacteria;phylum:Elusimicrobia;class:Elusimicrobia;order:Elusimicrobiales;family:Elusimicrobiaceae;genus:Elusimicrobium;species:Elusimicrobium minutum; 8.296711773 8.260340678 8.8421444 8.357833844 7.754254396 8.014907746 7.916458303 7.89313269 8.024637522 7.878567444 7.805842979 8.1836182 17132665 catB Organic Remediation Aromatics BTEX and related aromatics Nostoc sp. PCC 7120 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc; 9.450894975 9.624543985 9.56998722 8.989820135 8.747431151 8.893331982 8.790574679 8.665683659 8.896967651 8.767083004 8.820370337 9.147945864 126721064 oxyR Stress Oxygen stress Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.902675165 9.145953945 8.908512206 8.70345869 8.864590546 9.074731178 7.947210494 8.709242763 8.239594723 8.42335702 8.61512856 161380703 pcc Carbon cycling Carbon fixation Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 9.087283188 8.717687532 8.277837731 8.642538798 8.830533534 9.003441141 9.115162242 8.535053923 8.785738767 8.697108092 77166481 obgE Stress Radiation stress Nitrosococcus oceani ATCC 19707 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 9.688410196 9.687999014 9.654460369 8.802351285 8.57374478 9.17567612 9.350782496 9.034106586 9.083760987 9.01937942 9.14639808 9.358872701 224609822 pstB Stress Phosphate limitation Thioalkalivibrio sp. K90mix 8.203897016 8.738979112 8.678136189 8.605093325 8.670238625 8.48334096 196210280 ahpF Stress Oxygen stress Geobacillus sp. G11MC16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.263567954 8.312628147 8.116090543 7.721448651 7.805854348 7.881790675 7.895849562 7.880864971 8.273671079 8.052620462 8.123173858 8.140339709 193085180 dsrA Sulphur sulfite reductase Chlorobaculum parvum NCIB 8327 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum parvum; 8.213987593 8.124054545 7.241487533 7.273687221 7.341602918 7.015473152 7.197450816 7.262358051 7.534544244 253688480 vip virulence virulence protein Pectobacterium carotovorum subsp. carotovorum PC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 9.615129398 9.527726454 9.447787934 8.589310745 8.623306895 8.570459243 8.564878793 8.478986328 8.432525428 8.491546066 8.497654772 8.836122763 163812754 mer Metal Resistance Mercury Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 8.703339891 8.403729601 8.1338214 8.764041868 8.53640548 8.531499714 8.227985755 8.818199446 8.583960882 8.400194454 8.813149909 8.342737095 226240690 ahpF Stress Oxygen stress Rhodococcus opacus B4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 8.449416818 8.566707528 8.595602019 8.034088111 8.083721809 8.043500749 7.877904498 7.946502631 8.08112273 8.035204899 8.119967762 8.130756453 151562265 katA Stress Oxygen stress Ochrobactrum anthropi ATCC 49188 8.970727391 8.324741244 8.757357289 9.240254889 8.997062064 8.817285926 9.306905922 9.292785749 9.108452218 9.058565903 9.439576359 8.723429026 148241887 clpC Stress Protein stress Synechococcus sp. RCC307 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.358543853 8.454209481 8.673680688 7.805306176 8.00540915 8.340250717 8.789892881 7.629363196 8.859058459 7.813664185 7.740853501 7.873213138 68190298 ArsC Metal Resistance Arsenic Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 8.363933052 8.209910219 8.255562259 7.697504582 7.527872745 7.580228683 7.999325997 7.677345167 8.333645303 7.612268706 7.48830755 7.50962723 149184386 TehB Metal Resistance Tellurium Erythrobacter sp. SD-21 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 8.628283278 8.443175144 8.451692058 8.388459432 8.166273749 7.755009651 8.158362463 8.503751937 8.421547642 8.118959504 7.954127239 8.142712594 238752912 narH Stress Oxygen limitation Yersinia rohdei ATCC 43380 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia rohdei; 8.854007525 9.064195518 9.199289104 8.618279352 8.537313134 8.394831479 8.403922986 8.504585673 8.550760091 8.444355963 8.253646929 8.497266444 119898644 ArsC Metal Resistance Arsenic Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8.844343005 8.510792648 8.512491157 8.46618593 8.874946896 8.718302848 9.246726311 8.803454022 8.778394209 8.477889575 8.514430201 8.072934961 39933561 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.231755948 9.06700281 8.973496082 8.440729 8.382310765 8.603186038 8.499467823 8.265657622 8.776463359 8.389838983 8.711550491 8.541146988 94311453 ChrA Metal Resistance Chromium Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.425665052 8.478240465 7.630596352 7.983615634 8.004842226 8.371140563 7.492037589 8.387327974 7.732572752 8.02118603 7.838829717 158316157 sigma_70 Stress Sigma factors Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.309863966 8.493563454 8.638093239 8.864096958 8.64836016 8.351231065 8.683268621 9.101226497 8.675100232 8.680485746 8.333809297 241662430 iro virulence Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 9.171878346 9.191453529 9.270529524 8.475912242 8.283891376 8.344125604 8.718833701 8.415989748 8.842610045 8.290154413 8.574154238 8.340046164 145222277 ureC Nitrogen Ammonification Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 9.003961111 8.775231822 8.36175801 8.22347369 8.382074275 8.331870013 8.53517067 8.312270566 8.314577657 8.377656093 8.315007693 8.201274459 63256935 pulA Carbon cycling Carbon degradation Starch Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 8.717353076 8.730166497 8.44416837 8.590993705 8.374439305 8.494858225 7.948735898 8.376420649 8.151420126 8.423199794 8.667199652 8.502086965 240170514 oxyR Stress Oxygen stress Mycobacterium kansasii ATCC 12478 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 8.264086769 8.47030595 8.29382823 7.57995449 7.875662005 7.770332131 7.642681886 7.774271893 7.99203343 7.691331877 7.597331497 7.703905381 226098239 fnr Stress Oxygen stress Brevibacillus brevis NBRC 100599 8.67002523 8.275451617 8.865748189 7.807999475 8.043492876 7.982128827 7.870566387 7.580124565 8.177184279 7.686025381 7.610110285 7.944975795 209519923 AceB Carbon cycling Carbon degradation others Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 9.859623638 9.886591026 9.912506001 9.407522103 9.631972143 9.216940914 9.461244967 9.45768196 9.908821812 9.643427615 9.771440678 9.754892948 86569359 TerD Metal Resistance Tellurium Frankia sp. CcI3 8.735148748 8.996816587 8.848881095 8.957584141 8.902909881 8.69235611 9.065643618 8.79367664 8.938723725 8.695326369 221562524 cytochrome Energy process Energy process Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.00179567 7.762516513 7.605738572 28868154 TerD Metal Resistance Tellurium Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 9.5660411 9.599902922 9.653099642 9.355945628 9.196712129 8.977975758 9.282279062 9.25537384 8.992366246 9.346541945 9.302071276 9.354560435 89111272 cydB Stress Oxygen limitation Shewanella violacea superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella violacea; 8.24016885 8.284314822 7.15220061 7.107544884 7.153553936 6.594071145 7.520797807 219676486 mdlD Organic Remediation Aromatics Other aromatics gamma proteobacterium NOR5-3 9.009275189 9.002184997 8.8825187 8.37789071 7.877774704 7.988067692 7.654033375 7.81655306 8.086165035 7.938706742 7.602900063 8.364654092 157146457 endochitinase Carbon cycling Carbon degradation Chitin Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 8.437919209 8.497099296 8.39726722 8.143321397 8.570992961 8.801256907 8.436393433 8.574608148 8.442619549 8.688378014 8.8835299 8.534570262 110630622 nifH Nitrogen Nitrogen fixation uncultured soil bacterium superkingdom:Bacteria; 9.279501686 9.427973173 9.193874755 8.739915153 8.839438591 8.98033759 9.289826065 9.146913305 9.380064827 8.862892735 8.838154927 8.966348389 254487903 fnr Stress Oxygen stress Roseobacter sp. GAI101 8.283174824 8.089842278 7.495713143 7.304471555 7.609461074 8.212429454 7.672339811 7.666272422 7.749924562 7.533532769 147886082 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 8.504578126 8.727651507 9.005470469 8.612735093 8.597423004 8.577965932 8.665434026 8.956802098 8.870034191 9.02347963 8.787561664 8.894047235 87199697 bphA Organic Remediation Aromatics Polycyclic aromatics Novosphingobium aromaticivorans DSM 12444 8.790516936 8.648359659 8.618221057 8.642082547 8.697727451 8.636679022 8.627987782 8.89091046 8.551555783 8.84581838 8.695969987 8.693038396 28542627 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.684680563 9.613993003 9.735268106 8.889274424 8.788660532 8.857072775 8.808125271 8.621508081 8.927674198 8.600470855 8.707056942 9.157370439 256805731 katE Stress Oxygen stress Streptomyces viridochromogenes DSM 40736 9.214870973 9.167694113 9.011974857 8.981968315 8.969947949 8.75151687 8.677560084 8.994578198 8.751584762 8.876657203 9.003289641 8.906186739 88864720 nagG Organic Remediation Aromatics Aromatic carboxylic acid Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 10.35318672 10.32902353 10.08453818 10.52176477 10.43525677 10.16624387 10.55266805 10.29670437 10.24880915 10.28798301 10.33379487 10.16797795 118703430 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Sphingomonas wittichii RW1 8.908473969 8.59308069 8.825828685 8.273743619 8.42091233 8.790814447 9.034649231 8.754019514 8.896040033 8.391518304 8.427367271 8.568667888 119536938 glnA Stress Nitrogen limitation Nocardioides sp. JS614 8.077444645 8.145038208 7.56539684 7.507286065 7.807725577 7.352277652 7.187358592 7.298119846 261251606 proV Stress Osmotic stress Vibrio orientalis CIP 102891 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 8.606296112 8.701237057 8.627466744 8.242685956 8.124946846 7.963293718 7.940927955 8.19804931 8.298082193 8.04388365 7.935809063 8.200311403 190610419 mycobacterium_LysB_lipase Bacteria phage LYSIS Mycobacterium phage Pukovnik order:Caudovirales;family:Siphoviridae; 8.103932178 7.828712871 7.542167479 7.608375011 7.598507587 7.529946805 7.624123015 7.665532838 7.884304886 7.611068958 7.613476179 89890106 nitA Organic Remediation Aromatics Other aromatics Flavobacteria bacterium BBFL7 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria; 8.445149344 8.063156283 8.384961677 7.551928198 7.523098378 7.367227185 7.012642666 7.555055215 7.525336082 7.376460016 7.471132051 7.480350319 189218408 pstC Stress Phosphate limitation Methylacidiphilum infernorum V4 superkingdom:Bacteria;phylum:Verrucomicrobia;order:Methylacidiphilales;family:Methylacidiphilaceae;genus:Methylacidiphilum;species:Methylacidiphilum infernorum; 9.688407746 9.506804368 9.71019856 8.848599849 8.717551143 8.752422812 8.587762571 8.695837847 8.686805887 8.684857892 8.674525666 9.076146796 91798470 pstB Stress Phosphate limitation Chromohalobacter salexigens DSM 3043 8.877712864 9.031883445 8.95358821 8.411807671 8.428919669 8.324175165 8.416129364 8.59074976 8.773527336 8.45284665 8.345850108 8.930102221 228912395 hly virulence hemolysin Bacillus thuringiensis IBL 200 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus thuringiensis; 8.698168186 8.54014176 8.798995086 8.126002576 8.097490233 8.305862517 7.938540448 7.913959759 7.998023918 7.833454599 8.082372602 47575191 ChrA Metal Resistance Chromium Rubrivivax gelatinosus PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 9.220471125 9.33727977 9.119632181 8.787677308 8.689327896 8.600127184 8.531064399 8.641623794 8.653895724 8.609290363 8.607768435 196478338 CusF Metal Resistance Copper Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 9.564030878 9.226342587 8.838388059 9.635916989 9.193326911 9.043871521 9.763998312 9.647140949 9.376911469 9.291417734 9.092377108 9.043733712 157011584 APS_AprA Sulphur adenylylsulfate reductase uncultured bacterium 8.837700658 8.729202276 8.997679368 8.228408711 7.966167719 8.342547094 8.099671294 7.892495978 8.287803759 7.782119135 8.0306604 8.335371787 216064 endolysin_transglycosylase Bacteria phage LYSIS Bacillus phage PZA order:Caudovirales;family:Podoviridae;genus:Phi29-like viruses;species:Bacillus phage phi29; 8.126648907 8.059653102 112821398 carA Organic Remediation Aromatics Heterocyclic aromatics Sphingomonas sp. KA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.581374032 8.675358387 8.62219997 8.030790869 7.991443892 8.066724681 8.198017516 7.808885952 8.585646472 7.98892388 7.81119494 7.95139263 89358822 Catechol Organic Remediation Aromatics Other aromatics Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 9.425666008 9.487626564 9.558114257 9.145816941 9.15854865 9.026817331 9.02043656 9.188346071 8.992125396 9.213441193 9.198381939 9.080433622 283807809 sigma_24 Stress Sigma factors Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 8.595344888 8.74362859 8.384340029 8.034834683 8.026089226 8.121423027 8.118572266 7.889282736 8.223759979 7.933940194 7.87941846 7.91079315 209883385 ChrA Metal Resistance Chromium Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 8.692108226 8.729292434 8.344269628 8.410442845 8.326268683 7.978907111 8.035011253 7.892414621 8.478252932 8.00879847 7.815306934 7.950579175 117984470 atzC Organic Remediation Herbicides related compound Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 9.446724227 9.493378142 9.899337085 9.946662943 10.16687177 9.78977278 9.505762787 10.13199628 9.416873777 9.866056608 9.76535104 10.13865257 119391625 narG Nitrogen Denitrification Microbacterium sp. D1-15 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium; 9.503688811 9.538334722 9.892640108 10.021985 9.880449438 9.506669617 9.693585768 10.05445403 9.749762018 9.888520821 9.588592925 9.750507619 23012809 ChrA Metal Resistance Chromium Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 8.419076328 8.525253215 8.669892361 8.411847207 7.796563698 8.187048541 7.258173818 7.349418218 7.663108992 7.774145141 8.053808044 218248694 nagG Organic Remediation Aromatics Aromatic carboxylic acid Cyanothece sp. PCC 8801 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.933730846 8.966399676 8.987231964 8.306627258 7.837606456 8.184840266 8.112464534 7.84312581 8.252877071 8.223212629 8.086438736 8.390175374 111615152 PobA Organic Remediation Aromatics Aromatic carboxylic acid Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 8.235543992 8.217242203 8.123700068 8.292643433 8.128460312 7.904267754 8.013572182 7.944164299 8.081256613 7.808164252 7.92708683 7.442646336 104781312 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 10.10005873 9.927337393 10.15198534 9.280340047 9.227035739 9.422319756 116634793 narG Nitrogen Denitrification uncultured bacterium 8.745067744 8.904427184 8.381566277 8.461253645 8.287699443 8.245095465 8.43591553 8.57247133 8.34455437 8.428189807 8.892584727 8.357529146 269141234 pstS Stress Phosphate limitation Brevundimonas subvibrioides ATCC 15264 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas;species:Brevundimonas subvibrioides; 8.47041085 8.745146713 8.787540661 8.087388121 8.720756346 8.798397085 8.615478589 8.774699321 8.860262437 8.514952226 8.560507442 146403708 sox Sulphur Sulphur oxidation Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 8.588751435 8.339352321 8.48818701 7.720039786 7.652253926 7.766225859 8.02728518 7.518015054 8.570392264 7.568880809 7.763596221 7.801006331 82702311 fnr Stress Oxygen stress Nitrosospira multiformis ATCC 25196 7.809371643 7.377532846 7.806744138 73537521 iro virulence Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.969567875 9.12314468 9.020808092 8.686726612 8.655261998 8.945809774 9.159252333 8.846270135 9.252698226 8.924505229 8.967646027 9.07753161 171060369 pmdAB Organic Remediation Aromatics Others Leptothrix cholodnii SP-6 8.946075195 8.897841149 8.873761549 9.004929342 8.742286516 8.418529345 8.799305464 8.683264255 8.59128176 8.816662732 8.719209131 104782366 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 8.839303862 9.05656162 8.903030832 8.456332506 8.461616538 9.003336546 9.104192434 8.73417483 8.919331969 8.969919503 8.907859684 9.2492841 84502603 pimF Organic Remediation Aromatics Aromatic carboxylic acid Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 8.308921203 8.352710194 8.549660875 8.663508309 8.438913276 8.175306541 8.039124424 8.621865655 8.534632824 8.315230354 8.256755625 8.443794852 115257549 B_lactamase_C Antibiotic resistance Beta-lactamases Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.95741976 8.041680516 7.192642175 7.287063892 7.127558707 7.031196256 6.863245704 7.459749128 7.128970635 7.294540213 7.306724733 83844809 ureC Nitrogen Ammonification Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 8.896961405 8.635092516 9.14358667 8.452441754 8.556974288 7.852506856 8.636171986 8.959865359 8.713325462 8.807244121 8.686288254 8.920843696 33634742 proV Stress Osmotic stress Prochlorococcus marinus str. MIT 9313 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 8.400501716 8.873574488 8.659500012 7.731983111 8.257717329 8.463336646 8.873767002 8.07838948 8.948044676 8.077598294 7.873135112 8.353022771 218680457 nmoA Organic Remediation Aromatics Nitoaromatics Rhizobium etli CIAT 894 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 9.015285948 8.966309132 9.246282875 8.472578976 7.904148202 8.761494173 8.577950155 8.743563804 8.698083723 109290252 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.937865353 7.783164024 7.682262652 7.65623747 7.839249172 8.00247582 7.795705862 7.54047498 7.639841856 107856917 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 8.830721737 8.435350594 8.393108489 8.666293287 8.400680606 7.946798626 8.444637843 8.399620306 7.98826536 28855347 SMR_antibiotics Antibiotic resistance transporter Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 8.45967209 8.711581887 8.517328085 8.54244285 8.375020953 8.898305663 7.586062592 8.863891978 8.123932851 8.117050219 220920235 AceB Carbon cycling Carbon degradation others Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 9.578622199 9.636869873 9.485246998 9.316508665 9.467820364 9.519118852 9.472202461 9.678871838 9.313175456 9.596360282 9.387058606 219862199 tfdB Organic Remediation Aromatics Chlorinated aromatics Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 9.93660101 9.860000813 9.577531179 9.94455578 10.10877585 10.17802397 9.75912642 10.15389154 9.682826083 10.08088639 10.28378141 9.673693575 209539308 atzC Organic Remediation Herbicides related compound Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.7286642 8.595576455 8.642906221 8.373538671 8.192411699 8.176324684 8.386219743 8.43716285 8.665958728 8.200839265 8.11910996 8.192154623 2196854 gyrB other category gyrB Citrobacter sp. MAM-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter; 8.771698378 8.900888729 8.877266703 8.475188224 8.537243387 8.419337433 8.189526787 8.494384483 8.331716393 8.293810738 8.424263416 8.708995727 119963087 AceB Carbon cycling Carbon degradation others Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 10.39702383 10.36176135 10.56186414 9.90398089 10.02321863 10.28984205 10.51787373 10.11044875 10.72518 10.52006453 10.47820356 10.54144893 72160583 sigma_24 Stress Sigma factors Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 8.387723484 8.565420659 8.738428507 8.868066934 8.782532644 8.745486104 9.150445567 8.645500867 8.946624465 8.505979776 8.599134932 161164464 ppx Phosphorus Phosphorus utilization Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 9.568698589 9.627613579 9.336594348 9.215855028 9.819692697 9.791031072 9.876421422 9.983515742 9.48857859 9.877921794 9.502048696 116696785 sigma_24 Stress Sigma factors Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 8.712464569 8.610658576 8.622842208 8.447040373 8.414868951 8.122492018 8.307439678 8.557949215 8.550211529 8.451460702 8.453153486 8.645451331 114571425 oxyR Stress Oxygen stress Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 8.350265282 8.68369318 8.44577335 7.896107137 8.060467231 8.244311204 8.657467938 8.227008742 8.448816147 8.134015719 8.345716718 8.395249878 221068186 CadA Metal Resistance Cadmium Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 9.507435509 9.483539802 9.405910666 8.832682964 8.619701042 8.505837791 8.836391045 8.797945186 8.907513072 8.50660206 8.699615864 8.813103703 56476082 NiR Nitrogen Assimilatory N reduction Aromatoleum aromaticum EbN1 9.237231836 9.378693177 9.333324345 9.365406488 9.247748474 8.880754558 9.459653543 9.463050374 9.682105459 9.400452873 9.445194401 9.567735106 170659050 fnr Stress Oxygen stress Methylobacterium radiotolerans JCM 2831 9.995048488 10.06492688 10.06309928 9.535258543 9.736700638 9.589184569 9.718037229 10.05272613 10.05333564 9.992644137 9.855598599 9.980572646 68535245 grpE Stress Heat shock Corynebacterium jeikeium K411 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 8.861427376 8.354381361 8.541184004 8.601479288 8.502082208 8.364323466 8.122763706 8.463532964 8.201534018 8.485031564 8.40189289 8.250055805 90204944 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 9.011724286 9.009133075 9.143758635 8.680007338 8.972033845 8.651401182 8.489429347 8.994479079 8.581384933 8.762553416 8.616116605 8.926352451 264680683 AceB Carbon cycling Carbon degradation others Comamonas testosteroni CNB-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.950497678 8.604005833 8.805428151 8.865776058 8.666435027 8.587625339 9.153747667 8.877051653 8.845531722 8.956455635 9.141288295 8.826002778 152985813 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.538760754 8.378762541 8.589151475 8.497165789 8.325805428 8.196233569 8.233112288 8.33022432 8.194036981 8.375659593 8.260979504 8.325750046 94482874 rubisco Carbon cycling Carbon fixation Telmatospirillum siberiense superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Telmatospirillum; 8.600849993 8.636976377 8.752805225 7.921535095 7.730230563 8.033259272 8.003219959 7.660175853 8.149585058 7.730057702 7.554850135 7.833148942 149921072 sigma_24 Stress Sigma factors Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 8.828761474 8.572919105 8.272426106 8.489754308 8.762181228 8.252516203 8.532927634 8.79146551 8.588742618 8.78217287 8.497609387 8.470329408 269136189 iro virulence Klebsiella variicola At-22 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella variicola; 8.513636155 8.454979157 8.346367574 8.339422696 8.075973102 8.53432945 8.488290858 8.063744019 8.514051853 8.761590774 8.251122835 219679848 sigma_32 Stress Sigma factors gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 9.234389739 9.013414221 9.476409759 8.64702431 8.724789623 8.543843691 8.40480956 8.420233713 8.475904428 8.580638569 8.490091345 8.738282951 29606364 ureC Nitrogen Ammonification Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 8.236140256 8.303040173 8.547254245 7.757110855 8.025758726 7.748934172 7.601670904 8.029635466 8.183235538 7.944874911 7.692710005 7.962676107 209873656 ppk Phosphorus Phosphorus utilization Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 8.277210555 8.3806464 8.470002265 8.567350705 8.577969249 8.229445398 8.35997547 9.020313648 8.502910449 8.772454638 8.368045577 8.449188731 158113526 TerD Metal Resistance Tellurium Frankia sp. EAN1pec 8.616045672 8.602176698 8.45127801 8.509378369 8.297434925 8.195974201 8.252134484 8.199198738 8.377612468 8.208588596 8.163887878 8.262015261 224438073 pstB Stress Phosphate limitation Helicobacter cinaedi CCUG 18818 9.107647838 8.80623462 9.047261926 8.389094195 8.152481278 7.885149753 8.011247301 7.650829124 7.340960811 7.912181212 7.913855086 8.330862381 71155754 atzD Organic Remediation Herbicides related compound Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 9.259404364 9.350008266 9.267000722 8.920654693 8.562154159 8.403877787 8.522353596 8.757601385 8.559052718 8.775105751 8.800339555 8.985100311 14715451 xylF Organic Remediation Aromatics BTEX and related aromatics Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.26380199 8.37839776 7.902997537 8.249230995 8.499411102 8.12386972 8.415527199 8.244822114 8.451584053 8.24231078 68345965 trzN Organic Remediation Herbicides related compound Pseudomonas fluorescens Pf-5 8.42254538 8.452567488 8.608869008 8.078863073 7.651512116 7.831136191 8.022336676 7.958364209 8.320745388 7.523762851 8.142608642 7.640281029 241764576 narH Stress Oxygen limitation Acidovorax delafieldii 2AN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax delafieldii; 9.611797589 9.286629868 9.674283992 9.576912397 9.563497912 9.394663204 9.22565893 9.539826568 9.051274903 9.483829719 9.768978214 9.369349585 161729065 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 8.949042778 8.79978694 8.812403647 8.446906428 8.641343329 8.339904389 8.247070868 8.091533328 8.072499987 8.234349167 8.577919852 209869148 dsrB Sulphur sulfite reductase uncultured marine bacterium 9.859563827 9.318645862 8.827520381 8.928089553 9.355329209 9.243479049 9.001446586 9.245191224 8.636427693 8.911389466 8.598059608 40795448 clamp_loader_T4_ATPase Bacteria phage REPLICATION Aeromonas phage 65 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 6.846153509 7.013979745 7.419211311 7.305849053 158109546 TerD Metal Resistance Tellurium Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.335101787 8.249387929 8.114993443 8.435910417 8.48888945 8.030503608 8.669049751 8.457919197 8.433837149 8.340796386 8.635525703 8.009978199 260647446 pcc Carbon cycling Carbon fixation Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 9.735792001 9.556063781 9.514131559 9.716626156 9.6002188 9.570547327 9.496758827 10.06630605 9.337707025 9.777912785 9.661332093 9.786739301 88789176 pulA Carbon cycling Carbon degradation Starch Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 9.076004468 8.984465096 9.146883894 8.382444844 7.962881997 8.394737495 8.368851285 8.203602257 8.48736552 8.268936536 8.236646715 8.38555995 149210175 AceB Carbon cycling Carbon degradation others Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 8.922225351 9.190047902 8.132767792 9.056505705 8.656318371 8.696427946 8.824614333 8.465910757 8.631101597 8.667025343 8.519274415 145570864 AceA Carbon cycling Carbon degradation others Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 8.68579122 8.571429026 8.952318373 8.459803826 8.470222282 8.157118356 8.463571714 8.675922697 8.405812108 8.559980408 8.505110747 8.68026254 2105094 narH Stress Oxygen limitation Thermus thermophilus superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus; 8.095650193 8.22746803 8.091431881 7.6089107 7.506891042 7.471616575 7.733193215 7.386457646 8.24400236 7.567656014 7.560021382 7.683090704 218248825 ChrA Metal Resistance Chromium Cyanothece sp. PCC 8801 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.529343598 8.459992629 8.497241053 7.88030032 7.660202425 7.764597781 7.378309317 7.216825319 7.811551031 7.70073778 7.223778328 7.912004291 224820660 amyA Carbon cycling Carbon degradation Starch Natrialba magadii ATCC 43099 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natrialba;species:Natrialba magadii; 9.45877517 9.587652086 9.572431151 9.209122273 9.370627465 9.292501131 9.133480705 9.55110243 8.946430869 9.357847249 9.400275094 9.545900828 257044969 fnr Stress Oxygen stress Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8.563299699 8.36561677 8.532805198 8.764524182 8.698127012 8.498372768 8.793401367 8.559114294 8.66871995 8.719899111 8.642444784 8.591400078 145595788 chnB Organic Remediation Other Hydrocarbons Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 8.971063447 9.093789409 9.126886148 8.625196688 8.593618106 8.43610283 9.077186518 8.568965679 9.29294635 8.611735706 8.490972376 8.552424967 199584249 CopA Metal Resistance Copper uncultured bacterium superkingdom:Bacteria; 8.476481794 8.124387389 8.280799598 8.193435597 7.842203038 7.784001469 7.697199796 7.975385174 8.250083715 7.964964904 8.070322094 7.800407625 85703114 pstA Stress Phosphate limitation Roseovarius sp. 217 8.589251133 8.752633594 8.8795718 8.872507995 8.524604555 8.333491929 8.667678689 8.88559584 8.756612757 8.883597607 8.76386965 162952281 mer Metal Resistance Mercury Renibacterium salmoninarum ATCC 33209 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Renibacterium;species:Renibacterium salmoninarum; 8.827523375 8.63335552 8.798235532 8.434793043 8.457411907 8.522157207 8.38683722 8.661779999 8.571693319 8.425158558 8.503350113 8.528795025 86572416 phtA Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.752658248 9.053839404 8.873749992 8.613920589 8.693526445 8.889568563 9.137111668 8.45325125 8.955012185 8.510087943 8.553085349 8.606020752 168198540 PobA Organic Remediation Aromatics Aromatic carboxylic acid Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 9.813604194 9.836020143 9.979751335 9.661686535 9.74117944 9.600293604 9.727622681 9.505959494 9.788547937 9.749306373 9.811071916 9.465127747 110285689 nreB Metal Resistance Nickel Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 9.151156446 9.133814147 8.980029356 8.653635428 7.894768287 8.628210653 8.688269154 8.383941329 8.485671145 8.487991338 8.579278614 226939450 pstB Stress Phosphate limitation Laribacter hongkongensis HLHK9 8.142381161 8.163420442 7.507201017 7.641996898 7.614725206 7.517930932 7.357511599 7.854392664 7.777476471 7.563226886 7.502070575 218247263 NiR Nitrogen Assimilatory N reduction Cyanothece sp. PCC 8801 8.288101426 8.441026508 8.459229503 7.765012662 7.55210146 7.587000405 7.220815662 7.168418556 7.773689658 7.513881582 7.279635829 7.845453847 183598270 dmsA Organic Remediation Others Providencia stuartii ATCC 25827 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia stuartii; 8.569635594 8.334505684 8.364433437 8.030154196 7.956268256 7.881915376 8.355693598 8.119520945 8.490319364 7.84520853 7.731318598 8.114532185 184192108 pstA Stress Phosphate limitation Burkholderia phymatum STM815 9.485056852 9.302211887 9.649439789 8.709000937 8.723295879 8.821734565 8.882309553 8.867347519 8.736005247 9.15267789 9.027147759 9.090202954 257388952 pcc Carbon cycling Carbon fixation Halomicrobium mukohataei DSM 12286 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halomicrobium;species:Halomicrobium mukohataei; 9.489091984 9.544649468 9.504613191 9.069394239 9.038352669 8.952728061 8.822591611 8.909241058 8.942951235 9.016629065 9.146748126 60686970 ArsA Metal Resistance Arsenic Acidithiobacillus caldus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus; 8.268328637 8.364499714 8.303583961 8.427960751 8.607744571 8.372342572 8.161768592 8.613883862 8.449476206 8.540056338 8.455481724 8.127933078 115387699 glnA Stress Nitrogen limitation Aspergillus terreus NIH2624 8.831348404 8.675767845 8.546853901 8.364726159 8.256537116 8.294115699 8.084612791 8.195194417 8.203652467 8.182989151 8.229548309 8.345199387 261877037 narH Stress Oxygen limitation Selenomonas noxia ATCC 43541 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas noxia; 8.238949447 8.34928353 8.310845161 7.972406709 8.110655012 8.109287262 8.068703443 8.061896787 8.198961868 8.020237974 8.326397187 8.057893632 154352117 pcc Carbon cycling Carbon fixation Bacillus amyloliquefaciens FZB42 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 8.91388892 8.434758214 8.328255238 8.784572899 9.204821713 8.784350465 8.284776868 9.367197124 8.457057014 9.004655516 9.040294762 9.26346433 225194055 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9.057906674 9.002105944 9.186673213 8.334331181 8.616910176 8.567107991 8.69757923 8.086492125 8.577914594 8.182975832 8.26248782 8.673044579 113897676 TerC Metal Resistance Tellurium Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 7.136081141 7.087806323 8.040229319 7.239009067 7.441864605 116075407 sigma_70 Stress Sigma factors Synechococcus sp. RS9916 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.315588831 8.418171365 8.043721673 7.934532155 8.070542458 7.6273714 7.671889006 7.886832382 7.992889007 8.080153941 211585717 phytase Phosphorus Phosphorus utilization Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 9.047735323 9.030917829 9.118927372 7.964592524 8.159667086 8.091484251 8.669417429 8.442149847 8.793282992 8.26144063 8.278589096 8.323743301 72161237 amyA Carbon cycling Carbon degradation Starch Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 9.069462925 8.824050164 8.957637721 9.260303792 9.039974328 8.623142789 8.740817751 9.445536142 9.121526534 9.239726818 8.988830266 9.166386622 226245607 pstB Stress Phosphate limitation Rhodococcus opacus B4 8.981043405 8.534891533 8.408214222 8.260592386 8.120748488 7.993344749 7.905913334 8.127855826 8.192135709 7.972100471 8.074079371 8.146368645 209528556 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.435934351 8.071631734 7.461627747 7.677215842 7.867250719 6.852828884 8.371517062 7.447984337 7.343802296 7.813345727 29609423 Catechol Organic Remediation Aromatics Other aromatics Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 8.263873166 8.240837874 8.101083297 7.633593921 7.855642481 8.012146414 7.785610365 7.652500895 8.307181596 7.496615481 7.7000472 7.773205665 170775583 fnr Stress Oxygen stress Leptothrix cholodnii SP-6 8.28034721 8.249467425 8.567822519 7.403870873 7.684626473 8.081570781 8.330493135 7.936920249 8.418900799 7.839199421 7.909390326 7.618029134 123444272 cellobiase Carbon cycling Carbon degradation Cellulose Yersinia enterocolitica subsp. enterocolitica 8081 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 9.056420474 9.23618821 9.245419049 8.624135489 8.517182273 8.526004949 8.21084816 8.242469888 8.328768433 8.275788338 8.506472491 8.763655301 149190072 endochitinase Carbon cycling Carbon degradation Chitin Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 8.831423362 8.81707113 8.702680086 8.154551824 8.084155839 8.307907364 8.199941383 7.896941043 8.163202244 8.11269136 184154771 ppx Phosphorus Phosphorus utilization Lactobacillus fermentum IFO 3956 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus fermentum; 7.147316423 7.27376495 7.092857918 7.00677847 78484884 pstB Stress Phosphate limitation Thiomicrospira crunogena XCL-2 8.470774831 8.461736771 8.454980786 8.120347089 7.685375157 6.775420688 7.583509167 7.6565435 7.950192235 7.790078459 212709430 gdh Nitrogen Ammonification Providencia alcalifaciens DSM 30120 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 8.621477404 8.584703594 8.773607102 8.512541936 8.280582785 8.184697416 7.702553408 7.498467034 7.919385864 7.799732866 8.079481051 15963815 AceB Carbon cycling Carbon degradation others Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 8.189833526 8.459037195 8.336756843 7.825324886 7.636827003 7.71011562 8.139929308 8.269830043 8.169334132 8.085256617 187724096 dehH Organic Remediation Chlorinated solvents Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 9.663093343 9.834766975 9.217375286 8.832927937 9.045673196 133912674 pcaG Organic Remediation Aromatics Other aromatics Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 8.841441338 8.758770848 8.978813464 8.374719207 8.19014056 8.170066516 8.531650254 8.038320959 8.466178813 8.412485868 8.10385864 8.31592257 161393242 pcc Carbon cycling Carbon fixation Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 8.520096783 8.529400078 8.801084007 8.149485002 7.926472734 7.960714258 7.600293835 7.663152079 8.203208854 7.868106231 7.679555105 7.931331386 157285714 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 9.341943714 9.043303042 9.115518378 9.109280168 8.851718928 8.840644635 8.742689147 8.900607075 8.765296072 9.011394251 9.045978816 8.851448476 149917528 vanA Carbon cycling Carbon degradation Others Plesiocystis pacifica SIR-1 9.856831386 9.609807855 9.712363043 9.101845524 9.258551411 9.261664831 116633900 narG Nitrogen Denitrification uncultured bacterium 8.537593273 8.392212481 8.557369414 7.696847917 8.138466006 7.931416565 7.885943268 7.134663844 8.106664813 7.821669151 8.158530747 8.197708046 115376573 cap virulence capsule Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 9.118962239 9.182931004 9.289491665 8.576407251 8.064869751 8.573862532 8.635031213 8.449516703 8.49320906 8.465533076 8.447381249 8.665281578 162568511 aoxB Metal Resistance Arsenic Pseudomonas sp. 73 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.66984901 8.618709004 8.76978884 8.066115627 7.884646528 7.655250176 7.551679696 7.574001888 7.931401527 7.565279061 7.375196418 7.790846155 158312209 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 9.262856441 9.064211154 9.376176129 8.920917201 8.585589034 8.47567966 8.459948262 8.789167994 8.71482362 8.451405822 8.902807846 94555037 pstS Stress Phosphate limitation Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 8.572926684 8.602338055 8.821694136 8.14013394 8.276264988 8.56113392 8.122648497 8.158459163 8.367406603 7.966272114 8.25899368 8.165192323 110817875 pcaG Organic Remediation Aromatics Other aromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 9.12077728 9.012016658 8.957159676 8.58388816 8.490176181 8.668714196 9.145304293 8.607276621 9.398963922 8.512647729 8.575494471 8.623660668 68536649 alkK Organic Remediation Others Corynebacterium jeikeium K411 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 8.335916078 8.399048946 8.742605247 7.644864043 7.759801239 7.707352799 7.923548552 7.53220575 8.069246783 7.588783056 7.548034499 7.997314689 26454359 grpE Stress Heat shock Mycoplasma penetrans HF-2 superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Mycoplasmatales;family:Mycoplasmataceae;genus:Mycoplasma;species:Mycoplasma penetrans; 7.164166454 7.007242238 6.687780355 7.152809008 84711631 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8.406684634 8.259818293 7.252610496 7.789711186 7.778184064 7.114030061 7.32443532 7.681543255 109521501 single_strand_annealing_protein Bacteria phage REPLICATION Mycobacterium phage Wildcat order:Caudovirales;family:Siphoviridae; 8.069421382 8.001919417 7.889220486 7.766941841 7.801414623 7.693436376 7.965239856 7.803745845 7.841077156 7.821825376 42561627 pcpE Organic Remediation Herbicides related compound Sphingobium sp. UG30 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 8.732223827 8.449087345 8.886888646 8.686314387 8.575795049 8.099204658 8.43958206 8.833689353 8.495972408 8.635935813 8.621564294 8.898259084 114545546 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.424504981 8.316668841 8.135569607 8.173109342 8.065696659 8.048484395 8.035336658 8.453993298 7.861145759 7.823427104 7.776349957 283830219 sigma_70 Stress Sigma factors Candidatus Poribacteria sp. WGA-A3 superkingdom:Bacteria;phylum:Candidatus Poribacteria; 8.788687074 8.795509593 8.962146834 8.146693193 8.168586528 8.451249819 8.841063399 8.688771899 8.353824959 8.154535779 8.355613043 8.444570089 226364699 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 8.245176688 8.047090125 8.136483568 8.17746867 7.978372331 8.057974861 8.436942569 8.21605119 8.362322846 8.024698922 8.142873712 190573288 sigma_24 Stress Sigma factors Stenotrophomonas maltophilia K279a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 9.080711917 9.130090941 9.24840546 8.541900644 8.263726399 8.399941853 8.475709059 8.16079176 8.567247037 8.257259017 8.287243947 8.61826692 258552690 SMR_antibiotics Antibiotic resistance transporter Zymomonas mobilis subsp. mobilis NCIMB 11163 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Zymomonas;species:Zymomonas mobilis; 9.472123893 9.419189025 9.503801532 8.99095652 9.087941005 9.083036749 9.116749155 9.424086526 8.872791568 9.301489838 9.580881525 9.421216238 189500179 pstB Stress Phosphate limitation Chlorobium phaeobacteroides BS1 8.834457711 8.96940545 8.13250517 8.008190864 7.744227016 8.301440474 7.684580219 8.093834925 8.005592873 8.081975283 148556254 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.911826483 9.055177772 8.915000592 8.147484067 8.098802284 8.189448454 8.663248309 8.169821524 8.516793027 8.176661708 8.13819736 8.377779521 81176587 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.148732583 8.805480309 8.649836932 8.600271576 8.647966152 8.549220973 8.831392072 8.684539915 8.625689376 8.558957066 8.399885582 8.595723006 153002217 nrfA Nitrogen Dissimilatory N reduction Shewanella baltica OS185 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 8.700957802 8.994547122 9.073128562 8.537007612 7.922621305 7.892280168 8.164843092 54016529 xylG Organic Remediation Aromatics Aromatic carboxylic acid Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 9.201391304 9.365656058 9.228307937 8.735500686 8.682722463 9.009922318 9.252870073 9.063777005 9.083067515 9.094527654 9.14306785 9.349170601 268161526 proV Stress Osmotic stress Photobacterium damselae subsp. damselae CIP 102761 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium damselae; 8.854796498 8.551539948 8.925272167 8.088428603 7.982881068 7.842387551 7.809475448 7.779173087 8.049082254 7.901428172 7.905845122 8.228304882 120595227 pimF Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8.437961944 8.773979998 8.425663794 8.446607238 8.290381946 8.173473869 8.554156947 8.351005108 8.835711585 8.53200872 8.222025555 8.2050482 85698448 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Nitrobacter sp. Nb-311A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter; 8.199632554 7.891225404 7.97915868 8.187189851 8.129322342 7.821501542 8.05200211 7.937663731 7.997509801 7.659856896 7.718210013 7.871038835 218675453 ppx Phosphorus Phosphorus utilization Rhizobium etli GR56 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.181805389 8.21757959 8.206186613 8.183239329 7.869953805 8.077320867 8.433430774 8.307628057 8.066134279 7.948869262 8.039846312 26278782 narG Nitrogen Denitrification uncultured bacterium 8.386293596 8.519674677 8.662118939 8.402890934 8.363678337 8.167916928 8.329660143 8.317154993 8.406053516 8.26457152 8.22673316 8.21508744 196176604 ureC Nitrogen Ammonification Microcoleus chthonoplastes PCC 7420 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus chthonoplastes; 8.173077534 8.118072802 8.048985501 8.233721686 8.302201772 8.130194848 8.172236686 8.557530079 8.230361793 8.401441929 8.183666109 8.397046803 126224625 tfdA Organic Remediation Aromatics Chlorinated aromatics Burkholderia pseudomallei 668 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 7.599226159 7.69914782 7.53518506 7.434333946 7.449099489 7.254422186 7.038782615 7.914424488 7.472307453 116181638 ara_fungi Carbon cycling Carbon degradation Hemicellulose Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 8.931051528 9.091402716 9.222827811 9.184371559 8.644327953 8.518399914 8.209377385 8.196560633 8.363701782 8.16843882 8.622649569 86282167 xylanase Carbon cycling Carbon degradation Hemicellulose Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 9.79429206 9.792048748 9.805426334 9.371332323 9.305760607 9.200009575 9.706259735 9.728842718 9.227643545 9.683769058 9.629768108 9.467942125 222147324 grpE Stress Heat shock Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 8.280107049 7.989398993 8.115314059 7.735074083 7.66495967 7.630140416 8.059023496 7.631990635 7.609427727 7.639682914 7.617014369 109900037 obgE Stress Radiation stress Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 7.1418857 7.020869211 6.976558141 118471677 vanA Carbon cycling Carbon degradation Others Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 7.972765275 7.961301327 8.217166452 7.559385546 7.472594912 7.837933305 7.765866812 7.455063531 8.082054444 7.751946438 7.567371836 7.783131679 158511028 tutFDG Organic Remediation Aromatics BTEX and related aromatics Candidatus Desulfococcus oleovorans Hxd3 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus;species:Desulfococcus oleovorans; 9.116445949 9.168960127 9.13913206 8.720752457 8.552707849 8.455941466 8.592452387 8.420692312 8.38643197 8.444102208 8.314734363 8.681054172 34332846 ZntA Metal Resistance Zinc Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 7.592285583 7.207776181 7.444446921 7.690034672 7.485910588 7.550562314 7.620463645 7.404551443 124509798 hly virulence hemolysin Shewanella putrefaciens 200 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella putrefaciens; 9.696219059 9.769601925 9.942988495 8.973665194 8.959070847 8.812533542 8.692358382 8.687836334 8.808678348 8.774855748 9.101088679 109290333 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.99059627 8.111880249 8.104554099 7.35845413 7.509298385 7.298265046 7.315891175 7.30792378 167648651 nitA Organic Remediation Aromatics Other aromatics Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.144320377 8.209478324 8.476347041 8.537668462 8.466338567 8.356244267 8.360818458 8.869996444 8.514640234 8.612206034 8.835749551 9.004338457 227341553 sigma_24 Stress Sigma factors Rhizobium sp. NGR234 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 8.575968825 8.538767304 8.408273995 8.276265857 8.647571518 8.991061404 9.393007174 9.01148312 8.948615644 8.890806729 9.008291693 8.865828183 225180445 glnA Stress Nitrogen limitation Clostridium sp. M62/1 8.244305787 8.505604399 8.374388699 7.878047888 8.430896932 8.713521099 8.386452862 8.735580521 8.185040719 7.964386934 8.116557018 197704735 iro virulence Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 8.365597481 8.412823252 8.26581861 8.463624897 8.573940655 8.716023053 8.518686715 8.766665078 8.324951907 8.610581698 8.911489234 8.540578417 160863276 dsrB Sulphur sulfite reductase Desulfovibrio vulgaris str. 'Miyazaki F' 8.905833066 8.881430161 9.175251285 8.440750356 8.729157326 9.000306626 9.256862294 8.634263216 9.213625544 8.763974949 8.546900524 8.750819755 169117831 mer Metal Resistance Mercury uncultured organism 8.749208319 8.713099439 8.690511185 8.188792477 8.108068464 7.836626014 8.074996417 8.137832844 8.1241447 8.093585245 8.168941395 229468815 clpC Stress Protein stress Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 8.561065421 8.467618654 8.318612609 8.184867024 8.163821751 7.622132735 7.816116862 8.260271376 8.096418824 7.905057413 8.3094705 99083199 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 6.922457299 7.147947337 239910635 ahpF Stress Oxygen stress Thermococcus gammatolerans EJ3 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus gammatolerans; 7.270294356 7.266315744 7.36917867 7.470609451 24982949 nitro Organic Remediation Others Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.381837788 8.246230112 8.09252988 8.195874173 7.940600398 7.747289654 7.981608444 8.162868294 8.203401569 7.943002189 7.709030045 7.763027842 13365755 MFS_antibiotic Antibiotic resistance transporter Kitasatospora griseola superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Kitasatospora; 8.140564775 8.362561497 8.240412999 8.167414494 8.253729756 7.91426667 8.319696514 8.578142684 8.547425955 8.486052247 8.087766149 8.281395742 119535827 pstB Stress Phosphate limitation Nocardioides sp. JS614 9.617930279 9.545128184 9.608917119 8.941857281 9.161847605 8.698027533 8.805792083 8.507825706 8.963744787 8.753697476 8.72536131 8.931396819 56965698 glnA Stress Nitrogen limitation Bacillus clausii KSM-K16 8.159451784 8.026488553 8.177364841 7.279918464 7.173565644 7.462004 7.330853745 6.921749581 7.904163335 7.093956358 7.075884958 7.270114135 154154805 phoB Stress Phosphate limitation Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 7.370641972 7.663045951 119391489 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.492876099 8.771158934 8.306699459 8.402532399 8.075174817 8.417943105 8.771834488 8.504614236 8.542776435 8.351406261 8.457902485 126648529 catB Organic Remediation Aromatics BTEX and related aromatics Algoriphagus sp. PR1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cyclobacteriaceae;genus:Algoriphagus; 8.141634339 8.014620135 7.522584414 8.314181735 7.096646467 7.485448856 7.326788862 7.887147021 7.44205269 167588045 HBH Organic Remediation Aromatics BTEX and related aromatics Burkholderia ubonensis Bu 8.525240103 8.507768848 8.777493505 8.700375846 8.581977192 8.543771823 8.476181488 8.629042165 8.293813978 8.778423542 8.950393709 8.476334668 114737965 AceA Carbon cycling Carbon degradation others Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 8.497130416 8.478823387 8.296660573 8.078093875 7.878092456 7.816526177 7.831228926 8.146779249 8.139008837 7.990849464 8.090378531 56409824 gyrB other category gyrB Vibrio aestuarianus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.991865511 7.946155745 7.944022627 7.649360441 7.733187364 7.027653979 7.260482291 7.494518172 7.518614505 7.527837164 7.42015195 262201611 hly virulence hemolysin Gordonia bronchialis DSM 43247 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 8.761546733 8.985341239 9.040744327 8.616622439 8.69971304 8.499519503 8.561385574 8.91958424 8.831381179 8.798661812 8.607413335 8.694072467 119538987 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.83146374 8.988968856 8.945751391 8.813577179 8.842024574 8.614647167 8.592083777 8.724512762 9.109981505 9.018484245 8.823166013 190014188 silC Metal Resistance Silver Stenotrophomonas maltophilia K279a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 10.25363048 10.14389337 10.33482734 9.688839433 9.876973697 9.688061951 10.47543272 9.869887526 10.59600658 9.699233053 9.568389313 9.903947431 115371535 phenol_oxidase Carbon cycling Carbon degradation Lignin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 8.579662045 8.619105705 8.948842058 8.311984775 8.236601151 8.212976906 8.374442436 8.506898489 8.749711784 8.361777423 8.089804025 8.397905244 218276006 cellobiase Carbon cycling Carbon degradation Cellulose Roseburia intestinalis L1-82 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia intestinalis; 8.505776776 8.566289483 8.706284982 8.407818404 8.082082289 8.128873668 7.551535026 7.487321591 7.979054872 7.975633038 8.134266427 158421702 AceB Carbon cycling Carbon degradation others Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 8.090788215 8.321697966 7.941445322 7.677202343 8.335885002 8.737752755 8.427574346 8.06017953 8.293213816 8.2737001 119944251 pilin virulence pilin Psychromonas ingrahamii 37 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas;species:Psychromonas ingrahamii; 9.089575439 9.165406965 9.108756626 8.510543758 8.499453762 8.394567129 8.055498894 8.223824428 8.320620391 8.457152412 8.223877242 8.725289715 87199889 vanA Carbon cycling Carbon degradation Others Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 9.406292426 9.590314848 9.555453964 8.993751493 8.653910691 8.799519387 8.813876799 8.888000939 8.780932194 8.729403132 8.669229745 9.083536779 85818447 linB Organic Remediation Pesticides related compound Dokdonia donghaensis MED134 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Dokdonia;species:Dokdonia donghaensis; 8.445191772 8.214311601 7.912468312 7.840626531 7.72602482 7.704716967 7.751285494 8.12464871 7.502680112 7.620420001 8.064184556 229323213 P450 Energy process Energy process Rhodococcus erythropolis SK121 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 8.371597541 8.133294254 8.454401224 7.516674885 7.590455787 7.63319377 7.117671567 7.077183836 7.887931293 7.437215818 7.463087102 7.66998504 78219719 narI Stress Oxygen limitation Desulfovibrio desulfuricans subsp. desulfuricans str. G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 8.158028051 8.256086251 8.240434771 7.641800732 7.925751283 7.973311648 8.059340448 7.118516502 7.444272542 7.886416182 72121713 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.136691068 8.224068012 8.222807501 8.144456613 8.273322419 8.075482975 7.981859455 8.319661903 8.079172568 8.12017465 7.764226479 47573497 mauAB Organic Remediation Herbicides related compound Rubrivivax gelatinosus PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 8.951295959 8.839431541 8.794691591 8.290573997 8.542449213 8.625741374 9.20507184 7.97651632 9.031198802 8.364645942 8.242190364 8.363955223 238794435 proW Stress Osmotic stress Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 8.278664867 8.163983107 7.789119907 7.569346816 7.694275289 7.885551018 7.887183803 8.366299222 7.798955995 7.865563954 8.236058314 29828559 atzB Organic Remediation Herbicides related compound Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 8.525866512 8.876786425 8.419270114 8.422748441 8.590936431 8.636973445 8.508162511 8.680052081 8.438751582 8.631891217 8.627495888 26278888 narG Nitrogen Denitrification uncultured bacterium 9.141527044 9.553330886 9.470267856 9.27692625 9.199419295 9.052728689 9.381773416 9.580429013 9.224973405 9.63385395 9.483786301 9.369181031 161163133 pilin virulence pilin Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 8.773924106 8.753940843 8.552559541 8.232570158 8.358438618 8.42672276 8.298129436 8.417892135 8.511850666 8.365891381 8.355941198 239908521 pstA Stress Phosphate limitation Desulfovibrio magneticus RS-1 8.66184648 9.115798373 8.762024327 8.941779763 8.795628943 8.660325229 9.020821937 8.778196126 9.058476421 8.942432732 8.808286649 8.792547313 146410922 exaA Organic Remediation Chlorinated solvents Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.636249463 8.796971445 8.804091609 8.116828614 8.245498011 8.23151538 8.258402404 7.954768657 8.391567913 8.146845569 7.96872882 8.397390121 241762769 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax delafieldii; 9.059285076 9.024166779 8.861562405 8.717284131 8.806880108 8.575671937 8.859209144 8.692374766 8.765661128 8.644840392 8.775983324 8.503058079 239906748 sigma_32 Stress Sigma factors Desulfovibrio magneticus RS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio magneticus; 8.191764954 8.261401463 8.238845062 8.519142159 8.520075232 8.542533091 8.361977198 8.500332908 8.530131352 8.591879002 8.49573659 8.242405402 110340821 pstB Stress Phosphate limitation Chlorobium ferrooxidans DSM 13031 8.305248614 8.446384512 7.808821416 7.659070185 7.677476952 8.176301008 8.027885391 7.709567168 7.785167119 7.906435234 74422173 ArsC Metal Resistance Arsenic Nitrobacter winogradskyi Nb-255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 8.384510006 8.129876416 8.227293137 7.85747334 7.722825777 7.879006762 7.973693231 7.779733236 8.042177142 7.909822038 8.014237085 7.852058422 260220990 phoB Stress Phosphate limitation Curvibacter putative symbiont of Hydra magnipapillata superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 8.97714812 9.290145116 8.683487455 8.734008658 8.95163805 9.225345473 9.579643533 9.24082787 8.831575728 8.921720109 9.192349628 8.84683015 197707358 ureC Nitrogen Ammonification Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 8.916720466 8.2427867 8.754166517 8.008316198 8.188696889 8.42359294 8.762793812 7.672084361 8.802844909 8.097499838 8.08243558 8.267706409 120562256 tutFDG Organic Remediation Aromatics BTEX and related aromatics Desulfovibrio vulgaris subsp. vulgaris DP4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 8.485728193 8.470707255 8.482392547 7.81468128 8.506396224 7.880314927 7.929296714 8.298159779 8.163883826 251845633 endochitinase Carbon cycling Carbon degradation Chitin Paenibacillus sp. oral taxon 786 str. D14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 8.951664175 9.227156796 9.186935034 8.491450109 9.347487851 9.512949673 9.064682735 9.59107982 8.919010141 9.042293518 9.324405016 241765603 pstB Stress Phosphate limitation Acidovorax delafieldii 2AN 8.604488836 9.107444579 8.734360392 7.746187764 8.364110605 8.217941483 8.900853859 8.947341517 8.484811942 8.585843614 8.499534176 8.264308898 218887324 fnr Stress Oxygen stress Desulfovibrio vulgaris str. 'Miyazaki F' 9.746804884 9.86300783 9.735438905 9.209335947 8.828648247 9.296948727 9.464601635 9.176316789 9.340474959 9.228008062 9.335370206 9.626671924 193226173 ChrA Metal Resistance Chromium Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 9.559330141 9.424319011 9.278197664 9.646250373 9.786500698 9.632387556 9.273798997 9.926469801 9.251700993 9.573631186 9.633439978 9.283110452 46581219 silC Metal Resistance Silver Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 9.057313385 9.01870471 8.934053781 8.547732564 8.620021923 8.743318377 8.916657696 8.460043426 9.19606637 9.009839036 8.971753402 8.971629522 33320075 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Cellulomonas fimi superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas; 9.18959532 9.455880558 9.382335196 8.529574541 8.706861759 8.925113238 9.098058058 8.449435545 8.976582585 8.620741747 8.63936548 8.90844465 83972390 nosZ Nitrogen Denitrification uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 8.481649273 8.416431684 8.191888542 8.087063107 8.041377296 7.685617886 7.70368231 8.130482578 8.039344294 8.097476387 7.946696457 148271916 katE Stress Oxygen stress Clavibacter michiganensis subsp. michiganensis NCPPB 382 8.791019431 8.644149256 8.76189838 8.535405534 8.565059473 8.399978786 8.358930792 8.76228937 8.366177488 8.751447146 8.703526193 8.821393758 119860575 nitA Organic Remediation Aromatics Other aromatics Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 9.610581335 9.203407236 9.386424885 9.893313376 9.598673009 9.238934933 10.06084239 9.902169367 9.589046543 9.477362872 9.455566422 157323029 akbF Organic Remediation Aromatics BTEX and related aromatics Serratia proteamaculans 568 9.164325814 9.123557437 8.996893327 8.359084621 8.268881001 8.268001349 8.491486633 8.056474648 8.518023572 8.23493196 8.190174237 8.722886695 251775759 pstB Stress Phosphate limitation Geobacter sp. M21 8.531431887 8.277394274 8.107292248 7.842187011 7.855670105 7.916593889 8.168294059 7.63972312 8.720341563 7.837000176 7.827271854 7.699383354 82702940 obgE Stress Radiation stress Nitrosospira multiformis ATCC 25196 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira;species:Nitrosospira multiformis; 8.563970491 8.52903958 8.720023941 8.307467222 8.289967725 8.079417499 8.184769138 8.920678887 8.098967619 8.507514372 8.40770456 8.562711776 148260124 NADH_ubiquinone_oxidoreductase Bioleaching Electron transport Acidiphilium cryptum JF-5 8.396973035 8.217634301 8.182542834 7.82572386 8.633880751 8.883713928 8.219439724 8.779890865 8.266425755 8.352986207 8.288187848 192289468 CopA Metal Resistance Copper Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.32408166 8.147564153 8.307779125 8.089573991 7.778585425 7.671197617 8.073210987 8.412377778 7.936136741 7.696226035 7.906572684 151582326 cellobiase Carbon cycling Carbon degradation Cellulose Opitutaceae bacterium TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 8.714945836 8.641646689 8.672092193 8.667992196 8.674937956 8.571275205 8.372224767 8.946291454 8.494340369 8.53754833 8.519294085 8.564787682 94313516 ZntA Metal Resistance Zinc Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.177556301 7.949606179 8.274699561 8.262883284 7.707114394 8.340516207 7.912959511 8.440611072 8.290079647 8.137498203 7.969989358 193211708 narI Stress Oxygen limitation Chlorobaculum parvum NCIB 8327 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum parvum; 8.600327003 8.644327775 8.535611344 8.155812109 7.909844682 8.152319319 8.576610824 8.056515556 8.531205978 8.084435417 8.108356698 7.855776565 256680835 B_lactamase_A Antibiotic resistance Beta-lactamases Streptomyces sp. SPB78 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 9.930751089 9.814132058 9.855503418 9.606577633 9.450702707 9.506363007 10.04959058 9.597450784 10.10868502 9.517786793 9.389779897 9.308612022 121495550 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.811002517 7.37011389 7.401248665 7.350476092 6.95037551 7.367812269 227993173 ahpC Stress Oxygen stress Meiothermus ruber DSM 1279 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 8.952865049 8.882401345 8.872073758 8.597452123 8.500470201 8.204695204 8.604536032 8.758954273 8.656261546 8.895745667 8.755419684 8.693471095 89513030 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.666810424 8.63192946 8.740039904 8.33169647 8.24359467 8.142115042 8.213086853 8.274378162 8.217639062 8.261721185 8.095159945 8.322324335 91720252 FTHFS Carbon cycling Acetogenesis Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 9.283469125 9.439286969 9.486818678 9.110099683 9.131224365 9.054324254 8.698884339 8.67707028 8.893207309 9.169590897 9.215698198 9.155625031 171320372 iro virulence Burkholderia ambifaria MEX-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 8.616263789 8.449904306 8.313953331 8.512843942 8.43931104 7.860617024 8.264132031 8.507338585 8.363005798 8.574511123 8.282333628 8.378122303 159041230 cellobiase Carbon cycling Carbon degradation Cellulose Caldivirga maquilingensis IC-167 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Caldivirga;species:Caldivirga maquilingensis; 9.09863923 8.551298363 9.101630603 8.912952059 8.714341292 8.998697431 8.975994474 8.827012455 8.904268664 8.933346491 8.648612088 83816436 phoA Stress Phosphate limitation Salinibacter ruber DSM 13855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 8.810027263 8.968221836 8.565286298 8.745489139 9.290065801 9.43829848 9.043969267 9.453972491 9.145618218 9.190244675 9.362956997 8.855490583 217502822 mmoX Carbon cycling Methane Methane oxidation Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 8.73237027 8.323208456 8.850546943 8.650227266 8.312319388 8.643966805 8.773451799 8.515549499 8.497924771 8.231269044 139478507 mer Metal Resistance Mercury uncultured soil bacterium superkingdom:Bacteria; 8.162574637 8.277943735 8.457777358 7.506772825 7.925082533 8.256301507 8.376784781 7.508498995 8.660412666 8.112162266 8.311869351 7.829484323 146402525 PobA Organic Remediation Aromatics Aromatic carboxylic acid Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 8.92130075 8.783224578 8.824870943 8.224191669 7.956329903 8.007670347 7.717134794 7.90978308 8.26890917 7.892705177 7.987453553 8.156344423 95134900 sigma_70 Stress Sigma factors Desulfuromonas acetoxidans DSM 684 9.083113404 8.737988109 8.420910996 7.836432933 8.481704406 8.581852688 8.430614187 8.360950222 8.770973432 8.644822444 112359972 pstA Stress Phosphate limitation Campylobacter jejuni subsp. jejuni NCTC 11168 7.384237306 7.362466427 170776939 pstC Stress Phosphate limitation Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 9.294732789 8.875658691 9.066301668 8.415128108 8.522301865 8.314576598 8.119478636 8.212712616 8.311973667 8.285601912 8.072941872 8.440423645 254430393 sigma_70 Stress Sigma factors Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 9.785497624 9.092030347 9.709748077 9.396507041 9.379891117 9.142640132 9.163954329 9.205388632 9.087142817 9.160656907 9.354157634 9.33346411 16264574 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 8.080528505 8.16030672 7.412773373 6.969584114 7.634260427 7.730293343 7.533119204 7.660165735 7.431651826 7.703990416 194544080 ureC Nitrogen Ammonification Mycobacterium tuberculosis C superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 9.262163222 9.263591397 9.329992396 9.128483 9.033173631 8.92120319 8.882213014 8.981832485 9.014287041 8.996898094 9.003676882 9.191746747 148658661 SMR_antibiotics Antibiotic resistance transporter Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 9.265351756 9.49800284 9.613847271 8.774760481 8.741127152 9.211601695 9.236790016 8.906607854 9.115507774 9.211142627 9.101196942 9.425635681 159044397 scnABC Organic Remediation Others Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 9.248318737 9.036251465 8.604539276 9.153711467 9.308990047 9.270459986 8.862920714 9.563968234 8.940084629 9.276464788 9.184490848 9.485911835 84786970 AceA Carbon cycling Carbon degradation others Erythrobacter litoralis HTCC2594 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 8.525357585 8.788533814 9.063542386 9.09966312 8.734771362 8.729129521 9.269320383 8.811931084 9.014908921 8.936685936 8.956901723 211585111 chnB Organic Remediation Other Hydrocarbons Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 8.990796903 8.960271364 9.071295857 8.567542317 8.651639073 9.201708238 8.94086238 9.493987488 8.928757297 8.989695836 254521618 ABC_antibiotic_transporter Antibiotic resistance transporter Stenotrophomonas sp. SKA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 8.556756432 8.08716604 8.406926951 8.372686302 8.590666957 8.180146472 8.657408131 8.284149955 8.645306229 8.847979505 8.183457804 117985945 silC Metal Resistance Silver Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.40947987 7.990394118 7.632741654 8.175444726 8.046032587 8.368287754 8.028697501 7.706680536 7.850602916 13992710 dsrA Sulphur sulfite reductase Bilophila wadsworthia superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Bilophila; 8.822881388 8.648306343 8.503072888 8.518430077 8.721816648 8.769532887 8.689144005 9.144869813 8.669594887 9.002032374 8.964008646 8.944530724 86553911 clpC Stress Protein stress Synechococcus sp. JA-3-3Ab superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 10.72230138 10.59868377 10.63462861 10.07324926 10.2180727 10.15173888 10.13730806 10.04775739 10.413594 10.45965477 10.42325978 10.28661888 262206457 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 8.971294123 8.784078626 8.931772962 8.323746084 8.230288805 8.169022334 8.154115366 8.066910057 8.284713782 8.069942904 7.873389324 8.418869863 238921111 sigma_38 Stress Sigma factors Edwardsiella ictaluri 93-146 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella ictaluri; 8.522361524 8.567459595 7.804492344 7.787733647 8.049634082 8.303645468 7.881221643 8.284734796 7.741571852 7.606963351 7.631232261 71915395 pimF Organic Remediation Aromatics Aromatic carboxylic acid Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 8.211482541 7.96352525 7.998776639 7.400464573 7.773639499 7.951366378 7.594790398 8.127747456 7.604404321 7.71485496 7.68751888 89360675 phn Organic Remediation Herbicides related compound Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.405387558 8.695538179 8.224467092 8.006056891 8.140627964 8.456369769 8.663493304 8.597530762 8.62467465 8.675482357 8.92571444 8.819201904 94481140 nahA Organic Remediation Aromatics Polycyclic aromatics Sphingomonas sp. A4 9.01589512 8.85618428 8.918331237 8.78785803 8.636989938 8.505735331 8.210438331 8.417333295 8.486536747 8.563471993 8.575290821 8.604899516 39935125 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Rhodopseudomonas palustris CGA009 9.875870444 9.815235972 9.555658406 8.335086425 8.646039117 9.277011986 9.692282662 8.686519889 9.742757332 8.868798593 8.997918507 8.540117015 259034095 rubisco Carbon cycling Carbon fixation Mesorhizobium opportunistum WSM2075 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 8.300092122 8.103485094 8.212205025 8.488425665 8.283024381 8.211527563 8.648296728 8.19066665 8.313771226 8.407173103 8.397861906 197703172 AceB Carbon cycling Carbon degradation others Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 8.493280527 8.560165951 8.501347861 7.991799884 7.852483753 7.903631369 8.161679679 8.375011654 8.387325036 8.405939685 8.418319027 8.38330055 121555369 tfdA Organic Remediation Aromatics Chlorinated aromatics Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 8.453918537 8.399991406 8.508687884 8.093950498 7.705306751 7.672089012 8.08848573 7.835705188 8.376031612 7.648992641 7.449412511 7.777924545 54023924 nmoA Organic Remediation Aromatics Nitoaromatics Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 8.341823516 8.178668649 8.333502951 8.037712611 8.181717099 8.020462194 8.047060534 8.130431867 8.123862894 8.160262304 8.043861241 7.914462995 160947040 Van Antibiotic resistance other Enterococcus faecalis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus; 8.192415207 7.960440981 7.104045929 6.868751554 6.529495027 7.397705012 70984443 pheA Organic Remediation Aromatics Other aromatics Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 8.218521437 8.460364574 8.038256071 8.418322424 8.487186696 8.216128729 8.859445183 8.659003851 8.693537274 8.489576081 8.650978187 8.398249389 91798420 rubisco Carbon cycling Carbon fixation Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 8.961874077 8.510350522 8.65294593 7.947196574 8.06446471 8.158043589 7.947053968 7.789592312 8.150269992 8.057859298 8.147876973 29893077 alkJ Organic Remediation Other Hydrocarbons Rhodococcus ruber superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.272350934 8.489070373 8.460653409 7.865953128 7.787980004 7.986653296 7.594052974 7.66655403 7.982312284 7.803057419 8.019865965 7.964682925 88799843 pheA Organic Remediation Aromatics Other aromatics Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 8.591555316 8.193149881 8.549893297 8.117335992 7.830111483 8.132249499 8.081954159 8.204752154 8.323825204 8.303908043 7.599234557 5725214 mannanase Carbon cycling Carbon degradation Hemicellulose Clostridium thermocellum superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 9.393571567 9.431894611 9.51015416 8.976278596 8.683355157 8.916142028 8.600662267 8.595588647 8.501611293 8.633397529 8.682113573 8.941056195 33320448 dsrB Sulphur sulfite reductase Desulfacinum infernum superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Desulfacinum; 9.12770036 8.995440445 8.277245571 8.532516455 8.768662588 9.05136919 7.924989669 8.872599224 8.688905978 8.396936063 8.803507847 134034460 mer Metal Resistance Mercury Streptomyces sp. Is-BDOE1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.076353268 8.137895879 8.315246372 8.001699547 8.019567962 7.876182988 8.016776823 8.250480494 8.259456922 8.284270323 8.235178545 8.097726547 209874022 pstB Stress Phosphate limitation Oligotropha carboxidovorans OM5 9.236143677 8.473049576 8.639035775 9.174751284 8.515022537 8.143776934 8.771223837 8.883790173 8.995520643 8.731595871 8.739846416 8.26754189 116693468 limEH Carbon cycling Carbon degradation Others Burkholderia cenocepacia HI2424 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 8.044761507 8.222460024 8.049287439 8.239682183 8.0051816 8.144364294 8.188002541 8.173964958 7.740777342 56677633 sox Sulphur Sulphur oxidation Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 8.036777651 8.115581053 7.820944481 7.853175595 8.222958562 8.481683928 8.185319679 8.134239872 8.071273152 91693462 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.291451575 8.296574288 7.694837053 7.761975937 7.722348074 7.942154881 7.733217384 7.886666777 7.644849922 8.000743746 83851228 SMR_antibiotics Antibiotic resistance transporter Oceanicaulis alexandrii HTCC2633 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis;species:Oceanicaulis alexandrii; 8.198959785 8.03199176 8.004006174 7.880913061 7.842391388 7.844875027 8.076528419 7.847302105 7.980963157 8.049692143 7.774577588 197748422 xylA Carbon cycling Carbon degradation Hemicellulose Mannheimia haemolytica PHL213 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Mannheimia;species:Mannheimia haemolytica; 9.062873752 9.167034631 9.186178943 8.717542749 8.216176856 8.337938141 7.939087956 7.974277736 8.285977277 8.16005797 8.361075045 8.619654261 169817213 silC Metal Resistance Silver Burkholderia cenocepacia MC0-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 8.261490159 8.124836494 7.256902456 7.977887661 7.522339194 7.815887469 7.476525768 7.695884752 7.779929498 7.672714163 46122635 katE Stress Oxygen stress Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 8.125761769 8.250888154 8.014674592 8.035806389 7.662087898 7.521437894 7.30622348 7.361778591 7.847120593 7.612092011 7.087711574 7.90698556 89358829 nmoA Organic Remediation Aromatics Nitoaromatics Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.929034693 8.49125702 8.346884582 8.142824226 8.326824005 8.496200551 8.897391015 8.659000119 8.527095359 8.368084492 8.503079318 8.332443861 56692281 nifH Nitrogen Nitrogen fixation Heliorestis baculata superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Heliobacteriaceae;genus:Heliorestis; 7.109400156 7.0623501 7.118897132 6.825039925 6.661700914 7.342707372 158331685 nmoA Organic Remediation Aromatics Nitoaromatics Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 9.766331596 9.530595123 9.873861836 8.893826768 9.187862583 9.108623051 9.311984036 8.559828919 9.456815055 8.839967002 9.216098745 8.886664221 239821735 fnr Stress Oxygen stress Ochrobactrum intermedium LMG 3301 9.099173221 9.335427245 9.153961 8.891565734 9.204587793 9.31433759 8.859100085 9.202201116 9.16341732 8.877706243 9.113058177 9.088907163 70732240 exaA Organic Remediation Chlorinated solvents Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.367470034 8.51752235 8.452449262 8.432229964 8.307279712 8.146154171 8.401358876 8.160312296 8.527276381 8.010425468 8.128413645 8.282301071 27349176 tftH Organic Remediation Aromatics Chlorinated aromatics Bradyrhizobium japonicum USDA 110 8.187453794 8.375093179 8.294817885 8.129324498 8.328464496 8.153200353 7.804047107 8.293583713 8.008604792 8.143357491 8.153932817 8.552433931 260938724 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Vibrio orientalis CIP 102891 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 9.832198616 9.70266934 9.935634297 9.6916868 9.22263227 9.145788267 9.546084314 10.09306504 9.124923699 9.67884571 9.525462716 9.377943888 254496707 ahpC Stress Oxygen stress Legionella drancourtii LLAP12 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella;species:Legionella drancourtii; 9.054387766 8.815738625 8.786665235 8.315285546 8.28326333 8.355599066 8.126948332 8.149530848 8.496984176 8.155254674 8.318033948 8.48572748 145607671 nagI Organic Remediation Aromatics Aromatic carboxylic acid Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 8.958340126 8.754212749 9.139517313 8.607652488 8.482792938 8.530686375 8.156431618 8.387419711 8.306669454 8.553691367 8.631276113 8.60212363 83952019 bclA Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 8.676751959 8.683178236 8.649497322 8.005517388 8.619136153 8.600552475 8.740878405 7.540339102 8.877269381 7.746744276 8.269485299 7.750609631 282888306 sigma_24 Stress Sigma factors Burkholderia sp. CCGE1001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 10.07170197 9.888039922 10.04671923 9.562839413 9.572590782 9.224611992 9.865925175 10.03753638 9.819208315 9.856418911 9.483446816 9.797438728 119871371 nhh Organic Remediation Aromatics Nitoaromatics Mycobacterium sp. KMS 8.418701754 8.582762832 8.566587963 8.157208207 7.986573958 8.091403797 7.9814418 7.912291772 8.096519853 8.024505922 7.91947389 8.218282139 270334090 sigma_70 Stress Sigma factors Prevotella bergensis DSM 17361 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bergensis; 8.257208288 8.249580793 8.280455112 7.841188913 8.191489182 8.248263217 8.561963811 8.046524833 256781470 iro virulence Streptomyces hygroscopicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces hygroscopicus; 9.182265229 9.319413476 9.309110367 9.532178622 9.545130446 9.719094945 9.722871538 9.492144488 9.979915095 10.02662111 9.711338941 56962754 alkH Organic Remediation Other Hydrocarbons Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 8.358950907 7.976627036 8.214166416 7.575286845 7.559313048 7.617840326 7.636066745 7.485869865 7.978236454 7.845721652 7.709698895 8.048167425 214031014 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8.925120062 8.875691737 9.028644369 8.626317579 8.90183906 8.960792356 8.453129768 8.922169552 8.769182162 9.051747815 9.123594293 8.940068789 260620272 pstB Stress Phosphate limitation Bacteroides finegoldii DSM 17565 8.060984425 7.887313485 7.303246659 7.014156499 170027509 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 9.135695209 9.24347666 9.408590153 8.593907351 8.75835718 8.966443019 8.611806792 8.289330906 8.610902868 8.788301771 8.901742581 188592332 pimF Organic Remediation Aromatics Aromatic carboxylic acid Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 8.651717901 8.689874874 8.400943429 9.177259857 9.121662409 9.206614548 8.64281897 9.351680231 8.627851991 9.110551694 9.336428114 8.902958679 153887831 pcaG Organic Remediation Aromatics Other aromatics Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.422076577 8.269765217 8.37681227 8.306383238 8.222158324 8.380840965 8.729000926 8.962795263 8.627091861 8.847516976 8.616932632 8.756155859 37651634 terminase_large_subunit Bacteria phage REPLICATION Aeromonas phage 44RR2.8t order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 8.320973742 8.223659781 8.146192999 7.842572242 7.705456544 7.970883872 7.999451617 7.9851094 7.804667054 7.855333066 7.831363264 238019592 ppk Phosphorus Phosphorus utilization Veillonella dispar ATCC 17748 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Veillonella;species:Veillonella dispar; 7.546012942 7.541317136 7.461707113 7.20898878 7.314983673 7.326689001 7.258164126 7.282110502 163756781 silP Metal Resistance Silver Kordia algicida OT-1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Kordia;species:Kordia algicida; 8.163935651 8.102595646 8.274972859 7.160378309 6.979794262 7.141948203 7.304099215 6.989867304 7.457305886 227493607 pstA Stress Phosphate limitation Mobiluncus curtisii ATCC 43063 8.388172745 8.352598649 8.99142506 8.848139096 8.79571058 8.361974119 8.631852345 9.126006713 8.626130124 9.08850448 8.561129339 89143168 gyrB other category gyrB Microbacterium aerolatum superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium; 8.384257541 8.409720975 8.179954137 8.101196916 8.039256105 7.925361827 8.412240385 8.313658479 8.523151141 8.617492384 8.429159607 227540962 clpC Stress Protein stress Corynebacterium glucuronolyticum ATCC 51866 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glucuronolyticum; 8.745080331 8.651542802 8.404569258 8.352194876 8.827000793 8.527087994 8.517584201 8.873981001 8.769275604 8.781598648 8.834736024 8.776251641 225207696 cda Carbon cycling Carbon degradation Starch Coprococcus comes ATCC 27758 8.765515052 8.384781506 8.625566194 7.995799367 8.046163907 7.885904727 8.272697681 7.57044285 213968438 gyrB other category gyrB Pseudomonas syringae pv. tomato T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 8.214372403 8.552212144 8.298633315 8.207997292 8.231167197 7.935613804 8.123768018 8.260982551 8.057312755 8.195410121 7.984425254 7.854557727 156523009 APS_AprA Sulphur adenylylsulfate reductase uncultured bacterium superkingdom:Bacteria; 9.379604122 9.499193012 9.512791262 8.874448175 8.81975897 8.734939045 8.816679971 8.666975022 8.607851613 8.531337012 8.435272223 8.963320428 227195195 hly virulence hemolysin Lactobacillus ruminis ATCC 25644 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus ruminis; 8.43490616 8.619642533 8.71468236 8.241671816 8.408029484 8.042169519 7.419221882 7.617630096 8.185489015 8.13941565 8.23774964 125718981 clpC Stress Protein stress Streptococcus sanguinis SK36 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus sanguinis; 8.952400202 8.822965859 9.04464148 8.348183482 8.287884812 8.245176662 8.139274282 7.972629588 8.18557981 8.083652721 7.982185992 8.341582186 26990249 4HBH Organic Remediation Aromatics BTEX and related aromatics Pseudomonas putida KT2440 8.333395273 8.265785383 8.412505619 8.818095242 8.750347968 8.610040141 8.822843102 9.131782612 8.617893648 9.140415579 9.020816209 9.152684795 91699573 dehH109 Organic Remediation Chlorinated solvents Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 9.306219 8.747339101 8.625914029 9.308302303 8.983056547 8.663237609 9.155304164 9.226562657 8.974116597 8.911404725 8.81226563 8.710078745 38199159 sigma_24 Stress Sigma factors Corynebacterium diphtheriae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium; 9.40370261 9.12182788 9.134368266 9.323684807 8.915914165 8.724710112 9.258713063 9.553794633 9.478846202 9.38289979 9.220918154 9.398830743 242121222 obgE Stress Radiation stress Desulfovibrio salexigens DSM 2638 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio salexigens; 7.359158781 7.341894513 6.98161626 6.594512675 7.703627591 7.184950525 7.055620999 7.433077541 240171700 narI Stress Oxygen limitation Mycobacterium kansasii ATCC 12478 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 9.564698633 10.00539122 9.687719007 9.001677068 9.642936144 9.742222912 9.732253376 10.21150443 9.328662936 9.487985186 9.500613575 211997235 DNA_ligase Bacteria phage REPLICATION Kluyvera phage Kvp1 order:Caudovirales;family:Podoviridae;genus:T7-like viruses; 8.638587812 8.533064397 8.602496169 8.093881271 8.100350242 8.094095268 7.638022167 7.898625166 8.026700951 7.983676585 7.867372629 8.294187026 219865370 pilin virulence pilin Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 9.513334097 9.343154119 9.590533173 8.775643405 8.79640073 8.80714808 8.631209566 8.43033966 8.567175831 8.451895286 9.06609794 1255460 nifH Nitrogen Nitrogen fixation unidentified bacterium superkingdom:Bacteria; 9.445298896 9.568169252 9.655219347 8.930115818 8.894332578 8.751295851 8.726154484 8.672577042 8.678182044 8.781150398 8.750969709 9.114078531 163846288 carA Organic Remediation Aromatics Heterocyclic aromatics Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 8.935343328 8.686058609 8.874310037 8.404428514 8.287616598 8.293808133 8.253500625 8.226607484 8.028984877 8.228987397 8.603807093 169007681 atzD Organic Remediation Herbicides related compound Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.839329803 8.076880288 7.786193072 7.473071738 7.018579452 7.460881816 7.366978491 7.482923534 7.503271428 7.176064361 120406039 pstC Stress Phosphate limitation Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.22781266 8.219537796 8.479444414 8.199492448 8.294222952 8.551474139 8.041097661 8.447532587 8.19841722 8.089020094 8.573115268 8.162351905 89885987 endolysin_transglycosylase Bacteria phage LYSIS Sodalis phage phiSG1 8.492730482 8.586451444 8.452634071 7.814172971 8.111016482 8.525079289 8.218021742 8.710284031 8.097536089 7.915444534 7.891826571 23867886 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 8.519537681 8.394972538 8.270791532 8.534572193 8.169291252 7.979604843 8.459066186 8.108164206 8.540577073 8.331047344 8.041633188 7.984864533 124262216 phn Organic Remediation Herbicides related compound Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 8.908911662 8.662628056 8.649034672 9.227980572 8.770093982 8.310206435 8.705750967 8.879926543 8.711941153 8.676557794 8.806253706 8.17581428 59711180 ChrA Metal Resistance Chromium Vibrio fischeri ES114 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Vibrio fischeri; 8.335669995 8.074612835 8.528026403 7.888488136 7.911364316 7.860022678 7.603185744 7.279704768 7.981123771 7.321383204 7.373200463 7.861007361 209538313 fnr Stress Oxygen stress Rhizobium leguminosarum bv. trifolii WSM2304 8.744086574 8.578634932 8.698215821 8.281346446 8.186230617 8.050462914 7.620270824 7.694448794 8.341682975 7.995790756 7.762110546 8.109284993 218550493 arcB Stress Oxygen limitation Escherichia fergusonii ATCC 35469 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia fergusonii; 7.990302153 8.18686803 7.304790002 7.160104709 7.48572546 7.468518924 7.349947214 7.773494474 7.259765849 7.219559474 7.361616348 226091227 sigma_24 Stress Sigma factors Gemmatimonas aurantiaca T-27 superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 8.314390398 8.463582141 8.005698921 8.116930667 7.921685021 8.461177282 8.332610384 8.810313786 8.396953418 8.313278326 8.334175846 118424359 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.492439142 8.291142988 7.806539814 7.948373026 8.075431721 7.977492908 7.917128624 8.347893989 7.761844327 8.093282682 7.822697282 52425649 obgE Stress Radiation stress Mannheimia succiniciproducens MBEL55E superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Basfia;species:Mannheimia succiniciproducens; 8.602395587 8.533835518 8.194953091 8.407674158 7.981497385 8.280550063 8.410670871 8.246046871 8.175511643 8.305584439 283102101 srt virulence surface protein Bifidobacterium dentium Bd1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium dentium; 9.743039242 9.972637375 10.1881424 9.633662374 9.773441697 9.208223953 9.649340496 10.24846837 9.966196301 10.0380742 9.852511184 10.09248359 84358870 PobA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 8.898343003 8.582921003 8.365221219 8.867619665 8.726543965 8.480118575 8.77035065 8.955283072 8.879142097 8.69965523 8.612265253 8.658576327 171910769 xylA Carbon cycling Carbon degradation Hemicellulose Verrucomicrobium spinosum DSM 4136 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Verrucomicrobium;species:Verrucomicrobium spinosum; 7.156724653 7.423600483 7.469364698 7.355047802 7.312524231 7.548603916 7.241689001 7.518562507 7.785157197 27542563 ChrA Metal Resistance Chromium Acetobacter aceti superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter; 8.451796638 8.256884242 8.451850608 8.002097816 8.112852971 7.711637192 7.580808386 8.050995941 8.323926396 8.042170091 8.115335875 170741858 BchY other category chlorophyllide reductase Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 8.815455974 8.707037739 8.81271678 8.319938237 8.306783196 8.237887595 8.496418725 7.731724896 8.154467293 8.253861233 8.112105971 118705770 mauAB Organic Remediation Herbicides related compound Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 9.198926637 9.326828696 9.444477523 8.82950844 8.814917681 8.532459204 8.953557594 8.343312271 9.049039031 8.815689767 8.965045795 8.875865551 145282461 pstB Stress Phosphate limitation Pyrobaculum arsenaticum DSM 13514 9.253050726 9.194008199 9.210003994 8.618744629 7.933841368 8.627776132 8.645856829 8.287671815 8.42611226 8.362498107 8.587331884 86555596 ppx Phosphorus Phosphorus utilization Synechococcus sp. JA-3-3Ab superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 9.127014085 9.539745237 9.570159937 8.720937954 8.790972347 8.971148424 9.560030563 9.018845184 9.521404656 8.858883437 8.724811801 8.59753864 195931875 Catechol Organic Remediation Aromatics Other aromatics Gordonia hydrophobica superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 8.153528928 8.282781362 8.217288921 8.243028982 8.17842995 7.777287351 7.902652339 8.460878544 8.34264937 8.169616195 8.203628246 8.32817655 150397331 glnA Stress Nitrogen limitation Sinorhizobium medicae WSM419 8.690808203 8.269540189 8.580938214 8.053572267 7.814088153 8.279084433 8.36709896 8.187273677 8.03383717 7.883582528 114188523 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 9.292804334 9.137058344 9.284578917 8.258541565 8.165453209 8.291609321 8.155468677 7.864368873 8.373195923 7.994372937 8.124674214 8.62522003 95111170 silC Metal Resistance Silver Pseudomonas superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae; 8.408842773 8.67736371 7.947146963 8.426443615 8.647375467 7.55668829 7.820517207 7.707990943 8.352293363 209966219 SMR_antibiotics Antibiotic resistance transporter Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 8.389922889 8.373042781 8.271814747 7.924667501 8.006784243 7.590788031 7.757438931 8.018235688 8.220541726 7.82202257 7.796622584 7.911584797 145219222 BchY other category chlorophyllide reductase Prosthecochloris vibrioformis DSM 265 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeovibrioides; 8.749583902 8.530127343 8.636297022 8.577782613 8.561473265 8.177902663 8.020348288 8.037316321 8.550797536 8.287870278 8.375303869 8.086228766 121556154 nahA Organic Remediation Aromatics Polycyclic aromatics Verminephrobacter eiseniae EF01-2 8.416364024 8.176970514 8.321616474 8.092350396 8.15522308 8.218696259 7.697564716 8.066648917 8.015380564 7.95934241 7.877151969 8.198720369 85773453 TerC Metal Resistance Tellurium Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 8.404486532 8.455769799 8.562002419 8.441593703 8.301739515 8.022979535 8.286973414 8.874577146 8.489941878 8.383049687 8.207117655 8.442474701 88184083 endochitinase Carbon cycling Carbon degradation Chitin Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 8.634881694 8.505320699 8.413526409 8.52337827 8.427272481 8.358572817 8.318760855 8.565925758 8.39131862 8.297507209 8.364513242 8.156620614 284057489 obgE Stress Radiation stress Listeria monocytogenes 08-5578 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria monocytogenes; 8.178620252 8.324861371 7.012391959 7.132035616 7.323320124 6.853260584 7.366767836 55229181 merP Metal Resistance Mercury Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 9.513669359 9.435612459 9.456883829 8.996793308 8.83420353 8.557792541 8.422502325 8.678874287 8.532177516 8.6552188 8.576069506 8.767271547 163793897 sigma_24 Stress Sigma factors alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 7.581162669 7.452418146 7.420618959 7.142514559 7.072192814 7.781349708 7.256828895 7.242502175 7.150605622 119898248 akbD Organic Remediation Aromatics BTEX and related aromatics Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 9.157098937 9.198537603 9.108688134 8.491657344 8.534626834 8.577273366 8.640659833 8.598391061 8.559653064 8.792814658 8.921959598 8.598424597 260767300 pilin virulence pilin Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 8.98609016 8.83697596 8.844044068 8.216712125 8.253958589 8.307607955 8.005572573 7.74929127 8.368381457 7.87972661 7.890900562 8.188564918 220710356 sigma_32 Stress Sigma factors Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.061906047 8.19106548 8.236608685 7.491579619 7.293503795 7.840786395 7.396792543 7.280655423 8.102167046 7.15398153 7.331511231 262194709 endochitinase Carbon cycling Carbon degradation Chitin Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Haliangiaceae;genus:Haliangium;species:Haliangium ochraceum; 8.373540985 8.393956577 8.775807013 8.457265669 8.174806712 8.018564872 8.258493641 8.661908462 8.5283115 8.636337792 8.447228521 8.684009417 78102111 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 9.374025759 9.163008333 9.519126592 8.7445551 8.499306415 8.501114437 8.358962519 8.349555995 8.251702795 8.392404167 8.221556115 8.757262055 257778897 pstA Stress Phosphate limitation Desulfotomaculum acetoxidans DSM 771 9.246020522 9.197610782 9.312531137 8.687628797 8.591383544 8.615750226 8.324911297 8.42049858 8.38378404 8.435045235 8.510116432 8.875188808 152969414 tutFDG Organic Remediation Aromatics BTEX and related aromatics Klebsiella pneumoniae subsp. pneumoniae MGH 78578 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 8.576102813 8.436451666 8.710813278 8.315557602 8.098831525 8.52342484 8.517548665 8.097534601 8.304762124 8.359376258 8.039891246 226094489 fnr Stress Oxygen stress Brevibacillus brevis NBRC 100599 7.33964358 7.331688585 7.480579666 7.2083204 7.233366953 7.790857776 7.507969747 7.436342207 7.511079415 158338781 dnaK Stress Heat shock Acaryochloris marina MBIC11017 8.383156762 8.237299857 8.670416224 7.819718393 7.757895738 7.853705915 8.128292251 7.580223402 8.064736461 7.631345438 7.672863006 7.756930192 98977240 fnr Stress Oxygen stress Sphingopyxis alaskensis RB2256 9.468617395 9.564705151 9.475625495 8.914544749 9.165513576 9.295238622 9.086260225 9.338416892 9.267124126 8.944146047 9.344500147 9.104175226 94314518 katE Stress Oxygen stress Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.000625606 8.347999978 8.072347056 8.251670027 8.108838735 7.968386289 8.105755238 8.247213785 8.389567947 8.428950082 8.13097089 8.389685121 218764219 atzA Organic Remediation Herbicides related compound Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 8.373148957 8.170751093 8.390866623 7.8923379 7.928608733 7.986206512 7.699260379 8.128672398 7.860856079 7.602883433 7.896566679 7.98854832 167730276 gyrB other category gyrB Candidatus Cloacamonas acidaminovorans superkingdom:Bacteria;genus:Candidatus Cloacamonas; 8.170322507 8.043476198 219680534 rd Organic Remediation Chlorinated solvents gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 9.109278286 9.134732776 9.163066208 8.52685485 8.456499974 8.454716123 8.304727166 8.306190821 8.417329396 8.351755534 8.686325411 148498414 tfdA Organic Remediation Aromatics Chlorinated aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.740335328 8.744570945 8.962543252 8.966055483 9.020954884 8.819758861 8.675459322 9.157415431 8.732659987 8.964650744 8.841215541 9.119438022 260552704 pstB Stress Phosphate limitation Lactobacillus fermentum 28-3-CHN 8.221274347 8.042386826 7.608882931 7.485745961 7.386037905 7.34696066 7.08250582 7.657209471 7.485699209 7.188695374 7.427055523 90422367 CODH Carbon cycling Carbon fixation Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 10.24039069 9.963236415 8.693610056 8.95439478 8.964214485 8.419930522 8.999929343 169292137 ChrA Metal Resistance Chromium Clostridium spiroforme DSM 1552 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichi;order:Erysipelotrichales;family:Erysipelotrichaceae;species:Clostridium spiroforme; 9.133945393 8.713604779 9.117928074 8.273515939 8.226175431 8.142124535 7.533667512 7.382058961 7.919602439 7.964850967 8.219686433 119899970 mhpA Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 7.782175735 7.942070096 7.618002177 7.592601629 7.674736958 7.851757294 7.621222361 7.532548172 7.377434152 197779364 pcc Carbon cycling Carbon fixation Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 10.34378973 10.37745515 10.46506948 9.745968237 9.84696133 9.819631668 10.27279392 9.699440877 10.49803517 9.70853045 9.739812367 9.994065747 85060079 katE Stress Oxygen stress Sodalis glossinidius str. 'morsitans' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Sodalis;species:Sodalis glossinidius; 8.625183812 8.211929353 8.34250002 8.080509137 7.953507376 7.936000386 7.775400482 7.801031183 3282336 rubisco Carbon cycling Carbon fixation Thiobacillus intermedius K12 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas;species:Thiomonas intermedia; 8.620288698 8.741168843 8.890694618 8.195613615 8.155402407 8.029028964 7.912222235 7.592791498 7.943456556 7.749751826 7.782011129 8.052320007 190997293 TerC Metal Resistance Tellurium Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 9.968668106 9.653428105 9.988567965 10.48976693 9.469275338 15606554 cydA Stress Oxygen limitation Aquifex aeolicus VF5 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Aquifex;species:Aquifex aeolicus; 8.886221347 8.931811081 8.982575863 8.441091885 8.052596884 8.124474217 7.943191138 7.789675816 8.268230137 8.075713996 7.921171568 8.407847562 118029486 ArsC Metal Resistance Arsenic Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.168489064 8.405695469 8.125654415 7.818976568 7.830637089 8.254782142 8.309651506 8.117703657 8.248017064 8.235996308 8.085082134 8.01115281 110334954 CopA Metal Resistance Copper Acidovorax sp. JS42 8.881027281 8.886556946 8.626905091 8.693213133 8.807189615 8.677953724 8.820790053 8.712685867 264672869 pstB Stress Phosphate limitation Caulobacter segnis ATCC 21756 10.39614541 9.903631284 9.983424373 10.3227549 10.21900931 9.929744596 10.39520596 10.1983488 10.03792798 10.27634649 10.27248708 10.29787314 115424466 gyrB other category gyrB Bordetella avium 197N 8.603974993 8.594751479 8.659564415 7.674843743 8.183805004 8.288229375 8.717703672 7.698104861 8.727353609 8.316468973 8.363099403 8.377786388 68201857 CODH Carbon cycling Carbon fixation Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 9.339365433 8.942276322 8.761539867 9.380279517 9.364071412 9.179364409 9.248318612 9.129830117 9.026247573 9.06765048 8.591261004 9.020971407 225730217 B_lactamase_C Antibiotic resistance Beta-lactamases Escherichia coli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 9.22015062 9.065602098 9.133745045 8.69422793 8.453349295 8.562713597 8.84852544 8.599674188 8.606954094 8.501865879 8.511666074 8.699764036 50843215 aclB Carbon cycling Carbon fixation Propionibacterium acnes KPA171202 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 8.135870544 8.171295534 8.159417181 7.075116501 7.572564954 7.559518646 7.919501715 6.998892195 7.946381702 7.358129761 7.438275058 7.651006966 111055738 nagG Organic Remediation Aromatics Aromatic carboxylic acid Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 8.548411472 8.498174143 8.826894472 8.267898617 8.383099336 8.116960563 8.068078206 8.055087278 8.071631369 8.267594763 8.050100491 8.226932265 111220106 MFS_antibiotic Antibiotic resistance transporter Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 9.380310477 9.014563304 9.42316536 8.622229712 8.763416152 8.798921283 8.744481758 8.062538967 9.088711094 8.784966112 8.691788278 8.897432916 115364375 catB Organic Remediation Aromatics BTEX and related aromatics Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 8.372382661 8.288647511 8.061634424 8.080746667 7.643651836 7.814035666 7.905324149 7.781502887 7.889889135 7.767281937 7.935346921 145569402 katE Stress Oxygen stress Pseudomonas stutzeri A1501 8.152653947 8.680639609 8.316820014 7.945954648 7.828157205 8.664402963 8.816679971 8.456483378 8.473512182 8.186030066 8.399860559 8.434234954 84043041 pcaG Organic Remediation Aromatics Other aromatics uncultured bacterium 8.379973839 8.603596907 8.231308688 8.237851701 8.325865765 8.04153121 8.595401421 8.293831899 8.619820027 8.108504187 8.326780878 7.963996518 120403311 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.370546704 8.322198983 8.662671882 8.165173146 8.04323799 8.072261595 7.969201342 7.856198878 8.244316638 7.789163837 7.869063168 8.087619967 41407741 AceA Carbon cycling Carbon degradation others Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 8.217339286 8.179284566 7.805827054 7.94555167 8.044222066 8.510063424 7.879687383 8.505231397 8.136442166 8.75652909 8.493195193 253577314 pstA Stress Phosphate limitation Paenibacillus sp. oral taxon 786 str. D14 8.216038356 8.208038058 229804627 hrcA Stress Heat shock Sphaerobacter thermophilus DSM 20745 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 8.735002712 8.912432002 8.910668551 8.964541213 9.014986481 8.675560786 9.052689545 9.155698176 8.893470953 9.031136956 8.826957994 8.888685584 119876704 TerC Metal Resistance Tellurium Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 8.31369387 8.480878382 8.665833694 7.954096783 7.871224151 8.055083924 7.631627814 7.524968019 8.474787892 7.814328506 7.817361088 7.95520791 269921944 vdh Carbon cycling Carbon degradation Others Brevundimonas subvibrioides ATCC 15264 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas;species:Brevundimonas subvibrioides; 8.579409859 8.289528343 7.8802063 8.343013262 8.254926797 8.204643529 8.41284237 8.338964516 8.352956542 8.337728533 8.163551031 255297070 clpC Stress Protein stress Corynebacterium tuberculostearicum SK141 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium tuberculostearicum; 8.645355027 8.904028026 8.866557077 8.593910383 8.557507884 8.42844245 8.455168874 8.711947517 8.554023489 8.658879803 8.413013529 8.706161319 145224488 clpC Stress Protein stress Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.931849815 9.035559656 9.248345895 8.668732879 8.566701701 8.865749923 9.233177556 8.654350197 9.188721351 8.846924249 8.731015972 8.872293228 148976131 proV Stress Osmotic stress Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 6.833760276 7.181417888 86739205 CopA Metal Resistance Copper Frankia sp. CcI3 8.20874008 8.565089708 7.778395337 7.617823023 7.758899696 7.877245399 7.370903235 7.653561101 7.442582661 7.634632483 262037059 amoA Nitrogen Nitrification superkingdom:Archaea; 8.605501296 8.68587026 8.222375568 8.196259052 8.710010168 8.616405807 9.080967736 8.856876418 9.09799872 9.176131838 9.280477476 9.251183806 170776765 TehB Metal Resistance Tellurium Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 8.490267769 8.234798323 8.297268536 8.23402996 7.856665748 8.128063053 7.907686719 7.980466071 8.071476476 7.95330207 258521124 pstB Stress Phosphate limitation Corynebacterium genitalium ATCC 33030 8.428076173 8.466560191 8.283231318 7.915082741 8.102507605 8.562595698 8.463421158 8.240911949 8.529746808 8.702818994 8.567883011 8.702131505 224282667 sigma_24 Stress Sigma factors Bifidobacterium bifidum NCIMB 41171 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium bifidum; 9.232049573 9.783136109 9.447895272 9.549633472 9.638695934 9.543861515 9.813934322 10.17896765 9.821369939 10.26370529 9.887477966 9.84010637 212711131 TerC Metal Resistance Tellurium Providencia alcalifaciens DSM 30120 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 9.580867734 9.529650461 9.555518223 9.080286854 9.203783914 9.183156326 9.339916954 9.602122751 9.06831882 9.599860248 9.533166313 9.621691966 34850127 gyrB other category gyrB Vibrio sp. Mel 6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.225690773 7.965251627 8.15995972 7.8599884 7.61004484 7.829334515 7.837335889 7.197635415 8.014517496 7.381368999 7.393852416 7.461594473 187727061 hly virulence hemolysin Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 9.252339325 8.694191879 8.685406642 9.168063049 9.072183184 9.121498808 8.541386788 9.147302025 8.868345001 9.279847056 9.440342227 8.885190441 182634412 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 8.521591483 7.862527206 8.374131745 7.818997478 7.641428945 7.669061797 7.545310706 7.921541233 7.700747139 7.798838705 7.848802706 7.837933987 209531807 fnr Stress Oxygen stress Gluconacetobacter diazotrophicus PAl 5 8.454986212 7.949296225 8.46527794 7.676665907 8.013258907 8.490880467 7.713339818 8.389402341 7.995586045 7.978375331 149922638 sigma_24 Stress Sigma factors Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 8.419407228 8.464290284 8.268768307 8.302943367 8.051525967 8.398818691 8.56078405 8.427923186 8.619742203 8.326042984 8.259923092 99030447 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 8.003216281 7.875037901 7.677819974 7.226949281 7.280945365 7.381688262 7.299715696 7.637505743 7.11344671 7.048281119 7.353515049 78060299 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 9.372466 9.004989099 9.292744616 8.662311557 8.591947679 8.523932109 8.887932727 8.171713012 8.800088529 8.657281961 8.656419795 8.504615964 28850814 nmoA Organic Remediation Aromatics Nitoaromatics Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 8.502489045 8.488416914 8.589228222 7.706741602 7.872566976 8.052660787 8.538871396 7.880068876 8.468964632 7.792568058 7.526261883 8.075852206 116073765 obgE Stress Radiation stress Synechococcus sp. RS9916 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.645611976 8.323790705 8.592492883 8.45217925 8.397414661 8.286344261 8.247674088 8.609895047 8.493498276 8.484093558 8.600342936 8.738910765 148271657 sigma_24 Stress Sigma factors Clavibacter michiganensis subsp. michiganensis NCPPB 382 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 8.808989856 8.857704346 8.792708254 8.990716332 9.143823871 8.853293606 8.943562235 9.411383892 8.876957158 9.11374561 9.1224797 8.951269537 206678880 pstB Stress Phosphate limitation Rhodobacterales bacterium HTCC2083 9.067923266 9.054956798 8.93732167 8.379730894 8.128274162 8.152271831 8.209657569 8.489995924 95111342 ArsC Metal Resistance Arsenic Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 8.571753613 8.818796726 8.418468784 8.762458403 8.685325575 8.804122791 8.622486712 8.397939172 8.768904642 8.292865087 77385071 pilin virulence pilin Pseudomonas fluorescens Pf0-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 9.394668747 8.726325834 8.62343211 9.156798452 9.204586852 8.999374886 9.170252438 8.947875578 8.78394945 9.075199112 9.211210418 8.855645021 221571957 obgE Stress Radiation stress Thermotoga neapolitana DSM 4359 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga;species:Thermotoga neapolitana; 8.186047447 8.173114611 7.326556984 7.33360798 7.489428908 7.11562695 6.611028734 7.625091734 7.338017136 7.194149733 7.492790661 73749324 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. CBDB1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 8.820015826 8.743784801 8.774698092 8.281743047 8.190112161 8.115203948 7.852305071 8.081472777 8.145016561 8.140864437 8.079961194 8.399442179 212636099 linB Organic Remediation Pesticides related compound Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 8.743809649 8.799598468 8.551882467 8.055222069 8.151161183 8.117164016 7.777928763 7.813744692 8.06608283 7.971520807 8.029825683 8.002205905 41395431 ArsC Metal Resistance Arsenic Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 8.154947721 8.116470254 7.814740951 7.709395548 7.943725412 7.756492528 7.60987214 7.567181669 7.229109695 7.702239889 227949207 pstB Stress Phosphate limitation Meiothermus ruber DSM 1279 8.904595761 8.656898105 8.308317099 8.974465511 8.856690575 8.98938855 8.520324699 9.303359896 8.639737245 8.731634328 9.001229132 8.570215493 21648295 dsrA Sulphur sulfite reductase Chlorobium tepidum TLS superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 8.41400329 8.675787748 8.147127452 8.086768129 8.147619934 7.950491391 8.558296938 8.2868953 8.467365639 8.277718629 8.601767188 161380982 phn Organic Remediation Herbicides related compound Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 9.269914751 9.0985722 9.33673248 8.886086751 8.65645724 8.517937765 8.831605756 8.419392411 9.195911817 8.51560441 8.602942245 8.699636245 108801972 pcc Carbon cycling Carbon fixation Mycobacterium sp. MCS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.38401873 7.358496557 22295073 nirA Nitrogen Assimilatory N reduction Thermosynechococcus elongatus BP-1 8.666032674 8.58675404 8.624818309 8.146988163 8.060776594 7.863527928 8.381485459 8.318005091 8.297439363 7.699629295 8.093547854 8.388328672 188030457 pap virulence adhesin Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 9.188809072 9.032706942 9.185895794 8.995184931 8.981422471 8.818228599 8.729003856 8.988418556 8.670271985 9.031843644 9.09590515 9.125799399 152968136 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 9.365912011 9.265319595 9.142382174 9.269364387 9.080599944 9.468953923 9.69778947 9.860941485 9.286028151 9.909954768 9.822346639 9.700151647 45774390 ureC Nitrogen Ammonification Nitrosospira sp. NpAV superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira; 8.865504159 9.039438834 8.903294398 8.446751411 8.379731833 8.443472372 8.0270847 8.031680216 8.467582727 8.197698789 8.299875839 8.560531942 115258988 sigma_32 Stress Sigma factors Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.540142948 8.300442066 8.471056759 7.88459769 7.655780694 8.109129712 8.337696557 7.369234004 8.411506792 7.591294347 7.681491931 7.595452977 223690792 ChrA Metal Resistance Chromium Desulfobacterium autotrophicum HRM2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium;species:Desulfobacterium autotrophicum; 8.964053089 8.928829569 9.178739688 8.440831281 8.51234465 8.371016273 8.345015816 8.374015974 8.350086388 8.538971588 8.25277186 8.619501116 148851265 ahpF Stress Oxygen stress Bacillus sp. SG-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 8.062901454 8.338593324 8.736621774 7.938149539 7.819857622 7.648822784 7.658859328 7.508554318 7.89004975 7.649038078 7.757564132 7.748284982 89209326 amyA Carbon cycling Carbon degradation Starch Bacillus weihenstephanensis KBAB4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus weihenstephanensis; 7.418231508 7.348740194 6.905933862 6.812431546 7.009970354 6.997748686 7.295737655 196171992 sigma_24 Stress Sigma factors Anaeromyxobacter sp. K superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 8.344304448 8.440318983 8.698773218 8.387282377 8.354679754 8.188957025 7.84805048 8.193694799 8.25943856 8.270781684 8.205070471 8.426614136 33567700 nitA Organic Remediation Aromatics Other aromatics Bordetella bronchiseptica RB50 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella bronchiseptica; 8.304457792 8.078957886 8.309891559 7.908057258 7.964082073 7.948898095 7.761992347 7.937681019 8.263500466 7.935663713 7.67990473 7.966221715 118666027 tfdA Organic Remediation Aromatics Chlorinated aromatics Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 9.538999464 9.535844458 9.833075614 9.10043323 8.840460171 8.796805355 8.616436146 8.691906746 8.730049122 8.7520402 8.777778633 9.012029093 261285854 endochitinase Carbon cycling Carbon degradation Chitin Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.155525987 8.057239276 8.467170336 7.373188552 7.499275317 7.786411895 7.784145302 7.602693982 7.715917126 7.811794041 7.388968263 7.558712105 153888401 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.293458268 8.252870328 7.523971073 7.15810986 8.061807161 7.829408968 7.168679645 8.050055499 7.110999471 7.266291679 86284437 pcaG Organic Remediation Aromatics Other aromatics Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.385789454 8.360951361 8.341667455 8.469658327 8.234023146 8.004844584 8.218174559 8.232573068 8.203550937 8.259678843 8.250458807 8.150128646 255502879 nirS Nitrogen Denitrification uncultured bacterium 9.278270812 9.27949272 8.957881991 8.98122102 8.08239915 8.731410303 9.072082113 8.764531592 8.994005015 8.827657525 8.911093104 8.66405738 78519030 ureC Nitrogen Ammonification Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.038383149 8.04283453 8.030569874 8.599332179 8.193897704 8.819454236 8.366886084 8.226082841 8.174471531 229475686 type_III_secretion virulence secretion Planctomyces limnophilus DSM 3776 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces limnophilus; 7.403771419 7.635599242 7.409112481 7.106259505 7.554387735 7.89916466 7.734706366 7.603340418 7.641025935 120605512 gyrB other category gyrB Acidovorax sp. JS42 8.568901082 8.642803407 8.725049025 9.029984762 9.060916215 8.976529206 8.592995012 9.261683022 8.383591855 9.092229477 9.000024289 9.229164388 126739238 atzB Organic Remediation Herbicides related compound Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.755200542 8.612370914 8.735050621 8.38820255 8.161154016 8.219609179 7.970122547 7.885679895 7.905675607 7.887944784 8.265569894 239982331 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces albus J1074 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces albus; 9.468602149 9.201548122 9.542570137 9.190020425 9.196219626 9.191929749 9.140707226 9.431510782 9.28701301 9.483610355 9.449770964 9.567145672 117984652 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Burkholderia phymatum STM815 8.716208396 8.699042504 8.452827649 9.062274627 9.004086501 8.630831169 8.727652619 9.295353828 8.826196187 8.762864716 8.470846491 8.843193401 150397616 glnA Stress Nitrogen limitation Sinorhizobium medicae WSM419 9.484837865 9.278202476 9.300983565 8.878636505 8.854125226 8.723005794 8.749975362 9.03660734 8.797004934 8.989585315 9.010606761 9.148687873 209500776 nmoA Organic Remediation Aromatics Nitoaromatics Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.299061558 8.330132419 7.932666716 7.287204906 7.889404826 8.109699338 7.679473086 8.096066639 7.753175012 7.88796566 7.593374861 260904205 sigma_24 Stress Sigma factors Brevibacterium linens BL2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium linens; 8.657063968 8.459169536 8.610914209 7.585946217 8.250756292 8.231842108 8.326204741 8.250386165 8.217133766 148841967 fnr Stress Oxygen stress Planctomyces maris DSM 8797 8.118612572 8.186103829 8.671088381 7.928621416 7.953413156 7.798974382 7.216915394 7.601255378 7.947104208 7.570405107 7.841267469 7.929211274 13507863 hrcA Stress Heat shock Mycoplasma pneumoniae M129 superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Mycoplasmatales;family:Mycoplasmataceae;genus:Mycoplasma;species:Mycoplasma pneumoniae; 8.652090533 8.774831546 8.931990922 8.080850755 7.626000171 7.688999981 7.630159848 7.240209244 7.359878958 7.812353513 7.75326928 8.351754016 6491812 sigma_24 Stress Sigma factors Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 9.788741797 9.666103571 9.927068065 9.180251095 9.051240144 9.082632296 9.00338561 8.874170726 8.889937723 8.983488577 8.773113758 9.292659568 172056899 pstA Stress Phosphate limitation Exiguobacterium sibiricum 255-15 8.813244561 8.990388452 8.686222054 8.965566514 8.911553918 8.920474248 8.653761174 9.270915604 8.72630564 9.147649442 9.205081873 9.131241744 194307039 lysin Bacteria phage LYSIS Morganella phage MmP1 order:Caudovirales;family:Podoviridae;genus:T7-like viruses; 8.50023503 8.374563437 8.195121268 7.521468306 8.215577106 8.43550405 7.387871335 8.392606556 7.963850795 8.14610436 7.714219707 111018896 alkK Organic Remediation Others Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.960516723 8.724290091 8.96403239 8.441067617 8.303488266 8.318515353 8.203546769 8.273446898 8.237134893 8.29206336 8.245144974 8.365744773 153153 amyA Carbon cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.273177637 8.089965988 7.746487964 7.468917236 7.352084668 7.157216638 7.726131255 7.859201236 7.639603544 7.800220681 7.609564935 218512286 fnr Stress Oxygen stress Rhizobium etli 8C-3 10.13743069 9.818409869 9.585636657 10.23198244 9.915330906 9.920275881 10.13348345 10.08326733 9.462289137 9.849730175 9.803631736 9.693965689 145702845 glycosyl_transferase_EPS Bioleaching EPS Metallosphaera sedula DSM 5348 8.553282123 8.345267527 8.401758529 7.977526756 7.769346068 7.683868383 7.557711389 7.319777621 7.391350449 7.443230949 8.004551409 121528959 chnB Organic Remediation Other Hydrocarbons Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.800604183 9.006054677 8.801450376 8.633578788 8.747868351 8.814464355 9.278058144 8.688062147 8.935181281 8.617229266 8.819674974 8.804422938 206603624 pstC Stress Phosphate limitation Leptospirillum sp. Group II '5-way CG' superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 8.688642129 8.780050372 8.710325883 8.232974157 8.212128507 8.108059516 8.008298307 7.931569975 7.762427411 7.972131238 8.181903178 212633971 sigma_70 Stress Sigma factors Shewanella piezotolerans WP3 7.89890552 7.979711531 7.906156038 7.690146171 7.727351293 7.842086797 7.796029352 7.619475715 7.711761967 228572007 endochitinase Carbon cycling Carbon degradation Chitin Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 8.99324748 9.340870781 9.323000207 9.066943001 8.889675692 8.798318015 8.83745498 8.974121255 9.005147421 8.91632316 8.831053758 9.005671334 119716368 bphA Organic Remediation Aromatics Polycyclic aromatics Nocardioides sp. JS614 8.521442117 8.390779772 8.485001621 7.940544998 7.703282673 8.010372093 7.977795479 7.813054828 8.180811494 7.998530379 8.02935279 7.869193408 120588548 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 8.48405166 8.648667785 8.820184198 8.18855037 8.390451006 8.256545828 8.23863592 8.366536314 8.352458843 8.466756817 8.566593956 8.49800142 116699377 pstA Stress Phosphate limitation Syntrophobacter fumaroxidans MPOB 8.386950321 8.106393217 8.193742868 7.958674209 8.089504999 7.737700787 8.219856181 8.123504515 8.523685685 7.812850079 7.766202641 7.334020742 133912268 dnaK Stress Heat shock Saccharopolyspora erythraea NRRL 2338 8.049354423 8.295933799 8.376859722 7.42065858 7.343523877 7.456165831 7.600533258 7.061879603 7.994161556 7.421836893 7.18732502 7.51510231 269955722 AceB Carbon cycling Carbon degradation others Xylanimonas cellulosilytica DSM 15894 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Xylanimonas;species:Xylanimonas cellulosilytica; 9.233535735 8.478128049 8.617726289 9.179207199 8.703219911 8.579384232 9.051372366 8.915368127 8.759473992 8.84701849 8.774843709 8.501140181 196201497 amyA Carbon cycling Carbon degradation Starch Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.246243604 8.164489149 7.412157519 7.05667239 7.665935767 7.124577562 7.501563004 168997439 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 8.863294723 8.558027751 8.509411471 8.641267494 8.515370991 8.435039815 8.398873577 8.717219297 8.606291052 8.408336428 8.397395226 8.556701001 iegcoxL61 CODH Carbon cycling Carbon fixation 8.797101225 8.233722361 8.501364633 8.099627084 8.023027636 8.087485306 7.997976078 7.907873691 8.161010207 7.936341217 8.043235885 8.156114123 23466089 pcc Carbon cycling Carbon fixation Bifidobacterium longum NCC2705 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 8.297518588 8.725766561 8.387716645 8.520643719 8.175947151 8.15337375 8.754783583 8.218985399 8.774186271 7.882935414 7.882158077 7.842756451 20904964 pstS Stress Phosphate limitation Methanosarcina mazei Go1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina mazei; 8.424357732 8.280395461 8.293498141 7.901952315 7.749861625 7.837162875 7.508352881 7.476658231 7.643316123 7.330476479 7.772779472 156111214 pcc Carbon cycling Carbon fixation Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 8.170121455 8.436122542 7.292039423 7.341916403 7.591509061 7.248059492 6.836059447 7.254287689 7.391749393 7.725121379 50123305 bglH Stress Glucose limitation Pectobacterium atrosepticum SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 8.990004973 9.168395446 9.173570976 9.799029023 8.240896757 8.280112881 8.466769409 163811757 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 9.6266481 9.639654552 9.44898916 9.507252063 9.446114368 9.729763748 9.378853396 9.042772332 9.411993688 9.560917798 219953464 pcc Carbon cycling Carbon fixation Anaeromyxobacter dehalogenans 2CP-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 7.496541093 8.093618794 7.185319425 7.480625381 7.49016017 7.578936258 7.744339509 7.473819239 74422789 benAB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.354482819 8.069857815 8.187476186 8.017866025 8.087444323 8.30644329 7.929404576 8.428881287 7.956940606 8.347250886 8.506591695 8.190421749 206679564 mer Metal Resistance Mercury Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 10.14281959 9.688281847 9.911221647 8.809246451 8.81526412 8.61432243 9.314832797 8.936145814 9.181926334 9.159534367 9.351153421 9.601470229 217330007 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.91898417 8.605609016 8.719545637 8.186215183 8.893921712 8.907160155 9.138810669 7.727056211 9.099834245 8.265028512 8.465407813 152984807 pilin virulence pilin Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.618328239 8.769133767 8.766682547 8.192340928 8.023146435 8.077077957 7.859293333 7.593271256 7.855476758 7.670639613 8.131419629 14524222 B_lactamase_A Antibiotic resistance Beta-lactamases Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 8.896383358 8.621659172 8.46493899 8.401183703 8.346739885 8.365771436 153891498 CadA Metal Resistance Cadmium Opitutaceae bacterium TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 9.550849047 9.558616351 9.854989402 9.237121596 9.225194091 9.164122825 9.266357913 9.080219949 9.313925031 9.32767859 9.163512763 9.501935049 210634504 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Collinsella stercoris DSM 13279 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella stercoris; 8.267102567 8.16607782 8.213138297 7.803092249 7.806867116 7.467597578 7.672015927 7.586936368 7.942593346 7.62978694 7.653952427 7.551631277 50119676 iro virulence Pectobacterium atrosepticum SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 8.079477162 7.946143743 8.233885542 7.51669617 7.422904382 7.446079858 6.733905003 7.625439023 7.054826547 6.859702104 7.190036235 99082466 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8.775254726 8.805434719 8.606065124 8.457170544 8.380725687 8.415899321 8.278896494 8.044167223 8.521083748 8.17034793 8.244846984 8.419142409 145961422 gyrB other category gyrB Vibrionales bacterium SWAT-3 9.008410814 9.102816999 9.029504703 8.53742804 8.361890395 8.767259918 8.72488745 8.389367093 8.724198104 8.579583555 8.468438144 8.842710438 110598809 dsrA Sulphur sulfite reductase Chlorobium ferrooxidans DSM 13031 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium ferrooxidans; 9.608589841 9.30134863 9.633512059 8.632486298 8.717146043 8.600051237 8.361050734 8.391522972 8.582861735 8.566366297 8.6418065 8.820950359 84499364 phn Organic Remediation Herbicides related compound Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 8.629257811 8.68369892 8.819617395 8.063317714 7.812030556 7.925963833 8.004912601 7.936516585 7.915031008 7.83753773 8.20560766 83841061 pcc Carbon cycling Carbon fixation Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 9.816078098 9.897984533 10.04325334 10.16821057 10.21126279 9.74385334 9.948878406 10.33846331 10.08815942 9.962962277 9.702755614 9.728079009 218758457 type_III_secretion virulence secretion Desulfovibrio vulgaris str. 'Miyazaki F' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 8.551536593 8.310362352 8.370618134 7.895533939 7.54572434 7.335984558 8.451745621 8.599385016 191161439 cytochrome Energy process Energy process Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.679541471 8.651188327 8.6957347 7.866963937 8.050960599 7.939937927 7.63137819 7.79925258 8.24949607 7.506702862 7.696453594 7.90122904 16124408 hrcA Stress Heat shock Caulobacter crescentus CB15 7.979430245 8.110758183 7.825815988 7.808903493 8.46150314 8.296354276 8.094958725 8.165507692 7.733408776 21219419 dehH Organic Remediation Chlorinated solvents Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.784005946 9.002218269 8.957170287 8.090431818 8.285213022 8.863540201 9.502394028 8.561375529 9.341571465 8.53086704 8.430104702 8.62749707 29125972 nosZ Nitrogen Denitrification uncultured soil bacterium superkingdom:Bacteria; 8.537747989 8.299115243 7.364441313 7.567794024 7.938872077 7.741642683 7.139781997 8.115089997 7.560895743 7.614219487 7.673158419 115368281 linB Organic Remediation Pesticides related compound Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 9.046898896 8.690994199 8.960908989 8.59714457 8.364463858 8.224520402 7.904506111 8.029007308 8.500297327 8.092553257 8.07568977 8.276889543 84366045 pcaG Organic Remediation Aromatics Other aromatics Xanthomonas oryzae pv. oryzae MAFF 311018 8.283872967 8.662259925 8.50035839 8.533267704 8.858101179 8.850879781 8.866559135 9.147225539 8.954342127 9.080343899 8.929443447 9.108937611 19171194 phenol_oxidase Carbon cycling Carbon degradation Lignin Gaeumannomyces graminis var. tritici superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Gaeumannomyces;species:Gaeumannomyces graminis; 8.424539622 8.190016398 8.640254656 8.255313352 7.701837781 7.819812681 7.585170924 7.975975865 7.984121145 7.91408055 7.696903501 8.180925578 163760282 gyrB other category gyrB Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 9.699095111 9.603530171 9.645133831 8.553684159 8.826388444 8.814395103 9.62185585 8.971718208 9.081809708 9.15227932 8.938015382 126727311 mhpA Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2150 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.391526679 8.469356635 8.565883637 8.185735889 8.09690035 7.839470326 8.018666732 8.545209335 8.189497201 8.030653019 7.709549192 8.393371499 167948241 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Endoriftia persephone 'Hot96_1+Hot96_2' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Endoriftia;species:Endoriftia persephone; 9.258704981 9.227731331 9.324373858 8.628864974 8.725044407 8.663997417 8.90083663 8.46972303 8.899680076 8.474958293 8.424031398 8.752822503 212706130 TerC Metal Resistance Tellurium Providencia rustigianii DSM 4541 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 6.993286765 7.514755152 7.473735926 7.541662546 7.895762355 7.72044654 7.551068108 7.472839375 224495601 APS_AprA Sulphur adenylylsulfate reductase uncultured delta proteobacterium 8.290847759 8.172736391 8.171822025 8.038444087 8.016700647 7.990311157 8.113983475 7.716694077 8.02517843 8.162462903 7.791410288 7.552508762 156934815 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Enterobacter sakazakii ATCC BAA-894 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 8.397142197 8.610243111 8.644294752 7.966494127 7.891864405 7.887022298 7.466718373 7.75337966 7.60629627 7.632863139 8.013727544 77461684 ppx Phosphorus Phosphorus utilization Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.650357341 8.689289125 8.739855717 7.713884866 7.853702858 8.03412924 8.156739874 7.736061804 8.298513355 7.80222644 7.616133543 7.983008011 21107359 katE Stress Oxygen stress Xanthomonas axonopodis pv. citri str. 306 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas axonopodis; 8.417638218 8.914296054 8.425573372 8.950026878 8.814513719 8.73776603 9.202290885 9.121479323 8.965450388 9.231632606 9.286207589 8.898676715 87134774 pimF Organic Remediation Aromatics Aromatic carboxylic acid Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 7.877232311 8.161093237 8.500181582 7.947957595 8.035328589 7.538446815 7.800475895 7.789863487 7.822600234 8.003110375 7.62898505 17742859 norB Nitrogen Denitrification Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.912831655 8.87802591 8.40372871 9.435352567 9.208553067 8.633803848 9.228930801 9.402210007 9.211040295 9.149071711 9.0900834 8.80431038 157913777 Catechol Organic Remediation Aromatics Other aromatics Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 9.355890555 8.954764122 9.015308998 9.389169982 8.939720372 8.891273382 9.442785667 9.301876746 9.232566353 9.265716874 9.153515499 8.819656908 219677025 linB Organic Remediation Pesticides related compound gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 9.459784683 9.300765499 9.445286589 8.753599086 7.853994066 8.772616322 8.651510279 8.444951519 8.502504464 8.308590452 8.735766392 8515797 nahA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 8.385978543 8.289828839 8.482109431 8.287384059 7.825356141 7.693349761 7.904381133 8.194934502 7.902941478 8.082533612 75704252 nmoA Organic Remediation Aromatics Nitoaromatics Anabaena variabilis ATCC 29413 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena variabilis; 7.239633755 7.884494818 7.725604863 7.159156973 7.280427563 7.601880621 7.665775666 7.61039137 7.798853863 218521602 CadA Metal Resistance Cadmium Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 9.270494824 9.211190826 9.318042356 8.961036668 8.85858874 8.76876366 8.994719044 8.434998147 9.094758613 8.786215979 8.608336038 8.833589098 89512768 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 9.491722032 9.378887814 9.19551828 9.181346846 9.057806713 8.91145202 9.370209326 9.240008099 9.396804148 8.996675895 9.015062518 8.88580416 149123832 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 8.89763086 8.938621284 9.184694666 8.578335722 8.566040292 8.48158012 8.132931389 8.343922667 8.333280225 8.204439109 8.376198494 8.624453797 167644017 iro virulence Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 7.893824912 7.838941297 8.002162207 7.314681536 7.987182431 7.846500188 7.74052939 7.846786237 189467259 B_lactamase_A Antibiotic resistance Beta-lactamases Bacteroides intestinalis DSM 17393 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides intestinalis; 8.288736649 8.344095287 8.769147823 8.523615025 8.033983141 7.811912911 7.964503985 8.419383514 8.412024223 8.297245947 7.510645096 8.428173693 13476196 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 7.772023849 7.788301453 7.850524012 7.453845199 7.675107855 7.782019658 7.504708792 7.975965722 7.639424254 56677039 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 9.448940833 8.801013672 9.790597417 9.569830707 9.272693321 9.60218826 9.373543389 9.073716616 9.227615839 9.319234101 114570304 pcc Carbon cycling Carbon fixation Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 8.490365074 8.721639092 8.67824856 8.394753272 8.532645495 8.552839271 8.807734982 8.777451333 8.459290777 8.549347154 8.484005487 270330411 iro virulence Acidovorax avenae subsp. avenae ATCC 19860 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax avenae; 9.164210069 9.069444499 8.753528437 8.761036257 8.622585634 8.673628419 8.891186154 8.638607179 8.717251349 8.664709253 8.773992017 8.592238879 119716315 fnr Stress Oxygen stress Nocardioides sp. JS614 8.514135224 8.489876162 8.237907501 8.311794869 8.198364406 7.764298981 8.059134863 8.314278194 8.358688495 7.99110181 8.071533914 157679479 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.96079037 9.138286282 9.110052438 8.409783105 8.462595117 8.484462119 8.488803343 8.455759553 8.437305001 8.376326462 8.252812443 8.692177324 115376518 phoB Stress Phosphate limitation Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 8.325010245 8.366394881 8.329659296 8.099698719 7.960757707 7.979679974 7.924888418 7.598481114 8.087384065 7.820531549 7.851910919 7.940333451 144898098 ahpF Stress Oxygen stress Magnetospirillum gryphiswaldense MSR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 8.493183462 8.460178601 8.371258066 8.430686797 8.149835186 8.515791592 8.520108303 8.660045518 8.420865699 8.333467124 184192133 sigma_24 Stress Sigma factors Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 9.635721516 9.410509823 8.60772645 8.755966015 8.681935344 197789916 nitA Organic Remediation Aromatics Other aromatics Oligotropha carboxidovorans OM5 8.449484394 8.363294695 8.686786202 8.416742316 8.311122473 8.13884379 8.385997606 8.438440032 8.508755123 8.331651036 8.091952357 146293063 CadA Metal Resistance Cadmium Shewanella putrefaciens CN-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella putrefaciens; 9.140812088 8.928995195 9.237967945 8.280585331 8.412157941 8.236839997 8.344756082 8.232202269 8.252114512 8.455975648 89087208 nplT Carbon cycling Carbon degradation Starch Bacillus sp. NRRL B-14911 8.566912232 8.662049529 8.780382586 7.935200952 8.095061483 8.059236821 8.403618497 8.338225595 8.490114272 8.289330267 8.044814604 8.122741207 15073307 grpE Stress Heat shock Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 9.568864095 9.546548461 9.513903228 9.702976788 9.904194146 9.686670238 9.281713322 10.17009381 9.47382653 9.881641696 9.8522319 10.10105837 76057469 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.023576055 9.07155812 8.883394223 8.346095494 8.591418836 8.742736321 9.028144217 8.575569055 8.734451347 8.83653732 8.947171333 170690454 ahpF Stress Oxygen stress Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 8.297538279 8.151428832 8.003124493 8.034439705 8.127042561 7.430181028 7.819721495 8.070662671 7.876367279 8.159473158 7.804746557 89143218 gyrB other category gyrB Microbacterium thalassium superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium; 8.321703664 8.548722178 8.513013188 8.79826933 8.837076188 8.75820143 8.299023945 8.912501116 8.647138308 8.663748598 8.632359542 8.803346103 239933535 ara Carbon cycling Carbon degradation Hemicellulose Streptomyces ghanaensis ATCC 14672 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 8.639461545 8.402730067 8.479435843 8.178306666 8.410923279 8.38926822 8.551581031 8.620193012 8.465124382 8.68359163 8.334426615 8.424960762 170724196 ppx Phosphorus Phosphorus utilization Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.098030341 7.981730009 7.935531032 7.905271206 7.566970589 7.503128493 7.430560495 7.487475745 7.367596123 8.278433286 119526155 mer Metal Resistance Mercury Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.44528507 8.270448586 8.069746792 8.394539965 8.293365458 8.280128915 8.652957895 8.256959179 8.569645749 8.572445886 8.358122159 56679031 proV Stress Osmotic stress Ruegeria pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 8.326100445 8.649100143 8.688337633 8.226687232 8.358495863 8.180249617 8.189461615 8.390190061 8.125844778 8.363007003 7.945394514 8.16937272 229322481 iro virulence Rhodococcus erythropolis SK121 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 8.266524488 8.157604657 8.489510937 7.73420814 7.741476206 7.698808865 7.97936262 8.011954611 8.231304038 8.108226069 8.063227571 126105521 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.485016086 7.699005614 7.706995368 7.918154607 7.563792953 7.964098516 7.854252162 7.577372069 7.787943786 86566820 alkB Organic Remediation Other Hydrocarbons Frankia sp. CcI3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.608979227 8.769028748 8.905702551 9.014696246 8.892228461 8.802263576 9.219672668 9.198178897 8.676791076 9.130649614 8.902694029 8.428138651 119715861 trzN Organic Remediation Herbicides related compound Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.751009783 8.728105757 8.769263249 8.247365639 8.716263595 8.824320289 9.071390215 7.903203477 8.86407441 8.301760656 8.468772206 8.396474726 110589340 fnr Stress Oxygen stress Endoriftia persephone 'Hot96_1+Hot96_2' 8.908052098 8.793364039 8.795291446 8.394683897 8.200343501 8.263911605 8.022299613 8.214240809 8.07635509 8.283379598 7.935972228 8.41977337 94471083 narG Nitrogen Denitrification uncultured bacterium 9.186575959 9.397399181 9.226848433 8.66049937 8.605458279 8.64562678 8.898844674 8.547044983 8.9046888 8.75462625 8.718583454 8.683499749 4220431 phdCI Organic Remediation Aromatics Polycyclic aromatics Ralstonia sp. U2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 8.151106638 8.270310248 8.278665682 7.511655685 7.503196912 7.490470071 7.826303419 7.161187222 8.168780822 7.535247355 7.44156214 7.507807856 55981191 pilin virulence pilin Thermus thermophilus HB8 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 8.748463037 8.854285765 8.609350613 8.398458606 8.178890433 8.305365127 8.132114126 8.376121542 8.279243562 8.269544161 8.394254661 8.522234088 46578420 gyrB other category gyrB Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 8.895891493 8.715196867 8.638531733 8.623305189 8.661140169 8.481330343 8.737731032 8.558639126 8.71832955 8.551688262 8.716554597 8.385938555 218253720 ChrA Metal Resistance Chromium Mitsuokella multacida DSM 20544 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Mitsuokella;species:Mitsuokella multacida; 9.318974576 9.388658225 9.350336108 8.598894626 8.729692552 8.718903132 8.745362478 8.007714772 8.816545557 8.6240064 8.617017219 8.83362145 145568606 gyrB other category gyrB Pseudomonas stutzeri A1501 8.409014319 8.382855194 8.330116965 8.01674379 8.137256582 8.011666314 8.030222887 8.160207383 8.255490728 8.050528907 8.01117452 8.168667636 84514612 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 8.733897162 8.783607708 8.487983194 8.924587369 8.72704257 7.944080504 8.613107275 8.667880335 8.792975629 8.789953154 8.177977125 34103352 CopA Metal Resistance Copper Chromobacterium violaceum ATCC 12472 8.151835093 8.338625627 8.382859767 7.653539503 7.773901943 7.973743924 7.849274721 7.991863523 7.706848855 7.769601541 7.916528146 84687811 glnA Stress Nitrogen limitation Rhodobacterales bacterium HTCC2654 8.560233854 8.811035693 8.540708696 8.191890696 8.342087954 8.635083423 8.78411198 8.229369883 8.641684873 8.341333483 8.355218018 8.444625414 255331767 glnR Stress Nitrogen limitation Geobacillus sp. Y4.1MC1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.588869045 8.252527016 8.509012328 7.874850916 7.708629817 7.670917025 7.761755948 7.662571972 8.10620662 7.797253922 7.784778372 7.867648354 161366395 ppx Phosphorus Phosphorus utilization Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 8.323995467 8.103444177 8.148515735 8.127409329 8.104609739 8.189253936 8.333277839 8.130512648 8.139801832 7.931927112 8.126129551 7.725649243 157374615 pimF Organic Remediation Aromatics Aromatic carboxylic acid Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 9.023642668 9.114440874 9.018921812 7.978340501 8.010642896 7.857054585 7.500034677 7.527522904 8.163478336 170017889 ppk Phosphorus Phosphorus utilization Leuconostoc citreum KM20 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc citreum; 6.791689868 7.16581264 6.82977827 7.39403715 159891207 sigma_24 Stress Sigma factors Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 8.50336468 8.400515432 8.653687481 8.243388381 8.175515822 7.830371252 7.650244742 8.372863663 8.284532629 8.198270985 8.035771712 113530712 nirS Nitrogen Denitrification Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.177822395 8.34082835 8.408605101 7.474060999 7.371861943 7.849165624 7.607617916 7.12946762 7.939125603 7.416134615 7.60100126 7.568222493 218458458 pulA Carbon cycling Carbon degradation Starch Rhizobium etli Kim 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.927794356 8.948094099 8.915277653 8.685587767 7.910399169 8.585164628 8.69870058 8.361128262 8.568846516 8.352124968 8.311664393 8.333098823 57237603 grpE Stress Heat shock Campylobacter jejuni RM1221 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter jejuni; 8.302267566 8.314119285 8.737511389 8.569692079 8.562091492 8.031764811 8.596320918 8.224997315 8.424296034 8.65239434 8.77865774 209518807 nmoA Organic Remediation Aromatics Nitoaromatics Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.9426139 9.083119289 8.699124027 8.768339812 8.891775559 9.005014459 9.060667568 9.403123943 9.020563621 9.096966051 9.107328319 9.121764809 29342124 gyrB other category gyrB Enterococcus faecalis V583 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus faecalis; 7.719971391 7.454843877 7.519763257 7.107280833 7.101413045 7.690583418 7.380322282 7.555071477 7.323836871 121604928 pmdAB Organic Remediation Aromatics Others Polaromonas naphthalenivorans CJ2 8.176646608 8.169125594 8.186672903 7.491368434 7.42984687 7.643737283 7.577437315 7.311799996 7.815304459 8.119683158 7.750719886 7.791105636 83594442 pchCF Organic Remediation Aromatics BTEX and related aromatics Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 8.435214705 8.37966226 8.435567733 8.491351198 8.473615832 8.090889784 8.093856307 8.573702733 8.467721816 8.541807401 8.424138866 8.538820435 170744895 pheA Organic Remediation Aromatics Other aromatics Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 8.82185144 8.55227087 9.104432676 8.749655528 8.838848342 8.366573822 8.707005121 8.911642226 8.487550081 8.872174371 8.811566264 8.940683575 160360816 atzA Organic Remediation Herbicides related compound Petrotoga mobilis SJ95 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Petrotoga;species:Petrotoga mobilis; 8.368890499 8.341497109 8.758977993 7.741064361 7.612380156 7.799569878 7.316531419 7.070356733 8.070180545 7.566220054 7.44807814 7.694023556 209524662 ureC Nitrogen Ammonification Arthrospira maxima CS-328 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira maxima; 9.04690355 8.940671703 8.868428379 8.495382472 8.441517677 8.42263966 7.948876186 8.17213919 8.249177272 8.276552491 8.101487349 8.651447746 8515781 nahA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 8.082566913 8.370495312 7.839226294 8.08662109 8.201134117 8.101513224 8.36322382 8.330314675 17935100 ZntA Metal Resistance Zinc Agrobacterium tumefaciens str. C58 8.48552784 8.391821946 8.63198541 7.858625809 8.00418507 8.251635101 7.96277294 7.76273923 8.228581072 7.936209163 7.88832882 8.119027395 6599004 primase Bacteria phage REPLICATION Bacteriophage phiYeO3-12 8.664650578 8.52599467 8.641508471 8.052259631 7.682668908 8.020912073 7.867928567 7.422218971 8.095312863 7.683830873 7.56591718 7.919161259 83859331 pstB Stress Phosphate limitation Oceanicaulis alexandrii HTCC2633 8.406561177 8.202884992 8.488917088 8.652965567 8.548049911 8.309630871 8.679986467 8.457646919 8.292965651 8.127007126 8.471168099 7.809388888 219677860 ppx Phosphorus Phosphorus utilization gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.989571836 9.141928515 8.768795096 8.72648758 8.654446217 8.6187823 8.701240061 8.462996503 8.700133525 8.450004028 8.545938789 8.539935217 56313706 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 9.154927321 9.320279449 9.165627283 8.83715218 8.90748931 8.638854527 8.600858302 8.86342314 8.853365803 9.095811063 9.112464457 8.966669246 120404319 SMR_antibiotics Antibiotic resistance transporter Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.584088087 8.600007109 7.786300602 8.114390215 8.832073627 8.255492494 8.446624142 8.412361332 8.615824563 169126477 mnp Carbon cycling Carbon degradation Lignin Antrodia cinnamomea 8.472691748 8.471765936 8.44178128 8.010897314 7.893972258 8.142124408 7.993231305 7.896763344 8.006696299 8.085255427 8.04914505 8.186837764 18034320 dsrB Sulphur sulfite reductase Syntrophobacter fumaroxidans superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 9.090581646 9.215572671 9.427559884 9.164070977 9.304159248 8.996116494 9.134141682 9.505446685 8.720960931 9.475017503 9.436853933 9.320356804 113200815 catechol_B Organic Remediation Aromatics Other aromatics Sphingomonas sp. C230 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.215483365 7.863021188 8.194936742 7.990915939 7.835684719 7.852947512 8.153647589 8.252554577 7.823630631 7.50434783 7.696772512 145554833 CopA Metal Resistance Copper Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 9.145978698 8.999977717 9.197126425 8.620957256 8.550435109 8.3813303 8.863854229 8.976611307 9.023491125 8.655978271 8.925467881 238787894 MFS_antibiotic Antibiotic resistance transporter Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 9.041973087 9.167355597 9.230901425 8.82675288 8.958707564 9.342626792 9.369200881 8.964096529 9.208399899 9.372025761 9.264376427 9.519600005 166860528 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.437346406 8.320115231 8.398865625 8.476449632 8.431316092 8.187163612 8.406281441 8.761902862 8.381260355 8.585741283 8.496426378 8.208189026 117928667 endochitinase Carbon cycling Carbon degradation Chitin Acidothermus cellulolyticus 11B 9.102296389 8.389736511 8.302372892 8.989819044 8.359641172 7.908689127 8.895734418 8.262327222 111150285 linC Organic Remediation Pesticides related compound Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 9.137658496 8.76275347 8.396001525 8.007850157 8.310102074 8.562500025 8.982059627 8.266726404 8.5662716 8.157377541 8.44815408 8.078803883 86571836 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.677070376 9.720857196 9.751473006 9.18903821 8.980051494 8.98336514 8.896835151 8.948474355 8.877550627 9.015695194 8.981417203 9.244752487 224802933 pstA Stress Phosphate limitation Opitutaceae bacterium TAV2 8.907327218 8.613899274 8.60996089 8.260615692 8.189814979 8.482816406 8.494553531 8.546440303 7.855385708 148830707 MATE_antibiotic Antibiotic resistance transporter Erythrobacter sp. SD-21 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 8.427817186 8.77322709 8.353416496 7.768784619 8.173654117 8.516406356 7.907529374 8.179374568 8.033804694 8.344974706 27383039 alkK Organic Remediation Others Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.404486532 8.315285812 8.338358362 7.463641329 8.170928682 8.216785941 8.111984338 7.399321641 8.352102499 7.471419748 7.67843857 7.488462662 196477453 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 9.628117977 9.606185159 9.626498642 9.439216539 9.353831792 9.241539102 9.154958697 9.343816074 9.212701277 9.409752765 9.300280004 9.522138711 118729863 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.736487541 8.701237057 8.677187638 8.940152584 8.821352176 8.295465288 8.913757179 8.801811719 8.529656605 8.929826776 8.908995804 8.35425405 161167869 ALN Organic Remediation Others Sorangium cellulosum 'So ce 56' 8.382136054 8.478247515 8.301120484 8.399834511 8.361157756 8.041195033 8.555281853 8.066015446 8.430138831 8.363339508 8.472981441 182413555 nirA Nitrogen Assimilatory N reduction Opitutus terrae PB90-1 9.123419072 9.27112128 9.140319835 8.565774783 8.378860318 8.794290292 9.021883142 8.86067146 9.06831744 8.868730268 9.023707782 8.772843181 119369952 gyrB other category gyrB uncultured bacterium superkingdom:Bacteria; 8.756755136 8.817101171 9.028802659 8.68090618 8.72555836 8.574913352 8.78223483 8.688891507 9.096278532 9.107647308 8.975607624 8.963113952 110823168 chnB Organic Remediation Other Hydrocarbons Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.77854919 8.607728173 8.603525816 8.090868769 8.175229037 8.145113734 8.017116385 7.405956861 8.109598245 7.812657255 7.962396882 8.235314203 84502845 pcaG Organic Remediation Aromatics Other aromatics Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 9.130765781 9.141819981 9.361819976 8.590282814 8.72727379 8.709761827 8.567819145 8.691231744 8.634585543 8.74015094 8.87325298 160355321 fnr Stress Oxygen stress Bacillus selenitireducens MLS10 8.03059911 8.136891023 7.15054588 7.348485609 7.438321161 7.35629415 7.795469563 212559334 gyrB other category gyrB Anoxybacillus flavithermus WK1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Anoxybacillus;species:Anoxybacillus flavithermus; 9.020831461 8.12561758 8.401193587 8.416227528 7.983043873 7.796052857 8.354626357 8.307845367 8.541015623 8.123466678 7.983719858 7.66426373 257066142 cap virulence capsule Anaerococcus prevotii DSM 20548 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Anaerococcus;species:Anaerococcus prevotii; 8.30369565 8.086862795 119949379 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 8.719889873 8.821940146 8.651183437 8.329200686 8.365270523 8.795557086 8.938963457 8.722368813 8.685843 8.663773304 8.557343125 8.686821255 66474907 cmuA Organic Remediation Chlorinated solvents uncultured bacterium superkingdom:Bacteria; 8.457562377 8.267859656 8.463320982 8.033544156 8.073937434 8.231913715 8.567386371 7.342280778 8.579801007 7.766923332 7.66345895 7.757510244 24981461 katE Stress Oxygen stress Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.855517286 8.763202632 8.888597162 8.669362958 8.684843378 8.454982364 8.609161209 9.004110082 8.719199804 8.778926215 8.776883098 8.579531028 98977049 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sphingopyxis alaskensis RB2256 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 8.733134007 9.03386835 9.16147358 9.20905712 9.299593049 9.122071379 9.431350559 9.743361581 9.376109236 9.824012934 9.595356884 9.762446564 211958217 linC Organic Remediation Pesticides related compound Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 8.2639647 8.339216219 7.571079332 7.647653012 7.985027023 7.900341169 7.594579309 7.943915714 7.945213165 7.820473841 146405786 atzC Organic Remediation Herbicides related compound Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 9.742339143 9.626883259 10.02274199 9.678788216 9.530601601 9.333357127 9.491402646 9.53377867 9.423897088 9.419070438 9.722599561 9.276653791 111149594 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 9.236251388 9.37623212 9.061694061 8.505218852 8.901049726 9.501410799 9.652943011 9.269431424 9.500059646 8.997995834 9.118189446 9.123422353 183176990 hrcA Stress Heat shock Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 8.356515422 8.295208584 8.492457947 8.139087221 8.20880281 8.600283908 8.385912926 8.500263977 8.630784366 8.168151116 8.411498494 8.130277546 229738363 B_lactamase_C Antibiotic resistance Beta-lactamases Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 10.00833537 9.627738209 9.993892928 9.173494449 9.000335151 8.978137959 9.313325116 9.035995707 9.44188799 9.199044655 9.220759606 9.315992074 99030581 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 8.803745195 8.68757545 8.957770489 8.173874351 8.078630813 8.15072309 8.506416838 8.025762916 8.538852888 8.060390268 8.10369714 8.106920547 27657375 nhh Organic Remediation Aromatics Nitoaromatics uncultured bacterium BD1 superkingdom:Bacteria; 9.249014012 8.561588872 9.156886143 8.56805418 8.185728841 9.014404026 8.972111432 9.092165171 8.627593366 8.473958008 8.269532742 124516097 APS_AprA Sulphur adenylylsulfate reductase Leptospirillum rubarum superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 9.063193966 8.871831946 9.21904043 8.423002619 7.485735344 8.553994644 8.380961959 8.085848999 7.956860456 8.132139143 8.453239926 182437507 TerD Metal Resistance Tellurium Streptomyces griseus subsp. griseus NBRC 13350 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 9.955420358 9.890770622 9.493195838 9.348826113 9.240053921 9.216871681 9.402640963 9.194392695 9.546897733 9.462940958 9.5383895 9.256167619 86159495 cytochrome Energy process Energy process Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 8.193059601 8.751388773 8.737383246 8.013239064 8.406353263 8.817823299 8.872908086 8.525238237 8.854488089 8.614208401 8.565650985 8.832559907 254389458 AceB Carbon cycling Carbon degradation others Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 8.878747393 8.994978813 8.97035497 8.479689443 8.397485688 8.275279334 8.373739435 8.548024921 8.501205791 8.477740874 8.179607324 8.641022744 21306018 B_lactamase_A Antibiotic resistance Beta-lactamases Desulfovibrio desulfuricans superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 8.445700716 8.495926677 8.372569515 8.066764724 7.977880823 7.824278887 7.533993438 7.886974709 8.284722676 7.859403845 7.928374764 7.783972497 115422620 nagG Organic Remediation Aromatics Aromatic carboxylic acid Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 8.679447497 8.708963856 8.609109825 8.623739791 8.431082852 8.690117309 8.103026081 8.275705135 8.473440321 8.152351965 8.578223993 8.463711673 157963799 silP Metal Resistance Silver Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 9.060546941 8.59955429 8.430200658 8.801238847 8.472557914 8.189794833 8.762350085 8.563620887 8.716647494 8.673195523 8.552887819 8.248632815 160880408 mannanase Carbon cycling Carbon degradation Hemicellulose Clostridium phytofermentans ISDg superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium phytofermentans; 8.531758746 8.355859212 8.544753517 7.734125355 7.832176995 7.593774763 7.599018926 7.754916294 7.936627205 7.759991473 7.626858799 8.061690486 91780948 tfdA Organic Remediation Aromatics Chlorinated aromatics Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.845532037 8.760832979 8.64728337 8.950104505 8.830355338 8.660570576 8.657044021 9.233215753 8.928143466 8.849510102 8.638650339 8.779533258 218891360 mer Metal Resistance Mercury Pseudomonas aeruginosa LESB58 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.027370009 8.367858659 8.079520292 7.939948766 7.562260196 7.760353666 7.679349997 7.708710848 7.404950394 7.705833288 120405632 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.96634328 8.844728947 8.652117313 8.68107314 8.59106922 8.473316795 8.663518265 8.900645565 8.86243028 9.096341311 9.118196766 8.920610069 114800512 TerC Metal Resistance Tellurium Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 9.216700654 9.567153036 9.446290483 8.694797683 9.803681735 9.909270286 9.954754726 9.817799401 10.05532086 9.959578679 9.890188165 258603297 ahpC Stress Oxygen stress Corynebacterium jeikeium ATCC 43734 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 9.026056872 8.7602821 8.938534924 8.973639767 8.738247964 8.646664255 8.885846163 8.563973586 8.980890075 8.909462112 9.092065323 8.340600668 85373909 pstB Stress Phosphate limitation Erythrobacter litoralis HTCC2594 8.26427997 8.14386119 7.703075387 7.570762324 7.875347769 7.595455834 8.159797631 7.425506846 7.202429209 227490075 SMR_antibiotics Antibiotic resistance transporter Corynebacterium pseudogenitalium ATCC 33035 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium pseudogenitalium; 8.285208093 8.149713041 8.25083587 8.446427966 8.36680395 8.290744753 7.804540793 8.320667954 8.455245292 8.301728137 8.37529874 8.577651016 262219780 pstC Stress Phosphate limitation Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;species:Grimontia hollisae; 8.523421364 8.623185689 8.816680669 8.215470897 7.979309616 7.725346204 8.377601261 8.468952841 8.058750657 198265233 ChrA Metal Resistance Chromium Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 8.673920891 8.57268579 8.641450213 8.191156164 8.306224277 7.921385098 8.07715355 7.814551381 8.306217473 8.114815655 8.128858911 8.278299851 157316067 pilin virulence pilin Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 9.141801878 8.793707436 9.417588748 8.490083953 8.496596814 8.479575447 8.147648021 8.124994885 8.481904191 8.334453026 8.296841674 8.424377529 119898829 pmdAB Organic Remediation Aromatics Others Azoarcus sp. BH72 7.795810871 7.567103148 7.489073338 7.29579594 7.548189982 7.677229933 7.525228952 7.241434802 7.494428693 116670602 nagG Organic Remediation Aromatics Aromatic carboxylic acid Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8.214276271 8.571720167 8.536202404 8.323832787 8.582447431 8.726239708 8.75137825 8.666349007 8.718061338 8.623915397 8.544990196 8.684241919 157406160 CadA Metal Resistance Cadmium Methylobacterium populi BJ001 9.11984641 9.063692964 9.193196191 8.619308552 8.366968261 8.561970701 7.899451325 8.338189881 8.683177133 8.405010646 8.32288598 8.520807605 227463451 endochitinase Carbon cycling Carbon degradation Chitin Isaria fumosorosea superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Cordycipitaceae;genus:Isaria; 8.574165542 8.426838312 8.403712484 8.563898186 8.361745586 8.193044637 9.037485258 8.034660004 8.848785177 8.504204892 8.668440919 212672447 tutFDG Organic Remediation Aromatics BTEX and related aromatics Desulfovibrio piger ATCC 29098 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio piger; 8.622963023 8.186787289 8.591474797 9.039750055 8.478966284 8.429618559 8.794036956 8.971957847 8.833489111 8.755603794 8.445471425 166860747 atzB Organic Remediation Herbicides related compound Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.382172194 8.574075085 8.676202627 8.466872339 8.021260327 8.472964167 8.847006025 8.504431444 8.782143625 8.402244941 8.6303053 227295588 nplT Carbon cycling Carbon degradation Starch Paenibacillus sp. 8.064690614 8.199595147 7.881037831 8.056112191 8.440760829 8.724304714 8.611397028 8.438611743 8.787984256 8.81819222 8.781140338 118471712 bphC Organic Remediation Aromatics Polycyclic aromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 9.076731162 9.057727161 8.376850225 8.252211189 8.54976011 8.907105607 8.373036072 8.929655308 8.514759154 8.702141839 8.314380025 170694927 mer Metal Resistance Mercury Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 8.030650474 7.995792645 8.294745755 7.292754737 7.317061963 7.362520971 7.139193857 7.179614443 7.207668241 45649067 bco Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. CIB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 9.135771767 8.232294956 9.3731034 9.223794602 9.014897561 9.079239542 9.098277925 8.616178487 8.950091067 8.639930533 49610423 oxyR Stress Oxygen stress Pectobacterium atrosepticum SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 8.91840287 8.862719564 9.304991444 8.895106134 8.722962209 8.701165123 8.776435837 9.070454469 8.945931756 9.013807373 8.932723967 9.178089272 223892901 pstB Stress Phosphate limitation bacterium Ellin514 8.91519434 8.633668273 8.861737757 8.424652861 8.499926744 8.523754405 8.168424622 8.66724101 8.349981289 8.611749795 8.636340865 8.50206376 108805190 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 7.949650811 7.824306657 7.429287528 7.507426676 8.028152355 7.856370297 7.775460074 8.129923746 7.983749719 7.658077504 7.854535346 83361900 ChrA Metal Resistance Chromium Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 9.114240621 9.099044316 8.739512303 8.917121835 8.682124502 8.782490433 9.455978615 9.195663633 9.17352249 9.05016886 9.270712666 9.028114606 121594240 CadA Metal Resistance Cadmium Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 9.813316941 9.695721887 9.692933414 9.307631418 8.939983563 8.837127046 8.692220421 9.080566658 9.294489242 9.034182855 9.428200227 154505542 cda Carbon cycling Carbon degradation Starch Ruminococcus gnavus ATCC 29149 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus gnavus; 8.724536958 8.591491823 8.776694089 7.932705031 7.759876795 7.944202501 7.446047311 7.481415598 7.804460313 7.817892374 7.560610426 8.026586569 78066383 mdlD Organic Remediation Aromatics Other aromatics Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 9.002003582 8.670130303 8.807330916 8.458881137 8.476948386 8.57504176 9.110849181 8.879575072 9.121216406 8.577227848 8.44989553 8.676308985 153864447 narI Stress Oxygen limitation Beggiatoa sp. SS superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Beggiatoa; 9.187311455 9.029761069 8.941869157 8.681446079 8.357617796 8.428077516 8.40120069 8.478223257 8.267967837 8.2885342 8.664766008 148551013 tftH Organic Remediation Aromatics Chlorinated aromatics Sphingomonas wittichii RW1 9.014662012 8.540069096 8.605816019 9.18185417 9.106330103 8.677650085 8.592112266 9.26867899 8.837759758 9.105046477 8.936047922 95112518 iro virulence Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 8.934615435 9.015581785 8.653305955 8.71624721 8.527355186 8.238184857 8.626512252 8.514387753 8.501231212 8.729588129 8.65747827 8.060650268 283797999 obgE Stress Radiation stress Clostridium sp. M62/1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 10.49346307 10.23168071 9.782967411 9.531459724 9.444816433 8.868906162 9.114115391 9.692618706 9.894381306 9.415914267 2588989 phdI Organic Remediation Aromatics Polycyclic aromatics Nocardioides sp. superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.124090404 8.17077976 8.210966908 8.498304143 8.427983936 8.259973859 8.25024846 8.357568411 8.189625804 8.521028884 8.20866696 7.715572932 46197350 obgE Stress Radiation stress Thermus thermophilus HB27 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 9.628965095 9.617144583 9.654407458 8.929927588 8.714996412 8.874109859 8.793391771 8.664132938 8.680279014 8.73454723 8.713657168 9.124226339 33391471 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 10.62261308 10.7987192 10.4343659 8.996473029 9.069431277 9.116322072 9.276279223 9.082365791 9.138322388 9.433678863 9.932088471 9.922893629 118424472 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9.28392769 9.48479609 9.573441479 8.535517476 7.91941843 8.837383031 8.93399111 8.716296761 8.688584831 8.942969649 8.970036422 120435526 CueO Metal Resistance Copper Gramella forsetii KT0803 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Gramella;species:Gramella forsetii; 8.083347026 8.430699817 8.703426756 7.852968081 7.927627721 7.869710586 7.697269508 7.792064462 7.95607148 7.974624863 7.868633352 7.988902055 117578125 ppk Phosphorus Phosphorus utilization Gramella forsetii KT0803 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Gramella;species:Gramella forsetii; 9.344073392 9.127965545 9.384375202 8.653286108 8.619279811 8.590517375 8.357215478 8.316564512 8.384893931 8.630961245 8.428875487 8.891764908 33414841 scaffold Bacteria phage STRUCTURAL Aeromonas phage Aeh1 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 8.496791995 8.813922371 8.810916501 8.070977969 7.933527824 7.949044198 7.667444718 7.886644375 8.220906434 7.757895918 8.007246926 8.003269685 255036949 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Dyadobacter fermentans DSM 18053 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 8.42468689 8.891076606 8.236018761 7.896492935 8.467761061 8.363200588 8.540333739 8.755906104 8.588360682 8.79014848 8.925060505 8.949693167 21219743 ureC Nitrogen Ammonification Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 9.012494417 8.881481788 9.285317753 9.344580975 9.302614888 9.291662976 9.186693595 9.667828757 8.92336715 9.509608413 9.427352181 9.505710805 227490922 obgE Stress Radiation stress Corynebacterium pseudogenitalium ATCC 33035 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium pseudogenitalium; 8.371003698 8.412238088 7.742903253 8.088754031 7.571315545 7.993845203 7.689354984 7.872619887 7.883790286 7.727387007 184197271 narI Stress Oxygen limitation Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.685217396 8.592792575 8.635450835 8.976900342 8.990571617 8.726774098 8.980492579 8.951697998 8.702215951 8.990176461 8.752845611 8.619300751 170696695 MFS_antibiotic Antibiotic resistance transporter Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 11.05525395 10.93070512 10.95126311 10.39894778 10.43994352 10.16860509 10.56988658 10.06970452 10.76098585 10.30788973 10.37661806 10.27632565 126708257 katE Stress Oxygen stress Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 8.303793395 8.169986507 8.066619321 8.094333957 7.828268458 7.998416128 8.194356871 8.390033469 8.122399237 7.751050287 8.060023819 77920469 NiR Nitrogen Assimilatory N reduction Pelobacter carbinolicus DSM 2380 8.138977105 7.964782399 8.149325683 7.542011568 8.078722262 7.800816134 8.10313505 7.511559932 207738872 mer Metal Resistance Mercury Ralstonia solanacearum IPO1609 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 8.374515803 8.476538984 8.48909528 8.547420461 8.32412753 8.309053214 8.174122026 8.490750985 8.343260916 8.376924313 8.362608632 8.330161118 182434300 proV Stress Osmotic stress Streptomyces griseus subsp. griseus NBRC 13350 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 9.221517905 9.193410522 9.30260595 8.781998588 8.97777867 8.84496937 8.876537314 8.967499682 8.665769003 9.151872304 8.856725252 8.898896563 219677178 pimF Organic Remediation Aromatics Aromatic carboxylic acid gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 9.504448106 9.489253536 9.447127385 8.797755843 8.628386356 8.636083921 8.659264393 8.892033522 154300686 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 8.559197182 8.941922899 8.47098764 8.38714965 8.346628871 8.75925407 8.330449957 7.980319317 7.758182291 8.699129971 148273704 iro virulence Clavibacter michiganensis subsp. michiganensis NCPPB 382 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 8.178493907 8.500456265 8.649295295 8.311219516 8.4012316 8.511496838 8.453174404 8.862709937 8.172100378 71366705 CODH Carbon cycling Carbon fixation Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.947842441 8.721044122 8.645398393 8.347388182 8.163938989 8.189023002 8.669256103 8.219770009 8.532300396 8.366581409 8.461448722 8.214190354 227349379 srt virulence surface protein Corynebacterium pseudogenitalium ATCC 33035 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium pseudogenitalium; 8.760420645 8.865842562 9.028213934 9.002702543 8.927549209 9.226679307 9.184196619 9.58990995 8.990572999 9.480900624 9.427211563 8.79387755 86565795 Xamo Organic Remediation Other Hydrocarbons Frankia sp. CcI3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.24114748 8.302830912 8.738507868 8.667561509 8.606377294 8.443819248 8.547410305 8.629244143 8.603426782 8.598691184 8.436100319 8.539537359 225388459 rubisco Carbon cycling Carbon fixation Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 9.739438467 9.778884228 10.21705673 9.443021426 9.271880636 9.017818747 119819014 catB Organic Remediation Aromatics BTEX and related aromatics Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 9.666036091 9.549977292 9.602907394 9.010992085 9.362951617 9.312326969 9.771613863 8.894294547 9.833762161 9.353652272 9.60630034 9.454755962 9658291 amyA Carbon cycling Carbon degradation Starch Vibrio cholerae O1 biovar eltor str. N16961 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 8.735180495 8.210553128 8.289932269 7.827926261 7.849295926 7.471765799 7.282294741 7.924382666 8.192848273 7.857483717 7.791481559 7.96771052 110680036 dehH Organic Remediation Chlorinated solvents Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 9.097424558 9.295346841 9.319119512 8.848674597 8.699227212 8.703353346 8.532365648 8.385426181 8.75294078 8.362142002 8.548200098 8.778768707 115397177 exoglucanase Carbon cycling Carbon degradation Cellulose Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 8.282466144 8.48295716 8.747536365 8.408853437 8.608543219 8.417698768 8.485818848 8.435996756 8.379692418 8.286198622 108798344 benAB Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium sp. MCS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 9.07202756 8.729221378 8.717468131 8.992180647 8.873847459 8.651966034 8.642382417 9.122422382 8.771584412 8.97017555 8.76912953 8.480723791 126705681 hrcA Stress Heat shock Rhodobacterales bacterium HTCC2150 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 9.21590795 9.159452877 9.112784593 8.334787068 8.059337509 8.035927485 7.969488718 7.73694947 8.27960931 8.248350055 8.394835472 109626259 phn Organic Remediation Herbicides related compound Haloquadratum walsbyi DSM 16790 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloquadratum;species:Haloquadratum walsbyi; 8.974507796 8.979638906 9.199635199 8.441382487 8.23639126 8.429385951 7.850702502 8.010994065 8.126024528 8.066134988 8.484201075 260457718 ureC Nitrogen Ammonification Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 8.449450607 8.69807315 8.445498631 7.808484788 8.183533908 8.617896377 8.812538804 8.338853559 8.392957131 8.291606611 8.496585405 8.317236682 52629576 glnA Stress Nitrogen limitation Legionella pneumophila subsp. pneumophila str. Philadelphia 1 8.000665283 8.016554492 7.340202323 7.290812143 7.229858251 6.908310442 6.920651097 7.598648977 7.03707243 7.105946495 7.401662392 219720367 pilin virulence pilin Stenotrophomonas sp. SKA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 8.543578529 8.484235866 8.70773149 8.530767539 8.512271173 8.410358957 8.584836473 8.672912667 8.429639519 8.497491194 8.418721823 8.141353432 218883826 CopA Metal Resistance Copper Desulfurococcus kamchatkensis 1221n superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Desulfurococcus;species:Desulfurococcus kamchatkensis; 8.554324902 8.540339845 8.824324982 8.19824855 8.132217487 8.067931108 7.738188802 7.518488285 7.905505984 7.999936347 7.737486337 8.172309394 116249484 fnr Stress Oxygen stress Rhizobium leguminosarum bv. viciae 3841 8.790412817 8.565072918 8.395992208 8.957440553 8.322277735 8.386698656 8.78993139 8.67085987 8.789145374 8.722262247 8.710492735 8.655584008 114543658 glnA Stress Nitrogen limitation Roseovarius sp. HTCC2601 9.104207779 8.902130921 9.275712534 9.147795151 9.223541014 8.878961599 8.891259464 9.51260514 8.816841796 9.337418406 8.968145133 9.194441714 146402652 sulfite_dehydrogenase Bioleaching Sulphur Acidiphilium cryptum JF-5 8.786011375 9.026319337 8.864280062 8.347763511 8.244635703 8.304604078 8.210990447 8.223536618 8.156771139 8.308568104 8.49962024 8.650071177 159898838 sigma_24 Stress Sigma factors Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 7.820842065 7.768861461 7.252480965 6.977392535 7.359472786 7.463205213 7.25180524 7.442343089 83316846 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.81233982 8.856704062 8.846296352 8.245852854 8.150059247 8.111379416 7.968707596 7.934157629 8.273033415 8.031439572 8.087290809 8.34197456 146396415 mer Metal Resistance Mercury Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 8.927909573 8.865389525 9.109514233 8.040239021 8.185497748 8.184355208 7.867296883 8.238718331 8.131720031 8.029167921 8.529746906 118049695 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.858485125 9.031899615 8.950656598 8.319243669 8.084893268 8.131715721 8.031145395 7.729921736 7.996725536 7.877464821 8.359677562 67919998 ChrA Metal Resistance Chromium Crocosphaera watsonii WH 8501 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Crocosphaera;species:Crocosphaera watsonii; 8.514900547 8.514295296 8.742862029 7.862867859 7.537174704 7.60922159 7.549022367 7.472281946 7.889070911 7.696285533 7.523656931 7.921035831 148257619 oxyR Stress Oxygen stress Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.166921265 8.343187104 8.271638303 8.141323053 8.078965397 7.865096568 8.200900474 8.22313239 8.045133718 8.138034809 8.057696015 255994475 sigma_70 Stress Sigma factors Eubacterium saphenum ATCC 49989 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium saphenum; 7.318913778 7.341934017 7.262904578 6.928140526 6.713583714 7.617100864 7.047642505 7.042093945 115372537 linC Organic Remediation Pesticides related compound Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 8.873713291 8.843710701 9.083183952 8.10707639 8.486371957 8.203330225 8.169355981 8.027407508 8.106379104 7.949654621 8.366802089 111021660 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.145855297 8.098311185 8.432473209 8.212563193 8.398212622 7.89558393 8.609908281 8.230063451 8.263309885 8.386600748 8.179722336 193086964 clpC Stress Protein stress Chlorobaculum parvum NCIB 8327 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum parvum; 8.685971294 8.688116626 8.088599216 7.991181539 7.957054138 8.252785516 8.825988731 8.264206743 8.4919416 7.902221785 8.268983433 7.898384705 112821411 czcC Metal Resistance "Cadmium,Cobalt,Zinc" Sphingomonas sp. KA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.649354723 8.621147778 8.570813722 8.308875088 8.10784605 8.189184003 8.013028096 7.813785463 8.569947663 7.745347999 8.035650519 8.447259801 93451380 narI Stress Oxygen limitation delta proteobacterium MLMS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 10.09755017 10.16236693 10.11315152 9.592792306 9.681810618 9.908783524 9.458851843 10.11871763 10.1658505 10.28055876 9.881275579 116094583 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Lactobacillus gasseri ATCC 33323 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus gasseri; 8.767391906 8.550834619 8.760305048 8.137423463 7.97880277 8.022219518 7.753488974 7.419503031 8.14189595 8.015078039 7.920597913 8.126288146 42566464 sigma_70 Stress Sigma factors Deinococcus proteolyticus superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus; 10.10065856 10.28357223 9.843940971 9.729513478 9.859306461 10.17093484 10.49412512 10.24159302 10.34930821 9.578128143 9.593578411 9.771320135 218244507 obgE Stress Radiation stress Thermus aquaticus Y51MC23 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus aquaticus; 8.923922195 8.763069953 8.373682737 8.217324343 7.923238267 8.080969284 8.303129316 8.200229296 8.093809557 8.403971405 154310566 phoA Stress Phosphate limitation Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 9.033387188 9.476240725 9.295585601 7.988710595 8.334101061 8.898458873 8.612199995 8.579549343 111022207 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 9.636621517 9.482637076 9.496485424 9.173951135 8.922073146 9.118875742 9.400113664 8.970255543 9.257083803 9.159915372 9.128505293 9.109185672 67523237 pheA Organic Remediation Aromatics Other aromatics Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 8.366240407 8.482110767 8.607573566 7.958574671 7.791234988 8.00134526 7.865373897 7.35151697 8.421524093 7.746697956 7.737102876 8.046574042 149817772 vanA Carbon cycling Carbon degradation Others Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 8.847622176 8.981071799 9.043686879 8.864271072 8.795431833 8.603460804 8.771798068 9.365930757 8.979451909 9.271514419 8.980364696 9.154303073 115360324 BADH Organic Remediation Aromatics Other aromatics Burkholderia cepacia AMMD superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 8.956041705 8.937365925 8.64064846 8.376905365 8.381291905 8.372693852 8.401078982 8.098179652 8.512137111 8.247452154 8.124970722 8.282698959 158338143 atzA Organic Remediation Herbicides related compound Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;genus:Acaryochloris;species:Acaryochloris marina; 9.228989294 9.14622413 9.423245366 8.691692005 8.43550465 8.385181289 8.07303271 8.130061209 8.153909857 8.431596126 8.205845492 8.537591609 73749260 PceA Organic Remediation Others Dehalococcoides sp. CBDB1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 8.113397567 8.325037755 8.009245975 7.976041804 8.072214373 7.967970889 7.899777114 7.866814166 7.902179521 227951638 pstC Stress Phosphate limitation Meiothermus silvanus DSM 9946 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 8.688369396 8.620331437 7.87535605 8.527605025 8.548275951 8.925311523 8.594864787 8.835820655 8.441093173 8.576640016 8.2715674 86159485 cytochrome Energy process Energy process Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 9.782055703 9.775100205 9.9529188 8.926839982 8.981396672 9.034891088 8.777785402 8.728841757 8.887319662 8.96620023 9.088420621 9.264404049 77458489 katE Stress Oxygen stress Pseudomonas fluorescens Pf0-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.612186676 8.521761874 8.403802638 8.873366586 8.572661029 8.419020427 8.848183036 8.809937408 8.512983255 8.576318588 8.465185149 8.602762873 168700059 sigma_38 Stress Sigma factors Gemmata obscuriglobus UQM 2246 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata;species:Gemmata obscuriglobus; 9.541573797 9.291124064 9.113148327 9.824934852 9.459277331 9.266272102 9.821988399 9.682030014 9.518313296 9.834528305 9.721901352 9.557920495 57207889 Catechol Organic Remediation Aromatics Other aromatics Wautersia numazuensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 8.283613683 8.236571072 8.513294801 8.482173284 8.335890698 8.257563927 8.333570585 8.240929387 8.339255972 7.997954964 254443231 mannanase Carbon cycling Carbon degradation Hemicellulose Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 8.006877637 7.924608762 8.051870085 7.661419122 7.731107068 7.738908867 7.684322406 7.981817362 7.512439343 283846936 obgE Stress Radiation stress Bacillus cellulosilyticus DSM 2522 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cellulosilyticus; 7.502660404 7.196511583 284015962 arsM Metal Resistance Arsenic Haloterrigena turkmenica DSM 5511 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloterrigena;species:Haloterrigena turkmenica; 8.008994685 8.042821248 8.134768514 8.046817954 7.675860756 7.807472185 7.764497921 7.888489817 7.742203083 7.76785175 7.530400163 150398462 AceB Carbon cycling Carbon degradation others Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 7.393144609 7.185917144 214028622 sox Sulphur Sulphur oxidation Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 9.587885532 9.186082245 8.959054651 9.518120352 9.436846756 9.494882861 9.836033026 9.631818984 9.182728718 9.077094428 9.067136016 8.957623695 258554867 sigma_24 Stress Sigma factors Nakamurella multipartita DSM 44233 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 8.963123407 8.80542458 8.812182553 8.90777631 8.96997043 8.663618225 8.793637018 9.352974555 8.939022747 9.159452885 9.063213541 8.904224497 133778462 gyrB other category gyrB Leptospira santarosai serovar Shermani superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira santarosai; 8.391813157 8.539745473 8.709148687 7.959659785 8.015370894 7.861870266 7.691549341 8.017677414 8.056261268 7.871211557 7.688488655 7.813500218 148253499 pstC Stress Phosphate limitation Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.956835574 8.906255843 8.611394801 8.814676152 8.511269173 8.497196438 9.070434049 8.963284986 8.761429215 8.922633986 8.965288921 8.833144714 2539 mnp Carbon cycling Carbon degradation Lignin Coprinopsis cinerea 8.836261285 8.903500137 9.039487559 8.418388926 8.476633069 8.410830822 8.656021153 8.506577264 8.410740705 8.365671359 8.63561343 269142106 pstC Stress Phosphate limitation Brevundimonas subvibrioides ATCC 15264 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas;species:Brevundimonas subvibrioides; 8.540744611 8.139722672 8.197383109 7.944413124 7.714136576 7.916341366 7.873858338 7.8823781 7.772810929 7.700763158 256742382 pstB Stress Phosphate limitation Thiomonas intermedia K12 8.62088679 8.563990308 8.590854247 8.059845572 8.08043 7.862227332 7.968852921 8.227678222 7.904534471 7.900419024 7.737000919 8.131333481 133740352 CopA Metal Resistance Copper Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 9.427227638 9.25790574 9.695742454 9.553668971 9.738585682 9.617665428 9.843688402 10.23783786 9.566161399 9.987771175 9.71780834 9.980895943 114227416 ppx Phosphorus Phosphorus utilization Alkalilimnicola ehrlichei MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 8.503025733 8.252518225 8.463024936 8.125786814 8.020037448 8.064361666 8.221690321 8.075655552 8.571479274 7.824316941 7.972081343 8.121534767 254407454 Tet Antibiotic resistance other Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 9.066900818 8.982901366 9.21590611 8.715207444 8.706425709 8.70450471 8.706943875 8.585388576 8.700460462 8.676059865 8.943566943 8.841488323 83317126 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.99476196 8.888092193 8.929208311 8.716614602 8.586361085 8.602259668 8.586834767 8.974167234 8.550779048 8.636441438 8.689550692 8.83155 46136487 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 8.447827104 8.600729615 8.363818137 7.963896005 8.395692977 8.812661458 8.990688767 8.567682402 8.896559628 8.692969737 8.53373225 8.864336826 237637151 nirS Nitrogen Denitrification uncultured bacterium 9.640015631 9.724419444 9.239142853 9.418611658 9.449937195 9.277317089 9.841926159 9.666178139 9.783278269 9.398862541 9.580355218 9.686634682 218666320 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Acidithiobacillus ferrooxidans ATCC 23270 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 8.388114362 8.202061245 8.490985545 7.868859364 7.821255878 7.860273043 7.842258923 7.803745001 8.140447645 7.859716598 7.789182259 8.091935368 170767196 nagG Organic Remediation Aromatics Aromatic carboxylic acid Escherichia albertii TW07627 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 8.652769866 8.519367981 8.440117887 8.256699323 8.165027703 7.943413419 8.119553903 8.06445793 8.047614015 7.989493585 8.046262546 8.126269139 167589862 silC Metal Resistance Silver Burkholderia ubonensis Bu superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ubonensis; 8.285425976 8.350018212 7.853293343 7.573525901 7.856008225 8.027051519 7.940714701 7.777130129 7.827833635 157083059 SMR_antibiotics Antibiotic resistance transporter Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 9.784130733 9.489951086 9.580579324 8.775906042 9.312798946 9.258762269 262309733 phoB Stress Phosphate limitation Acinetobacter lwoffii SH145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter lwoffii; 8.326941217 8.350405747 8.252643131 7.865350778 7.991314641 8.274776163 8.25964863 8.052715111 8.318527171 8.341174365 8.498457748 8.540693396 85059884 proX Stress Osmotic stress Sodalis glossinidius str. 'morsitans' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Sodalis;species:Sodalis glossinidius; 8.539355559 8.57775134 8.309262081 8.724608328 8.835588866 8.666444928 9.273552332 8.96183475 8.842951571 8.999037399 9.151977409 8.805887957 93355309 gyrB other category gyrB Ralstonia metallidurans CH34 9.32083207 9.191580903 9.238088297 8.907892413 8.874790152 8.651826932 8.799887544 8.738342009 8.714598811 8.761116771 9.060975904 8.979336736 62484827 bco Organic Remediation Aromatics Aromatic carboxylic acid uncultured bacterium superkingdom:Bacteria; 9.072530637 8.661064075 8.760841836 8.187861895 8.443202754 8.316815445 8.540785439 8.474353162 194307888 obgE Stress Radiation stress Pelodictyon phaeoclathratiforme BU-1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 8.622323555 9.08545308 8.990089301 8.57984239 8.549364447 8.594038931 8.340355681 8.336696945 8.731226421 8.698926291 8.575635112 8.408882294 3157662 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 9.102525087 8.765044735 8.697988647 8.884984831 8.788906207 8.524833571 8.956758306 8.796637965 8.758685024 8.757459919 8.683652154 8.844058167 209530540 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 8.511152972 8.838785146 8.544255834 8.921316275 9.009412367 8.751208031 8.956984049 9.402729313 9.142152516 9.124739508 8.912507348 9.014949454 255259614 pstB Stress Phosphate limitation Sideroxydans lithotrophicus ES-1 8.059662817 7.971707739 7.934976111 7.686615154 7.501312786 7.320125304 7.666841097 7.921367747 7.475695975 7.302987758 7.41711339 169759169 akbF Organic Remediation Aromatics BTEX and related aromatics Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.465068376 8.419662234 8.66454595 7.885181 8.053306308 8.19814238 8.508459547 8.141241482 8.514263064 8.280938067 8.34014604 8.169262378 150958888 atzA Organic Remediation Herbicides related compound Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.083736822 8.392763597 8.036254396 8.513547646 8.398283058 8.686582718 8.349298369 8.418163752 8.113807953 8.368117905 8.541821722 269216321 ppk Phosphorus Phosphorus utilization Slackia exigua ATCC 700122 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Slackia;species:Slackia exigua; 8.890714927 8.771625313 8.746102123 8.711354434 8.779503099 8.667489408 8.841180972 9.112448882 8.676625649 9.039158946 9.110793034 9.146046398 169242338 ppk Phosphorus Phosphorus utilization Mycobacterium abscessus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 9.23111044 9.090565267 9.246843776 9.70518599 9.382864901 9.46792753 9.706125359 9.526055272 9.53982642 9.19976263 8.983842566 163259436 catB Organic Remediation Aromatics BTEX and related aromatics Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 9.137932283 9.015645415 9.139778489 8.575531132 8.435176806 8.462808729 8.289294456 8.270126398 8.569844994 8.312505857 8.350035567 8.752980541 19909549 gyrB other category gyrB Mycoplana dimorpha superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Mycoplana; 11.07187734 11.1451353 10.97470258 11.22666095 11.19357712 11.1505924 10.92885403 10.8350776 10.96447777 11.13378127 11.13577766 10.83551648 218658454 nhh Organic Remediation Aromatics Nitoaromatics Rhizobium etli IE4771 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.920815713 8.65177317 8.604675354 8.305680849 8.242998329 8.341443008 8.56239253 7.900644954 9.043714691 8.320776114 7.971459361 8.288680055 270506494 sigma_70 Stress Sigma factors Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 9.65683071 9.496643814 9.652278072 8.884495734 8.922757364 8.888481112 8.718553159 8.788660135 8.691543382 8.830178615 8.82288145 9.201164622 114320264 phoB Stress Phosphate limitation Alkalilimnicola ehrlichii MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 8.789805836 8.691976129 8.673935477 8.415085718 8.336514018 8.298731861 8.589937616 7.978090293 8.403740036 8.737506862 8.431807487 154498377 sigma_70 Stress Sigma factors Bacteroides capillosus ATCC 29799 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides capillosus; 9.46347243 9.457918714 9.515327173 8.763271732 8.724748427 8.722408011 8.69478396 8.714494158 8.7051137 8.940173379 9.032480224 9.082621665 196189100 phn Organic Remediation Herbicides related compound Synechococcus sp. PCC 7335 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.663266569 8.321056956 8.618143987 8.546509641 7.908468687 7.791159107 8.363958073 8.955373656 8.262623136 8.622126564 8.458861928 8.765651847 154160040 CadA Metal Resistance Cadmium Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 9.12731868 9.40851972 8.924218447 8.953021303 8.839065122 8.917798216 9.167554734 8.628448966 8.97894008 8.504029153 8.666757116 8.566158787 280964281 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.839486944 8.735155907 8.908963935 8.600833089 8.652615856 8.312407423 8.707278472 8.994492099 8.751184834 8.953118941 8.794076467 9.109051895 257802726 xylA Carbon cycling Carbon degradation Hemicellulose Enterococcus gallinarum EG2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus gallinarum; 8.411005008 8.111583513 7.287100462 7.536260447 7.714746149 6.964253037 7.33042593 7.299158519 7.912051745 258570535 AceB Carbon cycling Carbon degradation others Uncinocarpus reesii 1704 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 8.83745993 8.956494392 8.426558341 8.806443497 9.109037056 9.052910408 9.667795242 9.468249871 8.956431031 192800684 nmoA Organic Remediation Aromatics Nitoaromatics Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.601953211 8.492594417 8.508488204 7.936966111 7.832740253 7.832426733 7.744251714 7.690432625 7.848511233 7.875369959 8.087251046 162072858 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 8.159598542 8.000107993 7.754571962 7.747077392 7.808320352 7.721903028 7.693831397 8.076618677 7.655224092 7.401344779 7.614487652 114737823 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 9.027072118 8.915408298 9.115296138 8.491871168 8.098174257 8.54102409 8.391150959 8.07187187 8.382262694 8.175679791 8.265237151 8.543592149 88863448 catB Organic Remediation Aromatics BTEX and related aromatics Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 8.591753183 8.240086574 8.10658373 7.818093635 7.604143222 7.984643232 7.856148897 7.904329426 7.249101311 7.622507361 7.978772847 118170486 NirB Nitrogen Assimilatory N reduction Mycobacterium smegmatis str. MC2 155 8.156726857 7.982008538 8.245742624 8.067271294 8.102243834 8.259919651 8.257160008 8.058046457 8.297213281 7.985599808 7.75940994 209516722 phtA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.685622246 8.645297149 8.710081026 8.052135889 8.223327767 8.011701885 7.619867721 7.836346134 7.553614836 7.5291231 8.043730665 52350471 ahpF Stress Oxygen stress Bacillus licheniformis DSM 13 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 8.747629418 8.363081852 8.485695713 8.04507646 8.016421108 7.838076945 7.960686036 8.468754709 8.44730778 8.388452265 8.276391687 8.263933292 91779751 sigma_70 Stress Sigma factors Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 9.067233402 8.92305589 9.045804261 8.925122336 8.858660675 8.887531837 8.56044334 8.919781691 8.688966898 8.922327333 8.997454694 8.699847958 85668555 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.479966657 8.50508817 8.352483193 8.296744556 8.268286609 8.222730927 8.263109134 8.185076955 8.540874148 8.177015576 8.08106837 8.034748911 84388670 katE Stress Oxygen stress Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 8.26409695 8.529733729 8.282177962 7.915209393 7.972470096 8.226679107 8.465081733 8.107452233 8.317345043 7.856842839 8.083689361 8.006293396 83593491 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 10.44633331 10.00513337 10.34693636 10.56522512 10.59478704 10.62643885 10.0271696 10.30054687 10.22105013 10.3379708 10.77067273 10.39628279 229823905 amyA Carbon cycling Carbon degradation Starch Catonella morbi ATCC 51271 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Catonella;species:Catonella morbi; 8.973132476 9.093610983 9.093880962 8.505184431 8.42534203 8.518256198 8.53472353 8.31006108 8.523857828 8.361067365 8.363270727 8.596630605 68135521 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.023794248 7.920663907 8.009452336 7.562592639 7.607860074 7.417978334 7.278537797 7.384661893 7.962488426 7.484058225 7.31252785 7.346769879 88701257 grpE Stress Heat shock Congregibacter litoralis KT71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 9.323225793 9.478496254 9.472237879 8.724108752 8.712678394 8.676448859 8.891941366 8.914596292 8.534489175 8.769018789 8.877566466 9.124384639 55978109 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.435531778 8.813460261 8.18623652 8.935915464 8.956909183 8.785547904 8.794781609 8.920202355 8.59679423 8.844206264 8.902641057 8.474373383 196221892 linB Organic Remediation Pesticides related compound Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 10.15791012 10.09428265 10.06835185 10.29328131 10.32768625 10.39473866 10.27483022 10.50282704 10.2161311 10.3826937 10.38427801 10.36198049 91717038 CopA Metal Resistance Copper Shewanella denitrificans OS217 8.440531127 7.87964793 8.178796828 8.183799397 7.467683031 7.678448376 7.427062651 8.015243766 7.804458071 7.871086351 7.370143743 89143190 gyrB other category gyrB Microbacterium ketosireducens superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium; 8.615076033 8.666650999 8.619001227 8.31671671 8.595940994 8.320838078 8.372489894 8.755827299 8.482583196 8.616424732 8.714415656 8.531870746 78093578 narG Nitrogen Denitrification uncultured bacterium 8.91269078 8.805936011 8.803153107 8.259398481 8.10474703 8.279240379 8.108449795 8.037034252 8.435556569 8.386866406 8.499937255 8.277748001 260454549 sigma_24 Stress Sigma factors Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 9.120548418 8.967899004 8.983512965 8.646859893 8.499046687 8.062000892 8.570432405 8.840747632 8.777430277 8.657615576 8.638109225 254243619 fnr Stress Oxygen stress Pseudomonas aeruginosa 2192 9.545743352 9.502944165 9.451382421 9.085310288 9.166450604 9.117196984 9.092400113 9.211926688 9.137457055 9.244448682 9.430071089 9.431249797 218143823 gyrB other category gyrB Desulfovibrio salexigens DSM 2638 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio salexigens; 8.833773321 8.916292646 9.075774588 9.112785595 9.163406973 8.750737397 8.362415853 9.003555627 8.317131439 8.673627643 8.460427055 9.060165177 99083177 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.167671868 7.94238126 8.099280737 7.450033649 7.370488515 7.298542947 7.065107657 7.128892148 7.480184863 7.301999569 6.915980754 7.01219452 188579415 fnr Stress Oxygen stress Methylobacterium populi BJ001 8.901923091 9.015520221 8.850342457 8.642416002 8.986449595 9.113575981 9.319830449 9.334675546 9.036341126 9.195706127 9.011208454 9.057181647 161392725 Mex Antibiotic resistance transporter Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 7.122950613 7.083946546 6.766725072 7.500675916 6.782230948 6.915141715 161339347 catechol_B Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 8.259789342 8.751998027 8.606366989 8.418477565 8.617522552 8.400969756 8.885298845 8.667161147 8.33846256 8.535135847 8.755863244 8.29693548 27356185 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.972486681 8.893236046 8.894050492 8.07923142 8.836230637 8.823956524 9.123026526 7.561542222 9.040110572 8.378494085 8.419075364 8.623181588 183178315 akbF Organic Remediation Aromatics BTEX and related aromatics Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 8.89964193 8.939627086 8.924377679 8.682233785 8.33578654 8.076871845 8.019201822 7.980076073 8.123307696 8.26856692 8.384423745 241216097 katE Stress Oxygen stress Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 8.881800719 8.815563173 9.133357544 8.320343067 8.320680945 8.304976673 8.70118226 8.352634944 8.417259624 8.493348774 8.469593029 23491841 gyrB other category gyrB Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 8.523311511 8.279220512 8.177575078 7.822057898 7.536055727 7.799470618 7.728850348 7.946688267 7.525325289 7.508560579 7.536980816 126166597 glnA Stress Nitrogen limitation Pseudomonas aeruginosa C3719 8.276126002 7.995553632 8.068947995 8.00164462 7.656551997 8.104667193 7.98492368 8.049159802 7.824359802 7.68972639 7.740983115 88178049 nagG Organic Remediation Aromatics Aromatic carboxylic acid Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 10.32855219 10.52546814 9.958591121 9.887637192 10.1509662 10.34680735 10.76785679 10.18567289 9.98971127 9.954186331 9.945569389 9.747718793 56380307 ureC Nitrogen Ammonification Geobacillus kaustophilus HTA426 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus kaustophilus; 8.773190905 8.421002116 8.50007311 8.766617711 8.512377336 8.11734401 8.674999767 8.546156583 8.208951565 8.243725364 8.46856197 8.066658701 134097188 alkK Organic Remediation Others Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 9.14196252 9.179149577 9.084966949 8.845951311 8.741571926 8.649861185 9.153555562 8.918556451 9.146592097 8.848672283 8.91912302 8.958264396 114738064 narH Stress Oxygen limitation Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 8.921901435 8.762166605 8.823593535 9.350633516 9.33904997 9.192787783 227949507 obgE Stress Radiation stress Meiothermus ruber DSM 1279 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 9.799150242 9.435714933 10.02615007 8.496913312 8.782482246 8.627860871 9.166142747 8.859389329 9.287653422 9.13814759 9.348491994 9.36556995 116195332 ara_fungi Carbon cycling Carbon degradation Hemicellulose Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 8.162675929 8.166250568 8.334394712 7.426655841 7.808025672 7.767171492 7.608787829 7.677913059 7.877388711 7.493244305 7.727938718 7.435489319 118169434 glnA Stress Nitrogen limitation Mycobacterium smegmatis str. MC2 155 8.834411698 8.793317919 8.752479278 8.377694196 8.403086878 8.632404678 8.74190466 8.29061088 8.812111547 8.57814748 8.297677646 8.388415806 167367269 gyrB other category gyrB Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.897938441 9.022694524 8.825634794 8.412988974 8.553856949 8.743366907 9.063977578 8.314965826 9.049053796 8.361006098 8.214590351 8.447249169 262086218 amyA Carbon cycling Carbon degradation Starch Gordonia bronchialis DSM 43247 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 8.617585791 8.818294352 8.432753173 8.550543635 8.73375681 8.963714559 8.81757182 8.958224863 9.228045663 8.957020646 8.999341632 8.901633402 214037008 sigma_32 Stress Sigma factors marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 9.328473326 9.523195498 9.042872822 9.145708786 8.972185486 8.903424568 82948308 ZntA Metal Resistance Zinc Magnetospirillum magneticum AMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 9.317918693 9.006170697 8.918717807 8.950736937 9.025104821 8.431594892 8.909346023 8.940568144 8.870653847 8.832237869 8.782304066 8.524914111 84515720 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 8.176147073 7.942357225 7.618664725 7.679719427 7.477314171 6.910600335 7.233267891 7.514157046 7.622593217 7.624427854 77868224 phn Organic Remediation Herbicides related compound Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 8.270018324 7.99342261 7.634280302 7.796805344 7.371471591 7.730963624 7.386593611 8.001113964 86152755 nrfA Nitrogen Dissimilatory N reduction Campylobacter jejuni subsp. jejuni HB93-13 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter jejuni; 8.303177458 8.210810157 7.65708994 7.892451025 8.058116207 8.105940552 7.868955163 7.666183098 7.97655434 7.672202544 62149224 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.701035544 8.722772274 8.811133266 8.318425146 8.264634166 8.25216542 7.92247417 8.240083763 8.196390895 8.372270571 8.359498849 8.454923879 126319890 tfdA Organic Remediation Aromatics Chlorinated aromatics Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.720857506 8.025301429 7.895559725 7.777366876 7.813296272 7.453487653 7.629722248 7.60655849 259033095 ureC Nitrogen Ammonification Mesorhizobium opportunistum WSM2075 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 8.828026896 8.615713365 8.649331075 8.998192607 8.825613291 8.694716412 9.002315418 8.770035374 8.700540109 8.51544448 8.596234914 8.397268528 116700355 ahpF Stress Oxygen stress Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 8.487058781 8.745603852 8.466528369 8.156793871 7.706598696 7.86445411 7.997645131 8.413062657 8.303357629 8.616961881 8.516429817 8.37443937 237501734 sigma_38 Stress Sigma factors Tolumonas auensis DSM 9187 8.466414966 8.219556013 8.538603431 8.266114892 8.191213188 8.179308371 8.008807427 8.327057119 8.110326315 8.113008648 8.213063776 7.778311348 86558194 sigma_70 Stress Sigma factors Synechococcus sp. JA-2-3B'a(2-13) superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.747717199 8.311508322 8.52418361 8.100398806 7.979364346 7.862871616 7.855588324 8.128980543 8.166608474 8.178492258 8.038475739 8.174322896 99030609 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 8.591262073 8.907207815 8.682690795 8.797773993 8.876394902 8.813257734 8.766136619 9.181912168 8.727522875 9.215193963 9.153484878 8.958408318 170101416 phenol_oxidase Carbon cycling Carbon degradation Lignin Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 8.542732287 8.46167248 7.665775809 7.667699139 7.474937797 7.207912471 7.307027055 7.629334006 7.517200252 7.282022499 7.574145628 151585111 atzA Organic Remediation Herbicides related compound Halorubrum lacusprofundi ATCC 49239 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 8.850251389 8.593678106 8.379186311 8.328071398 8.375160139 8.473869906 8.580826305 8.395794502 8.157737287 8.516592209 110287173 fnr Stress Oxygen stress Mesorhizobium sp. BNC1 8.111861913 8.172841259 8.319035109 7.911970485 7.480375597 7.814381602 7.898503112 7.530060265 8.037812697 7.405740024 7.610231547 7.813659015 46123737 groEL Stress Heat shock Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 9.485536653 9.308031802 9.122950692 9.28509535 9.042961309 9.164972669 9.489442589 9.238976132 8.914564526 9.254449843 9.364187446 9.030188967 217980160 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Thauera sp. MZ1T superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 9.591254674 9.146350186 8.983554367 9.484557508 9.525165059 9.373299994 9.224835057 9.823909055 9.12063792 9.65607903 9.604662011 9.682163206 169235405 pstB Stress Phosphate limitation Halobacterium salinarum R1 8.467411281 8.54520687 8.650970552 8.680777247 8.56498594 8.536432778 8.55152867 8.47406389 8.63251674 8.648335057 8.35928375 8.251134161 261857025 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.283872967 8.135272765 7.525702364 7.686174436 7.787177389 7.630269466 7.568270889 7.803544034 7.351241048 7.166438041 7.342971651 21243393 pilin virulence pilin Xanthomonas axonopodis pv. citri str. 306 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas axonopodis; 9.280308487 9.053839404 9.153162072 8.566489285 8.268131691 8.290662053 8.816969084 8.459600816 8.655128131 8.826586098 8.928486687 8.769071421 226313442 pcc Carbon cycling Carbon fixation Brevibacillus brevis NBRC 100599 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus brevis; 8.703280904 8.661534995 8.325960642 7.743011706 8.393361753 8.472008475 8.299117759 8.149605486 8.231668673 8.531363356 8.319761356 83573738 CopA Metal Resistance Copper Moorella thermoacetica ATCC 39073 8.686618013 8.455776973 8.631264376 8.506411747 8.317298351 8.261513813 8.69146965 8.508566541 8.312755441 8.32082832 8.357554505 8.247111077 154252063 linB Organic Remediation Pesticides related compound Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 7.549662053 7.235220503 7.601771558 6.718474316 7.056178686 7.556503718 7.34130475 7.018584609 110286692 sigma_32 Stress Sigma factors Chelativorans sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 8.454860165 8.744081045 8.468245155 8.692618004 8.692218463 8.159829873 8.649566057 8.648977271 8.219137706 8.664706631 8.272799826 208007709 iro virulence Aliivibrio salmonicida LFI1238 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Aliivibrio salmonicida; 8.153017647 8.137663003 7.194913399 7.145272486 7.05192097 6.983995568 6.660902827 7.54169446 7.10259265 6.999222093 7.457014677 169851160 phenol_oxidase Carbon cycling Carbon degradation Lignin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 8.211214522 8.262068758 8.386222557 7.434974556 7.733441191 7.590978148 7.676120898 7.797850083 115386584 pheA Organic Remediation Aromatics Other aromatics Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 8.521591483 8.465173245 7.963353506 7.698855366 8.001469349 7.749278134 7.543915712 8.048982626 7.913057948 7.834767595 8.224947285 184154878 xylA Carbon cycling Carbon degradation Hemicellulose Lactobacillus fermentum IFO 3956 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus fermentum; 8.291184341 8.400439499 8.4598325 8.129317907 8.065660914 8.086110787 7.839835115 7.85187849 8.650268794 7.793924557 7.950721719 7.711545587 19912057 gyrB other category gyrB Cytophaga sp. T-588 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Cytophaga; 8.375207684 7.876588237 8.0501993 8.053627207 7.600728806 7.94550999 7.662689514 7.938854336 7.586350073 7.40809354 7.627922728 227486598 nrfA Nitrogen Dissimilatory N reduction Anaerococcus lactolyticus ATCC 51172 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Anaerococcus;species:Anaerococcus lactolyticus; 8.387229111 8.011667298 7.364562817 7.013584596 7.349011376 7.331736704 7.011774491 7.50056749 170739921 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 9.097375934 9.395688529 9.237024606 9.120981371 9.12659043 9.057934546 9.251317082 9.499436775 9.312604429 9.599254771 9.390498439 9.555013684 163858139 narI Stress Oxygen limitation Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 8.619533472 8.433473367 8.378813211 8.374036567 8.444627659 8.356771794 8.482811466 8.915620579 8.575505695 8.661348116 8.408565715 8.583780256 187928897 CadA Metal Resistance Cadmium Ralstonia pickettii 12J 9.138447838 8.882305208 9.304698725 8.791731373 8.083403577 8.473781409 8.776219096 8.562239727 8.685121486 8.769196602 8.778401774 8.632476391 209498531 Catechol Organic Remediation Aromatics Other aromatics Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.301994068 7.399960073 7.265928521 6.981951721 7.077497084 7.453725117 7.325557902 7.151116233 7.491673809 111222038 alkK Organic Remediation Others Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 8.275462584 8.234619076 8.959592521 8.617180503 8.065475553 8.55583522 8.567416951 8.35126081 8.523603476 8.44353925 7.944962753 83755803 ppx Phosphorus Phosphorus utilization Salinibacter ruber DSM 13855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 8.614015905 8.539428343 8.045868276 8.051569541 7.908836416 8.094650311 7.881529434 8.044617853 7.733216295 7.692047333 115364090 ppx Phosphorus Phosphorus utilization Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 8.227179719 8.06622632 8.419697626 8.096157955 8.097007887 7.918192431 7.854949359 8.132370833 8.272993891 8.150686051 7.714313728 8.11571586 119386758 AceB Carbon cycling Carbon degradation others Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.772634538 8.95320565 8.665407012 8.457548703 8.104422864 8.374020485 8.786475544 8.331742493 8.526331592 7.925131402 8.163490716 7.82239592 124266448 sigma_38 Stress Sigma factors Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 8.965370338 8.719836593 8.744085696 9.064350571 9.147441074 8.940724189 8.765335776 8.758987727 256039369 sigma_24 Stress Sigma factors Chitinophaga pinensis DSM 2588 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 8.228950867 8.053029695 8.131688847 7.683117989 7.769219875 7.939262724 7.686086566 7.707279466 7.903785187 7.965009463 7.569756785 32487229 mdlB Organic Remediation Aromatics Aromatic carboxylic acid Nonomuraea sp. ATCC 39727 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Nonomuraea; 8.243869997 8.075075527 8.245978912 7.917123993 8.062671588 8.288975807 8.299602246 8.268043899 8.392113332 8.058209336 7.748850281 118665732 tftH Organic Remediation Aromatics Chlorinated aromatics Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.716687124 8.801064543 8.428867875 8.883413629 8.586340095 8.120428715 8.622995847 8.700047919 8.543763523 8.519415798 8.657752864 8.160183885 91190816 type_III_secretion virulence secretion Vibrio alginolyticus 12G01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 7.186126725 7.304185849 7.104484102 7.077138637 7.113425951 7.476429762 7.431374965 7.379093081 7.67622119 157285606 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 8.981529881 9.039919682 9.151920968 8.457824366 8.420134798 8.393608953 8.641226386 8.192092407 8.662842839 8.321190721 8.236021974 8.609614212 55773455 fnr Stress Oxygen stress Thermus thermophilus HB8 8.990226396 8.929259255 8.889774332 8.248946573 8.316144134 8.597809353 8.612583676 8.35843687 8.503956077 8.732693321 8.58626223 8.62301693 262308250 phoB Stress Phosphate limitation Acinetobacter lwoffii SH145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter lwoffii; 9.221228989 9.286654903 9.528418428 8.708319158 8.539246118 8.419283105 8.496940444 8.165787024 8.527695865 8.411844708 8.813335496 12659200 nifH Nitrogen Nitrogen fixation Treponema sp. ZAS-9 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema; 8.476226855 8.119169961 8.414966587 7.823593859 7.460590425 7.59731591 7.391840584 7.477694567 7.704172905 7.557373906 7.424480179 7.802692931 155964459 nasA Nitrogen Assimilatory N reduction uncultured marine bacterium superkingdom:Bacteria; 9.390671689 9.007652983 9.378960768 8.740195612 8.658922641 8.380138063 8.448499471 8.413757209 8.635820078 8.558003615 8.522298519 8.722069878 182636182 ArsC Metal Resistance Arsenic Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 9.090519346 9.364929823 9.052163462 8.678713003 8.946449503 9.463915499 9.746247531 9.056896647 9.646543392 9.018183166 8.885825932 8.902444373 170774621 pilin virulence pilin Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 8.318732783 8.119451582 8.400442926 7.805707413 7.808968435 8.07896345 8.5365038 8.228526028 8.711046964 8.047526281 8.208509411 8.104731844 118470516 limEH Carbon cycling Carbon degradation Others Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.708185033 8.389014783 8.497308381 8.842202303 8.979528251 8.801407975 8.313695344 9.169072695 8.549027527 8.81828878 8.593290246 8.830645266 156054490 pnbA Organic Remediation Aromatics Nitoaromatics Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 8.022526167 8.029254932 7.426373192 7.293878278 7.370357069 7.27913531 7.897816802 184198025 phtA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.390792282 8.578469704 8.111138488 8.320566117 8.333824182 8.318652918 8.386202728 8.387129937 8.608595975 8.472202134 8.574797279 118577309 nrfA Nitrogen Dissimilatory N reduction Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 8.533127349 8.783234919 9.032445971 8.11948178 8.162726617 8.117029227 7.81039501 7.863339223 7.891439639 7.989933731 7.943295164 8.361895931 110932002 nifH Nitrogen Nitrogen fixation uncultured marine bacterium superkingdom:Bacteria; 8.504130279 8.245275375 8.142687965 8.209275329 8.033630046 7.964701724 7.861360746 7.928580106 8.000770895 7.680419928 144901049 ureC Nitrogen Ammonification Magnetospirillum gryphiswaldense MSR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 9.998859712 10.1737874 9.926344673 9.876517578 9.547648014 9.591218311 121720168 ahpC Stress Oxygen stress Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 8.459153455 8.309323168 8.060558688 8.145288013 7.727055931 8.13549295 8.004203725 8.043540558 8.012748523 7.994293946 7.757606571 111223775 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 8.529335831 8.587913036 8.513783283 7.729356943 7.92615103 8.066974106 8.217848122 7.776790634 8.412915112 7.887745026 7.993035604 7.813130512 254284060 pilin virulence pilin gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.432313816 8.319098517 7.465110726 7.653440106 7.639585101 7.323938634 7.636917503 7.451940089 7.436860184 7.70818275 159039501 xylA Carbon cycling Carbon degradation Hemicellulose Salinispora arenicola CNS-205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 9.610650124 9.576097989 9.717805991 9.308144426 9.204908394 9.199707159 9.013894172 9.201611227 9.071360553 9.247529918 9.295099503 9.315519549 157314405 atzA Organic Remediation Herbicides related compound Thermotoga lettingae TMO 8.082603469 8.149433714 7.351118589 7.336285937 7.199291714 6.698124127 7.642778917 7.201740081 7.313392992 6580765 gyrB other category gyrB Zymomonas mobilis superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Zymomonas; 8.726271275 8.566623927 8.889666323 7.951214489 7.936038746 7.698097709 7.559084769 7.579020128 7.859963398 7.762939231 7.69206778 8.002916834 82795272 type_III_secretion virulence secretion Pseudomonas syringae pv. tagetis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 7; 9.653184025 10.25143962 9.616645378 9.02304034 9.008082923 9.844987614 9.575283519 9.226589101 269125820 sigma_24 Stress Sigma factors Thermomonospora curvata DSM 43183 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora;species:Thermomonospora curvata; 9.171279208 9.074151322 9.234909901 8.763453359 8.64344402 8.539367045 8.612059802 8.828185425 8.850418244 8.683597681 8.619473158 8.993804043 153797773 CopA Metal Resistance Copper Actinomyces odontolyticus ATCC 17982 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces odontolyticus; 8.634411321 9.187486534 8.864618144 8.88951074 9.082225052 9.086761412 9.166749474 9.248574305 9.162170217 9.512903821 9.142476208 9.222981593 126703567 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2150 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 9.858697194 9.660663808 10.0339729 8.795001479 9.10191481 8.908987991 8.996497743 8.994902493 8.89742216 9.12740318 9.086812987 9.418774445 81296437 Xamo Organic Remediation Other Hydrocarbons Mycobacterium chubuense superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.502705385 8.625716637 8.25789954 8.536355517 8.814446226 8.696971313 8.864883055 8.547534594 8.694485664 8.807321475 8.479570185 257867792 hly virulence hemolysin Enterococcus casseliflavus EC30 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus casseliflavus; 8.552421165 9.023403442 8.966993501 8.330418479 8.197098856 8.011494776 7.982034175 7.712777276 8.242549369 8.113283458 8.069761808 8.376482836 229473037 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 8.805924459 8.518798123 8.540776521 8.674679222 8.201751721 8.216141166 8.436592823 8.42091 8.395678793 8.37921228 8.157803003 239796062 hydrogenase Energy process Energy process Desulfovibrio magneticus RS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio magneticus; 8.666243544 8.602369065 8.449134513 7.995150036 7.838162861 7.897143577 8.019858367 7.745810961 8.264131865 8.057285051 8.015098992 7.94184161 255534424 groEL Stress Heat shock Flavobacteriaceae bacterium 3519-10 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae; 8.683266564 8.670246365 7.937188827 7.842614692 7.89650157 8.356626085 7.309815844 8.275282845 8.001010991 8.077560116 8.540431281 151208 endoglucanase Carbon cycling Carbon degradation Cellulose Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 9.437194951 8.794803447 8.737952334 9.646576366 9.403268517 9.212107428 9.530686903 9.223982573 9.488797127 9.066236837 9.074058222 8.925545999 260773542 sigma_38 Stress Sigma factors Vibrio metschnikovii CIP 69.14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio metschnikovii; 8.294474869 8.033932638 8.515718363 7.493044703 7.498548037 7.565709358 7.103122332 6.886775344 7.517240079 7.323122822 7.242876283 7.456098759 171912594 sigma_24 Stress Sigma factors Verrucomicrobium spinosum DSM 4136 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Verrucomicrobium;species:Verrucomicrobium spinosum; 9.701458135 9.748854955 8.535991198 8.531471945 8.636084572 8.657636673 8.618257982 8.615097579 8.704809065 8.833980067 8.799266043 113866392 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.474959297 8.263497881 7.862418001 8.076052208 7.981902749 8.08205411 8.316960843 8.609530672 8.343373557 8.026146962 226089071 sigma_24 Stress Sigma factors Gemmatimonas aurantiaca T-27 superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 9.094574219 9.190916321 9.6545847 9.647787966 9.486581409 9.047037344 9.356349652 9.943421464 9.100286763 9.675932986 9.455123148 9.541530708 221729505 hrcA Stress Heat shock Diaphorobacter sp. TPSY superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax ebreus; 8.563533382 8.585846039 8.677630416 8.336017658 8.723475357 8.526283089 8.208044718 8.445360775 8.73584062 8.542755231 8.597565145 118591384 bclA Organic Remediation Aromatics Aromatic carboxylic acid Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 8.569545665 8.392939545 8.562696338 7.884578321 7.730529749 7.857581267 8.097987615 7.809141502 7.829781121 7.661162147 7.751697638 113868272 MFS_antibiotic Antibiotic resistance transporter Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 9.113962457 8.759078605 8.626934677 8.327098585 8.219007449 8.337094433 8.215031317 8.167043118 8.013022754 8.362653688 172035799 pstB Stress Phosphate limitation Cyanothece sp. ATCC 51142 8.484059831 8.300458825 8.355493862 7.614710099 7.619376445 7.63852071 7.690753074 7.199788574 8.105306818 7.39872789 7.555688647 7.653762436 71554239 vdh Carbon cycling Carbon degradation Others Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 9.365705878 9.450543758 9.228490236 8.193314081 8.458431488 8.603303921 9.226647392 8.646226766 9.614763306 8.521375378 8.462199006 8.542260089 251808202 ahpC Stress Oxygen stress Gallionella ferruginea ES-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Gallionella;species:Gallionella capsiferriformans; 8.020478258 8.044296827 7.694770342 7.573054285 7.457923364 7.322955348 7.327283801 7.921118128 7.49819453 6.95101504 7.425650375 225643846 sigma_38 Stress Sigma factors Sulfurihydrogenibium azorense Az-Fu1 8.930691296 8.901197124 8.874125301 8.027325276 8.316792362 8.478986552 8.465853962 8.726101012 8.362088557 8.465327304 8.64673134 8.583739895 7110137 Van Antibiotic resistance other Paenibacillus popilliae superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 9.096040245 9.250803198 9.216399564 8.525321098 8.183891001 8.180961643 8.325142742 8.078093612 8.63779497 170727753 amyA Carbon cycling Carbon degradation Starch Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 8.964088452 9.120283855 9.238381126 8.540131216 8.528647028 8.526028655 8.473473741 8.385792442 8.204544047 8.298595977 8.258990799 8.72076304 112462395 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.192147418 9.05160875 9.131480338 8.661090851 8.500379357 8.5038799 8.692673651 8.936481137 8.755390214 9.049262279 8.737205104 8.748274033 190011539 pilin virulence pilin Stenotrophomonas maltophilia K279a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 8.446226373 8.554317233 8.217734235 8.177333836 8.04613255 7.483255165 8.121251347 8.037713877 8.302971875 7.707052453 7.801901137 7.844553473 162568501 aoxB Metal Resistance Arsenic Alcaligenes sp. YI13H superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes; 8.219829728 8.128462136 8.288948094 7.879952198 7.671334454 7.822979492 7.592783737 7.44763818 7.395982327 7.389037026 7.660371551 83852779 pstA Stress Phosphate limitation Oceanicaulis alexandrii HTCC2633 9.115942799 9.249416905 9.27662009 8.603803409 8.278750997 8.492140072 8.590248749 8.482717872 8.584817887 8.635415133 8.739833949 8.88317073 149917733 glnA Stress Nitrogen limitation Plesiocystis pacifica SIR-1 9.468849118 9.253272336 8.80788006 9.576325811 9.492057466 9.517590293 9.535469391 9.391640311 8.940184716 8.803550214 9.053765756 8.692373364 82702370 ureC Nitrogen Ammonification Nitrosospira multiformis ATCC 25196 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira;species:Nitrosospira multiformis; 8.495380835 8.397443237 8.673017363 8.114201848 7.947217278 8.174734113 7.823379785 7.805890019 8.044545706 8.086783511 8.40429735 8.297455462 38049254 mer Metal Resistance Mercury Enterococcus faecium superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus; 8.476942237 8.52936386 8.272869392 7.93729098 7.887845385 7.541470238 7.886850477 8.104926423 7.84623451 7.921349253 7.862131401 150954317 ABC_antibiotic_transporter Antibiotic resistance transporter Klebsiella pneumoniae subsp. pneumoniae MGH 78578 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 8.396189152 8.223723758 8.126105841 7.869925033 7.742169042 7.927535116 8.006183967 7.748376202 8.27944949 7.866467717 8.1079011 7.92928504 211957059 rd Organic Remediation Chlorinated solvents Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 8.468166157 8.582440064 8.61853545 8.63447332 8.513505639 8.646544493 8.255258876 8.491907555 8.791025014 8.94242727 8.413057296 227529171 sigma_70 Stress Sigma factors Lactobacillus vaginalis ATCC 49540 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus vaginalis; 7.857972231 7.971343563 7.03463669 7.091902738 121702879 ureC Nitrogen Ammonification Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 9.02412788 9.071635764 8.857576204 8.996048311 9.114864924 9.011757087 9.245201529 9.085585125 5360700 bphA Organic Remediation Aromatics Polycyclic aromatics Rhodopseudomonas palustris superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas; 8.387737003 8.568442191 8.916479175 8.583623167 8.210085898 7.826617165 7.852917681 8.205102523 8.37875821 8.270676224 8.509329019 33414834 terminase_small_subunit Bacteria phage REPLICATION Bacteriophage Aeh1 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 8.339883395 8.323675928 8.478441601 7.839514727 7.696336191 7.51086428 7.311620892 7.322552409 126717171 Catechol Organic Remediation Aromatics Other aromatics Roseobacter sp. CCS2 8.475123969 8.150868599 8.176460554 8.443891801 8.651723351 8.542657767 8.223476273 8.73464362 8.374010746 8.540584883 8.688343761 8.332181553 34104373 pimF Organic Remediation Aromatics Aromatic carboxylic acid Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 9.152395449 9.029214584 9.369796046 8.396749725 8.346404932 8.374537835 8.019270175 8.088067135 8.231627804 8.327735163 8.347113126 8.646816055 177839368 ara Carbon cycling Carbon degradation Hemicellulose Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 8.314303365 8.28190122 8.427713792 7.745006122 7.727769208 8.020276904 7.85537656 7.582280457 7.568025487 7.458049207 7.734904369 56459487 pilin virulence pilin Idiomarina loihiensis L2TR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina loihiensis; 9.001760434 8.828425212 9.09152869 8.625455094 8.69661434 8.562794082 8.53619904 8.822269323 8.425977582 8.81998722 8.789997198 8.853401062 220924353 sigma_24 Stress Sigma factors Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 8.710807022 8.587002973 8.711932925 8.508217359 8.358417711 8.144104436 8.256455107 8.416659066 8.390438894 8.363810134 8.167645295 8.261717322 62468090 bco Organic Remediation Aromatics Aromatic carboxylic acid uncultured bacterium superkingdom:Bacteria; 8.390147004 8.585562133 8.169119581 7.9594666 7.984088251 8.379037309 8.249873554 8.38745175 8.021357504 8.159240822 7.964479091 157374446 dmsA Organic Remediation Others Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 7.665856934 7.730947371 7.491680467 7.582713883 7.392840759 8.076343956 7.232380117 7.133658205 7.59270571 118592556 nahA Organic Remediation Aromatics Polycyclic aromatics Stappia aggregata IAM 12614 8.513834193 8.348717258 8.49297787 8.479968606 8.432264265 8.421599907 7.976565278 8.343437718 8.242494099 8.317360789 8.040346131 8.384030372 67850889 ureC Nitrogen Ammonification Clostridium thermocellum ATCC 27405 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 9.063742642 9.044105202 8.991358317 8.299254909 8.219464859 8.263751477 8.120373453 8.105086705 8.272485558 8.096106643 8.241249493 8.388850894 46096440 glx Carbon cycling Carbon degradation Lignin Ustilago maydis 521 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Ustilaginomycetes;order:Ustilaginales;family:Ustilaginaceae;genus:Ustilago;species:Ustilago maydis; 9.952411838 9.779306977 9.965230461 9.323521708 9.202280731 9.021504826 8.882468756 8.793359959 8.882263782 9.031330782 8.942038845 9.31803817 167731833 iro virulence Xanthomonas campestris pv. campestris superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 8.670412788 8.984496023 8.678527962 8.018857028 8.786751825 8.408971082 8.498380292 8.549032491 8.715213583 13446768 bphF1 Organic Remediation Aromatics Polycyclic aromatics Pseudomonas putida 7.091782649 7.025307938 91203320 groEL Stress Heat shock Candidatus Kuenenia stuttgartiensis superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;genus:Candidatus Kuenenia; 8.391428228 8.34464947 8.536801178 8.059175803 7.697814222 7.64637824 7.77427741 7.890435498 7.956778308 8.089085915 7.868092629 8.222229868 71736719 Arylest Organic Remediation Aromatics Other aromatics Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 8.212146883 8.144175181 8.209800895 8.11944517 8.14610418 7.885113847 7.647000987 8.044057364 7.942265698 7.779406085 7.919009544 149783239 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.070421478 8.855355921 9.25587408 8.702975793 8.660847994 8.279543697 8.828796561 8.805126304 8.56640486 8.358076463 8.425362848 148868418 oxyR Stress Oxygen stress Vibrio harveyi HY01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 8.136182673 8.350506788 7.204047908 7.350161442 7.363703763 7.399607308 7.101931452 7.938068334 7.021605727 7.519223746 95112268 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 9.457702982 9.443336146 9.073067055 8.537589481 9.224550787 9.309536939 8.837857234 9.574027375 9.075621813 9.132334284 8.988069216 197714537 katE Stress Oxygen stress Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 8.400075734 8.018654981 8.23933533 8.090883213 8.083569406 7.690881835 7.949771725 8.353106407 8.445630439 8.132000251 7.942520607 8.221009853 218750926 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.265326708 8.114501385 8.366526414 8.750648082 8.497596787 8.094994241 8.354469109 8.582089806 8.450865348 8.305887161 8.480904685 8.270241993 120588670 CopA Metal Resistance Copper Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 9.060157065 8.889499375 9.031938282 8.340388516 8.257303343 8.301851245 8.453441676 8.316243016 8.55322407 8.0629681 8.162999312 8.223035626 78224098 cytochrome Energy process Energy process Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 8.348705992 8.062336703 8.402387925 7.671810025 7.660686976 7.564547075 7.538099534 7.271888859 7.519759019 70730249 amyA Carbon cycling Carbon degradation Starch Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.702882954 7.514243001 7.332660362 7.504601222 7.409944303 7.847175068 7.185988471 7.204986535 153887635 ureC Nitrogen Ammonification Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 10.01421194 10.07295371 9.975682374 9.762731978 9.520400606 9.33489951 9.674026222 9.938040916 9.500211598 9.675056762 9.429282115 9.657254955 222477096 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 9.826296853 9.508079437 9.25941479 8.853320455 9.29210568 9.505857584 9.488850134 9.477449836 9.35425846 9.184276424 9.548337419 9.311820027 197103971 pstB Stress Phosphate limitation Phenylobacterium zucineum HLK1 8.773386467 8.970242575 8.817921118 8.862499276 8.964585957 8.879697221 9.104537817 9.254293464 9.021753119 9.257278804 8.903713574 8.88506714 119410920 phytase Phosphorus Phosphorus utilization Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 9.183235151 9.284175943 9.042692362 8.54284555 8.396417529 8.727826024 159045149 sigma_32 Stress Sigma factors Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 8.863847533 9.108885155 8.866202183 8.421284539 8.289196804 8.620122983 9.028477894 8.580484054 8.90438762 8.426385738 8.61160943 8.496407132 104783519 MFS_antibiotic Antibiotic resistance transporter Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 8.275080444 8.46978889 8.177978802 8.378930942 8.308791985 8.143064475 8.589402223 8.359117476 8.418175757 8.611783408 8.349176447 8.220061927 66391684 UvsW Bacteria phage REPLICATION Enterobacteria phage RB43 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 8.492965096 8.190681572 8.196963808 7.603456943 7.344467192 7.383961608 7.478850888 7.269807143 7.561619013 108463107 glnA Stress Nitrogen limitation Myxococcus xanthus DK 1622 8.59914439 8.406294536 8.36889813 8.01124764 8.345040121 8.127148917 7.993823442 8.232278124 7.899884271 229869622 B_lactamase_C Antibiotic resistance Beta-lactamases Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 8.438209764 8.195204243 7.46118807 7.745495971 7.721180786 7.267090471 7.391508732 7.534267168 7.531707908 17740053 gyrB other category gyrB Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.691445163 8.638407903 8.504836696 8.103093438 8.156570649 8.357233848 8.845892166 8.514987901 8.722046496 8.352212091 8.383759226 8.574720896 75674707 pstB Stress Phosphate limitation Nitrobacter winogradskyi Nb-255 9.029184742 8.943931298 8.747918037 8.351110124 8.653943767 8.317689101 8.296441645 8.71394824 8.644408604 8.767788103 8.799210601 148547362 AmiE Organic Remediation Aromatics Other aromatics Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 9.72340704 9.683338609 9.550326413 9.372661264 9.252963 9.262067137 9.180176524 9.099260246 9.258711014 9.200287424 9.301504675 9.369412053 221536022 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 8.157002268 8.22874008 8.754426833 8.40781591 8.25725612 8.023199603 8.316728018 8.525859111 8.42833766 8.389728012 8.295725957 8.42720123 124260163 fnr Stress Oxygen stress Methylibium petroleiphilum PM1 9.357752337 8.681064121 8.951266048 8.103673039 8.330350059 8.217677282 8.065170294 8.144910204 8.440571594 8.254966559 8.230885511 8.140559507 110816912 nhh Organic Remediation Aromatics Nitoaromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 9.435844185 9.466717854 9.583914922 8.782769127 9.38720578 9.557249024 9.897735598 9.063074266 9.918620155 9.270994263 9.502554363 9.696649158 219669387 Ni_Fe_hydrogenase Energy process Energy process Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 8.242395365 8.031695358 8.18313057 7.740386861 7.570891148 7.752375247 7.498987258 7.954476955 7.716795422 7.56572343 8.100593288 7.737631621 110632414 nagG Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 9.274827225 9.428415551 9.560645457 8.967330455 8.876534497 8.929663935 9.010335556 8.975466043 8.879324447 8.992267944 8.896221298 9.221189434 85694982 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Idiomarina baltica OS145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina baltica; 8.538010942 8.393543781 8.618226031 7.908636338 7.592804607 7.735995309 7.929209488 7.767432479 7.891431799 8.076488811 7.902381725 215408755 Catechol Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 9.184888718 9.055950764 8.961755549 8.589525356 8.531685854 8.641951718 8.315213947 8.528424121 8.4769884 8.374435888 8.702944222 8.658696096 256685140 ara Carbon cycling Carbon degradation Hemicellulose Jonesia denitrificans DSM 20603 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 9.556144886 9.584031773 9.851323034 9.140983655 9.457871857 9.230135351 9.429279953 9.8246326 9.586896782 9.70756278 9.484678064 9.700799363 71556831 CopA Metal Resistance Copper Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 8.470112933 8.558974295 8.583963988 8.163014116 8.354662232 8.777517033 9.019395405 8.436545592 8.81615502 8.547864094 8.382466572 8.323985722 39578139 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.344829889 8.114673186 8.314327253 7.648574251 7.603042711 7.755819164 7.47321907 7.541713921 7.813147728 7.669375777 7.689527845 8.039965201 167646405 CopA Metal Resistance Copper Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 9.1687391 9.140467783 9.004649995 8.573130096 8.650963632 8.605502409 8.694484488 8.523587361 8.628838694 8.630983576 9.002854328 8.974899606 148750870 single_strand_annealing_protein Bacteria phage REPLICATION Lactobacillus phage LL-H order:Caudovirales;family:Siphoviridae; 8.912416942 8.761283004 8.843026207 8.517720419 8.372515252 8.319687708 7.946651407 8.284384028 8.238256851 8.231551372 8.377890709 8.322836332 223585860 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.412838331 8.540029498 8.356482522 8.372088906 8.318720557 8.016031916 8.719246985 8.545918285 8.440991003 8.405827815 8.435605475 8.260150727 259032994 xylA Carbon cycling Carbon degradation Hemicellulose Mesorhizobium opportunistum WSM2075 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 8.655382909 8.693687941 8.674411419 8.602836059 8.259625886 8.663880186 8.510452776 8.5969747 8.477614453 8.714421137 8.366741834 41326581 pcaG Organic Remediation Aromatics Other aromatics Corynebacterium glutamicum ATCC 13032 8.399489724 8.462108069 8.857852026 8.25487645 8.160464396 7.963348261 8.073097481 8.475506666 8.456790441 8.37418435 8.242735136 8.356930115 16125199 pimF Organic Remediation Aromatics Aromatic carboxylic acid Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 8.345486302 8.359662924 8.795634952 8.679979608 8.535785501 8.1375329 8.613564993 9.071557187 8.896013725 8.87848358 8.501043754 8.720195727 256364205 Tet Antibiotic resistance other Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 9.142714668 8.949406225 8.415934653 8.822411745 8.564115801 8.399604648 8.857913782 8.634356508 8.838607972 8.674684701 8.697947522 8.59467217 119718977 atzA Organic Remediation Herbicides related compound Thermofilum pendens Hrk 5 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermofilaceae;genus:Thermofilum;species:Thermofilum pendens; 8.757959849 8.961407302 8.829427175 8.320111981 8.522321098 8.278022041 8.032052388 8.470436822 8.490861309 8.456422144 8.455253721 227844888 B_lactamase_C Antibiotic resistance Beta-lactamases Halogeometricum borinquense DSM 11551 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halogeometricum;species:Halogeometricum borinquense; 8.172899283 8.100517219 7.632029391 7.462372417 7.606140027 7.34439042 7.646937905 7.967788783 7.65158388 7.640084206 7.81579097 148499185 Catechol Organic Remediation Aromatics Other aromatics Sphingomonas wittichii RW1 8.56422664 8.816314922 8.593662813 8.955632037 8.646385266 8.295374616 8.749489411 8.791464281 8.681769026 8.71030488 8.339037745 8.275716771 126710207 glnA Stress Nitrogen limitation Sagittula stellata E-37 9.739154679 9.798551579 9.519589913 9.460031479 9.372031197 9.13698014 9.837564069 9.622497089 9.717860394 9.466164773 9.538186707 9.268170042 270505625 sigma_24 Stress Sigma factors Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 9.336592625 9.47012371 9.520292048 8.962927845 9.001920025 8.817380599 8.88138893 9.033200651 9.045634015 9.313518321 9.504441624 9.48916473 3378422 benAB Organic Remediation Aromatics Aromatic carboxylic acid Novosphingobium aromaticivorans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 8.424998605 8.031695358 8.15539783 8.338164449 8.117477429 7.99560716 8.00507838 7.91459374 8.259738816 8.0230189 7.9656007 7.811772206 219676494 proO Organic Remediation Aromatics Other aromatics gamma proteobacterium NOR5-3 8.347892691 8.468456111 8.63718639 7.971581743 8.293507307 8.260942993 8.470981882 8.908169836 8.398458775 8.689052476 8.304235755 8.268164568 182415090 linB Organic Remediation Pesticides related compound Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 9.491580346 9.297767357 9.296142238 9.052744322 9.099461581 9.092080599 9.201898442 9.248132348 8.858310005 9.297806825 9.015210062 9.393198939 119897081 pimF Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8.26966447 8.363789308 8.166715587 8.082321171 7.859530145 7.752437932 8.065841231 8.213234288 8.030261436 7.770864942 8.020511664 253701113 pstC Stress Phosphate limitation Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.819379875 8.925623597 8.900801716 8.829006537 8.894700445 8.810844108 9.024738248 8.813015167 8.827230969 8.975145576 9.143268953 9.040567844 197782166 PobA Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 9.298528015 9.73987469 9.474983073 9.781341728 9.839691214 9.654108493 10.16286914 9.90928237 9.834563248 9.905022918 10.12800625 9.787143207 78195144 phoB Stress Phosphate limitation Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 9.000626646 9.128086581 9.128279609 8.80144973 8.854514827 8.982905981 8.703057967 9.059237903 9.111059722 9.11746325 9.063725628 227424422 proV Stress Osmotic stress Denitrovibrio acetiphilus DSM 12809 superkingdom:Bacteria;phylum:Deferribacteres;class:Deferribacteres;order:Deferribacterales;family:Deferribacteraceae;genus:Denitrovibrio;species:Denitrovibrio acetiphilus; 8.771453514 8.545581294 8.131288038 8.461080612 7.961925067 7.94805964 8.053277237 8.126598719 8.602284365 8.018586156 218989010 phenol_oxidase Carbon cycling Carbon degradation Lignin Boletus edulis superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Boletales;family:Boletaceae;genus:Boletus; 8.893406828 8.821800655 8.764687903 8.488403208 8.512038522 8.438826884 8.494417763 8.609424288 8.815551825 9.081340686 9.130336649 8.921110798 47573016 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Rubrivivax gelatinosus PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 8.384176381 8.19560503 8.042906353 8.179457614 8.144994004 7.872357852 8.370772622 8.202614798 8.303299514 8.225709758 8.021313921 8.020554879 212711917 SMR_antibiotics Antibiotic resistance transporter Providencia alcalifaciens DSM 30120 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 8.376971504 8.594395024 8.689588173 7.825155369 7.623661823 7.949201517 8.005530396 7.731625772 7.61116082 7.833930649 7.926621756 209901764 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 8.402752898 8.648004055 8.167314051 8.052424235 8.286605978 8.149165318 8.084640638 8.589085028 8.709131484 8.241495809 8.248818728 8.124084357 209544809 pstA Stress Phosphate limitation Gluconacetobacter diazotrophicus PAl 5 8.855658012 8.71689155 9.087698466 8.268834964 8.175155603 8.066986419 8.283374487 8.026219142 8.856589295 7.893919172 8.049759621 8.06718267 121553397 pimF Organic Remediation Aromatics Aromatic carboxylic acid Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 8.18572854 8.284616118 8.521082257 8.12414541 7.904445948 8.116691875 8.223042099 8.097907282 8.612443742 8.273686956 8.266536079 8.088570483 38198157 Catechol Organic Remediation Aromatics Other aromatics Rhodococcus erythropolis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.48977289 8.387300529 8.579393039 8.645765809 8.412872677 8.276239459 8.465125497 9.097914458 8.723307878 9.029983243 8.677743256 8.89719787 225874122 pstC Stress Phosphate limitation Acidobacterium capsulatum ATCC 51196 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteria;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 6.693379692 7.35300728 62003549 narG Nitrogen Denitrification uncultured bacterium 8.892921625 8.782771363 9.04140876 8.438420931 8.467299794 8.257809387 8.147387909 7.99298158 8.144181066 8.189103136 8.038813296 8.375393758 254463841 sigma_24 Stress Sigma factors Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 9.59603893 9.47258541 9.378497209 9.8142893 10.00000956 9.887949766 9.717459278 10.29380971 9.432825671 10.02492836 9.874500121 10.1941621 148511729 CadA Metal Resistance Cadmium Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.201864458 8.303592474 8.369571664 7.930351829 7.838423093 7.977053307 7.442776228 8.07486479 7.64969903 7.89992953 7.920340375 240859881 fnr Stress Oxygen stress Rhizobium leguminosarum bv. trifolii WSM1325 9.982267047 9.888367516 9.753839935 9.378974083 9.328492574 8.970899072 9.4351934 9.442737128 9.612819695 9.485012709 9.250117337 9.346135824 145249444 pectinase Carbon cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8.2225791 8.285510929 8.33431547 8.261584431 8.498490621 8.029622042 8.088019783 8.51716226 8.006615426 8.389524959 8.269995462 8.21675948 187711187 groEL Stress Heat shock Anaplasma platys superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales;family:Anaplasmataceae;genus:Anaplasma; 10.47408976 10.45483044 10.39299081 9.188551386 9.570059223 9.993307794 9.23076901 10.39624567 9.945244697 10.11179498 10.16620461 146192148 nagG Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.788163345 8.868038077 8.93305825 8.884535539 8.660228082 8.567069872 8.818652617 8.878226437 8.837906885 8.687182561 8.577505648 8.502433159 259667450 oxyR Stress Oxygen stress Rhizobium leguminosarum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 8.092491955 8.106943282 7.851394886 8.098001569 8.254511484 7.870749112 8.308793865 8.130415496 8.107366821 7.916678577 7.807641561 145593722 TehB Metal Resistance Tellurium Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 8.784036179 8.934120463 8.985033225 8.651476688 8.990332325 8.911588126 8.871863494 9.3671785 8.809431278 9.062611087 9.155075919 9.128303874 2353784 T4_type_portal_protein Bacteria phage REPLICATION cyanophage S-BnM1 order:Caudovirales;family:Myoviridae; 8.469467221 8.61609861 8.277053359 7.865871768 7.707961726 7.270200185 7.298537409 7.885121191 7.525710247 8.026135998 88178809 endoglucanase Carbon cycling Carbon degradation Cellulose Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 9.070870889 9.265815101 8.900093218 8.252684637 7.924529652 8.858281032 9.27860571 8.928941066 8.909658544 8.528341734 8.983587297 8.885167131 87283736 sigma_70 Stress Sigma factors Synechococcus sp. WH 5701 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.814127973 8.885846851 8.858423989 8.577432382 8.603293492 8.732916112 8.977772809 8.718667483 8.682207482 8.944275869 9.072099022 9.19195974 25045816 cpnB Organic Remediation Other Hydrocarbons Rhodococcus sp. 789 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.022396671 8.088290626 8.116964864 7.304852475 7.414725515 7.606929883 7.682713803 7.940517233 8.046226889 7.861838978 7.538931335 7.797300752 227369374 katE Stress Oxygen stress Chryseobacterium gleum ATCC 35910 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Chryseobacterium;species:Chryseobacterium gleum; 8.732179236 8.946252449 8.92832826 8.191904245 8.183061239 8.11491893 7.955365739 7.937407331 8.078483707 7.800625916 7.932807642 8.300607969 225196697 pstB Stress Phosphate limitation Desulfonatronospira thiodismutans ASO3-1 8.267893105 8.528258045 8.717474887 7.959821799 7.741113159 7.926280876 7.502899416 7.545008383 7.757631111 7.355432258 7.96209455 196185286 sigma_24 Stress Sigma factors Brevundimonas sp. BAL3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas; 8.152778948 7.962955039 8.114253109 8.03849341 7.927047568 7.82185891 7.833106459 7.956234435 8.070275131 8.022088863 7.895960092 7.637672247 126236466 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.790728131 7.686817035 7.25056881 7.279248563 7.659081737 7.551701842 7.674761155 39983462 MFS_antibiotic Antibiotic resistance transporter Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 10.69827602 10.88889444 10.70815636 10.30477787 10.60484634 10.3389899 10.48834198 10.82265394 10.33759048 10.66971779 10.71011836 10.67260944 154157399 alkJ Organic Remediation Other Hydrocarbons Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 8.926751725 8.852987478 8.249543003 8.733218166 8.072144078 8.347650866 9.014872993 8.771780694 8.713413064 8.461742006 8.615037623 8.202040053 161387970 sigma_70 Stress Sigma factors Phaeobacter gallaeciensis BS107 9.335475062 9.407564676 9.304537316 8.755684135 8.849828265 8.815661095 9.253365001 9.159882274 9.460571775 9.090348565 9.160988905 9.03649743 119449752 pilin virulence pilin marine gamma proteobacterium HTCC2143 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.912943259 8.616689456 8.758809566 8.304315247 8.149082151 8.20390308 8.141251655 7.688046991 8.382440004 7.967612688 8.020500618 8.335367426 146342512 MFS_antibiotic Antibiotic resistance transporter Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 9.311038823 9.313507266 9.469220897 9.441667628 9.327729094 8.963018702 9.118782988 9.860782779 9.27620157 9.438964322 9.177020856 9.596384594 12720224 nrfA Nitrogen Dissimilatory N reduction Pasteurella multocida subsp. multocida str. Pm70 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Pasteurella;species:Pasteurella multocida; 8.683768011 8.122474159 8.385441737 7.999795204 7.562461376 7.701365405 7.447848581 7.160184828 7.79193039 7.452244248 7.558861631 7.830702052 112462479 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.744280118 7.727394088 7.626659713 7.609284981 7.92487879 8.188438654 7.780798772 7.632162421 7.736429295 84499236 mer Metal Resistance Mercury Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 8.697753024 8.967700937 8.702536166 8.107686023 8.482600706 8.471354807 8.970870863 8.710222205 9.010536223 8.33496065 8.50457229 8.289082701 259169017 ahpF Stress Oxygen stress Lactobacillus antri DSM 16041 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus antri; 9.711115633 9.600346752 9.571606638 8.95414425 8.903900544 9.102267028 9.010630022 8.867691948 8.859935066 9.086656312 9.237410044 9.255477519 270327272 iro virulence Acidovorax avenae subsp. avenae ATCC 19860 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax avenae; 9.459193875 9.428075945 9.410293703 8.730624684 8.565535688 8.89641924 8.926702402 8.80310978 8.913404966 9.045747121 9.061004325 9.16011071 254514049 ppx Phosphorus Phosphorus utilization gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.955843137 7.867456207 8.159865376 7.532043657 7.335401063 7.923203608 8.170143379 7.592360313 7.684464863 7.374861711 7.773552135 93355391 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 9.169565937 8.954175085 9.04085671 9.370616873 9.192126922 9.105808416 9.435610177 9.279303436 9.312824707 9.228602532 9.192813988 9.03036027 218751012 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.735313829 8.806689954 8.814415745 8.598291997 8.567606687 8.466831806 8.507172389 8.754812493 8.633206052 8.699482475 8.521842338 8.725042933 187717351 ahpC Stress Oxygen stress Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8.288223844 7.99750963 8.312051106 7.725595113 7.918963359 7.627809902 7.599084525 7.858043254 7.807207472 8.101296796 8.035641848 210150998 cda Carbon cycling Carbon degradation Starch Clostridium nexile DSM 1787 9.279599637 9.196890263 9.276210836 8.645617203 8.644122195 8.562581562 8.637031913 8.534012209 8.577897164 8.62726576 8.489304502 8.744597614 206685517 obgE Stress Radiation stress Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.163722056 8.157972485 8.312162489 8.248867091 8.070240596 8.027734211 7.963555583 8.420585682 8.236223618 8.270532683 8.418296917 7.92633162 149357989 linB Organic Remediation Pesticides related compound Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 7.487186193 7.67829116 84665810 pcc Carbon cycling Carbon fixation Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.592617561 8.690392084 8.314559649 8.446844647 8.423534082 8.16226963 8.303649951 8.635240213 8.518145357 8.438874146 8.482042412 89214401 nagK Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas alcaligenes superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 9.540592518 9.660672419 9.565226015 8.938734661 8.929385836 9.674459057 10.11711955 9.394202604 10.01864973 9.568738487 9.660751455 9.985621539 88177857 endochitinase Carbon cycling Carbon degradation Chitin Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 8.687171064 8.680341209 8.539095843 8.424021742 8.425326946 8.894161462 8.551568772 8.15800362 7.954725744 8.189742089 8.133611935 124267544 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 9.022990611 9.138747286 8.778300758 9.019424851 8.889721255 8.834999433 9.23701602 9.163036909 9.102328807 9.077603403 9.179135258 9.001258035 209537148 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 9.41609041 9.360660124 9.124879926 8.836132593 8.422305821 8.728775062 8.906162257 8.847349417 8.590715435 8.676458224 8.638484779 8.7717497 170657374 amyA Carbon cycling Carbon degradation Starch Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 9.848543117 10.49389076 10.48308281 9.895615712 10.02468523 9.876072182 10.16192077 9.830967527 10.53430946 10.31765155 10.43469517 10.20389171 214028779 glnA Stress Nitrogen limitation Ruegeria sp. R11 8.906384283 9.072462047 8.948424081 7.793519469 8.041750748 8.457265219 8.484266614 7.938562081 8.044116989 8.115139261 8.120841064 89100637 ChrA Metal Resistance Chromium Bacillus sp. NRRL B-14911 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.144994875 6.877952531 7.211700376 7.468163187 6.799353342 7.883003859 7.227017866 7.280701532 197210189 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 9.986296201 10.08600587 9.99653844 9.639995038 9.693922431 9.746163895 10.20570585 9.665077919 10.00586549 9.740861672 9.735697417 9.867684949 154246629 pcaG Organic Remediation Aromatics Other aromatics Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.672455028 8.613611081 8.679630979 8.732132064 8.658731282 8.415953756 8.421944246 8.826866257 8.539917625 8.659553764 8.646424369 8.461321564 145218055 CadA Metal Resistance Cadmium Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.144476842 7.924447571 8.246275746 7.861299951 7.974944023 7.918524392 7.619867151 8.094981284 7.56653061 2828018 bphA Organic Remediation Aromatics Polycyclic aromatics Ralstonia sp. U2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 8.284919296 8.170445338 7.488859739 7.329055418 7.616165745 7.813626947 7.035092242 7.367163796 7.217382128 7.231108085 111222526 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 9.004868143 8.962831909 9.004269924 8.987437646 8.932921662 8.880448981 9.003194543 8.993268908 8.897359331 9.191230068 9.00602312 9.091114501 118434552 mhpA Organic Remediation Aromatics Aromatic carboxylic acid Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 9.255468745 8.648282643 8.66267899 9.199241445 8.545545763 8.496199625 218760950 proV Stress Osmotic stress Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 8.580685146 8.688868092 8.754329216 8.110465398 7.878290499 8.000176365 7.58183983 8.149726815 7.689433483 8.005767308 8.197612585 27314546 merB Metal Resistance Mercury Staphylococcus epidermidis ATCC 12228 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus epidermidis; 8.562552963 8.676015725 8.47398108 8.572821576 8.31774409 8.123819659 8.491536662 8.556470982 8.666728355 8.365880288 8.120857906 8.274745768 257470531 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteria;order:Fusobacteriales;family:Fusobacteriaceae;genus:Fusobacterium;species:Fusobacterium ulcerans; 8.751066021 8.488986996 8.842633056 8.269763132 8.14406175 7.937721858 7.869618318 7.873664922 8.141773606 8.001680515 8.301983122 118027455 mhpA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.503201922 8.598657843 8.396189043 8.571075261 8.482827563 8.609945077 9.187047076 8.583082416 8.849499852 8.772143331 8.896982874 83575142 TerZ Metal Resistance Tellurium Rhodospirillum rubrum ATCC 11170 8.565303233 8.875309259 8.731814396 8.270633898 8.077871136 8.101229148 7.99410121 7.986194101 8.045086001 8.11693951 7.972819271 8.208164821 133910667 pimF Organic Remediation Aromatics Aromatic carboxylic acid Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 8.455952001 8.428214056 8.368031035 7.837841615 8.047861897 8.392429852 8.574576623 8.294648626 8.551488939 8.10952207 8.165071078 7.912926925 241463896 pstB Stress Phosphate limitation Allochromatium vinosum DSM 180 8.194019955 8.245361505 8.24114172 8.508358738 8.24719008 8.019773126 8.554939912 8.605037129 8.347481749 8.389941827 8.436556324 7.885052594 755163 clpC Stress Protein stress superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus;species:Synechococcus elongatus; 8.199024921 8.18883487 7.714556149 7.268816997 7.589917725 7.874468895 7.487461684 8.300503001 7.529147208 7.60437213 7.652907429 54027542 TerD Metal Resistance Tellurium Nocardia farcinica IFM 10152 9.715714344 9.802161761 9.581827566 10.35626647 10.07397593 9.895029486 9.990474612 10.22645692 9.933209359 9.845286022 9.766460226 9.77709635 206586677 alkK Organic Remediation Others Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 9.439533209 9.274046003 9.058799277 8.773040667 8.734885889 8.913863264 9.115778823 8.417197771 9.160253986 8.681321259 8.58714655 8.696871057 156938015 glnA Stress Nitrogen limitation Ignicoccus hospitalis KIN4/I 8.941297317 8.645505165 8.798646504 8.329768855 8.304267236 8.306960055 8.297848332 8.315976663 8.587330664 8.434136825 8.255461268 8.370517116 83842013 xylA Carbon cycling Carbon degradation Hemicellulose Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 8.446005995 8.378661652 8.16472388 8.363624298 8.467636187 8.194259622 8.322285356 8.765622186 8.515809233 9.009799726 8.579960131 8.468529974 56911575 alkJ Organic Remediation Other Hydrocarbons Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 8.185068385 8.549258907 7.202028654 7.357642952 7.381334039 6.917324235 7.706745572 7.290330096 7.470366053 58041827 nagK Organic Remediation Aromatics Aromatic carboxylic acid Klebsiella pneumoniae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella; 8.276156125 8.165059844 8.219046618 8.13153917 8.060937201 7.950091516 8.018868907 8.411490975 8.546841524 8.127059938 7.931453458 8.222189487 229330789 pstB Stress Phosphate limitation Geobacillus sp. Y412MC52 8.399439432 8.645992394 8.685824905 8.273842766 8.354116937 8.053049522 7.939512886 7.733302192 8.223043484 8.35130382 8.423385246 42523158 pstS Stress Phosphate limitation Bdellovibrio bacteriovorus HD100 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 8.694861905 8.339699356 8.465981493 8.068780025 8.144776813 8.285674869 7.99101249 7.942379691 8.042026695 8.17398064 8.273265189 209500047 cellobiase Carbon cycling Carbon degradation Cellulose Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 9.301822655 8.757384876 8.946261792 8.575874802 8.426325453 8.175699137 8.502681768 8.540537624 8.600551636 8.496760618 8.523004526 8.410830283 121589766 glnA Stress Nitrogen limitation Halorhodospira halophila SL1 8.773349792 8.6935407 8.926713751 8.298946584 8.186388016 7.908834141 7.975349616 8.295968778 7.90856108 8.302735563 7.9959293 8.430578924 255110064 sox Sulphur Sulphur oxidation Sideroxydans lithotrophicus ES-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Sideroxydans;species:Sideroxydans lithotrophicus; 9.264013224 9.14335642 8.878043338 8.262749086 7.711136629 8.439734178 8.59774207 8.102532379 8.140843615 8.142239619 8.460509158 67085616 CopA Metal Resistance Copper Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 8.006787314 7.974536686 8.09930581 7.370066758 6.983208768 7.385323905 7.425682639 7.0627506 6.892579684 7.332675868 219938983 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9.544319615 9.341359875 9.376186618 8.851831262 8.719426232 8.692520137 8.403534542 8.551787018 8.820147787 8.569098404 8.624730793 8.914170263 98976683 glnA Stress Nitrogen limitation Sphingopyxis alaskensis RB2256 9.317695324 9.225763915 9.329787438 9.211972404 9.156888726 8.886616781 9.334036276 9.20965897 9.259271534 9.38678635 9.461305978 9.1776155 159040859 APS_AprA Sulphur adenylylsulfate reductase Caldivirga maquilingensis IC-167 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Caldivirga;species:Caldivirga maquilingensis; 8.285954623 8.276466376 8.67386408 7.517085644 7.443975212 7.348127423 7.218465392 7.124062275 7.60390827 7.804283073 7.686202717 7.867583741 239981200 SMR_antibiotics Antibiotic resistance transporter Streptomyces albus J1074 8.813455955 8.067487719 8.926087619 8.279030726 8.108318377 8.579192754 8.604737063 8.571300581 8.587515261 8.638804049 8.121545666 118752393 trzA Organic Remediation Herbicides related compound Metallosphaera sedula DSM 5348 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Metallosphaera;species:Metallosphaera sedula; 9.193216235 9.275047155 9.450834509 8.839548952 8.880542428 8.793059729 8.712793581 9.159401445 8.925820761 9.204845414 9.055242875 9.077629012 171911600 ChrA Metal Resistance Chromium Verrucomicrobium spinosum DSM 4136 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Verrucomicrobium;species:Verrucomicrobium spinosum; 9.487429613 9.289608485 9.301360229 8.934143682 8.779531413 8.603364369 8.9419478 9.137655486 9.002210202 8.893248983 8.668681013 8.88889243 220717720 Catechol Organic Remediation Aromatics Other aromatics Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 8.45693365 8.301406636 8.357239403 8.317470504 8.198467239 8.212669488 8.223445704 8.249295113 8.443763751 8.431334833 7.877735371 134101131 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 8.071642851 8.492204257 8.164358259 8.027586533 7.688513762 8.018074856 8.462166568 8.438387541 8.363635104 8.307965202 8.456725821 261405493 ara Carbon cycling Carbon degradation Hemicellulose Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.971429476 8.818731754 8.824725396 8.611686719 8.15898337 8.224468274 7.957131789 8.147912084 7.934351203 8.166650058 8.029124417 8.438750029 7208642 B_lactamase_C Antibiotic resistance Beta-lactamases Aeromonas hydrophila superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas; 8.715574091 8.544234032 8.822290182 7.889633351 7.767954249 7.96970403 8.273481554 7.797613649 8.180157323 7.975813036 8.037762544 7.723502223 76260186 amyA Carbon cycling Carbon degradation Starch Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 8.010895962 8.058518384 151563089 glnA Stress Nitrogen limitation Ochrobactrum anthropi ATCC 49188 8.017905931 8.148619643 7.570368594 7.697775787 8.231974157 8.056249495 8.024422069 8.083128489 7.974210749 7.69261357 7.744456693 260429933 glnA Stress Nitrogen limitation Citreicella sp. SE45 8.451796638 8.50971086 8.394920724 8.824583203 8.811091823 8.603752404 8.651101205 8.924302593 8.501059975 8.741827762 8.652038545 8.46531894 114225966 nitA Organic Remediation Aromatics Other aromatics Alkalilimnicola ehrlichei MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 8.266321563 8.224312549 8.315781277 7.533932578 7.898508014 7.437117796 7.763562148 7.610413413 7.427020238 184194944 phn Organic Remediation Herbicides related compound Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.364761035 8.175916023 7.93708707 8.354302461 8.426758296 7.804146592 8.487569751 8.071144564 8.315338268 8.382163523 8.370736131 73762580 endochitinase Carbon cycling Carbon degradation Chitin Paecilomyces javanicus superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Cordycipitaceae;genus:Isaria; 8.359376307 8.445471617 8.775399272 8.170583312 8.27614668 7.923142123 8.132804068 8.39533243 8.31610645 8.253066099 8.10779387 8.366649747 254428204 pilin virulence pilin Alcanivorax sp. DG881 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 8.554526486 8.51958705 8.671738842 8.183830276 8.135905499 8.108539792 8.24331883 8.188673273 8.254004374 8.300423251 8.027071285 121606156 fnr Stress Oxygen stress Polaromonas naphthalenivorans CJ2 8.928234155 8.660276766 8.621947419 8.624779424 8.444185485 8.722310882 8.818242363 8.398686114 8.633296654 8.361718964 8.540696772 8.320027944 84368817 katE Stress Oxygen stress Xanthomonas oryzae pv. oryzae MAFF 311018 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 8.919834392 9.135930813 8.408862512 8.442958372 8.281314749 8.868162179 9.201270757 8.654756685 8.807789756 8.222656168 8.5538193 8.071448635 26278696 narG Nitrogen Denitrification uncultured bacterium 8.685264096 8.849867645 8.664346592 8.269068821 8.382182883 8.07597538 8.55257698 8.689261098 8.345603574 8.743674319 8.433587359 8.488183413 91978151 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.413898217 8.373339291 7.657259763 7.692670805 7.964010616 8.053878344 7.37526778 7.699604991 7.83921367 7.730443664 119225930 catechol_B Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 9.153820945 9.041152774 8.911113741 8.254132411 8.40848483 8.697243649 8.73242348 7.904163096 8.347140724 8.588392819 8.71302483 187921728 iro virulence Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 9.703581792 9.566452895 9.828602409 9.468309842 9.482578128 9.323798231 9.518108339 9.665498193 9.635284538 9.623149067 9.562400358 9.522739047 222111389 CadA Metal Resistance Cadmium Diaphorobacter sp. TPSY superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax ebreus; 9.276532026 9.318361779 9.495893479 8.920294498 8.7742572 8.587797624 8.971767738 8.831310154 8.796352435 8.896796071 9.139640517 9.043098833 92117399 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 8.330420916 8.409382383 8.622712308 8.633922948 8.315927681 8.028847274 8.807836277 8.766300374 8.63483274 8.610359342 8.169801746 115516566 bclA Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.25571021 9.186407555 9.011854127 9.324297345 9.319564655 8.946668934 9.460773358 9.326809559 9.121503019 9.289265352 9.224134334 9.216222188 28971849 xylL Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas sp. P2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.635842839 8.728209727 8.591436481 8.204357164 8.752657731 8.718208316 8.432491092 8.981810175 8.319353255 8.794430452 8.888457566 8.642776095 69153422 gyrB other category gyrB Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.681660309 8.603249782 8.444532151 8.026293193 8.463610179 8.61479429 9.143152802 7.981389436 9.129711751 8.278414916 8.26173251 8.352411693 15141383 PobA Organic Remediation Aromatics Aromatic carboxylic acid Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 9.430254891 9.208730482 9.438441098 8.89881341 8.939208472 8.992749409 9.089784262 9.017751875 8.940811405 9.048581803 9.228819148 9.215000844 239911664 ABC_antibiotic_transporter Antibiotic resistance transporter Thermococcus gammatolerans EJ3 8.842143286 8.66537008 8.696341757 7.909273001 8.228962536 8.235224037 7.444213805 8.290400333 7.730387442 8.00030458 7.970004846 167039832 nplT Carbon cycling Carbon degradation Starch Thermoanaerobacter sp. X514 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Thermoanaerobacter; 8.794346262 8.656657177 8.746607242 8.196745563 7.986255338 7.935271551 7.744873588 7.755438349 8.024229462 7.552439986 7.565148728 8.257418205 159898137 srt virulence surface protein Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 8.146816319 8.212845817 8.35695707 7.423946332 7.628958242 7.479607566 7.590833499 7.299617532 7.951651752 7.499039186 7.507760972 7.727791186 28869924 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 9.085137833 8.100886141 8.580926766 9.116877691 8.802336413 8.608774958 8.875849873 8.700998999 8.361089181 8.460123652 8.515765951 68510362 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.2990592 9.311668142 9.333772885 8.662509926 8.648829317 8.704554553 8.517495726 8.553451937 8.488747768 8.507578526 8.843509322 149905944 cellobiase Carbon cycling Carbon degradation Cellulose Clostridium beijerinckii NCIMB 8052 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium beijerinckii; 8.639126122 8.563745239 8.535659931 7.951420873 8.088058363 7.82203959 7.743829087 7.631853758 8.132422696 7.572687207 7.434004697 7.903236929 189424108 nrfA Nitrogen Dissimilatory N reduction Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 8.317923616 8.625270071 7.545307539 7.519510431 7.710013183 7.569405808 7.555063676 7.70070004 7.529637012 7.820654687 110827668 ChrA Metal Resistance Chromium Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 9.845981093 10.01406413 9.917155122 9.565291571 9.380979727 9.717870433 9.790144419 9.546390577 9.901246207 9.771374252 9.885262919 10.07479747 118171154 bphF1 Organic Remediation Aromatics Polycyclic aromatics Mycobacterium smegmatis str. MC2 155 8.122919895 8.540797345 8.176585614 8.085363424 7.818097272 7.888970833 8.638298442 8.346697492 8.520423391 8.379582619 8.581741902 213924327 iro virulence Pseudomonas syringae pv. tomato T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 10.54083564 10.36161286 10.48778025 10.20533892 10.19152131 10.07411222 10.29761606 10.42978441 9.85932894 10.33402051 10.3300147 10.16204869 89068265 ppx Phosphorus Phosphorus utilization Oceanicola granulosus HTCC2516 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 8.906084618 8.989651523 8.732073937 8.847505958 8.796992316 8.523540946 8.727654086 8.562236637 8.624320912 8.693177592 8.566718913 8.44213238 149910862 AceB Carbon cycling Carbon degradation others Moritella sp. PE36 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Moritellaceae;genus:Moritella; 7.219475616 7.067043719 7.086979282 148498950 phtA Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.091904208 8.380127331 8.109229296 8.089321043 8.309400278 8.084044638 7.988971516 8.348467776 8.16618385 8.250795068 7.732953076 8.104249238 109455731 vanA Carbon cycling Carbon degradation Others Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 9.100116918 9.058010458 8.985219226 8.726870149 8.612056634 8.840661525 9.0845811 9.010720967 8.993204894 8.57777299 8.865703036 8.615549445 34105604 glnA Stress Nitrogen limitation Chromobacterium violaceum ATCC 12472 10.32505172 10.09220991 10.30440502 9.546601759 9.518392779 9.491920763 9.725145333 9.488333279 10.08802477 9.436552696 9.737371179 9.701005081 283843001 arsM Metal Resistance Arsenic Rhodopseudomonas palustris DX-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.056626523 8.184254952 8.055067123 7.493312508 8.0884166 7.833497596 7.717122733 8.331324793 8.301846352 8.561018591 8.353003156 116743267 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.638168167 8.527522741 8.750632473 8.220476908 8.070094584 8.28181643 8.155978133 7.85817514 8.460192464 7.961062204 7.952343723 8.097612651 94471315 narG Nitrogen Denitrification uncultured bacterium 8.821670929 8.609019315 8.621040653 8.558989651 8.785384639 8.6009395 8.604435072 8.96232977 8.799280486 8.546586107 8.579261164 8.837517419 260911206 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Prevotella sp. oral taxon 472 str. F0295 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella sp. oral taxon 472; 8.743142207 9.007975646 8.436694935 8.837816574 8.935639829 8.62716305 9.247648069 8.963786853 8.575998465 8.710392292 8.863555455 8.462336378 220906953 fnr Stress Oxygen stress Cyanothece sp. PCC 7425 9.111150229 8.887621132 9.09350553 8.054916315 8.070700353 8.143227063 8.414796666 7.989254661 8.57586559 8.386860081 8.283267574 8.44072676 167645857 pimF Organic Remediation Aromatics Aromatic carboxylic acid Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 9.226995635 9.118522701 8.637734982 9.400603171 9.263681676 8.870868508 9.457074331 9.334654172 9.334574193 9.23764564 9.46669855 8.862734744 145569839 pcaG Organic Remediation Aromatics Other aromatics Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 8.588229439 8.663597371 8.434206251 8.472674635 8.449627766 8.373278507 8.663600965 8.897238437 8.687949638 8.822698007 8.64451395 8.872115811 118618701 limEH Carbon cycling Carbon degradation Others Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 9.624646637 9.714184411 9.567499799 9.187414034 9.08679822 9.391748527 9.527627425 9.192850594 9.657363215 9.591374424 9.700137155 9.811126879 254784984 ahpF Stress Oxygen stress Teredinibacter turnerae T7901 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 8.324713555 8.24856628 8.412238037 8.26266984 8.121556707 8.521208359 8.487361966 8.077297119 8.34427247 8.223566876 7.957241313 26988702 MFS_antibiotic Antibiotic resistance transporter Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 9.362751046 9.17122044 9.10816289 8.537105747 8.811751718 9.114112005 9.458235798 7.883881968 9.283270882 8.322407494 8.468910002 111017380 oxdB Organic Remediation Aromatics Nitoaromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.730330757 8.92662013 8.81529783 8.754043655 8.796879625 9.104916558 9.233193447 9.105073928 9.301896927 9.218907698 9.169921078 9.248677164 86360776 rubisco Carbon cycling Carbon fixation Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.538181033 8.40027245 8.825919566 8.411914358 8.351941792 8.171711098 8.200323651 8.372206333 8.421031083 8.667364206 8.745710423 8.661654797 146262378 cumA Organic Remediation Aromatics Other aromatics Rhodococcus sp. L4 8.43276069 8.689198128 9.162321234 9.290792112 8.791471002 8.792833923 9.605291813 8.618805485 9.487490407 9.324458161 9.372291992 13093263 nifH Nitrogen Nitrogen fixation Mycobacterium leprae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.000254971 7.890641201 83846326 ppx Phosphorus Phosphorus utilization Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 8.67315785 8.908401059 8.782953504 8.494299756 9.168670012 9.301322948 9.154810728 9.11699849 9.264073111 9.20383507 9.031839182 34017136 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 8.67315785 8.404917164 8.485797859 8.410666015 8.582328234 8.332568931 8.498702737 8.393873181 8.650613977 8.545677892 8.436088253 8.056304874 206580643 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Klebsiella pneumoniae 342 8.663464402 8.626916161 8.617509937 7.670143647 7.797609977 7.914231922 8.361135187 7.799140101 8.717561276 7.738331964 7.830947191 7.702723861 94983853 gyrB other category gyrB Spiroplasma turonicum superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Entomoplasmatales;family:Spiroplasmataceae;genus:Spiroplasma; 8.98183752 8.718804313 8.919396696 7.903371436 7.832856696 8.01699714 7.922400065 7.7374282 8.071334191 8.082549281 7.901813892 8.202827471 30248392 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Nitrosomonas europaea ATCC 19718 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas europaea; 9.038758501 9.045018338 8.97496901 8.439963678 8.426154172 8.483819428 8.349271991 8.370307443 8.376041561 8.208811347 8.221448442 8.609477759 184207733 exaA Organic Remediation Chlorinated solvents bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 8.98954722 8.918674275 9.081289816 8.28954761 8.033432392 8.144329921 7.932666553 7.977831616 8.164438738 8.026940524 8.310228509 8.236565648 118702001 mauAB Organic Remediation Herbicides related compound Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.134111787 8.626692117 8.273910762 8.098736043 8.377297595 8.165781524 8.553650306 8.7636454 8.610655713 8.755796359 8.545943113 8.565484875 227197854 amyA Carbon cycling Carbon degradation Starch Corynebacterium striatum ATCC 6940 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium striatum; 8.533391479 8.326919018 8.184832595 7.650065605 7.473382855 7.835169819 7.72238349 8.152143474 7.573030314 7.449283038 7.493423155 95112023 nitro Organic Remediation Others Pseudomonas superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae; 8.541345954 8.626867704 8.546869927 8.324227633 8.2298467 8.119324354 7.97172565 7.802848791 8.398273594 7.87161608 7.670639613 8.059367999 62085692 gyrB other category gyrB Gordonia terrae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 8.47992976 8.547287397 8.531130748 7.84731815 7.733494062 8.081508647 8.448480118 7.624721908 8.401450667 8.010239562 7.776010051 7.739783778 219869375 SMR_antibiotics Antibiotic resistance transporter Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 9.135563325 9.078369773 8.959696103 9.106939812 8.792895486 8.418984441 8.598145243 8.95437472 9.147807565 8.869559428 8.735626977 8.654965537 148831448 aclB Carbon cycling Carbon fixation Erythrobacter sp. SD-21 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 8.31159166 8.085847447 7.620190292 8.206283041 8.069766457 8.100708629 8.254893017 8.167466659 8.223382081 8.212458831 8.14591382 159044542 xylA Carbon cycling Carbon degradation Hemicellulose Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 9.451828743 9.371070261 8.84318699 9.084112493 9.309840942 9.48283597 10.00589176 9.561469166 9.114168145 9.295089279 9.317888975 145294198 cadBD Metal Resistance Cadmium Corynebacterium glutamicum R superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 9.398394801 9.420096073 9.687416999 9.077828269 8.867563382 8.953819552 9.055959633 8.951584095 8.791472585 9.307302683 9.477246154 9.317477902 62422741 cadBD Metal Resistance Cadmium Brevibacterium linens BL2 8.044134765 8.167334488 8.103731161 8.030043407 8.301927767 8.130464606 8.105975968 8.319355105 8.3265613 8.348038549 8.095069532 8.367407331 83724933 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Ralstonia solanacearum UW551 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 8.821868894 8.535296374 8.423509912 8.658276716 8.387588782 8.03693109 8.418252232 8.367627551 8.570502521 8.359935806 8.412776415 8.298441227 47571436 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Rubrivivax gelatinosus PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 9.015592981 9.028931118 8.777658839 8.925871399 9.047551375 9.033655716 8.74076576 9.251099532 8.59436305 9.226004378 9.153933497 9.228148422 144906114 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.155310588 7.769207863 7.375238577 7.156967995 6.800978602 7.367694469 7.342934532 170655523 narH Stress Oxygen limitation Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 7.943812281 8.328803669 8.04359341 8.163060592 7.957512878 7.919751244 8.320265233 8.064259115 8.321842758 8.259972695 7.952606814 217501870 ChrA Metal Resistance Chromium Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 9.027162207 9.290993185 9.597225587 8.717589641 9.146988122 8.7574702 8.741740181 9.021817958 9.293731019 9.094133312 8.938528607 219680137 pimF Organic Remediation Aromatics Aromatic carboxylic acid gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.184099391 8.105169743 7.994221612 8.302567587 8.306979127 7.365109876 8.369512828 8.070673508 7.967305049 8.320480198 169886169 pstB Stress Phosphate limitation Synechococcus sp. PCC 7002 8.14669051 8.352208283 8.291525535 7.571282683 7.410044847 7.546321 7.551738964 7.308773654 7.369576685 7.275319252 7.696281519 70930926 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.891453757 8.654821851 8.385865168 9.189455046 8.822941148 8.347841895 9.070801676 8.695980898 8.886199719 8.812466925 8.895220004 8.637222085 157372795 tfdA Organic Remediation Aromatics Chlorinated aromatics Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 8.199860271 8.116530786 8.237594785 8.202083548 8.273023323 7.567484086 8.325757546 8.03632516 7.892237889 8.160716673 8.028790388 126179880 nifH Nitrogen Nitrogen fixation Methanoculleus marisnigri JR1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanoculleus;species:Methanoculleus marisnigri; 8.278203754 8.081959015 7.493984953 8.127553881 7.808346862 8.378122376 8.049108892 8.395754135 8.341677559 8.479296784 182634092 nmoA Organic Remediation Aromatics Nitoaromatics Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 8.141116939 8.188215387 8.291256725 8.239884758 8.28042796 8.148252138 8.380417468 8.388031318 8.226770841 8.424873754 8.248516008 8.138302568 223894499 xylA Carbon cycling Carbon degradation Hemicellulose bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 8.464510875 8.456172039 8.748651339 7.706691277 7.459293083 7.576388483 7.581130849 7.216274304 7.625340849 7.409819098 7.786480515 158392731 exaA Organic Remediation Chlorinated solvents Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.90155762 8.465557513 9.201613409 8.924209492 8.790637167 9.683175001 9.204371356 9.102891959 9.305385792 9.305881897 260770155 iro virulence Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 7.277082482 7.111508748 7.035831908 7.134959597 7.38087695 163758498 vdh Carbon cycling Carbon degradation Others Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 8.801061996 8.233749278 8.46660648 8.255699113 8.465544575 8.219356955 8.140204214 8.524455194 8.468293948 8.38584429 8.066082582 8.359978859 256687767 hly virulence hemolysin Kytococcus sedentarius DSM 20547 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermacoccaceae;genus:Kytococcus;species:Kytococcus sedentarius; 8.029403868 8.202588907 8.08595895 8.363391565 8.003114829 8.190739167 8.618020225 8.523302959 8.605156148 8.368159232 8.524273864 52784430 groEL Stress Heat shock Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 8.807508527 8.13494934 8.307645956 8.583922113 8.58386899 8.684233892 8.31063791 8.8041458 8.327164542 8.796869681 9.051436425 8.256744902 84515312 proV Stress Osmotic stress Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 8.755947048 9.137792386 8.96583014 8.283209542 8.527468516 8.713591426 9.216189872 8.344104943 9.403164851 8.484694363 8.268572627 8.660607508 148252165 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.657807373 8.666796443 8.545234933 8.349707264 8.90997823 8.773211235 8.75550568 8.865621235 8.785439996 8.749157337 8.506778464 255057591 pstC Stress Phosphate limitation Geobacter sp. M18 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.733280317 8.57016745 8.855002092 8.128673413 7.787193204 7.842714385 7.966758339 7.970593337 7.8610103 8.164234686 16125059 silC Metal Resistance Silver Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 9.194833345 9.135603217 9.152546085 9.3457728 9.329885515 8.950932339 9.381216357 9.732461611 9.407933927 9.502408497 9.379010783 9.502828795 222081953 oxyR Stress Oxygen stress Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.013837517 8.094216371 7.639205457 7.794251785 7.634182034 7.521946561 7.213406659 7.691423429 73762919 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.712773044 8.855736488 8.925853442 8.093886888 8.125584268 8.42834957 8.079410521 7.75695457 8.152677941 8.268780904 8.388434123 55773483 aoxB Metal Resistance Arsenic Thermus thermophilus HB8 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 7.718170467 7.879012056 7.859890707 8.074827764 6.69639973 8.074321553 7.035490357 7.215829813 7.917002694 83845259 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 8.200467397 8.076399315 8.250146566 7.80457565 8.13513345 7.988094903 8.151668814 8.496284457 8.394824153 8.59965712 8.656474004 8.427749089 169761742 CopA Metal Resistance Copper Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.900422633 8.823368886 8.855578618 8.247866077 8.229216048 8.420495203 9.015534885 8.587314482 9.020791844 8.320587597 8.48320726 8.261732916 110823833 Catechol Organic Remediation Aromatics Other aromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.795135861 9.05031316 8.790978226 8.698219243 8.375934913 8.83520418 9.184927748 8.684990247 8.807821401 8.380771741 8.567373091 8.52108729 170934034 dsrA Sulphur sulfite reductase Thermoproteus neutrophilus V24Sta 8.956879654 8.943660801 8.872104606 8.497768542 8.553228128 8.548656816 8.616618224 8.703934719 8.854849578 8.706741301 8.69041938 8.464109161 167034529 ahpF Stress Oxygen stress Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.78690406 8.435198323 8.259660506 7.643937899 8.24079718 8.34793277 7.925208902 7.722401611 8.035860439 68165242 gyrB other category gyrB Vibrio cholerae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.216326443 8.36816098 8.280684666 8.465500239 8.269309455 7.951804605 8.274506579 8.06624408 8.41342006 7.971376859 7.983674332 7.787076161 70731834 glnA Stress Nitrogen limitation Pseudomonas fluorescens Pf-5 8.923306925 8.808191142 8.677567166 8.678713568 8.705488385 8.498279158 8.621200454 8.96201679 8.789238742 8.869189134 8.788658049 8.873081101 25027849 narI Stress Oxygen limitation Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 9.128420459 9.080828095 9.055185856 8.543711555 8.985918817 9.143116692 9.560815159 8.923752031 9.320814134 8.73631828 9.058022802 9.019486985 156532308 tfdA Organic Remediation Aromatics Chlorinated aromatics Enterobacter sakazakii ATCC BAA-894 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 9.261837058 9.426632012 9.116733007 9.241079425 9.55222535 9.705948826 9.793786601 10.01497977 9.458517666 9.990213081 9.969579436 10.01726058 227219643 pstB Stress Phosphate limitation Atopobium vaginae DSM 15829 9.379372468 9.508979552 9.292963 9.076121677 9.470543802 9.744709979 3334811 vanA Carbon cycling Carbon degradation Others Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.703064575 8.374588511 8.904219892 8.662582723 8.529748024 8.371836344 8.9599234 8.619869193 8.702448813 8.532777479 8.494021049 67855460 CopA Metal Resistance Copper Crocosphaera watsonii WH 8501 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Crocosphaera;species:Crocosphaera watsonii; 8.459713906 8.105781667 8.465095453 8.017753225 8.18081523 8.528425448 7.926754683 8.150742047 8.156217623 8.281746535 8.747695176 8.223113152 154155244 tfdA Organic Remediation Aromatics Chlorinated aromatics Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 8.278604718 8.382998135 8.383454029 8.187878427 8.111774151 8.098983763 8.147076775 8.443599436 8.204417254 8.742731498 8.736342179 8.306007286 197093940 dmsA Organic Remediation Others Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 8.164070561 8.047979323 7.606094838 7.570327868 7.498832207 7.267922376 7.075172701 8.101722528 7.143222071 6.949255347 212636204 pcc Carbon cycling Carbon fixation Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 8.193998115 8.061132765 8.1005704 7.593120548 7.548134961 8.173888061 8.393506307 7.833473019 8.457664887 8.002531077 7.839147914 8.166637141 112802902 merP Metal Resistance Mercury Campylobacter curvus 525.92 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter curvus; 8.15714567 8.247044843 8.414765539 7.912732109 7.649933746 7.684096582 6.943689687 7.208396976 7.898842145 7.476148272 7.590651329 7.800761548 206679126 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.633955653 7.157052819 6.832752251 7.210598654 112361522 fcbA Organic Remediation Aromatics Chlorinated aromatics consortium cosmid clone pGZ1 superkingdom:Bacteria; 8.606389988 8.391944494 8.715057946 8.712010319 8.789945232 9.113939769 8.661630571 8.436965618 8.384680605 8.572875353 8.279838511 51599250 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 9.859982431 9.954168623 9.593444998 9.5951899 9.514365692 9.529679166 9.930350594 9.431033177 9.880530293 9.873400771 9.977017624 9.916230964 iegcoxL25 CODH Carbon cycling Carbon fixation 7.379665841 7.230757031 7.615142461 7.208320352 7.69232449 7.891957386 7.249839322 7.589733877 41410047 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 8.735700984 8.65298904 8.95687271 8.502282855 8.548829212 8.492597795 8.349201493 8.564324604 8.59047481 8.670437467 8.416890741 8.743879517 188028239 ppk Phosphorus Phosphorus utilization Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 8.354120414 8.251514059 8.213462497 8.377703845 8.197477214 8.03255651 8.228470424 8.427191288 8.443158171 8.403315546 8.007750756 8.184261524 68233203 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 9.132542501 9.288484334 9.344863484 8.403840037 8.485762974 8.615469156 8.594601037 8.427166572 8.491993338 8.449866408 8.530259171 8.848455379 78694823 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.793843439 8.875502874 8.940713968 8.351398803 8.387386066 8.309592292 8.964969513 8.426597881 8.974287035 8.368974775 8.545549509 8.468266698 116612897 CadA Metal Resistance Cadmium Arthrobacter sp. FB24 8.186014425 8.195213552 8.445104493 8.453329014 8.048872245 7.95312363 8.46760063 8.45128996 8.479595738 8.293976328 8.501941219 114705168 MFS_antibiotic Antibiotic resistance transporter Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 7.965677217 7.868594208 8.041792295 254354918 oxyR Stress Oxygen stress Legionella drancourtii LLAP12 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella;species:Legionella drancourtii; 7.906353603 7.790743681 8.164571313 7.377091288 7.092262165 7.190694578 7.223543088 7.556726875 7.146905855 7.275715939 7.368502649 229762121 pstB Stress Phosphate limitation Streptosporangium roseum DSM 43021 8.515591397 8.415489661 8.220590406 7.816351931 7.984459878 8.358747443 8.305564462 7.963840042 8.533717214 8.099871723 8.199074958 8.400329075 83316658 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.2636392 8.166557656 8.315710643 8.272877481 7.839777802 8.002446653 8.07358452 7.972871568 8.278829446 7.959348631 8.293091315 7.888922952 23491952 nagG Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 8.536006135 8.487971763 8.444115127 7.906617414 8.282756117 8.209194965 8.213142055 8.659260536 8.448545049 8.61800083 8.648553626 8.444051515 146190873 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.375471552 7.848650711 8.674856453 8.946528623 8.374237878 8.667942791 8.570622144 8.549890706 8.36224497 8.46308498 8.340767489 154251518 pimF Organic Remediation Aromatics Aromatic carboxylic acid Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 8.47546156 8.397774453 8.221056408 8.149056917 8.153753934 8.166825206 8.399519869 8.107015818 8.074484827 8.061119923 8.100549408 8.154730179 281316822 gyrB other category gyrB Victivallis vadensis ATCC BAA-548 superkingdom:Bacteria;phylum:Lentisphaerae;family:Victivallaceae;genus:Victivallis;species:Victivallis vadensis; 9.054696856 9.001728645 8.899068914 8.346046714 8.184535919 8.208091098 8.461689082 8.106394291 8.244207259 8.349885265 8.439504474 8.243328351 242207682 endochitinase Carbon cycling Carbon degradation Chitin Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 8.180059222 8.37496077 7.803221103 7.704813615 8.024606642 8.092001153 7.753736354 8.28527032 7.673289966 7.939551188 7.851104992 111222817 bphA Organic Remediation Aromatics Polycyclic aromatics Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 8.4584922 8.481501756 8.613052647 8.194450469 7.952997545 7.710401394 7.741450478 8.277825044 8.199255672 8.194374043 8.355259882 8.337559452 82701138 gyrB other category gyrB Nitrosospira multiformis ATCC 25196 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira;species:Nitrosospira multiformis; 8.68880841 8.608980262 8.920042043 8.861216568 9.085632853 9.010777278 8.641488007 9.165470959 8.694097032 9.384295441 9.459671941 9.266408284 12744250 nosZ Nitrogen Denitrification uncultured temperate forest soil bacterium CZ0140 superkingdom:Bacteria; 8.277922967 8.227061734 8.247449279 7.339226138 7.333739938 158318273 CopA Metal Resistance Copper Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.5597497 8.500121065 8.376926166 7.66378195 8.293233849 8.337651257 8.524453708 7.51830866 8.697903361 7.994839065 8.140126446 8.137644164 214030469 pcc Carbon cycling Carbon fixation Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8.705827493 8.570122563 8.733596614 7.910269394 7.681782653 7.713926815 7.748347354 7.822443677 8.199157275 7.774168532 8.04458201 77456345 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.775340115 8.571480213 8.664866275 8.814659641 8.412930044 7.982447734 8.648720803 8.624795476 8.666353925 8.455671075 8.390586577 8.340133422 206684172 catB Organic Remediation Aromatics BTEX and related aromatics Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 9.032927674 9.092575865 8.835545034 8.656444325 8.726701221 8.681260809 8.928953833 9.015516559 8.696773158 9.030965196 9.148109371 9.015384505 19909763 gyrB other category gyrB Rhodomicrobium vannielii superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium; 8.309028173 8.28215708 8.006483509 7.736439355 7.304435262 7.558719805 7.707105341 7.812237784 7.655215186 7.823465863 119955433 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.539007974 8.839010462 8.445534066 8.468259261 8.625094439 9.039367807 8.951101751 8.773223231 8.889272012 9.078229061 9.158422719 8.884131847 57640912 amyA Carbon cycling Carbon degradation Starch Thermococcus kodakarensis KOD1 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus kodakarensis; 8.201799507 8.126816256 7.780077241 7.921042424 7.66536474 7.352648749 7.440730317 7.724754357 7.143786837 7.641634355 254970956 sox Sulphur Sulphur oxidation Acidithiobacillus caldus ATCC 51756 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 8.140415196 7.983672949 8.233173485 7.419933208 7.492931993 7.598982917 7.614581452 7.346540205 7.881457467 7.354980905 7.585438739 7.662112062 161485963 catB Organic Remediation Aromatics BTEX and related aromatics Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 9.668083873 9.656829857 9.675331258 9.34851331 8.960824422 8.872482475 9.122992694 8.933473345 8.917026738 9.020375433 9.039571749 9.221149286 116608920 ureC Nitrogen Ammonification Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8.920741885 8.827625537 8.845126259 8.636084095 8.647335694 8.801335688 8.812549017 8.760315974 8.613951182 118007278 alkB Organic Remediation Other Hydrocarbons Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 9.49388121 9.48421567 9.378776067 9.32749085 9.412955024 9.18888678 9.280340929 9.155491088 9.043013299 9.209350536 9.36479972 8.812029234 223939772 sigma_24 Stress Sigma factors bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 8.265874993 8.042866614 8.02911022 8.073166246 8.242063306 7.503656124 7.688656865 7.778659773 8.038017698 7.933234688 7.556226692 67549530 ChrA Metal Resistance Chromium Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 9.119459544 9.139541719 9.375330128 8.567856382 8.159086923 8.480449841 8.469063886 8.35469087 8.495157835 8.23586278 8.584340135 169832100 pstA Stress Phosphate limitation Candidatus Desulforudis audaxviator MP104C 8.396198072 8.23014555 8.510117877 7.812841317 7.988042041 7.85228693 7.66867334 7.899675957 71558143 TerD Metal Resistance Tellurium Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 9.765416501 9.656144365 9.859509095 9.502273185 9.357847308 9.174907785 8.890199155 9.292547089 9.27180129 9.372168071 9.189518821 167037321 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Thermoanaerobacter pseudethanolicus ATCC 33223 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Thermoanaerobacter;species:Thermoanaerobacter pseudethanolicus; 8.748318932 8.639855286 8.882238141 8.043907404 7.878029667 7.87245495 7.904456131 7.570830839 7.698600589 7.71779434 8.293921603 3451441 xylF Organic Remediation Aromatics BTEX and related aromatics Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.368322565 8.562034722 8.351471163 7.981600309 8.008632056 8.284333483 8.126665463 7.845933494 8.677014494 7.827926622 8.268224452 8.280415787 157804727 AprA Sulphur adenylylsulfate reductase Pelodictyon clathratiforme 8.738362667 8.257773553 8.853488608 7.763819964 7.884002256 7.4475144 7.060100692 8.316378678 7.349430938 7.326689055 8.123225084 110648656 pstC Stress Phosphate limitation Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 8.293181681 8.066915511 8.14795501 7.670584994 8.000877689 7.950795594 7.964152372 8.040976928 8.338668104 8.004844717 7.945508826 8.087640155 209907301 tutFDG Organic Remediation Aromatics BTEX and related aromatics Enterobacter cancerogenus ATCC 35316 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 8.362416322 8.783956403 8.423387052 8.594784896 8.889472145 8.548494778 8.683561715 8.789136964 153009769 ureC Nitrogen Ammonification Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 9.341166425 9.419189039 9.61453308 9.066744464 9.021731396 8.950704524 8.935352737 8.956861349 8.910295074 8.908928101 8.930987956 9.077196012 156107961 sigma_24 Stress Sigma factors Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 7.562908517 7.45288308 7.457586761 7.075139223 7.389492339 7.537924533 7.649980067 7.323944542 7.47336874 118720134 ArsC Metal Resistance Arsenic Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 8.079281418 8.110156098 7.232404517 7.664503313 7.657226202 7.669900454 7.661835886 7.88901621 7.740323785 7.641078716 7.862782323 91703634 ArsC Metal Resistance Arsenic Mycobacterium sp. MCS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.901202726 8.856973457 8.716644033 8.441880193 8.254043874 8.316714922 8.832355908 8.304369844 8.171627999 8.25125171 8.145945165 239795995 sigma_24 Stress Sigma factors Desulfovibrio magneticus RS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio magneticus; 8.691193085 8.941560524 8.961443454 8.016242086 7.878886094 7.970687703 7.997073854 7.519318411 7.605258841 7.636606349 8.032521229 159141275 fnr Stress Oxygen stress Agrobacterium tumefaciens str. C58 8.444054101 8.634275482 8.22968243 8.540060839 8.693852313 8.697998168 8.794955374 9.269416214 8.880947765 9.271307063 9.207459247 8.863469678 219965709 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.29131304 8.254251088 8.27471008 7.828194706 7.777459166 7.739078969 7.486687376 7.458790508 8.149159533 7.641973402 7.690331965 7.554868291 220911259 amyA Carbon cycling Carbon degradation Starch Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 9.666258817 9.965996023 8.813586768 8.4753007 8.591208932 161729057 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 8.51171678 8.744866957 8.964834129 8.279644721 8.007259841 7.992429676 7.753217599 7.540291949 8.019259593 7.937881989 8.094730073 8.093580247 91783200 nagL Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 9.449537728 9.130720368 9.300301467 9.079995124 9.234090307 9.372011333 9.216665598 9.326327593 9.212053249 9.408609266 9.263035404 40736913 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 8.340524249 8.669660518 8.510092971 8.037417714 8.338503907 8.48413986 8.783220907 8.549699226 9.13617872 8.170583837 8.175685436 8.257850243 167647826 narH Stress Oxygen limitation Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.941131958 9.147811351 8.961353524 8.894870637 9.244982932 9.332776194 9.437548303 9.891382859 9.113621765 9.772687557 9.703938104 9.616271763 4633573 nosZ Nitrogen Denitrification uncultured bacterium ProV superkingdom:Bacteria; 10.81086721 10.97858849 10.66893196 9.889641914 10.65306483 10.5129475 10.87283278 10.0151977 10.88759445 10.10136153 10.52718956 10.13746384 255015524 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Bacteroides sp. 2_1_7 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 9.032599991 9.060493788 8.783535169 8.222202095 7.91997633 8.142194208 8.035473331 7.855955103 8.436560874 7.833191732 7.862360898 8.135370577 109290305 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.549979098 8.9034083 8.696665856 7.865245298 8.583947374 8.830236643 9.033551648 8.917287532 8.827606887 8.758780169 8.562204231 8.701425561 109452440 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.588354433 8.099727706 8.627740076 7.946298175 7.908792505 7.642112746 7.898213614 8.030646554 8.056348583 7.481140398 8.026475448 221322417 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 8.984735641 8.979106898 9.199309952 8.798900596 8.553233961 8.327513954 8.172014803 7.90970015 8.571585157 8.210940135 7.996599922 8.461338662 138896173 obgE Stress Radiation stress Geobacillus thermodenitrificans NG80-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermodenitrificans; 8.299581885 8.560366571 8.173079678 7.40973928 7.582211255 7.760113249 7.575181261 7.104479575 7.996785145 7.407960562 7.407344423 7.697123594 153832241 cydB Stress Oxygen limitation Vibrio harveyi HY01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 8.332199034 8.105190166 7.547140647 7.39295258 7.266706777 7.079225317 7.413711092 7.006295559 7.108571363 7.37029736 256363168 ABC_antibiotic_transporter Antibiotic resistance transporter Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 9.058678807 9.238526163 9.233403564 8.51762174 8.348822026 8.556239709 8.472053818 8.272861963 8.589125372 8.428301789 8.350752032 8.614352647 37726855 dsrA Sulphur sulfite reductase uncultured prokaryote 8.532637671 8.483222811 8.734380321 8.657124526 8.453650203 8.14360232 8.51414978 8.952230784 8.992427205 8.539188398 8.332501248 8.630542183 75907632 sigma_70 Stress Sigma factors Anabaena variabilis ATCC 29413 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena variabilis; 7.585528695 7.776751135 7.462143392 6.865293475 7.059005448 7.594360949 7.441982765 7.422759812 7.478471153 115257780 fnr Stress Oxygen stress Rhizobium leguminosarum bv. viciae 3841 8.297508742 8.279204652 7.291491522 7.326443858 117675831 gyrB other category gyrB Leifsonia poae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Leifsonia; 9.44302727 9.696630094 9.254489797 9.290924841 9.582320841 10.00159479 10.16802047 9.798705504 9.79445392 9.634794684 9.842112356 9.677833266 70995390 cah Organic Remediation Others Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 9.106763757 9.007566098 9.189027146 8.321663289 8.242594005 8.11700083 8.118179349 7.996715498 8.046397987 8.19463068 8.023412659 8.449557989 28377014 pnbA Organic Remediation Aromatics Nitoaromatics Lactobacillus plantarum WCFS1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus plantarum; 8.3162165 8.430994462 8.716123546 8.341154273 8.39966589 8.142527609 8.074826141 8.398410657 7.983688028 148259938 NADH_quinone_oxidoreductase Bioleaching Electron transport Acidiphilium cryptum JF-5 8.017709757 7.971512557 8.104783207 7.85541855 8.413478015 8.114099121 8.581084629 8.708706494 7.840864762 94555361 ahpF Stress Oxygen stress Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 8.197949898 8.12342623 8.375406346 8.642971323 8.318833581 8.157512057 8.013004177 8.320290785 8.483868187 8.082847311 7.970121943 8.171785626 71383816 nasA Nitrogen Assimilatory N reduction uncultured bacterium superkingdom:Bacteria; 8.676671165 8.449607963 8.193948025 8.574746168 8.863675128 8.800485402 8.435662783 8.749926233 8.472441995 8.563783631 8.886653676 8.715530827 150027321 dehH109 Organic Remediation Chlorinated solvents Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 8.482973778 8.277815002 8.640415121 8.133415941 7.979499247 7.882238201 7.948030917 8.034076591 8.164534878 8.16572598 8.067517521 8.285356808 114226466 atzA Organic Remediation Herbicides related compound Alkalilimnicola ehrlichei MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 8.816687614 8.935624454 8.368873433 7.800188426 7.949694129 8.348350307 8.935287946 8.178405977 8.276076496 8.409242702 8.159449847 77383056 glnA Stress Nitrogen limitation Pseudomonas fluorescens Pf0-1 7.193980933 7.487630638 7.533109966 7.459233957 7.165455009 7.867334242 212706782 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Providencia rustigianii DSM 4541 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 8.96079037 9.028805555 9.442115092 8.8944371 8.779616003 8.436063008 8.80271793 8.839351422 8.541422638 8.662675798 8.637903131 8.783986314 157963794 cytochrome Energy process Energy process Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 9.03223682 8.552101228 8.953316228 9.27507147 8.824105779 8.668280219 8.797349441 8.905418887 8.899009358 9.368771979 9.490527526 8.447813766 218151452 CopA Metal Resistance Copper Desulfovibrio salexigens DSM 2638 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio salexigens; 7.874233233 8.76031387 8.92109468 7.707788225 7.61551344 7.785713934 7.555875687 6.937880798 7.79321679 7.836548456 7.978120131 71146819 hly virulence hemolysin Colwellia psychrerythraea 34H superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Colwelliaceae;genus:Colwellia;species:Colwellia psychrerythraea; 7.124464102 7.219731343 6.712651921 7.333713118 6.752077124 6.954227813 7.324773193 237757866 clpC Stress Protein stress Corynebacterium kroppenstedtii DSM 44385 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium kroppenstedtii; 9.234977298 9.731680617 9.166312866 9.036222028 9.262278691 8.906734949 8.389286906 8.669955864 8.924305621 8.672171581 8.819410181 8.899004179 60417304 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.117529874 7.817309472 8.074352922 7.410579545 7.487352344 7.582819134 6.956125336 7.164697135 7.653877451 7.368251939 7.348956263 7.699640622 71558949 nmoA Organic Remediation Aromatics Nitoaromatics Arthrobacter sp. KW superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8.45298445 8.465934532 8.312729427 7.26860402 7.402990358 7.419633329 7.774094879 7.414406081 7.432662758 159045109 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 9.38650631 9.082637657 8.987533527 8.975900971 9.022700971 9.36433231 268608080 mannanase Carbon cycling Carbon degradation Hemicellulose Ruminococcus flavefaciens FD-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus flavefaciens; 8.579432102 8.530970704 8.678108108 7.713864243 7.645009084 7.815055866 8.41618232 8.101373827 8.35003207 8.218748931 8.218236848 7.981497519 88783753 aclB Carbon cycling Carbon fixation Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 8.46081714 8.011980876 8.487354455 7.991615125 8.006143702 7.828916242 7.5928429 7.725237469 7.828809231 7.818811701 7.883348295 78693599 atzA Organic Remediation Herbicides related compound Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.706853484 8.600163905 8.516783531 8.24748021 8.09936682 8.201492632 8.34305506 7.922702748 8.527136461 8.062277308 8.163839307 7.848108191 161786135 gyrB other category gyrB Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 9.355064276 9.464739487 9.093728028 8.778350219 8.81042034 9.007944689 197210167 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.470162599 8.430699817 8.325431156 8.43158916 8.231220668 7.837603803 8.276293813 8.248673296 8.301355794 8.234293448 8.397563282 7.881999021 187926849 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 9.792429959 9.813566698 9.40510643 9.873903154 10.06997566 9.784169359 10.44358614 10.08286316 10.17393277 9.978582506 10.35754882 9.962858861 149360979 silC Metal Resistance Silver Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 9.988327365 10.02150728 10.14360666 9.462979795 9.450113756 9.357498333 9.248091673 9.402408441 9.324716532 9.43401902 9.49168207 9.891168878 iegHydrogenase32 hydrogenase Energy process Energy process 8.817411083 8.770561272 9.01250282 8.349631014 7.694835776 7.402575679 7.548963622 7.642301514 7.799141679 7.826521844 7.971778545 269987613 pilin virulence pilin Legionella longbeachae D-4968 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella;species:Legionella longbeachae; 8.538876657 8.38700813 8.995306476 9.307300627 8.866653235 8.517436144 9.404692251 8.319383577 9.091656788 8.949422131 9.267050186 86283700 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.867193116 7.496419368 7.388253832 7.659964496 7.254664995 7.924289152 7.477773394 7.417039449 7.354380729 57235017 pstB Stress Phosphate limitation Dehalococcoides ethenogenes 195 8.561715073 8.039144509 7.914631674 7.614277799 7.315029356 7.518202444 7.216414785 7.0010111 7.54318062 7.23769667 7.368393153 7.742044331 218666124 ppk Phosphorus Phosphorus utilization Acidithiobacillus ferrooxidans ATCC 23270 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 8.082835175 8.371207066 7.981705802 7.684489222 7.761046694 7.625306891 7.82069016 7.983882391 7.753021541 7.850475796 7.814918087 167841175 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Burkholderia thailandensis MSMB43 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 9.578630388 9.508801589 9.46120357 9.429846416 9.072341136 8.886481899 9.339224148 9.379377433 87119701 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Marinomonas sp. MED121 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 8.355504307 8.514308862 8.657487393 7.792706217 7.684256261 7.952174427 7.132221372 7.298957575 7.875095531 8.023671502 7.812625463 167588015 TerD Metal Resistance Tellurium Burkholderia ubonensis Bu superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ubonensis; 9.10923898 8.798681056 9.105921861 8.183585607 8.33445569 8.389246333 8.460737834 7.826704574 8.632497321 8.125134416 8.015764858 8.190175361 146190611 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 9.502707946 9.571214067 9.571071919 9.195961932 9.51646738 9.707419864 9.376620974 9.355424209 9.845646577 9.374761689 9.702959591 9.344258133 164518503 tutFDG Organic Remediation Aromatics BTEX and related aromatics Desulfobacula toluolica superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacula; 8.476720251 8.647541553 7.742098024 7.857366709 7.806269074 7.804286593 7.863573463 8.477510195 7.898415371 7.900000504 7.95376253 163841270 chnB Organic Remediation Other Hydrocarbons Renibacterium salmoninarum ATCC 33209 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Renibacterium;species:Renibacterium salmoninarum; 8.491661876 8.364712216 7.686893319 7.759794249 8.12483948 8.1127298 7.700853659 2853305 gyrB other category gyrB Vibrio alginolyticus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.441212891 8.560275976 8.785290736 8.02350601 7.642910312 7.81572936 7.853670178 7.595062309 7.889036495 7.571579881 7.990069586 221735168 ppk Phosphorus Phosphorus utilization Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 8.274391221 8.135707783 7.482612536 7.543868787 7.482802187 7.410400043 7.056168236 7.829579958 7.236014803 7.449574328 7.410710947 118463960 linC Organic Remediation Pesticides related compound Mycobacterium avium 104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 7.658404922 6.954588352 7.43799555 7.669095211 7.26321715 7.27831163 7.372718325 7.391094358 89340515 TerC Metal Resistance Tellurium Mycobacterium flavescens PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.543032407 8.374991919 7.460648411 7.599686171 7.881979021 8.228301665 7.567341018 7.34080264 7.367195612 7.567240783 256397205 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 8.405467014 8.611313719 8.230528873 8.814586218 8.669543183 8.368730879 8.158889824 8.694567037 8.372743202 8.427316848 8.420529949 8.057278996 218240354 cda Carbon cycling Carbon degradation Starch Alicyclobacillus acidocaldarius LAA1 8.817966468 8.852803948 9.07946263 8.215016035 7.289732778 8.119058483 7.753469598 7.571911111 8.079264889 7.958179153 8.204903953 239798446 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio magneticus; 8.561964242 8.466936797 9.070038957 8.95289892 8.811112068 8.589398414 8.83407296 9.086427901 8.913417041 8.766349605 8.631690971 8.559219719 149202894 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.316004082 8.197560262 8.077866406 7.81453774 7.841349461 7.894648723 7.860446925 8.180235381 8.175045794 7.827119285 7.848767971 8.093596844 83858691 pnbA Organic Remediation Aromatics Nitoaromatics Oceanicaulis alexandrii HTCC2633 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis;species:Oceanicaulis alexandrii; 8.318424582 8.101449467 8.51251488 8.397240415 8.489549288 8.749583177 8.364107723 8.228910006 7.700894135 7.865452939 7.983350458 148254220 sox Sulphur Sulphur oxidation Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.132036603 8.387562083 8.322799482 8.287969534 8.513675358 8.532694008 8.2880006 8.728349345 8.384830032 8.25052443 8.56864846 8.290887732 78188676 ahpC Stress Oxygen stress Chlorobium chlorochromatii CaD3 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium chlorochromatii; 8.116092299 8.104006115 7.562618585 7.718436035 7.584519357 7.733229661 83815482 arsM Metal Resistance Arsenic Salinibacter ruber DSM 13855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 8.068457274 8.682319387 8.675689188 8.261020707 8.090670351 8.741969323 8.986812719 8.565822791 8.731451019 8.776469126 8.76376169 9.042721594 119775353 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 8.674872222 8.832997986 8.662493535 8.009170318 8.049195736 8.129213776 8.422774312 8.293307211 8.650327819 8.090324571 7.929909291 8.156507707 25028683 glnA Stress Nitrogen limitation Corynebacterium efficiens YS-314 8.147250745 8.238269259 8.290439506 7.979425668 7.983420203 7.988798596 7.957877768 7.707003777 8.473676724 8.03080804 7.990679942 7.535803989 161018164 ppx Phosphorus Phosphorus utilization Bartonella tribocorum CIP 105476 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella tribocorum; 8.598042966 8.152246705 8.681179558 8.202049693 7.964025567 7.969866334 7.605718883 7.684491177 7.957383635 7.90329223 7.720542492 8.01648753 187924191 tfdA Organic Remediation Aromatics Chlorinated aromatics Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 9.234187399 9.131159259 9.158276329 9.122109809 9.136264176 8.970571875 8.910577699 9.293962643 8.583013441 9.148467296 9.140255321 9.236528886 186463830 pstB Stress Phosphate limitation Nostoc punctiforme PCC 73102 8.203086618 7.996077102 8.29514754 7.288106185 7.317190047 7.18604235 7.149591303 6.799083554 7.619323988 7.500634099 7.193447614 7.450356874 110822175 ureC Nitrogen Ammonification Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 9.353524253 9.23866247 9.309373771 8.899502806 8.725859291 8.7218908 8.730992276 8.727743606 8.697555929 8.914778434 8.846433299 8.960602148 183598039 CadA Metal Resistance Cadmium Providencia stuartii ATCC 25827 7.600902206 7.985527324 8.078478952 7.833525206 8.34164426 8.110529864 8.365475489 8.186092256 7.816158603 148834592 pstB Stress Phosphate limitation Vibrio shilonii AK1 7.95136242 8.141874173 6.985139221 7.260702084 7.065267805 154157754 CadA Metal Resistance Cadmium Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 9.088293947 9.022244059 9.06695883 8.601625173 8.523956918 8.350847216 8.47203681 8.50750886 8.873438106 8.539050877 8.555655038 8.57573774 114537112 nifH Nitrogen Nitrogen fixation Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 9.693583104 9.786392475 9.578840298 8.837115186 9.389826093 9.476963333 10.01999135 8.959822862 9.916119561 9.119709107 9.08838417 9.107220013 209401664 narG Nitrogen Denitrification uncultured bacterium 9.079769187 9.130088492 9.22668343 8.789259981 8.644552782 8.75862169 8.783227836 8.9027573 8.776536697 8.799077717 8.947341542 8.950568474 117996273 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 9.616121784 9.713792423 9.902568719 9.141719619 8.879720747 9.18349029 8.92110553 8.842005489 8.770083354 8.947730807 9.213439222 270288710 pmoA Carbon cycling Methane Methane oxidation Methylothermus sp. HTM55 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylothermus; 8.324100836 8.370737827 7.456058879 7.710485147 7.795147372 8.269444984 7.640987333 7.598551804 7.668795996 7.734434827 120598411 iro virulence Shewanella sp. W3-18-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 8.831331084 8.649313311 8.689609014 8.351718333 8.039439899 8.269140812 7.85614993 7.693162127 7.637802362 7.860006598 8.136265356 220910452 ChrA Metal Resistance Chromium Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.748124647 8.855982081 8.867022316 8.294791599 8.027986801 8.253805473 8.091520252 8.08781182 8.241822252 8.414481884 8.5671945 2788 glucoamylase Carbon cycling Carbon degradation Starch Amorphotheca resinae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;family:Myxotrichaceae;genus:Amorphotheca; 9.393555132 9.380632602 9.133099143 8.233241325 8.609987267 8.738813633 9.139865514 8.214066029 8.882122382 8.542948288 8.478791059 8.656276854 124485383 rubisco Carbon cycling Carbon fixation Methanocorpusculum labreanum Z superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanocorpusculaceae;genus:Methanocorpusculum;species:Methanocorpusculum labreanum; 8.072517716 7.836670655 8.34329828 7.906091917 8.064693381 7.943405895 7.951372755 7.827000655 7.930222881 7.94712356 7.785174209 116013370 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.538366572 8.116873662 8.440202563 8.110615002 8.082203283 7.878363144 7.701484169 7.640960192 8.167053613 7.655342577 7.494514514 7.839961864 84501659 FTHFS Carbon cycling Acetogenesis Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 8.663962226 8.477769672 8.719356949 7.687427462 7.661932307 7.956913227 7.682480785 7.815287418 7.852893926 8.084905484 7.635849158 8.044762864 157285569 narG Nitrogen Denitrification uncultured bacterium 8.368560792 8.261353452 8.666724456 8.691594838 9.184323605 8.93347938 8.852953079 9.338936585 9.401813364 8.973314921 6561867 amyA Carbon cycling Carbon degradation Starch Emericella nidulans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella; 8.351850122 8.532159561 7.888581775 8.266180865 8.439558245 8.452731093 8.473114939 8.519000822 8.202932881 8.310959016 8.127400623 118591766 pstB Stress Phosphate limitation Stappia aggregata IAM 12614 9.275112178 9.033674879 9.196633112 8.648692397 8.64745365 8.648137166 8.425183162 8.517125151 8.521881179 8.475577043 8.434897786 8.838414813 119692341 AceA Carbon cycling Carbon degradation others Mycobacterium sp. KMS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 10.01918423 9.709181213 9.766428921 9.339465399 9.300215079 9.165545983 9.303511337 8.916031084 9.840397247 9.377618165 9.418887119 9.361444742 228878182 AceB Carbon cycling Carbon degradation others Nakamurella multipartita DSM 44233 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 9.33124423 9.629290395 9.324796984 8.925227866 9.058298597 9.164496033 9.323602483 8.687988687 9.533524741 8.901656942 9.113262953 8.76644378 187926839 narI Stress Oxygen limitation Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.362256669 8.450525649 8.327826642 8.240494561 8.486023093 8.211143515 8.503291815 8.816277334 8.500001821 8.427415909 8.220415985 8.276940573 118714948 silC Metal Resistance Silver Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 8.677034614 8.664618234 8.439890674 8.126946551 7.917270298 7.968917047 8.09829519 7.75319609 7.91161378 8.059031666 7.937521287 169243418 bphF1 Organic Remediation Aromatics Polycyclic aromatics Mycobacterium abscessus 8.436525099 8.183104332 8.336136282 7.710157168 7.397222524 7.708567815 7.499193858 7.477527995 7.63719872 7.497527527 7.50688537 7.374179343 108767040 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 8.120187432 8.290905388 8.196496844 8.245950713 8.102956693 8.186926742 8.400120223 8.249295836 8.555493261 8.352834095 8.370909726 67538514 ChrA Metal Resistance Chromium Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 9.499638382 9.502888689 8.92708066 9.704138933 9.605793041 9.557997243 9.742471709 9.3354668 9.571097808 9.096170388 8.951419122 8.920979258 4154576 ureC Nitrogen Ammonification Helicobacter pylori J99 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter pylori; 8.089420641 7.793478232 7.337038814 7.099383666 83654967 xylA Carbon cycling Carbon degradation Hemicellulose Burkholderia thailandensis E264 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 10.2924673 10.21890823 9.866831019 9.670958235 9.785946022 9.630090998 9.718797356 9.547085061 10.07991907 9.832823364 10.10539683 9.919204606 227111749 nrfA Nitrogen Dissimilatory N reduction Pectobacterium carotovorum subsp. brasiliensis PBR1692 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 9.317319388 9.053116157 9.085177341 9.271591404 9.239839913 8.998242944 9.31105932 9.871682331 9.317678758 9.505485571 9.296034405 9.436455355 117648035 groEL Stress Heat shock Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 8.567865887 8.336264202 8.564051199 7.644633243 7.83207765 7.610118777 7.799052188 7.706078234 7.840789472 7.726683643 8.014584914 170122356 dmsA Organic Remediation Others Escherichia albertii TW07627 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 7.394971926 7.151841015 7.205901799 7.555166937 7.112703194 7.301480338 7.355897203 77978516 CadA Metal Resistance Cadmium Yersinia intermedia ATCC 29909 10.20193194 9.442783798 9.666326594 10.22987469 10.16284525 10.45534868 10.35834674 121609742 tomA Organic Remediation Aromatics BTEX and related aromatics Verminephrobacter eiseniae EF01-2 10.04537684 9.649370235 10.2777301 9.93717115 10.00523195 9.921251074 9.722874977 10.02401693 9.650826233 10.10469039 10.04390528 10.4760281 77383191 catB Organic Remediation Aromatics BTEX and related aromatics Pseudomonas fluorescens Pf0-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.323660159 8.095822332 8.487328942 7.814235398 7.66023239 7.739941058 8.021677277 7.550101704 7.765029325 7.516152381 7.589816064 152983498 cytochrome Energy process Energy process Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.236328464 8.333125845 8.366871633 8.120837159 8.050086249 8.124018284 8.392645439 8.114949809 8.2785344 7.740857378 8.064215128 8.296840133 125973339 endoglucanase Carbon cycling Carbon degradation Cellulose Clostridium thermocellum ATCC 27405 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 8.637048193 8.871381615 8.753228801 8.298360161 8.010895062 8.111564118 7.901448392 7.79485289 8.365584976 8.097543325 7.907410491 8.18103561 146188527 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.723734469 8.568210369 8.240312984 7.93480621 7.93298041 7.897308081 8.063320823 8.344321004 8.321530011 229611246 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9.311292227 9.370532175 9.420053243 8.811826936 8.757299068 8.622814287 8.63252531 8.718437915 8.249209768 8.706700557 8.695556145 9.062204057 220933747 sigma_24 Stress Sigma factors Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 8.949861025 8.971508824 8.868881158 8.738421923 8.901466571 9.517079219 9.738570293 9.099095238 9.645765809 9.052035389 8.948322373 8.947355604 197758001 AceB Carbon cycling Carbon degradation others Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 9.483480895 9.468580124 9.422394906 8.84540401 9.496696743 9.382903068 9.832952256 8.822114698 9.8967932 9.012205084 9.12133589 9.263206253 212171466 alkB Organic Remediation Other Hydrocarbons Salinisphaera sp. S19-3-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Salinisphaerales;family:Salinisphaeraceae;genus:Salinisphaera; 8.26271293 8.352582741 8.324531362 8.316525918 8.2744009 8.232302499 8.337674951 8.52602227 8.453258494 8.666869887 8.247811247 8.347657195 227844366 amyA Carbon cycling Carbon degradation Starch Mobiluncus mulieris ATCC 35243 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus mulieris; 8.181981042 7.503388939 7.574872438 7.460420884 206560137 nahA Organic Remediation Aromatics Polycyclic aromatics Burkholderia cenocepacia J2315 9.656514891 9.551590049 9.325039752 9.190282963 9.151454399 8.710941239 9.308442951 8.971556361 9.399641056 9.220971617 9.076780681 9.157026569 23014368 aclB Carbon cycling Carbon fixation Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 8.48707503 8.197574193 8.215706592 8.045055416 8.276562532 8.08246785 8.102592823 8.155441309 8.440823529 8.051618896 8.104159701 7.851832771 148651897 TerD Metal Resistance Tellurium Psychrobacter sp. PRwf-1 8.648600384 8.6593394 8.900278825 8.56951856 8.548219491 8.35348499 8.516296094 8.968270812 8.617847697 8.827215452 8.499724414 8.69202468 68203850 pcc Carbon cycling Carbon fixation Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.415105619 8.593456399 8.454436345 7.914344935 8.234926075 8.142854303 7.731316369 8.077408031 7.888901144 7.984779688 7.94721013 7.935834729 262086588 sigma_24 Stress Sigma factors Gordonia bronchialis DSM 43247 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 8.71199359 8.703561369 8.700786927 8.701541684 8.636498743 8.921389607 8.36780117 8.613850254 167663170 tutFDG Organic Remediation Aromatics BTEX and related aromatics Clostridium scindens ATCC 35704 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium scindens; 9.843500518 9.786859522 9.886378525 9.41640444 9.247612575 9.025392538 9.19447769 9.142832256 9.307535156 9.115316472 9.27456514 9.339678608 78062539 P450 Energy process Energy process Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.775315723 8.532512292 7.777286927 8.026777875 8.094796357 8.011060986 8.208256568 8.107169356 8.432565874 8.245428905 146405702 exaA Organic Remediation Chlorinated solvents Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.093336763 8.201080113 7.898035273 7.954940827 7.386551646 7.100586174 7.786353601 8.10475778 7.739203874 7.707975948 7.766164526 92915617 TerC Metal Resistance Tellurium Mycobacterium sp. KMS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.263822304 8.557911001 8.349375652 8.387424421 8.634719303 8.525959127 8.088987503 8.912642378 8.169288611 8.58777066 8.460212702 8.597074834 256686001 narI Stress Oxygen limitation Jonesia denitrificans DSM 20603 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 9.478744111 9.324766881 9.703500537 8.766103877 8.567883175 8.765353652 8.29520439 7.988182572 8.494373133 8.449023993 8.851920362 260576520 sigma_70 Stress Sigma factors Rhodobacter sp. SW2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 9.619960932 9.128588972 8.806503531 9.548137327 9.248925297 9.22799587 9.639933565 9.470938686 9.05880747 9.418882821 9.322624041 9.07812979 87331920 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 8.560226283 8.415639253 8.637588722 8.074838344 8.215028285 8.456160545 8.437057019 8.351317529 8.471184586 8.58347129 8.191111216 217414904 bco Organic Remediation Aromatics Aromatic carboxylic acid Bifidobacterium angulatum DSM 20098 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium angulatum; 8.557590894 8.351928658 8.003386612 7.845901526 7.854205962 8.332117947 8.119977145 8.202738196 8.164668835 8.277995678 8.04350548 116804622 nasA Nitrogen Assimilatory N reduction uncultured prokaryote 9.795895764 9.682296018 9.686559112 9.057708544 8.985239404 8.866522337 9.077545483 8.999757429 8.927103192 9.060412688 9.151707263 8.888695004 78224388 obgE Stress Radiation stress Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 8.783872895 8.904390493 8.963332988 8.366762784 8.314078579 8.531736153 8.594460616 8.178959455 8.909767199 8.406162026 8.245431195 8.471246043 146410979 Catechol Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. BTAi1 8.504114263 8.492455906 8.27075985 8.242433264 8.340597487 8.342705246 9.518016061 9.689981322 9.928574023 9.717230617 9.511792297 9.656255825 90436739 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 7.990248674 7.98800066 7.459687422 7.236291501 7.414234858 7.320418206 7.288360686 7.746460924 7.036391718 7.179156529 7.491248011 220708117 xylG Organic Remediation Aromatics Aromatic carboxylic acid Geobacillus sp. Y412MC61 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.499319099 8.242431028 8.289062121 8.289204547 8.192466861 7.996079021 8.033341269 8.360536756 8.204598738 8.297694275 7.87903116 228848109 fnr Stress Oxygen stress Bacillus thuringiensis IBL 200 8.794896671 8.75829846 9.560421688 9.442968321 9.446886538 9.405974937 10.19528771 9.852810522 9.904082924 9.90115277 9.794816275 10.02390735 156933903 SMR_antibiotics Antibiotic resistance transporter Enterobacter sakazakii ATCC BAA-894 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 8.201593848 8.107818663 8.188393506 7.512622854 7.601390528 7.720187064 7.760684682 7.51712061 7.956127317 7.699961158 7.807382794 7.557160817 209486129 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.647302655 9.669067614 9.78459633 9.022881548 8.871584791 8.952446643 8.913107016 8.691052763 9.015344976 8.596248007 8.637621058 9.132527843 162312046 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 8.66398949 8.731868763 8.458398704 7.87521612 8.490432012 8.474358284 8.333644251 8.947609358 8.092826476 8.111072574 7.848343895 18034205 APS_AprA Sulphur adenylylsulfate reductase Desulfococcus multivorans superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus; 7.860242718 7.575752581 7.73616019 7.404141796 7.201275591 7.987647755 7.33624114 7.33277771 7.452909234 219719313 cnrC Metal Resistance "Cobalt,Nickel" Stenotrophomonas sp. SKA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 9.001303187 8.967920541 8.93799349 8.780849235 8.738584384 8.837745351 8.897786718 8.776288899 8.918712684 8.683439291 8.890807417 8.682919841 73534215 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.229308937 8.420970015 7.689566859 7.794650848 7.877312184 7.204003063 7.199793491 8.017158223 30138967 czcC Metal Resistance "Cadmium,Cobalt,Zinc" Nitrosomonas europaea ATCC 19718 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas europaea; 8.904349201 8.476785236 8.613859323 8.542377462 8.35979013 8.335684567 8.245794458 8.54441488 8.321141442 8.324964787 8.187246659 160899137 nagI Organic Remediation Aromatics Aromatic carboxylic acid Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 9.301592054 9.45550647 9.105847739 8.726268514 8.958061501 70607910 sulfur_reductase Bioleaching Sulphur Sulfolobus acidocaldarius DSM 639 8.323037196 8.016951644 8.343180488 7.741694884 7.560068355 7.658237688 7.486469692 7.310495643 7.362955546 7.182323718 7.447535217 162954044 pheA Organic Remediation Aromatics Other aromatics Renibacterium salmoninarum ATCC 33209 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Renibacterium;species:Renibacterium salmoninarum; 8.558757981 8.13685866 8.506472359 8.25907338 8.091520662 7.59329884 7.77222895 8.473910567 8.278216888 7.853759592 7.840751132 8.287404388 229747887 B_lactamase_C Antibiotic resistance Beta-lactamases Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 9.111475818 8.734813201 7.971960741 8.931326735 9.099596485 8.686246778 8.58987791 8.523002313 8.541720094 229733915 B_lactamase_C Antibiotic resistance Beta-lactamases Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 8.268834856 8.169929126 7.226925122 7.374293053 7.630947817 7.583738759 7.49956584 8.031237389 7.766761835 7.799887898 7.672220482 133738533 ArsA Metal Resistance Arsenic Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 8.302394795 8.032803673 8.167559829 8.039252956 7.903723342 7.649538276 8.121597456 7.983458089 8.144676355 8.126412045 8.047854289 7.786507214 209485869 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.621484525 8.434596764 8.054385949 8.481522888 8.521699554 8.629374505 9.009972602 8.830160325 8.650491866 8.802483084 8.951597849 9.101696016 157847632 nrfA Nitrogen Dissimilatory N reduction Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 8.031946825 8.04915676 7.204427419 7.392270283 7.105773084 7.491492899 115449643 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 8.631232242 8.530547465 8.996428557 7.663618367 7.246765195 7.848714788 7.967339122 7.496044024 7.825293491 7.64874566 7.740526971 8.277814222 94972235 ArsC Metal Resistance Arsenic Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 8.438713724 8.488013512 8.85775228 8.827464614 8.569676131 8.221622077 8.6718002 8.813037972 8.521702985 8.630020822 8.665925153 8.590190951 209520842 silC Metal Resistance Silver Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 9.501953232 9.486184116 9.492480636 9.285457775 9.352218585 9.064004787 9.199667404 9.687930103 9.441534373 9.719256021 9.567766113 9.696053584 83647778 type_III_secretion virulence secretion Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 8.676920228 8.807175447 8.900571224 8.906420776 8.924747475 8.805371438 8.821585001 9.472357686 8.817934066 9.186430078 8.801284689 8.768004258 163798060 CODH Carbon cycling Carbon fixation alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 8.488416735 8.740996015 8.605710315 8.255441121 8.049151714 8.094221547 7.789660049 7.911815962 8.183072391 8.069070445 8.07666168 8.013251614 254485893 oxyR Stress Oxygen stress Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.825205075 8.502249432 8.717576142 8.105733418 8.104268588 8.28925533 7.853578991 8.068177458 8.047704606 8.201381875 8.101085964 8.404533105 150396013 dmsA Organic Remediation Others Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 8.586635988 8.528879321 8.480078179 8.119348597 8.386333044 8.541636115 8.745767095 8.578059954 8.830789071 8.476139561 8.36973616 8.610093681 218172499 sigma_70 Stress Sigma factors Cyanothece sp. PCC 7424 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.322163498 7.171086921 7.064299457 6.778232182 7.55017522 124261494 CopA Metal Resistance Copper Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 9.705409817 9.958558535 10.16693255 9.374516605 9.382291744 9.251112918 9.870023617 9.469135944 9.857087256 9.308367236 9.364787325 9.39828791 254985428 cytochrome Energy process Energy process Geobacter sp. M18 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 9.723057206 9.585678778 9.585265331 8.867524793 8.940456915 9.136187604 8.887835488 8.476105382 8.994584699 8.850171329 8.709408153 9.010572997 110633818 sigma_70 Stress Sigma factors Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 9.185694256 9.087689764 9.310279287 9.007191308 8.928909384 8.716052136 9.039708991 8.852613011 8.800113302 9.12348753 9.113732431 8.751878428 186460406 TerC Metal Resistance Tellurium bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 7.23372311 7.139199946 7.048772507 6.722112485 7.343805922 7.010279308 7.16791775 259169678 Tet Antibiotic resistance other Lactobacillus antri DSM 16041 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus antri; 8.268075431 8.242030768 8.187327052 8.430790063 8.136851086 8.352289885 7.730693955 8.27138576 7.947646977 8.182366523 8.274334136 8.308566808 126179296 CadA Metal Resistance Cadmium Methanoculleus marisnigri JR1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanoculleus;species:Methanoculleus marisnigri; 8.26154114 8.749890795 8.929055314 7.754709098 7.846324567 7.877749201 7.56357331 7.524563194 7.953329613 7.712246201 7.668777803 8.002373724 16611903 rubisco Carbon cycling Carbon fixation Nitrosospira sp. 40KI superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira; 8.581462865 8.52988719 8.62120426 8.244413468 8.263669275 8.119012428 8.270675233 8.175473952 8.337045573 8.282918865 8.242749777 7.889159818 217394776 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia pseudomallei 576 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 8.222356443 8.12790382 8.228361862 7.911106726 7.605265198 7.760695872 7.802605127 7.944599202 8.303884386 8.127007126 8.043192989 8.151461775 1790867 vanA Carbon cycling Carbon degradation Others Comamonas testosteroni superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 9.133267638 8.900336137 8.983399107 8.273988688 8.846631907 8.733605438 9.030153268 8.166907699 9.067653345 8.425307454 8.389699682 8.577040569 12006348 B_lactamase_A Antibiotic resistance Beta-lactamases Nocardia asteroides superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia; 8.772976944 8.283302256 8.764687903 8.49802404 8.377550659 8.320061546 8.343380681 8.581628511 258635966 phoA Stress Phosphate limitation Pantoea sp. At-9b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 9.077101085 8.630524165 8.975287355 8.497112392 8.28038222 8.48174632 8.59808528 8.302031442 9.023353216 8.40785009 8.603324107 8.385277032 186909421 amoA Nitrogen Nitrification superkingdom:Bacteria; 8.218904507 8.236266882 8.155056936 7.948441923 7.69174454 8.061373924 8.086802359 7.934071662 7.970755626 7.954732754 7.886925519 146281451 cytochrome Energy process Energy process Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 9.007859898 8.850671512 9.156610761 8.496439897 8.507396554 8.387732373 8.521030252 8.988172755 8.486767035 8.772545094 8.771025226 8.92408744 86360049 nmoA Organic Remediation Aromatics Nitoaromatics Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 11.12505464 11.03785542 10.8882066 10.30622645 10.28890622 10.21917999 10.81835723 10.25189324 10.92394379 10.20501825 10.27923194 10.25745145 58425803 pilin virulence pilin Xanthomonas oryzae pv. oryzae KACC10331 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 8.43122169 8.247929652 8.395479898 8.431760469 8.585240138 8.529423804 8.332813179 8.817789752 8.501154129 8.648909641 8.76013273 8.403067573 209530552 AceB Carbon cycling Carbon degradation others Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 8.090945404 7.854131047 7.859903922 7.483123157 7.180280254 7.703699615 7.817314057 7.579881541 8.218800543 7.574389295 7.475360631 7.619736956 157679004 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.275382162 8.437944798 8.553391292 8.507118589 8.437803206 8.440596414 8.27887358 8.581970337 8.593019642 8.836548053 8.415337224 8.465584839 70607144 FeS_assembly_ATPase Bioleaching Electron transport Sulfolobus acidocaldarius DSM 639 7.899487416 7.811332864 7.20158795 6.903567597 6.903515461 6.679318631 6.915657351 163863401 gyrB other category gyrB Bacillus weihenstephanensis KBAB4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus weihenstephanensis; 8.505337422 8.41216304 8.696748575 8.223666332 8.214985517 8.037530661 7.820342459 7.985354949 8.215949697 8.038533159 7.985399095 8.155177873 118655571 CadA Metal Resistance Cadmium Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 8.587964638 8.736936471 8.561473797 7.855862899 8.028332266 8.288616911 8.344075649 7.928288135 8.354575813 8.238368876 8.483379912 8.405845506 37924855 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.409476103 8.675692882 8.767485719 8.194391911 7.902080477 8.073248931 8.514761936 8.214365329 8.677967379 8.073012848 8.203652605 8.092917426 76803782 alkB Organic Remediation Other Hydrocarbons Pseudomonas sp. PT10 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.444813962 7.467127206 260913985 fnr Stress Oxygen stress Pasteurella dagmatis ATCC 43325 8.057752144 8.042256658 7.149619754 6.674097341 7.255371628 84686266 proV Stress Osmotic stress Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.748168533 8.868047578 8.884246129 8.734566249 8.734863771 8.692106476 8.894644516 8.666063319 8.779407748 9.065989102 9.124627642 8.642741044 254517437 ctsR Stress Protein stress Clostridium sp. 7_2_43FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 9.053145801 8.986313835 9.153528871 8.382928986 8.258248503 8.147195346 7.918723246 7.794284498 8.1899107 8.086013649 8.201128335 8.329189846 229473017 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 8.848750643 8.67753637 8.764030735 8.173654626 8.052821594 7.650244124 8.01104358 7.935893465 8.478897368 7.934926031 8.076685879 8.204931905 145234555 pectinase Carbon cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8.072961056 7.975117735 8.29378699 7.919512173 7.814330578 7.761315711 7.759849201 8.049899666 8.237379359 8.189719927 7.809760315 7.924021676 115365673 atzA Organic Remediation Herbicides related compound Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 8.261163798 8.667418764 8.48289089 7.918990935 8.701528066 8.89453058 8.828484502 8.875293288 8.964740615 9.0708577 8.92257617 13092512 bclA Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium leprae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.653889598 8.500169207 8.620014027 7.716140377 7.542408055 7.762614265 7.609781886 7.284161165 7.842797997 7.723041885 8.022874962 167814523 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia pseudomallei 91 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 9.836184241 9.448469192 9.2901431 9.99152403 9.750638002 9.27701157 9.884016807 9.966756892 9.675379563 9.709206396 9.724607444 9.180024157 15158561 oxyR Stress Oxygen stress Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.474646237 8.427312635 8.361817994 8.250135474 8.12980237 8.409526478 8.590479123 8.523995393 8.575635564 8.417493279 8.399139877 49610577 pstS Stress Phosphate limitation Pectobacterium atrosepticum SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 9.523666726 9.320203787 9.170867146 9.099280856 8.717688957 8.592142549 8.889690193 8.741652979 8.942872524 8.889461022 8.720815172 8.826748808 149920026 vanA Carbon cycling Carbon degradation Others Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 9.343931775 8.956080625 8.846510031 8.895585219 8.475164089 8.310214374 8.682544775 8.740964312 8.883474963 8.321909377 8.308373853 8.325945885 114315287 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Granulibacter bethesdensis CGDNIH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 8.83822769 8.72156199 8.713706859 8.008486391 8.063540463 8.146975482 8.034303083 8.2907566 8.142055093 8.342585598 7.996656099 8.527246014 205323494 cda Carbon cycling Carbon degradation Starch Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29 8.345711266 8.492462856 8.733789282 7.504374359 7.873167584 8.040899931 7.289440863 8.17304073 7.53158916 7.529804275 7.830239791 82791407 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 8.545844496 8.405680384 8.426206042 8.132768609 7.795281845 8.411446271 8.128209643 7.94332252 8.400596173 8.422958942 8.505588131 8.524088173 39997094 cytochrome Energy process Energy process Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 8.334002375 8.543266852 8.420470346 7.95779185 7.730045744 8.027003973 8.25661334 7.711051616 8.073175193 7.973685645 7.52218941 7.828125344 254469746 sigma_24 Stress Sigma factors Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 8.709290026 8.490188606 8.836372717 8.080091865 7.792796513 7.897740611 7.628057166 7.206310158 8.145619434 7.703787259 7.626511814 7.963069513 118720167 ArsC Metal Resistance Arsenic Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 9.599875597 9.471758582 9.499430652 9.816863436 9.790405499 9.567437711 9.868242672 9.750980263 9.73043864 9.925984516 9.906712215 9.617380852 254818565 fnr Stress Oxygen stress Mycobacterium intracellulare ATCC 13950 8.377534549 8.673042648 8.418469169 8.322657607 8.261896109 8.844423127 9.165894476 9.147142182 8.747607463 9.19764108 8.929248926 9.234059388 113733168 pcc Carbon cycling Carbon fixation Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.400829987 8.126406868 7.961369054 7.945986946 7.875324322 8.520209465 8.133006055 8.233110136 8.182394842 8.403270988 108766127 AceB Carbon cycling Carbon degradation others Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 8.750084425 8.620605672 9.029470106 8.419721684 8.506406924 8.081317095 8.174992153 8.288647724 8.581664364 8.178254856 7.945378746 8.258916532 227832024 katA Stress Oxygen stress Corynebacterium aurimucosum ATCC 700975 9.783518914 9.61479817 9.88650649 9.117669071 8.967003786 9.052466966 9.495487149 9.108608332 9.295636324 9.096258518 9.069756991 9.340777127 184193857 obgE Stress Radiation stress Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.683881617 8.811126335 8.595129016 8.05532406 8.377169321 8.473598483 8.610473359 8.402880981 8.407535265 8.30905237 8.381597927 8.460720343 8777586 proO Organic Remediation Aromatics Other aromatics Sphingomonas paucimobilis superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 7.599072729 7.819459393 7.747532267 7.522307296 8.148138501 7.722532255 7.933952998 8.16462161 7.859606986 70732857 katA Stress Oxygen stress Pseudomonas fluorescens Pf-5 9.391441092 9.48916918 9.307238356 8.723171292 9.108178473 8.942624914 9.42319411 9.668259873 9.535181928 9.345653621 9.285077613 8.95832561 255707282 nirS Nitrogen Denitrification uncultured bacterium 8.158039371 8.060492891 8.036243109 8.266326542 8.153476403 8.243381575 8.346400854 8.462494999 8.363187691 8.349397547 8.06084819 3089607 cda Carbon cycling Carbon degradation Starch Thermus sp. IM6501 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus; 8.227163901 7.882252128 7.68260991 7.729924531 7.63172078 8.000039668 8.207338871 7.837851902 7.737745023 7.851975841 7.732095957 198255117 sigma_32 Stress Sigma factors Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 7.267100924 7.413519993 7.642003939 7.318596002 8.109415911 7.342578221 7.258048387 7.416174165 62149232 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.178243561 8.056902107 8.109049425 7.820883872 7.879187711 7.86314878 7.624050227 7.766803897 7.910599652 7.770442393 7.77980623 7.796604341 69154804 pcaG Organic Remediation Aromatics Other aromatics Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 9.283990049 9.136534751 9.290120251 9.203755715 8.988590056 8.757973354 9.100912354 9.453954782 9.28405922 9.195020391 9.106246062 9.425249495 114544475 fnr Stress Oxygen stress Roseovarius sp. HTCC2601 9.092866334 9.036524836 8.746771175 8.72729578 8.778108841 8.364099109 8.633895571 8.757294288 8.767192019 8.787844284 8.60986252 8.699614638 84712744 proO Organic Remediation Aromatics Other aromatics Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 9.173890695 8.958108615 8.744355226 9.072557151 8.94521912 8.845458482 8.773324478 9.10303261 8.787744984 9.184006124 9.037977429 9.065455739 24375534 cytochrome Energy process Energy process Shewanella oneidensis MR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella oneidensis; 8.330449498 8.513420784 8.980252634 7.940344838 7.748580096 8.270125629 7.305428931 7.370453817 8.04249174 7.845250551 8.094319172 8.084020757 170742075 xylJ Organic Remediation Aromatics BTEX and related aromatics Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 8.62329684 8.658078405 8.508454898 8.260681977 8.255694507 8.049181679 8.405253073 8.142108273 8.455687868 8.364623728 8.517987502 8.422137003 29466020 norB Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.039256991 8.192337884 8.242966528 7.596704551 7.709596776 7.720966387 7.79695738 7.829195955 8.078966846 8.110105813 7.829677849 219992370 APS_AprA Sulphur adenylylsulfate reductase Halothermothrix orenii H 168 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Halanaerobiales;family:Halanaerobiaceae;genus:Halothermothrix;species:Halothermothrix orenii; 9.036816296 9.208224057 8.605971646 8.49891792 8.440242502 8.353857886 8.100293512 8.785208077 8.409702463 8.254448885 8.548152667 123987382 obgE Stress Radiation stress Microscilla marina ATCC 23134 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Microscilla;species:Microscilla marina; 9.334017936 9.262565881 9.356602452 8.866280988 8.720991932 8.861587146 8.929845452 8.657471241 9.007938834 9.057301814 9.079885006 9.095281898 116624006 exaA Organic Remediation Chlorinated solvents Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 8.472361531 8.651454202 8.589696348 8.145600175 7.72694305 7.999547994 8.149135362 7.953252506 7.908995013 8.039945435 8.047491559 89082259 obgE Stress Radiation stress Oceanospirillum sp. MED92 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Neptuniibacter; 8.651973257 8.655734032 8.509644234 8.316810578 8.115754242 7.898603404 7.889481854 7.598671167 8.152488647 7.763572253 7.689960522 8.057971407 126355143 ArsC Metal Resistance Arsenic Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 9.143014541 9.073977108 9.353404483 9.12189366 8.616329537 8.559454459 8.767487488 8.670999621 8.795229607 8.669891473 8.627504737 8.856794006 197922116 pulA Carbon cycling Carbon degradation Starch Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 9.01025941 8.823329072 9.028772967 8.415181886 8.563514556 8.441156024 8.616732129 7.913458187 8.468189753 8.381085788 8.43963434 8.411065798 83771612 nitA Organic Remediation Aromatics Other aromatics Aspergillus oryzae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 8.830035543 8.843925154 8.729268577 8.25137134 8.163969132 8.200005922 8.028681534 8.167746805 8.20126954 8.169265305 8.289055706 8.452633456 157804864 APS_AprA Sulphur adenylylsulfate reductase sulfur-oxidizing bacterium AII2 8.407847962 8.360674824 8.529795686 7.751742765 7.590650927 7.845389256 8.23030811 7.776201734 8.425115663 7.824374089 7.801113632 7.837997128 91690603 phn Organic Remediation Herbicides related compound Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.746123332 8.648667785 8.523806688 8.478340569 8.330357716 8.170725369 8.288075547 8.344118379 8.258250122 8.335232254 8.122546669 8.395310591 89094978 pimF Organic Remediation Aromatics Aromatic carboxylic acid Oceanospirillum sp. MED92 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Neptuniibacter; 7.453863254 7.414198097 7.201786523 7.054064677 7.388834262 7.51406848 7.425961139 7.16048438 7.256566604 148518215 xlnD Organic Remediation Aromatics Other aromatics Methylobacterium sp. 4-46 8.890353456 8.864637971 9.197268519 8.468779742 8.394886746 8.76763724 8.817708908 8.545770108 9.075158067 90411472 SMR_antibiotics Antibiotic resistance transporter Photobacterium profundum 3TCK superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 8.807177744 8.607456577 8.697313683 8.25693265 8.261478531 8.337416972 8.006171915 8.275271573 8.348193299 8.397557868 8.467421258 7.797134888 17129953 nirA Nitrogen Assimilatory N reduction Nostoc sp. PCC 7120 8.301307803 8.155268944 8.347129065 7.598513918 7.649760301 7.793091392 7.865512532 7.483382093 8.156506248 7.553396265 7.307764967 7.599666354 111617415 nitA Organic Remediation Aromatics Other aromatics Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 9.604810487 9.265962097 9.025379276 9.597525488 9.30762468 9.250713058 9.501811218 9.502761871 9.254098537 9.187250976 9.374907002 8.997910244 139003420 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.738312012 8.672452759 8.694602376 8.178639764 8.161541872 7.963502678 8.442908428 8.159218823 8.296958498 8.278396771 8.446860922 8.449662989 146401797 NADH_ubiquinone_oxidoreductase Bioleaching Electron transport Acidiphilium cryptum JF-5 9.169993512 9.260797585 9.193164711 8.873153256 8.97297825 9.078487842 9.151890062 9.563687219 9.128711236 9.561243133 9.466283442 9.57857019 148501120 vanA Carbon cycling Carbon degradation Others Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.950502802 8.961147269 8.958365021 8.48586595 8.551884528 8.429400787 8.284291396 8.387660357 8.701585148 8.43388823 8.416738204 8.520115214 184197333 sigma_24 Stress Sigma factors Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.436537929 8.498201682 8.621055562 8.524925068 8.463363493 8.579649047 8.702694203 8.756251106 8.74461756 8.667582571 8.70780206 8.668348681 149203693 fnr Stress Oxygen stress Roseovarius sp. TM1035 9.141970984 9.225960175 9.311487859 8.737734483 8.658353707 8.650578219 8.748925857 8.486881389 8.634538103 8.412702831 8.454701509 8.632338721 225875206 endochitinase Carbon cycling Carbon degradation Chitin Listeria monocytogenes Clip80459 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria monocytogenes; 8.244741332 7.972169112 7.630895948 7.350609182 7.626927138 7.207999406 7.01978863 7.648474728 7.068727248 7.565667511 7.463002408 84383348 phoB Stress Phosphate limitation Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 8.870590784 8.930059923 8.538280398 8.629965507 8.568304818 8.677701404 8.702567418 9.242618375 8.724188721 9.132947524 9.168442843 9.206235934 50952851 mnp Carbon cycling Carbon degradation Lignin Trametes versicolor superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 8.286183426 7.940061519 7.990844813 8.034880903 7.91195778 7.917626518 7.869926613 8.077148791 7.616969497 7.602796399 7.633124691 120588647 proV Stress Osmotic stress Acidovorax citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 8.890905125 8.931574509 8.695431047 8.710280165 8.846625366 8.948182641 8.768580924 8.74819483 8.759124468 9.147429471 8.772340254 113871168 ZntA Metal Resistance Zinc Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 9.837209807 9.639794178 9.481520832 9.67972877 9.509753873 9.737700642 9.330856795 9.806332112 9.07952206 9.646201452 9.770901539 9.406321438 115260360 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 9.335185892 9.519631281 9.337876852 8.94548799 8.948513899 9.281958119 9.316407248 8.995665792 9.461986232 9.208166756 9.194586765 9.337998012 39995807 cytochrome Energy process Energy process Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 8.785703554 8.940662846 8.891239578 9.060598308 9.082568813 8.816172643 8.848933827 9.205306737 8.942820268 9.049781434 9.13153282 8.999667297 30269557 nasA Nitrogen Assimilatory N reduction uncultured bacterium superkingdom:Bacteria; 8.873011013 8.632241998 8.664289649 8.246574659 8.314224373 8.779979946 8.655764884 8.54038289 8.42846586 8.221372135 87286838 phoB Stress Phosphate limitation Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 8.491046119 8.596519357 8.690254485 8.323307795 8.03105435 8.28941125 8.583845113 8.202853473 8.386538977 8.502025546 8.443723678 8.696958966 118660505 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia multivorans ATCC 17616 8.392027938 8.317713753 7.606940703 7.723959642 7.907028975 8.242517275 7.72798387 8.037599971 7.645882227 7.380876301 8.196263632 239910980 pstB Stress Phosphate limitation Thermococcus gammatolerans EJ3 8.50875121 8.716576085 8.463477699 8.083065552 7.712253234 8.062525486 8.235271927 7.828772053 8.06484833 7.810876956 8.158639042 7.935839142 116624684 CopA Metal Resistance Copper Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 8.041648019 7.920277325 8.192682117 8.202639024 8.331282166 7.7658783 8.389948187 8.096431016 8.122692717 8.289856311 8.33597061 84704832 mer Metal Resistance Mercury Parvularcula bermudensis HTCC2503 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 8.796259395 8.523884968 8.835127921 8.448246078 8.206299091 8.129280189 8.286111305 8.09438024 8.16548213 8.397907853 227289858 cda Carbon cycling Carbon degradation Starch Clostridium perfringens str. 13 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium perfringens; 8.129445274 7.906846287 39996748 cytochrome Energy process Energy process Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 8.110119697 7.85646236 7.919817342 7.366983659 7.136130575 7.399398475 6.995220495 6.772820195 7.68494088 109454675 cspA Stress Cold shock Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 8.110677057 7.998111613 8.314761673 7.999594598 8.025650171 7.860457041 7.946143216 7.848493996 8.102055717 7.914878694 7.835788601 7.541598936 227237956 narI Stress Oxygen limitation Mobiluncus curtisii ATCC 43063 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus curtisii; 8.800984727 8.589136709 8.989940197 8.388563147 8.133684288 8.114445467 8.18063846 7.860536498 8.147648649 7.950096052 8.079852649 8.345447663 71900916 pilin virulence pilin Xylella fastidiosa Ann-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xylella;species:Xylella fastidiosa; 9.621189396 9.841489563 9.858418029 9.284155723 9.627608181 9.541275344 9.886918262 10.11223305 9.45552202 9.77126479 9.853309378 9.906720303 146339446 fnr Stress Oxygen stress Bradyrhizobium sp. ORS278 9.262863921 9.364944288 9.918659417 10.11467933 10.00160304 9.671526043 9.817028857 10.32178489 9.912324092 9.96746125 9.707126569 41406647 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 9.198207617 9.236333052 9.020872899 9.02059944 8.891247152 8.944528427 8.902464699 9.077068274 9.124183229 9.52624986 9.549431111 9.372268079 218781454 grpE Stress Heat shock Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 9.629474058 9.513500387 9.652646539 9.182543221 9.264381421 9.130340251 9.352725993 9.324373657 9.225679214 9.418071039 9.38554275 9.3974818 154703436 CopA Metal Resistance Copper Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 7.899340964 8.310439486 7.775856216 7.697138721 7.471343577 7.570677119 7.980906784 7.990707765 7.902287909 7.669123421 8.028612972 148498945 nitA Organic Remediation Aromatics Other aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 10.8385858 10.56139292 10.65810205 10.17454785 9.907569842 9.883466175 10.46810012 9.926304996 10.72967437 10.22357334 10.10921237 10.1921178 114316807 katE Stress Oxygen stress Granulibacter bethesdensis CGDNIH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 8.363574057 8.28303758 8.095077152 8.127345204 8.325363724 7.803108609 8.23383323 8.0197141 8.194422499 146156953 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 7.999950423 8.183736357 7.606425551 7.237082417 7.368976964 7.204303887 6.836899885 7.560673576 6.925069883 6.932561093 7.23211828 122090342 cda Carbon cycling Carbon degradation Starch Yersinia enterocolitica subsp. enterocolitica 8081 8.614510273 8.621945195 8.507164202 7.219534993 7.847672558 7.702630692 7.4334081 7.815499036 7.766529009 7.883814147 7.741822787 7.973573072 112821460 proO Organic Remediation Aromatics Other aromatics Sphingomonas sp. KA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.867247107 8.946863775 9.010671304 8.993665006 8.721415956 8.726974383 9.049178513 8.830143807 9.027377487 8.800314882 8.837414944 8.805442739 39937527 sox Sulphur Sulphur oxidation Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.237436169 8.194849907 7.796894721 7.936951028 8.016184396 8.504435802 8.382367481 8.797416668 8.316180594 8.403644427 8.420706526 83846633 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 7.345762979 7.707821148 7.400436474 7.022256516 7.2277057 7.566582514 7.132307498 7.087711574 7.198771254 56476525 silC Metal Resistance Silver Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 8.937980106 9.056128147 8.70011385 8.935806993 8.841775835 8.622759712 8.880245127 8.879914191 8.782075777 8.92284526 8.846429297 8.566862069 167364425 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.460240617 8.822283817 8.695720891 8.267394212 8.202352582 8.114194895 8.604671739 8.15952577 7.980771691 8.27353378 8.093594067 163734781 xylA Carbon cycling Carbon degradation Hemicellulose Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 8.269634097 8.456660276 7.493573432 7.891886005 8.188449723 8.473669952 8.207650067 8.535214545 7.846616645 8.093622633 8.297870332 268590951 fnr Stress Oxygen stress Providencia rettgeri DSM 1131 8.985254921 8.860641737 8.775182598 8.167346974 8.052908529 8.1317555 8.790204972 8.244911393 8.730515715 8.049787667 8.167132244 8.133484613 256028755 hly virulence hemolysin Fusobacterium sp. D11 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteria;order:Fusobacteriales;family:Fusobacteriaceae;genus:Fusobacterium; 7.543466952 7.53961258 7.186575996 7.487565476 15795659 nitA Organic Remediation Aromatics Other aromatics Rhodococcus rhodochrous superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.616440519 8.436403331 8.190163421 8.228096699 8.278585303 8.021380968 7.894590298 7.693102923 133917247 nahA Organic Remediation Aromatics Polycyclic aromatics Planktothrix agardhii NIVA-CYA 126 9.217531928 9.029210541 9.267367029 8.523296977 8.293684693 8.075939312 7.915112022 7.799110329 8.326707044 8.260002465 8.059028148 8.447472062 154643 ABC_transporter_II Bioleaching other category Acidithiobacillus ferrooxidans 8.941286972 9.173007 8.681935476 8.268826324 8.778493082 9.202340957 8.445953554 8.939819287 8.371742822 8.482537087 8.086401811 157369400 Arylest Organic Remediation Aromatics Other aromatics Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 8.004343237 7.865494206 7.542188874 7.428948391 7.816920424 7.895416562 7.837188318 7.572438831 7.641549906 108805171 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 9.460928389 9.20303977 9.22958328 9.16152408 8.872656582 8.634800586 9.173641061 9.042798624 8.940857674 9.015821119 8.939766374 8.851596568 86169120 ureC Nitrogen Ammonification Synechococcus sp. RS9917 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.154176138 8.119572231 8.149886405 8.004397329 7.869598582 7.707840644 7.966244582 8.401592133 8.280685068 8.280349412 8.240665767 8.075539515 29125948 nosZ Nitrogen Denitrification uncultured soil bacterium superkingdom:Bacteria; 8.961874077 9.058097016 8.8858108 8.489569432 8.921935741 8.949661528 9.280261781 8.356661306 9.354605016 8.542474423 8.779671711 8.690051958 196256713 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 9.383512811 9.257264492 9.216071518 8.798898396 8.787677197 8.579133792 8.919957996 9.010673686 8.848734523 8.966327969 8.784209052 9.115786576 110648679 alkB Organic Remediation Other Hydrocarbons Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 9.07543989 9.055584052 9.198400386 7.779889182 8.316953069 8.719429286 8.922248135 8.193494086 8.887516752 8.360476672 8.330888577 8.280193871 84382810 cadBD Metal Resistance Cadmium Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 8.191158024 8.340821544 7.861487431 8.030802523 8.132804798 8.120682276 7.471588957 7.658131298 7.548368764 7.499558589 239904916 hydrogenase Energy process Energy process Desulfovibrio magneticus RS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio magneticus; 8.557780457 8.715080437 8.732306812 8.485910571 8.430603905 8.17001073 8.641540638 8.760678555 8.549207946 8.610980985 8.515048124 8.576513856 206589642 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 9.651400119 9.939421416 9.524301722 8.938182711 9.597020729 9.971725593 9.861761137 9.720590375 9.28741834 9.46059239 9.415823566 27355922 exaA Organic Remediation Chlorinated solvents Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 9.401875621 9.434433218 9.470423694 8.579015278 8.641048366 8.638393622 8.258498515 8.699317076 8.463292347 8.569168293 8.797951411 229861268 sigma_70 Stress Sigma factors Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 8.785516431 8.638138507 8.875388829 8.734181357 8.581204388 8.352467833 8.496630764 8.964180124 8.598749056 8.840800092 8.739090939 8.986020138 6460178 fnr Stress Oxygen stress Deinococcus radiodurans R1 8.388262573 8.57103213 8.56886499 8.622862396 8.38730986 8.593361162 8.47400758 8.558775356 8.663954121 8.551172461 8.49738924 8.417512783 283577634 sigma_24 Stress Sigma factors Rhodopseudomonas palustris DX-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.714777358 8.698879145 8.222198291 9.147260979 9.067625433 9.066311058 8.645043398 9.317483981 8.708959286 8.782522003 8.987645138 9.301992801 90327694 phn Organic Remediation Herbicides related compound Photobacterium profundum 3TCK superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 8.705009886 8.737560004 8.753775915 8.370906478 8.631255691 7.929035868 8.110410353 8.427185997 8.333612394 8.572844635 8.706287325 8.514402036 126737391 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.994972751 7.863653739 7.363880934 7.530353892 7.265002416 7.373615196 7.635865274 7.318466121 170181169 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 8.318511308 8.035201745 7.702994958 7.939070163 7.883391997 7.503979545 7.832663857 7.819211364 7.861090675 7.846903551 7.801588918 15141335 pcc Carbon cycling Carbon fixation Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 8.482630575 8.317037175 8.532480287 8.763095483 8.539168264 8.304910543 8.190864323 8.71337683 8.554841326 8.463083591 8.464685732 8.69526538 56964737 AceA Carbon cycling Carbon degradation others Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 9.040650137 8.989057371 9.088830913 8.443657126 8.606708206 8.369269903 8.071995845 8.38124971 8.35960139 8.44915503 8.397144343 8.585027534 149927838 dehH109 Organic Remediation Chlorinated solvents Limnobacter sp. MED105 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 8.121537017 8.155763678 8.176970775 7.658752924 7.768278917 7.687759101 7.97776864 7.648766199 7.883750791 7.957773915 8.191793132 7.842224617 266619825 nplT Carbon cycling Carbon degradation Starch Clostridium hathewayi DSM 13479 8.711597145 8.352797791 8.122919762 8.108611168 8.108032046 7.639074498 7.920829605 8.259373662 7.861558977 8.079654481 7.627201728 14026881 catB Organic Remediation Aromatics BTEX and related aromatics Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 8.224104415 8.450352263 8.30846958 8.428459143 8.446785996 8.141192172 8.28345207 8.513314349 8.6770581 8.369204129 7.913020733 8.344050845 169241583 katE Stress Oxygen stress Mycobacterium abscessus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.512502444 8.578590455 8.319728823 8.152289367 8.351928311 8.566615404 8.335823151 8.307724005 8.522321014 7.965113928 8.448237529 7.896403644 224824827 pstA Stress Phosphate limitation Lutiella nitroferrum 2002 8.763486588 8.930614184 9.058828091 8.698953538 8.680172928 8.262412815 8.507307383 9.213287103 8.671127001 8.809109111 8.903370312 9.087812613 84509018 pcaG Organic Remediation Aromatics Other aromatics Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 7.62846589 7.805749045 7.547544532 7.682097827 7.574805525 7.808526207 7.609909969 7.427065121 7.762098756 119956897 alkB Organic Remediation Other Hydrocarbons Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.900966069 8.906365728 9.033578726 8.410043865 8.964099507 8.55452661 8.349137386 8.476718874 8.67834218 8.96227767 8.745137934 90903267 aoxB Metal Resistance Arsenic uncultured bacterium superkingdom:Bacteria; 8.560014505 8.348248009 8.440149073 8.343010213 7.774484818 8.459815297 8.694988091 8.849090041 8.66765595 9.019406813 8.660000929 8.743510557 220698133 pheA Organic Remediation Aromatics Other aromatics Aspergillus flavus NRRL3357 8.140277057 8.323019759 8.708624283 9.19946521 9.118133622 9.000612502 8.62850662 9.173216808 8.702511069 9.364961628 10.02436136 9.454040957 28851401 TerD Metal Resistance Tellurium Pseudomonas syringae pv. tomato str. DC3000 8.22583876 8.101510915 8.076611178 7.677216346 7.868323076 7.926760472 7.680752225 7.696361018 8.089386716 7.646277918 7.883394017 7.695787725 139003556 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.356849124 8.044416067 8.179704408 7.845115797 7.609410743 7.627938493 7.856367639 8.213887025 7.648288383 7.543672965 7.702895541 4062861 phtA Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas paucimobilis superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.7703385 8.687068194 8.914024733 8.590910517 8.884209021 8.536243813 8.430743942 8.114541979 8.44644329 8.161494154 8.384740324 8.388344849 197333186 amyA Carbon cycling Carbon degradation Starch Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 9.706600223 9.67460215 9.696828354 9.114301279 9.08043458 9.031508366 8.795912598 8.744433778 8.85616893 8.845976099 9.217255142 89339444 ZntA Metal Resistance Zinc Mycobacterium flavescens PYR-GCK 9.10753846 8.790381325 9.045225464 9.099947386 8.54004223 8.373807294 8.212402491 8.42652192 8.561938425 8.831966573 9.002253067 8.198509806 163258514 phoB Stress Phosphate limitation Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 8.630492296 7.930886503 8.119693852 8.731581876 8.600183721 7.945595051 8.660134536 8.557438126 8.42475874 8.199175892 8.054406869 197087849 Arylest Organic Remediation Aromatics Other aromatics Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 9.969342305 9.996780913 10.1304035 9.338127984 9.335575908 9.392233399 10.14312554 9.628626282 10.15709093 9.41306484 9.551742246 9.334135578 220904058 pstB Stress Phosphate limitation Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 8.807555795 9.150910152 9.085060456 9.012674518 8.798262744 8.590674235 8.220084708 8.280081605 8.114709951 8.207603019 8.633847215 84384768 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 8.053053596 8.249424379 8.103190515 8.097302972 8.162825218 7.731050803 8.001067013 8.055426169 8.226723444 8.335553373 7.501235621 34333272 T4_type_portal_protein Bacteria phage REPLICATION Bacteriophage KVP40 order:Caudovirales;family:Myoviridae;genus:T4-like viruses;species:Vibrio phage nt-1 sensu lato; 7.387716389 7.480777963 7.477609174 7.335221459 6.907034745 7.861119781 7.409757913 7.363129448 114228057 sigma_70 Stress Sigma factors Alkalilimnicola ehrlichii MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 9.244136901 9.520659767 9.188778522 9.66580485 9.659495773 9.610176807 9.312593707 9.670100508 9.385883417 148271358 ChnE Organic Remediation Other Hydrocarbons Clavibacter michiganensis subsp. michiganensis NCPPB 382 9.827884138 9.705533279 9.681388526 9.177889893 9.541475148 9.508446246 10.00763267 8.963031884 9.65450256 9.200406558 9.161550423 9.300946458 16329402 hrcA Stress Heat shock Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 8.590000212 8.329733182 8.484270149 8.158605096 8.014438839 7.972649173 7.920374724 7.810414941 8.198321776 8.012981499 8.209149771 237800781 type_III_secretion virulence secretion Pseudomonas syringae pv. oryzae str. 1_6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 9.684594572 9.475559456 9.383751152 9.425463008 9.231141162 9.371606184 171281444 ahpF Stress Oxygen stress Streptococcus infantarius subsp. infantarius ATCC BAA-102 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus infantarius; 9.786225873 9.660538903 9.676874245 9.265363183 9.103990347 9.047909248 9.415790099 9.085004059 9.341465109 9.250522721 9.519933847 9.369433053 154685192 nagG Organic Remediation Aromatics Aromatic carboxylic acid Bacillus amyloliquefaciens FZB42 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 8.487489953 8.311217808 8.291132641 7.59162926 7.669953743 7.724851262 7.541276172 7.433474003 8.129627854 7.330816189 7.986916699 7.802534639 54026523 narH Stress Oxygen limitation Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 7.862759747 7.935926458 8.130794007 7.477570343 8.266353219 8.259524678 8.38422702 7.756735176 194560427 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Burkholderia cenocepacia PC184 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 9.419631972 9.02324865 8.880644933 8.947022289 9.083218591 8.889224701 8.938995446 9.577923866 8.918762083 9.09330557 8.935374347 9.361466506 114798522 pimF Organic Remediation Aromatics Aromatic carboxylic acid Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 9.189055089 8.668546041 8.026677263 7.950490903 8.065726458 7.65618735 7.774814203 8.105478929 8.471796236 67155823 atzA Organic Remediation Herbicides related compound Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 9.491415466 9.342056039 9.147463858 8.844584844 9.257056562 9.187083515 9.156426589 9.624083189 9.028393084 9.234413958 9.298535437 9.2378341 152070183 mer Metal Resistance Mercury Beggiatoa sp. PS superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Beggiatoa; 8.413889452 8.427475228 8.505078881 8.04823233 7.829884398 7.807829052 7.221802363 7.125328766 7.973462581 7.418024667 7.250431873 7.856806122 89359741 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 7.746646311 7.657844264 7.487161177 7.878342537 7.735808032 7.452789697 7.771635183 7.890217632 7.554542147 221734314 grpE Stress Heat shock Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 8.617985651 8.377947433 8.054796607 7.908687189 8.192234599 8.347914474 8.035221682 8.269337656 7.953198168 8.238459787 7.766205074 219546809 ppx Phosphorus Phosphorus utilization Candidatus Methanosphaerula palustris E1-9c superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;genus:Methanosphaerula;species:Methanosphaerula palustris; 9.884138787 9.919317532 9.931050427 8.898972448 8.963400869 9.112718906 9.255132447 8.878625602 9.014259519 8.937860423 8.911646742 9.28857374 108766362 nhh Organic Remediation Aromatics Nitoaromatics Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 9.72978426 9.721860369 9.775376908 9.055839989 9.160301482 9.196304614 9.438301365 8.927272027 9.467457113 9.220877302 9.45090353 9.464947037 259168844 sigma_70 Stress Sigma factors Lactobacillus antri DSM 16041 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus antri; 8.509141259 8.420503619 8.424623652 7.825283871 7.932102262 7.724220038 7.635678674 7.246654407 7.698677614 7.715603432 7.650451081 7.859962704 247543454 pstB Stress Phosphate limitation Paenibacillus sp. JDR-2 7.631265718 7.993838605 7.891022953 7.43618307 8.022476222 7.815209315 7.943974898 7.829695551 8.196175941 63029733 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9.197100136 8.991557987 9.247793788 8.341800137 8.254002402 8.51952657 7.925032092 8.062144792 8.32330516 8.112758723 8.250941014 8.400606989 269218475 ABC_antibiotic_transporter Antibiotic resistance transporter Actinomyces sp. oral taxon 848 str. F0332 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 848; 9.017758669 9.255128281 8.998964267 8.775480524 9.123373674 9.512194039 9.067859354 9.346800502 8.88191294 9.052131363 9.012516067 256666162 Tet Antibiotic resistance other Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.72575227 8.78168023 8.811801676 8.032599711 8.039031862 7.920747069 7.740239401 7.991267076 8.120127294 8.158486722 8.055330662 192361526 nmoA Organic Remediation Aromatics Nitoaromatics Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 8.169590705 8.026444415 8.175404526 8.107177744 7.92407454 7.945407253 7.930684682 7.948073232 8.000812126 7.762513572 7.708847781 7.799849939 119371704 narG Nitrogen Denitrification Castellaniella defragrans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Castellaniella; 8.161561029 8.017720158 7.845798852 7.700786911 7.681470748 8.02398395 7.610076023 7.757330571 7.789548567 7.607345709 209401900 narG Nitrogen Denitrification uncultured bacterium 8.611389375 8.373846283 8.385498198 8.45644276 8.338966969 8.087859265 7.924911266 8.291181476 8.281553408 8.265037707 8.312773398 8.091402643 110835546 pstS Stress Phosphate limitation Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 8.685551071 8.272780695 8.544593005 7.908197673 7.792819465 7.837336405 7.754736381 7.346123927 7.742916596 7.830292819 7.957948047 58001438 SilA Metal Resistance Silver Gluconobacter oxydans 621H superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter oxydans; 8.951439166 8.782696247 8.773051586 8.192183981 8.269172128 8.171280668 8.13890522 8.375790758 8.361486591 8.618909576 8.555587583 8.617031512 17430780 silC Metal Resistance Silver Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 8.828269875 8.998525756 9.009325724 8.294684104 8.360915632 8.583648435 8.551882876 8.525230234 8.58552279 8.323440609 8.41377142 8.447094023 260578165 glnA Stress Nitrogen limitation Corynebacterium jeikeium ATCC 43734 8.640641626 8.65359052 8.770435829 8.756072988 8.894533333 8.663779411 8.726955825 8.586385866 9.173688285 8.712025206 8.7997291 8.6779459 194347574 iro virulence Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 8.613786513 8.812801873 8.375681991 8.217503371 8.186423082 8.471006813 8.862355159 8.437002011 8.439475159 8.468554625 8.463716668 8.296710508 260905446 B_lactamase_A Antibiotic resistance Beta-lactamases Brevibacterium linens BL2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium linens; 9.046452522 9.481627954 9.422601751 9.511509507 9.725965784 9.474843781 9.581506959 9.781817331 9.455019028 9.901248899 9.676971131 9.463111425 133912646 ureC Nitrogen Ammonification Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 8.215611441 8.043993222 8.08243844 7.554399131 7.736836162 7.860831224 7.916469811 8.096708963 7.983473453 7.9210504 7.950179145 226939884 hly virulence hemolysin Laribacter hongkongensis HLHK9 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Laribacter;species:Laribacter hongkongensis; 9.006253795 8.863627878 8.707451904 8.201863524 7.731490121 8.028366339 8.465178769 8.06910486 8.467527216 7.805769439 7.877274944 7.75857908 86280862 sigma_24 Stress Sigma factors Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 9.134612044 9.110917119 9.118016277 8.539263482 8.515933086 8.735981062 8.680814146 8.402284738 8.828238504 8.874969966 8.719924354 8.852474022 83655380 vanA Carbon cycling Carbon degradation Others Burkholderia thailandensis E264 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 8.327199066 8.488993936 8.336343885 7.884554376 8.225628358 8.320353923 8.420467075 7.156857152 8.62724532 7.723929191 7.831017909 7.685879083 229314051 glnA Stress Nitrogen limitation Lactobacillus rhamnosus LMS2-1 8.388262573 8.173651325 8.501909232 7.591686743 7.690916497 7.464629546 7.187852739 7.093001773 7.82089942 7.515725577 7.154538527 7.761931601 21242937 hly virulence hemolysin Xanthomonas axonopodis pv. citri str. 306 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas axonopodis; 8.991917352 9.214251051 8.970202894 8.144926313 8.148784288 8.482902575 8.398820531 8.894595233 8.366868086 8.255741662 8.221579598 126709241 catechol_B Organic Remediation Aromatics Other aromatics Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 9.161883987 8.73268611 8.788685724 8.740840669 8.995262582 9.039377967 8.258260231 9.062537047 8.509646259 8.832834104 8.487151792 94471277 narG Nitrogen Denitrification uncultured bacterium 8.836685837 8.997218036 8.842853479 8.663265096 8.725558231 8.483203846 8.660338039 8.714690197 8.754327073 8.908921118 8.704687277 8.387280871 270499107 sigma_24 Stress Sigma factors Micromonospora aurantiaca ATCC 27029 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora aurantiaca; 9.373093544 9.503493651 9.427629589 9.088185389 9.146607133 9.264955776 9.958441994 9.152656603 9.863777071 9.035166644 9.105738466 9.122017121 20142114 dsrA Sulphur sulfite reductase uncultured bacterium 8.56900604 8.537463815 8.790620583 8.189450021 7.951093061 7.99456587 8.148132723 7.825461408 8.061238189 7.847054546 7.982037797 7.887254665 189231560 amyA Carbon cycling Carbon degradation Starch Streptomyces glaucescens superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 9.227131521 9.276246591 9.277538399 8.724443608 9.01529965 8.734142001 8.552185382 8.506924928 124110761 bphA Organic Remediation Aromatics Polycyclic aromatics Sphingobium yanoikuyae 8.98209959 9.077860795 9.084712105 8.627208119 8.673937283 8.54542461 8.512467154 8.793787334 8.50693403 8.805002236 8.664576056 8.804782957 239992254 pstB Stress Phosphate limitation Streptomyces roseosporus NRRL 11379 9.650185363 9.068376491 8.816524797 8.689112877 8.50761989 8.762008975 9.143095293 8.759097337 8.870670214 219944665 iro virulence Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 9.944321198 9.826757805 9.680605343 9.16735838 9.09821216 9.007463883 9.045364397 9.066821467 9.130629901 9.180516275 9.212333698 9.496896223 106881492 TerZ Metal Resistance Tellurium Psychromonas ingrahamii 37 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas;species:Psychromonas ingrahamii; 8.612495367 8.542733506 8.793152821 8.320902093 7.97924624 7.906128045 7.856496188 7.486530417 8.091196609 7.948681308 7.483414203 8.076834142 209498679 pstC Stress Phosphate limitation Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 9.555739725 9.474633929 9.191842051 9.60829985 9.476764123 9.447184847 9.59961069 9.864960927 9.278309081 9.674790223 9.794164865 9.405576581 110612681 gyrB other category gyrB uncultured bacterium superkingdom:Bacteria; 9.093461094 9.222772156 9.221131801 8.545455889 8.469450794 8.377875872 8.440635532 8.205589649 8.41912954 8.26279065 7.902480721 8.714720128 91688107 dehH109 Organic Remediation Chlorinated solvents Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.845924254 8.66247614 8.640334877 8.674353251 8.710485982 8.52441538 8.532765825 8.816920837 8.947183965 8.579415618 8.617675544 8.415654452 91203322 groEL Stress Heat shock Candidatus Kuenenia stuttgartiensis superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;genus:Candidatus Kuenenia; 8.491378335 8.09577601 8.238801491 7.57251813 7.3922759 7.503565031 7.63380167 7.571929795 8.160047593 7.481546153 7.509511951 7.780437856 167664045 obgE Stress Radiation stress Clostridium scindens ATCC 35704 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium scindens; 8.698332856 8.552452024 8.08098122 7.982230349 8.043171954 6.907651361 7.542372811 8.276481263 7.807350466 7.646754119 8.037748073 254382271 katE Stress Oxygen stress Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.616485418 8.349167612 8.551001614 7.836166691 8.115348817 8.271941246 8.771139773 8.077826271 8.667129137 8.206323625 8.018595448 8.170096297 209550717 fnr Stress Oxygen stress Rhizobium leguminosarum bv. trifolii WSM2304 10.5466917 10.66970452 10.81922239 10.23786747 10.04088469 9.726556412 10.01382119 10.03577685 10.41723268 10.19972268 10.41470896 10.51013034 257050093 nplT Carbon cycling Carbon degradation Starch Leptotrichia buccalis DSM 1135 8.673191628 8.464297433 8.78247275 7.757609203 7.430183134 7.616106129 7.575602781 7.36922891 7.384972186 7.710955522 7.983914511 238694905 DNA_polymerase_type_I Bacteria phage REPLICATION Enterobacteria phage JSE order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.879073022 7.584635289 7.399458327 7.382654782 7.347777634 7.943235988 7.222966412 7.373828991 7.376784985 161505331 AceA Carbon cycling Carbon degradation others "Salmonella enterica subsp. arizonae serovar 62:z4,z23:--" superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 8.34506439 8.777449564 8.254339823 7.941180893 8.435017237 8.735931766 8.870165755 8.594952868 8.741837028 8.769057691 9.134545208 8.925255756 86572273 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.5890748 8.738643481 8.478235789 8.386470368 8.400611035 8.488722985 8.84920341 7.965138466 8.296634132 8.430109558 8.177152187 192292585 MFS_antibiotic Antibiotic resistance transporter Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.591679895 8.336361335 8.388392494 8.54230137 8.473023841 8.426343978 8.157702871 8.645433623 8.597501672 8.452699251 8.486422901 8.125107989 118468324 CDH Carbon cycling Carbon degradation Cellulose Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 10.01648523 10.02604237 10.07109472 9.564612762 9.635858474 9.740099424 9.440603776 9.58403398 9.912791743 9.749500267 9.891175552 9.923701141 2130622 norB Nitrogen Denitrification Rhodobacter sphaeroides superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 8.652821575 8.678203822 8.679469695 8.186979547 8.36312711 8.448782124 8.572794579 7.974227757 8.136314841 8.127422423 8.499287267 8.337234583 73538380 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 9.425806035 9.703437163 9.850214297 10.04151482 9.885559933 9.391267452 9.71660996 10.2272875 9.807814951 10.03132133 9.705056106 10.27557487 167541078 mcrA Carbon cycling Methane Methane production uncultured bacterium superkingdom:Bacteria; 8.794621488 9.463127202 9.212670016 9.407802493 9.827473245 9.341129835 9.722089712 9.382476015 9.605885967 150026841 fnr Stress Oxygen stress Sinorhizobium medicae WSM419 9.033632174 8.344898334 8.298828314 8.969906134 8.612195576 8.353165558 8.907643573 8.863042984 8.853199746 8.569433175 8.47018664 258406024 Tet Antibiotic resistance other Desulfohalobium retbaense DSM 5692 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium;species:Desulfohalobium retbaense; 7.996288384 8.189444558 8.18822157 8.32444439 7.721211932 7.921576987 8.289904466 8.006500087 8.481414601 8.029780486 8.056488031 8.06668268 118701836 nagI Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.146015522 8.823627523 8.135212346 7.815251022 8.751432286 8.896591704 8.524607365 8.666797662 8.242644151 8.518060876 8.557680494 254819312 oxyR Stress Oxygen stress Mycobacterium intracellulare ATCC 13950 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 8.930513745 8.718599941 8.808052765 8.606293571 8.653400455 8.430520813 8.533331149 8.759463519 8.626169002 8.777068341 8.542182414 8.552306292 82736341 nhh Organic Remediation Aromatics Nitoaromatics Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.784864166 8.300089517 8.232767904 8.43145922 8.288999854 8.253263714 8.146705355 8.2768344 8.595634203 7.924329874 8.287571566 7.952075895 47573392 Xamo Organic Remediation Other Hydrocarbons Rubrivivax gelatinosus PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 9.314207172 9.238053104 9.609902326 8.625849548 8.514583573 8.454394116 8.582546393 8.949028343 8.847597457 9.027088958 9.045641411 149114395 TerC Metal Resistance Tellurium Shewanella baltica OS223 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 8.943696836 8.965010368 9.041247566 8.384661444 8.357739231 7.74124779 8.035490877 7.876379043 7.883929984 8.284023653 7.982808935 8.377012549 183581743 pulA Carbon cycling Carbon degradation Starch Kocuria rhizophila DC2201 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 9.75358329 9.76860496 9.543890845 10.22047031 9.932894957 9.393681298 10.01468899 9.950183311 9.835296627 9.760691894 9.536107511 9.520736073 146409656 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Bradyrhizobium sp. BTAi1 8.14590107 8.263280136 8.374407704 7.618723779 7.545262116 7.750322697 8.28606579 7.641243089 7.73691364 7.843634869 7.717866105 86557162 sigma_70 Stress Sigma factors Synechococcus sp. JA-2-3B'a(2-13) superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.743343734 8.643994507 9.006998179 8.327445289 8.383509335 8.214260187 8.538577954 8.386989703 8.416496961 8.502020258 8.381595863 146400900 heat_shock_protein Bioleaching other category Acidiphilium cryptum JF-5 8.819321508 8.686435173 8.486912377 9.110217078 9.09905881 8.887571766 8.915542637 8.971134218 8.817141003 8.900507682 8.679803145 8.294454189 73538369 tfdA Organic Remediation Aromatics Chlorinated aromatics Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 10.22273209 10.1292738 10.1664158 9.565929363 9.591327713 9.441677197 9.492100568 9.655000063 9.671520265 9.745804253 9.897052312 9.918591431 88918533 ppx Phosphorus Phosphorus utilization Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 8.57629631 8.574215518 8.84665838 8.173855051 8.018332156 7.856327701 7.812165821 7.75014294 8.17812757 7.842615554 7.74247731 8.1920115 149186124 AceB Carbon cycling Carbon degradation others Erythrobacter sp. SD-21 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 9.165003505 9.382977707 9.306285118 8.639889493 8.311606472 8.567458013 8.463377845 8.52083845 8.722070972 219563146 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 9.408448201 9.571103545 8.748773473 8.666406208 8.448364761 8.670624241 8.623605864 8.981233937 8.662573802 8.680742695 8.909796895 121495628 narG Nitrogen Denitrification uncultured bacterium 8.243984156 8.366858281 8.190061063 7.983607549 7.783920595 8.120045717 7.884741864 8.21676145 8.022788421 7.462489899 7.665807739 37575471 bphA Organic Remediation Aromatics Polycyclic aromatics Mycobacterium flavescens 9.133092807 8.711303693 8.742473549 8.504314382 8.577757481 8.31756988 8.100149666 8.208349119 8.427610032 8.237850682 8.098856865 8.481942662 229538994 sigma_24 Stress Sigma factors Planctomyces limnophilus DSM 3776 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces limnophilus; 8.267913389 8.200198313 8.548646173 7.46322754 8.133278022 8.283518131 8.336435747 7.274367675 8.448637101 7.853609209 7.908826227 7.78904516 222438011 glnA Stress Nitrogen limitation Labrenzia alexandrii DFL-11 9.163337389 8.989036306 9.313874596 8.57259409 8.637219766 8.588809438 8.666949678 8.662649568 8.425657835 8.939462883 8.72873489 8.841390191 2196814 gyrB other category gyrB Shewanella putrefaciens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 8.885052424 8.712243659 9.05698819 8.276789794 8.170195834 8.067834546 7.859289862 7.687625382 7.879230648 7.776868889 8.286056455 42548332 tftH Organic Remediation Aromatics Chlorinated aromatics Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 8.997676617 8.952668139 9.1338341 8.812996917 9.06231057 8.866963338 9.080055666 8.950342827 9.208879721 9.368027356 9.38064121 9.31142357 7672267 PobA Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces coelicolor A3(2) 8.962541924 9.068113417 8.916343589 9.411453343 9.212171622 9.178159994 8.963701384 9.481738161 8.878903047 9.301945999 9.449509522 8.953758982 68244382 ppx Phosphorus Phosphorus utilization Pelodictyon phaeoclathratiforme BU-1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 8.35620013 8.497388779 8.7210673 8.542905119 8.486079002 8.078058576 8.689247415 8.426157903 8.631098907 8.436717553 8.190593859 8.365002864 166408398 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 8.257654231 8.483460444 8.293333035 7.627676301 7.563551236 7.70557273 7.627746475 8.173849512 7.526660797 7.571393678 7.767829868 161163802 chnB Organic Remediation Other Hydrocarbons Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 10.91463462 10.81718839 11.02959083 10.38791465 10.47892923 10.1453454 10.39455376 10.55949718 10.69597711 10.45183609 10.56952856 10.54433547 90023392 pstB Stress Phosphate limitation Saccharophagus degradans 2-40 8.826480794 8.536105598 8.776150905 8.087231465 8.07956836 7.900883935 7.879067605 7.494604915 7.977273798 7.876248984 8.075940106 262297933 katE Stress Oxygen stress Acinetobacter radioresistens SH164 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter radioresistens; 6.716624679 6.665875937 6.735264449 118435049 fnr Stress Oxygen stress Stappia aggregata IAM 12614 8.104481053 8.072085279 7.452556821 7.338939027 7.668461522 7.07891227 7.803467612 7.17039717 7.752676755 7.27810014 145577320 pulA Carbon cycling Carbon degradation Starch Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 8.91091086 8.079272021 8.785013073 9.020085674 9.180551343 8.958438171 8.8746934 9.495305448 8.713330877 9.045799086 9.034885904 9.393110436 88936823 Apc Organic Remediation Aromatics BTEX and related aromatics Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 8.322135547 8.464603677 8.916490248 8.842961763 8.847335852 8.584603044 8.657719074 9.100975411 8.795131511 9.036657477 8.694127146 9.04066113 222111334 CopA Metal Resistance Copper Diaphorobacter sp. TPSY 9.20378439 8.933974962 8.740915971 8.464726498 8.748149544 8.60278848 8.733437587 8.568303162 8.840081632 8.848195473 8.701664541 8.884028348 115492505 katE Stress Oxygen stress Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 9.24760396 9.3327825 9.61000467 8.757265814 8.420535596 8.930979855 8.606782757 8.344898907 8.666619941 8.789733071 8.681558651 8.863472128 113529744 B_lactamase_C Antibiotic resistance Beta-lactamases Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.360023244 8.191102918 7.937535088 7.940496159 8.00669837 8.016755959 7.836333388 8.197415371 7.800303862 7.823329125 7.778826324 260221223 vanA Carbon cycling Carbon degradation Others Curvibacter putative symbiont of Hydra magnipapillata superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 9.142283749 9.30679323 9.220711429 9.210568713 9.287506248 9.018069251 9.414583392 9.68844343 9.311615883 9.691301909 9.268683767 9.401117722 31747164 endoglucanase Carbon cycling Carbon degradation Cellulose Hypocrea jecorina superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 9.016925525 8.975366355 9.142655852 9.539336663 9.068729854 8.545981848 9.055447344 9.245173478 9.165111019 9.097525035 8.753311402 8.365191946 221157081 catechol_B Organic Remediation Aromatics Other aromatics Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 9.265915808 9.089136175 9.213060871 8.420392449 8.387041316 8.454076467 8.740849521 8.55312976 8.815274473 8.558289508 8.549635867 8.561643023 167456362 pulA Carbon cycling Carbon degradation Starch Anaeromyxobacter dehalogenans 2CP-1 9.067693388 8.966996661 9.08140009 8.726781422 8.450187913 8.494799036 8.405678215 8.345074301 8.402738905 8.419343011 8.480089793 8.713407717 218750956 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 9.553100784 9.575171899 9.542270276 8.320281664 8.293584801 8.733042866 8.818397128 197695215 gyrB other category gyrB Streptomyces sp. SPB74 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.946728007 8.74339151 8.683676046 8.460565025 8.479136739 8.505823693 8.57839627 8.500748011 8.738065333 8.489982638 8.481308422 8.713786404 78220137 obgE Stress Radiation stress Desulfovibrio desulfuricans subsp. desulfuricans str. G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 8.755524091 8.877125902 8.747033424 8.370231646 8.519936996 8.639357719 8.976725035 8.459055418 8.788717454 8.59337501 8.704187198 8.740480836 86285381 MFS_antibiotic Antibiotic resistance transporter Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 9.371848133 9.274572052 9.198379502 9.206069843 9.254982953 9.211870317 9.014051336 9.487526437 9.416521801 8.93169092 8.870400286 9.091506355 116619828 sigma_24 Stress Sigma factors Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 8.163710859 8.302280839 7.763462912 7.707956569 7.596026272 7.353869237 7.809069424 8.120691283 7.759549364 7.594208437 7.60521902 150385059 CadA Metal Resistance Cadmium Victivallis vadensis ATCC BAA-548 superkingdom:Bacteria;phylum:Lentisphaerae;family:Victivallaceae;genus:Victivallis;species:Victivallis vadensis; 8.424037096 8.555650955 8.382840885 7.90360194 8.005795974 7.900556861 7.486601323 7.652670712 8.330793412 7.849868317 7.962807606 8.095618543 146406865 perR Stress Oxygen stress Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.731516742 8.846631117 8.558129879 8.580034088 8.743962055 8.366866172 8.055378522 8.129978031 8.399765405 8.387858549 8.181153098 8.287932588 197210175 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.493628187 8.621744374 8.562325769 8.35446609 7.790652921 8.242780131 8.108534052 7.825545199 7.811832652 8.196339749 8.144457894 2634826 pcc Carbon cycling Carbon fixation Bacillus subtilis subsp. subtilis str. 168 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 7.812980455 7.842033982 7.728643691 7.997793921 8.066332732 8.151840109 7.827428055 7.629057187 7.794207657 24460039 cpnC Organic Remediation Other Hydrocarbons Comamonas sp. NCIMB 9872 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 8.037013421 8.543892014 8.091217162 7.415945682 7.554891129 7.808881123 8.091365431 7.639047679 7.738767988 7.806717341 7.801009343 83756985 proV Stress Osmotic stress Salinibacter ruber DSM 13855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 8.683687783 8.429800635 8.276904885 8.739585062 8.468127853 8.191679271 8.869362164 8.76798317 8.229893092 8.560176733 8.687103453 8.584316252 257054115 srt virulence surface protein Saccharomonospora viridis DSM 43017 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora viridis; 8.682102313 8.901887198 8.887942565 8.588095182 8.526874121 8.404293295 8.688684606 8.699621793 8.876698544 8.839571179 213692769 cellobiase Carbon cycling Carbon degradation Cellulose Bifidobacterium longum subsp. infantis ATCC 15697 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 8.453102307 8.910762004 8.759463696 8.55141105 8.56852065 8.738666309 8.699753999 9.067656546 8.809456068 9.122120859 8.964170313 189338545 ArsC Metal Resistance Arsenic Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 9.191869976 9.05831335 8.904549597 9.047713983 9.118481125 9.036631262 9.077404186 9.12648588 9.323473653 9.397534503 9.398796198 9.552241063 170124064 CadA Metal Resistance Cadmium Escherichia albertii TW07627 8.858496333 8.915535326 8.752061937 8.999055877 9.195515853 8.950348888 8.829105996 9.356963874 9.271922806 9.15034016 9.313130606 8.822896055 262274973 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;species:Grimontia hollisae; 8.530933582 8.709716548 8.411543365 7.978040147 7.770719738 8.187926744 8.798902785 7.877254581 7.952708013 8.06440763 8.03887363 160897140 sigma_32 Stress Sigma factors Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.469376108 8.579892214 8.560502604 7.940487887 7.972859398 8.785828228 8.292188327 8.81134693 8.086171353 8.176593057 7.999339937 148591747 phenol_oxidase Carbon cycling Carbon degradation Lignin Verpa conica superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Pezizomycetes;order:Pezizales;family:Morchellaceae;genus:Verpa; 8.467817834 8.373120822 8.403747202 7.516574582 7.404861339 7.565646521 7.451541063 7.194472622 8.017641568 7.606681324 7.327804493 7.644031946 169832167 glnA Stress Nitrogen limitation Candidatus Desulforudis audaxviator MP104C 8.367360004 8.297601546 8.588421934 8.203270133 8.085154488 8.024282855 7.769737767 7.549341708 7.832804431 7.869902067 22778109 ArsC Metal Resistance Arsenic Oceanobacillus iheyensis HTE831 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Oceanobacillus;species:Oceanobacillus iheyensis; 8.52466818 8.195213552 8.453012354 7.855377938 7.538955693 7.593857817 7.258650815 7.473413076 7.466178108 7.742902158 7.793538366 209401916 narG Nitrogen Denitrification uncultured bacterium 9.46912192 9.461327036 9.435986999 9.197849683 9.08158657 8.953030316 8.92294414 9.30490361 8.999863196 9.007746824 9.071059791 9.281157999 94984918 pcc Carbon cycling Carbon fixation Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 8.748632172 8.556690679 8.563901601 8.015166292 8.153628258 8.36261852 8.470412353 8.699523348 8.127116244 8.214867386 7.966204929 119475683 tfdA Organic Remediation Aromatics Chlorinated aromatics marine gamma proteobacterium HTCC2143 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.088233667 7.778623505 7.795676239 8.237837784 8.184147587 7.981577077 8.128540744 8.183398935 8.02989594 157285680 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 8.792507395 8.638994293 8.524715926 8.998467346 8.579205263 8.628753384 8.010749917 8.315771411 8.733759721 8.417447882 8.5534202 8.584788419 73749348 Ni_Fe_hydrogenase Energy process Energy process Dehalococcoides sp. CBDB1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 8.382705241 8.513719154 8.698759451 8.09544422 7.851691275 7.899928748 7.674873607 7.609236268 7.63065371 7.53192251 8.036451377 108770845 hrcA Stress Heat shock Mycobacterium sp. MCS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.122357589 8.383501167 8.272323857 8.342112194 8.07803947 8.202305296 8.759188664 8.551589993 8.72244857 8.724432029 8.7202994 170693256 nmoA Organic Remediation Aromatics Nitoaromatics Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 8.210935695 8.137994609 7.56134722 7.49826919 7.715430813 7.694349758 7.453274307 8.246546134 7.639001574 7.631633862 7.402606037 119896978 pcc Carbon cycling Carbon fixation Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 9.570049477 9.460100102 9.559459208 9.445209378 9.492639428 9.067318431 9.634877206 10.23122951 9.45683323 9.836276226 9.571028741 9.773794206 112462315 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.207820663 7.841595664 8.212579135 7.26256148 7.439068477 7.72293115 7.355948124 7.135422289 7.37772679 7.392133336 7.5779962 29830406 pimF Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 8.889556694 9.093838758 8.735315987 9.36875113 9.246794561 8.895921229 9.446375948 9.40422913 8.884184475 9.391793352 9.240698916 9.080093573 192361850 pilin virulence pilin Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 8.419154704 8.203745075 8.263301566 7.752407047 7.568989491 7.71680331 7.024265036 7.97392211 7.234711145 7.041120689 7.698787466 23465129 ara Carbon cycling Carbon degradation Hemicellulose Bifidobacterium longum NCC2705 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 7.856805207 7.921466318 7.873120085 7.805045308 7.994810155 8.368343897 7.984862197 7.897766345 8.192544549 218268557 tutFDG Organic Remediation Aromatics BTEX and related aromatics Clostridium hylemonae DSM 15053 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 8.00004912 7.525458503 7.360586671 7.683516495 7.409578028 7.571147983 7.685870617 7.287772225 119451215 pimF Organic Remediation Aromatics Aromatic carboxylic acid marine gamma proteobacterium HTCC2143 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 9.305838723 9.307234871 9.460606416 8.779011778 8.675071861 8.598585509 8.545087452 8.628089422 8.492967365 8.693956652 8.654221868 8.937910576 282887059 type_III_secretion virulence secretion Burkholderia sp. CCGE1001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.704859381 8.833451182 8.281760486 9.136276625 9.056632371 8.827394123 9.330071961 9.112290493 8.796483098 8.768379502 9.044531279 8.55492866 67900790 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 9.613141667 8.876182609 9.086840131 8.977127237 8.546519691 8.514179636 9.334276776 9.168813251 260865921 clpC Stress Protein stress Ammonifex degensii KC4 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Ammonifex;species:Ammonifex degensii; 9.014493955 8.993112442 8.98249816 8.735010002 8.690794607 8.652298038 8.665055531 8.975886362 8.735858588 8.90976147 8.60889656 8.878491811 240867959 iro virulence Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.35013466 8.551363663 8.632654476 8.168709165 8.104770556 8.47013061 8.769252133 8.425615163 8.499684356 8.180736558 8.540879338 8.678742074 146277744 cytochrome Energy process Energy process Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 9.537924623 9.444897806 9.750665966 9.1819055 9.035731465 8.937963967 8.944760745 9.05798528 9.02978075 9.125440137 9.205999753 9.431807045 255274021 obgE Stress Radiation stress Hyphomicrobium denitrificans ATCC 51888 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 8.938705555 8.702018045 9.044105852 8.375192182 8.450351422 8.52858375 8.539426209 8.151214487 8.455211764 8.691367445 8.937621733 8.780895224 21241130 HBH Organic Remediation Aromatics BTEX and related aromatics Xanthomonas axonopodis pv. citri str. 306 9.323546655 9.360349041 9.158708576 9.04665042 8.903847031 8.800892692 8.904456823 8.995802944 8.951523589 8.928868616 8.732628521 121052597 TehB Metal Resistance Tellurium Neisseria meningitidis Z2491 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria meningitidis; 8.527571427 8.548782045 7.735697562 8.025420338 7.867998546 7.866212316 8.134459848 8.012870848 8.07915113 8.169862433 262195769 grpE Stress Heat shock Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Haliangiaceae;genus:Haliangium;species:Haliangium ochraceum; 8.909621159 8.634581948 8.680303957 8.932001049 8.723400608 8.332142649 8.76650266 8.719197647 8.720584108 8.68893007 8.942940574 8.440091376 218172791 sigma_70 Stress Sigma factors Cyanothece sp. PCC 7424 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.364126319 8.062847671 8.177932497 7.983006232 8.157809324 7.984453429 8.10019353 8.665302462 8.214983811 8.420796479 8.103602919 7.981433165 53687606 ureC Nitrogen Ammonification Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 8.966086285 8.814765692 8.429773092 8.285743502 8.166371174 7.932325877 7.732037435 7.739432156 7.963428037 7.879374245 8.294480342 25026963 ZntA Metal Resistance Zinc Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 8.2955299 8.637437808 8.058665782 8.329020229 8.458362958 8.735356711 8.613534418 8.34280439 8.881686214 8.74261577 8.633804183 283438641 sigma_70 Stress Sigma factors Pirellula staleyi DSM 6068 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Pirellula;species:Pirellula staleyi; 8.306087622 8.519209531 8.191128901 8.465194443 8.57433314 8.226621983 8.503361413 8.563277313 8.405007131 8.769820554 8.709633975 8.451098801 29830060 4HBH Organic Remediation Aromatics BTEX and related aromatics Streptomyces avermitilis MA-4680 8.655747296 8.495664345 8.381235551 8.207479608 8.092742664 7.851338405 8.047792924 8.156106037 7.952030164 8.223784803 8.413348108 8.194635388 226319694 katE Stress Oxygen stress Deinococcus deserti VCD115 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 8.180155127 8.194383459 8.271392921 8.042030608 8.1221127 7.901503861 7.949905505 8.289640928 8.215253161 8.294066925 7.891603825 8.129457552 116068046 pstB Stress Phosphate limitation Synechococcus sp. RS9916 8.835279475 8.510469596 8.838513698 8.144868756 7.974736486 7.607385803 7.785308151 8.080247104 7.994994406 7.793831411 8.181697944 254470730 narJ Stress Oxygen limitation Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 10.48513221 10.54795775 9.955586721 10.72889069 10.73815887 10.78991411 10.77557066 10.81947082 10.89022275 10.66411326 10.73764116 10.63899718 111224847 AceB Carbon cycling Carbon degradation others Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 8.44936611 8.112001866 8.433964218 8.439991702 8.428355608 8.424184256 8.203042446 8.561335385 8.542460925 8.436177658 8.492339809 8.049563739 90954651 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.601931425 8.891443821 8.486963389 8.023483923 7.855557329 8.481639698 9.159753074 8.551255348 8.588282973 8.317467472 8.442710102 8.231416307 194359404 merP Metal Resistance Mercury Pseudomonas aeruginosa superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.229866844 8.22287164 7.830350363 8.248275656 8.317860943 8.395631792 7.208068403 8.684094514 7.788097336 7.834432901 7.727388675 221739355 pcpE Organic Remediation Herbicides related compound Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 8.87488998 9.117844789 8.799890872 9.002523953 8.89249383 8.912206416 9.052595439 8.867219035 9.068934658 9.180980163 9.437290303 8.972040291 154253602 sigma_24 Stress Sigma factors Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 9.949090653 10.04809717 10.03297506 9.630832413 8.673289879 9.387480348 9.694972838 9.761644446 83591940 pstB Stress Phosphate limitation Rhodospirillum rubrum ATCC 11170 8.239908411 8.366651083 8.200141528 8.042601994 7.753986845 8.016848307 8.428232439 8.20256987 8.242305424 8.157765977 8.222444942 157804813 AprA Sulphur adenylylsulfate reductase Chromatium okenii 8.253937023 8.360105771 8.318803751 7.612562621 7.971746235 7.847303969 8.262074673 7.872323485 8.1708075 7.852660259 7.728119986 7.72267839 78516023 pheA Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 9.486537497 9.374000215 9.548404501 9.457342448 9.556264108 9.473336163 9.358644482 9.559362288 9.258794744 9.644409942 9.615969034 9.31445112 193160552 APS_AprA Sulphur adenylylsulfate reductase bacterium enrichment culture DGGE band aps2 8.931771576 9.000386222 9.177193161 8.762122531 8.932295623 8.882640782 8.783824264 8.615013383 8.607811637 9.117489057 9.300332884 8.990302983 119383078 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 10.28567953 10.00972644 10.33764361 9.245366372 9.235204147 9.316644494 9.398822811 8.916595108 9.394355616 9.371860532 9.355337355 9.460224385 108767070 catB Organic Remediation Aromatics BTEX and related aromatics Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 8.260612923 8.283626602 8.284845742 7.519267421 7.591636669 7.57006154 7.40583901 7.366198298 7.737008691 7.631068088 7.377097938 7.61273201 81176593 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.541839099 8.442236141 8.376508434 7.85234828 8.050344739 8.227166895 8.426740379 7.471249144 8.830115465 7.777683659 8.007476645 7.945770592 66876305 phtA Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. TFB superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.494777648 8.152390531 7.887732487 8.37214751 8.25012016 8.132587957 8.104667131 8.043507516 8.067104793 223470353 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.70895441 8.668307931 8.223925297 8.890534894 8.44186756 8.002155871 8.922134895 8.897298018 8.548462444 8.344389778 8.317864532 114707536 BchY other category chlorophyllide reductase Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 8.118965323 8.213230454 7.834984377 7.44044428 7.769419367 7.94596893 8.169566216 8.357780622 7.84813385 7.979492326 14090308 dsrA Sulphur sulfite reductase Desulfovibrio cuneatus superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 8.054735072 8.276495703 7.087716669 7.186166294 7.310027622 7.056161045 7.398129312 6.821252934 7.278560591 82949451 gyrB other category gyrB Nocardia sp. Hou_blue superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Smaragdicoccus; 8.219357119 8.020890725 8.221151351 8.071002481 7.832605986 8.115069401 8.098952665 226356151 nplT Carbon cycling Carbon degradation Starch Deinococcus deserti VCD115 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 8.664643758 9.196463891 8.509926797 8.131957265 7.338361022 8.717734521 9.038352073 8.540446972 8.725876474 8.445552121 8.729969623 8.528749131 222081546 dnaK Stress Heat shock Agrobacterium radiobacter K84 9.356968499 9.319779933 9.412523529 9.067951919 9.08994061 9.176112033 8.82665432 9.097958999 8.663033338 8.975122975 8.946191676 9.242418682 2984256 pstS Stress Phosphate limitation Aquifex aeolicus VF5 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Aquifex;species:Aquifex aeolicus; 8.724597933 8.920793021 9.041418514 7.707450506 7.396295632 7.680207915 7.781536684 7.793269956 8.331087367 7.77737912 8.008735457 7.678399034 118730993 proO Organic Remediation Aromatics Other aromatics Delftia acidovorans SPH-1 8.218212721 8.431009207 8.870985588 8.161670845 7.834374962 7.933013193 8.291915588 7.900217389 8.563266424 8.1399336 8.013740194 8.133254802 152145046 gyrB other category gyrB Beggiatoa sp. SS superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Beggiatoa; 7.431651579 7.340804505 7.793353653 7.985774691 7.42712988 8.083095633 7.401974873 7.356881864 7.679013999 113528870 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.377289407 8.494427821 8.429156214 8.113615316 8.05251643 8.590810732 8.955140579 8.07170561 8.840706438 8.282647749 7.883865748 8.090017063 71279436 ahpC Stress Oxygen stress Colwellia psychrerythraea 34H superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Colwelliaceae;genus:Colwellia;species:Colwellia psychrerythraea; 7.63647519 7.322483195 7.472694734 6.851116322 7.209023952 7.620246348 7.182246919 7.335574287 7.207874209 3157622 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 8.683921724 8.525822752 8.557963575 8.095169006 8.18401797 7.964527846 7.933868052 7.99107047 8.170555066 8.376839316 8.254845283 8.289822108 212540166 ureC Nitrogen Ammonification Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 8.253279298 8.159900774 7.778257307 7.741659271 7.792069722 7.57155402 7.804714456 7.819434718 8.203963371 8.033571922 8.041644609 214028659 sox Sulphur Sulphur oxidation Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8.818188536 8.753994165 9.006699891 8.715131422 8.621733535 8.515076223 8.639803822 8.75178228 8.93354749 8.619352873 8.723539903 8.448324527 121608631 gyrB other category gyrB Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 9.055973719 8.545804563 8.076098402 8.964885996 8.73869768 8.899806029 8.902177154 8.831862784 8.672979745 8.252345884 8.453286335 8.173840916 146190810 SilA Metal Resistance Silver Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.628028874 8.61491096 8.524216363 8.880259258 8.890426445 8.905126801 8.714196174 9.01979251 8.859422227 8.880603242 8.779827452 8.856991282 119962147 dnaK Stress Heat shock Arthrobacter aurescens TC1 8.800265153 8.616827083 8.851937418 8.399164512 8.259017456 8.286869517 7.984864715 8.154125611 8.144032632 8.219519396 8.290414817 8.35013993 218267437 atzA Organic Remediation Herbicides related compound Clostridium hylemonae DSM 15053 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 7.750915932 7.432598474 7.453212094 7.719905823 7.759452751 7.687728956 7.602012619 9295226 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.919063389 7.802894024 7.265192069 7.149488983 7.122185035 6.792325002 6.697634831 7.345048656 7.157922911 6.924384955 110818259 tfdA Organic Remediation Aromatics Chlorinated aromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.408050511 8.936406712 8.563696891 8.175531233 8.672455775 8.892027031 8.482240079 8.80891045 8.195853794 8.677172628 8.644352502 212531193 glucoamylase Carbon cycling Carbon degradation Starch Penicillium marneffei ATCC 18224 7.122333729 7.062054639 7.252521909 7.187765359 7.303525812 197625183 catB Organic Remediation Aromatics BTEX and related aromatics Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 9.474791184 9.464115847 9.552174304 8.959667411 9.065585008 9.056985705 9.211786341 9.257067674 8.982704414 9.276902969 9.380687192 9.376674863 86139496 Catechol Organic Remediation Aromatics Other aromatics Roseobacter sp. MED193 8.552634556 8.607931829 8.70237165 8.089970805 7.991305808 7.926084343 7.661686827 7.849590926 7.97738885 8.057984936 8.034681165 7.792086438 148271365 nmoA Organic Remediation Aromatics Nitoaromatics Clavibacter michiganensis subsp. michiganensis NCPPB 382 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 8.677101907 8.209046242 8.26946078 8.645761164 8.245822923 7.953334946 8.557439546 8.562390891 8.429272766 8.647835265 7.864259353 194682551 dmsA Organic Remediation Others Proteus mirabilis HI4320 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 8.147102163 7.993468229 8.474161952 7.636000613 7.582692087 7.678735692 7.157884951 7.134695994 7.851685634 7.60115185 7.353246774 7.866240197 145223453 CadA Metal Resistance Cadmium Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 9.382768837 9.483264694 9.489240245 9.374273917 9.437624177 9.1615362 9.41628928 9.78709831 9.311686973 9.672253081 9.56442331 9.600550805 148832160 pstB Stress Phosphate limitation Erythrobacter sp. SD-21 8.446031412 8.424670168 8.425383493 8.122875586 8.403346695 8.887723951 9.088543647 8.747952726 8.988206801 9.119042311 9.000614541 8.957676253 169793466 narG Nitrogen Denitrification uncultured bacterium 9.109845911 8.942033368 8.959091771 8.506491935 8.411787498 8.344990715 8.534863914 8.696676309 8.557840045 8.288234875 8.467484122 170124150 B_lactamase_C Antibiotic resistance Beta-lactamases Escherichia albertii TW07627 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 8.290412063 8.127008034 7.831344934 8.08933281 7.554834542 7.61340936 8.020987857 8.154479385 7.975907237 7.407587441 8.353532908 90954571 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9.054078556 8.954131436 8.596935917 8.762579847 8.658037753 8.76458405 8.723324903 8.844096445 8.64726358 8.903509514 9.094269527 9.069988761 170770077 alkK Organic Remediation Others Escherichia albertii TW07627 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 8.685984647 8.521526454 8.594604859 8.764571693 8.942739974 7.884499143 8.759458445 8.420337786 8.696258292 9.07387204 8.004259999 156973805 CopA Metal Resistance Copper Vibrio harveyi ATCC BAA-1116 8.470278448 8.638713106 8.577136998 7.616667828 7.568942445 7.325767527 7.47966027 7.778187731 7.493594159 7.517498902 53828149 dsrA Sulphur sulfite reductase uncultured Desulfovibrio sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 8.329525953 8.300324536 8.472325886 8.151332372 8.046285378 7.811105233 8.134230214 8.52804989 8.416360479 8.306925709 8.166708977 8.419878753 145590808 CopA Metal Resistance Copper Pyrobaculum arsenaticum DSM 13514 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum arsenaticum; 8.881043732 9.0364565 8.839303066 8.202735816 7.746137148 8.198095675 7.689832257 7.630115719 8.167820534 8.314071983 8.201357246 8.389770833 89343625 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 8.945795802 8.991330917 9.310812891 8.475023266 8.146794089 8.345654993 8.211571685 8.085978159 8.216388865 8.13119352 8.599567027 62512284 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9.142072429 8.923555562 9.071381166 8.421525397 8.621221065 8.64464422 8.415884561 8.858852856 8.538671289 8.804145944 8.756233018 8.936716979 159186027 cydA Stress Oxygen limitation Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.360503562 8.0865738 8.382840885 8.08400457 7.916800635 8.328895518 8.388029929 8.064078496 8.679549381 8.541228316 8.57797483 8.433338329 199652761 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.642919404 7.738557074 7.12904664 7.726477423 7.496073155 7.648913954 7.127460526 7.125646068 164606904 nagI Organic Remediation Aromatics Aromatic carboxylic acid Arthrobacter phenanthrenovorans 9.379658568 9.366355749 8.523768329 8.603357729 9.058743658 9.027806525 8.95482796 9.097889388 8.889531303 9.080119249 9.098708905 150384851 pstA Stress Phosphate limitation Victivallis vadensis ATCC BAA-548 7.211715281 7.123827957 7.565212781 254431180 clpC Stress Protein stress Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 8.404062245 8.481753814 8.608635665 8.67177481 8.675698757 8.347596861 8.265296802 9.055321765 8.535680601 9.018975536 8.7795382 8.905990439 83637000 glnA Stress Nitrogen limitation Hahella chejuensis KCTC 2396 9.236362939 9.375184118 9.215907462 8.850687436 9.553559656 9.302262276 9.756196144 8.374691655 9.579666783 8.580062537 8.878546824 8.504738506 269838361 sigma_24 Stress Sigma factors Sphaerobacter thermophilus DSM 20745 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 9.374005644 9.359378084 8.976609951 8.483822231 8.515758557 8.519013989 8.64655584 8.399897075 8.46094155 8.773940492 196479456 sigma_70 Stress Sigma factors Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 8.755586303 8.628071888 8.616830658 8.323768557 8.201073413 8.280970126 8.866110741 8.139769294 8.938172361 8.242142295 8.345389112 8.163606736 239803879 hrcA Stress Heat shock Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 8.556703288 8.318488799 8.309566731 8.244992989 8.061978404 8.227091754 8.513818197 8.252984502 8.403178845 7.911535176 7.844390433 7.975571594 146406801 nmoA Organic Remediation Aromatics Nitoaromatics Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.47654761 8.375015291 8.35051654 7.802504052 7.363079464 7.802392677 7.973889162 7.796532816 8.382305983 7.727468035 8.095975325 7.922795283 197758060 pcpB Organic Remediation Herbicides related compound Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.410029943 8.266432465 8.463721402 7.866226004 7.978778371 7.944374596 8.438492315 8.116936816 8.369502746 8.401680068 211589156 alkJ Organic Remediation Other Hydrocarbons Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 8.465118249 8.328387563 8.312901486 7.761848545 8.152978182 8.294854572 8.866134947 8.188604285 8.25208498 8.235098884 8.197476022 2983102 grpE Stress Heat shock Aquifex aeolicus VF5 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Aquifex;species:Aquifex aeolicus; 7.532074815 7.179938094 7.038527441 6.968454203 7.329724266 91788126 pstB Stress Phosphate limitation Polaromonas sp. JS666 8.571619041 8.632193829 8.861512718 7.787148251 7.719582259 229204702 narI Stress Oxygen limitation Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 9.945506703 9.92770183 9.871892734 9.218124935 9.079246113 9.253410126 9.245376529 9.024596386 9.222566703 8.988677105 9.142115336 9.270883332 82701981 silC Metal Resistance Silver Nitrosospira multiformis ATCC 25196 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira;species:Nitrosospira multiformis; 8.773765278 8.773838873 8.943130781 8.295973546 8.049593999 8.170608662 8.000571178 7.852234651 8.325638234 8.04656157 8.039791209 8.28706485 224539027 sigma_24 Stress Sigma factors Bacteroides cellulosilyticus DSM 14838 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 9.79362254 9.634914095 9.698961216 8.847860365 8.812508263 8.866708433 8.746830856 8.734105473 9.129721445 254419911 sigma_70 Stress Sigma factors Brevundimonas sp. BAL3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas; 11.80046043 11.85499197 11.96512181 11.19977234 10.70279689 11.0956289 10.92609513 10.82879135 11.38280538 11.20063151 11.16297668 10.86134223 198268323 hdnO Organic Remediation Aromatics Heterocyclic aromatics Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 8.612882863 8.103158011 8.229406826 8.016842301 7.569191231 7.826969973 7.581614432 8.054351727 7.635888667 7.366830094 7.590017508 229817372 sigma_24 Stress Sigma factors Bifidobacterium angulatum DSM 20098 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium angulatum; 9.339962071 9.217213029 9.19451287 9.696851276 9.515556655 9.375070502 9.281494252 9.264048059 9.361000931 9.397502906 8.891512582 283953506 cap virulence capsule Acidaminococcus fermentans DSM 20731 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Acidaminococcus;species:Acidaminococcus fermentans; 8.522361524 8.261440715 8.6255736 7.869685736 7.833213588 7.560238225 7.204669657 7.282431985 7.788692718 7.842128952 7.802365155 8.222351 55469821 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.438406257 8.349471326 7.995332778 7.774142829 7.714657243 7.407248404 7.810378949 7.93545383 7.931939942 7.429214147 7.769635024 227329977 SMR_antibiotics Antibiotic resistance transporter Pectobacterium carotovorum subsp. carotovorum WPP14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 8.399640727 7.837697545 7.954158271 8.270307237 8.042082641 7.724647775 8.329765113 8.02149253 8.060717571 8.086736531 8.297531795 281316538 obgE Stress Radiation stress Victivallis vadensis ATCC BAA-548 superkingdom:Bacteria;phylum:Lentisphaerae;family:Victivallaceae;genus:Victivallis;species:Victivallis vadensis; 8.785588861 8.458059071 8.320602805 7.78952749 7.854663294 8.145459216 7.788868863 8.281645716 7.744659453 7.661007617 7.866351167 217503113 CopA Metal Resistance Copper Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 9.088447805 8.894747183 8.680556214 8.436551094 8.386459388 8.324560717 56312526 bbsG Organic Remediation Aromatics BTEX and related aromatics Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 8.230708413 8.202033461 8.273100467 8.165426677 8.001950688 8.249283265 8.275232509 8.388569474 8.277185797 7.967734745 7.95594947 110679874 phoB Stress Phosphate limitation Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 9.020382828 8.829078336 9.110973103 8.674480563 8.431664586 8.391683989 8.836729626 8.301599121 8.580823631 41326145 TerC Metal Resistance Tellurium Corynebacterium glutamicum ATCC 13032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 8.885724457 9.106910358 8.650149634 8.427258979 8.253641471 7.71363944 8.245597574 8.402126554 8.36871699 8.513752001 86747905 pstB Stress Phosphate limitation Rhodopseudomonas palustris HaA2 8.982972982 8.269219887 8.572017091 8.777246998 8.733893296 8.439603998 8.955901442 8.6603197 8.882010074 8.617858627 8.671078306 8.733364261 227191680 amyA Carbon cycling Carbon degradation Starch Lactobacillus brevis subsp. gravesensis ATCC 27305 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus brevis; 8.369485598 8.508757352 8.451692058 7.68919174 7.570923875 8.337693152 8.70374014 7.576985284 7.836068244 8.202875882 7.907912475 29160313 exoglucanase Carbon cycling Carbon degradation Cellulose Verticillium tenerum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;genus:Verticillium; 6.994918851 7.363300325 7.00968491 6.942562734 6.99271258 213925440 NirB Nitrogen Assimilatory N reduction Pseudomonas syringae pv. tomato T1 8.760754868 8.582756514 8.709482255 8.856999077 8.939419187 8.626730528 8.688751557 9.012700954 8.892552145 8.993483726 8.864643972 8.626718089 108766795 nitA Organic Remediation Aromatics Other aromatics Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 8.52723533 8.431200684 8.801785563 7.984662705 7.881124408 7.562902845 7.641150104 145701990 sulfur_reductase Bioleaching Sulphur Metallosphaera sedula DSM 5348 8.814758482 8.481718828 8.91155871 8.395202901 8.25756727 8.244212266 7.674584208 7.845431359 7.78986926 7.791872305 8.293845806 66048001 endochitinase Carbon cycling Carbon degradation Chitin Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 8.626763044 8.435352317 8.785814282 8.265104317 8.194924905 8.04637469 7.868471188 7.996951697 7.842924267 7.998564241 8.065845804 78610846 srt virulence surface protein Lactobacillus sakei subsp. sakei 23K superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus sakei; 8.238010461 8.159181373 7.977628677 7.706938688 7.810038341 8.191387329 7.858814312 8.152859966 7.876769722 7.928503065 7.99358653 145570968 ChrA Metal Resistance Chromium Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 8.44891818 8.727629587 8.735567035 8.747493723 8.50214915 8.852659995 9.34369958 8.719485456 9.412667848 9.243846822 9.297711138 269935324 obgE Stress Radiation stress Mobiluncus mulieris 28-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus mulieris; 9.764382617 9.796974461 9.933989322 9.241578909 9.123613638 8.992712533 9.124786005 9.277845241 9.025057534 9.286645899 9.178791972 9.491626229 37925853 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.477147675 8.910003534 8.657308148 8.353800388 8.421004555 8.276272 8.403127725 8.63182302 8.420827231 8.751239749 8.498206037 8.377925624 17431765 pilin virulence pilin Ralstonia solanacearum GMI1000 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 8.227000346 8.308865555 7.625929255 7.814569006 8.075372216 8.11430645 7.594165167 8.109444068 8.062217231 8.327706516 8.435478015 156742214 CadA Metal Resistance Cadmium Roseiflexus castenholzii DSM 13941 8.718535155 8.879837629 8.914612581 7.544497197 8.257962429 8.343467304 8.734053312 8.376760525 8.973044016 7.890076533 7.961415495 118003262 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.430607526 8.641103493 8.437693575 8.256191357 8.683573044 8.572280938 8.490836846 8.464432411 8.300812071 121605839 bclA Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 10.07311399 10.36727183 10.30694727 10.37827518 10.45136461 10.44428885 10.23701369 10.56282339 9.951953014 10.31970302 10.32179481 10.25003962 237499684 amyA Carbon cycling Carbon degradation Starch Tolumonas auensis DSM 9187 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Tolumonas;species:Tolumonas auensis; 6.993177131 7.088060184 7.297068698 7.468967256 6.656649408 7.018656187 7.270233125 7.503759504 198252348 phn Organic Remediation Herbicides related compound Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 8.211782613 7.992737951 7.780260525 7.578487997 7.374404003 7.717609019 7.428376993 7.793932114 7.516788832 7.582405774 7.455942574 4204206 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Enterobacter sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 8.317538063 8.212882449 8.351811841 8.599946363 8.399477729 8.329470942 8.124412921 8.560129879 8.285439925 8.324562194 8.044311256 8.37360749 111221443 hrcA Stress Heat shock Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 8.514103552 8.349447349 8.730655572 7.910918259 7.314124191 8.197166964 7.7137799 8.024210847 8.090201662 77543338 cumA Organic Remediation Aromatics Other aromatics Sphingomonas sp. FCIB 9.3885697 9.498617529 9.320417216 8.861679293 8.638277965 8.536108356 8.79172498 8.687076083 8.974522435 8.648617172 8.778829948 8.683735265 20501981 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.943840329 8.045629476 7.385472913 7.394790766 7.307404683 7.088275421 7.339156758 7.779895647 7.348982701 7.404856841 7.536578961 163259593 grpE Stress Heat shock Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 9.04216462 8.981386167 8.364721737 9.922866098 9.843834676 8.902870071 9.631169286 8.8783374 9.26330615 9.585307663 9.184180441 89350104 pcaG Organic Remediation Aromatics Other aromatics Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 10.15876376 9.865339218 10.23569971 9.582975313 9.446420964 9.235162373 9.303916039 9.60963571 9.537883504 9.542613762 9.561972262 9.722742557 118133536 tutFDG Organic Remediation Aromatics BTEX and related aromatics Clostridium novyi NT superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium novyi; 8.627654244 8.538013227 8.648072581 8.005027001 7.73222965 7.713453387 7.223753095 7.188104758 7.540114702 7.750149808 7.680211054 170748759 pstB Stress Phosphate limitation Methylobacterium radiotolerans JCM 2831 9.976090839 9.783088472 9.835890173 9.83518227 9.454739868 206576922 nasA Nitrogen Assimilatory N reduction Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 8.872856122 8.3418434 7.83684776 7.878212528 8.113656403 8.351710904 7.765309376 8.461281436 7.621058893 7.742032958 7.70930963 148502595 MFS_antibiotic Antibiotic resistance transporter Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 9.233443157 8.998229264 8.862108866 8.486518574 8.649559839 8.261255246 8.430566699 8.724426384 8.576993312 8.412803587 8.284153515 114564663 pimF Organic Remediation Aromatics Aromatic carboxylic acid Shewanella frigidimarina NCIMB 400 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella frigidimarina; 8.766795386 8.776803534 8.919672542 8.579364285 8.531138311 8.082299388 8.430927077 8.498152851 8.487459549 8.590544638 8.461596942 8.442113924 66768166 atzA Organic Remediation Herbicides related compound Xanthomonas campestris pv. campestris str. 8004 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 10.18021864 10.06557634 9.711118909 10.14615815 10.4023807 10.60009032 10.29498454 10.67404023 10.46700439 10.38060439 10.3384024 10.31187722 163668072 aoxB Metal Resistance Arsenic Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 8.625396418 8.4503884 8.60608778 8.184343281 8.187331305 8.377222691 7.668238626 8.068455514 7.992105364 8.348219132 8.281784668 8.508662251 163261215 fnr Stress Oxygen stress Bordetella petrii 9.096102202 8.963969282 8.980875465 8.407945488 8.369117609 8.376481961 8.680351684 7.452769217 8.778569456 8.006255705 7.819437859 8.262099153 118053356 CadA Metal Resistance Cadmium Comamonas testosteroni KF-1 8.960349465 8.657855375 8.49526985 8.972726884 9.005864222 8.599089635 8.960191221 8.839190055 8.760317167 8.741081329 8.524759634 8.630728639 152030471 AceB Carbon cycling Carbon degradation others Anaeromyxobacter sp. Fw109-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 9.271412578 9.229147994 9.033224256 8.845725005 8.897517723 9.588828401 9.166703877 9.531823914 8.929351908 8.842179115 8.898933431 62426150 pcaG Organic Remediation Aromatics Other aromatics Brevibacterium linens BL2 9.018648515 8.715645744 8.984275971 8.813543458 8.809640315 8.585870221 8.637576766 9.281105857 8.852390103 8.952244343 8.708267854 8.870253279 171096323 cap virulence capsule Burkholderia ambifaria MEX-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 9.853616443 9.351426289 9.590958929 8.968073282 8.8207478 8.63482512 9.366674898 8.658846361 9.194913913 9.160168559 9.21703316 95113224 ppx Phosphorus Phosphorus utilization Pseudomonas superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae; 10.35087255 10.46557463 10.57740743 10.3146679 10.56310913 10.24414052 10.27104303 10.47813228 10.30992645 10.52717085 10.40755473 9.965572544 171994758 iro virulence Burkholderia ambifaria MC40-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 8.418675632 8.076903149 8.433453051 8.29058231 8.380567429 8.127786427 8.253458298 8.191453421 8.323786047 8.39393368 8.33555871 8.044957257 166714122 Catechol Organic Remediation Aromatics Other aromatics Xanthomonas oryzae pv. oryzicola BLS256 8.774788722 7.732303217 7.822153758 7.945653938 7.728811297 7.89895943 7.929989358 7.588084606 89340989 ureC Nitrogen Ammonification Mycobacterium flavescens PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.420694963 8.191514743 8.45190344 8.382984468 8.249630977 7.994056591 8.037471268 8.746252543 8.348846172 8.620496788 8.566299506 8.639773598 88191273 ppk Phosphorus Phosphorus utilization Campylobacter jejuni subsp. jejuni 84-25 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter jejuni; 8.049896309 7.828914644 6.89644169 7.280425579 241880386 hydrogenase Energy process Energy process Desulfovibrio vulgaris RCH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 9.086961678 8.821661119 9.068305177 8.592341288 8.573839721 8.395010788 8.398893915 8.683880419 8.66476415 8.477063934 8.241311073 8.635690704 121611775 fnr Stress Oxygen stress Verminephrobacter eiseniae EF01-2 8.016174295 8.215206357 8.150297315 8.348771605 8.187426973 8.044148762 8.60671315 8.324060887 8.384291481 8.334562854 8.299821944 149201735 proV Stress Osmotic stress Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.266778087 8.042028281 7.446778094 7.809517811 7.859825472 8.169353435 7.299012132 8.253835897 7.478042844 7.524816192 7.998633221 163746401 ChrA Metal Resistance Chromium Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 8.50341005 7.83031217 8.644033208 7.924435325 7.883440158 7.716529544 7.842728798 7.564048304 8.170326357 7.627564911 7.745447463 7.474987071 12054827 ppk Phosphorus Phosphorus utilization Streptomyces griseus subsp. griseus 9.806556668 9.596209642 9.608557111 9.988243135 9.872918196 9.684888465 10.08661325 9.96589239 9.486459887 9.79209367 9.703377615 9.600635688 157919012 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Salinispora arenicola CNS-205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 10.11484514 10.096092 10.08216925 10.02321992 9.998668673 10.17032109 9.722213218 9.938000384 9.893626379 10.00996354 10.32030493 9.997338325 283822861 obgE Stress Radiation stress Rhodomicrobium vannielii ATCC 17100 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 8.939875522 8.82514822 8.613251429 8.450715649 8.720237198 8.972716498 8.755702734 8.709043107 8.517388028 8.273894303 8.303383996 14023474 linC Organic Remediation Pesticides related compound Mesorhizobium loti MAFF303099 8.198286622 8.128820843 8.375320814 8.076643621 8.034718647 8.082792139 7.845942874 8.063411903 8.131187608 8.110611677 8.069074072 7.972362821 1652139 TerZ Metal Resistance Tellurium Synechocystis sp. PCC 6803 8.376889751 7.944691945 148557259 mauAB Organic Remediation Herbicides related compound Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 9.682915113 9.863081699 9.483691672 10.12381832 9.80920034 9.798573546 9.614096685 10.26916671 9.637899715 9.948174318 10.05467477 9.591455495 163747557 CadA Metal Resistance Cadmium Oceanibulbus indolifex HEL-45 9.257308537 8.878600365 8.585960574 8.564469222 8.909570958 8.630621369 8.811770935 9.086940092 8.589764584 9.035493083 9.116478688 8.890487204 256393616 narJ Stress Oxygen limitation Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 9.352608687 9.267047998 9.546363934 9.207165013 9.308175316 9.139217474 9.126407854 9.198798563 9.114827197 9.294252636 9.446240764 8.631060034 71737576 MFS_antibiotic Antibiotic resistance transporter Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 9.251688031 9.235598747 9.266607003 9.488468454 9.534670029 9.128124299 9.163043912 9.340298273 9.460548825 9.396017704 9.022459586 8.996482995 46850308 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.685464305 8.392771238 8.574956868 8.644322128 8.500879807 8.246644994 8.148433093 8.197807262 8.850323104 8.261591384 8.102121142 8.337834882 16506204 nasA Nitrogen Assimilatory N reduction uncultured marine bacterium superkingdom:Bacteria; 9.18222869 8.88683709 9.14945601 8.128413672 8.584380999 8.366655728 8.188147291 7.732538607 8.598801646 8.255093538 8.38711537 7.945242281 124483474 aclB Carbon cycling Carbon fixation Herbaspirillum seropedicae superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum; 10.72155431 10.56364406 10.24013396 9.503133223 9.259707695 9.690473586 10.12076663 9.447181368 10.00944505 9.365577978 9.556602002 9.447660884 110819013 chnB Organic Remediation Other Hydrocarbons Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 9.090532688 9.167016983 9.071741312 8.881133314 8.827980207 8.64587197 8.995498525 8.84420583 9.110402925 9.202032629 8.87766863 163867291 amoA Nitrogen Nitrification 8.876346544 8.854227875 8.746843317 8.391867432 8.433488167 8.161313142 7.838037859 8.054333913 8.361113821 7.99186168 8.050288631 8.22050196 220726065 katE Stress Oxygen stress Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 9.440841392 8.312810538 8.419679463 9.381878398 9.273091859 9.033478187 149914287 sigma_70 Stress Sigma factors Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 9.457968052 9.295743949 9.176753902 8.746737153 8.638984996 8.754344327 8.86100625 8.744836085 8.780676012 8.643411449 8.817531597 8.948015521 121588763 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 7.922374986 8.240478271 7.593050205 7.579779923 7.5628227 7.533537092 7.912531072 7.864713206 7.827009971 7.57346288 7.597558926 145693266 mmoX Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 9.062841739 9.113853199 9.184516911 8.856985304 8.427062545 8.522223165 8.266427728 8.228282651 8.344751494 8.196645389 8.319653909 8.710897494 255505624 sigma_24 Stress Sigma factors Bryantella formatexigens DSM 14469 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;species:Bryantella formatexigens; 8.686241362 8.437622973 8.621360373 8.706837259 8.921165013 8.316279544 8.602961699 8.653575526 8.429102805 239506387 amyA Carbon cycling Carbon degradation Starch Kosmotoga olearia TBF 19.5.1 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Kosmotoga;species:Kosmotoga olearia; 7.622133584 6.833742471 7.384872382 7.53662029 7.783038231 148499101 oxdB Organic Remediation Aromatics Nitoaromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 9.031392049 8.006602622 8.234323485 8.988882118 8.949053865 8.484823157 8.877405714 8.794834069 8.767633999 8.635025486 8.504182348 8.790294566 187930328 sigma_24 Stress Sigma factors Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 9.386466597 9.288018695 9.199168147 9.628263589 9.561487159 9.325720119 9.368616729 9.83073588 9.299289818 9.618268301 9.638028892 9.797101948 118760441 tfdA Organic Remediation Aromatics Chlorinated aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 9.131398236 9.047609624 9.064966919 8.790719615 8.874237805 8.832881659 9.161070707 8.827352712 8.981146132 8.556937022 8.651694295 8.57859751 239832724 AceB Carbon cycling Carbon degradation others Ochrobactrum intermedium LMG 3301 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 8.999900923 8.99775721 8.582404015 8.840817676 8.97838307 9.048721865 9.251310148 8.955822274 8.660836001 8.823705202 8.85665711 8.411190345 115371102 atzA Organic Remediation Herbicides related compound Stigmatella aurantiaca DW4/3-1 9.649613038 9.495796015 9.507267982 8.832469961 8.886349441 8.794204767 121304061 ChrA Metal Resistance Chromium Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.227369621 8.269306467 8.159192962 8.225495814 7.991755909 8.004834917 8.20909233 8.254372682 8.128832728 7.983339367 7.807762853 7.81729887 15899375 CopA Metal Resistance Copper Sulfolobus solfataricus P2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus;species:Sulfolobus solfataricus; 8.527485458 8.578050168 8.41761291 7.902104559 7.759374426 7.695621733 7.463216395 7.318001987 7.985442234 7.494643189 7.426104833 7.788596378 167840286 type_III_secretion virulence secretion Burkholderia thailandensis MSMB43 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 8.981589419 8.494994488 8.713618723 8.723156522 8.614730327 8.346752744 8.643018068 8.480975993 8.480870497 8.41920506 8.413174042 8.620607963 171059243 sigma_70 Stress Sigma factors Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 8.71932241 8.948383893 8.917740063 9.213769349 9.057320274 8.710733073 9.125870476 9.053155432 8.838912777 8.904918929 8.705458126 8.751452251 28629803 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.643470939 8.7474196 8.572423109 8.35408234 8.34993691 8.186366094 7.499811862 7.65296436 7.784261332 7.904968469 7.940777848 227980505 amyA Carbon cycling Carbon degradation Starch Tsukamurella paurometabola DSM 20162 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 9.035956617 8.997443774 9.146431115 8.782945731 8.640480855 8.438485726 8.750563355 8.748413821 8.596313137 8.84129823 8.673570738 8.657667145 21530832 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 8.762338985 8.877160232 8.481142192 8.290115294 9.161658009 8.72515995 8.401328351 8.731775161 78037339 pilin virulence pilin Xanthomonas campestris pv. vesicatoria str. 85-10 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas euvesicatoria; 8.645792518 8.486579402 8.534776815 8.323039774 7.920833214 7.921450932 8.126291717 7.981808474 8.251377728 8.110367099 7.949010672 8.162755661 170720362 nitA Organic Remediation Aromatics Other aromatics Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.700681794 8.702860148 8.779208915 8.634337813 8.614838805 8.536025402 8.544657032 8.757545559 8.26967777 8.638851769 8.27407026 8.505396242 256775104 glnA Stress Nitrogen limitation Streptomyces hygroscopicus ATCC 53653 8.812122335 8.680662555 8.637925085 8.522280356 8.355957669 8.38601993 8.750579086 8.666424759 8.63818614 8.97028917 9.047147913 8.949343928 151559696 CopA Metal Resistance Copper Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 8.911241006 8.357525129 8.328524254 7.395146059 7.476448293 7.920956719 7.409126353 7.453886647 7.811549864 7.401844018 7.23711386 7.739242969 90104565 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.841389959 8.806426898 8.772578809 8.802931046 8.868810934 8.54279256 8.836501293 9.39519564 8.821823303 9.234939544 8.758399848 9.037940837 149231409 CopA Metal Resistance Copper Pedobacter sp. BAL39 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter; 9.159149493 9.091813572 9.319267481 8.778458632 8.557650242 8.423761171 8.371343279 8.211379277 8.376051058 8.18614288 8.264200231 8.705835515 84517008 HBH Organic Remediation Aromatics BTEX and related aromatics Loktanella vestfoldensis SKA53 8.189614424 8.438811672 7.584619596 7.313473442 7.475899422 7.453089114 7.14067087 7.386209718 7.130644478 7.403281126 214031990 sigma_32 Stress Sigma factors Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8.264656084 8.0622728 7.45444598 7.632922191 7.914893776 7.565376254 6.97079281 7.91967751 7.410896821 7.605308623 7.506649092 84780040 pnbA Organic Remediation Aromatics Nitoaromatics Sodalis glossinidius str. 'morsitans' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Sodalis;species:Sodalis glossinidius; 9.193954879 9.010664589 9.141083399 8.789639033 8.584530393 8.416987244 8.267526231 7.476640546 8.359754529 8.158677261 8.6095391 56684776 cmuA Organic Remediation Chlorinated solvents Aminobacter lissarensis superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Aminobacter; 8.749677775 8.63599291 8.239738214 8.176725897 8.253439479 8.595844541 8.583157176 8.230572011 8.769320075 8.342755844 8.451094437 8.338807578 83852012 ahpC Stress Oxygen stress Oceanicaulis alexandrii HTCC2633 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis;species:Oceanicaulis alexandrii; 8.411092762 7.99576986 8.199902509 7.916128464 7.676785517 8.228752465 7.704224369 7.244663306 8.135509057 7.458747987 7.531427663 7.700509706 7160915 nirK Nitrogen Denitrification uncultured bacterium wB75 superkingdom:Bacteria; 9.520226645 9.499630738 9.525801219 8.702242708 8.59617008 8.819885083 8.669429847 8.203979746 8.546768326 8.611286844 8.766512513 9.010158693 27125563 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.353751718 9.173424222 9.342488229 8.993308033 8.810689567 8.71151091 8.921515477 8.805173497 8.767204039 8.832310905 8.817752402 9.039896416 34558447 ZntA Metal Resistance Zinc Wolinella succinogenes DSM 1740 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Wolinella;species:Wolinella succinogenes; 8.604973494 8.440267909 8.328454514 7.807718834 7.754514799 7.88674951 7.759895428 7.419125702 7.672397446 7.710606618 7.651651194 261194902 ureC Nitrogen Ammonification Ajellomyces dermatitidis SLH14081 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 8.341738838 8.524740502 7.886229386 7.924931644 7.743866279 7.236792497 8.048218603 7.366520144 7.543914463 7.82049313 197210241 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.180634278 8.130771726 8.056630802 8.373949603 8.058768465 7.953346657 8.345138104 8.181728982 8.485389459 8.227511675 8.06453711 7.788467912 163757528 gyrB other category gyrB Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 9.623733188 9.586191616 9.720506493 8.879593667 8.731115577 8.405805027 8.84286078 8.310824765 52747747 nitA Organic Remediation Aromatics Other aromatics Pseudomonas sp. superkingdom:Bacteria;phylum:Proteobacteria; 8.886063023 8.55794993 8.871020332 7.92919478 7.955927095 8.070087061 7.870111119 7.693739492 7.959333695 8.0852542 8.310365348 8.224402315 6624274 bphF1 Organic Remediation Aromatics Polycyclic aromatics Comamonas testosteroni 8.834515202 8.67434267 9.058511264 8.585519309 8.18214116 8.150309486 7.813681705 7.79188452 8.219983964 7.869058874 8.124094124 7.931365373 260767298 pilin virulence pilin Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 8.833053943 8.43309862 8.983461206 8.180748797 8.587907913 8.398267793 8.757830971 8.473445404 8.845267193 8.410687698 8.829735951 8.9224384 197118551 CopA Metal Resistance Copper Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 8.24010634 8.192655732 8.480215128 8.397316942 8.572242221 8.224453804 8.166243786 8.571617463 8.380315944 8.421239842 8.254787424 8.005996683 187921270 xylA Carbon cycling Carbon degradation Hemicellulose Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8.376389992 8.648164103 8.440193648 8.028201633 8.124602256 8.123948703 8.106420031 8.05480548 8.309473469 7.737921693 7.95992899 7.973434613 149919767 fnr Stress Oxygen stress Plesiocystis pacifica SIR-1 8.60181538 8.708366895 8.721343106 8.300586366 8.046174894 7.892398291 8.369324648 7.874705408 8.525699431 8.034984953 8.030157118 7.912510313 117981428 tftH Organic Remediation Aromatics Chlorinated aromatics Burkholderia phymatum STM815 9.033632174 9.16381559 9.181069869 8.802280938 8.852510495 9.045701444 9.125248255 9.068075174 9.131608162 9.589938422 9.636795569 9.174302912 169884987 grpE Stress Heat shock Synechococcus sp. PCC 7002 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 10.20559253 10.06860113 9.994900403 9.84038454 9.761693206 9.786782666 10.26784823 9.877619356 10.07254818 10.00291124 10.3018399 9.925041573 46196366 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Thermus thermophilus HB27 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 9.23702046 8.798329176 8.699392192 8.856769881 8.802292948 8.542852648 8.632478633 8.579022856 8.71712834 8.562217618 8.664787272 8.357013778 167360492 nagG Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.934573834 8.66927176 8.833710301 8.427621477 8.339576378 8.124973246 8.052286233 8.271619466 8.149213601 8.383977896 8.275727077 116611733 katE Stress Oxygen stress Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8.903984587 8.794511631 8.337716925 8.466784791 8.522487221 8.645955589 8.460628897 8.401628359 8.507885434 8.791025923 8.936270395 8.762353825 28193601 bphB Organic Remediation Aromatics Polycyclic aromatics Ralstonia sp. SBUG 290 8.032293131 8.128751102 8.072501485 7.517089212 8.006014064 7.968438834 8.195291216 7.974708105 7.889186123 7.809672276 8.062169368 227496266 glnA Stress Nitrogen limitation Actinomyces urogenitalis DSM 15434 8.132622493 8.168972456 8.28121227 7.743127035 7.845762156 7.802540336 7.791796284 7.92654633 8.095371874 7.766459014 7.394112418 7.771776347 iegAssA6 AssA Carbon cycling Carbon degradation Others 8.849974057 8.710663566 8.786677844 8.424680571 8.465524341 8.360479788 8.274592913 8.151792495 8.27324577 8.241977566 8.46340608 149919858 sigma_24 Stress Sigma factors Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 10.49848813 10.67576489 10.57437646 9.889778435 10.50097647 10.56662924 10.90385308 10.13688625 11.11562254 10.35149874 10.3612941 10.36379053 222149091 pstB Stress Phosphate limitation Agrobacterium vitis S4 8.235659106 8.326250257 7.369100674 7.549359072 7.829613082 8.004719633 6.995121404 7.340431688 7.334841396 7.720906501 120553196 ahpC Stress Oxygen stress Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 9.137921672 9.232642908 8.735992293 8.855361699 9.181684919 9.391008893 9.650482684 9.786318963 9.471961558 9.797948554 9.871406265 9.939003503 224955848 Tet Antibiotic resistance other Eubacterium hallii DSM 3353 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium hallii; 8.261388189 7.993901655 7.464760533 7.401720439 7.412458478 6.967586253 7.685877968 7.787066117 7.574584986 7.670515081 114227950 Arylest Organic Remediation Aromatics Other aromatics Alkalilimnicola ehrlichei MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 7.194682234 7.360159546 7.42576529 7.21324278 7.336469772 7.73664578 7.481183639 7.299158519 7.727918156 91795532 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 9.888398759 9.739659809 9.698763833 9.609978927 9.288320878 9.200123657 9.58976995 9.615734271 9.668349643 9.57480946 9.732859566 9.62144757 240250662 cspB Stress Cold shock Bifidobacterium animalis subsp. lactis DSM 10140 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 8.620523731 8.667485643 8.717073051 8.614504923 8.565393909 8.424388142 8.587112686 8.809954866 8.680511555 8.649146692 8.491008926 8.651743154 116256194 B_lactamase_C Antibiotic resistance Beta-lactamases Escherichia coli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 9.218710983 9.299187189 9.287278945 8.817769356 8.64463425 8.855990584 8.987125479 8.609665583 9.287651268 8.884768093 9.123777511 8.872773189 242237696 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 8.388226652 8.247788164 7.672511917 7.578331891 7.835885503 7.41020333 7.383834797 8.046178114 7.589200169 7.906199674 217503829 sigma_32 Stress Sigma factors Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 8.181628687 8.106576588 8.228195002 8.391162241 7.929052044 8.154803289 8.546092309 8.248609646 8.027201139 8.24207317 8.138344238 194540496 pimF Organic Remediation Aromatics Aromatic carboxylic acid Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.523758745 8.297088049 8.334412633 8.19960158 8.209519765 7.954842917 8.23573183 8.25798369 7.988624795 8.337065291 7.995373055 53804609 pstA Stress Phosphate limitation Methylococcus capsulatus str. Bath 9.557130558 9.457298723 9.497473292 8.784978488 8.836617546 8.69945068 8.776991763 8.569996313 8.513662162 8.508389292 8.961740072 224018512 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Bacteroides coprophilus DSM 18228 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides coprophilus; 8.489164054 7.898351496 8.729415351 8.053654914 7.595723202 7.771492959 7.417788579 7.531055736 7.99694445 7.694567477 7.840497241 7.980307231 152993065 ArsC Metal Resistance Arsenic Sulfurovum sp. NBC37-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;genus:Sulfurovum; 8.337816731 8.426774466 8.323027953 7.778448776 8.660983738 8.088866269 8.259142283 8.647669265 7.683817852 92910775 phdG Organic Remediation Aromatics Polycyclic aromatics Mycobacterium sp. JLS 9.098122617 9.018348644 9.027491163 8.622393838 9.04036852 9.152726384 8.919633165 8.972203572 8.854323698 9.010879513 9.395809647 9.230770941 86565791 Xamo Organic Remediation Other Hydrocarbons Frankia sp. CcI3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.869320155 9.037513165 8.969977361 8.921055473 8.787845817 8.912811887 8.863022548 8.704451781 8.73977816 8.740829846 8.868561931 8.768078384 134052051 pimF Organic Remediation Aromatics Aromatic carboxylic acid Desulfotomaculum reducens MI-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum reducens; 8.114392857 8.092340644 7.392160049 7.37392017 7.449085103 6.808165894 7.08731425 7.134483395 7.50262744 27530062 gyrB other category gyrB Legionella pneumophila subsp. fraseri superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella;species:Legionella pneumophila; 9.241829045 8.898459702 9.044982189 8.359785393 8.432758054 8.290867937 8.238382144 8.041966221 8.31948905 8.226047789 7.982220188 8.461959 134101352 phtB Organic Remediation Aromatics Aromatic carboxylic acid Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 9.041762856 9.051668132 9.100103773 8.453368986 8.22937108 8.681802835 8.956269425 8.706097579 8.931540459 8.701208621 8.645872758 8.85105228 157085868 TerC Metal Resistance Tellurium Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 8.977995114 8.722019014 8.205292258 8.384450139 8.235856338 8.043088806 8.596803465 8.429200266 8.595381017 7.754634494 8.220118591 46917282 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.20296775 8.214667052 8.349570764 8.109524119 8.085921109 7.849944476 7.92266849 7.766656925 8.058942248 7.909432639 7.819339489 7.785028468 159185808 pcc Carbon cycling Carbon fixation Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.090280096 7.994538494 7.255814883 7.365441446 7.126301987 6.779125299 7.183676489 7.23604873 7.412566456 62003555 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.76981121 8.789964779 8.510142815 7.803443068 7.967874551 8.040508865 8.237357635 7.541808091 8.791630429 7.72468748 7.772225187 7.760744368 38232907 phoB Stress Phosphate limitation Corynebacterium diphtheriae NCTC 13129 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium diphtheriae; 9.233547299 9.260595197 9.265502967 8.521020222 8.552397844 8.42463447 8.49879841 8.549964742 8.581807355 8.458853863 8.474696646 8.687349062 269968452 pcc Carbon cycling Carbon fixation Vibrio alginolyticus 40B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 8.480560597 8.477896197 8.888175986 8.45143801 8.340369856 8.292513217 8.288679507 8.168850422 8.339052374 8.144513094 8.360531359 110817167 clpC Stress Protein stress Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 9.476190253 9.616357059 9.51706784 9.339597292 9.429564076 9.591551562 9.396686367 9.399659395 9.434166669 9.397027587 9.607668891 260910382 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Prevotella sp. oral taxon 472 str. F0295 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella sp. oral taxon 472; 9.470779976 9.21807996 9.29861115 9.42134641 9.459589096 9.003885058 9.385542147 9.725281548 9.368713616 9.414272343 9.287591745 9.469491273 88708804 pcc Carbon cycling Carbon fixation Flavobacteriales bacterium HTCC2170 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales; 8.888625893 8.688868092 8.899029497 8.24427498 8.250025873 7.913278014 7.800942986 7.413341877 8.266722582 7.794052226 7.568510271 8.051059055 84691528 ArsC Metal Resistance Arsenic Parvularcula bermudensis HTCC2503 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 8.267082321 8.444767267 8.286249698 8.22456802 8.309427805 7.993222682 7.756643236 8.091651861 8.477225044 8.10002363 7.968698011 8.186142119 82702765 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Nitrosospira multiformis ATCC 25196 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira;species:Nitrosospira multiformis; 8.749565106 8.799725807 9.091282477 8.444910687 8.098918737 8.402477419 8.262080516 7.861553469 8.169341131 8.190423884 8.344818186 8.519150703 219679499 cpnA Organic Remediation Other Hydrocarbons gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.285785437 8.39585018 7.756967637 7.996385169 7.891818891 8.573598946 7.545417831 7.848464731 7.933721378 8.160580787 148836401 ChrA Metal Resistance Chromium Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 8.594439044 8.771211346 9.124174309 7.88981819 8.006333824 7.918827363 6.842632035 6.973002319 7.785558155 7.955214912 8.183302611 8.242467024 218172482 pstB Stress Phosphate limitation Cyanothece sp. PCC 7424 8.15807327 7.803652905 7.375927178 7.178386848 6.82692404 6.883813093 7.562094398 7.286209359 7.04651034 7.363490281 86569733 TehB Metal Resistance Tellurium Frankia sp. CcI3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.279396244 8.395010694 8.428394671 8.332499782 8.286000468 8.133739585 8.354758096 8.368726957 8.453664835 8.414724476 8.367312964 8.355014564 57224216 rd Organic Remediation Chlorinated solvents Dehalococcoides ethenogenes 195 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides;species:Dehalococcoides ethenogenes; 8.408032926 8.537410858 8.357413725 8.403093721 8.174036176 8.417843375 8.565240087 8.125647969 8.402396546 8.304480781 8.408024514 226360048 AceB Carbon cycling Carbon degradation others Rhodococcus opacus B4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 8.344867403 8.324995152 8.306465256 7.690147111 7.875322318 7.810941901 8.257728355 7.761231761 7.868616837 7.991700406 7.71938409 91790953 nbaC Organic Remediation Aromatics Nitoaromatics Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 8.138295401 8.208871548 8.553335597 7.723492444 7.476367155 7.786816859 7.870290495 7.473006522 7.246847991 7.309311798 7.425839763 7.925576246 49650790 groEL Stress Heat shock Yarrowia lipolytica superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Dipodascaceae;genus:Yarrowia; 8.366625964 8.229803338 8.269570224 8.232617848 7.906467246 8.40861487 7.897198372 7.851056478 7.650050942 7.906916968 7.639841543 111021049 pcc Carbon cycling Carbon fixation Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 9.31139216 9.064777928 9.167635281 9.288130628 9.367269959 9.157321771 9.355557245 9.323033102 9.081219405 9.263953421 9.254617337 9.229066779 iegHydrogenase21 hydrogenase Energy process Energy process 8.582447102 8.480703218 8.409303727 8.422562471 8.668164588 8.491159367 8.829260682 8.649814242 8.601687474 8.14534329 8.588873493 8.697881862 209520863 proV Stress Osmotic stress Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.287912773 8.123796797 7.90111907 7.755657977 7.742489263 7.801663584 7.972170518 7.94143015 8.072819625 7.734025014 7.858764306 187718162 sigma_24 Stress Sigma factors Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8.459822601 8.076136816 8.31025689 8.553642742 8.435683006 8.204687026 8.160553644 8.6533058 8.43910366 8.387150502 8.218503875 8.348126271 167573108 MFS_antibiotic Antibiotic resistance transporter Burkholderia oklahomensis C6786 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia oklahomensis; 8.638049211 8.53137381 8.666537346 9.14959414 9.093889464 9.135461587 8.965499158 9.23238979 8.789157659 9.325739362 9.29680619 8.618088321 121998209 sigma_38 Stress Sigma factors Halorhodospira halophila SL1 8.383337265 8.624242537 8.555743538 8.494563717 8.683098026 8.686384648 9.026874574 8.886906708 8.690589716 8.816352522 8.998988446 8.905936222 77458206 cytochrome Energy process Energy process Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.895913114 8.880777483 8.658648177 8.033645597 8.022487633 8.335113103 8.440444433 7.856811237 8.950215355 8.099253045 7.826646145 8.152672247 198283059 trzE Organic Remediation Herbicides related compound Acidithiobacillus ferrooxidans ATCC 53993 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 8.565882464 8.59600741 8.576691739 8.322069647 8.316734576 8.360153398 8.248177678 8.431700991 8.270132087 8.119605129 8.195480581 8.579228205 183176426 mer Metal Resistance Mercury Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 9.03226513 8.948089714 8.57354656 8.527447178 8.430951589 8.613201361 8.955606719 8.688926832 8.876972221 8.661496638 8.802665591 8.871119095 153005121 cap virulence capsule Anaeromyxobacter sp. Fw109-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 9.627587506 9.652366842 9.777884428 9.513253775 9.393417817 9.187236214 9.251489565 9.435423329 9.43595665 9.733243848 9.818655191 9.797458246 240139145 sox Sulphur Sulphur oxidation Methylobacterium extorquens AM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 9.263279615 9.092858964 9.124960785 8.874820596 8.724960256 8.607144088 8.747780583 8.948492171 8.931761775 8.765461399 8.657213272 8.758037946 152026929 ahpC Stress Oxygen stress Anaeromyxobacter sp. Fw109-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 9.047688872 9.070870908 9.169793889 8.535758071 8.442473498 8.396498858 8.947078268 8.770289728 8.946002169 8.483290282 8.739862446 8.370340545 95928799 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Desulfuromonas acetoxidans DSM 684 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Desulfuromonadaceae;genus:Desulfuromonas;species:Desulfuromonas acetoxidans; 8.577196439 8.640034574 8.294459584 8.233347991 7.950467691 8.330876196 8.299376616 8.19574379 8.347448547 8.179872395 7.841795723 282947619 pap virulence adhesin Citrobacter rodentium ICC168 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 8.851546465 8.395552613 8.481489801 8.298736525 8.051970463 8.254007034 8.194060654 8.35571925 8.08636385 8.180135892 8.106006133 8.267571618 206688121 CopA Metal Resistance Copper Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 9.354326166 9.301360965 8.66319954 8.655885366 9.24964327 9.615131634 9.007045847 8.617864236 8.84430936 9.035899812 8.630950624 90954635 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9.400055095 9.589570638 9.347865991 8.727895135 9.109321116 9.284650123 9.551132431 9.380448058 9.373909033 9.315812197 9.309664956 9.663946297 154253804 CadA Metal Resistance Cadmium Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 8.835853734 8.824492523 8.879141079 8.464420995 8.382206635 8.293105634 8.115467738 8.155150497 8.170960512 8.358152264 8.144648757 8.520187684 73538235 benD Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.010647039 7.939545817 7.106785102 7.221796408 7.56018381 6.923110841 7.395445085 7.268824397 7.505009348 7.410921538 118729447 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.285218061 8.65558697 8.309739295 8.519683553 8.638753326 8.470496073 8.615657352 9.016284855 8.399420164 8.65774377 8.513869949 8.751236559 192809951 ChrA Metal Resistance Chromium Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.179240407 8.152499733 7.337793531 7.398578521 7.234864011 7.787661615 7.236873766 7.163169462 7.087683692 7.640801128 192292049 merP Metal Resistance Mercury Rhodopseudomonas palustris TIE-1 8.745023756 9.047458554 8.456936584 8.166714252 8.21902464 8.329554905 8.759666632 8.206534991 8.468150716 8.410188064 83859991 ZntA Metal Resistance Zinc Oceanicaulis alexandrii HTCC2633 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis;species:Oceanicaulis alexandrii; 8.403195412 8.29858569 8.008018541 7.963487299 7.547745764 7.352313025 7.891368231 8.160431552 7.533999677 7.740979247 7.689888251 41349629 gyrB other category gyrB Pseudomonas stutzeri CLN100 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 8.34236909 8.312934845 8.394118701 7.751863884 7.850184654 7.8458051 7.875982432 8.046740551 8.091613606 7.614950911 7.757059812 7.813944655 240102890 pstB Stress Phosphate limitation Thermococcus gammatolerans EJ3 9.706266082 9.555430005 9.789700228 8.891798579 8.275814268 9.0294997 8.999997755 8.379730868 9.181573659 9.031339328 9.30404679 9.109802234 146303719 thioredoxin Bioleaching Sulphur Metallosphaera sedula DSM 5348 9.074300721 8.92378056 8.959908062 8.431930373 8.186737815 8.38443737 8.281577006 8.232714624 8.29139824 8.271133255 8.153036927 8.509334517 73749295 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. CBDB1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 8.240200131 8.308649199 8.173859137 7.859812721 7.911242497 7.936839601 7.887503959 7.861690249 8.023847758 8.065861174 7.855173454 7.989671512 109290332 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.28737639 8.191832853 8.547102144 7.659595145 7.686311022 7.795575234 7.624491344 6.885183904 7.901743343 7.205117488 7.37887777 7.767762915 126035091 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 8.443654785 8.350493546 8.277555058 7.695482768 7.900205207 7.961089281 7.054633431 8.24844947 7.492288516 7.646206635 7.394821255 134268267 alkH Organic Remediation Other Hydrocarbons Geobacillus thermodenitrificans NG80-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermodenitrificans; 8.974977484 9.281360457 9.219183535 9.021969404 8.963796299 8.891121233 8.935971372 8.998139739 8.852734432 8.953454811 8.964281909 8.767339491 50919564 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.234765839 8.211239462 8.259978308 7.867966128 7.848363608 7.81460879 7.715220961 7.728395258 8.273719451 7.769861243 7.733783246 7.853146224 90440222 AceA Carbon cycling Carbon degradation others Vibrio angustum S14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium angustum; 9.053233572 9.044173017 9.123099223 9.016997885 8.971967411 9.353758283 9.057261315 9.663978024 8.835159013 9.699092747 9.61489901 8.97739629 8517645 sox Sulphur Sulphur oxidation Paracoccus denitrificans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 8.47953631 8.287859172 8.283835301 7.689262728 7.693365307 8.094509751 8.033673677 8.079322907 7.804895385 7.751409294 7.752423745 225387892 glnA Stress Nitrogen limitation Clostridium asparagiforme DSM 15981 8.344191789 8.553118582 8.757954004 7.962676069 7.887034052 8.139017582 8.176614619 8.164332155 8.298397733 8.247605063 8.193404796 8.256447552 206566527 ArsC Metal Resistance Arsenic Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 8.223585634 8.316938106 8.217400279 7.642681317 7.582090087 8.045705099 8.288566014 7.718747158 8.251262567 7.624898988 7.874202367 8.311066597 126319242 CopA Metal Resistance Copper Pseudomonas putida GB-1 7.903520919 8.133700334 7.209460177 6.962916268 7.264215091 7.391501062 6.606960612 7.906045528 7.117753642 7.424394587 77799789 benD Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia gladioli superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.815110207 9.152382566 9.134016642 8.771940574 8.478969192 8.636179931 8.775009083 8.560464226 9.016358934 9.157261633 9.092079098 8.930120139 209549502 amyA Carbon cycling Carbon degradation Starch Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.069384341 8.087114077 8.262237645 7.62140385 7.419066963 8.194933552 7.469681891 7.581271928 7.346797808 7.656866321 241764667 ahpC Stress Oxygen stress Acidovorax delafieldii 2AN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax delafieldii; 8.691657381 8.654285907 8.671788318 8.772926974 8.730550968 8.381359355 8.522450622 8.830714762 8.742381987 8.870943878 8.709367757 8.862611875 182678027 ureC Nitrogen Ammonification Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 7.311901811 7.562264538 7.587808435 7.423312612 7.668995204 7.694387208 7.500693406 7.459594641 7.703119908 221737432 nmoA Organic Remediation Aromatics Nitoaromatics Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 7.996105539 8.029469203 7.712616198 7.539215522 7.562188215 7.958825056 7.613281248 7.418188814 7.364535125 71275353 glnA Stress Nitrogen limitation Xylella fastidiosa Dixon 8.89620502 8.887509167 8.984857532 8.378290419 8.456197579 8.312163037 8.120421785 8.073117903 8.314784474 8.283521073 8.183830727 8.419641797 158318237 glnA Stress Nitrogen limitation Frankia sp. EAN1pec 9.090856045 9.180511428 8.894503139 8.703770042 8.461774295 8.859321351 9.099554325 8.725379267 8.941456707 8.734257668 8.923346708 8.400500722 148976268 SMR_antibiotics Antibiotic resistance transporter Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 7.41160611 7.48188829 7.785328941 7.327448624 7.251094201 7.289528369 7.727703623 261376676 cap virulence capsule Geobacillus sp. Y412MC61 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.82887711 8.738762605 8.777455355 8.441258813 8.411361028 8.419219885 8.401300075 8.372116782 8.359645455 8.420127129 8.488664736 8.701648524 120594353 bphA Organic Remediation Aromatics Polycyclic aromatics Polaromonas naphthalenivorans CJ2 8.966728648 9.069722555 9.035474445 8.577760576 8.027347962 8.259056425 8.021308616 8.072102299 8.58040142 8.134073387 7.83857052 8.447927209 28853959 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 9.217755309 9.450004255 9.300203435 8.60893012 8.97584273 9.164372763 9.639128687 9.038691011 9.485449144 9.052352184 8.772457142 9.180986274 149186135 linC Organic Remediation Pesticides related compound Erythrobacter sp. SD-21 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 8.672590226 9.078786018 8.742157399 9.082326938 8.888225799 8.681938391 9.315659752 9.078146232 9.103917591 8.882538198 8.803132156 8.860420308 83645847 exochitinase Carbon cycling Carbon degradation Chitin Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 8.666998305 8.374516672 8.895108207 8.867786434 9.029035956 8.428924343 8.88453872 8.923426761 9.202564846 87199051 AceA Carbon cycling Carbon degradation others Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 8.945457985 8.906882969 8.99535009 8.915604104 9.064916102 9.100968062 8.806959357 9.114321011 8.844922192 8.714027404 8.942673049 8.839118968 76667400 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 9.065916101 8.810703227 9.014315945 8.787522471 8.940307129 9.112496981 8.976096301 9.25973593 8.803134174 9.212918449 9.262608157 9.20762335 146401347 oxyR Stress Oxygen stress Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 8.296928328 8.546099982 8.196759224 8.344301886 8.33520086 8.320131037 8.249084906 8.743019887 8.357318661 8.572434346 8.300696845 8.358801834 218459201 fnr Stress Oxygen stress Rhizobium etli Kim 5 9.50889804 9.726974009 9.881218991 9.186908281 9.103446254 9.087635691 8.849194334 8.528421737 9.080306017 8.904496801 9.030187324 9.249883085 260456101 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 9.9842263 9.797105976 9.638774292 9.510851949 9.483036662 9.405276718 9.671586543 9.556427668 9.590900109 9.640184939 9.840843292 9.667295452 162954939 ppx Phosphorus Phosphorus utilization Renibacterium salmoninarum ATCC 33209 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Renibacterium;species:Renibacterium salmoninarum; 8.602291694 8.487902189 8.599643932 8.466079116 8.479081541 8.271509591 8.281384968 8.408095463 8.114852962 8.362592671 8.357951218 8.537333197 119944886 hly virulence hemolysin Psychromonas ingrahamii 37 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas;species:Psychromonas ingrahamii; 8.900514138 8.17136237 8.609222698 8.177660933 7.900176725 7.942811231 8.110090179 7.969930531 7.873921932 7.849154328 8.122277915 154244258 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.616814249 8.406344888 8.854878508 7.960763707 8.004951842 7.931403216 8.102678945 7.608984184 7.779673494 7.96791591 8.003738706 92116257 pstB Stress Phosphate limitation Nitrobacter hamburgensis X14 9.497904646 9.677640649 9.488316058 10.06062615 10.09403653 9.886724012 9.751444242 10.20090154 9.661753187 9.916583117 9.890271181 9.422404695 258594067 nrfA Nitrogen Dissimilatory N reduction Desulfurivibrio alkaliphilus AHT2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfurivibrio;species:Desulfurivibrio alkaliphilus; 8.275234617 8.48701822 8.664973028 8.035859855 7.724019459 8.012055905 7.941451662 7.391583333 8.283819791 7.558132757 7.473864658 7.329985613 119857019 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 9.170733078 9.107321 9.239948058 8.566582687 8.460595658 8.455469303 8.487239422 8.504688608 8.260107114 8.357115288 8.31814257 8.65045325 256799451 katE Stress Oxygen stress Streptomyces viridochromogenes DSM 40736 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 8.223066583 8.321500779 8.458372476 8.0389009 7.819764561 7.529795442 7.83816965 8.308346567 8.41970021 8.204243638 7.971098281 8.253929201 148556166 vanA Carbon cycling Carbon degradation Others Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 9.84620687 9.684447391 9.812801391 9.002895487 9.045917481 8.739751943 8.984917134 8.693546238 9.3408352 9.09022833 9.093839575 9.09043838 74038476 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.614054308 9.324248501 9.495493487 9.076594747 8.971444018 8.802147835 8.719999318 9.15420756 8.953464082 8.998267369 9.031255248 9.091428689 78093540 narG Nitrogen Denitrification uncultured bacterium 8.629038957 8.572992783 8.103140923 8.046861962 8.404292065 8.006321247 8.601764148 8.070661926 8.143611437 8.035005349 111036262 cbdA Organic Remediation Aromatics Chlorinated aromatics Pseudomonas putida 8.908329792 8.800498039 8.907165152 8.817688927 8.778199852 8.509146346 8.622188541 8.95436291 8.781804047 8.898850743 8.785376053 8.895232026 118648765 nitA Organic Remediation Aromatics Other aromatics Burkholderia cenocepacia MC0-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 10.50156772 9.842062702 10.1676565 9.875559174 9.602141822 9.22239065 9.930554974 9.919264424 9.834459222 9.880670064 9.774096562 9.650966793 146410739 Catechol Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.409238622 8.593500219 8.284106552 7.856431459 7.700237574 7.74526683 7.83598906 8.629759526 7.831989216 7.796224537 7.798120682 126202188 xylC Organic Remediation Aromatics BTEX and related aromatics Pseudomonas stutzeri 8.578949725 8.371429894 8.669761373 7.97090043 7.898802452 7.840243822 7.643867793 7.587435985 7.890213285 7.693034771 7.974360553 7.964354792 114737493 CopA Metal Resistance Copper Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 8.908180276 8.694016362 8.664538855 8.860918721 8.553990435 8.227620075 8.778318326 8.954040133 8.662437347 8.810764562 8.883505216 8.199146508 209401830 narG Nitrogen Denitrification uncultured bacterium 8.426741698 8.393666118 8.553773113 8.422260664 8.540323936 8.21057951 8.460886892 8.612233739 8.475229279 8.300466662 8.16336868 8.149570463 83265614 mmoX Carbon cycling Methane Methane oxidation Methylomicrobium buryatense superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomicrobium; 8.635723605 8.881317501 8.735826556 8.21666976 8.155353721 8.596984374 8.964904877 8.482425545 8.754225444 8.13541993 8.02364963 8.380076714 51891899 pstB Stress Phosphate limitation Symbiobacterium thermophilum IAM 14863 9.119636774 9.175343317 9.026579538 8.955525601 8.788936079 8.767102827 8.942153293 8.958184887 8.862770061 8.777015043 8.704380985 9.02474838 89113927 glx Carbon cycling Carbon degradation Lignin Phanerochaete chrysosporium superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 8.578734444 8.573609002 8.275093377 7.922205031 7.690480622 7.891537179 8.159420928 7.930185496 8.122594637 171060340 nagI Organic Remediation Aromatics Aromatic carboxylic acid Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 8.474835743 8.802330344 8.85055525 8.059032444 8.215332614 8.522921281 8.497086037 7.96726334 8.898918133 8.0917623 8.0250266 8.289414079 21221609 chnB Organic Remediation Other Hydrocarbons Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.618313951 8.642839167 8.615538015 8.836426775 8.623811377 8.476444858 8.801069887 8.733829273 8.814143227 8.739537177 8.645393275 8.641202954 110632102 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.373197545 9.362335942 9.190399828 8.740772686 9.09646836 9.098927499 9.471202047 8.477704697 9.232826991 8.654234435 9.002813252 8.531851485 56962348 xylA Carbon cycling Carbon degradation Hemicellulose Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 8.458843786 8.444185954 7.623454687 8.473109444 8.217890634 7.549084176 8.62520401 7.907968414 8.318305121 7.852183564 8.104484406 221066330 ChrA Metal Resistance Chromium Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 11.23943193 10.95427356 11.06717754 10.58572851 10.93443117 10.93864905 10.95215992 10.26298034 11.33347391 10.58691605 10.73242006 10.81611221 170136768 cap virulence capsule Burkholderia ambifaria IOP40-10 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 8.9617526 8.487693474 8.547166198 8.224322239 8.649913102 8.303621532 8.442881192 8.315271958 8.505811085 8.410504783 8.774995045 8.298577847 182678157 nmoA Organic Remediation Aromatics Nitoaromatics Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 9.566912056 9.674228326 10.00798223 8.9728381 9.045249388 9.045465133 8.887115846 8.81340162 9.073065533 9.149647904 9.306444003 9.284222689 119859016 nitro Organic Remediation Others Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.267011319 8.108510294 8.271181942 7.890248127 8.152506297 8.214027988 7.916578503 7.993675017 8.084737609 8.061221466 8.232853961 7.945755107 115372250 mhpA Organic Remediation Aromatics Aromatic carboxylic acid Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 9.4306461 9.421516654 9.520272377 8.89661262 8.704553801 8.689182196 8.712903486 8.679766858 8.562752767 8.746138388 8.620737995 8.986707632 46308000 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.873547439 8.577051523 8.859101088 8.355195502 8.024917144 7.835622921 7.985089209 7.834936149 7.7949458 8.012819561 7.687978854 7.950751728 148501343 mauAB Organic Remediation Herbicides related compound Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 10.894383 11.05157367 10.84394127 10.44371046 10.29037671 10.15074348 10.35765929 10.00283135 10.49546631 10.2492582 10.30818803 10.17566135 76577472 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.765243999 8.76557192 9.505752699 8.733548616 8.39889996 8.141782012 8.951662185 8.666852764 8.525499345 8.516928115 8.433630907 8.179429272 253779412 phoA Stress Phosphate limitation Photorhabdus asymbiotica superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus; 9.580903159 9.592912924 9.58598518 8.88999431 8.686152106 8.889961826 8.823593209 8.654016728 8.753039082 8.704096741 8.876951701 8.924815013 187478307 silC Metal Resistance Silver Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 8.11849494 7.981868529 8.230539824 8.003917897 8.137545964 7.886047869 7.587319888 8.132536785 8.007229312 7.981979035 7.911168425 8.197074987 74422044 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nitrobacter winogradskyi Nb-255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 9.51847025 9.165141915 9.736623926 8.828030796 8.632805587 8.898852074 8.154162733 8.739053321 9.137782546 9.242490159 8.950489957 229829028 groEL Stress Heat shock Shuttleworthia satelles DSM 14600 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Shuttleworthia;species:Shuttleworthia satelles; 9.804562572 9.877312472 9.790841156 9.193194801 9.200972844 9.021576155 9.50491897 9.873752394 9.225798193 9.503685247 9.622831607 9.731713182 172072525 nmoA Organic Remediation Aromatics Nitoaromatics Micrococcus luteus NCTC 2665 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus;species:Micrococcus luteus; 8.549933242 8.463547339 7.940350204 8.077664972 8.085292319 8.049626634 7.914646815 8.330688292 8.034784239 7.83861877 8.220279069 221183584 akbF Organic Remediation Aromatics BTEX and related aromatics Burkholderia multivorans CGD2M 8.111577673 8.082042522 8.188657087 8.602981358 7.752502425 7.971573843 7.601693456 8.10880285 7.991081003 7.844181496 7.952613801 7.9998323 118465384 CDH Carbon cycling Carbon degradation Cellulose Mycobacterium avium 104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 8.194107193 8.3470793 8.400711757 8.122282385 7.911571052 7.918981036 7.857003124 8.113834554 8.054732172 8.153843794 7.975085972 8.235504565 119355986 narI Stress Oxygen limitation Chlorobium phaeobacteroides DSM 266 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 8.765490419 8.547687252 8.506897504 7.89133328 8.100558403 7.969461883 121552068 pimF Organic Remediation Aromatics Aromatic carboxylic acid Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 8.316071688 8.515940574 8.683571271 8.830591273 8.315679498 8.011657262 8.041844603 8.297071272 8.176266095 8.774177825 145570144 nitro Organic Remediation Others Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 8.057227021 8.376354095 8.274720558 7.54140261 7.942019653 8.276159125 8.478440804 7.876685261 7.87018356 8.187058593 8.440747298 218461097 pcc Carbon cycling Carbon fixation Rhizobium etli Kim 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 10.50873149 10.4496618 10.43263731 9.827204323 9.77035844 9.732665839 10.47726144 10.36947375 10.69632652 9.81094739 10.03072375 10.32538332 163794076 atzC Organic Remediation Herbicides related compound alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 8.703208788 8.480310692 8.252094831 8.207130772 8.231103839 8.407739692 8.494768776 8.359300789 8.516005917 8.79212887 8.72647206 8.713564246 126320191 nmoA Organic Remediation Aromatics Nitoaromatics Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.220332735 8.14943007 7.581158454 7.838869942 8.011486821 8.047089446 7.831428054 8.045856776 7.703214686 7.668218843 7.647486517 86751345 iro virulence Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.935000253 9.166339394 8.726388367 9.189014996 9.149795605 9.096293266 9.088785366 9.580932629 9.099382578 9.272678197 9.183990621 8.960977058 227076546 pcc Carbon cycling Carbon fixation Corynebacterium accolens ATCC 49725 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium accolens; 10.04706934 9.929864294 9.893221607 9.912034311 10.03721944 9.953470631 9.845571952 10.22915234 9.85010939 10.01419399 9.829553535 10.00947832 237785294 glnA Stress Nitrogen limitation Corynebacterium kroppenstedtii DSM 44385 8.587398062 8.516332868 8.456954083 7.826284656 7.755478265 7.74414543 8.173732512 7.976502466 8.489533392 7.654287088 8.056974711 7.874278058 21223143 linC Organic Remediation Pesticides related compound Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.537279916 8.851177233 8.835683036 8.928981035 9.022427081 8.629752594 8.781382676 8.705776543 78698435 CODH Carbon cycling Carbon fixation Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.167949313 7.851178029 7.741784119 8.127057736 7.835536099 8.118574648 7.785247713 7.79896647 7.649308716 187250513 obgE Stress Radiation stress Elusimicrobium minutum Pei191 superkingdom:Bacteria;phylum:Elusimicrobia;class:Elusimicrobia;order:Elusimicrobiales;family:Elusimicrobiaceae;genus:Elusimicrobium;species:Elusimicrobium minutum; 8.846378848 8.944094442 8.93970884 8.372274631 8.454960431 8.330639907 8.523362923 8.589232188 8.82721431 8.775021047 8.557254406 8.570536469 171057939 fnr Stress Oxygen stress Leptothrix cholodnii SP-6 8.985843111 9.017754927 9.229890736 8.91966222 9.327865831 9.337769515 9.476807861 9.457352612 9.011504726 9.276550913 9.163622582 126360004 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.42536221 8.453979203 8.336413076 7.726192829 7.717118813 7.676205018 8.47818356 8.180977188 9.094214057 7.946529088 7.873630765 7.832960216 189425885 dnaK Stress Heat shock Geobacter lovleyi SZ 8.710888309 8.299787239 8.407427346 8.549500857 8.308155386 8.071684729 8.387003868 8.312299618 8.568277298 8.407871364 8.276037727 8.241064312 41398632 NiR Nitrogen Assimilatory N reduction Mycobacterium avium subsp. paratuberculosis K-10 8.076917488 7.944563767 8.508504824 7.592444919 7.563872624 7.751215904 7.797275305 7.652912672 8.127496805 7.698865247 7.543337126 7.757896698 56419238 amyA Carbon cycling Carbon degradation Starch Geobacillus kaustophilus HTA426 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus kaustophilus; 9.526269257 9.599708398 9.461858112 9.981461433 10.0215007 9.886012828 9.936877921 10.10346517 9.841062439 10.25657061 10.13168927 9.693257697 254562658 fnr Stress Oxygen stress Methylobacterium extorquens DM4 8.266520951 7.763432183 7.792745336 7.411224583 8.050512286 7.914247457 7.927656774 7.551572383 82523664 mcrA Carbon cycling Methane Methane production uncultured archaeon superkingdom:Archaea; 9.960590421 9.899020066 9.97339842 9.110968191 9.092233638 8.867856121 9.347197643 9.204908512 9.528918303 9.301398468 9.361143408 9.138561189 229765280 fnr Stress Oxygen stress Streptosporangium roseum DSM 43021 8.859057446 8.960804805 8.710142253 8.764737638 8.992295614 9.054816865 8.919586063 8.781380423 8.786355865 8.698234609 9.287694733 8.676638738 67904704 katE Stress Oxygen stress Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 8.43343913 8.664711496 8.358865963 8.180140646 8.953011693 8.64674459 9.022698545 8.626394023 256560493 pstB Stress Phosphate limitation Brachybacterium faecium DSM 4810 8.652435444 8.765650991 8.683354727 8.399896722 8.319418478 8.280573669 8.543512429 8.106187436 8.257212682 8.275527805 8.278546067 261332526 Tet Antibiotic resistance other Trypanosoma brucei gambiense DAL972 superkingdom:Eukaryota;order:Kinetoplastida;family:Trypanosomatidae;genus:Trypanosoma;species:Trypanosoma brucei; 8.764085084 8.325461749 8.84699656 8.228580618 8.110123112 8.062852596 7.898797039 7.955988419 7.946323769 8.085261561 7.976302118 8.25374671 119116128 bphC Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium superkingdom:Bacteria; 8.486285473 8.483306704 8.455042237 8.136261566 8.092965293 7.849900518 7.818339069 8.057464917 8.505702034 8.177726326 7.956125999 8.072797243 151592184 ureC Nitrogen Ammonification Methylobacterium extorquens PA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 9.692937647 9.402608438 9.764719715 8.533478505 8.740973273 8.811689832 8.694842934 8.596389496 8.976848316 8.89788609 8.813851476 8.78899724 228556338 SMR_antibiotics Antibiotic resistance transporter Citrobacter youngae ATCC 29220 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter youngae; 9.056784185 9.182037768 8.481202066 8.628670943 8.213220625 8.526517194 8.546587578 219675063 alkK Organic Remediation Others gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 9.098784888 8.721900655 8.686169815 8.477276316 8.569455896 8.363920779 8.400523015 8.429731391 8.602004824 8.395732628 8.43233093 8.393662569 150256431 CadA Metal Resistance Cadmium Victivallis vadensis ATCC BAA-548 8.798347742 8.586817066 8.544777606 8.300634537 8.263832995 8.267013452 8.119578099 8.101434965 8.249511033 8.258059071 8.205544673 8.388093651 167594193 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 8.465168164 8.486656059 8.460304184 7.787506669 7.522846874 7.717547591 7.297216234 7.477740195 7.927744053 7.50899556 7.633687202 7.599149779 167590139 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Burkholderia ubonensis Bu superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ubonensis; 9.473159483 9.231714109 8.983973424 8.507486196 8.869608645 8.755712229 9.012924296 8.256328818 9.172425629 8.53441705 8.736960416 8.728252613 251782406 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus dysgalactiae; 8.585917571 8.192851991 7.758243263 7.516816636 7.612669332 6.840586608 7.668691994 7.284208127 7.265311668 7.479135014 209546959 BADH Organic Remediation Aromatics Other aromatics Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.196220882 8.017441793 8.272468237 8.172746567 8.287345228 7.979261221 7.840982927 8.277726629 8.183105499 8.167749007 7.908912089 8.207458044 119695411 TerC Metal Resistance Tellurium Mycobacterium sp. KMS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 9.111529427 9.239855476 9.162278871 8.439033038 8.49735617 8.842854742 9.100200807 8.506991417 9.295413876 8.468039158 8.385801672 8.687685873 254430241 arsM Metal Resistance Arsenic Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 8.070915238 7.91523251 7.843918542 8.061807446 7.798224206 7.283343597 7.480328488 7.865232188 7.903838012 7.838384826 7.834033494 266629923 fnr Stress Oxygen stress Caulobacter segnis ATCC 21756 8.323842187 8.358942943 8.791693179 7.680881389 7.444147785 7.934746457 7.784878102 7.503904622 8.116184854 7.708203622 7.672635193 7.959668816 159877229 amyA Carbon cycling Carbon degradation Starch Flavobacteriales bacterium ALC-1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales; 9.067479354 8.739152317 8.933912407 8.305470899 8.041749512 8.194105726 8.050041669 7.998140072 7.627257474 7.991911148 8.260181907 154243708 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 9.071066028 9.017439495 8.674295924 8.664494378 8.525964453 8.510652635 8.6517019 8.601785481 8.43538332 8.89362569 198257738 mannanase Carbon cycling Carbon degradation Hemicellulose Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 8.622131646 8.245476778 8.358679202 7.549361838 7.363110461 7.453346862 7.570881856 6.947921342 10.08536674 7.186069619 7.234677608 7.24553707 195537609 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 9.531625904 9.605541411 9.608944801 8.793179428 8.837983108 8.54162825 148261255 nitrogen_fixation_genes Bioleaching Nitrogen Acidiphilium cryptum JF-5 9.407596179 9.197001546 9.471796548 8.488014771 8.608541445 8.680968436 9.24839599 8.487701046 9.308571196 8.464184721 8.390447657 8.581959592 218989014 phenol_oxidase Carbon cycling Carbon degradation Lignin Cystoderma carcharias superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Agaricaceae;genus:Cystoderma; 8.756550073 8.216913811 8.289517978 8.55782276 8.48475638 7.974232667 8.386625272 8.349702897 8.283539368 8.077638946 8.000696299 8.061322764 85693864 mer Metal Resistance Mercury Idiomarina baltica OS145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina baltica; 8.11709407 8.178395637 7.650444176 7.653696831 7.77779805 7.616321464 7.690797747 7.580037885 7.462748624 7.613963403 168704291 sigma_24 Stress Sigma factors Gemmata obscuriglobus UQM 2246 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata;species:Gemmata obscuriglobus; 8.71436258 8.744350243 8.844968774 8.644658317 8.780133261 8.698863636 206568156 ZitB Metal Resistance Zinc Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 8.82806162 8.692480901 8.897880101 8.292389788 8.368636842 8.377182641 8.170850998 8.203008132 8.303037457 8.333131962 8.776477956 8.377987423 193788998 bphC Organic Remediation Aromatics Polycyclic aromatics Achromobacter sp. BP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter; 7.446098007 7.517944604 7.607823931 7.332467285 7.489768021 7.505742353 7.486080128 7.585817214 7.594259902 91783762 ChrA Metal Resistance Chromium Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 9.237247225 8.801730676 9.10509277 8.843145479 8.926321777 8.730323211 8.958239801 9.283853499 8.888164254 9.105556411 8.990823613 9.107650223 160361326 alkH Organic Remediation Other Hydrocarbons Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 9.568971665 9.711005318 9.567251576 9.637614212 9.544533075 9.324321108 9.809864236 9.68984447 9.574187482 9.813471854 9.792624609 9.430168214 227015885 vanA Carbon cycling Carbon degradation Others Pseudomonas nitroreducens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.586433399 8.683778997 8.33416688 8.135602452 7.915099907 8.0069276 8.227483969 7.785133014 7.626003361 7.825322435 7.776066861 94266488 ZntA Metal Resistance Zinc delta proteobacterium MLMS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 8.768903128 8.705191904 8.771108013 8.744915221 8.527823766 8.363810016 8.266488056 8.514175217 8.360142769 8.483334657 8.227713047 8.434706484 32307917 narG Nitrogen Denitrification uncultured bacterium 9.253669015 9.289897118 9.183093747 8.406404151 8.478201048 8.441441592 8.52050114 8.324958027 8.811185421 8.435867512 8.659774555 8.313930547 158110300 pcc Carbon cycling Carbon fixation Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 9.082880246 9.442551733 9.283900841 9.284165889 9.626963167 9.60522134 9.746204199 9.812531861 9.699921619 10.04282734 9.949087364 9.764101434 257483044 AceB Carbon cycling Carbon degradation others Pseudomonas syringae pv. tabaci ATCC 11528 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas amygdali; 8.798282166 8.297997017 8.475994654 7.704788673 8.334319412 8.564053593 7.794630227 8.731834661 7.972252516 8.295424611 7.949197066 222525449 sigma_70 Stress Sigma factors Chloroflexus sp. Y-400-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus; 9.912178485 9.765229921 9.519868398 10.01111054 10.16698796 9.705667858 10.24947787 10.04222532 9.88795871 9.86609433 9.994548312 9.434043518 163751407 cytochrome Energy process Energy process Shewanella benthica KT99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella benthica; 8.982417822 9.058191422 8.920273607 8.540998735 8.560438195 8.42482734 8.340047401 8.432897228 8.460555652 8.584828611 8.458045393 8.494727998 119376757 B_lactamase_C Antibiotic resistance Beta-lactamases Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.879610532 8.725585572 8.667304381 8.143826654 8.271822303 8.240969559 8.537917427 8.252993957 8.579022264 8.455139624 8.359673265 8.266551706 222354274 hao Nitrogen Nitrification uncultured bacterium superkingdom:Bacteria; 9.038702247 9.253660631 9.349227466 8.232246234 8.113761509 8.713643456 8.744010149 8.546954148 8.787633459 8.64385661 8.546083649 8.969042078 198268361 gyrB other category gyrB Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 8.834969228 8.571729782 9.07173833 8.614543136 8.281406065 8.851151798 8.854085329 8.958365209 8.549925612 8.356039285 8.66920182 84500768 xylA Carbon cycling Carbon degradation Hemicellulose Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 8.771386151 8.698879145 9.102160271 8.971375815 8.766047708 8.501737342 8.721809958 9.109000374 8.715305685 9.127035491 8.673224303 9.104806347 145322328 cap virulence capsule Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 8.27016996 8.098655289 8.158897923 7.835896504 7.744102487 7.889739586 7.993392458 7.779605583 7.633501437 7.633224087 7.710440819 109452555 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9.260373641 9.143500907 9.184817385 8.800986454 8.956330687 8.931439963 9.061908664 9.571806535 8.970596753 9.388208508 9.193875543 9.370734914 116694335 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.92275445 9.114370216 8.782839672 8.82669122 8.8561087 8.810351739 8.824553973 9.139933031 8.814863015 9.08265194 9.038373935 8.864232283 254442050 amyA Carbon cycling Carbon degradation Starch Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 8.191475205 8.052223305 8.094193547 7.557074154 7.630431852 7.496373926 7.3882107 7.833649705 8.033230785 89901596 ChrA Metal Resistance Chromium Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 9.219035868 9.338142319 9.381348407 8.63120032 8.723484371 8.692041187 9.305128346 8.717797763 9.530835073 8.484792837 8.655893043 8.350779036 256690757 pstA Stress Phosphate limitation Halorhabdus utahensis DSM 12940 8.789613459 9.056088729 9.122013964 8.646122381 8.693021411 8.454711147 8.554884251 8.728472141 8.724745851 8.89547147 8.661219414 8.669668148 111150371 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 8.299807592 8.224942347 7.957214883 7.643032916 7.53981064 7.837139806 7.396757099 8.35561697 7.410637419 7.48298239 7.338086034 240170041 pstB Stress Phosphate limitation Mycobacterium kansasii ATCC 12478 9.263731315 9.368429798 9.408511209 8.933261813 8.857059802 8.925604729 8.852520087 8.986677807 8.923162174 9.008664357 9.090492391 9.08568332 189345925 aoxB Metal Resistance Arsenic Chlorobium limicola DSM 245 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium limicola; 7.996075659 8.076304798 7.361072099 7.483009468 6.973497625 6.684195781 7.310682467 7.285952096 7.843737269 119225856 Catechol Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 8.056701622 8.307491584 7.24837183 7.473860879 7.861615698 8.312492551 7.560711096 8.30410463 7.832898902 7.624383898 7.693424809 84667749 ahpC Stress Oxygen stress Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 9.000183458 9.129516069 8.485048486 8.096274937 8.965817145 8.674549374 8.818122062 8.503568746 8.796948703 8.77078626 8.763638211 8.727574611 255325506 obgE Stress Radiation stress Corynebacterium tuberculostearicum SK141 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium tuberculostearicum; 8.819321508 8.659216311 8.575789681 8.826078034 8.531480037 8.309199163 8.286973414 8.451519271 8.630928809 8.531517909 8.407920539 8.658916055 222087268 nagG Organic Remediation Aromatics Aromatic carboxylic acid Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.333983439 8.351286127 7.677384099 7.59245162 7.430099084 7.326347993 7.951018046 7.774035402 7.959968686 7.627311325 7.904014077 259039642 katE Stress Oxygen stress Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 8.145408801 8.174463625 8.544216803 7.997144477 7.784267105 8.322794426 8.281675736 8.171419254 8.214186706 7.772945324 83757783 cda Carbon cycling Carbon degradation Starch Salinibacter ruber DSM 13855 8.174735797 8.070016357 7.923158508 7.820721092 7.804733123 7.809143709 7.672895544 8.107936163 7.811091817 7.730949861 7.767474355 82740412 ZntA Metal Resistance Zinc Shewanella sp. W3-18-1 8.894712179 8.387069683 8.523470637 7.82841252 8.022599125 8.070855509 7.623582885 8.459685439 7.823826085 7.775463558 7.633222879 170735272 type_III_secretion virulence secretion Burkholderia cenocepacia MC0-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 8.340128494 8.302847631 8.640137932 7.764460895 7.598150516 7.871228323 7.261457185 7.188976068 7.882877673 7.226368323 7.485907559 7.838865759 148242895 alkK Organic Remediation Others Synechococcus sp. RCC307 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.566100529 9.103490119 9.119257253 7.607601099 7.4347814 7.702602802 7.647539839 7.389542175 8.31391455 7.976320648 7.703683159 7.676341129 120609111 AceB Carbon cycling Carbon degradation others Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 8.620993556 8.564428654 8.77727092 8.398403629 8.316626614 8.190938627 8.050813634 7.899221041 8.219183855 8.130050931 7.942469212 8.265873311 254672329 iro virulence Neisseria meningitidis serogroup W135 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria meningitidis; 9.126065369 9.046205353 8.961829589 9.215098935 9.167393355 8.989667408 8.939528367 9.318194063 9.129691768 9.119546445 9.092994912 254507447 pilin virulence pilin Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 9.135388896 9.176021834 8.612084179 8.55047001 8.517142048 8.35673 8.483180414 8.448178336 8.432869882 8.560123641 8.755941605 184201561 clpC Stress Protein stress Kocuria rhizophila DC2201 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 8.636803023 8.287009011 8.301237125 7.586929738 7.714400602 7.791619888 7.922475366 7.314650711 8.457310333 7.633538909 7.388871987 7.824242985 10863129 nifH Nitrogen Nitrogen fixation lactate SRB-Enrichment culture clone HBLac1 superkingdom:Bacteria; 10.38424686 10.15183625 10.38311143 9.434994634 9.558811584 9.415398175 9.947041128 9.829707569 9.960246228 9.500189869 9.382976089 9.69578896 167647574 ara Carbon cycling Carbon degradation Hemicellulose Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 9.408671623 9.461767196 9.525686873 9.131530662 9.126712584 9.035671495 8.81004478 9.007029045 8.911859535 9.069284418 9.132342705 9.22551758 251788267 pilin virulence pilin Dickeya zeae Ech1591 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 8.509212927 8.601965668 8.698112559 7.577858039 8.153844787 8.392603427 8.779550041 7.760846827 8.629037842 8.339149181 8.494074371 8.439340595 222524968 fnr Stress Oxygen stress Chloroflexus sp. Y-400-fl 8.309990232 8.598134546 8.789816933 8.850769445 8.775873401 8.438646488 8.406494639 9.271991077 8.97006497 8.803006757 9.021105196 17298108 bphA Organic Remediation Aromatics Polycyclic aromatics Bradyrhizobium sp. HW13 10.59475382 10.35695154 10.47149188 9.88404678 9.745980395 9.709431357 110622509 pstC Stress Phosphate limitation uncultured methanogenic archaeon RC-I superkingdom:Archaea;phylum:Euryarchaeota; 9.029567939 9.052451762 9.108135481 8.76693462 8.522389483 8.524467369 8.475454874 8.203405717 8.638752715 8.517647693 8.694803707 8.772500049 108805625 atzB Organic Remediation Herbicides related compound Rubrobacter xylanophilus DSM 9941 8.505401365 8.475461719 8.420015875 8.267193024 8.318810344 8.576121997 8.63264198 8.667343772 8.851951362 8.445575175 8.367814352 8.544415032 83944274 PobA Organic Remediation Aromatics Aromatic carboxylic acid Sulfitobacter sp. EE-36 8.354956558 8.306124012 8.028236747 8.049095323 7.868639157 8.205670035 8.15609332 8.230780609 7.900598461 8.304225937 58426136 sigma_24 Stress Sigma factors Xanthomonas oryzae pv. oryzae KACC10331 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 8.841270045 8.9497877 8.625928836 8.571176029 8.426601071 8.173041367 118668489 mer Metal Resistance Mercury Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.614488797 8.505624908 8.68311716 8.22463161 8.340016211 8.128573326 8.005771394 8.074749282 8.382804726 8.253134348 8.204903231 8.24328369 226837199 katE Stress Oxygen stress Acinetobacter sp. ATCC 27244 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 8.429757867 8.450467012 7.7647515 7.28298122 7.081451872 6.966168855 7.22318374 7.280187989 7.605229096 219860405 katE Stress Oxygen stress Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 8.286919277 8.190419316 8.224378686 7.853784972 7.660631752 8.143537839 8.2266825 7.861997885 8.357659262 7.63826158 7.715797692 7.657687429 149924163 glnA Stress Nitrogen limitation Plesiocystis pacifica SIR-1 8.601909677 8.363743763 8.909966991 8.119894531 8.245771236 7.979166162 7.506151239 7.428084532 8.121703397 7.884650346 7.894598593 8.023727258 121554511 phtB Organic Remediation Aromatics Aromatic carboxylic acid Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 8.919881895 8.938838471 8.940762584 7.732084762 7.773033847 7.903267773 8.319480831 7.94611996 7.737272167 7.621052664 7.866542201 167594305 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 8.748726135 8.520846749 8.548190404 8.16994947 8.138433326 8.096200573 8.039404054 7.943571696 8.049469562 7.71717449 8.1937016 8.148314786 119898357 MATE_antibiotic Antibiotic resistance transporter Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8.85678308 8.507107053 8.898781711 8.514289495 8.540254768 8.080259122 8.362320084 8.564537345 8.468215531 224589200 aoxB Metal Resistance Arsenic Hydrogenobacter sp. GV8-4AC-C1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenobacter; 8.983681398 8.631850476 9.262250111 8.479521746 8.335597927 7.601743113 8.093830068 8.255667554 8.063390202 8.116045344 8.354006397 77539313 mhqA Organic Remediation Aromatics Nitoaromatics Burkholderia sp. NF100 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 9.551210349 10.23131081 9.776126776 9.442745704 10.04859706 10.31306837 10.61252382 10.28124003 10.46613003 10.62998168 10.50266714 10.739671 21219061 linB Organic Remediation Pesticides related compound Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 9.883177046 9.495745225 9.33903803 9.432618811 9.053084109 8.933332328 9.345226001 9.147680043 9.16101286 9.241307102 9.313695677 9.130294925 89055171 nagG Organic Remediation Aromatics Aromatic carboxylic acid Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 8.877657804 8.800499742 8.909354121 8.487819461 8.311739163 8.15939794 8.578712228 8.295359955 8.469909607 8.218488875 8.499292554 46916888 MFS_antibiotic Antibiotic resistance transporter Photobacterium profundum SS9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 6.996154259 7.750988478 7.802063877 7.675112607 6.716948193 7.195652615 7.585755007 150004953 catB Organic Remediation Aromatics BTEX and related aromatics Bacteroides vulgatus ATCC 8482 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides vulgatus; 8.694835434 8.489487256 8.506772501 8.278278483 8.40413974 8.452373535 8.688432007 8.393403944 8.327327801 8.264301508 8.42788324 7.994325592 158108159 TerD Metal Resistance Tellurium Frankia sp. EAN1pec 8.75809018 8.859984946 9.106343 8.180141842 8.347031042 8.362003598 8.629453068 8.473360269 8.952984365 8.465681088 8.601783514 8.477649087 117618682 pilin virulence pilin Aeromonas hydrophila subsp. hydrophila ATCC 7966 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas hydrophila; 9.051606233 8.945275322 9.128199001 8.526665312 8.666944899 8.550267144 8.509160755 8.572628575 8.417833024 8.864351028 8.579502334 8.829157966 11037223 Catechol Organic Remediation Aromatics Other aromatics Agrobacterium tumefaciens 9.471657385 9.67177376 9.374775638 9.696050941 9.62374916 9.539896758 9.926935997 9.756307941 9.379158283 9.459533073 9.564650129 9.402071257 90023478 phoB Stress Phosphate limitation Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 9.423693782 9.536951476 9.276658698 9.134525068 8.768992667 8.614729307 217331421 aoxB Metal Resistance Arsenic Ochrobactrum tritici superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum; 8.19887297 8.378063901 8.476089196 7.848693727 8.036805898 8.221535474 8.150887565 8.040679853 8.094638489 8.404471133 8.167108559 8.510209977 121520983 gyrB other category gyrB Thermosipho melanesiensis BI429 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermosipho;species:Thermosipho melanesiensis; 8.225120001 8.140666397 8.698855763 7.690273627 7.610589676 7.58553186 7.446268264 7.670323064 7.775977566 213923821 ppk Phosphorus Phosphorus utilization Pseudomonas syringae pv. tomato T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 8.574642768 8.129079868 8.265868198 8.426472236 8.082564599 8.049744811 8.244038131 8.297323157 8.266441721 8.216722474 242373631 katE Stress Oxygen stress Staphylococcus epidermidis M23864:W1 9.021484926 8.761118903 9.076633053 8.599617374 8.542244807 8.427445106 8.726375762 8.547951377 8.554468012 8.590019704 8.388422282 8.805314183 116249169 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.567663197 8.752254436 8.585775744 8.262580342 8.367720976 8.152415746 8.187057414 8.349639944 8.319804783 8.31313436 8.17572614 8.377169147 150036090 sox Sulphur Sulphur oxidation Chlorobium limicola superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium; 8.499873575 8.405302619 8.800642953 8.032637802 7.604549963 8.188547162 7.846536428 7.317873516 8.219390675 7.755438716 7.800781147 8.055051964 90420336 trzN Organic Remediation Herbicides related compound Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 9.050249642 9.072303049 9.139402197 8.739103478 8.849599214 8.716722418 8.689353852 9.065472008 8.619790339 9.085235544 8.911039074 9.050360333 197119301 nrfA Nitrogen Dissimilatory N reduction Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 7.89822704 7.789159622 7.952483779 8.002293297 8.326006814 15073642 AceA Carbon cycling Carbon degradation others Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 8.941813825 8.717837321 9.353929856 8.792473325 8.730335176 8.745542921 8.601461133 8.545846156 8.326843711 8.666406119 8.684977658 8.748781326 113528035 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.304184283 8.193618042 8.000775611 7.851020196 7.807681852 7.811928188 8.207887543 8.169523851 8.390785807 8.162621878 8.200055343 168196958 fnr Stress Oxygen stress Methylobacterium sp. 4-46 8.514887302 8.34004627 8.699825249 8.529691938 8.406251202 8.048288833 8.106207554 8.528627543 8.618311402 8.383638098 8.105075783 8.531389324 256375271 amyA Carbon cycling Carbon degradation Starch Actinosynnema mirum DSM 43827 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinosynnemataceae;genus:Actinosynnema;species:Actinosynnema mirum; 9.729004312 9.986458557 9.887225731 8.741631284 9.215124395 9.504791452 9.926206127 8.992192749 10.00703078 9.222914816 9.204269501 9.201138616 159186182 xylA Carbon cycling Carbon degradation Hemicellulose Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.120962185 8.401585458 8.149004627 8.189900341 8.07207763 8.062855206 8.399229287 8.374235673 8.369610778 8.394203191 8.562599842 8.441442881 158331693 nmoA Organic Remediation Aromatics Nitoaromatics Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 8.527079021 8.720752009 8.21350723 8.322518578 8.34917053 8.55680135 8.94526706 8.848655751 8.373230242 9.08607233 8.815649477 9.029322949 148657565 hrcA Stress Heat shock Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 8.628989556 9.118559733 8.712228226 8.269221484 8.084582829 8.365735086 8.841497045 8.385716988 8.633808257 8.131618408 8.294048653 7.989678482 182415495 sigma_24 Stress Sigma factors Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 9.425382673 9.411775847 9.355736152 8.869131828 8.782288824 8.833045719 8.964150845 8.669531961 9.233615408 9.028293775 9.150586969 9.148581887 148243907 mercury_resistant_gene Bioleaching Metal Resistance Acidiphilium cryptum JF-5 8.169149057 8.357009752 7.833829386 7.970381381 7.958451789 7.942109943 7.819731235 8.238656184 8.035054428 8.291603397 8.067303173 169155556 TerC Metal Resistance Tellurium Clavibacter michiganensis subsp. sepedonicus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 8.989005535 9.004653019 9.178580034 9.039503537 8.719881898 8.479760488 170693212 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 9.441734471 9.450381672 9.084822003 8.855627108 8.193049542 8.683049095 9.160650356 8.728750347 9.041165205 8.742370116 9.033536409 8.609513009 184156352 grpE Stress Heat shock Acinetobacter baumannii ACICU superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 8.121372822 8.321787012 7.373552541 7.230232401 7.148701046 6.706149532 7.524416471 7.173489192 7.114443196 7.536150676 219945439 CopA Metal Resistance Copper Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 8.889812374 8.705969812 9.487109582 8.739674632 8.577206723 8.543092826 9.02466105 8.629016186 9.021386084 8.76341626 8.899934236 8.852853347 118053493 mhpA Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 9.325149334 9.647779134 9.488003632 8.485872102 8.990892726 9.066712803 8.624067804 9.081105654 8.818443952 9.024671124 9.06205315 89099726 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bacillus sp. NRRL B-14911 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 8.266280983 8.489139865 8.631801535 7.948982404 7.810112208 7.904933821 7.915392302 7.910165129 8.111911124 7.605804356 7.7441708 7.883724665 77974163 SilA Metal Resistance Silver Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 8.758729098 8.658870373 8.878583733 8.767834454 8.346496705 8.334736016 8.681585213 8.607640784 8.584778486 8.382047771 8.396140183 8.408754733 218295602 pilin virulence pilin Thermus aquaticus Y51MC23 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus aquaticus; 9.545923987 9.46024747 9.704892538 8.843325045 8.671736626 8.697627184 8.652215903 8.638958681 8.57840243 8.751588525 8.755332 9.063314873 255333052 katA Stress Oxygen stress Geobacillus sp. Y4.1MC1 8.305677947 8.01818215 7.90810019 7.888019415 7.862676453 7.651672151 7.646090737 7.127614058 7.95973021 7.365291942 7.457551724 7.456091879 124483586 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Herbaspirillum seropedicae superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum; 8.470493586 8.595507741 8.675386404 8.87393837 8.874095189 8.833351097 9.047735575 9.093071516 8.706229601 9.0544305 9.109586548 8.75661687 171184930 glnA Stress Nitrogen limitation Thermoproteus neutrophilus V24Sta 8.664493874 8.905619173 8.999208823 8.615535708 8.674844204 8.415521148 8.900182939 8.879911951 8.839205653 9.130970844 9.124165678 8.83986431 153005821 AceB Carbon cycling Carbon degradation others Anaeromyxobacter sp. Fw109-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 8.477566737 8.374563437 8.586129991 8.523992036 8.463438143 8.177631907 8.482885301 8.59270652 8.617392613 8.623323042 8.302187858 8.421608137 54297175 scnABC Organic Remediation Others Legionella pneumophila str. Paris superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella;species:Legionella pneumophila; 8.82190966 8.799679955 8.87745086 8.264414816 8.109292078 8.015896575 7.527228577 7.650971083 8.162868016 7.955829156 7.807993533 8.087288776 254461693 sox Sulphur Sulphur oxidation Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.32408166 8.400450872 8.493556619 7.940287716 7.947420297 7.847923293 7.980575739 8.241290488 8.39372328 8.142836145 8.010989951 8.181026431 254399742 B_lactamase_C Antibiotic resistance Beta-lactamases Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 8.561420509 8.696583411 8.479350189 9.011813227 8.735108398 8.735036021 8.622576772 8.779075707 8.602575976 8.553521063 8.41830039 199594051 narG Nitrogen Denitrification uncultured bacterium 9.377259362 9.399497513 9.445352882 9.097987136 9.187672638 9.061957956 9.056313655 9.197907724 9.58054534 9.396801113 9.345194597 9.185972906 167754493 sigma_70 Stress Sigma factors Alistipes putredinis DSM 17216 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes;species:Alistipes putredinis; 8.078171894 8.102341791 7.842568739 7.732630556 7.732778966 7.667867099 7.651794933 7.954116849 82703854 sigma_32 Stress Sigma factors Nitrosospira multiformis ATCC 25196 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira;species:Nitrosospira multiformis; 7.035181818 7.18892046 7.194093077 6.9029983 6.694833685 7.447100025 7.050559487 6.980848298 7.334612458 145224138 SMR_antibiotics Antibiotic resistance transporter Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.781172158 8.466560191 8.513775001 8.862740881 8.41920995 8.790774204 8.286798319 8.85745874 8.497635638 8.514001652 8.805121393 8.52546083 3378434 vdh Carbon cycling Carbon degradation Others Novosphingobium aromaticivorans 9.23047224 9.251260552 9.452312229 8.873123461 8.759053309 8.5568238 8.52936719 8.658881078 8.542488328 8.541335328 8.60144811 8.959928619 159184775 sigma_24 Stress Sigma factors Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.292964364 8.361148807 7.778712237 7.860484374 7.974434821 7.499751904 7.834629642 8.032322763 8.009812196 8.075246736 8.151404236 158306363 nirA Nitrogen Assimilatory N reduction Acaryochloris marina MBIC11017 8.958406172 8.876215638 9.052994146 8.107628918 8.201078485 8.427201207 8.921423858 8.328333595 9.136890741 7.784923153 7.757878015 7.990158905 13472330 MFS_antibiotic Antibiotic resistance transporter Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 10.41596755 10.44240989 10.16242022 10.29039082 10.11477829 10.00598126 10.14379509 10.24836694 10.31745757 10.31352526 10.42404583 10.11363347 152971607 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Klebsiella pneumoniae subsp. pneumoniae MGH 78578 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 9.188905875 9.082977322 9.374014267 8.763920246 8.664262635 8.554120521 8.556358118 8.072969472 8.96864133 9.050173088 76165912 ChrA Metal Resistance Chromium Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 8.944454215 8.885229782 8.844151143 8.462769377 8.420742946 8.631545403 8.229629299 8.587412259 8.469589616 8.353405767 8.461451075 8.389856588 15074184 P450 Energy process Energy process Sinorhizobium meliloti superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium; 8.727282887 8.94742201 8.606729112 8.262086295 8.561190586 8.840152442 9.1659058 8.506419071 8.547842769 8.229218176 8.377954655 8.320097144 237846178 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9.531050283 9.805301261 9.775374563 9.638269715 9.782090743 9.761579616 9.843950099 10.21419603 9.765084876 10.05029567 9.912813399 10.11977564 119356695 dnaK Stress Heat shock Chlorobium phaeobacteroides DSM 266 8.522589289 8.391186058 8.12377342 8.035686889 7.9280986 7.846254792 7.80453528 8.470179777 8.337735477 7.925747173 7.879765795 8.102818562 71841647 narI Stress Oxygen limitation Pseudomonas stutzeri superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 10.48043081 10.19863009 10.24229819 10.18534769 9.988395536 9.917967259 10.24769523 10.11766072 10.00780732 10.11689707 10.31740235 10.06679098 157146778 ahpF Stress Oxygen stress Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 9.068726374 9.250274233 9.143154448 8.524956083 8.305901842 8.605796927 8.614923802 8.516195208 8.446561914 8.385751899 8.49347525 8.771995506 240267030 pstB Stress Phosphate limitation Bartonella grahamii as4aup 8.339487386 8.283421762 8.677904407 7.916889852 7.654729634 7.902875606 7.436709996 8.049246354 7.694155069 7.550137921 7.743089307 260771419 AceA Carbon cycling Carbon degradation others Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 7.541164882 7.647428023 8.029431283 7.377829707 7.908179331 7.831072709 7.685012678 7.837124895 7.711466424 70983488 nbaC Organic Remediation Aromatics Nitoaromatics Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 8.447903259 8.251214381 8.261662653 8.124399854 7.74416997 7.711825849 7.842182667 8.09880264 7.854242887 7.586979986 8.041692213 119899246 CopA Metal Resistance Copper Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 9.309824434 9.37992857 9.50281683 9.630588576 9.729585969 9.340108556 9.585877471 9.920412545 9.756358294 9.644804306 9.278203237 9.704049424 119391429 narG Nitrogen Denitrification uncultured bacterium 8.465126576 8.434721508 7.51860284 7.850321968 7.84577383 8.082723678 7.819770112 7.700225508 8.19920036 8.065575326 115423534 silC Metal Resistance Silver Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 8.927914815 8.518528249 8.662172477 8.3841615 8.175893926 8.149446865 8.252392631 8.282135121 8.250636437 7.947457995 8.274211686 62468072 bco Organic Remediation Aromatics Aromatic carboxylic acid uncultured bacterium superkingdom:Bacteria; 8.590102979 8.477586943 8.532269041 8.155940059 8.094706902 8.102313489 8.350674616 7.850696071 8.529106014 7.969594401 7.801628084 8.155977675 56180218 pstC Stress Phosphate limitation Idiomarina loihiensis L2TR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina loihiensis; 8.494436229 8.231387174 8.640918214 7.795586238 7.90534255 7.912124251 7.453662094 7.596708353 8.001485413 7.758995102 7.70227661 7.982631867 92911379 alkB Organic Remediation Other Hydrocarbons Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 9.485434715 9.192637115 9.701278896 9.388603795 9.256761758 8.878495923 9.283649635 9.588662247 9.009343396 9.497246678 9.53275292 9.841940873 23978276 gyrB other category gyrB Pleurocapsa sp. PCC 7327 superkingdom:Bacteria;phylum:Cyanobacteria;order:Pleurocapsales;genus:Pleurocapsa;species:Pleurocapsa minor; 9.391390024 9.304268405 9.3327625 8.793058594 8.413150273 8.661998378 8.327043374 7.947561392 8.477902921 8.254123704 8.56544532 8.790554926 159044083 pstC Stress Phosphate limitation Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 8.977900485 8.824363312 8.849555839 8.390631659 8.330440381 8.260935961 8.076392294 8.239464457 8.62636796 8.303989717 8.191010222 8.467868904 193161068 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.715561127 8.668575121 8.575960831 8.858605103 8.547465574 8.431967473 8.284824727 8.830357366 8.720091023 8.605036119 8.524185252 8.767723807 90204437 ureC Nitrogen Ammonification Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.981475282 8.731759729 8.945160071 9.233888329 9.009270789 8.688265319 8.492015812 8.364147126 196477032 Arylest Organic Remediation Aromatics Other aromatics Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 9.448147529 9.497911628 9.467276823 9.787352325 9.861197036 9.676466833 9.966318061 9.865914686 9.57070989 9.807515312 9.785163738 9.514888245 158522400 TehB Metal Resistance Tellurium Candidatus Desulfococcus oleovorans Hxd3 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus;species:Desulfococcus oleovorans; 8.614897027 8.395979852 8.273531906 8.291498905 8.449650806 8.321783797 7.989553332 8.423834593 8.041492457 8.488235253 8.161370566 82798482 gyrB other category gyrB Acholeplasma cavigenitalium 8.684603164 8.54833585 8.549365374 8.068624994 7.896584602 7.935369657 7.522077673 7.506284253 8.074233663 7.694491473 7.52538632 7.776871661 218515847 nagL Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium etli 8C-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 9.019002298 9.226635116 8.886615015 8.758274554 8.950296018 8.787133583 8.620387882 9.447587476 8.31239908 9.06247158 9.001467732 8.884264516 209516934 AceB Carbon cycling Carbon degradation others Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.807035942 8.87857449 8.956200187 8.79227302 8.843503712 8.761850508 8.610188682 8.776045414 8.85181926 8.978457793 8.902963387 8.909268618 76577544 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.306516667 9.600836111 9.081026978 8.04684263 8.195346244 8.136078569 7.741097294 7.999137436 8.022722623 8.162109493 8.026616134 8.136091984 27382931 alkK Organic Remediation Others Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.244668727 8.433862675 8.204458027 8.393756051 8.26660377 8.069924521 8.749235235 8.805783076 8.284618181 8.798258911 8.453022991 8.292141048 268311677 AceA Carbon cycling Carbon degradation others Thermomonospora curvata DSM 43183 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora;species:Thermomonospora curvata; 10.1121668 10.14575377 10.19396045 9.275774333 9.412158499 9.52319054 9.597597424 9.354069465 9.829815946 9.528398474 9.597400453 9.621462399 148503267 bphA Organic Remediation Aromatics Polycyclic aromatics Sphingomonas wittichii RW1 8.875450243 8.843452338 8.903644773 8.336405452 8.11304373 8.411240194 8.293799991 7.965807113 8.062576896 8.194617548 8.254012753 8.102317759 227099121 pstA Stress Phosphate limitation Geodermatophilus obscurus DSM 43160 8.829310593 8.649194893 8.795135278 7.781570335 7.802523761 7.916461638 7.991076691 8.235556912 7.836336635 7.735805786 7.87089666 83309233 linC Organic Remediation Pesticides related compound Magnetospirillum magneticum AMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 8.81477606 8.908017177 8.620241021 8.472889337 8.325573227 8.361426336 8.336510405 8.263044417 8.26715736 8.333817774 8.368629216 8.316659782 214031349 nhh Organic Remediation Aromatics Nitoaromatics Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8.558007884 8.511920811 7.842253735 7.513468924 7.236737549 7.104585559 7.624805617 7.507394259 7.366246395 206591648 iro virulence Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 7.545459552 7.540899645 7.317623465 6.925901902 7.766914555 7.396932421 7.194584131 51891570 obgE Stress Radiation stress Symbiobacterium thermophilum IAM 14863 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVIII. Incertae Sedis;genus:Symbiobacterium;species:Symbiobacterium thermophilum; 9.288330206 9.527905992 9.363346663 8.731330173 9.244765909 9.376835075 9.433386241 9.388789899 9.179303982 9.374107269 9.302252749 206677399 sigma_24 Stress Sigma factors Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.917196897 9.136229186 9.173797742 8.548504135 8.257098336 8.22887047 8.336030998 8.298461314 8.089366256 8.176296547 8.059594478 8.508842796 256673164 grpE Stress Heat shock Streptomyces sp. AA4 9.051134201 8.632338359 8.691003577 8.813257963 8.890568088 8.625842608 8.789225761 9.369206902 8.731352115 8.982408715 8.641869364 8.990940558 254391488 amyA Carbon cycling Carbon degradation Starch Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 9.241255069 8.805581594 8.335730844 9.328140843 9.183502768 9.069868342 9.191346837 9.071959391 8.675833943 8.994411236 9.180194225 8.804773345 161379865 CopA Metal Resistance Copper Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 9.504624594 9.797666418 8.389491919 8.435246177 8.583120065 118589379 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 8.846111817 8.382016346 8.822405694 8.026703143 7.839464944 7.848880166 7.887958125 7.833108483 8.215123917 7.821067028 7.727090735 8.086937872 124521174 CadA Metal Resistance Cadmium Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 8.230245649 8.219392232 8.825501462 7.964345468 7.652952305 7.577862385 7.285142977 7.583032291 7.880991059 7.573761011 7.703027853 7.673894533 134134413 amyA Carbon cycling Carbon degradation Starch Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 8.301817159 8.424010329 8.293333035 8.698169852 8.466759662 8.415157205 8.045707015 8.389110353 8.362472474 8.275539566 8.395160155 8.231074157 58426066 sigma_24 Stress Sigma factors Xanthomonas oryzae pv. oryzae KACC10331 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 9.022223755 8.81585892 9.096546689 8.199858379 8.379255061 8.299812731 8.723655527 8.181435542 8.631118045 8.31483369 8.314658069 8.432179047 269834398 SMR_antibiotics Antibiotic resistance transporter Vibrio harveyi 1DA3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 8.321732445 8.337292366 7.74804905 7.73809878 7.491164568 7.276203273 7.88282576 7.474243324 7.319303168 7.864769002 iegcoxL103 CODH Carbon cycling Carbon fixation 8.409405721 8.0387848 7.625886564 7.740510214 7.70096546 7.112828115 86372257 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Trichoderma atroviride superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Trichoderma; 8.688389343 8.883010802 8.732838905 8.777123786 8.667397033 8.785201659 8.536089163 8.878772857 8.685212296 8.874152364 8.946400314 8.585947636 197712962 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 9.108426233 9.167838646 9.147305734 8.488433592 8.369829587 9.032928863 9.015874986 8.698511938 9.038842054 8.836305628 9.006582561 9.166528527 88935953 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 8.723249549 9.341004189 8.991019373 7.344016197 7.736399273 7.699462335 7.313201568 7.621004388 7.959919621 8.079493782 7.928623333 7.771135504 197782333 HBH Organic Remediation Aromatics BTEX and related aromatics Streptomyces sviceus ATCC 29083 8.926020161 9.258243928 8.828475887 8.530690106 8.621800805 8.31109332 8.522773966 8.5179341 8.20432355 8.43890516 8.349148806 8.449386522 118592546 nreB Metal Resistance Nickel Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 8.794992341 9.130577676 8.610756456 8.798010998 9.009541233 8.865106386 9.156939225 9.385656052 8.873518716 9.314589168 9.164619458 9.248136442 209536833 CadA Metal Resistance Cadmium Rhizobium leguminosarum bv. trifolii WSM2304 8.389268067 8.15945195 8.289520163 7.837929364 7.512528624 7.764775049 8.212703868 8.081387878 7.781355697 8.092011566 133948808 Catechol Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 9.21265204 9.076193231 9.132640078 8.974619402 8.909122679 8.666542754 8.692180998 8.931911698 8.754081434 8.854495195 8.934789726 9.144287743 62512303 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.337070126 8.41822358 8.753847528 8.09869699 7.807735945 8.029888221 8.126846943 7.653538597 8.610570149 7.895628691 7.439367594 7.73876391 283847514 sigma_24 Stress Sigma factors Bacillus cellulosilyticus DSM 2522 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cellulosilyticus; 8.85605194 8.502660858 8.288232728 8.289311005 8.072779344 7.775669655 7.708349043 7.472694752 8.157067101 7.818520865 7.889688457 8.068171489 145221152 cumA Organic Remediation Aromatics Other aromatics Mycobacterium gilvum PYR-GCK 8.337230804 8.389490857 8.501791954 7.910206812 8.135213856 8.088374007 7.640308083 8.418737375 8.006541111 8.377888932 8.089811975 8.183436891 126728076 PobA Organic Remediation Aromatics Aromatic carboxylic acid Sagittula stellata E-37 8.672150802 8.494092534 8.37124833 8.529836281 8.421708515 8.47718387 8.253613455 8.574032832 8.423338152 8.397682759 8.245441346 159180690 atzC Organic Remediation Herbicides related compound alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 8.586263945 8.096007653 8.17815496 7.953632196 7.671365962 8.304375844 7.930834711 8.086966743 8.015509472 8.032176372 269788172 AceB Carbon cycling Carbon degradation others Sphaerobacter thermophilus DSM 20745 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 8.350843562 8.116984555 8.044316672 7.864396879 7.687007512 8.089200892 8.009944133 8.07877209 8.062919319 7.85895846 7.65494328 2547079 pstC Stress Phosphate limitation Enterobacter cloacae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 8.384960713 8.663323018 8.702625258 7.933626408 7.392679641 8.161211294 8.051403742 7.696984135 7.769830574 7.796938163 8.099221104 22295038 grpE Stress Heat shock Thermosynechococcus elongatus BP-1 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Thermosynechococcus;species:Thermosynechococcus elongatus; 8.146381704 7.954413159 6.653637166 7.002283296 188583396 ChrA Metal Resistance Chromium Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 8.249612877 8.609159017 8.373969905 8.000768224 8.151461329 7.988152641 8.271837024 8.215343426 8.000583668 8.27137644 7.918402574 119864846 pimF Organic Remediation Aromatics Aromatic carboxylic acid Psychromonas ingrahamii 37 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas;species:Psychromonas ingrahamii; 8.554667205 8.412665748 8.758077191 7.7435977 7.584520754 7.524729645 6.929466921 7.457613381 7.522808554 7.423072413 7.189132147 7.493235992 6578527 katA Stress Oxygen stress Aggregatibacter actinomycetemcomitans 9.683409651 9.293384854 8.832900118 8.896138515 8.804846981 9.005752688 8.787621484 9.321003183 8.75536955 8.804808772 8.683310101 158320061 ChrA Metal Resistance Chromium Alkaliphilus oremlandii OhILAs superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus oremlandii; 8.62011066 8.562331867 8.704179714 7.973502265 7.7664235 8.217685967 7.670047955 7.766954242 7.86569087 7.931461453 8.180138394 58267754 glx Carbon cycling Carbon degradation Lignin Cryptococcus neoformans var. neoformans JEC21 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Tremellomycetes;order:Tremellales;family:Tremellaceae;genus:Filobasidiella;species:Filobasidiella neoformans; 7.439081198 7.626120446 7.917870621 7.823358094 7.755199837 8.017940107 7.712432725 7.588541391 7.615843347 154161419 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 9.344663773 9.178061561 9.447664323 8.863902388 8.819079966 8.894907137 8.568915694 8.650119445 8.713911925 8.468741841 8.977209343 133948830 Catechol Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 8.591335392 8.499282213 8.613127611 8.401710893 8.544498468 8.257221381 8.516218354 8.891661575 8.643410989 8.84994584 8.737919178 8.855445195 83590440 dsrB Sulphur sulfite reductase Moorella thermoacetica ATCC 39073 8.898817503 8.679422443 8.448202087 8.27566655 8.058888112 8.212468642 8.368794329 8.365266934 8.179528199 7.905578519 8.333875434 111018866 nagG Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.122615388 8.158784978 8.508679559 7.713313305 7.757718783 7.931527427 7.674349288 7.348556723 8.090702723 7.632379324 7.561202944 7.769535095 256372657 clpC Stress Protein stress Acidimicrobium ferrooxidans DSM 10331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Acidimicrobiales;family:Acidimicrobiaceae;genus:Acidimicrobium;species:Acidimicrobium ferrooxidans; 8.33940251 8.3420205 8.356482522 7.677871961 7.676447958 8.125156126 8.050617816 7.925258012 8.295438373 7.366441065 7.439361055 7.66909295 110819980 alkK Organic Remediation Others Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.342228017 8.381838428 8.731654652 7.902525412 7.554898038 7.762208101 7.917003205 7.271792114 8.22659952 7.412077517 7.786771414 7.558415726 92114594 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 8.835227779 8.545620705 8.454304574 8.206806899 8.686953636 8.771300656 8.442686621 8.676590216 8.628361996 8.403958878 8.761196824 8.289107988 145300341 sigma_38 Stress Sigma factors Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 8.363251812 8.049293263 7.938163164 7.978892697 7.972987907 7.952012326 7.227398812 7.683624775 7.596318079 94311241 CopA Metal Resistance Copper Ralstonia metallidurans CH34 8.484769633 8.53153367 8.829378874 8.535873361 8.493265384 8.120184647 8.343519295 8.68490975 8.461977044 8.453743297 8.562329738 8.619416191 239837931 pstA Stress Phosphate limitation Micrococcus luteus NCTC 2665 9.143495805 9.421182892 9.385494045 8.933950281 9.010459814 9.363953823 9.843153771 8.684614984 9.573395263 9.098323618 9.240621198 9.306856672 116698616 ppx Phosphorus Phosphorus utilization Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 10.02343011 9.894644851 10.04948724 8.742164444 8.784001861 8.944899128 9.477995995 9.057856547 9.48470967 8.927429659 9.003248582 9.145410308 119474775 pimF Organic Remediation Aromatics Aromatic carboxylic acid marine gamma proteobacterium HTCC2143 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.560566572 8.294980785 8.431118147 8.053589564 8.3160174 8.141228426 8.196313672 8.530527294 8.278561599 8.422547788 8.280666111 8.250085491 256813633 amyA Carbon cycling Carbon degradation Starch Streptomyces griseoflavus Tu4000 9.453675126 9.297110905 9.304927648 8.894408376 8.828630138 8.686184344 8.630321215 8.917763298 8.794574046 9.126413719 9.148165021 9.144956091 239910215 proV Stress Osmotic stress Thermococcus gammatolerans EJ3 8.14559202 8.043324186 8.201713637 7.677137789 7.481951626 7.467638537 7.31318346 7.441924383 7.778732282 7.636483865 7.507150154 7.574315411 77920195 ArsC Metal Resistance Arsenic Pelobacter carbinolicus DSM 2380 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter carbinolicus; 8.754322673 8.672661007 8.821073393 8.273762097 8.291045485 8.034404682 8.139943498 8.115550384 8.181716608 8.142501731 8.182870591 8.503506396 86159488 cytochrome Energy process Energy process Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 8.999381035 9.043051476 9.175832104 8.828506282 8.713435019 8.622244955 9.223357332 8.602751128 9.323260945 8.344351787 8.204346576 8.364942929 23821270 aoxB Metal Resistance Arsenic Thiomonas sp. VB-2002 7.952626739 7.673324292 7.380769031 7.856104463 7.645835479 8.206165027 7.71050724 7.368087758 7.558193639 120325139 fnr Stress Oxygen stress Marinobacter aquaeolei VT8 8.278394247 8.14336189 7.341316301 7.508386095 7.738195456 7.454101857 7.813272871 126709539 gyrB other category gyrB Sagittula stellata E-37 8.765478119 9.247322461 8.733922128 8.357623103 8.397077685 9.154537591 9.198015766 8.819308231 8.790012746 8.643098446 8.962866395 8.770048545 166033082 sigma_24 Stress Sigma factors Dorea formicigenerans ATCC 27755 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Dorea;species:Dorea formicigenerans; 8.780322881 8.927234595 9.146211258 8.082922251 8.06720111 8.107955433 7.824546655 7.29414476 8.179802037 8.221855147 8.341721653 133778502 endochitinase Carbon cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 9.612935812 9.596195858 9.659258424 9.188231451 9.259918266 9.111866707 9.216053398 9.6447637 8.944227709 9.483321118 9.665212069 9.615405683 221069666 bclA Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.260240584 7.10856028 7.513914504 7.463910504 7.138828355 7.59806548 7.207231848 7.454558396 7.687421267 209504355 pmdAB Organic Remediation Aromatics Others Burkholderia sp. H160 8.094903738 8.069614757 7.847199066 7.730512742 7.784542941 7.841862164 7.9681355 7.925736547 7.9534187 7.920545379 7.872113004 126593827 TerZ Metal Resistance Tellurium Bacillus sp. B14905 9.33353292 9.241448306 9.275828443 8.659674172 8.585867243 8.496542383 8.378101627 8.231431332 7.298358825 8.381926356 8.792127568 204304749 alkB Organic Remediation Other Hydrocarbons Bacillus sp. BTRH40 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 9.317415151 9.258713995 9.449559196 8.749980771 8.375853871 8.689122782 8.529625882 8.435164572 8.532267947 8.77225709 8.671341562 8.908231313 149914858 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.904290221 9.346856764 9.25665411 9.209254036 9.215507318 8.916485956 9.308181758 9.808151834 9.16161027 9.63464192 9.297425433 9.595815006 85773574 pilin virulence pilin Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 9.236484093 9.301962247 9.382015644 8.918485263 8.822780417 8.72299273 8.613487905 8.854483306 8.797378756 8.947563132 8.991442171 9.146171763 125714209 mannanase Carbon cycling Carbon degradation Hemicellulose Clostridium thermocellum ATCC 27405 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 8.705925565 8.66689534 8.418104895 7.966057915 7.903921863 8.034929202 8.446675439 7.745437469 8.815884329 7.90598743 7.750882706 7.750501865 134298297 hly virulence hemolysin Desulfotomaculum reducens MI-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum reducens; 8.716324887 8.602114633 8.72946873 8.178931597 7.937875704 8.042792227 7.887019033 7.485901522 8.177431065 7.641464425 7.568165428 8.072606129 46371007 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 10.1112179 9.743677188 10.17152714 9.609766868 9.695911249 9.553660215 9.580517056 9.83073718 10.02119716 10.18265313 10.23546703 10.00130352 256758263 sigma_38 Stress Sigma factors Thiomonas intermedia K12 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas;species:Thiomonas intermedia; 8.536432181 8.314739974 8.094405056 8.225752543 7.988002043 8.156540422 8.128581972 8.043983122 7.799377112 7.852017842 22596902 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 9.521702413 8.325969094 8.287143074 9.621470338 9.536378581 9.445896092 9.262732627 9.320410195 8.595759472 9.345134201 9.238559459 8.926401317 170774845 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 8.681254988 8.667218132 8.616135993 8.504908644 8.303312449 8.198346719 8.501575224 8.643536933 8.506284989 8.348576014 8.374477744 8.362272202 15528431 mercury_resistant_gene Bioleaching Metal Resistance Acidithiobacillus ferrooxidans 8.086631369 8.110493803 7.727981665 7.235764314 8.03276291 7.316494512 7.291486091 146411339 CusF Metal Resistance Copper Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 9.444646364 9.360506046 9.012326857 8.744177018 8.742367785 8.798050856 8.991106021 8.46058659 9.443773129 8.485944905 8.408590521 8.346697411 110835040 sigma_24 Stress Sigma factors Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 9.30751481 9.385008126 9.333616102 9.131415944 9.177740989 9.046525042 9.035684312 9.104376017 9.023119591 9.249784999 9.039385634 9.098515892 239805882 gyrB other category gyrB Geobacillus sp. WCH70 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.256676272 8.649413952 8.098931306 7.660991182 7.948350717 8.262245989 7.884993904 8.094125999 8.010517298 8.01970806 42555706 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 8.026996252 8.107254938 7.416040327 7.493822774 7.488247071 7.575172004 7.311239673 7.388524075 7.237156839 7.243496833 7.406654217 63081906 nosZ Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 8.383580977 8.515649622 8.516469891 8.205872853 8.493843438 8.45568561 8.149714548 8.4618801 8.493154317 8.433927061 8.448235145 8.409481671 161381921 hrcA Stress Heat shock Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 9.137666996 9.130855717 8.980439526 8.491600395 8.685355744 8.843208651 9.313287637 8.669840907 8.96401958 8.677451403 9.009452618 8.66182022 91698538 pcaG Organic Remediation Aromatics Other aromatics Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 8.577597894 8.479630468 8.444975618 8.339508842 8.422933876 8.2321971 8.413308906 8.651239136 8.881218054 8.490753664 8.427386747 8.414460322 126359060 nmoA Organic Remediation Aromatics Nitoaromatics Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.764528997 7.906285072 8.163003667 8.329593678 7.842596931 8.308264486 7.566152199 7.86980321 7.699049106 60475948 rubisco Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 10.29266126 9.740904677 9.509790412 9.501518297 9.574134562 9.49064262 9.900148711 9.348421966 9.923517686 9.856779765 9.601064171 9.59118791 255693907 pstB Stress Phosphate limitation Bacteroides finegoldii DSM 17565 8.988458622 8.656886341 8.986958681 8.425660899 8.482949641 8.279448118 8.552209057 8.748301124 8.718321298 8.547843304 8.40715323 8.476869653 83363007 nasA Nitrogen Assimilatory N reduction Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 8.589919446 8.524804047 8.354038227 8.318318956 8.235530843 8.339511311 8.041620864 8.511439998 8.216282159 8.387617167 8.363670368 7.992935078 119879226 BADH Organic Remediation Aromatics Other aromatics Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 8.549046466 8.77594843 9.077217515 8.538975344 8.308028296 8.467404561 8.309435873 8.170344371 8.391791528 8.333117627 8.41938461 8.624249171 115390094 endochitinase Carbon cycling Carbon degradation Chitin Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 9.229543233 9.339054606 9.185354627 8.629093039 8.567350784 8.412211663 8.471770346 8.797291794 8.560251793 8.807169232 8.712810272 8.894161877 52787229 ZntA Metal Resistance Zinc Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 8.137202853 7.924802472 7.848256633 8.2265545 8.119417678 8.377771159 8.359020514 7.577791211 184155225 hrcA Stress Heat shock Lactobacillus fermentum IFO 3956 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus fermentum; 8.403009598 8.438588212 8.808860372 8.428147296 8.532655305 8.104740284 8.566093809 8.642587576 8.70936052 8.868026887 190574362 ArsC Metal Resistance Arsenic Stenotrophomonas maltophilia K279a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 9.843293007 9.722350435 9.85392482 9.564705016 9.872655993 9.515317906 9.760373451 9.939780205 9.942378087 9.786445201 9.650670381 9.619700241 224816699 sigma_24 Stress Sigma factors Thioalkalivibrio sp. K90mix superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 8.954918559 8.777491247 9.117597754 8.629458833 8.703687015 8.642547908 8.26324301 8.544574455 8.468856033 8.432384954 8.467548718 8.631883506 239910448 pstB Stress Phosphate limitation Thermococcus gammatolerans EJ3 8.461944218 8.807898163 8.71239792 8.67848277 8.499901085 8.130018642 8.289881803 9.135555342 8.244243185 8.74554971 8.374978119 8.610530827 71737385 TerZ Metal Resistance Tellurium Pseudomonas syringae pv. phaseolicola 1448A 9.459301589 9.254853666 9.514737149 8.978190131 8.382099717 9.131371034 9.178017357 8.80414509 8.97692569 9.174461513 9.413052556 145603940 nagI Organic Remediation Aromatics Aromatic carboxylic acid Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 8.609224104 8.710424129 8.791843614 8.063359729 8.13266336 8.110873293 8.377910639 8.042586317 8.105766244 7.992945393 8.16814395 126735884 nagG Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. CCS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.516705798 8.125887414 8.321626512 7.764171043 8.057663704 7.343018082 7.562397854 7.413120355 7.777111201 46917304 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.354254389 9.258598106 9.385064668 8.670599855 8.492183231 8.51945389 8.314436685 8.022658822 8.52636065 8.309653696 8.233566384 8.574311477 30249426 Arylest Organic Remediation Aromatics Other aromatics Nitrosomonas europaea ATCC 19718 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas europaea; 9.409787965 9.706528736 9.308754293 9.137224228 8.719367666 254172756 pcc Carbon cycling Carbon fixation Thermococcus sp. AM4 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus; 9.373603355 9.44161122 9.427423781 8.76238769 8.040695101 8.635376642 8.655730292 8.516779747 8.52391936 8.467533421 8.534292425 8.934776373 222450337 phn Organic Remediation Herbicides related compound Chloroflexus sp. Y-400-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus; 8.232966516 8.265003192 7.733407514 7.851514052 8.037293768 7.962562252 8.193001051 8.067996403 7.983006033 8.264996635 8.133353081 63256651 vanA Carbon cycling Carbon degradation Others Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 9.364603481 9.13863114 9.070048454 8.356375443 8.324865054 8.371841616 8.822969486 8.158946434 8.718220408 8.557454427 8.533478317 8.668281762 221731277 katE Stress Oxygen stress Diaphorobacter sp. TPSY superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax ebreus; 7.948312918 8.097365739 8.278382912 8.004390699 8.195601234 8.026227429 8.065056751 8.338350059 8.30944259 8.579811874 8.019434097 7.928334714 14027866 linC Organic Remediation Pesticides related compound Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 9.501301247 9.544825994 9.655872094 8.851379397 8.784209132 8.560260465 8.602421912 8.576249219 8.651438485 8.663672452 8.772550232 9.024210177 84702358 obgE Stress Radiation stress Parvularcula bermudensis HTCC2503 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 8.229961545 8.211562533 7.62312738 7.526937667 7.882351031 7.68520293 7.319724185 7.701578467 7.767371433 7.803363063 16503575 pstB Stress Phosphate limitation Salmonella enterica subsp. enterica serovar Typhi 9.399865674 9.576090957 9.556945416 9.402917536 9.25922083 9.251307191 9.434378083 9.191308304 9.53868077 9.66311523 9.724245457 9.509548365 158138798 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 8.403867739 7.858931859 7.66284403 7.714757429 7.575544823 7.639626316 7.455166223 7.611272974 7.527917597 7.325037387 7.449775971 148500643 ChrA Metal Resistance Chromium Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 9.09831251 9.300981502 9.109395611 8.775061386 8.914552005 8.910349821 8.780484647 8.750877046 8.949347688 8.663345142 8.772877702 8.786290961 119670771 ArsC Metal Resistance Arsenic Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8.236380744 8.032266105 8.042110709 7.319983904 7.47931272 7.480955231 7.16481082 7.36300524 7.844916705 116254793 atzD Organic Remediation Herbicides related compound Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.442098436 8.60123915 7.858677523 7.895980943 7.923564166 8.032879401 7.868149526 8.29444262 7.881681021 7.852196546 7.878037451 126359115 tfdA Organic Remediation Aromatics Chlorinated aromatics Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.164295331 8.429092525 8.311696567 8.79341182 8.658657765 8.596302345 8.655782179 8.757188946 8.532894405 8.827617334 8.879131168 8.332065832 226905912 cda Carbon cycling Carbon degradation Starch Citrobacter sp. 30_2 9.254139566 9.315330851 9.18533347 8.524688366 8.296010667 8.59497656 8.816168452 8.615594121 8.622550489 8.419830378 8.441863471 8.832674477 111017352 nirA Nitrogen Assimilatory N reduction Rhodococcus jostii RHA1 8.546906585 8.887651456 8.56231395 8.64764725 8.686208628 8.454820196 8.632772314 8.974415999 8.4725972 8.917196469 8.738330432 8.651670308 182636084 sigma_70 Stress Sigma factors Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 9.029265167 9.570764183 9.244697949 8.656577744 9.076003585 9.32808893 9.79133571 8.865923076 9.526068417 8.813314382 9.101907761 9.110403479 82947026 nosZ Nitrogen Denitrification Magnetospirillum magneticum AMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 8.235910181 8.327873332 7.892718196 7.554829439 7.81841295 8.099285965 7.788389046 8.353225678 7.614186944 7.36952616 7.444506283 283783990 pap virulence adhesin Citrobacter rodentium ICC168 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 8.74997389 8.832505184 8.992615462 8.223610873 7.936214 7.810112566 7.991837479 7.671280084 7.627630419 7.666038014 7.756819457 8.076313828 256820252 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Capnocytophaga ochracea DSM 7271 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga ochracea; 8.039447982 8.31012134 8.175186559 8.329284443 8.429756883 8.878777351 8.355537959 8.851789222 8.860453299 8.71542467 111219512 gyrB other category gyrB Frankia alni ACN14a 10.14628001 10.10298972 10.16853182 9.857822049 9.806178333 9.740329818 9.451583725 9.783762661 9.478865971 9.779698366 9.734529516 10.03299669 118050577 silC Metal Resistance Silver Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 9.471622411 9.553128285 9.141896434 9.105142866 9.104630912 8.951566405 9.234779223 9.258810153 9.287314039 9.455248432 9.397971082 9.20691065 206589500 ChrA Metal Resistance Chromium Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 8.642719119 8.551814094 8.479418733 8.385249979 8.149719645 8.682218028 8.799609782 8.421688754 8.84575797 8.434419004 8.614464381 8.546976128 109701514 pcc Carbon cycling Carbon fixation Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 8.112453846 7.949142267 7.075336941 7.025837556 7.059797277 6.776802294 6.472026833 6.967196867 7.49763505 114738324 sigma_32 Stress Sigma factors Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 9.007064433 9.065549406 8.82922493 8.81601184 8.865251038 8.687431456 9.141839857 8.777728721 223692216 sigma_32 Stress Sigma factors Desulfobacterium autotrophicum HRM2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium;species:Desulfobacterium autotrophicum; 8.172096846 8.37409365 6.985778576 7.061057362 126461194 SMR_antibiotics Antibiotic resistance transporter Rhodobacter sphaeroides ATCC 17029 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 8.699642897 8.936144555 9.004432099 8.902401661 8.912516789 8.782672803 9.049240045 9.412913622 9.052883957 9.286427307 9.040530815 9.196267397 229542419 phoA Stress Phosphate limitation Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 8.110321307 8.218153766 8.344299026 8.006850753 7.922960131 7.64409721 7.765139093 7.825493634 8.087721959 7.958478269 7.64099855 7.755257156 149374361 sigma_24 Stress Sigma factors Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 8.246150433 7.816424796 7.775507216 7.792097975 7.603173584 7.28681749 7.358167472 7.810233666 7.327063093 7.493709784 7.336735262 149810707 gyrB other category gyrB Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.928705133 8.886472866 9.056131947 8.411195761 8.490759865 8.657470478 8.971171438 8.123789145 9.048802003 8.753385806 8.827380728 8.75725275 55978420 xylF Organic Remediation Aromatics BTEX and related aromatics Thermus thermophilus HB8 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 8.369686907 8.067381777 7.131740294 7.423374515 7.575986437 7.789787156 7.164357009 7.845971134 7.490329042 7.489956134 86285356 nirK Nitrogen Denitrification Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 10.02384321 9.949652901 10.18572852 9.365529191 9.29506322 9.074357806 9.483128936 9.303561308 9.354245942 9.459179201 9.638774391 9.645264138 221084261 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 9.171738869 9.279801627 9.228170186 8.579880384 9.063057627 8.518615249 8.442081278 8.895664799 8.544217204 8.757918931 8.697232196 8.804439894 157322102 pmdAB Organic Remediation Aromatics Others Serratia proteamaculans 568 8.226673099 8.276894389 7.614907845 7.522549921 7.774037417 7.246245729 7.850363653 7.185320678 7.36325222 169239696 bphF1 Organic Remediation Aromatics Polycyclic aromatics Mycobacterium abscessus 8.030045402 7.874554984 7.775850065 7.916330941 8.099311276 8.125400663 7.995078199 8.036503631 88701121 atzA Organic Remediation Herbicides related compound Congregibacter litoralis KT71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 8.623211609 8.452675618 8.595098504 8.598754345 8.582473325 8.308316185 8.388479916 8.777859237 8.575327576 8.362403424 8.497874198 262401925 oxyR Stress Oxygen stress Vibrio sp. RC586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.875853827 7.883857281 7.692076844 7.596381152 7.571451261 6.871577267 8.080022277 7.866647971 7.741230255 7.874502856 7.875867808 239735891 amoA Nitrogen Nitrification superkingdom:Bacteria; 8.692605225 8.741390248 8.805669299 8.21886643 8.357235016 8.581696908 8.32948044 8.958461806 8.534873559 170691108 ChrA Metal Resistance Chromium Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 8.244772416 8.502749981 8.017629103 8.271273914 8.189407583 8.293524077 7.859495582 8.376013775 7.968217202 8.311294557 8.40538046 8.015649304 118170039 gyrB other category gyrB Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.301131436 8.829172296 8.309769766 7.88092089 7.822900205 8.141678612 8.559134263 7.8896621 8.548595914 7.784059598 7.722884317 7.928719171 56680868 bclA Organic Remediation Aromatics Aromatic carboxylic acid Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 9.660454067 9.730879987 9.873443244 9.1289852 8.918058834 9.156674427 8.924619565 8.667240315 8.855516045 8.93137285 9.043014566 9.153695001 66572054 Catechol Organic Remediation Aromatics Other aromatics Xanthomonas campestris pv. campestris str. 8004 8.486383167 8.741114832 8.720131676 8.968681002 8.893987538 8.573224162 8.870727765 9.304765972 8.938092277 9.261017597 8.877269998 9.11369779 126234866 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.258344843 8.285025267 8.097725922 8.155148947 8.143305802 7.870844393 7.965921773 8.274023247 8.326710166 8.162571626 8.10619747 8.064321252 225039490 Tet Antibiotic resistance other Blautia hydrogenotrophica DSM 10507 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Blautia;species:Blautia hydrogenotrophica; 8.485454497 8.846444733 8.00437671 7.776148191 7.657546342 7.561090789 7.738750545 7.936104081 7.872035579 7.569687591 8.079447167 15156560 ahpC Stress Oxygen stress Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.4822627 8.333791628 8.348682672 8.422335498 8.098387178 7.742818169 8.381940008 7.991154531 7.892948426 38505868 SilA Metal Resistance Silver Synechocystis sp. PCC 6803 8.315936522 8.164886841 8.352784687 7.808180182 7.612235974 7.555485015 7.371116517 7.644181475 7.552983846 7.40969303 7.490210975 7.734291374 90422793 phn Organic Remediation Herbicides related compound Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.690962153 9.676979879 9.524774694 9.481365513 9.60834079 9.430420212 9.835451269 8.836367848 10.00507099 9.233016101 9.039800056 9.180553873 77545081 tutFDG Organic Remediation Aromatics BTEX and related aromatics Pelobacter carbinolicus DSM 2380 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter carbinolicus; 8.386068568 7.804810678 7.431140982 7.281496328 7.270270711 6.979357403 6.975206957 7.367258672 254482744 glnA Stress Nitrogen limitation marine gamma proteobacterium HTCC2148 8.197873815 7.975431387 8.42631445 8.337590735 8.207859917 8.01805148 8.16631049 8.146070867 8.261174577 8.139227945 7.75717402 7.979253181 161616950 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 8.291738492 8.364944314 8.696645161 8.109736527 8.036416376 8.017161129 7.893405758 7.779760211 8.228113524 8.019883395 8.084867855 8.078746872 133915560 pnbA Organic Remediation Aromatics Nitoaromatics Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 8.96958796 9.087021203 8.839345578 9.098800842 9.179111608 9.573455919 9.276446833 9.138583264 9.229909609 9.175859482 9.413803793 188582648 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 9.946488518 9.70278703 9.939085323 9.368296231 9.408859336 9.185323905 9.353205992 9.398224352 9.310492017 9.383413994 9.275344283 9.616873141 157679034 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9.152315965 9.043542548 9.144648781 8.255646708 8.052990127 8.166005236 7.97284067 7.928937817 8.22167679 8.196226258 8.600138898 94553904 PobA Organic Remediation Aromatics Aromatic carboxylic acid Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 8.413959519 8.689738426 7.807875813 7.879347789 8.096567688 8.252973835 8.053731339 8.378068762 8.516348764 7.99796226 7.927724462 85823169 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.291580187 8.981815076 8.976652056 9.013048084 8.978834779 8.666195254 9.399728261 8.432364856 9.015663344 9.21938557 238697007 Tet Antibiotic resistance other Yersinia kristensenii ATCC 33638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia kristensenii; 9.611855714 9.952732113 9.667888496 9.443011636 9.782201221 9.893862981 10.01597778 10.20834754 9.940898134 10.19364956 10.25972811 10.36269716 197714697 nagG Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 9.546519334 9.90888182 9.867622272 10.23900372 10.38570361 10.05960634 9.985496679 10.54642463 9.940569775 10.31127209 10.19512491 10.19306858 114569132 sigma_24 Stress Sigma factors Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 9.459683165 9.324248501 9.157306886 9.096435857 9.06382794 9.00968842 9.365320443 9.037510187 9.446135485 9.024976512 9.091685789 9.088846514 116743235 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.185948495 8.202832643 7.23796336 7.078284722 7.400480651 144720 nplT Carbon cycling Carbon degradation Starch 8.789799818 9.344868368 9.356670152 7.946128997 7.925865764 7.632119671 7.888192736 82735823 vdh Carbon cycling Carbon degradation Others Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.598749104 8.699019976 8.72735827 8.28169651 8.361065961 8.441710477 8.35103509 8.215094632 8.726167291 8.31167214 8.300636053 8.187544529 26278906 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.27407411 7.924197169 8.374455308 8.129513593 7.733118352 8.086167281 8.140333217 8.25499999 8.144281631 8.326043198 8.441441086 8.314326337 196195471 gyrB other category gyrB Alcanivorax sp. DG881 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 8.078724444 8.044029071 7.940155893 7.847930568 7.725169788 8.053725901 7.780913207 7.816096803 7.691345698 86569205 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia sp. CcI3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 7.079818519 7.454648057 86569172 fnr Stress Oxygen stress Frankia sp. CcI3 9.480532456 9.675366351 9.727940353 8.766662906 9.124146002 9.40783196 9.685698329 8.917971917 9.624310838 9.401990508 9.543472321 9.638089145 148502922 tfdA Organic Remediation Aromatics Chlorinated aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.529951834 8.402366359 7.715017685 8.004724949 8.268392463 8.512592366 8.247875168 8.354919165 8.268484391 8.023427243 8.14911251 220720983 nagI Organic Remediation Aromatics Aromatic carboxylic acid Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 9.187541689 9.080930006 9.24310652 8.643165018 8.653426613 8.668612969 8.349446096 8.668641975 8.528777692 8.830893154 146395589 gyrB other category gyrB Geobacter uraniireducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 8.348864811 8.103403308 8.42510315 8.107089551 7.938553856 7.881568253 7.919330977 7.532071788 7.987748952 7.747253913 7.664049301 7.812382128 86356552 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 9.384806787 9.483768564 9.172693361 8.990699903 9.565530783 9.775930491 9.843158088 9.756957844 9.48722841 9.745157492 9.931984122 9.793385675 167350237 4HBH Organic Remediation Aromatics BTEX and related aromatics Caulobacter sp. K31 9.047196377 8.999431388 9.366939874 9.352070807 9.212662145 8.843992886 9.202598546 9.675207798 9.20128461 9.272322149 8.8097227 9.233042805 226946860 pstB Stress Phosphate limitation Azotobacter vinelandii DJ 8.342500731 8.304019024 8.43011473 8.371493349 8.251267942 7.834692807 8.385578962 8.035333623 8.1709208 8.164175107 8.197596205 134150590 linB Organic Remediation Pesticides related compound Mycobacterium tuberculosis str. Haarlem superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 8.054835413 8.215145399 8.115166103 8.244255501 8.18205634 8.022948481 8.414344365 8.364081399 8.525318542 8.357964265 8.188605417 282863332 sigma_24 Stress Sigma factors Streptomyces sp. ACTE superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 9.447042079 9.377956354 9.179501423 8.888316354 9.578605623 9.5350981 9.300990664 9.304558393 9.258995056 9.649831899 9.333842122 92441842 CopA Metal Resistance Copper Mycobacterium sp. KMS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.376199081 8.889289827 8.701925971 7.700316657 7.548565125 8.436489573 8.748580549 8.005458905 8.596756394 8.012811686 8.183625727 8.438303965 171278816 TerC Metal Resistance Tellurium Bifidobacterium dentium ATCC 27678 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium dentium; 8.479068893 8.345821021 8.375648488 8.763229931 8.460718237 8.094049348 8.86233709 8.316725474 8.298329079 8.421722944 8.778994735 90198261 pcc Carbon cycling Carbon fixation Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.154176138 8.272815196 8.188152796 8.492877394 8.867198572 8.75316392 8.565690032 8.371588645 7.958406317 134100617 pcpB Organic Remediation Herbicides related compound Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 9.058090578 9.072372851 9.152235754 8.59405136 8.577909883 8.512479361 8.453324248 8.529714931 8.584298619 8.537209737 8.657286782 8.816244858 21693597 phoB Stress Phosphate limitation Pseudomonas syringae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.990496932 8.406526036 8.506313926 8.929621272 9.127903963 8.958872855 8.655132566 9.285598604 8.535849776 9.007355004 9.097090864 9.374123946 119879899 cellobiase Carbon cycling Carbon degradation Cellulose Salinispora arenicola CNS205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 8.872457707 8.52468332 8.686883181 8.37373405 8.068062853 8.490778469 8.446552921 8.770589872 8.455493665 8.422021582 8.356987839 188586226 nitA Organic Remediation Aromatics Other aromatics Natranaerobius thermophilus JW/NM-WN-LF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Natranaerobiales;family:Natranaerobiaceae;genus:Natranaerobius;species:Natranaerobius thermophilus; 8.805362343 8.695622958 8.945853488 8.003095937 7.920493454 7.904972643 7.570965618 7.180793907 8.052838288 7.795235093 7.813729819 8.186362368 148252823 trzN Organic Remediation Herbicides related compound Bradyrhizobium sp. BTAi1 8.111731628 8.220347323 7.406756678 7.709724315 7.858177689 7.991266182 7.170815391 7.481673649 7.34375913 7.487355451 110823964 TerD Metal Resistance Tellurium Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.640264741 8.518676685 8.575813004 8.681409142 8.615953698 8.718339102 8.282111795 8.814210049 8.40845949 8.641019466 8.772994875 8.504253159 6689528 metC Metal Resistance Mercury Xanthomonas campestris superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas; 8.024337289 8.06431529 8.159847519 7.867576532 7.655311861 8.13358366 7.951611921 8.176082835 8.00079533 7.992031551 7.599337239 161389594 pstB Stress Phosphate limitation Phaeobacter gallaeciensis BS107 9.18577921 9.283789901 9.220650192 9.540059753 8.950299578 9.066707061 8.738889307 9.231415427 8.573363078 9.189062398 9.359502898 9.072059542 146407643 nhh Organic Remediation Aromatics Nitoaromatics Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.486733233 8.528418404 8.262461169 8.182474333 8.261918975 8.556371099 8.50398385 8.410464547 8.398662311 8.058744658 8.465222654 8.207268951 118502668 narI Stress Oxygen limitation Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 8.477813157 8.24311558 8.031483654 7.926105173 7.72436043 8.035517174 7.936556954 8.078404198 7.86678858 7.964295402 85689356 sigma_24 Stress Sigma factors Erythrobacter sp. NAP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 10.32067964 10.37718066 10.19423188 9.857974106 9.654225679 9.506979131 9.817987421 9.580782793 9.887165676 9.943058585 10.14631336 9.727586286 255268780 ahpC Stress Oxygen stress Bryantella formatexigens DSM 14469 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;species:Bryantella formatexigens; 9.307158297 9.279779566 9.164453381 8.828630319 8.941408404 9.077031143 9.245984116 9.052682304 9.400563398 8.92549103 9.079311845 8.994831138 168805058 aoxB Metal Resistance Arsenic Thiomonas sp. WJ68 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas; 8.42311806 8.433282324 8.463996941 8.059222311 7.689611298 7.885231877 7.919173326 7.864402957 8.243387419 7.827667075 7.697543471 7.744587638 82568121 gyrB other category gyrB Thermoactinomyces sp. MBIC08001 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Thermoactinomycetaceae;genus:Mechercharimyces; 8.47003845 8.158456177 8.543790053 7.98181365 7.575925223 7.622045742 7.458250194 7.45385396 7.943336321 7.460874555 7.633676435 7.892287693 269837239 sigma_70 Stress Sigma factors Sphaerobacter thermophilus DSM 20745 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 8.976814103 9.177188893 8.812673808 8.358477535 9.350471255 9.295459013 9.422997864 9.072503088 9.280542573 9.308808259 9.192048088 198404181 rd Organic Remediation Chlorinated solvents Dehalobacter sp. WL superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Dehalobacter; 7.556668678 7.423171708 89210693 amyA Carbon cycling Carbon degradation Starch Halothermothrix orenii H 168 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Halanaerobiales;family:Halanaerobiaceae;genus:Halothermothrix;species:Halothermothrix orenii; 8.526985182 8.300576298 8.285553169 7.860248312 7.823215109 7.83266603 7.768768548 7.955558533 7.753323329 7.794800338 8.107301867 152059 pcc Carbon cycling Carbon fixation Rhodococcus erythropolis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7.612171029 7.406954632 7.595626435 7.511917774 7.449991195 8.096180602 7.182545634 7.461073709 7.488294978 157846118 AceB Carbon cycling Carbon degradation others Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 10.90259602 10.20790092 10.56459256 9.397494425 9.7228338 9.585070155 9.888457901 9.317708652 9.123598724 9.441553592 9.191654951 9.514549079 83758157 pstB Stress Phosphate limitation Salinibacter ruber DSM 13855 8.504138287 8.619801097 8.626417097 8.147381475 8.110745097 8.356942061 8.299032921 8.212281498 8.404259975 8.178032997 8.197915016 8.337510116 197696888 TerC Metal Resistance Tellurium Streptomyces sp. SPB74 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.87008051 8.481214632 8.831659607 8.62438894 8.470695703 9.051429533 8.761193234 8.509282402 8.692145911 8.673890417 8.485685776 145216441 alkB Organic Remediation Other Hydrocarbons Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.842662305 8.956237428 8.686988074 8.756450893 8.726981567 8.48135392 8.894359662 8.736136799 8.551217401 8.619249598 8.650058949 8.708870924 92012039 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bacillus amyloliquefaciens FZB42 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 8.208455209 7.801416148 8.203769823 7.448220312 7.310029706 7.858656255 76058309 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.177844591 8.428834243 8.112226831 8.510126182 8.442119622 8.21339125 8.376805558 8.31584444 7.939878523 8.082206968 8.119805531 8.142452338 218885607 Tet Antibiotic resistance other Desulfovibrio vulgaris str. 'Miyazaki F' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 9.631973584 9.692199729 9.538341066 9.039764732 9.101229808 9.175017995 9.683359026 9.209629903 9.643626635 9.097170197 9.182190932 9.071471515 91783709 nahA Organic Remediation Aromatics Polycyclic aromatics Burkholderia xenovorans LB400 8.482005115 8.234686287 8.723902469 8.096775328 8.359295913 8.373998675 8.456300113 8.335364356 8.452997907 8.16842807 8.345112941 8.130732306 254283329 AceB Carbon cycling Carbon degradation others gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 9.118148714 8.864773996 9.208033905 9.14464389 8.642485403 8.548392456 8.426930165 8.538103874 8.497528862 8.519539435 8.627510135 256688381 cap virulence capsule Kytococcus sedentarius DSM 20547 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermacoccaceae;genus:Kytococcus;species:Kytococcus sedentarius; 9.522381688 9.429851482 9.37718899 9.246353933 9.078764072 8.764799612 8.903200392 9.28233811 8.84544675 9.11974303 8.994566512 9.210570442 260216268 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Cronobacter turicensis z3032 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter turicensis; 9.203301451 9.120413242 9.155853155 8.602417078 8.672848309 8.647837309 8.770262306 8.562580569 8.765418473 8.678723425 8.628757472 9.0228528 146282618 cytochrome Energy process Energy process Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 8.552626968 8.975849117 8.892753687 8.210273774 8.097107034 8.42358862 8.330569329 7.950492986 8.428697513 8.108973826 8.241630638 8.533209742 111152950 TerD Metal Resistance Tellurium Frankia alni ACN14a 10.22404515 10.28753773 10.43440471 9.773750035 9.747337989 9.573988509 9.605702907 9.962780899 9.747641518 10.09383896 10.07174859 10.1262819 115423778 grpE Stress Heat shock Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 8.836490784 8.558682656 8.89713566 8.51743924 8.428333847 8.265000964 8.162112545 8.322765296 8.594877588 8.192470158 8.06464908 8.497042222 197758194 nagG Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 9.386751235 9.291694153 9.21896274 9.005057428 8.967059142 9.028689996 9.018483369 9.332600082 8.809617815 9.318521128 9.219405417 9.175853427 124266965 pimF Organic Remediation Aromatics Aromatic carboxylic acid Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 8.599171092 8.528605484 8.973642428 8.767906233 8.882478089 8.634638446 8.36347797 8.989489728 8.462040312 8.774555077 8.999989961 8.266685133 256379342 endochitinase Carbon cycling Carbon degradation Chitin Actinosynnema mirum DSM 43827 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinosynnemataceae;genus:Actinosynnema;species:Actinosynnema mirum; 8.287734029 8.346718816 8.220985458 8.340255243 8.082310113 8.432923484 8.454825692 8.264292337 8.343099066 8.52583902 8.323681314 255049397 iro virulence Neisseria sicca ATCC 29256 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria sicca; 7.475246971 7.609836991 7.376389794 7.502535796 7.331723679 7.728330672 229763356 glnA Stress Nitrogen limitation Streptosporangium roseum DSM 43021 8.200228908 8.545725752 8.374141268 8.186015032 8.352367509 8.002052628 8.370490309 8.654711681 8.468618149 8.657259172 8.479093939 8.320527338 118746907 rd Organic Remediation Chlorinated solvents Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 8.334324743 8.27966744 8.583053014 7.979380058 7.815688773 7.871613768 7.705367989 7.352391461 7.702509937 7.49871335 8.107364773 161786168 mauAB Organic Remediation Herbicides related compound Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 8.69651968 8.461358166 8.422531008 8.500912356 8.249848307 8.016636966 8.224836945 8.605195984 8.520269179 8.57499254 8.38675288 8.201289695 11139540 ppk Phosphorus Phosphorus utilization Mycobacterium ulcerans superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 10.00190721 10.01033837 10.14594786 9.08416271 9.380323938 9.49900569 9.480153282 9.324511139 9.63627626 9.360487881 9.459192314 9.58595506 227823476 MFS_antibiotic Antibiotic resistance transporter Rhizobium sp. NGR234 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 9.179883145 8.593306139 8.66975073 8.638644075 8.672726326 8.431471241 8.811796502 8.672487248 8.486901725 8.755565441 8.413756613 8.599636672 84779128 SMR_antibiotics Antibiotic resistance transporter Sodalis glossinidius str. 'morsitans' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Sodalis;species:Sodalis glossinidius; 8.629737677 8.332977444 8.979670686 8.10287689 7.757753507 8.586807804 8.325657882 8.498444247 8.389519556 8.462600964 7.852749606 283476729 fimbriae virulence fimbriae Erwinia pyrifoliae DSM 12163 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia pyrifoliae; 9.426426448 9.359947692 9.511027865 8.593165626 8.618236449 8.702072726 8.675861645 8.50302881 8.585670759 8.630108112 8.745070996 9.072306223 52631684 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.25135508 8.010165199 8.513077038 8.394154999 8.263154159 8.34915235 8.229815206 8.191674037 8.403417012 8.030616961 8.056591423 29652472 narG Nitrogen Denitrification uncultured bacterium 7.990422487 7.962684495 7.683507277 7.787836985 7.976748667 7.758494386 7.756017124 8.097756696 8.076517762 7.984408193 7.970283287 240864774 sigma_70 Stress Sigma factors Ralstonia pickettii 12D 8.809423223 8.665891366 8.674688954 8.355225353 8.294307122 8.308202257 8.602265164 8.53888499 8.572755635 8.37646544 8.308428693 8.773084739 63255735 iro virulence Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 8.455960405 8.265246602 8.376445864 8.186516606 7.973133342 7.906281049 8.311205751 8.481091298 8.104062215 8.127402057 8.299283031 89143188 gyrB other category gyrB Microbacterium keratanolyticum superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium; 9.700892684 9.751400346 9.795729621 8.923569304 9.299540006 9.481923081 8.966787662 9.795643434 9.22630811 9.340337945 9.387867376 115361309 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Burkholderia cepacia AMMD superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 8.237133294 8.025472669 8.432331172 8.137986706 7.881821872 7.847891272 7.747341585 7.990830141 8.233522536 7.847915774 7.314536446 7.725450371 115366286 TerC Metal Resistance Tellurium Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 9.191914216 9.101401541 9.100389268 8.244692418 8.229688746 8.313344484 8.247709565 7.820599502 8.493044868 8.378244939 8.359882941 8.590939146 116872325 srt virulence surface protein Listeria welshimeri serovar 6b str. SLCC5334 7.980816482 8.004167837 8.206722353 7.455266859 7.132326155 7.237395539 6.918636743 7.315084712 151281192 nitro Organic Remediation Others Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 8.506758616 8.321435014 8.686723528 8.234266142 8.377112944 8.662486169 8.550585829 8.55356864 8.492294065 8.212725223 8.6368099 8.357112448 152965603 glnA Stress Nitrogen limitation Kineococcus radiotolerans SRS30216 8.908799578 8.98961783 8.794766587 8.593949474 8.509762463 8.372923201 8.669268512 8.649187999 8.555467142 8.67500424 8.686431055 8.479515142 37519596 vanA Carbon cycling Carbon degradation Others Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 9.2939161 9.357950215 9.290055499 8.89693924 8.820123639 8.749640625 8.649581885 8.719121167 8.647815859 8.758499418 8.7567883 8.98726612 6456729 B_lactamase_B Antibiotic resistance Beta-lactamases Serratia fonticola 8.618478061 8.348256017 8.704812431 7.841087811 7.584870325 7.740475718 7.353212912 7.324881032 7.756738636 7.63066481 7.517442838 7.744062484 110283656 AceA Carbon cycling Carbon degradation others Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 8.351179211 8.107453808 8.082920375 7.389969607 7.231441705 7.454443932 7.301279153 7.228747978 7.201720442 110633483 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 9.002411906 8.956424711 9.000237332 8.300099213 8.575458315 8.503571709 8.083604939 8.040268156 8.46777876 197934254 endoglucanase Carbon cycling Carbon degradation Cellulose Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 8.427661779 8.692123628 8.629039165 8.61118872 8.757557193 8.766202574 8.80141657 9.068346742 8.84711872 9.198251467 9.044410447 9.011722348 157405194 nhh Organic Remediation Aromatics Nitoaromatics Methylobacterium populi BJ001 8.124523108 8.373456297 8.658877329 7.735131483 7.643117882 7.48467055 8.214898127 7.562708033 8.425491169 7.672125635 7.406540691 7.705885249 93356493 proO Organic Remediation Aromatics Other aromatics Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 9.241186155 9.111748891 9.15255483 9.203367153 9.390397333 9.113357173 9.017129087 9.396523966 9.22890663 9.303106944 9.211101467 9.138848196 88799477 ahpF Stress Oxygen stress Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 9.170593421 9.064144684 8.658254245 8.534737376 8.309180066 8.205066577 8.127369831 8.20910478 8.136945911 8.334827267 8.809026984 16132294 AceA Carbon cycling Carbon degradation others Coccidioides immitis superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides; 8.300690332 8.680530574 8.589281953 7.969237939 8.36948653 8.347591477 8.427604005 7.077299632 8.453385447 7.675498461 7.917862475 7.824739823 77969011 TerZ Metal Resistance Tellurium Burkholderia sp. 383 8.316076495 8.453828051 8.002119849 7.959241509 7.874250146 7.832975361 7.933936016 8.025582215 8.253741585 8.113888188 7.981479015 8.021969961 133754625 phenol_oxidase Carbon cycling Carbon degradation Lignin Neurospora sp. A004 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora; 8.905019093 8.794117312 8.51293033 8.86710817 8.46006938 8.148447786 8.689841805 8.630030037 8.67748061 8.458818497 8.486209458 8.372152873 89067885 pulA Carbon cycling Carbon degradation Starch Oceanicola granulosus HTCC2516 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 8.357229092 8.179436133 8.266608243 8.275242557 8.430613974 8.775283429 8.485095925 8.405457498 8.323909725 8.449564798 86607670 phn Organic Remediation Herbicides related compound Synechococcus sp. JA-2-3B'a(2-13) superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.792777128 8.394521988 8.945772879 7.61314093 7.822478886 8.326081729 8.356424601 7.661315751 8.651584125 7.908762955 8.067346553 8.172013553 169763148 pheA Organic Remediation Aromatics Other aromatics Aspergillus oryzae RIB40 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus oryzae; 9.688884908 9.521986578 8.861997133 8.220227275 8.425638066 8.870269807 8.576287245 8.26858612 8.774618382 8.991589115 83721555 vanA Carbon cycling Carbon degradation Others Burkholderia thailandensis E264 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 8.469558282 8.365294362 8.377456603 8.292819709 8.26235028 8.145359784 8.3158918 8.419927536 8.171506816 8.429827896 8.028001179 161389811 CadA Metal Resistance Cadmium Phaeobacter gallaeciensis BS107 8.942025505 8.824301194 8.640947359 8.417213627 8.571170133 8.732416501 8.238370213 8.617140145 8.553198774 88781172 ppx Phosphorus Phosphorus utilization Polaribacter irgensii 23-P superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Polaribacter;species:Polaribacter irgensii; 8.662181207 8.042962399 8.530846581 8.273984369 8.39003211 7.9722366 7.85860235 8.090757949 8.260988139 8.226701919 7.711430184 158316224 CDH Carbon cycling Carbon degradation Cellulose Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 9.263519221 9.096412735 9.354194219 8.630226628 8.591742055 8.506757344 8.144549991 8.311104625 8.313206553 8.518076307 8.483430551 8.832787684 118473535 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 9.959738063 9.549734309 9.209364237 8.600338451 8.997939184 9.586386019 8.835021867 9.153956821 8.380083244 8.542599041 8.595303901 225178397 cda Carbon cycling Carbon degradation Starch Clostridium sp. M62/1 9.412826478 9.406172742 9.303114826 8.624144119 8.469328662 8.576903593 8.410636861 8.160255424 8.722606996 8.300290574 8.194030851 8.618931133 124260518 gyrB other category gyrB Methylibium petroleiphilum PM1 9.211568344 9.246693922 8.689935274 8.373962087 8.563401359 8.857604145 8.317165835 8.998983631 8.181490226 8.290244506 7.984719592 167358732 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.144263056 8.027889207 8.095917295 8.26595363 8.44868884 8.396574581 7.630379103 8.63976553 8.096700028 8.287624465 8.40324798 8.283728404 56809535 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.923433557 7.819225905 8.223759363 7.510202776 7.216768044 7.163852522 6.798381795 7.371901547 7.0072883 7.022233217 61587226 benAB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.904011402 8.702383042 8.694706001 9.203667766 9.102016602 8.811615593 9.018070818 9.495199262 8.965751669 9.45500219 9.136862625 9.254744281 258511872 pstB Stress Phosphate limitation Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 8.907496478 8.580704178 8.691925257 8.448689999 8.489476815 8.539481786 8.285378273 8.639050105 8.654972981 8.413136563 8.45191904 8.396261459 34017076 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 9.316765858 9.293933984 9.362989113 8.567551523 8.607828822 8.473792513 8.765845095 8.553434817 9.050010992 8.629418254 8.466759142 8.674621548 118040008 ALN Organic Remediation Others Burkholderia phytofirmans PsJN 8.416582291 8.649508672 8.272215345 7.507097045 7.743951711 7.873337635 7.727111054 7.663657514 8.056387629 33591786 bphA Organic Remediation Aromatics Polycyclic aromatics Bordetella pertussis Tohama I 9.051111042 8.756685527 8.004536509 7.94840993 8.209211643 8.216100282 8.052446116 8.19760641 8.324692196 8.652377493 8.623853746 220904110 hydrogenase Energy process Energy process Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 9.34417698 9.082785727 8.526988356 8.592688875 8.498509199 37726850 dsrB Sulphur sulfite reductase uncultured prokaryote 8.287803521 8.427179581 8.303589091 8.124920948 8.465529755 8.652925705 8.686408894 8.961422968 8.780519085 8.990498626 8.959809235 8.783472467 150395240 grpE Stress Heat shock Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 9.372177267 8.989078457 9.113888999 8.693597927 8.890298992 8.725713254 8.544674598 9.009825148 8.363492149 8.89847541 9.00612275 9.163724338 148259562 glnA Stress Nitrogen limitation Acidiphilium cryptum JF-5 9.991354665 10.13849369 8.940371793 9.136404989 9.153537882 9.507560334 9.217314029 9.424994342 9.269246837 9.381611067 9.381189352 126460036 APS_AprA Sulphur adenylylsulfate reductase Pyrobaculum calidifontis JCM 11548 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum calidifontis; 8.152631185 8.742960302 8.492094265 9.06479179 9.044197676 8.790273098 8.908638038 9.025399485 8.430152418 9.00833099 8.873744456 8.30309269 15788837 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.568436126 8.859486056 7.869867258 8.213205906 8.338978579 8.127681848 8.408903168 8.483480204 8.551840169 8.617997502 229815332 obgE Stress Radiation stress Collinsella intestinalis DSM 13280 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella intestinalis; 8.377225864 8.367227295 8.552332588 8.71379409 8.589370511 8.275074461 8.521411614 8.988624024 8.844175761 8.833344966 8.494240604 8.617748517 114316333 iro virulence Granulibacter bethesdensis CGDNIH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 8.841955008 8.774382336 8.888010906 7.934630776 7.732577757 8.089354895 7.824073563 7.660704161 8.187756438 7.631177878 7.983617421 8.12602366 124260742 rubisco Carbon cycling Carbon fixation Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 9.454293943 9.555630935 9.186597193 8.641269691 9.350109391 9.43971078 9.830860269 9.495361877 9.654402279 9.155581688 9.045576131 9.191793936 121555348 ChrA Metal Resistance Chromium Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 8.600915381 8.425640628 8.532033354 8.300263228 8.404945332 8.757612284 7.014907979 8.037709823 7.949752747 8.283409342 18148436 endoglucanase Carbon cycling Carbon degradation Cellulose Clostridium thermocellum superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 8.69413448 8.463313878 8.62929731 7.812046093 8.225433847 8.274161329 8.312769568 8.243323283 8.112088254 8.181590215 8.337273101 8.37651971 89358235 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.79802582 8.809710248 8.644868519 8.539671556 8.506885598 8.365713429 8.13537918 8.505069242 8.460374586 8.448575867 8.37805696 8.453001121 162148866 pstB Stress Phosphate limitation Gluconacetobacter diazotrophicus PAl 5 10.2873483 10.25870639 9.516210294 9.848631585 9.876424027 10.41672546 90336970 cap virulence capsule Aurantimonas manganoxydans SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 8.416145663 8.636850504 8.559103378 7.867882169 8.126104528 8.247762982 8.157626782 8.469523049 89344921 rubisco Carbon cycling Carbon fixation Rhodoferax ferrireducens DSM 15236 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 8.606657145 8.612186596 8.754550456 8.656605187 8.546672423 8.325160888 8.12929101 8.590479123 8.554792296 8.255440319 8.165099559 8.404946866 149277880 arsM Metal Resistance Arsenic Pedobacter sp. BAL39 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter; 8.1459469 7.940193919 8.34698726 8.098834059 7.441910528 8.050822273 7.916340309 8.007265159 8.239314726 7.907866937 7.738902316 111116458 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida 8.57234032 8.734897789 8.745944633 8.370848742 8.275700606 8.423620461 8.515105875 8.502044704 8.481997327 8.589098731 8.53023501 8.64944749 134094017 dehH Organic Remediation Chlorinated solvents Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 8.128719544 8.220161132 8.151549296 7.864944019 8.419881621 8.132381983 8.368058493 8.313059894 241879141 fnr Stress Oxygen stress Desulfovibrio vulgaris RCH1 8.769645619 8.971096939 8.876817728 9.204189906 9.17715854 9.07172329 9.062783008 9.330990235 8.959342622 9.307670268 9.199080962 8.70611035 227978775 B_lactamase_C Antibiotic resistance Beta-lactamases Tsukamurella paurometabola DSM 20162 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 8.775395001 8.442410903 8.312214107 8.282208182 8.330319541 8.663828718 8.826659057 8.814920497 8.917091742 8.798419584 90106706 pcc Carbon cycling Carbon fixation Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.691199691 8.714853128 9.329217538 9.252727142 9.064437854 8.632153462 9.384052829 8.565190494 8.97085096 9.0209211 9.359002358 167770669 obgE Stress Radiation stress Anaerotruncus colihominis DSM 17241 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Anaerotruncus;species:Anaerotruncus colihominis; 8.956677859 8.786404203 8.816961886 8.563495832 8.412805616 8.288835096 8.219267562 7.988467349 8.209102926 8.248306872 8.286905015 8.242986224 46307838 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.163733311 8.082451189 7.757818777 7.999395352 7.994006906 8.139519361 7.924811691 8.100230663 7.72862214 8.139711065 7.8326597 120325254 trzN Organic Remediation Herbicides related compound Marinobacter aquaeolei VT8 8.391392421 8.359900184 8.66304269 8.18244905 7.930082505 7.604408001 7.659134156 7.526629208 7.858963322 7.909205115 7.621973673 8.053112347 170658049 SmtA Metal Resistance Miscellaneous Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 8.380462748 8.392304368 7.97915868 8.221840615 8.254292101 7.956869513 8.076873523 8.401567677 8.269848601 8.273191339 8.062265271 8.440001904 77970624 nagI Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.779636853 8.475327885 8.173347326 8.597680573 8.565599696 8.281945033 8.764618923 8.551933526 8.675934395 8.614627857 8.684397966 8.470246847 258653258 amyA Carbon cycling Carbon degradation Starch Nakamurella multipartita DSM 44233 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 8.253012013 8.147857462 8.286488711 8.591323609 8.461498943 8.160239323 8.553775678 8.486691763 8.451084494 8.400124819 8.235948276 8.136818649 27381627 ChrA Metal Resistance Chromium Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.253382098 8.210727574 8.783155874 8.605199476 8.735089195 8.846590143 8.95538417 8.983473707 9.12292115 9.184847351 9.361843612 9.0716295 212696749 ChrA Metal Resistance Chromium Anaerococcus hydrogenalis DSM 7454 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Anaerococcus;species:Anaerococcus hydrogenalis; 8.528711593 8.724787653 7.978694072 7.80150194 7.947289514 7.629093688 7.683615109 7.980663996 7.595897066 7.607681945 8.047480394 226318112 AceA Carbon cycling Carbon degradation others Deinococcus deserti VCD115 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 8.356431979 8.420473818 8.353241583 8.389014738 8.099284856 8.151175048 8.042654851 8.267248637 8.312905472 8.10222721 8.316370555 8.291739035 222055104 pstB Stress Phosphate limitation Geobacter sp. FRC-32 8.74011422 8.911038521 8.896339843 8.154820361 8.204808655 8.619838738 8.27597422 8.352816463 8.21844699 8.372653751 8.320011757 171689570 pheA Organic Remediation Aromatics Other aromatics Podospora anserina superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 8.347078728 8.414763829 8.439195254 7.640360765 7.882341591 8.172981852 8.239515297 8.109177834 8.420822982 7.896794836 8.108050197 7.890662711 157316835 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 9.356368265 9.353009267 9.332882921 8.719027683 8.662858909 8.69475417 8.406978751 8.296410919 8.300317203 8.330950239 8.829369862 23012454 trzN Organic Remediation Herbicides related compound Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 8.734805821 8.919081195 8.261343052 8.503880937 8.619772866 9.055313994 8.982046009 8.821653055 8.944233953 8.897838873 8.81039514 8.997808533 182413666 sigma_24 Stress Sigma factors Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 8.6200038 8.811526609 8.823101562 8.33978163 8.411258788 8.208605303 8.12012631 8.303534047 8.528078531 8.044734425 8.033052048 8.190237557 70984757 nmoA Organic Remediation Aromatics Nitoaromatics Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 8.711285069 8.81819185 8.730428982 8.442691236 8.443600065 8.340835721 8.179840292 8.448542413 8.249195809 8.051645467 8.273255491 8.557650156 118580857 fnr Stress Oxygen stress Pelobacter propionicus DSM 2379 8.982442614 8.295512207 8.846266655 7.882884199 7.824804227 8.142297948 8.020725208 7.511304655 8.389835391 7.799591071 7.672919951 8.064429319 25028373 oxyR Stress Oxygen stress Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 8.892002088 9.114191711 8.837636899 8.492975716 8.396884448 8.197240734 8.158830378 8.408330285 8.228737473 8.301806454 8.323746375 8.51230605 34496390 pstB Stress Phosphate limitation Chromobacterium violaceum ATCC 12472 9.367643941 9.775662775 9.469695184 8.950871666 9.392552056 9.623176979 9.91580732 9.237550533 9.726470399 9.018089312 9.341577009 9.167822005 227342473 xylA Carbon cycling Carbon degradation Hemicellulose Rhizobium sp. NGR234 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 8.158559345 8.020799518 8.464747777 7.690220615 7.692782249 7.587917367 7.507793014 7.74080798 7.908871482 7.65522975 7.64740971 72121176 HBH Organic Remediation Aromatics BTEX and related aromatics Ralstonia eutropha JMP134 10.0782667 10.20336949 10.45478883 8.704890064 9.10647213 8.824235565 9.313549489 9.153473801 73537680 mdlB Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 9.066440491 9.074228744 8.904969514 8.434410122 9.087667329 9.620659498 9.169851812 9.543595804 9.004355456 8.949702297 9.223173554 77019931 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus erythropolis PR4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 8.782432614 8.702158436 8.01333332 8.232728467 8.452403249 8.876676005 8.569333335 8.709335276 8.523972745 8.378703797 8.428216718 67782665 dsrA Sulphur sulfite reductase Chlorobium limicola DSM 245 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium limicola; 8.331705501 7.933848619 7.84934501 7.409869986 7.344404948 7.611866159 7.394625381 7.781437574 46307974 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.831152307 8.849038876 8.908623757 8.66426176 8.652437525 8.533164239 8.189586949 8.164272463 8.458194357 8.640652626 8.412185612 121533293 sigma_24 Stress Sigma factors Thermosinus carboxydivorans Nor1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Thermosinus;species:Thermosinus carboxydivorans; 9.004708141 8.429040874 8.758718859 8.409768582 8.265010978 8.401377415 8.251186803 8.009172061 7.935067278 8.059321098 8.329509585 7.976653128 113527931 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.587788078 8.510357349 8.723332043 8.399318324 8.491210231 8.551482028 8.305783152 8.653570524 8.658447465 8.682979316 8.135289905 133914530 pimF Organic Remediation Aromatics Aromatic carboxylic acid Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 8.164969279 8.298602544 7.623789053 8.343403857 8.206325855 8.192543478 8.112266907 8.344450923 8.289613263 224535455 pstB Stress Phosphate limitation Bacteroides cellulosilyticus DSM 14838 8.998189222 8.934187247 8.946304765 8.444041928 8.486436894 8.380838156 8.509339177 8.602022067 8.487444824 8.548547886 8.400338391 8.587519854 170653216 nitA Organic Remediation Aromatics Other aromatics Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 8.596395815 8.610298496 8.533389798 8.506283058 8.623110698 8.343671905 8.614953289 8.591661595 8.674571954 8.753291102 8.500272276 8.544365973 21673213 SMR_antibiotics Antibiotic resistance transporter Chlorobium tepidum TLS superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 10.28270339 10.29272671 10.57395672 9.584995481 9.610731188 9.602828573 9.758906254 9.572368446 10.01749478 9.598278778 9.863249626 9.976112346 54023006 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 8.161110267 8.595645165 7.996021679 8.054864576 8.180447959 8.202899023 8.689879034 8.25287212 8.615541817 8.754129964 8.336841706 259166319 phoB Stress Phosphate limitation Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 10.12211434 10.05199239 10.17846586 9.457312897 8.814395148 9.331146021 9.266444149 9.073715508 9.14431672 9.285497175 9.26939199 9.60932956 38194122 Xamo Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 9.131833893 9.027094653 9.285776849 8.394708054 8.236874811 8.327732787 8.196112011 8.075479886 8.38423237 8.227879322 8.25726655 8.563633023 189188768 nagG Organic Remediation Aromatics Aromatic carboxylic acid Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7.365948037 7.54343366 7.916531471 8.143101741 7.536478615 7.953470289 7.645916383 7.766589247 7.747241684 162285454 pcpE Organic Remediation Herbicides related compound Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 8.451434124 8.633523935 8.651302473 8.035614623 8.120610606 8.059129819 7.857705409 8.1096497 8.740847174 8.227252194 8.036568557 8.199901813 27353315 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.205008813 8.291329107 7.49758587 7.624174976 7.45639536 7.446089476 7.753396978 7.87215815 7.532425217 7.50296826 7.769503665 70992365 pheA Organic Remediation Aromatics Other aromatics Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 8.414475846 8.324937834 8.324481361 7.795537608 7.482781002 7.874025631 7.533918588 7.473084469 7.675426918 7.653315246 7.426230716 7.794695299 213968723 atzA Organic Remediation Herbicides related compound Pseudomonas syringae pv. tomato T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 8.359108157 8.144587202 8.678259297 8.690682348 8.618564841 8.264506484 8.964670194 8.636426632 8.562310594 8.685557771 26986207 sox Sulphur Sulphur oxidation Pelodictyon phaeoclathratiforme superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon; 10.94155747 10.84313678 10.84597807 9.802808948 9.820498502 9.780099449 9.721577558 9.13135225 9.867742314 10.01038814 10.3390864 10.23958006 83855231 pstB Stress Phosphate limitation Sulfitobacter sp. NAS-14.1 9.087720642 8.831375711 9.095871673 8.94062777 8.900635854 8.398993537 8.861527344 9.417145082 8.740707055 9.285675101 8.996903895 9.203557282 227902411 ahpF Stress Oxygen stress Finegoldia magna ATCC 53516 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Finegoldia;species:Finegoldia magna; 7.018618706 6.936045979 220932303 ArsC Metal Resistance Arsenic Halothermothrix orenii H 168 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Halanaerobiales;family:Halanaerobiaceae;genus:Halothermothrix;species:Halothermothrix orenii; 9.157119756 9.132116863 9.239118809 8.380142625 8.208505896 8.253157094 8.038127605 7.911357675 8.363013794 8.16741438 8.216494922 8.491442437 255273256 sigma_24 Stress Sigma factors Hyphomicrobium denitrificans ATCC 51888 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 8.831400301 9.357162933 9.184542304 8.711355334 9.26893615 9.6400082 9.268776407 9.449008923 9.129043223 9.292302868 9.491496043 77973654 CadA Metal Resistance Cadmium Yersinia frederiksenii ATCC 33641 9.29012882 9.106718222 7.998817246 8.678863497 8.296643541 9.405732263 8.401771437 8.340670516 115607457 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 9.065309294 9.04724383 9.07577931 7.98958236 8.470316218 8.716639575 8.768919395 7.383092729 8.946952 7.986512366 8.141018283 8.289891555 149122711 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 8.656008468 8.274366851 8.653269964 8.33376481 8.213059395 7.969994452 8.168232603 8.483308957 8.672759456 8.437664897 8.190877622 8.180564342 259022294 glnA Stress Nitrogen limitation Rhodobacter sp. SW2 10.44643424 10.18713022 10.29068472 9.695566077 9.794763587 9.862486824 9.654638941 9.554661263 10.23302376 9.961497273 10.19007766 10.15386315 109457038 pcaG Organic Remediation Aromatics Other aromatics Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 8.573449294 8.827553716 8.932355901 7.835850003 8.02723507 8.484028688 8.609609204 8.099378666 8.29885597 8.095354823 8.045050126 8.469655975 94495079 MFS_antibiotic Antibiotic resistance transporter Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 10.15018359 10.04366123 10.04905051 10.09489594 10.27717133 10.03482737 10.14265356 10.28711664 10.0700233 10.25232341 10.27211813 9.794482831 126737842 phoB Stress Phosphate limitation Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.316776221 8.211347805 8.239532482 8.13902136 8.200749625 8.481120176 8.257779286 8.005198648 8.093139868 7.979494401 83590236 dmsA Organic Remediation Others Moorella thermoacetica ATCC 39073 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Moorella;species:Moorella thermoacetica; 9.397485056 8.965929601 8.991301824 9.384315049 9.154505424 8.752009304 9.542306699 9.418751843 9.605160519 9.047668185 9.023559931 9.004143066 77957884 CadA Metal Resistance Cadmium Yersinia bercovieri ATCC 43970 8.46128485 8.000425245 8.212188336 8.012908609 7.905915322 7.573927242 8.354445009 7.96601556 7.952850471 8.071161935 8.100018111 86557486 sigma_70 Stress Sigma factors Synechococcus sp. JA-2-3B'a(2-13) superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 9.634056068 9.653297921 9.33194834 8.338225875 8.538854241 9.047036855 8.496859339 9.232810841 8.585952628 8.717468609 93353268 TerC Metal Resistance Tellurium Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 7.669187408 7.903125774 7.677399531 7.428776801 8.078452039 7.899564763 7.956860456 7.815567301 7.722919102 149921995 phtA Organic Remediation Aromatics Aromatic carboxylic acid Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 8.318010335 8.205844284 8.628544719 8.472944552 8.658912535 8.323849043 8.476839835 8.213767838 8.309272407 8.277294425 8.054224037 71915004 endochitinase Carbon cycling Carbon degradation Chitin Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 8.34742496 8.17139102 8.161456134 8.251404747 8.090946313 7.883301545 7.939223172 8.015598486 8.328115953 7.847943728 7.809381014 7.863417901 240171887 pstB Stress Phosphate limitation Mycobacterium kansasii ATCC 12478 8.562515234 7.968087129 7.978584929 7.244623107 7.594288375 7.841210195 7.343826072 7.466505752 7.632154149 7.46635104 7.644347144 84393922 oxyR Stress Oxygen stress Vibrio splendidus 12B01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 8.506199954 8.54649376 8.644461838 8.177404451 7.792719184 7.951395498 8.05482805 7.99954099 8.245377078 7.811490037 7.840965576 8.090633629 114796459 DNA_polymerase_type_I Bacteria phage REPLICATION Bacteriophage LKA1 order:Caudovirales;family:Podoviridae;genus:phiKMV-like viruses; 8.526820963 8.765766915 8.705301251 8.168186651 8.197391348 8.20909052 8.188731931 8.329070061 8.411064003 8.542520936 8.482251284 219949485 fnr Stress Oxygen stress Methylobacterium nodulans ORS 2060 8.210388607 8.552988206 7.685025218 7.902514239 8.452849282 8.847172007 8.539314378 8.381281097 8.184445967 8.281429796 8.264280802 120406164 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.587685073 8.751511726 7.869887301 8.109099555 8.492886357 8.952279579 8.195931164 8.138194626 8.029389035 8.421285161 86568446 SMR_antibiotics Antibiotic resistance transporter Frankia sp. CcI3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.476621609 8.302487608 7.846128192 7.563428859 8.203098699 8.191722517 7.874487567 8.256089622 8.179281025 8.133688164 8.042488214 254364673 ureC Nitrogen Ammonification Mycobacterium tuberculosis str. Haarlem superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 9.277403645 8.890955742 9.276539022 8.565005391 8.519389839 8.450573643 8.180872342 8.48350257 8.507735914 8.536008483 8.470785887 8.677142304 90022378 dnaK Stress Heat shock Saccharophagus degradans 2-40 8.02299216 8.212702167 7.523740586 7.353399672 7.731699257 7.268048361 7.631802893 7.801741414 7.59211807 8.013173069 7.523962828 114737540 narI Stress Oxygen limitation Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 9.960085059 9.912860697 10.06388484 10.3170676 9.980164495 9.474099087 10.37976587 10.42169475 10.22636082 10.14612351 10.08112479 9.828969667 98977094 pcc Carbon cycling Carbon fixation Sphingopyxis alaskensis RB2256 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 7.570723713 7.451183363 7.430366844 7.064194186 7.293749942 7.615099645 7.699658957 7.29019655 7.241938661 91687663 nahA Organic Remediation Aromatics Polycyclic aromatics Burkholderia xenovorans LB400 8.577997329 8.645111366 8.534184926 8.348689607 8.375621588 8.406752501 8.456879651 8.529285773 8.570711102 8.442675198 8.4314694 8.430012655 220925098 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 8.826399663 8.904798687 8.884246129 8.941515605 9.088878348 8.906934107 8.921245413 9.276182482 8.631194386 9.300294894 9.083893018 8.977186333 226091416 sigma_24 Stress Sigma factors Gemmatimonas aurantiaca T-27 superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 8.676684643 8.501041633 8.532691488 8.251739376 8.924764681 8.922976645 8.697912772 9.000607388 9.016683323 8.98885526 8.759869199 84713304 pcpE Organic Remediation Herbicides related compound Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8.834152966 9.116120141 8.743763474 8.924462799 9.211706151 9.223490963 9.572342949 9.244961516 9.267246377 9.327451302 9.307285559 9.444789442 220721198 nagG Organic Remediation Aromatics Aromatic carboxylic acid Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 8.266808493 8.510819841 8.51623045 8.799464033 8.664314648 8.253531905 8.262865747 8.952480368 8.6721309 8.734859719 8.571145837 8.735866698 119897414 nahA Organic Remediation Aromatics Polycyclic aromatics Azoarcus sp. BH72 10.14420457 10.24018478 10.28671274 10.53977967 10.44634677 10.47650816 10.35905204 10.61941197 10.33663166 10.57569672 10.57987418 10.0363226 226094384 obgE Stress Radiation stress Brevibacillus brevis NBRC 100599 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus brevis; 9.239151516 9.23058252 9.196386372 8.864752097 8.667674388 9.034505253 8.39867229 8.311780581 8.529166147 8.479110121 8.957294548 90422148 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.085793042 8.436707988 8.020724068 8.152111567 8.442388846 8.481333607 8.153478128 8.383526939 8.025897269 8.213071317 8.160771079 87281077 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.796653549 8.560864732 8.483169143 8.579671595 8.361895404 8.613223778 8.615341102 8.409100832 8.815877147 8.61614684 8.849462222 63256412 pcc Carbon cycling Carbon fixation Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 8.255733261 8.205810476 7.592254489 7.656079345 7.32806881 6.814907162 7.363255677 7.74778664 7.292327259 7.282928936 7.313372 73763036 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.215142108 9.13414233 8.771434321 8.671048714 8.990887387 8.421741366 8.789759498 8.852047498 8.80199735 8.785889999 8.645326716 8.79629518 88819994 phoB Stress Phosphate limitation Pseudoalteromonas tunicata D2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas tunicata; 7.228182331 6.913936249 7.363085325 6.70417348 7.687704377 7.104453917 7.073483904 121999021 pilin virulence pilin Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 8.429395903 8.54033322 8.502411684 7.84174004 8.037457048 8.144389881 8.222624302 7.615020315 8.379433752 8.032372561 7.83151279 8.071466347 73534169 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 9.282139927 9.330619134 9.576838099 8.90070639 8.847556079 8.697972995 8.86071165 9.123049426 8.758994529 8.909703545 8.760378793 9.06348411 72121973 proV Stress Osmotic stress Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.19286307 8.217634301 7.779296087 8.014285574 7.763639815 8.286639123 7.450661821 8.597092826 7.460003903 7.230069393 7.833180686 133909384 cydB Stress Oxygen limitation Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 8.251192335 8.090670751 8.144919281 7.908441335 8.331489951 8.004209341 8.304452641 8.373409442 7.964373829 284052021 obgE Stress Radiation stress Arthrospira platensis str. Paraca superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira platensis; 8.433743878 8.647615681 8.626557587 7.750551281 7.830308626 7.945654615 8.006107178 7.529798272 8.040638868 7.734127777 7.548628671 7.935069039 161984776 contractile_tail_sheath_protein Bacteria phage STRUCTURAL Synechococcus cyanophage syn9 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 8.270937908 8.888455827 8.519618464 7.767748033 8.747267222 8.863091563 8.270898716 8.226254996 8.205736114 8.589936272 83953756 bclA Organic Remediation Aromatics Aromatic carboxylic acid Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 7.792245199 8.057499842 7.904441774 8.168956928 7.897378354 8.164305691 7.953729941 7.916443252 8.022831545 261209776 obgE Stress Radiation stress Vibrio sp. RC341 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 9.219219784 9.044460179 9.268071957 8.781192303 8.698562153 8.638536662 8.681356102 8.991752122 9.1121749 9.107661275 9.167038299 187735554 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Akkermansia muciniphila ATCC BAA-835 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Akkermansia;species:Akkermansia muciniphila; 8.828992701 8.940304432 9.317368091 8.53894044 8.496851948 8.714379204 8.365787965 8.443099096 7.860946133 8.286340604 8.502090294 8.770312583 182677824 Arylest Organic Remediation Aromatics Other aromatics Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 9.314794104 8.815615811 8.967544458 9.085036663 8.931527887 8.6931615 8.623691986 8.943428187 9.161073074 23492828 BADH Organic Remediation Aromatics Other aromatics Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 8.541230336 8.908972034 8.595663041 8.740578449 8.356589646 8.373562943 8.80884467 8.822344244 8.476505297 8.74415869 8.476584893 8.225125209 111020867 xylJ Organic Remediation Aromatics BTEX and related aromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.756724067 8.774784538 8.372321634 8.879011725 8.582963896 8.21196529 8.54568974 8.513429356 8.715730477 8.415262871 8.164947653 8.394496072 83651953 chnB Organic Remediation Other Hydrocarbons Burkholderia thailandensis E264 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 7.394698535 7.452531706 7.476941838 6.636260817 7.530094783 7.336807632 7.205490608 184195173 PobA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.289857176 8.144907236 8.261373438 8.197922275 7.895383341 7.926640602 8.485071775 8.198101174 8.138716653 7.908339538 7.904309321 119448330 pimF Organic Remediation Aromatics Aromatic carboxylic acid marine gamma proteobacterium HTCC2143 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.89155693 8.806882169 8.998770606 8.556836085 8.733649073 8.549146103 8.392811122 9.031300454 8.665152488 9.1792327 9.329706421 9.308924051 77465140 ArsC Metal Resistance Arsenic Rhodobacter sphaeroides 2.4.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 9.096164156 8.986689949 9.128754096 8.803037033 8.966762894 9.00219078 8.904890809 8.612747175 8.873905836 8.978528884 9.425572844 9.149597555 156529693 MFS_antibiotic Antibiotic resistance transporter Vibrio harveyi ATCC BAA-1116 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 8.032972489 7.931092928 8.391736762 7.522108128 7.224000515 7.096397436 7.207939199 7.164931077 7.42689016 7.032571103 7.173065012 7.296643504 170775785 pstB Stress Phosphate limitation Leptothrix cholodnii SP-6 9.54031158 9.664538893 9.803814454 9.868067639 9.868680963 9.43409458 9.508431417 10.1975783 9.523146103 9.833395414 9.539342797 9.89227908 20142095 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 8.034931053 7.776532579 7.965531393 7.563212938 7.608658192 7.47070837 7.009466352 7.537437618 7.73984189 7.688773562 7.603523541 7.768445739 115523078 sigma_70 Stress Sigma factors Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.276588074 8.500244794 8.415898153 8.2977392 8.180859415 8.107809087 7.529791666 7.946522627 8.041322389 7.878102513 7.998310032 7.981887528 86574581 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.944206976 9.067517343 8.750691241 8.723001119 8.421700689 8.605583788 9.003071229 8.562077749 8.666347217 8.617735812 8.694587555 8.45850018 113526718 benAB Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.57057167 8.552453509 8.617323351 8.409845108 8.357520276 8.463704195 8.244018465 8.482432225 8.534775944 8.343334431 8.239359216 8.308325167 73763090 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.649804313 8.249785256 8.131494788 8.246450224 8.129553397 8.216458367 7.604981652 7.861988575 8.330517182 7.636923576 8.032136197 7.713895457 218273129 TerD Metal Resistance Tellurium Roseburia intestinalis L1-82 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia intestinalis; 7.305419889 7.162701412 7.211557615 6.903134352 6.883300599 7.620564972 7.283398241 7.015427769 52785717 SMR_antibiotics Antibiotic resistance transporter Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 9.435450263 9.221102471 9.44898429 8.310708683 8.223853842 7.958984849 8.59848776 8.838236798 166860148 nmoA Organic Remediation Aromatics Nitoaromatics Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.707454204 8.535256587 8.487481908 8.334130352 8.050835372 8.327497526 8.304126118 8.241605137 8.046614981 8.242738065 8.030558745 209874700 AceB Carbon cycling Carbon degradation others Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 8.005632117 8.136258654 8.200874882 8.079575599 8.473362787 8.605280729 8.440058985 8.385570709 8.253047082 29466074 norB Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.585530135 7.252771627 7.505827081 7.506821161 7.389243125 7.951016811 7.34057083 7.514152136 146232455 silC Metal Resistance Silver Dichelobacter nodosus VCS1703A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Cardiobacteriales;family:Cardiobacteriaceae;genus:Dichelobacter;species:Dichelobacter nodosus; 9.426401009 9.061513626 9.304019142 8.813845866 8.810595507 8.913227214 8.583255247 9.067342872 8.847765133 9.002793644 9.198118412 8.868609813 99030579 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 8.644389103 8.632296208 7.94230997 8.164971975 8.302334026 8.145409551 8.057494722 8.213409938 8.319759644 8.455754828 88702186 pstA Stress Phosphate limitation Congregibacter litoralis KT71 8.070927588 7.997844201 7.575904264 7.580837753 7.584774242 7.100906351 7.461091976 7.807879454 7.485963213 7.380377043 7.471077276 196112375 mer Metal Resistance Mercury Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 9.175191839 9.073326414 9.383157947 8.770496291 8.977098746 8.804176589 8.82958187 8.981586066 9.021782215 8.971120383 8.979417613 9.019523339 24378476 proV Stress Osmotic stress Streptococcus mutans UA159 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus mutans; 8.735992832 9.074666053 9.409503131 9.314777233 9.122187201 8.822522101 9.067189142 9.49181296 9.183322747 9.360846679 8.785455474 9.368514812 266622690 ara Carbon cycling Carbon degradation Hemicellulose Clostridium hathewayi DSM 13479 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 8.636592866 8.520846749 8.583763314 8.230332519 8.208905554 8.076634538 7.875756502 7.884724774 8.206971129 192283217 CopA Metal Resistance Copper Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.600958919 7.852267296 8.489502451 8.638575091 8.243354738 8.16247218 8.412294437 8.491314163 8.42117391 8.408809239 8.416720981 8.268760608 46520007 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.106602236 8.292488501 8.52367558 7.927861184 7.807752852 7.483952311 7.547866043 7.6796707 8.15067972 7.733402756 7.653865373 7.871675195 206676746 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.549963784 7.527279506 7.356613609 7.059045204 7.32207803 7.707883483 7.258684367 7.467610415 7.397931221 186911820 AprA Sulphur adenylylsulfate reductase Candidatus Thiobios zoothamnicoli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Candidatus Thiobios; 7.901403901 7.967373147 8.029656085 7.538451629 7.287138917 7.565486046 7.057429264 6.811028284 7.799046422 7.525794207 7.38870692 56695679 pimF Organic Remediation Aromatics Aromatic carboxylic acid Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 9.140884019 9.346626855 9.004852637 8.645449098 8.634202319 9.275678998 9.079705832 8.632869952 9.194548934 9.022778507 9.32733272 193224376 pimF Organic Remediation Aromatics Aromatic carboxylic acid Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 9.064692976 8.919289128 8.891001192 8.879146296 8.766404634 8.581607145 8.96514263 9.124438615 9.039228414 9.178678229 8.815636268 8.908207859 56697784 chnB Organic Remediation Other Hydrocarbons Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 8.534292241 8.502328303 8.579331048 8.07069509 8.291020543 8.495575497 8.519120344 8.533582123 8.569027239 8.488291672 8.381160771 8.567594936 160428479 pstB Stress Phosphate limitation Clostridium phytofermentans ISDg 9.124401861 8.957921669 9.550602344 8.687198783 8.611111537 8.494467985 8.244901012 8.423540478 8.350515762 8.553477679 8.30224028 8.7740856 115526876 pstB Stress Phosphate limitation Rhodopseudomonas palustris BisA53 9.545621963 9.784704748 9.866657719 9.917492382 9.891037349 9.753338919 9.843055446 10.02013986 9.614943737 10.16615152 9.982260586 9.558767712 237758579 oxyR Stress Oxygen stress Corynebacterium kroppenstedtii DSM 44385 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium kroppenstedtii; 8.716661259 8.525105735 8.460723246 8.410264193 8.542968722 8.421472172 8.417657843 8.29650951 8.383820972 8.406072828 8.664476192 8.239590362 68536990 CadA Metal Resistance Cadmium Corynebacterium jeikeium K411 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 8.54208556 8.240926945 7.991319476 7.812231809 8.374252419 8.389371045 8.220794312 8.196393835 8.620082502 8.080799682 8.337976138 8.005154833 213583323 ZitB Metal Resistance Zinc Salmonella enterica subsp. enterica serovar Typhi str. E98-0664 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 7.384945166 7.794334928 7.829834703 7.642346227 7.926956954 8.031930065 8.110896678 8.180025168 8.007779477 223935160 sigma_24 Stress Sigma factors bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 8.627180458 8.512891636 8.490519638 7.761133997 7.851309138 8.005898997 7.717050361 7.405270306 7.939505308 7.677145538 7.836295489 157847427 sigma_24 Stress Sigma factors Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 8.05666404 7.964206799 8.053586269 6.862787738 6.576514564 7.039417497 14027562 MFS_antibiotic Antibiotic resistance transporter Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 8.219755348 8.285553499 8.358079706 8.294945009 8.226498245 7.973139819 8.455422503 8.300260997 8.262242819 8.099245822 8.132077002 8.005624053 77381501 pcaG Organic Remediation Aromatics Other aromatics Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.499238713 8.20255185 8.321927418 8.787316583 8.230635741 7.786556971 8.397129775 8.421560933 8.303176498 8.307160927 8.015869565 7.92418771 167589703 gyrB other category gyrB Burkholderia ubonensis Bu superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ubonensis; 8.356135182 8.286345367 8.300929967 7.712503104 7.653735382 7.628435584 7.429479142 7.457175638 7.809911291 7.661304864 7.600428137 7.847291649 169016205 amyA Carbon cycling Carbon degradation Starch Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 8.578214628 8.243382164 8.077562077 8.119156628 8.14255534 8.068440377 8.449903379 8.434590061 8.361434996 8.157463094 8.121034294 221738178 ArsC Metal Resistance Arsenic Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 9.735395094 9.442870393 9.725649226 9.840681524 9.45393666 9.166943366 10.25083055 9.865148918 207728409 iro virulence Ralstonia solanacearum MolK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 8.193561685 8.063943293 8.109514588 7.620306676 7.6460828 7.893052152 7.835041214 7.899773209 8.213908728 7.939630562 7.988101553 8.108527312 241214412 AceA Carbon cycling Carbon degradation others Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 8.593766424 8.666912795 8.671859006 8.168716856 8.25869793 8.307824122 8.250335731 8.638780089 8.57503526 8.355709813 8.19106911 166858377 iro virulence Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.871760091 8.968355241 8.872865981 8.250800104 8.317687518 8.426257199 8.857271261 8.275791403 8.890785672 8.317991081 8.178521361 8.436196001 240866669 fnr Stress Oxygen stress Ralstonia pickettii 12D 8.340684374 8.310212748 8.57185308 8.321651418 8.318651731 8.114560448 7.835294852 8.358313933 8.407657067 8.432771361 8.231477934 8.324714142 110612673 gyrB other category gyrB uncultured bacterium superkingdom:Bacteria; 7.955580125 8.01658386 8.095263395 7.580393655 7.867838106 7.844876613 7.331722907 7.910387172 7.972003537 7.761088407 7.683214966 7.610485963 146303969 ferredoxin_oxidoreductase Bioleaching Electron transport Metallosphaera sedula DSM 5348 8.513025848 8.406976122 7.722121947 7.683781399 7.34110802 7.539882645 183580480 pcaG Organic Remediation Aromatics Other aromatics Kocuria rhizophila DC2201 8.725098311 8.850182485 8.691163011 8.65752878 8.636880485 8.522422728 8.48307127 8.75462289 8.474848024 8.771252136 8.561165542 8.795068484 111026211 nahA Organic Remediation Aromatics Polycyclic aromatics Rhodococcus jostii RHA1 9.353553318 9.010590344 9.245598239 8.668188732 8.743662084 8.549734841 8.459902353 8.474926096 8.474932904 8.587548584 8.336110942 8.857870377 126667167 sigma_24 Stress Sigma factors Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 9.11626381 8.876177874 8.809457952 8.306186042 8.045026028 8.365189837 8.860930689 8.609097976 156533185 CopA Metal Resistance Copper Enterobacter sakazakii ATCC BAA-894 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 8.170691016 8.055670145 7.937726498 7.604623543 8.057831453 8.033257483 7.680151577 8.561849053 7.717858353 7.922567969 7.610519487 164636746 ChrA Metal Resistance Chromium Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 8.944191505 8.646066621 8.333830013 7.735481718 8.232614981 8.532951663 7.962277161 8.073425671 7.736320514 7.984717127 7.649808837 83723511 pcaG Organic Remediation Aromatics Other aromatics Ralstonia solanacearum UW551 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 8.987250419 9.23570416 8.594235803 8.605096501 8.549317044 8.715748214 8.973157344 8.575467077 9.114285716 8.357380914 8.450116865 8.459279506 12484399 phenol_oxidase Carbon cycling Carbon degradation Lignin Coriolopsis gallica superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Coriolopsis; 8.655809155 8.344452729 8.715420124 7.85517814 7.784447055 7.975426051 7.922247806 7.654087664 8.084969254 7.783038116 7.793241011 8.009964875 115257628 nhh Organic Remediation Aromatics Nitoaromatics Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 9.66077115 9.49768861 9.706460929 9.272947879 9.286433154 9.259081634 9.279268471 9.687681854 9.199489297 9.510554851 9.858826028 9.460222092 148254625 cbdA Organic Remediation Aromatics Chlorinated aromatics Bradyrhizobium sp. BTAi1 8.816738356 8.455525474 8.635311575 8.330324196 8.16944963 7.954815734 8.074802467 8.216220282 8.503508462 8.379797151 8.375082439 8.270487819 257056119 katE Stress Oxygen stress Saccharomonospora viridis DSM 43017 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora viridis; 8.227844274 8.579416308 8.242908592 8.121855597 7.702555745 8.020351264 8.277207804 7.997815646 8.121099332 8.251415279 225791753 ppk Phosphorus Phosphorus utilization Acidobacterium capsulatum ATCC 51196 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteria;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 8.992349474 8.825907689 8.686862776 8.195285498 8.293248145 8.204139025 7.987812993 8.226790873 8.206216326 8.173710866 8.429508995 86569002 TerD Metal Resistance Tellurium Frankia sp. CcI3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.803187791 8.573174663 8.924888144 8.363531134 8.296552377 8.163421287 8.07803005 7.992274047 8.344929888 8.07239962 8.139824663 8.374871397 166862496 cytochrome Energy process Energy process Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.297371042 8.699723894 8.833944702 8.036020547 8.076267167 7.747861495 8.100470291 8.533128826 8.522437122 8.273411683 8.336734612 89098045 amyA Carbon cycling Carbon degradation Starch Bacillus sp. NRRL B-14911 8.280467296 8.500863073 8.321124812 7.699904936 7.689608066 7.669724835 7.336845615 7.198383799 7.930790302 7.217180283 7.345785941 7.469069525 258537498 amoA Nitrogen Nitrification superkingdom:Archaea; 9.126033861 9.12527299 9.297149944 8.399252826 8.401256441 8.571455404 8.534651353 8.435121358 8.861686001 8.722237437 8.738201692 8.795495794 257792043 ahpC Stress Oxygen stress Eggerthella lenta DSM 2243 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Eggerthella;species:Eggerthella lenta; 9.569933762 9.503904323 9.669878133 8.725741397 9.083694605 9.315874544 8.970507064 8.72429765 9.110238845 9.022219265 9.224758563 8.904973681 83748930 silC Metal Resistance Silver Ralstonia solanacearum UW551 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 8.826648838 8.690409134 8.709985789 8.844356493 8.88826515 8.916019347 8.589859168 8.873899678 8.840074343 8.684061615 8.763213748 8.777634955 77389216 hrcA Stress Heat shock Rhodobacter sphaeroides 2.4.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 8.738463935 8.741471255 8.628854747 8.354598022 8.40915241 8.249885037 8.331065491 8.168537182 8.251036338 8.368070676 8.38826534 8.254260862 34496427 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 8.391929488 8.502921326 8.785473673 8.227139015 8.021955846 8.110001699 8.031374412 7.886674663 8.236264989 8.082895166 8.14700055 8.19575019 40286838 scnABC Organic Remediation Others Methylobacterium thiocyanatum 9.02362364 8.501700601 8.694692191 8.283868654 8.178714385 8.194532105 212539588 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 8.506287773 8.170597762 7.817523165 7.687783992 7.515548547 7.885688563 7.563269503 7.799136779 7.956929062 7.493068966 67087778 silC Metal Resistance Silver Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 9.708353169 9.495978843 9.417226602 9.090543396 9.136029103 9.105443493 9.359752591 9.315451659 9.379831866 9.217883009 9.283473849 9.130797802 83026028 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 10.72030184 10.61289557 10.7585888 10.2386216 10.10243074 10.12486666 9.900036801 9.770169852 10.65200728 10.4260223 10.6077115 10.45671905 255328975 sigma_24 Stress Sigma factors Propionibacterium sp. oral taxon 191 str. F0233 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acidifaciens; 8.324091248 8.301238982 8.150005527 7.510255134 7.872499487 8.018094511 7.710186892 7.518752771 7.84863661 99038742 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8.495066065 8.190344339 8.85657791 8.259138001 8.149886456 8.10338949 8.496903799 8.478134925 8.574553555 8.432121616 118434943 nahA Organic Remediation Aromatics Polycyclic aromatics Stappia aggregata IAM 12614 8.678789398 8.360556313 8.185176272 7.993843594 7.929482731 7.97640581 8.235924243 8.328238782 8.247585306 8.232820446 8.198503078 34332994 clamp_loader_T4_ATPase Bacteria phage REPLICATION Bacteriophage KVP40 order:Caudovirales;family:Myoviridae;genus:T4-like viruses;species:Vibrio phage nt-1 sensu lato; 6.901550815 6.892812131 7.111537183 194346770 AceB Carbon cycling Carbon degradation others Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 8.372227485 8.435542965 8.300480891 8.432362284 8.182049035 8.429419749 8.956700205 8.461827937 8.814952264 8.610892391 8.688230591 72121037 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.442787602 8.48493394 8.165720908 7.750150576 7.942721481 8.21943436 8.391718304 8.011317924 8.120920552 8.086101662 8.05458842 8.052357459 254488753 NirB Nitrogen Assimilatory N reduction Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.528524254 8.705790763 8.475255077 8.363797209 8.373215355 8.458520067 8.497259251 8.41969486 8.583546978 8.671365154 8.736108007 8.601747607 187924832 pstA Stress Phosphate limitation Burkholderia phytofirmans PsJN 9.287493654 9.078057475 8.522765395 9.498921516 9.280329697 8.902147926 9.311460161 9.370071024 9.265886482 9.252400248 9.391326956 8.637945108 151302180 APS_AprA Sulphur adenylylsulfate reductase Desulfocaldus sp. Hobo 8.790556996 8.485729109 8.399394739 8.569164407 7.80938608 8.285003416 8.659032545 8.482834779 8.877379692 8.166611138 8.144070447 8.237107459 211959063 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 8.42130348 8.350357839 8.198780262 7.88919817 7.7611868 7.678376116 7.312017822 7.575515387 7.763498487 7.860330333 7.738899988 7.865363824 171913564 sigma_24 Stress Sigma factors Verrucomicrobium spinosum DSM 4136 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Verrucomicrobium;species:Verrucomicrobium spinosum; 8.946178031 8.495926677 8.794128897 8.388008018 8.027308004 7.638750655 7.785416504 8.466138716 7.727748819 7.814577098 8.093310742 163735457 BchY other category chlorophyllide reductase Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 8.592273342 8.56457685 8.548142421 8.430234682 8.476845672 8.46004148 8.723177918 8.571748876 8.898865922 8.822625703 8.648638232 221532721 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 9.457900248 9.606190835 9.52369738 8.976216341 9.179198044 9.120901169 149822442 sigma_24 Stress Sigma factors Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 9.158771309 9.102512245 8.895955826 8.907681246 8.677733991 8.433273279 8.471891312 8.601319171 8.584606816 8.673217952 8.404137897 8.793106054 148512551 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.84362549 8.521869491 8.803589944 7.988668678 8.34301844 8.423381036 9.025292585 8.579042583 9.470774791 8.730285428 8.74051767 8.929986548 84690829 gyrB other category gyrB Parvularcula bermudensis HTCC2503 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 9.318942706 9.034577436 9.166153381 8.9179306 8.746100816 8.558605302 8.621991216 8.859702141 8.498925327 8.693615128 8.656526273 8.981647523 254521343 B_lactamase_A Antibiotic resistance Beta-lactamases Stenotrophomonas sp. SKA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 8.160016215 8.445355492 8.271160871 8.462888384 8.162590444 7.895643781 8.351212087 8.220521422 8.279339591 8.287951191 8.535195485 7.484068837 2052182 mer Metal Resistance Mercury Pseudomonas sp. superkingdom:Bacteria;phylum:Proteobacteria; 8.83625554 9.265719214 8.9209239 9.46736199 9.776070351 9.17779021 9.559939291 9.212488036 9.518383734 118175339 glnA Stress Nitrogen limitation Mycobacterium smegmatis str. MC2 155 8.789799818 8.835925234 8.810356708 8.405787494 8.205386924 8.201316639 8.295265267 8.091814837 8.268649433 8.185000842 8.225207145 8.475058266 16331493 grpE Stress Heat shock Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 9.388685296 9.144197748 9.177998669 8.809019362 8.467032593 8.140023461 8.243524662 8.501870492 8.564929723 8.507396463 8.38794885 8.658685123 110819439 CDH Carbon cycling Carbon degradation Cellulose Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 9.212009838 9.114161963 8.877634961 9.324290524 9.352658563 9.019236694 9.385201777 9.355356514 8.859678802 9.263743359 9.274309466 9.05850097 84502527 pimF Organic Remediation Aromatics Aromatic carboxylic acid Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 8.197960775 8.144881385 8.620821088 8.472831261 8.145366405 8.380953674 8.363962906 8.383130805 8.26782718 8.272812342 8.001764905 14022929 groEL Stress Heat shock Mesorhizobium loti MAFF303099 8.735669253 8.627533524 8.623713967 7.926816188 8.093182952 8.17312585 8.502962109 7.814815248 7.946929545 7.836799778 8.186071424 50876750 MFS_antibiotic Antibiotic resistance transporter Desulfotalea psychrophila LSv54 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfotalea;species:Desulfotalea psychrophila; 8.456665235 8.3689136 7.799548822 7.772023866 7.532627429 7.241629078 7.338821291 7.790669868 7.46343755 7.198909448 7.661546455 84382828 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 8.304965548 8.539639763 8.737528859 8.778561667 8.699122357 8.71676169 9.197091015 9.139177029 8.745373759 9.211398553 9.065705947 8.913823148 149202116 sigma_70 Stress Sigma factors Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.380707161 8.282764304 8.37269347 8.080917926 7.968506743 7.901634675 7.839289147 7.996177689 8.020597648 8.081521991 8.028729172 8.135090237 221728304 catechol_B Organic Remediation Aromatics Other aromatics Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.19953488 7.943185234 8.301605631 7.949384902 8.006384859 7.877902227 7.719194851 8.133901313 8.229784396 8.289595076 7.984334263 7.905887636 78185934 narI Stress Oxygen limitation Chlorobium luteolum DSM 273 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon luteolum; 8.826109863 8.243417694 8.807300038 8.725559308 8.461305312 8.145783804 8.485255416 9.001666778 8.771443863 8.882971353 8.908123138 8.9086754 28971822 phdCI Organic Remediation Aromatics Polycyclic aromatics Sphingomonas sp. P2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.933991109 8.5378544 9.017392222 8.460795964 8.579536739 8.276180613 8.264629717 8.519019486 8.488741883 8.561982939 8.47837705 8.550367476 258655295 amyA Carbon cycling Carbon degradation Starch Nakamurella multipartita DSM 44233 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 9.552924232 9.34534076 9.505424181 8.825421465 8.721416122 8.903778017 9.151978145 8.712250273 8.987398117 8.883049031 8.91673812 8.967197624 108802218 nhh Organic Remediation Aromatics Nitoaromatics Mycobacterium sp. MCS 8.17195191 8.520907313 8.267291907 8.872099234 8.823373016 9.014167436 8.498636504 9.127764285 8.436697292 8.789331999 8.958297186 3157608 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 8.463678276 8.635146572 8.819806357 8.382805058 8.092034004 7.989963953 8.256866425 8.181956893 8.345160415 8.056110577 7.93327459 8.181535558 158524010 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 8.559522668 8.518993712 8.513385881 8.335952234 8.418325343 8.646018528 8.149657169 8.499303432 8.41517943 8.412684312 8.545380775 8.324345949 94312853 silC Metal Resistance Silver Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.484728852 8.608937115 8.253341505 8.523830292 8.392488458 8.264018691 8.194534613 8.630275048 8.440858401 8.455318766 8.382558232 8.360680637 68250350 pheA Organic Remediation Aromatics Other aromatics Pseudomonas sp. M1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.536184322 8.502832218 8.852427982 8.971591942 8.918167311 8.289484982 9.190262599 8.412454074 8.75666505 8.761873068 8.962619551 73537460 fnr Stress Oxygen stress Ralstonia eutropha JMP134 8.552710762 8.170722425 8.683368708 8.355671734 8.261168024 8.172034827 7.646427335 8.063763675 8.209083553 8.164272125 8.199588698 7.992236241 148253164 fnr Stress Oxygen stress Bradyrhizobium sp. BTAi1 9.530173315 9.208419131 9.26094521 8.428435628 8.588846809 8.62024673 8.72777992 8.632707525 8.703495247 8.822410038 8.978379836 8.904847904 212533941 nagG Organic Remediation Aromatics Aromatic carboxylic acid Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 8.169272073 7.861772749 8.273416094 7.977238419 8.040652536 7.981067485 8.01098067 7.834923358 8.403686706 7.600252141 7.509621666 7.81943968 118732829 CopA Metal Resistance Copper Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.247805602 8.154414705 8.51405921 8.812649042 8.632956643 8.060544486 8.763410799 8.017222496 8.417753234 8.242046799 8.709616471 125863051 cap virulence capsule Methanoculleus marisnigri JR1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanoculleus;species:Methanoculleus marisnigri; 9.147360798 8.694177706 9.085093191 8.77389921 8.52784318 8.416613039 8.434705072 8.041314591 8.404615048 8.284065774 8.37528207 8.448888476 91796691 pstC Stress Phosphate limitation Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 8.70012962 8.693093105 8.482796956 8.58451945 8.399858655 8.275929586 8.652348456 8.488074916 8.580965574 8.548605624 8.442873111 8.325573806 146401624 NADH_quinone_oxidoreductase Bioleaching Electron transport Acidiphilium cryptum JF-5 8.880072007 9.042939658 9.200831009 8.402308685 8.475697676 8.109855822 8.37786082 8.426998826 8.383009641 8.483657513 8.307956972 8.662228584 118168639 CDH Carbon cycling Carbon degradation Cellulose Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 9.805908372 9.666349839 9.690412559 10.27194328 10.1792272 9.807489455 10.18048825 10.19644452 9.736073312 10.08519294 9.88127378 9.787879919 87136607 xylanase Carbon cycling Carbon degradation Hemicellulose Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 9.135861092 8.9918943 9.031903769 8.474297708 8.43859793 8.325028021 8.321929727 8.471660262 8.145854331 8.77549232 8.671208035 8.54852946 163757370 Arylest Organic Remediation Aromatics Other aromatics Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 9.434838583 9.46957382 9.330548495 9.212365944 9.588555339 9.905106511 9.628728916 9.664257853 9.66442486 9.52612997 9.957180498 9.543249713 229786412 sigma_70 Stress Sigma factors Catonella morbi ATCC 51271 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Catonella;species:Catonella morbi; 8.520946683 8.562648264 7.765797665 7.915999591 8.248106517 8.460535237 7.822954249 8.629005409 7.965908239 7.884209447 76801650 ureC Nitrogen Ammonification Natronomonas pharaonis DSM 2160 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natronomonas;species:Natronomonas pharaonis; 8.895640056 8.548856379 8.798135879 8.342214599 8.27080343 8.37059196 8.201846149 8.121376887 8.706130993 8.162641264 8.135371716 8.324224055 159046145 CopA Metal Resistance Copper Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 9.206595811 8.844548759 8.833415706 8.795143455 8.365691988 8.303384008 8.744037499 8.68959252 8.876463254 8.466776874 8.5305776 8.452538915 158510988 sigma_70 Stress Sigma factors Desulfococcus oleovorans Hxd3 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus;species:Desulfococcus oleovorans; 8.155866016 8.625140606 7.775933543 7.9476633 8.12206697 68510358 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.490032522 8.25965032 7.946454317 8.067560286 8.389908633 8.049922835 7.982879999 8.132381132 8.374649616 151563557 nmoA Organic Remediation Aromatics Nitoaromatics Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 9.221627204 9.094828952 9.422184692 8.594965663 8.312667873 8.329466806 8.113151928 7.885352148 8.320078868 8.232936005 8.282054963 8.519284221 146194999 SMR_antibiotics Antibiotic resistance transporter Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 9.978419406 9.918207944 10.04015862 9.278942504 9.598361104 9.369801316 9.52016279 9.617760136 9.622422615 9.774338121 9.691824338 9.677539702 83572934 pstB Stress Phosphate limitation Moorella thermoacetica ATCC 39073 8.488278582 8.458592961 8.282824716 8.404424959 8.318874509 8.284644577 8.463895614 8.347420439 8.317548082 8.278673591 8.296830579 8.066621634 468467 pheA Organic Remediation Aromatics Other aromatics Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.226747023 8.035869756 8.353299891 8.558096226 8.375820229 8.017863042 8.330175266 8.434484736 8.465937151 8.465919414 8.645068269 8.055280181 18159991 AceB Carbon cycling Carbon degradation others Pyrobaculum aerophilum str. IM2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum aerophilum; 8.452512885 8.018688357 8.315983094 7.935937183 7.77854996 7.468613226 7.327013296 7.008866395 7.732909941 7.50108186 7.126629872 7.44212896 111025787 bphC Organic Remediation Aromatics Polycyclic aromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 9.343258012 9.045954517 9.133041217 8.593241223 8.36962687 8.178595583 8.42832281 8.422712599 8.61801591 8.295251702 8.606066369 8.571004243 167696749 sigma_24 Stress Sigma factors Bacteroides stercoris ATCC 43183 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides stercoris; 9.088572683 9.000490398 9.204243918 8.128194246 7.657872227 8.181788206 7.928890756 7.665079625 8.185046914 7.811205305 8.069587743 8.204041659 238725435 nplT Carbon cycling Carbon degradation Starch Yersinia intermedia ATCC 29909 8.852015416 8.823562864 9.030581537 8.656828112 8.522785711 8.587677086 8.375153978 8.332245457 8.299339934 8.450897097 8.665497835 158523550 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 8.83198256 8.724075866 8.621925148 8.544438404 8.227181034 8.095086593 7.98975841 8.15605395 8.534088037 8.24041215 8.337989448 8.376574658 116651838 4HBH Organic Remediation Aromatics BTEX and related aromatics Burkholderia cenocepacia HI2424 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 8.597788082 8.537079726 8.493353895 8.775183989 8.672041258 8.419600894 8.657213614 9.234241147 8.979028079 8.912119394 8.61523132 8.797195126 158319963 catB Organic Remediation Aromatics BTEX and related aromatics Alkaliphilus oremlandii OhILAs superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus oremlandii; 8.520805097 8.215973715 8.613989131 8.223366085 8.127284734 8.538968954 8.263464185 8.082525034 8.457576694 8.073254317 8.265288682 8.192664509 83950569 Arylest Organic Remediation Aromatics Other aromatics Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 8.772603958 8.802998195 8.822773445 8.099788714 8.053653243 8.061404664 8.068621423 7.754333416 7.928972796 7.958328981 8.132841935 49477914 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bacillus thuringiensis serovar konkukian str. 97-27 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus thuringiensis; 8.607631349 8.356367218 8.573879845 8.642772625 8.942663181 7.766341451 8.72640737 8.418313692 8.579585965 7.900369569 160701294 ChrA Metal Resistance Chromium Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 8.701358487 8.590333803 8.920053077 8.42560785 8.254902116 8.091706835 7.858606131 8.391010518 8.170236668 8.235585603 8.484731735 77460235 Arylest Organic Remediation Aromatics Other aromatics Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.999130766 9.114704842 8.927961809 8.168007269 8.440034936 8.675270114 8.941040314 8.730376225 8.918807533 8.469084822 8.403519776 8.672584854 257169779 P450 Energy process Energy process Halomicrobium mukohataei DSM 12286 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halomicrobium;species:Halomicrobium mukohataei; 8.618727764 8.835890847 8.938063892 9.076643463 9.028803325 9.045732082 8.661830182 9.072160433 8.691682445 9.277618354 9.106355945 8.42236072 27531096 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Terrabacter sp. DBF63 8.49188057 8.665597256 8.553566318 7.94812826 8.051217522 7.773346031 8.47217475 8.191980726 8.271535444 8.189757526 8.134285537 163663866 SmtA Metal Resistance Miscellaneous Methylobacterium extorquens PA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 8.743154785 8.8685232 8.842138435 8.22214407 8.212874504 8.113283612 8.05612945 8.313543688 110592185 nirS Nitrogen Denitrification uncultured organism 8.050223847 7.992395417 8.100735642 8.002918084 7.94180815 7.834818019 7.856114977 8.196251317 7.635752454 7.702376109 219858365 AceB Carbon cycling Carbon degradation others Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 9.06404428 9.223145781 9.265542007 9.536078781 9.814772087 9.394910965 9.118319718 9.772203269 8.870627955 9.521845374 9.427607393 9.860441889 188991487 fnr Stress Oxygen stress Xanthomonas campestris pv. campestris str. B100 8.202437884 8.306474441 8.310267042 7.900577706 7.805123303 8.095306926 8.175045547 7.488915622 8.554175037 7.800655175 7.653791502 7.656132588 110632060 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.368569914 8.438617441 8.655190479 8.650022725 8.407382097 8.434657124 8.311647742 8.771181316 8.335345764 8.442868353 8.407684698 7.955163618 167647646 pimF Organic Remediation Aromatics Aromatic carboxylic acid Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.236098433 8.351315405 7.908525632 8.064750563 7.85417084 7.968216719 7.620411156 8.202490572 7.450909339 7.265132673 7.456708537 163663664 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Methylobacterium extorquens PA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 9.040303932 9.307081539 9.488147353 9.559541779 9.351623577 9.054017866 9.22695475 9.798524063 9.261274883 9.615093913 9.361453395 9.630296677 222453764 pcc Carbon cycling Carbon fixation Halorubrum lacusprofundi ATCC 49239 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 9.358028236 9.179682707 8.904672796 8.916420168 8.710365965 8.676548471 8.674788432 8.539846127 8.806347868 8.716345851 8.842228957 8.722061951 151302338 APS_AprA Sulphur adenylylsulfate reductase Desulforhabdus sp. DDT 8.571592861 8.346173824 8.510616238 8.167757559 8.035427096 8.318570739 8.34316469 8.200682377 8.474207182 8.380460336 8.258607569 8.438438526 254398851 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 8.485022447 8.374999736 8.729128434 8.217568768 8.256355463 8.283865358 8.048885484 8.231377647 8.248032433 8.307608524 8.573509506 158520503 pilin virulence pilin Desulfococcus oleovorans Hxd3 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus;species:Desulfococcus oleovorans; 9.388861988 9.323171715 9.382562654 9.136283448 8.946154019 8.734069759 9.000255168 8.697755183 8.909735964 8.864340929 8.692118066 8.991056308 222447454 pstC Stress Phosphate limitation Chloroflexus sp. Y-400-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus; 8.609569706 8.621616568 8.774800121 8.300216857 7.744676061 7.845547638 7.017509646 6.954056306 7.667328626 7.971216431 8.027705887 7.914897828 222106272 nmoA Organic Remediation Aromatics Nitoaromatics Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 9.159618921 9.143992262 8.382040437 8.233791195 8.056134513 8.367914397 8.208521604 88786009 obgE Stress Radiation stress Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 8.217072833 7.992395417 8.310987112 7.723507171 7.652175434 7.340352466 7.263825623 7.324883706 7.929792572 7.651793423 7.817222185 7.563409337 88936984 amyA Carbon cycling Carbon degradation Starch Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 9.771541175 9.667084009 9.811147077 8.879044195 8.851155798 8.893685748 8.691188921 8.385525579 8.729231594 8.885604264 9.016601271 256759197 fnr Stress Oxygen stress Thiomonas intermedia K12 9.321037068 9.315130092 9.519922884 8.924715724 8.858012604 9.115163508 8.545219185 8.592926447 8.748930859 8.73584062 8.905034107 8.941686684 252127101 narI Stress Oxygen limitation Corynebacterium matruchotii ATCC 14266 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium matruchotii; 8.448377047 8.642481564 8.526294882 8.497852226 8.64259654 8.605557958 8.959401128 8.905982372 8.489096663 8.85277097 8.972335165 8.680792441 103486649 tfdA Organic Remediation Aromatics Chlorinated aromatics Sphingopyxis alaskensis RB2256 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 8.698760961 8.499096469 8.506080387 8.273891364 8.18872138 8.062756203 7.973164352 8.088857431 8.11950861 8.308485898 7.96812787 8.152733095 28542617 nirS Nitrogen Denitrification uncultured bacterium 8.900158902 9.076282087 8.500349996 8.695559723 8.930615054 8.902202054 8.639840559 9.363677703 8.344083438 8.989803691 9.075188598 8.841575898 109290265 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.510477574 8.568056963 8.449019715 8.097460613 7.885981168 7.832278387 7.709820064 8.027088819 8.133689119 8.157370692 8.255406337 8.428575755 197210183 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.665808135 8.684962295 8.266921136 8.9094839 8.829524105 8.858146479 8.342772859 8.503916289 8.187066126 91977176 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.731289135 7.440285808 7.415709623 7.416749599 7.58179948 7.917327233 7.564692426 7.41833573 7.806012398 51892763 ZntA Metal Resistance Zinc Symbiobacterium thermophilum IAM 14863 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVIII. Incertae Sedis;genus:Symbiobacterium;species:Symbiobacterium thermophilum; 8.125154329 8.134870087 8.403432981 8.024661017 8.077100826 8.0483356 8.102493026 8.407333935 8.026903088 8.245978106 8.130014328 7.781428945 160428731 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Clostridium phytofermentans ISDg superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium phytofermentans; 6.919369044 6.673010333 6.956773572 6.716437185 6.855431911 116626822 sigma_24 Stress Sigma factors Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 8.760364898 8.452992672 8.361671302 8.471497925 8.586703827 8.486578535 8.604678363 8.516904043 8.348826776 8.573522813 8.726000819 8.345362126 124516606 ferredoxin_oxidoreductase Bioleaching Electron transport Leptospirillum sp. Group II UBA 8.315270037 8.318150829 8.309647918 7.746634546 7.724016643 7.854865287 7.559505121 7.84801824 7.63082528 7.409670925 7.721222969 78696804 nhh Organic Remediation Aromatics Nitoaromatics Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.806048686 8.825267389 8.705984489 9.016060723 9.421048475 9.395946352 9.247412272 9.738950595 9.079398229 9.736386098 9.563413127 9.672897254 118010934 catB Organic Remediation Aromatics BTEX and related aromatics Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 8.492779038 8.065547253 8.341401952 9.025800447 9.115959743 8.9948843 8.879057261 8.786199583 8.76115445 8.837347663 8.755631846 184205765 czcA Metal Resistance "Cadmium,Cobalt,Zinc" bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 8.217232713 8.267641353 7.812952963 7.56777418 7.562652074 7.365089901 7.661049891 8.069405265 7.300807356 7.486412971 7.672519239 78093590 narG Nitrogen Denitrification uncultured bacterium 8.423937456 8.497957192 8.285891092 8.079626243 8.086976356 7.841965223 8.059578796 8.244457899 8.288268797 8.240256369 8.130619113 116668908 CadA Metal Resistance Cadmium Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8.864366582 8.912868767 8.218223718 8.189652062 8.199064666 8.017594233 8.01487611 8.632685398 7.938498465 8.116414192 8.099875416 149809702 fnr Stress Oxygen stress Roseobacter sp. AzwK-3b 9.244610059 9.337047649 9.432605851 8.995116754 8.929577051 8.70439463 8.965495697 8.980417037 8.939333929 9.008406812 8.941003763 8.878400925 253576656 Tet Antibiotic resistance other Paenibacillus sp. oral taxon 786 str. D14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 8.555412243 8.5705006 8.427018882 8.039241928 7.932815609 7.767346359 7.773966039 7.746135478 8.09622033 7.560356151 7.629949241 7.707947556 154156755 MFS_antibiotic Antibiotic resistance transporter Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 8.136968259 8.061734915 7.518751946 7.417225791 7.597715262 7.490426012 7.53710658 7.534961014 7.433399732 8.02152171 227069649 NiR Nitrogen Assimilatory N reduction uncultured archaeon 8.256788924 8.386076463 8.390990739 8.180131119 8.353615352 8.389921971 8.360336709 8.163728333 8.228797005 8.305864007 8.198400826 158313257 tfdA Organic Remediation Aromatics Chlorinated aromatics Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.162034198 8.152382944 8.203168306 8.209455558 8.075028547 7.778743624 8.157950839 7.934449812 7.815304923 8.08007145 7.893801571 134100280 pimF Organic Remediation Aromatics Aromatic carboxylic acid Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 8.789787813 8.687073887 8.854796109 8.374090273 8.389761208 8.27457948 8.42121886 9.010824391 8.614268414 8.750162477 8.499244221 8.81758002 223477357 atzA Organic Remediation Herbicides related compound Thermococcus sp. AM4 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus; 8.403345857 8.060514195 8.229803376 7.702563347 7.36669504 7.534330159 7.037160978 7.100249051 7.676672019 7.354923717 7.198680734 7.663718929 108763778 AceA Carbon cycling Carbon degradation others Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 9.236132143 8.661201571 8.713408589 9.199766379 8.816867189 8.361217109 9.228655963 9.023643869 9.29762728 9.149050177 9.009749097 8.70565997 56809523 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.886668393 8.840379464 9.109847231 8.373057225 8.227665354 8.125843453 7.857502814 7.832680141 8.220863382 8.185803193 8.102237253 8.357495284 29338550 grpE Stress Heat shock Bacteroides thetaiotaomicron VPI-5482 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides thetaiotaomicron; 8.254491641 7.864839049 8.393398917 8.293241142 8.225140003 7.904999285 8.122810578 8.064214545 8.154912406 8.228241996 7.791955291 27414484 endolysin_glycosidase Bacteria phage LYSIS Pseudomonas phage PaP3 order:Caudovirales;family:Podoviridae;genus:LUZ24-like viruses; 8.007615658 8.178033364 7.829209932 7.597047078 7.835632543 7.85844909 7.112453415 8.106010321 7.289207956 7.227729019 7.465271838 196186206 pstA Stress Phosphate limitation Brevundimonas sp. BAL3 9.364664393 9.171188816 8.867824362 8.660693046 8.532452608 8.354935208 8.435153166 8.488234374 8.340206606 8.71067902 8.802312596 8.746820646 238787810 amyA Carbon cycling Carbon degradation Starch Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 8.92005606 9.053369151 9.065424743 8.054206937 8.546024744 8.750627663 8.631634909 8.036099237 8.383568225 8.217087175 8.533548374 8.381340447 167031208 tfdA Organic Remediation Aromatics Chlorinated aromatics Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.180368931 8.117841186 8.190487027 8.305461858 8.421686477 8.598155239 8.647838047 8.551371134 9.008648821 9.003691931 8.618130362 75194974 tutFDG Organic Remediation Aromatics BTEX and related aromatics Escherichia coli HS superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 9.155815692 9.002301466 9.127392667 8.180712343 8.329661845 8.48197384 8.179802324 8.16488085 8.359905124 8.16764056 8.575143782 196195183 pstB Stress Phosphate limitation Alcanivorax sp. DG881 8.98074048 8.96639537 9.111519626 8.509361875 8.598799984 8.579231161 8.64730729 8.086586449 8.879664383 8.398006294 8.430706612 8.524353984 119396542 nitA Organic Remediation Aromatics Other aromatics Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 9.324149277 9.343967275 9.2586094 8.959343535 8.874979015 8.750010638 8.823981346 9.074039182 9.17273415 9.010994407 8.775517666 9.020947819 146410555 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.569395792 8.986005256 8.919435318 8.525086571 8.56643326 8.301291427 8.623530271 9.037310695 8.71734205 8.742505173 8.554338321 8.748160437 227272193 xylA Carbon cycling Carbon degradation Hemicellulose Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 8.314970494 8.556690679 7.86060602 8.023768348 8.052025113 7.689417767 8.219972367 7.58619293 7.90840908 20977656 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.147753545 8.213909474 7.743263448 7.647327605 7.681737869 7.39807094 7.539361428 8.101764514 7.314449851 7.563053566 7.703040222 149202578 pstA Stress Phosphate limitation Roseovarius sp. TM1035 8.389294967 8.64918898 8.577546391 8.464002545 8.460113117 8.306237368 8.392174812 8.730421857 8.385943859 8.782830814 8.614506779 8.460369963 109457402 NirB Nitrogen Assimilatory N reduction Roseobacter denitrificans OCh 114 8.736329003 8.565417461 9.014837676 8.199059936 8.090919628 8.131419387 7.849755906 7.855491851 8.32671259 7.949961629 7.914381794 8.173960152 145216424 ureC Nitrogen Ammonification Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.623318127 8.308757363 8.534890288 7.808923502 8.038676564 8.106703158 8.492720086 7.804943094 8.768859836 8.103534424 7.919971366 8.238359486 229737963 SMR_antibiotics Antibiotic resistance transporter Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 9.340891027 9.279429665 9.577261146 8.607808583 8.446131878 8.540722904 8.273384759 8.239754137 8.277163343 8.381789959 8.407965218 8.650028411 160884115 mannanase Carbon cycling Carbon degradation Hemicellulose Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 7.481121711 7.367909965 7.157762194 6.853941168 6.963143008 7.300212101 7.023735417 6.990015442 119813626 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.409335382 7.873030396 8.154888338 7.526839999 7.574381075 7.299037636 7.286517262 7.158878018 7.455453153 7.429296912 225133279 AceB Carbon cycling Carbon degradation others Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.394146443 8.278518633 8.591122409 7.926492901 7.875947661 8.200678468 8.213352545 7.802802647 8.225234247 8.1844227 8.367464182 8.745472847 162568489 aoxB Metal Resistance Arsenic Thiomonas arsenivorans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas; 8.536625796 8.144096705 8.091848502 8.000413056 8.007341387 8.228159391 7.980543311 8.347376456 8.403662733 8.185266557 8.166364546 8.34856273 52428920 amyA Carbon cycling Carbon degradation Starch Burkholderia mallei ATCC 23344 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia mallei; 9.218409494 9.090652855 8.970894898 8.859729767 8.780216039 8.587926972 8.611900446 8.795508626 9.048557377 8.840377596 8.856016666 8.789305731 212714558 amyA Carbon cycling Carbon degradation Starch Bifidobacterium pseudocatenulatum DSM 20438 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium pseudocatenulatum; 8.555511019 8.437703403 8.39808532 8.347692267 8.385285489 8.212890545 8.386092085 8.304996495 8.523821786 8.352094074 8.200196894 8.389362882 156857711 APS_AprA Sulphur adenylylsulfate reductase uncultured bacterium 7.793491034 8.138616333 7.672552981 7.857217705 7.888989938 7.900899952 8.000405751 8.032175203 7.731262441 7.70985396 227993692 hrcA Stress Heat shock Meiothermus ruber DSM 1279 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 8.874138819 8.739863707 9.006991435 8.738941038 8.551810313 8.428990363 8.461153405 8.575307221 8.433086596 8.556376952 8.512171651 8.677890528 197776393 TerD Metal Resistance Tellurium Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 9.78900521 9.958587316 9.757433548 9.180417253 9.551621935 9.770236584 10.00522269 9.278080505 10.15513832 9.587967184 9.780099349 9.744508677 68264231 alkK Organic Remediation Others Corynebacterium jeikeium K411 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 8.91819313 8.803081965 9.176728294 8.346117325 8.333268419 8.02802159 7.967487806 7.832772628 8.049013163 8.057888776 7.779780644 8.168971934 194542117 bphF1 Organic Remediation Aromatics Polycyclic aromatics Mycobacterium tuberculosis C 8.442779088 8.305205725 8.401045339 7.960470114 7.80434432 8.118167973 8.008018858 7.83055314 8.037387572 7.816429314 7.99905752 7.793092333 238708857 narI Stress Oxygen limitation Yersinia rohdei ATCC 43380 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia rohdei; 8.946928391 9.109845613 9.004117848 8.428238546 8.3826753 8.344215623 8.214988539 8.269219056 8.181307893 8.326801626 8.196339749 8.558182898 218524407 fnr Stress Oxygen stress Methylobacterium chloromethanicum CM4 8.7525397 8.608542517 8.959934569 8.27819809 8.290923348 8.335320163 8.418134567 7.867031052 8.698299628 8.162248827 7.950364839 8.27514688 255295470 NirB Nitrogen Assimilatory N reduction Rothia mucilaginosa ATCC 25296 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Rothia;species:Rothia mucilaginosa; 8.412198348 8.530907386 8.384528438 8.402817398 8.843213952 8.710351204 8.652657651 9.272908527 8.433486694 8.910914609 8.90612216 8.706086266 192764410 narG Nitrogen Denitrification uncultured bacterium 8.996217915 9.00063416 9.289541203 8.774619163 8.734053209 8.474554713 8.884733091 9.019628013 8.961973728 9.066820832 8.905751812 8.857082402 119493471 amyA Carbon cycling Carbon degradation Starch Lyngbya sp. PCC 8106 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Lyngbya; 8.885516894 8.826254952 9.209632576 8.471875401 8.38120244 8.249910983 8.260832639 8.43793869 8.148838996 8.491995816 8.61287818 8.836883831 840829 pstB Stress Phosphate limitation Mycobacterium tuberculosis 8.879863267 8.680461726 8.947909418 8.060921986 8.375814833 8.34114238 8.654827268 7.902710407 8.274328172 8.260266212 8.247767772 183981521 akbF Organic Remediation Aromatics BTEX and related aromatics Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 8.941973902 8.981806576 8.707335969 8.429489311 8.601238959 8.789948798 8.941876938 8.536741576 8.684126779 8.526535043 8.605610187 8.237467975 163742452 pimF Organic Remediation Aromatics Aromatic carboxylic acid Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 9.132952062 8.994010403 9.087647181 8.665099982 8.778210927 8.604437806 8.517371127 8.908217855 8.778357733 8.689084574 8.64355737 8.786235084 84510797 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 8.882463969 9.139135507 9.171111695 8.350789682 9.299875134 9.546706402 9.169511493 9.455896487 8.947436844 8.820440997 9.054279739 50549019 grpE Stress Heat shock Yarrowia lipolytica superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Dipodascaceae;genus:Yarrowia;species:Yarrowia lipolytica; 8.649686733 8.354198456 8.601249313 8.177749889 8.065990337 7.982479158 7.875464451 7.747911407 8.114155319 7.949465689 7.874653067 8.047771414 167594239 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 8.050551212 8.206256263 8.120945204 7.174506223 7.10535515 7.536008914 7.791191724 7.052632197 8.212946156 111151754 nmoA Organic Remediation Aromatics Nitoaromatics Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 9.234538116 9.320019134 8.852881397 9.064537037 8.956834748 8.800932846 9.092284266 8.921392181 9.13447608 9.010102537 8.867184471 8.73780623 66851757 nmoA Organic Remediation Aromatics Nitoaromatics Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 9.536649249 9.398832764 9.438093 8.844041474 8.70835771 8.82004038 8.676069675 8.649460872 8.458564852 8.575788384 8.685652914 8.969300525 283812206 sigma_24 Stress Sigma factors Kribbella flavida DSM 17836 8.693168233 8.741438853 8.37639449 7.818993586 8.430378241 8.746743123 7.405785266 7.765635792 8.281119883 7.968670098 220920336 pcc Carbon cycling Carbon fixation Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 9.929663334 9.818860367 10.05493836 10.06321811 10.35993582 10.1132846 9.940338947 10.43378157 9.92647446 10.17164425 10.19045018 10.31736469 85707014 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 9.214249858 9.496197161 9.189806347 8.353951847 8.834980282 9.271302866 9.466638198 9.071055594 9.453537552 8.985874472 9.210283958 9.190614104 46109632 nitA Organic Remediation Aromatics Other aromatics Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 8.30812354 8.454252663 8.288388261 7.789466672 7.667974013 7.929703397 8.160403146 7.821557594 8.762583457 7.769890971 7.715743137 7.699945904 34496717 ppx Phosphorus Phosphorus utilization Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 8.444325486 8.248713531 8.391350704 7.707460543 8.182962675 7.991611823 8.155021954 8.374742076 7.975302892 196251310 mannanase Carbon cycling Carbon degradation Hemicellulose Clostridium thermocellum DSM 4150 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 8.586676525 8.09342014 8.224433951 7.991456989 8.175246982 8.087401848 7.693065847 8.076400544 8.054848237 7.903842382 8.103010472 8.057837918 121495548 narG Nitrogen Denitrification uncultured bacterium 8.411619402 8.207776526 7.487407595 7.805158432 8.065639759 7.965583198 7.858691218 7.990064931 8.065680709 7.689681915 126706613 pstB Stress Phosphate limitation Sagittula stellata E-37 8.350778315 8.051147069 8.1666918 7.986110234 7.896580598 7.808844822 7.995408505 7.82730453 7.975173982 8.039993805 148256025 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.853922953 9.130947151 8.548150424 8.923766061 8.775064126 8.994998299 9.24209075 9.53812184 9.244091845 9.753377195 9.709536592 9.650966204 238793286 B_lactamase_C Antibiotic resistance Beta-lactamases Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 8.971274046 8.828058876 9.093755834 8.559857723 8.373177236 8.229494349 8.104579893 8.167173361 8.57138583 8.127812926 8.24583994 8.385518679 23010069 pstB Stress Phosphate limitation Magnetospirillum magnetotacticum MS-1 8.766801544 8.766783426 9.04812094 9.00240634 8.887166632 8.625958773 8.781122944 9.156002336 8.82390966 8.913492697 8.622542135 8.914978042 197290632 napA Nitrogen Dissimilatory N reduction Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 8.849447512 8.89336129 8.763353775 8.555426724 8.633265149 8.370113248 8.291245669 8.315465448 8.524410274 8.523331149 8.501927621 8.31508751 4220435 nagL Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia sp. U2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 8.102307552 8.552909993 8.459675245 8.57269993 8.789990649 8.505377803 8.563377774 8.989161655 8.556533613 8.872967705 8.661379327 8.469450983 88778030 endochitinase Carbon cycling Carbon degradation Chitin Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 8.619896928 8.766293746 9.008841476 8.250479357 8.128837876 8.33052448 8.187077512 7.938141799 8.389717562 7.985726129 7.982315171 8.254250726 16126636 mdlD Organic Remediation Aromatics Other aromatics Caulobacter crescentus CB15 8.67315785 8.465806483 8.627178577 8.460611236 8.160798568 7.904834421 8.127964429 8.180437257 8.291168797 8.221289249 7.973626942 8.228213613 229208568 B_lactamase_C Antibiotic resistance Beta-lactamases Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 9.303981896 9.31014213 9.315626576 8.827410177 8.804551261 8.633613132 8.850131465 8.892422485 8.840313207 8.929211467 8.853217044 9.19477018 238919957 ureC Nitrogen Ammonification Edwardsiella ictaluri 93-146 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella ictaluri; 11.61905101 11.64586687 11.62515802 10.82938606 10.35979678 11.27494628 11.08515508 11.10043103 11.12688823 147848410 clpC Stress Protein stress Synechococcus sp. WH 7803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.468630421 8.465984294 8.600593051 7.886329618 7.847096933 8.273852174 8.481097702 8.021275366 8.462441422 8.016435378 8.050728667 7.89169694 83025958 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 8.820715497 8.726391623 8.283005019 8.723316006 8.631336928 8.487367819 8.591570223 8.904578974 8.483999956 8.724435647 8.367217033 24984482 phdCI Organic Remediation Aromatics Polycyclic aromatics Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.332483954 8.182764534 8.272362886 7.73117286 7.958600613 8.297902192 8.406426039 7.768971568 8.391135103 7.825992639 8.015704232 8.054202388 89067960 AceB Carbon cycling Carbon degradation others Oceanicola granulosus HTCC2516 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 8.288905283 8.33672934 7.896216709 8.31888198 8.068487055 7.726075118 7.98456092 8.040872517 8.489477249 8.062052885 14389189 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9.019871914 8.624904049 9.122194168 8.297785763 8.232650983 8.321718631 8.259583202 8.238754872 8.213564903 8.103495228 8.504775446 77019684 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Rhodococcus erythropolis PR4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 9.206270827 9.205436054 9.413469952 8.687000999 8.525903044 8.625280908 8.706697335 8.505408915 8.644975933 8.332441395 8.678006658 8.764853592 87135187 vanA Carbon cycling Carbon degradation Others Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 9.740997844 9.651447938 9.798374566 8.850907754 8.961803365 9.04390769 8.8596927 8.569906006 8.77319239 8.733674442 8.814407086 9.167246343 40738974 phenol_oxidase Carbon cycling Carbon degradation Lignin Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.459370441 7.62114774 7.855375717 8.134910755 8.015236365 7.414513708 7.421609037 7.589753138 99083039 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.238573967 8.026559181 8.221344786 7.88742253 7.811656947 7.911648557 8.016210547 7.79806994 8.165526251 7.890501572 7.858205263 8.042618525 42523160 pstA Stress Phosphate limitation Bdellovibrio bacteriovorus HD100 8.500732795 8.237188145 8.485533954 7.668214007 7.951311678 8.016669555 7.863569933 7.291504265 7.660233133 7.698458925 8.142525444 23005403 CadA Metal Resistance Cadmium Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 8.822945371 9.0800414 8.501624394 8.806716813 8.952892838 8.978149797 9.328453894 9.116117835 9.063665742 9.219797983 9.367061498 9.204831721 56419942 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Geobacillus kaustophilus HTA426 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus kaustophilus; 8.990669069 8.74992827 8.947796799 7.975514349 8.277773788 8.208786773 8.353844074 7.536792665 8.625568007 8.027485046 8.243794543 8.385912257 95110681 nagK Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae; 8.347162955 8.990085311 8.402989204 8.64254523 8.997525944 8.808471489 9.352324903 9.157753084 8.933299949 8.709822493 8.930693667 8.663630094 87286306 pstB Stress Phosphate limitation Blastopirellula marina DSM 3645 8.942133926 9.065324611 8.245896785 8.224723214 8.015311139 8.932177471 8.586626077 88787339 nitA Organic Remediation Aromatics Other aromatics Synechococcus sp. WH 7805 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.723930396 8.771829592 8.500232535 7.829498301 8.038790203 8.307962574 8.330083806 8.252681837 8.5487966 7.995272877 8.031724061 8.03041283 148657363 BchY other category chlorophyllide reductase Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 9.146496408 8.755177176 8.551296632 8.879560652 8.584916768 8.194170136 8.795785784 8.24390099 39942074 tfdA Organic Remediation Aromatics Chlorinated aromatics Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 8.889848238 8.827962022 8.754144922 8.651497648 8.667063921 8.301025745 8.761600237 8.542484052 8.44038169 198267318 atzB Organic Remediation Herbicides related compound Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 8.645972991 8.766588642 8.610279287 8.233892667 8.294785846 8.223771461 8.535544901 8.293192152 8.530491191 8.094353341 8.315129363 8.176994316 197627085 nasA Nitrogen Assimilatory N reduction Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 8.462528152 8.571689043 7.924237397 7.956161444 7.98137422 8.077685327 7.359724387 8.395995032 7.897317612 7.856367772 7.864360065 183173622 CopA Metal Resistance Copper Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 8.271513442 8.110135775 8.488682701 8.414059164 8.276405579 8.819506002 8.536366482 8.485173577 8.37411288 8.636715123 8.394503487 139003600 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.436781796 8.180780176 8.752733538 8.510340775 8.290930204 8.072375856 8.572134902 8.670596922 8.505855223 8.595887359 8.291995426 117927966 obgE Stress Radiation stress Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 9.243482153 9.218128553 9.458417013 8.987486207 8.921690004 9.153964814 9.284380898 9.196367496 9.131197764 9.174168977 9.158258634 9.214214921 258558309 pstB Stress Phosphate limitation Nakamurella multipartita DSM 44233 8.479700273 8.333799773 8.350321612 8.419183041 8.338229127 8.080589918 8.276746435 8.549707049 8.735464135 8.55091676 8.256099989 8.477175552 66840929 amoA Nitrogen Nitrification superkingdom:Bacteria; 9.140803615 8.231827706 8.580175698 7.503963228 7.41279767 8.021110165 7.863858076 7.560891641 8.130232865 7.731653206 7.961830892 7.628330919 89100573 TerD Metal Resistance Tellurium Bacillus sp. NRRL B-14911 7.180400998 7.469743653 7.268910881 7.147353394 7.109393881 7.004346836 7.525939206 45386169 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 8.022785109 8.233336566 8.037523341 7.557986195 7.431038553 7.594756602 7.91548461 7.439825564 8.116154891 7.630333685 7.608814064 7.692826741 153005453 cytochrome Energy process Energy process Anaeromyxobacter sp. Fw109-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 9.14314965 8.882068338 8.985353531 8.746833902 8.689349438 8.65252295 8.631604306 8.822539268 8.651358164 8.58384153 8.608533069 8.70890098 27354314 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.281554282 8.240105124 7.943717767 8.447923435 8.319891851 8.24403345 8.056359912 8.155976042 7.801831972 32447418 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 8.329678364 8.070681853 8.492068906 8.013754875 7.820044928 7.704153493 7.651986062 7.503024125 7.977013135 7.629535169 7.628083128 7.921040055 158187218 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. NCIMB 10467 8.415088135 8.399850835 8.682033408 8.051155733 7.926672438 7.809563291 7.753948215 8.012417178 8.256383037 7.868051484 7.720868211 8.058040158 22776715 ChnA Organic Remediation Other Hydrocarbons Oceanobacillus iheyensis HTE831 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Oceanobacillus;species:Oceanobacillus iheyensis; 7.240925496 7.088674549 7.231586283 6.74562381 7.375027822 6.902354278 6.765241301 7.138866077 197772882 glx Carbon cycling Carbon degradation Lignin Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 8.916916354 8.686976966 8.360118444 8.862912416 8.71914908 8.91756629 9.036302485 9.183809568 9.070000681 9.324431702 9.232499896 9.120727196 256790521 grpE Stress Heat shock Slackia heliotrinireducens DSM 20476 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Slackia;species:Slackia heliotrinireducens; 8.553982522 8.312557377 7.937580507 7.819771945 7.631589535 7.791945504 7.522370672 7.896773355 7.788052844 7.921502683 7.634332316 116749775 GroES Stress Heat shock Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 8.695522707 8.578755631 8.831664394 8.305297006 8.102253493 8.144989064 7.741336688 7.515039203 8.001153303 7.642019103 7.741457904 8.044877283 240281736 phytase Phosphorus Phosphorus utilization Ajellomyces capsulatus H143 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 9.063070457 9.148303932 9.22759467 8.426807859 8.393740785 8.256739731 7.963671828 8.047608059 8.061664449 8.298865776 8.2798962 8.546925713 228895625 pstC Stress Phosphate limitation Cellulomonas flavigena DSM 20109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 9.898215574 9.823685345 9.634373482 9.627776396 9.635283848 9.772081486 9.901387928 9.800677305 9.653928807 9.603482226 9.899821181 9.680204478 147677066 glnA Stress Nitrogen limitation Pelotomaculum thermopropionicum SI 9.088487936 8.481718828 8.608951787 8.737181193 8.363509713 7.778318367 8.442392748 8.458887797 8.358848688 8.483889099 8.176621211 7.782360292 133737698 CusA Metal Resistance Copper Herminiimonas arsenicoxydans 9.031967898 8.974926133 9.188331668 8.61956599 8.277242067 8.176491997 8.53953925 8.325114446 8.843568462 8.428642908 8.399465112 8.567175403 67159175 ZntA Metal Resistance Zinc Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 8.648787281 8.705494187 8.779132744 8.195361943 8.112862846 8.094787917 8.247551119 7.893423802 8.244166716 7.918943838 7.994162551 8.082978678 118661068 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 9.087841144 9.026583254 9.104175853 8.290179145 8.236705005 8.295685685 8.483939907 8.249443396 8.41814928 8.338898604 8.093972662 8.512847779 222478939 pstA Stress Phosphate limitation Halorubrum lacusprofundi ATCC 49239 8.414449614 8.516758824 8.695030603 7.904153664 7.858630256 8.218035008 7.830633409 7.511586983 7.851715012 7.832307622 8.177628318 227992600 proV Stress Osmotic stress Meiothermus ruber DSM 1279 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 7.952821188 8.014463771 7.447802787 7.494757028 7.527120782 7.426053811 7.222124201 7.797806915 7.23274201 7.887578828 111073799 endochitinase Carbon cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 8.27884524 8.066491486 7.916215856 7.796586877 7.635185249 7.509189613 8.047313802 7.948739584 7.966656497 7.837138074 8.273985132 121 CODH Carbon cycling Carbon fixation 8.598639937 8.552773047 8.505546373 8.338772309 8.179750996 8.047029541 7.962631435 7.917757681 8.2120433 7.982359468 7.88807003 8.033744597 89046595 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Oceanicola granulosus HTCC2516 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 8.628325641 8.993599284 8.187028716 8.644000848 8.751909989 8.785705672 8.951697271 8.654760899 8.748895777 8.372753731 8.657234552 8.128837598 28202823 ChrA Metal Resistance Chromium Clostridium tetani E88 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium tetani; 8.313568071 7.743572502 7.892556109 7.441653206 8.54218953 7.181435546 7.443425366 241367732 fnr Stress Oxygen stress Acidovorax delafieldii 2AN 9.229624564 9.258842724 9.109381933 8.675298612 8.551873497 8.631971805 8.573267709 8.548717809 8.740578699 8.412311244 8.533885454 8.674720736 116182296 CopA Metal Resistance Copper Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 8.733261246 8.399185796 8.472192135 8.441484268 8.221494385 8.617410745 8.153945269 8.998758019 8.800715339 14025036 nmoA Organic Remediation Aromatics Nitoaromatics Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 8.745375746 8.682834774 8.661480037 8.881259009 8.883127676 9.072691538 9.11597138 9.447451279 8.996181164 9.135192647 9.202960036 9.399639747 39982700 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 9.733036113 9.706967321 9.707788619 8.649260914 8.843693853 9.029881908 9.268279842 8.759580017 9.63798495 8.965297926 9.059163027 8.971933333 163760379 fnr Stress Oxygen stress Hoeflea phototrophica DFL-43 8.719793195 8.767164523 8.552243342 8.666774007 8.272208153 8.880621936 9.309264747 8.894708025 9.040944507 8.826515483 148553995 Catechol Organic Remediation Aromatics Other aromatics Sphingomonas wittichii RW1 8.735421727 9.034154463 9.034041299 8.608823803 8.58086698 8.97881019 9.317429274 8.594634827 9.217754565 8.54040214 8.690088094 8.433037603 258532645 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 9.052184449 8.924792395 8.649981412 8.544169489 8.685112571 8.640203245 8.689978582 8.840372399 8.900601877 8.782047593 257149365 ABC_antibiotic_transporter Antibiotic resistance transporter Lactobacillus rhamnosus GG superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 8.130398915 8.253530166 7.681555103 7.815198802 7.393126199 6.98456442 7.494328951 7.950465231 7.624596507 7.382545619 7.410965313 254441113 AceB Carbon cycling Carbon degradation others Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 9.662527123 9.566931933 9.754892099 9.384237125 9.358792223 9.15087878 9.246009823 9.41362309 9.316998909 9.558214252 114704858 dmsA Organic Remediation Others Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 8.445963602 8.421663979 8.225232654 8.179261286 8.093511652 8.593115548 8.225136976 8.31186491 8.320445451 8.277172787 7.973937249 47182 merB Metal Resistance Mercury Streptomyces lividans superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.536997417 8.704850329 8.865422119 8.314574037 8.326658499 7.989003847 8.203460272 8.746228163 8.624509526 8.392252118 8.548871459 28971842 xylM Organic Remediation Aromatics BTEX and related aromatics Sphingomonas sp. P2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.65778677 8.139375744 8.815228247 8.780798278 8.899228049 8.214326156 8.84273287 8.41290064 8.6697667 8.927914258 8.333648714 94984596 pcc Carbon cycling Carbon fixation Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 8.449594251 8.529940581 8.52393781 8.713990904 8.719690031 8.748203487 9.0842851 9.305581968 8.764513259 9.4142568 9.279751113 8.908743698 269935729 amyA Carbon cycling Carbon degradation Starch Mobiluncus mulieris 28-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus mulieris; 9.907484868 8.682445385 8.540337984 9.288354112 9.194046694 8.979501982 9.317594711 8.698953245 90419262 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 8.899464173 8.822453122 8.718804164 9.2294237 9.120308748 8.812962015 9.036246593 9.671073492 9.075451109 9.100817918 8.968720498 57116474 vanA Carbon cycling Carbon degradation Others Comamonas testosteroni superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 8.568271065 8.722596895 8.458538689 8.465158642 8.270870366 8.063187963 8.192702396 8.521821344 8.688858346 8.582179379 8.79904609 8.75278329 223963292 Tet Antibiotic resistance other Holdemania filiformis DSM 12042 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichi;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Holdemania;species:Holdemania filiformis; 8.329973535 8.171161847 7.612848615 7.57356957 8.017197001 7.926216705 7.849888157 8.004673688 8.085848599 7.857509018 8.110484416 224944606 ABC_antibiotic_transporter Antibiotic resistance transporter Corynebacterium matruchotii ATCC 33806 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium matruchotii; 8.766819986 8.701989948 8.937906825 8.518656568 8.295750379 8.164416758 8.080775102 8.316712424 8.363025539 8.128523154 8.036608139 8.3523864 157850546 nahA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 9.199868559 9.065914412 9.059024849 8.45466285 8.26970081 7.882499643 8.599064286 8.108137492 8.69334171 7.983046701 8.154179699 8.238856477 34103929 inv virulence invasion Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 8.945828357 8.937987157 8.907675167 8.69052178 8.608678686 8.268029582 9.182235031 8.958607007 8.806496292 8.743220138 8.707868266 8.534741021 191160919 cytochrome Energy process Energy process Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 9.091071024 8.94519164 8.663235176 8.584376077 8.759125582 8.938638571 9.181292774 9.031960292 9.037849912 8.777035261 8.939509669 8.836227848 88062453 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 9.570823354 9.36501375 9.517225651 8.600247836 8.62370231 8.772713198 9.27946232 9.068309545 9.23904693 8.861009527 8.92560055 9.1180385 186883006 hydrogenase Energy process Energy process Desulfovibrio fructosovorans superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio fructosovorans; 9.983074906 10.24272798 9.953701684 9.849274333 9.928154739 10.2563776 10.28173256 10.40538895 10.1967727 10.80732929 10.71384911 10.51179614 134291679 CadA Metal Resistance Cadmium Burkholderia vietnamiensis G4 7.962932276 7.97445531 8.062555835 8.184351734 8.089383306 7.798720265 7.64936113 8.189240625 8.114804495 7.967763347 8.208776018 7.873673529 160917615 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.591298733 8.687045395 8.71239792 8.382776275 8.263990402 8.462451151 8.900712329 8.589532431 8.951010273 8.336289296 8.379894109 8.465111563 237861577 phenol_oxidase Carbon cycling Carbon degradation Lignin Polyporus grammocephalus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Polyporus; 8.223807962 8.373066159 8.506369816 8.19271375 7.657307921 7.990110316 7.831408855 8.162076224 7.879636417 7.742525597 7.732306371 77865326 ureC Nitrogen Ammonification Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 8.53757008 8.510901417 8.702001421 7.934781303 8.092497667 7.692391498 8.113408896 7.405640618 8.025780841 8.013004989 7.72310589 8.103721938 224413888 AceA Carbon cycling Carbon degradation others Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 8.247381741 8.281234176 8.22889029 7.607133013 7.749547576 8.361908983 8.175450573 8.188315155 222421348 obgE Stress Radiation stress Staphylococcus carnosus subsp. carnosus TM300 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus carnosus; 10.48772835 10.4914327 9.14299564 8.682653745 9.099969045 9.603610405 9.172701916 8.508882252 9.394947413 8.885853161 8.939681786 9.414400457 256396332 SMR_antibiotics Antibiotic resistance transporter Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 9.705414635 9.339556462 9.312303948 9.00410284 9.250609824 9.316753259 9.60511951 8.693320304 9.433558156 9.147125405 9.235223376 9.327941751 224026540 ahpC Stress Oxygen stress Bacteroides coprophilus DSM 18228 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides coprophilus; 9.137250859 9.007280541 9.209909084 8.62693304 8.505412441 8.391456312 8.131938904 8.141894582 8.558476283 8.258984972 8.195167415 8.617684321 56478725 ebdABC Organic Remediation Aromatics BTEX and related aromatics Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 8.53488971 8.648122614 8.227749982 8.236930655 8.067699011 7.907228822 8.457001056 8.248811012 8.325500717 8.11348125 8.330784781 41398613 katE Stress Oxygen stress Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 8.040783899 8.107014561 7.534820678 7.581142367 7.473268086 7.338954274 7.200445041 8.008220296 7.685833865 7.368817743 7.557717449 115285215 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Burkholderia cepacia AMMD superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 7.780016575 8.401234015 8.114488979 8.354778337 126434266 pcaG Organic Remediation Aromatics Other aromatics Mycobacterium sp. JLS 9.130543475 8.858280998 8.898195758 8.308827193 8.525435519 8.33927246 8.303578388 8.188835104 8.168115367 8.080312921 8.362574867 8.356002006 89054243 ureC Nitrogen Ammonification Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 7.892709626 7.754924996 7.618563474 7.76955086 8.186443555 7.89573351 7.382385009 7.957910573 7.453185417 91697667 fnr Stress Oxygen stress Polaromonas sp. JS666 8.641032374 8.845872611 8.634123368 9.225651009 8.924497564 8.288994217 9.06918061 8.970135523 8.859485105 9.05037161 8.867076263 8.542545552 213970185 pilin virulence pilin Pseudomonas syringae pv. tomato T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 8.944721984 8.906493932 9.162343789 8.538630299 8.42459779 8.163264633 8.313582436 8.498164369 8.565055132 8.676616704 8.634900789 8.424945831 238704396 pap virulence adhesin Yersinia aldovae ATCC 35236 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia aldovae; 8.47711481 8.455058238 8.617084504 8.219634035 8.172422455 7.981357318 8.034706966 8.569881511 8.307600487 8.432076258 8.258111746 8.513770289 133948824 Catechol Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 9.232775551 9.216218825 8.904779174 9.12983596 8.86584717 8.945401062 9.139777329 8.835885759 8.761564052 8.935797702 9.101499691 8.89574729 254467190 SMR_antibiotics Antibiotic resistance transporter Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.85452139 7.710267036 7.514682382 8.016505687 7.443992005 7.167837592 7.426641383 7.473640908 211905607 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.996464222 7.891808363 7.991816094 7.612314009 8.036454201 7.863611349 7.949289098 7.913995433 8.105860254 84685154 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.430395335 8.21747931 8.347129844 8.298113716 8.388043217 8.267691819 8.637136956 8.289357744 8.545948822 8.620581483 8.265499837 72121247 mauAB Organic Remediation Herbicides related compound Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 10.25924453 10.19506768 10.02621938 10.29663563 10.24769477 9.803017212 10.59216043 10.32783314 10.2343642 9.87721817 9.934916335 9.777187275 15091 integrase_tyrosine Bacteria phage REPLICATION Mycobacterium phage FRAT1 8.274024705 8.31785494 8.183105134 7.954449837 8.266761649 8.415550451 8.578399836 8.328573277 237876257 sigma_38 Stress Sigma factors Burkholderia glumae BGR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia glumae; 8.652973218 8.696108969 8.330763254 7.479091864 8.175015681 8.029106397 8.463979432 7.430761383 8.384933911 7.900346916 8.040221547 7.886942837 229588264 type_III_secretion virulence secretion Pseudomonas fluorescens SBW25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.508528202 8.618012852 8.61444581 8.133161331 7.928414818 8.020603338 7.675716128 7.755711359 8.096861794 7.803159623 7.852914579 8.270081439 225568838 Tet Antibiotic resistance other Clostridium hylemonae DSM 15053 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 8.881016294 9.16588743 9.090306288 8.70984342 9.059845178 8.761930071 8.455547375 9.326402313 8.448816739 9.132843253 8.899150832 9.353855952 6457849 sigma_24 Stress Sigma factors Deinococcus radiodurans R1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 8.240746758 8.375128232 8.216821159 8.044499823 7.986011157 7.999124478 8.433910376 8.358645829 8.218291376 8.356843981 8.339338195 8.146739161 262333580 ara Carbon cycling Carbon degradation Hemicellulose Rhodothermus marinus DSM 4252 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 9.556820721 9.325703499 9.479635202 8.863618139 8.846785763 8.757662587 8.736056397 8.770863344 8.530201685 8.814847871 8.900833786 9.039116417 56419510 Al Metal Resistance Aluminum Geobacillus kaustophilus HTA426 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus kaustophilus; 8.466938161 8.218472656 8.463408054 8.154026382 8.073994271 8.22694101 7.978700562 8.349286915 8.319185782 8.368590554 8.642372138 8.328805332 85058608 SMR_antibiotics Antibiotic resistance transporter Sodalis glossinidius str. 'morsitans' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Sodalis;species:Sodalis glossinidius; 8.410734812 8.106213247 7.761188308 8.272381663 8.13813934 8.223382774 8.185601923 8.196382688 7.934684333 169239956 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium abscessus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.304926507 8.107849192 8.263620542 8.474638869 8.626605076 8.420594348 7.959648855 8.636953737 7.974666589 8.224848302 8.08044003 8.407822667 119775776 glnA Stress Nitrogen limitation Shewanella amazonensis SB2B 8.309795938 8.198452774 7.912733203 7.981591313 7.651937678 7.800242453 115379096 todF Organic Remediation Others Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 8.861242694 8.745501702 8.957207478 8.274815213 8.275385047 8.035565313 8.212755209 7.826826891 8.420473657 8.128779708 7.985929193 8.29474709 17743030 4HBH Organic Remediation Aromatics BTEX and related aromatics Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.717566336 8.343372034 8.415578591 8.107059553 8.007230669 7.524615796 8.242707428 8.685044819 8.339960921 8.404449787 8.167384856 8.303157602 262037111 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 8.006103103 8.070788457 8.016784895 7.946658069 7.88969566 7.148275118 7.842375128 7.76166647 7.710026628 7.735572422 7.677008261 219677005 hmgC Organic Remediation Aromatics Aromatic carboxylic acid gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 9.15883366 8.844928574 9.217649222 8.615873053 8.42517597 8.62213592 8.444036137 8.571099285 8.097089123 8.422652549 8.534277112 8.770738333 60476239 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 8.530949175 8.551076317 8.491654312 8.005891674 7.858451527 8.504546233 8.765144817 8.220738487 8.352748019 7.95767385 8.21836887 8.163831558 86356357 glnA Stress Nitrogen limitation Rhizobium etli CFN 42 8.701575185 8.250146566 8.525677946 8.37157694 8.197597792 7.989957332 8.498565581 8.383061091 8.147780371 8.359846479 8.638252134 218516700 Catechol Organic Remediation Aromatics Other aromatics Rhizobium etli 8C-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.045274527 8.062240847 8.150044149 8.124415945 8.580504976 7.898341046 8.549211762 8.211299308 8.273328179 8.554346897 8.059277639 119948917 ureC Nitrogen Ammonification Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 8.167134178 8.190690924 7.502870967 7.486865133 7.968499982 8.218656701 7.957661372 7.720573393 7.656610537 8.060774755 187720110 fnr Stress Oxygen stress Burkholderia phytofirmans PsJN 8.268276676 8.131329303 7.847946066 8.011226343 7.812682798 8.261506009 7.950287204 7.597937086 7.667815978 225076141 katE Stress Oxygen stress Neisseria flavescens NRL30031/H210 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria flavescens; 9.572916141 9.445026051 8.868730262 8.892324393 9.139875361 9.279585705 9.433609784 9.226815062 9.473795474 8.960296943 9.080770732 9.001691369 220924478 B_lactamase_C Antibiotic resistance Beta-lactamases Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 8.607386081 8.545627263 8.116898604 8.094032182 7.909670366 8.343016359 8.157065298 8.407624205 8.305757643 8.201027598 8.069200546 177842937 TehB Metal Resistance Tellurium Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 9.205561041 8.987192598 9.101116448 8.650382299 8.43709594 8.460610041 8.224850243 8.218036983 8.437621058 8.292773427 8.394546521 8.617739219 124363594 CopA Metal Resistance Copper Methanocorpusculum labreanum Z superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanocorpusculaceae;genus:Methanocorpusculum;species:Methanocorpusculum labreanum; 8.922854444 8.973094734 9.046732541 8.521104153 8.431756315 8.296581142 8.061128881 8.028739092 8.490951604 7.953972699 8.179800676 8.487497754 116254256 Arylest Organic Remediation Aromatics Other aromatics Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.152801707 8.456186417 7.479962531 7.525064003 7.675585159 8.092851852 7.434927601 7.567120058 7.336248653 7.831343624 219539549 Ni_Fe_hydrogenase Energy process Energy process Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 8.541469274 8.981199259 8.828980343 8.045345044 8.662346328 8.687082009 8.749953903 8.944337489 8.473846736 8.97374275 8.961993874 8.873701749 117993070 ArsC Metal Resistance Arsenic Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 9.122157984 8.926817521 9.073582665 9.130326928 9.097782678 9.039745917 9.068792621 9.404126772 9.194462743 9.553961591 9.291011445 9.217680312 119402490 pectinase Carbon cycling Carbon degradation Pectin Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 8.915554862 8.998851377 8.976189583 8.193860227 8.028171869 8.471713342 8.164047892 7.78293625 7.573592859 8.255622962 8.052540002 8.365724386 83767401 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus oryzae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 9.903019942 9.925106632 9.783773746 9.322479293 9.128347196 9.000428202 9.406839886 8.999302191 9.434378319 9.239618057 9.466413505 9.14210298 162568589 aoxB Metal Resistance Arsenic uncultured bacterium superkingdom:Bacteria; 8.870305155 8.72243183 8.654205507 8.01837444 8.189926587 8.232427704 7.72626115 9.084607436 8.542264885 8.395237953 218756597 cytochrome Energy process Energy process Desulfovibrio vulgaris str. 'Miyazaki F' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 9.040912078 8.660786104 8.295188764 9.204201738 8.913933628 8.836549795 9.128154533 9.042156403 8.448276814 8.865579568 8.687493913 8.569028183 52694940 nifH Nitrogen Nitrogen fixation Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 8.768553176 8.348144034 8.822101689 7.993170014 8.108838735 7.957001383 7.974596205 7.960511589 8.083469286 113529318 nagI Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.589295221 8.545975276 8.285137101 8.583454174 8.637142001 8.503668432 8.365108982 8.546614202 8.569664041 8.782545757 8.63106167 8.77234391 110592173 nirS Nitrogen Denitrification uncultured organism 8.355495016 8.341561527 8.104801206 7.528211828 7.713266226 7.648793146 7.591863807 7.621152282 7.962141063 7.788173308 148656572 CadA Metal Resistance Cadmium Roseiflexus sp. RS-1 9.075534746 8.770689744 8.656985392 8.999974742 8.746688251 8.523804592 8.768433944 8.28151473 157918322 sigma_70 Stress Sigma factors Salinispora arenicola CNS-205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 8.355578537 8.489776661 8.362133795 8.125658134 8.170905083 8.111352324 7.853736799 8.2087995 8.074698219 8.274819147 7.966170698 242262673 ctsR Stress Protein stress Clostridium cellulovorans 743B superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium cellulovorans; 8.260470049 8.420674753 8.526605488 7.901344754 7.87689775 7.849232493 7.405317499 7.692245776 7.761544872 7.658466935 7.709384492 7.923494972 152013640 phenol_oxidase Carbon cycling Carbon degradation Lignin Fusarium oxysporum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;genus:Fusarium; 8.33893079 8.186293934 7.682791055 7.425648907 7.413806715 7.13288491 6.803409471 7.252508472 7.269799396 7.466385775 227822552 sigma_24 Stress Sigma factors Rhizobium sp. NGR234 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 8.489699815 8.531999801 8.372178586 8.107198644 8.438857843 8.584674172 8.674492172 8.436034713 8.828263171 8.606501681 8.508903259 8.693178105 170139661 ppx Phosphorus Phosphorus utilization Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 8.32911628 8.455927831 8.5338848 8.197695708 8.249975085 8.199991612 7.821947354 8.085243995 8.17341525 8.018356781 8.242254815 8.106316829 126433113 glnA Stress Nitrogen limitation Mycobacterium sp. JLS 8.467477652 8.484166032 8.449205159 8.655990244 8.493628933 8.15866582 8.613642087 8.82927966 8.577340451 8.598282573 8.744064089 8.180600256 109645692 trzN Organic Remediation Herbicides related compound Desulfitobacterium hafniense DCB-2 8.977656392 9.144370977 9.222709684 8.390780565 8.276921517 8.445804622 8.074453823 8.382795783 8.345158738 8.225040259 8.499857246 241763279 pilin virulence pilin Acidovorax delafieldii 2AN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax delafieldii; 8.23216889 8.201005084 8.218574137 7.72963054 7.303236487 7.180733035 7.541256969 7.58812402 7.949446754 7.508152785 7.472214601 7.528285355 269926898 sigma_24 Stress Sigma factors Thermobaculum terrenum ATCC BAA-798 superkingdom:Bacteria;genus:Thermobaculum;species:Thermobaculum terrenum; 8.806137406 8.62614088 8.807725821 8.064894198 8.127183672 8.124099568 7.965514207 7.650706303 8.406045407 7.755260044 7.742419362 8.19365537 254452739 sigma_70 Stress Sigma factors Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 8.319252612 8.144410621 7.459649167 7.43122407 7.325273219 7.006148936 7.557668558 7.049608808 7.322321408 7.452405837 110825534 alkK Organic Remediation Others Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.603612952 8.647001693 8.659664577 8.279608022 8.090778981 8.213946265 8.0929761 7.875456757 8.261899141 8.131043611 8.009001826 8.210006996 15212234 adpB Organic Remediation Pesticides related compound Agrobacterium tumefaciens superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 9.006699121 8.590767023 8.866277824 8.094435757 8.070944415 8.354737896 8.681143044 8.035012634 8.643174025 8.063838376 8.398217679 8.298320781 166859715 mauAB Organic Remediation Herbicides related compound Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.436302527 8.417342962 8.096947606 8.051900487 8.290739661 8.442215503 8.157987451 8.395512875 8.506708096 8.231062974 8.150294716 8.08028162 133738727 czcC Metal Resistance "Cadmium,Cobalt,Zinc" Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 9.212001968 9.314758874 9.538756963 8.799808806 8.680630132 8.516489427 8.483486059 8.488631287 8.557557421 8.467757997 8.783414551 221064871 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.404548414 8.19788574 8.311544578 7.721843577 8.104340349 7.937194155 8.202263227 7.390244598 8.189378332 7.811239098 7.692710005 7.866000538 109290274 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.722568238 8.699560646 8.512350231 8.458158387 8.276110793 8.250273504 8.526388357 8.365430749 8.622210242 8.527520892 8.610423347 133948874 Catechol Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 8.769234561 9.03850857 8.740594953 9.18835503 9.142695315 8.687111961 9.237869458 9.302740713 8.873212977 9.170534847 8.967366588 8.681799985 147850771 pstS Stress Phosphate limitation Synechococcus sp. RCC307 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.412531532 8.709911615 8.63163232 8.42407737 8.094740634 8.223430138 8.240647151 8.008538953 8.377014795 8.131352071 7.88613951 7.981656887 40787175 phn Organic Remediation Herbicides related compound Pseudomonas stutzeri superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.252816623 8.343564955 8.454752516 8.000796766 7.912727669 8.204724602 8.080520777 8.02957241 7.984224896 7.740916376 8.272249881 77378791 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.478921251 8.365003312 8.129044718 8.003822945 7.803506589 8.17118038 8.298081712 8.408417588 8.2400884 8.03836978 8.050393651 159882287 mer Metal Resistance Mercury Hydrogenivirga sp. 128-5-R1-1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenivirga; 8.163452183 8.095080656 8.339925644 7.249719188 7.045244781 7.538464483 7.300581357 7.882523441 78356157 APS_AprA Sulphur adenylylsulfate reductase Desulfovibrio desulfuricans subsp. desulfuricans str. G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 8.35945025 8.36902649 7.660019961 7.927069233 7.806885407 7.883567007 7.879030874 8.21266261 8.191391437 8.25795603 7.830602968 78367424 ChrA Metal Resistance Chromium Shewanella sp. PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 9.505553634 9.679937249 9.414583633 9.304249846 9.486322437 9.292956817 9.408353832 9.850922397 9.235355028 9.450343838 9.420461976 9.398663069 226318817 gdh Nitrogen Ammonification Deinococcus deserti VCD115 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 8.985729459 8.683338467 8.916119432 8.842884036 8.51178953 8.172539061 8.66914595 8.540178917 8.61598801 8.664394617 8.518345427 8.585890621 149358703 Arylest Organic Remediation Aromatics Other aromatics Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 9.109461701 9.108612159 9.184368757 8.636278501 8.409210459 8.362186029 8.130118564 8.053721084 8.285392335 8.2542322 8.401900382 8.742795712 118467896 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 9.277495937 8.791234441 8.864414133 8.44530948 8.589773752 8.610152108 8.682431481 8.551364511 8.808093947 8.501815062 8.563736881 8.469880239 194546545 alkB Organic Remediation Other Hydrocarbons Pseudomonas aeruginosa C3719 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 6.891710335 7.017742157 6.986547657 7.063194225 6.761011055 7.242957175 218768523 alkK Organic Remediation Others Neisseria meningitidis Z2491 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria meningitidis; 9.153160694 9.049706397 9.310630082 8.905014083 8.564530275 8.177998685 8.049286671 8.285511801 8.351083141 8.576772108 194098784 CopA Metal Resistance Copper Neisseria gonorrhoeae NCCP11945 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria gonorrhoeae; 8.650841022 8.597928885 8.70056031 8.021698514 8.169278581 7.93997417 7.979925307 7.749256492 8.183105646 8.091513071 7.872449081 190995000 TehB Metal Resistance Tellurium Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 9.713698667 9.414495449 9.374199849 9.463083317 9.341624882 9.445179707 9.211813391 9.547088518 9.134341391 9.509871594 9.855768417 9.319853247 153901556 ureC Nitrogen Ammonification Methylobacterium extorquens PA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 8.475831946 8.304681358 7.427628335 7.068489806 7.418339317 7.264836872 16505117 NirB Nitrogen Assimilatory N reduction Salmonella enterica subsp. enterica serovar Typhi 8.304711728 8.404796195 8.41104814 8.752572971 8.585485368 8.613459788 8.526379399 8.65242524 8.224726503 8.485892451 8.466412701 8.101204471 115345138 mnp Carbon cycling Carbon degradation Lignin Phlebia tremellosa superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phlebia; 8.29449462 8.268293066 8.344710813 7.3812027 8.1833339 8.311308542 8.684363339 7.106710465 8.415227823 7.678606471 8.119358434 7.757637706 254980894 pstA Stress Phosphate limitation Nitrosomonas sp. AL212 9.031731928 8.672695715 9.102693256 8.483011063 8.903423174 8.633958937 8.502635955 7.889181455 8.070613922 8.057734114 8.130106093 8.121055057 83594120 atzC Organic Remediation Herbicides related compound Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 9.029624709 9.100282089 9.029697428 8.539907542 8.49442463 8.213106883 8.208893211 8.185322086 8.240977805 8.272601142 8.063252062 8.510420065 77378645 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.210946432 8.214211074 7.658793372 7.512755023 8.279881669 8.408159763 7.980042931 8.365113669 8.368258745 8.366290027 170774339 fnr Stress Oxygen stress Leptothrix cholodnii SP-6 9.036689536 9.115187973 9.130444339 8.938581945 8.929915452 8.495615532 8.661759849 8.866586632 8.75839878 8.872304699 8.781634669 8.643765216 119817918 Catechol Organic Remediation Aromatics Other aromatics Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 10.2609483 10.19575394 10.41090445 10.31223632 10.37938859 10.00635895 10.05010662 10.51800522 10.13847044 10.58323117 10.27739058 10.49602717 254229453 cap virulence capsule Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.091489417 7.840130941 6.865646583 6.89086505 7.036395448 115421752 nagG Organic Remediation Aromatics Aromatic carboxylic acid Bordetella avium 197N 8.410240847 8.242208691 8.264916593 7.899308177 7.813818547 7.734180464 7.806174902 7.756061465 8.47117861 7.63271407 7.648919852 7.790528469 157411436 napA Nitrogen Dissimilatory N reduction uncultured prokaryote 8.441332143 8.512959493 8.55730601 7.653676807 7.617201685 7.656283549 7.365232788 7.246579688 7.541519066 7.175962259 7.901849044 74316884 obgE Stress Radiation stress Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 8.520750007 8.539177213 8.48163511 8.369367864 8.634242291 8.810543272 8.637191318 8.904660149 8.586944913 8.697021022 9.133583336 8.923887373 145843724 AceB Carbon cycling Carbon degradation others Tuber borchii superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Pezizomycetes;order:Pezizales;family:Tuberaceae;genus:Tuber; 7.896032505 7.378698054 7.566483449 6.926847836 6.730332806 7.159026362 7.244776496 7.216878681 146340169 sox Sulphur Sulphur oxidation Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 9.342884642 9.002555168 8.849443421 9.373419563 8.840586497 9.068406507 8.889488569 9.267538993 8.684251108 8.93036289 9.411091938 9.213787611 134034476 mer Metal Resistance Mercury Rhizobiales bacterium Is-B040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales; 8.839372529 9.087834896 9.144512232 8.491208017 8.804755793 8.602756237 8.588904729 8.797569776 8.78257001 8.831651683 8.717035775 8.866970919 56809495 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.818823667 8.820007629 8.936865348 8.367752923 8.313428271 8.192769573 8.172911091 8.164530051 8.481755969 8.163652255 8.179226747 8.35989773 145222473 pcc Carbon cycling Carbon fixation Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 7.935202009 8.090401521 8.500064714 8.106995208 8.040120732 8.143131395 8.164006759 8.613276473 8.387585948 8.503239315 8.455624914 8.202439355 156450625 ureC Nitrogen Ammonification Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 8.709658097 8.228523637 8.64625433 8.217970162 8.306720784 8.085062001 7.65267659 7.75965663 8.035718257 7.96899265 8.097080163 8.233300454 13815825 alkK Organic Remediation Others Sulfolobus solfataricus P2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus;species:Sulfolobus solfataricus; 6.864723153 7.182252814 32442997 CadA Metal Resistance Cadmium Rhodopirellula baltica SH 1 9.853143281 10.25911064 10.17562797 10.40469595 10.47788723 10.16844025 10.35589129 10.4738112 10.07470559 10.40003329 10.16075549 9.540974766 118501764 cap virulence capsule Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 9.399016105 9.377667756 9.437140014 8.337311096 7.789275479 8.840059534 9.400288438 8.34088813 9.422265865 8.582474071 8.703838286 8.898226028 194309413 amyA Carbon cycling Carbon degradation Starch Pelodictyon phaeoclathratiforme BU-1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 7.914861572 7.941996988 7.495235476 7.650611829 7.470628566 7.579393049 7.801299955 7.585612267 7.650617933 7.434629006 7.555849537 256666696 B_lactamase_C Antibiotic resistance Beta-lactamases Streptomyces sp. AA4 8.612549201 8.563193681 8.439128359 8.974672566 8.607002197 8.620864341 8.803430382 8.498270443 8.349263495 8.209024864 85687636 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Erythrobacter sp. NAP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 9.443399453 9.801245699 9.60754562 9.809420636 10.01506508 9.780919196 9.965140664 10.01943133 9.806399122 10.35267614 10.08068546 9.814228178 63256821 xylA Carbon cycling Carbon degradation Hemicellulose Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 8.215451358 8.36816098 8.55475881 7.747812395 7.699834248 7.492545871 7.819388448 7.457157016 7.372597713 7.262631179 7.673144902 110669493 glnA Stress Nitrogen limitation Haloquadratum walsbyi DSM 16790 8.602845022 8.750939612 8.61183017 8.029465898 8.94485129 8.543948129 8.634946128 8.489714915 8.617722539 8.43872992 8.768002853 8.615960986 114737566 sigma_32 Stress Sigma factors Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 7.724984481 8.551325776 8.615336488 8.606211381 8.65687402 8.450155232 8.23187466 145217169 chnB Organic Remediation Other Hydrocarbons Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 9.010466741 9.251717697 8.533211205 8.540052366 8.581495419 8.781836764 9.238777464 8.805421482 8.875527946 8.573892146 8.659062918 8.485643433 152989181 Catechol Organic Remediation Aromatics Other aromatics Pseudomonas aeruginosa PA7 9.030806436 8.837925096 8.775822933 8.286348767 8.414926455 8.394242638 8.240986466 8.448029855 8.11228421 8.51365378 8.228708308 8.512883708 254985125 nrfA Nitrogen Dissimilatory N reduction Geobacter sp. M18 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.183934183 8.157023695 7.502072368 7.309055831 7.915502915 7.838297854 7.600779402 7.787000115 7.643430302 7.468950733 7.535418242 1177721 bphD Organic Remediation Aromatics Polycyclic aromatics Rhodococcus sp. M5 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.721294352 8.654586303 8.839858847 8.317172058 8.242617603 8.162473237 7.900371295 8.021189263 8.329078151 7.968831879 8.020985024 8.323137871 46307986 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.754061043 8.898685812 9.109427551 8.995001451 8.987608416 8.732760035 8.898390784 9.531162513 8.908896881 9.252545316 8.948069301 9.134053306 15606622 sigma_38 Stress Sigma factors Aquifex aeolicus VF5 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Aquifex;species:Aquifex aeolicus; 9.344453212 9.306860709 9.319315566 9.163030345 9.272111911 8.910353989 8.841773865 9.202758948 9.2149568 9.244720141 9.101100425 114228535 phenol_oxidase Carbon cycling Carbon degradation Lignin Cryptococcus neoformans var. grubii superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Tremellomycetes;order:Tremellales;family:Tremellaceae;genus:Filobasidiella;species:Filobasidiella neoformans; 8.580410958 8.986956078 8.892850024 8.216181945 7.792621139 8.180886939 8.013888915 7.805255542 8.049430618 7.901335535 7.805434984 8.308074811 110284142 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 9.36070837 8.927588772 8.265235055 9.773428152 9.587072143 9.458138989 9.717761618 9.605379322 9.0073702 9.420195381 9.304747625 68135519 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.220499184 8.420704548 7.528842601 7.70574511 7.828239727 7.786375857 7.676803139 7.863231507 8.068339083 8.04629462 8.033222421 254447635 ppk Phosphorus Phosphorus utilization gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 9.651697236 9.696073215 9.483380945 8.873415354 8.802860949 8.974028716 71274594 pilin virulence pilin Xylella fastidiosa Dixon superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xylella;species:Xylella fastidiosa; 8.322634458 7.968402994 8.274373577 8.23511101 8.058066693 8.040870529 7.734071013 8.065450917 7.957493223 7.847496925 8.024946511 8.232333291 219868656 sigma_70 Stress Sigma factors Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 8.224968435 8.438120312 8.605461121 8.191424933 7.770368119 8.216631445 7.469214528 7.740104787 7.783651131 7.993043121 8.021888233 4062993 endoglucanase Carbon cycling Carbon degradation Cellulose Trichoderma viride superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Trichoderma; 9.891474004 10.1597466 9.895939139 9.347550764 9.434855789 9.61694205 9.92876734 9.471675769 9.651221553 9.293709099 9.405164895 9.407568846 262037061 amoA Nitrogen Nitrification superkingdom:Archaea; 8.765558181 8.509567868 9.03229814 8.601324264 9.237311067 8.746861947 8.565691263 9.09718623 8.997340474 9.163630137 9.419813678 116224601 sigma_24 Stress Sigma factors Candidatus Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 9.303600767 9.232289349 9.413382423 8.794725513 8.96084482 8.999457967 9.326160232 8.750640699 9.258940109 8.734108046 8.786758129 9.103675292 209874453 CopA Metal Resistance Copper Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 8.921031885 9.102512245 8.669127309 8.335622273 7.916769098 8.901814758 9.000268537 8.730548305 8.487199607 8.771769043 8.973128835 179345556 CopA Metal Resistance Copper Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 11.07333607 11.0784102 11.05565608 10.24530224 10.29095745 10.65573716 10.90198072 10.47535444 11.09219728 10.69381334 10.70120325 10.7671747 196482300 tfdA Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 8.182048253 8.129725954 8.022217357 7.871238884 7.589745002 7.818171958 7.858820557 7.884089534 7.687184556 7.318447571 7.349879526 227393012 AceA Carbon cycling Carbon degradation others Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Haliangiaceae;genus:Haliangium;species:Haliangium ochraceum; 8.820902014 9.200712767 9.791895477 9.545547535 9.655738903 9.257366337 9.609681474 10.12136053 9.4300598 9.90573049 9.669028521 260773647 pilin virulence pilin Vibrio metschnikovii CIP 69.14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio metschnikovii; 8.988961205 8.656204532 9.105156924 8.275503205 7.931019511 7.915880407 8.300265468 8.10815206 8.259305645 8.078647525 8.440224481 161393801 gyrB other category gyrB Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 9.629936058 9.56335793 9.463127449 9.24451011 8.842085052 9.135014351 9.681483973 9.217055207 9.432310525 9.202661467 9.389766878 9.267500418 227193252 nplT Carbon cycling Carbon degradation Starch Lactobacillus reuteri MM4-1A superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus reuteri; 8.511756475 8.223914015 8.44247194 8.268257171 7.955907114 7.884858627 7.859851141 7.698229298 8.302155307 8.033436108 7.868663148 8.113887436 94554279 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 9.531726107 9.614069713 9.725390496 8.897897842 7.910774648 8.766086065 8.806027546 8.728679827 8.683698566 8.669042407 9.065244487 219675588 gyrB other category gyrB gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.198025918 8.478458211 8.423736398 8.031587484 8.079175348 8.165848082 8.04268097 8.253981205 8.153753352 8.11936398 8.046032656 8.222779182 163761225 pcaG Organic Remediation Aromatics Other aromatics Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 8.858302694 8.541356025 8.871558767 8.303864445 8.244881751 8.26101329 8.268408974 8.015826298 8.437187394 8.220270053 8.277580075 8.294455481 99030545 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 8.434211538 8.093378859 8.842209979 8.53782734 8.423512104 8.142711593 8.174862445 8.738106569 8.335022103 8.526707366 8.506584948 8.689551246 436027 gyrB other category gyrB Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 9.380690115 9.398211422 9.31228904 8.545095599 8.789781796 9.05278665 9.529074292 8.890023561 9.526025612 8.677741646 8.507805427 8.802425787 254284386 P450 Energy process Energy process gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.294243016 8.302077136 8.678620663 8.211411428 7.88614361 7.861885148 221533585 mer Metal Resistance Mercury Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 8.793520096 8.643815928 9.138852983 8.378077571 8.464896092 8.509419633 8.684496231 8.998424943 8.304234468 8.019708611 8.422633827 197769166 TerD Metal Resistance Tellurium Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 8.973747866 8.676009969 8.935330731 8.509225309 8.529848475 8.299706689 8.295393793 8.557237113 8.324995586 8.626235347 8.516124672 8.7347028 50982452 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 8.76310383 8.488208271 8.296639991 8.574723513 8.631105655 8.16605873 8.838443122 8.672181887 8.712517889 8.38574375 8.432396332 8.051479244 237801570 xylA Carbon cycling Carbon degradation Hemicellulose Pseudomonas syringae pv. oryzae str. 1_6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 8.430197262 8.598608029 8.984195823 7.988600135 7.914425332 7.851751631 7.587653955 7.200113845 8.09614705 7.818770031 7.852888635 7.702825514 145616506 ChrA Metal Resistance Chromium Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 8.236098433 8.358594617 8.714262468 8.443610448 8.345874822 8.210225794 8.311581181 8.282459611 8.121603015 8.142290292 8.001673063 8.188984527 209492701 mer Metal Resistance Mercury Arthrospira maxima CS-328 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira maxima; 9.752635794 9.588779595 9.837548728 9.315767967 9.033374545 9.1954426 8.818667312 9.01336532 8.528521525 8.989974506 9.049201008 9.305605852 188580311 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 8.495275894 8.411990405 8.369868051 8.357872048 8.423631743 8.268814497 8.19290725 8.403354834 8.599198663 8.375338357 8.066016197 8.275700098 218750970 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.252137554 8.399048946 7.753079481 7.625919634 7.834358059 7.445952422 7.570489899 8.053982414 7.633357287 7.50271053 7.660179034 214043206 CopA Metal Resistance Copper Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.137129914 8.1581563 8.498317662 8.16854773 7.984894155 7.921055385 8.006555723 7.674946767 8.299355997 7.864407804 7.620921801 7.851832686 238938897 AceA Carbon cycling Carbon degradation others Zygosaccharomyces rouxii superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Zygosaccharomyces; 8.727327697 8.657573578 8.976908711 8.096845872 7.975042798 8.077639132 8.199966521 7.905874422 8.152604773 7.726457955 8.296357056 148261710 biotin_carboxylase Bioleaching Carbon fixation Acidiphilium cryptum JF-5 8.617092904 8.594370011 8.627326367 8.405142074 8.30970003 8.435907865 8.059551673 7.842967488 8.572752789 7.929331044 7.783388755 8.203419264 146275789 katE Stress Oxygen stress Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 9.351670006 9.414861721 9.497844656 8.880271807 8.795416587 8.686688753 8.477687643 8.637544768 8.640458329 8.679394289 8.814354184 8.9768694 283438016 sigma_24 Stress Sigma factors Pirellula staleyi DSM 6068 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Pirellula;species:Pirellula staleyi; 8.252919415 8.280857698 7.908374318 7.796096506 8.129429455 8.223448409 7.898828813 8.303816835 7.619645004 7.994793087 8.032167565 260202442 pcc Carbon cycling Carbon fixation Mycobacterium tuberculosis T46 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 8.177822395 8.418357868 8.523306671 7.744766974 7.871099847 8.373395145 8.337130153 8.006102026 8.42429322 8.398459875 8.533563699 8.031705943 148498545 sigma_70 Stress Sigma factors Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.889181197 9.08449185 9.073275213 9.014785514 9.06745755 8.745981002 9.371388032 9.273502521 8.841109326 9.128205429 9.304143032 9.082483148 212710899 ppk Phosphorus Phosphorus utilization Providencia alcalifaciens DSM 30120 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 8.199556599 8.010782005 7.903249612 7.196404565 7.219503449 7.44234472 7.313418274 7.185144055 7.711518034 7.287277804 7.033859577 167749152 mannanase Carbon cycling Carbon degradation Hemicellulose Eubacterium siraeum DSM 15702 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium siraeum; 7.646629101 7.408324625 7.467593143 7.291865051 7.648287879 160917390 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.270028444 8.241674826 8.317223149 7.912370787 7.846437694 7.866292984 7.676871853 7.641804733 8.107151366 7.742549533 7.706059744 7.81502529 254399853 glx Carbon cycling Carbon degradation Lignin Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 8.833859616 8.945107973 9.335106327 8.498654445 8.473351503 8.40054324 8.2781742 8.295496932 8.335672346 8.451058776 8.532765214 209517641 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.215184401 8.099276283 8.100307591 7.652001967 7.761236718 7.925814192 7.94094082 7.627691533 8.121077626 7.622989521 7.931881083 7.68970239 115352641 ChrA Metal Resistance Chromium Burkholderia cepacia AMMD superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 8.560082579 8.610027598 8.746180852 8.614735485 8.757635943 8.618611355 8.915096274 9.013292609 8.715062906 9.406100582 8.947005698 8.814487175 13173333 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.875811618 8.673429944 8.92600693 8.378752562 8.164917028 8.199246382 7.983171655 7.822789464 8.40908293 8.024736005 8.057637344 8.347114955 78692508 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.425907324 8.65429179 9.013663403 8.823921753 8.748767 8.46195158 8.926440934 9.417866511 8.915801492 9.198974766 8.964045654 9.403303317 81300774 ppx Phosphorus Phosphorus utilization Synechococcus elongatus PCC 7942 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus;species:Synechococcus elongatus; 9.202382655 9.353073713 9.194267695 8.549907779 9.025552889 9.260575585 9.677616325 9.415945051 9.506885843 9.307645409 9.333992662 9.351955818 218324251 hly virulence hemolysin Vibrio splendidus LGP32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 9.469958139 9.53002598 9.869518715 8.866338484 8.669537903 8.985209631 8.562518541 8.554352545 8.717873569 8.802406294 9.148820158 85671599 nasA Nitrogen Assimilatory N reduction Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.348499438 8.174401391 8.244453429 7.783005571 8.665607155 8.341086274 8.397006331 8.087142373 115367542 endochitinase Carbon cycling Carbon degradation Chitin Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 8.112749682 8.083992943 8.286249698 7.536406737 7.557409331 8.005526466 7.906922982 7.441033327 8.066978067 8.094384271 7.989647121 8.062088507 71848035 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 8.377180452 8.001014144 8.0107947 7.804048202 7.72337324 7.536721959 7.441898769 7.768517929 8.058307393 8.073018208 8.086557595 45679 xylG Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.459939654 8.390657081 8.508421624 8.349464537 8.565642866 8.591938402 8.340724214 8.724073313 8.446425759 8.526900889 8.437578563 8.564301596 152993847 pstC Stress Phosphate limitation Sulfurovum sp. NBC37-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;genus:Sulfurovum; 8.474497941 8.590938531 7.728048883 7.778906163 7.572626234 7.593711919 7.744200857 7.689862524 7.335751981 7.090222456 7.13100824 169003934 nplT Carbon cycling Carbon degradation Starch Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 8.474390829 8.618983655 8.453557571 8.268634253 7.86156009 8.122862184 7.748181731 7.847212985 8.213090232 8.097673847 7.823309083 8.105372262 119856865 nitro Organic Remediation Others Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.57072882 8.914196131 8.586784247 8.112474371 8.460133653 8.767854862 9.022835932 8.619578526 8.473836572 8.436195746 8.542711847 8.5148273 83845876 ppx Phosphorus Phosphorus utilization Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 8.41134733 8.306541155 8.083613568 8.235288276 8.346199311 8.204031078 8.467205461 8.40432285 8.715500026 8.81277907 8.512072371 95930412 fnr Stress Oxygen stress Desulfuromonas acetoxidans DSM 684 8.779539702 7.967876517 8.272573617 7.917289489 7.86557323 7.496645019 8.269009882 7.827560394 8.124510141 8.037032217 8.208106334 7.78518303 116611117 ahpC Stress Oxygen stress Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8.771808581 8.538899547 8.741050099 8.722251775 8.711131657 8.765724343 239804715 pilin virulence pilin Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 8.703280904 8.339400759 8.32553608 8.504518911 8.580044282 8.380608101 8.512439026 8.516103138 8.533313913 8.546465014 8.531762583 8.085038125 89898615 obgE Stress Radiation stress Chlamydophila felis Fe/C-56 superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Chlamydiaceae;genus:Chlamydophila;species:Chlamydophila felis; 8.327342225 8.066473472 7.525337421 7.531504666 7.359906259 7.327256703 6.831481097 7.622187693 7.22413061 7.328922339 7.665666292 139003464 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.21071043 7.94089149 7.74840343 7.706099947 7.836226842 7.394980061 7.806819604 7.647987197 7.956683533 7.817252933 152972555 proO Organic Remediation Aromatics Other aromatics Klebsiella pneumoniae subsp. pneumoniae MGH 78578 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 7.884763335 7.47134391 7.451859681 6.934878029 7.349075823 7.564876479 7.347118672 7.335153484 7.265382718 270153455 Ni_Fe_hydrogenase Energy process Energy process Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.920154114 8.188954937 7.637526653 7.398367602 7.571248231 7.36616394 7.117973989 7.868524048 7.388864411 7.115492316 7.306523517 18076028 merP Metal Resistance Mercury Pseudomonas sp. 9.721571392 9.57386219 9.65344397 9.346398246 9.058160365 8.799898618 161729069 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 8.845253393 8.955426943 8.997822198 8.518885336 8.259649513 8.266764045 8.064366722 7.894843941 8.323084364 8.0338187 7.881242202 8.333881336 54013974 nmoA Organic Remediation Aromatics Nitoaromatics Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 8.509077596 8.649851925 8.763530016 8.727299838 8.610799716 8.583207327 8.819166874 8.800206835 8.761894572 8.868319 8.62589519 8.494111793 111611621 nitA Organic Remediation Aromatics Other aromatics Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 8.84235437 9.027054074 9.116492923 9.104865573 8.992443578 8.928940506 9.100762227 9.59588823 9.1242462 9.469764362 9.214420245 9.397414536 254266738 fnr Stress Oxygen stress Methylobacterium extorquens DM4 9.683030771 9.142922833 9.941577959 9.470142314 9.470363348 9.288461779 9.21623566 9.527251554 9.249288066 9.494869559 9.52089429 9.776187712 14026061 type_III_secretion virulence secretion Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 9.529304195 9.253663862 9.237377956 8.878758174 8.879482485 9.222946316 8.930962648 9.043650616 8.730633885 8.711444216 8.693689905 168151 nitA Organic Remediation Aromatics Other aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;genus:Fusarium; 8.546028598 8.86699568 8.212724551 8.343799584 8.418198959 8.090259185 8.945746056 8.014924351 7.655463877 7.711293108 8515785 cumA Organic Remediation Aromatics Other aromatics uncultured bacterium 8.516429292 8.511142763 8.707393938 7.811761095 7.931497714 7.958206535 8.324175511 8.059674595 8.795138926 8.145605926 8.094281809 8.171824555 83724530 nasA Nitrogen Assimilatory N reduction Ralstonia solanacearum UW551 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 9.100346092 9.389257266 8.939568263 8.871220624 8.687975434 8.846239732 9.418999179 8.913583994 9.386333947 8.591653422 8.646451746 8.511591975 83594971 hrcA Stress Heat shock Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 8.628763593 8.3878505 8.383817016 8.071587481 8.263574622 8.4776612 8.611831436 8.35723426 8.629049453 8.447766514 8.500326593 8.474387927 149202675 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.98675686 8.926418196 9.190425072 8.384146379 8.492336723 8.63541653 8.607144346 8.294896547 8.769871673 8.458841247 8.39674531 8.592561677 114194989 pheA Organic Remediation Aromatics Other aromatics Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 8.832529913 9.317509311 9.180394332 8.051521365 8.356319621 8.542203199 8.323702214 8.446045394 8.560472479 8.357696785 8.570437156 8.536532871 133739792 pimF Organic Remediation Aromatics Aromatic carboxylic acid Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 8.325254227 8.239255584 8.287547924 7.811724952 7.882443302 7.82504491 8.13850174 7.404273937 8.178503616 7.522790683 7.765808808 7.721172231 229362390 glnA Stress Nitrogen limitation Pseudomonas fluorescens SBW25 7.735236993 7.688981046 7.471031151 7.311852037 7.4894524 7.741843919 7.38537501 6.989529018 7.670226455 19113568 amyA Carbon cycling Carbon degradation Starch Schizosaccharomyces pombe 972h- superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Schizosaccharomycetes;order:Schizosaccharomycetales;family:Schizosaccharomycetaceae;genus:Schizosaccharomyces;species:Schizosaccharomyces pombe; 7.104581117 7.111742986 7.564132284 85670092 sigma_70 Stress Sigma factors Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 9.335394944 9.298151131 9.14911404 9.15256872 8.988573714 8.7532043 9.13888536 9.400865216 8.938232995 9.104293415 9.169233826 8.852144748 237719013 ahpC Stress Oxygen stress Bacteroides sp. 2_2_4 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 6.89943471 7.636193922 7.469219692 7.219481228 7.652290289 7.495918145 7.73102365 224712632 hao Nitrogen Nitrification uncultured planctomycete 9.026521916 8.987935554 8.82268533 8.369747575 8.623955395 8.13960251 8.796424025 9.01750379 8.448975386 121592455 CopA Metal Resistance Copper Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 8.666005466 8.62936928 8.304885387 8.158396719 7.986868693 7.94921146 7.718942109 7.913821105 8.097160213 7.855000964 8.011373817 8.148675093 83643106 amyA Carbon cycling Carbon degradation Starch Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 8.709957644 8.754063483 8.486624614 8.481496259 8.708464353 9.205449431 8.855123983 8.909686914 8.644186172 8.805786928 8.582958941 160879970 APS_AprA Sulphur adenylylsulfate reductase Clostridium phytofermentans ISDg superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium phytofermentans; 8.739968907 8.627539566 8.727237929 8.081984995 8.035590897 8.182545589 8.638006356 8.517365315 8.023588993 8.492991743 110818358 TerD Metal Resistance Tellurium Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 9.041398319 9.024209507 8.865235756 8.491479121 8.649214705 8.295697691 8.492299849 8.360097883 8.532502824 8.416881654 8.345748416 8.261438023 160897479 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.533290494 8.717068594 8.400711757 8.552885306 8.686781093 8.326264412 8.316377032 8.560750072 8.278145503 8.580449564 8.659014643 8.767326099 118763373 cumB Organic Remediation Aromatics Other aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 9.433579374 9.458461875 9.965763514 8.962584705 8.617128151 8.818531605 8.970593144 8.926398952 9.153411629 9.195342158 9.336731148 9.444603186 110597724 grpE Stress Heat shock Chlorobium ferrooxidans DSM 13031 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium ferrooxidans; 6.719044913 6.671725652 13423948 pcaG Organic Remediation Aromatics Other aromatics Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 9.526795858 9.277804662 9.381181528 9.740004869 9.706703006 9.492296027 9.57687818 9.991994174 9.567663878 9.900841624 9.787826566 9.857581293 187477166 nahA Organic Remediation Aromatics Polycyclic aromatics Bordetella avium 197N 8.701857483 8.683467207 8.827336183 8.824043387 8.731860135 8.451284638 8.603787506 8.617273387 8.556590788 8.47657794 8.491379548 178468918 amyA Carbon cycling Carbon degradation Starch Streptomyces griseus subsp. griseus NBRC 13350 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 8.844297474 8.908620347 8.74439466 9.13509574 8.818077742 8.676126222 9.300143164 9.08398474 8.868828198 9.08138541 9.051682903 9.049860394 163811643 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 8.161932207 7.409472553 7.456954057 7.663876934 8.15314569 169627455 katE Stress Oxygen stress Mycobacterium abscessus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 9.291611251 9.247143388 9.218545549 8.792536326 9.110584371 9.250888774 9.015600722 9.084423156 9.119618853 9.027719021 9.436585098 8.972532838 67536812 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 8.428878544 7.954267449 8.116171093 7.846703565 7.535528567 7.911007661 7.956630243 7.885410059 7.537591925 7.136884103 7.647065353 83814764 fnr Stress Oxygen stress Salinibacter ruber DSM 13855 8.430929097 8.514410485 8.441475819 8.219427881 8.272042067 8.28460155 8.653698147 8.609350714 8.244133026 8.500856359 8.568424384 8.469979655 266627085 Tet Antibiotic resistance other Caulobacter segnis ATCC 21756 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 8.419407228 8.620550825 8.747728073 8.561519381 8.458617673 8.155083966 7.999856367 8.346471542 8.747715218 8.15244462 8.204066611 8.343813897 262335245 AceB Carbon cycling Carbon degradation others Rhodothermus marinus DSM 4252 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 8.990123066 9.063616674 8.747662576 8.838358488 8.969698675 8.679846767 8.746043697 8.846460549 8.896026106 8.993822588 8.879944342 8.525913229 221083209 dehH109 Organic Remediation Chlorinated solvents Variovorax paradoxus S110 9.345409028 9.471412571 9.453432014 9.224956785 9.423644327 9.486929434 9.431275262 9.962004269 9.445884707 9.845407879 9.829790118 9.984212659 182382480 narG Nitrogen Denitrification uncultured bacterium 8.738166437 8.720597663 8.87265786 8.270145838 8.262174472 8.117698387 8.051510212 7.937081673 8.208977117 8.187489075 7.87554329 8.25904556 199589932 fnr Stress Oxygen stress Lactobacillus rhamnosus HN001 9.172784619 8.74708679 8.973036004 8.970496559 8.848038932 9.115802666 8.973339353 9.170495998 8.993515097 9.077429233 9.52376847 9.205167521 257457793 sigma_70 Stress Sigma factors Treponema vincentii ATCC 35580 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema vincentii; 8.570429445 8.309239985 8.677609324 8.100942714 7.94071002 7.821709984 7.611950106 7.606544258 8.073100904 7.813799016 7.723711273 8.042173788 229322093 NirB Nitrogen Assimilatory N reduction Rhodococcus erythropolis SK121 8.956331837 8.671960918 8.717177739 8.029912111 8.41166956 8.55887269 8.923568696 7.849303037 8.936634151 8.229358027 8.297891033 8.436889596 146192974 sox Sulphur Sulphur oxidation Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.815830909 9.034033577 8.436587612 8.950016399 9.16630174 9.181704725 8.828259441 9.485063382 8.874233544 9.109103861 8.678455609 8.996524711 119497609 tfdA Organic Remediation Aromatics Chlorinated aromatics Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 8.26357814 8.736111725 8.559554171 8.18750795 8.313845896 8.464694105 8.299958028 8.715627447 8.077712819 8.647004934 8.761379873 8.562130051 159043242 AceA Carbon cycling Carbon degradation others Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 7.980933343 8.035097544 8.008268251 7.742504104 7.740945467 7.82430403 7.644083696 95930255 ZntA Metal Resistance Zinc Desulfuromonas acetoxidans DSM 684 8.698643646 8.74507642 8.45462477 8.095801602 8.274298967 8.009879182 8.308700203 8.451712359 8.636027061 151282291 pimF Organic Remediation Aromatics Aromatic carboxylic acid Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 8.685604435 8.583085496 8.138566887 8.201815616 7.984758078 8.10043686 8.250340444 7.696210634 8.605166499 8.216021812 8.240756722 8.175369426 90335420 linB Organic Remediation Pesticides related compound Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 8.822095923 9.382528462 9.398515935 9.393546435 9.489781396 9.494675129 9.589101746 9.905482613 9.692198281 10.11694568 9.894798911 9.591243137 34392447 glucoamylase Carbon cycling Carbon degradation Starch Penicillium chrysogenum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 8.266350926 8.129327963 8.463656844 7.762368933 8.560229313 7.827689672 8.397316148 8.668881803 8.423858711 187940062 TerD Metal Resistance Tellurium Pseudomonas aeruginosa superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.137903206 8.289994388 7.644159381 7.551477174 7.481674249 8.056673229 7.689738924 7.427897493 7.346081563 7.673959924 7.468825074 119448505 grpE Stress Heat shock marine gamma proteobacterium HTCC2143 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.463886502 8.556209932 8.481344437 8.058064196 8.249184213 8.449323209 8.1635464 8.583763946 8.374332078 8.205920332 8.33508093 8.352574986 85669819 pstB Stress Phosphate limitation Roseovarius sp. 217 9.489065083 9.549577907 9.533300983 9.09750719 8.889291697 8.763225878 8.991732135 8.87243252 9.080863371 8.960968353 8.92218968 9.109513675 77975106 B_lactamase_C Antibiotic resistance Beta-lactamases Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 9.01601977 8.515561641 9.171013021 8.38009663 8.312413745 8.230908369 7.989066465 7.86694757 8.316416805 8.337904161 8.2531979 8.388730289 199594029 narG Nitrogen Denitrification uncultured bacterium 8.704649947 8.256805333 8.246841935 7.924174225 7.853231155 7.816586462 7.569774357 7.741944438 8.494081203 7.967076243 194150861 helicase_family_4_DnaB_like Bacteria phage REPLICATION Mycobacterium phage Porky order:Caudovirales;family:Siphoviridae; 9.04343425 9.23730691 8.738064774 8.221194166 8.312914554 8.773445777 9.091497395 8.472252846 8.580607359 8.474776818 8.478259061 239598297 narH Stress Oxygen limitation Staphylococcus warneri L37603 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus warneri; 8.469939147 7.912489472 8.067216339 8.161112642 7.858322579 8.424806848 8.670426666 8.614407135 33320468 dsrA Sulphur sulfite reductase Desulfovibrio halophilus superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 8.216571743 8.152149373 7.473948419 7.712694557 7.710948718 7.716608042 7.463980439 8.04434984 7.906290353 7.8639744 7.711964838 258521952 pcc Carbon cycling Carbon fixation Corynebacterium genitalium ATCC 33030 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium genitalium; 8.032831509 8.420265409 7.936507982 8.149163696 7.981172003 7.458515752 7.88122317 8.259544751 7.837423491 7.530667028 8.048612814 73762838 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.015933472 9.399092932 9.098319889 8.885427743 9.02675102 9.399518037 9.798646869 9.347123136 9.277094008 9.067816743 9.173219797 9.145339628 119474019 katE Stress Oxygen stress Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 7.390541921 7.501082653 7.473599626 7.219919199 7.139420283 7.850912418 262198633 proV Stress Osmotic stress Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Haliangiaceae;genus:Haliangium;species:Haliangium ochraceum; 9.037323326 9.076660587 8.913808373 9.389448824 9.501178102 9.369822261 9.212394846 9.866115849 9.32539984 9.674600763 9.431592773 9.373087503 115432148 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.36483458 8.375965085 8.054595615 8.439639115 8.49343065 8.571781219 7.816025836 8.438692979 8.179226281 8.48561459 8.688716866 7.993736001 39650352 nagG Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.009830156 9.128101267 9.276419347 8.465057531 8.407391056 8.303465263 8.420709775 8.369452968 8.295788927 8.393297335 8.415435776 8.520716976 256679349 sigma_24 Stress Sigma factors Streptomyces sp. SPB78 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.877068487 8.719494446 8.759890936 8.670897072 8.778903038 8.625612444 9.055482135 8.82394608 8.557708589 8.934550471 9.075603726 8.839836956 257057704 pstB Stress Phosphate limitation Saccharomonospora viridis DSM 43017 8.686238042 8.993213187 8.558359465 7.705759724 7.671479287 8.122069365 7.79876946 8.408870203 8.20120213 8.163880496 8.07600118 227843089 ppk Phosphorus Phosphorus utilization Mobiluncus mulieris ATCC 35243 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus mulieris; 8.634797483 8.729407194 8.917856118 8.660593532 8.752003198 8.979237967 8.972642051 9.126945521 8.939610151 9.534491132 9.318629219 9.04823461 90954595 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.722561801 8.304019024 8.332217877 8.284621188 8.247604935 7.953168076 8.110958595 8.431339043 8.065228559 8.35245109 8.199309897 150391233 APS_AprA Sulphur adenylylsulfate reductase Alkaliphilus metalliredigens QYMF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus metalliredigens; 8.15358572 8.3895647 7.477846792 7.472502352 7.503166342 7.222853414 7.321747907 7.601886614 157371006 SMR_antibiotics Antibiotic resistance transporter Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 9.000358812 9.216274811 9.059293533 8.45120587 9.020960733 9.321225601 9.39679834 9.486491873 9.015620351 9.485690539 9.550871942 9.385521053 62148536 CadA Metal Resistance Cadmium Chlamydophila abortus S26/3 superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Chlamydiaceae;genus:Chlamydophila;species:Chlamydophila abortus; 8.757959849 8.475624934 7.726136174 7.737016811 7.607564289 7.428417377 7.542387788 7.814540608 7.634844053 7.624123025 7.632487957 40787270 nagG Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. DK17 8.975586742 8.960110816 8.384123299 8.379564593 8.340389145 8.506445057 8.735899662 8.509942241 8.029989986 8.048963804 7.720289281 188026261 nrfA Nitrogen Dissimilatory N reduction Providencia stuartii ATCC 25827 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia stuartii; 9.0751055 9.251964004 8.937657626 9.087367773 9.243695014 9.094774897 8.917252293 9.588586527 8.915249859 9.275529805 9.138806645 9.148814524 113524907 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.904477855 8.868665843 8.914329787 8.126346923 8.17161758 8.653524615 8.544041821 7.875999182 8.705539866 8.186119653 8.46112162 9.03177532 197119539 sigma_24 Stress Sigma factors Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 8.76120655 8.966339314 8.819221033 8.337438164 8.428155316 8.590459339 8.671794006 8.892056525 8.523542469 8.789535285 8.699621427 8.958472237 209869140 dsrB Sulphur sulfite reductase uncultured marine bacterium 8.401131519 8.288105609 8.794991564 8.071202216 7.825274974 7.804588728 7.755690263 7.774215931 7.765856655 7.776089987 7.891589265 8.196847568 54027002 TerZ Metal Resistance Tellurium Nocardia farcinica IFM 10152 8.72569459 8.520052055 8.810768908 8.494931444 8.494474797 8.358181816 8.293728479 8.549538334 8.770470016 8.540718738 8.578104654 8.607123521 33563759 ZntA Metal Resistance Zinc Bordetella pertussis Tohama I superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella pertussis; 9.308497628 9.51830134 9.269593099 9.075611791 9.759223267 9.942145998 9.648617687 10.09184351 9.577716488 9.424760558 9.514505215 21225107 pstB Stress Phosphate limitation Streptomyces coelicolor A3(2) 8.519608566 8.482516574 8.570422732 7.805544206 7.656532057 8.087972026 8.111322789 7.684457773 8.023451152 7.819457283 7.716905507 7.928753432 89512810 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.525005558 7.574928999 7.544327774 6.982655789 7.113209201 7.671602148 84497846 ppx Phosphorus Phosphorus utilization Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 8.378296908 8.375770544 8.42166914 7.974771523 7.992475262 8.126777574 7.953152208 8.079632452 8.298680729 7.857534378 7.904449797 7.74720452 260437756 nplT Carbon cycling Carbon degradation Starch Butyrivibrio crossotus DSM 2876 8.095252961 7.638585584 7.074411034 7.270504669 7.212549569 7.119543904 6.836778648 7.403846824 6.95617434 6.981675335 7.435659392 167747973 pstS Stress Phosphate limitation Anaerostipes caccae DSM 14662 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Anaerostipes;species:Anaerostipes caccae; 9.1829958 9.053760386 8.942581042 8.291596378 8.413174025 8.345252609 8.210911936 8.221432798 8.389091237 8.35993024 8.45872274 8.496708638 21221525 PobA Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces coelicolor A3(2) 8.875508172 8.935246442 8.653125959 8.509749864 8.450441375 8.652492454 8.820005145 8.515333924 8.717566206 8.787542471 8.748396503 8.724940111 113868126 alkK Organic Remediation Others Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 7.174762445 7.169042579 7.075741049 6.942169515 7.424372258 6.96764117 6.947759842 7.225997505 77166113 nitA Organic Remediation Aromatics Other aromatics Nitrosococcus oceani ATCC 19707 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 8.264686609 8.558008288 8.555680031 7.995134688 7.726504727 7.982340232 7.770591691 7.921184016 8.1422918 8.13242749 8.008765057 8.276096517 33237434 ppx Phosphorus Phosphorus utilization Prochlorococcus marinus subsp. marinus str. CCMP1375 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 8.168052562 8.136216042 8.216018805 7.643759751 7.803947572 7.585257782 7.159374669 7.691037587 7.300131636 7.094888636 7.469471454 15186893 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.659354969 8.356168321 7.876727993 8.637231363 8.55808475 8.733869498 8.506510542 8.385639242 8.35346657 83744449 PobA Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces hygroscopicus 9.588875568 9.55747817 9.526943902 8.804071532 8.721699244 8.419583935 8.292982933 8.484922627 8.160869536 557475 ara Carbon cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 8.083334828 8.288740787 7.290538916 7.092666581 7.390381433 7.087698488 116672350 dnaK Stress Heat shock Arthrobacter sp. FB24 8.84694677 8.78019581 8.958863718 8.734270819 8.44361276 8.15148958 8.811767876 8.204585398 8.677224624 46520001 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9.053095 8.838064816 9.017006951 8.449988125 8.32264331 8.331700961 8.057165484 8.113926323 8.08312323 7.893237314 8.349063174 161378972 ArsC Metal Resistance Arsenic Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 8.741597833 8.728953535 9.046227193 8.540705051 8.727972519 8.755948288 8.692514515 8.851683775 8.854880673 8.538122552 8.909470936 8.686031701 77681325 mnp Carbon cycling Carbon degradation Lignin Trametes cervina 8.71041542 8.812515797 8.707847627 8.234360055 8.516961616 8.611223777 8.478862312 8.427641522 7.973888468 257057127 hly virulence hemolysin Saccharomonospora viridis DSM 43017 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora viridis; 11.29971856 11.24733121 11.24886665 10.36885192 10.43732202 10.57327105 9.87061359 10.8500644 10.32327007 10.64324184 10.60891253 220962102 linB Organic Remediation Pesticides related compound Ancylobacter aquaticus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Ancylobacter; 8.338864712 7.968239233 8.071651781 7.468719876 7.593095088 7.984497618 8.07918942 8.10126622 7.747731428 7.556390317 7.685423386 8.328281819 154280953 Catechol Organic Remediation Aromatics Other aromatics Ajellomyces capsulatus NAm1 8.870906795 8.824721057 8.770237277 8.433887859 8.621271661 9.116002901 9.16252587 8.871905269 8.600372006 8.829927665 8.849192079 8.743690014 6322485 nbaC Organic Remediation Aromatics Nitoaromatics Saccharomyces cerevisiae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Saccharomyces; 8.449619577 8.243542062 8.273700314 7.858414337 7.605100671 7.640493214 7.367236868 7.268743298 7.838202577 7.602526679 7.485757758 7.642807472 229468987 amyA Carbon cycling Carbon degradation Starch Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 8.749064322 8.89481665 8.915388452 8.674239237 8.809111599 8.752711022 8.692726684 9.311796742 8.461176568 8.950342958 8.915325367 9.040681719 227069597 NiR Nitrogen Assimilatory N reduction uncultured archaeon 8.027975438 7.868788029 8.174010293 7.844268756 7.856783712 7.523835291 7.410877914 7.923960757 7.9377755 7.730204263 7.511296378 7.793046509 169824290 pstB Stress Phosphate limitation Finegoldia magna ATCC 29328 7.481265264 7.234383915 7.202705546 148260633 cytochrome_bd Bioleaching Electron transport Acidiphilium cryptum JF-5 8.488286739 8.304579088 8.521665498 8.137024117 8.058863335 8.068862081 8.104746318 8.040506604 8.329474881 8.123254685 8.128512121 8.003086525 115377153 pstA Stress Phosphate limitation Stigmatella aurantiaca DW4/3-1 8.228898197 8.125847403 8.522363336 7.620845433 8.356612634 8.302903311 8.325283371 7.839757602 8.449051328 8.021412279 7.95290337 8.143325565 160917674 narG Nitrogen Denitrification uncultured bacterium 8.811831295 8.489054158 8.760324441 8.203612669 8.037131077 8.242565065 7.989952227 8.258490851 8.188218877 8.235277396 8.307176683 8.313228035 178467913 SMR_antibiotics Antibiotic resistance transporter Streptomyces griseus subsp. griseus NBRC 13350 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 8.179118612 8.208834769 7.574562041 7.611537332 7.643927163 7.636493858 7.118634154 8.14081549 7.413982448 7.264665579 7.613729063 220706928 CopA Metal Resistance Copper Geobacillus sp. Y412MC61 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.052827527 8.452510869 7.493703124 7.542190178 7.629045759 7.310995583 7.208098278 7.760338834 7.410096865 7.475114612 7.710793656 94498213 AceA Carbon cycling Carbon degradation others Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.45110521 8.978859953 8.277541118 8.110407841 8.048826158 8.323110268 8.020150009 8.295158916 7.990648049 7.704872157 7.996761369 62390077 narG Nitrogen Denitrification Corynebacterium glutamicum ATCC 13032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 8.180866362 8.24019538 8.463094114 8.333978811 8.14286838 8.20661664 8.330920517 8.196768817 8.217849282 8.347237098 7.929321531 257201089 ara Carbon cycling Carbon degradation Hemicellulose Roseburia intestinalis L1-82 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia intestinalis; 8.903909506 9.079583331 9.38876373 8.88911893 8.579177035 8.606865867 8.012381984 7.801063852 8.406102125 8.402611841 8.58768568 161160558 ppx Phosphorus Phosphorus utilization Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 8.937399362 8.524126567 8.957998613 8.714315607 8.477217449 8.930985285 8.602847705 8.489661818 8.676698437 8.266073942 114538901 grpE Stress Heat shock Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 8.250478754 8.111307971 7.650037628 7.840208372 8.007585859 8.060702261 7.694833203 7.854767837 7.74025364 238871119 sigma_32 Stress Sigma factors Edwardsiella ictaluri 93-146 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella ictaluri; 8.774882556 8.588573824 8.836219822 9.015157691 8.98103112 8.765492014 8.736458273 9.344279102 9.002612683 8.95021933 8.639085789 8.863785098 247538086 narI Stress Oxygen limitation Dickeya zeae Ech1591 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 8.707924077 8.857137014 9.013723651 8.478908628 8.663035154 8.509767978 8.51940602 8.755041485 8.540508096 8.886085522 8.91962908 8.812290644 197333185 amyA Carbon cycling Carbon degradation Starch Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 9.46133697 9.411756514 9.412958117 8.81000823 9.568785281 9.552443964 9.602541561 8.43725375 9.927383232 8.936078308 9.151343806 9.192631806 109698930 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 9.289268227 8.707797485 8.559071716 8.977700135 8.89723571 8.763389798 8.710984386 8.907678562 8.930493765 8.997928533 9.115026951 8.702401901 229536181 Tet Antibiotic resistance other Planctomyces limnophilus DSM 3776 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces limnophilus; 8.342068139 8.220974441 8.543468661 7.754593951 7.624384081 7.743425872 7.542935476 7.238155941 7.77439652 7.8185113 7.241833209 7.786576788 170769693 oxyR Stress Oxygen stress Escherichia albertii TW07627 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 8.705513612 8.4545045 8.653802606 7.759779606 7.879675879 7.952139068 7.638309259 7.300277054 8.115817833 7.646303553 7.795075261 7.819866423 75674396 dnaK Stress Heat shock Nitrobacter winogradskyi Nb-255 7.973332935 8.373690846 8.068541098 8.399966737 7.96437588 8.670507892 8.29827866 8.145446212 89895061 bco Organic Remediation Aromatics Aromatic carboxylic acid Desulfitobacterium hafniense Y51 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 8.705448204 8.832653057 8.761849949 8.218759867 8.015583949 8.107328302 7.849963596 7.653213236 8.41717133 7.859067965 7.791270032 8.087079513 148502260 bphA Organic Remediation Aromatics Polycyclic aromatics Sphingomonas wittichii RW1 9.287599624 9.166785877 9.332587312 8.659149706 8.644506669 8.625458896 8.591395614 8.370702642 8.728763017 8.509009811 8.622665299 8.768434014 118008511 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 8.952221375 8.787379338 8.948697398 8.880471483 8.773678809 8.6621078 8.632193709 8.975660921 8.792045948 8.959214724 9.079696102 8.484711186 184199875 pimF Organic Remediation Aromatics Aromatic carboxylic acid Kocuria rhizophila DC2201 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 8.410829384 8.084742938 8.285490774 8.14110625 8.229902619 8.078451022 7.94050685 8.213943661 8.572678304 8.503592027 8.520037719 8.445344051 157405749 linB Organic Remediation Pesticides related compound Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 8.494581598 8.639460764 8.663848051 8.42491314 8.372260785 8.38556481 8.259532543 8.591898987 8.223039972 8.291226887 8.245619054 157084263 silC Metal Resistance Silver Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 9.455459391 9.299823757 9.224748672 9.563005117 9.461443506 9.498956725 9.441536589 10.06389985 9.077122704 9.535652725 9.548133459 9.827402416 219997696 pilin virulence pilin Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 9.155019117 9.252534183 9.600126391 8.681805589 8.593777222 8.65043789 8.698463301 8.639073678 8.724979875 8.751037019 8.748551894 8.951429987 157913102 sox Sulphur Sulphur oxidation Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 8.163710859 8.098978672 7.594393768 7.678164703 7.6730345 8.177450862 7.656023185 7.912870435 7.678752561 8.206626047 148845872 sigma_70 Stress Sigma factors Planctomyces maris DSM 8797 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces maris; 9.013682142 8.545285689 8.481754776 8.872183641 8.202365085 8.458855975 8.772516088 8.614815828 8.373636752 8.455382145 8.459821566 8.393862654 23347745 SMR_antibiotics Antibiotic resistance transporter Brucella suis 1330 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Brucella;species:Brucella suis; 8.567115035 7.916958035 8.262918668 7.785129782 7.797667453 8.272845003 7.949644293 7.503824588 8.156916456 7.356541354 7.503692005 7.75503969 218751152 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 9.258422847 9.146886674 9.181647337 8.607393282 8.748512137 8.720896884 9.14574752 8.667781788 9.382742547 8.930667088 8.863475185 8.818761534 133739900 pimF Organic Remediation Aromatics Aromatic carboxylic acid Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 7.163012489 7.397204146 7.273823923 7.339188954 7.411242287 7.579727566 7.707990943 7.549140063 212008117 pstB Stress Phosphate limitation Thermococcus onnurineus NA1 8.678567705 8.668969947 8.614632933 8.350412127 7.993430331 7.781183138 7.687408466 7.433845958 7.74978776 8.123886396 8.217749059 171277508 ara Carbon cycling Carbon degradation Hemicellulose Bifidobacterium dentium ATCC 27678 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium dentium; 9.81395182 10.01069807 9.588709677 9.401451139 9.361127976 9.533146358 9.885933971 9.329108444 9.800668586 9.340554968 9.421272354 9.371369847 163739537 pcaG Organic Remediation Aromatics Other aromatics Phaeobacter gallaeciensis BS107 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 8.532381065 9.037557351 8.583902249 7.965902934 8.237967787 8.237980352 7.834243169 8.718760742 7.987148172 8.209127347 8.247344227 62120299 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 8.207874455 8.179124669 7.171977455 7.156681477 7.326072782 7.312150044 7.612667994 7.082737436 7.519320329 7.41206501 169793364 narG Nitrogen Denitrification uncultured bacterium 8.891062685 8.722924225 8.55553715 8.894528761 8.773745059 8.984131736 9.05004497 9.041229075 8.969596064 8.886496553 8.825167965 8.811264248 116228133 ahpC Stress Oxygen stress Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 8.522659979 8.662084578 8.837663846 8.040507145 8.074285619 7.891394664 7.721706976 7.791399482 8.067337212 7.991442516 7.805956282 8.032959905 260892997 fnr Stress Oxygen stress Ammonifex degensii KC4 9.367232327 9.093667922 9.267550124 8.720016995 8.504947133 8.609100322 8.415188768 8.522399389 8.403208535 8.586584208 8.399347449 8.780774224 167769981 CadA Metal Resistance Cadmium Anaerotruncus colihominis DSM 17241 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Anaerotruncus;species:Anaerotruncus colihominis; 9.13267049 8.629123617 8.942861352 9.25191266 8.986403706 8.7601565 9.211012323 9.053195088 9.021830059 9.092284448 9.378980704 8.719030444 118469867 akbF Organic Remediation Aromatics BTEX and related aromatics Mycobacterium smegmatis str. MC2 155 8.62188991 8.513644578 8.539321815 8.210185829 7.939619316 8.032382754 8.337979646 8.067003699 8.283760792 7.98264012 8.210047487 7.787912391 88863253 alkB Organic Remediation Other Hydrocarbons Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 10.49219627 9.890108327 10.13879365 10.61226221 10.44523444 10.118008 10.54040243 10.32829698 10.23230276 10.11150473 10.14980185 10.16675756 107099413 silC Metal Resistance Silver Pseudomonas aeruginosa PACS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.389653828 8.251901746 8.363669621 8.38079397 8.116614544 8.180315983 8.555213508 8.332151204 8.580044628 8.528971244 8.533179845 118570847 SMR_antibiotics Antibiotic resistance transporter Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 8.298806183 8.108520498 8.106372082 7.769448011 7.459429517 7.447393972 7.041772171 7.268197673 7.869144603 7.53574978 7.211100853 10175620 ArsC Metal Resistance Arsenic Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 8.601125902 8.578736567 8.680836412 8.23626053 8.055027298 8.203769229 8.348953624 8.169302961 8.299835072 8.465475371 8.594491812 8.254723899 242805075 MFS_antibiotic Antibiotic resistance transporter Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 8.265001597 8.30134795 8.185294788 8.20904359 8.637892884 7.991984096 8.587406245 8.403737567 8.433390828 8.518940943 8.318501215 119948920 oxdB Organic Remediation Aromatics Nitoaromatics Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 8.569410796 8.378390009 8.526817933 8.329265673 8.156850421 7.922199148 7.848071643 8.126804933 8.19955352 8.119544843 7.921995115 8.107954851 86739031 glnA Stress Nitrogen limitation Frankia sp. CcI3 9.54944289 9.281542947 9.353715444 8.862841076 8.883130326 8.79894269 9.123046235 8.902161981 8.907149495 8.758660396 8.935450513 8.999351043 197934530 ara Carbon cycling Carbon degradation Hemicellulose Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 9.057350181 8.761126859 9.14097287 7.828556001 8.044433073 8.18686489 7.821803433 8.575556257 7.938213652 7.847129727 8.237896277 114339594 sigma_24 Stress Sigma factors Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 7.788900181 7.762595746 7.521184343 7.385736023 7.175985141 7.62206292 187720318 phtA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8.474279581 8.755075972 8.573023992 7.492132924 7.85259667 7.941631254 8.573522975 7.973423436 8.625341853 7.920182681 8.057572157 7.828705674 154367883 cumA Organic Remediation Aromatics Other aromatics Pandoraea pnomenusa 8.330366994 8.128292688 8.400697846 7.691812111 7.668134693 7.638076059 7.519032529 7.425366838 7.654175993 7.496272349 7.677705276 218751126 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.627449198 8.340908946 8.356815952 8.347408295 8.617872906 8.743854657 9.026831226 8.683594237 9.042266085 9.111040055 151366835 nrfA Nitrogen Dissimilatory N reduction Shewanella baltica OS185 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 8.324589134 8.455281126 8.286124991 7.990761617 7.890983979 8.166379909 8.025390819 8.082148649 8.14228141 8.007775799 8.15459551 8.090840409 55791916 catechol_B Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 8.170333688 8.245122062 7.385772134 7.527026846 7.69828332 7.80817343 8.084440803 7.216258901 7.215290024 257419265 obgE Stress Radiation stress Enterococcus faecalis T11 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus faecalis; 8.522031579 8.579511373 8.771645409 7.931965819 7.741491011 7.873662528 7.310035725 7.849491645 7.543009902 7.695770763 8.04401693 112463925 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.768755793 8.703494061 8.384650883 8.27663177 8.310223104 8.034541582 8.113043705 8.456697679 8.748124107 8.185605219 8.261473908 8.342551027 251771534 glucoamylase Carbon cycling Carbon degradation Starch Leptospirillum ferrodiazotrophum superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 8.892061769 8.874950271 9.089152237 8.352421666 8.447431057 8.25129747 8.158103846 8.493457939 8.216947388 8.301728137 8.201207697 8.397910414 88940385 nitro Organic Remediation Others Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 8.721068993 8.668336962 8.920279122 8.258809217 8.021172358 8.359402393 8.910241268 8.481037888 8.798910233 8.470568921 8.554246118 8.200049012 86607525 ureC Nitrogen Ammonification Synechococcus sp. JA-2-3B'a(2-13) superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.36730496 8.550549275 8.850348349 8.272605446 8.268342809 8.200453762 8.185553725 8.554582614 8.4490724 8.561301438 8.32966797 8.385472654 238783647 cda Carbon cycling Carbon degradation Starch Yersinia bercovieri ATCC 43970 8.835135851 8.726698508 8.299618229 8.39486736 7.545148117 7.870262143 8.134884273 7.91349212 7.94857824 7.997545148 7.333038861 158450464 ArsC Metal Resistance Arsenic Coprococcus eutactus ATCC 27759 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Coprococcus;species:Coprococcus eutactus; 7.006986243 6.927239406 7.143423663 91779182 benAB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 10.14428525 10.26206423 10.30505395 10.60717509 10.76603064 10.55462189 10.35567011 10.74463084 10.37699078 10.74212312 10.64604579 10.664366 148264784 arcB Stress Oxygen limitation Geobacter uraniireducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 8.44288117 8.143458722 8.568143994 7.787687538 7.714039342 7.760318451 7.446605965 7.423350229 8.209035713 7.685926884 7.321635154 7.892515253 76803723 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 8.271351903 8.124597513 7.923876807 8.002399753 7.822125549 8.116894545 7.899101295 7.918246576 8.03202812 7.758686046 7.428282574 194472638 amyA Carbon cycling Carbon degradation Starch Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 8.097021248 8.217578409 7.054612604 7.419686216 7.443874147 7.644522872 6.674636011 7.882657601 7.115839552 7.385096158 7.547580606 184199856 pimF Organic Remediation Aromatics Aromatic carboxylic acid Kocuria rhizophila DC2201 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 9.807006748 9.940208174 9.838695799 9.665384499 9.545481367 9.595158807 9.309436343 9.863295963 9.19415798 9.578937761 9.63305291 9.72896967 162448335 pcpB Organic Remediation Herbicides related compound Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 8.10768492 8.336458499 8.265213816 8.195459997 8.592573055 8.816760526 8.435946884 8.622499068 8.385188547 8.570976659 8.894240602 8.530947434 90199375 scnABC Organic Remediation Others Mycobacterium vanbaalenii PYR-1 8.226514721 8.049379597 8.032847901 8.20089468 8.238538954 8.264308668 8.255278825 8.471893279 8.500915144 8.673448289 8.412610897 8.163675677 59714286 MFS_antibiotic Antibiotic resistance transporter Vibrio fischeri ES114 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Vibrio fischeri; 8.748249992 8.230253557 8.933069142 8.074086245 7.377395323 7.660539143 8.021015977 7.625682598 7.340096981 8.04541641 7.514437264 8.326861611 110168583 obgE Stress Radiation stress Trichodesmium erythraeum IMS101 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Trichodesmium;species:Trichodesmium erythraeum; 8.650709731 8.457126747 8.467599525 8.1687196 7.568343626 7.715841354 7.44818267 7.66962435 7.991531631 7.784365425 7.844072031 7.748269081 50955399 pstB Stress Phosphate limitation Leifsonia xyli subsp. xyli str. CTCB07 8.323382257 8.258154451 8.369370847 8.039302945 7.919328189 7.918260286 7.726768097 8.165915409 8.294308995 7.919650092 7.70053578 7.882922236 209518590 phn Organic Remediation Herbicides related compound Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.899140905 8.780782586 8.712899989 9.334850251 9.331461202 9.021040451 9.440910748 9.422509859 8.865132158 9.175442404 8.883614746 8.93818981 146400469 NDEDFP_EPS Bioleaching EPS Acidiphilium cryptum JF-5 8.671163033 8.595120289 8.258945802 8.324500026 8.139952763 8.544874901 8.263934472 8.593064613 8.74174781 8.725868977 8.517341409 229917162 rubisco Carbon cycling Carbon fixation Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 9.102274396 8.962468368 8.542359181 8.165663846 8.521928698 8.161725258 8.095168272 7.912811653 8.37173616 8.319830233 8.185974497 8.504810543 116695186 fnr Stress Oxygen stress Ralstonia eutropha H16 9.105892032 8.941538412 8.96183486 8.964496217 8.728635366 8.802603361 8.853098976 8.829043428 8.931224124 9.03438037 9.233068897 8.793783858 196182186 gyrB other category gyrB Microcoleus chthonoplastes PCC 7420 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus chthonoplastes; 9.175433044 9.546780147 9.184258691 8.922052499 8.711110205 8.925923952 8.570021322 9.076621094 8.759465115 9.068421106 9.05417036 9.133467953 238925727 hly virulence hemolysin Eubacterium rectale ATCC 33656 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium rectale; 8.820552289 8.807832478 8.953732165 8.126607104 8.088170496 8.00235894 7.934065454 7.68656445 7.986107172 7.620420001 8.15187973 119817911 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida W619 8.831008089 8.942408824 9.051041897 8.257706535 8.174549325 8.29607932 8.135971687 7.871632892 7.993457765 7.977653976 7.931373508 8.325759168 56809455 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 9.163006305 8.991811907 9.20172411 8.650393262 8.542169193 8.43988299 8.437804076 8.595671645 8.519784199 8.492907932 8.464081964 8.664566991 84503520 ChrA Metal Resistance Chromium Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 7.517771262 7.479202169 7.66381512 8.338923395 7.892064939 7.550161314 7.621030855 7.547501267 86357376 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.34102345 8.174727209 8.378216183 7.930549105 8.095394358 8.387180804 7.915214249 8.215893186 8.22981676 8.267934201 8.09052822 7.955041801 238760490 pstB Stress Phosphate limitation Yersinia aldovae ATCC 35236 8.642008521 8.284309126 8.376764779 7.630538231 7.713032337 7.396637511 7.359162064 7.216214031 7.583542025 209499858 fnr Stress Oxygen stress Burkholderia sp. H160 8.820843735 8.806361117 8.816961886 9.125402787 9.047168925 8.699985706 8.643779041 9.310385193 8.992123613 9.160932336 9.108422959 9.247961539 170774454 atzC Organic Remediation Herbicides related compound Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 8.44437684 8.21314807 8.62740024 8.744064611 8.558222188 8.175609103 8.390792363 8.918061614 8.658082546 8.708937691 8.581676568 8.615956878 124516409 obgE Stress Radiation stress Leptospirillum rubarum superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 9.561527678 9.681775372 9.6504762 8.979447 8.773551154 8.924396847 9.360627941 8.93883162 8.675405505 8.8197601 9.003854717 9.054665301 119537612 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.564023251 8.480198544 7.877046474 8.385469598 8.186304337 8.362312527 7.872598666 8.463257236 8.21361978 8.37992219 8.277244205 113730617 pcaG Organic Remediation Aromatics Other aromatics Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 9.355736969 9.285872088 9.238758051 8.647387773 8.924143153 8.56945409 8.665232886 8.96704703 8.687636814 9.014288659 8.630605366 271970099 sigma_24 Stress Sigma factors Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 8.63260497 8.909008557 8.904174326 7.992737362 8.339160307 8.341918381 8.762235582 7.9199269 9.095058338 8.052722833 8.186299849 8.452238585 262273875 pilin virulence pilin Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;species:Grimontia hollisae; 9.628021777 9.4806771 9.811375495 8.93161694 8.574294036 8.864957902 8.84018115 8.667573564 8.536534202 8.880760637 8.797278503 9.067129466 212673480 phn Organic Remediation Herbicides related compound Desulfovibrio piger ATCC 29098 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio piger; 9.423180169 9.590051429 9.414845895 8.91973261 8.56364786 8.706501913 9.002479969 8.727776952 8.768352669 8.789656859 8.92232622 9.105963033 218529024 CopA Metal Resistance Copper Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 8.562598244 8.47814913 8.564617789 8.046309554 8.102516102 8.203519435 8.791148894 8.236073871 8.995910488 8.097032018 8.14402197 8.048963441 19909575 gyrB other category gyrB Caulobacter henricii superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.636515777 8.685699005 8.894593626 8.302653189 8.213210731 8.396750547 8.392921567 8.071881941 8.543724411 8.298954692 8.392509272 8.162927387 88687735 mnp Carbon cycling Carbon degradation Lignin Spongipellis sp. FERM P-18171 7.298850229 7.597882189 7.370111684 7.941538398 7.593978324 7.849965801 7.71172518 260439238 pstC Stress Phosphate limitation Butyrivibrio crossotus DSM 2876 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Butyrivibrio;species:Butyrivibrio crossotus; 8.409089108 8.58443198 8.908422969 8.175854851 7.969972163 8.068769926 7.710281597 7.385177122 7.860962072 7.898766346 8.062792156 149913902 nhh Organic Remediation Aromatics Nitoaromatics Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.563797187 8.676557438 8.54483378 8.186541588 8.455512633 8.831000505 9.235479587 8.731680489 9.215899682 8.64791489 8.811354037 8.742633258 15807237 phoB Stress Phosphate limitation Deinococcus radiodurans R1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 9.491225673 9.673312284 9.570884982 9.089805988 9.096475673 9.86964778 10.00250021 9.634241952 9.883248011 9.258968946 9.626543666 9.828944517 111024868 akbF Organic Remediation Aromatics BTEX and related aromatics Rhodococcus sp. RHA1 8.316969163 8.177331241 8.06958883 7.953950986 8.320786528 8.508460012 8.58430123 8.661320477 8.467287805 8.067737928 7.847668862 8.1272528 22776631 glnR Stress Nitrogen limitation Oceanobacillus iheyensis HTE831 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Oceanobacillus;species:Oceanobacillus iheyensis; 9.606658134 9.301188217 9.596009052 8.574032147 8.629693884 8.558294599 8.444109969 8.234197598 8.468089466 8.339533492 8.428014623 8.756936245 227465059 glnA Stress Nitrogen limitation Gardnerella vaginalis ATCC 14019 8.460190456 8.478282622 8.512118098 7.331516021 7.888640553 7.336877421 7.364479154 7.823189775 90418679 nhh Organic Remediation Aromatics Nitoaromatics Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 8.564881778 8.499426683 9.06838193 8.896410962 8.513549887 9.043288587 9.003048508 8.879466242 8.72589708 8.759822011 8.314614084 260904595 proV Stress Osmotic stress Brevibacterium linens BL2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium linens; 7.619655366 7.857536334 7.999738101 7.730198109 7.74800021 8.117628169 7.848687941 7.910778779 7.793309315 170089369 AceA Carbon cycling Carbon degradation others Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 8.620018026 8.882996739 8.881344423 8.067084959 8.552445647 8.845243799 9.432249364 8.577403049 9.339814725 8.641723462 8.533009686 8.63007189 120406767 nhh Organic Remediation Aromatics Nitoaromatics Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.485283314 8.179568718 7.29771283 7.726834945 7.989626789 7.059421491 8.358542494 7.2930164 7.301870535 7.743701414 148499666 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.599360215 8.796148784 8.746784297 8.084656671 8.087708109 8.303808516 8.551621157 7.593019222 8.328834987 8.052366389 8.17365753 8.325820712 152980366 oxyR Stress Oxygen stress Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 9.284252846 8.744834665 8.753756369 8.530165284 8.464726829 8.693176574 8.475127149 8.432147338 8.503320084 8.682784259 8.718774471 8.753217652 111150230 tfdA Organic Remediation Aromatics Chlorinated aromatics Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 8.941596929 8.781892846 8.261353712 8.961992616 8.976966107 8.488656576 8.781561191 8.824591791 8.623036762 8.808430856 8.575622518 8.461291201 256790534 cap virulence capsule Slackia heliotrinireducens DSM 20476 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Slackia;species:Slackia heliotrinireducens; 9.296498199 9.575495543 9.280864987 8.927567079 9.013355429 9.305632837 9.733890987 9.545754457 9.72074227 9.174971 9.154975965 9.389960526 53803990 ppk Phosphorus Phosphorus utilization Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 9.02908536 8.714525943 9.189250451 8.446365764 8.463789903 8.38441951 8.014543012 8.171995642 8.323988202 8.255796291 8.246242683 8.405022636 242278294 proV Stress Osmotic stress Desulfovibrio salexigens DSM 2638 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio salexigens; 8.386365575 8.268215053 8.441769412 7.936053182 7.686875072 7.848537219 7.768942249 7.91446845 8.192468285 7.819660732 7.693339137 7.726384517 35214191 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 9.38631099 9.440468556 9.19195549 9.30299715 9.282144646 9.016373235 9.515060018 9.58472501 9.233469004 9.360133049 9.061372436 9.037312896 70985992 BADH Organic Remediation Aromatics Other aromatics Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 9.285668337 9.087945618 9.326590552 8.883291626 8.307363582 8.334560151 8.476664981 8.376842222 8.296916951 8.523295616 8.573489759 8.712448826 34497995 narI Stress Oxygen limitation Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 8.046813557 7.992425608 7.612332189 7.686074124 8.138429259 8.186696848 7.703572716 8.13084883 242240773 sigma_70 Stress Sigma factors Dickeya dadantii Ech703 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 9.60617993 9.687204563 9.668266911 9.318712009 9.100028181 9.364440332 9.215008563 9.217581596 9.226578055 9.512744455 9.616164809 9.577385253 206687447 bclA Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 9.523507993 9.283505779 9.40295185 9.41157098 9.30634167 9.046229392 9.608337633 9.552068001 9.530881999 9.636693719 9.697340464 9.425106275 182416208 sigma_24 Stress Sigma factors Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 8.909263803 8.847121122 8.445573388 8.665202013 8.901395769 8.645659087 8.990065087 158422305 NiR Nitrogen Assimilatory N reduction Azorhizobium caulinodans ORS 571 8.249984276 8.712293701 8.682991376 8.091347601 8.604943886 8.609390084 8.853292583 8.874485714 8.647435017 8.988526892 9.104399697 8.830926925 229787174 pstB Stress Phosphate limitation Catonella morbi ATCC 51271 9.311178029 8.941405817 9.065181561 8.453026061 8.425256714 8.220122773 8.105017268 8.455646319 7.975149475 8.182360629 8.607682774 17546751 ureC Nitrogen Ammonification Ralstonia solanacearum GMI1000 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 9.025244859 9.201254968 9.049923937 8.752658158 8.91111108 9.046162413 9.443421067 8.535424168 9.099689662 8.774291619 8.996147429 8.95246137 221738093 nmoA Organic Remediation Aromatics Nitoaromatics Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 8.167391904 8.3406349 8.683724935 8.059828165 7.988787144 7.817744983 7.171428269 6.873655339 7.543148724 7.613324273 7.70333299 160917424 narG Nitrogen Denitrification uncultured bacterium 8.477772091 8.443546134 8.405275324 8.724738657 8.362598261 8.102159785 8.325067815 8.492312188 8.488960124 8.12070213 8.150066662 8.324193319 134101896 exochitinase Carbon cycling Carbon degradation Chitin Saccharopolyspora erythraea NRRL 2338 8.283703482 7.957039606 7.696867863 7.594178834 7.577001433 7.381202792 7.531424807 8.12150779 7.61703207 7.722411464 7.728266882 229858323 katE Stress Oxygen stress Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 9.702484327 9.437479659 9.457975982 9.261418795 9.389999961 9.16033153 9.302717084 9.468155734 9.37285499 9.614721851 9.551609376 9.498201276 151584753 P450 Energy process Energy process Halorubrum lacusprofundi ATCC 49239 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 9.187315499 9.253705919 9.163684416 8.371951551 8.316897959 8.28088372 8.444805359 8.258730481 8.295313163 8.157828173 8.126020968 8.550828182 184195606 HBH Organic Remediation Aromatics BTEX and related aromatics Burkholderia phymatum STM815 8.223691532 8.376882889 8.422186364 7.859103127 7.972098751 7.507934128 7.600659723 7.233947417 7.805048404 7.739694441 7.552834065 217415159 TerC Metal Resistance Tellurium Bifidobacterium angulatum DSM 20098 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium angulatum; 9.091235573 8.777282895 8.957361543 8.787647716 9.166180777 8.970307233 8.653133898 9.304815158 8.721793605 8.993400856 9.016639869 9.236801486 120589639 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 8.929332767 8.616417229 8.696265906 8.828145239 8.646189294 8.695223749 8.788139529 8.879026849 8.657514798 8.88805266 8.962423101 8.698451951 209401594 narG Nitrogen Denitrification uncultured bacterium 8.649413516 8.82057671 8.358427815 8.558236434 8.518793582 8.181015634 8.707550995 8.846214981 8.546540637 8.598267191 8.272294139 8.366880529 91681941 fnr Stress Oxygen stress Rhodopseudomonas palustris BisB5 8.73032437 8.762208903 8.63401327 8.882269797 8.841487703 8.688175593 9.019516723 8.971757124 8.879833298 8.911493082 9.023962194 8.807272842 49650634 katE Stress Oxygen stress Yarrowia lipolytica superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Dipodascaceae;genus:Yarrowia; 9.10478268 8.556645216 8.244181247 9.018301368 8.953912459 8.497816559 9.161457696 9.007198099 8.874821534 8.803020356 8.504644402 8.700604666 56068751 SilA Metal Resistance Silver Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.570960813 8.268310373 8.651432307 7.904040801 7.81093892 7.921908474 7.552412235 7.552729695 8.131413552 7.581369107 7.841971533 7.922604461 78214144 nasA Nitrogen Assimilatory N reduction Synechococcus sp. CC9605 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.964517847 7.979569682 168199056 nagG Organic Remediation Aromatics Aromatic carboxylic acid Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 9.265699192 9.323859543 9.239066709 8.94108947 8.576277498 8.883427949 8.819476635 8.751627847 9.05079269 8.980005531 9.014709552 9.070661685 260519174 katE Stress Oxygen stress Sanguibacter keddieii DSM 10542 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Sanguibacteraceae;genus:Sanguibacter;species:Sanguibacter keddieii; 8.223966769 8.364680705 8.466024897 8.773090359 8.608815538 8.245428786 8.874986433 8.800130237 8.761354472 8.722753208 8.805066329 8.102025743 226944775 glucoamylase Carbon cycling Carbon degradation Starch Azotobacter vinelandii DJ superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 7.927603277 8.061731358 7.992084837 7.703711164 7.899803127 8.075984218 8.12906077 8.217559959 7.866694247 146281382 iro virulence Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 8.93176116 8.41915559 8.565144752 8.770392924 8.505241101 8.299119852 8.589964978 8.557905067 8.597424277 8.441090595 8.518645451 8.313491653 23494061 pheA Organic Remediation Aromatics Other aromatics Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 8.754285325 8.719439251 9.010736771 8.870009381 8.744688108 8.72765713 8.986842082 9.114374296 9.120904161 9.263095952 9.337268343 9.164886116 90327442 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Photobacterium profundum 3TCK superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 8.015366069 8.055891806 7.250178029 6.970586831 6.860579668 6.72535819 6.604625459 7.493261319 94471133 narG Nitrogen Denitrification uncultured bacterium 8.363043023 8.437344878 8.538538826 8.112747607 7.851095086 7.878638744 7.568058189 7.604056799 7.966325388 7.538649149 7.497934604 7.75598572 218279383 CopA Metal Resistance Copper Roseburia intestinalis L1-82 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia intestinalis; 8.508345017 8.732974759 8.678683846 8.655396358 8.812485693 8.597672851 8.335147357 8.879311111 8.460698184 8.794973895 8.802170359 8.722180022 117675823 gyrB other category gyrB Mycetocola lacteus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Mycetocola; 8.656922036 9.076923133 8.363803433 8.817602531 8.883101103 9.180743178 8.792147243 8.519863099 8.597625374 8.998327089 8.852063421 154246264 oxyR Stress Oxygen stress Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 9.232049573 9.133989184 9.232899618 8.672445081 8.50848244 8.611027407 8.768118676 8.563722551 8.670986393 8.840010144 8.850199043 8.747009737 20515236 MATE_antibiotic Antibiotic resistance transporter Thermoanaerobacter tengcongensis MB4 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Thermoanaerobacter;species:Thermoanaerobacter tengcongensis; 8.293932165 8.364460337 8.410561853 8.09514679 8.069820712 7.82577571 7.498307014 7.308616975 7.808138215 7.503002104 7.725677466 8.027131495 213961811 CopA Metal Resistance Copper Capnocytophaga sputigena Capno superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga sputigena; 9.022157047 8.556469828 8.677314154 8.482294878 8.448389884 8.3732344 8.188849814 7.903692332 8.603772914 7.902217408 7.925785174 8.27988618 160365376 PobA Organic Remediation Aromatics Aromatic carboxylic acid Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.141228164 8.14990817 7.995875373 7.9547985 7.592161076 7.556716082 7.33383347 7.725037782 7.801045394 7.806640356 7.443126854 163734694 ureC Nitrogen Ammonification Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 8.362993872 8.275613779 7.685186342 7.53259211 7.759147103 7.80895851 7.602311366 7.239647758 7.622496472 7.605466998 14861216 proO Organic Remediation Aromatics Other aromatics Comamonas testosteroni superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 9.924237648 9.938294773 9.541094617 8.976250753 9.262424928 9.146237374 9.210085967 8.963548342 9.258623589 9.218497714 9.377759864 9.337136156 241362704 iro virulence Acidovorax delafieldii 2AN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax delafieldii; 8.301817159 8.256726463 7.4562843 7.979267299 8.302483467 8.347882379 7.8593098 8.332013251 7.941924049 7.943607189 8.45836572 167769027 CopA Metal Resistance Copper Anaerotruncus colihominis DSM 17241 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Anaerotruncus;species:Anaerotruncus colihominis; 9.331814269 9.179801137 9.286117215 8.757784495 8.710957113 8.669575752 8.597640409 8.939322638 8.653188852 9.004102155 8.850787431 8.955841476 119867782 Catechol Organic Remediation Aromatics Other aromatics Mycobacterium sp. KMS 9.590029367 9.593599399 9.624998492 8.830093481 8.971473712 8.901986595 8.894950333 8.752930199 8.754867122 8.789103271 8.867761386 9.03910943 46409933 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.586072367 8.666982611 8.65324838 7.960726198 8.128222617 7.696984906 7.552213153 7.473006522 7.845194538 7.666214421 7.806635489 119716380 bphF1 Organic Remediation Aromatics Polycyclic aromatics Nocardioides sp. JS614 8.891860951 9.059818554 8.653039551 8.423624608 8.77370602 8.760017925 8.633791098 8.569921313 8.507895002 8.438889704 8.621341742 8.628169159 160898768 iro virulence Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.970717346 8.659269049 8.907786812 8.748017006 8.53540552 8.324378558 8.9330573 8.7815646 8.977577956 8.870508821 8.817602458 8.678601632 116626300 ara Carbon cycling Carbon degradation Hemicellulose Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 7.641325817 7.502370321 7.549560263 8.023333055 7.319355405 7.708717188 7.769629738 7.566369806 225570457 sigma_70 Stress Sigma factors Clostridium hylemonae DSM 15053 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 8.411452672 8.426351185 8.402165847 7.495214405 7.300311043 7.550433782 7.372275843 7.088101847 7.246820902 108524633 mer Metal Resistance Mercury Plasmid QKH54 8.30321662 8.242848926 8.141778108 8.266500059 8.580563836 8.875881838 8.463405913 8.684852437 8.792712044 8.104577162 8.646359835 8.003216815 283780188 sigma_38 Stress Sigma factors Pirellula staleyi DSM 6068 8.313301862 8.315790051 8.402397183 7.639304198 8.021256346 8.098376158 8.319979231 7.748102926 7.883222919 7.904117094 7.905667686 27354437 atzB Organic Remediation Herbicides related compound Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 9.603415172 9.59992809 9.552423366 9.285693819 8.790587869 8.893239952 8.724166685 8.716387992 8.718270346 8.914385285 8.806611977 9.085546532 147829856 Catechol Organic Remediation Aromatics Other aromatics Clavibacter michiganensis subsp. michiganensis NCPPB 382 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 8.699669206 8.564293276 8.857405971 8.710054755 8.707213605 8.507319227 8.434207721 8.87771123 8.570915898 8.746578934 8.773604645 8.644577601 237885049 ahpC Stress Oxygen stress Micromonospora sp. ATCC 39149 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 8.377552726 8.551879361 8.385648768 8.207078874 8.350655614 8.330301999 8.026586282 8.4173957 8.178440149 8.329855426 8.374511111 8.339718548 149911477 nrfA Nitrogen Dissimilatory N reduction Moritella sp. PE36 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Moritellaceae;genus:Moritella; 8.065695604 7.898376613 7.267968347 7.147062658 7.276310605 6.978542411 7.355272217 6.976823313 6.732532682 7.228177261 225046890 pstB Stress Phosphate limitation Clostridium asparagiforme DSM 15981 8.838548392 8.496057782 8.790859026 8.132922528 7.8952523 7.989594603 8.026680662 7.787154229 7.71773647 7.766080027 8.100993047 192360364 CopA Metal Resistance Copper Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 8.630393598 8.606826689 8.474497758 8.450910682 8.639893966 8.490787552 8.60761306 8.508597462 8.337893437 8.210305538 8.460622524 8.072030623 196200626 phoA Stress Phosphate limitation Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.657980706 8.632410442 8.460789065 8.293231511 8.944816344 8.114312123 8.675321657 8.554921361 8.640091079 145217070 linB Organic Remediation Pesticides related compound Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.023677864 7.963701577 7.72647426 7.781225055 7.874667269 7.666438736 8.131493199 8.20918479 7.976422969 7.672573053 7.863070218 254447663 sigma_70 Stress Sigma factors gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.352950789 8.060021644 7.786685728 8.278697061 8.026166411 7.899958238 7.928683461 8.259661494 38232576 ureC Nitrogen Ammonification Yersinia aldovae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia; 8.420094832 8.70741767 8.964317288 8.327374492 8.455664971 8.310807593 8.404598362 8.671688414 8.213577539 8.805268458 8.64083356 8.799498136 241774024 B_lactamase_C Antibiotic resistance Beta-lactamases Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 8.368478348 8.568778794 8.072508536 7.951219493 7.920030203 8.178525987 8.2642116 8.180402903 7.973692088 8.05766925 29607602 TerZ Metal Resistance Tellurium Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 9.253995972 9.010016771 8.665982994 9.267642502 9.635004388 9.355312285 8.85197661 9.696293983 8.609121001 9.471636839 9.252047626 9.734775345 126320482 mauAB Organic Remediation Herbicides related compound Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 9.080266884 9.00057792 9.214096928 9.303277023 9.288469529 8.842649288 9.117622434 9.636162722 8.941775149 9.361578238 9.155211135 9.535814355 167589855 MFS_antibiotic Antibiotic resistance transporter Burkholderia ubonensis Bu superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ubonensis; 8.336682418 8.469292831 8.293136962 8.493273696 8.45205312 8.270038671 8.740382942 8.575442718 8.485217961 8.355419112 8.596685116 8.151281453 149182238 rubisco Carbon cycling Carbon fixation Bacillus sp. SG-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 8.449357651 8.47215943 8.211477087 8.070891959 8.315963031 8.166979796 8.369669925 8.628947492 8.263644621 8.453205678 8.325377004 62421700 nifH Nitrogen Nitrogen fixation Anabaena sp. PCC 9109 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena; 8.582720772 8.152373227 8.274778411 7.728625919 7.659023743 7.690495939 7.612679108 7.362520881 8.052498962 7.793567745 7.935897061 8.100845989 219952592 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 8.744596152 8.31176557 8.631352686 8.400139717 8.676895325 8.279659696 8.267054168 8.269086717 8.157816852 8.324614203 8.236926543 8.075078158 190696549 P450 Energy process Energy process Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.775279119 9.082386211 8.458214957 9.075028468 9.365238328 9.143340104 9.481580251 9.42786418 8.9379179 9.43416857 9.438258152 9.190033405 78057472 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira; 9.115543568 9.267009686 9.058151127 8.685009665 8.66977332 8.467438644 8.324414267 8.499270577 8.445396976 8.291269155 8.359588601 8.734298297 238720878 pap virulence adhesin Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 9.28295528 9.444422076 9.604388184 8.831141388 8.655012703 8.537634282 8.513560822 8.635440943 8.53816601 8.673205725 8.658355934 8.939859242 115368031 alkK Organic Remediation Others Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 8.123165828 8.005712832 7.733839596 7.499588469 7.691977081 7.817103093 8.23127242 8.211826029 8.136672291 7.849475454 8.225356701 158110467 CDH Carbon cycling Carbon degradation Cellulose Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.435651709 8.397806482 7.969000663 7.776645414 7.988251437 7.719708213 8.093036304 8.073357523 8.053162584 7.865585302 8.108904688 29342459 endochitinase Carbon cycling Carbon degradation Chitin Enterococcus faecalis V583 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus faecalis; 7.01055595 7.285028369 7.140215871 6.59248109 6.830147928 7.519635042 74038344 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.780759739 9.093979173 8.98491954 8.617945023 8.722054591 8.764342439 9.00418167 9.246460648 9.166405807 9.005477682 8.990726604 8.893804634 117613120 ArsC Metal Resistance Arsenic Shewanella sp. ANA-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 10.01932312 9.853716309 10.19059688 9.89113253 9.861144251 9.550398006 9.654544542 10.13343139 9.794721624 9.996257959 9.833195494 10.19501114 90590062 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 8.296524738 8.364606404 8.007707945 8.083118384 8.089740393 7.954446658 8.740787553 8.068235748 8.414645254 8.267633417 8.169901644 190996270 cytochrome Energy process Energy process Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.748187321 8.719483396 8.867504784 8.275461845 8.425550007 8.322946016 8.043296203 8.304709172 8.061840682 8.046294472 7.814714123 8.341140281 145590693 pstB Stress Phosphate limitation Pyrobaculum arsenaticum DSM 13514 8.79515382 8.758733703 8.699570929 8.078025489 7.958497283 8.01906257 7.674634549 7.790076541 8.223382882 7.857520558 7.712250389 8.059077985 27378440 alkK Organic Remediation Others Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.426339712 8.533024487 8.794866588 7.979340591 7.770417053 7.810137525 8.017381385 7.786457487 8.060735061 7.658564359 7.581583705 8.047140017 151563605 nbaC Organic Remediation Aromatics Nitoaromatics Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 8.281597122 8.050112836 8.330564437 7.559167134 7.568426841 7.728769399 8.239679793 7.823009181 8.636209695 7.823926187 7.844896177 7.744062383 160917486 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.12205291 8.51786002 7.716585053 7.758685594 7.930626483 8.280927561 7.638795251 8.534135092 7.433180076 7.295473133 7.865331354 37726807 dsrA Sulphur sulfite reductase uncultured prokaryote 9.083736395 8.418231066 8.263960641 7.607272002 8.39685357 8.588356518 8.009290071 8.463182811 8.005123079 7.725441727 8.215778021 161390987 PobA Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter litoralis Och 149 9.089602172 8.482201741 9.069303071 8.647133223 8.609277341 8.387494232 8.478206085 8.577958964 8.445794549 8.517785824 8.436363331 8.397224614 179347374 chnB Organic Remediation Other Hydrocarbons Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 10.27721714 10.21814396 10.22646272 9.983293476 9.921638561 9.774179818 9.728022602 10.03099963 9.487112048 9.901064993 10.07846771 10.01931664 116671894 ppx Phosphorus Phosphorus utilization Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8.192852137 8.272495941 8.080589153 7.211187559 7.607913916 7.970310138 8.109916497 7.780704324 8.311717608 7.644976273 7.723435697 7.890449018 113934988 xylanase Carbon cycling Carbon degradation Hemicellulose Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 9.195302348 9.613765089 9.282343766 8.595350703 8.978738833 9.311099288 9.678218328 9.047219053 9.917856629 8.789878219 8.623757092 9.00188364 124495519 AceA Carbon cycling Carbon degradation others Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 8.957430536 8.152207783 8.395535831 9.077381129 8.861707607 8.592791515 8.982496374 8.876784769 8.492670299 8.674012712 8.545878244 189218911 MFS_antibiotic Antibiotic resistance transporter Methylacidiphilum infernorum V4 superkingdom:Bacteria;phylum:Verrucomicrobia;order:Methylacidiphilales;family:Methylacidiphilaceae;genus:Methylacidiphilum;species:Methylacidiphilum infernorum; 8.527626101 8.591093412 8.788302084 8.184990327 8.035847199 8.205299614 8.096462031 7.849233796 8.329080278 7.950165405 8.130469792 8.213342267 85069242 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.175840525 8.159689334 8.179460061 7.760992846 7.646794122 7.683457267 7.950488492 7.858347794 7.978833871 7.745740254 7.756754328 7.78770811 170704115 sigma_70 Stress Sigma factors Burkholderia ambifaria IOP40-10 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 9.072793405 8.956415992 8.861079976 8.959043813 8.736095056 8.973112084 9.314521187 8.945366476 9.260737713 8.818535629 8.634200264 8.75515703 253701641 cytochrome Energy process Energy process Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 9.321252617 9.501798843 9.437590329 9.089035421 9.546151119 9.820535452 9.831540781 9.77787595 9.792682193 9.971104705 9.912939056 9.727199876 54025491 catB Organic Remediation Aromatics BTEX and related aromatics Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 8.790653114 8.614763889 8.197869676 8.258070543 8.311658648 8.846157367 7.73934083 8.772769212 8.042739257 8.052033443 261252156 pstB Stress Phosphate limitation Vibrio orientalis CIP 102891 8.424782167 8.712943907 8.693724618 7.817423527 7.836326746 7.701198565 7.599023429 7.307297668 7.534592109 7.491959757 7.897795285 8.068941242 63257262 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 8.172264081 8.151691791 8.547054109 7.712455025 8.005474905 8.368351594 8.783279052 8.273045299 8.956974378 8.045565366 8.358566855 8.612904565 219563158 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 9.405837985 8.501844722 8.263928784 8.855678434 8.417913007 8.371449533 8.663700806 8.500990748 8.679395213 8.309849186 8.525569834 8.043844264 13242054 phtA Organic Remediation Aromatics Aromatic carboxylic acid Arthrobacter keyseri superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 9.860833527 9.721015337 9.824254224 9.697729741 9.756717376 9.819853168 10.19634244 9.739626126 9.892518455 9.772328996 10.05391787 10.15681474 88806192 Arylest Organic Remediation Aromatics Other aromatics Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 9.793038548 9.667561034 9.807768941 9.141155095 8.928033781 9.037214875 8.895451559 8.734382636 8.675175174 8.673127204 9.080631623 255265905 sigma_24 Stress Sigma factors Bryantella formatexigens DSM 14469 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;species:Bryantella formatexigens; 8.53507586 8.812701341 8.673786504 8.139528104 8.20015294 8.00545983 7.939648044 7.91458786 8.224158596 7.769171258 7.926239339 7.993719432 193225844 phn Organic Remediation Herbicides related compound Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 8.208121836 8.651690489 7.709010174 8.555686008 8.504345578 8.642567259 8.207157371 8.676232645 8.231278656 8.14577534 8.191805213 256379515 fnr Stress Oxygen stress Actinosynnema mirum DSM 43827 9.766345183 9.727550209 9.753037193 9.019490352 8.194781747 8.968309304 9.183570699 8.935574647 8.996996139 9.05435253 9.218559358 9.219563 55794120 B_lactamase_A Antibiotic resistance Beta-lactamases Carnobacterium divergens superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Carnobacteriaceae;genus:Carnobacterium; 8.247536849 8.488382323 7.864287785 7.454978297 7.205187361 7.45910389 7.372752193 7.842493247 7.152816663 7.368164994 7.643895369 161524486 atzB Organic Remediation Herbicides related compound Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 8.22261088 8.007952692 8.034502046 8.170330287 7.94685438 7.934169006 8.627012888 8.19625811 8.305819466 8.202689988 8.088912577 108760026 sigma_24 Stress Sigma factors Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 9.485398742 9.403015313 9.505147789 8.790099455 8.748678885 8.642729166 8.534045342 8.300577669 8.606658902 8.567973398 8.670545858 9.016833275 225181480 pstB Stress Phosphate limitation Dethiobacter alkaliphilus AHT 1 8.109989185 7.816234154 8.117776988 7.322038712 7.106324379 6.738316666 7.936944183 7.087427317 7.192617536 116750313 pstA Stress Phosphate limitation Syntrophobacter fumaroxidans MPOB 8.868020141 9.154660379 8.980008593 8.898224961 9.039730752 9.005143233 9.11419233 9.011045989 9.206266441 9.109323999 9.397303115 9.052792462 119505476 linB Organic Remediation Pesticides related compound marine gamma proteobacterium HTCC2080 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.735821544 8.879339154 8.231220842 8.658839579 8.711697246 8.829535115 9.016174406 8.600479197 8.789750865 8.380979291 8.417476068 8.359483316 108761289 clpC Stress Protein stress Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 9.395705713 9.449060087 9.130292425 9.018929544 8.764426086 9.229628621 9.599039646 9.129069058 9.384936654 9.292896528 9.566718012 9.167479621 85059283 type_III_secretion virulence secretion Sodalis glossinidius str. 'morsitans' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Sodalis;species:Sodalis glossinidius; 8.844587749 8.759550625 8.822867633 8.143048381 8.265633636 8.460671935 8.197547698 7.873913593 8.375556406 8.717978836 8.45673424 8.707026149 222452026 nitA Organic Remediation Aromatics Other aromatics Halorubrum lacusprofundi ATCC 49239 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 9.393372694 9.46213232 9.324605684 8.889982055 8.728311631 8.69653833 9.012735599 8.791229983 8.816120523 8.879563052 8.870862082 8.936689289 58613942 mdlB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.211804011 8.150970969 7.909827902 7.548024616 7.409582606 7.471556224 8.02504519 7.24807914 8.250432183 7.473959283 7.168386166 7.81544879 118586481 glnR Stress Nitrogen limitation Oenococcus oeni ATCC BAA-1163 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Oenococcus;species:Oenococcus oeni; 7.447387184 7.072340634 7.396155553 6.768595101 6.744053991 7.363062692 7.087931549 7.373563661 7.31642033 213926291 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas syringae pv. tomato T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 8.919966325 9.009418084 8.310358323 8.767401109 9.137472482 9.238035489 9.110581263 9.126412091 9.081072256 9.40865763 9.136964086 146303037 ABC_transporter_I Bioleaching other category Metallosphaera sedula DSM 5348 8.992948243 8.739920485 9.000573167 8.381010114 8.257404233 8.211841225 8.065723614 8.18264481 8.425140415 8.173192201 7.974542435 8.480816367 119505202 pimF Organic Remediation Aromatics Aromatic carboxylic acid marine gamma proteobacterium HTCC2080 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 9.913183782 9.958462618 9.355326932 9.280104429 9.333789838 9.524167356 9.381785229 9.493742595 9.472229346 9.494787006 9.626565191 50592000 BchY other category chlorophyllide reductase Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.983433754 8.907111749 8.881373074 8.6345641 8.245132332 7.776260889 8.409912602 8.004136344 8.79495464 8.105073837 8.455281696 7.859613796 254486235 xylA Carbon cycling Carbon degradation Hemicellulose Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 9.29976342 9.161773162 9.310269965 8.753908401 8.664428199 8.61767454 8.528079002 8.521169027 8.591965856 8.537843652 8.565295815 8.8365675 189348437 pstS Stress Phosphate limitation Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 8.818866135 8.600008408 8.45148948 8.118153457 7.973137677 7.824147381 7.906959553 7.722819256 7.962461633 7.51695741 7.993675828 226092209 hly virulence hemolysin Gemmatimonas aurantiaca T-27 superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 8.486407578 8.221701079 8.211281555 8.290225364 8.323950896 8.277729109 8.592696054 8.550989841 8.619288333 8.42804625 8.38268169 34333269 terminase_large_subunit Bacteria phage REPLICATION Bacteriophage KVP40 order:Caudovirales;family:Myoviridae;genus:T4-like viruses;species:Vibrio phage nt-1 sensu lato; 9.3101103 9.244237848 9.284843123 9.318569789 9.265530805 9.319046971 9.027647829 9.639848844 9.105719172 9.391983131 9.669015861 9.306961352 258404985 sigma_32 Stress Sigma factors Desulfohalobium retbaense DSM 5692 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium;species:Desulfohalobium retbaense; 8.667922286 8.763461458 9.074523327 8.300061324 8.421230899 8.299151201 8.300785868 8.555639046 8.392959609 8.658348151 8.467692529 8.576357132 261284230 ara Carbon cycling Carbon degradation Hemicellulose Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 9.00641355 9.076687616 9.045848028 8.476428755 8.271610889 8.138507338 8.114159216 8.573551581 254270048 ureC Nitrogen Ammonification Methylobacterium extorquens DM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 8.332104026 8.483020097 8.625388542 8.464345724 8.345632749 8.139255901 8.360790995 8.296927937 8.523221423 8.364712553 8.286423029 8.151410726 197713998 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 8.458065111 8.567851467 8.271234681 7.764069271 7.525393132 8.001980401 8.12765252 7.679872008 8.290873355 7.967940805 7.74831281 7.951300752 126348275 nagG Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces ambofaciens ATCC 23877 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ambofaciens; 9.698746353 9.693745162 8.719931409 8.979094545 8.672051529 9.207449373 9.532851668 9.423564509 9.662674215 8.858207752 166366994 mer Metal Resistance Mercury Microcystis aeruginosa NIES-843 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 9.023566553 8.875587857 9.198880304 8.290611963 8.30396359 8.37947675 8.103187306 8.078351942 7.980062467 7.713811958 8.436422403 113945200 TerC Metal Resistance Tellurium Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 8.526625481 8.296650078 8.520983619 8.562543428 8.686350076 8.46629035 8.397718168 9.028204774 8.667286992 8.71879725 8.817131056 8.170842089 154162660 trzE Organic Remediation Herbicides related compound Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.668974311 8.896746178 8.795516306 8.730192979 8.621122557 8.367894589 8.633730022 8.610267069 8.85432179 8.668012006 8.867457293 8.515532727 134265839 narH Stress Oxygen limitation Geobacillus thermodenitrificans NG80-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermodenitrificans; 8.663437123 8.480788485 7.616874024 7.660446848 7.463961278 7.896763613 7.759591239 7.947570713 7.695510879 7.620420001 7.640074163 118471613 fnr Stress Oxygen stress Mycobacterium smegmatis str. MC2 155 8.887579709 8.850366496 8.427515291 8.516997697 8.151472409 8.6074853 8.46641088 8.362238592 8.509403774 8.283400672 8.39939001 8.23632507 46578391 phenol_oxidase Carbon cycling Carbon degradation Lignin Trametes hirsuta superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 9.000139621 8.943441708 9.509747608 9.692432235 9.865783611 9.702137616 9.037777019 9.719530989 8.893509147 9.535242149 9.517133756 10.0230286 270512534 SMR_antibiotics Antibiotic resistance transporter Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 8.976794136 8.858098437 9.347474091 8.890605931 8.934787022 8.524357725 8.711002233 9.184429927 8.976331543 9.367606988 9.140646688 9.200089675 161394922 pstB Stress Phosphate limitation Roseobacter litoralis Och 149 8.41366183 8.527643093 8.267453826 8.417922256 8.156582504 8.202767942 8.262395062 8.214707404 8.049878926 8.01453878 7.623591581 153010531 CadA Metal Resistance Cadmium Ochrobactrum anthropi ATCC 49188 9.56545728 9.066017836 8.270961013 8.21727535 8.244323942 8.573310973 8.236181448 8.906565888 8.43495555 8.461485583 8.772231745 73534331 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.851727289 8.859174132 8.484895147 8.300451922 8.381350697 8.112878373 7.981333769 8.289705762 8.269095353 8.670284302 8.321072043 123441628 cellobiase Carbon cycling Carbon degradation Cellulose Yersinia enterocolitica subsp. enterocolitica 8081 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 8.226155649 8.1940848 8.156120129 7.865218988 7.548533722 7.62821957 7.660934471 7.45033361 7.838328374 7.309630757 7.179673787 7.44308494 247543099 katE Stress Oxygen stress Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 8.648496526 8.375490301 8.643124454 7.723716133 7.824623841 7.931809367 8.166595184 7.53606549 8.115472364 7.930942608 7.68100936 8.063342997 187978628 pheA Organic Remediation Aromatics Other aromatics Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 8.104075367 8.257129636 8.547622402 7.820624481 7.810903347 7.670457507 7.721566916 7.271719251 7.644468822 7.733839943 7.91270012 83316950 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.079160217 9.072973779 9.189465261 8.60930193 8.624063216 8.251370826 8.460150965 8.760474886 8.791666731 8.943950127 9.006758516 9.041073713 260418105 phoB Stress Phosphate limitation Silicibacter lacuscaerulensis ITI-1157 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria lacuscaerulensis; 8.814881586 8.912632213 8.888238615 8.579224115 8.172376238 8.298163932 8.282084365 8.150660571 8.346631406 8.143658705 8.281810012 8.504067738 146339315 fnr Stress Oxygen stress Bradyrhizobium sp. ORS278 7.972520304 8.163030343 7.838529833 8.025818155 8.003414429 7.793067626 8.393619425 8.057705642 8.121865106 7.865576763 8.122164211 126667582 ArsC Metal Resistance Arsenic Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 8.399693973 8.619819393 8.752485802 7.428151937 7.641830179 8.005542674 8.430119514 8.018976878 8.363700683 8.102284931 8.282282968 7.971455254 260221066 fnr Stress Oxygen stress Curvibacter putative symbiont of Hydra magnipapillata 8.31310339 8.338302465 8.501641161 8.69037076 8.466530258 7.971698973 8.337331241 8.486092684 8.303956552 8.449180534 8.474847559 7.875466161 88062471 dsrA Sulphur sulfite reductase uncultured Desulfobulbaceae bacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae; 8.954390897 9.011019283 9.096320192 8.451863895 8.354409213 8.293216339 8.231774855 8.186600772 8.358451308 8.272433754 8.176646236 8.540854372 4827073 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. NCIMB12038 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.897868307 8.829389888 8.879003198 8.149930087 8.080406601 8.186923615 8.369389558 7.963247738 8.286915572 7.902327555 7.938194201 8.324476543 254465385 oxyR Stress Oxygen stress Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.436054234 8.48858379 8.658726965 8.519325667 8.624105595 8.314433686 8.374235484 8.765551708 8.828286741 8.638891847 8.565812095 8.449138477 45386221 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 8.57630376 8.842876836 8.483778378 8.130543448 8.324009342 8.697167344 8.999455972 8.663562992 8.660110388 8.673523713 8.861564119 9.007554268 170122476 exaA Organic Remediation Chlorinated solvents Escherichia albertii TW07627 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 8.541584864 8.557255591 8.415825114 7.841561428 7.774134689 7.951123221 7.839465235 7.412372998 7.651889663 7.576899214 8.050824472 257056812 AceA Carbon cycling Carbon degradation others Saccharomonospora viridis DSM 43017 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora viridis; 8.296101317 8.68078879 8.371272189 7.636766953 7.545867673 8.237094682 8.443851505 7.647215259 8.280938796 7.635560696 7.862112436 7.950558386 116633904 narG Nitrogen Denitrification uncultured bacterium 9.218139265 9.132471147 9.27014884 8.520853105 8.399429668 8.550651325 8.432840941 8.463306491 8.69889189 8.370209329 8.528423482 8.545732077 260218502 sigma_70 Stress Sigma factors Cronobacter turicensis z3032 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter turicensis; 8.690237217 8.468881639 8.380583233 8.223200573 8.509086337 8.37334063 8.205452976 8.116749636 8.461331375 8.198841725 8.608689447 8.34045983 75187254 ppx Phosphorus Phosphorus utilization Escherichia coli E24377A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 8.517653312 8.975036877 8.014432584 8.167399451 7.690976951 7.271393656 7.910084544 7.772889974 7.731347895 7.542364784 256634608 pstB Stress Phosphate limitation Acetobacter pasteurianus IFO 3283-01 8.267568881 8.075432913 7.897008964 7.79238625 7.838266207 7.328627138 7.897039394 7.759262104 7.624212455 7.715266895 7.547813623 154496549 ArsC Metal Resistance Arsenic Bacteroides capillosus ATCC 29799 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides capillosus; 8.796772957 8.348719933 7.283406096 7.368247992 7.703006461 7.890050127 7.258081004 7.420938718 7.608466281 7.767639715 2822266 cumA Organic Remediation Aromatics Other aromatics Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.529312404 8.447596267 8.731541463 8.123376983 7.894993896 7.854908324 7.37847856 7.29859741 8.089220326 7.997342866 7.877755896 8.093168669 163858334 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 8.917191598 9.265696841 8.988978224 9.085777389 9.355703284 9.32492282 9.429980539 9.665532484 9.254045527 9.762158593 9.614984387 9.574837091 120596402 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8.409950802 8.308865555 8.490384093 7.784225827 7.821161245 8.031958737 7.434291282 7.259336291 7.741846135 7.700424989 7.853748748 121597394 bphA Organic Remediation Aromatics Polycyclic aromatics Burkholderia mallei SAVP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia mallei; 10.05772811 9.997200892 10.50220297 10.34623342 10.32646343 10.12154823 10.14926786 10.49949909 10.21132414 10.39318884 10.17184528 10.23959985 32895106 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 10.17776402 9.899793474 9.982979386 8.96859803 8.911911533 8.807125804 9.467101457 9.065015872 9.61434646 9.703535014 9.669995118 9.580488779 188581810 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 9.054346218 9.002467839 9.015048299 8.626154974 8.666660791 8.600114451 8.541185785 8.633861231 8.503478393 8.79393912 8.628793299 8.694187262 86158084 cytochrome Energy process Energy process Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 8.944438747 8.813636082 8.442782989 8.410595419 8.467398379 8.474728583 8.503381555 8.558471924 8.640964735 8.621766058 8.593123191 8.454986754 190010206 linB Organic Remediation Pesticides related compound Stenotrophomonas maltophilia K279a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 8.172821328 8.813113544 8.555624463 8.229516841 8.480602351 9.22836092 9.294747152 9.15861499 9.084151241 9.32983823 9.103426946 9.49729781 115511388 alkB Organic Remediation Other Hydrocarbons Mycobacterium sp. TY-6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.349901346 8.325600877 8.173289164 7.950941684 7.796277773 7.830477868 7.678297949 7.790647301 8.494022575 8.287900245 8.285354546 8.270865125 133915046 gdh Nitrogen Ammonification Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 8.580410958 8.504893257 8.497241053 8.577679963 8.481098037 8.212855852 8.409556654 9.009551017 8.597962996 8.982039029 8.698703167 9.054750984 256666796 SMR_antibiotics Antibiotic resistance transporter Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 9.308833957 9.738574755 9.412237063 9.435242178 9.752007516 9.748978952 9.966597888 10.16202774 9.814182314 10.29787026 10.08582649 9.902914523 218762225 mer Metal Resistance Mercury Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 8.558174608 8.736388522 8.562712081 8.311711016 8.104050599 8.102934678 8.109639617 8.15717865 8.468728224 7.986026081 8.148954554 8.404565423 73763028 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.328715983 8.039623903 8.112931568 8.149795868 7.712673013 8.037101548 8.373341176 7.954094487 8.06781636 7.584123219 7.531690022 7.640099321 162283252 nitA Organic Remediation Aromatics Other aromatics Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 7.992212546 8.025699072 7.259672581 7.201980219 7.530013572 7.450250515 7.104605472 7.652019841 7.389160788 7.672347301 258515972 ahpC Stress Oxygen stress Desulfotomaculum acetoxidans DSM 771 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum acetoxidans; 8.366515841 8.487811768 8.56761861 8.156098381 8.288806538 8.188939852 7.979900583 8.151158649 8.217013621 8.226054152 8.250243773 7.97618292 112462259 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.486277321 8.237036155 7.647300219 8.01497737 8.206158501 8.580041173 7.699889526 8.557994129 7.904242742 8.253820692 7.989950334 254562908 fnr Stress Oxygen stress Methylobacterium extorquens DM4 8.658218857 8.46026445 8.192727779 9.165161067 9.054772824 8.930506906 8.699384222 8.922804351 8.574118318 8.906625038 8.732242509 8.416306028 15625040 sox Sulphur Sulphur oxidation Rhodovulum sulfidophilum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodovulum; 8.750153239 8.757719608 8.507830572 7.995109726 8.128806077 8.105571073 8.248652661 7.683433094 8.278662269 7.872669832 7.746058721 8.037817467 148501358 vanA Carbon cycling Carbon degradation Others Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.716460724 8.70367912 8.899581197 8.464309876 8.406625037 8.445685807 8.037911784 8.483113635 8.351474629 8.439345734 8.409143538 8.211369642 89344536 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 8.334495352 8.496754541 8.049210451 7.357992947 8.052978763 8.108550362 7.832699056 8.0886165 8.028180841 8.057447058 7.852571443 256559636 glnA Stress Nitrogen limitation Brachybacterium faecium DSM 4810 9.242800216 9.086719231 8.953934746 8.691065229 8.735489093 8.763228777 8.74178058 8.888216965 8.740221768 8.873002766 8.836307686 8.96378797 209964768 glnA Stress Nitrogen limitation Rhodospirillum centenum SW 8.68470334 8.835866295 9.351182017 8.530872234 8.24119959 8.61764714 8.672944629 8.483582667 9.037255497 8.55676526 8.595253635 8.630735015 160899852 nmoA Organic Remediation Aromatics Nitoaromatics Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.040580432 8.302904539 7.903105682 8.148849267 8.068289371 8.084161748 8.524831575 8.423130291 8.758473209 8.676540956 8.433863299 145282502 AceB Carbon cycling Carbon degradation others Pyrobaculum arsenaticum DSM 13514 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum arsenaticum; 8.618385313 8.453806451 8.523302569 8.013912171 8.001286646 7.99181602 7.792107748 7.868967512 8.15720407 7.989053226 7.787025461 8.236345558 158522608 nifH Nitrogen Nitrogen fixation Candidatus Desulfococcus oleovorans Hxd3 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus;species:Desulfococcus oleovorans; 9.302578915 9.080406937 9.136071281 8.756037795 8.586188966 8.460140928 8.402585036 8.721228667 8.61214451 8.893404384 8.41092203 8.71179301 170748992 fnr Stress Oxygen stress Methylobacterium radiotolerans JCM 2831 9.969593605 9.87432388 9.898949745 9.396641507 9.366089884 9.276135925 9.13427714 9.177460552 9.408240923 9.095778998 9.260495006 9.343051018 259164694 glnA Stress Nitrogen limitation Corynebacterium efficiens YS-314 8.819823334 8.777324558 9.145190417 8.106361824 7.947063704 7.998321377 8.043522465 7.855886335 8.059117449 7.860902371 7.698461448 8.235119602 167661174 mer Metal Resistance Mercury Clostridium scindens ATCC 35704 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium scindens; 9.337524697 9.037376624 9.123445721 9.278023647 8.983738745 8.622524519 9.117211166 9.168228174 9.244926441 9.389760369 8.648196027 160363777 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.17444661 8.269915131 7.842396278 7.943678875 7.800408785 7.740516289 7.841078345 8.196931935 8.297836616 8.235160843 8.283184438 224394570 NiR Nitrogen Assimilatory N reduction Labrenzia alexandrii DFL-11 7.93665635 7.809113238 7.105875279 6.92765284 7.060515523 7.097334026 6.71016849 7.641134723 7.055021993 6.962688917 209906957 Arylest Organic Remediation Aromatics Other aromatics Enterobacter cancerogenus ATCC 35316 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 8.31433236 8.399307445 8.898060479 7.377515691 7.623353614 7.73093915 7.557612362 6.818854141 8.251838392 7.17280392 7.275292287 7.765479361 241776393 hrcA Stress Heat shock Allochromatium vinosum DSM 180 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 7.76091861 7.591875736 7.654817739 7.684260387 7.823522699 7.884488834 7.657210203 7.549982498 198039164 nagK Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia cenocepacia J2315 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 8.635772712 8.506188818 8.317010292 8.299815349 8.140354538 8.110562254 8.467687107 8.341475372 8.311268189 8.48039459 8.237318236 158108669 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.513818373 8.4488414 8.340477062 8.289327458 8.261020084 8.329057865 8.441833976 8.470594066 8.508994325 8.015428367 8.206498475 8.10364463 83756477 sigma_70 Stress Sigma factors Salinibacter ruber DSM 13855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 9.709043897 10.07013369 9.526108065 9.471159009 9.565981169 9.88911063 10.14960176 9.914982251 9.856430152 10.139429 118151920 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium superkingdom:Bacteria; 9.094095431 9.031734034 9.175908946 8.108525387 8.13924409 8.29649987 9.045015 8.245358317 8.602543768 8.469789661 8.37263318 8.360084024 87119397 linB Organic Remediation Pesticides related compound Marinomonas sp. MED121 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 8.847877477 8.634389679 8.929612537 8.239627711 7.997052252 8.265179049 7.940789747 7.7982298 7.831362531 7.605829134 8.201331426 170769194 dmsA Organic Remediation Others Escherichia albertii TW07627 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 8.345879993 8.500383573 8.234643847 7.847764276 7.906993974 7.244228773 7.191828344 7.832941443 7.638644158 126722028 pcaG Organic Remediation Aromatics Other aromatics Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.19982776 8.656363273 8.779640477 7.906029207 7.855340663 8.066649463 7.870569819 7.469263229 8.29903969 7.600502486 7.716660258 8.057143049 89902441 oxyR Stress Oxygen stress Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 8.234685571 8.008278716 8.145936174 8.096389189 7.917099225 7.44646354 8.160204423 7.795291386 7.748935288 7.537646105 7.825588035 30180438 mer Metal Resistance Mercury Nitrosomonas europaea ATCC 19718 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas europaea; 8.740966763 8.712799447 8.242803724 8.846545219 8.886404274 8.771610279 8.80352127 9.230376852 8.641607863 9.089432665 8.977856332 8.985307916 56809519 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.252175295 8.141276663 8.108090504 7.425102894 7.302345859 7.338958164 6.988993277 7.065602504 7.599095558 7.242915135 7.192865485 7.514317695 73541211 ChrA Metal Resistance Chromium Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.883832918 9.104729921 9.148451666 8.881596894 8.791601215 8.920815618 9.279051811 8.745015991 9.469026668 8.425061894 8.34264781 8.368250914 145047387 fnr Stress Oxygen stress Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 8.424782167 8.282601983 8.371195816 7.813637349 7.77594621 7.592183337 7.406771524 7.45833938 7.942996104 7.665502049 7.556875336 7.838022871 106892842 CopA Metal Resistance Copper Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 9.698717278 8.995054227 8.977299343 9.43613012 9.381312809 9.135509964 9.690294646 9.471938533 9.288833127 9.309212659 9.443195357 9.324893003 10956993 nagG Organic Remediation Aromatics Aromatic carboxylic acid Novosphingobium aromaticivorans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 8.497678046 8.282508016 7.993285571 8.426500634 8.464783849 8.228880384 8.241047173 8.511663942 8.301324864 8.448989227 8.377140958 8.102655396 255008008 ahpF Stress Oxygen stress Bacteroides fragilis 3_1_12 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 8.310864084 8.089541794 8.427587481 8.286854995 8.049770414 7.776716806 7.82516746 8.266025537 8.251365618 7.926659421 7.856553044 8.104613381 190890619 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.5282432 8.494946131 8.695465552 8.02586733 7.981934206 8.283992608 8.632962961 7.911283738 8.690800865 8.08650132 8.071605044 8.194644249 172072470 amyA Carbon cycling Carbon degradation Starch Micrococcus luteus NCTC 2665 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus;species:Micrococcus luteus; 8.099134347 8.300920259 8.483189326 8.428110912 8.275644459 8.516997263 8.558824892 8.31258888 8.471145474 8.54481379 8.38908853 103422968 obgE Stress Radiation stress Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus delbrueckii; 8.483790471 8.484522125 8.650912842 8.527747266 8.385574893 8.30515302 8.1049209 8.501015347 8.060696771 8.45033274 8.532641634 8.424465009 212715535 glnA Stress Nitrogen limitation Bifidobacterium catenulatum DSM 16992 8.709482205 8.844085969 9.023829701 7.779432619 8.179748263 8.530920597 8.877580817 7.924814614 8.344003339 8.252696487 8.435495643 83846976 sigma_70 Stress Sigma factors Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 8.94529334 8.835414192 8.826392003 8.439679194 8.432030566 8.273496894 8.435159049 8.313220152 8.245827051 8.441399099 8.321409294 8.513408488 149390246 cda Carbon cycling Carbon degradation Starch Geobacillus stearothermophilus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 9.102152709 8.834636095 9.128303479 8.606051643 8.594297391 8.392343554 8.515742162 8.578539876 8.646210633 8.609406822 8.609798964 8.716048733 218291098 gyrB other category gyrB Alicyclobacillus acidocaldarius LAA1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 10.01284512 9.910662783 10.01281178 9.292788341 8.955791383 9.285567072 9.256453609 8.954148545 8.95490247 9.170826166 9.177143936 9.463598902 229854983 endochitinase Carbon cycling Carbon degradation Chitin Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 8.441826055 8.769149526 8.660937172 8.831732556 8.705687704 8.373358033 8.615655711 9.032313183 9.040426638 8.7305261 8.571346116 8.678922786 172056109 ctsR Stress Protein stress Exiguobacterium sibiricum 255-15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 7.668186777 7.325501804 7.268967527 6.854710824 7.445313051 7.313744747 86165537 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Marinomonas sp. MED121 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 9.519783493 9.530960484 9.696356585 8.773335569 8.829655942 8.85170907 8.426643815 8.480178351 8.723480486 8.706817651 8.986645999 147886895 obgE Stress Radiation stress candidate division TM7 genomosp. GTL1 superkingdom:Bacteria; 7.357940204 7.707963556 7.70697109 7.730523408 8.18705017 7.286413369 7.266081758 7.808291939 52080336 SMR_antibiotics Antibiotic resistance transporter Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 9.39557779 9.528095331 9.461136167 9.194006692 9.268001532 9.271550179 9.551309684 9.396345798 9.452705928 9.65369276 9.782782583 9.564893266 77689349 CODH Carbon cycling Carbon fixation Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.09552672 9.017050197 9.118181373 8.7514211 8.784213818 8.59527446 8.727718467 8.670173291 8.589544816 8.590480433 8.653990941 8.912627231 119539016 pcc Carbon cycling Carbon fixation Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.591152085 8.597455112 8.324698068 8.211174675 8.081494376 7.841007956 7.94023032 8.343893883 8.51454346 8.266425755 8.014803608 8.345804726 145570146 hydrogenase Energy process Energy process Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 8.284899406 8.586779245 8.641384604 8.128946607 8.338471725 8.457835462 8.730416014 8.257595224 8.311692626 8.205812072 8.63890479 154685214 xylC Organic Remediation Aromatics BTEX and related aromatics Bacillus amyloliquefaciens FZB42 8.39441425 8.428221431 7.424198505 7.715247231 8.453241456 8.020698915 7.554020776 7.597602244 7.619134266 85687921 linC Organic Remediation Pesticides related compound Erythrobacter sp. NAP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 8.841441338 8.673429944 8.913902703 8.323096339 8.263842243 8.196953831 7.908560839 7.449756612 8.200183252 7.933918868 7.72669836 8.230753379 268315594 mannanase Carbon cycling Carbon degradation Hemicellulose Rhodothermus marinus DSM 4252 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 9.300106312 9.159399563 9.307947551 8.764215659 8.651263801 8.637694859 8.526962651 8.357873118 8.643953944 8.590017482 8.416366606 8.809463371 6939871 gyrB other category gyrB Bergeyella zoohelcum superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Bergeyella; 8.879495115 8.654232877 8.780211381 8.114216103 8.220133231 7.950388581 7.688207399 7.388549991 7.902165661 7.783790069 8.092650066 8.269849733 62120271 alkB Organic Remediation Other Hydrocarbons Mycobacterium ratisbonense superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.669496514 8.871348426 8.646065804 8.182046878 8.369304549 9.072802884 9.340868479 8.920958012 8.716381851 9.044137561 8.961681464 9.039862156 169243413 nahA Organic Remediation Aromatics Polycyclic aromatics Mycobacterium abscessus 8.236516692 8.036984362 8.323790937 7.458251189 7.404868815 7.672757271 7.838326338 7.214102948 7.967092214 7.228626962 7.379412491 7.429955863 163733611 oxyR Stress Oxygen stress Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 8.391481912 9.013338105 8.822515134 8.156320823 8.932333206 8.802650054 8.365813808 8.830981758 8.787087773 8.889488654 8.795467955 118581561 pstB Stress Phosphate limitation Pelobacter propionicus DSM 2379 9.031080399 8.891457742 8.515602693 7.85344238 8.360892691 8.579988376 8.985029138 7.568354242 8.963295732 8.093139682 8.211489553 8.743200721 164507722 amyA Carbon cycling Carbon degradation Starch Streptomyces glaucescens superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.550017303 8.439201999 7.882394262 8.068825522 8.410659716 8.35853645 7.801547532 8.328199053 8.14227642 8.246770671 8.437621523 89897111 TehB Metal Resistance Tellurium Desulfitobacterium hafniense Y51 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 8.784628523 8.868984335 8.853046502 8.702810068 8.686231596 8.719425417 8.87580445 9.210474873 9.031531491 9.118073276 8.850876696 8.971653794 84494383 nasA Nitrogen Assimilatory N reduction Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 9.619494299 9.424899807 9.247181757 9.608768099 9.675538983 9.457466228 9.684975538 9.560973828 9.274994967 9.498541648 9.862874835 9.310825771 148557084 nahA Organic Remediation Aromatics Polycyclic aromatics Sphingomonas wittichii RW1 8.916550993 8.923812054 9.16727793 8.731895259 8.93238444 8.787197824 8.429981562 8.966193573 8.727388139 8.764963065 8.948641875 8.991167038 91780664 vanA Carbon cycling Carbon degradation Others Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.131177428 8.004878614 8.319025046 7.777260524 7.808798068 8.027990991 8.05314034 7.394820667 8.298913483 7.639202271 7.976244786 7.967119147 118701837 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.562801924 8.526699856 8.84074862 8.110259827 8.150767103 7.859574928 7.78597819 7.607654783 8.219148693 7.828401241 7.770174731 7.986041976 120591561 TerC Metal Resistance Tellurium Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 8.562628417 8.559311226 8.218991054 8.032801301 8.441774737 8.360963249 8.179336524 8.634385212 8.430836296 8.520076543 8.416356761 8.46281194 39936617 ArsC Metal Resistance Arsenic Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.097667597 9.022914584 8.944708277 8.961751301 8.858398152 8.674731152 8.65230743 8.971325846 8.995634799 9.097038106 9.18613595 9.255844883 128168922 rubisco Carbon cycling Carbon fixation Thermosynechococcus vulcanus superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Thermosynechococcus; 8.71560969 8.771536251 8.594388557 8.464112631 8.622181685 8.634852531 8.361229127 8.70965065 8.468165335 8.647506032 8.631859644 8.765666421 90954583 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9.71764991 9.70209928 9.489483631 8.885863393 8.872390902 9.268094734 9.621997664 9.187281578 9.562967295 9.272145201 9.356124345 9.478305676 114553406 sigma_32 Stress Sigma factors Mariprofundus ferrooxydans PV-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Zetaproteobacteria;order:Mariprofundales;family:Mariprofundaceae;genus:Mariprofundus;species:Mariprofundus ferrooxydans; 8.675431805 8.052943729 8.399441168 8.322278563 8.393985064 8.360522553 8.175093876 8.580917148 8.401155305 8.53742693 8.21783167 8.355043685 25900789 sigma_38 Stress Sigma factors Pseudomonas oleovorans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.575737991 8.381846152 7.719223988 7.997577817 8.084127959 8.333299555 7.521624218 8.537905992 7.984537511 8.126007805 8.33705249 218240655 ara Carbon cycling Carbon degradation Hemicellulose Alicyclobacillus acidocaldarius LAA1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 9.914771797 9.805277035 9.831693876 9.320319339 9.315763092 9.264588441 9.134896692 9.318349777 9.158305113 9.335931548 9.279126018 9.578484182 86160193 cytochrome Energy process Energy process Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 8.181672851 7.93749525 7.376775307 7.582864365 7.583080319 7.408918458 7.337452 7.82265107 7.748339125 7.737428099 8.0253643 17546436 Arylest Organic Remediation Aromatics Other aromatics Ralstonia solanacearum GMI1000 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 8.637328313 8.632693566 8.4282279 8.124329691 8.218420552 8.395821189 8.262898354 8.436751976 8.672945336 8.663336903 8.845790277 8.596374822 119717182 gyrB other category gyrB Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 9.318138463 9.591342423 9.725651691 8.582576135 9.147015665 9.21252256 189202598 ChrA Metal Resistance Chromium Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 9.326563211 8.99993704 9.652790786 9.500250109 9.081664396 9.865124422 9.428651817 9.590670935 8.971719514 170653077 obgE Stress Radiation stress Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 8.320002943 8.065203853 8.086005236 7.979545861 7.71267575 7.7147965 7.714669198 7.90554257 7.68431691 7.820934575 7.574678307 116621176 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 7.752129861 7.870611571 7.561185356 7.650053472 7.608411817 7.615091497 7.546393847 7.35246967 7.7596579 77698229 nosZ Nitrogen Denitrification Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.863289131 8.950826134 8.776189105 8.651441871 8.737999656 8.448955565 8.821742181 8.555121856 8.851231522 8.6432098 8.60759835 8.681929387 108466576 sigma_32 Stress Sigma factors Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 8.393619461 8.450901132 8.47993261 7.669315714 7.543007717 7.912896394 8.133066652 8.152274896 7.905095699 8.026986783 8.147463028 83025955 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 7.952188611 7.935793006 7.570148678 7.78165352 7.731908905 7.835434062 7.786802162 7.758082461 7.44521476 254970944 groEL Stress Heat shock Acidithiobacillus caldus ATCC 51756 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 8.887192578 8.933367607 8.733510239 8.811956636 9.043938119 9.086937293 8.579674739 9.211084286 8.557839552 9.152498644 9.289387363 8.968333614 124258499 hly virulence hemolysin Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 9.470296088 9.639732612 9.519714033 8.932203917 8.974784501 8.803701215 8.972528651 8.803655182 8.943290653 8.95236669 8.881305895 9.127616711 86609809 hrcA Stress Heat shock Synechococcus sp. JA-2-3B'a(2-13) superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.306935629 8.409619405 8.332079452 7.650026407 7.924275871 8.318424348 7.904636329 7.741929086 8.104460881 72161663 pimF Organic Remediation Aromatics Aromatic carboxylic acid Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 8.656661101 8.429166313 8.700773188 7.960892349 7.945072287 8.035415322 7.738306896 7.605251774 8.533523428 7.89545568 7.760527817 8.040872018 34017146 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.419137821 7.177449787 7.5280885 7.390307525 269127406 sigma_70 Stress Sigma factors Thermomonospora curvata DSM 43183 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora;species:Thermomonospora curvata; 8.415350463 8.359773684 8.646638528 8.274912158 8.273450656 8.06904253 7.772133813 8.174458329 8.130397097 8.230656839 8.127319902 8.0152192 255272658 AceA Carbon cycling Carbon degradation others Hyphomicrobium denitrificans ATCC 51888 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 8.13259134 7.794998942 7.644094537 7.746139583 7.894389834 7.782645677 7.916895952 7.489483622 7.761204946 28868696 nitro Organic Remediation Others Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 8.314051854 8.638874647 8.3498731 7.717589132 7.842218689 8.141389179 7.992133708 7.767811496 7.972314168 8.098796002 8.213344906 120404898 obgE Stress Radiation stress Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.737083414 8.751730854 9.043896388 8.045308434 8.550913809 8.51046152 8.01078887 7.857847601 8.500857776 8.269287707 8.450314359 8.398077648 89319578 gyrB other category gyrB Mycobacterium flavescens PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.822898825 8.829538223 8.883382776 8.329044346 8.049288324 8.305633726 8.539562205 8.150958519 8.625063255 8.183375169 7.880249759 8.367252578 226364057 limEH Carbon cycling Carbon degradation Others Rhodococcus opacus B4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 9.652621032 9.474825846 9.467085388 9.263053341 9.420180711 9.696664865 9.558845818 9.483980852 9.716033328 9.428643124 9.416012597 9.558818874 190010047 czcC Metal Resistance "Cadmium,Cobalt,Zinc" Stenotrophomonas maltophilia K279a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 8.375571587 8.484864155 7.966739023 8.037603874 7.775941722 7.469374192 7.875568635 8.144934069 7.944198928 7.774262092 8.054075996 57640772 CopA Metal Resistance Copper Thermococcus kodakarensis KOD1 8.927851966 8.962147996 8.979728131 7.902303171 8.04701722 8.194388309 8.136624628 8.055294738 8.051105267 8.003328108 7.912613479 8.355682973 220724977 katE Stress Oxygen stress Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 8.110119697 8.151691791 8.296639991 7.557158306 8.073173198 8.568167603 8.540241959 8.129293317 8.356393549 8.297317202 7.940086335 8.081610781 158929995 ahpC Stress Oxygen stress uncultured bacterium pEAF66 superkingdom:Bacteria; 8.613958543 8.363086989 7.857258255 7.547561235 7.989715932 8.187434238 7.754231323 8.2646049 7.838086311 8.024360209 7.914848848 38199160 katE Stress Oxygen stress Corynebacterium diphtheriae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium; 9.94201054 9.463913997 9.398902009 9.608661194 9.480089782 9.335330269 9.814887472 9.476409739 9.57890151 9.610596037 9.697128499 9.53816663 187725342 cbdA Organic Remediation Aromatics Chlorinated aromatics Ralstonia pickettii 12J 9.318659354 9.449413917 9.172594843 8.919722459 9.6063797 9.842162392 9.758776339 9.64897338 9.466340951 9.624367655 9.51019451 3114668 phn Organic Remediation Herbicides related compound Pseudomonas stutzeri superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.490575935 8.816234779 8.862202355 8.240780684 8.44537766 8.344735759 7.980225086 8.166034632 8.165671764 8.204579202 8.352750161 8.202227824 2588986 phdK Organic Remediation Aromatics Polycyclic aromatics Nocardioides sp. superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.774919175 8.42268189 8.746567895 8.177276953 8.259001695 8.160762418 8.234306544 7.861861173 8.555959435 7.822328177 7.920921139 8.164739638 146348474 tutFDG Organic Remediation Aromatics BTEX and related aromatics Clostridium kluyveri DSM 555 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium kluyveri; 7.418576115 7.577850961 7.461183662 7.446998141 7.056743233 7.458226067 187604879 SMR_antibiotics Antibiotic resistance transporter Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 7.3773373 7.418382973 7.51304944 7.424181486 7.695268797 199594053 narG Nitrogen Denitrification uncultured bacterium 8.633434763 8.036864232 7.901586813 8.606355444 8.278747946 8.172650254 8.12523115 8.267217559 8.26135467 8.09162206 8.094544623 159043808 CopA Metal Resistance Copper Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 9.445863651 9.443477977 9.453807167 9.710926203 9.652653331 9.368637879 9.855280919 9.688664487 9.650129031 9.669199832 9.671421162 9.672555771 84713005 gyrB other category gyrB Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8.728779248 8.459140865 8.362210824 7.933525202 8.292567767 8.299911228 8.225094589 8.311719148 8.195654337 7.851951396 8.110180359 7.877985648 83846770 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 9.957105524 10.04897236 10.06605029 9.579922113 9.5208621 9.397058973 9.484365608 9.402786553 9.337620136 9.609806065 9.529228515 9.665484234 161394700 ureC Nitrogen Ammonification Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 8.777460344 8.913187134 9.052796198 8.226239427 8.16124983 8.187123416 8.176862131 8.494012979 8.153885972 8.278551058 8.110036595 8.467968157 91787067 fnr Stress Oxygen stress Polaromonas sp. JS666 9.012686838 8.99572019 9.041887244 8.609255934 8.639025034 8.926786995 8.99084399 8.626505278 8.691691626 8.485361249 8.799272693 8.489222586 109452408 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9.0790792 9.183115002 9.082523283 8.827591198 8.781308894 8.711969315 8.584681158 8.836023023 8.565518639 9.115695049 8.889155814 8.851772102 256824988 cap virulence capsule Kytococcus sedentarius DSM 20547 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermacoccaceae;genus:Kytococcus;species:Kytococcus sedentarius; 9.325184531 9.335185746 9.345605947 8.762178418 8.92300033 8.919129302 9.50935867 8.748470158 9.321482056 9.091962623 8.880252401 8.909725153 240009113 sox Sulphur Sulphur oxidation Methylobacterium extorquens AM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 9.210238678 9.328285944 9.354719164 9.412417078 9.522083324 9.303713624 9.339311469 9.523429067 9.28777628 9.439401227 9.245413306 8.958182532 52546288 gyrB other category gyrB Burkholderia andropogonis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.321674831 8.107666054 8.232652819 7.946156755 7.813954664 7.828754826 8.164949701 8.353443813 8.247264914 8.429057778 8.278887602 210049984 bphA Organic Remediation Aromatics Polycyclic aromatics Terrabacter sp. YK1 9.424490782 9.43386604 9.570597332 8.774480942 8.503115292 8.074690016 8.607067202 8.458656719 8.812897838 8.624662845 9.000229585 220716359 bphA Organic Remediation Aromatics Polycyclic aromatics Variovorax paradoxus S110 8.335215474 8.963126103 8.779297783 9.254001495 9.289624233 8.706062043 9.406921153 8.753198816 9.189811827 9.242387796 8.551205454 157679469 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.37725309 8.424314355 8.454023432 7.633357467 7.916247704 8.157147736 8.252580916 8.193217468 8.277302514 7.62344975 7.716595839 7.844390154 85669083 dehH109 Organic Remediation Chlorinated solvents Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 9.897324217 9.878755812 9.9140173 9.282876277 9.211141633 9.2896841 9.473443911 9.374926773 9.44139228 9.591530686 9.701615974 9.698804444 212700784 pcc Carbon cycling Carbon fixation Bacteroides finegoldii DSM 17565 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides finegoldii; 8.195317112 8.32637006 88864332 pstB Stress Phosphate limitation Jannaschia sp. CCS1 9.493280463 9.270311336 9.363675776 8.8054079 8.729737513 8.595160032 8.614733778 7.309307361 8.756359302 8.84335056 9.098988302 9630480 tape_measure_protein Bacteria phage STRUCTURAL Enterobacteria phage N15 order:Caudovirales;family:Siphoviridae;genus:N15-like viruses; 8.57057167 8.923911043 8.515371313 8.220976437 8.70426361 8.958943722 8.796949069 8.978677707 8.595360305 8.528722699 8.382481299 46318035 pcpE Organic Remediation Herbicides related compound Ralstonia sp. SJ98 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 8.816053451 8.548931676 8.215104205 8.794894539 8.847170961 8.653017302 8.643623077 9.004362904 8.945405169 8.721617595 8.598223318 8.680535311 19909661 gyrB other category gyrB Zoogloea ramigera superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Zoogloea; 8.519687331 8.466851554 8.479804157 8.352817007 8.286862997 8.397798393 8.542642997 8.212266187 8.749207495 8.090324571 8.183324362 8.099168516 83576143 ZntA Metal Resistance Zinc Rhodospirillum rubrum ATCC 11170 9.553980276 9.893978299 9.577546897 9.666887133 9.647728633 9.548317571 9.836238297 9.934050196 9.40936595 10.20576398 9.721781267 9.574948092 39547094 mnp Carbon cycling Carbon degradation Lignin Phanerochaete chrysosporium superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 7.364767565 7.134803913 7.002763025 7.577971913 7.104952908 6.930746849 148359519 catB Organic Remediation Aromatics BTEX and related aromatics Legionella pneumophila str. Corby superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella;species:Legionella pneumophila; 8.299316815 8.292107745 8.504076404 7.793720466 7.619670654 7.558508468 7.309316742 7.200776128 7.934076883 7.485679164 7.278507554 7.813362683 91691438 MFS_antibiotic Antibiotic resistance transporter Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.637713314 8.638587451 9.015524536 7.688037658 7.825102162 8.556826541 8.843697673 7.435437053 8.748886586 7.839922036 8.086253853 163746356 pstB Stress Phosphate limitation Oceanibulbus indolifex HEL-45 8.640474127 8.38074705 8.146758683 8.306876021 8.377607091 8.071908452 8.362093504 8.029641739 8.131424503 8.490291387 8.147059333 148834961 pcc Carbon cycling Carbon fixation Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 8.032049411 8.748685453 8.436006241 7.683539028 8.027903526 8.704778419 8.99027922 8.499904504 8.645447241 8.188085342 8.482020909 8.721075095 108757036 vanA Carbon cycling Carbon degradation Others Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 8.562752896 8.693894641 8.645271404 8.052421157 8.202369967 8.216786672 8.305491917 8.256736129 8.376524683 8.476803875 8.336459994 77385407 AceB Carbon cycling Carbon degradation others Pseudomonas fluorescens Pf0-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.472716539 8.185724309 7.977053091 8.090301008 8.186060721 8.132578561 8.228297719 7.887856822 8.389302724 8.045125532 83951805 ArsC Metal Resistance Arsenic Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 8.441281024 8.689446506 8.302730751 7.469228836 7.993556898 8.156075252 8.32709798 7.124543104 7.920165358 7.541738875 8.04281929 124516202 ABC_transporter_II Bioleaching other category Leptospirillum sp. Group II UBA 8.646659982 8.724614126 8.784280713 7.941507233 7.868978308 7.94842757 7.852561408 7.627828981 8.073772692 7.882058826 7.650091003 7.979429974 255925129 fnr Stress Oxygen stress Actinosynnema mirum DSM 43827 8.736747496 8.865799643 8.627540606 8.357611908 8.386361954 8.601038319 8.608457502 8.372717307 8.550851864 8.55968357 8.608455886 8.481812496 90903271 aoxB Metal Resistance Arsenic uncultured bacterium superkingdom:Bacteria; 8.072899494 7.67418686 7.393110204 7.577058068 7.55615482 7.750363632 7.715784668 7.878287078 8.014479427 7.669466323 7.766166911 190894679 MFS_antibiotic Antibiotic resistance transporter Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.74968404 8.728745767 8.376185535 8.460872 8.603771796 8.681771051 8.853452601 8.641753445 8.647339023 8.778463902 8.699391477 8.699271511 119714242 merB Metal Resistance Mercury Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.620238862 8.925201342 9.072977136 8.557156333 8.818290239 8.849825636 9.192149095 9.154871281 9.052071907 9.569892605 9.561440604 9.228653336 192808852 Al Metal Resistance Aluminum Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.769160904 8.707473532 8.679259253 8.259428129 8.210947718 8.186510247 8.347963663 8.208970823 8.451221972 8.136375926 8.120738825 8.329490519 212711321 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 8.343420107 8.191294322 8.158663673 7.881352251 8.261666144 8.107032119 8.120250373 7.926126822 254386883 amyA Carbon cycling Carbon degradation Starch Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.837712101 9.250030751 9.256453244 9.617764426 9.580358155 9.582630928 9.273232676 9.645275641 9.442366508 9.679207347 9.740750255 9.053299726 53804054 Mex Antibiotic resistance transporter Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 8.881224794 8.899815522 8.857599695 8.71080699 8.56995149 8.636571449 8.608253045 8.661831668 8.689441304 8.720311498 8.599070474 8.784722298 257386425 pstB Stress Phosphate limitation Halomicrobium mukohataei DSM 12286 8.547362505 8.529066282 8.509719016 8.913277984 9.0750904 8.843317992 8.410455346 8.893272545 8.503894122 8.5454764 8.497854442 8.855803925 149185099 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Erythrobacter sp. SD-21 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 8.233018972 8.326230816 8.478381571 7.896337633 7.77493597 7.92976594 7.864631872 7.526546657 8.424821576 7.748097506 7.93445097 7.703836059 91786039 xylC Organic Remediation Aromatics BTEX and related aromatics Polaromonas sp. JS666 8.892316823 8.992778647 9.415061027 8.59666108 8.740766109 8.604609716 8.564825409 8.959910964 8.888656215 8.945870409 8.970954338 9.02076136 115365967 SMR_antibiotics Antibiotic resistance transporter Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 9.281235652 9.467880538 9.453548455 9.149158459 9.160896165 8.835320936 8.854025364 9.281889808 8.930919827 9.242611527 9.055778051 9.338101497 210159723 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Collinsella stercoris DSM 13279 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella stercoris; 8.619184196 8.305884558 8.213637957 8.348643412 7.745124982 8.409470157 8.278996956 8.265044764 8.084582321 7.903348578 8.10311796 255263885 glnA Stress Nitrogen limitation Thalassiobium sp. R2A62 8.276085819 8.211158884 8.236062454 8.12394699 8.057871902 8.008974157 8.585497949 8.335254028 8.451000003 8.681262188 8.067582346 194336204 SMR_antibiotics Antibiotic resistance transporter Pelodictyon phaeoclathratiforme BU-1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 8.189395274 8.069356502 7.410606605 7.185491087 7.433469534 7.165916293 7.002294016 7.733512144 196224796 arcB Stress Oxygen limitation Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 9.280080223 9.228235855 9.23604017 9.379706197 9.230181652 9.148282234 9.125744698 33577853 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bordetella bronchiseptica RB50 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella bronchiseptica; 8.466672463 8.333710456 8.188909092 8.267086026 8.151267065 8.067066865 8.412811829 8.285727288 8.158369863 8.095198596 8.021460063 7.963156586 119535241 CopA Metal Resistance Copper Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.669191351 8.283020484 8.784979046 8.75964513 8.972374135 7.987150399 8.826227937 8.466934734 8.376647381 8.735913119 7.841297694 83646716 narJ Stress Oxygen limitation Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 9.298755706 8.935139684 9.167243477 8.799823396 8.750237242 8.34988456 8.661620725 9.08548865 8.694829122 8.729017604 8.790467993 110822274 ppx Phosphorus Phosphorus utilization Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.660171201 8.731443475 8.353795428 8.333408482 8.089363419 8.050023814 8.011768408 8.017289109 8.492372066 8.60005621 8.591478584 219954046 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Anaeromyxobacter dehalogenans 2CP-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 8.326463581 8.643452728 8.532236518 7.936063757 8.199326782 8.177779725 8.559166012 7.831431263 8.608843148 7.825573955 7.978890104 8.271624873 260903946 katE Stress Oxygen stress Brevibacterium linens BL2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium linens; 8.180623211 8.060471534 8.075546851 7.724838233 7.694205657 7.604516161 7.578883121 7.587885277 8.112426598 7.978506909 8.220410719 92441508 amyA Carbon cycling Carbon degradation Starch Mycobacterium sp. KMS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 9.17621765 9.194715343 8.947791433 8.072056925 8.742997209 8.71296595 8.939671613 8.041561272 9.054374866 8.203007911 8.483709019 8.229164385 27657633 chnB Organic Remediation Other Hydrocarbons Rhodococcus sp. Phi2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.732949489 8.46700075 8.59923364 8.26760347 8.340550093 8.081041084 8.24831477 8.00833767 8.070572544 8.308009092 8.239794408 144905863 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.933965085 8.898962579 8.748585877 8.594502399 8.460392741 8.409850853 8.192504997 8.64318845 8.354329513 8.435378875 8.477409592 8.642923025 223490247 CopA Metal Resistance Copper Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 9.265004219 9.188837085 9.462438483 8.932362792 8.954199114 8.753097427 9.009988049 9.027221786 8.648757561 8.971026546 8.89992513 8.780883717 190715232 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.829559044 8.591639193 8.812913192 8.661347779 8.619177576 8.478890602 8.507414996 8.868848267 8.600061723 8.862333293 8.866662139 8.892090403 224818645 sox Sulphur Sulphur oxidation Thioalkalivibrio sp. K90mix superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 8.858732051 8.997890904 8.976106186 7.92736205 8.203852315 8.283641569 8.574237183 7.734333523 8.467616182 8.2006954 8.189757526 8.338652152 192283014 fnr Stress Oxygen stress Rhodopseudomonas palustris TIE-1 8.457850174 8.472104013 8.634807162 8.003180711 8.439931437 8.227316305 8.337037135 8.511775711 7.98025839 145217893 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 10.08550627 9.954778593 9.838229199 10.461233 10.50653708 10.2096975 9.892700604 10.50524126 10.06310326 10.04003949 9.6698855 10.19272944 223892151 sigma_24 Stress Sigma factors bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 8.604032892 8.614849681 9.281986761 8.965344231 8.974627617 8.658767681 8.884547359 9.410610228 8.716762448 9.25324753 9.07059799 9.277714245 83814271 pstC Stress Phosphate limitation Salinibacter ruber DSM 13855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 9.943617941 9.729351191 9.330014351 10.43810519 9.79613427 10.07089177 10.15099767 9.912468074 9.768091274 9.73078886 9.274809986 260220988 pstB Stress Phosphate limitation Curvibacter putative symbiont of Hydra magnipapillata 9.030329186 9.005876463 9.02863449 8.048452992 7.949509333 8.703943541 8.709901539 9.037308398 8.595109048 8.265921158 8.874380226 124007696 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Microscilla marina ATCC 23134 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Microscilla;species:Microscilla marina; 8.527211896 8.323856316 8.444319204 8.258082115 7.784544684 8.065931233 7.543586005 7.59708504 8.265350929 7.56415181 7.612791157 8.051844501 124363917 mcrA Carbon cycling Methane Methane production Methanocorpusculum labreanum Z superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanocorpusculaceae;genus:Methanocorpusculum;species:Methanocorpusculum labreanum; 9.040322646 9.468736669 9.314632997 8.864257451 9.241865001 9.658804466 9.795958519 9.517803667 9.189141337 9.130765734 9.41994151 9.641745311 259169016 ahpC Stress Oxygen stress Lactobacillus antri DSM 16041 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus antri; 8.630435872 8.510819841 8.443404867 8.443942878 8.363479323 8.206357911 7.986343019 8.439861707 8.220302827 8.195636926 8.495075901 8.022659458 77954491 mer Metal Resistance Mercury Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 8.368771456 8.123065532 8.417722253 7.438963633 7.441798662 7.550539915 7.637434641 7.087044537 7.823422415 7.236361179 7.666321372 3192685 terminase_large_subunit Bacteria phage REPLICATION Bacteriophage N15 order:Caudovirales;family:Siphoviridae;genus:N15-like viruses; 7.570456044 7.648613507 7.437178566 6.83856606 7.217171736 7.813818942 7.457799861 7.37791177 7.461162825 28377119 amyA Carbon cycling Carbon degradation Starch Lactobacillus plantarum WCFS1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus plantarum; 8.556202257 8.607783728 8.36990627 7.954090935 7.976562197 8.168433823 8.170498532 8.304595409 8.576350149 8.451152734 8.344905432 8.503608329 151365171 proV Stress Osmotic stress Shewanella baltica OS185 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 8.125878549 7.823575156 7.352107209 7.059730785 7.117759425 6.627009491 7.463097211 7.343888623 7.195527461 7.068438184 254984297 cytochrome Energy process Energy process Geobacter sp. M18 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 9.597130869 9.646288168 9.725954685 9.206579768 8.294549129 8.83109993 9.106455351 8.718737392 8.8577454 8.821415604 8.768501447 8.993482198 12751535 pcc Carbon cycling Carbon fixation Streptomyces venezuelae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.524644685 8.618367086 8.52224022 7.708668612 7.864083201 8.070560767 8.393183314 7.387112284 8.510069831 7.868949526 7.991542321 8.137581014 15898856 ferredoxin_oxidoreductase Bioleaching Electron transport Sulfolobus solfataricus P2 8.497202907 8.364279266 8.417649347 8.177788359 7.827992055 7.853859734 7.403613924 7.358758656 8.139022475 7.614545514 7.526447691 7.617242005 158523504 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 9.363801304 8.703789411 8.712357177 9.064504999 8.598951853 8.256878954 8.857822577 8.707772677 9.008006783 8.449634427 8.670333945 8.272133014 94471123 narG Nitrogen Denitrification uncultured bacterium 8.434503173 8.320316799 8.194392455 8.065339267 8.164864409 8.059301485 8.127636519 8.576781449 8.36660392 8.342967182 8.216155193 8.269106306 260864159 sigma_24 Stress Sigma factors Ammonifex degensii KC4 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Ammonifex;species:Ammonifex degensii; 9.129294179 8.915861902 9.026039107 8.570912452 8.456443158 8.411974756 8.408137608 8.402359858 8.460719488 8.333186371 8.184063631 8.691914299 222524679 obgE Stress Radiation stress Chloroflexus sp. Y-400-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus; 8.690389974 9.040332208 8.887794518 9.19233838 9.376589715 9.390564288 9.142877504 9.314101262 8.985690468 9.540246261 9.502135595 8.771203728 46395065 katE Stress Oxygen stress Paracoccidioides brasiliensis superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides; 8.495816509 8.578647621 8.637713032 9.017067629 9.068474298 9.040670417 8.98214926 9.260153593 8.848831303 9.171523733 9.198732075 8.491378793 208008808 atzA Organic Remediation Herbicides related compound Aliivibrio salmonicida LFI1238 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Aliivibrio salmonicida; 8.990364135 8.6484367 8.970580397 7.951955054 7.845103969 7.825365789 7.108182896 6.873763826 7.72043599 7.755039983 7.898245782 94496263 ahpC Stress Oxygen stress Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.315530913 8.164175472 8.584850991 7.962380948 7.948705341 8.004207326 7.766731717 7.805686235 8.352203531 7.736897862 7.745355983 7.630327761 3820518 phdCI Organic Remediation Aromatics Polycyclic aromatics Burkholderia sp. RP007 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.89739876 8.214145726 8.471350437 8.715039234 8.614201454 8.363443486 8.651666601 8.614118936 8.774455493 8.461160004 8.713852785 8.524105596 116750737 MFS_antibiotic Antibiotic resistance transporter Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 9.096741473 8.970322032 8.993097382 8.677439692 8.66596842 8.693336008 8.499817069 8.681803504 8.600653007 8.776611602 8.715611617 8.847653889 283780321 Tet Antibiotic resistance other Pirellula staleyi DSM 6068 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Pirellula;species:Pirellula staleyi; 9.198363449 9.139211699 9.124282213 8.908667809 8.774384042 9.364428081 9.439809372 9.056166466 9.254786682 8.956117705 9.106351007 8.886787258 211960474 pcc Carbon cycling Carbon fixation Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 8.246295368 8.213560057 8.50928675 7.884445776 7.455249285 7.514022014 7.287843088 7.473643577 8.025572187 7.666540234 7.519706567 7.739580585 157678998 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9.103817024 9.05082446 9.194284471 8.345303505 8.696492234 8.837659189 8.896516315 8.809291807 8.77539658 8.878294283 8.930577399 8.781733814 118016696 phn Organic Remediation Herbicides related compound Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 8.207605467 8.142348597 8.4549369 8.025195884 8.110950681 8.142563979 8.156871954 8.276803619 8.343376824 8.14349599 8.108972765 7.896015078 121606885 CadA Metal Resistance Cadmium Polaromonas naphthalenivorans CJ2 9.852889998 9.785940415 9.843829328 9.55781388 9.435405961 9.296645328 9.395014549 9.56736903 9.588620155 9.551402717 9.41577117 9.533068014 40253087 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.473789063 8.302730425 8.592033724 8.279096147 8.121224132 7.829118093 7.888747376 8.130745397 8.214942236 8.038656226 8.185090865 7.901495601 94985251 exaA Organic Remediation Chlorinated solvents Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 9.218131422 9.552255067 9.474596796 8.552868185 8.640852712 9.079671724 9.629207821 9.003573482 9.244070937 8.863699131 9.063011147 9.240684743 91699761 pimF Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 8.095325214 8.037552153 8.434752852 7.762826073 7.828705914 8.070714876 7.742117222 7.860293778 8.260316602 7.766933403 8.045092943 7.837342853 126706959 alkB Organic Remediation Other Hydrocarbons Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 8.340750332 8.162596998 8.234531478 8.270819283 8.019001505 8.184866532 7.867631194 8.541083688 8.124423569 8.047444999 8.181934425 7.990737545 31618994 glnA Stress Nitrogen limitation Mycobacterium bovis AF2122/97 9.06213233 8.890071926 9.0002068 8.276873412 8.547589822 8.428266158 7.984215547 8.389722764 8.423833088 8.455487641 8.895891136 78184480 sigma_70 Stress Sigma factors Synechococcus sp. CC9902 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.903485705 8.94794917 9.316760103 8.423022399 8.38809978 8.380720013 8.485279666 8.53655009 8.3289461 8.439716574 8.453046719 8.616743725 73762870 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.825257292 8.922632571 8.700278711 8.366774291 8.163789074 7.990296252 7.803335594 7.901833972 8.299223877 7.669626082 7.886720729 8.057459368 262375833 oxyR Stress Oxygen stress Acinetobacter lwoffii SH145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter lwoffii; 8.364199912 8.563484257 8.086491611 8.462476963 8.228691432 8.18274904 8.706599731 8.39419009 8.406410961 8.276538897 8.359592284 167072979 nmoA Organic Remediation Aromatics Nitoaromatics Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.496445434 8.518818364 8.892186882 8.58821629 8.553227841 8.444695628 8.288985899 8.475578996 8.666071938 8.821993759 8.729372246 8.797247473 117577811 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Gramella forsetii KT0803 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Gramella;species:Gramella forsetii; 8.883548336 8.715717743 8.883331311 8.158038604 8.062292396 7.963253226 7.930398888 7.81304505 8.196922145 7.933214095 7.837607983 8.19360477 83955194 ZntA Metal Resistance Zinc Sulfitobacter sp. NAS-14.1 8.827448124 8.80448719 8.497198982 8.233148682 8.148637859 8.13147148 7.98273716 7.982687331 7.961995739 8.224487544 8.163116637 8.35780587 227181300 katA Stress Oxygen stress Corynebacterium glucuronolyticum ATCC 51866 9.087336775 9.323265261 9.297870731 9.223311339 9.45943547 9.55025152 9.35627941 9.721656854 9.191688922 9.535622603 9.685488539 9.52730952 184194464 cap virulence capsule Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.154686767 8.417093314 7.186225524 7.25875034 7.329353144 6.923955303 6.877305066 7.118043302 6.885516271 82717665 TerC Metal Resistance Tellurium Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 9.451500005 9.237671846 9.254434543 8.593468617 8.704274389 8.641128782 8.690858006 8.512703468 8.695722864 8.735311966 8.628854996 8.97372107 237746573 pstB Stress Phosphate limitation Oxalobacter formigenes HOxBLS 8.850483394 8.786628726 8.940130475 8.54054321 8.672866372 8.598582333 8.627384565 8.524507255 8.63871087 8.696571032 8.667915726 8.832331608 17548637 iro virulence Ralstonia solanacearum GMI1000 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 8.807803799 8.935548863 9.075382867 8.70444027 8.66080144 8.274036615 8.254482902 8.576071234 8.588610181 8.511013867 8.210383247 8.417042537 187919112 sigma_24 Stress Sigma factors Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8.192458897 8.529593605 8.362201224 7.851839312 7.795696392 7.69131 7.602654031 7.523752996 7.894345712 7.728773745 7.843869884 219677944 exaA Organic Remediation Chlorinated solvents gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.365009266 8.290396947 8.41159837 8.297680255 7.892627206 7.96400505 8.092238767 8.060090126 7.730455682 7.915770469 7.863388362 8.002514971 29652552 narG Nitrogen Denitrification uncultured bacterium 9.437474942 9.484829039 9.386755139 8.584628158 8.83232898 8.839947398 9.215243591 8.452097221 9.242077259 8.5701555 8.679421023 8.813396048 145231006 phenol_oxidase Carbon cycling Carbon degradation Lignin Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8.392332135 8.490355187 8.446092237 7.98114588 7.932484412 7.885869144 7.463288937 6.928868648 7.629993416 7.190291047 7.374038412 7.682756374 160942351 tutFDG Organic Remediation Aromatics BTEX and related aromatics Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 8.549046466 8.660616344 8.659682444 8.067544182 7.980917138 8.273480693 8.138511411 8.159868749 8.480892474 8.272304888 8.25221126 8.355185055 15964285 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 8.34594556 8.512246784 8.460522456 8.416779419 8.545722724 8.604955641 8.78102445 7.340743531 8.750312053 8.065134934 7.837963562 7.997659059 86357913 Catechol Organic Remediation Aromatics Other aromatics Rhizobium etli CFN 42 8.31413896 8.127130686 8.203374731 8.266812817 8.571617072 8.353649181 8.04450523 8.540699181 7.9748944 8.443053151 8.285123031 8.51692865 287454 B_lactamase_A Antibiotic resistance Beta-lactamases Streptomyces cellulosae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.36206304 8.473699058 8.253875806 8.645236221 8.585457254 8.689650303 8.655043509 8.63967422 8.652872601 8.84984329 8.699363314 89068349 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Oceanicola granulosus HTCC2516 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 8.201572174 8.285025267 8.209856973 7.668401072 8.536038446 8.526678223 8.338672256 8.509611645 8.302425453 8.155049507 8.236351641 134045346 glucoamylase Carbon cycling Carbon degradation Starch Methanococcus maripaludis C5 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanococcaceae;genus:Methanococcus;species:Methanococcus maripaludis; 8.786668897 8.785965344 8.540329919 7.962643865 7.867636303 7.999485964 7.880973542 7.396207757 8.067616765 7.782548938 7.674879992 8.054391362 117981544 dehH109 Organic Remediation Chlorinated solvents Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.38337341 8.109089688 8.195508248 8.492427334 8.42398197 8.07220955 8.067217478 8.570231996 8.32695524 8.279092408 8.150285081 8.070785994 99080256 sigma_24 Stress Sigma factors Ruegeria sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8.790875318 8.197597458 8.17186866 8.493182134 8.455563958 8.37930891 8.3301905 8.326284999 7.711370123 8.229863153 8.066522709 8.061396313 213964561 sigma_70 Stress Sigma factors Corynebacterium amycolatum SK46 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium amycolatum; 8.913097413 8.742776988 8.585922076 8.333317863 8.317445138 8.482114798 8.362040473 8.702858233 8.376156848 8.575113974 8.643019873 8.865829779 149820643 ahpC Stress Oxygen stress Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 8.280897387 8.33938464 8.412038344 7.921798216 8.060758568 8.410811954 8.541547207 7.62351978 8.693653033 8.053329318 8.199344093 8.145504649 222478940 pstB Stress Phosphate limitation Halorubrum lacusprofundi ATCC 49239 9.561488778 9.617738194 9.676804397 9.28948544 9.155398848 8.973840826 8.936820561 9.211876742 8.723672451 9.144503635 9.099194507 9.387034045 270731355 sigma_70 Stress Sigma factors Frankia sp. EuI1c superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.676455742 8.148394996 8.136951341 8.699940914 8.715180336 8.184900143 8.581173545 8.5566044 8.662725777 8.417729556 8.4533148 8.271130218 18027860 napA Nitrogen Dissimilatory N reduction Actinobacillus actinomycetemcomitans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Aggregatibacter; 7.24293184 7.364942445 7.563629596 7.062646951 8.03873571 7.407794326 7.51418854 7.386519282 13092864 ZntA Metal Resistance Zinc Mycobacterium leprae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 9.093793843 9.039486937 9.188605709 8.543200787 8.56878283 8.494714368 8.521780241 8.546709776 8.481191184 8.621866921 8.552636557 8.604404873 122937809 ara Carbon cycling Carbon degradation Hemicellulose Geobacillus stearothermophilus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.199963785 7.058466864 6.9179744 7.018901441 7.254892371 7.260550173 71736841 katE Stress Oxygen stress Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 8.298177326 8.556001987 8.168682604 8.120105423 8.073178726 8.067856459 8.01316862 8.255620606 8.351400293 8.374258572 8.269049032 8.399622949 112774547 xylG Organic Remediation Aromatics Aromatic carboxylic acid Delftia sp. AN3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia; 9.032364171 8.978685352 8.975005545 8.652771478 8.684158022 8.435812885 8.462551677 8.442344641 8.697573644 8.507001755 8.553330059 8.498958299 161389825 CopA Metal Resistance Copper Phaeobacter gallaeciensis BS107 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 8.774125638 8.653283908 8.99509947 8.194190793 8.188043414 8.188338521 8.356063938 7.725914116 8.504211922 8.051622703 7.91032162 8.24559243 150019479 cellobiase Carbon cycling Carbon degradation Cellulose Clostridium beijerinckii NCIMB 8052 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium beijerinckii; 8.593078738 8.093223979 8.255144206 7.995576227 7.650573273 7.508799349 7.432610097 7.5460573 269096893 cda Carbon cycling Carbon degradation Starch Sanguibacter keddieii DSM 10542 9.329402486 9.42965075 9.312534863 9.240500302 9.135590204 9.173258287 9.17350521 9.40263213 9.14490644 9.36647019 9.237709972 9.327090724 260895900 endochitinase Carbon cycling Carbon degradation Chitin Vibrio parahaemolyticus Peru-466 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 8.17619148 8.229767321 8.533746857 8.317826968 8.518242727 8.144941884 8.161612666 8.530909368 8.207735968 8.407461906 8.176108052 8.315592461 87281183 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.005381927 9.168332017 9.15525625 8.714095431 8.642397598 8.318486148 8.331011101 8.279261073 8.551492545 8.320961688 8.415829884 8.608304198 27657619 chnC Organic Remediation Other Hydrocarbons Arthrobacter sp. BP2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8.374670624 8.238135315 8.178673401 8.27465539 8.342461368 8.024366538 8.280813185 8.544826412 8.494138434 8.375719995 8.160157124 8.282371576 270495542 sigma_32 Stress Sigma factors Acidovorax avenae subsp. avenae ATCC 19860 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax avenae; 8.631263858 8.445399178 8.453844833 8.042686781 8.47427277 8.422049968 8.641319165 7.630562919 163742273 glnA Stress Nitrogen limitation Phaeobacter gallaeciensis 2.10 8.665059257 8.840498172 8.777054651 7.988388568 7.874507769 8.164919488 8.279778585 7.569919983 8.362087441 7.964385242 7.99024282 8.106397967 226317234 pcc Carbon cycling Carbon fixation Deinococcus deserti VCD115 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 9.734941961 9.409646879 9.26339685 9.850530235 9.85011305 9.660157306 9.835193625 9.689757057 9.342649999 9.259027959 9.385762176 9.117880759 186970683 hrcA Stress Heat shock Elusimicrobium minutum Pei191 superkingdom:Bacteria;phylum:Elusimicrobia;class:Elusimicrobia;order:Elusimicrobiales;family:Elusimicrobiaceae;genus:Elusimicrobium;species:Elusimicrobium minutum; 8.902648314 8.665434157 9.036596401 8.076372953 8.221953484 7.912429775 7.587306154 7.733503606 7.639030272 7.591387353 8.14586586 110830374 pcc Carbon cycling Carbon fixation Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 9.437273597 9.464461775 9.262774716 10.21786153 9.751001495 9.156957238 9.834843546 9.848334265 9.542439404 9.678913575 9.421169628 9.085104418 149276799 4HBH Organic Remediation Aromatics BTEX and related aromatics Pedobacter sp. BAL39 8.783691468 8.749074006 9.040094141 8.244542637 8.046261526 8.109397783 8.029830423 7.625385439 8.198677576 8.037382623 8.021403436 8.42753708 67852784 fnr Stress Oxygen stress Crocosphaera watsonii WH 8501 8.59232463 8.52988719 8.685553049 7.929653433 7.855402701 8.003301751 7.628470129 7.85913844 8.185128506 7.762042116 7.830354737 8.118142375 33320475 dsrB Sulphur sulfite reductase Desulfotignum balticum superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfotignum; 9.100522355 8.962329852 9.193789754 8.534951353 8.65717765 8.3842992 8.620369963 8.765327622 8.400519369 8.858056803 8.57176552 8.900875701 4580557 tfdB Organic Remediation Aromatics Chlorinated aromatics unidentified bacterium 202NPUT superkingdom:Bacteria;phylum:Proteobacteria; 8.697462964 8.591356928 8.793215406 8.067694606 8.391380549 8.36760808 8.064315603 8.256996764 8.242946583 8.265908136 8.591597775 8.402221519 222354238 hao Nitrogen Nitrification uncultured bacterium superkingdom:Bacteria; 8.14462982 7.945222438 7.674699155 7.394803708 7.421861501 6.910924447 7.200384832 7.584985739 7.50629476 7.576332182 153884706 chnB Organic Remediation Other Hydrocarbons Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.228086765 8.212854963 8.546669714 7.792419945 7.956780795 8.172947882 8.093710123 7.351967247 8.480039716 7.821329937 7.443680269 7.699783961 119671039 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8.644660217 8.539692636 8.249749229 8.240990681 8.449050752 8.617475784 8.412570084 8.44374884 8.574313079 8.56904153 8.81058775 171677482 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Podospora anserina superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 8.720843583 8.319888928 8.101215447 7.720594887 7.49089318 7.983920038 8.027340342 8.069366946 7.959886252 7.908635183 158139518 pstA Stress Phosphate limitation Alkaliphilus oremlandii OhILAs 9.337216412 9.2390778 9.485513298 8.581133655 8.492161009 8.274275085 8.59690853 8.256691099 8.550105264 8.443730419 8.351424647 8.823738114 117577689 CopA Metal Resistance Copper Gramella forsetii KT0803 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Gramella;species:Gramella forsetii; 9.210436075 9.291563348 9.66469891 8.973107152 8.793649195 8.807622595 8.616758296 8.564649361 8.636405693 8.590447207 8.742997578 9.239753575 238721800 proW Stress Osmotic stress Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 8.542686097 8.32558862 8.404033632 8.418080382 7.59150586 7.599764015 7.570078914 8.097799301 8.05719825 8.047850731 7.969127169 56551946 pstB Stress Phosphate limitation Zymomonas mobilis subsp. mobilis ZM4 8.367499058 8.361760694 8.589872809 7.666411933 7.933677396 7.731551147 7.251438033 7.414343823 7.732463545 7.720504694 7.272476218 7.820829974 126103968 CopA Metal Resistance Copper Rhodobacter sphaeroides ATCC 17029 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 10.40268685 10.42612209 10.42135759 9.85842305 10.06105428 9.839083315 9.786610734 9.740780271 9.815363209 9.740257293 9.944389347 10.01434316 116620135 sigma_70 Stress Sigma factors Solibacter usitatus Ellin6076 9.300528461 8.932933006 8.740614731 8.940633422 9.048517969 8.873087364 8.839955557 8.961090043 8.999056954 115422863 nagK Organic Remediation Aromatics Aromatic carboxylic acid Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 8.290748739 8.610901598 8.545611857 8.616573683 8.715743979 8.679927185 8.628834587 9.059177845 8.793512461 8.978055064 8.638013572 8.962846138 139003429 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.622742825 8.929715575 8.937993469 7.685313859 7.92581509 8.504452827 8.772464327 8.477494851 8.890136265 8.474252125 8.354348937 8.429384417 87302713 pstB Stress Phosphate limitation Synechococcus sp. WH 5701 8.925671232 8.90629706 8.622303944 8.265616025 8.661272344 8.978596238 9.054492688 8.219094104 9.222455845 8.67133451 9.068054908 78194519 pimF Organic Remediation Aromatics Aromatic carboxylic acid Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 8.935416085 8.736920197 8.835373999 8.102222595 8.072258655 8.119601707 8.142024692 8.10040245 8.304936343 8.051873159 7.968932907 8.364604473 190894999 glucoamylase Carbon cycling Carbon degradation Starch Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.852811612 9.130687437 9.104363888 8.42260799 8.299073218 8.308209078 8.692632727 8.65952648 8.247562802 8.738036512 8.764151155 8.445823717 84391003 nagG Organic Remediation Aromatics Aromatic carboxylic acid Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 9.023009652 9.123653238 9.26951535 8.630691791 8.582915038 8.484669298 8.334286771 8.224209509 8.315135714 8.274446624 8.213026072 8.708206239 114339494 pstB Stress Phosphate limitation Maricaulis maris MCS10 10.04867874 10.09841738 10.27175598 9.677446152 9.777097018 9.469476807 9.532807933 9.985405309 9.617734344 9.841245616 9.963648826 10.17505601 157918336 xylA Carbon cycling Carbon degradation Hemicellulose Salinispora arenicola CNS-205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 8.075899141 7.944491937 7.882749734 7.703526231 7.565356906 7.073434314 7.655622251 8.145239101 7.738809524 7.73067383 7.028293584 83701114 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.553855048 8.458824871 8.2891164 8.036721051 8.24675288 8.262034379 8.280330581 7.449922487 256669450 glucoamylase Carbon cycling Carbon degradation Starch Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.504738034 8.461950993 8.370083093 8.135270145 7.982664685 8.141614446 8.379495501 8.186742249 8.399931134 8.085766081 8.22364 8.292593597 91684922 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.207649283 9.160362466 9.067839171 9.501363513 9.424016595 9.048658055 9.565807362 9.420652882 9.205495259 9.493600347 9.252357066 9.232096458 88783794 sigma_24 Stress Sigma factors Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 8.875833677 8.961784227 9.230509394 8.694248753 8.397729168 8.270179573 8.049891806 8.227513314 8.114435533 8.056138745 8.548478799 110347018 CadA Metal Resistance Cadmium Mesorhizobium sp. BNC1 9.207352368 9.046694879 9.222909276 8.706126713 8.382435208 8.579910253 8.414934724 8.126237721 8.588325197 8.294900858 8.588238929 237637232 nirS Nitrogen Denitrification uncultured bacterium 8.379475571 8.83518318 8.70124682 8.640121448 8.945001589 8.718435486 8.532792502 9.231206847 8.765349887 8.810060755 8.922864776 8.519863461 85825422 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.300690332 8.36731255 7.806148791 7.6237271 7.695978533 7.339306273 7.698675715 7.778369061 7.824683708 7.518571568 7.699347065 42741023 exoglucanase Carbon cycling Carbon degradation Cellulose Trichoderma asperellum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Trichoderma; 8.282276426 8.076126277 218780841 mer Metal Resistance Mercury Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 8.790587032 8.493169034 8.89438998 8.503055745 8.42953613 8.293293329 8.445572045 8.832239675 8.319753286 8.587597432 8.632968207 8.314386388 32446193 grpE Stress Heat shock Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 8.351822195 8.622972092 8.297772607 8.336649488 8.237091635 8.022068508 8.845572045 8.097045011 8.23814998 8.393907337 8.402118762 163758088 glnA Stress Nitrogen limitation Hoeflea phototrophica DFL-43 9.463447899 9.377650606 9.724833391 8.91781062 8.860941219 8.73363178 8.397437253 8.422925394 8.69705708 8.816536252 8.687912361 9.099884996 126358823 czcC Metal Resistance "Cadmium,Cobalt,Zinc" Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.652269909 8.810854359 8.603298767 8.631168419 8.445666863 8.72741911 8.682984046 8.765134967 8.751150597 8.887001248 8.949930415 8.908040208 78609680 ZntA Metal Resistance Zinc Lactobacillus sakei subsp. sakei 23K 8.852726938 8.683944842 8.846426941 8.15122546 8.403735287 8.049858564 8.757048326 8.463507425 8.212404567 8.787778831 8.80963633 8.682482964 21929226 lip Carbon cycling Carbon degradation Lignin Phanerochaete sordida superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 7.932329525 8.508409787 8.285844322 7.759753221 8.203249367 8.618566536 8.660696418 8.387055871 8.601673872 8.415109826 8.438089291 8.43825281 118701991 vanA Carbon cycling Carbon degradation Others Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 9.101570442 9.161445069 9.055814284 8.656638351 8.490977355 8.570019748 8.496042464 8.383142725 8.529061784 8.431645459 8.426872958 8.634497842 198246673 gyrB other category gyrB Acidithiobacillus ferrooxidans ATCC 53993 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 8.719609426 8.821750828 8.708791168 8.934850475 8.981060946 8.961902867 8.630261539 9.234664473 8.680564776 8.912819917 8.95155245 8.693689832 177670513 AceB Carbon cycling Carbon degradation others Micrococcus luteus NCTC 2665 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus;species:Micrococcus luteus; 8.676482668 8.789609792 8.316305845 8.687067453 8.98564553 8.99905255 8.796586198 9.514518178 8.688725653 9.252777156 9.220509621 8.862948222 161163729 glx Carbon cycling Carbon degradation Lignin Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 9.579100095 9.55634825 9.561981203 9.40547594 9.221892317 9.069892647 9.292905404 9.275816803 9.123385834 9.434708488 9.3217953 9.22189391 159036203 CopA Metal Resistance Copper Salinispora arenicola CNS-205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 8.822247258 9.13186475 8.692416953 8.463272321 8.645550187 8.84398908 9.23082067 8.902935785 9.087164326 8.480078101 8.5586196 8.539843406 110599524 linB Organic Remediation Pesticides related compound Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.661409115 8.506048593 8.916113893 8.167365355 7.83486669 8.09498433 7.955422765 8.060979209 7.985738116 8.229523255 8.137563261 8.231815511 121603932 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8.691120092 8.576828768 8.811211646 8.20568984 8.236021822 8.187088982 7.870487074 8.197354127 8.055305674 8.290698482 8.365311373 7.986759409 87280986 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.453523141 8.76462806 9.114638206 8.811669729 8.698376424 8.448578444 8.712065544 9.032806645 8.678891432 8.940479303 8.899263218 8.956647046 39650121 pcc Carbon cycling Carbon fixation Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.664030403 8.586590149 8.541964925 8.662970098 8.604646314 8.24157779 8.3931322 8.87413685 8.966158408 8.416665623 8.269171662 8.566203718 154246440 NiR Nitrogen Assimilatory N reduction Xanthobacter autotrophicus Py2 8.691484933 8.690602303 8.106659347 7.911839992 7.982117379 7.987553833 8.370824065 8.524045797 8.316751456 8.299535629 8.384964825 220933627 CopA Metal Resistance Copper Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 9.306018105 9.401208189 9.491288513 9.02406007 9.125357682 8.887446379 9.239083755 9.727203748 9.225959661 9.536146573 9.35031898 9.459497624 272542845 sigma_70 Stress Sigma factors Burkholderia sp. CCGE1002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.044945363 8.374033415 8.333255114 9.035631935 8.711733867 8.79814393 8.270561978 8.82773722 8.548463813 8.571800528 8.731984037 8.332612425 209965307 ChrA Metal Resistance Chromium Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 9.941064244 9.931092495 9.982047526 9.221687873 9.197104731 9.245061102 9.215194612 9.170998793 9.144610781 9.248821669 9.082434889 9.555983235 118468011 xylC Organic Remediation Aromatics BTEX and related aromatics Mycobacterium smegmatis str. MC2 155 9.266270503 9.524711396 9.059744365 9.094811476 8.533536321 8.573135612 8.763621147 8.718552718 121227812 phn Organic Remediation Herbicides related compound Burkholderia mallei SAVP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia mallei; 9.991143123 9.807508849 10.11514289 8.913513351 8.831958017 9.026153042 9.352186205 8.706701201 9.582669339 9.554315566 9.63958018 9.625932236 19887184 aclB Carbon cycling Carbon fixation Methanopyrus kandleri AV19 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanopyri;order:Methanopyrales;family:Methanopyraceae;genus:Methanopyrus;species:Methanopyrus kandleri; 9.10231838 9.202266977 9.279757353 8.431564986 8.46324383 8.502713805 8.540797781 8.29851755 8.412975262 8.479992793 8.601718398 73696826 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.993679675 8.567787234 8.306006826 7.753017797 8.039081022 8.420613148 8.613561716 7.978227257 8.258216008 8.288292773 7.98513394 8.250619825 150387109 phoB Stress Phosphate limitation Victivallis vadensis ATCC BAA-548 superkingdom:Bacteria;phylum:Lentisphaerae;family:Victivallaceae;genus:Victivallis;species:Victivallis vadensis; 7.910225052 7.798074841 7.400995602 7.689675248 8.126056006 7.910559215 7.735909417 7.537740925 7.413300464 114540837 SMR_antibiotics Antibiotic resistance transporter Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 9.325078937 9.373386202 9.63724671 8.750058952 8.699322078 8.693335515 8.678730209 8.411707968 8.695412493 8.62026037 8.765139784 8.904771105 72384064 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.335044938 8.247637777 8.329490135 7.767931963 7.7695092 7.833856196 7.810556136 7.849067006 8.019653073 8.151648134 8.036906758 8.206807925 224522107 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Bacteroides cellulosilyticus DSM 14838 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 7.202446345 7.372657976 7.496830002 7.28900012 7.578796209 7.571299131 7.735758294 152978653 gyrB other category gyrB Actinobacillus succinogenes 130Z superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus succinogenes; 8.265194621 8.129647469 7.662721459 7.645256468 7.444274973 7.119032291 6.979151084 7.429855888 7.400258033 7.495936682 7.633773261 146305382 glnA Stress Nitrogen limitation Pseudomonas mendocina ymp 8.350843562 8.250103031 7.957037538 7.745472063 7.856044737 8.162328908 8.055412537 8.48536915 8.007490219 8.088323274 7.911942522 46203201 ZntA Metal Resistance Zinc Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 8.553853117 8.329178851 8.686939344 8.144625324 8.062115422 7.990716597 7.780752406 7.65135855 8.125687327 7.939288742 7.73416136 8.123180966 222111860 fnr Stress Oxygen stress Diaphorobacter sp. TPSY 8.417838794 8.302085502 7.831517178 8.037227991 8.217289927 7.709832214 7.816016424 8.377094539 7.989554144 8.002209504 7.670416577 198255066 xylA Carbon cycling Carbon degradation Hemicellulose Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 8.199773533 8.726309386 8.340427813 7.764671171 7.969513325 8.09549238 8.448120219 7.833482599 8.517804654 7.881627012 8.116512197 7.913153368 118060426 nitA Organic Remediation Aromatics Other aromatics Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 9.521468174 9.401746765 9.606052842 9.13193086 9.235120569 9.139121853 9.05112884 9.359305079 8.856670413 9.468664402 9.390223353 9.089813354 119671145 tomA Organic Remediation Aromatics BTEX and related aromatics Azoarcus sp. BH72 9.356388737 9.418448526 9.589127744 8.68201422 8.664112049 8.76190066 8.60627732 8.430540278 9.393114899 8.586693119 8.412344033 8.741845351 145214436 Catechol Organic Remediation Aromatics Other aromatics Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 9.821646206 9.655174801 9.791773263 9.199827356 9.0830562 8.965031248 9.276307121 9.142947909 9.342951429 9.030065999 9.303480293 9.251846428 2649598 trzN Organic Remediation Herbicides related compound Archaeoglobus fulgidus DSM 4304 8.637713314 8.239839754 8.859897814 8.035603214 7.881647555 7.929237067 7.310482569 7.193339359 8.062083211 8.052574976 7.945232879 8.006744935 218751054 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.90406038 8.293925485 8.232680185 7.436632318 7.57267861 7.943327339 7.921794198 7.276389881 7.571681328 7.22387882 7.360786752 7.13997143 117619171 B_lactamase_C Antibiotic resistance Beta-lactamases Aeromonas hydrophila subsp. hydrophila ATCC 7966 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas hydrophila; 8.595972655 8.530287403 8.278613334 8.110503824 8.242099178 8.422623122 8.64322668 8.537500833 8.541642135 8.364745843 8.746561766 8.250793734 221563818 cytochrome Energy process Energy process Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.158016731 8.337777124 8.115290758 7.956834118 7.948047198 7.420377307 7.999302667 7.953641315 7.746192391 7.859497701 7.986113764 116507551 ZntA Metal Resistance Zinc Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 8.775779155 8.443517048 8.250532214 8.06006897 8.062269368 7.858400228 8.1255787 8.066091619 8.407754378 8.17141484 8.274791915 163811600 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 10.65283642 10.54755511 10.40111732 9.869382513 9.611601803 9.987854314 9.90740593 10.0878131 10.12373035 9.844218419 124267078 AceA Carbon cycling Carbon degradation others Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 9.537375386 9.516648872 9.114828825 9.015488669 8.989339736 8.968990138 9.005878266 9.149090353 9.141402054 9.058477155 9.086587611 9.07171657 229749761 B_lactamase_C Antibiotic resistance Beta-lactamases Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 7.989258554 8.548302365 8.530851488 8.532965137 8.14378465 8.089951531 8.570839336 8.110704075 8.543918544 8.118639346 8.342993944 269788833 gyrB other category gyrB Thermobaculum terrenum ATCC BAA-798 superkingdom:Bacteria;genus:Thermobaculum;species:Thermobaculum terrenum; 9.355258957 9.257863875 9.440356803 8.605194713 8.629054582 8.47332579 8.311849589 8.282151444 8.407823018 8.610130161 8.683469383 8.839239879 71729244 atzA Organic Remediation Herbicides related compound Xylella fastidiosa Ann-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xylella;species:Xylella fastidiosa; 7.531473992 7.461948287 7.430929882 6.809143149 7.442905971 7.499934485 7.302550981 7.13588377 7.139773988 223470335 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.312851577 8.442447291 8.253405918 8.448630666 8.309685735 8.03744922 8.19843122 8.442700203 8.411837323 8.456082771 8.513590822 7.914704603 11078725 gyrB other category gyrB Pseudomonas pseudoalcaligenes superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.488814839 8.435102971 8.391306449 8.001113031 8.260989974 8.177448013 7.9859099 8.015918211 7.855278129 7.821354147 7.912258821 118590430 B_lactamase_A Antibiotic resistance Beta-lactamases Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 8.150708034 8.074265662 7.91044976 8.259000437 8.273362336 8.086059276 8.656074864 8.382963511 8.547399486 8.353602286 8.699038219 45272475 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.157213587 8.076451785 8.095162746 7.387319756 8.153182997 8.183625137 8.459642212 8.065752536 8.046533391 7.865444 8.045385472 7.879493979 87308751 ahpC Stress Oxygen stress Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 8.340797429 8.345776917 8.815787557 7.768777148 8.348304683 8.226475375 8.788565718 8.62126969 77996565 bphF1 Organic Remediation Aromatics Polycyclic aromatics Carboxydothermus hydrogenoformans Z-2901 8.557621219 8.292446183 8.154520901 8.305782034 8.131079765 8.260179177 8.341615862 7.95149262 8.428037971 7.924976298 7.946147154 7.923022104 269935517 hly virulence hemolysin Mobiluncus mulieris 28-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus mulieris; 8.488762045 8.961623944 9.00987526 8.177238726 8.511519884 8.137861731 8.958224837 8.393166819 89346908 ureC Nitrogen Ammonification Rhodoferax ferrireducens DSM 15236 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 9.954565458 9.907765633 10.004478 9.292150732 9.329926258 9.259829162 9.476422954 9.160473968 9.824070849 9.545988046 9.507064093 9.695737806 109660018 ureC Nitrogen Ammonification unidentified bacterial contaminant superkingdom:Bacteria; 9.888460882 9.847027534 9.674657401 8.608038571 8.775570375 8.920953131 124496695 pcc Carbon cycling Carbon fixation Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 7.472182964 7.20528406 171320783 chnB Organic Remediation Other Hydrocarbons Burkholderia ambifaria MEX-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 8.61958338 8.521438989 8.393880754 7.839952954 7.780514612 8.123481669 8.368201641 7.804943094 8.573745504 8.115609386 8.151953771 8.155696793 15899388 catB Organic Remediation Aromatics BTEX and related aromatics Sulfolobus solfataricus P2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus;species:Sulfolobus solfataricus; 8.703470977 8.594370011 8.779405694 8.201232008 8.296028352 8.201397355 7.827758429 7.918010365 8.214175198 8.101321085 8.266641865 8.363212414 85860184 fnr Stress Oxygen stress Syntrophus aciditrophicus SB 8.505185609 8.534765422 8.767113119 7.832097238 7.87134281 7.797007634 7.394042009 7.212807358 8.049868355 7.543205563 7.492042552 7.982063394 91786006 rubisco Carbon cycling Carbon fixation Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 8.174057261 8.168474654 8.303037397 7.533762427 7.466311067 7.801658656 8.067880065 7.713963304 7.486374146 7.220406298 7.502696392 52785978 trzN Organic Remediation Herbicides related compound Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 9.041286128 8.972139217 9.128816749 8.121314531 8.29281068 7.987103258 8.118249337 7.866062957 8.169716908 8.097380167 7.941852267 8.449742161 83836813 ArsC Metal Resistance Arsenic Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 8.025228659 8.191243211 7.705750459 8.052289367 7.952915869 8.049194121 7.781021061 8.217508928 7.790401733 7.899649811 7.939350176 238495620 MATE_antibiotic Antibiotic resistance transporter Aspergillus flavus NRRL3357 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus flavus; 8.39511925 8.245317145 8.205089415 8.274817732 8.37557136 7.810554081 7.900359587 8.102738779 8.168755876 8.003598963 7.784137072 7.842230367 3462873 fnr Stress Oxygen stress Rhizobium etli 8.494589683 8.365679693 8.453715825 7.89665513 7.690998915 7.932383764 8.213443096 7.911742059 8.542910056 7.893167829 8.055630475 7.996793968 167071478 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 9.00206678 9.038941738 9.499140232 8.835010474 8.873816049 8.765229013 8.705306627 9.28617913 8.794776395 9.295022508 9.084409298 9.290164162 67547414 ZntA Metal Resistance Zinc Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 9.104146322 9.298850205 9.265339012 8.960644168 8.953704491 8.718064303 8.69290397 8.978346591 9.100187396 9.338425185 9.414989417 8.979297637 255300099 iro virulence Campylobacter showae RM3277 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter showae; 9.49279842 9.452547734 9.698520829 8.949335909 8.851030869 8.734822722 9.123485646 9.117835328 8.863844125 9.024708298 9.043781096 9.181103841 71366857 amyA Carbon cycling Carbon degradation Starch Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.345045612 8.232869758 7.60697698 7.257706972 7.607153145 7.627243859 7.202664277 7.630189106 7.308659556 7.548465187 197210211 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.339048741 8.333815983 8.393670752 7.72931616 7.683722945 7.838652636 7.603971591 7.721329022 8.129347287 7.746978529 7.803942117 7.810173533 91787791 ophC Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 9.1782661 8.832991443 9.038400673 8.920048771 8.752813878 8.712325394 9.017285735 9.569110044 8.990176681 9.350399176 9.139983182 9.338192109 225020524 groEL Stress Heat shock Corynebacterium matruchotii ATCC 33806 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium matruchotii; 8.482328092 8.862040194 8.339009212 7.927496483 7.775107965 8.245383563 7.998886837 8.157240605 7.976494583 8.168683219 8.138670727 77543319 nahA Organic Remediation Aromatics Polycyclic aromatics Sphingomonas sp. AC3 9.85098419 9.880989108 9.001494039 8.684785009 8.762179007 190011210 sigma_24 Stress Sigma factors Stenotrophomonas maltophilia K279a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 8.720508615 8.704956717 8.77140234 8.316497063 8.065524712 8.145540054 8.470139776 7.955221656 8.768304212 8.135915485 8.481137719 8.239157307 119391435 narG Nitrogen Denitrification uncultured bacterium 8.966731183 9.094946494 8.994736212 8.533404932 8.655453453 8.825079053 8.700034315 8.909750084 8.780730935 8.680617288 9.106974277 8.648861325 25028861 benAB Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium efficiens YS-314 8.29416903 8.025859253 8.087332073 8.081235998 8.305445926 8.481382144 8.215159559 8.599418585 7.995862649 8.350825676 8.413781291 7.891335388 91692411 sigma_70 Stress Sigma factors Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.768166236 8.934765933 8.992394928 8.047594282 7.942078589 8.244458104 8.617289522 7.985044564 9.023898361 8.374319059 8.509981956 8.55260899 83589812 trzN Organic Remediation Herbicides related compound Moorella thermoacetica ATCC 39073 8.775391948 8.930229809 8.836006933 8.494414235 8.442985703 8.267203952 8.079168436 8.265395762 8.16198545 8.13617886 8.297598654 8.450197185 118750314 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Marinomonas sp. MWYL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 8.624730149 8.181753929 8.540160627 8.137036073 8.045192742 8.170883226 8.485436285 7.730336509 8.28915502 8.167167551 8.127178581 8.270007484 163758208 ureC Nitrogen Ammonification Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 7.59979463 7.840054141 8.049007612 7.881279545 7.841789897 7.912268474 8.049230331 7.911747813 223693684 ahpC Stress Oxygen stress Desulfobacterium autotrophicum HRM2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium;species:Desulfobacterium autotrophicum; 8.808771641 8.48666997 8.914407423 8.121510442 8.135148845 8.239451458 8.035981948 7.983716729 8.457538488 8.04783497 8.077843301 8.331266412 78521708 nosZ Nitrogen Denitrification Alkalilimnicola ehrlichei MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 8.340974078 7.82019129 8.001736181 7.865069154 8.167650556 7.633815632 7.841271844 155171 glnA Stress Nitrogen limitation 7.09094001 7.280720933 7.403906483 7.087853149 6.674034869 7.031634622 6.847900149 7.281898699 111610916 ureC Nitrogen Ammonification Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 8.497678046 8.766651822 8.662643335 8.207973209 8.417326853 8.868302975 8.991055421 8.563818046 8.911104418 8.706544796 8.578893704 8.807342891 115373925 linC Organic Remediation Pesticides related compound Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 8.801757242 8.726013331 8.888198769 8.229808217 8.145680536 8.213050468 7.933635003 7.777548213 8.415011953 7.799288233 7.716972382 8.256363395 220927201 CopA Metal Resistance Copper Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 8.838777367 8.786270001 8.722499321 8.458261917 8.312664537 7.899472182 8.448565245 8.418374066 8.684952748 8.496414002 8.62324687 8.298447369 187926784 akbF Organic Remediation Aromatics BTEX and related aromatics Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.253525989 8.475849121 8.305813222 8.13881463 8.074493037 7.962311249 8.083532156 8.321466994 8.275583706 8.329381105 8.164624776 8.280559005 148474814 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 9.074630854 8.801405307 8.557187122 8.658522297 8.75998816 8.779527306 8.654699778 8.813641576 8.984786386 9.120673958 9.526732532 9.346794968 116255137 nitA Organic Remediation Aromatics Other aromatics Rhizobium leguminosarum bv. viciae 3841 7.517320357 7.756932955 7.680099985 7.735267868 8.334967512 8.113304896 8.122906526 8.030393477 196114252 Catechol Organic Remediation Aromatics Other aromatics Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 8.625240534 8.782887932 9.061550472 8.229798789 8.204060897 8.105246491 7.577781615 7.640557056 7.959768984 8.105274017 8.156790107 187728536 ChrA Metal Resistance Chromium Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.276387181 8.363026676 8.142798266 7.856442832 8.064796765 7.844014447 8.050525668 8.411273936 8.183414194 8.146572907 7.853091846 8.029382908 124259631 merP Metal Resistance Mercury Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 9.100094878 9.087047954 8.865043529 8.639448363 8.278080766 8.626538825 8.576292507 8.566451239 8.691641543 8.880465715 9.032202376 8.79725773 118665715 nmoA Organic Remediation Aromatics Nitoaromatics Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.413612269 8.409912113 8.210079814 8.434870806 8.228319259 8.056052869 8.172919919 8.152447425 8.046775221 157848467 endochitinase Carbon cycling Carbon degradation Chitin Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 9.148606611 9.197881045 9.407876103 8.622380588 8.554031607 8.562723614 8.039782596 8.081946687 8.258630134 8.325555244 8.624966472 74136893 nahF Organic Remediation Aromatics Polycyclic aromatics Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 9.648120941 9.626508982 9.673842985 8.921153774 8.840536256 8.924325651 8.838625181 8.552597243 8.487008879 8.751871242 8.667094304 9.011739073 171990269 amyA Carbon cycling Carbon degradation Starch Exiguobacterium sibiricum 255-15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 8.810686869 8.557982348 8.791279315 8.096081252 8.183332624 8.205196787 8.046728112 7.713909262 8.160454952 7.962341267 7.894026085 8.238286943 148499903 CopA Metal Resistance Copper Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.371825849 8.330319779 8.40308169 7.768932809 7.647636698 7.874652411 7.750363632 7.242004204 7.869912385 7.690697677 7.715708419 8.158081023 72121822 iro virulence Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 9.369477248 9.5786818 9.243665205 8.95509635 9.331451721 9.044085581 9.833224044 9.57461629 9.377446619 9.291107867 9.553446638 9.209862347 167589250 MFS_antibiotic Antibiotic resistance transporter Burkholderia ubonensis Bu superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ubonensis; 8.419555254 8.615682766 8.60054172 8.675647518 8.525119055 8.546667019 8.935646861 8.42263554 8.788095118 8.620447024 8.568443058 94470925 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.051633394 8.126636559 7.470413724 7.344074823 73540805 TehB Metal Resistance Tellurium Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 9.232165461 9.332124707 9.551415031 8.769731163 8.823895208 8.819415495 8.527427574 8.729429206 8.579719622 8.877387164 8.849067534 9.0842967 505126 rubisco Carbon cycling Carbon fixation Hydrogenophilus thermoluteolus superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Hydrogenophilus; 8.611633662 8.876241793 8.179820369 7.990723771 8.112397039 7.935678899 7.803293696 8.268377264 7.980396784 7.966589179 8.104129622 149810275 ArsC Metal Resistance Arsenic Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 9.533124978 9.528783514 9.564221822 9.159115337 9.133607518 8.961815398 9.193032487 9.346467105 8.915483239 9.226767648 9.141614903 9.106875037 254559936 fnr Stress Oxygen stress Methylobacterium extorquens DM4 8.959786649 8.783421331 8.683459524 8.470244415 8.151052978 8.705829372 8.988551416 8.523148763 8.633481751 8.556263517 8.59700363 8.32683044 119697302 TerC Metal Resistance Tellurium Mycobacterium sp. KMS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.957084802 9.214967568 9.339368 8.800665048 8.830146737 8.749305286 8.417673801 8.60368243 8.403420166 8.728761154 8.658520169 8.858531529 254477331 AceB Carbon cycling Carbon degradation others Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8.079318095 8.249219504 7.500846422 7.673962687 7.397586381 7.404312194 7.278881229 7.477497114 7.711369066 7.506618083 126356156 CadA Metal Resistance Cadmium Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.328372708 8.312951437 8.616464701 8.282332469 7.816154855 8.407850229 8.744518203 8.549160196 8.475391474 8.997915277 9.137773495 8.677769225 148656833 glnA Stress Nitrogen limitation Roseiflexus sp. RS-1 9.347087276 9.084342425 9.465002872 9.277448046 8.867545622 8.996317806 8.714005817 9.078175701 8.580559121 8.860081497 8.950044454 9.340380223 210631412 pstB Stress Phosphate limitation Collinsella stercoris DSM 13279 8.26380199 8.329961337 8.03461379 7.913997568 8.100200427 7.902786696 7.757289822 7.832232582 7.882737245 6457793 grpE Stress Heat shock Deinococcus radiodurans R1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 8.260327099 8.106352468 8.23479408 8.864149735 8.972766035 8.810687767 8.37023719 9.110209463 8.337055696 8.745688141 8.444224097 8.838819797 13506822 pcpA Organic Remediation Aromatics Chlorinated aromatics Sphingomonas sp. UG30 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.12826942 8.546397314 7.926011068 7.70617444 7.820530987 7.968870101 8.132149143 8.209683506 8.063840518 8.239611718 83312466 dsrB Sulphur sulfite reductase Magnetospirillum magneticum AMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 8.332749883 8.426225393 8.423881285 8.317901202 8.245758194 7.918092561 7.92952486 8.246987586 8.396998604 8.465269587 8.216909655 8.254483513 269143440 SMR_antibiotics Antibiotic resistance transporter Brevundimonas subvibrioides ATCC 15264 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas;species:Brevundimonas subvibrioides; 9.180021512 9.239222225 9.397168667 8.747788764 8.702273942 8.683175942 8.671560313 8.685024355 8.642073207 8.728377294 8.600639816 8.932570276 219950047 fnr Stress Oxygen stress Methylobacterium nodulans ORS 2060 9.014916433 8.988218243 8.818909953 8.628840926 8.465048161 8.487383876 8.523158265 8.540603031 8.465394493 8.497257861 8.406778053 8.507258138 78363353 CadA Metal Resistance Cadmium Thiomicrospira crunogena XCL-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Thiomicrospira;species:Thiomicrospira crunogena; 8.194467042 8.179483467 8.495379459 7.916475889 7.893082913 7.568823478 7.0694781 6.957712433 7.642667928 7.389953727 7.246062457 7.824422502 77959771 tutFDG Organic Remediation Aromatics BTEX and related aromatics Yersinia bercovieri ATCC 43970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 8.288091486 8.14643824 7.332414207 6.997930583 6.733948839 7.40174316 6.994140782 6.794187824 74038472 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.538845718 8.296220372 8.513485239 8.243801334 8.161037 7.91263685 7.547908865 7.763288105 8.035208071 7.90525828 7.634736496 7.977922117 70993266 AceA Carbon cycling Carbon degradation others Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 8.828073173 8.977816147 9.129961709 8.899001814 8.9202016 8.724815335 21904543 srt virulence surface protein Streptococcus pyogenes MGAS315 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus pyogenes; 7.254048197 7.151062868 238709013 nplT Carbon cycling Carbon degradation Starch Yersinia rohdei ATCC 43380 7.493742669 7.421377383 7.274814607 7.25530083 7.299857419 7.512141177 7.431036105 7.398631108 7.56071186 187425286 obgE Stress Radiation stress Akkermansia muciniphila ATCC BAA-835 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Akkermansia;species:Akkermansia muciniphila; 9.319293243 9.095928009 9.296036236 8.397624344 8.71706056 8.495366838 8.596474821 8.263890833 8.390861519 8.420941656 8.673813063 126464350 iro virulence Rhodobacter sphaeroides ATCC 17029 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 9.438858068 9.38700332 9.315487348 8.781069421 8.6074046 8.700050994 8.798065722 8.352705143 8.893506799 8.661932443 8.581263389 8.912101549 220914339 amyA Carbon cycling Carbon degradation Starch Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 9.213557533 9.285527441 9.191829439 9.463639219 9.261226871 8.989473813 9.564067238 9.296092384 8.813952704 9.264303426 9.503797999 9.22999889 118438482 pimF Organic Remediation Aromatics Aromatic carboxylic acid Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 8.116021531 8.118379486 7.526870337 7.603479424 7.821982729 7.781939898 7.745566644 8.325353612 7.750988189 7.796229113 7.570167403 17431383 nagG Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 9.100509145 9.059461123 9.187762286 8.559236325 8.097523871 8.648158949 8.714938974 8.595297666 8.491217157 8.489181623 8.488513605 8.720361726 148568682 CopA Metal Resistance Copper Roseiflexus sp. RS-1 10.08732936 9.745554235 9.493478674 10.01909653 10.04776981 9.577736098 115519070 phn Organic Remediation Herbicides related compound Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.011590007 7.929805126 6.902294329 6.952612078 193222324 CopA Metal Resistance Copper Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 8.569950203 8.42695034 8.479076001 7.823041105 7.909037031 8.128263294 8.224644585 7.707580441 8.355209121 7.928408356 8.138525632 7.998469117 126718802 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.740815254 8.617016653 8.684122946 8.287323765 8.022653142 7.741341209 8.035224769 8.214153423 8.142765114 8.183992212 8.396571922 167367096 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.133822205 8.019801959 6.90804333 7.510899257 7.338913223 7.911372451 219993321 gyrB other category gyrB Halothermothrix orenii H 168 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Halanaerobiales;family:Halanaerobiaceae;genus:Halothermothrix;species:Halothermothrix orenii; 9.434778657 9.404415828 9.551500077 8.962577429 8.825127042 8.86115768 8.967730034 8.756185681 8.701535471 8.616992074 8.700837055 9.12220525 139003254 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.143024195 8.204356504 7.440013466 7.471024676 7.777001022 6.944281927 7.003338303 7.148723984 7.179343112 158316549 CDH Carbon cycling Carbon degradation Cellulose Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 9.046843123 9.144255482 9.109140059 8.688069955 8.523435066 8.927121777 9.168837666 8.599622182 8.947504086 8.650816999 8.750266659 8.986590075 89353179 ChrA Metal Resistance Chromium Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.087044193 8.231432157 7.381818135 7.987062096 8.04109863 8.00938532 6.779941644 8.376930022 7.361965013 7.4548224 7.70648951 83756978 oxyR Stress Oxygen stress Salinibacter ruber DSM 13855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 8.687777057 8.836789468 8.55265908 8.537228418 8.509204833 8.43684698 8.490225674 8.55227635 8.450362154 8.618918189 8.474459784 8.61887498 158447998 hrcA Stress Heat shock Coprococcus eutactus ATCC 27759 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Coprococcus;species:Coprococcus eutactus; 8.675950649 8.845590468 8.90310935 8.068938939 7.705367335 8.100463058 7.990419301 7.73127529 7.763025347 7.732309362 8.16160403 241878226 type_III_secretion virulence secretion Desulfovibrio vulgaris RCH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 9.440998123 9.386691828 9.541515297 9.567970815 9.613889914 9.281169604 9.449712444 9.734582164 9.432526191 9.522604196 9.424708478 9.68018099 6900458 iro virulence Neisseria meningitidis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria; 9.591312663 8.979300582 9.068590392 9.685564347 9.570605419 9.513725126 9.49486463 9.600557659 9.207381348 9.607489268 9.630045667 9.409296668 255059844 cytochrome Energy process Energy process Geobacter sp. M18 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.854041359 8.739861007 8.802641653 8.019633833 8.026243631 8.213795677 7.580453609 7.535962191 8.283419353 7.795637218 7.801140955 8.122301882 153007680 ureC Nitrogen Ammonification Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 8.467227331 8.537536636 8.37459803 8.480269666 8.372329914 8.165956059 8.662433282 8.142175182 8.307067172 8.314925572 8.115375421 8.205026181 77543329 bphA Organic Remediation Aromatics Polycyclic aromatics Terrabacter sp. HF 9.674926817 9.216513216 9.713104291 8.427037443 8.483997824 8.675564605 8.617446377 8.405743294 8.551121119 8.598174895 8.490041042 8.609514899 104779392 cytochrome Energy process Energy process Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 8.288409125 8.169144753 7.679869732 7.84974689 8.055374085 8.146223878 7.682660207 8.23464817 7.911425996 8.004185146 7.948864117 69936847 ureC Nitrogen Ammonification Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.168533812 8.052072712 8.45819748 7.916263701 7.891052891 7.902940962 8.038293814 8.550156792 8.241967274 8.530803554 8.499192111 8.529824067 149828 cellobiase Carbon cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Thermobispora; 7.918622979 8.022270097 7.986337655 7.454263577 8.142415814 7.918294418 7.972675679 7.928158218 7.95983943 56964777 catB Organic Remediation Aromatics BTEX and related aromatics Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 8.409379356 8.259868857 8.477772522 7.936720256 7.973137864 7.669418507 7.417699106 7.755165264 8.056592827 7.978307685 8.194390217 8.298549242 120588491 gyrB other category gyrB Acidovorax avenae subsp. citrulli AAC00-1 9.83460162 9.955551765 9.367958603 9.334103445 9.347696232 9.626163954 9.969881682 9.507145625 9.550194396 9.50106687 9.691139385 9.399467717 170744186 fnr Stress Oxygen stress Methylobacterium sp. 4-46 8.501727582 8.384565485 8.481951349 7.709338426 7.701077489 8.021588974 7.842076225 7.695128204 8.328822444 7.660345396 7.766853186 7.870390188 85669952 ureC Nitrogen Ammonification Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 9.411381016 9.031568406 9.467595777 8.782860619 8.946661897 8.888912098 9.012832983 9.39143434 8.69911322 9.259523752 9.367239366 8.664561354 148570406 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 10.16260073 9.989456116 9.94483643 9.478108661 9.564103283 9.260851635 9.965583026 9.241222507 146402860 acetyl_CoA_carboxylase Bioleaching Carbon fixation Acidiphilium cryptum JF-5 8.390604148 8.318175526 8.447349971 8.209744784 8.035659154 7.866513558 8.256676453 8.324781306 8.122756359 8.095968543 8.406361528 187920098 alkB Organic Remediation Other Hydrocarbons Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8.225310295 8.149029838 8.251126579 7.253096627 7.252424913 7.523251748 7.822045087 7.567441126 7.904614854 7.653970762 7.633127129 7.695291176 158337702 sigma_70 Stress Sigma factors Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;genus:Acaryochloris;species:Acaryochloris marina; 8.397471525 8.592043662 8.382869208 8.166331446 8.323135137 8.148699528 7.9931454 8.420513691 8.255747638 8.231124836 8.086979493 8.414514355 116754298 atzA Organic Remediation Herbicides related compound Methanosaeta thermophila PT 8.858552458 8.911115988 8.964834129 8.233700549 7.847138738 7.928057081 7.702467749 7.69001758 7.752811695 7.931281558 8.406334576 111282116 CopA Metal Resistance Copper Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 8.176801974 8.774774602 7.599828024 8.267855139 8.294609824 8.608742661 7.44871909 8.691020673 7.845026572 7.597680383 8.016807012 119383921 Catechol Organic Remediation Aromatics Other aromatics Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.485576747 8.734248131 8.68648676 7.869605591 8.351745255 8.823387684 8.85286014 8.40866758 9.005866567 8.471355032 8.216606135 8.375425709 1685013 bphA Organic Remediation Aromatics Polycyclic aromatics 8.27127115 8.476651544 8.493573522 7.64688097 7.644894165 8.015968121 8.062182757 7.879641594 8.077081469 7.877646426 8.098102576 8.266164436 206677518 rd Organic Remediation Chlorinated solvents Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.138364611 8.927588772 8.91121387 8.095798101 8.474955591 9.029315213 8.838866083 9.02006576 8.729374046 8.999934192 72395058 nifH Nitrogen Nitrogen fixation Methanosarcina barkeri str. fusaro superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina barkeri; 8.305990101 8.035596398 8.285189109 7.299767636 7.20680114 7.390469193 7.187804992 6.785172054 7.907951087 7.20717732 7.417447224 7.525763427 178465499 CopA Metal Resistance Copper Streptomyces griseus subsp. griseus NBRC 13350 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 9.243132648 9.26047311 9.129872308 9.306840306 9.244748112 9.443518345 9.537140087 9.294898375 9.125327287 9.353767298 9.216842554 114704720 gyrB other category gyrB Fulvimarina pelagi HTCC2506 8.494848067 8.829918847 8.689845044 8.287823213 8.546864987 8.721745988 8.958832242 8.173387043 8.460761734 8.530465612 8.668091104 54023783 pulA Carbon cycling Carbon degradation Starch Nocardia farcinica IFM 10152 8.616807094 8.664600739 8.340654223 8.442608122 8.058309032 8.040739914 8.204028601 7.82378099 8.67441238 7.928339673 8.147380705 7.974391659 76057489 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.127407062 8.539515464 7.97194783 7.784502064 7.734167533 7.574541708 8.008431607 8.20336672 7.884582352 8.024394163 108764301 Catechol Organic Remediation Aromatics Other aromatics Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 8.854830304 8.866028474 8.314726148 7.984704716 8.371064616 8.452280202 8.348053178 8.306234447 8.454855469 8.408953835 227498029 narI Stress Oxygen limitation Actinomyces urogenitalis DSM 15434 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces urogenitalis; 8.920863169 8.706456391 8.660479786 8.322946932 8.182671348 8.263907571 7.974108364 8.129382508 8.32429295 8.488021124 8.70418136 1066147 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 9.137908948 9.205242522 9.01424067 8.849782733 8.965115643 8.928975435 8.584530896 9.37494046 8.365654901 9.132427312 9.194615022 9.258833385 119450881 sox Sulphur Sulphur oxidation marine gamma proteobacterium HTCC2143 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 9.280566114 9.115210271 9.593605271 9.039025241 8.973306572 8.760155625 8.70484113 8.782373595 8.578001556 8.858405826 8.926165435 9.073500191 126740332 AceB Carbon cycling Carbon degradation others Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.762090774 8.765529764 8.784470153 8.419999731 8.590363725 8.455304626 8.63227421 8.541949839 8.392185489 8.651443326 8.354156729 220924464 fnr Stress Oxygen stress Methylobacterium nodulans ORS 2060 9.026085358 8.795069604 8.840844128 9.106244277 9.156757152 8.86385166 8.574806825 8.901685325 8.696417361 8.876455929 9.010564643 8.91791986 75702999 fnr Stress Oxygen stress Anabaena variabilis ATCC 29413 8.47500868 8.620288776 8.721470913 8.278221239 8.032641732 8.007574075 8.210538954 8.159837223 8.238088674 8.099878977 7.910415518 8.15620706 256832874 obgE Stress Radiation stress Jonesia denitrificans DSM 20603 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 8.351598602 8.385055808 7.964898914 8.182213931 8.136943749 7.872244178 8.340997838 8.17010625 8.198151311 7.819250053 8.104702042 194419024 CopA Metal Resistance Copper Shigella dysenteriae 1012 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Shigella;species:Shigella dysenteriae; 8.105125048 8.119451582 8.531334096 8.37655598 8.218483106 7.976030297 7.999829116 8.335141749 8.162245872 8.39353735 8.38604273 8.404700398 163785678 ppx Phosphorus Phosphorus utilization Hydrogenivirga sp. 128-5-R1-1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenivirga; 8.801947297 8.818071835 8.800375764 8.434939369 8.052014984 8.002430278 7.526493924 7.777475233 8.446151995 156743418 glnA Stress Nitrogen limitation Roseiflexus castenholzii DSM 13941 9.008560553 9.128893202 8.945901855 8.31592253 8.767188457 9.14852568 9.463564619 8.675809803 9.454717995 8.733609195 8.748668422 8.639812563 15623214 linB Organic Remediation Pesticides related compound Sulfolobus tokodaii str. 7 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus;species:Sulfolobus tokodaii; 8.628841264 8.493570362 8.193104273 7.926090913 7.991359886 8.147593794 7.468704459 8.05934561 7.946111866 7.762442611 7.950211851 7.558699066 68304952 narI Stress Oxygen limitation uncultured bacterium BAC13K9BAC superkingdom:Bacteria; 8.131154234 8.479812824 8.375045069 7.719628733 7.931431196 7.644529735 7.463454706 8.228323575 8.066888915 8.169986196 8.268979 440136 dehH109 Organic Remediation Chlorinated solvents Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.734996354 9.088537263 8.722949364 8.774633887 9.161959176 8.912865581 8.959295501 9.345881805 9.004461878 9.463003887 9.654673918 9.591811876 260861505 nplT Carbon cycling Carbon degradation Starch Selenomonas sputigena ATCC 35185 8.121073712 8.49619829 8.071909013 7.951041931 8.37620609 8.204880354 8.180831638 8.266238676 8.272508226 88807101 CopA Metal Resistance Copper Synechococcus sp. WH 7805 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 9.121998446 9.100270772 9.174114276 8.580016316 8.634185432 8.585621278 8.411720584 8.347066617 8.582958481 8.410716834 8.579818006 8.869617271 170134496 akbF Organic Remediation Aromatics BTEX and related aromatics Burkholderia ambifaria IOP40-10 8.521332047 8.499660498 8.743618766 7.832870916 8.023906007 8.006758182 7.998291726 7.474472483 8.329988979 7.862971809 7.930009374 8.10869824 146401540 drug_resistance_transporter Bioleaching Antibiotic Resistance Acidiphilium cryptum JF-5 8.461718921 8.511907213 8.799934397 7.977819039 8.104677423 7.898898179 8.079125063 7.85624578 8.5331795 7.969479023 7.660423329 8.265024676 148259523 NDEDFP_EPS Bioleaching EPS Acidiphilium cryptum JF-5 8.628561113 8.40476596 8.459622821 8.635247614 8.493793507 8.099676651 8.413989991 8.32149055 8.369043953 8.322977715 8.075357513 8.047399063 15966647 xylA Carbon cycling Carbon degradation Hemicellulose Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 9.269047758 8.866347808 8.8569891 8.953731753 8.865797502 8.836271371 8.484087405 8.3507955 8.327023545 8.324932424 8.603869437 116624210 dehH109 Organic Remediation Chlorinated solvents Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 8.475091037 8.350637244 8.369772441 8.104422048 7.936651298 7.999871052 7.843834367 7.895339909 8.113694036 7.897335292 7.652254814 7.95505532 77862472 mcrA Carbon cycling Methane Methane production uncultured archaeon superkingdom:Archaea; 7.805038121 7.815734457 7.745562145 7.670018445 7.8699482 8.166304722 7.830297469 7.427819459 8.100922715 170745152 nmoA Organic Remediation Aromatics Nitoaromatics Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 8.558250393 8.459384326 8.323150107 7.789835131 7.885654458 8.029395812 8.563017264 8.129488323 8.484183402 7.958686541 8.207160134 7.950794881 148501152 nahA Organic Remediation Aromatics Polycyclic aromatics Sphingomonas wittichii RW1 9.21740258 9.224262492 9.27135254 8.611726743 8.580841058 8.480264701 8.76991588 9.009831057 8.660217983 8.935038566 8.907114109 9.018383481 94423311 obgE Stress Radiation stress Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.958563589 8.528184546 8.508712857 7.600657427 8.340845574 8.417214379 8.795913959 7.65021617 8.592960554 8.157879383 8.302000223 93357836 Catechol Organic Remediation Aromatics Other aromatics Ralstonia metallidurans CH34 8.87365801 8.68063388 8.671144938 8.120235192 8.369933535 8.535779428 8.677207699 7.540081918 8.795311498 8.145402041 8.009937254 8.248297865 158107597 fnr Stress Oxygen stress Frankia sp. EAN1pec 8.745928653 8.556183946 8.6828376 8.283374207 8.217690069 8.113502478 8.345301127 8.414347548 8.46471857 8.736231186 8.504096676 8.567859957 258603022 oxyR Stress Oxygen stress Corynebacterium jeikeium ATCC 43734 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 10.20342179 9.612877771 9.864470669 9.907462509 10.05599478 9.920580052 10.0497872 10.12297909 9.394396527 9.939208412 9.893302248 9.824804082 157914836 pstB Stress Phosphate limitation Salinispora arenicola CNS-205 8.735351892 8.764976175 8.690469568 9.118714209 8.87245732 8.657241297 196202912 pstB Stress Phosphate limitation Cyanothece sp. PCC 7822 7.012919826 7.09504232 4808507 pchCF Organic Remediation Aromatics BTEX and related aromatics Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.816088593 8.842735339 8.457103036 8.685267705 8.2739808 8.478257895 8.149748465 8.756626479 8.531327633 8.663846055 8.274403823 77995775 nifH Nitrogen Nitrogen fixation Carboxydothermus hydrogenoformans Z-2901 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Carboxydothermus;species:Carboxydothermus hydrogenoformans; 8.594680193 8.534519749 8.616681308 8.091419236 7.7632532 7.786455402 7.545725905 7.187183901 7.815357814 7.90973762 8.124432742 86558602 pbrT Metal Resistance Lead Synechococcus sp. JA-2-3B'a(2-13) superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.530536344 8.454511683 8.666629703 8.299464163 8.228527177 8.129718438 8.069237869 8.617442345 8.648924956 8.706077349 8.747716382 8.529923235 83573380 dsrA Sulphur sulfite reductase Moorella thermoacetica ATCC 39073 8.469007471 8.3934329 8.576598468 8.091473884 7.779855943 7.78264936 8.045647678 7.868027547 8.253125279 7.794766515 7.743630738 7.945834848 118168293 catechol_B Organic Remediation Aromatics Other aromatics Mycobacterium avium 104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 9.272247845 8.988728545 9.053939889 8.540730476 8.577197027 8.610568725 9.07024603 8.867291811 8.808402315 8.5671305 8.927438952 8.956029607 42558556 ZntA Metal Resistance Zinc Acidovorax sp. B0447 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 9.89878292 9.965285356 9.741820402 9.111306481 8.827630864 9.293148931 9.938428776 9.405525601 9.353852584 8.862044717 9.20030336 9.20543565 28542639 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.159135587 8.195045736 8.154805374 7.518972712 7.538664085 7.606573281 7.585620332 7.478223734 7.670365474 7.381021871 7.701702259 46850250 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.138057325 7.945219423 7.282145672 7.816371722 8.059034407 8.432823925 7.946221237 7.749123807 7.915676081 218264995 pcc Carbon cycling Carbon fixation Parabacteroides johnsonii DSM 18315 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides johnsonii; 9.250816449 9.315729226 9.43171704 8.818190208 8.181325872 8.630002471 8.138643585 8.574281983 227489557 pcc Carbon cycling Carbon fixation Corynebacterium pseudogenitalium ATCC 33035 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium pseudogenitalium; 8.191311152 8.498284049 7.939624173 7.61506844 7.891717314 8.113679333 7.792434259 8.0408303 7.84356011 7.805439518 7.75088214 83369490 amyA Carbon cycling Carbon degradation Starch Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 8.999203908 8.844407498 8.818690294 8.79062821 8.907220199 8.893337042 8.89413544 8.965936064 8.775363803 8.836887357 8.960770779 8.875445157 31620028 alkB Organic Remediation Other Hydrocarbons Mycobacterium bovis AF2122/97 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium bovis; 9.645939889 9.745150604 9.586177807 9.346949755 9.1459914 9.442458696 9.804889395 9.449499323 9.985384551 9.176103472 8.999201472 9.079539802 222480280 CopA Metal Resistance Copper Halorubrum lacusprofundi ATCC 49239 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 8.672427994 8.65643383 8.99988105 9.052407807 8.96525753 8.692906929 9.092935464 9.397673932 9.03498221 9.124200719 8.823828454 8.989074001 154352008 Al Metal Resistance Aluminum Bacillus amyloliquefaciens FZB42 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 8.51260555 8.1620478 8.35584291 8.227923453 7.918257124 7.785689392 8.142258598 7.962444373 8.119506244 7.980209258 7.804972388 7.958381526 78044665 APS_AprA Sulphur adenylylsulfate reductase Carboxydothermus hydrogenoformans Z-2901 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Carboxydothermus;species:Carboxydothermus hydrogenoformans; 8.340957509 8.173584641 7.842937263 7.424307073 7.204280379 7.117928197 7.543653237 7.447505256 7.352664365 145235563 pcpE Organic Remediation Herbicides related compound Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8.279886872 8.189106908 8.181054564 7.388065808 7.587675075 7.860214663 8.043133732 7.171100592 8.211711865 7.332313569 7.683255954 7.341519952 158109431 alkB Organic Remediation Other Hydrocarbons Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.566679298 8.838079525 8.489451568 8.162253053 8.083929769 8.091133495 8.788610512 8.236195702 8.867888508 8.1422695 8.322264199 8.032922826 87301512 mer Metal Resistance Mercury Synechococcus sp. WH 5701 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.298236309 8.198025184 8.07737985 7.762467653 7.735936378 7.574180245 7.907418274 7.611082811 7.985848795 7.792238513 8.023219394 7.804299447 78223264 pimF Organic Remediation Aromatics Aromatic carboxylic acid Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 8.960159366 8.874761268 9.131531657 8.510329388 8.331544543 8.339284207 8.062017628 8.086117231 8.59227733 8.002818077 8.077447855 8.453722243 187484397 amyA Carbon cycling Carbon degradation Starch Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 8.173845817 8.236490589 8.113771636 7.367428371 7.628745802 7.295889119 7.337145447 7.389671744 7.338903915 7.25068064 7.619867033 4321267 silC Metal Resistance Silver Pseudomonas stutzeri superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 9.185969367 8.702183697 8.871668726 8.247736016 8.368849781 8.537634897 8.707721932 8.596963271 8.817852706 8.840776233 8.871972589 8.8450304 110639751 nbaC Organic Remediation Aromatics Nitoaromatics Cytophaga hutchinsonii ATCC 33406 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Cytophaga;species:Cytophaga hutchinsonii; 8.902728865 8.812364406 9.033465503 8.570296826 8.542728368 8.526570959 8.57936419 8.366314932 8.567752204 8.533008414 8.498868061 8.606861097 559906 AceA Carbon cycling Carbon degradation others Mycobacterium leprae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.098054381 7.874894357 8.160608039 8.013488543 8.168855799 7.93559867 8.007676192 8.527185972 8.460522021 8.351475519 8.194159706 8.312516238 158315414 atzA Organic Remediation Herbicides related compound Frankia sp. EAN1pec 8.214628937 7.941107863 7.669297657 8.020088277 7.810657389 7.666201894 8.294811996 8.550068583 8.209115619 121307852 sigma_24 Stress Sigma factors Thermosinus carboxydivorans Nor1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Thermosinus;species:Thermosinus carboxydivorans; 9.213077332 9.048714152 9.433167142 8.53122066 8.592193812 8.446673496 8.065146666 8.520208226 8.447534045 8.328375992 8.660193454 213014869 amyA Carbon cycling Carbon degradation Starch Thermotogales bacterium TBF 19.5.1 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Kosmotoga;species:Kosmotoga olearia; 8.22785483 8.414449409 8.858743537 8.221241111 7.927256725 8.129837575 7.804828049 7.58005044 8.249054974 7.955962834 7.894109078 8.072974619 219862122 mer Metal Resistance Mercury Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 8.783564447 8.499808329 8.586649607 8.667305137 8.524827642 8.269700344 8.685846696 8.591574108 8.907909168 8.225861011 8.491138898 84320843 nagI Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas aeruginosa C3719 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.358414307 8.688748584 8.386047388 8.341970709 8.940374533 8.552111189 8.208548563 8.297422631 8.115964593 262173223 hly virulence hemolysin Vibrio mimicus MB-451 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 7.508711872 7.669936239 7.722391005 6.973047681 8.004646286 223414526 mer Metal Resistance Mercury bacterium enrichment culture clone 23Bj3P3 8.017216256 8.02049978 7.181620021 7.135024991 7.158277254 152975974 gyrB other category gyrB Bacillus cereus subsp. cytotoxis NVH 391-98 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cytotoxicus; 8.131467777 8.132695097 7.220680724 7.039873717 7.275295011 6.578257376 7.347316753 6.967270827 6.83678178 7.380428085 224370867 proW Stress Osmotic stress Desulfobacterium autotrophicum HRM2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium;species:Desulfobacterium autotrophicum; 9.222965197 8.91166718 9.388711966 8.678212207 8.688847451 8.500994774 8.187507079 8.410565084 8.605014296 8.687373788 8.787825049 32895240 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.254286259 8.079235076 7.172938051 7.196218504 7.244811283 6.664356466 7.523986016 7.20178443 7.078458506 7.182720152 186476427 fnr Stress Oxygen stress Burkholderia phymatum STM815 8.362855728 7.824750624 8.232502299 8.026051569 8.153243328 7.8351591 8.251082883 7.911462988 8.204856031 8.410377424 7.725688339 163662725 trzE Organic Remediation Herbicides related compound Methylobacterium extorquens PA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 8.458668031 8.773974753 8.65960018 8.258481186 8.705959132 8.775562569 9.277875834 8.068538928 9.367157996 8.434646756 8.47418802 8.489134335 119459513 bphA Organic Remediation Aromatics Polycyclic aromatics marine gamma proteobacterium HTCC2080 8.40701527 8.160596291 8.336422966 8.037001705 8.258567433 7.9686884 7.86969233 8.118482338 7.887169506 7.772834352 8.476270179 53720647 alkK Organic Remediation Others Burkholderia pseudomallei K96243 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 8.037625809 7.865163364 7.900242355 7.187901218 7.212601249 7.256242199 6.959112141 7.806431556 7.123224185 7.11479604 241518329 sigma_24 Stress Sigma factors Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.298220223 8.565107477 8.320435892 8.08441792 8.618069822 8.222397039 8.607967281 8.606092837 8.641377797 150395535 AceA Carbon cycling Carbon degradation others Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 8.592815217 8.518454031 8.391830258 7.762881954 7.936255844 8.158946675 8.865529066 7.014432854 8.743851233 8.720790366 211905647 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.528344696 8.606746376 8.02762861 7.457556473 7.924166753 8.297083352 7.918271787 8.468688229 7.660463276 7.952625542 7.700001358 116200838 nagG Organic Remediation Aromatics Aromatic carboxylic acid Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 10.07785559 10.02474894 9.755732797 10.19065745 9.971555048 10.15228512 10.47065777 10.22928331 9.999917164 9.639666997 9.898373401 9.86363988 151358911 fnr Stress Oxygen stress Kineococcus radiotolerans SRS30216 9.367131082 9.297392727 9.09799688 9.097465434 8.767079422 9.006337365 9.086752891 8.915832891 9.189476488 9.151206387 9.157050607 9.267984244 260778763 iro virulence Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 8.693783818 8.246876619 8.92047205 8.458415349 8.30024932 7.785183633 7.1075841 6.847461622 7.955253564 8.06492895 8.015821805 7.963591485 163846446 CopA Metal Resistance Copper Chloroflexus aurantiacus J-10-fl 8.164991762 8.343355938 8.43624778 8.029117453 8.076445339 7.866968596 7.974144117 8.383648142 8.143708473 8.24859368 7.9840309 8.220583453 163847633 hrcA Stress Heat shock Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 7.962093604 8.347295307 7.47016667 7.606228296 7.527404692 7.527481274 7.298488247 7.854634125 7.638582913 7.198701528 7.397214234 157411558 napA Nitrogen Dissimilatory N reduction uncultured prokaryote 8.553297331 7.979469464 7.16731977 7.150254387 7.200816199 7.103315453 7.086383456 7.69395623 7.444890572 7.241729638 6.919216466 209907898 dmsA Organic Remediation Others Enterobacter cancerogenus ATCC 35316 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 9.365942419 9.049269941 9.135982425 8.496032349 8.2513479 8.578080511 8.293626093 8.808252848 8.595430828 8.80242542 44805036 Van Antibiotic resistance other Clostridium innocuum superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichi;order:Erysipelotrichales;family:Erysipelotrichaceae; 7.286872014 7.144904006 7.063427925 2196816 gyrB other category gyrB Shewanella putrefaciens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 8.627109721 8.763524849 8.879072152 8.56372689 8.39856448 8.222878514 8.29816766 8.286461242 8.153231114 8.266924751 8.037956612 8.295713405 115390953 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 8.27111968 7.859714568 8.579439576 7.009447924 7.213325145 7.441101675 6.983535206 6.975825213 7.733229661 7.066249323 7.166438041 7.364470968 197785824 cpnA Organic Remediation Other Hydrocarbons Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 9.283795654 8.922285657 8.815622307 9.380765079 9.329938469 9.105580487 8.977939171 9.413260119 8.92878211 9.15673548 9.328316102 8.996903337 121621831 DNA_polymerase_type_I Bacteria phage REPLICATION Erwinia amylovora phage Era103 order:Caudovirales;family:Podoviridae;genus:SP6-like viruses; 9.020430565 8.935900107 8.651468364 7.850389303 7.739063744 7.730196134 7.866033562 7.972266954 8.00742081 8.011667153 8.241617302 51451372 arsB Metal Resistance Arsenic Pseudomonas stutzeri superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 9.220166253 9.435364315 9.451962432 8.490674816 8.645642689 8.73257947 8.88641566 8.391535771 8.868674091 8.476225188 8.308085895 8.729049993 149815633 vanA Carbon cycling Carbon degradation Others Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 8.357377339 8.265559502 7.541885459 7.763877844 7.791717583 8.199564628 7.777335211 7.811982195 7.602718658 170061235 cpnA Organic Remediation Other Hydrocarbons Culex quinquefasciatus superkingdom:Eukaryota;kingdom:Metazoa;phylum:Arthropoda;class:Insecta;order:Diptera;family:Culicidae;genus:Culex; 8.769449308 8.410984068 9.052453309 8.231309797 7.696321191 7.962983015 8.002057695 7.726029208 8.115009545 7.984314236 7.878722725 8.244959177 119377455 sox Sulphur Sulphur oxidation Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.580055089 8.742884827 8.289352255 8.637028237 8.552944655 8.25263213 8.820091868 8.566231554 8.37807276 8.728624209 8.778935464 8.243071016 28898442 type_III_secretion virulence secretion Vibrio parahaemolyticus RIMD 2210633 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.499194694 7.580221564 7.466663745 7.493663297 7.278441383 7.729435334 7.399638994 7.140637485 7.284059209 219952231 nitA Organic Remediation Aromatics Other aromatics Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 8.562590691 8.396978544 8.339157084 7.71134588 7.682520741 7.639407599 7.816076813 7.940634986 8.323806563 7.584922575 8.072171244 7.927856472 42524592 B_lactamase Antibiotic resistance Beta-lactamases Bdellovibrio bacteriovorus HD100 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 8.50315387 8.330726952 8.328233447 8.121012255 8.039525806 7.840837313 7.993481612 8.094420569 8.413022869 8.263727245 8.445752603 193222323 CopA Metal Resistance Copper Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 8.717062174 8.008725636 8.453988903 8.085658828 7.421670678 8.287089367 8.197522971 8.677782686 7.950757577 8.018884843 148628249 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 9.024089841 8.928386283 9.164184164 9.201442735 9.155440273 9.062810487 9.087460796 9.36273437 9.196525272 9.197193709 9.202825146 9.407735015 148263597 CopA Metal Resistance Copper Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 9.294192032 9.44743296 9.462040911 8.910581594 8.988316683 8.994051414 9.187399802 9.121986221 8.93939703 9.123507014 9.224499704 9.217344416 256691432 pstA Stress Phosphate limitation Halorhabdus utahensis DSM 12940 8.508360966 8.53830435 8.110642501 7.872204092 7.7469378 7.890671454 8.040460709 7.741253322 8.006059765 7.854461358 7.654394197 146304360 ferredoxin_oxidoreductase Bioleaching Electron transport Metallosphaera sedula DSM 5348 8.40685216 8.484368548 8.740495976 7.934122513 7.893420437 7.939042666 7.512707139 7.512530493 8.046168392 7.857234767 7.785648215 7.910521969 161380031 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 8.968638276 9.276875801 9.008609364 9.279488445 9.664158947 9.150561437 9.44962849 9.389090615 9.183095218 83590789 atzA Organic Remediation Herbicides related compound Moorella thermoacetica ATCC 39073 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Moorella;species:Moorella thermoacetica; 9.399539006 9.476222599 9.384198422 9.290175229 9.34911851 9.410522555 9.317467405 9.560678326 9.292465793 9.32224596 9.3480626 9.513349692 163743362 ureC Nitrogen Ammonification Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 11.02772959 11.01244074 10.90042536 10.5751293 10.44239238 10.52646645 10.48257606 10.45522704 10.6583004 10.86915022 10.89366488 10.75478771 60476002 rubisco Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 9.264664028 9.342008666 9.245653984 9.082810202 9.071167044 8.858600376 9.140496136 9.563622053 9.407720668 9.414788153 9.170013757 9.259014865 170078130 obgE Stress Radiation stress Synechococcus sp. PCC 7002 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.962253588 8.857252432 8.708160952 8.549351566 8.295555416 8.221516468 8.634199294 8.193915532 8.771582046 8.394548048 8.332162453 51246484 linB Organic Remediation Pesticides related compound Desulfotalea psychrophila LSv54 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfotalea;species:Desulfotalea psychrophila; 8.530099934 9.033344257 8.816417707 8.148460178 8.706918099 9.236477781 9.319225632 9.007650746 9.098112698 9.256248324 9.486983313 9.552032724 163262654 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 9.077416776 8.593299886 9.097442904 8.443139645 7.961343424 8.090555309 8.286823746 7.921882119 8.235619582 71734408 chnB Organic Remediation Other Hydrocarbons Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 8.772882189 8.725777514 8.554997151 8.531433961 8.299847373 8.438326754 8.464161333 8.748896454 8.545899924 8.712513394 8.573837824 8.776103801 95111368 silC Metal Resistance Silver Pseudomonas superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae; 8.79421458 9.189247756 9.018831908 8.513027202 8.586935518 8.93984018 9.151477966 8.830245664 9.304074345 8.923351276 8.796440665 8.903432614 196187326 ppx Phosphorus Phosphorus utilization Brevundimonas sp. BAL3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas; 9.38490294 9.432433151 9.487550451 8.430067292 8.783055636 8.763210486 8.602080187 7.98529454 8.905428565 8.835772065 8.86119819 8.766635665 86355720 AceB Carbon cycling Carbon degradation others Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.333727333 8.281071607 8.354824529 8.172781049 7.965548315 7.720839095 7.696847051 7.915707409 8.324894546 7.790756541 7.868624839 7.910193781 124258444 exaA Organic Remediation Chlorinated solvents Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 8.397872866 8.601422124 8.389307511 8.208529303 8.655570562 8.273705257 8.680639551 8.695872596 8.761342876 255708130 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.527790188 8.234601132 7.713459583 6.891369746 8.067521055 8.128055055 7.469069929 7.629124027 7.893299608 7.734873488 146407972 ureC Nitrogen Ammonification Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.329811686 8.719604825 8.739274516 9.067944072 8.765579975 8.513846644 8.930824061 8.880290237 8.70322405 9.037844569 8.68920975 8.355993359 227958442 AceA Carbon cycling Carbon degradation others Thermomonospora curvata DSM 43183 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora;species:Thermomonospora curvata; 10.20795366 10.17670292 10.18200779 9.789642355 9.657410225 9.655895839 9.877827694 9.662520222 9.846953835 9.852484766 9.836757632 9.804619671 160867143 amyA Carbon cycling Carbon degradation Starch "Salmonella enterica subsp. arizonae serovar 62:z4,z23:--" superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 8.184661107 8.076084276 8.25437203 7.685585166 7.564110616 7.620448804 7.818368128 7.281038752 7.982954807 7.406873843 7.543449085 7.493722778 154274532 nagG Organic Remediation Aromatics Aromatic carboxylic acid Ajellomyces capsulatus NAm1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 8.867380623 8.790242496 8.997740587 8.151890234 8.002733939 8.175416194 7.995008929 7.613543555 7.891320446 7.421336115 7.946068197 153011803 glnA Stress Nitrogen limitation Ochrobactrum anthropi ATCC 49188 8.536145585 8.902760615 8.372683933 8.509900461 8.7496424 8.952741902 9.201990419 9.195787254 8.911262213 9.100659707 9.200986441 9.290163892 238602183 glx Carbon cycling Carbon degradation Lignin Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 7.270651552 7.10259855 198243036 dmsA Organic Remediation Others Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 10.10932221 9.787009458 9.661183836 9.854028282 9.79452454 9.727200848 9.67860853 9.998083106 9.95284989 9.980405234 10.09941035 9.956096723 110281217 catB Organic Remediation Aromatics BTEX and related aromatics Cytophaga hutchinsonii ATCC 33406 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Cytophaga;species:Cytophaga hutchinsonii; 9.406285946 9.237993943 9.235469166 8.885364691 9.187411483 8.96834028 8.738976116 9.304308518 8.678048583 9.289500944 9.279079276 9.55554246 86738831 Catechol Organic Remediation Aromatics Other aromatics Frankia sp. CcI3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 9.623453763 9.601286396 9.618613394 9.142349892 9.137826802 8.957444362 9.165059527 8.81129712 9.367659241 9.270125985 9.367517994 9.218839618 119715058 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 9.05300028 8.944308243 8.913547564 8.440329951 8.554506681 8.577034388 8.735604277 8.494627956 8.758992607 8.533526626 8.717455444 61653214 BchY other category chlorophyllide reductase uncultured proteobacterium DelRiverFos13D03 superkingdom:Bacteria;phylum:Proteobacteria; 9.071127292 8.925324899 8.828928999 8.587959544 8.861217047 8.824139969 8.830769236 8.708040334 8.82009723 8.84873534 8.948001104 56314383 pilin virulence pilin Aromatoleum aromaticum EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 8.897026197 8.572912693 8.767915945 9.045145308 8.924220424 9.02533197 8.776380087 9.262720228 8.996672117 8.926374564 9.177590116 8.969614681 169657240 nirS Nitrogen Denitrification Thauera sp. 63 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 8.550559625 8.377429084 8.508441459 8.324418944 8.123122403 8.458152682 8.268786816 8.196908833 8.306616895 8.264162973 8.273929327 111019986 tftH Organic Remediation Aromatics Chlorinated aromatics Rhodococcus sp. RHA1 8.422831749 8.646010187 8.716596727 7.913446271 8.004230705 8.482883791 8.801629953 8.202720889 8.978803806 8.158599299 8.005830394 8.187028968 90332594 mer Metal Resistance Mercury marine gamma proteobacterium HTCC2207 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 10.15189412 10.09298306 10.1510793 9.421279082 9.403497502 9.202360148 9.248088192 9.155710958 9.520269533 9.589116458 9.818099721 9.843480634 154156259 alkH Organic Remediation Other Hydrocarbons Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 9.810558959 9.711797456 9.720429725 8.632057577 8.933706506 9.003912507 9.540078464 9.106923218 9.868916549 8.931470483 8.947335753 8.954390344 111018257 hrcA Stress Heat shock Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.349677322 7.800704014 8.407537808 8.05915303 7.757731227 7.760298019 7.599873551 7.528278988 7.733804422 7.390881549 7.830851068 206581044 CueO Metal Resistance Copper Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 8.283144858 8.08737371 8.209048965 7.749847303 7.580696324 7.580323168 7.413244891 7.701098226 8.016096601 7.716291083 7.564969973 7.658574667 169758007 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 9.559316216 9.342227783 9.498089051 8.980201561 8.921648865 8.817643832 8.611381146 8.727476242 8.625698625 8.888125013 8.81103893 9.005803043 167350933 pstB Stress Phosphate limitation Caulobacter sp. K31 9.306434176 9.432614405 9.012211221 8.779665833 8.38644867 8.822094516 9.201371901 8.813315218 9.14062788 8.990844439 9.082073186 8.952470419 218708101 gyrB other category gyrB Vibrio splendidus LGP32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 9.418609926 9.41758118 9.178445903 9.23616154 9.453645752 9.592033133 9.251173182 9.630832357 9.354414784 9.277793231 9.316315117 9.217880646 209401768 narG Nitrogen Denitrification uncultured bacterium 8.496655016 8.192244377 8.441885045 7.931775486 8.402849076 8.304228929 7.888897168 8.573959369 8.306872772 8.554929933 8.255285674 163796109 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 8.805717389 8.69731164 8.553335597 8.229537678 8.435897338 8.651989999 8.5382756 8.570863807 8.581096434 8.379016805 8.756767286 8.328870934 146276891 sigma_70 Stress Sigma factors Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 8.734056086 8.780429509 8.509386515 8.373946742 8.624907303 8.509123714 8.737152839 8.556536146 8.654721154 8.86710893 8.972813596 8.713371686 209900680 TerC Metal Resistance Tellurium Enterobacter cancerogenus ATCC 35316 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 8.313219555 8.444810823 9.078390122 7.541089928 7.615075589 7.841941617 7.855355551 7.451205483 8.378031326 7.622412489 7.821920736 7.812762049 16420018 dmsA Organic Remediation Others Salmonella typhimurium LT2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 8.652463025 8.599311571 8.700553466 8.18726303 8.447602145 8.473999164 8.843202397 8.409888075 8.803394807 8.912676315 9.038154554 8.912151918 89150443 CopA Metal Resistance Copper Bacillus cereus subsp. cytotoxis NVH 391-98 9.053519952 8.995695062 9.138897277 8.617542367 8.510336662 8.406360668 8.440136253 8.64720348 8.521359669 8.566835777 8.377775596 8.667860169 27355885 nmoA Organic Remediation Aromatics Nitoaromatics Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.284022517 8.329251223 7.51749443 7.279569322 7.369448534 7.392452613 6.837644415 7.444598069 7.487111391 7.32252446 119378250 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.69843826 9.111085034 9.058280791 9.135185285 9.17283717 8.854150256 8.918194919 9.354825973 8.976857037 9.177081952 8.739990676 9.142277439 196478318 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 8.868462006 8.740863656 8.925642359 8.265133123 8.158978978 8.233753204 8.050303863 8.139194867 8.067190415 8.276428208 8.255545106 8.375005907 38455528 phenol_oxidase Carbon cycling Carbon degradation Lignin Pycnoporus sanguineus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Pycnoporus; 8.400377494 8.092934873 8.453117929 7.993739163 8.085405177 7.686181496 7.813583138 8.258749283 8.251937779 8.620625729 8.18421887 8.263081558 112441755 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 8.529117367 8.176077591 8.472127411 8.019548338 8.147298791 8.171918187 8.069218072 8.000904783 8.349391442 7.943746619 8.285138467 8.005927932 157151616 obgE Stress Radiation stress Streptococcus gordonii str. Challis substr. CH1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus gordonii; 7.947614827 8.07185509 7.91893011 7.545072015 8.119612193 7.985217854 7.881802475 8.12183648 7.849163463 115253427 tftH Organic Remediation Aromatics Chlorinated aromatics Rhizobium leguminosarum bv. viciae 3841 9.758391816 9.790016777 9.943386894 8.983863615 8.531473818 9.206650398 8.981260513 8.836549606 8.98285008 9.023093103 9.28974014 119536516 fnr Stress Oxygen stress Nocardioides sp. JS614 8.708934869 8.579816076 8.484008651 8.211563918 8.249120764 8.430764978 8.489915755 8.238795369 8.736934222 8.243104986 8.236113352 8.272073994 56477216 BADH Organic Remediation Aromatics Other aromatics Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 8.380326996 7.816955668 7.941440194 8.322438169 8.07198353 7.634798451 8.160694699 7.950978233 8.123982028 7.969256493 7.404802694 7.622305284 108804102 nitA Organic Remediation Aromatics Other aromatics Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 8.628085397 8.861144834 8.848596862 8.513815211 8.671472806 8.372364642 8.433365846 8.625718321 8.525138891 8.599923059 8.60411338 187603863 cellobiase Carbon cycling Carbon degradation Cellulose Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 8.11106821 7.973050818 7.514489139 7.323283981 8.047322801 8.206592008 7.806435405 7.71175573 7.836158019 8.025340425 77383659 atzB Organic Remediation Herbicides related compound Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.436662 8.604687044 8.335622055 7.783385875 8.29684699 8.206476182 8.155382244 8.457188794 8.182636278 8.247531535 8.077582559 223938480 pstC Stress Phosphate limitation bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 8.165373478 8.309058942 7.774360128 7.811645421 7.843528608 7.490017475 8.026907027 8.147498195 7.962179382 7.939693922 8.024060332 116665020 ArsC Metal Resistance Arsenic Methanosaeta thermophila PT superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosaetaceae;genus:Methanosaeta;species:Methanosaeta thermophila; 9.177609591 8.751062621 9.227610879 8.728918429 8.893595113 8.770666124 8.755419983 8.856002883 8.600015274 8.847013352 8.704967655 8.780511438 114706574 sox Sulphur Sulphur oxidation Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 8.927412026 8.548077102 8.391671294 8.429073353 8.31825763 8.204581805 8.260415943 8.48072445 8.345397847 8.366123102 8.492582055 84510304 oxyR Stress Oxygen stress Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 8.961231081 8.668104605 8.812084293 9.186005121 8.880074879 8.572086505 9.059529937 8.993588627 8.686017629 8.828998249 8.963365044 8.542581659 270269276 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira; 8.447649356 8.934489989 8.930147625 8.3903017 8.257564159 8.074837609 8.11893007 7.885464432 8.556482661 7.88404911 7.788285504 8.26291569 222452312 SMR_antibiotics Antibiotic resistance transporter Halorubrum lacusprofundi ATCC 49239 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 8.410750352 8.983664463 8.248013708 8.490771465 8.404564653 8.340372938 8.903852599 8.385572056 8.79187723 8.653142457 8.606762109 260088754 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 8.281117341 8.500011117 8.586622671 8.071256783 7.576894646 8.162722878 8.24882274 7.76733344 7.75306757 7.836707495 8.248235779 229209337 B_lactamase_C Antibiotic resistance Beta-lactamases Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 9.645564429 9.586228725 9.260266616 9.552274604 9.544574401 9.205671932 9.734098543 9.68916044 9.159128305 9.543042682 9.670612548 9.213439648 78697610 atzD Organic Remediation Herbicides related compound Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.268531155 8.221655657 8.118436843 7.997908694 7.745339624 7.652809493 8.003971911 8.227743107 7.736705467 7.598968811 7.726447723 184199505 nirK Nitrogen Denitrification uncultured denitrifying bacterium superkingdom:Bacteria; 8.388810311 8.193674032 8.440095616 8.150504323 7.583627495 7.730907769 7.734663694 7.382440481 7.714051241 7.476350403 7.891103167 110679323 ppk Phosphorus Phosphorus utilization Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 9.005895447 9.196820086 9.131596369 8.014942118 8.374943223 8.874200907 9.298812388 8.281156909 8.970725331 8.35235261 8.521964155 8.487678091 215459877 BpH Organic Remediation Aromatics Aromatic carboxylic acid Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 7.402916442 7.556204651 7.703911361 8.11372801 7.368241787 7.833756115 7.881154518 7.449859062 7.83266897 188595290 nrfA Nitrogen Dissimilatory N reduction Porphyromonas gingivalis ATCC 33277 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas;species:Porphyromonas gingivalis; 8.988734569 9.149740708 8.995498369 8.593962874 8.70203808 9.04471373 9.172565937 8.920319889 9.199012664 9.092769678 9.279055385 9.168016587 4808515 pcaG Organic Remediation Aromatics Other aromatics Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.483210691 8.403282979 8.547838435 7.543837772 7.726114323 8.26096765 8.439011953 7.840376903 7.580500075 7.632081537 7.605201509 42741696 pstA Stress Phosphate limitation Alcaligenes faecalis 8.698273572 8.63721611 8.565561434 8.588877613 8.250607015 8.553933406 8.382364257 8.55752387 7.922318677 8.516775568 8.653946302 8.826038881 19909613 gyrB other category gyrB Methylococcus capsulatus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 9.172247522 9.311646773 9.219751662 8.600496922 8.879713278 8.740954953 8.679647217 8.430793648 8.703471908 8.607081849 8.825627351 27354699 HBH Organic Remediation Aromatics BTEX and related aromatics Bradyrhizobium japonicum USDA 110 9.082310554 9.015659779 9.152581048 8.824664009 9.060604211 8.811303248 8.780780948 8.997083295 8.961471072 88699673 atzA Organic Remediation Herbicides related compound Congregibacter litoralis KT71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 9.003873766 9.0364565 9.266860414 8.388726475 8.33569211 8.411425407 8.057194085 8.082128692 8.198177548 8.181433325 8.551074718 172065187 cap virulence capsule Burkholderia ambifaria MC40-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 8.73261218 8.693750258 8.421469435 8.457048584 8.629876511 8.749400285 8.528499652 8.498388012 8.702246228 8.279799652 8.606090801 8.261912293 71915782 katE Stress Oxygen stress Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 8.737311502 8.611101538 9.057656325 8.349461149 8.267999695 8.193054162 8.290433311 8.216767381 8.077499904 8.165896986 8.18365213 8.311524144 238940457 katE Stress Oxygen stress Zygosaccharomyces rouxii superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Zygosaccharomyces; 8.753936424 8.790093265 8.061427523 8.088968002 8.232544163 7.824719943 7.938869989 7.869277535 8.125056363 7.784390074 114737418 exaA Organic Remediation Chlorinated solvents Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 8.250128657 8.43610002 8.483863653 7.904498681 7.792957884 7.585211002 7.842480594 7.560799251 7.703349084 7.596373529 7.599100422 121611522 tftH Organic Remediation Aromatics Chlorinated aromatics Verminephrobacter eiseniae EF01-2 8.71267853 8.609354158 8.612419097 8.398403936 8.341371002 8.341439459 8.588406421 8.535687687 8.518179787 8.419089401 8.412523597 8.239462728 74317157 pstB Stress Phosphate limitation Thiobacillus denitrificans ATCC 25259 8.001776391 7.966053097 7.923683652 7.694507046 7.956619366 7.790777285 7.777710485 8.224380666 7.750177789 7.732028013 7.725735155 187728603 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 9.156774116 8.567960649 8.458932244 9.090060141 8.920326275 8.815922511 9.167555679 8.901708396 9.098779 8.853904901 8.782237488 8.681746079 272536051 sigma_24 Stress Sigma factors Burkholderia sp. CCGE1002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.167425487 8.263802593 8.269912047 8.067348045 7.84445816 7.939593338 8.134287123 8.160770224 7.964037259 7.964680847 8.151402925 119698429 amoA Nitrogen Nitrification superkingdom:Bacteria; 8.381249997 8.603857149 8.729248547 8.403367223 8.216485292 7.759481593 8.152264754 8.444137706 8.59900538 8.369670961 8.133626119 8.353833564 226721767 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 9.28267623 9.31182382 9.392600411 8.655803632 8.728095991 8.676752461 8.980450529 7.84443578 9.15164013 8.538010538 8.677904337 8.574876987 237752238 cap virulence capsule Helicobacter winghamensis ATCC BAA-430 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter winghamensis; 8.845537729 8.314123438 8.700196284 8.199375284 8.072320961 7.891074428 7.631548982 7.677087279 8.078546469 7.401233183 8.073118824 8.307466517 154247878 pstC Stress Phosphate limitation Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.701102319 8.161199334 8.421995841 7.668880969 7.780372787 8.178049395 7.305163579 8.047945436 7.873876382 8.480080575 167563648 pcpB Organic Remediation Herbicides related compound Burkholderia oklahomensis EO147 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia oklahomensis; 8.629448357 8.21649409 8.32194133 8.391833781 8.053037674 7.874434534 8.351033687 8.404996011 8.106346776 8.152309611 7.879481939 87134937 proO Organic Remediation Aromatics Other aromatics Novosphingobium aromaticivorans DSM 12444 8.707264886 8.81964592 8.757525961 8.77635628 8.644145123 8.311097741 8.752373308 8.310489898 119373372 nitA Organic Remediation Aromatics Other aromatics Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.762640669 8.94046375 8.694132501 8.368109719 8.293853254 8.267573744 8.272972106 8.430498049 8.486192371 8.471883187 8.568531088 116743228 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.668261782 8.595089053 8.700258119 7.984201465 7.997581194 7.992976263 7.832999072 7.534424234 7.589259296 7.65818258 8.158130834 117607579 grpE Stress Heat shock Magnetococcus sp. MC-1 superkingdom:Bacteria;phylum:Proteobacteria;genus:Magnetococcus; 9.178103044 9.243662917 9.56997283 8.698875804 8.709118531 8.639406085 8.597567084 8.519418842 8.640856687 8.578472516 8.430260068 8.959705291 169793474 narG Nitrogen Denitrification uncultured bacterium 8.770166859 8.871528584 8.657394187 8.425232746 8.280685542 7.82894971 8.239741774 8.453008678 8.357431243 8.281393175 8.502093898 261820170 hly virulence hemolysin Pectobacterium wasabiae WPP163 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium wasabiae; 9.545158852 9.793380992 9.904647312 9.14265353 9.118000403 8.915157918 9.132008992 9.534019772 9.049725851 9.251782035 9.385799521 9.551059037 158520086 grpE Stress Heat shock Desulfococcus oleovorans Hxd3 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus;species:Desulfococcus oleovorans; 8.885052424 8.809750583 8.756519949 8.92312291 9.027288304 8.907591944 8.705269217 9.163462307 8.919946404 9.025925415 9.22411019 8.912297718 94555598 clpC Stress Protein stress Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 9.365741358 9.138402469 8.998948971 9.37906643 9.442441026 9.45909448 9.587985326 9.583086302 9.394414277 9.264815225 9.406174846 9.249202796 70996666 iro virulence Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 7.702393422 7.358758717 7.530720962 7.530074838 7.166300585 239519263 cda Carbon cycling Carbon degradation Starch Clostridiales bacterium 1_7_47_FAA 9.036614382 8.633187076 8.902121812 8.394304366 8.207501232 7.857201106 8.342011901 8.297307978 8.335208514 8.510838818 8.730530688 8.15070869 76056969 narG Nitrogen Denitrification uncultured bacterium 9.577256852 9.58905722 9.738111733 8.855312925 8.66933005 8.76899483 8.76005412 8.611236942 8.801412116 8.846500541 9.137204876 68164638 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.309067054 8.363972193 8.245351163 7.545881428 7.394987339 7.641359022 7.59680882 7.499780084 7.483437254 7.544703344 7.645537367 134050997 hly virulence hemolysin Desulfotomaculum reducens MI-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum reducens; 8.512922785 8.371636988 8.692832267 8.278943011 8.064557069 7.858072063 7.429902466 7.245337057 7.909383218 7.49709765 8.04877522 145303884 CadA Metal Resistance Cadmium Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 9.760167991 9.522399602 9.589551273 9.14679381 9.116887783 8.773170559 8.771985666 8.7788497 8.779258132 8.897262676 9.083208193 89512742 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.28981754 8.284761046 7.992867563 7.559659399 7.663556706 7.614122435 7.678738313 7.786169939 7.982074867 8.278068582 8.210295262 8.099407483 56787886 pcaG Organic Remediation Aromatics Other aromatics Novosphingobium subarcticum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 8.17252043 8.366630549 8.261165258 8.002169101 8.289246686 8.228800643 8.506996302 8.377691132 8.408660504 8.515832803 8.540230059 53987088 ureC Nitrogen Ammonification Arthrobacter sp. T11-6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8.857294543 8.967054831 9.098264519 8.531164881 8.497877073 8.376625366 8.483313252 8.235022769 8.349155934 8.302048792 8.328615174 8.583492719 254397471 amyA Carbon cycling Carbon degradation Starch Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 8.701693358 8.587667506 8.217355868 8.473179809 8.893865636 8.841175743 8.890470254 8.84935893 8.81179981 9.062772604 8.825989911 169629725 SMR_antibiotics Antibiotic resistance transporter Mycobacterium abscessus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.588957214 9.027642298 8.833722306 8.878552703 8.900591472 8.878525488 8.710143329 9.373580394 8.709906867 9.101221961 9.245079142 8.744212394 226092555 AceA Carbon cycling Carbon degradation others Brevibacillus brevis NBRC 100599 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus brevis; 8.616503292 8.497502491 8.884386126 8.121602655 8.064397719 8.090002374 8.026547929 8.090101052 8.085461545 8.088573897 7.949136353 8.237696943 126035179 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 8.727941822 8.66568464 8.91084666 8.292125537 8.05694973 8.261466507 7.832948951 7.636598353 8.185714422 8.115440257 8.217168025 8.363852558 162456295 alkK Organic Remediation Others Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 9.038758501 8.394395921 8.581723672 8.045262191 7.804275009 7.698894379 7.775705817 8.010471908 8.117931719 7.82494087 7.903946592 8.028301987 29609075 tfdA Organic Remediation Aromatics Chlorinated aromatics Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 8.320147187 8.450258381 8.277848549 8.526653202 8.296950559 8.139051484 7.993674496 8.408530877 8.522555295 8.292009631 8.127356051 8.163534353 91794508 ChrA Metal Resistance Chromium Shewanella denitrificans OS217 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella denitrificans; 8.987299764 8.843174381 9.083230781 8.433600267 8.442519785 8.313206636 8.043954541 8.221790605 8.186879198 8.36221157 8.32214791 8.593011569 192360477 obgE Stress Radiation stress Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 8.685237423 8.517876892 8.62057584 7.960730391 8.066392007 8.094394883 8.059707237 8.053391429 8.445262705 8.277553301 8.100554471 8.193227467 148262009 CadA Metal Resistance Cadmium Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 9.198702986 8.837829495 8.400303845 8.768764006 8.767163802 8.807170773 8.208421097 8.925963731 8.293646565 8.823892845 8.798643113 8.529231729 159177622 pstB Stress Phosphate limitation alpha proteobacterium BAL199 9.559238242 9.486471231 9.06210554 9.35042208 9.548429712 9.542614975 9.343526376 9.798374851 9.54026268 9.572235003 9.514689436 9.381197845 157741868 rubisco Carbon cycling Carbon fixation Mycobacterium sp. DSM 3803 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.740133194 8.418611425 8.674442294 8.422196789 8.341140605 7.604671189 8.458271465 8.36480704 8.563256503 8.100475589 8.151568935 7.653887178 86279917 phn Organic Remediation Herbicides related compound Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.694451953 8.674302253 8.609237754 8.261032838 8.165636544 8.104120875 8.117298752 8.135630349 8.12699191 8.008754881 8.021471023 8.226074214 149783455 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.556630862 9.650660876 9.050887108 9.277866418 9.284598572 9.156525917 9.458611385 9.407758607 9.123825158 9.454628039 9.512725229 9.384995665 257899780 endochitinase Carbon cycling Carbon degradation Chitin Enterococcus faecium Com15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus faecium; 8.23582646 7.873390597 7.379213544 7.30732238 7.007571885 6.761407775 6.886313838 7.581332952 7.007483647 7.569293723 94313504 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.324502984 8.402472451 8.288941173 8.380748917 8.074585223 8.698115945 8.537965596 8.405220186 8.369911176 8.440031046 8.149983067 83308649 nagG Organic Remediation Aromatics Aromatic carboxylic acid uncultured bacterium superkingdom:Bacteria; 8.445488669 8.670344824 8.366641526 8.038660335 8.175592118 8.266616599 8.359979693 8.323713451 8.584030125 8.30563989 8.244955089 7.850094578 16331536 sigma_24 Stress Sigma factors Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 8.446497604 8.269401682 8.367782025 8.370643142 8.209917745 8.404535992 8.561219667 8.748193547 8.338263813 8.788302283 8.837880111 8.584691663 260777186 MFS_antibiotic Antibiotic resistance transporter Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 8.075150089 8.057009165 8.297822104 7.492596388 7.426222218 7.678351597 7.967716235 6.830758075 8.23230277 7.58248017 7.646573429 7.857897102 167352691 katE Stress Oxygen stress Shewanella halifaxensis HAW-EB4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella halifaxensis; 8.985413117 8.969043513 9.137842349 8.492345629 8.208782871 8.068481604 8.279556413 8.179433442 8.36738462 8.162140102 8.41358632 8.699458382 87300726 nasA Nitrogen Assimilatory N reduction Synechococcus sp. WH 5701 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 9.386059344 9.311597923 9.135466895 9.095942776 9.152604719 9.14025525 8.969086177 8.910961126 9.269851393 8.932880377 9.207918875 9.028552821 258576929 glx Carbon cycling Carbon degradation Lignin Uncinocarpus reesii 1704 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 8.209755287 7.989066811 8.352133009 7.699528354 7.540005747 7.412372043 7.049952621 7.39049855 7.653119729 7.644029556 7.391090861 7.623920346 170657317 iro virulence Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 9.093820463 9.101367648 9.077938198 9.027993169 8.875057817 8.695783642 8.824831529 9.005088308 8.85749082 9.006746173 8.925936266 9.146168226 167348311 nahA Organic Remediation Aromatics Polycyclic aromatics Caulobacter sp. K31 8.568353599 8.885234452 8.902514698 8.572206826 8.672231018 8.178108242 8.794551706 9.252618116 8.761427023 9.124991277 8.711766671 8.950291987 253574458 amyA Carbon cycling Carbon degradation Starch Paenibacillus sp. oral taxon 786 str. D14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 9.906200236 9.810034327 9.915958202 10.31485357 9.945459981 9.563604238 10.15857355 10.13760886 9.777315246 9.925900638 9.716311479 9.882217928 118016697 phn Organic Remediation Herbicides related compound Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 8.797787289 8.573583464 8.50269633 8.464718558 8.534425499 8.167568751 8.485773689 8.873420665 8.434217393 8.905526746 8.73012071 8.849345802 126729754 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 8.20719649 8.122574422 7.812735328 7.339658227 7.783398226 7.511512975 7.090847562 7.928533145 150376136 MFS_antibiotic Antibiotic resistance transporter Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 9.832086264 9.597068262 9.758413996 9.153969521 9.080851124 8.961726614 9.513235889 9.001869542 9.890356302 9.002881621 8.646383302 9.077979846 55791946 catechol_B Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 8.499295001 8.044145036 8.041208203 8.39213946 7.99977092 7.775666176 7.481139577 7.574204951 8.273400847 7.704026403 7.589526583 7.500185441 82470014 lip Carbon cycling Carbon degradation Lignin Ganoderma formosanum 9.178188646 8.845254716 8.669609078 8.910716159 8.911089999 8.806542827 8.306233789 8.832795318 8.70550672 8.796631261 9.016573694 8.56886427 114762139 gyrB other category gyrB Roseovarius sp. HTCC2601 9.566845725 9.668140428 9.37853904 8.856968987 9.001545259 9.043984742 8.983415751 9.112525401 8.9966261 8.972145965 9.074099024 9.336410407 45386203 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 9.285265495 8.984211013 9.306850806 9.175829963 8.995195845 8.752720319 8.802222307 8.758752792 8.744451346 8.885774048 8.997867594 8.591146632 260648870 pstA Stress Phosphate limitation Streptomyces scabiei 87.22 8.984730689 8.846120639 8.781040255 8.359880693 8.418932807 8.282520685 8.259029246 8.601734915 8.242358746 8.351009571 8.540123171 268549524 amoA Nitrogen Nitrification superkingdom:Archaea; 8.494379668 8.752911186 8.81717581 7.995080762 8.172938187 8.580472178 8.463672704 8.591042805 8.583331995 8.172398648 8.345861993 8.200025665 27378670 phoB Stress Phosphate limitation Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 9.954681737 9.906973124 9.891056457 9.400099985 9.403182829 9.213361014 9.651494615 9.713317913 9.634099738 9.774608544 9.548904639 9.602242907 126707317 sigma_24 Stress Sigma factors Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 8.750722253 8.399869839 8.423582392 8.345432428 8.376186561 8.116001706 8.031444882 8.38392474 8.483892992 8.325711378 8.096599065 8.177389688 34499664 pilin virulence pilin Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 8.910932158 9.140009391 9.23536055 8.701681006 8.643770557 8.345796649 8.640217543 8.825733108 221562604 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.273500048 8.02572675 8.325221275 7.673937496 7.453631873 7.346453038 7.305562442 7.244029469 7.542974131 7.271270951 7.278653457 7.331057958 116634801 narG Nitrogen Denitrification uncultured bacterium 8.900893454 8.624664376 8.896311617 8.615640378 8.498819753 8.379323407 8.62949424 8.420356385 8.565322808 8.280631703 8.302234762 8.35310448 27349245 pcpE Organic Remediation Herbicides related compound Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 9.984182601 9.823983505 9.872839487 9.341005745 8.711104415 9.37545819 9.333317825 9.334911353 9.480114027 9.509210272 9.726188894 89895909 obgE Stress Radiation stress Desulfitobacterium hafniense Y51 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 8.936714478 8.850797344 9.031055373 8.395781507 8.315108375 8.235595511 8.125856412 8.266286853 7.844085055 8.156509774 8.175391065 8.390521415 113728353 Arylest Organic Remediation Aromatics Other aromatics Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 8.47865046 8.541995578 8.937982652 8.88973807 8.879101763 8.614702542 8.980574402 9.084341714 8.809722874 8.945549064 8.905358685 9.016910804 46128645 AceB Carbon cycling Carbon degradation others Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 8.546320073 8.07361837 8.386918186 8.047943645 7.741485388 7.77813929 7.974186081 8.113385193 7.830055578 8.022118191 7.944728093 8.113943143 85707360 CopA Metal Resistance Copper Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.559923707 8.423758138 8.477867597 8.294988542 8.237441838 8.276548876 8.259772615 8.207450627 8.495026268 8.370488905 8.363493502 116699708 ZntA Metal Resistance Zinc Syntrophobacter fumaroxidans MPOB 8.323315194 8.502249432 8.62919406 7.947485211 7.781124498 7.762455563 7.29224252 7.210306534 8.057985421 7.64995737 7.397227177 7.88192912 90196221 ZntA Metal Resistance Zinc Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 9.226903746 9.444408716 8.620021451 9.10691843 169002637 ChrA Metal Resistance Chromium Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 8.524456582 8.335624334 8.493843764 8.286055352 8.205721824 7.866175602 7.914640327 8.334051294 8.185352882 7.918814253 8.242185901 71848798 pstB Stress Phosphate limitation Dechloromonas aromatica RCB 9.041197303 9.067891384 8.904193945 8.558204735 8.67379166 8.851735044 8.982839966 8.81038283 9.265100089 9.003031891 8.885229317 9.127210176 145322737 mauAB Organic Remediation Herbicides related compound Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 8.651980128 8.646170555 8.403535566 8.527149596 8.520385871 8.866911852 8.617048154 8.397667132 8.679151131 8.93273131 8.707384039 83943513 AceA Carbon cycling Carbon degradation others Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 8.220371733 8.458496236 8.356937731 7.87890637 7.934739272 8.291842425 8.288883784 7.963637969 7.948999624 8.333005925 8.111877223 8.313932576 116227479 trzN Organic Remediation Herbicides related compound Solibacter usitatus Ellin6076 9.448169321 9.500985727 9.75332961 8.885653287 9.107143146 9.099146938 9.097558304 9.190597908 9.161405402 9.269235175 9.368912199 68201824 alkB Organic Remediation Other Hydrocarbons Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.262478693 8.698603021 8.31497376 8.503288496 8.60574182 8.324777301 8.539385579 8.898421727 8.714160107 8.754893073 8.617882816 8.782086573 219563102 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 8.62674183 8.458223934 8.417293895 8.467852764 8.21990288 8.076394587 8.166649046 8.211808591 8.262028203 8.096937721 7.735834952 8.022106797 226354963 MATE_antibiotic Antibiotic resistance transporter Deinococcus deserti VCD115 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 10.0372528 10.26899251 10.46706228 9.146589421 9.716480223 10.07699855 10.57546414 9.846268659 10.41437098 9.812388579 9.9681182 10.13387814 146396283 cytochrome Energy process Energy process Geobacter uraniireducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 8.636796047 8.19379542 8.563247931 7.832682745 7.673607216 7.814218787 7.652783767 7.603269665 7.762003036 7.598683126 7.57297101 7.734983756 160933124 ppk Phosphorus Phosphorus utilization Clostridium leptum DSM 753 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 8.647589064 8.800764361 8.439712414 8.036601079 8.317290443 7.858980546 8.160862368 8.649294048 8.066336134 8.472050797 8.482629233 8.58675691 25990800 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 8.513358778 8.472484513 8.52454397 8.241177269 8.242961538 8.063072153 8.016082451 8.227731026 8.165959245 8.149082765 8.177849845 8.29702677 76058152 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.303899215 9.618324712 9.035938589 9.13543666 9.407575318 9.248803631 10.03874257 9.538409658 9.667387992 9.381726374 9.386842742 260848363 ctsR Stress Protein stress Mitsuokella multacida DSM 20544 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Mitsuokella;species:Mitsuokella multacida; 7.562925958 7.696123278 7.475822155 7.363917382 7.177275433 7.60408803 7.460586691 7.469807341 7.461915754 46205208 mer Metal Resistance Mercury Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 8.300803093 8.35975785 8.545114601 7.932686041 7.698411164 7.860007255 7.83776888 7.727246438 7.902451707 8.074902201 7.780773359 7.952701208 158138863 narG Nitrogen Denitrification uncultured bacterium 8.750984757 8.5512461 8.769936196 7.986283597 8.046223762 8.027321329 7.780352469 7.81733312 8.249268312 7.92819368 7.744423853 8.071734639 83816485 hly virulence hemolysin Salinibacter ruber DSM 13855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 9.749907578 9.738489092 9.736275387 9.256720033 9.242209163 9.358653318 9.760204632 9.026115608 9.556616529 9.003248079 9.005872972 9.293557731 77955729 gyrB other category gyrB Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 8.455456612 8.220392759 8.614408393 7.873312941 8.125387711 7.635495103 7.782132029 8.180816821 7.837794911 7.827702079 8.093382895 197105952 fnr Stress Oxygen stress Phenylobacterium zucineum HLK1 8.928391182 8.950493262 9.097609131 8.949118877 9.013165756 9.299560401 9.263328905 9.212109527 9.456476782 9.357167483 9.419405426 9.44795807 108860571 gyrB other category gyrB Rhodococcus maanshanensis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.137545459 8.192693111 7.858185423 7.834921333 7.618259476 7.448621816 7.817524797 7.921303254 7.683517216 7.781738843 62003569 narG Nitrogen Denitrification uncultured bacterium 8.881340011 9.11887444 9.014386194 8.716653055 8.492280452 8.186507103 8.216984033 9.170156739 8.754154805 8.481865708 8.316068565 8.807792323 91720585 pcc Carbon cycling Carbon fixation Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 8.226240185 8.337696274 8.876794684 8.125780475 7.921135471 8.244712918 8.21316898 7.842223036 8.388725592 7.783919087 7.914802555 8.233559999 227950903 glnA Stress Nitrogen limitation Meiothermus silvanus DSM 9946 8.975012437 8.595507741 8.962891964 8.506704272 8.5430117 8.577831094 8.13597697 8.241256464 8.885551214 8.261923641 8.26346629 8.369411782 177839673 sigma_24 Stress Sigma factors Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 10.30338674 10.06973039 10.14936314 9.939223573 10.06856156 9.824985526 10.08157867 9.96761308 10.35465059 10.36261657 10.33975482 10.367744 170113732 mnp Carbon cycling Carbon degradation Lignin Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 8.152210477 8.277943735 8.014492776 7.538929233 7.954441153 7.75191005 7.844331424 8.576884627 7.740593215 7.558397354 7.563819004 46015 nifH Nitrogen Nitrogen fixation Rhodobacter capsulatus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 9.171771687 8.981505084 8.32778678 8.183499705 9.104864272 8.851500002 9.162349658 8.283560896 9.049873472 7.846975371 8.596105366 8.25976923 69936820 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Paracoccus denitrificans PD1222 8.588523533 8.495001386 8.468305797 7.986263841 7.824977916 7.952405254 7.878595691 7.727919934 7.721144062 7.483520563 8.022795278 149809649 sox Sulphur Sulphur oxidation Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.86814799 8.914355105 8.513899164 9.070290089 8.786269909 8.032329866 8.985969929 8.92565275 9.046446897 8.711619186 8.552436791 8.362340978 83845580 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 8.834595678 8.77708493 8.696079675 8.206207787 7.957125816 8.269953593 8.139643189 7.744508396 8.017817305 8.200577656 8.135805196 8.117556957 85703119 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.886537921 8.838153041 8.999045779 8.244519822 8.235828958 8.445969794 8.69821241 8.208779735 8.953051154 8.304204986 8.47993736 8.289794814 221738036 nasA Nitrogen Assimilatory N reduction Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 9.17973661 9.084936205 9.092805267 8.622424766 8.536718647 8.704561735 8.644668229 8.509905162 8.834744146 8.752249931 8.954902853 8.877325353 32474487 sigma_70 Stress Sigma factors Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 8.814916769 8.807094544 9.024301775 8.299539884 8.429112555 8.29975814 8.249332836 8.245324431 8.704606661 8.287813317 8.314104764 8.521222533 170140072 ophC Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 8.976083346 8.886902458 9.208575343 9.00580707 8.705215417 8.539673492 8.915088385 8.82205339 8.728646387 8.429026113 34733392 sigma_70 Stress Sigma factors Hydrogenobacter hydrogenophilus 8.134114619 7.958528989 7.415471572 7.572727392 7.737653396 7.774990577 7.983611595 7.789202997 7.506102077 3169046 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.813743601 8.823289282 8.731900917 8.546720147 8.984193337 9.182108273 8.669820646 8.77383512 8.820856738 8.656117157 9.258491905 8.710793118 160917599 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.207045775 8.009783649 8.309871248 7.626963489 7.787702184 7.591804541 7.740881637 7.808002265 7.74943351 7.885281699 8.269595876 218893996 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas aeruginosa LESB58 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 9.144090748 8.933385429 9.11567709 8.571383808 8.472745278 8.859525434 9.299755105 8.502396861 9.289353919 8.663198959 8.740668952 8.80468049 118663208 cellobiase Carbon cycling Carbon degradation Cellulose Clostridium cellulolyticum H10 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium cellulolyticum; 8.455842885 8.401721961 8.847186353 7.65400126 7.769245611 7.9603523 7.616576681 7.818449245 7.863692154 62512311 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.608539755 8.549998026 8.678557503 8.751549942 8.405859096 8.165075795 8.549963766 8.405810928 8.556426003 8.409119903 8.78551333 8.244678107 251789465 narI Stress Oxygen limitation Dickeya zeae Ech1591 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 8.979199632 9.070917523 8.916927298 8.695097539 8.445995709 9.042097793 9.119305389 8.520689968 9.001246345 8.764352816 8.60100414 8.442239633 148555001 tfdA Organic Remediation Aromatics Chlorinated aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.622373324 8.44700936 8.4353887 7.982980467 8.051176963 8.178010808 8.183286402 8.218193653 8.201030495 8.384862849 8.097168227 8.358061962 94266057 pstC Stress Phosphate limitation delta proteobacterium MLMS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 8.385339121 8.305122199 8.53008891 8.106457589 7.854102783 7.633605438 7.564945708 8.040249246 8.055346091 7.901441399 7.730277971 7.997708641 89350572 bphF1 Organic Remediation Aromatics Polycyclic aromatics Xanthobacter autotrophicus Py2 8.521882279 8.185065232 8.740832426 8.499317321 8.379727698 8.107305924 8.252785625 8.44950807 8.453247308 8.450521235 8.44001422 8.248286026 154246680 atzB Organic Remediation Herbicides related compound Xanthobacter autotrophicus Py2 8.695866148 8.660466091 8.683170737 8.463154708 8.260676573 8.21768468 7.995528403 8.152288076 8.359467366 8.188530106 8.082482553 8.422926554 145094 hydrogenase Energy process Energy process NiFe] hydrogenase large subuni superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 8.060875713 7.846117878 7.861212529 7.935291126 8.284259785 8.259118026 8.066571886 7.956106499 8.058728491 194332890 narI Stress Oxygen limitation Prosthecochloris aestuarii DSM 271 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Prosthecochloris;species:Prosthecochloris aestuarii; 8.219117285 8.156112774 8.404670836 7.812246434 7.983426188 7.575850329 7.524746874 7.536744867 7.919285637 19421914 rd Organic Remediation Chlorinated solvents Desulfitobacterium hafniense 9.007874415 8.82254276 9.029761661 8.593112229 8.612434483 8.420736833 8.796801993 8.952090829 8.812725091 8.826530131 8.498926987 8.800655794 116626963 sigma_24 Stress Sigma factors Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 9.234931066 9.378216306 9.430288005 8.531672251 8.594505666 8.589871734 8.899550995 8.303696863 8.397071648 8.465503895 8.821244791 76666809 narI Stress Oxygen limitation uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9.158950029 8.95493424 9.353593929 8.811397118 8.690686499 8.61749156 8.519252838 8.508429818 8.566298457 8.537725765 8.398676254 8.836278404 229377926 pstC Stress Phosphate limitation Oxalobacter formigenes HOxBLS superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Oxalobacter;species:Oxalobacter formigenes; 8.884068187 8.861944493 8.774309047 8.150110414 8.237862862 8.285746692 8.325707811 8.004298051 8.293177908 8.145080584 8.031648123 8.361835405 209958899 fnr Stress Oxygen stress Rhodospirillum centenum SW 11.47775649 11.31061641 11.50470731 10.5157724 10.52611575 10.55464945 10.69071847 10.49517892 10.97435312 10.63835342 10.63174671 10.61885596 158329941 narI Stress Oxygen limitation Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 9.118490634 9.233686376 9.015654832 8.758004826 8.969877886 9.078538159 9.414874169 9.25174378 9.231944669 9.485029914 9.371899256 9.558389919 62468128 bco Organic Remediation Aromatics Aromatic carboxylic acid Thauera selenatis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 9.24065778 9.1544639 8.871049304 9.016539167 8.974635359 9.285391439 9.448337472 8.598266084 8.950132912 8.97903453 9.303655648 8.807175602 257446587 grpE Stress Heat shock Enhydrobacter aerosaccus SK60 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Enhydrobacter;species:Enhydrobacter aerosaccus; 8.173378206 8.357818363 8.49841015 7.352782857 7.642099878 7.61380175 7.661878029 7.032517495 7.179958025 6.816339629 7.854192899 77378465 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.508517613 8.435455004 8.346052832 7.623226934 8.200495975 8.39015271 8.30610514 8.27021854 8.560485979 8.143847943 207089113 CopA Metal Resistance Copper Nitrosococcus oceani AFC27 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 9.402361187 8.937951655 9.250043992 8.185910243 8.473034198 8.421118918 7.793695859 7.529024844 8.05810187 8.590989843 89345753 ahpC Stress Oxygen stress Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 6.975825825 6.902993217 7.061031244 6.703342317 6.848018719 269790966 ara Carbon cycling Carbon degradation Hemicellulose Thermobaculum terrenum ATCC BAA-798 superkingdom:Bacteria;genus:Thermobaculum;species:Thermobaculum terrenum; 9.441333469 9.331227028 9.449237672 8.480616258 8.471306533 8.658867904 9.116034892 8.571296493 9.090661345 8.667029914 8.757689757 8.850339022 134093784 czcC Metal Resistance "Cadmium,Cobalt,Zinc" Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 8.449822296 8.111849843 7.920158461 7.702425448 7.551021703 7.488704954 7.509997809 7.646292191 7.442592437 7.87718492 238798716 pstA Stress Phosphate limitation Yersinia mollaretii ATCC 43969 9.800982391 9.462468436 9.457789204 9.14528865 9.136282858 9.229126471 9.62816178 9.299177013 9.588425747 9.244880396 9.412253685 9.249488834 261363936 pilin virulence pilin Neisseria mucosa ATCC 25996 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria mucosa; 8.341061106 8.04299492 7.801482751 7.441319167 7.723740236 7.166594977 7.035773943 7.889744904 7.278188298 7.146096629 7.382764825 114571236 pimF Organic Remediation Aromatics Aromatic carboxylic acid Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 8.762813607 8.655092639 8.885890682 8.462146124 8.833577367 8.456603098 8.323011641 8.347741996 167358452 gyrB other category gyrB Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.601256599 8.433943444 8.465451702 8.003464738 8.047671149 7.917048301 7.908272003 8.376766105 8.324057604 8.350932583 8.220993694 8.051412291 119373932 TehB Metal Resistance Tellurium Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.081761822 8.293097351 8.395526509 8.248773904 8.32356498 8.309661688 8.296320028 8.763124409 8.489552101 8.718779727 8.402774032 8.630694139 39933735 bco Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.344149084 7.666031816 7.901355826 7.634435015 7.829378927 8.088190291 7.593583369 7.865102731 7.487975943 33284995 ChnA Organic Remediation Other Hydrocarbons Acinetobacter sp. NCIMB9871 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 8.720005935 8.969628193 8.877617692 8.437313775 7.935863973 8.240836565 8.01224435 7.702199731 8.489053352 7.773556848 7.796938163 8.16976636 219956344 TehB Metal Resistance Tellurium Anaeromyxobacter dehalogenans 2CP-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 9.062974411 9.007532983 9.037131158 8.912289778 8.909691307 8.728885745 9.050972111 8.793051405 8.524787867 8.679696116 8.734812813 8.988499952 87331854 arhA Organic Remediation Aromatics Heterocyclic aromatics uncultured bacterium 9.637268293 9.299281455 9.734264698 8.727228301 8.665502531 8.840966075 8.656223143 8.533786876 8.979353108 8.65864815 8.510373005 8.791724787 46240782 cbdA Organic Remediation Aromatics Chlorinated aromatics Bradyrhizobium sp. RD5-C2 10.22086633 9.889240443 10.03748323 9.724753798 9.703181789 9.781409648 9.857053151 9.885061779 9.991609758 9.851822863 10.06818861 9.792032166 219965663 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.718974012 8.548558505 8.714411461 8.36787742 8.432237481 8.406325558 8.497592689 8.286302713 8.755273215 8.095576421 8.33648426 8.221507437 106770387 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 8.438098649 8.328257013 8.517674456 7.848593954 7.869154196 7.914642238 8.136825443 7.961707851 8.369232356 7.964538464 7.56141131 7.762293073 126658952 CopA Metal Resistance Copper Cyanothece sp. CCY0110 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.728734503 8.443538872 8.809513363 8.342573516 8.35840085 7.974379709 7.814075797 7.486154932 8.017996389 7.93464022 7.990223974 8.292099978 154687999 cydB Stress Oxygen limitation Bacillus amyloliquefaciens FZB42 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 9.164048822 8.887579137 8.981995556 8.718583098 8.737104654 8.630036107 9.1322004 8.884369324 8.921193115 9.082133331 8.921099663 8.92699196 15606685 cap virulence capsule Aquifex aeolicus VF5 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Aquifex;species:Aquifex aeolicus; 8.642106061 8.856376827 9.111947531 8.118564846 7.970942412 8.163735228 7.323023913 7.810545792 8.081782815 7.751280361 7.710078044 8.417993302 177841041 amyA Carbon cycling Carbon degradation Starch Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 8.892050931 8.81705111 8.810424406 8.831643445 8.851277468 8.597676231 8.744440499 9.025167455 8.657915657 8.657348229 8.686476146 8.589573365 197341081 ChnA Organic Remediation Other Hydrocarbons Streptomyces sp. SPB74 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.692850352 8.661055282 8.794997816 8.331113597 8.236332332 8.283797618 7.876623539 8.34841428 8.261790033 8.167644235 8.310097125 8.392833531 148254829 SilA Metal Resistance Silver Bradyrhizobium sp. BTAi1 9.271965791 9.404257219 9.945835235 9.54780308 9.671110241 9.428283758 9.390123218 9.716742457 9.729635687 9.581935544 9.429700358 9.306773017 148502359 vanA Carbon cycling Carbon degradation Others Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.921274394 9.074515153 9.486865605 8.537397886 8.486465974 8.512898114 8.383776978 8.639925396 8.165766624 8.640087402 8.652122158 8.895246264 187723584 CopA Metal Resistance Copper Clostridium botulinum B str. Eklund 17B superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium botulinum; 8.636095225 8.473360237 8.585567724 7.759304812 7.572700408 7.765484807 7.469199073 7.867205224 7.358076599 7.177076314 7.667782549 118473011 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 9.017629444 9.063800533 8.452414037 8.83980408 8.975288438 9.474427739 9.143718322 9.557984323 8.562331499 8.64428077 8.586538888 126461630 pcc Carbon cycling Carbon fixation Rhodobacter sphaeroides ATCC 17029 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 9.576607009 9.511927404 9.516454544 9.224432554 9.341008955 9.106962334 9.126715214 9.100732371 8.915058981 9.167013756 9.191263771 9.237820796 119715081 Catechol Organic Remediation Aromatics Other aromatics Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.50867955 8.455539844 8.755278912 8.265209577 8.003184649 8.074894445 7.984498642 8.003931473 8.085548701 8.268032042 8.128623716 8.187555499 29610213 nmoA Organic Remediation Aromatics Nitoaromatics Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 9.571247215 9.33392664 9.480797228 8.631430201 8.5014262 8.574349504 8.646464875 8.349622775 8.561961731 8.534166403 8.419288901 8.823785116 76875698 ZntA Metal Resistance Zinc Pseudoalteromonas haloplanktis TAC125 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas haloplanktis; 8.375307745 8.277875085 8.380044031 7.521178895 7.405845282 8.023869802 8.335251356 7.636785197 7.70838017 7.623421593 7.761971976 66963167 amyA Carbon cycling Carbon degradation Starch Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8.593802993 8.749633779 8.810953396 8.309887999 8.084060044 8.524740328 8.104574422 8.697957223 8.17172158 8.719025118 8.785285289 8.645813618 194335219 APS_AprA Sulphur adenylylsulfate reductase Pelodictyon phaeoclathratiforme BU-1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 8.057101941 8.159712066 7.058730365 7.632115891 7.688237615 7.6561798 7.678215554 7.504520242 7.459354325 7.885744206 91975371 pstB Stress Phosphate limitation Rhodopseudomonas palustris BisB5 8.781250973 8.522064481 8.974049999 8.859964807 9.098956558 8.775639957 8.739823631 9.316001318 8.472200722 9.155912612 9.1845114 9.542210035 5702382 TerD Metal Resistance Tellurium Proteus mirabilis 9.095836626 9.205157636 9.229749155 8.433035218 7.851252047 8.082677105 8.089026322 7.766395434 7.392196083 7.873141823 7.88342757 8.334581693 15157994 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.150138323 8.324503715 8.438106603 8.58724128 8.542924485 8.449425362 8.001842009 8.702611601 8.09601139 8.488227897 8.15939678 8.725274887 170290137 tutFDG Organic Remediation Aromatics BTEX and related aromatics Candidatus Korarchaeum cryptofilum OPF8 superkingdom:Archaea;phylum:Korarchaeota;genus:Candidatus Korarchaeum;species:Candidatus Korarchaeum cryptofilum; 8.234077949 8.247535712 7.525365948 8.136796184 8.126203083 8.258514699 7.110406628 8.185243225 7.312655374 7.414482055 8.211485999 229587649 katE Stress Oxygen stress Pseudomonas fluorescens SBW25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.597336367 8.982156219 8.584401181 8.285644225 7.935035563 8.104227823 8.538253197 8.334597469 8.142721911 8.579574356 160364322 iro virulence Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.993306386 8.241265372 7.559474469 8.372412555 8.269405647 8.284772944 8.172909836 7.928919931 8.015818313 3378444 CDD Organic Remediation Aromatics Other aromatics Novosphingobium aromaticivorans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 8.918149104 8.759815718 8.93543933 8.330170907 8.30752557 8.291014912 8.299268773 8.198679652 8.192048039 8.137234673 8.545892718 217412618 bco Organic Remediation Aromatics Aromatic carboxylic acid Bifidobacterium gallicum DSM 20093 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 9.43228694 9.381376 9.147481438 9.271849988 8.915859325 8.318052404 9.23520831 9.321368058 9.204904747 8.884497457 8.777550536 8.768934526 121588780 atzA Organic Remediation Herbicides related compound Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 8.589280512 8.472449167 8.604498965 8.608855929 8.399498395 8.745384035 8.653898514 8.636018884 8.623089442 8.377166556 8.42218687 259166455 hly virulence hemolysin Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 8.870579682 8.886953815 8.835055892 8.467470011 8.455824534 8.770235944 8.624745862 8.409311269 8.727233321 8.510572592 8.789717651 8.789901772 84393368 cda Carbon cycling Carbon degradation Starch Vibrio splendidus 12B01 7.132356539 7.197193815 7.649889435 7.259972414 6.654676984 7.456082745 7.103749017 7.373813519 71555692 akbF Organic Remediation Aromatics BTEX and related aromatics Pseudomonas syringae pv. phaseolicola 1448A 8.165664847 7.861701507 7.787695201 7.906773349 7.843189132 7.916978491 8.057725427 7.9108332 110285385 pcaG Organic Remediation Aromatics Other aromatics Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 8.37826971 8.418820179 8.460347835 8.145893625 8.260060963 8.282667995 8.17610542 8.230627892 8.473552863 8.35315029 8.48737939 8.352516981 85090607 phenol_oxidase Carbon cycling Carbon degradation Lignin Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 8.363574057 8.574853509 8.271111068 8.047092234 8.347618018 8.574283569 7.177422542 8.166895363 8.404809659 172056884 ppx Phosphorus Phosphorus utilization Exiguobacterium sibiricum 255-15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 8.420599342 8.307224869 8.438909831 8.333128576 8.275850553 7.968287111 7.733766656 8.264732373 8.037058715 8.172048734 7.879778424 8.211112841 127514259 fnr Stress Oxygen stress Shewanella loihica PV-4 8.295283489 8.181990168 8.437954794 8.120974202 8.081644259 8.00854713 8.571763844 8.530285255 8.308376759 8.5427834 8.676104433 8.422336933 90202991 TehB Metal Resistance Tellurium Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.214233467 8.44030055 7.334726189 7.827287516 8.109704798 8.233908623 7.384235672 8.237943023 7.711430433 7.838643639 8.2402502 49612611 pstC Stress Phosphate limitation Pectobacterium atrosepticum SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 8.697832098 8.580926072 8.781858819 8.355866236 8.506064776 8.32725603 7.970497048 8.113583315 7.987539193 8.346380618 8.321612265 8.427775564 110680474 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 8.07063147 8.158638193 8.113667374 8.095464503 7.81688689 7.645589971 8.123284413 8.261570188 8.153000404 8.155940914 8.026965465 111019851 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 9.574096732 9.563384035 9.586019173 9.078611736 9.06869467 8.771706806 9.241130581 9.263507758 8.921908473 9.145816011 9.226312508 9.29056988 177841578 pstB Stress Phosphate limitation Opitutus terrae PB90-1 10.68463893 10.45230264 10.41191711 10.02436805 10.05254731 9.951009885 10.14402338 9.661186234 10.34063028 9.971769825 10.18804181 9.971726618 29136509 ppk Phosphorus Phosphorus utilization Salmonella enterica subsp. enterica serovar Typhi Ty2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 8.57735259 8.649316638 8.020225343 8.230870063 8.212010169 8.19716471 8.030583561 8.57452706 7.836317798 7.992550625 7.932507356 153796273 clpC Stress Protein stress Ruminococcus gnavus ATCC 29149 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus gnavus; 8.139442435 8.150709926 7.761370705 8.230986444 8.265253569 8.128093622 8.199006598 8.618106139 146303644 tyrosine_protein_kinase_EPS Bioleaching EPS Metallosphaera sedula DSM 5348 9.115929792 8.985717718 9.228684641 8.56295842 8.493776234 8.287522188 8.059463186 7.956302314 8.35907449 8.232670018 8.029436152 8.507776575 34497008 pimF Organic Remediation Aromatics Aromatic carboxylic acid Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 8.729718098 8.923762567 8.982715705 8.157478001 8.137227139 8.311804164 8.436554632 8.025002988 8.440673099 8.266196083 8.555386264 8.195980465 30139172 phoB Stress Phosphate limitation Nitrosomonas europaea ATCC 19718 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas europaea; 9.418295728 9.619283535 9.244766735 8.980636212 8.774430824 8.918541984 8.844355911 8.64130357 8.761486398 8.843628356 8.91924798 209959695 alkK Organic Remediation Others Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 9.057092535 8.99856751 9.027921909 8.379288276 8.356189684 8.596815558 8.968298478 8.275509954 8.612851699 8.395493112 8.485734213 8.415040832 171060970 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 9.581142962 9.26499018 9.296361767 9.487467315 9.373707333 9.244893316 9.277603999 9.606406028 9.213273412 9.507670368 9.405941097 9.54270054 119693948 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium sp. KMS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 9.140041559 9.089706156 8.748726685 8.888690603 8.984218263 9.025558778 8.873624614 9.030422707 8.787620659 8.987789707 8.744925086 91779393 alkK Organic Remediation Others Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.237853869 8.433980142 8.375586936 8.048055922 7.923171983 7.725368287 7.869576283 8.085120975 8.462825271 7.78896639 7.605081507 7.923665464 5139555 pcaG Organic Remediation Aromatics Other aromatics Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 9.015473056 9.001040307 8.877698231 8.541021028 8.405763169 8.245784011 8.490997271 8.402515489 8.478039612 8.262907425 8.465529672 8.425009693 268607912 obgE Stress Radiation stress Ruminococcus flavefaciens FD-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus flavefaciens; 8.486830926 8.864506694 8.68548335 8.663519171 8.623142748 8.500605857 8.629668173 9.011897014 8.60572773 8.657866934 8.561356976 126660444 fnr Stress Oxygen stress Cyanothece sp. CCY0110 8.319137095 8.221964323 8.422367776 8.029583967 7.95600423 7.752112549 7.631360658 7.519788472 7.944840685 7.553158847 7.375489195 7.830699493 83592446 sigma_32 Stress Sigma factors Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 8.175658352 7.919196677 7.448389196 7.503661368 7.434692306 7.271092263 7.393806413 7.613873616 7.468968886 7.382241055 7.364761594 89899109 pmdAB Organic Remediation Aromatics Others Rhodoferax ferrireducens T118 8.749483754 8.606270591 8.596067171 8.237400778 8.308472137 8.062655472 8.241546972 8.77227219 8.432792244 8.818824699 8.764401445 8.684574175 194440496 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 8.573292532 8.452156559 8.648868377 7.713423206 7.865383492 7.992161564 7.928881019 7.596704295 8.414966064 7.730952539 7.652349936 7.895003352 148263562 phoB Stress Phosphate limitation Geobacter uraniireducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 8.690111033 8.54629689 8.745472014 8.233447093 8.170030519 8.075046597 8.095239889 8.229232164 7.848560906 7.978164712 8.02868565 8.135593213 70992405 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 8.121196855 8.357834188 7.411617516 7.414102003 7.919482093 8.192652423 7.338789825 8.179249762 7.665675154 7.514849645 7.503069458 163667700 sigma_70 Stress Sigma factors Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 8.606476626 8.664373307 8.660679916 7.768300714 8.195500744 8.446449636 8.822029845 7.850318921 8.786051362 8.155873863 8.12024581 8.221180025 159045869 pimF Organic Remediation Aromatics Aromatic carboxylic acid Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 9.996632266 9.853404572 9.047845203 9.092179851 9.046837829 54022641 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 8.333186523 8.460214384 8.656353959 8.020162872 8.04719931 8.363980355 8.523784656 8.127798648 8.711473198 8.058514745 8.16460578 8.049164364 217978790 pstC Stress Phosphate limitation Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 8.300680517 8.215672315 8.254983129 8.042710064 7.923319523 8.133013609 8.337699569 8.168757225 8.151826713 7.964243813 8.21040941 163760183 glnA Stress Nitrogen limitation Hoeflea phototrophica DFL-43 8.287843236 8.235712732 7.812458504 7.698228396 7.588970777 7.608084254 7.807016608 7.748631585 7.827603765 7.647386276 7.581631218 262038813 obgE Stress Radiation stress Leptotrichia goodfellowii F0264 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteria;order:Fusobacteriales;family:Fusobacteriaceae;genus:Leptotrichia;species:Leptotrichia goodfellowii; 8.968085143 8.776011034 8.476424355 8.863728095 8.573025902 8.351687075 8.752899025 8.917310246 8.436346439 8.773451005 8.765111997 8.279759635 118762452 tftH Organic Remediation Aromatics Chlorinated aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.129503451 8.186453459 7.808209238 7.704977683 7.930148715 8.05952599 7.808351753 8.145791128 7.858718169 7.853074553 7.915960842 2632242 ahpC Stress Oxygen stress Bacillus subtilis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 8.362616138 8.571537819 8.43351584 8.001139595 7.924398657 7.928644001 7.863795607 7.310323024 7.870011265 7.762239866 7.609034816 8.225693787 106885867 mannanase Carbon cycling Carbon degradation Hemicellulose Clostridium phytofermentans ISDg superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium phytofermentans; 9.235462496 8.972250658 9.30887118 8.336939138 8.261606985 8.250246428 8.253735697 7.994156977 8.310872859 8.210198744 8.686980933 148557472 gyrB other category gyrB Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.12562159 8.036790074 7.800821039 7.730523443 7.893789603 7.79203127 7.796592541 7.863056298 8.037775288 8.012185356 7.744534762 149180533 SMR_antibiotics Antibiotic resistance transporter Bacillus sp. SG-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 9.714113818 9.669116729 9.925709513 9.250851815 9.156385278 9.107541407 8.800132569 8.718911497 8.553122914 9.111017625 8.992832357 9.186168085 39575285 iro virulence Bdellovibrio bacteriovorus HD100 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 8.59580481 8.403911223 8.764314258 7.913626495 7.905575717 7.70838287 7.889759261 8.235492325 7.829663711 8.15563446 8.000218755 8.249044791 252124402 sigma_24 Stress Sigma factors Corynebacterium matruchotii ATCC 14266 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium matruchotii; 8.713493502 8.440006508 7.640768288 7.875926017 7.887919488 7.859438045 7.928833196 8.046792945 8.039034919 7.926550705 8.018912156 242130560 iro virulence Dickeya dadantii Ech703 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 9.89390828 9.611890184 9.711556284 10.30085813 10.209212 9.988224427 9.995483489 10.10867965 9.662897798 10.0462966 9.946218859 9.802723625 133909249 gyrB other category gyrB Saccharopolyspora erythraea NRRL 2338 8.149819168 7.86131715 8.017275581 8.142424604 8.148059284 7.762178985 7.928002376 7.987966174 8.097696214 7.912896588 8.148484911 7.296491095 89350026 tfdA Organic Remediation Aromatics Chlorinated aromatics Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.779339226 9.060081638 8.94820431 8.970948437 9.131506865 8.912532188 8.931761154 9.208077718 8.957711601 9.194895771 8.897131802 9.127652649 85823564 ZntA Metal Resistance Zinc Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 9.309806564 9.226236182 9.33659071 8.627222583 8.50848255 8.565359981 8.484100466 8.613033123 8.445707047 8.480434143 8.585801077 8.937079999 256421658 sigma_24 Stress Sigma factors Chitinophaga pinensis DSM 2588 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 8.562666142 8.108896577 8.544047062 8.411868766 8.027272955 7.817464302 7.867767796 7.982932382 8.380045307 8.044029018 7.816417532 227347540 sigma_70 Stress Sigma factors Corynebacterium pseudogenitalium ATCC 33035 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium pseudogenitalium; 8.698635849 9.009508952 9.133557998 9.032407437 8.999013918 8.91692716 9.229015895 9.165880974 9.069038565 9.444237068 9.049253294 8.960099622 167646248 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 10.06772693 9.892399658 9.776623264 9.282509651 9.931613373 10.08069632 9.108950372 10.14736881 9.540282233 9.874038429 9.762956564 77378525 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.226504207 7.824142791 7.56909304 7.816848057 8.009271485 8.000979834 8.27907272 8.126375791 8.02988137 8.204182258 8.154104026 229611232 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.2712275 7.422277628 7.523900281 7.307380818 7.104386745 7.515490926 7.353120304 7.380723776 7.36524099 91690340 rubisco Carbon cycling Carbon fixation Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 10.02138662 9.764152858 9.848570676 10.311917 10.10352893 10.02288525 9.789028162 10.4936405 9.800842175 10.02863101 10.02105191 9.724959899 219994700 TehB Metal Resistance Tellurium Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 8.302991629 8.453187179 8.623751038 7.92962305 8.088496443 7.854091198 8.278736035 8.431307211 8.324550633 8.116216493 8.391561939 170777715 ppx Phosphorus Phosphorus utilization Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 10.36027353 10.48824312 10.36905314 10.37817718 10.40669132 10.18367985 10.54910244 10.79079132 10.79462093 10.72826228 10.3869972 10.66354002 189334655 MATE_antibiotic Antibiotic resistance transporter Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 9.080855711 8.775583221 8.679567883 9.154725162 9.122006693 8.980880028 8.772073859 9.476849268 8.982971198 9.071055385 9.073141003 8.751188521 114777111 phoB Stress Phosphate limitation Mariprofundus ferrooxydans PV-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Zetaproteobacteria;order:Mariprofundales;family:Mariprofundaceae;genus:Mariprofundus;species:Mariprofundus ferrooxydans; 8.28172706 8.149322717 8.42598584 8.340322109 8.446502741 8.195660478 120598433 Arylest Organic Remediation Aromatics Other aromatics Shewanella sp. W3-18-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 8.488205462 8.480499958 8.521681933 8.424219858 8.397204395 8.416001114 8.375541114 8.333525981 8.418080794 8.206678019 8.372617751 8.291605221 114314935 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Granulibacter bethesdensis CGDNIH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 8.526867891 8.590829796 8.483948954 9.04579226 8.319956384 8.086274448 8.659168108 8.609972988 8.672302891 8.353557322 8.512305832 8.211852188 88817073 ChrA Metal Resistance Chromium Pseudoalteromonas tunicata D2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas tunicata; 8.526586371 8.715750989 8.833337537 8.009073231 7.819801291 8.038902876 8.020262194 7.610827225 8.464163384 7.728249842 7.923164678 7.957862166 20278795 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 9.037858252 8.513603886 8.697430786 8.238351996 8.228772482 8.150224237 8.27128979 8.092821725 8.314215991 8.08646099 8.027651427 8.233394365 154251283 fnr Stress Oxygen stress Parvibaculum lavamentivorans DS-1 8.437089809 8.357533043 8.163537917 7.845340677 7.907145248 7.854405176 7.865474413 7.410920381 8.234607863 7.748040935 8.020169624 7.725695217 56908040 alkH Organic Remediation Other Hydrocarbons Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 8.91393139 9.140190593 9.102541662 8.39990514 8.352677769 8.237341525 8.195063182 8.226952659 8.284192099 8.202964245 8.38501407 218750998 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.408244252 8.581863878 8.036323165 7.944493061 7.597134532 7.800397157 8.044148762 7.376979971 7.994883493 7.847506216 7.868497135 7.589706844 163841990 linC Organic Remediation Pesticides related compound Renibacterium salmoninarum ATCC 33209 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Renibacterium;species:Renibacterium salmoninarum; 9.708940799 9.68674102 9.93398732 8.967699647 8.9626774 9.076309021 9.662035209 9.663415058 8.63612855 9.375305353 9.446776711 9.415778067 11078877 gyrB other category gyrB Pseudomonas asplenii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 9.261687076 9.099308591 9.144697242 8.449971939 8.301381251 8.183451378 8.160361845 8.276957513 8.462056914 8.244846109 8.12122829 8.629492686 38200740 pstC Stress Phosphate limitation Corynebacterium diphtheriae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium; 9.245563293 9.385994894 9.356716471 8.567673812 9.247062156 8.753507487 9.381891075 8.843692384 8.980041007 264677760 sigma_24 Stress Sigma factors Comamonas testosteroni CNB-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.886052091 9.039831536 8.978605475 8.355536211 8.727465288 8.58826188 9.027309534 8.095974027 8.946620051 8.463304933 8.536778788 8.594582845 29607464 linB Organic Remediation Pesticides related compound Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 9.257975023 8.951285856 9.061684484 8.330787433 8.420619662 8.53194769 8.592050259 8.264516345 8.631880143 8.463106244 8.515101644 8.488835057 83310112 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Magnetospirillum magneticum AMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 8.210356379 8.456660276 8.342267036 7.945064564 7.865291664 8.084707358 8.067905544 7.799077241 7.903879011 7.726942997 7.634220058 7.675333593 161785170 ahpF Stress Oxygen stress Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 8.597587739 8.351949274 8.492208472 7.950804752 7.953215536 7.954911974 8.164380653 8.28142557 8.192718391 119376225 pimF Organic Remediation Aromatics Aromatic carboxylic acid Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 9.769825711 9.790680695 9.675882965 9.226223813 9.190935162 9.004345709 9.183253419 9.333755317 9.16276545 9.360532993 9.277324349 9.455351504 89053834 bphA Organic Remediation Aromatics Polycyclic aromatics Jannaschia sp. CCS1 8.422692919 8.204918347 8.295553565 8.22026539 8.129136988 8.045230816 8.482714533 8.049479663 8.333219319 8.176266095 8.18270154 83404766 nirS Nitrogen Denitrification uncultured organism 8.163272266 8.283959403 8.338979658 7.993825621 7.915774478 8.138631533 8.662141148 8.462147811 8.355839889 8.310169682 8.530858612 8.492786667 226913011 phoB Stress Phosphate limitation Clostridium sp. 7_2_43FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 9.134235114 9.026112192 9.112852804 8.238943965 8.042038725 8.065629776 8.095394111 7.626457556 7.895278146 7.924087264 8.305694855 160936566 pstS Stress Phosphate limitation Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 8.539463664 8.492850607 8.315942718 8.270173718 8.310787503 8.424844884 7.746127867 8.475154996 8.241662161 8.569926427 7.664373203 119671769 alkK Organic Remediation Others Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8.165755048 8.135117664 8.149243021 7.788520797 7.909843524 7.719838722 7.549337744 7.907838093 7.781369951 8.026792669 8.020286673 7.796182019 91795547 pmdAB Organic Remediation Aromatics Others Chromohalobacter salexigens DSM 3043 9.08626473 9.204298108 8.939535821 8.586943015 9.162131032 9.16667614 9.332667572 8.21747097 9.171466821 8.301949792 8.802456486 8.452350996 73534006 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 9.076139925 9.065812917 9.038420278 8.440661221 8.343353106 8.384766295 8.485518311 8.268329547 8.446113351 8.158640209 8.27763663 8.518312811 167350417 silC Metal Resistance Silver Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.641785463 8.766198948 8.804648726 8.062725341 7.911195154 7.967124231 8.211284796 7.714060586 7.941320953 7.861576747 8.153895652 114537544 nagG Organic Remediation Aromatics Aromatic carboxylic acid Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 9.218765787 8.777407906 8.884080377 8.814072873 8.512564576 8.45868601 8.694218214 8.564336926 8.59574498 8.472180423 8.755449494 8.619980645 148259933 NADH_quinone_oxidoreductase Bioleaching Electron transport Acidiphilium cryptum JF-5 7.256048366 7.523821831 7.953070095 7.749328755 7.923357532 7.842404078 7.79501921 7.597445945 7.598479655 126007913 ferredoxin_oxidoreductase Bioleaching Electron transport Ferroplasma acidarmanus fer1 8.440710144 8.31862063 8.53410382 7.906340702 7.895390166 7.809874322 7.680072457 7.733185584 8.283550091 7.75591841 7.697504747 7.88451064 218243698 pstB Stress Phosphate limitation Thermus aquaticus Y51MC23 9.083852892 9.061595947 9.306457476 8.479261871 8.814046565 8.589793171 8.468705632 8.015272649 188022272 nrfA Nitrogen Dissimilatory N reduction Providencia stuartii ATCC 25827 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia stuartii; 8.034994996 8.070386103 7.737698231 7.72476064 8.126193528 8.165101492 7.946131381 8.302518719 8.131281978 7.730913224 7.999392559 90196661 phn Organic Remediation Herbicides related compound Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 7.97166236 8.419324696 7.555769208 7.60948866 7.830572401 7.172389403 7.498273712 7.136892952 7.942440445 146415312 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Pichia guilliermondii ATCC 6260 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Meyerozyma;species:Meyerozyma guilliermondii; 8.303744524 8.301976615 7.52205803 7.794445593 7.655930976 7.31861144 7.414980464 7.478318974 7.281245445 7.504306759 149924069 pulA Carbon cycling Carbon degradation Starch Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 9.148211824 9.147969576 8.974843749 8.564639267 8.505763687 8.3831883 8.607943002 8.523408585 8.87151147 8.430273979 8.55606716 8.47983686 46581228 tutFDG Organic Remediation Aromatics BTEX and related aromatics Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 8.334343724 8.31406134 7.850275249 7.404472395 7.635836273 8.159017334 8.169675621 7.677068557 8.335299648 7.727772422 7.70007239 7.802436395 26278720 narG Nitrogen Denitrification uncultured bacterium 8.415700049 8.528411732 8.368969092 8.595447172 8.406964228 8.245710152 8.228822335 8.737319648 8.448960856 8.706256861 8.673810507 8.560172511 99083045 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.010214557 7.80596718 7.967513043 7.804065883 7.555136058 7.52027393 7.343749452 7.228968234 7.83004445 7.394094066 7.274254956 7.480892645 168699612 Mex Antibiotic resistance transporter Gemmata obscuriglobus UQM 2246 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata;species:Gemmata obscuriglobus; 8.710393817 8.779359214 8.601071067 8.345726568 8.069957427 8.55168391 8.74926961 8.25273754 8.465402912 8.201259312 8.266022718 8.066181751 148501505 vanA Carbon cycling Carbon degradation Others Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.640592795 8.390358003 8.895599908 8.433323527 8.429467296 8.148706071 8.331802758 8.873594671 8.5086197 8.767010612 8.586253923 8.784418785 119501751 tfdA Organic Remediation Aromatics Chlorinated aromatics Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 8.083371356 7.923059584 8.344828425 7.754556416 8.019269324 7.622398001 8.041118002 7.521025807 7.883226308 7.68764351 7.59837779 7.719872545 124258127 AceB Carbon cycling Carbon degradation others Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 8.782147916 9.41275862 9.131426766 8.597493716 9.416084417 9.691001874 9.242369151 9.566259271 9.145420694 9.08297467 9.328520388 145215128 hly virulence hemolysin Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 9.518020508 9.569967546 9.993793062 8.486631163 8.554071246 8.391558596 8.580368174 9.170753515 8.438671939 8.68857439 8.513613362 62485020 bphA Organic Remediation Aromatics Polycyclic aromatics Rhodococcus opacus 9.652882271 9.822174883 10.05010013 9.853022414 9.812990492 9.613284653 10.02522376 10.47840791 9.99068467 10.29443574 10.01450402 10.37785844 226719646 iro virulence Azotobacter vinelandii DJ superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 8.826173608 8.691073694 8.577502534 8.790553661 8.821510803 8.888902145 8.929220036 8.731266089 9.047760709 9.083237502 8.918568087 53729261 ureC Nitrogen Ammonification Actinobacillus pleuropneumoniae serovar 1 str. 4074 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus pleuropneumoniae; 8.233323151 8.203791272 8.172357877 8.851440887 8.400374385 8.087166559 8.745149203 8.828575512 8.454935431 8.662076075 8.491093443 8.158267066 126707446 proV Stress Osmotic stress Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 9.080365808 8.808923229 9.115944567 9.048648891 9.232170117 8.990820614 9.180825959 9.56735181 9.303023948 9.259157322 9.201224512 9.384631116 33864291 hrcA Stress Heat shock Prochlorococcus marinus str. MIT 9313 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 7.478643817 7.696896897 7.726603256 7.432871437 7.087813073 7.838814084 7.328002689 7.480789158 7.449308462 61220987 Catechol Organic Remediation Aromatics Other aromatics Ralstonia sp. SJ98 8.629804679 8.656033993 8.288315655 8.513344426 8.557477657 8.535246703 8.246035735 8.312495637 8.705599139 8.486850328 94310714 B_lactamase_C Antibiotic resistance Beta-lactamases Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.069964867 8.175250496 8.232076962 8.070563687 8.100167884 7.901519601 7.806651009 8.066212406 8.152862992 7.966889944 7.992629591 8.119743056 227062034 hrcA Stress Heat shock Thermobaculum terrenum ATCC BAA-798 superkingdom:Bacteria;genus:Thermobaculum;species:Thermobaculum terrenum; 8.716460724 8.696108969 8.947297919 8.288159079 8.259791081 8.368842211 8.231395151 8.007438115 8.502848149 8.335306557 8.153267507 8.212883563 154252451 tfdA Organic Remediation Aromatics Chlorinated aromatics Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 9.062699888 9.025693757 9.242663329 8.686491862 8.56953974 8.6048768 8.57312426 8.696617627 8.525609604 8.965725588 8.926554162 9.030764185 119669488 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 9.19811171 9.184187131 9.408326244 8.745704401 8.634542659 8.556636536 8.723433657 8.5787422 8.945902062 8.434545839 8.305289765 8.64230307 154158507 CopA Metal Resistance Copper Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.451644914 8.525447546 8.686883674 9.083922053 8.985867477 8.744824928 8.63138842 9.076989917 8.357214995 8.929011009 8.912529828 8.996937842 196225022 CusA Metal Resistance Copper Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 8.411873836 8.371531496 8.604773605 7.928023229 8.114268337 8.363844306 8.667411395 8.241688028 8.698966687 8.078808778 8.264326323 8.121545248 58616377 TerD Metal Resistance Tellurium Azoarcus sp. EbN1 8.959720721 8.86897482 8.952996169 8.737764582 8.806533238 8.443321849 8.260169575 8.789671913 8.541525311 8.643220293 8.507933458 8.696417681 221736077 pstA Stress Phosphate limitation Agrobacterium vitis S4 8.872751001 8.992154851 8.725276838 8.399962758 8.196283803 8.165701204 8.107723788 8.289628769 8.384677448 8.329872662 8.348446997 8.508650463 83362219 pcc Carbon cycling Carbon fixation Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 8.660841664 8.663999993 8.928404817 8.15245759 8.233708395 8.40993431 8.287981684 8.165291585 8.145810615 8.017484588 8.146339768 8.359933124 254474355 fnr Stress Oxygen stress Ruegeria sp. R11 8.599738317 8.492532079 8.872802404 8.374355404 8.091704603 7.946647436 7.844889164 8.064976744 8.406025442 7.953344756 7.934538644 8.336928609 23127223 glucoamylase Carbon cycling Carbon degradation Starch Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 7.404243075 7.31739442 6.796047892 7.317725559 255048659 grpE Stress Heat shock Neisseria sicca ATCC 29256 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria sicca; 8.898019372 9.140056502 9.070105399 9.063105492 9.398901678 9.609276448 9.248169062 9.570866883 9.3011303 9.090091276 9.402283659 9.10456157 116334280 ctsR Stress Protein stress Lactobacillus brevis ATCC 367 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus brevis; 8.395217385 8.43932617 8.276086353 8.144884039 8.003216449 8.580231158 8.738916797 8.505132935 8.664317858 8.463782613 8.719729013 8.52082928 63029731 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9.029260456 8.924931743 9.00771064 8.51590771 8.356924865 8.240115076 8.06503122 8.128415362 8.557385914 8.183338563 8.09544959 8.39159485 220718432 ChrA Metal Resistance Chromium Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 9.852609655 9.936975752 9.827145465 9.396117323 9.301036194 9.556355782 10.15291799 9.776137249 10.17611463 9.594700338 9.696430748 9.509272328 148253609 atzA Organic Remediation Herbicides related compound Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.393869574 8.357723252 8.33952174 8.308097311 8.124760094 7.955500539 8.168322219 8.216935152 8.534776091 8.126584627 8.009944645 8.069963447 268326021 glnA Stress Nitrogen limitation uncultured archaeon 9.195610883 9.305632967 9.402887205 9.095096812 9.192839596 8.803611408 8.894155269 9.759339836 9.180189484 9.645053497 9.730690337 9.546604928 86751169 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.00432984 8.901077454 8.825768108 8.750053394 8.432523627 8.386488201 8.570482069 8.825943586 8.858795385 8.574872894 8.920681729 134265840 narJ Stress Oxygen limitation Geobacillus thermodenitrificans NG80-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermodenitrificans; 7.975632622 8.399862253 8.45730448 8.225317746 8.401140962 8.249727912 8.442641863 8.908824488 8.900906858 8.749535568 8.360807075 8.674522757 62003517 narG Nitrogen Denitrification uncultured bacterium 9.567269892 9.216125349 9.098232221 9.602042765 9.536568882 9.277895982 9.438706069 9.356924155 9.271624528 9.349510126 9.385059842 9.161703339 251797599 ara Carbon cycling Carbon degradation Hemicellulose Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 8.682423628 8.561079107 7.948057783 7.769135355 7.913216522 7.599525459 7.307762881 7.997200953 7.584141385 7.6049707 8.042848752 121552130 pimF Organic Remediation Aromatics Aromatic carboxylic acid Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 9.016321779 8.74581891 8.552037844 8.197270149 8.542301223 8.387738846 8.472618627 8.446398775 8.814159087 7.981561792 8.151924913 8.102612294 239906805 Tet Antibiotic resistance other Desulfovibrio magneticus RS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio magneticus; 8.480126426 7.998554364 8.526303381 8.523464941 8.308211579 8.231753227 8.278536143 8.203487589 7.990930429 7.876548859 8.022999399 145021058 tftH Organic Remediation Aromatics Chlorinated aromatics Magnaporthe grisea 70-15 8.433336124 8.551787993 8.217266682 8.163168684 8.214850013 8.053487744 8.674102323 8.223281937 8.534782372 8.072916178 106882805 phn Organic Remediation Herbicides related compound Psychromonas ingrahamii 37 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas;species:Psychromonas ingrahamii; 7.772490494 7.889838912 8.175627427 8.415192764 8.263346045 8.253300993 8.479768924 8.233128939 8.416416602 110825675 pcpE Organic Remediation Herbicides related compound Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 9.808646627 9.462670564 9.648844033 9.589304062 9.610932467 9.447068237 9.514975451 10.00946207 9.619200778 9.777312149 9.636383639 9.684228386 86566407 ureC Nitrogen Ammonification Frankia sp. CcI3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 9.2285901 9.568714743 9.108724665 8.629998141 9.410594764 9.651562002 9.033985329 9.539992146 9.23386948 9.289793374 9.217976727 113867992 fnr Stress Oxygen stress Ralstonia eutropha H16 9.79664943 9.703690906 9.848548884 8.988232124 9.012082346 9.010724844 8.68806351 8.844088763 8.845960755 8.97110346 9.262785884 156072118 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 8.090318323 7.960580934 7.35412595 7.82749207 7.749033894 8.352319575 7.487569163 7.59970431 85081332 nitA Organic Remediation Aromatics Other aromatics Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 8.343459347 8.630019763 7.885202111 7.711578607 8.065448641 7.343754144 7.184758793 7.282907164 7.548087285 7.710610452 167840552 nagG Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia thailandensis MSMB43 8.96494155 8.698050573 8.539918756 7.337838061 6.946350414 8.427417265 8.86385934 7.766376613 7.807253551 8.33492874 7.808502438 229207531 sigma_24 Stress Sigma factors Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 9.00074834 9.168659635 9.061952455 8.36853412 8.517481756 8.841707249 8.965479547 8.713770624 8.844046499 8.752389326 8.568037417 8.901947768 158424255 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 8.934963847 8.637461767 8.787515465 8.954216519 8.562029496 8.380042418 8.825751301 8.907337807 8.898469181 8.905475027 9.0312273 8.466694217 117924789 phoB Stress Phosphate limitation Magnetococcus sp. MC-1 superkingdom:Bacteria;phylum:Proteobacteria;genus:Magnetococcus; 8.480150991 8.271014842 8.69725856 7.619225795 7.743628969 8.050497623 7.853857775 7.617489269 8.41168639 7.872454166 7.870357882 7.961200087 92116510 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 8.586845909 8.768482341 8.506238857 8.248676065 9.008403074 9.349363455 8.974698398 9.126473482 8.715098009 8.546327917 8.682984302 67922889 nifH Nitrogen Nitrogen fixation Crocosphaera watsonii WH 8501 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Crocosphaera;species:Crocosphaera watsonii; 9.163664205 9.023232361 9.163684416 8.962835693 8.911195271 8.708555468 9.260822323 9.186926499 8.886022458 9.168731762 9.180966804 9.108610983 209518780 nitA Organic Remediation Aromatics Other aromatics Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.811987119 8.961142941 8.589389408 8.811154195 8.804868139 8.410436442 8.723507128 8.794211661 8.740477192 8.738651557 8.817490396 8.447560028 214043561 gyrB other category gyrB Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.844655561 7.72465296 7.50228703 7.682693007 7.643298371 7.567711417 7.413657207 7.434324907 238759193 ureC Nitrogen Ammonification Yersinia aldovae ATCC 35236 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia aldovae; 8.933267444 8.955444376 8.99807724 8.52101136 8.186576595 8.070816366 7.99896518 7.93984773 8.256851044 8.21731821 8.447806794 110285187 nmoA Organic Remediation Aromatics Nitoaromatics Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 8.167347046 8.203236493 8.24063057 7.358929869 7.402682766 7.345741446 7.582097517 7.111381157 8.063684453 7.182455121 7.648728947 7.242596338 167033176 vanA Carbon cycling Carbon degradation Others Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 9.012017958 8.947676841 8.888443518 8.263442127 8.254138395 8.460110639 8.870878679 8.013074551 8.671597507 8.388124291 8.257035656 8.394861745 171324068 CopA Metal Resistance Copper Geobacillus sp. WCH70 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.895918526 8.691465405 8.97930727 7.978071086 7.968046961 7.70590474 7.214809439 8.200395968 7.916096511 7.807903077 8.021124802 170181188 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 8.632034988 9.003448842 9.02243204 9.170773207 9.159781376 8.80318801 9.364123247 9.74609963 9.026150581 9.541057166 9.174708288 9.511998991 111151694 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 8.570294656 8.441769946 8.616576747 8.359438028 8.28071207 8.148610661 8.316571304 8.402444913 8.258076827 8.242562602 8.200334374 8.06572917 119957191 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.593386058 8.191795441 8.571415587 8.330351584 8.109934813 8.080937753 7.955695126 8.084195853 8.291349041 7.87076591 7.666313435 8.146126374 206896194 glnA Stress Nitrogen limitation Coprothermobacter proteolyticus DSM 5265 9.292055172 9.206226761 9.378612247 8.736025433 8.419523138 8.496424753 8.375909391 8.342670759 8.380476088 8.397007158 8.50580423 8.8814186 77385277 katA Stress Oxygen stress Pseudomonas fluorescens Pf0-1 9.108699413 9.227204967 9.099428849 8.707280817 8.648641881 8.632915759 8.622231357 8.859763362 8.878110465 8.675052411 8.486175028 8.804308788 259169062 narH Stress Oxygen limitation Lactobacillus antri DSM 16041 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus antri; 8.902116549 8.779405995 8.846450672 7.795542882 7.846717424 8.102210517 8.055068924 7.718088987 8.068599054 8.147652787 8.256619912 8.387439139 223481905 atzA Organic Remediation Herbicides related compound Alcanivorax sp. DG881 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 8.313074309 8.244066066 8.169319277 7.906942067 7.708753177 8.114390215 8.437166352 8.320673933 8.103388471 8.21281792 8.366020644 116634120 narG Nitrogen Denitrification uncultured bacterium 8.489431971 8.257944326 7.498875101 8.041048601 8.14755758 8.196599933 7.188208397 7.925329503 7.858597371 7.86935223 118424365 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.984042839 8.544286662 8.878496419 9.010264388 8.680672859 9.012954005 8.66760549 8.391935001 8.808888415 8.859469256 8.673666197 164687321 fnr Stress Oxygen stress Clostridium bartlettii DSM 16795 8.154278285 8.216319769 115422714 ZntA Metal Resistance Zinc Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 8.433198722 8.543194448 8.48751592 8.449187404 8.391283395 7.949082822 8.127567185 8.450819435 8.125841745 8.594756315 8.44937889 8.436568738 148498487 tfdA Organic Remediation Aromatics Chlorinated aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.53330605 8.202283445 8.407685096 7.780379221 8.260134318 8.399768566 8.047889687 8.125418743 8.020400063 8.143385172 8.338085277 7.900085175 241879697 hydrogenase Energy process Energy process Desulfovibrio vulgaris RCH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 9.297435838 8.21987441 8.476003255 8.331635298 8.074330912 7.956057088 8.16232118 8.011117177 8.471866484 8.027951549 7.912112328 121609738 catechol_B Organic Remediation Aromatics Other aromatics Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 8.131595516 8.295419445 8.278026715 8.324154594 8.319453825 8.314136666 8.073480375 8.361546903 8.410233498 8.406155376 8.369439547 8.087608824 43952 xylA Carbon cycling Carbon degradation Hemicellulose Klebsiella pneumoniae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella; 9.446359505 9.248227122 9.313249614 8.752974626 8.804186585 8.879856041 8.952065641 8.630970848 9.03403786 9.065485187 9.090566393 9.39239392 156144885 phytase Phosphorus Phosphorus utilization Kodamaea ohmeri superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Kodamaea; 7.328535395 7.050179426 7.125718312 7.092033912 187921394 pcaG Organic Remediation Aromatics Other aromatics Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8.853319476 8.702068574 8.508155294 8.547214333 8.266599708 8.220433946 8.542708144 8.22917405 8.767326252 8.397802249 8.493541331 8.344356436 86357130 ppx Phosphorus Phosphorus utilization Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.371332649 8.288199051 8.189325343 8.094248945 7.84133603 8.067551655 8.367359535 8.334474954 7.992598811 7.976886718 7.863367936 110589272 dsrB Sulphur sulfite reductase Endoriftia persephone 'Hot96_1+Hot96_2' 7.746996795 7.631245669 7.781718985 7.059006402 7.78465311 7.624867862 7.591330479 7.604870963 7.56594737 112464191 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.044692164 8.334335308 7.420762504 7.235793596 7.730980697 7.771414459 7.369996561 7.688753888 7.421537568 7.633924062 7.629072123 145216953 CopA Metal Resistance Copper Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.547354836 8.305865308 8.379939958 8.058651673 8.270604768 8.44931352 8.153588086 8.547295547 8.090216396 8.199936446 8.566865029 8.225251425 163795599 ArsC Metal Resistance Arsenic alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 8.645334204 7.988734462 8.339728641 8.438992109 8.214966584 7.605769211 7.81121131 8.357515416 8.466616335 8.268212399 8.312320111 8.077166326 9295200 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.18580083 7.3867434 118194293 pstB Stress Phosphate limitation Cenarchaeum symbiosum A 8.087614559 8.205795107 7.976702166 7.951604608 8.362856175 8.209252078 8.162900485 8.583586449 8.021944172 8.082150254 7.932281608 157804726 APS_AprB Sulphur adenylylsulfate reductase Pelodictyon clathratiforme superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon; 8.924064114 8.785593459 9.131333029 8.575767868 8.560296233 8.258096243 7.951601707 7.671310149 8.054716551 8.25155368 8.181439552 8.307712769 255299083 pcc Carbon cycling Carbon fixation Corynebacterium tuberculostearicum SK141 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium tuberculostearicum; 8.808535659 8.804395944 8.946916872 7.966943942 7.73396123 8.205154665 8.337482569 7.862147026 8.412822781 7.795087896 7.964901225 8.31430441 226090292 sigma_24 Stress Sigma factors Gemmatimonas aurantiaca T-27 superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 8.876870151 8.72296547 8.594609984 8.548217226 8.520796461 8.438996108 8.535762999 8.812860307 8.72577842 8.773683359 8.688514394 8.735831388 139003913 integrase_tyrosine Bacteria phage REPLICATION Ralstonia phage phiRSA1 order:Caudovirales;family:Myoviridae;genus:P2-like viruses; 8.450320484 8.229911427 8.230247184 8.03074339 7.939221123 7.690464126 7.945279827 7.868867495 7.565627171 8.000080569 261312373 glnA Stress Nitrogen limitation Mannheimia haemolytica serotype A2 str. BOVINE 9.523178896 9.433363412 9.680744504 8.830731009 8.544778132 8.901593306 8.66335755 8.430190049 8.889054502 8.639564651 8.695030988 9.076733546 283947205 sigma_24 Stress Sigma factors Conexibacter woesei DSM 14684 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Conexibacteraceae;genus:Conexibacter;species:Conexibacter woesei; 8.303118817 8.432429597 8.309190985 8.433643196 8.654794428 8.403647925 8.505503555 8.906346553 8.399366064 8.783687311 8.600907955 8.597246526 50871758 Arylest Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 8.507133517 8.43531567 8.627082474 8.031745606 7.905775234 7.958381681 7.784235535 7.905246784 8.055333642 8.017661316 7.843967329 8.107513528 56799105 catechol_B Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 8.467419589 7.660292257 8.210603231 8.140643729 7.99159646 7.864194743 8.060268517 8.067870246 7.752366349 7.815077935 7.515627866 134099082 ureC Nitrogen Ammonification Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 9.363686168 9.441538836 9.494183853 9.502646028 9.39121874 9.322696657 9.976042597 9.632657698 10.01602949 9.872599285 9.950365604 1653312 vanA Carbon cycling Carbon degradation Others Synechocystis sp. PCC 6803 8.973972918 8.494393276 8.484503119 8.313317064 8.616960151 8.539761141 8.51052718 8.989742251 269099343 phoB Stress Phosphate limitation Thermanaerovibrio acidaminovorans DSM 6589 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Thermanaerovibrio;species:Thermanaerovibrio acidaminovorans; 8.491224388 8.166330334 8.367020996 8.289437605 8.650113128 7.930872974 8.449314668 8.21615491 8.606974041 8.019444055 154089492 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Parabacteroides merdae ATCC 43184 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides merdae; 8.429654482 8.021404262 8.428751402 8.079709952 8.489531247 7.727844475 7.927002959 8.104782323 8.020826538 163841198 glnA Stress Nitrogen limitation Renibacterium salmoninarum ATCC 33209 8.263150724 8.573634572 8.44175161 8.311496696 8.208364511 8.068909986 8.075850478 8.066641695 7.925079689 8.138099832 7.889710752 2644993 dnaK Stress Heat shock Planctomyces maris 8.263445876 8.464810194 8.651699167 7.968285299 7.861323261 7.884176618 7.625725408 7.391458994 8.027469444 7.736003112 7.900363445 8.161243393 124261129 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 8.505968425 8.591777181 8.71950521 8.228995256 8.440696787 8.091245393 7.96121842 8.122080207 8.392840191 8.574015972 8.475156278 8.544948942 75992419 phtB Organic Remediation Aromatics Aromatic carboxylic acid Terrabacter sp. DBF63 9.540717359 9.646995728 9.616895371 9.163331649 9.058080039 8.895109758 8.829535611 9.128472048 8.908655192 9.066026263 8.941654636 9.11409678 108464954 pilin virulence pilin Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 8.753674693 8.808287111 8.962696498 8.388342132 8.264855029 8.232740329 8.360024085 8.788864293 8.717162498 8.605965443 8.501920843 8.560056183 268313944 cap virulence capsule Thermomonospora curvata DSM 43183 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora;species:Thermomonospora curvata; 8.62701777 8.846582512 8.929344886 8.385066944 8.473839505 8.690690942 9.032470127 8.508973352 8.987720819 8.763611845 8.664568374 8.834641064 206891065 cydB Stress Oxygen limitation Thermodesulfovibrio yellowstonii DSM 11347 superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Thermodesulfovibrio;species:Thermodesulfovibrio yellowstonii; 8.850675737 8.53010067 8.560463113 8.169242914 8.581361787 8.11128577 7.783527104 7.821840452 8.137893734 88813002 pilin virulence pilin Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 8.485853781 8.54297717 8.165322077 7.964810329 8.3745235 8.285751687 8.016149918 8.352367453 8.297052941 8.289289107 8.35809201 2822273 bphF1 Organic Remediation Aromatics Polycyclic aromatics Pseudomonas putida 8.717120354 8.473063714 8.68691151 8.559980887 8.277627032 8.388240883 8.110499865 8.20632977 8.264583829 8.367802326 8.261902002 8.639145076 262340153 pstA Stress Phosphate limitation Vibrio sp. Ex25 9.266792991 9.12010271 9.165778239 8.744063656 8.582234455 8.532760622 8.324197418 8.429397598 8.661614663 8.383237692 8.304120104 8.819645479 71737876 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 8.759770371 8.548695996 8.273605583 8.442878082 8.177970762 8.458155298 8.802754588 8.543620211 8.358771767 8.051489837 8.227974585 8.120662728 149279372 catB Organic Remediation Aromatics BTEX and related aromatics Pedobacter sp. BAL39 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter; 8.317644115 7.797233413 7.912702556 7.36147196 7.798334216 7.822938718 7.426961881 7.801932906 7.197111966 7.323841797 7.444708801 77964834 pap virulence adhesin Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 9.143909352 8.947400027 9.304477262 9.167573568 9.152910731 8.858900238 9.051277082 9.181139066 9.033699098 9.273227684 9.002909095 9.029637076 159881072 sigma_38 Stress Sigma factors Hydrogenivirga sp. 128-5-R1-1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenivirga; 8.330725443 8.450012725 8.480352092 7.950929852 7.483005258 7.693464195 7.492871303 7.796249151 7.769797901 7.905346722 7.922252777 116697213 pstA Stress Phosphate limitation Syntrophobacter fumaroxidans MPOB 8.868070169 8.63691045 8.678704915 8.375368005 8.266955433 8.014192944 8.257644074 8.098586839 8.390359135 8.021916838 7.986508194 8.027778833 98977961 ArsC Metal Resistance Arsenic Sphingopyxis alaskensis RB2256 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 8.567002358 8.467348825 8.189842315 7.870434693 8.536585873 8.699798101 8.40996531 8.641875093 8.098782449 8.288206897 8.286808732 237785907 hrcA Stress Heat shock Corynebacterium kroppenstedtii DSM 44385 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium kroppenstedtii; 9.012783047 8.658588863 8.820622813 8.053891937 8.132862567 8.245114036 8.430852251 7.823806817 8.496370946 8.039229019 8.022362016 8.213990234 118718806 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 8.557575752 8.822567641 8.621055562 8.844554553 8.741332926 8.994125096 8.590087562 9.269359167 8.511761659 9.157007815 9.176073672 8.90111242 15155547 glnA Stress Nitrogen limitation Agrobacterium tumefaciens str. C58 9.103856543 9.139904277 8.98655634 8.636957101 8.345250063 8.753895227 9.09546104 8.656352884 9.512713297 8.501379396 8.155372294 8.368634659 170141779 sigma_24 Stress Sigma factors Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 10.73790781 10.64983948 10.69849891 10.26218507 10.52263779 10.61603127 10.69875772 10.50774087 10.6479377 10.74786369 10.6978388 10.8489806 158138877 narG Nitrogen Denitrification uncultured bacterium 8.374716126 8.377931884 8.633440587 8.09346028 8.073844265 7.81819948 7.98169792 7.910974612 7.997716369 8.307531276 8.128037703 7.824511945 254951809 fnr Stress Oxygen stress Dyadobacter fermentans DSM 18053 8.441519497 8.183026903 7.079602061 7.436364774 7.449682904 7.280367936 7.847863695 7.16541526 7.830584905 189464206 mannanase Carbon cycling Carbon degradation Hemicellulose Bacteroides intestinalis DSM 17393 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides intestinalis; 8.647170744 8.301697133 8.167002695 8.409112034 8.239421853 8.058797422 7.912422012 8.170986316 197118564 cytochrome Energy process Energy process Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 8.663573546 8.353243648 8.669148553 8.348444043 8.309862005 8.118233681 7.974759474 8.341575034 8.268098386 8.374901634 8.194411729 8.459660648 242804434 MFS_antibiotic Antibiotic resistance transporter Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 8.876318976 8.874052188 8.968507569 8.227348587 8.210618494 7.992157952 8.237758975 8.340626333 8.405743275 8.220430374 8.400800994 8.427728815 150401690 mcrA Carbon cycling Methane Methane production Methanococcus aeolicus Nankai-3 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanococcaceae;genus:Methanococcus;species:Methanococcus aeolicus; 8.894224912 8.741357844 9.013648331 8.262565083 8.00396933 8.205092329 8.075729715 7.903927754 7.990833628 7.824255085 8.290641428 166087375 mer Metal Resistance Mercury Microcystis aeruginosa NIES-843 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 8.829223905 8.543520243 8.391582426 7.961465574 7.938374304 7.758943765 7.551489929 7.96818021 8.099436539 8.07104359 7.808181204 7.864956411 56908484 alkH Organic Remediation Other Hydrocarbons Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 9.332590124 9.295104778 9.247193674 8.390048989 8.595522465 8.596930755 8.380659721 8.108142348 8.199622237 8.294463029 8.570897969 149189584 narI Stress Oxygen limitation Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 7.566763132 7.350958739 7.452186477 7.180777946 6.935082 7.428979486 6.78811158 7.601249101 167570734 MATE_antibiotic Antibiotic resistance transporter Burkholderia oklahomensis C6786 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia oklahomensis; 8.26521496 8.494414017 8.149719685 7.499673791 8.051961549 8.302074436 8.300709619 7.750736947 8.408331763 8.014384879 8.235529569 8.140224207 126707749 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 9.052170561 8.938670041 9.112625421 8.560083297 8.370096216 8.306215008 8.382668037 8.158473006 8.216356676 7.90143912 8.472153653 18860818 alkB Organic Remediation Other Hydrocarbons Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.694041867 8.721137797 8.681774536 8.327557937 8.166706817 8.574366259 8.892372125 8.435259148 9.039811501 8.297438916 8.369256377 8.564034557 126738622 gyrB other category gyrB Roseobacter sp. SK209-2-6 8.217765464 8.203560174 8.441991766 8.030387298 7.929117074 7.865757024 7.771136479 8.555156025 8.011763516 8.746802458 8.30060942 88062822 ArsC Metal Resistance Arsenic Rhizobium leguminosarum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 9.528710005 9.453602512 9.631278094 8.878973376 8.818571958 8.694348322 8.823638411 8.465957884 8.54199548 8.655362012 8.625094438 9.025930934 260418800 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 10.60605203 10.27779881 10.37054999 10.14152968 10.30717036 10.07145246 10.02308504 10.32058382 9.997175107 10.10207244 10.17891016 10.26737756 55771644 pstB Stress Phosphate limitation Thermus thermophilus HB8 9.013816688 8.964569875 8.992518029 8.419005651 8.42079482 8.37169658 194339726 sigma_24 Stress Sigma factors Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.363546455 8.384372609 8.699934591 8.662873414 8.241427123 8.198854694 8.783527744 8.593626703 8.566930668 8.774376793 124260399 sox Sulphur Sulphur oxidation Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 9.008014583 8.200828979 8.459465533 8.833541392 8.444887515 8.1227672 8.541506663 8.789110219 8.524878203 8.734871215 8.831450386 8.148788169 70672909 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.634404291 8.624982887 8.619649233 7.420212903 7.774602684 8.229575706 8.085544899 7.610239899 8.161483128 8.143288201 8.031922919 8.250019543 148257018 fnr Stress Oxygen stress Bradyrhizobium sp. BTAi1 10.64786799 10.34113068 10.42063115 10.02697077 10.01491969 10.00794602 10.17363664 10.40573494 10.10188536 10.25929388 10.41914384 10.4807156 89512880 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 9.917461571 9.861257915 9.698723335 9.087547936 9.298407978 9.231656107 9.686439671 9.239960394 9.781083732 9.075699524 9.068969113 9.265914574 74056902 nosZ Nitrogen Denitrification Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 8.461443476 8.821496682 8.487787804 8.312024493 9.125624498 9.327427013 8.667480538 9.196481543 8.54083276 8.429118535 8.949939349 677887 endoglucanase Carbon cycling Carbon degradation Cellulose Macrophomina phaseolina superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Botryosphaeriales;family:Botryosphaeriaceae;genus:Macrophomina; 8.568713616 8.678098369 8.73030901 7.984007979 8.759145222 8.471777601 8.643040363 9.400629123 8.506211195 8.958578916 9.017538871 8.667430007 118673628 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 9.181989097 8.845965031 9.126513931 8.497881771 8.576200567 8.507321843 8.764036319 8.392607387 8.582692821 8.444528057 8.390863395 61676002 gyrB other category gyrB Waddlia chondrophila superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Waddliaceae;genus:Waddlia; 8.488920416 7.806173594 8.15471059 7.810523429 7.608390712 7.528092706 7.998370628 7.67656378 8.016346515 7.861118217 7.706555408 7.747324188 119474993 sigma_70 Stress Sigma factors marine gamma proteobacterium HTCC2143 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.831134983 8.394025335 8.673885251 7.965886167 7.849320983 8.070241311 7.81904363 7.805383776 7.980045877 7.927484859 7.845244817 8.208190353 94552065 pilin virulence pilin Candidatus Koribacter versatilis Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 11.67004147 10.67874906 10.55522479 11.15289128 11.13383985 11.07654517 10.95442558 10.80996873 11.03412662 11.15390638 11.03717933 10.9213526 134096547 iro virulence Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 10.06434459 9.980541143 10.09955593 10.24979102 10.37856884 10.58731046 10.12438235 10.32720009 10.33296017 9.883528041 10.03829857 9.968915918 238792479 narI Stress Oxygen limitation Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 8.285675705 8.114631136 8.368409348 8.742268142 8.275454468 8.379720176 8.065509345 7.856850269 8.239246011 85109751 pheA Organic Remediation Aromatics Other aromatics Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 9.746543973 9.605127192 9.543338137 9.692653601 9.580290915 9.448193362 9.784060255 9.652197581 9.161604894 9.517562494 9.6323812 9.694942446 53721878 nmoA Organic Remediation Aromatics Nitoaromatics Burkholderia pseudomallei K96243 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 9.030905622 9.018508262 8.740000971 8.804353799 8.744754404 8.862356178 8.986468233 8.780688834 8.898929723 8.562484105 8.820746585 8.422494933 110824023 katE Stress Oxygen stress Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.604409232 8.702787189 8.622497004 8.129183938 8.220205631 8.441803544 8.548846226 8.117525603 8.28441913 8.203832967 8.20066425 8.398917079 227295574 cda Carbon cycling Carbon degradation Starch Exiguobacterium sibiricum 255-15 8.074302077 7.958021022 7.186686025 7.207891534 7.268487215 7.085640764 7.068290567 7.581707799 7.151477585 7.044484132 7.24787659 118472466 tftH Organic Remediation Aromatics Chlorinated aromatics Mycobacterium smegmatis str. MC2 155 8.799235448 8.628803375 8.821304709 8.335810855 8.353231547 8.168683646 8.473798226 8.148403352 8.502062506 8.22869346 8.607424937 219542176 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 9.227310069 9.198072592 9.185616795 8.49114355 8.462829031 8.587156705 8.72319997 8.33040523 8.553841993 8.54286933 8.344291906 8.694817672 118068510 nagI Organic Remediation Aromatics Aromatic carboxylic acid Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 7.50016191 7.412828519 7.331105836 7.181691647 7.030756873 7.438891353 7.257922964 133778506 endochitinase Carbon cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 9.847996608 9.686856399 9.892193852 9.415565315 9.367443959 9.536407849 9.4141607 9.195851922 9.838891325 9.763534752 9.846662752 9.792406051 85773958 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 8.828188888 8.696685072 8.648694789 8.279644793 8.164894411 8.282562844 8.241209039 8.182928865 8.317421659 8.312195858 8.087328434 8.508151242 251776394 ahpC Stress Oxygen stress Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.940666799 8.886290716 9.00738227 8.382570457 8.478234582 8.603533812 8.643487778 8.429126267 8.668671831 8.409847078 8.349392283 8.556574177 118433913 phn Organic Remediation Herbicides related compound Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 8.164138009 8.137293436 7.903320306 7.606349657 7.488163211 7.651951743 8.025380381 7.932978582 8.078023499 8.034060862 8.136811525 227987426 B_lactamase_C Antibiotic resistance Beta-lactamases Meiothermus silvanus DSM 9946 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 9.026336889 9.150156983 9.221947554 8.547348725 8.175701913 8.274674214 8.016663602 8.314726789 8.247679944 8.003039675 8.558777108 237905590 katE Stress Oxygen stress Uncinocarpus reesii 1704 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 8.171595033 8.223560614 8.346806324 7.757117092 8.151163305 7.815129245 7.653837845 7.993018367 8.309149183 8.194150485 7.87347625 72121690 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.35807186 8.241799411 8.593372386 8.507771913 8.71196142 8.538515617 8.742076321 9.136032561 8.574184722 8.837198867 8.662155405 8.403650004 119670634 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8.560415347 8.316310573 9.116959459 8.468237829 8.213282426 8.635215821 8.165654008 8.888783432 8.246596736 8.413183919 8.150923161 184195249 sigma_24 Stress Sigma factors Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.683707858 8.579517743 8.348012091 8.325322157 8.13952707 8.370398269 8.536806454 8.436517336 8.748738165 8.512439995 8.512313347 124002296 clpC Stress Protein stress Microscilla marina ATCC 23134 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Microscilla;species:Microscilla marina; 8.995765434 9.018496002 9.45042905 8.163597297 8.310653527 8.106811802 7.781585698 7.948191539 8.449090365 8.294864882 8.41633707 8.466307503 117996767 phn Organic Remediation Herbicides related compound Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 9.944182859 9.973470887 10.0137616 9.135672582 9.856563751 9.875855339 10.31407394 9.201082064 10.17897252 9.569993226 9.690543452 9.751741917 127513026 hly virulence hemolysin Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 8.260204625 8.101864089 8.138295793 7.94860475 7.66620737 7.709450058 7.845021828 7.619954124 8.071549403 7.655940419 7.648715688 7.582116724 109452461 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.032985249 8.24106056 7.662557246 7.451550752 7.806102322 7.7396284 7.401480828 7.729330089 7.439178507 7.458376449 15890855 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.712558759 8.860373328 8.709087399 8.20314659 8.520914936 8.379579996 8.287366691 7.825393725 8.316113564 8.281117065 8.28036706 77166331 ureC Nitrogen Ammonification Nitrosococcus oceani ATCC 19707 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 9.046931448 8.582373586 9.116719411 8.367992649 8.28298824 8.110698961 8.153099525 8.113750005 8.585658712 8.159838305 8.118161878 8.35790627 70671751 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 8.173990479 8.27228019 8.366468872 8.032353902 7.895069961 7.883327965 7.985153791 7.958234403 8.616847811 7.716150428 7.477188107 7.89770679 72121736 linC Organic Remediation Pesticides related compound Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.621676558 8.906017719 8.937153661 8.301852992 8.37295449 8.167685034 8.342173292 7.991430877 8.242770145 8.158953951 7.869301402 8.437575268 260424881 iro virulence Dialister invisus DSM 15470 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Dialister;species:Dialister invisus; 9.290799282 8.985430097 9.292649641 8.492514231 8.414025609 8.244921107 8.127287146 8.068255831 8.211499939 8.039403747 8.516411272 68204051 Arylest Organic Remediation Aromatics Other aromatics Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 9.501690726 9.363545318 9.621100116 9.072417534 8.753725587 9.049550387 8.587801282 8.475498255 8.766839839 8.773521986 8.958056866 167417520 amyA Carbon cycling Carbon degradation Starch Anaeromyxobacter dehalogenans 2CP-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 8.597194492 8.284607162 8.041396372 8.44567487 8.46018523 8.241966895 8.256291311 8.273400325 8.174638071 13093655 oxyR Stress Oxygen stress Mycobacterium leprae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.358386563 8.157391688 8.194957083 7.693331778 7.944246587 7.935381638 8.000872325 8.27288778 7.892464887 7.940296351 7.724699313 188532949 pilin virulence pilin Erwinia tasmaniensis Et1/99 8.667018718 8.585934348 8.690226742 8.136503082 7.879723354 7.957736937 7.922966296 7.656927572 7.804312273 7.693724539 8.115726645 242780044 phenol_oxidase Carbon cycling Carbon degradation Lignin Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 8.712961322 8.050188282 8.572945976 7.643045591 7.236610114 7.686813653 7.204407912 6.931125347 7.640893389 7.342014988 7.475360631 7.783218647 226318181 glnA Stress Nitrogen limitation Deinococcus deserti VCD115 9.431553103 9.720928167 9.126778525 9.444944633 9.789589185 9.999514568 10.16682266 9.739318131 9.818857344 9.418105879 9.556258808 9.49512528 148848937 sigma_70 Stress Sigma factors Bacillus sp. SG-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 8.137787822 8.690977159 8.727364959 7.730702713 7.796299914 7.727539698 7.395950456 7.897213369 7.842001703 8.087113275 8.171631791 7.800896219 99083455 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.978681183 8.18144707 6.97060134 7.049471576 6.915071879 6.841749779 6.775936061 7.26763675 170141342 Catechol Organic Remediation Aromatics Other aromatics Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 8.972416571 8.688862409 8.982358287 8.355315317 8.552332474 8.376426158 8.294678813 8.383633395 8.250462212 8.413887398 8.688273003 67858044 sigma_24 Stress Sigma factors Crocosphaera watsonii WH 8501 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Crocosphaera;species:Crocosphaera watsonii; 8.32024815 8.208600196 8.530878524 7.792619224 7.604852196 7.613929809 7.250001397 7.270355897 7.742996604 7.403445615 7.406685951 7.709575485 46449921 fnr Stress Oxygen stress Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough 8.92794621 9.14003477 9.280730442 8.699856089 8.521094316 8.334694259 8.517651001 8.459069093 8.30793967 8.361488565 8.742570776 219965748 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.286282898 8.681557229 8.541747619 8.284160522 8.225061048 7.98059937 8.54441451 8.500656145 8.532393765 8.43321202 8.407510884 7.985128227 158521014 APS_AprB Sulphur adenylylsulfate reductase Desulfococcus oleovorans Hxd3 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus;species:Desulfococcus oleovorans; 8.410996218 8.52108905 8.599871812 7.914137418 7.79305316 7.834911381 7.656732933 7.636446539 7.991003034 7.696008542 8.052090028 82795287 type_III_secretion virulence secretion Pseudomonas syringae pv. tagetis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 7; 8.044806128 8.36625343 8.287432289 8.224797958 7.791585759 7.856079988 8.613868467 8.262539322 8.431593548 8.279266858 8.515190356 19915122 trzN Organic Remediation Herbicides related compound Methanosarcina acetivorans C2A 8.87144435 8.582781819 8.315276675 8.982035257 8.911717858 8.68129634 8.933531466 8.785668013 8.752076161 8.383172304 8.749183806 8.337109481 154503193 tutFDG Organic Remediation Aromatics BTEX and related aromatics Ruminococcus gnavus ATCC 29149 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus gnavus; 8.3015821 8.148785682 8.040411207 7.572188693 7.688179481 7.374283249 7.665181955 7.029486171 7.358975649 7.172081622 7.196708847 7.481037367 228894261 amyA Carbon cycling Carbon degradation Starch Cellulomonas flavigena DSM 20109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 9.798464237 9.845202858 9.792266649 9.432158654 9.481068968 9.290972875 9.41282149 9.409426128 8.908393894 9.361827097 9.417705929 9.480135379 219558919 iro virulence Mycobacterium tuberculosis T17 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 8.879868767 8.954960413 8.984976394 8.501879881 8.660212822 8.148786521 8.145757882 8.022775229 8.189853018 8.226710695 8.350092114 8.56781224 169757212 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.811116525 8.671237177 8.915942261 8.745409252 8.31010888 8.278672864 7.992490888 8.149829885 8.267582006 8.510768539 20977654 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.615333715 8.458510545 8.604168821 8.554389115 9.070058647 8.827597696 8.296234421 8.960982032 8.24084958 8.70869964 8.688964275 8.868529288 261420851 pstA Stress Phosphate limitation Geobacillus sp. Y412MC61 8.575156984 8.704178021 8.56984373 8.011945294 7.799188526 7.845381811 7.560649001 7.571263081 7.975689704 7.846392972 7.93328656 7.991254067 149917513 pimF Organic Remediation Aromatics Aromatic carboxylic acid Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 9.640534411 9.302205733 8.736674769 9.872105763 10.03469043 9.999233354 9.304826023 9.864835566 8.968188998 9.82662112 9.995687905 9.247340188 85708160 oxyR Stress Oxygen stress Erythrobacter sp. NAP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 9.849322748 9.610326583 10.0149928 8.971927523 9.077312848 9.005062106 9.047484791 9.355927231 9.196022234 9.427040432 9.45885826 9.529119634 260612540 AceA Carbon cycling Carbon degradation others Vibrio metschnikovii CIP 69.14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio metschnikovii; 8.241157842 8.283831442 7.762191398 7.703957914 7.723286655 7.259680317 7.260198755 7.836301797 7.563768564 7.35922946 7.766600218 116619396 pimF Organic Remediation Aromatics Aromatic carboxylic acid Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 11.31311693 10.87040033 10.8271805 10.00177164 10.17777162 10.15651277 10.4846716 10.28901485 10.59958672 10.6063001 10.56056048 10.52794263 86748035 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.119188694 8.291100243 8.35187027 8.384928171 8.27712546 8.359636801 8.383785239 8.77454145 8.553586475 8.665661434 8.249418076 8.613271383 192292111 fnr Stress Oxygen stress Rhodopseudomonas palustris TIE-1 9.147299832 9.093759029 9.185134683 8.640403116 8.487712392 8.573497267 8.26529216 8.216399048 8.539812017 7.964476372 8.034122188 8.433324783 116804554 nasA Nitrogen Assimilatory N reduction uncultured prokaryote 8.878279797 8.771887225 9.010389232 8.234987472 8.309428322 8.013462938 8.023460314 7.883517132 7.927932477 8.062371201 7.745640025 8.493427273 149197262 CadA Metal Resistance Cadmium Lentisphaera araneosa HTCC2155 superkingdom:Bacteria;phylum:Lentisphaerae;order:Lentisphaerales;family:Lentisphaeraceae;genus:Lentisphaera;species:Lentisphaera araneosa; 8.443688769 8.313647364 8.162476003 7.833311929 7.989297428 8.289017666 8.240373644 7.785013685 7.968382304 8.00761371 7.544431705 241906389 hydrogenase Energy process Energy process Desulfovibrio vulgaris RCH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 8.645167452 8.626262059 8.855196259 8.832560522 9.180040168 8.997833707 8.71338455 9.44968669 8.590517391 9.049424637 8.850246892 9.295931866 82940315 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.443918209 8.460493285 8.781016444 7.945663575 7.775578874 8.122041888 8.608780568 8.088490846 8.471317617 7.963954399 7.873418977 7.892300531 78192807 narJ Stress Oxygen limitation Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 9.166411132 9.41746035 9.153397899 8.764841028 8.712588872 8.729132046 8.852347422 8.771136264 8.555000858 8.785556622 8.814104515 8.982241574 85860183 pilin virulence pilin Syntrophus aciditrophicus SB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Syntrophus;species:Syntrophus aciditrophicus; 9.789887924 9.743788161 9.905820807 9.367358986 9.607055663 9.408400012 9.562169092 9.768811938 9.463605735 9.819916563 9.597088364 9.795668635 239595878 endochitinase Carbon cycling Carbon degradation Chitin Ajellomyces dermatitidis SLH14081 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 9.276143989 9.208473292 9.531076708 8.739743623 8.743139664 8.674126287 8.477766552 8.278175533 8.544112778 8.460797032 8.600754449 8.777770322 169760011 cytochrome Energy process Energy process Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.412408796 8.569513592 8.558129879 7.877211684 8.007084785 8.08414859 8.561249049 8.123736526 8.639006842 8.062378696 8.107039587 8.076188484 126207588 nrfA Nitrogen Dissimilatory N reduction Actinobacillus pleuropneumoniae L20 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus pleuropneumoniae; 8.283045073 8.239036995 8.514933212 7.901004753 7.968647779 7.986930922 8.041309881 7.989425178 7.826639499 7.931516308 7.930713676 8.003937333 227491350 oxyR Stress Oxygen stress Corynebacterium pseudogenitalium ATCC 33035 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium pseudogenitalium; 8.060647981 8.156955893 8.143313906 7.858593877 7.86100279 7.887979577 8.160818519 7.747906175 8.180934126 7.699102916 7.91651629 7.61993825 222441245 glnA Stress Nitrogen limitation Labrenzia alexandrii DFL-11 8.328067515 8.490174708 8.648622473 7.995970679 7.689168831 7.443157547 7.698634046 8.04860885 8.262811807 7.914804711 7.735056886 7.862123671 183581309 gyrB other category gyrB Kocuria rhizophila DC2201 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 9.860078289 9.838041096 9.892778738 9.309422934 8.723857679 9.007246101 9.295341235 9.220250122 8.891216707 9.209938919 9.186631688 9.324706725 58581140 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Xanthomonas oryzae pv. oryzae KACC10331 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 8.067355974 7.891452856 7.536251548 7.854116476 8.022608109 7.742544473 7.920712419 7.897308729 8.033653128 7.822633666 228572716 ABC_antibiotic_transporter Antibiotic resistance transporter Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 8.092213264 8.245729039 8.311877829 8.189115648 8.20027817 8.305298405 8.266673764 8.540572868 8.4626376 145225185 chnB Organic Remediation Other Hydrocarbons Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 7.638525711 7.734130317 7.054579409 7.592897237 7.568262884 33567621 rubisco Carbon cycling Carbon fixation Bordetella bronchiseptica RB50 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella bronchiseptica; 10.12376109 9.961862276 9.969220437 8.914747188 9.069782351 9.16074181 9.521715084 9.185994419 9.692296421 9.136581431 9.278054557 9.518111188 153808537 pulA Carbon cycling Carbon degradation Starch Bacteroides caccae ATCC 43185 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides caccae; 7.92228909 8.212690975 6.814272717 7.328245957 25027689 4HBH Organic Remediation Aromatics BTEX and related aromatics Corynebacterium efficiens YS-314 8.408129756 8.262618 8.246352096 7.734180995 7.789544905 8.14430959 8.028211867 8.132964589 8.080273281 7.987646006 8.077777692 8.110885347 88812887 AceA Carbon cycling Carbon degradation others Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 8.434057077 8.646449654 8.63323493 7.810075966 7.664036351 7.667691264 7.483813257 7.75828928 7.746599603 7.621945933 7.351106497 7.849703203 1906845 exoglucanase Carbon cycling Carbon degradation Cellulose Claviceps purpurea superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Clavicipitaceae;genus:Claviceps; 7.853255916 7.755852748 7.774623734 7.939747794 8.193614515 8.166319707 8.242399514 7.832356175 7.946318219 84664275 sigma_70 Stress Sigma factors Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.794370194 8.819640934 9.145137591 8.043818822 7.947858183 8.268761754 8.010710963 8.000939926 8.113304896 8.052136192 8.291033081 165880013 exoglucanase Carbon cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 8.816785159 8.505590714 8.50679749 9.053954721 8.871129184 8.715952615 8.719958019 9.075234003 8.855336673 8.804452075 8.671351991 168705280 groEL Stress Heat shock Gemmata obscuriglobus UQM 2246 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata;species:Gemmata obscuriglobus; 7.494631801 7.38632694 7.204129318 7.420245119 7.66886108 7.512901467 7.702291267 167843756 sigma_70 Stress Sigma factors Burkholderia pseudomallei B7210 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 8.370345519 8.197960106 8.507241287 8.519347419 8.331889434 8.609339107 8.558487407 8.338232825 8.460219515 8.758238985 8.377661604 32350506 tape_measure_protein Bacteria phage STRUCTURAL Enterobacteria phage RB69 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 8.055512109 7.843532391 8.264268778 7.220493662 7.073475921 7.115046385 6.996130258 6.548891389 7.28846866 7.178400434 7.222130298 7.244947877 29605635 BADH Organic Remediation Aromatics Other aromatics Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 8.121407987 8.118284307 8.927082976 9.192929307 8.92689186 8.366474877 8.996574379 8.312043046 8.877751103 8.834301803 8.987445671 218885178 narI Stress Oxygen limitation Desulfovibrio vulgaris str. 'Miyazaki F' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 8.303392619 8.535322943 8.506055348 8.317107072 8.581898184 8.166072249 8.74617156 8.602976262 8.027897077 8.546492783 8.416425678 8.204384733 99083143 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.135963046 8.008874226 8.30829169 7.506986232 7.388913534 7.379912489 7.025276085 6.886056199 7.571261692 7.321841988 7.193518684 7.37224528 161761714 sigma_38 Stress Sigma factors Coxiella burnetii RSA 331 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Coxiellaceae;genus:Coxiella;species:Coxiella burnetii; 8.902148793 8.59492028 8.714248913 8.132189358 8.25106475 8.475060301 8.212529877 7.947852262 8.594015266 8.42506973 8.585734587 8.411847806 144753 endoglucanase Carbon cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 8.256706987 8.407974043 7.796566378 7.713273742 7.750853375 7.560197622 7.478675115 7.971045435 7.62520132 7.51738085 7.84097139 163745590 mer Metal Resistance Mercury Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 8.344654723 8.366497014 8.534257911 8.366506652 8.392454993 8.245163725 7.91712499 8.45925207 8.443048843 8.259321159 8.308390305 8.595727999 241213923 glnA Stress Nitrogen limitation Asticcacaulis excentricus CB 48 8.6038881 8.230892506 8.890686398 8.750413551 8.455028085 8.185591476 8.96948183 8.500911947 8.619755122 8.52343364 8.458973222 146190024 CorC Metal Resistance Cobalt Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 9.694403329 9.702293468 9.667731872 9.274597638 10.13667983 10.29586482 10.29998722 9.995707193 10.16854731 10.27191031 10.03369184 33566761 nahA Organic Remediation Aromatics Polycyclic aromatics Bordetella parapertussis 8.703608606 8.413153194 8.719296284 7.891750074 7.890837148 8.04758159 7.660036852 7.622632037 8.079103641 7.89820299 7.946816567 8.126265395 26985956 sox Sulphur Sulphur oxidation bacterium HY-86/2 superkingdom:Bacteria; 8.35603316 8.708417117 8.619556158 8.577260753 8.4839491 8.514386632 8.495021789 8.500062284 8.525517062 8.423503662 8.565931919 262219475 groEL Stress Heat shock Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;species:Grimontia hollisae; 7.912117947 8.128232864 8.11505129 8.049680093 7.798990248 8.222507904 8.109618156 8.059789521 8.06215715 8.12667229 7.699088692 87331836 nahA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 9.372089957 9.321515556 9.232359083 8.736570587 8.849611437 8.847971228 9.144075391 8.733930613 9.086058041 8.845658261 8.89563314 9.087846254 241772875 sigma_32 Stress Sigma factors Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 8.616006309 8.752366591 8.903440168 8.238599133 8.103539492 8.118979862 8.025628393 8.233223996 8.026535813 7.95141284 82523834 sigma_24 Stress Sigma factors uncultured candidate division OP8 bacterium superkingdom:Bacteria; 9.169804409 9.085342062 9.304601137 8.493057002 8.459248672 8.37863183 8.46483245 8.454983675 8.025113508 8.329421359 8.495653601 8.6791321 207743677 gyrB other category gyrB Ralstonia solanacearum IPO1609 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 8.927024276 8.827360485 8.463991126 8.583851758 8.787396943 8.268685939 8.173248588 8.633204801 8.483837385 8.454433799 8.650650936 209899352 tutFDG Organic Remediation Aromatics BTEX and related aromatics Enterobacter cancerogenus ATCC 35316 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 8.826127243 8.69852975 8.469664912 8.936552887 8.706752302 8.381054202 9.033465434 8.740710132 8.833850058 8.477651623 8.509784693 8.569672284 106889690 ara Carbon cycling Carbon degradation Hemicellulose Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 9.28076482 8.774894194 8.528540389 8.748170107 8.508870836 8.384088229 8.935523337 8.79335629 8.981889188 8.808145877 8.656530145 8.406894988 88863330 SMR_antibiotics Antibiotic resistance transporter Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 8.966746283 8.85379366 8.155180852 8.209724914 8.46612459 8.317303898 8.462197264 8.325015666 8.423503662 8.605430635 115526567 iro virulence Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.938707927 10.07347258 9.962417094 9.274469302 9.01521264 9.704012453 9.822568734 9.438093173 10.13198501 9.612335927 9.841356676 9.667341846 162285320 hrcA Stress Heat shock Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 8.388639734 8.348432005 8.082718682 7.863173832 8.053034488 8.047063913 8.347580679 8.136412285 8.33994446 7.809180565 7.874085956 7.705429979 116228199 nitA Organic Remediation Aromatics Other aromatics Solibacter usitatus Ellin6076 8.986926048 9.071524407 8.903946075 8.733229991 8.798689493 8.663060565 9.071437644 9.003991209 66047749 katE Stress Oxygen stress Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 8.768915419 8.694565393 8.710189865 7.899596043 8.318627756 8.954019554 9.17376097 8.179365582 9.116005066 8.432405713 8.518309862 8.376883659 28899777 ppx Phosphorus Phosphorus utilization Vibrio parahaemolyticus RIMD 2210633 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 9.645084034 9.934899021 9.68231004 8.963264794 9.330649882 9.962403427 10.00999018 9.772278708 9.798386032 10.12485436 10.00357304 10.25189174 219719739 ArsC Metal Resistance Arsenic Stenotrophomonas sp. SKA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 9.306989865 9.710413355 9.427377302 9.082309447 9.38627829 9.787888842 10.12451521 9.504920997 10.03845612 9.442570418 9.218230448 9.724492327 209871995 pstA Stress Phosphate limitation Oligotropha carboxidovorans OM5 8.390030465 8.358737116 8.672494861 7.824868865 7.628268774 7.756975574 7.841061054 7.71277008 7.347448779 7.557235718 7.900160679 110286770 obgE Stress Radiation stress Chelativorans sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 8.597329072 8.561731037 8.299536183 8.539385556 8.296093227 8.449044067 8.43855875 8.18936978 8.578250403 8.430785909 8.420635343 8.064936578 83577223 BchY other category chlorophyllide reductase Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 9.239197532 9.070264834 8.734917925 8.331878246 8.240490789 8.244159791 8.252256115 8.160677672 8.495994667 7.932429701 7.968996435 8.243816058 238847888 ahpC Stress Oxygen stress Clavispora lusitaniae ATCC 42720 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Metschnikowiaceae;genus:Clavispora;species:Clavispora lusitaniae; 8.949416956 8.915594303 8.868138049 9.155378253 8.948470787 8.781899223 9.210987054 9.008484344 9.044109116 8.903046286 8.793396337 8.573480545 264673475 fnr Stress Oxygen stress Caulobacter segnis ATCC 21756 9.266154784 9.29688166 9.01329175 9.480889704 9.216537268 8.871399 9.417161333 9.256153298 9.268578432 9.242928716 9.189027136 9.059462768 116251441 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.42704847 8.245068834 7.485708676 7.478878041 7.841226295 7.841472925 7.627809347 7.894785274 7.659755843 7.892821921 7.694425429 170744941 fnr Stress Oxygen stress Methylobacterium sp. 4-46 9.465159758 9.308926054 9.113634593 8.572171798 8.430067937 8.875583186 8.953521402 8.315427939 9.046638547 8.567610938 8.860390147 8.733537398 33862536 pilin virulence pilin Prochlorococcus marinus str. MIT 9313 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 8.299513155 8.20882554 8.634306817 8.388943924 8.076587426 8.204508864 7.672816717 6.935152706 8.116610991 8.03562925 7.811345952 8.027984928 170751357 tfdA Organic Remediation Aromatics Chlorinated aromatics Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 7.986926616 8.114562036 8.045905605 8.205732646 7.940007056 8.161470891 7.999692617 8.077382773 7.699081307 7.96058536 87303008 amyA Carbon cycling Carbon degradation Starch Synechococcus sp. WH 5701 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 9.281614378 9.208287124 9.327915268 8.806310507 8.587441222 8.701900187 8.443153514 8.410999424 8.406438526 8.469652231 8.469783053 8.850166417 113874815 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 8.014766019 8.548014435 7.470953462 7.548660418 7.429799142 7.213768265 7.104976489 7.715550227 7.248635415 7.197985952 7.426621361 254282165 pcc Carbon cycling Carbon fixation gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.004812304 7.942201132 8.371442531 8.357267366 8.076668807 8.358124318 8.256462856 8.212748446 8.162642967 8.182699596 7.882301572 167646139 chnB Organic Remediation Other Hydrocarbons Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 7.65167956 8.348408351 8.133980393 7.750869008 7.654804619 7.998724496 8.134543345 7.749939014 88797057 pulA Carbon cycling Carbon degradation Starch Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 8.804604437 8.450893923 8.774136799 8.140868593 7.630159862 8.026132855 8.004283693 8.138824559 8.135558689 66474871 cmuA Organic Remediation Chlorinated solvents uncultured bacterium superkingdom:Bacteria; 8.330925184 8.17222136 7.816546857 8.36049996 8.063791382 8.576106911 8.12868668 8.237663675 8.086739553 8.104053752 8.195969497 19548111 nirS Nitrogen Denitrification Thauera aromatica superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 8.37700788 8.22325244 8.686375311 7.945202705 8.100006292 7.938364213 7.446579592 8.218617891 7.737736378 8.01231039 8.088169497 7.897368878 247546792 cda Carbon cycling Carbon degradation Starch Paenibacillus sp. JDR-2 8.308089493 8.393084909 8.381330053 7.406013358 7.70910894 7.879630024 8.064499757 7.250873865 7.982633194 7.457036573 7.398090669 7.678497306 15621596 biotin_carboxylase Bioleaching Carbon fixation Sulfolobus tokodaii str. 7 8.643533562 8.72813313 8.984666292 8.807931912 8.969172413 9.031418581 8.480046657 9.121153006 8.472479769 8.890101282 9.169944249 8.376511251 225194050 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9.252248472 8.712043508 9.028753191 8.506869202 8.694861126 8.318704003 54015074 TerD Metal Resistance Tellurium Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 9.504903977 9.449834103 9.455238519 8.715126317 8.69565215 8.425989056 8.38690924 8.625319875 8.761241391 8.80503978 8.721062027 8.690453916 109455563 glnA Stress Nitrogen limitation Roseobacter denitrificans OCh 114 8.633080924 8.498139692 8.490638246 8.27592459 8.001269318 8.264149166 8.12092659 8.219589662 8.313680688 8.481986334 8.419185873 253574445 nplT Carbon cycling Carbon degradation Starch Paenibacillus sp. oral taxon 786 str. D14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 9.643866687 9.700583755 9.453789379 8.639459581 8.817671398 8.778812236 8.917557316 8.642986419 8.497474193 8.454098468 8.853001478 256672984 pstA Stress Phosphate limitation Streptomyces sp. AA4 8.314448433 8.731721567 8.78352252 8.032617691 8.079279533 8.0037335 8.326523348 7.989356793 8.055442656 7.964343827 7.864440418 7.961305552 116269653 Arylest Organic Remediation Aromatics Other aromatics Polynucleobacter sp. QLW-P1DMWA-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 8.021735964 8.106658065 8.063887683 8.257046184 8.104341758 7.695619729 8.383172248 8.055157872 7.77078984 8.211252713 154154796 TerC Metal Resistance Tellurium Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 8.794220572 8.946204061 9.222020933 8.471200702 8.53742895 8.269386252 8.488840506 9.113047531 8.209497588 9.009438569 8.799606629 9.162510615 119715897 CadA Metal Resistance Cadmium Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.752021655 8.601742195 8.584241723 8.574886172 8.738209609 8.473104606 8.524545152 8.777614265 8.403185054 8.861664872 8.559259894 8.837857034 199593995 narG Nitrogen Denitrification uncultured bacterium 9.256585086 9.350503182 9.238439273 8.622338025 8.849994733 8.885340626 8.898282833 8.764385424 8.752821614 9.125559451 8.745948258 8.966577024 81251651 nirS Nitrogen Denitrification uncultured organism 8.258856086 8.375064062 8.118173573 8.232465825 8.097334258 8.013757458 8.488393821 8.080158106 8.355024052 8.114273976 8.06326903 166861074 atzC Organic Remediation Herbicides related compound Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.251210876 8.412928259 8.34347005 8.441551891 8.393975009 8.20070537 8.520046482 8.590423632 8.402517201 8.861080474 8.684528803 8.418051318 121700270 nitA Organic Remediation Aromatics Other aromatics Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 8.979920651 8.98343772 9.148611814 8.558956259 8.700577312 8.634018872 8.545020706 8.673134274 8.704562087 8.617455624 8.528226523 8.730155202 157845737 arcB Stress Oxygen limitation Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 8.806297 8.626870898 8.465350873 8.305861252 8.52201728 8.541558753 8.456360107 8.284464675 7.904524617 84704542 AceB Carbon cycling Carbon degradation others Parvularcula bermudensis HTCC2503 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 9.779283781 9.839186505 9.868126627 9.192927218 9.249372974 9.237122214 9.011304638 8.682899239 9.050404753 9.162153338 9.091529174 9.429555484 266626993 B_lactamase_C Antibiotic resistance Beta-lactamases Caulobacter segnis ATCC 21756 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 9.450348567 9.358885398 9.402989273 8.560670413 8.706691363 8.740672946 8.784503301 8.535614297 8.709503429 8.688689201 8.604383165 8.969652743 256374490 clpC Stress Protein stress Actinosynnema mirum DSM 43827 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinosynnemataceae;genus:Actinosynnema;species:Actinosynnema mirum; 9.033090289 9.098337955 8.972209417 8.833904772 8.8074988 8.515943346 8.959332648 8.758712232 8.948846468 8.894385354 8.72357611 8.754967605 112462695 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.7967192 8.834966844 8.59051698 8.660237176 8.41132806 8.389828556 8.577665481 8.45550213 8.863597593 8.066998093 8.15800503 8.120441184 54016528 bphF1 Organic Remediation Aromatics Polycyclic aromatics Nocardia farcinica IFM 10152 9.02616367 8.977882214 9.154724395 8.834796494 8.837601161 8.656857373 8.815372534 8.836874912 8.782921727 8.834071627 8.808603456 8.793517667 227521115 srt virulence surface protein Lactobacillus gasseri JV-V03 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus gasseri; 6.811422907 7.528499042 114776318 sigma_38 Stress Sigma factors Mariprofundus ferrooxydans PV-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Zetaproteobacteria;order:Mariprofundales;family:Mariprofundaceae;genus:Mariprofundus;species:Mariprofundus ferrooxydans; 11.34561297 11.20586783 11.32615173 10.01362583 10.66588835 10.58389982 10.93093066 10.23019418 11.22577344 10.31273428 10.47140613 10.64043845 221726197 Tet Antibiotic resistance other Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.29624905 8.45823109 8.540337984 8.304313403 8.25778438 8.036908065 8.132825286 8.273800987 8.44637711 8.150660779 7.98792235 198254500 phn Organic Remediation Herbicides related compound Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 8.591127655 8.548054174 8.833671217 8.249028789 8.168694164 8.300615014 8.230790852 8.385731105 8.491739199 8.445958212 8.375162809 8.413229236 108798992 chnB Organic Remediation Other Hydrocarbons Mycobacterium sp. MCS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 9.288695311 9.361281985 9.331641488 8.747775318 8.992500547 8.637328285 8.543491315 8.741538238 8.600667581 8.85431152 8.811720432 9.075635495 81251665 nirS Nitrogen Denitrification uncultured organism 7.751705855 7.857052544 7.739751198 7.208728163 7.568295903 7.96119802 7.700295615 7.665317639 7.743136106 70930943 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.48238534 8.486690872 8.727999892 8.154220507 7.901254903 7.852569721 7.670296528 7.658604444 7.997451541 7.986313833 8.086661234 8.165988633 197330028 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.490267769 8.932877268 9.241432574 8.286295882 8.200069435 7.959331022 8.312567907 8.541436536 8.231834626 8.453870251 8.520667711 8.75751052 213966090 ZitB Metal Resistance Zinc Corynebacterium amycolatum SK46 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium amycolatum; 9.70584766 9.593003422 8.581603551 8.510164042 8.782570135 8.958401131 9.311104649 166031695 sigma_70 Stress Sigma factors Dorea formicigenerans ATCC 27755 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Dorea;species:Dorea formicigenerans; 8.072456159 8.053395046 8.248939076 7.435378953 7.494519262 7.354309886 7.365821271 7.153732926 7.627043846 7.404355997 7.430556379 75701357 sigma_70 Stress Sigma factors Anabaena variabilis ATCC 29413 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena variabilis; 9.35450392 9.214664871 9.028471224 8.44371573 8.677973526 8.567467618 8.876817205 9.003290689 8.900325846 9.097228898 9.250603732 8.999549397 56130753 cnrA Metal Resistance "Cobalt,Nickel" Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.365046031 8.515196119 8.16681756 8.11224695 8.046422874 8.340803937 8.159788777 8.25829838 8.325760433 8.293455991 7.816937041 222448074 glnA Stress Nitrogen limitation Chloroflexus sp. Y-400-fl 8.692068445 8.659855065 8.738461586 9.443673576 9.135930215 9.225644703 9.482591168 8.944607419 9.268895189 9.153482522 8.831656459 116613074 nahA Organic Remediation Aromatics Polycyclic aromatics Arthrobacter sp. FB24 8.828047154 8.540795269 8.795347672 8.326974341 8.326891631 8.325004689 8.118076154 8.372093777 8.22167969 8.19829883 8.205558855 8.392361439 27550084 TehB Metal Resistance Tellurium Photorhabdus luminescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus; 9.934282948 9.989387913 10.16888301 9.386443308 9.462568067 9.317518059 9.336220402 9.679011067 9.30695775 9.730488379 9.718856752 9.853818697 116091781 gyrB other category gyrB Oenococcus oeni PSU-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Oenococcus;species:Oenococcus oeni; 7.766504581 7.541747415 7.47629799 7.238685355 7.30006454 7.790504984 7.582200983 7.222170923 7.566660953 160917476 narG Nitrogen Denitrification uncultured bacterium 9.008865746 9.077562139 8.911365741 9.087120694 9.382033283 9.251819506 9.250872306 9.183334693 9.311146474 107015899 nitA Organic Remediation Aromatics Other aromatics Gibberella moniliformis superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella; 9.347786004 9.265441092 9.405456027 9.35848065 9.554645607 9.507525296 9.375323916 9.791877621 9.395231735 9.402709299 9.193718305 9.411591522 162281561 xlnD Organic Remediation Aromatics Other aromatics Hoeflea phototrophica DFL-43 8.747698368 8.070565652 8.180511795 8.059828254 7.870600663 8.029503131 8.025709741 7.816909042 8.278413326 7.641819027 7.883234627 7.911621622 269788603 sigma_24 Stress Sigma factors Sphaerobacter thermophilus DSM 20745 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 8.71653189 8.871817726 8.765589211 8.553140821 8.75497848 8.414699214 8.738321913 8.408917547 8.715284191 8.784052314 8.806870186 8.466899275 126320278 silC Metal Resistance Silver Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.231584489 8.197215352 7.463996634 7.744243897 8.475375431 8.275181453 8.125336293 8.143125724 111224754 nmoA Organic Remediation Aromatics Nitoaromatics Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 9.361601275 9.160227489 9.362404716 8.992038808 9.039682755 9.393805689 9.184725791 9.294221599 9.423910876 9.302401951 9.748933105 9.401171168 117999268 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.303607681 8.284837737 8.512806047 8.140240609 8.166873948 7.808586905 8.21699988 8.576126003 8.411889759 8.47856844 8.354736452 8.387304274 118502788 pilin virulence pilin Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 8.295460942 8.466261609 8.454524159 8.217148347 8.536042628 8.659871609 8.196627307 8.843608749 8.218483545 8.487147219 8.673603091 8.520999738 146313536 TerC Metal Resistance Tellurium Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 8.904477855 8.822702055 8.946965187 8.184042713 8.108232677 8.213771636 7.924431093 7.832820614 7.871675145 7.725372959 8.201302408 256357124 glnA Stress Nitrogen limitation Catenulispora acidiphila DSM 44928 9.322026122 8.458410235 8.128688356 9.460828457 9.382821604 8.975814446 9.089514252 9.124157235 8.710487142 8.833310212 8.707752403 8.598709903 24986362 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.733401169 8.846510031 7.953498576 8.135163369 8.077075709 8.60820358 7.694184237 8.885398913 8.03898301 8.022471509 8.550331607 158514478 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.474069382 8.126217073 8.149088074 7.73073708 7.823188402 7.551592807 7.384198174 7.899373702 7.997888485 7.924209153 7.696180517 7.635241777 91202321 czcC Metal Resistance "Cadmium,Cobalt,Zinc" Candidatus Kuenenia stuttgartiensis superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;genus:Candidatus Kuenenia; 9.054927444 8.881439559 9.045959839 8.479314838 8.246549564 8.584369109 8.079623159 7.829834658 8.048463443 8.293010567 8.395878594 33577871 cbaA Organic Remediation Aromatics Chlorinated aromatics Bordetella bronchiseptica RB50 8.37861439 8.702568307 8.352035688 8.486577914 7.909994777 8.657590252 8.101011269 8.442121003 196250567 phoB Stress Phosphate limitation Geobacillus sp. G11MC16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.221730659 8.100144872 7.571566608 7.467243107 7.049195021 7.625386185 7.377348317 7.616265846 7.699190349 7.569972217 82741452 FTHFS Carbon cycling Acetogenesis Shewanella sp. W3-18-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 9.089771421 9.173921859 9.251497781 8.610843483 8.663061406 8.783378201 8.509539397 8.822772288 8.51609389 8.873369978 9.018031224 8.874668508 145254097 hdnO Organic Remediation Aromatics Heterocyclic aromatics Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8.378904542 8.132624539 8.37996361 7.852580801 7.760283253 7.681392395 7.476144195 7.450694632 7.591642981 7.720990842 7.745938424 7.824088025 110634870 proV Stress Osmotic stress Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 9.172058845 9.312793979 9.505104786 9.076988006 9.029974045 8.695314516 9.096615206 9.156516727 9.167176523 9.36238806 9.250737315 9.30007863 56809449 nifH Nitrogen Nitrogen fixation uncultured archaeon superkingdom:Archaea; 7.972601919 7.814284689 8.135031017 7.367612738 7.206811335 7.150062284 6.801807417 7.465281679 6.929031668 6.978376899 7.354095346 219996664 dsrA Sulphur sulfite reductase Thioalkalivibrio sp. HL-EbGR7 7.907727017 8.278895993 8.370164312 7.92509786 7.902618228 7.509130049 7.669668657 7.713826403 7.869955269 7.792536095 7.796446456 8.096767708 226319232 grpE Stress Heat shock Deinococcus deserti VCD115 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 9.322174391 9.33599349 9.385099308 8.921521954 8.987176598 8.969545805 9.042209005 8.974877088 8.610895328 8.942114952 8.929648242 8.981679293 239617106 pstB Stress Phosphate limitation Kosmotoga olearia TBF 19.5.1 8.905784892 8.73475918 8.834413363 7.945796584 7.518286065 7.973158799 7.531787096 7.540549079 7.447863948 7.874669786 7.525086293 7.877893478 13815766 pcc_Bioleaching Bioleaching Carbon fixation Sulfolobus solfataricus P2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus;species:Sulfolobus solfataricus; 8.669320202 8.409818778 9.074249247 7.91620863 7.594946328 7.936673966 7.4282725 7.80631071 7.853586099 7.971163592 7.883002965 110286002 ureC Nitrogen Ammonification Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 8.743756135 8.505843597 8.763769681 8.118340551 8.120929607 8.236129928 7.88901992 7.928011863 8.314505323 7.928064831 8.05677372 8.276561133 256363043 sigma_24 Stress Sigma factors Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 9.720811077 9.71757926 9.54832801 9.179822996 9.24716369 8.991310823 50951986 aclB Carbon cycling Carbon fixation Leifsonia xyli subsp. xyli str. CTCB07 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Leifsonia;species:Leifsonia xyli; 8.764609231 8.809291603 8.719107575 8.81611294 8.460406909 8.192112987 8.307706952 8.73322881 8.581203084 8.589409835 8.757461599 114307129 CadA Metal Resistance Cadmium Nitrosomonas eutropha C91 8.029879603 8.112486526 7.669605648 7.395140064 7.553780922 7.340541173 7.431048283 7.671556563 7.528967973 7.578499183 7.4910178 118730589 vanA Carbon cycling Carbon degradation Others Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.33866655 8.236749969 8.535982261 8.518285035 8.585962536 8.107750999 8.769411127 8.244944732 8.422841108 8.289317056 8.37232412 114705967 katE Stress Oxygen stress Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 9.610073247 9.68218011 9.513830144 8.980214406 8.107958126 8.939254177 9.151055793 8.969197439 8.953599825 9.139943995 9.130582505 8.935814632 151360016 sigma_70 Stress Sigma factors Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 8.580855548 8.40453156 8.6068498 7.742106712 7.66999597 8.052362702 8.029064134 7.495974579 7.940706236 8.02939266 7.861571416 88815925 clpC Stress Protein stress marine actinobacterium PHSC20C1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 8.89373738 8.498201682 8.62245664 8.155283102 8.070691471 8.236006734 8.239958537 8.558188882 8.476142148 8.446461081 152996725 ara Carbon cycling Carbon degradation Hemicellulose Marinomonas sp. MWYL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 8.142231854 8.361093525 8.281635218 8.659041942 8.183477836 7.98933886 8.206914731 8.276448535 8.345909598 8.212789834 8.3770872 7.67530162 260422805 AceB Carbon cycling Carbon degradation others Citreicella sp. SE45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 8.042866829 8.2692632 8.227800125 7.976153324 8.076035323 8.0978219 8.219007202 8.209787449 8.250653873 8.408179654 8.318975853 8.29527825 168701405 sigma_24 Stress Sigma factors Gemmata obscuriglobus UQM 2246 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata;species:Gemmata obscuriglobus; 8.52020307 8.729844285 8.680114743 8.262262666 8.278377895 8.267384367 8.410041287 8.600282129 8.46606489 8.522117565 119713673 linB Organic Remediation Pesticides related compound uncultured marine bacterium EB0_39H12 superkingdom:Bacteria; 9.211607753 8.951825574 9.243126466 8.923026962 8.792592885 8.487846044 8.616490124 8.650229629 8.568005113 9.092997458 9.051826328 9.146381731 71155022 pcc Carbon cycling Carbon fixation Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 9.341805261 9.802341501 9.672134173 9.726906731 9.933080803 9.671257417 9.827666573 10.08527466 9.783716956 10.03932779 9.921211347 9.702094109 20808055 pstB Stress Phosphate limitation Thermoanaerobacter tengcongensis MB4 8.824520165 8.722258481 8.861366533 8.119949747 7.981693873 8.112821335 7.855964517 7.777445105 8.040692229 7.853507416 7.846268246 8.236777327 225194046 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.566874667 8.474326922 7.651825512 7.646957552 8.043735434 7.821813395 7.714445949 8.091635482 8.081731937 8.218314863 8.303680805 218758227 AceB Carbon cycling Carbon degradation others Desulfovibrio vulgaris str. 'Miyazaki F' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 8.682697987 8.748588944 9.043852536 8.437797257 8.46692489 8.44305164 8.365260366 8.582136686 8.401828662 8.450368408 8.257021223 8.376078263 182679451 MFS_antibiotic Antibiotic resistance transporter Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 9.39195972 8.619307057 8.234761237 9.301577896 9.202135919 9.226199826 8.782373386 9.123143626 8.858797747 9.061486221 9.2090414 8.379495253 49612434 nitro Organic Remediation Others Erwinia carotovora subsp. atroseptica SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 7.704449976 7.554151209 7.492893944 7.85216247 7.964423942 7.737277379 7.772807268 156869289 tutFDG Organic Remediation Aromatics BTEX and related aromatics Clostridium leptum DSM 753 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 9.083588528 8.833776148 9.104345552 8.952578437 8.772526464 8.467299708 8.785000865 9.230050197 8.862760123 9.203466759 9.126542334 9.222646757 209522816 CopA Metal Resistance Copper Arthrospira maxima CS-328 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira maxima; 7.055343671 6.990732229 7.078055953 3298505 amyA Carbon cycling Carbon degradation Starch Bacillus subtilis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 8.38988698 8.273065367 8.622823656 8.158017383 7.819307197 7.849580479 7.184941243 7.32935009 7.607368123 7.806355004 7.678807984 198254947 ChrA Metal Resistance Chromium Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 8.426071639 8.900396018 8.444297026 8.348630851 8.387840415 8.381581331 8.307682447 8.581066266 8.411928617 8.453281101 8.409372839 8.29016907 149811369 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.424747489 8.658618177 8.172080427 7.761758957 8.083358678 8.173271519 7.783094292 8.428016073 7.913036129 8.03064592 7.707755758 134103519 pstB Stress Phosphate limitation Saccharopolyspora erythraea NRRL 2338 8.555647775 8.541652761 8.358940157 8.689734121 8.753170123 8.370004007 8.749787883 9.172325498 8.595433988 8.937168632 8.55060912 8.679720096 124898421 ChrA Metal Resistance Chromium Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 8.407425098 8.744560196 8.197384126 8.148149963 8.506551482 8.88256151 8.483188762 8.550218371 8.374720295 8.528773293 8.608870988 71848796 pstC Stress Phosphate limitation Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 8.4318324 8.460593387 8.532565151 8.299003208 8.393167318 8.102257836 8.444190155 169639042 grpE Stress Heat shock Candidatus Desulforudis audaxviator MP104C superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Candidatus Desulforudis;species:Candidatus Desulforudis audaxviator; 8.545844496 8.890839484 8.814047986 8.72651066 8.845343292 8.623346634 8.875246552 8.996654311 8.663644137 9.040248459 8.982184889 8.618968602 88701127 mauAB Organic Remediation Herbicides related compound Congregibacter litoralis KT71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 8.899846612 9.254976442 9.198629942 8.165388178 8.724121398 8.595765044 8.821662259 7.860611194 8.219400662 8.382873887 8.492137172 120588557 sigma_70 Stress Sigma factors Acidovorax citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 8.59765693 8.286745314 9.424645201 9.130484675 8.379976271 9.076274266 8.639906728 8.867253342 9.020926479 8.59828137 99083061 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.714733945 8.692926702 8.831535706 8.088953773 7.959738881 7.981425549 7.792775613 7.679222169 8.05276678 7.844275762 7.718815669 8.145807938 151302308 APS_AprA Sulphur adenylylsulfate reductase sulfate-reducing bacterium QLNR1 9.070630314 8.711531837 9.047616293 8.12700649 8.12715272 8.009712836 7.570043983 7.265137861 8.232661194 8.018073532 8.053028607 8.21369662 124267838 mauAB Organic Remediation Herbicides related compound Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 10.22501307 10.11051607 10.11627879 9.867919311 9.892930481 9.73183272 9.971586403 10.21808357 9.995362787 10.05395085 9.87815976 10.07725701 54023925 tfdA Organic Remediation Aromatics Chlorinated aromatics Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 9.253954395 9.152980242 8.793622209 9.231154503 9.17811004 9.514828934 9.458103981 9.890557774 9.452688818 9.276906997 9.588978425 142586 cellobiase Carbon cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus circulans; 8.510719073 8.473704504 8.116516933 8.117015823 8.482732901 8.294689268 8.498661792 8.04963244 227490283 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium pseudogenitalium; 9.023780644 8.494649006 9.166153381 8.504889747 8.054753436 8.20389791 8.592198724 8.795255553 212704972 pstB Stress Phosphate limitation Desulfovibrio piger ATCC 29098 8.924032569 8.457471112 8.648390959 8.020435042 8.312337515 8.365198123 8.160075361 8.485848798 8.203328099 8.565633284 8.354295415 90415035 ZntA Metal Resistance Zinc Photobacterium profundum 3TCK superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 8.283693499 8.095945866 8.256718944 7.914034739 7.622286436 7.583341901 7.899999721 7.418709526 8.156469621 7.660783182 7.631741754 7.419822671 32307667 rubisco Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.440242236 7.97835724 7.869814893 7.853178306 8.06524466 237899460 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.245151598 9.277368771 9.244303327 8.882188768 8.733201333 8.739923986 8.503623248 8.949400643 8.929285643 8.944738695 8.841007683 227112214 amyA Carbon cycling Carbon degradation Starch Pectobacterium carotovorum subsp. brasiliensis PBR1692 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 8.879379685 8.41105169 8.670380844 7.918139957 8.067010945 8.037323922 8.47190264 7.863813868 7.778202693 8.055321181 116753644 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Methanosaeta thermophila PT superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosaetaceae;genus:Methanosaeta;species:Methanosaeta thermophila; 7.329595253 7.29150173 3925395 napA Nitrogen Dissimilatory N reduction Pseudomonas sp. G-179 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae; 8.238970326 8.318340406 8.294632415 8.166361405 7.991296042 7.626473816 7.968273017 8.048271059 8.14074314 7.939467067 7.601440616 7.921369749 253700771 nrfA Nitrogen Dissimilatory N reduction Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.389873562 8.105924385 8.593861481 8.23388581 7.938616773 8.081367077 7.784432864 8.063928717 7.952561542 7.98359332 7.996423881 8.10241947 40252999 B_lactamase_A Antibiotic resistance Beta-lactamases Streptomyces albulus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.556559096 8.531490374 8.772968541 8.519184393 8.622853496 8.631766786 8.404867165 8.597870733 119896295 gyrB other category gyrB Azoarcus sp. BH72 9.101231467 9.184203653 8.574622121 8.449553105 8.348892794 8.081526501 8.469790717 8.362562408 8.597402168 8.427604601 8.615922124 119698575 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.342406696 8.25567385 8.643153535 8.18095064 8.006999003 7.794518549 7.444517386 7.645252935 7.480686586 7.537462366 7.873622962 71556987 iro virulence Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 9.344674139 9.201813921 9.47865749 9.480587626 8.957717934 9.447087334 9.544784792 9.053462925 27377894 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.94417606 8.458718324 8.403386773 8.402498068 8.201738331 8.145155161 8.389537278 8.547123287 8.530626432 8.618071934 8.626597566 8.586216676 108768650 narI Stress Oxygen limitation Mycobacterium sp. MCS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.264727253 8.228244055 7.777144736 7.596161246 7.863366515 7.726146811 7.398941564 8.046466817 7.822094215 7.454204134 7.351266548 151357412 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.707943637 8.883249788 8.747315276 8.873852256 8.720611452 8.663031921 8.816732177 8.828009237 8.706967252 8.631280202 8.681620953 8.8110436 71383850 nasA Nitrogen Assimilatory N reduction uncultured bacterium superkingdom:Bacteria; 8.315782002 8.496795925 8.246984604 7.995501646 8.301603233 8.352377731 8.571714256 8.475775795 8.626692616 8.595477103 8.502440403 8.544501105 70986729 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 8.777156006 8.696430957 8.566433506 8.273202262 8.609527617 8.674403913 8.89021397 8.890306932 8.751975469 9.056862965 8.937855546 9.071421513 46914729 pilin virulence pilin Photobacterium profundum SS9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 8.645945231 8.595957464 8.698553056 7.823360741 7.718957878 7.765152746 7.362348091 7.212462406 7.934255824 7.587063089 7.464140121 7.778196624 222056241 cytochrome Energy process Energy process Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.800509048 8.663194588 8.470097375 7.862439655 7.983522251 7.746689742 7.623507415 7.658568273 8.445172384 7.770471881 7.718051682 8.078450458 54016322 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Nocardia farcinica IFM 10152 8.576121423 8.598782383 8.550818173 8.386281935 8.104852888 8.291300239 8.631239374 8.456995913 8.566340786 8.742740061 8.762873525 8.466809186 149124146 endoglucanase Carbon cycling Carbon degradation Cellulose Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 8.109182107 8.25776918 8.222187205 7.568533368 7.528675276 8.023553921 8.008109004 7.476530306 8.124540129 7.522236621 7.617617292 7.874170765 120588290 vanA Carbon cycling Carbon degradation Others Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 8.518796986 8.902751439 8.356249973 8.634056003 8.385630821 8.532099291 8.796900305 8.15147505 8.560019361 8.028122539 8.077294125 7.918899051 149125325 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 8.392797186 8.242012956 8.341960152 8.240295864 8.014261107 7.896709853 8.630094899 8.381293474 8.290620789 8.270189199 8.356405744 77545820 pilin virulence pilin Pelobacter carbinolicus DSM 2380 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter carbinolicus; 8.837425531 8.998753294 8.916636875 8.096999864 7.898789802 8.359363389 8.572414378 8.153270351 8.548950449 8.15378894 8.196023783 8.477666149 119718714 TerZ Metal Resistance Tellurium Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.442217582 8.15000572 8.245827426 7.896605343 7.710905621 8.080860845 8.052525404 7.47808234 8.257950791 7.56402821 7.725535047 7.562176967 67156658 ureC Nitrogen Ammonification Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 10.08597346 10.04500375 10.12893298 9.410348567 9.295621436 9.357914964 9.141763938 9.137909672 9.267865338 9.260733273 9.413864433 9.597258 209875019 ZitB Metal Resistance Zinc Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 8.790364764 8.865446749 8.835841991 8.032518224 7.778035143 7.774937531 7.843334894 7.584927814 8.065882691 7.762397012 7.967194911 7.770175205 23305803 phenol_oxidase Carbon cycling Carbon degradation Lignin Phaeosphaeria halima superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria; 8.936418597 8.657826038 8.24230433 8.220168457 8.191292149 8.408510323 8.015280212 8.115141591 8.606236542 8.185738005 8.226161735 7.988664337 196184067 glnA Stress Nitrogen limitation Brevundimonas sp. BAL3 10.14338344 10.28339318 10.39453811 9.695363097 10.20981918 10.36732941 9.992581094 10.57447757 9.94618166 10.22158353 10.34829051 10.33742634 163802442 ppx Phosphorus Phosphorus utilization Vibrio campbellii AND4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.900460319 9.090315807 9.277763987 9.033746862 9.235441225 9.246747899 8.952981872 9.512233846 8.927927792 9.170805711 9.154681925 9.133786835 271501800 MFS_antibiotic Antibiotic resistance transporter Dickeya dadantii Ech586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 8.91519434 8.791342308 8.550873993 7.818897889 7.872893155 8.201496232 8.394750299 8.445885978 8.375185552 8.599356466 8.645113306 8.565168597 160363930 nagG Organic Remediation Aromatics Aromatic carboxylic acid Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.673265905 8.633884755 8.329669253 8.432406288 8.467094658 8.560075741 8.590267215 8.413946874 8.415876592 8.30377443 8.420664753 8.138832016 6505657 pheA Organic Remediation Aromatics Other aromatics Comamonas testosteroni superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 8.863562796 8.722794959 8.923493365 8.922390489 8.983752151 8.958207857 8.794109528 9.104973528 8.846413102 9.051584447 9.205268648 8.764297501 160898214 CopA Metal Resistance Copper Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 9.174017598 9.43190003 9.172886067 9.198248242 9.66148533 9.79087988 9.81044223 10.0906522 9.637584343 10.02098738 10.10643508 10.01804209 219679122 CopA Metal Resistance Copper gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.570953322 8.939192986 8.726270142 8.560183452 8.504903975 8.31214754 8.416111391 8.356295584 8.640718771 8.248289705 8.119013866 8.358111843 83317100 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.799503404 8.913041621 8.666693649 8.463119137 8.47837305 8.705253354 8.844178369 8.583908867 8.891477937 8.695315545 8.699454533 8.878525412 157917860 endochitinase Carbon cycling Carbon degradation Chitin Salinispora arenicola CNS-205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 7.732358404 7.740591793 7.702581974 7.910410843 7.683932277 7.737209818 7.910603287 115469636 CadA Metal Resistance Cadmium Oryza sativa (japonica cultivar-group) superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Streptophyta;class:Liliopsida;order:Poales;family:Poaceae;genus:Oryza;species:Oryza sativa; 9.204815028 8.692911764 9.043891513 9.479724712 9.395002423 9.139023378 9.248433373 9.521101461 8.983353536 9.666796393 9.702816811 9.061573497 227503216 glnA Stress Nitrogen limitation Corynebacterium accolens ATCC 49725 9.599985229 9.360801089 9.271602803 9.710809603 9.547720038 9.580325743 9.534161431 9.750841878 9.507624412 9.671045977 9.725639783 9.392991416 167587540 katE Stress Oxygen stress Burkholderia ubonensis Bu superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ubonensis; 8.483610872 8.691573255 8.29884885 8.368315459 8.383334937 8.588041191 8.323029122 8.379514228 8.348343779 8.329904279 8.794848858 8.334357931 85704595 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 9.387022561 9.427676427 9.313673751 8.805933414 8.91099771 8.956821712 8.852632871 8.957013115 8.881811752 9.046579707 9.134260705 9.129410408 57117001 linB Organic Remediation Pesticides related compound Mycobacterium tuberculosis H37Rv superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 9.640757765 9.721959613 9.579790016 9.276119654 9.101132893 9.018303405 9.169477568 8.918900968 9.145179509 9.119204159 9.090448489 9.234788481 91187134 pulA Carbon cycling Carbon degradation Starch Psychroflexus torquis ATCC 700755 9.001196124 8.958285413 8.407283573 8.320904295 8.206331418 7.911226199 7.957867484 8.143621974 8.365162066 8.100248946 8.507788767 219939001 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.646840299 7.866783167 8.377774948 8.178769626 8.06103346 8.206537802 8.030032141 7.949476626 7.826420592 8.042839027 7.863049568 154320900 nitA Organic Remediation Aromatics Other aromatics Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 8.035186803 8.104424775 7.399388503 7.358577735 7.278780104 7.608776633 7.137235831 7.905981999 7.375568627 7.237809986 7.262178272 29604256 CopA Metal Resistance Copper Streptomyces avermitilis MA-4680 8.344829889 8.19116377 8.374978481 7.805173462 7.713031332 7.76717019 7.590559791 7.697811991 8.117464823 7.800977091 7.735307392 7.679535364 220935967 CadA Metal Resistance Cadmium Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 9.193529413 8.963154233 8.832495294 8.740988167 8.943044314 9.019028686 8.921355565 8.859353688 8.6570116 8.660108613 11071579 fnr Stress Oxygen stress Pseudomonas stutzeri 8.478322206 8.067360619 7.76661718 7.638332445 7.588005635 6.877886984 7.330260019 7.651012165 7.521869168 7.369273712 7.343370634 121301649 ChrA Metal Resistance Chromium Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.043336137 8.258291206 7.810081881 8.149316909 7.51470615 8.131261645 8.530840918 8.510351893 8.35333755 8.515251321 121609909 phn Organic Remediation Herbicides related compound Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 8.905185141 8.672730394 9.070907103 9.532779484 9.450831314 9.541065028 8.768315407 9.510029187 8.990524404 9.175195622 9.053951816 9.541524701 9757655 toxin virulence toxin Staphylococcus hyicus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus; 8.204490833 8.089054641 7.617328496 7.596147003 7.817070984 7.419292258 7.602818811 7.607579382 7.704504521 8.354626497 7.768203954 260576156 hydrogenase Energy process Energy process Rhodobacter sp. SW2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 9.023433287 8.90421616 9.209620186 8.32651225 8.363097284 8.357626918 8.133944085 8.071748423 8.176929648 8.194294946 8.526893718 83838572 phn Organic Remediation Herbicides related compound Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 8.20491172 8.226149187 8.468427068 8.417440173 8.217266327 7.648050764 8.065950535 8.837175515 8.446706653 8.16572598 8.007424777 8.51092983 50725018 phdJ Organic Remediation Aromatics Polycyclic aromatics Sphingomonas sp. A4 8.610339693 8.528238579 8.193245891 7.960446493 7.703940566 7.74329664 7.968649507 7.986864721 7.966017834 8.104982 42524684 sigma_32 Stress Sigma factors Bdellovibrio bacteriovorus HD100 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 8.330554139 8.241407787 8.401636716 8.174890158 7.624043821 8.262807518 8.380855879 7.860668093 7.828034601 7.851444539 198260615 B_lactamase_C Antibiotic resistance Beta-lactamases Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 8.97086282 9.007185357 9.244490694 8.45246523 8.448919229 8.261859858 7.765974007 7.841167166 8.250865486 8.610991842 8.429084512 8.567736278 192764476 narG Nitrogen Denitrification uncultured bacterium 8.387552721 8.075432913 8.421787121 7.663855591 7.667544588 7.82573456 8.19173251 7.747902686 8.393289121 7.690784784 7.616341729 151559990 phoB Stress Phosphate limitation Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 8.310184487 8.079941835 8.522346913 7.966928323 8.119091224 7.626628049 8.267575919 8.044653935 8.417237357 8.179942276 8.346812363 8.067707382 254251936 glnA Stress Nitrogen limitation Burkholderia dolosa AUO158 10.51543657 10.39004148 10.33687243 9.543312067 9.623954084 9.746723164 9.883545232 9.710360289 10.30431187 9.604485288 9.872867776 9.778766446 77543332 arhA Organic Remediation Aromatics Heterocyclic aromatics Sphingomonas sp. MWW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 9.976764297 10.06097071 10.03911652 9.5127428 9.343085812 9.838090005 9.726952311 9.919581296 9.680106854 110668545 grpE Stress Heat shock Haloquadratum walsbyi DSM 16790 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloquadratum;species:Haloquadratum walsbyi; 8.775773052 9.051664179 9.025111256 8.278285448 8.263674647 8.339938775 8.034850343 8.146141045 8.358755559 8.037328717 8.197127692 8.420481091 72119652 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.414580859 8.407054182 8.532017089 8.699092839 8.578515597 8.506211689 8.871366765 8.618434446 8.525388457 8.770882412 8.848703392 8.316293758 160935422 ara Carbon cycling Carbon degradation Hemicellulose Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 9.094760374 9.021864467 8.65620278 8.609669701 8.560675626 221535518 alkK Organic Remediation Others Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 7.540934281 7.591102225 7.647214987 7.803549455 7.478912142 8.093479286 7.679851349 7.459242159 7.476663632 71558041 pcaG Organic Remediation Aromatics Other aromatics Pseudomonas syringae pv. phaseolicola 1448A 8.244036037 8.140223201 8.450652188 8.374968583 8.516674066 8.077486128 8.111470476 8.480984359 8.515981781 8.514692265 8.324986363 8.102119764 113875969 nmoA Organic Remediation Aromatics Nitoaromatics Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 8.282446206 7.855938922 7.884820376 7.646855281 7.729446083 7.69066985 7.604567859 7.740913194 7.889323566 7.850002966 7.86082201 7.728716304 47572214 ArsC Metal Resistance Arsenic Rubrivivax gelatinosus PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 8.160071006 7.586707833 7.571837198 7.892478522 8.090275408 7.894989633 7.656021041 7.662471453 149180728 AceA Carbon cycling Carbon degradation others Bacillus sp. SG-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 8.51086695 8.553622 8.326237439 8.06853806 8.046118173 8.112188359 7.937346816 7.980001331 7.615558066 8.016277414 152977985 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Actinobacillus succinogenes 130Z superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus succinogenes; 8.566401243 8.633162985 8.488093605 7.916405894 7.79352964 7.894404869 7.668213324 7.384661426 8.063297046 7.5182134 7.310386828 7.668956568 89332551 dmsA Organic Remediation Others Desulfitobacterium hafniense Y51 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 8.030252284 8.062373848 7.097228279 7.059903581 18376631 bclA Organic Remediation Aromatics Aromatic carboxylic acid Thauera aromatica superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 8.350032048 8.091808584 8.296043302 8.169566922 8.061796287 7.828588044 7.754678298 8.402687408 8.274662971 8.34204066 8.162193523 8.367056844 260087631 clpC Stress Protein stress Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 9.178233495 9.213988538 9.043823306 8.678354641 8.668853587 8.864127474 8.718191297 8.40734294 8.727185155 8.93159803 8.979931895 8.901675025 260087378 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 9.547489161 9.309862336 9.115318813 9.37584396 9.350444652 9.260026883 9.203822777 9.784381784 9.345357434 9.629223187 9.499265981 9.483676453 124893810 ChrA Metal Resistance Chromium Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 8.751628263 8.712510493 8.949521488 8.979450256 8.794528649 8.753037425 9.032559941 8.910985871 9.27897308 9.146315048 8.676763256 84043037 Catechol Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 8.612760898 8.387808211 8.412652177 8.337434266 7.677668941 8.259143112 8.298540836 8.02869701 8.332949662 8.164343344 8.201424383 8.198347016 149819123 vanA Carbon cycling Carbon degradation Others Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 9.1974121 8.757119165 8.333641722 9.687640262 9.496975268 9.202167296 9.375696754 9.20863633 9.028297613 8.969743723 8.872952728 84623547 MFS_antibiotic Antibiotic resistance transporter Xanthomonas oryzae pv. oryzae MAFF 311018 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 8.612122021 8.344416583 8.37195924 8.331973159 8.269519982 8.049798297 8.279577031 8.463497207 8.485074457 8.311710178 7.936206981 8.133180967 117612289 iro virulence Shewanella sp. ANA-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 8.751946719 8.547588923 8.730261154 8.915698814 8.949637892 8.503198408 9.122823137 8.535077066 8.816237677 9.089248588 9.166417744 258573427 glx Carbon cycling Carbon degradation Lignin Uncinocarpus reesii 1704 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 8.402389843 8.710335006 8.628876864 7.732522488 7.773648242 8.450209508 8.238234803 8.151516777 71564287 bphA Organic Remediation Aromatics Polycyclic aromatics Terrabacter sp. HH5 8.52625779 8.583651494 8.447154551 8.278305304 7.977570316 8.041984987 8.039809781 7.731960219 8.457210741 7.874496081 7.823181026 8.030517492 147886150 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 8.272270209 8.199018383 8.069875407 7.898239355 8.043911046 7.887813804 8.400047114 7.654738744 7.528495291 7.642963292 70734322 dnaK Stress Heat shock Pseudomonas fluorescens Pf-5 7.535074023 7.57681298 7.674393865 7.602717116 7.708968181 7.805832901 7.892006375 7.770381374 7.542585826 38201085 ZntA Metal Resistance Zinc Corynebacterium diphtheriae 8.626416248 8.585997425 8.849928525 8.636065317 8.667057767 8.57319628 8.487511082 282887066 type_III_secretion virulence secretion Burkholderia sp. CCGE1001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 9.307050802 9.179452761 9.146703686 9.226463442 9.459751302 9.461522588 9.376490961 9.897591602 9.178393529 9.41036846 9.50603315 9.564703956 209963731 alkB Organic Remediation Other Hydrocarbons Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 10.23198701 10.41787408 10.46358758 9.589715397 9.73226793 9.649529214 9.748422789 9.645866654 9.861435126 9.939730783 9.961414763 10.0307748 163811733 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 8.661149349 8.913264435 8.57861368 7.533594864 7.571417149 7.386603914 7.421978601 7.662201996 7.762004102 7.580860293 7.832689557 21489737 tftH Organic Remediation Aromatics Chlorinated aromatics Ralstonia eutropha superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.138652819 8.075369842 7.295736158 7.185416199 7.267064196 7.503093621 6.945640089 7.846426679 7.175145063 7.459653115 187479668 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 8.852975289 8.589793552 8.703549996 8.172386407 8.201247508 7.966592309 8.48824389 8.673558733 8.491799719 8.60265438 8.429929886 8.552132623 119391469 narG Nitrogen Denitrification uncultured bacterium 8.595987266 8.062145036 8.23837637 8.421086944 8.384458432 7.705118985 8.122310776 8.129928117 8.227993448 7.780933117 8.133564069 7.758823873 160945094 ppk Phosphorus Phosphorus utilization Faecalibacterium prausnitzii M21/2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Faecalibacterium;species:Faecalibacterium prausnitzii; 10.92308675 10.81697091 11.14668258 10.12146383 10.36556192 9.953753347 118744903 nifH Nitrogen Nitrogen fixation Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 8.350339951 8.625546901 8.571610938 8.431247777 8.695504071 8.617079759 8.548527695 8.975039421 8.460004698 8.74774145 8.617136031 8.157607663 166368115 ppx Phosphorus Phosphorus utilization Microcystis aeruginosa NIES-843 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 8.157157 8.05258895 8.325700932 7.746651038 8.014676327 7.778235562 7.644903195 8.344716776 8.174036086 8.383809662 8.400148457 32307927 narG Nitrogen Denitrification uncultured bacterium 7.910569537 8.484235866 8.482387045 8.523896694 8.552121641 8.236838369 8.568754471 8.643461552 8.515530421 7.95176924 3157626 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 8.630753092 8.418894728 8.481318771 8.058358439 7.856407841 7.793471161 7.803707992 7.208432824 8.008646815 7.434299621 7.582496443 7.994169782 78045925 HBH Organic Remediation Aromatics BTEX and related aromatics Xanthomonas campestris pv. vesicatoria str. 85-10 8.419389842 8.404690349 8.369342177 8.391698977 8.369063474 8.24042104 8.442495914 8.738771348 8.541430216 8.499263735 8.346685699 8.741689634 9971379 gyrB other category gyrB Microscilla marina superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Microscilla; 9.319679067 9.247615417 9.36148669 8.426511864 8.351691353 8.29347993 7.960049357 7.839532013 8.352891449 8.437208126 8.453514036 8.677602059 149359228 pstB Stress Phosphate limitation Marinobacter algicola DG893 8.400541663 8.41892828 8.543396361 8.227333475 8.06229572 7.850342078 7.759868462 7.756365398 8.019686116 7.945084625 7.922429492 8.082376397 193498459 amoA Nitrogen Nitrification superkingdom:Archaea; 8.27233074 8.104639136 8.229671426 7.878284564 8.104762024 7.838845056 7.734758504 7.647973715 8.024312807 7.786302414 8.066128001 7.617620414 95108769 katE Stress Oxygen stress Pseudomonas entomophila L48 8.239726092 8.467650592 8.308225612 8.001818558 7.937936943 7.959192715 8.166713152 8.040532583 8.296146456 8.211339802 8.294285063 8.109045873 85859609 FTHFS Carbon cycling Acetogenesis Syntrophus aciditrophicus SB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Syntrophus;species:Syntrophus aciditrophicus; 8.484223054 8.309181757 8.413741419 8.013310511 7.99011656 7.698634046 7.296028911 7.921589723 7.659345728 7.40372592 7.873724588 256768200 B_lactamase_C Antibiotic resistance Beta-lactamases Streptomyces sp. C superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.443952184 8.212745061 8.396653178 7.887126844 8.008605287 8.00650762 8.10994635 7.961173399 7.982310632 7.921874048 8.140729836 164507582 nirK Nitrogen Denitrification Sinorhizobium sp. R-31759 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium; 7.471926156 7.205217113 7.348828183 7.196739735 7.361442927 7.624999369 7.273595759 7.217431109 7.075653724 146406223 nmoA Organic Remediation Aromatics Nitoaromatics Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.268217223 8.403540386 8.551543774 8.396742231 8.518000478 8.343737668 8.35269503 8.689229844 8.34457441 8.554545664 8.22283833 8.342837402 118650748 nagG Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia cenocepacia MC0-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 9.828099133 9.881632811 9.723619496 9.387426055 9.383785159 9.332493906 9.198496557 9.401409877 9.137262318 9.35602287 9.546299918 9.369117759 139478625 mer Metal Resistance Mercury uncultured actinobacterium superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 8.873033134 8.636874477 8.455551234 9.362649451 9.124657792 9.100987941 9.441758728 9.256610977 8.93307281 9.01850221 9.058150421 156523017 APS_AprA Sulphur adenylylsulfate reductase uncultured bacterium superkingdom:Bacteria; 9.001225326 9.04633672 9.282178723 8.628330666 8.429884549 8.388554812 8.256043636 8.152567708 8.528632488 8.353790239 8.237117959 8.64349313 146308720 atzB Organic Remediation Herbicides related compound Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 8.603540528 8.579416156 8.333215429 8.482522371 8.281872605 8.636413482 8.883851628 8.700858009 8.299933695 7.943996052 8.261965195 8.108116747 50954092 amyA Carbon cycling Carbon degradation Starch Leifsonia xyli subsp. xyli str. CTCB07 9.825400892 9.714882253 9.602978423 9.823921353 9.733783633 9.321187376 9.68780727 9.899534255 9.660737333 9.860283528 9.813129489 9.570193033 110679562 CopA Metal Resistance Copper Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 8.852156636 8.664075838 8.6141239 9.066629916 8.857642223 8.575186316 8.834040071 8.774202076 8.558498299 8.600996926 8.441277844 8.629829036 52080635 MATE_antibiotic Antibiotic resistance transporter Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 9.319201204 9.31596735 9.382317835 8.597351817 8.683071073 8.594593032 8.507659372 8.533703553 8.399750444 8.887109898 8.883178095 8.943547727 270154709 Ni_Fe_hydrogenase Energy process Energy process Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 8.449509767 8.468399334 7.92684771 7.675139229 7.394030914 7.559908677 7.932729902 7.432919394 7.551196745 7.717113967 146305079 type_III_secretion virulence secretion Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 8.335196511 8.531193933 8.330206452 8.5903382 8.35380895 8.269657045 7.539172308 8.055007712 8.251040746 8.486523868 8.121705522 186909389 amoA Nitrogen Nitrification superkingdom:Bacteria; 7.273525741 7.045262233 145602957 pheA Organic Remediation Aromatics Other aromatics Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 9.948283169 9.861897329 10.00871762 8.919225739 8.735831127 8.621054129 8.58071939 8.760991359 9.484337415 8.846231733 8.907826057 8.832578661 219947318 ahpC Stress Oxygen stress Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 8.67674522 8.319073802 8.231989183 7.827767588 8.00972585 7.600975653 8.144374325 7.802654294 7.781997362 7.808301024 8.135534927 254255096 SMR_antibiotics Antibiotic resistance transporter Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 9.692940087 9.143742856 9.34362241 8.715617897 8.902855773 8.83967043 9.173456491 8.8287126 9.402817708 9.335679322 9.416259852 9.404953394 161158861 hrcA Stress Heat shock Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 9.533150719 9.500343857 9.386417963 8.967523854 8.681672957 8.939891408 8.773873751 8.527958899 8.723467868 8.740195165 8.810629143 9.099228314 171684905 AceB Carbon cycling Carbon degradation others Podospora anserina superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 9.048519993 8.972490681 9.189229375 8.461721034 8.421137489 8.292707563 8.443099056 8.542802677 8.329759193 8.592986308 8.420691711 8.803889711 161787086 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 8.875695762 8.778339812 8.912648058 8.287392062 8.119298694 8.154778938 7.964980983 8.179098626 8.251720264 8.054684956 8.050551256 8.344189339 54018723 trzN Organic Remediation Herbicides related compound Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 9.614307374 9.63013664 9.171068806 9.285588161 9.401833437 9.729128942 9.250126185 9.344110252 8.706858251 9.028046714 8.985546455 182416029 ureC Nitrogen Ammonification Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 9.402054892 9.08824339 9.092443342 8.696446829 8.552743041 8.462017234 8.534557096 8.581959415 8.597319696 8.531668274 8.531339739 124258969 vanA Carbon cycling Carbon degradation Others Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 9.07058037 9.153023164 9.341095828 8.668785855 8.680890908 8.56577107 8.511067047 8.708180679 8.630502956 8.845976202 8.734760899 8.936677935 84382579 pimF Organic Remediation Aromatics Aromatic carboxylic acid Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 9.032953592 8.549612157 8.793922502 8.543253744 8.537669245 8.345726755 8.392927703 8.468119363 8.355802654 8.415795739 8.218374871 8.152814615 225568119 ppk Phosphorus Phosphorus utilization Clostridium hylemonae DSM 15053 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 8.315328021 8.164233135 8.634079725 8.599337824 8.208741726 8.610524361 8.465874661 8.430988853 8.680196299 8.62961496 8.156319039 170691185 xylA Carbon cycling Carbon degradation Hemicellulose Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 8.25617412 8.049735516 8.399640465 8.290968444 8.112268327 8.35207314 8.453123955 8.652048796 8.816725244 8.608748337 8.460164891 119957390 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 9.411658651 9.296075789 9.432582732 8.751992829 8.78943931 8.772564407 8.658544216 8.326597448 8.758664134 8.720247324 9.026080788 8.913022581 68342649 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.713740022 8.793932884 8.808435072 8.264277276 8.2238421 8.14949634 7.838838998 7.914982786 8.126620698 8.215596629 8.263015911 8.239517261 45269099 bphC Organic Remediation Aromatics Polycyclic aromatics Rhodococcus pyridinivorans superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.561711293 8.914564012 8.874159958 8.414680221 8.608927322 9.075243833 9.246277169 8.838752611 8.899552972 8.809475649 8.743784706 8.805915409 260921331 AceA Carbon cycling Carbon degradation others Brucella ceti B1/94 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Brucella;species:Brucella ceti; 8.786596546 8.866833751 8.854772576 8.774173029 8.649223086 8.444352752 8.845625591 9.181507836 8.843514465 8.974362956 8.787680525 8.854438575 196477504 fnr Stress Oxygen stress Phenylobacterium zucineum HLK1 8.854604946 8.625395332 8.725109342 8.406592118 8.325274736 8.180521034 8.287775709 8.017600303 8.304525738 8.264485616 8.310045114 8.602054386 218519501 fnr Stress Oxygen stress Acidithiobacillus ferrooxidans ATCC 23270 8.186025433 8.143541714 7.237958656 7.4366969 7.359662002 7.125270307 95134445 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Desulfuromonas acetoxidans DSM 684 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Desulfuromonadaceae;genus:Desulfuromonas;species:Desulfuromonas acetoxidans; 8.320522113 8.487505565 8.453645497 8.176174183 7.776387441 7.609914048 7.801844584 7.631595589 7.775774931 7.687948258 7.427873746 33320478 dsrB Sulphur sulfite reductase Desulfobacterium oleovorans superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus; 7.878444384 8.098033806 7.943360292 8.232794368 8.110353352 7.497055097 8.193905948 8.282477972 8.135250691 8.263306804 7.912597185 7.871531459 154147972 cydB Stress Oxygen limitation Campylobacter hominis ATCC BAA-381 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter hominis; 10.05874941 9.697570687 9.97063304 9.628922738 9.718474934 9.800449569 9.923217852 9.612614909 9.926704073 10.01292983 10.02749086 9.773057341 147886172 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 9.268865327 9.484839736 9.631832992 8.716430245 8.672869067 8.55358596 8.348709964 8.350877436 8.581866703 8.615172811 8.804145045 192284125 PobA Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.59378835 8.372418228 8.423232918 8.500858469 8.690204469 7.936928406 8.711222137 8.426775367 8.55581427 8.781272462 7.969854348 117607123 narI Stress Oxygen limitation Magnetococcus sp. MC-1 superkingdom:Bacteria;phylum:Proteobacteria;genus:Magnetococcus; 9.361689511 9.216100152 8.807571582 7.929161786 8.613398615 9.141004421 7.898786892 8.725318899 8.134029707 7.970129634 8.024334691 146403045 biotin_carboxylase Bioleaching Carbon fixation Acidiphilium cryptum JF-5 8.52111504 8.352740438 8.307791442 8.124493162 8.390360442 8.184100969 8.195137228 8.376918228 7.927702939 111019975 xylC Organic Remediation Aromatics BTEX and related aromatics Rhodococcus sp. RHA1 9.35070642 9.21433181 8.941253952 9.219339348 8.984394642 8.511047057 9.11109953 9.076574057 8.90521301 8.869226008 8.795143829 8.812123262 22298333 dnaK Stress Heat shock Thermosynechococcus elongatus BP-1 8.476012947 8.360066259 8.440955134 8.036276797 7.867316355 7.579165696 7.812670154 8.594888677 8.133542898 8.401211828 8.28752117 118032137 phtA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 9.154164798 9.113373139 9.146096893 8.682209111 8.721568913 8.372266917 8.509268182 8.475570585 8.358730524 8.419420544 8.308379337 8.50277359 163792984 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 9.230243933 9.314439271 9.311741337 8.68772563 8.715024226 8.622904839 8.590935178 8.56677837 8.657152964 8.801084774 8.706230224 8.682437213 33322839 gyrB other category gyrB Lactobacillus delbrueckii subsp. lactis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus delbrueckii; 8.63749634 8.389959042 8.70961837 8.029508079 7.888533304 7.88715054 7.646427335 7.763720115 8.168714564 7.819660755 7.758923578 8.090371118 88919055 CopA Metal Resistance Copper Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 9.951398203 9.876830317 10.1599737 9.457591554 9.305875655 9.264473182 9.394353637 9.262578577 9.236730506 9.32549517 9.311343967 9.56470926 28897644 alkK Organic Remediation Others Vibrio parahaemolyticus RIMD 2210633 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.471329645 7.491719597 7.89807904 7.325158906 7.659304829 8.02040966 7.451815612 7.436892959 7.462776692 146409927 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.841081602 8.651093766 8.975461096 8.965780652 8.78561386 9.058884985 9.081944818 8.917352945 9.01100749 8.993811039 8.651720572 161380216 CopA Metal Resistance Copper Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 9.226063392 9.150038572 9.002773572 8.778010026 8.608728909 8.549913221 8.62234247 8.52316961 8.825475704 8.625121494 8.57365592 8.918428285 227164126 SMR_antibiotics Antibiotic resistance transporter Proteus mirabilis ATCC 29906 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 8.168377156 8.203227905 7.473523253 7.576039446 7.639844101 7.551340491 7.386207674 7.864313226 7.517682671 7.435646778 7.702162627 238885480 sigma_70 Stress Sigma factors Selenomonas flueggei ATCC 43531 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas flueggei; 8.624801054 8.421373997 8.347060611 7.759761394 7.760110941 7.842618261 7.947469126 7.734139349 8.067972342 7.676664411 7.798341057 7.94191164 166028472 ppk Phosphorus Phosphorus utilization Dorea formicigenerans ATCC 27755 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Dorea;species:Dorea formicigenerans; 8.90061638 8.755704272 8.774494029 8.609000499 8.22921834 8.217728824 8.14162247 8.239945777 8.368794725 8.102991891 8.235623941 8.368706163 206579098 ZitB Metal Resistance Zinc Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 8.724431074 8.661359521 8.733450427 8.787016344 8.890284203 8.64904579 8.677680077 8.919696462 8.723596303 8.814708077 8.916020046 8.816452335 255108555 pstB Stress Phosphate limitation Sideroxydans lithotrophicus ES-1 8.607847718 8.187097521 8.293054382 7.676152394 7.791206844 7.737618438 8.001315724 7.849649114 8.198216316 8.348721232 8.284995324 8.092955439 24474367 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 8.199458974 8.064272791 7.641556195 7.718051353 7.690569542 7.406245039 7.82466744 7.460497592 7.548222171 7.810010011 75859124 ara_fungi Carbon cycling Carbon degradation Hemicellulose Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 8.599120193 8.739211837 8.736919801 8.420860976 8.158510979 8.053412518 8.1439914 8.141781857 8.322463374 8.24162451 7.730898569 8.296047265 218221760 sigma_24 Stress Sigma factors Parabacteroides johnsonii DSM 18315 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides johnsonii; 8.482189117 8.29606868 8.182946241 8.219668584 8.068312686 8.038273221 8.122919113 8.18950713 8.348305991 8.091700312 8.170448998 8.056482729 148993543 srt virulence surface protein Streptococcus pneumoniae SP9-BS68 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus pneumoniae; 8.500837122 8.420043164 8.148683623 8.377870091 8.383139014 7.720225328 8.09964084 7.804295291 8.237538713 8.316800258 8.073926187 148548493 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.63267532 8.753130008 8.514999359 7.875711084 7.794600798 8.005282843 8.158419344 7.799404752 8.531590483 7.802998992 7.959373262 7.766452089 157407597 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 8.943490642 8.857290893 9.017122053 8.933894531 8.907626104 8.994767777 8.889436291 9.251370603 8.953964384 9.199289234 9.141213184 9.137727861 7769067 arsenic_resistance_gene Bioleaching Metal Resistance Acidithiobacillus ferrooxidans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus; 8.283214723 8.398919672 8.187900555 8.707776102 8.729726232 8.474402726 9.297577551 8.514315542 166065001 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.090897045 8.548663276 8.410873843 8.392155177 8.477354987 8.418732002 8.478594748 8.612626918 8.645748767 8.743628719 8.62935242 8.35086549 254507402 pilin virulence pilin Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 8.758276296 8.542463438 8.485925545 8.11817967 8.10515141 8.033117964 7.820788332 7.49293231 8.047038129 7.768969874 7.812825564 7.998178894 39985190 nrfA Nitrogen Dissimilatory N reduction Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 8.599738317 8.380414013 8.458906386 8.121920939 8.222859139 8.146409694 8.409929384 8.451524326 8.464265841 8.304570448 187477404 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 8.582202986 8.548145883 8.864781323 8.902428425 8.892951541 8.711141156 8.55420046 9.031034072 8.57430519 8.74351091 8.729971422 9.156858169 27348472 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 9.090403623 9.318419398 9.317886793 8.43110762 8.486402848 8.714410985 8.970796278 8.6602302 9.04637404 8.379295824 8.388257745 8.693935032 256833294 pstA Stress Phosphate limitation Jonesia denitrificans DSM 20603 8.274698157 8.603491548 8.247784158 7.777881774 8.391636569 8.42389205 8.233241856 8.669452975 7.851166432 8.408878298 8.500641121 8.370591505 170027493 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 10.23110975 9.987906458 10.11775305 9.540570238 9.667307683 9.422892097 9.339757484 9.744555403 9.725016651 9.714633546 9.892883455 9.993653519 33391477 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.310669961 8.281456545 7.946950571 7.887890642 8.222176152 8.501832931 8.079009906 7.57373453 7.741883186 7.651758456 162448438 nmoA Organic Remediation Aromatics Nitoaromatics Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 8.78719341 8.835401923 8.744690381 8.536940645 8.464543872 8.501311381 8.401331509 8.487650356 8.804971711 8.481547201 8.570956061 8.457512476 148257108 phn Organic Remediation Herbicides related compound Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.166315873 8.290040838 7.604823708 7.70337257 8.032274978 7.615289396 8.209337513 8.157893041 8.140959932 7.735275529 221726276 TerC Metal Resistance Tellurium Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 9.222657202 9.355136488 9.135480221 9.71137996 9.786029703 9.62725012 9.429129762 9.905147594 9.41615117 9.82648795 9.807286473 9.696604361 146310812 CusF Metal Resistance Copper Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 7.942424493 8.056951092 8.296259256 8.05525503 7.953210118 7.332986857 8.036960345 7.729377142 7.705240054 7.712081156 7.71882422 150396087 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 8.925644991 9.028813644 9.009819824 8.343539934 8.509563905 8.685619307 8.829185326 8.409995851 8.804508725 8.436348164 8.633309056 8.75189148 116205547 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 8.630541623 8.611559682 8.699859603 8.440192781 8.296442331 8.221698299 8.266673705 8.422045529 8.351206175 8.441923352 8.517725091 8.556714619 94311454 ChrA Metal Resistance Chromium Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.818515728 8.893750815 8.660994334 8.695049317 8.74387821 8.647679129 9.315828797 9.030068356 8.775394764 9.053047212 9.121681381 270042169 pilin virulence pilin Serratia odorifera 4Rx13 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia odorifera; 8.802921275 8.709883839 8.72781645 8.986909836 8.70377316 8.192934744 8.560601211 8.470750922 8.610489875 206577417 MATE_antibiotic Antibiotic resistance transporter Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 8.947945096 9.005830875 8.882175157 9.085599907 8.678634238 8.414564961 8.711274494 8.942175073 8.752189054 8.699577788 8.712942018 8.423547633 119962401 atzB Organic Remediation Herbicides related compound Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 9.160851653 9.206418401 9.093878653 8.796995264 8.811876312 9.154800327 9.290461537 9.101166655 9.213074117 8.870263611 8.98695954 8.837828619 149176966 groEL Stress Heat shock Planctomyces maris DSM 8797 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces maris; 8.121771553 8.467817425 8.122378663 7.472915578 7.606911226 7.899088096 7.359927165 7.830091597 7.814684576 7.849436404 7.955986082 83954666 sox Sulphur Sulphur oxidation Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 9.296509076 9.237566657 9.121973407 9.127450981 9.12127773 8.826843811 8.915007697 9.130482245 9.08077792 8.995766192 8.931027678 9.153501547 110347229 CadA Metal Resistance Cadmium Mesorhizobium sp. BNC1 8.060523329 8.107706748 7.490651619 7.807805826 7.80001837 7.481349663 7.759142941 7.467360038 7.545276952 7.72910738 68349021 nirS Nitrogen Denitrification Pseudomonas sp. C10-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 9.454247542 8.988357431 8.562562313 8.907573744 8.282229149 8.239858742 8.724608601 8.797588062 8.358674549 8.542414618 8.193302909 150956671 ArsC Metal Resistance Arsenic Klebsiella pneumoniae subsp. pneumoniae MGH 78578 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 8.356367047 8.002100396 8.005328172 7.624534525 7.611674172 7.656796962 7.654632568 7.380210912 7.578880293 7.427182552 84042967 Catechol Organic Remediation Aromatics Other aromatics uncultured bacterium 8.514543014 8.515866147 8.423443482 7.965000554 8.049210875 8.112243686 8.337231056 8.418092004 8.189573231 8.33400523 8.291510445 8.335827043 229611223 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.949027409 8.847646371 8.962083397 8.194362441 8.162588522 8.417416193 8.589420705 8.46287896 8.456593048 8.281190326 8.431146864 171057485 bphA Organic Remediation Aromatics Polycyclic aromatics Leptothrix cholodnii SP-6 9.454054192 9.564089874 9.106224713 8.831294794 8.988893365 9.141922542 9.467913181 9.091530415 9.421200862 9.423635282 9.418658072 90588319 nbaC Organic Remediation Aromatics Nitoaromatics Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 8.167649505 8.079941835 8.255401493 7.86136907 7.988497538 7.915238887 7.476890741 7.57180313 7.893691947 8.087560125 8.296113268 8.12650931 85823677 HBH Organic Remediation Aromatics BTEX and related aromatics Roseobacter sp. MED193 8.068829613 7.501372431 7.217379312 7.578058966 7.977586327 7.724224147 7.565938324 7.730601763 146402524 pcaG Organic Remediation Aromatics Other aromatics Acidiphilium cryptum JF-5 9.524428299 9.181005552 9.005045124 9.752236474 9.463595906 9.511241662 9.671061437 9.478543158 9.387863717 9.224769696 9.562870504 9.218865195 219540040 atzA Organic Remediation Herbicides related compound Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 8.101362606 7.927614465 7.374701108 7.329747763 7.345377178 229567699 xylA Carbon cycling Carbon degradation Hemicellulose Beutenbergia cavernae DSM 12333 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Beutenbergiaceae;genus:Beutenbergia;species:Beutenbergia cavernae; 8.642927992 8.653566945 8.220324916 7.719508187 8.285576553 8.627858444 8.15769659 8.613171919 8.10130301 8.363369355 8.034480692 115517964 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.958998887 9.924122602 9.810617662 9.38287481 9.548435746 9.458451941 9.853248944 9.690365799 10.24736416 9.700705827 9.717477387 9.747079509 256362602 obgE Stress Radiation stress Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 9.199457567 9.10423794 8.968223842 8.953833212 9.179908234 9.104467519 9.539765397 9.160678328 9.002112135 9.131554973 9.414095884 9.194808485 238632213 phenol_oxidase Carbon cycling Carbon degradation Lignin Coriolopsis gallica superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Coriolopsis; 8.538010942 8.199353807 8.451833409 8.492563486 8.416137693 8.321530058 8.578646599 8.663814092 8.393418702 8.110240534 8.32827255 241216073 sigma_24 Stress Sigma factors Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 9.364295544 9.422689351 9.205388643 9.555341301 9.804005582 9.523515773 9.631971598 10.23243304 9.010314616 9.800315811 9.675099396 194290926 pimF Organic Remediation Aromatics Aromatic carboxylic acid Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 8.043095162 8.630578468 7.630769771 7.818035381 8.218407881 8.267425221 7.524101556 8.550754611 7.528058529 8.077615378 8.035956986 116201105 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 8.614653535 8.926718819 8.599499595 8.255480644 8.788880406 8.991139591 9.145849624 8.966666193 8.931246461 9.390303636 9.488766254 9.145722914 89952053 ahpF Stress Oxygen stress Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 8.656819038 8.837927556 8.924273366 8.806464477 9.022363358 8.899978019 8.975337005 9.239681624 8.790672813 229825541 Tet Antibiotic resistance other Abiotrophia defectiva ATCC 49176 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Aerococcaceae;genus:Abiotrophia;species:Abiotrophia defectiva; 6.562604782 7.158428643 207739251 glnA Stress Nitrogen limitation Ralstonia solanacearum IPO1609 9.046698984 9.018381383 8.32275942 9.367337994 9.140231255 9.104649092 9.038620168 9.613616966 9.146131259 8.994794122 9.171031504 9.17783835 91788891 Arylest Organic Remediation Aromatics Other aromatics Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 9.220975122 8.710145612 8.878365319 9.15450722 9.175234545 9.034447964 8.594435535 9.389234034 9.190348006 9.194352762 9.391187456 118568398 pstB Stress Phosphate limitation Mycobacterium ulcerans Agy99 8.750941028 8.386954259 8.788465617 8.428084912 8.220746452 8.041499351 8.152748528 8.306087191 8.207304401 8.168934537 8.180349344 8.151940236 39995179 cytochrome Energy process Energy process Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 8.714511662 8.646669315 8.545692019 8.943008493 8.894357253 9.029605824 8.649839743 8.286664457 8.657932687 8.609126467 8.603838472 8.504876384 259021216 fnr Stress Oxygen stress Rhodobacter sp. SW2 8.81452978 8.734596124 8.476690709 7.635028057 7.883915395 7.937191211 8.205243272 7.636084427 7.908062106 7.746785006 8.380628348 267983146 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella tarda; 9.825535338 9.794805615 9.793549693 8.606476076 8.791993945 8.557852178 8.481395858 8.693320149 139478587 mer Metal Resistance Mercury uncultured soil bacterium superkingdom:Bacteria; 9.472254539 9.500407047 9.742302706 9.301120844 9.09949433 8.725464502 8.838949919 8.969366858 8.996283546 8.878910206 8.910046506 9.061606614 38198987 sigma_24 Stress Sigma factors Corynebacterium diphtheriae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium; 8.265732868 8.381737849 8.301656789 7.333165925 7.833642877 7.882344284 8.33829936 8.471393187 7.768032812 7.846773042 7.934314802 26891726 contractile_tail_sheath_protein Bacteria phage STRUCTURAL Vibrio phage VHML order:Caudovirales;family:Myoviridae; 8.801525547 8.865675661 8.954419666 8.877550711 8.642830117 8.589450243 9.358298724 9.254147521 8.777507208 9.016276899 8.841970071 8.628509672 228895624 pstA Stress Phosphate limitation Cellulomonas flavigena DSM 20109 8.922943892 8.579244717 8.707547383 8.590914664 8.465754533 8.23607688 8.392874526 8.769541521 8.863515788 8.592128854 8.407729388 8.545112634 219680484 bphA Organic Remediation Aromatics Polycyclic aromatics gamma proteobacterium NOR51-B 9.365648412 9.209467879 9.393067793 8.293656566 8.100682144 7.860936979 7.737674353 8.322768249 8.197175038 8.272375922 8.275685058 8.47048974 254559345 sox Sulphur Sulphur oxidation Methylobacterium extorquens DM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 8.673455009 8.617261218 8.755031831 8.295711181 8.560119075 8.541572821 8.630338957 8.631407099 8.551822034 8.477497914 8.807178283 8.29509303 118424419 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.778378953 8.499859866 8.52751921 8.477949519 8.268518297 8.758516524 8.583070768 8.490652661 8.893808344 8.892566381 8.392298708 14523368 trzN Organic Remediation Herbicides related compound Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 8.196199091 8.439756984 8.256022925 8.236401259 8.136727075 8.244729057 8.180887513 8.31291339 8.561868571 8.633569363 8.547021486 8.28339139 75674709 phoB Stress Phosphate limitation Nitrobacter winogradskyi Nb-255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 9.721730014 9.596875489 10.04690329 8.953093171 8.961907852 8.957376728 9.046557602 8.671115842 9.192758937 9.124790129 9.29885221 9.259481655 179345284 CopA Metal Resistance Copper Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 9.654453395 9.692026525 9.692146489 9.0976512 9.043766799 8.996956499 8.994792981 8.824827888 8.9948612 8.8432264 8.98453323 9.150246056 159044396 scnABC Organic Remediation Others Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 9.27384961 9.31899838 9.145414919 9.093659876 9.177471041 8.877953551 8.767192138 9.124058733 8.922500354 9.121064833 9.143110692 9.337327475 256769924 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces sp. C superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.134493882 7.912391301 7.122467087 7.522412501 7.284093641 7.562753073 7.036492146 258560757 amyA Carbon cycling Carbon degradation Starch Corynebacterium genitalium ATCC 33030 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium genitalium; 8.61673562 9.007719185 8.885120119 8.563401932 8.591861555 8.459800139 8.685120982 8.871866781 8.749417874 9.021249558 8.803825748 8.699640898 163857338 silC Metal Resistance Silver Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 7.992773005 7.980540508 7.844979533 7.441724079 7.646114633 7.968273017 7.905743579 7.787770421 7.966540779 7.884607487 7.471698034 15076977 CDD Organic Remediation Aromatics Other aromatics Pseudomonas sp. JR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 9.190674928 9.301777273 9.468644438 9.307543858 9.05030018 8.977539426 8.736411852 9.206725576 8.662034919 9.068801379 9.160062093 9.036755281 183985031 bphC Organic Remediation Aromatics Polycyclic aromatics Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 8.889817819 8.73312177 8.604365413 8.546895289 8.663226824 8.862275175 8.295885186 8.41918063 8.413950105 8.450773367 8.801604558 8.496822444 170690278 MFS_antibiotic Antibiotic resistance transporter Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 8.953048899 8.223034851 8.65937204 8.547188864 8.361832515 8.464796278 8.409665303 8.301849007 8.46357648 8.435714121 8.181704014 118471252 nmoA Organic Remediation Aromatics Nitoaromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 9.298170122 9.192382637 8.997975235 8.444634664 9.059447958 9.255061399 9.578237433 8.074226725 9.179574241 8.477029206 8.626422019 8.817837948 259419216 obgE Stress Radiation stress Silicibacter sp. TrichCH4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8.933501792 9.064746674 9.033878932 8.573057009 8.512700098 8.43328138 8.388186108 8.619086079 8.596708398 8.778267537 8.733954987 8.742867671 227195441 Tet Antibiotic resistance other Lactobacillus ruminis ATCC 25644 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus ruminis; 8.374178826 8.102155734 8.178441921 7.625509051 7.383829563 7.684614834 7.789643222 7.395677917 8.329131993 7.568930036 7.530049145 7.961917947 144897437 fnr Stress Oxygen stress Magnetospirillum gryphiswaldense MSR-1 8.552299229 8.741951657 8.577453199 8.311987003 8.286700722 8.116566944 8.160057292 8.590059143 8.429489824 8.377118971 8.053524049 8.430462316 146341632 nifH Nitrogen Nitrogen fixation Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.524817106 8.490070593 8.244051181 8.552796565 8.786625051 9.082463601 9.182695618 8.796720931 8.789693505 8.818216481 9.155120602 8.696270497 39578147 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.731746103 8.386130382 8.286649442 8.484911383 8.006955727 7.982576885 8.048876953 8.242455017 8.161313882 8.250461713 7.78579771 87136287 pcc Carbon cycling Carbon fixation Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 9.75953906 9.490507769 9.651140007 9.932350789 9.753026169 9.363603234 9.546166291 10.16549619 9.606881383 9.858277985 9.432724724 9.87017865 158138745 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 10.06952585 9.790340282 9.95116244 9.957403442 9.859342515 9.648098572 10.04110778 9.974552056 9.577226379 9.838548851 9.740404544 10.04720388 194364685 iro virulence Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 9.313534423 9.177241284 9.044923776 8.459092244 8.949906418 8.803118721 8.988508581 8.641837492 9.171662325 8.64414418 8.682313572 8.666421641 167621685 MFS_antibiotic Antibiotic resistance transporter Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.456472299 8.461508519 8.735972837 8.72135011 8.710715529 8.176181619 8.693807284 8.043761049 8.575343315 8.424490497 9.048585692 35764426 cumA Organic Remediation Aromatics Other aromatics Rhodococcus sp. RHA1 8.553875976 8.472166488 8.748291306 8.694864421 8.455240867 8.439858725 8.372909365 8.758944141 8.529202652 8.719208159 8.466047404 8.496479937 118618491 TehB Metal Resistance Tellurium Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 9.1102125 9.343588866 9.509603887 8.89830847 8.719388173 8.683764564 9.099681438 8.765123636 9.079967209 8.951112186 8.858191557 9.006384938 134134270 narH Stress Oxygen limitation Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 9.142182303 8.93748133 9.0355997 8.223015572 8.289521884 8.203407436 8.1713463 8.058631199 8.164899354 8.040329102 8.488473252 260089470 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 9.512777024 9.584173583 9.405642654 8.67250703 8.691874617 8.459106298 8.592130698 8.763615134 8.915792377 8.82178819 8.799254231 8.806334794 66845524 endoglucanase Carbon cycling Carbon degradation Cellulose Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 9.238046224 8.819765746 8.893988247 9.449866323 9.424074034 9.186801579 9.5366085 9.285922572 9.405566441 9.386866246 9.429096173 9.327249876 83316848 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.729171168 9.568313328 9.770898795 9.227154191 9.302945817 9.208335904 9.487562191 9.590617343 9.602045265 9.717694137 9.662048386 9.720642668 27352490 SMR_antibiotics Antibiotic resistance transporter Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.113376538 8.362253856 8.405768801 8.121624121 8.384078428 8.201975191 8.519892488 8.31574576 8.455741039 8.469952075 8.565413512 8.223725213 206685037 sox Sulphur Sulphur oxidation Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.742449113 8.139937532 8.330358831 8.218430309 8.014727046 8.303084802 8.252288644 8.15255851 8.105554071 8.296236788 8.317031277 16580707 mnp Carbon cycling Carbon degradation Lignin Phlebia radiata 8.471799855 8.659919497 8.835889981 7.72143242 8.186721927 8.720883523 8.792683101 7.776418396 8.428261186 7.717105531 8.185124985 8.53195572 119373573 atzC Organic Remediation Herbicides related compound Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.542778475 8.33386469 8.518284424 8.457807077 8.643375654 8.648453768 8.026426968 8.637221392 8.351990955 8.447342423 8.453402564 8.445746873 227993511 cellobiase Carbon cycling Carbon degradation Cellulose Meiothermus ruber DSM 1279 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 9.124634148 8.715656808 8.803180976 8.288725979 8.196107752 8.412773294 8.74648467 8.286520176 8.955500345 8.468389499 8.609957848 8.719048363 108798225 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium sp. MCS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 9.919854828 10.14569809 10.11760988 9.322725979 9.274486287 9.440781671 10.18944179 9.581769944 10.45042234 9.321771786 9.045115533 9.349029126 156233627 cda Carbon cycling Carbon degradation Starch Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 8.169797428 8.001065042 8.374988016 7.751057532 7.527034009 7.580755913 7.423347657 7.233576644 7.739807624 7.37600881 7.368189567 7.176836148 225520527 sigma_70 Stress Sigma factors 'Nostoc azollae' 0708 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena azollae; 8.298737399 8.168349404 7.387299845 7.438470968 7.321273864 6.958305602 7.482361182 7.394057422 7.131098451 7.313084302 83592767 fnr Stress Oxygen stress Rhodospirillum rubrum ATCC 11170 8.180225131 8.334505644 8.001282446 7.24853829 8.183930055 7.366605094 7.416864096 42558528 ZntA Metal Resistance Zinc Comamonas sp. B0039 9.252184121 9.05947291 9.232580977 8.698713912 8.599349226 8.468635275 8.468375688 8.826629454 8.686498191 8.738109098 8.66214963 8.756279133 27351040 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.767330423 8.611989972 8.57466875 8.495965819 8.271120637 8.089754649 8.704923474 8.628350794 8.801040126 8.552311925 8.55620842 8.724552476 149377179 pcc Carbon cycling Carbon fixation Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 10.71809814 10.5468097 10.38051523 9.730792809 10.04072329 9.614725496 9.529350875 9.807195668 10.02831085 10.29487137 9.91610857 134103041 CopA Metal Resistance Copper Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 8.552169606 8.68159163 8.486954882 9.092497259 8.914476563 8.507459053 8.77638845 9.507511321 8.927370546 9.220337197 9.019458353 9.094698535 218169885 amyA Carbon cycling Carbon degradation Starch Cyanothece sp. PCC 7424 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.925918169 8.329962773 7.583801977 7.406903969 7.406694497 7.493024731 7.311351067 7.638698271 7.199535453 7.566416409 118173092 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.197341242 8.060268855 7.605302098 7.601511807 7.844347246 7.739970286 8.010287092 8.002794173 7.937336206 7.956165595 108764320 atzC Organic Remediation Herbicides related compound Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 9.05217982 9.177178414 9.109801617 8.611548935 8.573003191 8.819748169 8.751629723 8.673227461 8.632754222 8.533983658 8.683885751 8.962653831 149822467 gyrB other category gyrB Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 8.874508963 8.667767533 8.788195154 8.15635261 7.916709246 8.262904578 8.295963079 8.480799036 167074384 scnABC Organic Remediation Others Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 9.201032754 9.264475074 9.235959767 8.87568197 8.46282443 8.905278533 8.649276474 8.698293856 9.019644452 8.782174704 8.864698995 9.081978394 121543059 mer Metal Resistance Mercury Candidatus Desulfococcus oleovorans Hxd3 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus;species:Desulfococcus oleovorans; 8.425985167 8.427866879 8.329091955 7.88060857 7.765874872 7.853351179 7.701341233 7.67989438 7.528199505 7.501218069 7.751509117 89100479 sigma_70 Stress Sigma factors Bacillus sp. NRRL B-14911 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 8.229487952 8.318785436 8.427912254 7.831355921 7.793792915 7.64439849 7.581117031 7.453466001 7.551401434 7.752801024 8.066342679 218885374 hydrogenase Energy process Energy process Desulfovibrio vulgaris str. 'Miyazaki F' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 8.426996662 8.349183614 7.945656516 7.757050287 7.922180694 8.076748674 7.705173617 8.047145074 8.095510657 8.008107749 283949081 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Conexibacteraceae;genus:Conexibacter;species:Conexibacter woesei; 8.19915518 8.189538327 7.7022017 7.933344013 8.076300262 8.056349709 8.052060155 8.164266283 8.142002508 8.218455875 8.094346421 118171653 pcaG Organic Remediation Aromatics Other aromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.612014342 8.403419251 8.422812109 8.482453072 8.241899146 8.118798023 7.922920487 7.864220063 8.324904262 8.164363716 7.937272622 8.392476789 4996790 gyrB other category gyrB bacterium rM1 superkingdom:Bacteria; 7.819706774 7.435809373 7.236227058 6.960629574 7.23499684 7.678054946 7.360738721 7.183168863 7.373899793 167950178 pstA Stress Phosphate limitation Endoriftia persephone 'Hot96_1+Hot96_2' 9.37565335 9.642384959 9.009906482 8.413999434 8.611801663 9.065584844 8.977254174 9.106016379 9.014223166 161380241 pstB Stress Phosphate limitation Oceanibulbus indolifex HEL-45 8.441068037 8.510911635 8.23711093 8.394986415 8.318424144 8.364835136 8.610914195 8.463754277 8.583747135 8.418631941 8.394805601 8.43341971 218549628 iro virulence Escherichia fergusonii ATCC 35469 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia fergusonii; 9.090011869 8.891922362 9.059288733 8.612184484 8.512059673 8.259149965 8.323737275 8.65536399 8.870448235 8.61065984 8.526258099 8.515136697 170721876 Catechol Organic Remediation Aromatics Other aromatics Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 9.999040922 10.0172561 10.12845715 10.00792867 9.914084151 10.01779912 10.57845812 10.18919504 9.996399726 10.31282053 10.38794696 10.26594278 189186376 pmoA Carbon cycling Methane Methane oxidation Methylacidiphilum infernorum V4 superkingdom:Bacteria;phylum:Verrucomicrobia;order:Methylacidiphilales;family:Methylacidiphilaceae;genus:Methylacidiphilum;species:Methylacidiphilum infernorum; 8.400448513 8.678882308 8.477772522 7.867748696 7.790056473 7.730703796 7.714312885 7.723579602 8.150047416 7.547267927 7.344765862 7.818181567 31747717 nif_II Bioleaching Nitrogen Leptospirillum ferrooxidans 7.840460222 7.834810826 7.888737586 7.730142561 7.558823747 7.645796776 7.503127774 7.775292322 146400990 glycosyl_transferase_EPS Bioleaching EPS Acidiphilium cryptum JF-5 8.584811285 8.78065797 8.78474165 8.056375731 8.377387027 8.139653504 7.680376936 7.526568383 8.140962992 7.905473574 7.959311064 8.348654961 134284881 pstB Stress Phosphate limitation Magnetospirillum gryphiswaldense MSR-1 8.90171351 9.07212464 8.891284982 8.277694902 8.675501639 8.644281498 8.628218952 7.730336509 8.910635811 8.358766676 8.408615326 8.29300178 212171574 alkB Organic Remediation Other Hydrocarbons Corynebacterium variabile superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium; 8.528794894 8.502935048 8.489180103 7.925914795 7.946442204 8.003569094 8.417623924 7.654200493 8.786487594 7.808173963 7.651678608 8.019433106 149736210 CopA Metal Resistance Copper Eubacterium ventriosum ATCC 27560 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium ventriosum; 7.596513955 7.518927202 7.903374242 7.79351465 7.543415919 7.994252866 7.846472194 7.59741245 7.723989484 211957156 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 8.620509474 8.234126005 8.389977015 8.803637429 8.759655593 8.578608608 8.379621941 8.540971819 8.525238423 8.45266619 8.203839468 163259422 BADH Organic Remediation Aromatics Other aromatics Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 8.405334568 8.121059389 8.376185535 8.14511375 8.282304545 7.866742468 8.262192398 8.623011611 8.646219397 8.360880733 8.228954742 8.424160783 224800065 sigma_24 Stress Sigma factors Opitutaceae bacterium TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 9.058899307 9.176284016 8.891602727 8.921410013 9.301949379 9.166748003 9.213777258 9.607948989 8.925276451 9.406153486 9.526755236 9.48145797 46409941 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.355390182 8.141801003 8.014511219 8.221180496 8.041792314 8.147262651 7.796929018 8.043392434 209486087 nirS Nitrogen Denitrification uncultured bacterium 8.455809267 8.534692399 8.663783924 8.054774377 8.233526803 7.97393975 8.24474212 8.202400406 8.01058176 8.241338815 8.188413607 8.029354563 254474703 fnr Stress Oxygen stress Ruegeria sp. R11 9.579182002 9.342976611 9.136244525 8.598483022 8.766833026 8.688351641 8.742131125 8.577633963 8.973128731 8.985322543 9.10839339 8.959639878 159890074 clpC Stress Protein stress Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 8.047885572 7.852385869 8.074154784 8.134420908 8.365211004 8.435645363 8.561684409 8.558920589 8.399725244 90311984 ZntA Metal Resistance Zinc Psychromonas sp. CNPT3 8.158208973 8.171740454 7.220752911 6.734879588 7.060099085 6.950865853 7.419847964 197721534 carA Organic Remediation Aromatics Heterocyclic aromatics Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 8.459989828 8.113662139 8.604970078 8.548029707 8.147584725 8.029946236 7.935126281 8.305309673 8.507110035 8.261763682 8.166484636 8.146146779 9106569 ahpF Stress Oxygen stress Xylella fastidiosa 9a5c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xylella;species:Xylella fastidiosa; 8.788933778 8.479041007 8.439587609 8.424696976 8.57179 8.241085832 8.461274698 8.782883417 8.697481796 8.594125473 8.806941806 8.904442306 46371303 sigma_38 Stress Sigma factors Azotobacter chroococcum superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter; 9.027313935 9.056699519 8.966319862 8.43763711 8.395363381 8.537776026 8.339695887 8.454081757 8.355306657 8.569950957 8.398162536 8.469618476 219669780 atzA Organic Remediation Herbicides related compound Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 8.325096351 8.444523275 8.391817951 8.11452627 7.526000594 8.121930041 8.062602526 8.049077693 8.193274313 8.317645527 3164104 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 9.059803767 8.968484332 8.959489403 8.277477469 8.209280843 8.327820667 8.283175929 8.068460577 8.226758496 8.05820094 8.368099584 113733254 vanA Carbon cycling Carbon degradation Others Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 9.754238907 9.565738065 9.754572613 8.919904744 9.053970215 8.984631259 8.79897637 8.933247362 9.103351421 9.064451792 9.044940949 9.178767583 170777752 pmdAB Organic Remediation Aromatics Others Leptothrix cholodnii SP-6 8.153335784 8.477361951 8.136215058 8.027948041 8.155648281 8.601551576 8.709440178 8.28464671 8.02342358 8.054548701 8.144332182 8.074271658 54018510 TerD Metal Resistance Tellurium Nocardia farcinica IFM 10152 8.72566254 8.336191315 8.357992641 8.4503657 8.443572209 8.315866966 8.490446457 8.237573217 8.378813225 8.396598618 8.357640647 8.243441034 13421471 pnbA Organic Remediation Aromatics Nitoaromatics Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 8.296327811 8.413505517 8.371377205 8.571634894 8.606831267 8.42367311 9.122294637 8.598295486 8.966616864 8.899355851 9.07662543 21224618 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.587177222 8.641157367 8.498149519 8.500560916 8.714618363 8.483584832 8.87322315 8.795680857 8.623807222 8.634752414 8.532503506 168197840 Arylest Organic Remediation Aromatics Other aromatics Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 8.451012454 8.587994877 8.754251126 8.75572139 8.754403566 8.372117083 8.543262585 9.036600625 8.725499686 8.755762567 8.406969386 8.287549127 194365118 glnA Stress Nitrogen limitation Stenotrophomonas maltophilia R551-3 8.658246279 8.596425714 8.526164101 8.420566249 8.262954421 8.265905708 8.170733535 8.10764911 8.342451283 8.19559091 8.341048779 8.345873578 6689151 CopA Metal Resistance Copper Streptomyces coelicolor A3(2) 8.541326706 8.868344091 8.787515465 8.653061441 8.67748245 8.80235761 8.815176806 8.902243783 8.926497982 8.909076517 8.975022131 8.814038028 148500344 vanA Carbon cycling Carbon degradation Others Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 9.059496251 9.135810705 8.959685498 8.59401931 8.539434664 8.839259617 9.252085648 8.946454284 8.919365166 8.744340978 8.947240222 8.837659685 163764431 mer Metal Resistance Mercury Bacillus selenitireducens MLS10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus selenitireducens; 8.304946053 8.413408073 7.336562004 7.563318735 7.565738839 7.79824059 8.137459893 114226556 narH Stress Oxygen limitation Alkalilimnicola ehrlichii MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 8.322653611 8.209781596 8.322370551 8.361451396 8.231187348 8.334913315 8.674400203 8.393795422 8.858429543 8.339755486 8.667340748 149141115 phdCI Organic Remediation Aromatics Polycyclic aromatics Lentisphaera araneosa HTCC2155 superkingdom:Bacteria;phylum:Lentisphaerae;order:Lentisphaerales;family:Lentisphaeraceae;genus:Lentisphaera;species:Lentisphaera araneosa; 8.225225737 8.165107863 8.280810053 8.225902453 8.424130974 8.218094366 7.954345207 8.670688272 8.082271463 8.406772946 8.369225415 8.262692592 158331243 trzN Organic Remediation Herbicides related compound Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 8.713019741 8.503668099 8.553653803 8.169977892 7.596096057 7.78153997 8.30211704 7.998850253 8.238290419 7.744471082 7.492972578 7.792455247 164498979 nhh Organic Remediation Aromatics Nitoaromatics Mesorhizobium sp. F28 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium; 8.210699748 8.037104532 7.749955529 7.455005034 7.545734833 7.377335776 7.23918457 7.966440933 7.368600228 7.261518694 7.564297882 238710166 SMR_antibiotics Antibiotic resistance transporter Yersinia rohdei ATCC 43380 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia rohdei; 8.193921789 8.509727332 7.987307088 7.702955972 7.828940788 7.058866636 7.331797588 7.365986081 7.774141331 239815062 iro virulence Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 10.16664152 10.10202347 9.827129892 9.97663007 10.27306223 10.23690798 10.64733084 10.25330705 10.1833264 9.892812853 10.13860509 9.868373149 226363860 bphF1 Organic Remediation Aromatics Polycyclic aromatics Rhodococcus opacus B4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 8.621633875 8.415886033 8.744499828 8.069881312 7.971219719 7.878251632 7.547580316 7.663997029 7.88691744 8.074564495 8.15132168 21624254 dxnA Organic Remediation Aromatics Heterocyclic aromatics Comamonas testosteroni 8.363702936 8.158020846 8.216163722 8.653615291 8.467536482 8.411384279 8.245064633 8.773890044 8.325895467 8.396125365 8.354511293 8.067915548 127663799 RNA_dependent__RNA_polymerase Bacteria phage REPLICATION Enterobacteria phage MS2 family:Leviviridae;genus:Levivirus; 9.641537824 9.766253511 9.739432111 8.710454987 9.423515544 9.438122378 9.99867681 8.737039934 9.287027095 9.100847155 9.045384569 9.176700272 240143434 dsrA Sulphur sulfite reductase Roseburia intestinalis L1-82 7.529502479 7.437822103 7.219086808 7.147614595 7.512023593 7.876777491 7.533177722 7.526129997 7.749072784 69289587 adpB Organic Remediation Pesticides related compound Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 9.600864522 9.568887072 9.621056347 10.16466483 10.13091302 9.689575017 9.635473018 10.26617183 9.851162185 10.05948591 9.599071832 9.863194725 9957145 phenol_oxidase Carbon cycling Carbon degradation Lignin Polyporus ciliatus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Polyporus; 7.971513124 7.503446113 7.22989475 7.47038311 7.491002526 7.382666585 7.546572977 7.044158438 188583335 CopA Metal Resistance Copper Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 8.429792327 8.273927482 8.404361802 7.907523292 7.838728524 8.029839086 8.215879922 122089662 cydA Stress Oxygen limitation Yersinia enterocolitica subsp. enterocolitica 8081 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 9.526395899 9.436375383 9.577855406 9.277865388 9.087288717 8.913924556 9.155212561 9.303598793 9.09080045 9.225409527 9.152610611 9.217220452 21225304 amyA Carbon cycling Carbon degradation Starch Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.556779184 8.490327431 8.260692916 8.231750721 8.023716275 7.588884933 7.736112298 7.987179685 8.345570536 7.979173244 7.596256163 7.680228424 72395481 linC Organic Remediation Pesticides related compound Methanosarcina barkeri str. fusaro superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina barkeri; 8.336843209 8.483942551 8.400331677 7.809030332 7.85390251 8.049959229 8.045133815 7.241160591 7.933893218 7.868850411 8.123292854 283103468 srt virulence surface protein Bifidobacterium dentium Bd1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium dentium; 8.754098433 8.909360108 8.715318624 8.881645739 8.894699848 8.59694414 8.55498339 9.150476405 8.654621198 8.630022957 8.741046166 8.863664838 83593735 rubisco Carbon cycling Carbon fixation Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 8.319829844 8.497078611 7.838372114 7.586153927 8.000323692 8.14179862 7.742069846 8.286883351 7.856676772 7.634591275 7.630804272 197759676 exochitinase Carbon cycling Carbon degradation Chitin Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 9.822089547 9.729556236 9.845799791 9.385442039 9.212102908 9.002620108 9.124591207 9.092294659 9.05715253 9.225937513 9.118973633 9.382942344 157011606 APS_AprA Sulphur adenylylsulfate reductase uncultured bacterium superkingdom:Bacteria; 8.352418166 8.682313639 8.306180046 7.824990168 7.414939692 7.797288346 7.76712947 7.3221527 8.095432497 7.543741836 7.487715879 7.658773107 166859541 iro virulence Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.450252919 8.218226687 8.217254097 8.251986366 8.21028615 8.429313263 8.496916436 8.250192333 8.529900502 8.540903243 8.247891503 36786656 sigma_24 Stress Sigma factors Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 7.414238887 7.592964391 7.660008721 7.158961487 7.141809184 221065593 ChrA Metal Resistance Chromium Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.56221335 8.532698575 8.571407769 8.412634291 8.351091022 8.062821423 7.929420826 8.295378081 8.318049287 8.099705352 7.87861597 8.295518687 91801066 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 8.361279011 8.148746625 8.031562934 7.991483046 7.953721624 8.001212852 8.048807352 8.214480126 7.875453222 8.044836017 8.046942099 10639938 ferrochelatase Bioleaching Iron oxidation Thermoplasma acidophilum;Thermoplasma acidophilum DSM 1728 9.482477002 9.347911313 9.279384018 9.243131011 9.312028739 9.330217648 9.196636101 9.58728127 9.233155559 9.450894776 9.410771469 9.682132272 110611607 mauAB Organic Remediation Herbicides related compound Alcaligenes faecalis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes; 8.352222672 8.282678882 8.218201526 7.769709541 7.680760593 7.760846361 7.511261126 7.295508897 7.753155534 7.455873348 7.417092937 7.908779749 72120976 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.351412228 8.211480012 8.398986326 8.05725357 8.240259519 8.115612101 8.02675442 7.878694818 8.221898715 8.100956224 8.154691442 8.018313816 259021546 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 9.350177944 9.560351926 8.943024643 9.264620591 9.127530591 213966264 sigma_24 Stress Sigma factors Corynebacterium amycolatum SK46 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium amycolatum; 8.307607638 8.616417229 8.345171411 7.713155655 7.675745484 7.935431378 7.536296059 7.466830627 8.067633341 7.407678726 7.520201217 7.719339627 89088780 proV Stress Osmotic stress Bacillus sp. NRRL B-14911 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 8.825210884 8.469597586 8.673066776 7.792783907 8.206464622 7.81477612 7.182762298 7.488635823 7.866017735 7.737563213 7.816957767 8.062168362 197087442 sigma_24 Stress Sigma factors Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 8.338694847 8.252566662 8.326489848 7.708317783 7.484332299 7.83981284 7.951329812 7.470263587 7.551673694 7.786739076 7.780918939 252124055 clpC Stress Protein stress Corynebacterium matruchotii ATCC 14266 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium matruchotii; 8.351430837 8.201514756 8.415733835 8.063240976 8.08980135 8.312494038 8.364065435 8.000477437 8.44855287 7.848162389 7.729358583 7.815539083 183580972 iro virulence Kocuria rhizophila DC2201 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 9.043149662 8.723553809 8.897039735 8.741292642 8.798709887 8.734104817 9.080529801 8.768534269 9.364951843 8.686166814 8.62110109 8.610573078 188583297 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 8.415254283 8.567671619 8.42577226 8.354587718 8.22019802 8.122521657 8.118776758 8.411155529 8.439891642 8.213897427 8.45371492 26986133 xylanase Carbon cycling Carbon degradation Hemicellulose Penicillium funiculosum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 7.48707819 7.337835532 7.379282867 7.146775839 7.125841368 8.016115637 7.445329165 7.606852753 7.840162224 163739562 4HBH Organic Remediation Aromatics BTEX and related aromatics Phaeobacter gallaeciensis BS107 9.145182649 9.046858001 9.114824285 9.287920705 9.053649289 8.792950584 9.038418568 9.110441303 9.350245448 9.241697454 9.074178074 9.268062416 262080615 fnr Stress Oxygen stress Haliangium ochraceum DSM 14365 9.433032892 9.301311609 9.105234808 9.071742504 8.965287691 8.816280395 8.864519339 9.151431898 9.151419089 9.232078047 9.143372463 9.234926073 239942472 AceA Carbon cycling Carbon degradation others Streptomyces roseosporus NRRL 15998 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces filamentosus; 9.801649191 9.400822912 9.134532919 9.609876231 9.568611791 9.487912083 9.11432952 9.656117622 9.046346675 9.586967021 9.496609584 9.839163577 160917767 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.507739451 8.036000977 8.393381356 8.313550838 8.31436908 8.258303867 8.42592349 8.471572437 8.342400047 8.460209421 8.370566209 8.167661608 73748113 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. CBDB1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 6.778624389 7.206186363 6.879281691 6.964904751 7.372917599 6.887153176 7.395686601 218273113 TerD Metal Resistance Tellurium Roseburia intestinalis L1-82 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia intestinalis; 8.610864672 8.429520404 9.018487171 8.170796049 7.854827459 7.728821595 7.811514939 7.376076263 8.044871307 7.574328067 7.63259369 7.895275609 170747380 cap virulence capsule Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 9.640364942 9.666501853 9.55119798 9.267448924 9.343555843 9.727644698 9.956638776 9.601752437 9.675030106 9.881307975 9.601990416 9.780814308 169637679 atzA Organic Remediation Herbicides related compound Candidatus Desulforudis audaxviator MP104C superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Candidatus Desulforudis;species:Candidatus Desulforudis audaxviator; 8.749158244 8.506601862 8.281645623 8.320683117 8.319707945 8.296669324 8.081546047 8.299218094 8.447752956 8.701349372 8.563679528 8.397045961 118681426 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 9.55402506 9.652664279 9.750031401 8.792196138 8.841705573 8.781949819 8.943641234 8.747313253 9.328807525 8.899363607 8.912995795 9.018550708 126649786 TehB Metal Resistance Tellurium Bacillus sp. B14905 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.061999224 6.99767025 116627463 hly virulence hemolysin Streptococcus thermophilus LMD-9 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus thermophilus; 8.389146933 8.130264494 8.578283907 7.644088723 7.542382425 7.659220866 7.423304522 7.397266554 7.617282716 7.560960848 7.542376122 7.786639152 184194703 amyA Carbon cycling Carbon degradation Starch Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.956036888 8.229044364 7.685303621 7.572455853 7.287849349 7.339153751 7.451411612 8.189199012 7.287863569 7.694619776 219998110 ctsR Stress Protein stress Clostridium cellulolyticum H10 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium cellulolyticum; 7.718802555 7.454102688 7.447173785 7.329581157 7.355742527 7.660326342 85773383 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 8.859825612 9.215952349 9.002143927 8.228960476 9.106457813 9.317156615 8.836510908 9.198250608 8.938201457 8.604648264 8.960125309 257484966 glnA Stress Nitrogen limitation Pseudomonas syringae pv. tabaci ATCC 11528 9.295679323 9.36978067 9.528625469 8.164897562 8.507193307 8.842137056 9.081398292 8.579326193 9.04042659 8.546467324 8.520179724 8.722413699 25029022 pstC Stress Phosphate limitation Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 8.43191839 8.3584877 8.561015969 7.632258014 7.713269254 7.9790006 8.292934339 7.783766485 8.770914653 7.633737815 7.518372206 7.980297881 134100738 P450 Energy process Energy process Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 8.902943636 8.578590455 8.68301932 8.361911337 8.350044377 8.309731691 8.021775094 8.193471782 8.427976821 8.499052669 8.368773781 8.664788624 91719648 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 8.938840206 8.913259894 8.529070423 8.67018432 8.445264794 8.722951998 8.95949166 8.729683655 8.57121274 8.378316142 8.418296917 8.272945796 87283807 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 9.864023331 10.21668161 9.950450369 9.217850991 9.282707505 9.729820998 9.757141623 9.547797488 9.600560214 9.684329928 9.683556447 9.918707995 210632294 cellobiase Carbon cycling Carbon degradation Cellulose Collinsella stercoris DSM 13279 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella stercoris; 8.452538137 7.880465675 8.252997733 8.082596326 7.862245284 7.607025245 7.560023595 7.584243042 8.130967511 7.448941811 7.687397363 7.656308233 22252768 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.276602226 9.097317182 8.854860842 8.784420012 9.267606965 9.310378842 9.089683398 9.881877536 8.909263793 9.376817564 9.400349625 9.608377919 39998044 ArsC Metal Resistance Arsenic Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 8.548893488 8.54554188 8.565364898 8.187764929 8.018015996 8.163236065 7.497090497 7.724453444 8.020265354 8.109812549 8.188817204 262085345 obgE Stress Radiation stress Gordonia bronchialis DSM 43247 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 9.115322197 9.127073726 9.017307167 9.348672461 8.89245649 8.566899368 9.421205263 9.074976725 220919487 glnA Stress Nitrogen limitation Anaeromyxobacter dehalogenans 2CP-1 8.354308168 8.20313253 8.264738795 7.877068984 8.328082144 8.155232534 7.956685165 8.297131501 7.805978083 209530461 ZitB Metal Resistance Zinc Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 8.293092782 8.375919535 8.376113942 8.38126907 7.876529552 8.181822499 8.608835543 8.360233586 8.605092874 8.669080642 8.679907814 156857765 APS_AprA Sulphur adenylylsulfate reductase uncultured bacterium 9.381062945 9.258874908 9.216153551 8.777135093 8.395958963 8.163882768 8.631237237 9.200749468 56963307 obgE Stress Radiation stress Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 8.123598933 8.218590805 8.119107425 7.917052977 7.532155451 7.491182147 7.866907388 8.08521268 7.846276488 7.565903756 7.82601644 224372362 pstB Stress Phosphate limitation Nautilia profundicola AmH 8.375562528 8.296953306 8.468158538 8.188033912 8.166949392 8.08328882 7.895862995 8.075725802 8.145911769 7.939832176 7.683440381 8.183313022 91802339 rubisco Carbon cycling Carbon fixation Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 9.584518563 9.707577761 9.885146274 9.833292171 9.902384481 9.549425425 9.793514464 10.12061926 9.927352018 10.12498516 9.996288905 10.15350816 78093594 narG Nitrogen Denitrification uncultured bacterium 8.533205036 8.727060091 8.304467096 8.450134734 7.995120935 8.208321723 8.191980081 8.203846568 8.313889815 8.375275204 8.262554803 8.237923548 161075845 norB Nitrogen Denitrification Verrucomicrobiae bacterium V4 superkingdom:Bacteria;phylum:Verrucomicrobia;order:Methylacidiphilales;family:Methylacidiphilaceae;genus:Methylacidiphilum;species:Methylacidiphilum infernorum; 8.279306111 8.237804793 8.456954083 7.64969286 7.795317516 7.458449269 7.201591408 7.438265194 7.792587982 7.66438171 7.515067896 7.827399234 260853048 sigma_24 Stress Sigma factors Prevotella tannerae ATCC 51259 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella tannerae; 8.167100585 7.918114859 8.157870467 7.359275616 7.363950393 7.559610798 7.563385838 7.327350093 8.074730728 7.380656466 7.176710769 7.542660853 240011733 P450 Energy process Energy process Methylobacterium extorquens AM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 8.589706513 8.176562139 8.532569637 8.077525912 7.665259995 7.755723651 7.625998457 7.655213503 7.765246859 7.780390634 7.934399158 7.750097021 256585991 katE Stress Oxygen stress Saccharomonospora viridis DSM 43017 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora viridis; 8.587525615 9.179247175 8.69214691 8.524746855 8.591131197 8.798698215 8.714734428 8.981762515 8.861677751 9.38605702 9.397654683 9.255404228 85670888 ureC Nitrogen Ammonification Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.335527973 8.425473932 8.22387736 8.178185483 7.760465912 8.012510644 8.376123403 8.474006558 8.435047804 8.221864116 8.338398935 218297234 oxyR Stress Oxygen stress Thermus aquaticus Y51MC23 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus aquaticus; 9.04404052 8.846324866 9.02688681 8.496827284 8.598654195 8.708884719 8.810552698 8.623490515 8.886888631 8.475659006 8.720945867 8.346141796 158107992 MFS_antibiotic Antibiotic resistance transporter Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.730981305 8.671914625 8.86471723 8.841623615 8.827765926 8.450565504 9.06039272 9.375125904 9.012300397 9.240803351 9.104381142 9.107942558 23016096 obgE Stress Radiation stress Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 8.532412184 8.490382942 8.455209004 7.992580992 8.388780956 8.690164859 7.826847506 7.980531529 8.153794485 8.105214132 8.137595789 8.107042114 239910484 ABC_antibiotic_transporter Antibiotic resistance transporter Thermococcus gammatolerans EJ3 8.324005055 8.069085359 7.586142963 7.563434599 7.324693233 7.385433965 7.325946397 7.952611855 7.251520453 7.518218127 7.258549094 29605347 pcaG Organic Remediation Aromatics Other aromatics Streptomyces avermitilis MA-4680 8.118424342 8.71490304 8.285667543 7.609755613 7.967190606 8.202397416 8.238827342 7.953942271 8.533205402 8.612785153 7.95126414 83972354 nosZ Nitrogen Denitrification uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 8.471440664 8.136658174 7.675256877 7.848907077 8.216351082 8.162913273 8.188052229 8.049155711 7.577874413 113529240 Catechol Organic Remediation Aromatics Other aromatics Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 10.43488861 10.3154207 10.08067784 9.958079406 9.792083067 10.01174738 10.34685078 9.861798568 10.62044196 9.63323554 9.61379142 9.806537966 241777951 fnr Stress Oxygen stress Allochromatium vinosum DSM 180 8.507691616 8.598003687 8.386495238 8.208702962 8.838913228 8.819121469 8.685535844 8.672997812 8.672675521 8.472816459 8.552192453 90422541 bco Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.195981379 8.420243071 7.77534201 7.622760249 7.95480142 7.895415754 7.700685757 8.399654376 7.867554272 7.698034958 7.87165889 83726398 nahF Organic Remediation Aromatics Polycyclic aromatics Ralstonia solanacearum UW551 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 8.617914261 8.841778556 8.960088194 8.740942938 8.512407995 8.21484348 8.924150779 8.766511667 8.661298603 8.604499409 8.322512496 220713539 TehB Metal Resistance Tellurium Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 10.95871177 10.32488039 10.23899775 11.2338871 10.96073935 11.22208105 10.77470569 10.83573686 10.74981939 11.14127829 11.12947176 10.41286509 163751338 pimF Organic Remediation Aromatics Aromatic carboxylic acid Shewanella benthica KT99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella benthica; 8.03580361 7.905725078 7.660874026 7.787942523 7.957954997 7.76952698 7.91912587 8.001330186 7.463541133 221738326 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 8.655259134 8.621799156 8.923224092 8.550179036 8.558856286 8.136007439 8.219284601 8.628877658 8.359803417 8.603008725 8.6009407 8.736831286 239933495 ureC Nitrogen Ammonification Streptomyces ghanaensis ATCC 14672 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 9.63791722 9.591358584 9.687209638 9.057552715 9.093191206 9.382621976 9.360339224 9.288501601 9.18240366 9.31985683 9.60413119 9.547993183 171098043 type_III_secretion virulence secretion Burkholderia ambifaria MEX-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 8.74141487 8.586438853 8.761585094 8.470021092 8.222853289 8.062801433 8.007345446 8.071204141 8.689336158 8.128041519 8.029004773 8.19836744 148498932 nagI Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.727967397 8.913950794 9.305531614 8.572041522 8.466559266 8.558430591 8.459263339 8.293954941 8.697443275 8.643129968 8.693298995 8.537410995 84779127 SMR_antibiotics Antibiotic resistance transporter Sodalis glossinidius str. 'morsitans' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Sodalis;species:Sodalis glossinidius; 8.428749163 8.269012075 8.107951113 8.506444886 8.189477844 7.711917468 8.4866119 8.012551634 8.331787648 8.058686788 8.312412876 213956686 ara Carbon cycling Carbon degradation Hemicellulose Propionibacterium acnes SK137 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 8.705984397 8.59023958 8.931102427 8.158893908 8.167700708 8.164537032 8.054458039 7.749892746 8.294713399 7.856672192 7.928310607 8.270181948 90105197 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.04618811 7.747027225 8.00046294 7.369595473 7.815401357 7.771681261 7.891155539 7.71629351 7.371629577 212687285 atzC Organic Remediation Herbicides related compound Providencia alcalifaciens DSM 30120 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 8.035174004 8.017846617 6.996670199 7.335119159 60476312 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 8.392591524 8.960614011 9.078423068 8.073562943 8.426311388 8.573050815 9.120849525 8.792669936 8.798023219 8.277058476 46850304 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.966378562 8.879757701 8.946680652 8.851525363 8.509206799 8.43709056 8.569956225 8.881818008 8.705635708 8.773312683 8.627297456 8.60326241 160362131 pcc Carbon cycling Carbon fixation Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.569500698 8.066682322 8.437570736 8.311464103 8.198418014 8.176848482 8.282100366 8.391016004 8.104923657 8.267873056 8.098877152 8.119575037 3157534 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 9.249150049 9.111647885 9.318806682 8.699741171 8.603594934 8.624237418 8.645386741 8.570667615 8.58200645 8.698758475 8.681125172 8.8885665 68203061 CopA Metal Resistance Copper Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.923895909 8.923267494 8.81158045 8.460128232 8.480688887 8.445468704 8.319434618 8.851071505 8.200454974 8.704551264 8.852615763 8.36631767 256585355 cap virulence capsule Saccharomonospora viridis DSM 43017 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora viridis; 9.623639179 9.563894184 9.685579957 9.040254814 9.04214641 8.720918064 8.835170908 8.814591249 8.883809833 9.059512585 9.062595917 9.068813737 188994277 gyrB other category gyrB Porphyromonas gingivalis ATCC 33277 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas;species:Porphyromonas gingivalis; 8.880319157 8.346073616 8.895029058 7.876429245 7.790608252 7.655969368 7.84377946 7.574621235 7.957441273 7.741851298 7.710733733 8.004928046 223893343 mannanase Carbon cycling Carbon degradation Hemicellulose bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 8.529480118 8.703236069 8.694388194 7.744032933 8.264625662 8.427293826 8.77934093 8.221548823 8.714088955 8.318485352 8.275414453 8.509769337 115254579 phn Organic Remediation Herbicides related compound Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 9.647073098 9.258965027 9.438480508 9.030071559 9.277052825 9.363440139 9.259968493 9.476924669 8.985098173 9.315170833 9.530518604 9.385405174 73538609 proO Organic Remediation Aromatics Other aromatics Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.520875892 8.511132564 8.13235575 8.237416382 8.156754923 8.241336588 8.147416682 8.545021036 8.162925338 8.55980003 8.315241025 8.531809239 60416980 ara_fungi Carbon cycling Carbon degradation Hemicellulose Fusarium oxysporum f. sp. dianthi superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;genus:Fusarium;species:Fusarium oxysporum; 8.611576164 8.578088321 8.74246696 8.404394877 8.035553948 7.999369402 8.136587613 8.16608048 8.042938381 8.02930567 8.190902674 29466064 norB Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.913193057 8.947417622 8.643647979 8.939671845 9.020029083 8.537429432 9.092304591 9.151255596 9.085903676 8.628180095 8.647329577 211587537 nahF Organic Remediation Aromatics Polycyclic aromatics Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 7.730908085 7.605299984 8.07883312 56686633 pstB Stress Phosphate limitation Synechococcus elongatus PCC 6301 8.03263925 8.100182448 8.133008056 8.079834568 7.976023674 7.77373055 8.35866379 8.336902321 8.217691755 8.169573587 8.413857346 197210159 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 9.195318374 8.2178455 8.712369718 8.224658903 8.147988133 8.607429891 8.229987256 8.63773828 8.359988803 8.384712379 33320489 dsrB Sulphur sulfite reductase Desulfospira joergensenii superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfospira; 9.494526167 9.610838238 9.458574709 8.556024193 8.901443982 9.212640712 9.677344628 9.419644897 9.58984251 8.90652333 9.104485046 9.15448772 115389770 nitA Organic Remediation Aromatics Other aromatics Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 8.702487446 8.548406314 8.373203425 8.422343587 8.532281214 8.354556236 8.425073885 8.165366341 8.343753976 8.471866888 8.220158342 270737028 sigma_24 Stress Sigma factors Desulfovibrio aespoeensis Aspo-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio aespoeensis; 9.060767029 9.05725087 9.395658515 8.861479125 8.792446626 8.708441078 8.891660713 8.725434304 8.799114713 8.684194709 8.835599044 8.897895743 227329764 AceA Carbon cycling Carbon degradation others Pectobacterium carotovorum subsp. carotovorum WPP14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 9.694349809 9.647672237 9.74734689 9.616005233 9.464856415 9.434776306 9.08970989 9.495371585 9.276605081 9.625128567 9.757130686 9.015271363 1622792 gyrB other category gyrB Thermotoga maritima superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga; 8.51548068 8.56483458 8.612940206 8.096135083 8.140521562 7.923130669 7.775089546 8.229787253 8.437522324 8.473254156 8.497350652 8.6098995 110668546 dnaK Stress Heat shock Haloquadratum walsbyi DSM 16790 7.67158355 7.35724699 7.390050127 7.333828192 7.526473132 7.383066697 7.291887784 93358719 ZntA Metal Resistance Zinc Ralstonia metallidurans CH34 8.566273474 8.487982201 8.504243553 8.050760665 8.108852342 8.275559035 8.390146564 7.98708785 8.497588038 8.073603431 7.869465155 8.157797476 119962051 Catechol Organic Remediation Aromatics Other aromatics Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 8.071309975 8.010905309 8.394995306 7.159638575 6.764070313 7.162557633 7.307883506 7.353864681 156933871 MFS_antibiotic Antibiotic resistance transporter Enterobacter sakazakii ATCC BAA-894 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 9.981495052 9.832972433 9.943414637 8.569209131 9.09711311 9.296900626 9.918574972 9.490730715 90104153 ArsC Metal Resistance Arsenic Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.150628558 8.735291722 8.745235614 9.030739813 9.040672892 8.946250918 9.328014853 9.153019786 8.809673802 8.935893332 8.78465876 8.79284901 260455819 amyA Carbon cycling Carbon degradation Starch Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 9.42148755 9.455967769 9.22865224 9.108519296 9.024786759 9.07249267 8.742755457 8.990365744 9.044754387 9.258242355 9.187959281 9.190493262 229323536 phoA Stress Phosphate limitation Rhodococcus erythropolis SK121 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 8.788879629 8.912350093 8.624025359 8.136643554 8.476971221 8.850570124 9.182239674 8.13736347 9.130013501 8.271651202 8.336374945 8.333163559 227530651 ahpF Stress Oxygen stress Lactobacillus vaginalis ATCC 49540 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus vaginalis; 8.044096708 8.399255549 7.318531867 7.025672576 7.22895286 7.57709458 7.251630299 7.283288224 7.045905679 254454757 pcc Carbon cycling Carbon fixation Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 8.295825512 7.928466922 7.743164491 7.648378224 7.786191815 8.353644146 7.474655552 7.8916774 7.281801238 7.497572764 7.520964893 206594311 ppk Phosphorus Phosphorus utilization Ralstonia solanacearum IPO1609 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 10.0421671 9.558928698 9.659808547 9.929476962 9.742259129 9.800791432 9.562631428 9.751955227 9.633142241 9.823172147 10.08490072 9.841002136 118171854 gyrB other category gyrB Mycobacterium smegmatis str. MC2 155 8.526648929 8.579098647 8.393288005 8.663575453 8.868670981 8.304798461 8.398757687 8.811751549 8.918341856 8.966097495 8.333920725 119671615 silC Metal Resistance Silver Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8.825390726 8.53084077 8.905355685 8.601380464 8.258321192 8.305797674 8.381090274 8.314270291 8.425740991 8.360234473 8.404113974 118736482 pcc Carbon cycling Carbon fixation Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 8.840538911 8.651784965 8.790902946 8.112683263 7.945658503 8.29701845 7.923319597 7.753157978 8.386874784 7.973262908 7.805171966 8.11597898 239579681 nrfA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 8.263690072 8.176049123 8.276904885 8.12545999 8.186676452 8.157219371 7.780688277 8.196956336 8.099041095 8.175730094 8.292470225 8.023045469 119715741 atzD Organic Remediation Herbicides related compound Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.551933252 8.600275825 8.576256358 8.965459547 9.026401553 8.714187475 8.447632401 9.00916237 8.246075624 8.670650037 8.635782674 8.718612984 91692354 sigma_70 Stress Sigma factors Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.788575719 8.731375294 8.681277592 8.470977743 8.200856022 8.45167818 8.650710925 8.29651554 8.426510156 8.303833403 8.372623594 209517820 xylA Carbon cycling Carbon degradation Hemicellulose Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.415892314 8.364129693 8.579997517 8.06797261 8.179299744 8.094558525 8.552840184 7.958990411 8.649949132 8.160255508 8.036784443 8.168338946 271968379 Tet Antibiotic resistance other Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 9.112949043 8.828949716 9.071566006 8.847471366 8.469578172 8.154092892 8.502287693 8.710927049 8.25505587 8.123918738 8.225148577 170605698 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.105580839 9.099357668 9.076175614 8.097840189 8.435515933 8.665404267 9.180156976 7.987716865 8.767323911 8.421502094 8.069894078 8.393883247 6460232 ChrA Metal Resistance Chromium Deinococcus radiodurans R1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 8.470493586 9.108133312 8.551161101 9.693621189 9.543227193 9.161417886 9.627746626 9.556141666 9.117596127 9.582886572 9.194830883 149914873 bclA Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 9.742821388 9.804734627 10.00459172 10.29209311 10.22543683 9.915479321 10.18739579 10.31611621 10.12049163 10.14033515 10.15805149 9.772664807 72117894 pilin virulence pilin Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.597103117 8.49147195 8.660301077 8.522448355 8.293256073 8.042981707 8.120560097 8.022754062 8.645738 8.090693331 8.199362441 8.499264568 28211540 phoB Stress Phosphate limitation Clostridium tetani E88 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium tetani; 8.121232026 8.119843701 8.392269679 7.258519318 7.253216471 7.130923178 6.774576235 6.705655906 7.455193752 7.148499247 7.0955528 7.519402286 251808181 sigma_24 Stress Sigma factors Gallionella ferruginea ES-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Gallionella;species:Gallionella capsiferriformans; 9.552452512 9.45340083 9.169203004 121996903 pstB Stress Phosphate limitation Halorhodospira halophila SL1 9.14716526 9.231674435 9.199334972 8.810001814 8.969045263 8.805199338 8.634147069 8.649771132 8.755193394 8.902987414 8.956428645 8.746964893 229747112 cap virulence capsule Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 9.747051886 9.760224856 9.586140985 8.845417675 9.029384451 9.360104474 9.42509304 9.065017733 9.351310106 9.313945942 9.331003099 9.487647777 261209939 pilin virulence pilin Vibrio sp. RC341 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.710068347 8.712026837 8.868405164 7.701386856 8.138853552 8.115320655 8.781251941 8.286892016 8.890393138 7.846467566 8.033754175 8.305687193 229311141 sigma_70 Stress Sigma factors Listeria grayi DSM 20601 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria grayi; 7.511902851 7.46183294 7.105479789 7.260957867 7.350782115 7.06794424 6.998305014 147886164 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 9.189434101 9.298565674 8.988540652 9.683619531 9.375606123 9.678673712 8.959542427 8.820802435 8.967004412 148272061 xylA Carbon cycling Carbon degradation Hemicellulose Clavibacter michiganensis subsp. michiganensis NCPPB 382 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 8.34007193 8.651395122 8.383460043 8.708189084 8.550162892 9.095296917 8.500951391 8.499019038 8.417134513 8.702530169 8.539514266 14585932 Catechol Organic Remediation Aromatics Other aromatics marine bacterium SE165 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales; 9.195542762 9.145849445 9.223776503 8.938036417 8.928865735 9.114657897 8.508264565 8.619805727 8.435226156 8.89833707 8.966175617 8.946419826 187725987 ppx Phosphorus Phosphorus utilization Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.421503322 8.437630242 8.380554846 8.921914105 8.239698691 7.925717665 8.300002916 8.32395231 8.505469843 8.362779012 8.266487471 8.264665054 67088755 pheA Organic Remediation Aromatics Other aromatics Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 8.387319024 8.402063156 7.974400572 8.058672931 7.697711045 8.026353207 8.145467314 8.194782761 8.180886668 7.923253348 8.288118473 169629811 inv virulence invasion Mycobacterium abscessus ATCC 19977 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium abscessus; 8.873718795 8.209340467 8.33040534 8.135254133 8.508900221 8.244477729 8.089006913 7.854775956 8.190453739 8.209748313 7.953298456 8.004028948 27382914 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 9.060707409 9.13299689 9.147292547 8.466378172 8.710477567 8.406294365 7.979374977 7.714424367 8.156164541 8.285898746 8.573783171 117578444 Arylest Organic Remediation Aromatics Other aromatics Gramella forsetii KT0803 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Gramella;species:Gramella forsetii; 8.561027636 8.474594875 8.642440512 8.370900495 8.278450881 8.154536506 7.755224306 7.896454912 8.41244929 126630999 fnr Stress Oxygen stress Marinobacter sp. ELB17 8.980839825 9.052396377 9.190286213 8.480512117 8.435302881 8.201087733 8.875049572 8.652704289 8.859352064 8.531830267 8.830975714 8.656584978 31747783 nif_II Bioleaching Nitrogen Leptospirillum ferrooxidans 8.411400002 8.545784861 8.49688753 8.333729101 8.324954361 8.238145703 8.325138946 8.269355518 8.373716863 8.106442461 8.216580456 156231487 CadA Metal Resistance Cadmium Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 9.007821222 9.101053026 9.116615229 9.451776961 9.288286175 8.89784488 9.323052118 9.497448224 9.257036734 9.316461366 9.311156879 9.303322449 182377284 ppk Phosphorus Phosphorus utilization Clostridium butyricum 5521 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium butyricum; 8.426169646 8.2975447 89345230 fnr Stress Oxygen stress Rhodoferax ferrireducens T118 8.144033737 7.978666727 7.517633406 7.630789443 7.60382752 7.018924797 7.273024757 7.586161608 7.561726241 7.428196415 7.461003135 197087594 pstC Stress Phosphate limitation Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 7.5879537 7.742626355 8.020114508 8.024462985 7.286058619 7.627738951 7.482111939 83594042 gyrB other category gyrB Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 9.398907388 9.195921966 9.445144704 109643167 Ni_Fe_hydrogenase Energy process Energy process Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 9.197252137 9.085135321 9.235139281 8.56986474 8.409193197 8.322904346 8.293362547 8.073746645 8.486294562 8.376425203 8.142142485 8.481414334 119715161 pstA Stress Phosphate limitation Nocardioides sp. JS614 9.571643388 9.241805212 9.328989178 8.889444187 8.712069341 8.709200106 9.096737629 8.598768889 9.048523044 8.675925684 8.555741758 8.852583741 145213675 nagI Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 9.447166704 9.347010016 9.617071154 8.813384249 8.374281061 8.803687933 8.736307409 8.427496691 8.620363888 8.571403348 8.536914072 8.927891677 92442487 TerC Metal Resistance Tellurium Mycobacterium sp. KMS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.778907831 8.400462283 8.635304241 8.170175834 7.89960125 8.110793009 7.779087522 8.252103552 8.215441978 8.055132543 8.064100027 150392296 ahpC Stress Oxygen stress Alkaliphilus metalliredigens QYMF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus metalliredigens; 8.221783708 8.318048999 7.342210457 7.293076915 7.389527334 7.157366165 7.431585208 39996740 cydA Stress Oxygen limitation Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 8.621985892 8.320765077 8.898274657 8.630910835 8.352340614 8.339756195 8.360275351 8.592572322 8.395879251 8.387731047 8.192178507 99030551 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 9.621396179 9.481159079 8.924454539 9.572312393 9.086017748 9.620657036 9.757608281 9.612060596 9.307874595 9.107410948 9.19953321 9.122852028 254514331 ureC Nitrogen Ammonification gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.325615988 7.380316189 7.188896363 7.203859027 7.627297015 7.148312209 7.410297947 227295544 nplT Carbon cycling Carbon degradation Starch Geobacillus kaustophilus HTA426 7.970871858 7.97875932 7.187080143 7.227817171 7.827364708 7.680502058 7.284723028 7.615715849 7.472392286 7.249554772 7.615012453 219847326 aoxB Metal Resistance Arsenic Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 9.023695013 8.671329853 8.641945471 8.754258305 8.763767042 8.591180315 8.85236164 8.675579826 8.870822668 8.960298477 9.022722706 8.52063885 210159903 ppx Phosphorus Phosphorus utilization Collinsella stercoris DSM 13279 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella stercoris; 9.372747949 9.546350508 8.236513559 8.195835852 8.365528398 8.410123703 7.960488034 8.527666868 8.255701885 8.288329998 8.439625163 237879427 B_lactamase_A Antibiotic resistance Beta-lactamases Burkholderia glumae BGR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia glumae; 7.828740878 7.791150554 7.463830391 7.748612272 7.933706573 7.887684209 7.765095033 7.501678942 7.826352562 227491099 glnA Stress Nitrogen limitation Corynebacterium pseudogenitalium ATCC 33035 8.97979637 8.430397727 8.982513709 8.359664509 8.402115548 8.67994215 9.046712907 8.050602343 9.193531736 8.510841223 8.682988743 8.696910944 153795355 obgE Stress Radiation stress Ruminococcus gnavus ATCC 29149 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus gnavus; 7.572615685 7.363584021 7.444824221 6.978226701 7.635016749 7.286005387 7.002597654 7.009851851 46520025 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9.947000786 8.799007338 8.124616656 9.795345059 9.840677539 9.580079129 9.696923273 9.709994681 9.529747342 9.433842759 9.355207413 9.08664234 15805575 pilin virulence pilin Deinococcus radiodurans R1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 8.410214458 8.381281294 8.649258805 7.999233355 8.006602955 7.796138764 7.812432629 8.059983068 7.87795981 7.90909568 7.901253741 8.078685026 242258997 sigma_70 Stress Sigma factors Clostridium cellulovorans 743B superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium cellulovorans; 8.084528206 8.063530188 6.999939866 7.208445792 7.30428027 7.086018627 7.460680252 182634133 hrcA Stress Heat shock Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 8.419483875 8.089997024 7.908398587 8.552683313 8.150353224 8.072480758 7.999800442 8.368843475 110819505 xylC Organic Remediation Aromatics BTEX and related aromatics Rhodococcus sp. RHA1 8.155401299 8.336482769 8.33908317 7.96927542 7.963030663 8.024490944 8.161639723 7.968758412 8.123820608 8.106154498 7.807584153 7.975772137 254447366 obgE Stress Radiation stress gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.236922052 7.674596801 7.666934252 8.297393917 7.928734363 8.144175212 7.672990713 7.807477822 7.805977157 157679439 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.257024498 8.148619643 8.523044276 8.330346672 8.306978044 8.154683907 8.734613753 8.523149383 8.792461878 8.54026413 8.763764139 261820642 pstB Stress Phosphate limitation Pectobacterium wasabiae WPP163 8.588839653 8.598483451 8.371272189 8.404505032 8.403572814 8.142749657 8.339447798 8.566243852 8.476270126 8.610390692 8.665128964 8.41127865 111019301 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.746876642 8.661628545 8.579354287 8.376960566 8.308139523 8.16447864 8.193933396 8.12831776 8.345641751 8.138072779 8.100579787 8.210723429 118073386 CopA Metal Resistance Copper Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 8.559265311 8.410503095 8.640721384 7.875145855 7.75906626 7.720685751 7.333812907 7.559803566 7.835211839 8.035042818 7.672371072 7.910384921 171853191 ppx Phosphorus Phosphorus utilization Sinorhizobium meliloti superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium; 8.289579643 8.264916239 8.472752851 8.147942771 7.872046598 7.79464619 7.948235116 7.769879905 8.691892348 7.775107051 7.765572906 7.753253135 139438942 CopA Metal Resistance Copper Collinsella aerofaciens ATCC 25986 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella aerofaciens; 8.67836611 8.441318127 8.555187757 8.554499404 8.733706084 8.683647348 8.333468855 9.041253914 8.297476024 8.647781052 8.88981525 8.829630627 219677975 camDCAB Carbon cycling Carbon degradation Others gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.467618731 8.349231578 8.741505038 7.930264688 7.813505391 7.670297866 7.631671586 7.305841119 8.015765968 7.619674262 7.533828068 7.816485623 34557170 Mex Antibiotic resistance transporter Wolinella succinogenes DSM 1740 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Wolinella;species:Wolinella succinogenes; 9.470649138 9.538509936 9.591578912 8.857574161 9.172236215 8.779018954 8.856427645 8.619987739 8.836513212 8.767676744 8.879571139 8.631361325 280966393 sigma_24 Stress Sigma factors Frankia sp. EuI1c superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.333774761 8.47424935 8.12556899 8.145802767 8.260509808 7.88825083 8.320898367 8.027086181 8.265016662 8.053359625 8.240535189 7.997759502 261412766 sigma_24 Stress Sigma factors Aggregatibacter actinomycetemcomitans D11S-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Aggregatibacter;species:Aggregatibacter actinomycetemcomitans; 9.872543183 9.838346726 9.580901145 8.296541318 9.335669992 9.021588385 9.251215657 8.973633749 9.241658752 8.931009003 9.147797906 9.128811011 116255210 CopA Metal Resistance Copper Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.614409984 8.53751677 8.833024776 8.426928341 8.259849571 8.18962374 8.150791168 8.371211594 8.316920491 8.274902172 8.138896028 8.1733076 83575459 ChrA Metal Resistance Chromium Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 7.437539874 7.537316004 7.112482345 7.288526094 7.466321247 7.070784079 50084607 mdlD Organic Remediation Aromatics Other aromatics Acinetobacter sp. ADP1 9.294384415 9.213345413 9.304124302 8.580493813 8.815974074 8.803213178 8.790049628 8.427629059 9.058952176 8.840572479 9.221275896 9.088590391 126316297 tfdA Organic Remediation Aromatics Chlorinated aromatics Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.429299115 7.976250857 7.595161963 8.413340963 8.431421495 8.163393404 7.982919049 7.882215272 256676491 hrcA Stress Heat shock Streptomyces sp. SPB78 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 9.333330468 9.152826381 8.869507727 9.222746829 9.220554234 8.973745589 9.499101835 9.172431929 9.4460469 9.034709439 9.116650995 9.138874455 261408696 pstC Stress Phosphate limitation Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.473904493 8.377986244 8.185937859 7.823063807 7.930279366 8.029812216 7.489921611 7.749853951 8.028625654 7.916431005 226226576 sigma_38 Stress Sigma factors Gemmatimonas aurantiaca T-27 8.555450241 8.858242562 8.778720015 8.48283906 8.582498774 8.953510353 8.928044303 8.94344793 9.051923029 8.663720173 9.10620218 26278842 narG Nitrogen Denitrification uncultured bacterium 8.802727981 8.530914074 8.455897769 8.616321457 8.46154379 8.268814117 8.592751367 8.368993214 8.309221066 8.325137377 8.352871064 113526540 mdlD Organic Remediation Aromatics Other aromatics Ralstonia eutropha H16 8.703546355 9.086310113 8.670058752 8.297958295 8.127247421 8.076235703 8.191106948 8.272792057 8.183869139 7.950110387 68135537 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.677593835 8.676706587 8.757012535 8.141811526 8.003886656 7.936623527 7.698294526 7.70870545 8.09458186 7.846762418 7.741773983 8.119504543 229869875 B_lactamase_C Antibiotic resistance Beta-lactamases Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 9.00177504 8.816895911 8.773938981 9.189524822 9.17613502 9.309763227 8.817750364 9.43626687 8.604881309 9.234115001 9.410716834 9.472271056 189342180 bphA Organic Remediation Aromatics Polycyclic aromatics Novosphingobium sp. H25 8.648787281 8.4888167 8.952195564 8.285861871 8.110449672 8.061497373 8.274691883 8.340550294 7.968304131 8.296424647 8.228623675 8.285738375 69286724 TerZ Metal Resistance Tellurium Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 7.641982385 7.635233369 7.394301215 6.904421837 7.46458626 8.064649283 7.569434259 7.186954786 7.478208984 145213760 nagI Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 9.291531165 9.272774094 9.294884641 9.146738863 8.967400526 8.829013343 9.199143342 9.002388178 9.045853037 9.043435289 9.089053908 8.992720424 86156746 cytochrome Energy process Energy process Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 8.962501469 8.597754366 8.746043059 8.207126166 8.167880362 8.283952741 8.619339859 8.390638827 8.729274635 8.337787274 8.226972644 8.315722389 116751291 ahpF Stress Oxygen stress Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 8.243745489 8.420488719 8.580028523 8.150247421 8.208192993 7.950516205 8.121793263 8.502586812 8.476885958 8.432439425 8.311071144 8.287634962 257204625 dsrB Sulphur sulfite reductase Roseburia intestinalis L1-82 8.21255384 8.239607569 7.438910073 7.420269275 7.258915248 6.997055696 7.606649554 85668627 fnr Stress Oxygen stress Roseovarius sp. 217 8.962375004 8.493750194 8.076790593 8.507047912 8.320363394 8.425176153 7.989400241 8.760031989 8.415591301 8.202603279 8.441361869 8.055910226 72160988 amyA Carbon cycling Carbon degradation Starch Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 8.43343913 8.668029065 8.405861031 8.50020061 8.499866071 8.555210536 8.707002136 8.489286924 8.210657447 8.457698808 8.421838004 8.105837703 85069042 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.471030145 8.456276573 8.540171383 7.899946247 7.865269741 7.817855242 7.528344105 7.521644754 7.935775577 7.557345581 7.485632214 7.906672398 149201866 fnr Stress Oxygen stress Roseovarius sp. TM1035 9.304761678 9.40832851 9.354065614 8.471448042 8.849441473 9.007503893 9.382257928 8.800452412 9.610738739 8.706055664 8.62660355 8.882198223 169793396 narG Nitrogen Denitrification uncultured bacterium 8.292440581 7.993599438 8.30467115 7.493530475 7.547966666 7.733595951 7.759309805 7.896757357 7.458801803 8.080062088 7.596281314 7.962219149 46399565 czcC Metal Resistance "Cadmium,Cobalt,Zinc" Candidatus Protochlamydia amoebophila UWE25 superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Parachlamydiaceae;genus:Candidatus Protochlamydia;species:Candidatus Protochlamydia amoebophila; 8.349322521 8.169450905 8.317178866 8.346306475 8.004576533 8.162285123 8.51361398 8.274718679 8.393038375 8.129529145 8.304310486 150274229 CopA Metal Resistance Copper Bacteroides capillosus ATCC 29799 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides capillosus; 9.533756562 9.660530291 9.631841114 9.070345977 9.01440369 8.984561247 8.868630373 8.759762352 8.913975689 8.788367684 8.888343958 9.111804416 260938696 iuc virulence aerobactin Vibrio orientalis CIP 102891 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 8.472733066 8.336474666 8.581274994 8.047564687 7.758056892 7.857616809 7.537148239 6.923037627 7.795280623 7.369441521 7.311925457 7.889795151 19421863 rd Organic Remediation Chlorinated solvents Desulfitobacterium hafniense 8.626196809 8.57756053 8.801400705 8.706174082 8.297318544 7.854444633 8.277462873 8.080751541 8.404280504 8.219220907 8.189220175 8.200609478 157804739 APS_AprA Sulphur adenylylsulfate reductase Thiocystis violascens 8.345608199 8.277136649 8.432340157 7.704109447 7.591945152 7.51151324 7.413939199 7.710603479 7.764805749 7.50700825 7.558652733 7.785471251 32445000 sigma_70 Stress Sigma factors Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 8.496332577 8.80905445 8.950094921 8.698838329 8.926440045 8.780366792 163857897 MFS_antibiotic Antibiotic resistance transporter Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 9.473138244 9.462140201 9.290272573 8.992752908 8.820044405 8.582063108 9.017803717 8.918542413 9.353172949 9.035410775 9.042192161 9.165698444 56677348 inv virulence invasion Ruegeria pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 9.093514351 8.834041962 8.849088299 8.753890926 8.49662768 8.514270808 8.366615559 8.648259926 8.289644755 8.688157114 8.588258106 8.924897797 227062612 clpC Stress Protein stress Thermobaculum terrenum ATCC BAA-798 superkingdom:Bacteria;genus:Thermobaculum;species:Thermobaculum terrenum; 8.978552761 8.660183061 8.709032921 8.061960777 8.198223325 8.355453818 8.495363364 7.732777903 8.386910632 8.036743281 8.213463352 8.396299712 78459397 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 9.279789328 9.082105902 9.093041824 8.823700584 8.629090831 8.773106829 8.867993429 8.70243196 8.65990542 8.842882356 8.953931334 8.698238497 94471219 narG Nitrogen Denitrification uncultured bacterium 8.530512945 8.158059542 8.208015613 8.425631183 7.886607648 8.259959363 8.438778496 8.003025199 8.739035304 8.170888821 27530821 gyrB other category gyrB Nocardia brevicatena superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia; 9.471056812 9.494774672 9.178629 9.212386509 9.449312821 9.515883444 9.506977173 9.728108422 9.398741915 9.761590983 9.757649621 9.764764674 37521840 hrcA Stress Heat shock Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 9.00755048 9.082109737 9.312557205 8.525585199 8.486161647 8.663586205 8.30387801 8.101109678 8.738148458 8.473022567 8.378120896 8.750884054 68546461 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 9.227895986 8.796762011 8.821408157 9.006564255 8.761396927 8.487775354 8.847422589 8.843940505 8.62670071 8.680283337 8.414642162 8.648228372 254514875 sigma_38 Stress Sigma factors gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.635639464 8.698332478 8.262030031 7.812005046 7.495736024 7.9464849 7.675051655 8.062932319 7.686594196 7.6673151 224282950 Tet Antibiotic resistance other Bifidobacterium bifidum NCIMB 41171 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium bifidum; 8.175058229 8.473896625 7.997594591 7.594343066 7.694090417 8.362705403 8.153312654 7.719575082 8.462676899 8.103561458 8.088695657 77976377 AceA Carbon cycling Carbon degradation others Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 9.170905584 8.937086264 9.022765463 8.396832352 8.38034175 8.198750679 8.648150573 8.345443198 8.806623351 8.63113561 8.733037248 8.662063865 90422890 AceA Carbon cycling Carbon degradation others Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.605074733 9.000023573 8.840724754 8.289737679 8.3126458 8.323373017 8.55297438 8.448162123 8.558535389 8.86391142 8.705585315 8.570843228 19909603 gyrB other category gyrB Halobacterium salinarum superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halobacterium; 8.586683859 8.710357281 8.520334188 8.542579129 8.129114322 8.474982643 8.384789861 8.447615633 8.403906169 8.6170158 8.538719009 8.627422979 225874757 B_lactamase_C Antibiotic resistance Beta-lactamases Acidobacterium capsulatum ATCC 51196 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteria;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 8.858030411 8.372402593 8.488305895 8.218587312 8.245275523 8.003020173 7.639830475 7.997244862 7.994693618 8.092068529 7.845623826 8.040054917 85085112 nagG Organic Remediation Aromatics Aromatic carboxylic acid Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 9.178473989 9.153202033 9.454482706 8.503508996 8.291237069 8.497832104 8.042332565 8.054864399 8.358814136 8.439886808 8.557878152 219994782 ChrA Metal Resistance Chromium Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 9.315629479 8.645416029 8.470935806 9.648514874 9.631839783 9.509009517 9.440268725 9.413267365 8.862889051 9.318855754 9.093519492 9.375774281 91682311 AceB Carbon cycling Carbon degradation others Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.496002003 8.559829308 8.405058467 8.48396015 8.358369412 8.198100247 8.515661366 8.791342849 8.881818611 8.672496781 8.582695937 254667884 iro virulence Neisseria meningitidis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria meningitidis; 8.719599743 8.85693018 8.397667033 8.202061973 8.545243034 8.216667703 8.100689464 8.34713548 8.801459729 8.28564698 8.322602171 8.333004781 70732700 pcaG Organic Remediation Aromatics Other aromatics Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 9.104646656 9.140277559 9.234773056 8.625504393 8.368450087 8.554316594 7.902931687 7.784408013 8.259430749 8.354696118 8.252072994 8.626157456 118414988 CopA Metal Resistance Copper Campylobacter fetus subsp. fetus 82-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter fetus; 8.547117301 8.049736177 8.175483278 8.033129289 8.04184615 8.007005565 8.025243152 84383828 pulA Carbon cycling Carbon degradation Starch Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 8.249777966 8.252201217 7.782559472 7.774273188 8.066408336 8.277203456 7.869991348 8.351571402 7.742570222 7.774739111 7.819081692 219549122 MATE_antibiotic Antibiotic resistance transporter Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 8.278855272 8.330368656 8.405565895 8.435896515 8.308595231 8.392504352 8.619419755 8.453849689 8.465120463 8.507444584 8.46727156 8.325628559 1850786 nhh Organic Remediation Aromatics Nitoaromatics Rhodococcus rhodochrous superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.350806272 8.513814067 8.694035733 8.655902792 8.586834075 8.338962672 8.756596351 8.611772903 8.424251583 8.626723224 8.306405503 149277811 sigma_70 Stress Sigma factors Pedobacter sp. BAL39 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter; 8.676314324 8.719030725 8.711542447 7.888052396 8.485655826 8.531949073 8.240511409 8.479489147 8.66126558 8.819576301 8.568128815 209875076 CusA Metal Resistance Copper Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 9.200937117 9.020789396 9.1347954 9.121229464 9.118082211 8.90598981 9.083243772 9.095045434 9.153062064 9.048247005 8.911469731 8.987126028 193214633 pstB Stress Phosphate limitation Chloroherpeton thalassium ATCC 35110 8.450489307 8.719621383 8.639013881 8.413308225 8.323977931 8.248832196 7.7804313 7.733381875 8.03631663 8.252431614 121999026 AceB Carbon cycling Carbon degradation others Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 8.978348674 8.826324415 8.698553056 8.408545373 8.298305594 8.2780735 8.386874262 8.268546826 8.365671587 8.102757499 8.250923588 8.330552403 257804875 proV Stress Osmotic stress Enterococcus gallinarum EG2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus gallinarum; 8.293290347 8.022352248 8.351081603 7.869581362 7.728378348 7.59878138 7.397971408 7.308260273 8.01499402 7.59163716 7.592268745 7.738202619 210076764 pstB Stress Phosphate limitation Citrobacter rodentium 7.192830011 7.107071819 7.279169001 7.089257307 7.039463977 193216311 TehB Metal Resistance Tellurium Chloroherpeton thalassium ATCC 35110 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chloroherpeton;species:Chloroherpeton thalassium; 8.331799919 8.301012553 8.456857715 7.520458778 7.522763848 7.883553924 7.600908112 7.459343736 7.796336238 7.354904654 7.632927796 7.825727897 119466284 CopA Metal Resistance Copper Nodularia spumigena CCY9414 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nodularia;species:Nodularia spumigena; 8.990482186 9.056695566 9.060525651 8.600077014 8.496965488 8.407380547 8.134683068 8.251257621 8.424459769 8.120576356 8.268752375 8.526801496 118172199 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.667976599 8.591940193 8.410213023 8.534911278 8.38699518 8.276154253 8.534766117 8.42236671 8.295704124 8.299360675 8.278122868 8.220093012 119774539 cellobiase Carbon cycling Carbon degradation Cellulose Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 8.61641392 8.289540428 8.33202486 8.754363302 8.442934533 8.100814234 8.418525362 8.620863852 8.302782411 8.457248561 8.681316956 7.945607988 238927770 narI Stress Oxygen limitation Selenomonas flueggei ATCC 43531 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas flueggei; 8.179196136 8.027558562 8.450749191 7.856216165 7.637916284 7.681667294 7.93194692 7.48965531 8.446089273 7.672907547 7.459126774 7.671272234 171914263 TerD Metal Resistance Tellurium Verrucomicrobium spinosum DSM 4136 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Verrucomicrobium;species:Verrucomicrobium spinosum; 7.825816599 7.697701716 7.842531262 134050922 TerD Metal Resistance Tellurium Desulfotomaculum reducens MI-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum reducens; 9.405987333 9.4743382 9.560572803 8.864932071 8.548721538 8.934968755 9.190204908 8.919764428 8.879779285 8.986101107 9.278325908 9.111634873 33414629 DNA_polymerase_type_I Bacteria phage REPLICATION Bacteriophage Aeh1 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 8.062988465 8.119092145 8.068692604 8.131560758 7.918912801 7.732346302 8.006318553 8.182127266 8.477465687 8.036262638 8.137637109 218516356 nagK Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium etli 8C-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 9.019336871 8.93253389 9.198533947 8.946579284 8.794085812 8.43468161 8.447061039 8.719363761 8.462324179 8.611117664 8.442348033 8.863171548 223578709 CadA Metal Resistance Cadmium Tolumonas auensis DSM 9187 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Tolumonas;species:Tolumonas auensis; 9.793748107 9.697688978 9.762463923 9.102573599 8.681496631 9.097837118 8.811273052 8.737997588 68182774 CODH Carbon cycling Carbon fixation Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 8.065770025 8.134533328 7.130538109 7.361803167 7.678820231 7.404114318 7.37233653 7.90014597 7.599238223 7.502980531 7.899110192 115364910 katE Stress Oxygen stress Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 9.189236551 9.219048289 9.421416823 8.639610591 8.493452399 8.655619771 8.481763482 8.595303645 8.382454027 8.783900863 8.612917957 8.734396903 207739320 alkK Organic Remediation Others Ralstonia solanacearum IPO1609 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 9.332156825 9.541951841 9.125544616 9.478007638 9.701668764 9.556015867 10.08423576 9.796055405 9.638631694 9.811639182 10.13830821 9.948251238 168148915 endolysin_transglycosylase Bacteria phage LYSIS Azospirillum phage Cd order:Caudovirales;family:Siphoviridae; 8.487660759 8.473303773 8.817200245 8.170282315 8.44947944 8.612942907 8.639019023 8.869522356 8.575311201 9.041834672 8.845184512 8.62326269 121605776 silC Metal Resistance Silver Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8.119423781 8.264794501 8.388129722 8.551728054 8.687483416 8.39503515 8.403473825 8.589906105 8.58870721 8.471779041 8.270773031 7.875912363 222110696 silC Metal Resistance Silver Diaphorobacter sp. TPSY superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax ebreus; 8.773814152 8.710151189 8.97265067 8.39983752 8.206805024 8.493449996 8.365410092 8.401445986 8.165067664 8.253281927 8.57182192 56910681 alkK Organic Remediation Others Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 8.481935585 8.482761375 8.52597603 7.858630082 7.767394336 7.850522806 7.546841838 7.388440224 8.057908555 7.507616624 7.59424204 7.774190613 183599410 ppx Phosphorus Phosphorus utilization Providencia stuartii ATCC 25827 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia stuartii; 8.334798641 8.552962136 8.895000795 8.076924198 7.998209465 8.134248254 7.818479351 8.155228671 7.669267285 7.80504043 8.145814563 54018310 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 9.445810629 9.19615554 9.144974675 9.870554012 9.795561616 9.544586839 9.971845784 9.780332352 9.550847609 9.715815782 9.78200268 9.331066722 86570282 vanA Carbon cycling Carbon degradation Others Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.664745953 9.18198264 9.092707839 9.369502204 9.24746396 9.065690343 9.025760822 9.394622754 8.860315515 9.320434371 8.888152024 8.576597078 126629427 atzB Organic Remediation Herbicides related compound Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 9.170375682 8.446190029 8.312476386 8.889692186 8.7014004 8.482715857 8.506509945 8.558583404 8.445151452 8.569539479 8.637390211 8.495580049 37925897 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.569529317 8.479427697 8.619318761 8.19043678 8.208506082 8.195278701 8.200770084 8.221509485 8.332250539 8.054846627 8.071393703 8.198381221 223892904 phoB Stress Phosphate limitation bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 8.538405223 8.857867772 8.988303779 8.460138662 8.381520313 8.290261109 7.864496593 7.976415185 8.123545726 8.075423088 8.226361176 8.504354616 221083729 nhh Organic Remediation Aromatics Nitoaromatics Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 8.899975846 9.004984957 9.066415982 8.613475282 8.662904283 8.529971039 8.450808613 8.688206315 8.505293363 8.801386108 8.701407297 8.526853557 94471253 narG Nitrogen Denitrification uncultured bacterium 8.637632844 8.636984377 8.550183828 8.519719418 8.539216509 8.331669111 8.400874758 8.66576804 8.568358813 8.748319667 8.547695148 8.686422874 15841949 ahpC Stress Oxygen stress Mycobacterium tuberculosis CDC1551 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 8.537438533 8.662511204 8.818293564 8.1562355 8.208996901 7.980894056 7.643329096 7.661372712 8.205643117 7.893941412 7.664346957 8.011787033 58418754 pstB Stress Phosphate limitation Wolbachia endosymbiont strain TRS of Brugia malayi 9.151617066 9.061815449 9.238689893 8.555760862 8.514905938 8.548001359 8.226252536 8.07702094 8.311195146 8.286960252 8.358054285 8.741465348 152978401 sigma_70 Stress Sigma factors Actinobacillus succinogenes 130Z superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus succinogenes; 9.443465125 9.343000289 9.665335027 9.075194045 8.893111632 8.58041973 8.582402778 8.692560971 8.585131432 8.660562156 9.025760277 126194731 limEH Carbon cycling Carbon degradation Others Pseudomonas aeruginosa 2192 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.4031866 8.077857663 8.539040549 8.178005107 7.123546592 8.25663677 8.095580538 7.893630268 7.828335991 7.771833043 126249557 AceB Carbon cycling Carbon degradation others Pyrobaculum calidifontis JCM 11548 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum calidifontis; 10.15855883 10.10542613 9.992797674 9.706896166 9.743884055 9.563755298 9.688363138 9.727797818 9.94514493 9.924655021 10.08619545 9.883819344 86158525 cytochrome Energy process Energy process Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 8.335641562 8.258005615 8.091507639 8.125076583 8.260490419 7.982534397 7.945557959 8.029009941 8.335615554 8.107018565 7.922003186 7.899513675 238593253 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 9.510750256 9.473471284 9.598622488 8.734054073 8.665885487 8.540926246 8.692943364 8.598313702 8.219466742 8.679995842 8.602697123 8.883254737 161833805 gyrB other category gyrB Candidatus Sulcia muelleri GWSS superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;genus:Candidatus Sulcia;species:Candidatus Sulcia muelleri; 7.357461203 7.197759952 7.180130216 6.916661999 7.085608913 87331868 cumA Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 9.033641606 9.064973297 9.367542774 8.685673626 8.539262318 8.426122644 8.308805774 8.487825681 8.514305112 8.597810036 8.350531231 8.706042936 116250910 sigma_24 Stress Sigma factors Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.217072833 7.996736772 8.212791655 7.461475004 7.515701679 7.247892398 7.332668352 7.614768798 7.522502341 7.438217403 229213854 phoA Stress Phosphate limitation Dethiosulfovibrio peptidovorans DSM 11002 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Dethiosulfovibrio;species:Dethiosulfovibrio peptidovorans; 9.023200085 9.264983792 9.128624299 8.583467686 8.455271339 8.512897973 8.368407055 8.851544026 8.623445734 8.960582999 8.758581662 8.888598591 118672350 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 8.879835796 9.234092232 8.765441187 8.899443062 9.140420156 9.243398434 9.484293515 9.084532958 9.15978593 8.858065283 8.936873166 8.793802628 149917001 sigma_70 Stress Sigma factors Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 9.160403566 9.266086723 9.421580462 8.93293168 9.042886051 8.948733095 8.801438315 8.809981962 8.715953219 8.802841291 8.799492532 9.0713036 156187976 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 9.07568833 9.266690424 9.075953897 9.207633166 9.258010046 9.237176367 9.464501486 9.537987546 9.131929385 9.659919918 9.728535611 9.394153747 104783750 CorC Metal Resistance Cobalt Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 7.796945033 7.647854151 7.712415948 7.320962 8.035200788 7.837597672 7.861962866 7.649667215 8.012887771 119958175 tftH Organic Remediation Aromatics Chlorinated aromatics Mycobacterium vanbaalenii PYR-1 8.317325977 8.148180008 7.644200876 7.397531994 7.779590083 7.812536778 8.121155126 8.253256153 7.679030812 8.11128745 89321031 CopA Metal Resistance Copper Mycobacterium flavescens PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 9.067383707 8.787879442 8.826367767 8.940108691 8.556769763 8.492922755 9.110534911 8.887896251 8.99313933 8.902744912 8.888135133 8.673640931 20809018 GroES Stress Heat shock Thermoanaerobacter tengcongensis MB4 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Thermoanaerobacter;species:Thermoanaerobacter tengcongensis; 8.145397398 8.21903554 6.773235616 7.536886275 29829766 katE Stress Oxygen stress Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 9.605592497 9.356217376 9.426065048 9.246058126 9.131905912 9.144161335 9.282875283 9.106692065 9.46202461 9.180210986 9.199083584 9.098735266 56313425 MFS_antibiotic Antibiotic resistance transporter Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 9.215071391 9.139712136 9.011230175 9.25766083 9.410238005 9.097371944 9.166078561 9.616276872 9.114546371 9.455821832 9.235724661 9.365625728 169242378 nagG Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium abscessus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 9.696423037 9.447126413 9.48408073 9.334557752 9.460605587 9.319051497 8.975872551 9.273260872 8.992409137 9.361471712 9.488242239 9.631490604 153887830 pcaG Organic Remediation Aromatics Other aromatics Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.369375741 8.342543618 8.100645468 7.98099662 7.85473183 8.21379003 8.723233778 7.95853914 8.623811233 8.084446432 8.321468836 8.292926766 182415865 sigma_24 Stress Sigma factors Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 9.377642371 9.482276793 9.562744104 8.961940558 8.941231709 8.928825327 8.556611662 8.621449929 8.88250888 8.939147276 8.862656379 9.124461474 118616369 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 8.610361259 8.664125437 8.775412024 8.124221575 8.107699793 8.294876719 8.460694835 8.440451734 8.558271216 8.406483527 8.385191724 190686043 oxyR Stress Oxygen stress Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 9.781939805 9.828064665 9.767769141 9.205685606 9.117124907 9.181054212 8.836910692 8.726993629 8.771419388 8.798649223 9.008852589 9.310619009 6460912 linB Organic Remediation Pesticides related compound Deinococcus radiodurans R1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 8.823695295 9.038027042 8.921480184 8.184450343 8.149351079 8.646135195 9.205798758 8.559196294 9.14108839 8.341606182 8.260309369 8.423882235 189341260 pstC Stress Phosphate limitation Chlorobium limicola DSM 245 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium limicola; 9.500560238 9.94277102 9.808678604 9.399173056 9.705630758 9.685530854 9.656737769 10.08188896 9.668292379 9.907908323 9.967363295 9.57620306 118761900 catB Organic Remediation Aromatics BTEX and related aromatics Sphingomonas wittichii RW1 9.082490024 9.048829311 8.891557338 9.046529939 8.854594839 8.644786612 9.106498435 8.974954683 8.953029612 8.86433924 8.723981542 8.593865149 151302310 APS_AprB Sulphur adenylylsulfate reductase Desulfobacterium anilini superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium; 7.751410128 7.63935292 7.73173243 8.102163452 8.037706001 8.015832827 8.28101507 283809747 sigma_70 Stress Sigma factors Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 8.554583554 8.981313957 8.679231189 8.106227189 7.863094792 8.036834181 7.944038359 8.133837406 7.882939898 7.986485495 8.057539331 167729121 obgE Stress Radiation stress Candidatus Cloacamonas acidaminovorans superkingdom:Bacteria;genus:Candidatus Cloacamonas; 8.856445684 8.266957567 8.522995071 7.740627376 7.778016754 7.887944902 7.450686106 7.210127668 7.471216258 7.861722483 7.994709481 111071908 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.044717453 8.237617162 8.330723509 7.811954977 7.593744065 7.403604876 7.472813695 7.639513564 7.87399842 7.492348255 7.206167813 7.324844441 239910816 pstB Stress Phosphate limitation Thermococcus gammatolerans EJ3 8.560006933 8.350238099 8.66644498 7.766151946 7.986505 7.592035629 7.541613986 7.467420891 7.871606696 7.736018719 7.688557458 7.855783202 7190353 amyA Carbon cycling Carbon degradation Starch Chlamydia muridarum Nigg 8.518371211 8.662347601 8.97838183 8.728744539 8.668391623 8.545148883 9.034460822 8.965306423 8.426499949 9.06614188 8.815391873 8.569215618 625180 xylA Carbon cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga; 8.026905984 7.933372943 8.16533396 7.413230416 7.127197283 7.160898554 88813589 MFS_antibiotic Antibiotic resistance transporter Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 8.830586866 8.747961539 8.773466648 8.413978472 8.399634704 8.538993873 8.548473431 8.467222424 8.607729006 8.531738696 8.406522057 8.580623191 11037227 pcaG Organic Remediation Aromatics Other aromatics Agrobacterium tumefaciens superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 9.221884813 9.174790391 9.265704627 8.602050118 8.549772233 8.483620903 8.515755417 8.198215813 8.366278916 8.368864209 8.3808433 8.676514252 29609465 TerZ Metal Resistance Tellurium Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 8.53730701 8.475440617 8.59437329 7.714608538 7.674538467 7.959851896 8.3617177 8.090292726 8.269630648 7.754861784 7.799477466 7.917932947 262197293 Tet Antibiotic resistance other Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Haliangiaceae;genus:Haliangium;species:Haliangium ochraceum; 8.600050873 8.475116493 8.023282982 7.657430013 8.046165196 8.600441262 8.164722479 8.14591237 7.832081393 8.013080973 7.821778344 126249062 CopA Metal Resistance Copper Pyrobaculum calidifontis JCM 11548 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum calidifontis; 9.682334132 9.480220669 9.62853426 9.029935926 8.544433695 8.937772859 9.067803764 8.92239016 8.747479239 8.897594558 9.024179349 9.032264731 224712622 hzo Nitrogen Anammox uncultured planctomycete 9.306520237 9.840223537 9.578432188 8.356934546 8.81812892 9.237252965 121605105 pstC Stress Phosphate limitation Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8.767686956 8.605609016 8.869159684 8.493390587 8.608234719 8.317353349 8.629787186 9.190739925 8.561689375 8.737415337 8.387366247 8.581161267 89348595 Xamo Organic Remediation Other Hydrocarbons Xanthobacter autotrophicus Py2 8.322116384 8.06864172 8.321716781 7.706902908 7.883270797 8.060205725 7.823271349 7.804462172 8.277144468 7.806863316 7.868405603 7.736150905 168702919 sigma_24 Stress Sigma factors Gemmata obscuriglobus UQM 2246 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata;species:Gemmata obscuriglobus; 8.175736086 8.451048893 7.633790346 8.236495305 8.098373572 7.667186978 8.222943404 7.980020314 8.024002686 8.096455029 8.035175606 268317797 AceA Carbon cycling Carbon degradation others Rhodothermus marinus DSM 4252 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 8.628897778 9.220711373 9.039189032 9.280862319 9.298968051 8.984352584 9.619784385 9.510865874 9.186815146 9.264623962 9.202456629 8.773679521 119670687 nahA Organic Remediation Aromatics Polycyclic aromatics Azoarcus sp. BH72 10.39494307 9.724126441 9.416532115 10.53778202 10.14100587 10.0205767 10.5152417 10.30464399 10.22159921 10.28748202 10.18865773 9.895718372 138754346 mcrA Carbon cycling Methane Methane production uncultured archaeon superkingdom:Archaea; 8.247733274 8.156500505 7.746239712 7.88045901 7.909244099 7.939210308 8.351715551 7.993897974 8.399066104 8.089395635 8.104844426 86156976 linB Organic Remediation Pesticides related compound Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 9.623571291 9.454380964 9.59866725 9.275303119 9.179143608 9.077726777 8.995090936 9.474581531 9.193448339 9.200142986 9.233397312 9.427724527 269142143 iro virulence Brevundimonas subvibrioides ATCC 15264 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas;species:Brevundimonas subvibrioides; 9.02284776 8.677162189 8.613254999 8.727723684 8.509701332 8.268778471 8.287364412 8.429853777 8.604151924 8.404399094 8.393771395 8.686997143 68346920 pilin virulence pilin Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 9.552537397 9.384068685 9.58870685 9.147153247 9.101705455 8.919468098 9.599506665 9.540317988 9.629911414 9.313331321 9.398951005 9.646019176 228308647 cydB Stress Oxygen limitation Porphyromonas uenonis 60-3 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas;species:Porphyromonas uenonis; 8.780935644 8.483010406 8.180388172 8.518132766 8.369674525 8.805212671 8.614416201 8.350957925 8.743909773 8.224184282 224603800 fnr Stress Oxygen stress Lutiella nitroferrum 2002 8.850155197 8.745087545 8.624884985 8.102404214 8.422181757 8.490307667 8.809541982 7.99636513 8.617110149 8.341163022 8.312716066 8.305388237 86751473 sox Sulphur Sulphur oxidation Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.074060971 9.004690374 8.560960698 8.928754241 8.510328711 8.75625027 9.224344506 8.82592225 8.584281763 8.328115223 8.355147368 8.405144948 169242539 clpC Stress Protein stress Mycobacterium abscessus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.746318007 8.803995325 8.902727924 8.044870729 8.062761646 7.868255867 7.787878854 7.886063667 8.131890788 7.879142672 7.766928584 8.307652383 94471117 narG Nitrogen Denitrification uncultured bacterium 8.260276056 8.247708534 8.215081874 8.340754863 8.327316055 8.050233795 8.214018024 8.159468082 8.207353886 8.062666765 7.851482784 198262526 pimF Organic Remediation Aromatics Aromatic carboxylic acid gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 9.681077498 9.690282432 9.842810859 9.278933704 9.3449081 9.194065332 255003048 sigma_70 Stress Sigma factors Anaplasma marginale str. Puerto Rico superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales;family:Anaplasmataceae;genus:Anaplasma;species:Anaplasma marginale; 9.112317862 9.188201752 9.227339224 8.480795109 8.543277064 8.810196791 8.698738236 8.429917169 8.797371297 8.48702034 8.498845396 8.748263742 218758526 pstB Stress Phosphate limitation Desulfovibrio vulgaris str. 'Miyazaki F' 8.235342577 8.035961317 8.279333499 7.71729558 8.348595755 8.031598355 8.340847061 7.92587923 82714858 pcaG Organic Remediation Aromatics Other aromatics Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.770890046 8.787642304 8.487456432 8.201935904 8.455551541 8.357280682 8.324416447 8.146473048 8.593672504 8.257008692 8.474972915 8.429526327 124514741 glycosyl_transferase_EPS Bioleaching EPS Leptospirillum sp. Group II UBA 8.676428815 8.622784503 9.00987526 8.308104801 8.256514654 8.230957294 8.063573884 7.992756683 8.291964388 8.097129943 7.949544708 8.2458676 157960084 proV Stress Osmotic stress Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 8.028812185 8.635536806 8.516544197 8.187690086 8.127065301 7.837898192 7.995921901 7.762004683 8.342024428 7.923531988 7.883760938 7.829616818 15157718 tftH Organic Remediation Aromatics Chlorinated aromatics Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.188233023 8.534373629 8.356960746 8.599264998 8.496779158 7.895476304 8.664249948 7.824955382 8.200956945 8.354081779 8.204067918 6681581 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Streptomyces thermoviolaceus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.123013624 8.205370692 8.210619468 7.785902641 7.940075583 8.011849707 8.182976124 7.88345022 8.288855103 7.92611301 7.915939958 8.197826867 120611544 pimF Organic Remediation Aromatics Aromatic carboxylic acid Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 9.412165312 9.293436682 9.252696453 8.905746681 8.509181531 8.49767906 8.847381053 8.565516883 9.0911044 8.617479329 8.682771908 8.594070776 90954557 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.710335227 8.488034386 8.576474072 8.528335517 8.55826194 8.346796928 8.890737472 8.912042405 8.588554993 8.53488538 8.530597361 8.443360146 253756967 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 7.465685267 7.228617393 7.549034273 7.317748785 6.821522425 7.927834324 7.093699126 7.246918846 7.407769494 50084762 sdsA Organic Remediation Others Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 8.429921574 8.427948134 8.66805666 7.692626983 7.675411847 7.75205455 7.485705913 7.294166045 7.950210245 167348709 CopA Metal Resistance Copper Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 9.519035757 9.346054805 8.955266409 9.271259833 9.012210265 8.875014131 9.220431967 9.1274181 9.05743069 9.108456322 9.101281324 9.056180827 170721567 phdCI Organic Remediation Aromatics Polycyclic aromatics Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.474605085 8.635080523 8.384641459 8.369043705 8.360845605 8.17019818 8.294353853 8.296362611 8.464833116 8.227455901 7.812238044 238060081 amyA Carbon cycling Carbon degradation Starch Micromonospora sp. ATCC 39149 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 8.555207012 8.557755303 8.673207938 8.169772904 8.100231248 8.03014699 7.744603757 7.904571108 7.921210065 7.926970435 8.128817337 8.130554435 183976694 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9.916856024 9.890515684 9.925049724 9.24369387 9.182630872 9.249928065 9.190995186 9.1034008 8.945436192 9.259457965 9.322535529 9.580555721 120610839 pimF Organic Remediation Aromatics Aromatic carboxylic acid Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 9.698659139 9.566296723 9.608008542 9.387358266 9.411156484 9.308761527 9.599692067 9.671781194 9.43126087 9.674893552 9.480277534 9.474241263 188532320 fimbriae virulence fimbriae Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 9.420291416 9.146659883 9.576437745 8.634256367 8.63978086 8.505313717 8.508005769 8.223566915 8.391431856 8.394969063 8.806000176 113945922 endochitinase Carbon cycling Carbon degradation Chitin Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 9.78887241 9.905187248 10.00410695 8.979407201 9.147530419 9.173844819 9.13146778 8.884881113 9.092256724 9.134642759 9.122627898 9.429296825 37199310 CadA Metal Resistance Cadmium Vibrio vulnificus YJ016 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 9.132990447 9.024441442 9.112993762 8.1484876 8.071356195 8.087025666 8.224804277 7.987705909 8.126956219 8.208331176 7.974128843 8.220205999 31747792 nitrogen_fixation_genes Bioleaching Nitrogen Leptospirillum ferrooxidans 8.32887801 8.019333284 7.700326541 7.196043765 7.250581662 7.36251356 7.444591084 7.297720649 7.440846018 238765251 cydB Stress Oxygen limitation Yersinia kristensenii ATCC 33638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia kristensenii; 8.499399478 8.326566066 8.553900364 7.948796641 7.783290025 7.885587791 7.643000134 7.677879418 7.644919273 7.8000657 7.974633663 256379712 clpC Stress Protein stress Actinosynnema mirum DSM 43827 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinosynnemataceae;genus:Actinosynnema;species:Actinosynnema mirum; 8.371780191 8.520038566 8.526474715 8.47825302 8.508553659 8.336845958 8.495049493 8.93096052 8.528645344 8.816587467 8.414661886 8.616470938 183581325 glnA Stress Nitrogen limitation Kocuria rhizophila DC2201 8.769449324 8.863264647 8.877105548 8.33629595 8.979571822 9.05893542 8.938388015 9.208923184 9.199880564 9.034550359 8.785528102 194566606 pnbA Organic Remediation Aromatics Nitoaromatics Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 8.831434907 8.693121454 8.710883373 8.602555418 8.079756591 8.538274593 8.988197377 8.789112671 8.481954411 8.39866914 8.435083814 8.347693763 56312562 badK Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. EbN1 8.128968143 8.100855398 7.458021632 7.491729545 7.567293473 7.543801156 7.379013304 7.04428052 7.133072173 7.403566854 69933119 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.94082706 8.785955031 8.716598872 8.636683336 8.768227868 8.395113601 8.88055394 8.498874849 8.760877769 8.770415608 8.688797355 241662081 pilin virulence pilin Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.515749555 8.277613254 8.500761002 8.123786605 8.276138006 8.274177828 7.975467601 8.291271484 7.970720087 8.123152215 8.180428814 8.312036405 227549113 oxyR Stress Oxygen stress Corynebacterium lipophiloflavum DSM 44291 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium lipophiloflavum; 9.544865053 9.623961104 9.747004492 8.925961066 8.870326568 8.612519107 8.492702504 8.75822237 82740121 ZntA Metal Resistance Zinc Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.843460276 9.026798387 8.528426192 9.157163381 9.088995921 8.574396556 9.06229724 9.03532699 8.610447099 8.83174043 8.796201634 8.749752962 192283443 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.192655565 8.301976615 8.126239985 7.814343764 8.204908483 7.931723132 7.902356328 8.291864615 7.942257205 8.138447636 7.986161032 126232912 chnB Organic Remediation Other Hydrocarbons Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 9.100729409 9.202702814 9.176109592 9.178926822 9.269447366 9.054126416 9.215992337 9.387970296 9.16363167 9.326605241 9.225095201 8.93755166 150959145 MFS_antibiotic Antibiotic resistance transporter Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.928909161 8.832174856 8.797730897 8.100528258 7.925830336 8.178866153 8.206301199 8.094716773 8.186433996 7.997951822 8.383957557 8.326508366 84043015 pcaG Organic Remediation Aromatics Other aromatics uncultured bacterium 8.328010265 8.140740228 8.886147389 8.245061383 8.393123412 8.244242806 7.982547591 8.417810162 7.993810824 8.183445041 8.177879527 8.291681568 264680154 katE Stress Oxygen stress Comamonas testosteroni CNB-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.057827158 7.900118876 8.144033043 6.982510242 6.972647491 7.358187968 7.210864642 6.847341658 7.489782051 7.164921422 6.969082279 7.280969143 186475654 ppx Phosphorus Phosphorus utilization Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.418849837 8.188938064 8.444913545 7.944851996 7.836928303 7.790279473 7.825773471 7.487493291 7.960984645 7.81979478 7.853472214 7.936608874 104781857 MFS_antibiotic Antibiotic resistance transporter Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 9.006181167 8.959850468 9.238060213 9.009816981 8.925506126 8.688474914 8.860064518 9.46135136 9.074243129 9.050649795 9.429615472 9.518138495 170124657 AceB Carbon cycling Carbon degradation others Escherichia albertii TW07627 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 7.98720837 7.911450719 7.37105337 7.626575114 7.421300248 7.122469745 7.151490783 8.010017327 7.084066853 7.070415356 7.315535863 168701486 pstB Stress Phosphate limitation Gemmata obscuriglobus UQM 2246 9.257146561 9.233669865 9.144763302 9.083799273 8.901275808 8.96465779 8.826143241 9.088872388 8.836552808 9.088896703 9.003953196 9.059737654 167070744 ara Carbon cycling Carbon degradation Hemicellulose Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 9.013912776 8.981086659 8.879979388 8.964850023 8.773162035 8.755946619 9.019830093 8.702922657 8.93931447 8.944459312 8.892607737 28410311 gyrB other category gyrB Tropheryma whipplei TW08/27 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;genus:Tropheryma;species:Tropheryma whipplei; 8.861018777 8.699707003 8.902211635 8.28934039 7.873047532 8.1044585 8.008346369 7.895916736 8.115041319 8.325339593 8.446782462 170656774 phn Organic Remediation Herbicides related compound Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 9.630457509 9.464959489 9.316415178 9.191442223 9.187635365 9.168563171 9.499224966 9.055946182 9.262239145 9.206639616 9.171445717 9.163868032 114563719 cytochrome Energy process Energy process Shewanella frigidimarina NCIMB 400 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella frigidimarina; 8.234591317 8.313983634 8.895279101 8.699261029 8.240951221 8.666682195 8.654202474 8.401596214 8.448338491 7.999031367 8.463346098 163741937 pcaG Organic Remediation Aromatics Other aromatics Phaeobacter gallaeciensis 2.10 8.587118338 8.416461605 8.126722601 8.27024865 8.45120686 7.999544251 8.186095342 8.505906401 8.455189479 8.602733895 8.304000952 170700590 bphF1 Organic Remediation Aromatics Polycyclic aromatics Burkholderia ambifaria IOP40-10 8.513968882 8.34341221 7.613953251 7.770339015 7.65512606 7.278329997 7.69741847 8.162514013 8.05733001 258508060 bglH Stress Glucose limitation Lactobacillus rhamnosus GG superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 7.033459236 6.959290612 220922349 catB Organic Remediation Aromatics BTEX and related aromatics Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 8.429605491 8.494696382 8.037758116 8.224673611 8.585802977 8.377082428 8.532144904 8.28211971 8.641887193 118424307 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.501486986 8.427689556 8.069776524 8.091883274 7.937542276 7.881188506 7.991430877 8.010183527 8.348805852 8.356203981 8.475052814 148240964 CueO Metal Resistance Copper Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 9.494624209 9.423623252 9.545376025 8.871104808 8.829711647 8.595488864 8.330292849 8.500035835 8.506109828 8.773768158 8.634121077 9.028629421 162954327 alkK Organic Remediation Others Renibacterium salmoninarum ATCC 33209 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Renibacterium;species:Renibacterium salmoninarum; 8.274355979 8.313804682 7.362272824 7.310904683 7.645301807 7.515676536 7.084086378 8.192986227 7.538403964 7.536780457 7.834522429 167615931 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Burkholderia thailandensis Bt4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 9.746749474 9.755466911 9.515023075 9.380954034 9.509389081 9.522929804 10.00207152 9.18978587 9.728027886 9.349125448 9.206990476 9.150747302 2650152 CopA Metal Resistance Copper Archaeoglobus fulgidus DSM 4304 superkingdom:Archaea;phylum:Euryarchaeota;class:Archaeoglobi;order:Archaeoglobales;family:Archaeoglobaceae;genus:Archaeoglobus;species:Archaeoglobus fulgidus; 8.421876849 8.734753753 8.940016976 8.089979983 8.276278846 8.101385172 7.838158964 7.609896135 8.416937773 7.696518387 7.619841527 7.968148578 224602458 sigma_24 Stress Sigma factors Lutiella nitroferrum 2002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Lutiella;species:Lutiella nitroferrum; 8.261830249 8.331422941 8.315318869 8.626444249 8.624727366 8.456242563 8.644610011 8.712918232 8.748408348 171696146 pheA Organic Remediation Aromatics Other aromatics Podospora anserina superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 8.31440008 8.076446544 8.333314599 8.25146212 8.213833858 8.11863129 7.880454718 8.445842663 8.257055033 8.009954665 8.07661328 7.73064549 158111894 tfdA Organic Remediation Aromatics Chlorinated aromatics Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.294050579 8.533569705 8.499090782 8.011339997 8.068214038 8.112281272 8.355148964 7.984505946 7.934187805 8.046526231 8.050969682 164415622 mer Metal Resistance Mercury Sphingomonas sp. Seq21_b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.646014648 8.161821313 8.500786158 8.211274155 8.259603392 8.193381106 8.097674447 8.228039197 8.312771282 8.149612877 8.081563877 7.935178739 112462647 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.295389068 8.408764576 7.912850585 8.467453565 8.334494989 8.384363791 8.033602325 8.182463264 8.323979735 91693002 chnB Organic Remediation Other Hydrocarbons Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.132036603 8.070153722 7.124635087 7.504722059 257460378 ppk Phosphorus Phosphorus utilization Campylobacter gracilis RM3268 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter gracilis; 8.683493911 8.033220329 8.518545934 8.354128536 8.254606324 8.142573003 8.429006425 8.126821383 8.10401901 8.312109782 7.87174722 189915441 katE Stress Oxygen stress Actinobacillus pleuropneumoniae serovar 7 str. AP76 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus pleuropneumoniae; 8.080189357 7.9290114 7.943179267 7.67702669 7.692812612 8.060822581 7.613787135 7.770418941 7.62163985 163261563 pstB Stress Phosphate limitation Bordetella petrii 11.48612239 11.62890778 11.67459136 10.8491954 11.22452409 10.72934499 10.84514686 11.42969184 11.20326015 11.16375759 11.45716932 163811783 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 6.911382022 7.24794017 7.210497597 6.855341097 7.54896634 227823030 fnr Stress Oxygen stress Rhizobium sp. NGR234 8.16526122 8.089780109 7.875687895 8.002656092 7.959640435 7.894857271 8.204641656 8.226659433 8.951106007 7.865534067 8.045815917 148271556 phn Organic Remediation Herbicides related compound Clavibacter michiganensis subsp. michiganensis NCPPB 382 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 8.765761406 8.543398501 8.535214417 8.897968806 8.451667299 8.147717041 8.577289673 8.637700704 8.475748248 8.496615916 8.240756722 8.520282072 154162600 fnr Stress Oxygen stress Xanthobacter autotrophicus Py2 8.265885155 8.346879056 8.425898801 8.682526754 8.606988304 8.27008487 8.540174894 8.401653714 8.506149286 8.28651769 7.973427644 8.002237475 269144260 fnr Stress Oxygen stress Brevundimonas subvibrioides ATCC 15264 8.827262824 9.070148236 8.824901283 8.405393827 8.656292679 8.660722415 9.087993689 8.142413463 8.845876033 8.055161628 8.400468441 8.229251497 251854620 pcc Carbon cycling Carbon fixation Corynebacterium matruchotii ATCC 14266 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium matruchotii; 8.987304704 8.864998297 8.876045905 8.174066854 8.275508228 8.307946349 8.828992278 8.497377936 8.718362235 8.273753843 8.489014999 8.328284669 77964409 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.536927754 8.567639481 8.410435904 8.359632684 8.390941212 8.846360111 8.357668721 8.47374705 8.510087297 8.403433327 77019723 ArsC Metal Resistance Arsenic Rhodococcus erythropolis PR4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 10.55380114 10.58333973 10.43356631 10.66253399 10.49496726 10.54287426 10.83966793 10.68500271 10.28912479 10.68001009 10.67562759 10.74460839 121303255 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.636249463 8.599971082 8.621144777 8.228171087 8.414571496 8.422116801 8.387372057 8.340664853 8.527981829 8.54561304 8.723972494 8.490309164 38427002 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.28953451 9.221142584 9.225224246 8.982483789 9.063444955 8.970643551 8.764129449 9.247068227 8.838001677 9.194279702 9.060673555 9.092377785 148843592 mer Metal Resistance Mercury Planctomyces maris DSM 8797 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces maris; 8.280787365 7.971346279 8.429039099 7.717728262 7.392252316 7.699851503 7.822222436 7.158528637 7.916408843 7.618375488 7.715217273 7.600844802 213536769 exoglucanase Carbon cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 8.550666526 8.626692117 8.272306076 8.611006188 8.554520773 8.919507624 8.136301894 178468917 Tet Antibiotic resistance other Streptomyces griseus subsp. griseus NBRC 13350 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 9.181436626 8.846431806 9.050078875 8.58275615 8.525356582 8.53537289 8.673187261 8.359521853 8.842870804 8.504101577 8.574000774 8.591982362 62085674 gyrB other category gyrB Gordonia amarae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 8.063311744 8.232699177 8.184189991 7.251464158 7.230028182 7.69658507 7.297093871 7.023970573 7.918707457 7.06442758 6.935584752 259023138 pstA Stress Phosphate limitation Rhodobacter sp. SW2 8.718844976 8.852842581 9.043491956 7.74544402 7.39581929 7.899498291 7.637721902 7.124044953 8.138326566 7.860507269 8.107904451 8.000932758 68555062 CODH Carbon cycling Carbon fixation Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.265407942 8.330678092 7.902926697 7.971199002 8.062955011 8.301012333 7.627129744 8.030559223 7.545915618 7.561214521 7.637489673 218675983 hly virulence hemolysin Vibrio splendidus LGP32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 8.831088847 8.813405 9.149144735 8.861625347 8.950375521 8.851858242 8.594952016 9.244595932 8.855590411 9.174673481 8.752562516 8.875375204 117949582 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 8.512906909 8.511635472 8.718217346 8.238760773 8.21485306 7.972719235 7.968241733 8.042951961 8.107658604 8.186945521 7.822295312 8.184068733 120587318 nagI Organic Remediation Aromatics Aromatic carboxylic acid Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 10.5083424 10.36122925 10.58135946 10.63064539 10.77464017 10.44016186 10.43170636 10.79569787 10.51167518 10.48125877 10.56268272 10.81615949 91203235 groEL Stress Heat shock Candidatus Kuenenia stuttgartiensis superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;genus:Candidatus Kuenenia; 9.482137123 9.636735343 9.708871561 9.016200233 9.112789559 9.141586723 9.077660988 8.199707939 9.169682938 9.142566248 9.144591176 9.225571516 124266088 chnB Organic Remediation Other Hydrocarbons Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 8.425872685 8.322954135 8.449602439 7.496034985 7.589143914 7.669520308 8.033222333 7.262102634 7.747824934 7.321107845 7.580709635 116696010 fnr Stress Oxygen stress Ralstonia eutropha H16 8.196144667 8.529560254 8.486708301 8.219143102 8.35591188 8.219510837 8.690891366 8.725128724 8.465693667 8.172144109 8.078045079 149917477 phdCI Organic Remediation Aromatics Polycyclic aromatics Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 8.754964035 8.692860743 9.489615319 9.470486061 9.221539931 8.913455842 9.573014809 9.029620617 9.118702859 8.792871155 163761255 fnr Stress Oxygen stress Hoeflea phototrophica DFL-43 9.629349437 9.564908982 9.654042288 8.836345212 8.934039789 9.04223774 8.746616774 8.666356653 8.681987233 8.792139726 8.98132907 9.158749028 264675172 amyA Carbon cycling Carbon degradation Starch Caulobacter segnis ATCC 21756 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 10.04037505 9.899398364 9.848681782 9.426409295 9.347938998 9.146300218 9.256214704 9.278366967 9.485144941 9.432027919 9.407766638 9.547445706 218392812 glnA Stress Nitrogen limitation Thermotoga maritima 8.048660852 8.162539192 8.22832885 7.636239084 7.718974132 7.877119166 8.125148279 7.799323713 7.970685352 7.894780976 7.96283085 7.872471711 104774139 sigma_70 Stress Sigma factors Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus delbrueckii; 9.566710282 9.325336186 9.268430084 9.332356772 9.420070722 9.211987295 9.385138843 9.684957559 9.29390032 9.720033548 9.666938182 9.605901026 254439883 sigma_32 Stress Sigma factors Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 8.104600345 8.025704637 7.522032148 7.43103503 7.514423366 7.055841828 7.465824515 7.426375449 7.218313451 7.579718944 56697625 pimF Organic Remediation Aromatics Aromatic carboxylic acid Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 8.606866499 8.285118998 8.305018022 8.130386192 7.964790739 7.923729097 8.236489912 7.941071463 8.487159988 7.759473094 7.58836677 7.840401171 119715757 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 9.366810423 9.355828978 9.164323815 8.879651626 8.96407341 8.705951738 9.148910898 9.027037672 8.856000776 8.945073846 9.011049577 9.033867428 66866394 pilin virulence pilin Neisseria mucosa 8.587191961 8.345492166 8.625447773 9.065714962 8.835474097 8.462671184 8.787654538 8.83636082 8.646192427 8.718136735 8.903126782 8.229020962 159176446 BADH Organic Remediation Aromatics Other aromatics alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 7.358168723 7.219966176 7.708066887 6.97479058 7.120031449 7.522687278 7.262969913 7.231366343 219675075 exaA Organic Remediation Chlorinated solvents gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.615544842 8.665099122 8.422440339 8.350743121 8.724551469 8.689035212 8.583131816 9.027520657 8.655870281 8.830370271 8.77848146 8.773424881 167038646 fnr Stress Oxygen stress Thermoanaerobacter pseudethanolicus ATCC 33223 8.333746325 8.010782005 8.217734235 7.513157609 7.445830456 7.465415023 7.499499361 229380346 AceB Carbon cycling Carbon degradation others Oxalobacter formigenes OXCC13 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Oxalobacter;species:Oxalobacter formigenes; 8.459304044 8.090686534 6.923145537 7.147226432 6.882280054 7.43595695 6460527 ArsC Metal Resistance Arsenic Deinococcus radiodurans R1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 8.523076094 8.814946319 8.834695647 8.251500607 8.249093821 7.86328512 7.809746648 7.818894654 8.24023114 7.933149984 7.794181485 8.064398376 55229512 atzA Organic Remediation Herbicides related compound Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 7.12015284 6.78419476 7.196571404 47076737 narG Nitrogen Denitrification Geobacillus stearothermophilus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.400829987 8.241790525 8.809217716 8.497537006 8.513996407 8.488161444 8.153310048 8.783061542 8.58054377 8.658495064 8.738866324 8.542948807 256826579 hly virulence hemolysin Cryptobacterium curtum DSM 15641 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Cryptobacterium;species:Cryptobacterium curtum; 8.214147967 8.102114812 8.465903333 7.745553636 7.567413874 7.28290413 7.545749788 7.691851729 7.81538744 7.459756934 7.30051169 7.524635078 170654185 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 10.21082033 10.04902055 9.881554233 10.08177525 10.27013162 9.978758778 9.95163834 10.36624325 9.890774407 10.17542087 10.12690742 10.14639309 164414593 single_strand_annealing_protein Bacteria phage REPLICATION Phage PY100 order:Caudovirales;family:Myoviridae; 8.615426784 8.474806378 8.694678354 8.310229141 8.376108377 8.326705152 8.017024041 7.967862364 8.264491739 8.747560532 67543152 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia vietnamiensis G4 9.19313992 9.030527677 9.016701626 8.53797801 8.479900857 8.429775071 8.858548195 8.607793333 8.929063902 8.485411676 8.542080401 8.330012075 126236465 CDH Carbon cycling Carbon degradation Cellulose Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.869192456 8.580926072 8.917826809 8.467163847 8.4639233 9.095128718 8.945013081 8.703986777 8.716822167 8.653012305 8.661101028 220708160 nagI Organic Remediation Aromatics Aromatic carboxylic acid Geobacillus sp. Y412MC61 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.259009425 8.156442346 7.712190175 7.517595026 8.006537052 7.738796753 7.801615181 8.199102622 7.732225421 7.777880812 7.720731117 198248454 ABC_antibiotic_transporter Antibiotic resistance transporter Acidithiobacillus ferrooxidans ATCC 53993 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 8.600196222 8.325052467 8.610606196 7.908599472 7.954798704 8.092937613 8.154403572 8.084872357 8.33945176 7.63654423 7.868501392 7.933891571 89344130 pstC Stress Phosphate limitation Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 9.740463612 9.668394741 9.644073143 9.111689702 9.44026939 9.267973365 9.181200731 9.357432691 9.305405902 9.513409912 9.600195836 9.37246751 107027106 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Burkholderia cenocepacia AU 1054 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 8.995829054 9.198558117 9.240288361 8.953104021 8.740036814 8.469471037 8.730646559 8.717754196 8.633444878 8.682600484 8.545162242 8.680989595 86570438 Arylest Organic Remediation Aromatics Other aromatics Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.610548278 8.656980357 8.803608516 8.065877043 7.551415254 8.442440645 7.985667148 7.706169012 8.239276603 7.884470882 8.251922138 8.208071548 268611934 B_lactamase_C Antibiotic resistance Beta-lactamases Ruminococcus flavefaciens FD-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus flavefaciens; 8.19953488 7.998940166 8.303338818 7.345622881 7.17372366 7.42734815 7.011088345 7.279000075 83749278 nagL Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia solanacearum UW551 9.003519424 9.268272994 8.646384849 8.954299443 9.227803756 9.238798487 9.524337577 9.147096626 9.365510157 9.152982024 9.153648571 9.435881889 217415750 pulA Carbon cycling Carbon degradation Starch Bifidobacterium angulatum DSM 20098 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium angulatum; 8.772640628 8.357374502 8.626557601 8.187148205 7.897942232 7.977497105 7.642146925 8.047915097 8.19391309 8.132943763 7.888992187 8.041656048 152978844 iro virulence Actinobacillus succinogenes 130Z superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus succinogenes; 8.621128769 8.717350712 8.791316941 8.019424107 7.81709621 7.845863132 7.503481953 7.719241828 7.991812413 7.85369714 7.869441764 7.994009218 260089139 katE Stress Oxygen stress Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 8.200781639 7.96408933 8.381726855 8.465274165 8.427005317 8.159065314 8.221731581 8.571528821 8.440936967 8.312339181 7.946997625 8.329861665 153010978 gyrB other category gyrB Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 8.495824541 8.368004115 7.949598095 7.914745147 8.270223443 8.073545117 8.161713157 8.309325217 8.163747417 8.150134473 90336675 catechol_B Organic Remediation Aromatics Other aromatics Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 8.641611212 8.573596249 8.342099995 8.352479172 8.203480848 8.29841617 8.328379327 8.192626084 8.450557747 8.56404742 8.511377377 8.520162197 119456976 TerZ Metal Resistance Tellurium Lyngbya sp. PCC 8106 8.408270647 8.19436946 8.659771886 8.342951755 8.341688846 8.02797998 8.429445377 8.381979641 8.322445155 8.233057984 8.279590184 114338082 pstB Stress Phosphate limitation Syntrophomonas wolfei subsp. wolfei str. Goettingen 9.315281194 9.383159622 9.365687077 8.816486383 8.02319706 7.89151558 8.242648013 7.523311559 8.447214663 8.383149363 11066440 dsrB Sulphur sulfite reductase Desulfobulbus propionicus superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfobulbus; 7.692719964 7.286384421 7.421630276 7.239735809 125860849 Catechol Organic Remediation Aromatics Other aromatics Methanoculleus marisnigri JR1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanoculleus;species:Methanoculleus marisnigri; 8.623481418 8.569005979 7.659614474 7.860433321 8.037625375 8.503317454 7.430354815 8.258285368 7.702778958 7.783425836 8.060140727 54026672 TerZ Metal Resistance Tellurium Nocardia farcinica IFM 10152 8.713480546 9.245774832 9.099279066 9.051422955 9.305424773 9.1137428 9.049226256 9.469999452 8.697586165 9.244066322 9.076982851 9.112212095 77378747 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.566138123 8.55018108 8.860167138 8.496999365 8.385211985 8.342528502 8.46176545 8.64779273 8.644703994 8.605701569 8.358431238 8.5296766 193073104 fnr Stress Oxygen stress Sinorhizobium meliloti 1021 8.203072357 7.843906389 7.726568758 7.927509573 7.700382668 7.804231686 7.908995013 7.908544058 7.57441699 78357429 pstB Stress Phosphate limitation Desulfovibrio desulfuricans subsp. desulfuricans str. G20 7.387656052 7.509508173 7.469087452 7.201880805 7.099576631 7.692400777 7.285711473 6.971788955 7.323659669 94309418 pilin virulence pilin Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.777749425 8.889021998 8.833168154 8.224908027 8.325202119 8.3513256 8.41217709 7.939991447 8.474608027 8.084453781 8.086982914 8.360547492 134081445 glnA Stress Nitrogen limitation Aspergillus niger 8.485975939 8.452033972 8.621033242 8.392959173 8.388638941 8.235569827 8.298113705 8.265703949 8.229879521 8.298753126 8.22451856 7.77106309 92117693 ahpC Stress Oxygen stress Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 7.995171159 7.959355697 7.571088013 7.525463585 7.994035693 7.922639028 7.93847862 8.266821182 7.683291579 8.079602779 7.851601783 261282381 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.98107294 8.321722617 8.269555905 7.673388355 7.644390692 7.696359082 8.08310012 7.945154039 7.917832969 7.986959897 7.793566836 8.070286829 255335114 obgE Stress Radiation stress Hyphomicrobium denitrificans ATCC 51888 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 9.462981921 9.202232918 9.136515444 9.131074602 9.150289838 8.994020775 9.089960496 9.125438619 9.012775866 9.199074782 9.198907659 9.259226139 206677631 rd Organic Remediation Chlorinated solvents Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.368322565 8.256349399 8.365595667 8.611126257 8.307742717 7.915382723 8.240391113 8.370283137 8.379119451 8.31223389 8.27874022 8.130541061 116249469 fnr Stress Oxygen stress Rhizobium leguminosarum bv. viciae 3841 8.39890337 8.338407508 8.382689928 8.284178349 8.110942735 8.007058581 8.126176895 8.399681131 8.37273197 8.323304641 7.877101913 8.068054702 83575287 phn Organic Remediation Herbicides related compound Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 7.994145968 7.947625714 7.903741097 8.025074102 8.088108886 7.91992191 8.123934992 8.020816501 8.064202033 8.064089106 8.237387503 13249519 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.692426342 8.529973919 8.624240334 8.023344289 8.11742725 7.887632834 8.498270278 8.142558989 8.533638778 8.034046651 8.121139013 8.070314977 281327589 iro virulence Burkholderia sp. CCGE1001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 9.159880538 8.984672574 9.171660639 9.195015143 9.126344594 8.989276509 8.997650134 9.315749397 9.065340153 9.202219541 9.264481834 9.034748279 94972021 ZntA Metal Resistance Zinc Deinococcus geothermalis DSM 11300 9.785507624 9.665561574 9.526264462 9.711324832 9.765417085 9.646911808 9.947943344 9.779129344 9.639411943 9.467543889 9.270605074 148554700 tftH Organic Remediation Aromatics Chlorinated aromatics Sphingomonas wittichii RW1 9.50156387 9.571732013 9.482165358 8.94796564 8.66564799 8.623534809 8.985757428 8.982053492 9.027999291 8.857322485 9.041985926 83647475 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 8.646410212 8.304687734 8.543436532 8.152855905 8.109340181 8.053514046 7.959721402 8.218752722 8.135465781 8.205676333 7.99389971 8.150809843 119857783 ArsC Metal Resistance Arsenic Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.443523833 7.457510356 7.432465402 7.380300075 7.875739323 7.43706845 7.526837178 152028228 TerC Metal Resistance Tellurium Anaeromyxobacter sp. Fw109-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 7.954979351 7.481774695 7.341582046 7.526183005 7.399109392 8.096721917 7.359374467 7.338413698 6.998424227 261281857 obgE Stress Radiation stress Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 10.11086023 10.06783755 10.13122499 9.613698787 9.636015549 9.602617875 9.442309567 9.739268216 9.603372272 9.711076245 9.867072339 9.933594219 145232502 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8.12577346 8.220520024 8.449478862 7.631808728 7.527293906 8.140136459 8.138314448 7.849570471 7.861320249 7.974373956 7.755022853 71906198 pimF Organic Remediation Aromatics Aromatic carboxylic acid Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 7.47028277 7.504790095 7.019525925 7.483610217 7.587052936 7.697032561 7.385662062 7.62498616 189206069 exoglucanase Carbon cycling Carbon degradation Cellulose Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7.891843624 8.031376881 7.041539285 7.816442358 7.935255381 7.282527584 7.739990425 7.804602743 7.952812778 7.93301121 7.950226138 254381916 katE Stress Oxygen stress Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.435086141 8.613420864 8.31648734 8.343484832 8.149438122 8.792535648 8.564603235 9.056327414 8.320793806 8.790008829 8.849051566 8.196858054 34483866 dmsA Organic Remediation Others Wolinella succinogenes superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Wolinella; 8.55008606 8.63965803 8.794354018 8.023501683 8.324775765 8.322349443 8.519276264 7.379419492 8.657062525 7.876959594 7.986614119 70988960 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 8.720141307 8.420306347 8.581279621 8.230068613 8.045133016 8.443923423 8.567366308 8.352233905 8.394597879 8.252206425 8.104390321 163738738 B_lactamase_A Antibiotic resistance Beta-lactamases Phaeobacter gallaeciensis BS107 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 8.228318702 8.284394409 8.601601929 8.305135666 8.214697175 8.129732239 8.038175727 8.467000184 8.101673158 8.265863721 8.191521957 8.10233399 115373243 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 9.181452877 9.415348959 9.420695156 9.490517127 9.673511082 9.702063033 9.274619079 9.688305369 9.14981222 9.73582409 9.630040182 9.066077336 119959151 TerC Metal Resistance Tellurium Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.88553874 8.894459971 8.311656057 8.662247495 8.577841096 8.659330432 9.130521424 8.657643729 8.659537826 8.349781043 8.460248038 8.292757391 222353926 APS_AprA Sulphur adenylylsulfate reductase uncultured bacterium superkingdom:Bacteria; 9.461803715 9.37767061 9.191758015 9.70483738 9.641998991 9.326365621 9.529544958 9.573596802 9.370005614 9.532674136 9.47042421 9.014768851 213876510 pilin virulence pilin Vibrio vulnificus 8.814899193 8.708601254 8.604478823 8.453845373 8.48223263 8.030197708 8.223862636 8.6389544 8.5044256 8.631392858 8.389502487 8.341760658 209401604 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.979746653 8.97757314 8.799899065 9.04425398 8.857367168 9.056682301 9.246149329 9.150109783 9.111125517 8.941338717 8.992499793 110823938 tphA Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus jostii RHA1 8.523166331 8.537761725 8.587472713 8.127638263 8.297930361 8.419703253 9.08088448 7.954577509 8.857735359 8.116504446 7.931817151 7.999263578 114705586 Arylest Organic Remediation Aromatics Other aromatics Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 8.167750284 7.808756522 8.181748746 7.99078732 7.813710195 7.157216638 7.821560835 7.656372412 7.714343791 7.734175967 7.719023861 62085776 fimbriae virulence fimbriae Escherichia coli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 9.099358499 8.855008971 9.308643158 8.484985314 8.185120458 8.157528767 7.979223443 7.895087452 8.172035268 8.053538201 8.553697788 214031574 AceB Carbon cycling Carbon degradation others Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8.197363009 8.35649415 8.034695772 8.024618379 7.925123107 7.433538915 8.195517237 7.89879486 7.876281318 8.06559682 8.274402498 60417318 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.590444763 8.609432202 8.451111836 8.475265098 8.418251563 8.396396805 8.6986065 8.616533341 8.569486895 8.596528198 8.65044555 8.399288062 229875748 ahpC Stress Oxygen stress Sphaerobacter thermophilus DSM 20745 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 8.424704231 8.714964021 8.455361723 6.966753743 8.139047359 8.722854485 8.392501366 8.337963493 8.065674033 8.045956014 7.828463538 221179274 proV Stress Osmotic stress Burkholderia multivorans CGD2M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 8.399312066 8.309215025 8.651922675 7.842462868 7.837142751 8.451689709 8.292411717 8.55820708 77979717 dmsA Organic Remediation Others Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 8.105089243 8.021687119 8.297554941 7.97323874 8.033659144 8.092860929 7.844906872 8.059070121 8.253230987 8.02419777 8.101443508 8.143203312 113905132 ZntA Metal Resistance Zinc Salinispora tropica CNB-440 8.64482006 8.60829581 8.598610279 8.297410726 8.286520714 8.033735002 8.18525172 8.458542216 8.334995057 8.286337594 8.11063492 8.57441653 127514746 CopA Metal Resistance Copper Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 8.796707278 8.769888033 8.996341699 8.360977844 8.421148233 8.506750593 8.097380408 7.994241372 8.410546873 8.33825474 8.311896676 8.562131044 78065508 SMR_antibiotics Antibiotic resistance transporter Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.037511023 8.110298193 8.465390887 8.37621888 8.485051086 8.121781699 8.13064774 8.372985757 8.345270002 8.467290504 8.367492614 8.082133748 182415001 sigma_24 Stress Sigma factors Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 8.63270345 8.707406514 8.688518356 8.38480929 8.142933609 8.514094458 8.440524396 8.259835233 8.498724327 8.190807043 8.377755131 8.590939257 68346962 katE Stress Oxygen stress Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.646354715 9.002247387 9.262817779 8.514513343 8.502190621 8.543037181 8.883215545 8.714042341 8.984133038 8.578420951 8.549256645 8.703476674 256821502 sigma_24 Stress Sigma factors Kangiella koreensis DSM 16069 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Kangiella;species:Kangiella koreensis; 7.35436923 7.29920941 7.50055101 7.038798337 6.821774466 7.399759855 116072877 sigma_70 Stress Sigma factors Synechococcus sp. BL107 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.556688132 8.451521838 8.517608485 8.427087556 8.389282491 8.439408579 8.573247221 8.646050173 8.573754446 8.41740838 8.435578916 8.459090467 145016007 nagG Organic Remediation Aromatics Aromatic carboxylic acid Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 7.967457371 7.819198719 7.445879644 7.683132429 7.469530156 7.155730765 7.375927253 7.554548168 7.419832676 7.298217738 7.534130186 221215639 vanA Carbon cycling Carbon degradation Others Burkholderia multivorans CGD1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 7.918948531 7.859936217 8.320030262 7.378770199 7.417586902 7.572423262 7.137058131 7.390433843 7.729282984 7.654936308 7.594706767 7.507471252 111619185 ZntA Metal Resistance Zinc Acidovorax avenae subsp. citrulli AAC00-1 8.716674174 8.282533652 8.62003634 8.180556487 8.127474227 8.149359035 7.848311419 8.001767024 8.040191757 8.005166826 7.764503572 8.370122621 193084263 pimF Organic Remediation Aromatics Aromatic carboxylic acid uncultured marine group III euryarchaeote KM3-28-E8 superkingdom:Archaea;phylum:Euryarchaeota; 8.629229583 8.287935668 8.915044929 8.517662335 8.213943573 8.1483383 8.911154836 8.471688612 8.713379384 8.50513327 8.62114337 91690320 iro virulence Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.726617141 8.748814091 8.603192797 8.124919185 8.312726651 8.490192071 8.828234301 8.324345708 8.989576776 8.230174341 8.22498363 8.388893578 258511883 pstS Stress Phosphate limitation Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 8.725104731 8.756076812 8.732093911 7.938470873 8.61990199 8.779229053 7.984082528 8.702854125 8.091244369 8.387594262 7.87534491 213952509 alkK Organic Remediation Others Corynebacterium amycolatum SK46 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium amycolatum; 8.262733265 8.049304089 8.457225674 7.677248248 7.817524575 7.917508925 7.878756433 6.702500755 8.223757971 7.412523525 7.279566787 7.471682732 212680082 dmsA Organic Remediation Others Providencia rustigianii DSM 4541 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 7.483522693 7.45771533 6.969039792 7.212628939 7.756958724 7.256711231 7.411756798 45188005 phenol_oxidase Carbon cycling Carbon degradation Lignin Ashbya gossypii ATCC 10895 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Eremothecium;species:Eremothecium gossypii; 8.96546616 8.83578768 8.616322771 8.860481594 8.492920693 8.043259171 8.586008949 8.477014556 8.669700962 8.64189807 8.690795452 8.110845402 145222379 chnB Organic Remediation Other Hydrocarbons Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.899496503 8.50595294 8.562491452 8.218751664 8.586618802 8.67426374 8.386941911 8.551728592 8.405417519 8.775062107 8.328211418 109455988 pstB Stress Phosphate limitation Roseobacter denitrificans OCh 114 9.51051635 9.401294713 9.115672553 8.98148611 8.71827976 8.793547247 8.955448256 8.780936768 9.015773948 8.83582578 9.065875658 8.877492247 62004678 endochitinase Carbon cycling Carbon degradation Chitin Trichosporon cutaneum superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Tremellomycetes;order:Tremellales;genus:Trichosporon; 8.766007699 8.603014181 9.128111735 9.252084566 9.003306067 8.753720565 9.416429704 9.214982895 8.99035927 9.062361932 87281169 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.580996298 8.304311637 8.062841755 8.16466532 8.020302976 8.301941181 7.885770083 8.418760516 7.923778985 8.123226406 8.431453641 8.072321263 256685286 ara Carbon cycling Carbon degradation Hemicellulose Jonesia denitrificans DSM 20603 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 8.887476125 8.877191897 8.811113266 8.418863292 8.177264287 8.477617201 8.163147602 8.162808495 8.105358051 8.21122669 8.508462951 114340168 ZntA Metal Resistance Zinc Maricaulis maris MCS10 8.650250223 8.632747752 8.621861991 8.226222293 8.21635924 8.309225274 8.442800449 8.273192578 8.523801224 8.433857138 8.538658026 8.515048384 49237794 cap virulence capsule Bartonella henselae str. Houston-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella henselae; 8.781360096 8.300542742 8.885519741 8.249779441 8.2963291 8.164217644 8.105733438 7.996221162 8.435175621 8.281399713 8.138096581 8.32368486 261500176 amoA Nitrogen Nitrification superkingdom:Bacteria; 7.615642397 7.731997914 8.235961884 8.478842506 8.414835666 8.360638138 8.439824717 8.345637469 8.596031209 196480093 AceB Carbon cycling Carbon degradation others Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 9.035274903 9.053685308 9.206035076 8.996730817 8.967510396 9.130997527 9.2985528 9.276794922 9.411924989 8.906676698 8.858430459 8.966215725 149939131 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 8.76326436 8.384843196 8.675259644 8.021295206 7.918623121 8.195288505 8.159367814 7.854494259 8.569152272 8.01167458 8.038782777 8.081166529 7210994 TerZ Metal Resistance Tellurium Streptomyces coelicolor A3(2) 9.576970979 9.537869796 9.605219475 9.412659168 9.352267723 9.128409227 9.030184622 9.313108748 9.043547582 9.49507392 9.379095375 9.546854521 116255227 atzA Organic Remediation Herbicides related compound Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.250757505 8.182519764 7.350782182 7.516871253 7.319249591 7.102788019 7.598824775 7.968128668 7.731344755 7.586291517 7.609675896 86138370 oxyR Stress Oxygen stress Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.237759913 8.867010704 7.723289887 7.496046521 7.659702322 7.080438004 6.682074809 7.866660774 7.475885016 7.335461848 7.780263789 83835800 Catechol Organic Remediation Aromatics Other aromatics Roseovarius nubinhibens ISM 10.34687191 10.16008221 9.406513015 9.693064232 9.852422189 4895143 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces lavendulae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.295914168 8.275735488 8.689559116 8.528985959 8.590295133 8.124565391 8.712659111 8.324131667 8.430344153 8.44713544 8.240158644 36785221 nmoA Organic Remediation Aromatics Nitoaromatics Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 9.056236263 9.00678789 9.078399541 8.409359866 8.23470405 8.46676756 8.269634707 8.194049288 8.1252737 8.275624526 8.347856728 8.520399139 38524456 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus opacus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.619066529 8.589765302 8.438601986 7.918528713 8.066548851 8.290277065 8.418572204 8.147464944 8.722645573 8.022641891 8.17298117 8.04228678 111225869 pstC Stress Phosphate limitation Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 9.341126595 9.072008259 9.254683146 8.666637135 8.546716973 8.58256354 8.577947663 8.450553841 8.598322106 8.76635295 8.714629778 34498442 fnr Stress Oxygen stress Chromobacterium violaceum ATCC 12472 8.899394146 8.597816702 8.64806534 8.703562075 8.759027228 8.555858441 8.726794721 8.86631352 8.539971342 8.710317647 8.502663957 8.418388475 24981380 CadA Metal Resistance Cadmium Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 9.460584182 9.301117258 9.40402293 8.736219144 8.633381073 8.820764353 8.68173155 8.604661662 8.542683899 8.517757235 8.427591215 8.969898692 120593543 sox Sulphur Sulphur oxidation Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 9.02690616 8.757151036 8.897536153 8.860425439 8.472937154 8.126174107 8.606267405 8.867143994 8.517506621 8.522378646 8.466904236 8.154716805 108762496 SMR_antibiotics Antibiotic resistance transporter Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 8.427229917 8.362727092 8.270907607 8.084117285 8.060738687 8.214897044 8.335924925 8.198422231 8.398859386 8.007577505 8.312784318 8.18234506 189354034 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia multivorans ATCC 17616 8.469765287 8.320522474 8.698160915 8.696749676 8.684773261 8.569339802 8.616878748 8.553906026 8.112390883 8.403200596 8.082348278 88855271 iro virulence marine actinobacterium PHSC20C1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 9.137272095 9.337812258 9.402383547 8.797652826 8.583462973 8.792385498 8.554807723 8.712387018 8.633311884 8.994882805 8.781474084 8.922331451 77962137 ZntA Metal Resistance Zinc Yersinia mollaretii ATCC 43969 9.00998934 9.020174749 8.408587743 8.078445874 8.084846914 3059181 bphC Organic Remediation Aromatics Polycyclic aromatics Rhodococcus erythropolis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.627138009 8.645083123 8.37627103 8.372604581 8.401013805 8.344984613 8.861351965 8.779919837 8.337399546 8.458735142 8.793273087 8.498094738 953231 catechol_B Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 8.838966275 8.789676685 8.694187797 8.686433222 8.474592891 8.392620557 8.495714046 8.761640681 8.709677928 9.068581747 8.769063799 8.852670992 169002386 ara Carbon cycling Carbon degradation Hemicellulose Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 8.300364335 8.129063708 7.85830697 8.074996417 7.837629985 7.79412881 7.841726316 7.848841781 7.78734356 46392598 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 8.671183325 8.420845896 8.557686339 7.860135494 7.838061335 7.591029611 7.378447452 7.832218458 7.486369303 8.166546597 238787193 SMR_antibiotics Antibiotic resistance transporter Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 9.252415033 9.319876835 9.537446314 8.785818422 8.900521795 8.87646787 8.69377326 8.637624882 8.741487772 8.770754825 8.800996551 8.993047679 126639413 katE Stress Oxygen stress Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 8.573800013 8.085861605 8.423890346 8.021714767 8.162528637 8.365108755 7.716362683 7.915377569 8.188379927 7.821403981 7.82344937 8.15272719 89352627 sox Sulphur Sulphur oxidation Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.192537979 8.167029174 8.252395375 8.050125237 8.41681429 8.500374557 8.045473712 8.106321651 8.073018578 110595373 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 8.322212346 8.126346931 8.001579224 7.909646215 7.71411064 7.699796346 8.088830186 7.956280315 8.24197914 8.132976043 7.926182553 187479212 ophC Organic Remediation Aromatics Aromatic carboxylic acid Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 8.018777097 7.88961947 7.382361924 7.458560244 7.854772767 7.670296528 7.605340146 7.614492589 7.636311059 7.790415014 145222255 pstA Stress Phosphate limitation Mycobacterium gilvum PYR-GCK 9.656358215 9.712511278 9.433642344 9.035013603 9.317638697 9.799047442 9.492463028 9.763127739 9.37463836 9.282112974 9.171078815 85086358 Catechol Organic Remediation Aromatics Other aromatics Neurospora crassa OR74A 8.792747157 8.889480754 8.695268811 8.55524749 8.719523354 8.561010946 8.240932104 8.869907615 8.446459058 8.627157262 8.67995381 9.041283707 146295090 gyrB other category gyrB Caldicellulosiruptor saccharolyticus DSM 8903 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Caldicellulosiruptor;species:Caldicellulosiruptor saccharolyticus; 8.601067834 8.48528976 8.818855037 7.95554958 7.99150987 6.993696842 6.99482564 7.803966765 7.835470052 7.98315822 7.818097108 157011532 APS_AprA Sulphur adenylylsulfate reductase uncultured bacterium 8.443824738 8.220124187 7.795306215 7.633820293 7.581408735 7.601276038 7.579415887 7.750191664 7.600129934 7.63226756 7.839752217 83943665 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 8.834308213 8.70533185 8.92757332 8.879016843 8.756723057 8.570259189 8.268169205 8.783354645 8.562481342 8.758660396 8.737992342 8.62415644 23011557 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 8.165799918 8.315161797 8.376793954 8.23204208 8.027072535 8.498086192 8.479388606 8.169585441 8.524689622 8.359320233 8.186715702 187920224 MFS_antibiotic Antibiotic resistance transporter Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8.657910232 8.708835586 8.287278042 8.944199857 8.692803285 8.266688044 8.744310983 8.784670697 8.836254323 8.510834032 8.414035436 8.290822969 94499305 glnA Stress Nitrogen limitation Oceanobacter sp. RED65 8.033254322 8.081214472 7.459976319 7.178779261 7.060185682 7.127125024 7.187484706 7.260662995 7.214011926 182382462 narG Nitrogen Denitrification uncultured bacterium 8.421158629 8.326762277 8.820507094 7.880479669 7.727332316 7.989389029 7.87363048 7.535123846 8.463503606 7.705495856 8.028431729 7.824868175 168700089 sigma_24 Stress Sigma factors Gemmata obscuriglobus UQM 2246 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata;species:Gemmata obscuriglobus; 9.520294692 9.523425258 9.647114582 9.107402663 8.981910612 9.121400438 9.70299137 9.408920871 9.912988491 9.22515071 9.238065005 9.22802519 115500944 gyrB other category gyrB Azorhizophilus paspali superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azorhizophilus; 8.052752137 8.138626234 8.217745327 7.986151084 7.853558939 7.48862216 7.7632676 8.081233249 8.403952879 8.295953547 8.068978274 8.161933906 256825489 sigma_70 Stress Sigma factors Kytococcus sedentarius DSM 20547 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermacoccaceae;genus:Kytococcus;species:Kytococcus sedentarius; 8.847650561 9.038783327 8.795275845 8.710342969 8.936816321 8.563098779 9.079474259 8.752088518 9.088018136 8.509062673 8.459674432 226424956 phenol_oxidase Carbon cycling Carbon degradation Lignin Trametes sp. C30 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 8.085209461 8.517353471 8.734322641 8.671387641 8.405477898 8.897655862 8.777613019 8.389768616 8.666330166 8.54649325 8.315022847 146410775 merP Metal Resistance Mercury Bradyrhizobium sp. BTAi1 9.331352658 9.133722975 9.31613321 9.098752566 8.926469398 8.811454775 8.733034491 8.914916159 8.794358756 8.795856719 8.963153267 8.842221884 114050057 vanA Carbon cycling Carbon degradation Others Streptomyces ambofaciens superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 10.90439468 10.95360533 11.07316039 10.77044009 10.78139574 10.66165639 10.85558226 10.81531911 11.07933676 11.19811739 11.09287414 10.98154228 281328431 sigma_24 Stress Sigma factors Burkholderia sp. CCGE1001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 9.115916762 9.495509029 9.30968567 8.349528077 8.258768784 9.278586649 9.314183436 8.947657369 9.102725614 8.780277065 8.89635686 9.247809862 254522217 iro virulence Stenotrophomonas sp. SKA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 8.412049276 8.791152237 8.538627668 8.799867652 9.122461054 9.042958365 9.175839252 9.012565272 9.269806082 9.151354429 9.005806057 209966627 TerC Metal Resistance Tellurium Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 8.291906622 8.931034161 8.419597599 8.138366013 8.167730214 8.735074882 8.892471412 8.610982812 8.752271123 8.653654585 8.804241673 8.786317049 118424524 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.368771456 8.631904707 8.569992442 8.477468578 8.633296307 8.540554235 8.375385035 8.743250306 8.46636901 8.779100436 8.834403894 8.777675842 162448868 bphD Organic Remediation Aromatics Polycyclic aromatics Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 9.200454807 9.255990413 9.294638233 8.827789387 8.795316154 8.754590305 8.694581293 8.779871438 8.554094004 8.849021167 8.875727256 8.87935574 160361506 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.747748549 8.380282287 8.953572205 8.007620763 7.95976528 7.880469463 7.80256822 7.538112239 8.338767404 8.063358335 7.739912321 8.267477195 13476103 proV Stress Osmotic stress Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 9.47264031 9.335540517 9.338446724 9.457985677 9.14332088 9.188555536 8.880061699 9.313150246 8.783269492 9.164577144 9.383925913 9.176813794 148260501 AceA Carbon cycling Carbon degradation others Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 8.508520271 8.001048114 8.225264971 8.011252579 7.925609309 7.841597173 8.095386199 7.935890969 7.971644157 7.964963077 8.029788428 193935116 TerC Metal Resistance Tellurium Neisseria gonorrhoeae NCCP11945 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria gonorrhoeae; 7.610709026 7.377934653 7.561471303 7.593376944 7.794188836 7.354340753 7.52698694 7.305426814 145217419 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 9.086152988 9.132701197 9.16881406 8.293620006 7.241760983 8.354645136 8.028493099 7.746435465 8.23484978 7.992234699 8.438165497 190014313 cnrC Metal Resistance "Cobalt,Nickel" Stenotrophomonas maltophilia K279a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 9.261450786 9.656395268 9.277044619 8.984535071 9.104470886 9.495289925 9.936453787 9.218337438 9.693949722 9.038306006 9.236050037 9.091966122 238798713 ppx Phosphorus Phosphorus utilization Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 9.545059986 9.373030261 9.588918727 9.118146795 8.841608384 8.804767673 8.891058155 8.825107815 8.87491517 9.041174524 8.869513604 8.987491945 157369292 nplT Carbon cycling Carbon degradation Starch Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 8.466348503 8.342752804 8.543460652 8.311501403 8.095765255 8.213277681 8.053937296 7.873755132 83749598 cbdA Organic Remediation Aromatics Chlorinated aromatics Ralstonia solanacearum UW551 8.697746426 8.846110928 9.001020751 8.403197544 8.347943167 8.152963476 8.184400546 8.242888189 8.38399836 8.280663386 8.267487746 8.258575493 227096796 sigma_70 Stress Sigma factors Geodermatophilus obscurus DSM 43160 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Geodermatophilus;species:Geodermatophilus obscurus; 8.311223082 8.338827531 8.315740933 8.528108115 8.292993225 8.333590236 8.427501286 8.199801771 8.348945107 8.053306592 8.002697266 7.786123344 170145021 type_III_secretion virulence secretion Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 9.98479604 9.979282989 9.884095454 10.42888559 10.42169031 10.31827297 9.904870515 10.45037706 9.962585545 10.32074366 10.218532 10.19275071 88701941 pilin virulence pilin Congregibacter litoralis KT71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 8.27197765 8.572919105 7.838418594 7.809419382 8.45822932 8.078924877 8.625295121 7.850105138 7.604948537 7.697752745 119671621 pilin virulence pilin Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8.395288725 8.214072508 8.23734014 8.571042445 8.431311999 8.331898158 8.31967231 8.131248736 7.898235304 7.706076966 8.202068059 7.859706058 268309633 fnr Stress Oxygen stress Thermomonospora curvata DSM 43183 7.904633392 7.736352477 7.825875644 7.291590587 7.401411895 7.76027593 7.616928516 7.746433954 7.629292481 47779018 endolysin_transglycosylase Bacteria phage LYSIS Burkholderia cepacia complex phage BcepC6B order:Caudovirales;family:Podoviridae;genus:Bpp-1-like viruses; 8.479569096 8.130930827 8.31777715 7.61256216 7.691521644 8.03861158 7.773774849 8.034277744 7.568308598 7.321269739 7.622084096 163854556 phtA Organic Remediation Aromatics Aromatic carboxylic acid Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 8.435249023 8.635290675 8.429732572 8.811963846 8.748258153 8.806772659 8.672383398 9.219773894 8.225537826 9.026032874 8.9731564 8.681631004 4160334 limEH Carbon cycling Carbon degradation Others Rhodococcus erythropolis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.063038192 8.287068545 8.140576582 8.001805409 8.364782768 8.352390505 8.026925466 8.584740247 8.058992972 8.562611613 8.529995567 8.479141281 56478367 CopA Metal Resistance Copper Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 8.76630932 8.441740808 8.887999512 8.1398756 8.06078092 8.044447137 8.034106941 8.058922123 8.128453126 7.812049726 7.663406689 8.171088391 255264598 pcc Carbon cycling Carbon fixation Thalassiobium sp. R2A62 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Thalassobium; 9.394829614 9.388836273 9.554665028 9.323798229 9.195701136 9.076633975 9.238945104 9.825088639 9.241090486 9.425193974 9.266075282 9.579933725 238060499 sigma_24 Stress Sigma factors Micromonospora sp. ATCC 39149 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 8.949867835 8.476109637 8.580136976 8.538356494 8.371891469 8.187689573 8.455960303 8.495542708 8.370035989 8.387722959 8.20655616 8.265273027 206576466 mhpC Organic Remediation Aromatics Aromatic carboxylic acid Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 8.672630789 8.490205934 8.562550497 7.922194008 7.764647186 7.889498953 7.800445653 7.712030332 7.986528156 7.582947285 7.741849363 7.959076222 34422115 FTHFS Carbon cycling Acetogenesis Treponema sp. ZAS-2 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema; 8.32485712 8.382047277 8.516445111 8.906778051 8.693238578 8.221892303 8.259802846 8.883077507 8.606221141 8.627806725 8.368802176 8.565604656 18157440 gyrB other category gyrB Rhodobacter blasticus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 7.223752928 7.257177972 7.207377189 7.117803966 7.766942287 7.134484724 7.088547688 7.407933452 220906364 ahpC Stress Oxygen stress Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.183063337 8.185639581 7.905914868 7.955416724 7.740674769 7.451357536 7.810300433 7.932188897 7.751592951 7.731474842 7.616235368 217329957 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.653992442 9.175147383 9.352521101 8.836624157 8.796263179 8.713864121 8.72834455 8.830358538 8.500128015 8.978869352 9.107330786 9.07738968 117986822 PobA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 8.722696811 8.723795639 8.780002093 8.863149535 8.699917433 8.638474064 108765839 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 9.230224582 9.073775738 8.935189515 8.511575202 8.477591253 8.687275312 8.785042324 8.45012428 8.974345795 8.657640253 8.773826757 8.535819132 148474732 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 8.104898513 8.082720901 7.669967984 7.55746859 7.623327714 7.021571715 6.944069687 7.858415501 7.1755879 7.501109797 118671163 pmdAB Organic Remediation Aromatics Others Delftia acidovorans SPH-1 9.627233703 9.467460043 9.412927812 8.806565576 8.874301312 9.080484937 9.539499021 8.790510804 9.255408088 9.023249814 9.499937516 9.056584861 84695733 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 9.073413817 8.796838654 8.948048828 8.885063592 8.737550987 8.4833572 8.623668297 9.025097543 8.678174925 9.09276699 8.675280214 9.096426871 269920284 Ni_Fe_hydrogenase Energy process Energy process Dehalococcoides sp. GT superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 8.467801225 8.346045535 8.57736387 8.31371088 8.10539521 7.724154365 8.453380267 8.383631164 8.378852622 7.953570232 7.887697298 239608565 ABC_antibiotic_transporter Antibiotic resistance transporter Ajellomyces dermatitidis ER-3 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 7.499976617 7.408800342 7.357438693 6.730158577 7.119803051 7.535452704 7.033916206 7.047613817 7.27263702 55978128 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.331048869 8.244935798 8.441920643 7.940189996 7.956626549 7.842806683 7.405070387 7.524667677 7.854863778 7.483758785 7.420030387 7.949237364 241462205 cap virulence capsule Allochromatium vinosum DSM 180 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 8.500170755 8.467909708 8.39281166 8.258323894 8.513518579 8.432849396 8.650834125 8.560944585 224610871 hrcA Stress Heat shock Thioalkalivibrio sp. K90mix superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 9.509471914 9.544552741 9.621827432 9.634858803 9.730228952 9.633737946 9.652380157 9.994506976 9.652081492 9.896355422 9.605734798 9.646001255 84498274 glnA Stress Nitrogen limitation Janibacter sp. HTCC2649 9.019599646 8.859553224 9.060530445 8.546100414 8.407743586 8.222369689 8.261751773 8.083292325 8.052089181 8.234767624 8.24976123 8.313087277 28270020 amyA Carbon cycling Carbon degradation Starch Lactobacillus plantarum WCFS1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus plantarum; 8.941354127 8.749944334 8.90903641 8.497269449 8.447736892 8.473043214 8.019965294 8.002782362 8.11756394 7.887568954 8.483881563 220911162 ara Carbon cycling Carbon degradation Hemicellulose Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 8.798675493 8.162717409 8.520556196 8.261716631 7.975502926 7.852836897 7.925031967 8.0880231 7.826380179 7.873668882 7.852426975 9622538 bbs Organic Remediation Aromatics BTEX and related aromatics Thauera aromatica superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 9.325318259 9.424327195 9.35874179 9.441313283 9.583353667 9.210859176 9.503446803 9.886345448 9.482656338 9.55845767 9.421524618 9.567485954 83815437 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Salinibacter ruber DSM 13855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 8.616363892 8.829226717 8.515941398 8.269079682 8.930379495 8.703312901 8.940662178 8.782913415 8.907706018 8.985660762 8.82155554 219863867 glnA Stress Nitrogen limitation Cyanothece sp. PCC 7425 8.707251814 8.004449921 8.673102052 8.518869087 8.611569104 8.440850004 8.443573383 8.032951637 8.341557898 8.197320751 8.013943459 58001588 pstA Stress Phosphate limitation Gluconobacter oxydans 621H 8.611676737 8.777959856 8.491087152 8.653886371 8.627526831 8.521046312 8.695870673 8.823063485 8.802949643 8.530283941 8.334031148 8.531865371 66047544 tfdA Organic Remediation Aromatics Chlorinated aromatics Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 8.213356548 7.840705617 7.557862189 7.274135757 7.31803227 7.135549188 7.228027884 7.882338389 7.412674554 7.310163641 71915513 AceA Carbon cycling Carbon degradation others Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 8.559681604 8.904000486 8.949490093 8.829625311 9.025861032 8.807919818 8.965991624 9.171921463 8.987993173 9.172913712 8.83123096 8.947985772 38200993 pcc Carbon cycling Carbon fixation Corynebacterium diphtheriae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium; 8.974472826 8.68820775 8.805823832 8.441631152 8.958192387 8.601917933 9.022925252 8.690090812 8.571929095 8.751801501 8.801859041 8.391680264 220918189 nrfA Nitrogen Dissimilatory N reduction Anaeromyxobacter dehalogenans 2CP-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 8.675350905 8.65071546 8.003073543 8.22517875 8.084008281 8.02006921 8.249027829 8.379660096 8.299698383 8.012037852 8.294448699 219563082 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 8.463545025 8.34470567 8.643524405 8.195605793 8.167077975 8.317625914 7.461743638 7.904374568 8.254843098 8.049852308 8.082683025 7.653511879 14389261 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 10.52714771 10.84127014 10.58426707 10.02231122 10.69891862 10.85605312 10.46354088 10.45224135 10.77468375 10.74095159 10.91443317 37547927 tftH Organic Remediation Aromatics Chlorinated aromatics Arthrobacter chlorophenolicus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.331375659 7.372272004 7.953972071 8.153242472 7.767439321 8.420599462 7.819923988 7.711025289 7.58461072 145631127 ArsC Metal Resistance Arsenic Haemophilus influenzae 22.4-21 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus influenzae; 8.002133268 7.682378951 7.544425478 7.622898643 7.46599607 7.510386571 7.708323471 7.905919541 7.638990129 7.684886444 7.8429122 154252426 pcc Carbon cycling Carbon fixation Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 8.365873044 8.056538036 8.531008706 8.500025559 8.378036669 8.25076504 8.392086813 8.23954541 8.395639967 8.437750052 8.384740324 8.37990371 260605826 proX Stress Osmotic stress Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 8.731185297 8.074213024 8.593487049 7.821196869 7.556031889 7.78052561 8.288570549 7.700028349 8.053756 7.86331093 7.805983472 7.945318727 218246875 fnr Stress Oxygen stress Cyanothece sp. PCC 8801 9.018366336 8.898856506 9.034370894 8.435618581 8.384927616 8.349504735 8.022992651 7.608087449 8.215812664 7.836826109 8.044743222 8.400385929 109452506 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.909653162 8.783923418 8.941135179 8.554629848 8.000338525 8.179671188 8.006226116 8.113264357 8.228334281 7.858545777 8.25112148 114562908 alkK Organic Remediation Others Shewanella frigidimarina NCIMB 400 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella frigidimarina; 8.0328571 8.195838213 7.760411859 7.842687474 7.755014809 7.40415829 7.920756365 7.799823581 7.767306751 7.546091205 7.717451768 198255929 pstA Stress Phosphate limitation Octadecabacter antarcticus 307 8.473120941 8.606276763 8.614183801 8.088817715 8.071228423 8.127135297 7.834430069 8.011117177 7.907685208 7.915399853 8.256145378 170111027 glx Carbon cycling Carbon degradation Lignin Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 7.653591691 7.53259605 7.646372156 7.159711654 7.463577925 133738324 sox Sulphur Sulphur oxidation Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 9.456728401 9.284941286 9.420374251 9.275280282 9.371668694 9.055579559 9.063647176 9.263376929 9.4622903 9.195955149 9.3439016 9.494348516 124258309 exaA Organic Remediation Chlorinated solvents Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 9.170889161 9.066511423 9.280299794 8.783657027 8.692110435 8.491015415 8.844221354 8.471509939 8.732762383 8.798597063 8.769364743 8.963150952 4633565 nosZ Nitrogen Denitrification uncultured bacterium ProI superkingdom:Bacteria; 8.910431424 8.747977635 8.863457652 9.022713905 9.002801758 8.702907795 8.88215283 9.037347141 8.799182004 8.917473551 8.663736509 8.875996849 15643086 CopA Metal Resistance Copper Thermotoga maritima MSB8 8.307072018 8.19058791 7.812697029 7.83524789 7.645266257 7.57056077 7.257083037 7.516412933 7.451824108 7.729417028 111609818 AssA Carbon cycling Carbon degradation Others sulfate-reducing bacterium AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 8.169506808 7.868516644 8.15338208 7.916209128 7.717198083 7.334490394 7.455261703 7.987316747 7.946705965 7.801932542 7.493985322 7.89867113 32261555 obgE Stress Radiation stress Helicobacter hepaticus ATCC 51449 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter hepaticus; 8.369952236 8.320452164 7.561598864 7.564527159 7.47731348 7.157517278 7.761614733 7.084436335 7.282179368 7.672579987 28919715 ara_fungi Carbon cycling Carbon degradation Hemicellulose Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 9.56986464 9.280776565 9.221418433 9.18267241 9.032305475 8.965110673 8.97761203 260912906 cydA Stress Oxygen limitation Pasteurella dagmatis ATCC 43325 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Pasteurella;species:Pasteurella dagmatis; 9.148396623 8.428922788 8.802412185 8.667491948 8.249143554 7.792641676 8.395609357 8.537940307 8.595145327 8.487162767 8.259241403 7.935875859 146279248 cytochrome Energy process Energy process Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 9.811851298 9.980223623 10.00834071 9.685737318 9.842485759 9.666790245 9.929164817 9.956154503 9.751069967 10.32249852 10.16773614 10.07964414 134268423 ChrA Metal Resistance Chromium Geobacillus thermodenitrificans NG80-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermodenitrificans; 8.655252249 8.581420425 8.563208549 8.7981815 8.756917956 8.983509683 8.45514581 8.742589788 8.703613741 8.865550977 9.131139073 8.549062291 150959825 nagI Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 9.562263747 9.690460113 9.849931482 9.996593857 10.04608143 9.62766929 9.810293055 10.10085657 9.415444666 9.803739738 9.663067741 9.470613153 163853920 exaA Organic Remediation Chlorinated solvents Methylobacterium extorquens PA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 8.627816828 8.690846533 8.714099869 8.150669165 8.37996966 8.566720569 8.531886996 8.448772254 8.563670411 8.566686845 8.407965218 8.718256816 63003125 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid uncultured soil bacterium 8.488286739 8.490840874 8.579230265 7.97809093 7.631880243 7.771982928 7.804572102 7.301398885 7.561158404 7.54772943 7.84430321 7.517293209 239910843 cydB Stress Oxygen limitation Thermococcus gammatolerans EJ3 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus gammatolerans; 7.260565428 7.291263487 7.069131849 6.945651658 7.380147274 269791712 pstC Stress Phosphate limitation Thermanaerovibrio acidaminovorans DSM 6589 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Thermanaerovibrio;species:Thermanaerovibrio acidaminovorans; 8.625927732 8.582667924 8.633308397 7.926128456 8.119927837 8.081407548 7.961583668 7.76377837 8.357947628 7.745384092 7.587470653 8.244123352 77969336 mauAB Organic Remediation Herbicides related compound Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.430843021 8.381025824 8.489595725 7.719425391 7.860854048 7.95032078 8.017184859 8.231919322 7.474898995 7.670816006 7.986239658 229918012 SMR_antibiotics Antibiotic resistance transporter Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 8.014883445 7.95926123 6.973245107 7.377227335 7.331746523 6.867383051 7.890697482 167351483 nmoA Organic Remediation Aromatics Nitoaromatics Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.164284082 8.186721476 7.424313238 7.157305279 7.597080823 7.291350364 7.80234789 7.502134478 7.573176938 209401718 narG Nitrogen Denitrification uncultured bacterium 9.262133241 9.204372549 8.616328685 8.327975395 8.260895474 254447630 glnA Stress Nitrogen limitation gamma proteobacterium HTCC5015 8.265448557 8.358111512 7.559400241 7.786842063 8.224186104 8.370720349 7.73348948 8.501266567 7.827128767 7.829013788 8.013571559 117165878 endolysin_transglycosylase Bacteria phage LYSIS Microcystis phage Ma-LMM01 order:Caudovirales;family:Myoviridae; 8.573926823 8.423209023 8.118723608 7.768462908 8.030823869 7.996864935 8.116223201 8.386042678 7.849815768 8.709353067 7.973339797 170782578 katA Stress Oxygen stress Clavibacter michiganensis subsp. sepedonicus 9.134537517 9.241366438 9.122180663 8.825173888 8.705475951 8.767686784 8.946558768 8.922688177 8.76327438 9.198751809 9.148745025 8.996423476 118473932 katE Stress Oxygen stress Mycobacterium smegmatis str. MC2 155 9.079733958 9.240257199 9.345287046 9.31889431 9.347136423 9.115776115 9.168271757 9.076710749 9.355444183 9.164104259 149232468 PobA Organic Remediation Aromatics Aromatic carboxylic acid Pedobacter sp. BAL39 8.757475652 8.640303431 8.746902308 7.784967481 7.86999883 8.005716254 7.83599469 7.416912204 7.722877783 7.754097749 8.014146558 149375771 grpE Stress Heat shock Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 8.218084921 8.436590805 8.344509846 8.01204468 8.155124174 7.911829291 8.2679456 8.368318792 7.940051342 8.039069517 8.158591266 8.042534187 206587408 iro virulence Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 9.137450447 9.228272353 9.328479857 9.154184778 9.1768858 9.048900783 8.965579905 9.224105931 8.840167745 9.253072876 9.470360728 8.769899966 154160794 tfdA Organic Remediation Aromatics Chlorinated aromatics Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.105887767 8.184132455 7.767278878 7.974530416 8.378101279 8.482719861 8.287011863 8.304461422 8.459399355 8.04340745 8.431002777 260630413 pstS Stress Phosphate limitation Jonquetella anthropi E3_33 E1 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Jonquetella;species:Jonquetella anthropi; 7.892581178 7.876883103 7.064930984 6.986767781 7.337278838 7.445398709 6.917324235 7.554083199 6.978051988 7.2015721 157371774 pstA Stress Phosphate limitation Serratia proteamaculans 568 8.557818365 8.637509682 8.417138893 8.156218123 7.762939598 7.902949393 7.737003341 8.102713123 8.200563807 8.120154651 8.007028273 7.940650702 148500051 fnr Stress Oxygen stress Sphingomonas wittichii RW1 9.232702206 8.953769077 9.144093639 8.802146801 8.776183051 8.466295765 8.416420069 8.831226466 8.717253084 8.683880097 8.582529515 8.895025716 94423906 gyrB other category gyrB Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.663409844 8.610907772 8.743895002 8.737110626 8.733349151 9.014394193 8.833844019 8.980857612 8.907496965 8.826594833 9.304514743 8.884949787 115388359 CadA Metal Resistance Cadmium Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 9.08772511 8.714832809 8.896974854 7.979067644 7.719509958 8.080356068 7.882037641 7.827282703 7.680819348 8.178166323 99081920 ZntA Metal Resistance Zinc Silicibacter sp. TM1040 8.606166072 8.752446686 8.641719721 8.176740883 7.564896831 8.20694482 8.019466271 7.911966712 8.001206628 7.801341298 8.21323274 145247967 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 9.002309854 8.54934394 8.903328037 7.949760918 7.826921879 8.008961354 7.864961351 7.683425684 7.673179146 7.594785134 8.006996253 124488337 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.462153647 9.526712602 9.561034744 8.934432651 8.862064355 8.86494451 9.080026854 9.366745972 8.549166024 9.312762573 9.405194197 9.2403879 118706836 exaA Organic Remediation Chlorinated solvents Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.797465219 8.698174632 8.835079918 8.451111093 8.743872094 8.692363584 8.692276517 8.8228448 8.717687135 8.69818689 8.838824317 8.776569132 218645703 phytase Phosphorus Phosphorus utilization Buttiauxella agrestis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Buttiauxella; 9.297439442 9.045014338 9.130462221 9.038357004 8.856927286 8.713897759 9.313431831 9.179075938 9.002642682 9.140867804 9.024409857 9.223967279 239983150 B_lactamase_C Antibiotic resistance Beta-lactamases Streptomyces albus J1074 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces albus; 8.036324019 8.105628746 8.227129455 8.471002751 8.116699283 8.176524488 8.428040178 8.334457877 8.478432212 8.429922602 8.131833934 169845583 phenol_oxidase Carbon cycling Carbon degradation Lignin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 8.704826657 8.584911962 8.69996956 8.48422114 8.545100638 8.600736839 8.487090522 9.076269654 8.393511508 8.736456564 8.632091883 85118214 pheA Organic Remediation Aromatics Other aromatics Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 9.205004227 8.6384049 9.377904355 8.363513755 8.073210953 8.362538873 7.842268973 8.210984022 8.196853324 8.270813839 8.295857979 198036974 nitA Organic Remediation Aromatics Other aromatics Burkholderia cenocepacia J2315 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 8.55056727 8.477460378 8.403391398 8.047122575 8.288842668 8.306711831 162452301 glucoamylase Carbon cycling Carbon degradation Starch Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 8.167235009 8.855567891 8.164625371 7.969614194 8.274717498 8.538397608 8.092412183 8.175935562 7.718531179 8.109210385 7.881697216 74038382 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.252353679 8.348703924 8.276789504 7.819004806 8.205087676 7.841413437 7.821509246 7.991305294 7.923946084 8.159368136 7.854987018 221532966 sigma_24 Stress Sigma factors Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 10.25698356 9.894113014 9.904925373 9.323488779 8.881786264 9.192864563 9.231172969 9.337390837 9.691140088 113730103 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 9.491669745 9.663085617 9.478557006 9.213454955 9.290866749 9.101962804 9.333472733 9.464655174 9.005769529 9.487759179 9.369957665 8.944298549 31616866 ZntA Metal Resistance Zinc Mycobacterium bovis AF2122/97 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium bovis; 9.738493755 10.04039792 10.10876559 9.729454969 9.740316448 9.609207318 10.036032 10.35343093 10.11649937 10.49097691 10.26901762 10.36899141 196225303 sigma_24 Stress Sigma factors Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 10.88002394 10.62038676 10.75393695 9.968121162 10.03674742 9.848231698 10.34033423 10.28966951 10.68095831 10.20554689 10.19940139 10.34273176 193212077 sigma_32 Stress Sigma factors Chlorobaculum parvum NCIB 8327 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum parvum; 8.218819405 8.285118998 8.188657087 8.28800006 7.942924205 8.013644616 7.699964015 8.392402659 7.982563445 8.248758885 8.219682143 7.841816689 148507540 iro virulence Mycobacterium tuberculosis H37Ra superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 9.367859786 9.287615384 9.285876291 8.838487578 8.75149977 8.592014206 8.483017069 8.645557106 8.474908392 8.701214566 8.869077011 9.042353681 110818588 ppx Phosphorus Phosphorus utilization Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.592280675 8.435088323 8.478348941 8.13831038 8.39388592 8.67671815 8.394499098 8.010393812 7.801309428 7.933119026 161385890 ppx Phosphorus Phosphorus utilization Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 8.373431573 8.476440431 8.207408573 8.307736501 8.145230502 8.483999836 8.325362156 7.879049206 8.435412982 7.990317182 8.312139832 7.773351568 195364313 nahA Organic Remediation Aromatics Polycyclic aromatics Propionibacteriaceae bacterium MOB600 8.981554695 8.925875077 8.758064242 8.727842779 8.754428581 8.688580792 30249004 pstB Stress Phosphate limitation Nitrosomonas europaea ATCC 19718 8.875629559 9.086271868 9.170991574 8.46283584 8.404409673 8.427192243 8.365610376 8.255706542 8.136341644 8.340426777 8.345149944 8.291644161 209543588 oxyR Stress Oxygen stress Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 8.747627326 8.912991575 9.151702298 8.531141624 8.304850501 8.298698438 8.418900065 8.67088893 8.349105313 8.603666758 8.497838561 8.604780474 90202496 nhh Organic Remediation Aromatics Nitoaromatics Mycobacterium vanbaalenii PYR-1 9.281618058 9.386550223 9.308142078 9.354554708 9.389692053 9.37925202 9.13757117 9.445397748 9.18766052 9.385547172 9.649414546 9.300142368 50236435 B_lactamase Antibiotic resistance Beta-lactamases Ralstonia pickettii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 9.085942881 8.870576827 9.073613403 8.397628873 8.459168365 8.862101272 8.757748139 8.446914205 9.126153067 8.555282243 8.470020248 8.834260062 211591176 nmoA Organic Remediation Aromatics Nitoaromatics Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 8.379629603 8.322375497 8.389428787 8.756559346 8.600531559 8.657386315 158521808 cap virulence capsule Desulfococcus oleovorans Hxd3 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus;species:Desulfococcus oleovorans; 9.353238534 9.170063968 9.50068407 8.521184543 8.495245549 8.388020757 8.097803576 8.135970592 8.328123856 8.393804123 8.755482883 83648149 clpC Stress Protein stress Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 8.189932095 7.7548445 8.008423814 7.223306379 7.425942622 7.398436826 7.622641802 7.054863255 8.072581882 7.1696455 7.238097897 7.191482563 116612458 grpE Stress Heat shock Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 9.040902714 9.286952217 9.622723557 9.197950544 9.363155419 9.19049682 9.441460618 9.982285314 9.623433364 9.889206321 9.694189865 10.01918031 269303901 ara Carbon cycling Carbon degradation Hemicellulose Xylanimonas cellulosilytica DSM 15894 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Xylanimonas;species:Xylanimonas cellulosilytica; 9.226762666 9.247403843 8.799387096 9.315829052 9.375945599 9.478839438 9.368215022 9.596063249 9.393440731 9.474165854 9.600338979 9.688010297 121594700 silC Metal Resistance Silver Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 8.908911662 9.168395446 8.705219237 8.26789398 8.820579039 8.697318695 9.09819243 8.449242128 8.826818757 8.34294589 8.489545881 8.036738106 148499215 pstC Stress Phosphate limitation Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.66824819 8.827576 8.555759421 8.878362661 8.906733412 8.728506824 8.856909983 9.119117323 8.622306641 8.85826692 8.713381045 8.913187228 62288567 primase Bacteria phage REPLICATION Enterobacteria phage RB43 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 9.194404237 9.336833339 9.415222341 8.888506343 8.751534188 8.643487245 8.692405374 8.671850159 8.692245466 8.642844192 8.690381952 8.866643576 170768033 narG Nitrogen Denitrification Escherichia albertii TW07627 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 9.345433179 9.253832082 9.426174755 8.799585806 8.800695696 8.808417538 8.717774613 8.495128743 8.763168648 8.795271664 8.917421379 9.063645298 253985052 fnr Stress Oxygen stress Methylovorus sp. SIP3-4 8.238323573 8.408682221 8.361931478 7.931607947 7.872098421 7.705884791 7.820723087 7.702465827 8.149467122 7.911194501 7.705092744 7.991415056 108766387 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 8.547117301 8.58591542 8.76710669 8.287613149 8.16408854 8.117942413 7.702761412 7.822456601 8.065308745 8.006231883 7.913696409 8.168265524 114800413 NirB Nitrogen Assimilatory N reduction Hyphomonas neptunium ATCC 15444 8.280997387 8.412613242 7.572357296 8.147864338 8.397447429 8.266948183 8.099119135 8.214536139 8.013592224 86139299 sigma_32 Stress Sigma factors Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 9.610269109 9.38564623 9.424274967 9.082764947 9.044098943 8.905267232 9.107499821 9.315423328 8.969357805 9.298278314 9.102274758 9.357018773 218961067 ppx Phosphorus Phosphorus utilization Candidatus Cloacamonas acidaminovorans superkingdom:Bacteria;genus:Candidatus Cloacamonas; 8.280407255 7.809456067 8.198519336 7.449464911 7.286170286 7.403149277 6.858896289 7.697645007 7.62356622 7.234990485 7.587683036 192285798 CopA Metal Resistance Copper Rhodopseudomonas palustris TIE-1 9.332523747 9.365418862 8.858890106 8.497067581 8.553844507 8.88785999 9.166892845 8.847012988 8.771850809 8.705151719 8.962641209 8.537325921 194684280 dmsA Organic Remediation Others Proteus mirabilis HI4320 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 8.098798488 8.062134348 7.97636122 7.70977239 7.398542841 7.825127772 8.100713301 7.986412761 7.93155052 7.612318261 7.797797133 187478278 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Bordetella avium 197N 7.520320055 7.311552913 7.426994383 7.191920457 7.712794116 7.771666079 7.480574059 7.472810769 7.699967775 170663090 srt virulence surface protein Clostridium perfringens E str. JGS1987 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium perfringens; 8.849877838 8.63744379 9.06410793 8.201519233 7.931736322 7.96818321 8.167661479 8.080988685 7.905078113 8.004553055 8.352623406 91792855 cytochrome Energy process Energy process Shewanella denitrificans OS217 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella denitrificans; 8.103179924 7.826234966 7.960318931 7.302316168 7.259006457 7.162983131 7.186247666 6.963989954 7.399523598 7.090597897 6.945008687 7.29110611 37547923 tcpA Organic Remediation Herbicides related compound Arthrobacter chlorophenolicus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8.40802411 8.519863401 8.507763948 7.393951997 7.562572118 7.75606655 7.697388423 7.277025817 8.060609276 7.324945713 7.273456955 7.737775988 146301789 fnr Stress Oxygen stress Flavobacterium johnsoniae UW101 8.650730479 8.747607423 8.63593447 7.901593598 7.892823894 8.044549845 7.754105132 7.609064211 7.974869458 7.828519873 7.963640161 8.207175152 163699781 xylL Organic Remediation Aromatics Aromatic carboxylic acid Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 8.405519997 8.232582421 8.370498719 8.168653994 8.028258751 8.188257992 7.662846166 7.899693915 8.105801888 8.094882388 8.265337348 8.141366512 227963998 ahpF Stress Oxygen stress Tsukamurella paurometabola DSM 20162 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 9.070167154 9.04134081 8.949356242 9.053163525 8.854452235 8.597301964 9.036152005 9.163670285 8.965388984 8.922735662 8.941209118 9.176675356 218244866 fnr Stress Oxygen stress Thermus aquaticus Y51MC23 8.421260027 8.7563641 8.166576354 8.01718925 8.051431694 8.426668488 8.497883664 8.177252784 8.541545848 8.365328484 8.370579093 8.585355842 29160303 exoglucanase Carbon cycling Carbon degradation Cellulose Acremonium thermophilum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;genus:Acremonium; 9.035406575 8.886094491 8.774959498 8.935912719 8.997230255 8.821643539 8.952162674 9.220776429 9.160444025 9.055165454 8.889056094 8.812246297 119897646 CopA Metal Resistance Copper Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8.474407285 8.642505402 8.311220286 7.647015246 8.286507609 8.0301855 7.866395839 7.706862285 8.206573154 7.877510874 8.171638078 8.240388039 38674622 Onr Organic Remediation Others Enterobacter cloacae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 8.864121044 8.875432053 8.880249099 8.293730483 8.424764908 8.256118221 8.129652985 8.569094371 8.694615513 8.665660747 8.641686653 8.540963602 117980557 pcaG Organic Remediation Aromatics Other aromatics Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 9.228248916 9.427752535 9.092888761 8.436599675 8.477195979 9.02422121 9.41689032 8.861275018 9.322656618 8.603216452 8.543876046 8.902209942 91795559 vanA Carbon cycling Carbon degradation Others Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 9.3433133 9.031346208 9.217235565 9.260451304 9.307825094 9.071848343 9.054605605 9.69037928 9.236074682 9.165226743 9.01998072 9.099759488 114544170 glnA Stress Nitrogen limitation Roseovarius sp. HTCC2601 8.80049714 8.154618614 8.258023965 8.649256235 8.608991335 8.523815994 8.093265893 8.65888248 8.47707118 8.618119313 8.632750161 8.634113638 228015257 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 10.0958629 9.818783149 9.690101145 9.769117584 9.294026889 8.975952725 9.550246994 9.65051834 9.427526582 9.542666746 9.663946807 9.323312279 209503100 ophC Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.721586707 8.13210651 7.975767209 7.36839408 7.713559704 7.473221811 7.931197595 7.303320808 73538231 Catechol Organic Remediation Aromatics Other aromatics Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 9.026071102 8.21418231 8.525354364 8.708023454 8.498760516 8.329623411 8.469923929 8.424953572 8.252536177 8.202994856 8.319529181 8.09708716 197285132 xylA Carbon cycling Carbon degradation Hemicellulose Proteus mirabilis HI4320 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 8.202600121 8.267270712 7.698927263 7.299624248 7.229063896 7.269609198 7.321224671 7.731259432 7.292700307 7.191195839 7.391991076 222448100 CopA Metal Resistance Copper Chloroflexus sp. Y-400-fl 8.857002321 8.975285175 8.988926747 8.457083403 8.131118959 8.381858353 7.70399631 8.036563797 8.236903387 8.028487768 8.254026273 8.613856146 227113476 ABC_antibiotic_transporter Antibiotic resistance transporter Pectobacterium carotovorum subsp. brasiliensis PBR1692 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 9.781690136 9.737548347 10.05313409 9.241053942 9.090607359 9.178581176 8.939315236 8.858271345 8.811181403 9.102983725 9.120183465 9.451100649 114776934 CopA Metal Resistance Copper Mariprofundus ferrooxydans PV-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Zetaproteobacteria;order:Mariprofundales;family:Mariprofundaceae;genus:Mariprofundus;species:Mariprofundus ferrooxydans; 9.075308862 9.094225846 9.260368642 8.456319212 8.416856326 8.494903283 8.336128411 8.06674297 8.199134348 8.334693734 8.673678701 163793552 mdlC Organic Remediation Aromatics Aromatic carboxylic acid alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 8.657718166 8.342579831 8.396811388 8.43306022 8.193415228 7.832238092 8.087392616 8.171515093 7.947502598 7.999630205 209960557 fnr Stress Oxygen stress Rhodospirillum centenum SW 8.708641509 8.978357351 8.942041795 8.315611126 8.177976819 8.263543317 8.902656352 8.126704785 9.053328797 8.009424237 8.029258548 8.171689615 206578598 nmoA Organic Remediation Aromatics Nitoaromatics Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 8.856754968 8.832648111 8.673087936 7.823259356 7.989701639 8.202611867 7.795386059 8.250095079 7.829378259 8.132493931 8.000393359 26990323 iro virulence Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.239835509 8.324003851 8.272794842 7.741893616 7.521928609 7.727578536 7.730291341 7.554432093 8.013061606 7.715900879 7.511113818 7.48845373 238763593 pstB Stress Phosphate limitation Yersinia kristensenii ATCC 33638 7.043741166 6.883829353 7.342482417 7.590368161 7.090249481 7.889979963 159181496 ppx Phosphorus Phosphorus utilization alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 10.23874326 10.09847993 9.185684937 9.188682661 9.12888321 9.09094961 9.210545574 82717636 czcC Metal Resistance "Cadmium,Cobalt,Zinc" Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.312774107 8.23469971 7.392464909 7.681055724 8.171139522 7.995963037 7.633477212 7.723291074 114800435 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 9.197835918 8.86445895 9.075198731 8.949485965 9.02020843 8.848314364 8.84145918 9.393018392 9.05180604 9.331751066 8.809202702 9.109566518 213924247 nmoA Organic Remediation Aromatics Nitoaromatics Pseudomonas syringae pv. tomato T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 8.857817018 8.859222129 8.518152558 8.600256888 8.500123662 8.144249391 8.39509931 8.622281197 8.888929555 8.433284587 8.193895322 8.267814226 7839576 linC Organic Remediation Pesticides related compound Amycolatopsis mediterranei superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis; 9.034922122 9.484991193 8.891994093 8.962687829 8.868106349 9.187704443 9.228736649 8.876156121 9.705761028 9.100847155 9.235312367 9.392765729 110825044 cumA Organic Remediation Aromatics Other aromatics Rhodococcus jostii RHA1 9.389139352 9.321738713 9.498721438 8.78316338 8.510504521 8.519272634 8.471561477 8.301615146 8.354177111 8.508847641 8.391428527 8.882850912 68536433 alkK Organic Remediation Others Corynebacterium jeikeium K411 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 8.260541462 8.101777059 8.418815097 8.224655806 8.089983897 8.110221261 7.831454852 8.609343356 8.133987226 8.363640676 8.413882463 8.631516599 229556454 obgE Stress Radiation stress Listeria grayi DSM 20601 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria grayi; 8.269391348 8.317070183 7.61077642 7.449485997 7.670111226 7.647233807 7.550496359 7.727538145 7.655838942 7.588929954 7.835176433 113725650 ureC Nitrogen Ammonification Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 9.069244742 9.231366828 9.25521175 8.876300442 8.874833483 8.896789125 9.274028654 9.036554545 9.286157396 8.951988805 8.774501399 8.970509549 259346564 xylA Carbon cycling Carbon degradation Hemicellulose Silicibacter sp. TrichCH4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 9.024817233 8.850627937 8.653752232 8.804577842 8.706946637 8.550028053 9.068714593 9.253840901 9.042808137 9.09887785 9.465252679 8.72252474 92117653 pcc Carbon cycling Carbon fixation Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 11.10560976 10.37031919 10.2205309 11.01373032 10.75481429 10.48124293 10.95441769 10.82694072 10.96956285 10.72275675 10.64511396 10.51614688 86750309 CODH Carbon cycling Carbon fixation Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.918154398 9.031713829 8.808989776 8.270412467 8.642091396 8.765294948 9.055088794 8.294077985 9.034684183 8.463513643 8.656872735 8.203220028 68343997 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.579023952 8.368364876 8.45479641 7.769789951 8.11948476 8.124569013 7.916950267 7.875310766 7.959019118 6855370 pstB Stress Phosphate limitation Streptomyces coelicolor A3(2) 7.908859216 8.318159062 8.323310363 7.727448618 7.557236984 7.761835614 8.045197516 7.577109225 7.9562985 7.527904743 7.618197054 7.3803026 120606508 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 8.947400929 9.103629204 9.10022811 8.316612259 8.322829614 8.39196054 8.494955312 8.163946299 8.918405196 8.485142293 8.561427445 8.493686966 87134985 pimF Organic Remediation Aromatics Aromatic carboxylic acid Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 9.48700162 8.63655072 8.623825175 9.204865302 9.007290125 8.650415014 9.018390369 8.658060088 8.714390264 8.822838448 8.871657808 8.533895268 189424127 nrfA Nitrogen Dissimilatory N reduction Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 8.266245455 8.008053895 8.375368337 7.874733587 7.745011796 7.685373674 7.678446282 7.71381738 8.229773003 7.839366061 7.804491425 7.568836677 209499920 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 9.302287283 9.220698002 9.305820338 8.468942128 8.567515592 8.511407231 8.627761421 8.327619997 8.398575236 8.666619142 8.808699468 184206882 silC Metal Resistance Silver bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 9.390114449 9.269206696 9.229935222 9.310532138 9.160806851 8.917970868 9.308151458 9.168632646 106764027 CopA Metal Resistance Copper Psychromonas ingrahamii 37 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas;species:Psychromonas ingrahamii; 9.430416461 9.462282012 9.477739704 8.831814791 8.83029287 8.793863742 8.892137527 8.40955569 8.89189309 8.518949684 8.64040674 8.942364684 15073052 merP Metal Resistance Mercury Sinorhizobium meliloti 9.507356303 8.611690846 8.818055465 8.831886799 8.629328243 8.626626281 8.528303192 8.731337544 8.783491459 8.520305414 8.791328354 8.593489319 21110586 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Xanthomonas axonopodis pv. citri str. 306 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas axonopodis; 9.640475359 9.412667571 9.166903209 9.727070522 9.343261712 9.199393091 9.762657551 9.643698764 9.486142034 9.397578964 9.447021745 9.52006715 256819610 ahpC Stress Oxygen stress Capnocytophaga ochracea DSM 7271 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga ochracea; 8.877200698 8.764875959 8.38556407 8.800152148 8.862858673 9.098346381 8.771302286 9.092095806 8.927575816 8.954078476 9.035063578 8.79732913 120562271 ahpC Stress Oxygen stress Desulfovibrio vulgaris subsp. vulgaris DP4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 8.299130267 8.125167663 7.73265816 7.559798101 7.410214915 7.567129198 7.779888406 7.909414438 7.613916529 7.51710261 7.450928292 218659620 Catechol Organic Remediation Aromatics Other aromatics Rhizobium etli IE4771 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 9.424853999 9.35644802 9.176583251 8.939293779 8.978993124 8.760959148 8.846705735 9.057722164 8.817362691 9.147847303 9.077198962 8.940322767 270500053 SMR_antibiotics Antibiotic resistance transporter Micromonospora aurantiaca ATCC 27029 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora aurantiaca; 8.19436892 8.013413205 8.491085207 8.42068585 8.476881124 8.000019971 8.781944004 8.057009666 8.577286181 8.595401815 8.43751409 109641682 dmsA Organic Remediation Others Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 8.987921284 8.822726957 8.766463976 8.175053851 8.098392483 8.125615011 8.008184123 7.877643132 8.094711476 7.765807553 7.691496285 8.189563572 187483177 amyA Carbon cycling Carbon degradation Starch Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 8.68177419 8.606613554 8.81883063 8.593666 8.690995676 8.474912889 8.682615448 8.567507511 8.430289581 8.549631559 8.429728943 188594205 ahpF Stress Oxygen stress Porphyromonas gingivalis ATCC 33277 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas;species:Porphyromonas gingivalis; 8.199806046 8.268786921 8.461316614 7.957261629 7.857521889 7.69881444 7.183941416 7.306171601 7.51799987 7.449852592 7.941787198 256812180 narJ Stress Oxygen limitation Streptomyces griseoflavus Tu4000 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoflavus; 8.98029835 8.753850191 8.555783247 8.129918144 8.320216076 8.403004476 7.813203293 8.844326299 7.853785018 8.111314705 8.166482742 261878035 ahpF Stress Oxygen stress Selenomonas noxia ATCC 43541 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas noxia; 8.245756868 8.21174596 8.495362587 7.792954105 7.760989232 7.642183856 7.608454026 7.60721994 7.831550166 7.514703361 7.479543141 7.551864119 229746929 pstA Stress Phosphate limitation Stackebrandtia nassauensis DSM 44728 8.798842341 9.038315994 8.578865773 8.593301175 8.518696656 8.422478786 8.485311366 8.595660252 8.706159284 8.742699169 8.726724741 8.7298561 94497881 MFS_antibiotic Antibiotic resistance transporter Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.919668089 8.799598468 8.31225749 8.238724691 8.511637834 8.768063869 8.327824761 8.528959133 8.22533656 8.473768615 8.365707486 169155568 pstB Stress Phosphate limitation Clavibacter michiganensis subsp. sepedonicus 8.608489293 8.459448729 8.547734427 8.068039274 7.8408909 8.063018075 8.335701889 7.802581747 8.5527176 7.935910897 7.713444164 7.954754991 86573350 exaA Organic Remediation Chlorinated solvents Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.286442018 8.455963766 8.25036203 8.70206404 8.371026781 8.218702131 8.59618864 8.596567622 8.588966357 8.786014327 8.719859093 37519580 pstB Stress Phosphate limitation Gloeobacter violaceus PCC 7421 8.341625939 8.019433342 8.25997835 8.084668153 8.590862193 9.017605537 7.976042394 9.025199847 8.130496525 8.150172665 8.490612436 217502542 nagG Organic Remediation Aromatics Aromatic carboxylic acid Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 8.862875698 8.805156132 9.070290474 8.426336388 8.512357692 8.36685417 8.381030253 8.622622507 8.44138879 8.853280208 8.595261868 8.731774314 256584581 sigma_24 Stress Sigma factors Saccharomonospora viridis DSM 43017 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora viridis; 8.480462333 8.730581428 8.800891474 7.937554423 8.339045349 8.246342759 8.055640757 8.386027045 8.635038076 8.367579196 8.405710963 167645409 fnr Stress Oxygen stress Caulobacter sp. K31 8.343177487 8.11444073 8.236641467 7.250417536 7.688912522 7.527934838 7.879648652 7.418346448 7.300871717 7.63093768 7.760123364 89084822 sigma_70 Stress Sigma factors Bacillus sp. NRRL B-14911 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 9.19112574 9.071884096 9.37567631 8.596868516 8.490877173 8.562071653 8.408198043 8.373216851 8.438474426 8.33636355 8.582877575 8.730195768 118468672 CDH Carbon cycling Carbon degradation Cellulose Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.011577512 8.022113567 7.723584906 7.511745001 8.073648574 8.157243246 7.973078157 8.129922555 7.595181469 221157310 ChrA Metal Resistance Chromium Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 8.34506439 8.736372239 8.605831127 8.133392704 8.852058163 8.850539854 8.510046553 8.824862119 8.585440857 8.766453547 8.555954773 209171678 dsrA Sulphur sulfite reductase Candidatus Thiobios zoothamnicoli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Candidatus Thiobios; 9.995235789 10.07228048 10.02489052 9.278474093 9.455938264 9.341240496 9.632520594 9.123872258 9.714346333 9.752139461 9.913019512 9.80655339 118571958 amyA Carbon cycling Carbon degradation Starch Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 8.073785575 8.025065049 8.43709981 8.313278384 8.046860403 7.826126792 7.993271817 8.224906893 7.822552511 8.051540806 7.594898019 144905985 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9.753897401 9.698379767 9.708024364 9.09888958 9.110633742 9.107676805 9.078625728 9.002728824 8.967504125 9.148735974 9.121576673 9.375508443 84788001 ahpF Stress Oxygen stress Erythrobacter litoralis HTCC2594 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 8.620139147 8.486154346 8.210406485 8.827462778 8.478117787 8.520144724 8.671648535 8.517320393 8.35489753 8.159424312 8.266913425 7.921885404 85671757 ppx Phosphorus Phosphorus utilization Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.882677652 8.596388255 8.488204004 8.939180001 8.374785986 8.064340595 8.7815598 8.740303576 8.755154051 8.559299831 8.416841538 8.459426639 254833164 phytase Phosphorus Phosphorus utilization Trichoderma pleuroticola superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Trichoderma; 9.030806436 9.121992112 9.270420772 8.78867204 9.062486918 8.842361161 8.434796282 8.923338776 8.926306255 8.834029969 8.844058546 9.053808828 151575999 ureC Nitrogen Ammonification Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.517306003 8.762462707 8.077336108 8.946729717 8.546233476 8.06273488 9.01358733 8.200356882 8.740237116 8.687478898 9.103817646 153798481 TerC Metal Resistance Tellurium Actinomyces odontolyticus ATCC 17982 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces odontolyticus; 9.204946014 8.950116315 9.145909471 8.936050116 8.901311821 9.462092737 8.85827905 9.976711581 9.110242623 154685620 B_lactamase Antibiotic resistance Beta-lactamases Bacillus amyloliquefaciens FZB42 8.391857909 8.221846307 8.590286958 7.803647422 8.01722731 7.716993723 8.500041257 7.777538082 8.337547772 8.151036627 7.769951601 7.984315412 110224968 gyrB other category gyrB Streptococcus equinus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 8.109348316 8.030461696 7.409387937 7.185919851 6.940408615 7.5661162 160365779 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.622010767 8.449311532 8.599264026 8.11399383 8.072545479 8.46807213 8.980550536 8.156109516 8.826039528 8.085881633 7.911606849 8.268607253 229327299 narI Stress Oxygen limitation Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 9.947252108 9.983244581 10.07377529 9.522086738 9.423939421 9.255361799 9.051896271 9.109001269 8.972621463 9.184737345 9.238997448 9.587940934 219679201 cpnA Organic Remediation Other Hydrocarbons gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.182313154 8.01277562 7.965703228 7.497058495 7.341183298 7.403607864 7.311496285 7.315050763 7.850994471 7.511399216 7.492132493 7.501407664 189348680 clpC Stress Protein stress Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 8.488327376 8.584709901 8.708126882 8.20265626 8.233575083 8.112483574 8.284687998 8.504865062 8.434392771 8.469319832 8.503271139 8.383698675 116694741 Catechol Organic Remediation Aromatics Other aromatics Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 10.90243248 10.68470862 10.49752171 10.72563217 10.58595858 10.42877 10.77258446 10.44818332 10.52939554 10.57547821 10.69955281 10.71214769 83859140 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Oceanicaulis alexandrii HTCC2633 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis;species:Oceanicaulis alexandrii; 8.650979137 8.900276276 8.545371269 8.682465149 8.654660946 8.488068238 8.816413528 8.647482571 8.543431087 8.698471197 8.634481324 8.503618751 254484600 obgE Stress Radiation stress Marinitoga piezophila KA3 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Marinitoga;species:Marinitoga piezophila; 8.663628095 8.293807228 8.337272642 8.785696156 8.506517171 8.505406142 7.756245137 7.868896542 8.233027837 8.140969658 7.908377521 255534101 oxyR Stress Oxygen stress Pedobacter heparinus DSM 2366 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter;species:Pedobacter heparinus; 8.199871127 8.404920063 7.293029179 7.249924841 7.315871753 7.064387232 7.534224252 6.91060314 7.294747497 117559208 cydA Stress Oxygen limitation Aeromonas hydrophila subsp. hydrophila ATCC 7966 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas hydrophila; 7.770864798 7.727747602 7.297864511 7.659993329 7.810783193 90433918 endochitinase Carbon cycling Carbon degradation Chitin Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 9.393535406 8.870015157 9.287645525 8.986993894 8.909797891 8.896793111 9.088402865 9.079931978 9.003432394 9.22471097 9.231682275 9.018223098 108764948 sigma_24 Stress Sigma factors Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 8.599767389 8.491839326 8.483507836 8.090379279 8.290592727 7.84031145 8.381393897 7.946755287 8.256983953 8.401580685 8.066939887 88866343 dsrB Sulphur sulfite reductase bacterium MGSB102 superkingdom:Bacteria; 8.014557189 7.840904985 7.040445887 6.985581055 83360723 CopA Metal Resistance Copper Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 9.074716758 8.912472965 9.206382988 8.524317336 8.602321547 8.366934736 8.406153616 8.744819383 8.542429984 8.818188272 8.662174655 8.52780175 84519016 Al Metal Resistance Aluminum Prochlorococcus marinus str. MIT 9211 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 8.096732758 8.221344764 7.867123511 8.120793942 7.817699499 7.636358768 7.784622875 8.175408362 8.028751875 7.975671284 7.942031335 88949311 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 10.09176548 10.19765509 9.635719478 8.934115282 9.527646185 9.818427271 10.11251105 9.170303707 10.09984945 9.227421427 9.558996358 9.061416503 223586016 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.324723136 8.586609064 8.63957605 7.716788792 7.943985227 8.07817702 8.255105134 7.722186981 8.303759375 7.777988154 7.993659338 8.054210453 222544020 sox Sulphur Sulphur oxidation uncultured sulfur-oxidizing bacterium superkingdom:Bacteria; 8.052191597 8.342973318 8.357658715 8.000994961 7.980247247 7.9832093 7.954111607 7.642671635 89343546 bphC Organic Remediation Aromatics Polycyclic aromatics Mycobacterium flavescens PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 9.028157414 8.883750994 9.187517554 8.630055532 8.469207096 8.397162585 8.401259511 8.506058536 8.582885669 8.378359937 8.154358839 8.631682942 211998851 endoglucanase Carbon cycling Carbon degradation Cellulose Penicillium decumbens superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 8.318130804 8.203328977 8.436480313 8.170288871 7.995506452 7.900567365 7.786332718 7.945141176 8.441480161 7.897643088 7.825457996 7.906414991 84386611 CadA Metal Resistance Cadmium Vibrio splendidus 12B01 9.373169027 9.010679036 9.223741907 8.102130989 8.21456601 8.279849096 8.864275564 8.173788632 8.704188204 8.5967994 8.835521354 8.861820744 142202 Catechol Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8.341757678 8.341319876 7.864867567 7.759509818 8.006112473 8.20469043 7.783269088 8.039540587 7.862577524 7.833287046 7.80125989 190685337 amyA Carbon cycling Carbon degradation Starch Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 8.30380318 8.100091774 8.425528177 7.849789294 7.877547802 7.763096423 7.311595782 7.728613237 7.827283163 7.759583621 7.735302885 49531364 cydA Stress Oxygen limitation Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 7.48442656 7.74697129 7.295109591 7.30708122 7.750453912 7.354729434 6.983719315 7.579985206 118618420 ureC Nitrogen Ammonification Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 9.330544339 9.143927015 8.91284802 9.598872234 9.350427156 9.115605324 9.022507919 8.771717653 163736036 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 8.259499928 8.299804051 8.171507364 8.200593665 8.093978111 8.266856307 8.476980918 8.416168277 8.560788039 8.537127982 8.687030225 8.397729504 77965235 proO Organic Remediation Aromatics Other aromatics Burkholderia sp. 383 8.02910807 8.087643721 7.618066389 7.562408902 7.794179277 8.099036305 7.791015966 8.061233264 7.702092773 7.745430612 7.865318657 29243106 DNA_polymerase_type_I Bacteria phage REPLICATION Streptomyces phage phiBT1 order:Caudovirales;family:Siphoviridae;genus:PhiC31-like viruses; 9.431154318 9.421667074 9.203758259 8.626328257 8.666240184 8.608777863 148261155 cytochrome_c Bioleaching Electron transport Acidiphilium cryptum JF-5 8.08072394 7.999212403 8.149231096 8.125038222 7.956496059 7.586195572 8.125995294 7.980691593 8.145060194 7.902032271 7.755774072 7.935609828 196187165 SMR_antibiotics Antibiotic resistance transporter Brevundimonas sp. BAL3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas; 9.753697944 9.753251195 9.802234205 9.310524442 9.366008195 9.266036362 9.248042968 9.454229826 9.258114344 9.391983131 9.505410428 9.518457789 168990363 alkK Organic Remediation Others Lysinibacillus sphaericus C3-41 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Lysinibacillus;species:Lysinibacillus sphaericus; 8.122697356 8.132804161 192292597 NiR Nitrogen Assimilatory N reduction Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.567107555 8.626801107 8.169734067 8.734595563 8.527572963 8.643351149 9.001695898 8.745970185 8.500455155 8.105081018 8.32801039 8.130639902 71847594 pimF Organic Remediation Aromatics Aromatic carboxylic acid Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 9.208978437 9.112300541 9.28720638 8.805276351 8.789658086 8.796313934 8.546721381 8.843125482 8.527265138 8.830770887 8.658226459 9.163322668 262372418 phoB Stress Phosphate limitation Acinetobacter junii SH205 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter junii; 8.486513453 8.335632424 8.337114609 8.502152441 8.924383257 8.672893602 8.383957561 8.993154627 8.606627884 8.952014256 8.877018474 8.911232046 169150480 mer Metal Resistance Mercury Acinetobacter baumannii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 8.646306126 8.600599095 8.678417066 8.05387337 8.009970143 8.115709083 8.025110204 8.008243725 8.235176649 8.016266302 8.216007841 8.185686956 238788334 pap virulence adhesin Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 8.441272496 8.259396813 8.387425502 8.244024765 8.000157645 8.003101236 7.784979539 8.081926726 8.330835934 8.177702902 8.114586896 8.005197019 241772456 hrcA Stress Heat shock Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 8.768270647 8.979264403 8.988231673 8.416127235 8.776350469 8.683679994 8.90886391 8.836319775 8.714290377 9.115180198 9.291585047 8.937214779 254970904 sigma_24 Stress Sigma factors Acidithiobacillus caldus ATCC 51756 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 10.44300259 10.32840746 10.35449097 10.30725318 10.03067527 9.544445778 10.33356409 10.21363677 10.34978082 10.07027642 10.14021069 9.718273564 156972415 oxyR Stress Oxygen stress Vibrio harveyi ATCC BAA-1116 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 9.555390319 9.458084849 9.43322655 8.868633814 8.813601005 8.848279451 8.875546997 9.070878448 8.879420236 9.098255653 9.135031195 9.117707868 145569838 pcaG Organic Remediation Aromatics Other aromatics Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 8.258267134 8.175879666 7.873956151 8.128326884 8.525955087 8.303441026 8.313799362 8.124760944 110822460 alkK Organic Remediation Others Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.161301855 8.085388266 7.954263313 7.943237211 8.091476334 8.126054065 7.86790246 8.382673482 7.909423906 7.877068148 7.997655875 62086133 bco Organic Remediation Aromatics Aromatic carboxylic acid Blastochloris sulfoviridis superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Blastochloris; 8.612186676 8.778100401 8.575688541 8.217131012 8.58268561 8.448782511 8.35284779 8.811204323 8.5588588 8.674403973 8.170802273 32966209 ureC Nitrogen Ammonification Nitrosospira multiformis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira; 7.871435911 8.083953542 7.47780178 7.310007563 7.299912663 7.222412367 7.0082172 7.647400977 7.420153916 7.292266593 7.615633922 119461416 hrcA Stress Heat shock marine gamma proteobacterium HTCC2080 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.339034598 8.140026222 8.299587488 7.617359198 7.90847935 7.644989428 7.605768309 7.495893946 7.784605764 7.444152235 7.427534995 7.375841585 89093170 ZntA Metal Resistance Zinc Oceanospirillum sp. MED92 10.87985517 10.71218087 10.91136062 10.72676443 10.72034722 10.53004135 10.75326311 10.57451963 10.65323677 10.8383168 10.79449025 10.67815493 147847113 cap virulence capsule Synechococcus sp. WH 7803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.018660127 7.840944854 7.976450725 7.802854449 7.801527994 7.860673304 7.930276514 8.107072807 7.920840467 8.187761078 7.538713837 110600695 mer Metal Resistance Mercury Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 9.276942078 9.11909282 9.47010564 8.776239436 8.733348076 8.586617411 8.701818367 8.91270757 8.580285869 8.799323364 8.686297649 8.90502433 260553653 grpE Stress Heat shock Lactobacillus fermentum 28-3-CHN superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus fermentum; 9.363757271 9.47168575 9.601717278 8.917521405 8.806121833 8.827279189 8.867297536 8.964212117 8.631803247 8.945000825 8.90963778 9.224438912 77820294 arsB Metal Resistance Arsenic Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.861364731 7.556698054 7.445637582 7.960005216 7.484225636 7.82857207 7.984845979 7.62742624 927236 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. M5 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 9.531414031 9.577730033 9.632952683 8.68047401 8.867491247 8.745921675 9.076500206 8.737956479 8.835882305 8.720885081 8.923530523 8.964438761 84500843 pimF Organic Remediation Aromatics Aromatic carboxylic acid Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 9.312765021 9.407904384 9.245789347 8.89291505 8.381997322 9.093841429 8.998628241 8.64648911 8.913682957 8.876690483 9.003471649 8.944059894 148547944 nhh Organic Remediation Aromatics Nitoaromatics Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.475996474 8.432260426 8.247708554 7.834501946 7.947957749 8.252334314 8.079306981 8.170406007 8.695607122 8.275014497 8.126323655 8.365150267 91800991 nagG Organic Remediation Aromatics Aromatic carboxylic acid Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 8.797447302 8.802883948 8.627148999 8.636246208 8.321944311 8.871183387 110166864 nagG Organic Remediation Aromatics Aromatic carboxylic acid Trichodesmium erythraeum IMS101 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Trichodesmium;species:Trichodesmium erythraeum; 7.760252504 7.942686498 7.269160809 7.169777852 146338092 Arylest Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.450050288 8.444600171 8.502026497 7.764704493 7.969579716 8.210754319 8.663579124 8.019223835 8.539175062 8.151191262 7.845880773 7.877071041 237805326 AceB Carbon cycling Carbon degradation others Pseudomonas syringae pv. oryzae str. 1_6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 8.442209063 8.028728811 7.340324101 7.5312204 7.500914459 7.587898732 8.01794595 8.071358369 7.728580205 7.7027842 7.645492291 134102743 glucoamylase Carbon cycling Carbon degradation Starch Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 9.734729341 8.346253991 8.372540937 9.681802007 9.569048572 9.539537793 9.359581475 9.280682065 8.921888784 9.398741168 9.540389576 9.19517845 75704170 nifH Nitrogen Nitrogen fixation Anabaena variabilis ATCC 29413 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena variabilis; 8.444860799 8.793876533 8.404089052 8.188839854 8.150292112 8.364404449 8.73439495 8.098888452 8.305129501 8.01727249 7.847829677 7.861734892 118424511 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.791283587 8.95421871 8.94157779 8.676510446 8.699600702 8.650609765 8.732935994 8.54018996 8.673756449 8.615798798 8.752768252 8.677333383 32471234 cap virulence capsule Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 9.947061265 10.057177 9.962255701 9.828921442 9.829209725 9.646970942 9.951025825 9.886722102 9.865711317 9.99026388 10.06892595 9.924920541 145245227 cah Organic Remediation Others Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8.432030149 8.450698969 7.784193891 7.825708046 7.899669908 7.639509039 7.567895717 7.778355533 7.851589847 7.78754721 7.791524718 189424595 cap virulence capsule Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 8.854379537 8.37673907 8.779113688 7.932016167 8.014889542 7.857595816 7.709518329 7.891522096 7.717851004 8.008954968 7.816572218 8.121198391 115422864 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Bordetella avium 197N 8.989729376 8.889266528 8.775845226 9.181426782 8.543305309 8.245853654 9.184587728 8.797373725 8.919677963 8.77476903 259022012 hydrogenase Energy process Energy process Rhodobacter sp. SW2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 9.152525132 9.271144595 9.387199353 8.650648749 8.718978774 8.585922515 8.504609568 8.669310242 8.490491255 8.773753421 8.747811803 8.948958754 187928451 cbdA Organic Remediation Aromatics Chlorinated aromatics Ralstonia pickettii 12J 9.549110976 9.484320991 9.116787354 9.047966421 9.501411756 9.355505039 9.608574771 8.940963839 91784304 mer Metal Resistance Mercury Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.271876745 8.363688624 8.368988237 8.173282565 8.126558961 8.188384339 8.274492763 8.250507893 8.875393569 8.780919772 8.819674974 8.399002748 206569030 proO Organic Remediation Aromatics Other aromatics Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 9.176184957 9.283667478 9.068024648 8.892441565 8.925513616 8.984734264 9.606149805 9.796549802 9.010852054 91791814 ppx Phosphorus Phosphorus utilization Shewanella denitrificans OS217 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella denitrificans; 8.798043695 8.998046642 8.504828739 8.133568834 8.299914751 7.826559283 7.832286228 7.88560559 8.018497383 8.083806072 8.312794177 110817150 atzC Organic Remediation Herbicides related compound Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 9.201343514 9.057542182 9.157780851 8.916516491 9.226066885 9.239730924 8.858546908 9.344387773 8.972478883 9.223003051 9.364454527 9.090365853 266628293 fnr Stress Oxygen stress Caulobacter segnis ATCC 21756 9.667019244 9.15849622 9.350637278 8.858864293 8.848550658 8.853642295 9.064075844 8.966186369 8.948726349 9.262772658 9.385166344 8.983955614 90422029 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.618106221 9.414465139 9.606907713 8.996340774 9.210288029 9.091837221 9.206896748 9.390620151 9.108924927 9.151005385 9.377741042 9.426167433 238695615 endolysin_transglycosylase Bacteria phage LYSIS Xanthomonas phage phiL7 order:Caudovirales;family:Siphoviridae; 9.68150149 9.578962243 8.528181273 8.608415064 8.345925745 8.683939144 8.733228018 19909557 gyrB other category gyrB Synechococcus sp. superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus;species:Synechococcus elongatus; 8.313539003 8.565658857 7.887327844 7.644778676 8.014545305 7.70564454 7.716809055 7.601282889 7.701280784 7.787671632 269838106 sigma_24 Stress Sigma factors Sphaerobacter thermophilus DSM 20745 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 9.789777358 9.998780762 9.724993657 10.13329707 9.685367837 9.435107558 257168491 pstB Stress Phosphate limitation Halomicrobium mukohataei DSM 12286 8.841144431 8.758595736 9.118525055 8.107023828 8.614802929 8.607232913 8.86300082 7.856948642 8.849824975 8.10374522 8.220442932 8.545695169 160356574 pstB Stress Phosphate limitation Bacillus selenitireducens MLS10 9.72010472 9.660379517 10.01230693 9.393725117 9.377981844 9.218303567 9.355896141 9.345623206 9.222214941 9.40439755 9.27259528 9.218553822 85834417 arcB Stress Oxygen limitation Vibrio sp. MED222 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.579335661 8.414973426 8.675358246 7.960360547 7.889977934 8.0208476 7.764322649 7.57181145 7.994693172 7.476020004 7.466891875 8.074406561 39995761 sigma_32 Stress Sigma factors Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 7.996155445 8.099769236 7.940968464 8.0279177 7.998063239 7.706922576 7.96665029 8.378420177 8.221852157 7.874415339 170694441 nhh Organic Remediation Aromatics Nitoaromatics Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 8.533989528 8.815743655 8.532025221 8.34520474 8.278777521 8.567348313 8.603552429 8.352436909 8.639131077 8.364018449 8.587055248 8.638059816 77163721 sigma_38 Stress Sigma factors Nitrosococcus oceani ATCC 19707 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 8.622643359 8.648928417 8.743309562 8.093648256 8.115899066 8.563927663 8.965617967 7.815433908 8.917576759 8.406530747 8.339651844 8.478657755 188579633 katE Stress Oxygen stress Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 9.019609211 8.615829701 8.672085124 9.047896377 8.906516661 8.766103242 9.112096328 9.044156146 8.910867989 8.958152585 9.078284114 196186424 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Brevundimonas sp. BAL3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas; 8.779065844 8.096501732 8.448697324 8.126457905 8.022701752 7.818366443 7.845478039 8.254964328 8.23495018 8.298249002 7.981990293 8.151045712 99080581 pimF Organic Remediation Aromatics Aromatic carboxylic acid Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 9.638475691 9.659155281 9.795660705 9.441614916 9.41957116 9.147094818 9.309644059 9.556767218 9.583423748 9.565937407 9.577763441 9.72689126 49473721 gyrB other category gyrB Bartonella quintana str. Toulouse superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella quintana; 9.755045226 9.486535317 10.0596298 8.933799649 8.746939874 9.005122399 9.503098472 9.24759771 9.590399021 9.008963629 9.498634026 9.366553039 111149581 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 8.155299237 8.483586252 8.344465738 7.405457005 7.706537877 7.946090642 8.327113262 7.527671505 8.52372941 7.572417566 7.705388455 7.998953969 84384707 pimF Organic Remediation Aromatics Aromatic carboxylic acid Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 8.273560505 8.333385741 8.164946817 8.505580068 8.331822658 8.373365103 8.27537415 9.080590823 8.455312517 8.810773436 8.86432163 8.81901478 214030483 ChrA Metal Resistance Chromium Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8.575641194 8.572510033 8.567908767 7.911704785 8.245774945 8.496474247 8.560809967 8.340141304 8.425607823 8.371228572 56694506 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 10.21814148 10.364164 10.58953896 10.69946796 10.68785098 10.23746068 10.45229688 10.82423293 10.53698524 10.83133644 10.5691275 10.70814438 270334050 sigma_70 Stress Sigma factors Prevotella bergensis DSM 17361 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bergensis; 8.331096424 8.08221999 8.203690817 7.553908532 7.309778771 7.529514153 7.288466622 7.247809272 8.044206025 7.275461729 7.562215427 7.24937794 126952448 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 8.575492231 8.48037775 7.982468639 7.923728385 7.719655792 7.301970547 7.300843597 7.569077641 7.599303196 146424621 gyrB other category gyrB Rhodopseudomonas lichen superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas; 9.209212948 9.359847828 254559458 fnr Stress Oxygen stress Methylobacterium extorquens DM4 8.66371674 8.429690039 7.910975394 7.776846888 8.141647314 8.379143064 7.855486117 8.36395493 7.511669554 7.619994364 7.732003383 254046305 cda Carbon cycling Carbon degradation Starch Lactobacillus plantarum JDM1 9.034992668 9.17610923 9.150844658 9.059130226 9.276256006 8.781379454 9.49877974 8.582743152 9.238097471 9.43122337 221155820 pstS Stress Phosphate limitation Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 8.411593095 8.612800855 8.520202593 8.514534325 8.27137653 8.446498773 8.357317208 8.328000254 8.318605804 8.093947724 7.986598987 7.985879273 167519689 mer Metal Resistance Mercury Monosiga brevicollis MX1 superkingdom:Eukaryota;order:Choanoflagellida;family:Codonosigidae;genus:Monosiga;species:Monosiga brevicollis; 8.804728829 8.235049174 8.451357321 7.963662831 8.261333193 8.65630196 7.831508138 8.919407998 8.724557836 8.487741562 8.446866595 221633376 catechol_B Organic Remediation Aromatics Other aromatics Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 8.016421845 8.071336317 8.336027537 7.277143546 7.476340998 7.560248558 7.700703941 7.022230802 8.035120724 7.229488845 7.614408108 119958349 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.703857575 8.850269647 8.509885225 9.102414246 9.115812678 8.820730042 8.770196398 9.199273467 8.662782209 8.991408144 8.830923681 8.293949772 260778196 iuc virulence aerobactin Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 8.521591483 8.562764462 8.697203434 7.949056047 7.91253564 7.917725831 7.735678333 7.702658949 8.151036112 8.192908559 8.037913489 7.997388366 119481903 ara_fungi Carbon cycling Carbon degradation Hemicellulose Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 8.495049903 8.682050124 8.663149638 8.263631074 8.370690352 8.243110658 8.341282125 8.580179563 8.692477059 8.739863375 8.375942236 8.481978234 56686906 glnA Stress Nitrogen limitation Synechococcus elongatus PCC 6301 8.938405075 9.088338823 9.109172007 8.615599177 8.415323474 8.518010816 8.298008009 8.163017765 8.578121642 8.406743668 8.606082657 8.767876121 221723831 catechol_B Organic Remediation Aromatics Other aromatics Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.191901604 8.024975349 8.03612969 8.350238907 7.906108181 7.602630176 8.05831214 8.062582174 8.000088005 8.011105561 7.63518816 7.771582313 50122910 AceA Carbon cycling Carbon degradation others Pectobacterium atrosepticum SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 8.650640675 8.417947537 8.129768465 7.995674011 7.836766939 8.043634984 7.795842355 7.769312725 220921548 sigma_24 Stress Sigma factors Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 8.488896066 8.321533639 8.678058943 7.897062497 7.561280179 7.910017844 8.14093595 7.604323529 8.565127739 7.994079471 8.277367967 7.856922541 271499663 iro virulence Dickeya dadantii Ech586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 9.655862757 9.784343266 9.60891989 9.209596358 10.19224073 10.10729067 10.24755227 10.15639396 9.895459248 10.28909825 9.993690028 160917807 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.406393602 8.52007227 8.567173861 8.350836687 8.589153911 8.767756044 8.308668636 8.728959166 8.227153474 8.222088329 7.988027018 169832179 fnr Stress Oxygen stress Candidatus Desulforudis audaxviator MP104C 8.731338272 8.56424172 8.198678161 7.686762304 8.06162938 8.04772423 8.525211887 7.846113456 8.415092053 8.05999136 7.932124787 8.226287305 161384634 HBH Organic Remediation Aromatics BTEX and related aromatics Phaeobacter gallaeciensis 2.10 9.505969358 9.402297594 9.43867912 9.574518382 9.111173821 9.03360973 9.643127579 8.980983121 9.157677852 9.446249673 9.19498418 9.472561447 247547018 katE Stress Oxygen stress Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 8.630724906 8.733693273 8.849614991 8.009612703 8.076472402 8.075344999 8.19683633 7.853576612 8.074144403 7.866303287 7.99831751 8.147161953 121589412 glnA Stress Nitrogen limitation Halorhodospira halophila SL1 9.770984713 9.637760398 9.970665818 10.14955 9.836563611 9.34857839 10.02753103 9.986501521 9.726293846 10.02925056 9.857705562 9.378093137 5777669 sigma_24 Stress Sigma factors Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 9.114249322 9.046678967 8.909264959 8.737600898 8.703098441 8.584401885 8.679012928 8.592368311 8.615201972 8.595104649 8.451346405 8.56682346 120587758 oxyR Stress Oxygen stress Acidovorax citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 9.734301625 9.895724702 9.76631538 10.16492483 10.10255633 9.927932063 10.00390117 10.00643466 9.602999962 9.935194477 9.873549008 9.471534185 91222197 ppx Phosphorus Phosphorus utilization Psychroflexus torquis ATCC 700755 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Psychroflexus;species:Psychroflexus torquis; 8.119670575 7.944324153 8.044111906 7.353703339 7.419070726 7.325776617 7.242698843 7.120690258 7.251630299 7.449981991 146397081 pstB Stress Phosphate limitation Geobacter uraniireducens Rf4 8.550773415 8.52597678 8.25200538 8.166183102 7.936825108 7.968648188 7.955436728 8.277170694 7.946415246 7.783189418 8.246543725 218432079 BADH Organic Remediation Aromatics Other aromatics Escherichia coli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 9.261450786 9.461344108 9.292744616 9.03375973 8.965801564 9.217065998 9.173267196 9.634881742 9.078586477 9.398009644 9.142903606 9.040588095 209516215 cellobiase Carbon cycling Carbon degradation Cellulose Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 10.03026102 9.937597935 10.00618048 9.533169644 9.986677431 9.989512098 10.60121928 9.484174749 10.24902644 9.729218421 9.860240968 9.815247132 110621572 nifH Nitrogen Nitrogen fixation uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 8.245957116 8.269531542 8.337803304 7.738778125 7.949756388 8.08580903 8.051361877 8.014196146 8.196567148 7.837573092 7.887745118 8.006986299 84786366 oxyR Stress Oxygen stress Erythrobacter litoralis HTCC2594 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 8.444775914 8.787992818 8.577499796 8.261432837 8.396161552 8.317317752 8.492577561 8.644013216 8.339328434 8.619182893 8.607994696 8.488710395 160900193 sigma_24 Stress Sigma factors Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 9.475103258 9.378547569 9.475473631 9.428119193 9.27696687 9.195819117 9.459640172 9.699689192 9.343093358 9.760574386 9.558603718 9.542920141 77378626 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.337882816 8.670820073 9.091640156 7.723402298 7.821535681 8.150185575 8.35517234 7.936758798 8.178236144 8.458497631 8.30819286 8.577051579 67524391 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 8.825912736 8.628682503 8.848839649 8.002432513 8.06834457 7.986118698 7.995164193 7.815765885 8.246748751 7.794921092 8.366409146 255062774 pilin virulence pilin Nitrosomonas sp. AL212 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 8.478396074 8.48923714 8.484520175 8.496042112 8.267170549 8.245310201 8.206081823 8.215711055 8.442392752 8.15000342 8.11952019 8.468576808 256421425 fnr Stress Oxygen stress Chitinophaga pinensis DSM 2588 9.145030939 9.145355671 9.240512506 8.817000124 8.636690787 8.592349803 8.511288727 8.4066277 8.454765667 8.764897962 8.639261097 8.608614366 126732907 pstB Stress Phosphate limitation Sagittula stellata E-37 8.475156944 8.952232941 8.388215979 8.694746562 8.364865642 8.598812961 9.063357477 8.756402844 8.971436651 8.904221445 8.882421986 71906569 hrcA Stress Heat shock Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 8.79879466 8.315492482 8.569851561 7.906602156 7.916008725 7.831477441 7.725010785 7.868340959 8.113487606 7.922705445 7.920029995 7.788479026 1652273 POBMO Organic Remediation Aromatics Aromatic carboxylic acid Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 8.370510092 8.165194348 7.904729209 8.220661519 8.406900233 8.219116707 8.528051489 8.374881638 8.220629136 8.318897168 8.257569273 86606418 cydA Stress Oxygen limitation Synechococcus sp. JA-3-3Ab superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.95155169 8.860656118 8.792144442 8.56157791 8.592183299 8.652074265 8.401208794 8.925894037 8.586563977 8.741818255 8.813194599 8.767733074 26278866 narG Nitrogen Denitrification uncultured bacterium 9.511930601 9.196206947 9.206619005 8.81385302 8.932512303 9.257826499 9.318959136 8.526153405 9.161223364 8.890742761 8.935403642 9.233119578 163259187 pcc Carbon cycling Carbon fixation Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 9.043944938 8.759609368 8.664625892 8.871003452 9.120402543 8.861211778 9.122299046 9.021995925 8.743011972 9.140616864 8.692786761 50950964 CopA Metal Resistance Copper Leifsonia xyli subsp. xyli str. CTCB07 8.452150631 8.390496047 8.352570739 8.291106247 8.166783294 8.307866554 8.563934675 8.267267297 8.650976915 8.493802507 8.462020306 8.359094724 152998320 sigma_32 Stress Sigma factors Marinomonas sp. MWYL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 8.925298573 8.731999582 9.009441714 8.13018031 7.842116876 7.96222359 7.504924338 7.927629311 7.989251196 7.98846221 8.233240478 124516668 Fe_S_oxidoreductase Bioleaching Electron transport Leptospirillum sp. Group II UBA 8.797518904 8.583325839 8.902222867 8.527613477 8.185701889 8.226963255 8.103468698 7.891135879 8.203304302 8.11257661 8.016394775 8.351400054 223490813 catB Organic Remediation Aromatics BTEX and related aromatics Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 7.974519267 8.23075757 8.358215108 8.044945772 7.979831357 7.937025837 8.012480736 7.987193392 8.195116707 8.122374481 8.092762333 8.017583787 22777932 alkH Organic Remediation Other Hydrocarbons Oceanobacillus iheyensis HTE831 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Oceanobacillus;species:Oceanobacillus iheyensis; 8.517203338 8.654492062 8.637683792 7.940585867 8.107731549 7.8319281 7.210574773 8.04154172 7.386313091 7.513156585 7.823166833 209695564 pstB Stress Phosphate limitation Aliivibrio salmonicida LFI1238 7.969329917 7.930375731 6.95880006 6.98326693 7.037535096 84691156 amyA Carbon cycling Carbon degradation Starch Parvularcula bermudensis HTCC2503 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 10.02886026 9.707137957 9.551690661 9.362186503 9.53473601 9.30920633 9.206634831 9.43629326 9.472493916 9.407563052 9.526158272 9.53030987 222086739 B_lactamase_C Antibiotic resistance Beta-lactamases Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.319637453 8.352542892 8.339472443 8.78612182 9.013153975 8.779397717 8.339665675 8.938451549 8.222478176 8.541398125 8.470573743 8.890832592 154162903 CopA Metal Resistance Copper Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.38794814 8.327162722 8.298859119 8.510102725 8.1534553 7.676126022 8.228149749 8.253984359 8.303000457 8.072061237 7.812460931 7.774475968 193290569 CadA Metal Resistance Cadmium Pseudomonas stutzeri superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.614402812 8.307433254 8.327692049 8.719248134 8.677503181 8.518254564 8.251222677 8.241011233 27351195 chnB Organic Remediation Other Hydrocarbons Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.261398398 8.457306125 8.228884784 8.406044163 8.370976831 8.117398433 8.75954077 8.464784821 8.628970871 8.470223958 8.411585929 1595853 amyA Carbon cycling Carbon degradation Starch Cryptococcus sp. S-2 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Tremellomycetes;genus:Cryptococcus; 9.180822837 9.161782033 9.043526071 8.834776694 8.975311189 8.90849967 8.634706882 8.841771066 8.625885153 8.776270525 8.763276385 8.744318281 7619819 phdJ Organic Remediation Aromatics Polycyclic aromatics Nocardioides sp. KP7 8.247330034 7.851242071 8.318894296 8.121393993 8.145098711 7.936358908 7.843391576 8.227491757 8.3275358 8.154213811 8.107217314 7.970611116 161162837 nitro Organic Remediation Others Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 8.465800059 8.932618638 8.655348566 8.956098652 8.512985293 8.423650817 8.93456002 8.715685674 8.530585576 8.597055737 8.36774071 8.618697223 167034241 xylC Organic Remediation Aromatics BTEX and related aromatics Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 10.27352785 10.26080893 10.30458179 10.18965091 10.16422233 10.14728852 10.08894422 10.29581399 10.17695278 10.42893208 10.32686338 10.49689464 90407438 ZntA Metal Resistance Zinc Psychromonas sp. CNPT3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas; 8.208723968 8.490155283 39934494 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.551384036 8.338407508 8.50107964 7.207876409 7.756159099 8.160263787 7.117732018 7.394892222 7.592986757 7.881057861 222147027 gyrB other category gyrB Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 8.342590075 8.492667139 8.485218846 8.22749195 8.120086156 8.018369262 7.879559816 8.417620335 8.392873503 8.28938264 8.037897318 7.92588273 110592191 nirS Nitrogen Denitrification uncultured organism 9.235377785 9.301956076 9.383973084 8.996344738 9.093944879 8.94849939 9.171282154 8.931950068 8.930892182 9.151106525 9.044972455 9.075501179 26984389 endochitinase Carbon cycling Carbon degradation Chitin Aeromonas punctata superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas; 8.806314791 8.529960597 8.372350256 8.967858024 9.026622109 9.033175376 8.351519082 9.038261784 8.473406651 8.838423174 8.960145095 8.345418697 222109262 CopA Metal Resistance Copper Diaphorobacter sp. TPSY superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax ebreus; 8.477353115 8.497643744 8.680556214 8.150190158 8.285443247 8.163495368 8.05830643 8.098106047 8.194739262 8.083462766 8.158097389 219965715 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.330116348 8.023050222 7.772020128 7.604105785 7.586585616 7.533208595 7.573574982 7.77900508 7.350134728 7.592623788 163745788 ArsC Metal Resistance Arsenic Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 8.142043297 8.041780423 8.034342458 7.703821148 8.285460815 8.142466244 8.166687247 8.288805473 7.698982096 46519937 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.712415888 8.664816449 8.196168068 8.566346002 8.447353173 8.372327973 8.636212072 8.644332981 8.605040672 8.745818966 8.555446236 8.152359487 254777365 katE Stress Oxygen stress Mycobacterium avium subsp. avium ATCC 25291 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 8.486554161 7.966600094 8.580183448 8.179497736 8.234457011 7.950031724 8.223664026 8.528761532 8.55183168 8.387226489 8.096558398 8.343712027 110612687 gyrB other category gyrB uncultured bacterium superkingdom:Bacteria; 8.664596048 8.827117683 8.78446386 8.055191207 7.768776006 8.082053029 8.103676301 7.680751392 8.035086458 7.745549078 7.716338122 8.021076316 148257433 MFS_antibiotic Antibiotic resistance transporter Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.292025327 8.346943129 8.273510843 8.199517627 7.941283412 7.763663403 7.922805945 8.077077321 8.209808503 8.188207853 8.202400413 8.135293235 58532933 sliding_clamp_T4 Bacteria phage REPLICATION Synechococcus phage S-PM2 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 8.220828457 8.054779023 15891847 ChrA Metal Resistance Chromium Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.736360712 8.454353391 8.904857555 8.580999965 8.665583244 8.425280362 8.863812089 8.663494691 8.574091421 8.806307636 8.957526693 8.421530898 124259740 pimF Organic Remediation Aromatics Aromatic carboxylic acid Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 8.917958724 8.991171101 8.601048297 8.425029506 8.49815349 8.999639285 9.261800665 8.914324059 8.784575479 8.528221552 8.711519343 8.688665748 89093569 obgE Stress Radiation stress Oceanospirillum sp. MED92 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Neptuniibacter; 8.673947885 8.589862691 8.910206471 8.118779062 8.09518649 7.947891201 8.014089063 8.157391397 8.23842608 7.98743962 7.718066526 7.932815703 116804550 nasA Nitrogen Assimilatory N reduction uncultured prokaryote 8.748688578 8.847024695 7.961262665 8.138679924 8.293401842 8.398845115 8.347800893 8.21553543 8.36440695 8.579501183 4633570 nosZ Nitrogen Denitrification uncultured bacterium ProP superkingdom:Bacteria; 8.087019887 7.867663231 8.107006321 8.2498547 7.294716842 7.690237787 8.214472834 7.928388444 8.397042805 8.143793724 8.115425307 8.120882309 126636898 ahpC Stress Oxygen stress Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 8.85455424 8.643804039 8.602715793 8.648067933 8.320127666 8.606552273 8.858717642 8.556894445 8.658359113 8.129692884 8.475627297 8.39442957 169778415 pheA Organic Remediation Aromatics Other aromatics Aspergillus oryzae RIB40 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus oryzae; 8.211868316 7.959898457 8.223527287 8.250822723 8.100391051 8.142410987 8.24834398 8.204928298 8.128888632 8.063132927 7.998879498 14022193 nhh Organic Remediation Aromatics Nitoaromatics Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 8.483504689 8.758415266 8.632786754 8.939289177 9.555460875 8.846792839 9.239852913 9.313664572 9.127820415 219997732 pilin virulence pilin Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 8.973022381 8.471837807 8.425302131 8.204155615 8.567190828 8.428685689 8.371391761 8.621069142 111021400 nhh Organic Remediation Aromatics Nitoaromatics Rhodococcus sp. RHA1 8.834997959 8.808357795 8.657333232 8.788420655 8.557525374 8.356512393 8.742526248 8.697295057 8.700194819 8.372190554 8.269974092 8.280061548 149187258 endochitinase Carbon cycling Carbon degradation Chitin Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 7.860426802 7.625222933 7.156918727 7.037532377 6.428377065 7.416023692 256392772 ara Carbon cycling Carbon degradation Hemicellulose Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 8.366983866 8.512131346 8.567516639 8.128068303 8.149160951 8.29169839 8.651742385 7.461386517 8.757005672 7.970150485 8.139506556 7.898186654 110162116 bphB Organic Remediation Aromatics Polycyclic aromatics Sphingomonas sp. CHY-1 8.599813442 8.330108002 8.474784686 8.051138354 8.001444747 8.103804288 8.159507588 8.117097419 8.401226471 8.152490371 8.151304094 8.057513698 260642265 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Bacteroides finegoldii DSM 17565 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides finegoldii; 7.064830181 7.117889739 196186996 pstC Stress Phosphate limitation Brevundimonas sp. BAL3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas; 9.319144547 9.364457908 9.477285007 9.075680466 9.233414482 8.746773772 8.885152598 8.717096434 8.908846962 9.096249183 9.143073801 9.068658942 91799420 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 8.1374647 8.125867408 7.9108224 7.874367187 7.816971905 7.3627034 7.89656827 7.909652405 7.683011707 7.713026505 7.321419234 5531409 alkJ Organic Remediation Other Hydrocarbons Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 9.349247278 9.162374101 260645698 mannanase Carbon cycling Carbon degradation Hemicellulose Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 9.035359548 8.962831909 8.738818561 8.932763249 8.646612742 8.519838513 8.917962672 8.831902833 8.589611789 8.912503022 8.913208479 8.427138336 26278848 narG Nitrogen Denitrification uncultured bacterium 8.963593414 8.642976217 8.529649058 8.853573089 8.312436906 7.704068748 8.629669537 8.445778824 7.719232127 228563844 sigma_70 Stress Sigma factors Dethiosulfovibrio peptidovorans DSM 11002 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Dethiosulfovibrio;species:Dethiosulfovibrio peptidovorans; 8.167447915 8.087915153 7.135517403 7.449104541 7.416207181 7.351090677 7.07505324 7.78374647 7.152490224 7.181524399 7.379354883 148273479 pilin virulence pilin Clavibacter michiganensis subsp. michiganensis NCPPB 382 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 8.671230721 8.485108365 7.930132569 8.530123733 8.65618913 8.709732228 8.607286935 8.555029295 8.18089667 8.881604261 8.255116229 218886707 dmsA Organic Remediation Others Desulfovibrio vulgaris str. 'Miyazaki F' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 10.02922412 10.13762267 9.692008735 9.476919132 9.732508576 9.831981423 9.598457747 9.815391198 9.737651907 9.792047023 10.02860369 226092926 sigma_24 Stress Sigma factors Brevibacillus brevis NBRC 100599 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus brevis; 8.288647301 8.566621945 7.916955163 7.967423068 7.993630183 7.673619 7.915707409 7.984881944 7.964824162 7.882993396 7.757134774 257466405 obgE Stress Radiation stress Fusobacterium gonidiaformans ATCC 25563 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteria;order:Fusobacteriales;family:Fusobacteriaceae;genus:Fusobacterium;species:Fusobacterium gonidiaformans; 8.794747128 8.801059438 8.887600881 8.231754903 8.214330716 7.99441953 8.031893943 8.214057293 8.288220872 7.928142176 8.382249074 533768 pectinase Carbon cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;family:Glomerellaceae;genus:Glomerella; 8.310805841 8.645160416 8.374264991 7.975368688 7.733168063 8.074551046 8.31169654 7.929367778 8.094554582 7.527648402 7.520237401 7.627576782 134291701 silC Metal Resistance Silver Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 9.603135347 9.679495677 9.390955947 9.023826982 8.870943762 8.944110227 9.221282694 8.855202236 9.324328624 9.301987855 9.583217749 9.369016871 91696108 nagG Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas sp. JS666 8.982655793 9.130504496 9.019650802 8.580776811 9.318654927 9.41259725 9.33196803 9.296398295 9.442652592 9.266851602 9.2191407 222053921 CopA Metal Resistance Copper Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 7.645643475 7.542802458 7.655503086 7.071205138 7.341773846 7.865249808 7.412048724 7.248257467 7.57551702 119173080 glnA Stress Nitrogen limitation Coccidioides immitis RS 8.437508875 7.863397984 8.125092936 8.562488184 8.771319162 8.590393622 8.174664025 8.775917727 8.294188769 8.552785742 8.521117778 8.441525216 124260184 pstB Stress Phosphate limitation Methylibium petroleiphilum PM1 8.981371044 9.062951383 9.08176837 8.325972125 8.813815415 8.893412335 8.931836316 7.94058331 9.652605189 8.207422102 7.978226569 8.488141054 78514753 nagI Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.72110119 8.554323733 8.519248087 8.34336789 8.317048825 8.357124716 8.342119503 8.774232023 8.496782539 8.439224673 8.449871727 8.516212795 163777270 mer Metal Resistance Mercury Monosiga brevicollis MX1 superkingdom:Eukaryota;order:Choanoflagellida;family:Codonosigidae;genus:Monosiga;species:Monosiga brevicollis; 8.537260569 9.163843915 8.972198944 8.94981449 9.155704879 8.835597049 8.988091373 9.201729231 9.013413184 9.206626459 8.745334964 8.823943357 94496283 ppx Phosphorus Phosphorus utilization Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 9.481646664 9.439227846 9.685726124 8.858410435 8.543539208 8.690772252 8.535968636 8.611470452 8.408613547 8.797726259 8.616191184 9.033977511 78189848 dnaK Stress Heat shock Chlorobium chlorochromatii CaD3 8.189811653 8.078989309 8.616778386 8.428434326 8.177933098 7.840541381 8.048441097 8.420949953 8.225178875 8.024911455 7.983689507 8.083804699 146407164 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 9.16670809 9.4520889 9.131458009 8.49425162 8.314141707 8.077945125 8.276261639 8.786672955 8.514541058 8.7305261 8.611366424 8.584017931 119386067 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.169909177 8.227377752 8.536307586 8.42986284 8.268907398 7.789367154 7.984732448 8.509664565 8.299955065 8.453489367 8.344381842 8.675032427 223939704 sigma_24 Stress Sigma factors bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 7.98527493 8.100858173 7.601509238 7.249494528 7.529027816 7.203205629 6.944007469 7.837562014 7.196130109 7.164158987 7.216138275 116074377 gyrB other category gyrB Synechococcus sp. RS9916 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 9.496621639 9.191005865 9.58937341 8.962243634 9.353662616 9.421578134 9.26735986 9.532959188 9.054272083 9.327312462 9.63144618 9.397669764 15807741 CopA Metal Resistance Copper Deinococcus radiodurans R1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 9.536811605 9.284175943 9.378525087 8.677965116 8.994508613 8.751316831 9.0063435 9.327370961 9.159064358 9.150930789 9.157826023 9.119256432 218751018 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 9.041730136 9.413594329 8.62432188 8.581710465 8.016839486 7.750791405 8.564112189 8.42272164 8.069970861 8.072201937 159178856 CODH Carbon cycling Carbon fixation alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 8.342585394 8.305781837 8.19318412 7.882515947 7.865468591 7.851831087 7.941271771 7.709967054 8.089933874 8.070173941 7.995265729 7.870990737 92115669 oxyR Stress Oxygen stress Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 8.274808851 8.364641374 8.300694381 8.508859926 8.41973073 8.391711182 8.10241098 8.741508576 8.519990728 8.542592927 8.422995209 8.09472601 152994544 pmdAB Organic Remediation Aromatics Others Marinomonas sp. MWYL1 7.991438129 8.118938549 7.318266381 7.442785351 7.732297538 7.831415413 7.409172543 8.111783633 7.145713876 7.058754345 217401848 ppk Phosphorus Phosphorus utilization Bifidobacterium angulatum DSM 20098 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium angulatum; 8.258123791 7.986992261 8.169357383 8.497047345 8.332548273 8.346442815 8.390836585 8.366239262 154317535 pheA Organic Remediation Aromatics Other aromatics Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 8.985892526 9.036974933 9.205318165 8.191522735 8.047808255 8.11874934 7.952891843 8.033621338 8.053234378 8.266783947 8.384018574 8.500950651 91692020 MFS_antibiotic Antibiotic resistance transporter Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 9.606679377 9.799875184 9.811239808 9.492386782 9.315384035 9.281047622 9.339405132 9.292436495 9.283399938 9.548198401 9.457591311 9.544060494 42494422 cmuA Organic Remediation Chlorinated solvents uncultured bacterium superkingdom:Bacteria; 8.659596155 8.442498255 8.359268672 8.202009422 8.016269415 7.873346486 8.166833677 7.815258123 8.673509299 8.002475258 7.883765131 7.737008985 134094896 AceA Carbon cycling Carbon degradation others Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 10.46825151 10.43040574 10.33581293 9.665370771 9.901547321 9.747238613 10.09877852 9.686157966 10.09544999 10.16319832 10.35582858 10.07088254 15077489 dsrA Sulphur sulfite reductase Thermodesulforhabdus norvegica superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Thermodesulforhabdus; 8.83064458 8.700207917 8.710883373 7.828479517 8.108556789 7.844704865 7.177666499 6.874798367 7.815189535 7.864149717 7.873322306 186477257 nitA Organic Remediation Aromatics Other aromatics Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.789042066 9.031729981 8.917286772 9.626913417 9.196296312 9.793652281 8.949600991 8.643871104 8.873308036 3128310 ArsC Metal Resistance Arsenic Rhodobacter capsulatus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 9.66904256 9.66085329 9.88938454 8.902435667 8.793702744 8.674586559 8.79288465 8.548886663 8.807438436 8.721956365 9.213930582 33572392 tfdA Organic Remediation Aromatics Chlorinated aromatics Bordetella pertussis Tohama I superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella pertussis; 8.386914353 8.188459477 8.489689023 8.367225238 8.463061995 8.497333533 7.913022297 8.48735697 7.953335443 8.450350574 8.419320805 8.406233379 189220008 mauAB Organic Remediation Herbicides related compound Methylokorus infernorum V4 superkingdom:Bacteria;phylum:Verrucomicrobia;order:Methylacidiphilales;family:Methylacidiphilaceae;genus:Methylacidiphilum;species:Methylacidiphilum infernorum; 9.275434041 9.182587185 9.289899332 8.867608697 8.427322674 8.193728898 8.307582232 8.325034272 8.574422761 8.459704795 8.441124181 8.495403344 26278770 narG Nitrogen Denitrification uncultured bacterium 9.220039203 9.220084276 9.198709228 9.070526241 9.115251652 8.955278204 9.14548498 9.656180017 188583012 nhh Organic Remediation Aromatics Nitoaromatics Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 8.755909727 8.591168696 8.696776137 8.162952626 8.137240996 8.087930345 8.098846956 8.15550503 8.345036012 8.355189384 8.246782336 8.27588265 189334498 iro virulence Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 8.83085052 8.549982622 8.175859033 9.019112255 8.776871531 8.867248014 8.459053398 8.473323458 8.272433949 39647387 alkK Organic Remediation Others Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.324904971 7.780887691 8.17900018 7.978875329 7.575486382 7.915121917 7.663201374 8.158929738 7.694231044 7.352327016 7.595547698 163802506 pilin virulence pilin Vibrio sp. AND4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 9.221100098 9.194774751 8.395896621 7.919646557 8.080937153 7.878664262 7.838382338 7.856540119 8.342852915 37519362 silC Metal Resistance Silver Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.027820925 8.249281969 8.364135435 7.736238076 7.810966954 7.858410936 7.778841897 7.863215102 8.226685893 7.833626129 8.091308683 7.798072477 242120601 APS_AprA Sulphur adenylylsulfate reductase Desulfovibrio salexigens DSM 2638 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio salexigens; 8.19436892 7.71425097 7.935436356 7.284238203 7.146564015 6.837629507 6.782781842 237731555 narI Stress Oxygen limitation Citrobacter sp. 30_2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter; 9.024061299 8.795049113 8.54350886 9.070001869 9.004964373 8.628271067 9.160628526 8.964517528 8.911922096 8.752014432 8.739417076 26987273 iro virulence Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.874216184 9.093462896 8.885884973 8.2412273 8.208027314 8.448808565 8.692656971 8.038188126 8.744358455 8.362539839 8.413929344 8.468416027 224438146 glnA Stress Nitrogen limitation Helicobacter cinaedi CCUG 18818 9.139520485 8.973056201 9.112125005 8.197504043 8.528755911 8.041046772 8.045377025 8.028094576 8.539171912 8.578210701 167070431 nagG Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 9.105230085 8.845264435 9.0054249 8.163658412 8.192865037 8.248723327 7.868205112 7.934021747 8.226416076 8.184329628 7.938634829 8.357292233 254469170 type_III_secretion virulence secretion Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 9.662626327 9.681486481 9.435290612 9.471043713 9.357888901 9.479623093 9.015071715 9.469315306 9.083730038 9.383834784 9.552339944 9.375242782 189336342 MFS_antibiotic Antibiotic resistance transporter Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 10.73174997 10.56997958 10.69146896 9.831613306 9.801801067 9.745351022 10.34182063 9.968293117 10.59723123 9.865613707 10.00535981 9.890965497 109290006 helicase_family_1_Dda_like Bacteria phage REPLICATION Aeromonas phage 25 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 8.466049395 8.695837751 8.555632406 7.828637351 8.080843424 8.312516301 8.52349395 7.717893415 8.438785293 8.149127518 8.438787505 8.076320623 156934923 Arylest Organic Remediation Aromatics Other aromatics Enterobacter sakazakii ATCC BAA-894 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 8.371040243 7.980910195 8.345685224 8.12457144 8.200516159 8.303933895 8.096251848 8.174886982 7.737142201 7.797518752 88949537 atzA Organic Remediation Herbicides related compound Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 9.905609509 9.717392091 9.567459395 10.27474878 9.945272389 9.528572904 10.04361112 10.11875196 10.02252922 10.02882444 10.12100351 9.589560144 15888482 ppx Phosphorus Phosphorus utilization Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 9.15800204 9.111454314 8.8858108 8.737247697 8.815843702 8.555867789 8.572789453 8.86165013 8.835132915 9.041058815 8.929049945 8.937400496 13815768 biotin_carboxylase Bioleaching Carbon fixation Sulfolobus solfataricus P2 8.236527157 7.884544398 8.215249254 7.916852561 7.736059256 7.74748338 7.760030221 7.684207274 7.762598098 7.733256611 7.707923464 7.755550129 83575143 TerD Metal Resistance Tellurium Rhodospirillum rubrum ATCC 11170 9.096142028 9.178051091 9.213184274 8.740881589 8.682389474 8.543161292 8.259646288 8.395890043 8.760923644 8.475569593 8.495974149 8.75584695 160427888 mannanase Carbon cycling Carbon degradation Hemicellulose Clostridium phytofermentans ISDg superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium phytofermentans; 8.412592918 8.556443848 8.42128786 8.257372857 7.981643909 7.776523558 7.452175226 7.347533421 7.965932119 7.688118573 7.761447432 7.838333751 254483573 acetylglucosaminidase Carbon cycling Carbon degradation Chitin marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 9.318492829 9.269031499 9.331023858 8.769725372 8.57645276 8.537006925 8.271084218 8.349405231 8.597963134 8.588305657 8.562291449 8.835803138 226350055 bphF1 Organic Remediation Aromatics Polycyclic aromatics Rhodococcus opacus B4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 8.463020051 8.269167971 7.801234242 7.854766707 8.064271921 8.127319159 7.933842498 8.109550007 7.996785658 7.957676967 8.15508927 94499108 CopA Metal Resistance Copper Oceanobacter sp. RED65 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Bermanella; 8.179185053 8.239527652 8.446127685 7.497372392 7.341941964 7.532570631 7.021590228 7.347364366 7.037550472 7.571179527 89897567 dmsA Organic Remediation Others Desulfitobacterium hafniense Y51 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 8.916116632 8.790191071 8.572126416 8.82544221 8.672323091 8.791230105 8.804764347 8.594242004 8.524458176 8.561087105 8.77578231 8.576008815 256560398 proV Stress Osmotic stress Brachybacterium faecium DSM 4810 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermabacteraceae;genus:Brachybacterium;species:Brachybacterium faecium; 8.30901844 8.851068359 8.475212072 8.424199942 8.731223119 8.903796054 8.978423267 8.621929593 8.851993408 9.079767083 8.739491912 9.08878242 110820056 ZntA Metal Resistance Zinc Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 9.25632496 9.455008049 9.340621607 9.850187407 9.810050686 9.571935716 9.565665583 9.925039927 9.301262115 9.907472303 9.884471693 9.405103511 9955924 toxin virulence toxin Aggregatibacter actinomycetemcomitans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Aggregatibacter; 8.267102567 8.061122067 8.665563492 7.835539493 7.825738565 7.480948766 7.617051627 7.619928865 35211898 sigma_70 Stress Sigma factors Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 8.121642553 8.187212339 8.465785097 8.130184195 7.593680677 8.100859284 8.175821354 7.965516939 8.227019702 8.148500999 7.785855011 229858229 endochitinase Carbon cycling Carbon degradation Chitin Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 9.05424471 8.691039617 8.592783595 8.335897917 8.356232408 8.234808748 7.925759987 7.898199738 8.528531399 7.774714083 8.028990269 8.287009294 261338900 pilin virulence pilin Enterobacter cancerogenus ATCC 35316 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 8.227749372 8.926602187 8.784046992 8.247228398 8.854338286 9.171637273 9.528161206 9.004612692 9.107817957 8.791152766 8.925378649 9.078936195 10176574 alkJ Organic Remediation Other Hydrocarbons Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 9.004203724 8.644387275 8.843306071 8.34084224 8.161530024 8.121020907 7.957947276 7.958759151 8.089095829 8.218251016 8.102771374 8.304252491 157283904 CopA Metal Resistance Copper Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 9.287723871 9.418903858 9.359641024 8.646809878 9.276969189 9.291427561 9.411166776 9.022947503 8.993582886 9.266413024 9.246390162 161393077 nhh Organic Remediation Aromatics Nitoaromatics Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 8.045155812 7.740244467 7.553426412 8.092448695 7.972262339 8.117231504 7.514089542 7.709149872 8.059182274 152964759 adpB Organic Remediation Pesticides related compound Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 8.554378173 8.330694392 8.699289052 8.384535704 8.265455494 8.117232835 8.303417357 8.424797833 8.242208999 8.55472011 8.272670266 8.193513958 82741479 Arylest Organic Remediation Aromatics Other aromatics Shewanella sp. W3-18-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 8.500194875 8.320563579 8.228791217 7.630354526 8.271262668 8.258511053 8.07235662 8.108613497 8.167216028 7.932611397 8.09551405 7.999585331 48745 sigma_32 Stress Sigma factors Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.429559668 8.545955577 8.282991566 8.653488305 8.657251351 8.598650199 8.463968001 8.803201915 8.48580518 8.730173742 8.822279686 8.445996574 221156987 amyA Carbon cycling Carbon degradation Starch Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 9.140634312 9.200317018 9.528826477 8.686800783 8.884135308 8.794317655 8.607588306 9.03414604 8.687206205 9.133724763 8.912222561 9.058535284 159890009 hrcA Stress Heat shock Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 8.631823789 8.378964248 8.558763148 8.07547191 7.790541376 7.611837024 7.568835487 8.065599468 8.177773171 7.897917236 7.849647421 170938621 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 8.687603974 8.481389741 8.47738628 8.002644523 8.095437009 8.05052182 8.21317877 8.503980704 7.813818283 7.785123161 7.845921751 16801701 pstB Stress Phosphate limitation Listeria innocua Clip11262 8.118530207 8.176077591 8.338378102 7.746397836 7.866035535 8.112782684 7.906287696 7.79021008 8.112229349 7.937107611 8.227861657 8.01203054 254489277 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 9.6490964 9.802655429 9.673993463 9.16723601 9.167523771 9.118306406 223694093 CopA Metal Resistance Copper Desulfobacterium autotrophicum HRM2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium;species:Desulfobacterium autotrophicum; 8.905791439 8.808234449 8.854318353 8.316597796 9.104720695 8.132423458 8.724867657 8.946275716 9.057150207 11497781 nirA Nitrogen Assimilatory N reduction Archaeoglobus fulgidus DSM 4304 superkingdom:Archaea;phylum:Euryarchaeota;class:Archaeoglobi;order:Archaeoglobales;family:Archaeoglobaceae;genus:Archaeoglobus;species:Archaeoglobus fulgidus; 6.893033927 7.944988251 8.007932186 7.534772829 7.350119294 89079597 ppx Phosphorus Phosphorus utilization Lactobacillus reuteri JCM 1112 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus reuteri; 8.677471933 8.577808554 8.833914659 7.894271467 7.843288959 7.889333383 7.50923416 7.334244387 7.890651844 7.500135717 7.9932835 169793440 narG Nitrogen Denitrification uncultured bacterium 8.512522255 8.429077752 8.408292367 8.285409066 8.734737262 8.589394661 8.419058473 8.567834771 8.238315325 8.181556289 8.309254167 57506066 nrfA Nitrogen Dissimilatory N reduction Campylobacter upsaliensis RM3195 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter upsaliensis; 6.886050374 7.112767052 6.869674701 7.39338316 6.93856693 7.375259602 85668318 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.592602901 8.219965369 8.54783043 8.558123849 8.402323613 8.19688948 8.187096782 8.625618167 8.454080322 8.460053007 8.51404855 8.63308905 113473679 carA Organic Remediation Aromatics Heterocyclic aromatics Sphingomonas sp. KA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.573814951 8.727498195 8.745143667 8.292676909 8.421347707 8.47288053 8.237453208 8.106399145 8.468520881 8.387617167 8.587049023 8.395300016 259502702 ppk Phosphorus Phosphorus utilization Lactobacillus antri DSM 16041 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus antri; 10.50441168 10.57249705 10.50397048 10.1409302 10.06013247 10.08506491 10.08956445 9.941700536 10.36363911 10.30430679 10.41791665 10.29240589 146337218 CorC Metal Resistance Cobalt Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 9.856709365 9.696324684 9.53978703 9.654474446 9.737326607 9.567274172 9.525080795 9.663116529 9.840847778 9.691858578 9.889887209 9.730066564 187919906 type_III_secretion virulence secretion Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8.543686179 8.49680281 8.747184197 8.641374403 8.637135106 8.684673942 8.380239351 8.769787222 8.646584824 8.776331203 8.604389283 8.210956119 169867661 ara_fungi Carbon cycling Carbon degradation Hemicellulose Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 8.380634774 8.84679635 8.840133621 8.471112773 8.421487232 8.392251621 8.568287777 8.544914705 8.964509071 8.619485787 158328818 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 9.157269621 9.03004836 9.378842283 8.368121859 8.327703009 8.630006414 7.97297764 8.094337549 8.344312129 8.434682723 8.60095221 119774125 cytochrome Energy process Energy process Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 8.676186372 9.031729981 8.847553991 8.636692036 8.682085164 8.978225102 7.723875712 8.186991937 8.189742089 8.789451076 1944612 B_lactamase_C Antibiotic resistance Beta-lactamases Psychrobacter immobilis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 8.9130602 8.793661307 8.269160417 8.552910169 8.240431116 8.395376806 8.24666617 8.445703144 8.844005585 8.386360241 167588842 glucoamylase Carbon cycling Carbon degradation Starch Burkholderia ubonensis Bu superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ubonensis; 8.328725476 8.086417861 8.591084109 8.269795265 8.048532781 7.890123645 8.369942168 8.548415996 8.632934022 8.219881951 8.301768391 8.362252048 188532980 CueO Metal Resistance Copper Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 8.417376142 7.640872374 7.537126738 7.757875137 7.707823353 7.759986428 7.477112553 63003135 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid uncultured soil bacterium 8.919939948 8.791360272 8.924641171 8.351919497 8.353259294 8.370709108 8.590151362 8.445676285 8.410186376 8.544336058 8.655234212 8.567670508 120592852 ureC Nitrogen Ammonification Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 9.881600554 9.85265053 10.11139912 9.651989846 9.754296278 9.582386527 9.849514327 9.665731035 9.916533489 9.827398588 10.22547167 10.01380031 240169394 narI Stress Oxygen limitation Mycobacterium kansasii ATCC 12478 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 9.965609616 9.895425049 9.964662215 9.288326689 8.954242155 8.886194327 91787387 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 8.773435344 8.418066925 8.535967642 8.884633687 8.845963778 8.730600675 8.460848662 9.121572788 8.280674037 8.687463986 8.741385893 9.195362662 189191118 CopA Metal Resistance Copper Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 8.254691815 8.001885476 8.275886827 7.994342024 8.072356338 7.827407469 7.884504244 7.878088087 7.791951336 7.971773676 7.967204554 7.700624184 118567448 glnA Stress Nitrogen limitation Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica) 8.303470819 8.197132291 7.81936754 7.505390839 7.566838121 7.31047656 7.014878936 7.35724848 7.462908298 7.701890795 115256957 pcc Carbon cycling Carbon fixation Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 9.37125342 9.388205864 9.301081521 9.333686594 9.417136789 9.313996612 9.556113657 9.828623856 9.580115966 9.880122001 9.722494228 9.669429104 108757418 sigma_32 Stress Sigma factors Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 8.51311307 8.894205093 8.752211929 9.086253544 8.743270613 8.611132475 9.03369282 8.906464641 8.891220654 8.890035624 8.744175821 8.921565405 262194562 sigma_24 Stress Sigma factors Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Haliangiaceae;genus:Haliangium;species:Haliangium ochraceum; 8.809709081 8.570138608 8.744427517 8.678165901 8.709032296 8.409986639 8.335871876 9.018769453 8.895744898 8.741993355 8.538313836 8.849930724 260851219 sigma_70 Stress Sigma factors Prevotella tannerae ATCC 51259 7.705859406 7.730661174 7.579519965 7.509768498 7.843556326 7.751593488 7.615185825 7.663772454 7.791231616 189420625 Arylest Organic Remediation Aromatics Other aromatics Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 9.589805192 9.677009537 9.780110409 8.937361673 9.011112794 8.878072754 8.881538243 9.071756453 9.062354083 9.282275926 9.149292761 9.324583108 99083005 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.297489075 8.061629111 8.112535996 7.738155528 7.648250629 8.32475026 7.435179241 7.533586614 7.823442452 7.536099402 7.459872266 7.659890516 219950556 fnr Stress Oxygen stress Methylobacterium nodulans ORS 2060 9.780480984 9.858028221 9.920680542 9.062495731 9.168412155 9.113286016 9.305368162 8.71731309 9.254250274 8.949846819 8.948722819 9.25870739 55229277 CopA Metal Resistance Copper Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 9.322707294 9.348558807 9.452671607 9.20370162 9.34565127 9.329601406 8.904461731 9.284237988 9.184981784 9.437539445 9.247668495 90408445 gyrB other category gyrB Psychromonas sp. CNPT3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas; 8.320445235 8.051631545 8.237045438 7.829668462 7.818913704 7.74167036 7.599611356 7.965822043 8.242699185 8.054597929 8.085308362 7.703729089 56476184 nagL Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. EbN1 8.519072817 8.28140526 8.435164838 7.742505343 7.687682179 7.376621519 7.804596051 7.487574642 7.748493341 7.513666625 7.749706165 148292159 vdh Carbon cycling Carbon degradation Others Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.231055332 8.476321246 7.949854934 8.288686758 8.602121663 7.380652134 8.488358087 8.052912413 7.85140438 8.78202106 149142735 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius sp. TM1035 8.087711592 8.01844359 8.377874859 7.763233717 7.986159747 8.122249307 8.140425369 8.292919579 8.187991489 8.153418767 8.301160954 8.278032803 269469112 sox Sulphur Sulphur oxidation uncultured SUP05 cluster bacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales; 8.089069375 8.011824099 8.271298013 7.935624774 7.781244217 7.573241784 7.355959649 7.753698263 7.493211104 7.453791744 7.52584244 46199672 phenol_oxidase Carbon cycling Carbon degradation Lignin Thermus thermophilus HB27 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 8.708171973 8.692078231 8.834491448 7.889329434 7.914261713 8.416366138 7.836030504 8.738548067 7.779942469 7.58222441 7.7623082 219676411 Arylest Organic Remediation Aromatics Other aromatics gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 9.659819612 9.544364077 9.761073759 9.083302698 8.915894688 8.475260702 8.770484818 8.723259253 9.203255699 156033344 glx Carbon cycling Carbon degradation Lignin Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 8.310699061 8.161025711 8.336946704 7.938361051 7.721863051 7.763118458 7.706103929 8.133482202 7.950745727 7.834895095 7.941318065 7.664929144 146402839 cytochrome_c Bioleaching Electron transport Acidiphilium cryptum JF-5 8.860061017 8.943940104 8.749227117 8.893233139 8.856253588 8.684250785 8.552219523 8.900006439 8.545946196 8.632871267 8.476682224 8.96053942 68229335 TerZ Metal Resistance Tellurium Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 7.925612354 7.983998373 7.747047396 7.734466182 8.256043918 8.099061196 7.660790187 7.85377415 15891048 amyA Carbon cycling Carbon degradation Starch Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.443603784 8.31647576 8.469310162 7.992231887 8.020134766 7.92894295 7.586436108 8.140369247 7.815220192 8.039497973 7.855509904 8.135802963 50542660 rubisco Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.523962639 8.294862652 8.608846414 8.432835418 8.314043664 8.239037188 8.381853612 8.594168788 8.385160367 8.488181278 8.322672455 8.222585606 50554653 cellobiase Carbon cycling Carbon degradation Cellulose Yarrowia lipolytica superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Dipodascaceae;genus:Yarrowia;species:Yarrowia lipolytica; 9.203806217 9.452535641 8.625403263 8.612979866 8.630031814 8.601964042 8.428264195 8.515455153 8.63031242 8.598721852 8.934000416 84498489 arsB Metal Resistance Arsenic Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 8.934724662 8.69151083 8.804413525 8.31347776 8.312358117 8.147769239 8.1017791 8.275179083 8.172903093 8.148694026 139439042 pstB Stress Phosphate limitation Collinsella aerofaciens ATCC 25986 8.830702291 8.734215494 8.94458453 8.694441824 8.266590029 8.797787822 8.78796871 8.674586332 8.753287642 8.697618053 8.754902241 8.707207746 147920804 pstB Stress Phosphate limitation uncultured methanogenic archaeon RC-I 9.288662461 9.002080977 9.488859425 8.781727362 8.610142637 8.491233064 8.876214661 8.870351219 84516351 nagG Organic Remediation Aromatics Aromatic carboxylic acid Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 8.900142734 8.749082045 8.937511338 8.292578862 8.214404627 8.167388207 8.381487533 8.044410609 8.31443754 8.145426233 8.049954926 8.172191567 124266467 pstA Stress Phosphate limitation Methylibium petroleiphilum PM1 8.536873545 8.821481727 8.458591169 7.520317976 7.63729656 7.888121883 8.031870471 7.262119597 8.637874985 7.732436987 7.597819904 7.686642699 71916009 pimF Organic Remediation Aromatics Aromatic carboxylic acid Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 9.440041634 9.141030972 9.099454192 8.90365646 8.796154768 8.681204358 8.877136076 8.87208633 8.862981756 8.774571667 8.803301003 8.74430876 58001852 fnr Stress Oxygen stress Gluconobacter oxydans 621H 8.150981368 8.294085936 8.254522228 7.723199525 7.888746499 8.001490983 8.282938539 8.06755534 8.075130435 8.160109066 8.240979672 8.357899246 196184096 pstB Stress Phosphate limitation Brevundimonas sp. BAL3 9.196115558 9.256616359 9.19356746 9.578923422 9.437618441 9.186589197 9.633888521 9.653020339 9.497086643 9.734988954 9.548214413 9.572914351 206566164 MFS_antibiotic Antibiotic resistance transporter Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 8.43054603 8.338035794 8.203809302 8.400944338 8.391264838 8.41804726 8.583598393 8.571553275 8.445795575 8.377254633 8.504927164 8.378789221 145572218 iro virulence Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 8.99742755 9.021018049 9.141286716 9.142761669 9.335154701 8.908746525 9.241148973 9.529512132 9.131102544 9.212916065 8.91709025 9.039335232 209539130 ara Carbon cycling Carbon degradation Hemicellulose Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 9.13761604 9.213557592 8.551671309 8.45002852 8.437786524 8.312147997 255934032 glnA Stress Nitrogen limitation Penicillium chrysogenum Wisconsin 54-1255 8.783582583 8.827370405 8.97655964 8.125148923 8.206224766 8.503249696 8.54220094 7.988716471 8.792880664 8.249793045 8.156812382 8.352276248 91787506 bclA Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 10.37132429 10.32871223 10.26079812 9.720861721 9.575416485 9.223097887 242242916 obgE Stress Radiation stress Staphylococcus epidermidis W23144 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus epidermidis; 10.57450123 10.66886075 10.33504435 9.653047517 9.971893395 10.50973186 10.59225703 10.62921602 10.72768919 10.05325257 10.50719152 10.12988601 159045346 sox Sulphur Sulphur oxidation Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 8.760887916 8.7457544 8.797646782 8.314632432 8.471220609 8.344540984 8.347792517 8.514545508 8.590170322 8.505667218 8.521719399 8.570427631 117164536 pnbA Organic Remediation Aromatics Nitoaromatics Streptomyces ambofaciens ATCC 23877 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ambofaciens; 8.767207447 8.471126995 8.854201477 8.245304927 8.414660465 8.397144116 8.433594223 8.320342344 8.613203103 197722496 TerD Metal Resistance Tellurium Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 10.66307392 10.60109646 10.81985939 10.77232086 10.65780442 10.6149921 10.85768298 10.69812339 11.12269932 10.83568621 10.90385382 10.8347653 262198104 sigma_24 Stress Sigma factors Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Haliangiaceae;genus:Haliangium;species:Haliangium ochraceum; 8.182732433 7.936312281 8.282553557 7.724677564 7.666055849 7.876434372 7.624634662 7.702626161 7.852112468 7.591345469 7.57311974 7.481202948 209885923 ALN Organic Remediation Others Oligotropha carboxidovorans OM5 8.319502768 8.305364377 8.204300117 7.425919849 7.465465526 7.952482072 7.843214414 7.428261948 8.27888672 7.721651026 7.787025461 7.752890681 162456180 sigma_24 Stress Sigma factors Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 9.677117408 9.753969387 9.808905328 9.055990873 8.852644837 9.225595693 8.949385748 8.808350354 9.170384495 9.197241592 9.442096383 9.442611317 83017302 gyrB other category gyrB Microbulbifer hydrolyticus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Microbulbifer; 9.002999819 9.000398727 9.099209923 8.316104383 8.242562715 8.490815296 8.332752367 8.401671826 8.469309829 8.156438989 8.560585147 33243251 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.864238249 8.787075045 9.051588335 8.895068841 9.063021264 8.779402462 9.292629305 9.247910135 9.007299343 9.274576075 9.483013191 8.929539374 149359756 tfdA Organic Remediation Aromatics Chlorinated aromatics Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 8.444682523 8.080015064 8.178360889 8.058708543 8.089932163 8.145381358 7.959510047 7.912959296 8.319807758 7.881618032 7.946422849 8.219027857 162954045 pheA Organic Remediation Aromatics Other aromatics Renibacterium salmoninarum ATCC 33209 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Renibacterium;species:Renibacterium salmoninarum; 9.89882457 9.189682399 9.268749169 8.715414087 8.920169478 8.798014018 77383205 mdlD Organic Remediation Aromatics Other aromatics Pseudomonas fluorescens Pf0-1 9.995554484 9.162554843 9.361614344 9.357425231 9.565736305 9.038068685 9.586306034 9.487184556 9.302379026 9.42218798 9.38027422 9.271787891 196171848 sox Sulphur Sulphur oxidation Anaeromyxobacter sp. K superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 8.604821635 8.569885458 8.532147139 7.806960369 8.134015913 8.458449697 8.806917451 7.946476938 8.870048112 8.273601832 8.188249742 8.493322324 81251657 nirS Nitrogen Denitrification uncultured organism 8.867119113 8.615499058 8.911241678 7.659632904 8.050183463 8.409709285 8.40494799 8.02209508 8.379477587 8.251898605 8.487328951 8.546251388 118030691 pchCF Organic Remediation Aromatics BTEX and related aromatics Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 9.149655846 9.070925279 9.019749044 8.976613616 8.757501587 8.659956041 9.188974335 8.956981041 9.026094466 9.03934207 8.708222788 83591026 ZntA Metal Resistance Zinc Moorella thermoacetica ATCC 39073 9.854514445 9.683984669 9.785571396 9.008510523 8.701794162 8.785028271 8.833478121 8.66886249 8.684585305 8.805313123 8.887698915 9.24692706 239980838 B_lactamase_C Antibiotic resistance Beta-lactamases Streptomyces albus J1074 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces albus; 9.086943817 9.002164185 9.003631071 8.471670258 8.296366592 8.391338754 8.270504196 8.327079582 8.3840361 8.376079527 8.463573458 8.690954986 56677321 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 8.772004413 8.51190043 8.55014789 8.365744226 8.285674945 8.178544383 8.115338173 8.404086882 8.335352727 8.310031928 8.241525105 8.408358992 270291407 obgE Stress Radiation stress Pediococcus acidilactici 7_4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Pediococcus;species:Pediococcus acidilactici; 9.505512478 9.372249014 9.382182383 8.567955463 8.669240442 8.613518627 8.515348373 8.06571706 8.54705126 8.518031083 8.47567601 8.89092774 91787641 pstB Stress Phosphate limitation Polaromonas sp. JS666 8.281891907 8.423383456 7.999204361 7.922586696 8.083399226 8.280612986 8.001229217 8.368583736 8.001679547 8.060606742 8.582583944 118472448 ureC Nitrogen Ammonification Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.374597798 8.571812926 8.333027023 7.892351565 8.387246273 8.930835578 8.806553293 8.531695327 8.646566486 8.662154409 8.466562528 92443198 pcc Carbon cycling Carbon fixation Mycobacterium sp. KMS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 9.04049576 8.762520882 9.103689538 8.381900838 8.475305841 8.124829563 8.530160888 9.047731792 8.66569471 8.795677579 8.966401429 8.706164527 84689890 oxyR Stress Oxygen stress Parvularcula bermudensis HTCC2503 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 8.972752061 8.966977277 8.580237667 8.303467103 8.430211727 8.288199831 8.653094474 8.815081321 8.914710019 8.85009789 8.694028326 8.656271476 197712973 xylC Organic Remediation Aromatics BTEX and related aromatics Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 11.30651613 11.18192546 11.13334121 10.77056064 10.84422101 10.6192807 10.81412967 10.33216237 11.05112751 10.63586445 10.79943082 10.62227534 146401832 katE Stress Oxygen stress Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 8.812586671 8.795678385 8.758479086 8.25484505 8.349482323 8.180478555 8.094664096 8.168361101 8.230799376 8.21496178 8.041364628 8.211395058 72118434 bclA Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.362155244 8.228496623 8.027716894 7.711681311 7.772645976 7.751766386 7.729868549 7.893425714 7.724798014 7.602796399 7.71809021 242132897 sigma_24 Stress Sigma factors Dickeya dadantii Ech703 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 9.531989442 9.685584361 9.271717242 9.561641112 9.677616357 9.971628478 10.28507454 9.730123076 9.464116018 9.373578357 9.575487795 9.245756124 220710211 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 9.284353052 9.353632979 9.396436133 8.719908323 8.670829599 8.705462063 8.918826065 8.587015067 8.969642679 8.860559987 8.994061085 8.805299213 20090337 dnaK Stress Heat shock Methanosarcina acetivorans C2A 8.431935606 8.407589616 8.26980947 7.683808263 7.474633479 7.736064305 7.911543975 7.496409086 8.319183185 7.545934491 7.503642954 7.58118938 194341331 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.763498912 8.55894838 8.514610716 8.588459149 8.774245885 8.603117295 8.476576582 9.187680276 8.502610304 8.966574293 8.637034959 8.609014444 68511363 ArsC Metal Resistance Arsenic Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 9.654534413 9.672459261 9.602734678 9.269938754 9.312266798 9.270518347 9.092369631 9.416002857 8.894296385 9.390644932 9.454967216 9.479329371 167661195 pstS Stress Phosphate limitation Clostridium scindens ATCC 35704 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium scindens; 8.837969944 8.732233909 8.556925512 8.592336054 8.550864625 8.255102781 8.919562659 8.676438724 8.695863766 8.443663803 8.719799876 118424446 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.35274397 8.145773148 8.458818399 8.318082285 8.19420982 8.215044738 8.390532613 8.147785498 8.205243495 8.195970612 7.977046851 229468284 SMR_antibiotics Antibiotic resistance transporter Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 8.757134113 8.69549861 8.715420124 8.324472898 7.987755531 8.075564123 7.781661077 8.005553112 8.208361041 8.11657915 7.956804356 8.277866345 70731297 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.44657386 8.510983021 8.658497778 8.11464635 8.406568514 8.291115264 8.205090287 8.818623289 8.689467761 8.475374413 8.604223325 229088050 SMR_antibiotics Antibiotic resistance transporter Bacillus cereus Rock3-44 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 7.81910142 8.097243919 8.343282895 7.392214712 8.513638438 7.740370453 8.008720657 8.858056773 78222736 pimF Organic Remediation Aromatics Aromatic carboxylic acid Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 8.012192034 8.228613812 8.250642059 7.3555238 7.387699242 7.533977754 7.364466624 7.178291628 7.872614563 7.446838338 7.417179849 7.75212956 67084226 nmoA Organic Remediation Aromatics Nitoaromatics Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 9.827294265 9.861331922 9.723118218 9.363528737 9.308286089 9.196373406 9.328035721 9.189000713 9.569863195 9.463741184 9.563758563 9.424890551 63258945 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 8.397560521 8.255410523 8.492779241 8.100239885 7.860549268 8.020386712 8.289974758 8.070999956 8.42817868 7.7398366 8.028253947 7.676302991 197776540 xylA Carbon cycling Carbon degradation Hemicellulose Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 10.13291371 10.08641251 10.02839141 9.700055241 9.954338993 10.14758908 9.781145088 9.915812133 9.897688231 9.856450135 10.32828096 9.916582977 85705829 pstB Stress Phosphate limitation Roseovarius sp. 217 8.342857986 8.621990808 8.488433261 8.171890642 8.191963916 8.208790264 8.163932196 8.159326151 8.393159696 8.316208264 8.302564402 8.33517458 238764148 AceA Carbon cycling Carbon degradation others Yersinia kristensenii ATCC 33638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia kristensenii; 8.941865463 8.697943447 8.537011469 8.785509183 8.8655942 9.177807701 8.577587267 9.213354677 8.362640758 9.150914355 9.317304389 8.79268476 219951889 amyA Carbon cycling Carbon degradation Starch Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 9.345039933 9.391131229 9.583599753 9.765540139 9.920281705 9.574809834 9.568321933 10.04942869 9.520293657 9.798165013 9.527638674 9.746063931 86169581 gyrB other category gyrB Weissella halotolerans superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Weissella; 8.399098844 8.45920532 8.73838222 7.880489435 7.892358913 7.898107696 7.528753637 7.376389349 8.108249674 7.673938076 7.630214001 7.991038508 187487080 pulA Carbon cycling Carbon degradation Starch Chloroflexus sp. Y-400-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus; 8.436927272 8.288258514 7.58314672 7.639636899 7.782311347 7.661423352 7.061173941 7.970301099 7.606201426 7.598327593 7.687055095 56311637 ChnA Organic Remediation Other Hydrocarbons Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 8.385023815 8.560470113 8.290791309 7.859309604 7.506173726 7.569298475 7.732694639 7.495759518 8.233652254 7.936677662 7.978527884 7.939835862 26278708 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.098078449 9.052558572 9.248588088 8.548927379 8.367939393 8.512198476 8.788145043 8.400637081 8.374330856 8.355248226 8.246817331 8.563880782 114228270 exaA Organic Remediation Chlorinated solvents Alkalilimnicola ehrlichei MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 8.922001514 8.575140471 8.770685539 8.551794359 8.725540969 8.514921408 8.429892877 8.764038801 8.348928262 8.513753028 8.441068952 8.954617211 241766774 sigma_24 Stress Sigma factors Acidovorax delafieldii 2AN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax delafieldii; 8.973507765 8.578679406 8.282720411 9.164946325 8.954263015 8.405517797 9.097063348 8.989132459 8.810643021 8.903943389 8.927267668 8.643519294 120556372 AceA Carbon cycling Carbon degradation others Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 8.105732846 8.068684945 7.740430956 7.850472581 8.09851664 7.707890685 7.649477355 7.974340238 7.849190005 8.073871388 7.857590467 261251823 iuc virulence aerobactin Vibrio orientalis CIP 102891 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 8.443357298 8.646989812 8.762159935 8.274870815 8.146105441 8.05209226 7.828902236 7.973130152 7.904902474 7.689411717 7.869041894 8.185572126 77953180 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 8.179140779 8.138113041 8.53994293 7.37333809 7.30257976 7.58394486 8.05599745 7.540789015 8.180194593 7.362728815 7.44183612 7.579847221 33668161 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces griseobrunneus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.404477685 8.581686533 8.338234873 8.407297259 8.273014916 8.181850281 8.443444835 8.172394657 8.442837565 8.580616149 8.347746356 47018870 pstB Stress Phosphate limitation Listeria monocytogenes str. 4b H7858 8.497766574 8.278287 8.585274936 8.079781226 8.006385355 7.962064812 7.716089081 7.761784875 8.27604838 7.716155699 7.718506817 8.060486071 111057812 tfdA Organic Remediation Aromatics Chlorinated aromatics Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 7.942985409 7.854720928 7.950815105 7.080611124 7.716309871 7.104873843 7.457794739 6.995560542 7.054459073 6.975867721 84502846 pcaG Organic Remediation Aromatics Other aromatics Oceanicola batsensis HTCC2597 8.828547501 8.532319296 8.408710834 8.31228691 8.776178554 8.678243962 8.565444325 8.68641045 8.570531043 8.85232745 63257357 CopA Metal Resistance Copper Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 8.347621443 8.221719211 7.847919195 7.857381081 8.22196696 8.080644172 8.080947121 8.069706111 7.90225821 117648891 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 7.674812818 7.854449614 7.767892032 7.918552375 8.315064583 7.959214126 8.213729556 7.956679635 8.135755974 254505875 pstB Stress Phosphate limitation Vibrio parahaemolyticus 16 8.730187209 8.618022017 8.865180423 8.49792688 8.208668702 8.164167713 8.415305762 8.498429933 8.497294838 8.362802647 8.228132069 8.469580306 53757574 ppx Phosphorus Phosphorus utilization Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 8.595352198 8.446922365 7.595932502 7.962859429 7.864600824 7.591312299 7.820631884 7.760764912 7.819948407 86750207 CODH Carbon cycling Carbon fixation Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.241584403 8.147388146 8.364587212 8.584207893 8.354403308 7.460025462 7.808386259 8.163973854 8.052984419 8.136215688 8.140271492 77655372 ArsC Metal Resistance Arsenic Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.920966881 9.761631288 9.923383192 8.911453507 8.961240788 8.867778572 8.981527334 8.62015662 9.263064266 8.789366496 8.791249967 9.124803037 260893571 sigma_70 Stress Sigma factors Ammonifex degensii KC4 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Ammonifex;species:Ammonifex degensii; 8.706023627 8.524294289 8.582489014 8.108088388 8.328776202 8.085362977 8.108803086 8.140783127 8.214352528 8.29215884 8.094261429 8.326796217 256741019 rubisco Carbon cycling Carbon fixation Thiomonas intermedia K12 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas;species:Thiomonas intermedia; 8.453388484 8.124787615 8.34663025 7.597815339 7.38872891 7.296940908 7.438957961 8.128914759 7.585963173 7.37264843 7.827325711 118468905 hdnO Organic Remediation Aromatics Heterocyclic aromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.48945635 8.989992682 8.872206811 8.241557901 8.187016497 8.497249488 8.50851784 8.052856315 8.712297175 8.102014284 8.228417259 8.372019275 227341689 glnA Stress Nitrogen limitation Rhizobium sp. NGR234 8.27157402 8.11810302 8.525853358 7.834157109 7.896292599 7.675683643 7.712840397 7.897315368 7.93372242 7.499421708 7.602426929 148501158 phtA Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.949001774 8.756050193 8.797113812 8.72675059 8.840387387 8.637896061 9.017394172 8.820883967 8.639968159 9.060213352 8.960249403 8.662709384 161339355 catechol_B Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 8.821408879 8.841475718 8.793716065 8.240680939 8.318664748 8.092905857 7.9722366 8.278726631 8.585327345 8.30671078 8.489624082 118069791 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 8.698556804 8.808004247 8.876028609 8.352258864 8.190140983 8.224781188 8.099113127 8.319292182 8.23919233 8.196487779 8.133276633 8.336158348 163854761 cydA Stress Oxygen limitation Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 8.932777746 8.768682016 8.604380514 9.016559912 8.672157195 8.208789195 8.4348355 8.731720856 9.103432452 8.354354069 8.428065712 8.211019872 148852166 TehB Metal Resistance Tellurium Bacillus sp. SG-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 8.27197765 8.213715657 7.861549111 7.872384599 7.531038133 7.487931775 7.368537009 7.623181772 7.38612421 7.559855191 114541783 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 11.59829742 11.39245726 11.39140893 10.73320988 10.75160285 10.74867687 10.38042351 11.24974461 10.72436866 10.96624263 10.64008214 77920128 mer Metal Resistance Mercury Pelobacter carbinolicus DSM 2380 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter carbinolicus; 8.207250316 8.168436359 8.626934648 7.709955578 7.700183491 7.733765569 7.22848236 7.569741061 7.811366528 7.621811723 7.760224253 7.845477427 149916354 glnA Stress Nitrogen limitation Roseobacter sp. AzwK-3b 9.08422019 8.833702309 8.763102227 8.401431624 8.589892045 8.887465641 8.843396632 8.660624515 8.90547807 8.46862718 8.227971613 8.49796605 218988984 phenol_oxidase Carbon cycling Carbon degradation Lignin Mycena sanguinolenta superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Mycena; 10.37557695 10.34661256 10.44389215 9.655994313 9.521142736 9.438752249 10.07176793 9.631106255 9.926866271 9.603156491 9.93632512 9.88442703 168698322 Catechol Organic Remediation Aromatics Other aromatics Gemmata obscuriglobus UQM 2246 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata;species:Gemmata obscuriglobus; 10.12332391 9.955482812 9.928597756 9.696719217 9.502031666 9.424237542 9.601790266 9.343017277 9.704857472 9.533669703 9.80599203 9.588321204 4490992 nagG Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.538753018 8.325068818 8.557188948 8.207559185 7.900472183 8.407341666 8.316767626 8.508969868 8.273969625 8.387928591 7.762125629 214029943 Catechol Organic Remediation Aromatics Other aromatics Ruegeria sp. R11 9.160511444 9.227279703 8.865550234 8.53851175 8.575709088 8.431366967 9.364443771 8.484620112 9.208946005 8.472349923 8.574589245 221737945 oxyR Stress Oxygen stress Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 8.597518505 9.007355053 8.698339705 8.487966297 8.573595189 8.378647048 8.356464898 8.660593754 8.499439098 8.933817108 8.725529357 8.674627872 68304958 dsrA Sulphur sulfite reductase uncultured bacterium BAC13K9BAC superkingdom:Bacteria; 8.112619512 8.19234722 8.194563289 8.316711968 8.15086193 7.939019031 7.532870334 8.323913158 8.04101575 8.190050488 8.12662954 7.721100497 126032271 exochitinase Carbon cycling Carbon degradation Chitin Hypocrea jecorina 9.19998025 8.783175377 8.713496718 8.202874138 8.052609134 8.297451873 8.358156793 8.188461571 8.882387648 8.388145971 8.439615101 8.709370702 192808922 gyrB other category gyrB Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 9.641530135 9.476528124 9.697188377 9.013267413 8.889584978 8.873413923 8.801903077 8.858593688 8.823180504 8.901577442 9.024896161 9.271742411 13093629 ZntA Metal Resistance Zinc Mycobacterium leprae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.709169469 8.705365443 8.58845265 8.114427529 8.311213844 8.198824995 8.080515193 8.363490711 8.500244482 8.680866176 8.37482675 8.515260733 145257564 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8.367616771 8.088193807 8.033394591 8.071174815 7.737817546 7.865838223 7.882972649 8.058268038 7.822896096 7.827143194 7.719612885 2632576 TerZ Metal Resistance Tellurium Bacillus subtilis subsp. subtilis str. 168 8.35710399 8.090090863 7.977207078 7.62680683 7.656570819 7.730803528 7.661861038 7.709692106 8.181079761 7.676051209 7.527064807 7.911104783 223414524 mer Metal Resistance Mercury bacterium enrichment culture clone IIE7F4P2 7.361569053 7.052595868 7.209341466 7.119543904 7.240287338 6.981416959 7.274976408 25028864 benD Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 8.547722491 8.566424559 8.620334046 8.618871417 8.600044334 8.420930985 8.604717426 8.461255768 8.730715885 256362530 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 8.990482186 8.684739476 8.06241287 8.738949489 8.760478231 8.681874928 8.251551999 8.661161817 126726683 CopA Metal Resistance Copper Rhodobacterales bacterium HTCC2150 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.047689083 7.995883666 8.120908449 7.825826346 7.840446637 7.723405572 6.965031175 8.020812918 7.826535822 7.8703019 7.762266788 7.910592203 115256305 ZntA Metal Resistance Zinc Rhizobium leguminosarum bv. viciae 3841 8.914589584 8.190161646 8.80649735 8.065437131 8.057080477 7.984309347 8.142234945 7.723675938 8.514217894 7.837886555 7.764654718 8.145682088 163258548 nagG Organic Remediation Aromatics Aromatic carboxylic acid Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 7.28670542 7.15716222 7.288013588 7.643004474 7.116475541 8.178862574 119481647 BpH Organic Remediation Aromatics Aromatic carboxylic acid Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 8.302835148 8.301691687 8.639583354 7.155130856 7.273000488 7.571901712 7.643822352 6.926036609 7.856512072 7.42031804 7.676310103 7.556596408 9651047 xylJ Organic Remediation Aromatics BTEX and related aromatics Pseudomonas sp. superkingdom:Bacteria;phylum:Proteobacteria; 7.89811001 8.277231122 8.063348378 8.010733352 7.995184829 8.035445695 7.900739377 8.08783661 8.249509724 8.153926036 7.934008494 7.954952271 190694973 AceB Carbon cycling Carbon degradation others Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.315521243 8.620483806 8.573445192 8.671829366 8.342206728 8.321802439 8.425907663 8.517547857 8.564820771 8.217810724 8.20717227 7.915109808 119504526 exaA Organic Remediation Chlorinated solvents marine gamma proteobacterium HTCC2080 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.204674346 8.111079408 7.871248832 7.512884117 7.475356106 7.337850593 7.554869383 8.008530644 7.700478973 7.553427717 7.69991292 5881858 chnB Organic Remediation Other Hydrocarbons Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.679299781 8.444977885 8.706796957 8.435588237 8.611857379 8.610449455 8.373947893 8.509675951 8.467011326 8.407496496 8.938739156 8.452620607 206575800 alkJ Organic Remediation Other Hydrocarbons Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 9.044581145 8.597523693 9.391451645 9.20417335 8.748462465 8.786809635 8.886454363 8.79880152 8.626949815 8.788220512 9.216265776 8.572088553 256362354 sigma_70 Stress Sigma factors Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 8.288498494 8.276509375 8.472877899 8.393891873 8.406081236 7.992642776 8.177324015 8.310817065 8.283949822 8.315067056 8.285054268 8.05323189 115372960 Catechol Organic Remediation Aromatics Other aromatics Stigmatella aurantiaca DW4/3-1 9.350888234 9.790355411 9.348354751 9.540688556 9.701008089 9.643507054 10.13208258 9.892957721 9.569361622 9.813714306 9.98656735 9.835793109 21929222 mnp Carbon cycling Carbon degradation Lignin Phanerochaete sordida superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 10.55599497 10.36237003 10.38410288 10.05675108 10.00566857 9.983243532 10.21466423 9.946553111 10.30843252 10.10622908 10.35372705 10.44363989 161507491 Al Metal Resistance Aluminum Lactobacillus helveticus DPC 4571 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus helveticus; 8.253875368 8.204133228 8.356220886 8.154732988 8.02687471 8.028236825 7.935617519 7.82861785 8.280226529 8.230494982 8.286930229 7.726909651 148501896 Arylest Organic Remediation Aromatics Other aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 9.025719812 9.199682119 8.932078102 8.102243353 8.116774596 8.359283273 8.599550106 8.28310625 8.51862826 8.264767821 8.237580151 8.315458504 13425442 TerC Metal Resistance Tellurium Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 9.090087572 9.089849083 9.357215179 8.425102821 8.692867552 8.84981401 9.002545557 8.236402971 9.199192369 8.680289407 8.777178267 8.773770376 27354485 exaA Organic Remediation Chlorinated solvents Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.194913988 8.237563534 8.403469712 8.365711064 8.151992951 7.795047867 8.58433295 8.089336167 8.329245972 8.262433273 7.902790693 222477146 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 8.841658253 8.81068811 9.040099025 8.408542799 8.483742729 8.438682726 8.197507921 8.677170658 8.358105047 8.676653279 8.529685743 8.727139403 27544674 gyrB other category gyrB Legionella waltersii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella; 9.27237029 8.231872624 8.258173615 9.039595941 8.881566312 8.798089115 8.76369055 8.674260927 8.342067545 8.741372742 8.566737973 8.33528963 1805413 cellobiase Carbon cycling Carbon degradation Cellulose Bacillus subtilis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 8.83306547 8.730292088 9.181812863 8.217687263 7.795172273 8.182108153 7.670978752 7.683321655 8.171999047 7.953608519 8.158017778 8.186374195 148255491 linB Organic Remediation Pesticides related compound Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 9.769074127 9.69209331 9.869753384 8.834512028 9.062976363 8.963501031 9.546015242 9.089878547 9.496799076 9.055453442 9.277739447 8.998970803 114764707 nagG Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 9.005052383 9.175665154 8.65326276 8.782120636 7.953757952 8.577335442 9.113694105 8.600903732 8.558023276 8.403801417 8.385106083 8.456923484 221311568 ChrA Metal Resistance Chromium Bacillus subtilis subsp. subtilis str. 168 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 8.304907012 8.393918343 8.416920953 8.248263758 7.83372907 8.118327395 8.347672812 8.459472661 8.028542153 7.884779224 8.291842475 71273718 mnp Carbon cycling Carbon degradation Lignin Trametes versicolor 8.269421728 8.247805829 8.175729577 7.807775571 7.971599423 7.686460113 7.672158906 7.844691294 7.816767862 239928467 ureC Nitrogen Ammonification Streptomyces ghanaensis ATCC 14672 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 10.36208077 10.44449286 9.768982547 10.07779163 10.01289617 10.52207802 10.08681094 9.880897273 9.457026312 9.762407255 9.793007608 149818977 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 8.964936499 8.06660811 8.685471754 8.439419124 7.810207587 8.609225454 8.468395579 8.587710525 8.286424651 8.277308568 8.28821988 33596941 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bordetella parapertussis 12822 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella parapertussis; 8.572911772 8.544792863 8.609681558 8.705204223 8.941282721 8.842380685 8.991007065 9.078584457 8.911239844 9.263607814 9.068328103 8.769429523 115520245 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.961053801 8.837299807 8.631418927 8.745244699 8.583856196 8.428926773 8.766539249 8.736688888 8.588261067 8.787987884 8.595759824 8.673608195 161387290 pcaG Organic Remediation Aromatics Other aromatics Phaeobacter gallaeciensis BS107 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 8.746324276 8.88572533 9.058467496 9.044949276 8.939593911 9.047187164 9.017626427 8.997660477 9.150114813 78363134 cap virulence capsule Thiomicrospira crunogena XCL-2 8.480069093 8.238992353 8.368327878 8.931176524 8.800782222 8.585385562 8.749182244 8.713586336 8.684054743 8.685178217 8.422373959 8.629487201 148501932 silC Metal Resistance Silver Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 9.102357982 9.203101018 9.167066902 8.83390378 8.942649546 8.5523642 8.548755224 8.518200932 8.556731029 8.717651287 8.89440848 8.855921886 74056846 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 10.01779251 9.986104034 9.990397506 9.386752943 9.383761849 9.589496678 9.95166545 9.65974906 10.12579286 9.662897023 9.742392713 9.867027705 20502025 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.982055794 8.817716698 8.96063899 8.572917975 8.833697807 8.923638054 8.780981443 9.090347137 8.753610707 8.716384898 9.163064537 8.848080624 92433681 gyrB other category gyrB Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.925085982 7.731128618 7.550848753 7.728267946 7.552263949 7.596192798 7.577296832 7.350577857 7.46825054 256680816 AceB Carbon cycling Carbon degradation others Streptomyces sp. SPB78 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.722581077 8.881716454 8.868712839 9.236448533 9.082753731 8.89226928 8.906267529 9.282698412 8.855569126 9.074488309 8.973587913 8.681259862 261857075 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.287173742 7.196357198 7.275657162 7.043736854 7.039111833 7.644958611 7.263921627 7.376847395 7.323886556 77959534 gyrB other category gyrB Yersinia bercovieri ATCC 43970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 8.196068504 7.983079529 8.397425296 7.818944143 7.823028904 7.533148817 7.681389855 7.77178423 8.13021487 7.679168499 7.523879277 7.651475424 21111346 pcaG Organic Remediation Aromatics Other aromatics Xanthomonas campestris pv. campestris str. ATCC 33913 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 9.033118575 9.018180805 9.045327629 8.4104053 8.520979034 8.624679132 8.265724242 8.450995293 8.734272377 8.411779171 8.464204837 8.499734357 157847012 MFS_antibiotic Antibiotic resistance transporter Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 8.073318025 8.121876575 7.797005521 7.68378924 7.5833874 7.472464629 7.464008202 7.951669595 7.495613293 7.618628921 7.573623426 551714 katA Stress Oxygen stress Bacillus firmus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 8.970074512 8.532944281 8.303345544 7.25108147 7.690410487 7.800494142 7.790432684 7.482984634 253572321 pcc Carbon cycling Carbon fixation Bacteroides sp. 1_1_6 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 10.91163493 10.83993035 10.75883956 10.72790822 10.69802889 10.6405013 10.77773255 11.13652227 10.73436308 10.62260106 10.46916294 260089627 sigma_24 Stress Sigma factors Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 10.86497131 9.925949325 9.792149085 10.48454854 10.1216959 9.658648996 10.39933577 10.35207721 10.56114973 10.05787405 9.980843007 9.613602072 170728315 pilin virulence pilin Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 8.907421661 8.7820171 7.892486652 8.131989663 8.516628182 110822035 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.386023557 8.761018326 8.4861213 7.961817537 7.948548973 8.054751506 8.025805209 8.2137579 8.131676841 8.319048131 8.40160484 8.154712295 118669678 pcc Carbon cycling Carbon fixation Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.260500647 8.256489726 8.328982403 8.478859029 8.672687261 8.379054324 8.657179061 8.723707178 8.620445304 8.584679378 8.823903783 8.386600109 197241642 CadA Metal Resistance Cadmium Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 9.212896224 9.419964592 8.783592059 8.808447904 9.020079866 9.024193941 9.03495492 8.670055584 9.178106133 9.209317141 9.466335986 9.455719635 159178582 glnA Stress Nitrogen limitation alpha proteobacterium BAL199 8.899070826 8.742636774 9.006836419 9.576748216 9.485494085 9.331430733 8.716917082 9.366693531 9.244904693 9.066906787 9.002331155 8.548252416 196230092 exaA Organic Remediation Chlorinated solvents Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 8.855500424 8.963986566 8.944406968 8.307066141 8.766900339 8.634690791 8.072593255 8.826366074 8.13885754 8.294907806 8.365047985 88643378 dsrB Sulphur sulfite reductase uncultured prokaryote 8.458450333 8.741006802 8.890745727 8.05472715 8.148427267 8.220186168 8.128761134 8.202232383 8.097713858 8.268896806 8.362096832 8.351876623 258523136 obgE Stress Radiation stress Corynebacterium genitalium ATCC 33030 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium genitalium; 8.486818704 8.5822913 8.424085038 8.280688225 8.24123024 8.449163753 8.501889054 8.783066029 8.53941915 8.330322723 8.644037767 260769410 GroES Stress Heat shock Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 9.858955198 9.711695146 9.809215849 9.330234442 9.401975536 9.301800058 9.900299109 9.078052301 9.963125016 9.420656974 9.61909241 9.473098138 111224912 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 9.733209302 9.551294615 9.586494998 9.679943483 9.933789883 9.671407188 9.625690913 10.19002805 9.615303258 9.763514197 9.754539068 9.955170615 85670044 CopA Metal Resistance Copper Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.703733098 8.181089219 8.1938535 7.543126262 7.519986755 8.006656539 7.921011227 7.697595178 7.747928676 259169348 ppx Phosphorus Phosphorus utilization Lactobacillus antri DSM 16041 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus antri; 8.480306652 8.537010179 8.710584272 7.616401279 7.925388192 7.722343845 7.352456088 8.493805543 7.896391482 7.681748523 7.902534342 240104982 AceA Carbon cycling Carbon degradation others Coccidioides posadasii C735 delta SOWgp superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides posadasii; 8.893406828 9.04492666 9.182449267 8.238752061 8.452618996 8.606331771 8.470754863 7.74948949 8.227204416 8.295180134 8.314593463 2196830 gyrB other category gyrB Shewanella algae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 8.91728688 8.831533631 9.0813696 8.43476219 8.371039157 8.547665762 8.280856646 8.14685872 8.557387685 8.151871378 8.395524637 8.513808297 118504792 CopA Metal Resistance Copper Pelobacter propionicus DSM 2379 8.78778392 8.744581721 8.614659111 8.212902905 8.189603855 7.942437353 7.793061418 7.905649347 7.81874848 7.485574638 8.383971492 34103675 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 9.354739705 9.405489244 9.46439519 9.069538437 8.735656441 8.594043301 8.711919865 8.986101145 8.495034303 8.888049362 8.757450031 9.257182157 156446889 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.393681972 8.617566839 8.597225311 8.916484036 8.582420761 8.478075323 9.068320177 8.974527842 8.58759413 8.973991796 8.549135953 8.421670617 104781656 mauAB Organic Remediation Herbicides related compound Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 8.383201903 8.293097351 7.495557877 7.516907393 7.962556456 7.736656487 7.763901764 8.243754058 7.908539627 7.735737727 7.629743803 256361214 amyA Carbon cycling Carbon degradation Starch Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 9.020292126 9.003797789 8.984537067 9.09593213 9.028871721 9.014893478 9.151768461 9.494077237 9.451857961 9.50467636 9.331641938 9.469321724 254480369 pstA Stress Phosphate limitation marine gamma proteobacterium HTCC2148 8.969949504 9.340375524 8.886113167 9.121929788 9.341062258 9.259439628 9.23993017 9.477535693 8.85408586 9.428023251 9.440778845 9.484442777 188584599 fnr Stress Oxygen stress Methylobacterium populi BJ001 8.745262625 9.067283511 8.843615609 8.19954472 8.596844487 9.135207781 9.302256707 8.763758896 9.175738898 8.800844358 8.568373643 8.819386976 76803684 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 8.489337241 8.686840122 8.599902178 7.639774963 7.70666182 7.85487231 7.733150242 8.285693277 7.67470198 7.567279784 7.78501861 227377795 endochitinase Carbon cycling Carbon degradation Chitin Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 8.189537762 8.552870867 7.501212041 7.775592096 8.166289952 7.105069208 8.254752984 7.519474437 7.466688301 7.925732012 121700482 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 8.279075729 8.384935762 8.299105362 7.934572268 8.172807528 8.373167093 8.079426225 8.721084158 7.991313538 7.973732324 8.08212726 151422195 pstA Stress Phosphate limitation Nitratiruptor sp. SB155-2 8.758493425 8.666330916 8.819346052 8.054828381 7.879604416 8.038155665 7.893591103 7.754151739 8.050574698 7.760126146 7.769079746 8.189491046 171681764 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Podospora anserina superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 8.904472488 8.858309826 8.896753809 8.955019559 9.022974087 8.989656804 8.783452052 9.048333448 9.198436692 9.036885653 9.147770663 9.295140675 110635447 pstB Stress Phosphate limitation Mesorhizobium sp. BNC1 10.28673181 10.15467973 10.23535199 10.38414649 10.39565651 10.10898107 10.44944619 10.57359538 10.22576402 10.63618861 10.35296392 10.36035314 227497116 xylA Carbon cycling Carbon degradation Hemicellulose Actinomyces urogenitalis DSM 15434 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces urogenitalis; 9.320259275 9.28452732 9.515795286 8.712650673 8.652693326 8.59846627 118036361 nmoA Organic Remediation Aromatics Nitoaromatics Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8.665222689 8.821740853 8.427533348 8.776704336 8.819899895 8.593251567 8.785872401 8.562185737 8.828951434 8.434623474 8.685839046 8.260882283 156519335 BMO Organic Remediation Other Hydrocarbons Pseudomonas butanovora superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 8.772169614 9.149453511 8.751167945 8.535786899 9.068411478 8.994571137 8.674236096 9.200729215 8.960061314 9.083151584 157368829 glnA Stress Nitrogen limitation Serratia proteamaculans 568 8.951157853 9.04139681 9.005384394 8.497819483 8.451775272 8.201040399 8.281064805 8.60493219 8.343380921 8.623790101 8.542284417 8.780391115 218166739 clpC Stress Protein stress Cyanothece sp. PCC 8801 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.687517386 8.688685983 8.91631868 8.391461704 8.273200199 8.060200564 8.34049578 8.247822341 8.031346614 8.013460354 8.24562499 83026030 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 8.292401048 8.33349941 8.023782277 7.907797276 7.931186665 8.212162127 8.080249611 8.103896963 8.13092431 8.22070285 8.156799619 7.941596175 125713249 cap virulence capsule Clostridium thermocellum ATCC 27405 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 9.137429215 8.810612546 8.850395648 8.591191712 8.755505271 8.446614281 8.539541021 8.78612806 8.323934544 8.578508367 8.301310086 8.548488554 15614424 ara Carbon cycling Carbon degradation Hemicellulose Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 8.041444795 8.017831494 7.822579765 7.690126464 7.307331455 7.148438414 7.655305222 7.451186124 7.494551639 7.586546306 4468117 dehH109 Organic Remediation Chlorinated solvents uncultured beta proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 8.813362004 8.591733285 8.402967534 8.665036439 8.458424537 8.312013699 8.916991153 8.040428499 8.747236084 8.649154467 8.383350425 258648228 oxyR Stress Oxygen stress Prevotella tannerae ATCC 51259 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella tannerae; 9.223678319 8.95886915 8.713147536 9.093673933 9.041620056 8.858338043 88859470 amyA Carbon cycling Carbon degradation Starch Pseudoalteromonas tunicata D2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas tunicata; 9.168047445 9.181847079 8.927896166 8.180877293 7.97070769 8.080170495 7.753314525 7.010746026 7.814261129 8.021869146 8.141848535 108772637 scnABC Organic Remediation Others Mycobacterium sp. MCS 9.047242851 9.316732062 9.17383625 8.795465162 8.797794715 9.103911504 9.441217622 8.617980831 9.346764486 8.755970911 8.881465137 8.798830907 116700123 obgE Stress Radiation stress Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 8.839183728 8.460486145 8.54509052 8.026864516 7.648741761 8.201857292 8.451887963 8.14561586 8.368551846 8.262329913 8.296567965 126739798 glnA Stress Nitrogen limitation Roseobacter sp. SK209-2-6 8.178620252 8.262748704 8.273994897 8.02833207 7.982992016 7.740712918 8.0822941 8.38703381 8.36348237 8.382120044 8.21220226 8.215607996 27351224 catechol_B Organic Remediation Aromatics Other aromatics Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.51692699 8.812198407 8.821487264 8.495133802 8.202633065 8.128047002 8.319608488 8.077503226 8.607718643 8.132868517 8.074332358 8.075453634 156235429 atzA Organic Remediation Herbicides related compound Roseiflexus castenholzii DSM 13941 8.308648912 8.381428325 7.881538673 8.062959199 8.283598118 8.001034317 8.290337611 8.093984992 8.032186809 8.282429313 8.144677401 99082959 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.143878936 8.172841259 7.964843698 7.9147979 7.721395656 7.70064198 7.515527683 7.618293119 7.77926919 7.68849822 7.561819497 7.654957831 82715000 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.445225703 8.744630171 9.058396044 8.511910731 8.584486135 8.342456219 8.286202331 8.465837286 8.742135336 8.739901514 8.62190304 8.731533582 118706452 vanA Carbon cycling Carbon degradation Others Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.415839877 8.58458358 8.455560013 7.671797647 7.83704184 8.080598704 8.070184391 7.293108043 8.252320369 7.672597113 7.696782198 7.806970944 70959472 lip Carbon cycling Carbon degradation Lignin Coriolopsis gallica superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Coriolopsis; 7.534492771 7.480472768 7.354110154 62424949 AceB Carbon cycling Carbon degradation others Brevibacterium linens BL2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium linens; 8.531278748 8.736220285 8.142711655 8.320827338 8.269094476 8.186554758 8.388521427 8.556662482 8.289877783 8.149091223 8.492964495 75817278 endochitinase Carbon cycling Carbon degradation Chitin Vibrio cholerae V52 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 8.329649761 8.056120232 7.744687847 7.663232313 7.416182133 7.034972624 7.381451245 8.051961331 7.509328556 7.686002988 149371314 pcc Carbon cycling Carbon fixation unidentified eubacterium SCB49 superkingdom:Bacteria;phylum:Bacteroidetes; 8.854221733 9.035897578 9.191362949 8.634761913 8.274144874 8.26841734 8.189827522 8.198562055 8.346401232 8.082788457 8.148317588 8.496201992 170116610 katE Stress Oxygen stress Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 9.529847848 9.434364358 9.407361307 9.29920644 9.298918081 8.917252896 9.42590625 8.645375053 9.099359892 9.186496666 9.1089754 167033934 ureC Nitrogen Ammonification Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.277531722 8.061772177 8.221655222 8.02601543 8.199765673 7.604315497 7.35638644 7.91211744 8.047997896 8.016808822 7.938325219 7.6441463 150399551 atzA Organic Remediation Herbicides related compound Methanococcus vannielii SB superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanococcaceae;genus:Methanococcus;species:Methanococcus vannielii; 8.856113805 8.570904101 8.720993301 8.205959376 7.959472464 8.051544989 7.823694234 7.735490742 8.217239065 8.082968734 7.874875168 8.185623376 158312372 tfdA Organic Remediation Aromatics Chlorinated aromatics Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.714038383 8.874312254 8.763992067 8.964774767 8.718811948 8.699632029 8.860454126 8.833445924 9.134055116 8.891913116 8.6441181 8.586606953 239992253 pstA Stress Phosphate limitation Streptomyces roseosporus NRRL 11379 8.762424439 8.792964121 9.098246062 8.645264094 8.562345976 8.610178217 8.400626522 8.572344588 8.475489458 8.628906928 8.426227303 8.601234577 116193589 AceB Carbon cycling Carbon degradation others Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 8.939125033 8.88355897 8.976814949 8.924597349 8.762197535 8.791149582 8.843814621 126438200 scnABC Organic Remediation Others Mycobacterium sp. JLS 8.328849433 8.604073996 8.634974332 7.998705452 7.822522459 8.224369761 8.253284291 7.77951732 7.607782373 7.793401643 7.998318988 218295962 pstC Stress Phosphate limitation Thermus aquaticus Y51MC23 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus aquaticus; 8.81211645 8.618073938 8.863574223 8.512955191 8.881776312 8.220432281 8.801857245 8.501951187 8.594159672 8.661909935 120611670 iro virulence Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 8.755063636 8.792056027 8.716880502 9.578350479 9.440471405 9.422632717 8.704291538 9.554771613 9.026287657 9.271057058 9.346440286 8.679607373 254448747 hrcA Stress Heat shock gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.625743568 8.607558438 8.707438256 8.275176621 8.194225839 8.455865388 227953141 grpE Stress Heat shock Meiothermus silvanus DSM 9946 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 8.912454179 9.32043985 9.125598487 9.375889318 9.386541553 9.020649924 9.385136568 9.234191514 8.870692502 9.529843321 9.267362508 8.754664407 63029734 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.842650918 8.86961625 8.93248117 8.172961086 8.348997554 8.0310015 8.022581038 8.038688166 8.33175706 8.01384891 7.993152114 8.314035496 18997123 exoglucanase Carbon cycling Carbon degradation Cellulose Thermoascus aurantiacus superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Thermoascus; 8.640083198 8.162134551 8.602200685 8.204461297 8.314562837 7.842357818 7.857038088 8.440009879 8.070398824 8.352779629 8.536436134 8.190058599 183581784 pstS Stress Phosphate limitation Kocuria rhizophila DC2201 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 8.558371645 8.43406827 8.602102181 7.933330707 7.899025216 8.019817173 7.977117933 7.979344124 8.345430634 8.191236275 8.223032462 7.938190939 88858182 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Pseudoalteromonas tunicata D2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas tunicata; 8.454725688 8.209919438 8.364971509 7.403150519 7.713733075 7.874839834 8.033928312 7.865793697 8.37845063 7.867828025 7.892418825 8.071289076 99083225 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.950235632 7.878637633 8.121692813 7.296150441 7.105067145 7.1648992 6.854462807 6.680604317 7.432444851 6.987573175 7.0327359 7.37344892 108761575 phtA Organic Remediation Aromatics Aromatic carboxylic acid Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 9.338744127 9.354358685 9.437905757 9.642829182 9.300787889 8.707170834 9.241569206 9.344545103 9.3284225 9.282724873 9.040851178 8.994759719 227331870 glnA Stress Nitrogen limitation Citrobacter youngae ATCC 29220 8.596811536 8.55406328 8.805805302 8.160223656 8.309148975 8.223582477 8.310471356 8.59712789 8.289159845 8.370372936 8.198750674 283810631 sigma_70 Stress Sigma factors Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 8.720772757 8.765703693 8.929803673 7.977581678 8.38925292 8.279699171 8.295427617 8.303337225 8.797627255 8.359150837 8.69010988 254169923 pstB Stress Phosphate limitation Thermococcus barophilus MP 8.949063307 8.457241548 8.684981253 8.295613228 8.235169153 8.278640087 8.063241206 8.106559736 8.127179965 8.05793402 8.108209321 8.529901821 154253049 fnr Stress Oxygen stress Parvibaculum lavamentivorans DS-1 8.368130107 8.452041208 8.499351135 8.663072016 8.757054831 8.689522761 8.518062523 8.718758499 8.514346778 8.783734763 8.578529604 8.16119009 159891268 TerC Metal Resistance Tellurium Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 8.232378865 7.968028653 7.30122488 7.224400624 7.51954515 7.582106742 7.083666917 7.896005565 7.063928288 7.342297566 7.735144049 188090628 sigma_70 Stress Sigma factors Xanthomonas albilineans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas; 8.889464209 8.566726823 8.560154942 8.799223541 8.680763555 8.498254189 8.469528096 8.770344846 8.672045564 8.821693303 8.94861152 8.499362704 90107980 fnr Stress Oxygen stress Rhodopseudomonas palustris BisB18 8.728625881 8.215590087 8.844775573 7.942385575 7.733003865 7.751790118 7.59593794 7.327331523 8.020240134 7.903780774 7.932963315 7.712870696 37651310 dxnA Organic Remediation Aromatics Heterocyclic aromatics Xanthobacter polyaromaticivorans 8.296327837 7.841383173 7.94742285 7.665689021 7.654900823 7.419486128 7.371166717 7.403173358 7.849128897 7.447866302 7.46493585 7.621418457 3192697 non_contractile_major_tail_protein Bacteria phage STRUCTURAL Enterobacteria phage N15 order:Caudovirales;family:Siphoviridae;genus:N15-like viruses; 9.249610132 9.092558769 9.19565832 8.155298052 8.056765189 7.982003573 7.898428242 7.89378503 8.363423152 7.820249333 8.057131597 8.455388369 126462908 hydrogenase Energy process Energy process Rhodobacter sphaeroides ATCC 17029 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 9.117750363 8.644143314 8.693511944 8.545039453 8.239668722 8.23609046 8.314290057 8.474054085 8.287762365 8.294604823 8.422322987 227820073 ahpC Stress Oxygen stress Rhizobium sp. NGR234 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 8.443867222 8.622261537 8.386410612 7.64029137 7.861473457 8.484732315 8.83117703 8.41756685 8.890433416 8.335480913 8.198123231 8.113979458 222082695 ChrA Metal Resistance Chromium Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.58725084 8.942920981 8.712472558 8.806460617 8.818189733 8.655586931 8.863502992 9.119730095 8.856493246 8.986005689 8.85326793 9.013586475 219860138 sigma_24 Stress Sigma factors Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 8.295046889 8.623313294 7.869901942 7.628401986 8.086648511 8.680014097 8.07163003 7.816525344 7.920783781 7.883879096 20520950 narJ Stress Oxygen limitation Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.405025458 8.058634949 8.358572843 7.77642869 7.843793552 7.796207396 7.794327735 8.022159241 7.794713263 7.969166953 111018854 Catechol Organic Remediation Aromatics Other aromatics Rhodococcus jostii RHA1 8.425639112 8.222236604 8.087598314 8.152166271 8.236522046 8.096761321 7.886723918 8.093093023 8.203936625 8.458371288 8.153246693 8.240140641 118701835 nagK Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 9.813256458 9.825385318 9.916345123 9.577372643 9.450622434 9.121702094 9.480185001 9.693845339 9.751089488 9.710326414 9.777977336 9.843682362 154277552 AceB Carbon cycling Carbon degradation others Ajellomyces capsulatus NAm1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 8.656942656 8.378118272 8.56826943 7.966340253 8.202040496 8.281237528 8.431068818 7.668642802 8.792237882 7.783829752 7.946724057 7.849958484 218289270 pstB Stress Phosphate limitation Alicyclobacillus acidocaldarius LAA1 8.563073472 8.612475342 7.905775387 7.905699431 8.338672965 7.942001161 7.710138795 7.964990136 112790712 pstS Stress Phosphate limitation Prochlorococcus marinus str. MIT 9303 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 9.133267638 9.208703418 9.480066798 8.722302953 8.6298172 8.299678242 8.404117152 9.077853363 8.618837574 9.390866761 9.350585922 9.21326301 157406171 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 8.727941822 8.360564203 8.340536119 8.545049539 8.275130658 7.437337204 8.288722644 8.245400669 8.686304854 7.91648764 7.922467138 7.70911853 213970036 AceA Carbon cycling Carbon degradation others Pseudomonas syringae pv. tomato T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 8.25440898 8.280977991 8.218697587 7.740520198 8.357233312 8.108100769 7.996605203 8.079740646 8.437204031 153004092 CopA Metal Resistance Copper Anaeromyxobacter sp. Fw109-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 10.56038156 10.25192019 10.47418081 10.08588049 9.974213605 9.923838126 10.35593954 10.24834522 10.49952953 10.27142628 10.23287229 10.18855063 254516757 pilin virulence pilin gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.822951177 8.516985247 8.705974251 7.673490997 8.365445876 8.52065616 8.492223623 8.771319174 7.985424033 8.098075505 8.28103654 93357298 fnr Stress Oxygen stress Ralstonia metallidurans CH34 8.60198222 8.879973973 8.670607296 8.430596024 8.484543063 8.202951901 8.549038692 8.978306911 8.655021523 8.74935233 8.364186551 8.654397615 170654379 fnr Stress Oxygen stress Methylobacterium radiotolerans JCM 2831 8.604206608 8.809306716 8.230659469 8.299697524 8.338436761 8.771803663 7.837005789 8.627607865 8.281532425 8.186120144 8.564836307 144900991 glnA Stress Nitrogen limitation Magnetospirillum gryphiswaldense MSR-1 9.063797481 9.257093629 9.240344402 8.576181037 8.923151325 9.187898017 9.501195666 8.585879813 9.294301964 8.73797153 9.2269507 9.049459284 86136956 nasA Nitrogen Assimilatory N reduction Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.991170543 8.857069659 8.816650079 8.84578902 8.676385511 8.530068893 9.127222694 9.026265955 8.640419889 8.803741659 8.566975131 8.849123016 177842850 amyA Carbon cycling Carbon degradation Starch Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 8.391258097 8.031190156 8.14330191 7.674083512 7.297608879 7.610689443 7.797654906 7.482487881 8.115296263 7.310308158 7.285433617 7.713026034 119373905 glnA Stress Nitrogen limitation Paracoccus denitrificans PD1222 8.408182598 8.756518334 8.434528882 8.091308916 8.397641766 8.712440237 8.810112156 8.507231024 8.692880448 8.510896369 8.570555305 8.828983575 148259748 nitA Organic Remediation Aromatics Other aromatics Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 9.495117264 9.428385674 9.628838299 9.04961754 8.822105659 8.914162142 8.734508314 8.734098197 8.804512504 8.753288557 9.167531561 226940939 cap virulence capsule Laribacter hongkongensis HLHK9 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Laribacter;species:Laribacter hongkongensis; 9.512858706 9.410581976 9.602330629 9.215888876 9.444486616 9.202835306 8.769820485 9.143481996 8.902405287 9.147351292 9.028511235 9.202713999 269219424 sigma_70 Stress Sigma factors Actinomyces sp. oral taxon 848 str. F0332 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 848; 8.773453696 8.889827593 8.674678391 8.148634522 7.950262771 8.51583672 8.533553281 8.06181664 8.371592156 8.234660165 8.353852542 8.229784642 260861585 ahpF Stress Oxygen stress Selenomonas sputigena ATCC 35185 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sputigena; 10.36594159 10.1491049 10.07547327 9.887950719 9.962325601 9.724825442 10.11058285 10.21292504 10.1180967 10.18227816 10.1612225 10.27706776 2329993 dsrA Sulphur sulfite reductase Desulfovibrio simplex superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 8.084131127 7.616048127 7.833311629 7.1756812 7.638919544 7.619354152 7.649350276 7.967804132 260888716 ahpF Stress Oxygen stress Selenomonas sputigena ATCC 35185 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sputigena; 9.492146385 9.407344142 9.33210173 8.966860873 8.589490166 8.984279479 9.330624614 8.961012053 9.236688307 9.082963243 9.335723621 9.351416636 239991996 proV Stress Osmotic stress Streptomyces roseosporus NRRL 11379 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces filamentosus; 9.158239122 8.895034313 9.161820015 8.603254712 8.985605364 8.894648978 8.835159079 8.650536119 8.766923194 8.507880029 8.659889032 8.793139135 91682132 SMR_antibiotics Antibiotic resistance transporter Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.912448855 8.90560085 8.263237767 8.376869233 8.806671374 8.704171807 8.513132884 8.611614096 70733269 ppk Phosphorus Phosphorus utilization Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 10.63027478 10.40638649 10.2305961 9.896452275 9.668760101 9.970827058 10.32416168 9.905461274 10.03294986 9.967002366 10.15374742 10.02962114 199590832 gyrB other category gyrB Lactobacillus rhamnosus HN001 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 8.480707997 8.570583878 8.653665878 8.037225353 7.783781506 7.765303731 7.394877685 8.464213981 7.631617031 7.927897499 8.14628757 110285254 MFS_antibiotic Antibiotic resistance transporter Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 8.206372554 8.122486631 8.176888847 7.978694379 7.86684555 7.964382982 8.262732273 8.265712285 8.085624691 254250433 pstB Stress Phosphate limitation Burkholderia cenocepacia PC184 9.470363048 9.395449928 9.065076632 9.047639833 8.863104297 8.705811424 8.95629387 8.763255624 9.167742558 8.729813551 8.869840533 8.723643791 207742911 pstA Stress Phosphate limitation Ralstonia solanacearum IPO1609 8.962076488 8.915240407 9.069374313 8.285211301 7.982070705 8.510276585 8.317539886 8.165816825 8.221048972 8.333017717 8.371922704 108462453 phtA Organic Remediation Aromatics Aromatic carboxylic acid Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 7.456577107 6.59745494 7.267578048 7.659352279 209420752 pmoA Carbon cycling Methane Methane oxidation uncultured methane-oxidizing bacterium superkingdom:Bacteria;phylum:Proteobacteria; 7.808087808 7.681377902 8.124351055 7.869068784 7.605372261 8.244595904 7.671542988 7.938563389 8.094929205 3445533 pheA Organic Remediation Aromatics Other aromatics Ralstonia sp. E2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 9.062136913 9.003540254 8.825459036 8.611115286 8.797219156 8.914858909 8.836603654 8.965792853 8.911408902 9.03001464 9.020397879 9.154329502 221729171 tfdA Organic Remediation Aromatics Chlorinated aromatics Diaphorobacter sp. TPSY superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax ebreus; 8.512105717 8.148561072 8.647015357 7.587910673 7.690410575 7.924712179 7.982885095 7.090491461 8.290921668 7.512170969 7.593401623 7.483106366 88864893 phn Organic Remediation Herbicides related compound Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 7.716991336 7.733835206 8.155708328 8.05555336 7.895427074 7.789829841 8.121353925 7.788324199 50541803 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.784893316 9.325387377 9.055385751 9.558880714 9.25957373 9.160596415 9.561202455 9.359401697 9.30306358 9.341067367 9.112196922 8.979632299 117922447 arcB Stress Oxygen limitation Shewanella sp. ANA-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 8.50314051 8.78102133 8.506080387 8.153574912 8.051170388 8.005918063 8.093737699 8.105678617 8.306764932 8.023940246 8.098559276 8.312311309 14026765 pcaG Organic Remediation Aromatics Other aromatics Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 8.635611416 8.494586796 8.778592977 9.086099806 8.837296896 8.569823694 8.841452652 8.951709494 8.833205258 8.640611993 8.397006331 8.500108559 29832350 TerD Metal Resistance Tellurium Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 8.537399844 8.327285257 8.335277548 8.601487376 8.63785352 8.981034508 8.55706657 8.663955374 8.437881614 8.685500598 8.07605902 148264601 phoB Stress Phosphate limitation Geobacter uraniireducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 7.827541463 7.8187545 7.840122123 7.297833909 7.769414758 7.673108293 7.638754989 7.972062152 7.525328325 152972032 TerC Metal Resistance Tellurium Klebsiella pneumoniae subsp. pneumoniae MGH 78578 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 8.12578515 7.990143227 8.424017125 7.422031502 8.144562037 7.950725485 8.052184725 7.87308582 8.535752275 7.758107203 7.57104123 7.848073241 117928303 glnA Stress Nitrogen limitation Acidothermus cellulolyticus 11B 8.42663365 8.516725008 8.445702461 8.301011666 8.518387535 8.283477187 8.253218445 8.298013394 8.312742963 8.146845569 8.365749037 7.81654346 228861756 dnaK Stress Heat shock Synechocystis sp. PCC 6803 8.263669702 8.225525262 8.364116234 7.832223542 7.824604586 7.733806807 7.744505983 7.676105521 7.946019804 7.953403385 7.703331707 7.816862037 88062432 dsrA Sulphur sulfite reductase uncultured Desulfohalobiaceae bacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae; 8.143219279 8.435433453 7.941430164 7.435902186 7.599453122 7.008530952 8.046217075 7.065008004 7.535130095 145410199 pstA Stress Phosphate limitation Caldicellulosiruptor saccharolyticus DSM 8903 8.617971358 8.709740849 7.943996054 7.730452437 7.795188902 7.50280979 7.051521739 7.433088502 7.210278998 7.736062558 86751065 CODH Carbon cycling Carbon fixation Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.885440413 8.414097419 8.326200342 8.185771258 8.322844814 8.135099536 8.535378194 7.827779039 8.595490023 8.106641402 8.100556159 8.254066689 257443791 sigma_70 Stress Sigma factors Campylobacter gracilis RM3268 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter gracilis; 8.732045483 8.651607801 8.826295105 8.276126535 8.270571856 8.283684676 8.615829016 8.646357879 8.601590124 229868384 mannanase Carbon cycling Carbon degradation Hemicellulose Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 8.014961745 8.037070115 119372765 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.64774844 8.621464371 8.696548636 8.478472979 8.52382534 8.062209775 8.32871087 8.522468419 8.601139383 8.479880238 8.351033219 8.599056227 163759009 nhh Organic Remediation Aromatics Nitoaromatics Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 8.480093658 8.281088737 8.657616426 8.431752475 8.378972872 8.127042045 8.356176389 8.717709305 8.466481453 8.569654797 8.285733273 8.603694055 239911062 ABC_antibiotic_transporter Antibiotic resistance transporter Thermococcus gammatolerans EJ3 8.202956928 8.267048261 7.489864789 7.278841325 7.142685906 7.40313895 7.407494427 7.471293558 7.49011426 149124661 linB Organic Remediation Pesticides related compound Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 8.672394191 8.803015964 8.632161894 7.895398946 8.175151836 8.408537767 8.715233869 7.817589761 8.658699865 8.321144349 8.39314935 8.516591592 209963494 nagK Organic Remediation Aromatics Aromatic carboxylic acid Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 9.440643863 9.164841438 9.17014175 8.853260596 8.637140316 8.773641223 9.076228648 8.533130417 9.007312995 8.766371902 8.908049378 8.83860367 212171354 alkB Organic Remediation Other Hydrocarbons Alcanivorax borkumensis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 8.042562216 8.14692838 8.478887439 7.646469597 7.754121479 7.660344019 7.054103671 6.942231847 7.727316933 7.554151818 7.496134389 7.74171697 194367182 iro virulence Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 8.881899404 8.450583414 8.528491453 8.921710031 8.509391288 7.99046473 8.640364457 8.700598797 8.721852131 8.561260391 8.454118614 8.198844293 114571329 obgE Stress Radiation stress Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 8.820651403 8.779250033 8.847571787 8.996060753 8.560834675 9.001096683 9.12247747 8.741107501 9.328738532 8.637802581 8.492374028 8.464370122 113871488 mer Metal Resistance Mercury Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 9.337211788 8.806786066 8.745583637 8.680257848 8.660774281 8.652930351 8.639711144 8.999058044 8.734820194 8.919102609 8.8289037 9.005393088 282860580 sigma_24 Stress Sigma factors Streptomyces sp. ACTE superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.460917397 8.383894092 8.597415684 8.378084356 8.35432557 8.600166905 8.629143066 8.536687777 8.908432496 8.270422882 8.266836252 8.412058917 237624922 sigma_70 Stress Sigma factors Thauera sp. MZ1T 8.834713502 8.71895895 8.768156664 8.688183355 9.094403237 8.902043263 8.652429707 8.672867089 8.425391074 8.520754676 8.501572812 8.684702697 121998984 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 10.39913274 10.23726739 10.0579736 9.344692865 10.20393804 10.08060943 10.3181858 8.896120027 10.52619132 9.598268263 9.855923036 9.769318285 187425490 ppx Phosphorus Phosphorus utilization Akkermansia muciniphila ATCC BAA-835 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Akkermansia;species:Akkermansia muciniphila; 9.091706855 8.995703445 9.107673956 8.450774631 8.517810717 8.413170402 8.70302797 8.551288087 8.421264459 8.508163782 8.448585556 8.786607397 89201527 ZntA Metal Resistance Zinc Bacillus cereus subsp. cytotoxis NVH 391-98 8.821170029 8.585644167 8.840384446 8.377582743 8.235485204 8.203640109 8.239353148 7.847296538 8.039659334 8.048729202 8.196640552 238028527 pilin virulence pilin Burkholderia glumae BGR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia glumae; 9.169426116 9.281310104 9.229417377 8.56197423 8.725031955 8.763403067 9.420364555 8.911047103 9.498268194 8.598680192 8.721388653 8.708829886 110630580 nifH Nitrogen Nitrogen fixation uncultured soil bacterium superkingdom:Bacteria; 8.521434253 8.500159191 8.535268091 8.179277544 8.183984948 8.13152028 8.030687452 8.197509565 8.227084071 8.084442433 8.057541885 8.251203282 218757101 proV Stress Osmotic stress Desulfovibrio vulgaris str. 'Miyazaki F' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 9.745885604 8.942876838 9.235086974 9.549160991 9.460239273 9.218434511 9.222604711 9.298535287 9.133709163 9.397162938 9.471718708 8.916542092 182382476 narG Nitrogen Denitrification uncultured bacterium 8.559378863 8.361204087 8.436712792 7.998616788 8.068802372 8.488589637 8.075075733 8.687475884 8.062093262 8.037162132 7.856381886 88922411 pcaG Organic Remediation Aromatics Other aromatics Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 8.220336788 8.044623382 7.734982379 7.792735977 8.053885222 8.12605037 8.208285741 8.088275435 8.010418018 88789809 AceA Carbon cycling Carbon degradation others Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 8.604865004 8.696752812 8.924750937 8.192151653 8.061115676 8.136671828 8.110933769 7.94000295 8.104785529 7.952875599 7.894262596 8.103575057 30138882 alkK Organic Remediation Others Nitrosomonas europaea ATCC 19718 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas europaea; 8.353023146 8.226796971 7.401221404 7.458106369 7.600037464 7.596455128 6.778694006 7.349557387 7.351699099 7.560833812 95114212 alkB Organic Remediation Other Hydrocarbons Gordonia sp. Cg superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 9.960623976 10.00916125 9.606916041 9.144917998 9.928187312 9.907706779 9.931952794 9.928825284 9.45005701 9.947340307 9.455535862 67159150 nmoA Organic Remediation Aromatics Nitoaromatics Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 8.836450638 9.003706421 9.091208129 9.288655852 8.92725968 8.746679771 9.204757675 9.239320264 9.068981552 9.171377577 9.069813336 9.071562888 119401893 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 8.804177875 8.996025807 8.811519004 8.48127534 8.355573494 8.379474728 8.818565769 8.445496009 8.487504035 8.550800645 8.335430185 77637901 CopA Metal Resistance Copper Alkaliphilus metalliredigenes QYMF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus metalliredigens; 9.073114968 9.074697019 9.131797159 8.535338158 8.589621597 8.434306097 8.440007486 8.170876087 8.507059841 8.006601212 8.145229961 8.582915994 29605259 catechol_B Organic Remediation Aromatics Other aromatics Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 9.463487755 9.496161625 9.531836626 8.617792194 8.61735761 8.719076305 8.856248798 8.440731261 8.961497072 8.530758902 8.388407095 8.711764911 86141195 gyrB other category gyrB Flavobacterium sp. MED217 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Leeuwenhoekiella; 8.397391431 8.505023226 8.128552179 7.967609741 8.033017076 8.281389536 8.252086035 7.792429604 8.178890071 8.147895939 7.7348179 150028091 SMR_antibiotics Antibiotic resistance transporter Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 8.427497657 8.60455704 8.610012424 7.93479852 8.091670914 8.214400764 8.118720254 8.047615792 8.303210253 8.289753646 8.064075103 8.097404022 62003541 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.394637408 8.450720601 8.373122295 7.924175272 7.352336201 7.826195873 8.304470263 7.932404297 7.429234174 7.499858791 7.699709353 156744289 AceB Carbon cycling Carbon degradation others Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 8.537910423 8.669602504 8.854542984 8.467885626 8.591984768 8.455734611 8.422152823 8.723291017 8.670050001 8.538754731 8.549644484 8.615277136 139003137 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.736202187 8.4522431 8.8685503 7.863011179 7.781184246 7.981670571 7.981728774 7.677105969 8.259127001 8.084868772 8.015156602 7.839016805 110347324 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 8.716447806 8.452855761 8.434842447 8.170143074 8.119747795 7.941115363 7.540060442 7.691803826 8.001517943 7.850919248 7.93656495 93005814 ureC Nitrogen Ammonification Psychrobacter cryohalolentis K5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter cryohalolentis; 7.046741918 7.035022712 7.001951445 7.218674261 225378063 obgE Stress Radiation stress Roseburia inulinivorans DSM 16841 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia inulinivorans; 9.294304571 9.047454584 9.042906958 8.740536032 8.642933677 8.545580481 8.731896127 8.661289749 8.812921359 8.75060975 8.661088383 8.668585875 66573474 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Xanthomonas campestris pv. campestris str. 8004 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 9.286685657 9.464613733 9.14726619 9.235996026 9.332293531 9.297479267 8.877094492 9.540392229 8.894631505 9.473853738 9.616430231 9.087848193 160891311 CopA Metal Resistance Copper Bacteroides uniformis ATCC 8492 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides uniformis; 8.607746759 8.316442692 8.536712174 8.503148613 8.590794763 8.464562878 8.645692448 8.471781844 8.235109685 8.313514179 8.453100104 8.29051289 91978107 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.682651167 9.032573773 8.910484863 8.696776477 9.058853928 9.237496091 9.402363253 9.480979222 9.124665553 9.590461587 9.529291603 9.607587808 153947792 dmsA Organic Remediation Others Yersinia pseudotuberculosis IP 31758 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia pseudotuberculosis; 8.601242066 8.804172844 8.725899726 8.288162196 8.870653663 9.173321548 8.8469631 8.973536533 8.960405569 8.688465645 8.692800757 74422036 AceA Carbon cycling Carbon degradation others Nitrobacter winogradskyi Nb-255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 9.517968256 9.192296635 9.354315661 9.104228587 8.863604835 8.811026366 8.979985604 8.875956639 9.0366098 8.915246676 8.820301315 8.961976377 27657632 chnC Organic Remediation Other Hydrocarbons Rhodococcus sp. Phi2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7.901593862 8.470365386 7.774767182 7.802520205 7.587499997 7.320478 7.846331243 7.750512651 7.743200823 7.74736181 7.934139214 89337642 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium flavescens PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 9.414891003 9.37777349 9.377778777 9.390792717 9.189294811 9.129117653 9.109502592 9.355886773 9.347118963 9.31296688 9.277448168 9.375170894 254984242 Tet Antibiotic resistance other Geobacter sp. M18 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 9.163664205 9.116057034 8.935032017 8.092576566 8.931254125 8.949658869 8.798000022 8.942646391 8.704078939 8.919551699 8.93323847 91698082 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 8.610044705 8.777579781 8.499728987 8.374778892 8.064095164 8.411601823 8.659653783 8.391085573 8.598849309 8.677985816 8.451949221 116748519 silC Metal Resistance Silver Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 9.080217442 9.060281845 9.120950073 8.791980469 8.508960099 8.541788432 8.591398136 8.548220478 8.462960695 8.548039709 8.301484046 8.71740801 261414758 obgE Stress Radiation stress Fibrobacter succinogenes subsp. succinogenes S85 superkingdom:Bacteria;phylum:Fibrobacteres;class:Fibrobacteres;order:Fibrobacterales;family:Fibrobacteraceae;genus:Fibrobacter;species:Fibrobacter succinogenes; 7.73921732 7.326249433 7.236227592 7.327850199 7.216706853 145216163 TehB Metal Resistance Tellurium Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.356821336 8.316690429 8.291536582 8.23543271 8.04076101 8.2736106 8.266216346 8.277468777 8.365328484 8.208512441 7.931831087 148259577 MFS_antibiotic Antibiotic resistance transporter Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 10.03836593 9.978176879 9.962895282 9.109483803 9.090390603 9.06019071 9.357870251 9.059225707 9.488048477 9.182998897 9.12491005 9.285527024 119857542 vdh Carbon cycling Carbon degradation Others Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.398138806 7.995200634 8.155836029 7.933655233 7.692783952 7.625852775 7.875862384 7.733620177 7.622896247 7.818332874 7.9418535 196110859 pilin virulence pilin Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 8.985002715 9.121392248 8.766553983 8.187570089 8.43537408 8.680744034 9.208879569 8.597295112 187484288 amyA Carbon cycling Carbon degradation Starch Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 9.132853936 9.135785228 9.138587114 8.077685051 8.421903318 8.965350769 9.370673614 8.161448328 9.207823652 8.427629631 8.576113564 8.792312402 224824856 glnA Stress Nitrogen limitation Lutiella nitroferrum 2002 10.39313382 10.50202299 10.16588292 9.335634994 9.311187261 9.413169547 9.053600026 9.66261069 9.467351331 9.696323306 9.711452618 167946096 hrcA Stress Heat shock Endoriftia persephone 'Hot96_1+Hot96_2' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Endoriftia;species:Endoriftia persephone; 9.315544198 9.54774735 9.285168489 9.441963403 9.39131845 9.38404303 9.396775107 9.869055724 9.177377874 9.577804774 9.53684708 9.092087667 194099230 cadBD Metal Resistance Cadmium Neisseria gonorrhoeae NCCP11945 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria gonorrhoeae; 8.158118546 8.01995561 8.151802229 7.436759728 7.450840292 7.325357668 7.033748193 7.015587608 7.513333812 152974209 endochitinase Carbon cycling Carbon degradation Chitin Bacillus cereus subsp. cytotoxis NVH 391-98 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cytotoxicus; 8.14959112 8.384411172 8.286364033 7.655008408 7.747551128 7.381464836 7.178400434 7.293296226 7.578784504 55231410 glucoamylase Carbon cycling Carbon degradation Starch Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 8.535044845 8.713893418 8.969993106 8.406209432 7.790363756 8.543859496 8.707575624 8.238791099 8.236127234 8.216813712 8.347724924 8.391228655 83654419 iro virulence Burkholderia thailandensis E264 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 8.373085101 8.513305481 8.617129291 8.290001575 7.941959605 7.990874966 7.765495353 8.331140173 8.390243015 8.288289769 8.183706489 8.402648604 29466078 norB Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.613965718 8.586924197 8.810830399 8.230085635 8.272492702 8.240946725 8.595112421 8.263171306 8.768794334 7.78326402 8.117385506 7.874759666 254439748 pstC Stress Phosphate limitation Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 8.506718722 8.065005798 8.218520799 8.170802524 8.079441299 7.567708079 8.272303589 7.986856638 7.763364525 8.392691906 121588645 sigma_24 Stress Sigma factors Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 8.484459672 8.533217347 8.319663457 8.588877357 8.676548444 8.575376829 8.849377685 8.595614008 8.647213929 8.278112331 8.448295939 8.372832965 88815516 AceA Carbon cycling Carbon degradation others marine actinobacterium PHSC20C1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 7.627816216 7.98970338 8.090170674 8.080216075 7.824347354 8.195130726 7.661873888 7.972549493 7.855261277 76261091 TerC Metal Resistance Tellurium Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 7.413236699 7.868607158 116175452 grpE Stress Heat shock Natrinema sp. J7 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natrinema; 8.308707281 8.177464153 8.207667146 7.449163956 7.643318042 7.977185387 8.215269487 7.419140241 8.64883481 7.550744001 7.638922693 7.814195589 162284383 AceA Carbon cycling Carbon degradation others Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 8.477960962 8.568204654 8.714540157 8.477979242 8.585999346 8.65581399 8.504936912 8.879551485 8.611760711 8.749361784 8.92032375 8.883547413 167346665 pstS Stress Phosphate limitation Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.070878252 8.063964523 8.171658876 8.338509759 8.154467674 8.194283017 7.794475058 8.042264633 8.187415396 8.103280312 8.15857534 7.729492879 133913605 exaA Organic Remediation Chlorinated solvents Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 9.195314362 9.265198082 9.313993607 8.85941761 8.811588271 8.671161129 8.593112203 8.745879042 8.803310054 8.93258944 8.950711108 9.09307365 88184155 endochitinase Carbon cycling Carbon degradation Chitin Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 8.417882396 8.648229293 7.8041297 8.209250339 8.635410014 7.366065652 8.464078556 7.717179757 8.12401531 237785400 ureC Nitrogen Ammonification Corynebacterium kroppenstedtii DSM 44385 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium kroppenstedtii; 9.246290947 9.204502019 9.301051383 9.158633545 8.967481814 8.729793395 8.760948366 9.140702311 8.936463261 9.00229207 8.960322269 9.129057314 83317086 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.28574564 8.431149142 8.350974472 7.702923375 7.754742401 8.196640942 8.102719939 8.095649401 8.313707934 7.948618223 7.706485329 7.949581625 240102850 pstB Stress Phosphate limitation Thermococcus gammatolerans EJ3 8.742215849 8.388926467 8.723503207 8.240270346 8.065921211 7.955656378 8.146977388 8.229231544 8.100903826 7.850253974 8.10841006 197758002 AceA Carbon cycling Carbon degradation others Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.605016894 8.376532992 8.525337989 8.549319816 8.603606019 8.46753327 8.40700496 8.984660396 8.065796698 8.591918811 8.859402881 8.507817073 162568573 aoxB Metal Resistance Arsenic uncultured bacterium superkingdom:Bacteria; 9.454157832 9.536178646 9.303222588 9.676752219 9.624034518 9.251351675 9.836617339 9.617237676 9.520353145 9.512415972 9.647833194 9.174760032 68199188 xylA Carbon cycling Carbon degradation Hemicellulose Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.394449997 8.093513053 7.972419784 7.928718189 8.29022212 7.776908777 8.551153971 7.958222474 8.176098824 8.389821013 7.991361244 71018739 nitA Organic Remediation Aromatics Other aromatics Ustilago maydis 521 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Ustilaginomycetes;order:Ustilaginales;family:Ustilaginaceae;genus:Ustilago;species:Ustilago maydis; 9.073622029 9.276132717 8.819952646 8.169916496 7.91542099 7.926734844 8.076128439 8.142458075 7.900448068 8.462457061 8.139704573 7.911555684 16126009 AceB Carbon cycling Carbon degradation others Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 8.511031201 8.786610664 8.828037691 8.1169554 8.453545516 9.021843991 9.175295068 8.669604002 9.054182633 8.800047338 8.608464011 8.829064733 159883959 amyA Carbon cycling Carbon degradation Starch Schizosaccharomyces pombe superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Schizosaccharomycetes;order:Schizosaccharomycetales;family:Schizosaccharomycetaceae;genus:Schizosaccharomyces; 9.380936451 9.408231508 9.179956478 9.058918863 8.801602113 9.259747561 9.551492038 9.266226047 9.182484943 8.844634018 8.930381627 8.886273783 192359172 cda Carbon cycling Carbon degradation Starch Cellvibrio japonicus Ueda107 7.996873093 7.999325819 8.344789235 7.29120854 7.188059349 7.349658947 7.339593652 6.694414302 7.851708087 7.021605727 7.134430177 254985247 cytochrome Energy process Energy process Geobacter sp. M18 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.434177185 8.580926072 8.207413769 8.013360859 8.233587409 7.950749191 8.113158021 7.901832305 8.190136402 8.163398794 8.443261577 116073370 sigma_70 Stress Sigma factors Synechococcus sp. RS9916 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.123399982 8.247354608 8.568723949 8.567573848 8.588538803 8.721078091 8.447951836 8.958559955 8.670063297 8.868542049 8.920039692 8.951202666 113530663 nmoA Organic Remediation Aromatics Nitoaromatics Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 9.631999481 9.651758687 9.250376928 8.882312485 8.735013117 9.274142279 9.849427585 9.245283337 9.419946826 9.086532265 9.193175134 8.863557102 112464169 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.279871279 7.381223388 7.31552707 6.992428118 7.371164688 7.787626896 7.192703164 7.304111043 149950609 sigma_70 Stress Sigma factors Alkaliphilus metalliredigens QYMF 8.669876115 8.572439683 8.48845025 8.918080039 8.886902917 8.838714166 8.466545789 9.062518831 8.525237029 8.84994243 8.789322762 8.938813909 260215365 obgE Stress Radiation stress Cronobacter turicensis z3032 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter turicensis; 7.620439633 7.498647475 7.233939062 6.981447206 7.597952448 7.033191286 6.924502339 157915038 CopA Metal Resistance Copper Salinispora arenicola CNS-205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 8.963608562 9.064734948 9.229639924 9.107532501 8.998185858 8.248483489 8.979089234 9.567833279 9.106617789 9.394959322 9.285071418 9.531149939 219869268 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 9.623662693 9.897294713 10.08458464 10.10748784 10.04592255 9.613575331 10.05936217 10.29744054 9.960518301 10.227385 9.954925052 10.01372595 75992425 flnB Organic Remediation Aromatics Polycyclic aromatics Terrabacter sp. DBF63 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Terrabacter; 8.310293978 8.102408124 7.785253851 7.909589381 8.036665551 8.050641643 7.936149517 8.422672403 7.90531196 238795928 nrfA Nitrogen Dissimilatory N reduction Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 9.093634133 9.065723145 8.841971519 8.606747865 8.45453128 8.285414403 8.409856965 8.326821949 8.338368742 8.201857614 8.470766483 154174924 obgE Stress Radiation stress Campylobacter curvus 525.92 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter curvus; 10.24716339 10.14430901 10.19090868 9.801634934 9.735166581 9.614369041 9.778306864 9.346245633 10.08952852 10.07012389 10.17152641 10.05462258 3387795 pcpE Organic Remediation Herbicides related compound Rhodococcus opacus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.861914116 8.499268476 8.735010817 8.262185726 8.356789967 8.067146811 8.111006984 8.084544128 8.162456122 8.09022132 8.335739265 167074361 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.52100172 8.67879607 8.477575126 8.401707019 8.012441462 8.267905242 8.057734676 8.171252444 8.301688278 8.136822206 8.064631585 8.471976132 119896456 phoB Stress Phosphate limitation Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8.226187372 8.153666634 8.465521205 8.459171423 8.484423818 8.503533035 8.336041819 8.942594856 8.163702959 8.643463941 8.862991856 8.237430095 221564345 ChrA Metal Resistance Chromium Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 9.078192014 9.049873009 9.229000475 8.756336515 8.439465035 8.55966854 8.657299962 8.343941855 8.939255297 8.709468659 8.941101348 8.86719235 3372145 nifH Nitrogen Nitrogen fixation Trichodesmium sp. IMS101 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Trichodesmium;species:Trichodesmium erythraeum; 7.121372933 7.451575285 118443212 TerD Metal Resistance Tellurium Clostridium novyi NT 8.461635456 8.163309539 8.478480195 7.708910805 7.739714581 7.732154479 7.444847298 7.326180052 8.002440206 7.328080942 7.560325594 7.72988924 134100403 pimF Organic Remediation Aromatics Aromatic carboxylic acid Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 9.00703781 9.025697814 8.902351947 8.622492488 8.933408994 9.413699553 9.52944651 9.050818802 9.398656687 9.220578201 9.155519124 9.116504861 221084226 tfdA Organic Remediation Aromatics Chlorinated aromatics Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 8.58136662 8.587661187 8.440558877 8.07056539 7.84195309 7.852509789 8.392436755 8.101121909 8.458159252 7.890870305 7.986474145 7.865400515 217503305 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 8.719825433 8.64134834 8.937635964 8.519822133 8.435073843 8.418123353 8.177090574 8.465524692 8.473145028 8.356455069 8.444977843 8.416025271 163800766 SMR_antibiotics Antibiotic resistance transporter Vibrio campbellii AND4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 9.376168537 9.130647198 9.297802712 8.395492927 8.925929328 8.977463074 9.254773161 9.179434649 8.962109915 9.576827429 9.575563476 9.472283603 90305607 ZntA Metal Resistance Zinc Coccidioides immitis RS 9.220779795 9.458016294 9.30510024 9.105001164 8.844442571 9.155473721 9.681710021 9.465126791 9.062334357 9.368226791 9.338106543 240279545 amyA Carbon cycling Carbon degradation Starch Ajellomyces capsulatus H143 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 8.75298262 8.210782638 8.482506621 8.261622028 7.905518954 8.506646393 8.490665345 8.733743513 8.445877482 9.10774104 9.206716924 8.864028022 12802200 mcrA Carbon cycling Methane Methane production uncultured archaeon 85A superkingdom:Archaea; 8.296426279 8.208071101 8.118968895 8.09828396 8.112057258 7.741838811 8.0768618 8.223172821 8.219817796 8.226939923 8.346981152 152964803 ureC Nitrogen Ammonification Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 9.00299012 9.009071093 8.727752639 8.481171763 8.836138701 8.952735425 9.091065061 9.067824003 8.820761073 9.214128666 9.12432939 8.905490432 19548129 nirS Nitrogen Denitrification Azoarcus evansii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8.42505923 8.352351695 8.36747547 8.130233565 7.868689559 7.90490277 8.173325005 7.607770968 8.245178784 7.745373802 7.626153859 7.814768819 110282867 pstB Stress Phosphate limitation Cytophaga hutchinsonii ATCC 33406 8.052463166 7.941696722 8.029098453 7.173713934 7.079584523 6.906633559 6.959703978 196477390 pstA Stress Phosphate limitation Phenylobacterium zucineum HLK1 9.560760475 9.138910574 9.013412306 9.439528524 9.128396406 8.939270516 9.455378716 9.388368087 9.18122999 9.29583772 9.250913619 9.091484825 50121922 cydA Stress Oxygen limitation Pectobacterium atrosepticum SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 10.14387403 9.926282903 9.558990714 10.43222302 10.48956116 10.60675227 9.974077042 10.62637384 10.03185222 10.63017987 10.83313015 10.02053825 196221990 sigma_24 Stress Sigma factors Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 8.650087767 8.266910535 8.452401699 8.064402231 7.714795404 8.377115197 8.178729726 8.207464334 7.862646322 8.140081022 8.187531994 91690259 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 9.034508014 8.31511217 8.391923782 9.622957243 9.593740211 9.193609702 9.552664356 9.418181153 9.106319318 9.247536803 8.920754396 9.015965361 214031264 phoB Stress Phosphate limitation Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8.381032888 8.264124634 8.272499864 8.259931873 8.273382094 8.576010677 8.414854694 8.486851456 8.612505449 8.361017246 8.683797217 8.284976262 85858341 ZntA Metal Resistance Zinc Syntrophus aciditrophicus SB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Syntrophus;species:Syntrophus aciditrophicus; 9.0790792 8.927243572 9.142214391 8.54228244 8.383132427 8.477802033 8.092503934 7.921157664 8.55054027 8.041739237 8.20221748 8.531886626 26990911 iro virulence Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 9.82760309 9.55511176 9.591894395 9.403614644 9.613861667 9.821772356 9.500358118 9.823075256 9.410080207 9.644783474 10.02466746 9.699147318 15806552 pcc Carbon cycling Carbon fixation Deinococcus radiodurans R1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 8.537933608 8.499082729 8.548973871 8.423393074 8.095792016 8.308751229 7.922442616 7.853858568 8.518446425 8.134515474 8.074716914 8.292865114 254390209 oxyR Stress Oxygen stress Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 9.449205139 8.692021502 8.905718819 9.020843531 8.770221126 9.026259236 8.88718205 8.626462199 9.069863199 9.09547091 8.575361862 197719682 MFS_antibiotic Antibiotic resistance transporter Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 9.944928651 10.08861732 10.20409222 9.571328078 9.387522653 9.521385193 9.601437919 9.423984228 9.410906472 9.650687323 9.791401274 9.677293778 56809511 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.09670875 8.01287316 7.040412518 6.955472522 6.669921348 7.422210538 6.777043979 6.68779758 7.258461073 91691628 MFS_antibiotic Antibiotic resistance transporter Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.660568054 8.85023575 8.688334136 8.703626298 8.908900946 8.400932926 8.822385866 8.668162638 8.703711207 8.888399228 8.58597831 148259399 capsular_polysaccharide_biosynthesis_protein_EPS Bioleaching EPS Acidiphilium cryptum JF-5 8.819683314 8.802045816 8.847186353 8.551605067 8.542361659 8.407716036 8.463607916 8.376987045 8.533835351 8.29058194 8.333138099 8.359065822 210074349 nitA Organic Remediation Aromatics Other aromatics Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 8.78778392 8.884097512 8.166400077 8.370013346 8.343956579 8.545733622 8.500506845 8.982404228 8.618383715 8.370685198 240170912 obgE Stress Radiation stress Mycobacterium kansasii ATCC 12478 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 8.692976191 8.673568636 8.689706211 8.147421333 8.24456005 8.077396808 8.121785235 8.008120236 8.216970171 8.057805773 7.955849065 8.218743129 220711428 tfdA Organic Remediation Aromatics Chlorinated aromatics Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 9.068990144 8.94273999 8.842448359 8.966283089 9.041663158 8.607477953 9.27541819 9.267089338 9.329244672 9.116124546 8.887795698 9.208306837 87135756 grpE Stress Heat shock Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 8.876076356 8.698760827 8.652059669 8.626453241 8.760254752 8.547493952 8.59487348 8.771167557 8.870679876 8.758482559 8.881231676 8.900471719 257780434 sigma_24 Stress Sigma factors Desulfotomaculum acetoxidans DSM 771 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum acetoxidans; 8.225489971 8.56335822 7.908336846 7.589950122 7.617471723 7.547313579 7.584714632 7.760037956 7.767795906 7.775010256 7.928687201 90202433 limEH Carbon cycling Carbon degradation Others Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.681318661 8.784285568 8.91067412 8.954378869 8.948437325 8.904060714 8.979320234 9.059820488 8.748684402 8.962315917 8.826809424 8.683223193 171059256 grpE Stress Heat shock Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 8.173678847 8.016494704 7.498171843 7.395038141 7.740633548 7.933596149 7.531682783 8.149945699 7.473099955 7.510742511 7.642437075 126636778 gyrB other category gyrB Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 8.1572815 8.132460776 7.602639181 7.655643288 8.012662065 8.014477308 7.627671863 8.045927765 7.697346353 7.3806059 7.398833389 113524980 phdCI Organic Remediation Aromatics Polycyclic aromatics Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.596796937 8.439143574 8.502369831 7.731561192 7.605069279 7.910498916 7.831160788 7.597161969 7.690436258 7.496739623 7.803970979 242782805 AceB Carbon cycling Carbon degradation others Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 8.625148411 8.538826826 8.770467841 8.51121454 8.385035368 8.217569695 8.031826447 8.384905073 8.40366463 8.29144537 8.123338843 8.344960396 119693872 Catechol Organic Remediation Aromatics Other aromatics Mycobacterium sp. KMS 8.613657481 8.985776921 8.721659177 7.740023161 8.119124535 8.335329344 7.822825012 8.18300247 7.993967304 8.077206639 148556156 mauAB Organic Remediation Herbicides related compound Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.320041451 8.280840565 8.021279501 8.497660827 8.612279644 8.593486358 8.450961079 9.181976077 8.091707084 8.730456785 8.838025432 8.640918694 45185954 AceB Carbon cycling Carbon degradation others Ashbya gossypii ATCC 10895 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Eremothecium;species:Eremothecium gossypii; 8.475222803 8.347831926 8.313135061 8.115397605 7.90107476 8.141738168 8.470506147 8.497046348 8.743838815 8.421621057 196185559 hrcA Stress Heat shock Brevundimonas sp. BAL3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas; 8.740057362 8.536622607 8.540071953 8.781143959 8.340127451 8.122268881 8.440752519 8.562017582 8.412949411 8.488779658 8.330558758 8.092049167 254980893 pstB Stress Phosphate limitation Nitrosomonas sp. AL212 8.626423334 8.372090205 8.469734123 7.999001146 7.899143258 7.936386488 7.866970466 7.791101008 8.439017664 7.680770284 7.697252167 7.988905084 239799671 fnr Stress Oxygen stress Variovorax paradoxus S110 8.457201947 8.341239353 7.799766474 7.595846136 8.120693821 8.327674471 7.854184279 8.364010766 8.068032952 8.185766837 8.194419704 256675573 glnA Stress Nitrogen limitation Streptomyces sp. SPB78 9.692240582 9.629592556 9.479471345 10.02403586 9.966449079 9.189431516 9.89433558 9.849253889 9.590486197 9.82145677 9.660603229 9.36515886 226090499 obgE Stress Radiation stress Gemmatimonas aurantiaca T-27 superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 8.575559259 8.439180081 8.560139159 8.054052952 7.987797009 7.945604876 7.691417353 7.937168138 8.142151592 7.840606685 8.160347006 84786792 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Erythrobacter litoralis HTCC2594 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 8.689466569 8.429572031 8.35595922 8.046209532 8.238300297 8.313430943 8.462517335 7.630797185 8.14634162 8.208348806 8.08289594 39935130 nosZ Nitrogen Denitrification Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.273540335 8.110491034 8.321405792 8.241296245 8.159140334 7.909752779 8.079698683 8.591800888 8.470224206 8.505199475 8.511730963 8.334105521 254560246 ureC Nitrogen Ammonification Methylobacterium extorquens DM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 9.293313144 9.476784378 9.562631004 9.363053632 9.194590241 9.200405787 8.881968495 9.146840467 8.805773518 9.083017368 9.098719396 9.367699418 83700330 gyrB other category gyrB Phenylobacterium lituiforme superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium; 8.547536165 8.336312749 7.624990527 7.806675275 8.1560639 8.588169787 7.877618646 8.634948205 8.143478662 8.143320407 7.83947392 238749338 phoA Stress Phosphate limitation Yersinia rohdei ATCC 43380 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia rohdei; 8.381485164 8.30639102 8.085508919 8.160105107 8.075013183 7.414771733 8.017113521 8.082145279 8.047118383 7.83630311 8.302559992 227163910 ppk Phosphorus Phosphorus utilization Proteus mirabilis ATCC 29906 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 8.80825242 8.450467845 8.769417097 9.041644468 9.164908119 9.139222671 8.76638582 9.279292141 8.660199933 9.045558887 9.117338706 9.027924567 221156740 pstC Stress Phosphate limitation Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 8.383824581 8.157449793 8.15371439 7.981639798 7.567737209 7.777491234 8.124814101 7.944164299 8.261024809 7.670326569 7.846629462 7.699889075 119355216 BchY other category chlorophyllide reductase Chlorobium phaeobacteroides DSM 266 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 8.926673086 8.764575302 8.272224994 8.021328067 8.036025173 8.036612984 8.247602637 7.836981668 8.201669387 8.32555812 124261284 xylJ Organic Remediation Aromatics BTEX and related aromatics Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 8.291283317 8.563429189 7.874813861 8.003017548 7.815624942 7.591599475 8.19957123 8.430525787 8.349665536 8.007265453 8.065704897 142852727 arcA Stress Oxygen limitation Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 8.577300529 8.404561802 8.54329189 8.290898852 8.041303182 8.086015549 8.432233549 8.150050449 8.66572941 8.168819765 8.261505518 8.065429025 71736321 TerD Metal Resistance Tellurium Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 8.622757012 8.433194163 8.552459992 8.074670478 7.886761721 8.154083093 7.856639565 7.832321441 7.629212165 7.817504383 7.517997541 8.082666971 260575751 glnA Stress Nitrogen limitation Rhodobacter sp. SW2 8.387498825 8.088857674 8.4706593 7.593527893 7.621061704 7.734375762 7.775495367 7.666561566 7.754335614 7.490627255 7.645309586 146302282 endochitinase Carbon cycling Carbon degradation Chitin Flavobacterium johnsoniae UW101 8.072148191 8.115218717 8.325431156 7.669695299 7.663422777 7.572439269 7.29550798 7.302946137 7.778692738 7.653431095 7.768301249 7.349662751 183981987 limEH Carbon cycling Carbon degradation Others Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 9.772437192 9.886469044 9.545682826 9.16609037 9.0321801 9.119540385 9.513981405 8.889582228 9.841322835 9.086753384 9.048373211 9.223730097 71402610 nasA Nitrogen Assimilatory N reduction Lyngbya aestuarii PCC 7419 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Lyngbya;species:Lyngbya aestuarii; 8.892924325 8.755571202 9.085747482 8.754502942 8.639989276 8.559945447 8.70816371 8.422489112 8.581171797 8.621957056 8.645722088 8.585590809 85723765 nrfA Nitrogen Dissimilatory N reduction Syntrophus aciditrophicus SB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Syntrophus;species:Syntrophus aciditrophicus; 9.665425186 9.704010579 9.748171064 9.028868239 8.97041199 8.916735235 8.658007795 8.489867496 8.757829642 8.487172592 8.842822053 9.175040901 148727162 endolysin_transglycosylase Bacteria phage LYSIS Aeromonas phage phiO18P order:Caudovirales;family:Myoviridae;genus:P2-like viruses; 8.644409947 8.698574856 8.795834771 8.00745714 8.329946339 8.463510727 7.153278577 8.441689461 7.569028422 7.788248602 7.698047163 71841657 nirS Nitrogen Denitrification Pseudomonas stutzeri superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 9.834299183 9.533626762 9.473937871 9.257348731 9.452636628 9.333702624 9.198957023 9.254442467 9.189930202 9.30526986 9.516673546 9.414215224 119459615 chnB Organic Remediation Other Hydrocarbons marine gamma proteobacterium HTCC2080 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.298560578 8.078989309 8.281008558 7.57711056 7.585291422 7.692689378 7.17264161 7.467001261 7.918784362 7.684810036 7.567872217 7.669012629 53757669 CopA Metal Resistance Copper Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 8.15425556 8.050985561 8.201340372 7.534832363 7.658389041 7.985329538 7.955707802 7.459441335 8.288699017 7.70007446 7.489321917 7.496000223 119669551 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 9.413825456 9.143728416 9.374696918 9.003940847 8.951225596 8.856785966 8.922817737 9.128036763 9.027713426 9.149175574 9.1163638 9.293795116 85827162 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.66162784 8.36196192 8.149839829 7.796479669 7.836206334 7.762211409 7.76210769 8.019663549 7.817418069 7.76384677 7.920300468 126650255 ureC Nitrogen Ammonification Bacillus sp. B14905 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 8.864634367 8.62843468 8.613067646 7.233717951 8.156941754 8.585528317 7.70544981 8.040423515 8.142498597 8.099033066 72160601 grpE Stress Heat shock Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 8.58670598 8.9397245 8.740733498 8.822187943 8.638770817 8.523385953 8.538464805 8.861813619 8.871632536 8.974304117 8.776798993 9.036760604 153005025 pcc Carbon cycling Carbon fixation Anaeromyxobacter sp. Fw109-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 8.578296345 8.801257818 8.452396458 8.918552699 8.790366748 8.627902372 8.66957874 8.744037729 8.691621817 8.701343408 8.873072775 8.41297191 219858510 amyA Carbon cycling Carbon degradation Starch Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 9.18350282 9.169817731 9.38197742 8.863690352 8.839541533 8.693955319 8.674240583 8.851990921 8.741888677 8.640566081 8.897308384 217506813 sigma_32 Stress Sigma factors Thauera sp. MZ1T superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 9.261116877 9.022176797 9.232480128 8.63162925 8.897206211 9.096817538 9.252585291 8.774306892 8.994422875 8.711917344 9.289206404 8.970704348 116750644 CopA Metal Resistance Copper Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 8.283354385 8.366819036 8.256558364 8.079345038 8.094300544 7.934472576 7.931457127 7.918324666 8.091429902 8.029679629 7.728888782 8.096225977 118069429 BADH Organic Remediation Aromatics Other aromatics Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 8.312415614 8.479033962 8.334543268 7.663547828 7.647951247 7.67872141 7.646923358 7.454274443 7.891605551 7.910023537 7.82782902 110824127 grpE Stress Heat shock Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 9.739166311 9.900217237 9.628126927 9.616096284 9.586548345 9.581670653 10.17946783 10.00498148 9.594398452 10.00180822 10.18883089 9.842256359 56550639 cnrA Metal Resistance "Cobalt,Nickel" Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.818492336 8.703140701 8.721807098 8.848506593 8.847490329 8.626143977 8.791733767 8.944486959 8.920334637 8.70124232 8.448514054 8.42487215 256827038 obgE Stress Radiation stress Cryptobacterium curtum DSM 15641 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Cryptobacterium;species:Cryptobacterium curtum; 8.230582201 8.060151436 7.151415401 7.660108494 7.110065624 169016035 amyA Carbon cycling Carbon degradation Starch Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 8.84850124 9.144013657 8.845672871 8.478180392 8.727765381 8.989994745 9.340204094 8.910557241 8.752691159 9.12269059 9.068815308 9.312989152 218521666 glx Carbon cycling Carbon degradation Lignin Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 8.647963237 8.691652704 8.573718063 8.425985672 8.571776365 8.572506285 8.349419397 8.611229592 8.753502803 8.520936295 8.844105086 8.627362135 146283646 grpE Stress Heat shock Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 8.740423751 8.446248045 8.553470864 7.874821254 8.336700272 8.470267693 8.539298133 7.389669248 8.854382145 7.690505234 8.064050597 7.827328221 115375191 endochitinase Carbon cycling Carbon degradation Chitin Stigmatella aurantiaca DW4/3-1 8.655286637 8.572382162 8.632470695 7.877659944 7.847687415 7.812836372 8.13800575 7.747212892 8.575455928 7.764462925 7.766570392 8.159345431 259165267 cspB Stress Cold shock Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 8.243731699 7.791407489 7.651346663 7.778520601 7.860502291 7.784639576 7.884475381 7.63911548 8.087294049 124265537 alkK Organic Remediation Others Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 9.144609436 9.032892523 8.990433683 8.814658847 9.11464663 8.387633341 8.286784672 8.665558467 8.576566823 8.840744914 8.737979851 8.920120721 118763178 tfdA Organic Remediation Aromatics Chlorinated aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.957715205 9.001281856 8.888517496 8.734113096 8.63714968 8.794474912 9.104786748 8.602171777 8.557299376 8.47071371 8.724730434 8.53543975 112822437 obgE Stress Radiation stress Haemophilus somnus 129PT superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Histophilus;species:Histophilus somni; 8.380064406 8.13353227 8.527071167 7.924673333 7.781282784 7.938275674 7.620846394 7.398704544 8.139392474 7.62395052 7.669679279 7.829595874 116812183 nifH Nitrogen Nitrogen fixation Clostridium sp. Kas107-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 8.443952176 8.156159303 8.48092965 7.79409072 7.644756396 7.652104542 7.387212961 7.29963545 7.957635719 7.472751268 7.358059897 7.730555717 241366775 pstC Stress Phosphate limitation Acidovorax delafieldii 2AN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax delafieldii; 11.12902651 11.15051284 11.51335698 11.11950602 11.07417617 10.83262816 10.95441706 10.84283474 11.20664625 11.18006543 11.10003519 11.18571909 217987270 ChrA Metal Resistance Chromium Bacteroides eggerthii DSM 20697 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides eggerthii; 8.058801631 7.763495852 7.327785483 7.340033548 7.528183109 7.183872923 7.245803207 7.662195117 7.441965326 7.359934081 7.198895305 18558988 nirS Nitrogen Denitrification uncultured temperate forest soil bacterium superkingdom:Bacteria; 9.067661506 9.133883444 9.099500283 8.265976732 9.083468287 9.199821381 9.230232127 9.070653026 9.3136444 8.869718555 8.795962547 9.009630244 142850872 CorC Metal Resistance Cobalt Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 8.924232291 9.173154286 9.370485084 8.935760697 8.948647088 8.8239148 9.295860355 8.830318428 9.376191191 8.819719608 8.456296806 8.718252223 72527927 lysin Bacteria phage LYSIS Coliphage K1F order:Caudovirales;family:Podoviridae;genus:T7-like viruses; 7.542084566 7.704832322 7.118471279 7.458614656 7.079856845 7.71420622 7.121464919 7.344620468 41396510 linB Organic Remediation Pesticides related compound Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 9.009308988 8.751965965 8.572610423 8.670767021 8.73079322 8.869217666 227099120 pstB Stress Phosphate limitation Geodermatophilus obscurus DSM 43160 9.137340052 9.060833194 8.740064028 8.663896497 8.760892417 8.616798411 8.751660446 8.590060687 8.639217766 8.83935656 13093634 tfdA Organic Remediation Aromatics Chlorinated aromatics Mycobacterium leprae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.2343085 8.353546126 8.497274701 7.472016708 7.383629395 7.772897424 7.543480809 7.200547409 8.320723799 7.211724011 7.166506762 7.56794458 94311121 pstA Stress Phosphate limitation Ralstonia metallidurans CH34 8.651393477 8.69705202 8.687516983 9.108625191 9.255312136 8.87102365 9.293221195 9.144515124 9.00560574 156865345 cah Organic Remediation Others Clostridium sp. L2-50 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 8.029095193 7.959898457 8.034573668 7.224669235 7.395704499 7.155442818 7.02387412 7.348892888 46308010 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.442813146 8.496782119 8.465625433 8.06624359 7.960593825 8.145451981 8.001899477 7.824784428 8.22501538 8.000000285 7.7784912 7.928386256 221564459 sigma_24 Stress Sigma factors Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.252240471 8.224986955 8.174788982 7.670878154 7.807811708 7.87182709 7.762466903 7.700017401 8.01479383 7.825657228 7.77734933 7.983532498 91228309 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Vibrio alginolyticus 12G01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 7.280874345 7.392867121 7.241084849 7.097341516 7.538622062 7.361548851 7.192686429 28542643 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.440641973 8.088598373 7.217649895 7.757353432 7.888228423 7.968479371 7.305721887 8.154238724 7.460477035 7.224759361 7.732699129 254514010 AceA Carbon cycling Carbon degradation others gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.343900737 8.484940908 8.376214046 8.235597239 7.838026327 7.759321387 7.615587549 7.697837602 8.014692119 7.639388531 7.956809406 227237877 phoB Stress Phosphate limitation Mobiluncus curtisii ATCC 43063 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus curtisii; 7.194641492 7.116910768 7.274463423 7.038607987 7.72401782 6.921773912 7.197972946 115373684 atzA Organic Remediation Herbicides related compound Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 8.776638397 8.648087042 8.868619956 8.127042226 8.631036109 9.043673258 9.25868639 8.436262189 9.125459063 8.905888673 8.975573855 9.149553577 124363477 pstB Stress Phosphate limitation Methanocorpusculum labreanum Z 8.513017911 8.554994061 8.85555508 8.109224076 8.129158681 8.074734449 7.799596484 7.861351403 8.240185268 7.952519424 7.895340705 8.320405306 211587109 exoglucanase Carbon cycling Carbon degradation Cellulose Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 8.797954286 8.860287018 8.926204239 9.301890821 9.24448712 8.753113996 8.775922828 9.41934119 8.7021328 9.18994924 8.978531363 9.113560592 126722263 bphD Organic Remediation Aromatics Polycyclic aromatics Rhodococcus sp. HA99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.15084474 8.17890557 8.696684464 8.589240849 8.642164466 8.390351623 8.866536571 8.405033611 8.435782222 8.506494983 8.382011777 119539019 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.282126614 8.212424339 7.77653742 7.677471746 7.819818935 8.065607311 7.530501855 8.294187733 7.317032779 7.704661552 7.592296904 190699944 fnr Stress Oxygen stress Rhizobium etli CIAT 652 8.431462574 8.553783213 8.22031294 8.717784483 8.656776173 8.36040323 8.267051859 8.68393642 8.367358423 8.607886746 8.654439162 8.370397651 226226488 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Gemmatimonas aurantiaca T-27 superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 8.206054757 8.038141407 8.291938428 8.040290504 8.002147336 7.850711292 8.17205147 8.10312858 8.530368604 8.306467674 8.725006993 219994748 arsM Metal Resistance Arsenic Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 8.204231743 7.912861323 7.522474011 7.603968501 7.920743775 8.220580511 7.832276637 7.799117228 7.800608028 8.211324882 61224796 phenol_oxidase Carbon cycling Carbon degradation Lignin Pleurotus pulmonarius superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pleurotaceae;genus:Pleurotus; 7.935202009 8.146458628 7.304241686 7.357481399 7.52374718 7.308687245 7.389880168 7.430052666 7.263778708 16080780 narH Stress Oxygen limitation Bacillus subtilis subsp. subtilis str. 168 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 8.751215985 9.011670587 8.745767415 8.292489751 8.453536359 8.895210115 9.19693635 8.838465943 8.733480698 8.939455066 9.229062696 8.960659322 126631122 pstB Stress Phosphate limitation Marinobacter sp. ELB17 8.984584728 8.910461884 9.138529504 8.69935164 8.604359425 8.512595814 8.6767297 8.742095983 110819363 bphA Organic Remediation Aromatics Polycyclic aromatics Rhodococcus jostii RHA1 8.27470823 8.1342064 8.331587939 7.325010949 7.348979484 7.367777052 7.558526698 7.450863366 8.082335999 7.351057515 7.418429211 7.621753348 88948715 sox Sulphur Sulphur oxidation Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 8.416241711 8.599031463 7.885897878 8.320180418 8.383207528 8.820448027 8.408593833 8.572830255 8.068704849 8.193295586 8.12263475 83577893 Arylest Organic Remediation Aromatics Other aromatics Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 8.924048356 8.775029958 8.299372111 7.450381549 8.038698967 8.294329331 8.42860899 7.671377841 8.291873734 7.404326981 8.007028273 7.887067913 151302384 APS_AprA Sulphur adenylylsulfate reductase Desulfotomaculum sp. DSM 8775 8.221210644 8.151087875 8.277072726 8.038512984 8.155844724 8.142648045 7.64397375 8.197271911 8.57445362 8.259438339 8.363107191 8.248772108 76796557 amyA Carbon cycling Carbon degradation Starch Thermoanaerobacter ethanolicus ATCC 33223 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Thermoanaerobacter;species:Thermoanaerobacter pseudethanolicus; 8.812451487 8.961671592 9.077151543 8.304628695 8.175816613 8.179613759 8.000904172 7.822783018 8.189561568 8.017543514 7.898799386 8.14290328 91691223 nmoA Organic Remediation Aromatics Nitoaromatics Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.812762916 8.888931148 8.72537063 8.019291222 8.311235917 8.266805958 8.246272724 8.519990475 8.105634971 8.4454346 8.299206764 87247611 aoxB Metal Resistance Arsenic Variovorax sp. RM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax; 8.832460789 8.726199758 9.017704833 8.731355962 8.736679128 8.44471346 8.727156418 9.205485924 8.901920276 9.004711137 8.932619686 8.886532626 83943427 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 8.05701435 8.122504244 7.791829653 7.697170415 7.836614197 7.638139618 7.925441753 8.508479202 7.80689001 7.82528243 7.763809016 30089160 nirK Nitrogen Denitrification Haloferax denitrificans superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax; 9.740056933 9.786743731 9.908719795 9.147175202 8.917975841 8.843522642 8.966479234 8.981168817 8.589180893 9.03632007 8.795871611 9.191824094 109632247 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.820703192 8.873801547 8.952814755 9.564050491 9.263445218 9.068889122 9.580588779 9.387965565 9.248169966 9.495522829 9.594978267 9.117440256 222422369 nmoA Organic Remediation Aromatics Nitoaromatics Staphylococcus carnosus subsp. carnosus TM300 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus carnosus; 7.37288628 7.387437747 7.647916797 7.117431125 7.467140895 197747792 alkK Organic Remediation Others Mannheimia haemolytica PHL213 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Mannheimia;species:Mannheimia haemolytica; 9.080428744 9.28175686 9.04835862 8.224546417 8.316815132 8.176098117 8.205623796 9.305554753 8.146320895 8.142153818 8.188704597 116622150 xylA Carbon cycling Carbon degradation Hemicellulose Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 7.783698532 7.977501767 7.981636389 7.569214719 7.650886685 8.355375557 7.874647113 7.971025281 7.802281181 146192307 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.380915282 8.438829394 8.409156677 7.857305072 8.17608219 8.341733775 8.867639817 7.768009499 8.782885837 7.946031422 7.964530034 8.03956159 84387642 ureC Nitrogen Ammonification Vibrio splendidus 12B01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 7.48657389 7.536984423 7.121062624 7.581746039 7.833178155 7.772819746 7.839973936 7.688701095 148240828 nirA Nitrogen Assimilatory N reduction Synechococcus sp. WH 7803 9.012263443 8.439698591 8.542219618 7.89468922 7.954867027 7.972224131 7.691608581 7.931325793 7.751114918 8.574790792 110822354 limEH Carbon cycling Carbon degradation Others Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.525952579 8.857536105 8.729682216 8.392310484 8.631053283 8.559912486 8.389165784 8.759739556 8.399370936 8.614132726 8.517696177 8.696363426 227486362 fnr Stress Oxygen stress Anaerococcus lactolyticus ATCC 51172 8.115655931 8.479476103 8.366027583 8.659878171 8.236812437 8.17132423 8.402983983 8.386015082 8.388799221 8.565258621 8.22423822 8.345032494 260172800 mannanase Carbon cycling Carbon degradation Hemicellulose Bacteroides sp. D2 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 8.487254051 8.175345605 8.932334123 7.805396678 7.833910208 7.427443467 7.904122748 7.727802666 7.721458447 7.455649535 7.751624637 7.797188686 124601072 linB Organic Remediation Pesticides related compound Mycobacterium tuberculosis C superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 8.746726026 8.416274748 8.602306761 8.580420265 8.338750278 8.238896345 8.378931543 8.244453653 8.463300622 8.33432859 8.237241623 8.463617819 1591434 ChrA Metal Resistance Chromium Methanocaldococcus jannaschii DSM 2661 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanocaldococcaceae;genus:Methanocaldococcus;species:Methanocaldococcus jannaschii; 8.450902752 8.595320289 8.96972555 8.350945702 8.137918524 8.144535149 7.942918543 7.906373883 8.281074176 8.076425206 8.035517243 257798527 obgE Stress Radiation stress Desulfohalobium retbaense DSM 5692 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium;species:Desulfohalobium retbaense; 8.435925777 8.385328996 8.124482246 8.015092153 7.906618157 7.581777832 7.854886318 7.9241097 7.860772855 8.086197004 8.071262738 8.005433831 117999992 phtA Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.877817465 8.669196308 8.785725991 8.463858821 8.362592413 8.224521629 8.331931031 8.431090907 8.438854169 8.326429685 8.224813726 8.348853473 148554676 bphA Organic Remediation Aromatics Polycyclic aromatics Sphingomonas wittichii RW1 9.140768353 9.016206887 9.136925394 8.83016586 8.910316642 8.697044355 8.960000236 9.000372387 9.270266556 9.230720895 9.136780794 9.116243539 67541162 xylanase Carbon cycling Carbon degradation Hemicellulose Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 8.297479255 8.329871717 8.12177857 7.253088941 7.500144127 7.778326109 7.739817044 7.32709816 8.173994235 7.721936068 7.260655177 7.351098969 78498745 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Thiomicrospira denitrificans ATCC 33889 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Sulfurimonas;species:Sulfurimonas denitrificans; 8.457931064 8.391998098 8.731727867 7.630271158 7.724414239 7.944041872 7.881925137 7.875671317 8.112708801 8.026851011 8.038154235 8.185653938 110647724 atzA Organic Remediation Herbicides related compound Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 8.524958125 8.539183813 8.627511068 8.394614005 8.359406747 8.08879074 8.10054153 8.315668786 8.243214218 8.325818167 8.025637978 8.26466171 209517683 mmoX Carbon cycling Methane Methane oxidation Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.100153242 7.815143997 8.387491248 8.17739925 8.208604772 7.864103771 7.653970579 7.218334529 7.628388251 7.637566782 7.84914303 161329303 pilin virulence pilin Shewanella benthica KT99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella benthica; 9.312194706 9.200784392 9.316721172 8.693225709 8.78766109 8.700141912 8.359108495 8.300615919 218564206 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 8.62862939 8.252060332 8.614602982 7.909171393 8.079647487 7.996937275 7.881601226 7.788379024 7.966759606 7.937035254 7.734872006 8.04733265 118618643 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 8.691451768 8.895501896 9.175934559 8.56906033 8.51144154 8.46825989 8.383698554 8.675111445 8.569024172 8.991167862 8.795932236 8.702979019 269796395 type_III_secretion virulence secretion Sanguibacter keddieii DSM 10542 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Sanguibacteraceae;genus:Sanguibacter;species:Sanguibacter keddieii; 8.79673713 9.019919254 8.534282254 8.488727822 8.193236318 8.456201967 8.641210426 8.353412477 8.361688197 8.550909851 8.241727367 8.419712895 88705723 czcD Metal Resistance "Cadmium,Cobalt,Zinc" gamma proteobacterium KT 71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 8.511232405 8.430176656 8.134402209 7.562919352 8.134087688 8.211050918 8.085942506 7.640464006 8.228681184 7.776579878 7.766160199 7.704878212 170694972 phtA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 9.119589218 9.168191091 9.307243967 9.561467504 9.477578643 9.356572093 9.584215448 9.916071898 9.490776745 9.722619507 9.516851268 9.716651302 192283898 nitA Organic Remediation Aromatics Other aromatics Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.8440982 8.723229431 8.509552779 8.749338246 8.621041706 8.706127673 8.631059674 8.940544894 8.809656436 8.881553816 8.877693719 8.967919513 76802762 alkK Organic Remediation Others Natronomonas pharaonis DSM 2160 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natronomonas;species:Natronomonas pharaonis; 9.017935733 8.321073373 8.392129475 8.968691577 8.592411707 8.19257859 8.600087216 8.708206005 8.527966321 8.852908943 9.105328249 8.330216338 220711300 pmdAB Organic Remediation Aromatics Others Comamonas testosteroni KF-1 8.55461399 8.095441251 8.739353785 7.845907672 7.820370571 7.741924535 7.78557283 7.620652453 8.089614531 7.917176058 7.86220883 7.874009762 643641 tftH Organic Remediation Aromatics Chlorinated aromatics Burkholderia cepacia superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.728683392 8.658483283 8.366900412 8.434769501 8.388699323 8.365592176 8.476642407 8.524088277 8.291366307 8.299585826 8.312530397 8.288163326 198262255 mer Metal Resistance Mercury gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.893333648 9.116901238 8.881840082 8.507215761 8.20413095 8.742933536 8.877235624 8.467066355 8.688414141 8.400447551 8.441819081 8.260762107 149927332 iro virulence Limnobacter sp. MED105 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 8.950702431 8.806097974 8.920505117 8.518086627 8.390468019 8.372986605 7.894588 7.966365232 8.217479303 8.101512466 7.975770714 8.404176442 256008573 sigma_70 Stress Sigma factors Acidimicrobium ferrooxidans DSM 10331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Acidimicrobiales;family:Acidimicrobiaceae;genus:Acidimicrobium;species:Acidimicrobium ferrooxidans; 9.595187622 9.431074076 9.641393731 8.907630603 8.714722367 8.603583623 9.090630506 8.860768167 9.106079584 8.96398486 9.014549877 8.944481557 118720004 pbrA Metal Resistance Lead Burkholderia multivorans ATCC 17616 8.555199443 8.60104033 8.239629359 8.387456263 7.921142736 8.471816692 8.78146829 8.554494018 8.728478251 8.36800981 8.437069985 8.341901957 71164188 sigma_24 Stress Sigma factors Xylella fastidiosa Dixon superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xylella;species:Xylella fastidiosa; 9.864333341 10.07355524 9.913954031 9.372595191 10.2680637 10.52898099 10.0090124 10.36781005 9.980648836 10.00573406 10.20325873 55232995 pimF Organic Remediation Aromatics Aromatic carboxylic acid Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 9.541894052 9.613810225 9.701246078 8.757694176 8.675737018 8.337707419 8.751708302 8.862623848 8.958428794 8.979025525 9.091331178 8.969402973 57235066 TerC Metal Resistance Tellurium Dehalococcoides ethenogenes 195 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides;species:Dehalococcoides ethenogenes; 8.625112972 8.61272102 8.582813539 8.185954015 7.917000119 7.874160744 7.788215899 8.228047812 8.150464603 8.29287482 8.158890624 8.357860993 89068644 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 8.92705048 9.075273347 9.241872305 8.654080858 8.750893172 8.614991381 8.658865612 8.745709569 8.791090497 9.183850763 9.268684816 8.948172306 82735456 vanA Carbon cycling Carbon degradation Others Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.248053647 8.48879933 8.635182048 8.385609924 8.152025258 8.024344237 8.134929275 8.40507294 8.097366722 8.138841875 8.11435388 8.132711693 222080985 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.424305738 8.159142672 8.261481547 7.965526407 7.754869813 7.730949202 7.913990114 7.878762023 7.957619653 7.698221728 7.952839838 55773163 obgE Stress Radiation stress Thermus thermophilus HB8 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 9.218761889 9.480973534 9.440212593 9.748760618 9.796715144 9.415138443 9.574635611 9.816129719 9.253418535 9.585645833 9.309645814 9.197075361 29466010 norB Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.197232516 8.138448597 7.500888752 7.332468711 7.215723761 7.212177624 6.868189175 7.66369066 6.981416043 7.051157989 7.370412557 157679463 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9.225309184 9.065754369 9.288214233 8.514064931 7.855951893 8.340577995 8.1374118 8.294781662 8.390683051 8.430869163 8.692663928 23492560 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 8.335177546 8.530760771 8.461630618 7.698704974 8.162195104 8.574684929 7.986917157 7.990925737 8.477088925 7.86741739 8.217174033 7.797333076 157402459 bco Organic Remediation Aromatics Aromatic carboxylic acid Methanococcus maripaludis C6 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanococcaceae;genus:Methanococcus;species:Methanococcus maripaludis; 8.971645015 8.900939361 9.239154882 8.197353069 8.214103716 8.344804219 7.98434786 8.134199554 7.986913526 8.128108314 8.028021693 8.403851592 224606289 pstB Stress Phosphate limitation Natrialba magadii ATCC 43099 8.181595577 8.10381202 7.804614245 7.674673834 7.92032562 7.923329423 7.681996426 8.443879808 7.649057921 7.639995936 8.096608743 188481029 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 8.348341487 8.078381742 8.851488717 7.903390595 7.617782349 7.88663267 7.517798443 7.095572722 7.950648347 7.641870469 7.592100386 7.705406119 169804747 ppx Phosphorus Phosphorus utilization Leuconostoc citreum KM20 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc citreum; 8.051658575 8.216107997 7.161269191 7.20184649 7.145152929 7.014657226 6.72109916 7.507850824 7.004771032 6.726800909 56910187 glnA Stress Nitrogen limitation Bacillus clausii KSM-K16 8.331419731 8.499227194 8.249887923 7.861392094 7.466493472 7.4404722 7.552758167 7.207249468 7.591823535 7.366548836 7.70383667 224579028 rubisco Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.644730757 7.866597043 7.760737984 7.587534976 7.827290203 8.101862679 7.658707796 7.856714262 210160043 pstB Stress Phosphate limitation Collinsella stercoris DSM 13279 8.884434659 8.957012446 8.700100101 8.883364915 8.961925538 8.411250828 9.153983091 8.698063037 8.813858267 8.793970175 8.924254022 78048370 pilin virulence pilin Xanthomonas campestris pv. vesicatoria str. 85-10 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas euvesicatoria; 8.974012911 8.685887387 8.825501462 8.339897635 8.277257856 8.080445707 7.773525398 7.960345823 8.641133205 7.930149982 7.913981196 8.170115775 193224764 pcc Carbon cycling Carbon fixation Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 9.054779873 8.735574196 8.751122245 8.84444939 9.037571802 8.782720557 8.551553101 8.980001671 8.775533826 9.101984643 8.766301532 110634311 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 9.783884557 9.557747914 9.864271224 8.896379202 8.909476061 8.74997319 8.921933685 8.53444133 8.833004373 8.774212373 8.672955829 9.178722093 70999251 CopA Metal Resistance Copper Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 9.586338999 9.258842724 9.695516499 9.092073319 8.813163773 8.719752156 8.622505037 8.527155621 8.791886291 8.709780824 8.977031729 225013024 pcc Carbon cycling Carbon fixation Flavobacteria bacterium MS024-2A superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria; 8.456329683 8.27467691 7.912310694 8.023813782 7.956560586 7.451352279 7.691708045 7.979435658 7.814674974 7.97071401 7.92659259 114799478 ArsC Metal Resistance Arsenic Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 8.227179719 8.242697794 8.462598121 8.488803672 8.243575557 7.915664676 8.266102739 8.162617596 8.234066685 7.936618044 7.817736395 201066455 endoglucanase Carbon cycling Carbon degradation Cellulose Trichoderma sp. SSL superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Trichoderma; 9.400378326 9.241467958 9.265904929 8.863077599 8.84990701 8.767769394 8.845963668 8.861983951 8.83090612 8.967388869 8.969084536 9.19847955 221635505 pimF Organic Remediation Aromatics Aromatic carboxylic acid Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 8.404079946 8.390572738 8.334929379 8.379022943 8.254513063 8.016071694 8.014408648 8.298553687 8.416272619 8.208019594 8.164114925 8.19847045 108757793 sigma_24 Stress Sigma factors Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 8.420390612 8.136344559 7.196713203 7.407918757 7.256770065 7.094417919 165909652 amyA Carbon cycling Carbon degradation Starch Bacillus amyloliquefaciens superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 8.855106278 8.759823657 8.833108988 8.332875664 8.181047436 8.29225238 8.388503871 8.177726465 8.442595341 8.425364931 8.493312309 8.592252107 146343609 sox Sulphur Sulphur oxidation Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.519254047 8.608443866 8.450096592 9.150679542 8.88758261 8.431047388 8.823381805 8.72928172 8.771652527 8.680248925 8.705830429 8.097814569 119467506 glnA Stress Nitrogen limitation Neosartorya fischeri NRRL 181 8.824496913 8.60748746 8.699574382 8.52740699 8.624748683 8.44338231 8.599950891 8.742166296 171989338 hrcA Stress Heat shock Exiguobacterium sibiricum 255-15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 8.517637511 8.580139692 8.781567553 8.222807156 8.161217886 8.065318484 7.527617323 7.556692513 8.448735138 7.686140272 7.58061904 7.81202397 154350635 TerD Metal Resistance Tellurium Bacillus amyloliquefaciens FZB42 9.044198993 8.834937334 9.145410516 8.564801628 8.590363698 8.551428989 8.741831081 8.670952581 8.583275835 8.966645756 8.770688514 8.361150755 83574500 ppx Phosphorus Phosphorus utilization Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 8.454650051 8.47150192 8.839183508 8.862158863 8.646603982 8.104272336 8.339506057 9.019857914 8.692293614 8.607259789 8.565021135 8.766770404 169831693 pstB Stress Phosphate limitation Candidatus Desulforudis audaxviator MP104C 9.052776162 8.593124527 8.805363232 7.880516647 8.188317551 8.251834174 8.152662197 8.081757624 8.195680732 8.38800934 70673011 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.223675631 8.22690217 8.228692178 7.932491142 7.684970096 7.523730608 7.455814472 7.530006866 7.999660053 7.538925416 7.499589484 7.553555655 189340030 sigma_24 Stress Sigma factors Chlorobium limicola DSM 245 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium limicola; 8.304916733 7.968730492 7.675833021 7.349668787 7.367867346 7.036410859 7.622256302 7.074350913 6.93907388 7.303097369 215414289 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 7.88043755 7.941996179 7.654537727 7.53641086 7.59204087 7.783265834 7.44933699 7.485657879 7.575167986 220908248 ChrA Metal Resistance Chromium Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.07755755 7.775712532 7.718889321 7.402977335 7.550295938 7.668420362 4157975 pectinase Carbon cycling Carbon degradation Pectin Erwinia chrysanthemi superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya; 8.181739122 8.083909599 8.344965634 7.438390803 7.24863154 7.537369578 7.554523901 7.890291615 7.452444705 7.511332886 171911088 pstC Stress Phosphate limitation Verrucomicrobium spinosum DSM 4136 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Verrucomicrobium;species:Verrucomicrobium spinosum; 10.52289202 10.16635538 10.13635229 10.42630294 10.07564347 10.26609127 10.53195296 10.13084517 10.23396611 10.13001676 10.29030285 10.21097224 118571351 pstB Stress Phosphate limitation Mycobacterium ulcerans Agy99 8.803828217 8.703791258 8.195724472 8.693178327 8.641231335 8.554842441 8.718908991 8.578402262 8.497987993 8.246443673 8.382227197 8.048714742 110640185 pstA Stress Phosphate limitation Cytophaga hutchinsonii ATCC 33406 7.124246031 7.234568562 7.366382188 7.250087986 8.038884384 87199914 pimF Organic Remediation Aromatics Aromatic carboxylic acid Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 9.486908806 9.508921907 9.723439264 9.083668693 8.624837827 8.72006314 9.06800682 9.068930804 8.95139006 8.990698885 9.125015371 219690816 ppx Phosphorus Phosphorus utilization Haemophilus parasuis SH0165 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus parasuis; 7.185289522 7.303676087 6.928565161 6.984866507 7.366836423 157376435 phoB Stress Phosphate limitation Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 8.245974376 8.002741024 7.597333527 7.50130803 7.745142575 7.610081686 7.743564474 8.103270143 8.000068226 7.944803038 7.623872831 170746555 obgE Stress Radiation stress Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 9.151788711 9.419868698 9.473918859 9.739881407 9.89932141 9.523134742 9.490421732 9.729732951 9.533018328 9.507787184 9.192454978 9.060243644 29160349 exoglucanase Carbon cycling Carbon degradation Cellulose Exidia glandulosa superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Auriculariales;family:Exidiaceae;genus:Exidia; 8.434168642 8.549540211 9.168508562 9.263183593 9.111859455 9.135279337 9.76136995 9.034657313 9.575067614 9.178612819 9.436943651 198035686 pstC Stress Phosphate limitation Burkholderia cenocepacia J2315 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 9.059161084 8.18626066 8.114043283 9.00525966 8.5957675 8.18575557 8.819620804 8.708248665 8.556204333 8.405926357 8.350260421 8.290978518 108769013 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium sp. MCS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 9.048148614 8.766072514 9.091663392 8.166808896 8.200564074 8.077881934 7.940270518 8.241288358 8.185054187 8.384735009 8.281009982 8.576395696 268162373 endochitinase Carbon cycling Carbon degradation Chitin Photobacterium damselae subsp. damselae CIP 102761 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium damselae; 8.081297987 8.386823411 8.060682406 7.581629963 7.794527284 8.400909728 8.752046816 8.277847597 8.882872776 8.331836391 8.356193525 7.996001105 167836545 mhpC Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia thailandensis MSMB43 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 8.350815607 7.903440474 8.055473026 7.38016039 7.527191638 8.022755157 8.00087088 7.181100872 7.426429382 7.601596291 56459718 AceB Carbon cycling Carbon degradation others Idiomarina loihiensis L2TR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina loihiensis; 7.254333869 7.186478345 6.875492153 196255105 grpE Stress Heat shock Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 10.20154232 10.12785361 9.694106287 10.27425131 10.11657766 10.20570839 10.51134466 10.21554395 9.821259638 9.769214736 10.00302777 9.80801701 118027744 proO Organic Remediation Aromatics Other aromatics Burkholderia phymatum STM815 9.103250341 9.118422709 9.279064455 8.530859847 8.238738154 8.496026625 8.612247041 8.359431159 8.431124289 8.48761939 8.62459689 8.7204207 148500415 vanA Carbon cycling Carbon degradation Others Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.155412619 8.169173466 8.387106109 8.486467071 8.23883808 8.081525772 8.326339751 8.165516399 8.083271827 8.277222162 8.16897169 7.844066682 154161105 CopA Metal Resistance Copper Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.431247485 8.309131833 8.666636812 8.333389204 8.240497269 7.988802309 8.400934945 8.769297015 8.557939989 8.589999772 8.384349017 8.671661024 90103683 TehB Metal Resistance Tellurium Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.397418137 8.339021331 8.353503961 7.254322068 7.387049776 7.801577544 8.466878227 7.511745769 8.074723969 7.262443557 7.832620966 7.667471033 154251933 obgE Stress Radiation stress Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 8.243916717 8.083701156 8.231758743 8.2068034 8.108450174 7.758632635 8.190323514 8.391721467 8.266289821 8.152119126 8.080336704 8.697834995 62468076 bco Organic Remediation Aromatics Aromatic carboxylic acid uncultured bacterium superkingdom:Bacteria; 9.35809976 9.077521333 9.568676553 8.770150565 8.620069466 8.612716992 8.678296761 8.474628109 8.816121621 8.651598502 8.613349251 8.763867798 167348689 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.25821183 8.176277179 8.400517097 7.64323195 7.5037933 7.887441458 8.162743482 7.465496618 8.190679742 7.654591989 7.541632627 7.569489014 91687429 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.497694123 8.400538214 8.453665193 8.253404317 7.944718402 8.118975795 8.368601529 8.758426354 8.160857993 8.050022386 8.378097179 261284488 hly virulence hemolysin Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 9.744616158 9.80370552 9.831873343 9.33786617 9.08878865 9.149709766 9.271603995 9.327641498 9.056777508 9.308895308 9.374152607 9.383574522 90023084 Arylest Organic Remediation Aromatics Other aromatics Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 9.187759765 9.314971875 9.433632454 8.620112559 8.553223407 8.462705531 8.071891534 8.015609162 8.195543046 8.431289764 8.276108529 8.668801354 152027396 nrfA Nitrogen Dissimilatory N reduction Anaeromyxobacter sp. Fw109-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 9.499599958 9.642359111 9.701924969 8.599934251 8.801766879 9.043022881 9.496672017 8.676469139 9.41102995 8.963643364 8.909248434 8.776723912 262199603 fnr Stress Oxygen stress Haliangium ochraceum DSM 14365 8.540266374 8.392342626 8.115903247 8.23339478 8.291306804 7.07058303 7.521450025 7.775874623 8.064274781 68135527 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.115402237 7.822344106 8.095213047 7.691553943 7.580733406 7.36849398 7.43577104 7.601178753 7.770698117 7.624292251 7.403127212 7.655358527 118468033 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.514024346 8.427534377 8.464399962 7.959195754 7.730036942 7.88353236 8.194473507 7.765706304 8.200161554 7.856609921 7.839388999 7.789169361 71739992 CopA Metal Resistance Copper Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 9.317964773 9.286382559 9.186668987 8.490612036 8.602329119 8.451358762 8.548774473 8.233762788 8.439907106 8.375085859 8.745431733 211957737 sigma_32 Stress Sigma factors Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 8.182644197 8.304027373 7.569425996 7.334412002 7.641244931 7.55004907 6.881463453 7.366471202 7.505009348 113729438 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 9.148421829 9.161008607 8.959314468 9.132008076 9.112341638 9.044189958 9.290165169 9.429606102 9.291773417 9.505304627 9.392212302 9.456337487 78187104 pstB Stress Phosphate limitation Chlorobium luteolum DSM 273 9.360963076 9.063608862 8.947083259 8.613972673 8.760238764 8.752930031 8.821794129 9.026316867 9.148992208 8.821797856 8.797483649 8.689604751 50085442 pimF Organic Remediation Aromatics Aromatic carboxylic acid Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 8.850653086 8.79488024 8.975339519 8.65136214 8.58739749 8.30115338 8.209293855 8.211096625 8.289384447 8.232331073 8.319927714 8.406654197 254473604 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 8.685197386 8.527248532 8.341801688 8.109448997 7.983344062 7.826634546 7.840024308 7.807514595 62003563 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.472229388 8.640960367 8.153278136 8.057030322 7.699889898 7.939754223 8.51490704 8.240592414 8.181443554 8.11137648 7.974538607 239812928 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 9.067210625 8.951185168 8.795230062 8.542983703 8.522624473 8.547483323 8.243633043 8.685067419 8.949156335 8.976988809 227872809 hrcA Stress Heat shock Oribacterium sinus F0268 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Oribacterium;species:Oribacterium sinus; 8.278805166 8.520462947 8.495531199 7.832657348 7.460871971 7.977547887 7.493939696 7.266908418 7.554237185 7.687927859 7.776313677 149118579 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 9.263500504 9.398158221 9.381973958 9.360447311 9.491518512 9.298214807 9.317301066 9.588824167 9.358019838 9.791125625 9.485110967 9.383537721 223585846 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.758574047 8.780019197 8.794922838 9.179984026 9.134531764 8.912071252 8.951223456 9.015492051 8.927379794 8.869819054 8.717084974 8.32823112 226319780 phoB Stress Phosphate limitation Deinococcus deserti VCD115 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 8.945437409 8.558961337 8.697034603 8.202037605 8.137031494 8.304679241 8.470158708 8.516436108 8.242267783 8.241226033 8.639099698 240141791 P450 Energy process Energy process Methylobacterium extorquens AM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 8.457260652 8.207564761 8.427831062 7.693009183 7.804226846 8.24764943 8.487726896 7.726159716 8.5211502 7.839786023 7.780278287 7.889528574 260861571 ppk Phosphorus Phosphorus utilization Selenomonas sputigena ATCC 35185 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sputigena; 8.580077357 8.544917749 8.902828896 8.684137885 8.908438636 8.750419723 8.572346867 8.925539056 8.599928286 8.698178933 9.014770438 8.768779739 146401332 NADH_ubiquinone_oxidoreductase Bioleaching Electron transport Acidiphilium cryptum JF-5 10.20979352 10.40296659 10.24976408 9.268834721 9.482826565 10.46201589 10.51138818 10.09888883 10.67879186 10.38161977 10.3129798 10.49501877 258595696 sigma_70 Stress Sigma factors Desulfurivibrio alkaliphilus AHT2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfurivibrio;species:Desulfurivibrio alkaliphilus; 8.752302563 8.660651473 8.761953272 8.085985884 8.280318432 8.515218606 8.933135948 8.497404272 8.9431009 8.235187873 8.017371004 8.1848834 150274861 pstB Stress Phosphate limitation Bacteroides capillosus ATCC 29799 8.096672642 7.969817318 8.411149026 7.542012548 7.565990555 7.728253227 7.965445223 7.382239682 8.191555371 7.554819527 7.484977183 7.512633054 56911956 phoA Stress Phosphate limitation Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 9.276905142 9.01325995 9.38277964 8.6815546 8.801536643 8.519177805 8.372304111 8.38777422 8.209154337 8.39293585 8.397776447 8.697551306 94972219 CadA Metal Resistance Cadmium Deinococcus geothermalis DSM 11300 8.62160187 8.708556626 8.750423413 8.204812633 7.951652983 8.117782605 7.897487194 7.852847832 8.350109176 8.006406647 7.880744001 8.266340034 90418213 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 8.424349059 8.486663014 8.430623524 8.496560885 8.550369394 8.391930596 8.50038662 8.56274401 8.397767362 8.582433884 8.521224168 8.152711811 85722387 atzA Organic Remediation Herbicides related compound Syntrophus aciditrophicus SB 8.781014477 8.605899667 8.645703134 8.015212935 7.851286926 7.829090202 7.363356398 7.285826497 7.838827908 7.759930525 7.760945067 7.929676026 196173236 nrfA Nitrogen Dissimilatory N reduction Anaeromyxobacter sp. K superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 8.889594792 9.146544652 9.006603821 8.479582018 8.488191086 9.037563787 9.354196582 8.664042383 9.181636674 8.748337318 8.783377239 8.79481593 94972195 katE Stress Oxygen stress Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 8.294632716 8.381319977 8.413567591 8.094476584 8.004799198 7.965195207 7.71290498 8.184968976 8.18907029 8.058405403 8.04543184 8.137920745 56696533 inv virulence invasion Ruegeria pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 9.012388546 8.848476294 8.82250297 8.283228062 8.524969293 8.340784676 8.424259961 8.565356963 8.536349379 8.703604427 8.68349388 8.649406873 119373243 oxyR Stress Oxygen stress Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.638350021 8.58935991 8.224157506 8.442015389 8.461216139 8.351039839 8.429638603 8.771267686 8.662885932 8.7583328 8.686367173 8.898459665 154247904 czcC Metal Resistance "Cadmium,Cobalt,Zinc" Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.363417556 8.188299897 7.847600379 7.475386489 7.603176743 7.956847843 8.167771316 7.965267039 7.738979947 7.78980021 9105753 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Xylella fastidiosa 9a5c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xylella;species:Xylella fastidiosa; 8.205440277 8.042321636 7.987978082 8.477379411 8.624254294 8.397060037 8.09954927 8.499668055 8.538271877 8.534467416 8.375134121 57224293 grpE Stress Heat shock Dehalococcoides ethenogenes 195 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides;species:Dehalococcoides ethenogenes; 8.318559412 8.123035464 7.673106651 7.652719847 7.739965953 7.789259937 7.676223373 7.715879604 7.331423829 7.781223491 85672677 fnr Stress Oxygen stress Roseovarius sp. 217 9.082104143 8.922299177 8.871066663 8.628732313 8.441475763 8.319183965 7.061487518 8.49489612 8.84427873 8.630035723 8.79779129 8.436573313 86742738 glnA Stress Nitrogen limitation Frankia sp. CcI3 8.773154223 8.872324716 8.696803726 8.446747899 8.436811304 8.737574696 8.885992318 8.632665825 8.651079936 8.601594963 8.596555627 8.825877529 226355519 pilin virulence pilin Deinococcus deserti VCD115 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 9.331754822 9.454473019 8.53244201 8.43435094 8.331660268 111148744 fnr Stress Oxygen stress Frankia alni ACN14a 8.28732671 8.052838426 8.045401754 7.926246589 7.891325989 7.499956736 7.859203851 7.996512522 7.829136454 8.017723094 7.922519825 74053798 cumA Organic Remediation Aromatics Other aromatics uncultured bacterium 8.489391379 8.207655897 7.582582566 7.962748206 8.116178731 8.326647919 7.466687613 8.335505995 7.585848305 7.819549632 7.748673406 198253384 hrcA Stress Heat shock Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 8.284271718 8.004901136 8.070711113 8.04188649 7.993331163 7.810357492 8.336764615 7.960832884 8.356460654 8.337600714 7.837331938 74053701 todC Organic Remediation Aromatics BTEX and related aromatics Sphingomonas sp. 1XXyl1b 8.171282594 8.166557656 7.460354999 8.07764299 8.33150488 7.580116349 8.403215803 7.724392661 7.668213642 7.838396909 227342779 sigma_32 Stress Sigma factors Rhizobium sp. NGR234 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 10.00349089 10.08702709 9.904400091 9.586046449 9.604133539 9.527105916 9.797373388 9.291171484 9.501144966 9.800500726 9.824639143 9.689459445 187920894 ChrA Metal Resistance Chromium Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 9.629471472 9.610317526 9.666028266 8.729615216 9.028419415 9.146758669 9.161047935 8.59257185 9.484871412 8.932797029 9.060320699 9.29564224 6010396 endolysin_transglycosylase Bacteria phage LYSIS Enterobacteria phage Mu order:Caudovirales;family:Myoviridae;genus:Mu-like viruses; 8.73038817 8.741282248 8.869780277 8.128416597 7.857240693 8.239230818 7.739095669 7.87843811 7.914412924 7.781899723 7.930484356 114227902 alkH Organic Remediation Other Hydrocarbons Alkalilimnicola ehrlichei MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 8.526844448 8.595201542 8.831646337 8.138645397 7.822415512 8.14269173 7.856212904 7.669025371 8.054557408 7.75087537 7.633827172 7.98922137 41406443 linB Organic Remediation Pesticides related compound Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 10.04517129 9.343213282 9.729838673 9.58873102 9.941513784 9.721776855 9.770329783 9.880319817 9.746393441 10.13891068 9.707437738 254491185 grpE Stress Heat shock Methylophaga thiooxidans DMS010 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Methylophaga;species:Methylophaga thiooxidans; 8.34513001 8.44398199 8.020502708 7.799950202 7.488808285 6.952207737 7.777760606 94311115 ppx Phosphorus Phosphorus utilization Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.565468785 8.091198376 8.749355601 8.559772135 8.574792782 8.091489844 8.867278164 8.244635189 8.400440851 8.615380603 8.412348866 219946052 dehH109 Organic Remediation Chlorinated solvents Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 8.807992708 8.914364198 8.891341739 8.271237404 8.658991979 8.48261481 8.549896174 9.04219076 8.772782548 8.980779254 8.754107138 8.9287166 238752084 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Yersinia rohdei ATCC 43380 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia rohdei; 8.348593828 8.080103921 7.867570311 7.945795833 7.970818668 7.382907535 7.882902679 7.858250666 7.829416173 7.966434793 8.048642157 15806334 pcc Carbon cycling Carbon fixation Deinococcus radiodurans R1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 8.494549301 8.681729195 8.684478931 7.933977766 8.195965862 8.328654518 8.565345354 8.093273022 8.591029973 7.843518018 7.992426523 8.0774395 41395795 TehB Metal Resistance Tellurium Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 8.956596445 9.105461811 9.164198554 9.69787628 9.601661402 9.445182945 9.620548655 9.843253498 9.245636656 9.746943966 9.584571715 9.064537117 27657637 chnB Organic Remediation Other Hydrocarbons Rhodococcus sp. Phi1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.333717837 8.364570527 8.363808515 8.243944434 7.657759598 8.005864762 8.182293013 148530047 silC Metal Resistance Silver Gluconacetobacter diazotrophicus PAL5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 9.128591842 9.199924521 9.318860507 9.170540644 9.050515805 8.928344246 8.69750533 9.479740674 8.408746129 9.019794663 9.164297948 9.196239034 282888920 sigma_70 Stress Sigma factors Burkholderia sp. CCGE1001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.494363537 8.503469488 8.590578313 8.593822898 8.501230195 8.751071213 8.890537305 8.357278751 8.847894031 8.512817661 8.50332755 8.521267481 157912529 glnA Stress Nitrogen limitation Dinoroseobacter shibae DFL 12 8.258477784 8.033209328 7.965415339 7.827105249 7.792145941 7.241418869 8.10694895 7.79535094 7.943492883 7.768689397 7.428155686 146410047 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.960678907 8.686503639 8.822697469 8.165994805 8.241101038 8.158840869 8.347529318 8.043703566 8.197862786 8.198058934 8.203813218 24373346 cytochrome Energy process Energy process Shewanella oneidensis MR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella oneidensis; 8.851077263 8.581173295 8.84296181 8.582071403 8.651256006 8.541506663 8.411119646 8.353992238 8.537121326 8.188683222 54024814 nagG Organic Remediation Aromatics Aromatic carboxylic acid Nocardia farcinica IFM 10152 8.670167515 8.650386303 8.463759099 8.566475591 8.369034024 8.372460672 8.598738057 8.578636492 8.587888311 8.742358694 8.74834264 8.688981964 113530353 bclA Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.559742125 8.811659989 8.670026888 8.294902999 8.33698089 8.218944159 8.119010772 8.337102747 8.268490367 8.02616987 8.367846649 8.389897889 74276793 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Actinobacillus succinogenes 130Z superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus succinogenes; 8.834003423 8.973839687 8.792313617 8.024648674 8.66369238 8.931541584 8.208287596 9.267779677 8.260316773 8.29633809 8.356118982 91699574 AceB Carbon cycling Carbon degradation others Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 8.956199521 9.194711916 8.714418237 8.237755317 8.369931124 8.653879976 9.101930424 8.495176577 8.925331439 8.398754991 8.396451581 8.180793065 29340972 ara Carbon cycling Carbon degradation Hemicellulose Bacteroides thetaiotaomicron VPI-5482 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides thetaiotaomicron; 8.627661322 8.67591197 8.815952779 8.054661085 8.1520204 7.832343628 7.705738065 7.386007651 7.604291551 7.673696153 8.084245712 119962058 ureC Nitrogen Ammonification Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 8.498056367 8.967408087 8.742374758 9.416479376 9.338836426 9.180447545 8.956842095 9.322752662 9.017760867 9.058152583 9.14297621 8.610774263 73537345 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 9.269505532 9.50694752 8.993292134 8.74888336 9.009264884 8.970411956 9.412387722 9.062963956 9.060736109 8.924016736 9.331638981 9.252031111 121530714 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.320320283 8.355478008 7.643164644 7.202616186 7.298520817 7.912559844 197103427 sigma_32 Stress Sigma factors Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 8.372245759 8.51218566 8.318059071 8.05345107 8.112129853 8.232806644 8.194714149 8.270134657 8.268820994 8.470289249 8.378108109 8.258444975 170718009 CopA Metal Resistance Copper Haemophilus somnus 2336 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Histophilus;species:Histophilus somni; 9.488981434 8.64583793 8.681235575 8.345411851 8.460467345 8.254744269 8.787869506 8.826124865 9.099809681 9.050297501 8.862862719 9.038615308 83312286 sigma_32 Stress Sigma factors Magnetospirillum magneticum AMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 8.622351979 8.474665381 8.998862352 8.160177312 7.955003014 7.555525783 7.759829948 7.874552008 8.117793033 8.029074162 8.044987682 7.800209203 219664365 bphA Organic Remediation Aromatics Polycyclic aromatics Rhodococcus sp. TFB 8.170746842 8.129932796 8.166716943 7.814076933 7.819954315 7.587271081 7.76038253 7.888896166 7.938021737 7.872917945 7.750271197 7.834456613 146154719 pcc Carbon cycling Carbon fixation Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 8.56863862 8.751415489 8.850614367 7.822309484 8.179732889 8.271781908 8.473654241 7.718535594 8.789561759 8.253193319 8.56007674 8.401714191 119948528 NiR Nitrogen Assimilatory N reduction Arthrobacter aurescens TC1 8.779175206 8.945381003 8.415258926 8.261167508 8.254528975 8.37532364 8.089360013 8.714979516 8.04330396 7.938096919 8.171128762 21115235 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Xanthomonas campestris pv. campestris str. ATCC 33913 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 9.537938849 9.801696505 9.797501336 9.002167815 9.384990944 9.734379494 10.15730551 9.60204859 9.942662228 9.584046622 9.68626448 9.963900164 167841588 sigma_24 Stress Sigma factors Burkholderia thailandensis MSMB43 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 9.462463563 9.083667773 8.832790159 9.18178238 8.762595281 8.516248316 9.093722223 9.239957262 9.001423967 8.980770265 8.823604072 8.819532878 89512930 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.66931818 8.546250293 8.718869574 8.30737628 8.202417153 8.216613966 8.137101534 8.001234541 8.534564983 8.032539636 7.91700086 8.169115618 40253077 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.327561803 8.046884715 7.918211938 7.888882199 8.196611255 8.152306078 7.928545918 8.257559655 8.024847445 8.172650902 8.202753988 8.171355126 264673490 fnr Stress Oxygen stress Caulobacter segnis ATCC 21756 8.236778015 8.25018247 8.313103845 7.847713849 7.88966706 7.873042137 7.810870947 7.681529483 8.168942043 7.742808047 7.779054663 7.810429387 77961891 phn Organic Remediation Herbicides related compound Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 8.477081943 8.409495247 8.482540438 8.589896232 8.50142126 8.333256138 9.14847772 8.53168133 8.720818994 8.601000048 8.592042194 260089370 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 9.256038378 9.425196903 9.37267562 9.210309284 9.078583006 9.006905037 9.451637645 9.489235928 8.929437301 9.524302052 9.329506934 9.40637893 170768798 MATE_antibiotic Antibiotic resistance transporter Escherichia albertii TW07627 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 8.742688598 8.329398992 8.405676599 9.316791039 9.166823984 9.147250662 8.501453211 9.414178495 8.730045463 8.766096982 8.916520214 9.394994022 91698183 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 9.877458004 9.843559588 9.845343056 9.253792005 9.329235486 9.365216951 9.498580063 9.421644832 9.400697101 9.676557319 9.492242057 9.565518328 114766404 linB Organic Remediation Pesticides related compound Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.992269876 7.906307565 7.508647516 7.789917994 8.060597177 7.872333826 7.755492894 7.690149582 118059167 phn Organic Remediation Herbicides related compound Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 8.427912165 8.608055234 8.543259724 8.080238231 8.105585252 8.463620303 8.427523016 8.079142458 8.572098136 8.516165102 8.510483905 8.330490562 119957137 SMR_antibiotics Antibiotic resistance transporter Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.838061581 8.703987457 8.970179493 8.850443611 8.466224187 9.04662462 8.875204527 8.881166781 8.902440195 8.766763947 8.426998325 86285332 ZntA Metal Resistance Zinc Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 9.162621305 8.857088918 9.103964848 8.801632095 8.473076237 8.579392444 8.474978324 8.778833546 8.549016403 8.710301925 8.645385444 8.73129689 120553165 phn Organic Remediation Herbicides related compound Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 7.0584563 7.269492643 6.865324911 7.349884128 157804738 APS_AprB Sulphur adenylylsulfate reductase Thiocystis violascens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocystis; 8.900836963 8.661622706 8.81830578 8.757148967 8.625828054 8.666324078 8.416883415 8.792251422 8.332135099 8.631794536 8.693256076 8.909067122 227428787 AceA Carbon cycling Carbon degradation others Xylanimonas cellulosilytica DSM 15894 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Xylanimonas;species:Xylanimonas cellulosilytica; 9.120716833 9.269556997 9.282021306 9.196906499 9.048003436 8.942218176 8.936727953 9.045195928 9.18194312 9.299111598 9.214459029 9.166212043 163762421 cap virulence capsule Bacillus selenitireducens MLS10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus selenitireducens; 7.862199453 7.657759598 7.461257304 7.81682299 7.580054531 7.610635912 7.503569373 7.603519205 99030553 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 8.950850846 9.04912705 9.172470614 8.075780127 7.920698732 8.375199969 8.344172281 7.708674879 8.320390316 8.500846982 8.048294341 29466016 norB Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.071056966 8.758171036 9.109559863 8.498253383 8.523146824 8.486701572 8.419535529 8.29611507 8.45893564 8.58299629 8.513023395 8.77910972 261282727 cda Carbon cycling Carbon degradation Starch Geobacillus sp. Y412MC10 7.90334585 7.770434801 7.38015453 7.402563278 7.261748189 6.859898748 7.419362756 7.671576982 7.157793013 7.512792111 7.339257572 206596254 CopA Metal Resistance Copper Ralstonia solanacearum IPO1609 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 9.365273174 9.072539601 8.607701693 9.141709671 8.727085494 8.294806213 8.858381286 9.085665049 8.97360459 8.583810319 8.502657183 8.604475046 121594391 ChrA Metal Resistance Chromium Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 9.801660118 9.644403272 9.478194195 9.23559085 8.614096428 9.143848216 9.339380526 9.023449369 9.242458482 9.17717309 9.427931463 9.155646984 126727368 pstB Stress Phosphate limitation Rhodobacterales bacterium HTCC2150 8.500114559 8.661681185 8.679736167 7.850339358 8.087408138 8.137099414 8.221629627 7.946254208 8.470267809 8.230850397 8.292958999 219544904 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 9.006316726 9.09382356 8.936020135 8.47134826 8.961534533 8.813183527 8.872846071 8.647838047 9.270478359 8.756603167 8.518174261 8.690395814 71838500 ZntA Metal Resistance Zinc Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 8.565167791 8.861159207 8.374949953 7.642910975 7.602460861 8.372437666 8.690797275 7.969129722 7.832133405 8.143724593 8.247812829 171700351 pstB Stress Phosphate limitation Cyanothece sp. ATCC 51142 8.513267652 8.474852182 8.756360855 8.09478843 7.890859426 7.796402604 7.778547051 7.527111396 8.049417948 7.706436186 7.688412202 8.11808583 40788173 phenol_oxidase Carbon cycling Carbon degradation Lignin Melanocarpus albomyces superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;genus:Melanocarpus; 7.443406266 7.302230419 7.682222368 7.944120595 7.292685411 7.450847072 7.168840468 146410634 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Bradyrhizobium sp. BTAi1 8.8401331 8.558763671 8.488925579 8.981296919 9.002393132 8.746564432 239929907 glnA Stress Nitrogen limitation Streptomyces ghanaensis ATCC 14672 8.81124011 8.870423383 9.350414997 9.202349997 9.107582153 8.508971237 8.847275885 9.285337405 9.259696723 9.084635867 8.77005277 9.116433493 222055056 ChrA Metal Resistance Chromium Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 7.569296021 8.208862632 8.048417267 7.602874866 7.653255354 7.626253167 7.846076705 7.800692554 118669851 pmdAB Organic Remediation Aromatics Others Delftia acidovorans SPH-1 8.388055976 8.183453434 8.029535169 8.445560586 8.368634671 8.390529542 8.378917033 8.70405297 8.398888713 8.484792837 8.657449259 8.211348864 110286166 CadA Metal Resistance Cadmium Mesorhizobium sp. BNC1 10.91331388 10.66754877 10.70571836 9.762402486 9.46928385 9.121798695 9.30605391 8.943565059 9.73341211 9.677155089 9.524116568 229566322 sigma_70 Stress Sigma factors Beutenbergia cavernae DSM 12333 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Beutenbergiaceae;genus:Beutenbergia;species:Beutenbergia cavernae; 9.483799288 9.130153169 9.255586329 8.778138415 8.61552481 8.506126676 8.971312515 9.024051229 9.12860688 8.893726578 8.826923711 8.764937396 134100524 pimF Organic Remediation Aromatics Aromatic carboxylic acid Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 9.234761587 9.402455123 9.338635395 9.04737568 9.031525494 8.754100339 8.857307252 9.15742819 8.952241605 9.233088312 9.259730679 9.309431897 256559704 hrcA Stress Heat shock Brachybacterium faecium DSM 4810 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermabacteraceae;genus:Brachybacterium;species:Brachybacterium faecium; 9.556778842 9.481411577 9.507727632 9.232438132 9.176807082 8.977301518 8.889792233 9.110122069 8.900302195 9.026841936 9.239464425 9.3030682 158423080 CopA Metal Resistance Copper Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 8.527407305 8.502222004 8.91777875 8.330885972 8.320328795 8.032481936 8.405879094 8.883156966 8.716081046 8.791444427 8.528865675 8.558256213 172041821 phenol_oxidase Carbon cycling Carbon degradation Lignin Heterobasidion annosum superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Russulales;family:Bondarzewiaceae;genus:Heterobasidion; 9.104896752 9.171051801 9.269247062 8.805640219 8.820600582 8.531995843 8.837558558 8.961130064 8.119436245 8.867409484 8.726470255 9.052730077 116125638 SMR_antibiotics Antibiotic resistance transporter Leptospira borgpetersenii serovar Hardjo-bovis JB197 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira borgpetersenii; 9.28465363 9.094381396 9.055751702 8.875008748 8.588862725 8.496371624 8.643387483 8.860847126 8.613938059 8.66501572 8.963553963 149115334 ChrA Metal Resistance Chromium Shewanella baltica OS223 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 8.623538236 8.181810635 8.636930273 8.458637635 7.841872091 7.67599629 8.037628832 7.712467018 8.192479146 8.107589373 8.159753164 7.971673077 159046303 fnr Stress Oxygen stress Dinoroseobacter shibae DFL 12 8.187025494 8.458947513 8.226620476 8.058182667 8.152969707 8.203766794 8.42926988 7.998066872 8.015782856 7.738176198 7.872350886 7.577166241 227841677 sigma_70 Stress Sigma factors Oribacterium sinus F0268 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Oribacterium;species:Oribacterium sinus; 8.160162891 8.319205556 8.188445086 7.747175447 7.703142199 7.593771249 7.722990647 7.339793343 7.819007433 7.811181147 7.917112565 7.698494722 146337645 amyA Carbon cycling Carbon degradation Starch Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 9.789748599 9.715569422 9.714869086 8.984306463 9.186941158 9.277271384 9.291210192 8.616738527 9.171648916 8.911685847 9.276866398 9.036791946 162072839 dsrB Sulphur sulfite reductase Chlorobium limicola superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium; 8.740436396 8.317342524 8.30140705 8.424697232 8.217263769 7.905868405 8.422063275 8.118202134 8.136407298 8.204504783 8.14591542 156233864 sigma_24 Stress Sigma factors Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 8.909151759 8.710953083 9.00104617 8.38154939 8.403592075 8.211734879 7.84973125 8.211639948 8.588761843 8.135339653 8.14227847 8.38120238 111061802 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 9.316375373 9.263969296 9.216124845 8.558562118 7.978108928 8.548569943 8.797715149 8.372191401 8.386243288 8.468029142 8.318606797 8.660380587 229544055 glnR Stress Nitrogen limitation Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 8.734119632 8.296085533 8.448091996 8.576278709 8.32761513 8.218120032 8.331380913 8.545065756 8.529582388 8.370336299 8.309181065 8.390706139 225198500 katE Stress Oxygen stress Desulfonatronospira thiodismutans ASO3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfonatronospira;species:Desulfonatronospira thiodismutans; 10.42619929 10.30585824 10.26849138 9.600644871 9.895202559 10.01103101 9.959474892 9.862240078 9.998604379 9.795640706 10.10960901 9.916828134 58002781 ppx Phosphorus Phosphorus utilization Gluconobacter oxydans 621H superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter oxydans; 9.023799669 9.179783713 9.369015018 8.519419109 8.189505709 8.446764983 9.329232385 8.788972321 9.063589817 8.801629674 8.999039127 149408192 endolysin_transglycosylase Bacteria phage LYSIS Pseudomonas phage PA11 8.270230619 7.909157349 7.697538417 7.387915495 7.48683056 7.424536051 7.031149177 8.060795239 7.499731493 7.189761773 7.562129407 219680273 exaA Organic Remediation Chlorinated solvents gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.43934551 8.53588012 9.021819639 8.616349517 8.708776377 8.390710366 8.49116598 9.18896032 8.88817624 9.156863278 8.929356506 9.225347945 237801221 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 9.276428567 9.28517014 9.381664708 8.323686862 8.305144797 8.240553514 8.096935078 8.170327252 8.912365313 8.665286832 8.900855014 8.678859839 120405401 CopA Metal Resistance Copper Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 7.633505216 7.506996862 7.488104705 7.256148941 7.977150654 7.746193252 7.642557955 7.818106471 56388199 pstB Stress Phosphate limitation Anaplasma marginale str. St. Maries 9.562430335 9.479965295 9.711965988 9.188179703 9.373270946 9.366132964 9.244755488 9.756598604 9.035966443 9.499963367 9.584614571 9.650471345 170942308 glx Carbon cycling Carbon degradation Lignin Podospora anserina superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora; 9.097433384 8.559207565 8.827384583 8.409424738 8.295607097 8.280323963 8.220361809 8.557627707 8.329964627 8.409770582 8.236816698 269848633 obgE Stress Radiation stress Anaplasma centrale str. Israel superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales;family:Anaplasmataceae;genus:Anaplasma;species:Anaplasma centrale; 8.567640691 8.730161045 8.737780302 7.871993994 8.0769014 8.086467495 8.093043723 8.314574657 8.526036591 8.683589617 8.402018994 8.363322428 260864646 hrcA Stress Heat shock Ammonifex degensii KC4 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Ammonifex;species:Ammonifex degensii; 9.447029619 9.596703321 9.762273923 9.172045739 9.024581052 8.864278953 8.735089484 8.821676856 8.550457148 9.072060097 8.940388904 9.178577635 227980707 obgE Stress Radiation stress Tsukamurella paurometabola DSM 20162 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 8.577627618 8.56130445 8.238234637 8.40290344 8.168251783 8.231546379 8.483263747 8.326201022 8.471106178 8.282843556 8.195204263 8.284501404 196210603 ChrA Metal Resistance Chromium Geobacillus sp. G11MC16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.823358185 8.649621113 8.646152816 8.755705708 8.646202105 8.385272852 8.616854754 8.932204756 9.03228353 8.894318354 8.828181638 8.666775088 161380775 nhh Organic Remediation Aromatics Nitoaromatics Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 9.278694897 9.495249906 9.387365231 8.422648719 8.71278232 9.094856689 9.822356718 8.900598281 9.460246617 8.907955928 8.573992365 8.975724761 28869111 HBH Organic Remediation Aromatics BTEX and related aromatics Pseudomonas syringae pv. tomato str. DC3000 8.674649659 8.616631339 8.782991445 8.835980816 8.79472256 8.399476437 8.996989535 8.673821923 8.944237805 196196114 ppx Phosphorus Phosphorus utilization Alcanivorax sp. DG881 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 8.992246363 9.144197748 8.901211987 8.249760694 8.452376871 8.896911085 8.958333916 8.672984465 8.937726588 8.898410315 8.805983668 9.033971831 260088421 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 8.600864532 8.420444053 8.343877252 7.822663866 8.086000248 8.200374526 8.474720187 7.495557842 8.633181098 8.043665605 7.838825238 192764452 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.471415682 9.250215807 9.171497697 8.73275684 8.907701128 8.927050312 8.986179002 8.843414311 8.785334399 8.710502289 8.84800668 8.774831498 163258286 pcaG Organic Remediation Aromatics Other aromatics Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 9.132183987 9.025730334 9.089566544 9.025165787 9.035554393 8.828180156 8.811236715 9.141042196 8.577785941 8.842297199 8.728277328 9.116172515 62825529 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.171170998 8.159311822 8.287793548 7.746823138 7.728399306 7.707692322 7.846139797 7.888941538 7.932215876 7.956828188 8.01803307 7.868869027 172041046 obgE Stress Radiation stress Corynebacterium urealyticum DSM 7109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium urealyticum; 8.273479877 8.014452618 7.876383583 7.093926486 7.270359345 7.526541058 71024215 exochitinase Carbon cycling Carbon degradation Chitin Ustilago maydis 521 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Ustilaginomycetes;order:Ustilaginales;family:Ustilaginaceae;genus:Ustilago;species:Ustilago maydis; 8.102044463 8.081890376 7.521335871 7.147058833 7.349008318 6.980936644 6.873638615 7.051313231 7.085487829 7.597837416 99078028 tfdA Organic Remediation Aromatics Chlorinated aromatics Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8.298314914 8.439092403 7.654887444 7.63912295 8.000826106 7.983042253 7.629229886 7.889944766 7.949131391 8.014424735 7.929653648 114864313 iro virulence Acidithiobacillus ferrooxidans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus; 8.651704119 9.139628759 8.942791266 8.150914331 8.305774196 8.609636186 8.860851279 8.70058939 8.530221899 8.490433091 8.655022907 8.762251618 69154029 CopA Metal Resistance Copper Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.440335052 8.461501052 8.478990283 8.229131218 8.784960489 8.366611034 7.624186989 8.451086671 8.085233739 8.364173973 8.513965951 8.681196631 71557571 MATE_antibiotic Antibiotic resistance transporter Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 8.167940605 8.383548303 8.043598926 7.474892614 7.705151363 7.323509669 7.222931025 7.259549242 66801967 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 8.481330194 8.246628695 8.396671801 8.397698527 8.547918569 8.337073849 8.055361321 8.572594997 8.312004157 8.593611249 8.812356743 8.052002126 37726810 dsrA Sulphur sulfite reductase uncultured prokaryote 8.924006285 8.750586576 9.070826479 8.583355783 8.722346047 8.556700912 8.217572767 8.590672547 8.231619712 8.531250871 8.45716203 8.839769343 110677777 dnaK Stress Heat shock Roseobacter denitrificans OCh 114 9.027432449 9.02659949 9.043189744 8.945060418 8.934570581 8.946654254 9.623689507 8.924753565 9.376228334 8.728693651 8.678330605 8.843459552 214042743 pcc Carbon cycling Carbon fixation Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 10.41634701 10.06042365 10.30725995 9.211929322 9.136515117 9.057346771 46115014 tftH Organic Remediation Aromatics Chlorinated aromatics Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 9.607868544 9.733878546 9.967600828 9.867704914 10.09840913 9.863920486 9.704889348 10.4622065 9.828445316 10.29844314 10.05800512 10.18824859 118046477 trzE Organic Remediation Herbicides related compound Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 8.623346523 8.596363291 8.98463528 8.250906099 8.266392899 8.225984382 8.215279265 7.8848603 8.176351289 8.321863038 8.216500934 8.152160197 153003295 pstB Stress Phosphate limitation Anaeromyxobacter sp. Fw109-5 10.97435917 10.77028226 10.84192532 10.70951156 10.90101269 10.95069593 10.7108813 10.8314255 10.91867128 10.78283718 10.91738198 10.76849186 148653300 iro virulence Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 8.900793933 8.661166461 8.837819503 8.045048752 8.04451803 8.095575305 7.634439361 7.862255749 8.312232008 7.791810388 7.858889691 8.054608729 153897524 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Methylobacterium extorquens PA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 8.892712821 8.890569748 9.01248272 8.900543244 8.897279487 8.351714273 8.976817434 9.341308765 9.104083468 8.961115113 8.82152656 8.972880687 151937130 pimF Organic Remediation Aromatics Aromatic carboxylic acid Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.509117396 8.267530155 8.470434548 8.401894335 8.239494895 8.185927727 8.21668527 8.833577644 8.586632364 8.530295688 8.359419251 8.619597025 163731620 phn Organic Remediation Herbicides related compound Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 8.750281461 8.444113266 8.527781578 8.004694152 7.943546819 7.850110823 7.598168062 7.51558631 8.081581555 7.535864205 7.454365178 7.877446497 116227381 sigma_24 Stress Sigma factors Candidatus Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 8.335187029 8.64669901 8.268466867 8.420916231 8.443648266 8.297269228 8.283137128 8.562767135 8.594206679 8.418847548 8.386027507 8.19886743 115617205 mdlB Organic Remediation Aromatics Aromatic carboxylic acid Strongylocentrotus purpuratus superkingdom:Eukaryota;kingdom:Metazoa;phylum:Echinodermata;class:Echinoidea;order:Echinoida;family:Strongylocentrotidae;genus:Strongylocentrotus; 8.137695529 8.122514256 7.8261997 7.816710926 7.7403295 7.463579052 7.922992191 7.967787885 7.839483376 7.773431442 7.777388392 88805218 ppx Phosphorus Phosphorus utilization Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 7.774790246 7.855248302 7.737007176 7.200769799 7.790236802 7.842032995 7.737838546 7.476967726 7.531339166 46200846 sigma_24 Stress Sigma factors Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 9.080404015 9.022168633 8.889941975 8.747679394 8.522270339 8.77226073 8.995251082 8.663809689 8.856574261 8.731538184 8.855647907 8.646636388 145317841 cellobiase Carbon cycling Carbon degradation Cellulose Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 8.999759613 9.006580837 8.947882611 8.552556568 8.510474103 8.684069903 8.359535083 8.496645764 8.438515997 8.482212202 8.635877298 154250930 pimF Organic Remediation Aromatics Aromatic carboxylic acid Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 9.47228188 9.639664444 9.339991375 9.619495784 9.456675651 9.358817511 9.807072164 9.81477862 9.277011333 9.828807297 9.853025051 9.555406348 218779578 tutFDG Organic Remediation Aromatics BTEX and related aromatics Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 8.878268795 8.729270578 8.746338318 8.425840482 8.380836514 8.136532164 8.174270912 8.402104612 8.349594234 8.332672126 8.296790356 8.146628605 94471161 narG Nitrogen Denitrification uncultured bacterium 8.156557004 8.14685012 8.39050152 8.223717365 8.065983555 7.879611369 7.460990863 8.178489759 8.044850877 7.73762554 8.031843381 7.782739586 268589720 SMR_antibiotics Antibiotic resistance transporter Providencia rettgeri DSM 1131 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rettgeri; 9.153348787 9.13896501 8.577780287 8.322507336 8.302984346 7.991397565 8.241226698 8.083660058 7.972929225 8.544003854 119525483 nplT Carbon cycling Carbon degradation Starch Thermofilum pendens Hrk 5 10.08145699 10.19697014 9.990813368 9.225722063 9.287961287 9.31067877 9.73028346 9.055656156 9.770988649 9.37895377 9.482592091 9.614017093 29652454 narG Nitrogen Denitrification uncultured bacterium 9.989503527 10.0420684 10.02910285 9.241158559 9.253425765 9.336827794 83726035 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia solanacearum UW551 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 8.237415313 8.044979655 8.186558069 8.076586641 7.868234515 7.767195385 7.840808874 7.751292448 8.310452617 7.76018963 7.773625712 7.892717926 261371012 dsrB Sulphur sulfite reductase Fibrobacter succinogenes subsp. succinogenes S85 9.497395184 9.297138773 9.476390793 8.645066665 8.60542417 8.521457689 8.6900895 8.378708382 8.565886973 8.515346608 8.648217934 8.737907025 224531906 pstC Stress Phosphate limitation Borrelia valaisiana VS116 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Spirochaetaceae;genus:Borrelia;species:Borrelia valaisiana; 9.141294413 8.914500427 8.917740063 8.499730802 8.338408371 8.29749315 8.255400848 7.753320797 8.415828193 8.051307603 7.9840309 8.351767973 197210245 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 9.700783901 9.407155478 9.312300221 9.734861295 9.468132715 9.393547452 170121450 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Escherichia albertii TW07627 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 8.613098099 8.497388779 8.779532616 8.255574325 7.800463692 7.882664224 7.529554067 7.61200081 7.702063156 7.503814622 7.997004193 167350654 sigma_24 Stress Sigma factors Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.444300416 8.363223752 8.548614178 8.207805626 8.316588598 8.167952882 8.277290709 8.5979238 8.410695646 8.501563771 8.387227124 91977420 ppx Phosphorus Phosphorus utilization Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.085173 8.032781716 8.326809266 7.23290915 7.360734311 7.267073756 7.319509255 6.984478006 7.704837598 40846254 bphA Organic Remediation Aromatics Polycyclic aromatics Rhodococcus sp. DK17 9.282477903 9.112155196 9.055462792 8.907776682 8.931804836 8.730741485 8.490511388 8.867360027 8.719699443 8.860118709 9.00373434 8.938063503 115258222 ChnA Organic Remediation Other Hydrocarbons Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 9.280024992 9.063143201 9.101236056 9.268578877 9.152961115 9.049835264 9.221269293 9.207309222 9.461277197 8.874427469 8.980015949 8.970168993 147886048 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured bacterium 10.34731019 9.902318133 9.822813288 9.95005393 9.93978144 9.714380645 9.856916682 9.618964041 9.602751342 9.657631936 9.895571917 9.760388523 269796461 pstC Stress Phosphate limitation Sanguibacter keddieii DSM 10542 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Sanguibacteraceae;genus:Sanguibacter;species:Sanguibacter keddieii; 9.631636876 9.670243525 9.510089977 9.212429294 9.26729446 9.543601918 10.001995 9.410478145 9.696308892 9.345343453 9.26884749 9.264772212 119880084 nmoA Organic Remediation Aromatics Nitoaromatics Salinispora arenicola CNS205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 8.277491542 8.565877689 8.450837329 8.42935571 8.586724329 8.245492205 8.472210642 8.723436759 8.193569309 8.5006674 8.378402162 7.914857921 78186508 sigma_24 Stress Sigma factors Chlorobium luteolum DSM 273 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon luteolum; 8.850879336 9.231975329 9.079142883 9.299469834 9.72347545 9.255701131 9.392081417 10.0769813 9.199439844 9.626742816 9.439878885 9.484737001 60476334 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 9.004101829 8.960900178 9.186892819 8.94683469 8.798596683 8.456843517 8.792525401 9.237303176 8.734202076 9.115879701 9.154500753 9.163730251 153004239 cytochrome Energy process Energy process Anaeromyxobacter sp. Fw109-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 8.22132742 8.438946315 8.109402953 7.7350851 7.253082389 7.608420016 7.894140189 7.501737565 8.021561223 7.430810169 7.57557631 7.346641284 160355807 narI Stress Oxygen limitation Bacillus selenitireducens MLS10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus selenitireducens; 8.112228965 8.138675266 7.773488904 7.5907598 7.421821727 7.299770119 7.144931412 7.872371193 7.199873633 7.488863802 218294691 catB Organic Remediation Aromatics BTEX and related aromatics Thermus aquaticus Y51MC23 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus aquaticus; 8.634313008 8.2895489 8.751050411 8.050516227 7.981817221 8.086853074 8.36796054 8.075871333 8.406325056 7.853942288 8.1522423 8.073003543 186685312 katE Stress Oxygen stress Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 6.912590713 7.228499115 206890271 nrfA Nitrogen Dissimilatory N reduction Thermodesulfovibrio yellowstonii DSM 11347 superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Thermodesulfovibrio;species:Thermodesulfovibrio yellowstonii; 7.260523753 7.396089727 7.197068397 148555916 SMR_antibiotics Antibiotic resistance transporter Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 9.411861989 9.637015415 9.455545201 8.841002185 9.076869356 9.613844852 10.05733054 9.354078547 9.805317013 9.3092731 9.304825578 9.61807356 73697390 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 8.880719948 8.590823528 8.723848792 8.046094617 7.778749033 7.878153195 7.591672382 7.596590875 7.95901172 7.378634838 7.514006508 7.82508031 77378585 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.74794915 8.566077166 8.843448939 8.447628477 8.200496932 7.765667773 8.56195395 8.253747083 8.439872753 8.277261533 8.252560222 8.090622073 116062724 narJ Stress Oxygen limitation Aeropyrum pernix K1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Aeropyrum;species:Aeropyrum pernix; 8.732644008 8.615517433 8.262620804 8.432315603 8.66943056 8.825263767 8.253902575 8.90946672 8.453636212 8.65824262 8.837128952 8.264347599 88811195 ahpC Stress Oxygen stress Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 9.50717736 9.46244218 9.409209046 8.740063269 8.768294722 8.787459943 8.57954917 8.394780002 8.68516844 8.594840104 8.411105149 8.826750063 254421108 AceA Carbon cycling Carbon degradation others Brevundimonas sp. BAL3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas; 9.128021911 8.722272234 8.153809316 8.997319644 9.01647575 8.792406025 9.093210645 8.956122981 8.736836293 8.558902215 8.695418365 8.247749182 152966132 nmoA Organic Remediation Aromatics Nitoaromatics Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 9.286122231 9.430079307 9.308474917 9.172712746 9.16149322 8.964168025 9.178325461 9.181296894 9.054636169 9.339733542 9.230262098 9.218272931 110819002 CDH Carbon cycling Carbon degradation Cellulose Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.463011707 8.287935668 8.819733216 8.534260591 8.487632669 8.320758138 8.498343903 8.864592377 8.456037805 9.087249387 8.928320008 9.148049234 218887920 dnaK Stress Heat shock Desulfovibrio vulgaris str. 'Miyazaki F' 8.95623004 8.755853294 8.668219795 8.474706193 8.504736531 9.065075698 8.720415167 9.23347825 8.52250664 8.573475034 8.42607336 89953008 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 9.075792229 8.910824314 8.897660197 8.015609057 8.884815831 8.939792007 9.189760673 8.084088874 9.173565731 8.484408785 8.596654287 8.664284496 191638640 glnR Stress Nitrogen limitation Lactobacillus casei BL23 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus casei; 8.12636884 7.879995706 7.621072578 7.644801982 7.605659132 7.609705801 8.056428592 7.692987631 7.861874626 7.643774895 186476874 ChrA Metal Resistance Chromium Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.674460781 8.260200891 8.195622058 8.372346088 8.2012797 8.026533795 8.433735653 8.325963678 8.35875203 8.246431188 8.533750855 8.416520365 29828928 clpC Stress Protein stress Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 10.4069087 9.112721517 8.829650528 10.41133698 10.34139748 10.04692066 10.31238581 10.15876633 9.708802654 10.12280363 10.07167242 9.7431139 56696014 ppx Phosphorus Phosphorus utilization Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 9.615566476 8.883024864 8.471307263 9.381021661 8.874174207 8.638091063 9.360704867 9.40051639 9.352393128 8.863255855 8.946372788 8.702329857 87199242 silC Metal Resistance Silver Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 8.380851968 8.06627938 8.195519634 8.432751569 8.335392388 7.866075953 7.937041343 8.375794466 8.295585015 8.255028498 7.928583245 8.226613064 29607183 ppx Phosphorus Phosphorus utilization Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 9.146311235 9.257670561 9.170738425 9.101751449 9.13967851 9.00627684 8.825002802 9.270975591 9.272325048 8.002391525 8.989893324 8.650195759 116633898 narG Nitrogen Denitrification uncultured bacterium 8.039498893 7.96862523 8.500836484 7.817662762 7.690110813 7.733082596 8.270159733 7.72795902 8.544548616 7.57264431 7.625144388 7.594720941 211584244 chnC Organic Remediation Other Hydrocarbons Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 9.471935491 9.489409443 9.309652054 8.695588854 8.571333159 8.519057672 8.700258433 8.531728727 8.661103648 8.159765039 8.383474375 8.866157098 261823383 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium wasabiae; 8.275945084 8.336134636 8.289756211 7.916860378 7.736952711 8.102243398 8.245600339 7.745954038 8.037274338 7.950320822 7.864436144 8.179074036 13472740 fnr Stress Oxygen stress Mesorhizobium loti MAFF303099 8.351943273 8.252579848 8.43213362 7.436413334 7.627643939 7.675454972 7.638278828 7.067953823 8.094528287 7.184544086 7.132361371 7.795307281 29833938 amyA Carbon cycling Carbon degradation Starch Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 8.646021597 8.463271085 8.369064778 8.169592705 7.915972486 7.947411182 8.014883313 7.674032279 7.848194955 7.840475351 8.131424945 170287901 gyrB other category gyrB Thermotoga sp. RQ2 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga; 7.9282401 8.017107619 8.154064346 7.351391077 7.247139052 7.199370038 6.907822966 7.621090848 7.278336335 7.013724566 7.078019692 268309813 pstC Stress Phosphate limitation Thermomonospora curvata DSM 43183 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora;species:Thermomonospora curvata; 9.742721714 9.770379874 9.912871781 9.517155332 9.412994399 9.496945266 9.265984697 9.040735935 9.292503957 9.312125694 9.556362723 9.468272158 256666794 AceB Carbon cycling Carbon degradation others Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.872319325 8.816670557 8.629829569 8.892819264 8.9101248 9.236250739 8.924436839 8.726030605 8.611347574 9.091415143 8.890089438 146401756 rubisco Carbon cycling Carbon fixation Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 8.435763051 8.471615048 8.226488106 7.734618596 7.759979836 7.759885778 8.255790326 7.661896619 8.587475037 7.709144923 7.456578509 7.886736795 72120723 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 9.129572419 8.801323935 8.570289739 9.03813745 8.970217576 8.548805026 9.034219605 8.951032146 8.858949726 8.907397973 8.881933442 8.863254335 53756067 CadA Metal Resistance Cadmium Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 9.229028043 9.425338595 9.402380141 8.425790636 8.250158151 8.505191871 8.341592341 8.226690102 8.306599254 8.325278932 8.895596314 149808385 glnA Stress Nitrogen limitation Moritella sp. PE36 7.904235323 7.911613131 7.460866789 7.422745044 7.712837464 7.189148583 7.185950692 7.868081988 7.545663852 7.334935758 7.330783705 226093854 fnr Stress Oxygen stress Brevibacillus brevis NBRC 100599 8.376698983 8.451767106 8.556068918 7.745915873 7.633286085 7.736373451 7.233541453 6.96457707 7.475101671 7.256495176 7.586827413 145205127 sox Sulphur Sulphur oxidation Prosthecochloris vibrioformis DSM 265 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeovibrioides; 9.23293768 8.731132568 8.790507596 8.869229431 9.304413004 8.644525321 8.382196834 8.758575351 8.37210402 8.883880031 8.980676924 9.057832088 87301938 fnr Stress Oxygen stress Synechococcus sp. WH 5701 8.613721999 8.65101693 8.768942623 8.651584954 8.609215566 8.422870114 8.387388507 8.49506441 8.345506208 8.5208817 8.683243228 8.179769807 260914295 hly virulence hemolysin Pasteurella dagmatis ATCC 43325 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Pasteurella;species:Pasteurella dagmatis; 7.297915333 7.236983874 7.576706733 7.819733147 7.232650097 8.117224769 7.465639475 7.469914243 147677213 dnaK Stress Heat shock Pelotomaculum thermopropionicum SI 8.690834746 8.934832696 8.277659904 8.748604845 8.842738283 8.94442886 8.790115617 9.224770183 8.977922167 8.927009014 8.868469533 8.858857146 283810993 sigma_24 Stress Sigma factors Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 8.814896243 8.917085645 8.874275396 8.450106176 8.263080531 8.586269197 8.519674803 8.255747746 8.67821631 8.630224092 8.710520247 8.618452568 111281564 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 8.770981941 9.068903718 8.959298554 8.913415882 9.158695274 9.1132827 9.287762651 9.451486136 9.020865572 9.60412453 9.35769359 9.263552313 139478541 mer Metal Resistance Mercury uncultured soil bacterium superkingdom:Bacteria; 8.60523383 8.617475147 8.540530989 8.474411769 8.261207116 8.539443868 8.85579358 8.780586152 8.6282653 8.578177934 8.732684962 83368637 alkB Organic Remediation Other Hydrocarbons Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 8.60465523 8.234054235 8.551631704 8.292876226 8.016405778 8.521372036 8.323451042 8.321262844 8.531125562 8.525704436 8.520081697 125497235 pulA Carbon cycling Carbon degradation Starch Streptococcus sanguinis SK36 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus sanguinis; 8.95938591 8.662628056 8.956681382 8.824546932 8.317140543 8.147118898 8.141512031 8.16784178 8.371932965 7.917424758 8.144621669 93006469 ZntA Metal Resistance Zinc Psychrobacter cryohalolentis K5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter cryohalolentis; 8.502424958 8.361890922 8.035629507 8.249210823 8.236819032 8.058297855 8.406366923 7.880640511 7.981810134 8.210461878 8.159172934 186472722 pcaG Organic Remediation Aromatics Other aromatics Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.239414055 8.000849765 7.577241256 7.555398528 8.255138406 7.994567812 7.965221511 7.801978488 7.952622118 254477310 pstB Stress Phosphate limitation Ruegeria sp. R11 8.569867821 8.664382056 8.75930183 8.045532019 7.944197373 8.195232845 8.568430208 8.142792869 8.513015162 7.941093485 7.817994125 8.190127596 210069218 cadBD Metal Resistance Cadmium Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 8.743803347 8.462921624 8.733211194 7.903352682 7.798241002 7.785489476 7.636554859 7.68651139 7.896440254 7.344118793 8.168855967 161392212 pcaG Organic Remediation Aromatics Other aromatics Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 8.35171038 8.169558893 7.370055991 7.537147598 7.899992842 8.307468631 7.466267696 8.02879375 7.560740707 7.540669984 7.692140372 262334971 amyA Carbon cycling Carbon degradation Starch Rhodothermus marinus DSM 4252 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 8.145649265 8.047295546 7.983813557 7.928540297 7.684222318 7.812206027 7.575165676 8.107004467 7.936532881 7.847481937 7.756627559 89346302 narH Stress Oxygen limitation Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 8.133150077 8.022795461 7.703165646 7.745461819 7.642926996 7.671517435 7.918721061 8.008283718 7.867567955 7.84424651 7.966267773 118666821 nagL Organic Remediation Aromatics Aromatic carboxylic acid Delftia acidovorans SPH-1 8.665195459 8.701731568 8.648550123 8.092493112 7.988031523 8.11598467 8.297221765 8.076891884 8.548992775 7.956918838 8.043452123 8.038704849 119960760 nmoA Organic Remediation Aromatics Nitoaromatics Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 9.190538028 9.155513652 9.03104058 8.562739973 9.284905218 8.9782848 9.358276135 7.97813044 9.4122746 8.37378563 8.628813202 8.574153529 283782915 srt virulence surface protein Gardnerella vaginalis 409-05 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Gardnerella;species:Gardnerella vaginalis; 8.610634556 8.890862746 8.886073235 9.536156895 9.088369999 9.319987027 9.092183654 9.547222749 8.680864587 9.296780678 8.640801434 89053704 alkB Organic Remediation Other Hydrocarbons Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 9.069876455 9.079340729 9.159752592 8.63919869 8.617816082 8.412052847 8.904741264 8.748490647 8.688038132 9.078661361 8.990406134 261338340 pcc Carbon cycling Carbon fixation Bifidobacterium gallicum DSM 20093 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 9.547266529 9.643520832 9.320886347 9.480473041 9.42394365 9.117752131 9.674037017 9.540568536 9.41783174 9.553875395 9.491854213 9.158970169 146278690 hrcA Stress Heat shock Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 9.927898491 9.719032714 9.778702518 9.317946104 9.211476748 8.960460172 9.047300909 9.159941246 9.154222977 9.286198721 9.321626084 9.406874418 146277988 fnr Stress Oxygen stress Rhodobacter sphaeroides ATCC 17025 8.646215923 8.333775418 7.569365108 7.606669911 7.858778708 7.953898002 7.489402824 8.076030504 7.819320812 7.94837417 7.790656502 219569639 B_lactamase_A Antibiotic resistance Beta-lactamases Clostridium kluyveri NBRC 12016 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium kluyveri; 8.741541026 8.645517063 8.80328634 8.024274076 7.984333366 7.954706916 7.68719312 7.620165837 7.735175265 7.651218462 8.185665849 74317424 narI Stress Oxygen limitation Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 8.257065509 8.584198212 8.444833722 7.566286552 8.025846623 8.233031093 8.292270746 7.778116041 8.41777673 7.874447756 7.777554497 8.097785762 212529480 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 8.628756542 8.458517735 8.629584867 7.926598769 7.526066263 7.664993192 7.226097523 7.606195201 7.58140554 7.255116446 8.063876011 116804528 nasA Nitrogen Assimilatory N reduction uncultured prokaryote 8.315675803 8.068232696 7.713784207 7.779362695 7.865219576 7.337868218 7.874518251 7.971804499 8.00345958 8.067493099 8.198299853 194595542 pstA Stress Phosphate limitation Halomonas sp. HAL1 7.34380705 7.434249072 7.531970956 7.294078952 7.986094172 7.278307546 7.609862202 7.562969518 119718326 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.964265169 8.919596413 8.836099895 8.617032504 8.620946586 8.406162429 8.277747465 8.578370398 8.319291009 8.716054867 8.868726347 8.613278196 26278878 narG Nitrogen Denitrification uncultured bacterium 9.498301354 9.141874249 9.251790647 8.822397034 8.615637486 8.753101006 8.838900824 8.574285852 8.781696508 8.803065121 9.035308159 8.81607304 221633906 amyA Carbon cycling Carbon degradation Starch Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 8.755524091 8.372105805 8.853465044 8.672716397 8.456737837 8.571979037 8.224707488 8.56587044 8.278541785 8.406096784 8.562191467 8.622839167 121592542 pimF Organic Remediation Aromatics Aromatic carboxylic acid Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 9.150561497 9.247885529 9.342455697 8.88997162 8.725051563 8.880810595 9.047937436 8.745073807 8.826924965 8.559404926 8.790198204 8.935632054 224712626 hao Nitrogen Nitrification uncultured planctomycete 8.70535012 8.250376568 8.588283625 8.012361315 7.85188353 7.80022744 7.398946509 7.826756627 8.020923127 7.944396689 8.15664804 149142369 SMR_antibiotics Antibiotic resistance transporter Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 9.294144843 9.141693352 9.203982436 8.887281463 8.81158745 8.990634848 8.625938922 8.781764429 8.691508909 8.775398438 8.908007226 9.033312952 16127191 limEH Carbon cycling Carbon degradation Others Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 8.444266453 8.406837947 8.075367622 7.75577063 7.816553911 7.958171583 8.368082818 8.250673345 7.975510004 7.609145174 8.04019251 166086952 pstS Stress Phosphate limitation Microcystis aeruginosa NIES-843 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 9.411087155 9.325766709 9.18935154 8.555186307 8.550450449 8.530560284 9.098501519 8.579837091 9.41983769 8.376052089 8.102353657 8.449728048 33326777 bco Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. CIB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 9.073739711 8.866724191 9.193601018 8.609210609 8.477315658 8.591204486 8.328632348 8.391186244 8.542796086 8.502252941 8.533049112 8.556384669 226228129 sigma_24 Stress Sigma factors Gemmatimonas aurantiaca T-27 superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 8.101219028 8.192777243 7.652530803 6.697684602 7.232586774 7.287574417 7.595349214 110833406 narH Stress Oxygen limitation Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 10.61377036 10.63962997 10.69968376 10.91671477 10.86696718 10.62461039 10.93957029 10.82269127 10.72692852 10.94568177 10.80249724 10.45274912 225168858 dsrA Sulphur sulfite reductase Dethiobacter alkaliphilus AHT 1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Syntrophomonadaceae;genus:Dethiobacter;species:Dethiobacter alkaliphilus; 8.198688447 8.100322445 8.421995841 7.939744897 7.877085852 7.792033754 7.983239449 7.640405842 7.901743301 8.115529289 7.74983349 7.780304832 198248901 hrcA Stress Heat shock Acidithiobacillus ferrooxidans ATCC 53993 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 8.193987195 8.020455377 8.23489256 8.624551901 8.514225446 8.066882474 8.345717142 8.368281346 8.084672322 8.484302913 8.491997555 8.105587679 70930916 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.845952672 8.614727111 8.854431125 8.313814075 8.204698639 8.057480803 7.989516591 8.361126373 8.150879771 8.200796766 8.199695694 8.575288023 50545998 GroES Stress Heat shock Yarrowia lipolytica superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Dipodascaceae;genus:Yarrowia;species:Yarrowia lipolytica; 8.659623575 8.673799755 8.409184228 8.798558176 8.710321827 8.139043349 8.694920581 8.480199913 8.586260312 8.424378184 8.249656039 115369656 pilin virulence pilin Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 8.875072159 8.90396378 8.555136287 8.394927799 8.373184358 8.415726652 8.559148327 8.504559274 8.493565865 8.599037668 8.799851293 16262669 mdlB Organic Remediation Aromatics Aromatic carboxylic acid Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 8.835555163 8.824398097 8.885593936 8.44915955 8.067652809 7.99311891 8.094388477 8.212176435 8.130317614 8.303026267 8.459092505 74421962 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Nitrobacter winogradskyi Nb-255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 8.175591676 8.481522766 7.706950867 7.736821955 8.219277301 7.530514825 7.725687073 7.480883252 7.872367496 194597049 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 8.567888388 8.345756876 8.579735294 8.726906522 8.503008557 8.201225782 8.761548433 8.350002977 8.546041445 8.784592339 8.554769454 219945805 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 8.185651521 8.397527002 8.35129587 7.727694227 7.768814167 8.288463224 8.203897669 8.056026895 8.060028997 8.147348494 8.228300909 197627333 sigma_70 Stress Sigma factors Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 8.45056526 8.04052756 8.152895347 7.768707142 7.941757768 8.033545578 7.931528496 7.747150174 8.152766046 7.809180565 7.713836804 7.677258465 239624450 pstS Stress Phosphate limitation Clostridiales bacterium 1_7_47_FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales; 8.911666834 8.980264197 9.012958524 8.576278426 8.291616331 8.378098482 8.3086441 8.658313744 8.749167182 8.768094627 8.861238533 94425274 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.967033353 8.402229944 8.528980728 9.041113812 8.926590777 8.972636035 8.424557223 8.905631192 8.52838654 8.783460932 8.757911933 8.305015749 4760687 scaffold Bacteria phage STRUCTURAL Vibrio phage KVP40 order:Caudovirales;family:Myoviridae;genus:T4-like viruses;species:Vibrio phage nt-1 sensu lato; 8.941860294 8.697808096 9.029564004 8.380289608 8.248153554 8.409980498 8.196629784 7.857691593 8.318568926 8.266572719 8.303095183 8.47988983 206686013 xlnD Organic Remediation Aromatics Other aromatics Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.245549711 7.980401833 8.660458357 8.08805956 8.007415816 7.909849083 7.913752374 7.62518071 8.111257084 7.868113069 7.431233324 8.039618331 84382815 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 9.389853851 9.487152808 9.423085335 8.994544271 8.948632124 8.868547003 8.653334102 8.867056427 8.743792774 8.832738564 8.906862446 9.180500414 254547564 RNA_dependent__RNA_polymerase Bacteria phage REPLICATION Enterobacteria phage BZ13 family:Leviviridae;genus:Levivirus; 8.178708903 8.32741782 7.785589393 7.517205493 7.299409146 7.104161747 6.99863438 7.146483653 7.300120962 7.312936904 192360493 sigma_24 Stress Sigma factors Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 7.840107357 7.524501636 7.33469818 7.223206509 7.18805296 7.494070794 7.361458067 7.50773044 7.808767752 148806816 tfdB Organic Remediation Aromatics Chlorinated aromatics Bradyrhizobium sp. RD5-C2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.331828461 8.075632543 8.220490551 7.839326222 7.74508847 7.524499603 7.351664369 7.509909429 7.716579678 7.779755683 7.732553242 7.649994019 34102158 obgE Stress Radiation stress Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 9.189986206 9.186632436 8.985183063 8.976626045 8.910787182 8.825006603 9.215930372 9.106855217 8.877136105 9.203436776 9.07403272 9.040447954 163855423 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 8.919152265 8.54159293 8.357939099 8.241723025 8.171096986 8.414094252 8.316585457 8.350807224 8.4877195 167746240 amyA Carbon cycling Carbon degradation Starch Anaerostipes caccae DSM 14662 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Anaerostipes;species:Anaerostipes caccae; 8.61567725 8.687387415 8.874483169 8.129487854 8.206218146 8.045155789 8.011786375 8.200258236 8.178151178 8.081761667 8.291456184 222147618 glnA Stress Nitrogen limitation Agrobacterium vitis S4 8.361491214 8.442323507 8.362981152 8.211637877 7.801932501 7.61681043 8.180376255 8.315894722 7.987059084 7.91249127 8.186827449 170938592 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 9.058531788 8.754090128 8.975026433 9.133013515 8.927710764 8.551750653 8.996045813 9.003865128 8.771678934 8.844220016 8.977100768 8.435282363 187481862 pulA Carbon cycling Carbon degradation Starch Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 9.098493551 9.046738642 9.084536709 8.542500393 8.472349433 8.359490342 8.519631266 8.438541115 8.452044234 8.687086059 8.21304417 8.63350811 117624076 SMR_antibiotics Antibiotic resistance transporter Escherichia coli APEC O1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 8.833646761 9.010128211 8.892600681 8.252784786 8.432368599 8.71782508 8.959088862 8.628463403 8.501264227 8.426268306 8.637840017 8.45798653 119958183 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 9.846025002 9.728156267 9.673902656 9.686108695 9.379445398 9.11112751 9.159405336 9.288396388 9.307208262 9.297385356 9.210229434 9.406451145 114334095 srt virulence surface protein Shewanella frigidimarina NCIMB 400 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella frigidimarina; 8.516776927 8.632759802 8.814201229 8.158192475 8.618172112 8.109123757 7.662786748 7.481792827 8.000680426 8.232457782 7.96016207 8.094861946 218428805 cap virulence capsule Escherichia coli ED1a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 8.806184708 9.129116528 8.321150245 7.514592448 7.94905967 7.534135829 7.302796662 8.196727477 8.174438463 8.290369496 150955710 TehB Metal Resistance Tellurium Klebsiella pneumoniae subsp. pneumoniae MGH 78578 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 8.376544476 8.2320254 8.015901017 8.985224498 8.576956073 8.250027508 8.586298902 8.477293358 8.491080967 8.390888553 8.454774939 7.783848438 228564323 type_III_secretion virulence secretion Dethiosulfovibrio peptidovorans DSM 11002 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Dethiosulfovibrio;species:Dethiosulfovibrio peptidovorans; 8.598050256 8.510670217 8.335493457 8.079794325 8.265240537 8.368420046 8.407793119 8.403873644 8.599335572 8.849868958 8.65588142 8.709906479 169793522 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 8.584154333 8.730603256 8.938080126 8.597195202 8.527549461 8.442761862 8.30086884 8.426523675 8.196386132 8.513138314 8.327068886 8.014427738 56677958 fnr Stress Oxygen stress Ruegeria pomeroyi DSS-3 8.695291463 8.971774741 8.70717224 8.724362694 8.738072781 8.553257852 8.533622572 8.918229106 8.949157167 8.793794578 8.798792569 8.697358113 257063744 hrcA Stress Heat shock Slackia heliotrinireducens DSM 20476 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Slackia;species:Slackia heliotrinireducens; 7.367906483 7.467735662 8.049491834 8.063470116 7.545935782 8.010635054 7.490480619 7.564052634 7.666770832 81428587 gyrB other category gyrB Lactobacillus sakei subsp. sakei 23K superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus sakei; 8.270665134 7.895726082 8.25073899 7.429328694 7.458122386 7.252514175 7.184612655 7.072815494 7.750676527 7.145779616 7.22145569 7.348434357 257388961 endochitinase Carbon cycling Carbon degradation Chitin Halomicrobium mukohataei DSM 12286 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halomicrobium;species:Halomicrobium mukohataei; 8.848098678 9.182545513 8.932486619 8.546924136 8.23974499 8.630717359 8.567805411 7.963244949 8.778678307 8.329694471 8.571776055 8.109301819 89335313 Ni_Fe_hydrogenase Energy process Energy process Desulfitobacterium hafniense Y51 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 8.466705674 8.382472566 8.593578759 7.936467274 7.830492175 7.658127154 7.573395957 7.3482348 7.645067455 7.465415023 7.902515191 149921526 Catechol Organic Remediation Aromatics Other aromatics Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 8.355569246 8.644262331 8.218635309 8.035518103 8.249811382 8.564712914 8.666042747 8.292202479 8.593527113 8.221173906 8.132335355 8.32127134 262334914 pstC Stress Phosphate limitation Rhodothermus marinus DSM 4252 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 8.81096942 9.004823145 9.004918506 8.680141319 8.782854814 8.605054311 8.290380439 8.669507013 8.226775276 8.639674285 8.782222123 8.707285685 258635090 proV Stress Osmotic stress Pantoea sp. At-9b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 8.367534249 8.353331238 8.644527217 8.099540234 8.099739253 7.988462048 7.507520401 7.940605722 8.012158414 8.29180972 7.994987842 121593857 CopA Metal Resistance Copper Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 7.764967627 7.690518708 7.436411501 7.47038311 7.568933342 7.689228898 7.339704809 7.317724168 7.367010792 28871420 pectinase Carbon cycling Carbon degradation Pectin Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 7.804190668 7.983253304 7.92593442 8.020214701 7.810081183 7.993426728 7.632408156 7.834824834 7.831823503 229787058 glnR Stress Nitrogen limitation Catonella morbi ATCC 51271 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Catonella;species:Catonella morbi; 8.611482774 8.665725407 8.701281125 8.737444415 8.891460093 8.984815494 8.60127518 8.832000602 8.746556415 8.893023189 9.153914661 8.747730764 254266625 sox Sulphur Sulphur oxidation Methylobacterium extorquens DM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 8.439942786 8.747494733 8.288160121 8.735051338 8.501527255 8.866015171 8.866966574 8.620888961 8.944617045 8.843413191 8.442706821 283795929 cap virulence capsule Clostridium sp. M62/1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 8.596647462 8.199256295 8.189401546 8.21246835 8.262949802 7.985514926 7.834769636 8.082204731 8.250871409 7.962301849 8.020392737 7.982800843 66766503 xylanase Carbon cycling Carbon degradation Hemicellulose Xanthomonas campestris pv. campestris str. 8004 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 8.790815263 9.013276403 8.74451953 9.533673457 8.590094956 8.131269006 9.083402704 9.095364991 8.815790526 8.521246332 8.548345335 109698772 mauAB Organic Remediation Herbicides related compound Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 8.394628473 8.689226558 8.356279059 8.012148607 8.085552186 8.308793654 8.858472449 7.839519308 8.683233436 7.587817848 7.862219539 8.293013494 139478539 mer Metal Resistance Mercury uncultured soil bacterium superkingdom:Bacteria; 8.74786139 8.834671759 8.566912422 8.489601904 8.228455947 8.184401448 8.628113885 8.153178623 8.280203128 8.112872987 8.403098337 8.380896138 85672452 BchY other category chlorophyllide reductase Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 9.023692631 8.864828885 8.987494878 8.93635243 8.722478052 8.75901277 8.894820962 9.039846998 8.781719 8.986845559 9.02084445 8.788624339 169827834 SMR_antibiotics Antibiotic resistance transporter Lysinibacillus sphaericus C3-41 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Lysinibacillus;species:Lysinibacillus sphaericus; 8.498716092 8.129597667 8.465173642 7.880372858 7.606356617 7.591546435 7.376739892 7.667954566 7.865491203 7.486948465 7.403441296 7.973048006 194312211 ahpC Stress Oxygen stress Prosthecochloris aestuarii DSM 271 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Prosthecochloris;species:Prosthecochloris aestuarii; 7.509368309 6.785495174 7.327836758 7.350400623 7.217180632 7.208333582 7.008007171 7.148839603 27353880 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 9.992187731 9.622326777 9.568171984 9.273940954 9.432956481 9.610563927 9.094426222 9.505590228 9.164751554 9.469940829 10.03865778 9.404812761 219869061 katE Stress Oxygen stress Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 8.413258912 8.117115618 8.091457101 8.20556165 8.18004175 8.188980447 7.705933211 8.396015729 8.126713071 8.121015572 8.282201342 8.298421064 15840506 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium tuberculosis CDC1551 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 8.04857449 7.839988118 7.906161887 7.421217987 8.099133589 7.888209978 7.69257804 7.98000952 163854334 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 8.370473528 8.332305168 8.657222073 8.703871072 8.565895939 8.470274043 8.45711559 8.977230811 8.552867401 8.459149365 8.492850689 8.668032358 94312824 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.38895395 8.425781316 8.605951894 8.117958735 8.213350784 8.112002927 8.134886927 8.449273209 8.305432406 8.431967274 8.123985319 8.120817642 15842603 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium tuberculosis CDC1551 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 8.762745691 9.140295686 8.838944348 9.097603202 9.025712367 8.855064974 9.260089659 9.371288206 8.945557937 9.493717018 9.375226905 9.139134185 72117921 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.888244592 8.94688577 9.28980029 8.321900832 8.223975559 8.875134641 8.8506395 8.576804252 8.856192859 9.03195474 9.017835661 9.277485504 115520240 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.121377273 9.135071569 8.964881587 8.752412455 8.336929313 8.425852487 8.752226745 9.014314908 8.518313755 9.291123254 9.391494991 8.983962855 223690011 ArsC Metal Resistance Arsenic Desulfobacterium autotrophicum HRM2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium;species:Desulfobacterium autotrophicum; 8.427825829 8.425655452 8.508479878 7.939851291 7.787793272 7.776510204 7.38770819 7.373522218 7.832841355 7.797346903 7.869033385 8.016622512 163857292 SMR_antibiotics Antibiotic resistance transporter Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 9.234353137 9.605921334 9.032086187 10.04343606 10.01585175 9.904548159 9.661777641 10.28171521 9.359711874 9.902630129 9.904425478 259418443 cydB Stress Oxygen limitation Silicibacter sp. TrichCH4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8.568316088 8.67854885 8.346825899 8.490820327 8.489670427 8.608562006 7.946664199 8.697775383 8.451559885 8.392800946 8.539433108 8.151312645 149823212 ahpF Stress Oxygen stress Limnobacter sp. MED105 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 8.290679451 8.178839236 8.219280006 7.213903634 7.396717631 7.610473427 8.141417362 7.119992288 8.226336012 7.632315812 7.443250489 7.797078453 99037713 nbaC Organic Remediation Aromatics Nitoaromatics Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8.477410648 8.428029419 8.330186588 8.024370751 7.787061398 7.898745072 7.531513685 7.841975816 7.804260141 7.980665748 7.875092991 8.012746082 32307941 narG Nitrogen Denitrification uncultured bacterium 8.87658358 8.77652206 8.585498405 8.020325628 8.118031985 8.451986082 8.728430823 8.934993617 8.218543383 7.96898296 8.143157204 111152079 glnA Stress Nitrogen limitation Frankia alni ACN14a 9.130385246 9.046619288 9.14414652 8.608095978 8.155393713 8.735275195 8.866863477 8.310102766 8.797887389 8.662432653 8.850266031 8.884960464 148253971 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 9.051569226 9.192674952 9.196106083 8.956672319 9.018777851 9.323021595 9.706385673 9.280178094 9.651129011 9.000430195 8.984060375 9.367459301 154151957 pstA Stress Phosphate limitation Candidatus Methanoregula boonei 6A8 8.61444222 8.982638391 8.935735195 8.486225746 8.426981151 8.463255703 8.417422451 8.97775165 8.564105398 8.298997418 8.244955717 209883189 ArsC Metal Resistance Arsenic Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 8.395199526 8.195987099 8.182404498 7.630792554 7.936101498 8.092291345 7.771296421 7.866236233 8.237416171 7.929485432 7.965782252 7.783673748 91781192 bphF1 Organic Remediation Aromatics Polycyclic aromatics Burkholderia xenovorans LB400 8.650011711 8.807099592 8.986633728 8.396535831 8.341783326 8.202638519 8.629965774 8.273037063 8.850452572 8.304641269 8.450982695 8.024549692 258526014 phoB Stress Phosphate limitation Desulfurivibrio alkaliphilus AHT2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfurivibrio;species:Desulfurivibrio alkaliphilus; 8.502865593 8.281892641 8.179708631 8.721944132 8.593287634 8.178282613 8.595131997 8.304116536 8.168192784 8.115443403 125714545 ureC Nitrogen Ammonification Clostridium thermocellum ATCC 27405 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 8.864026147 8.465066476 8.780436484 7.841954807 8.013597022 8.075499857 7.530625191 8.618190493 8.156253415 7.741885602 7.988288759 21106440 vanA Carbon cycling Carbon degradation Others Xanthomonas axonopodis pv. citri str. 306 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas axonopodis; 9.011054762 9.011975462 8.621657657 8.283774435 8.631491381 8.810799164 8.518851953 8.902020313 8.614342471 8.561755258 8.446479527 145221900 katE Stress Oxygen stress Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.605081972 8.774865478 8.46304672 8.38367901 8.263719485 8.584197228 8.554665942 8.536559589 8.496223375 8.771473901 8.726690452 8.42822549 iegcoxL14 CODH Carbon cycling Carbon fixation 7.596330952 7.471379753 7.260841971 7.558124941 7.033979294 7.274011265 227495998 sigma_70 Stress Sigma factors Actinomyces urogenitalis DSM 15434 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces urogenitalis; 7.273586538 7.787441133 7.497546246 7.220986438 7.136031635 7.19361483 169825757 katE Stress Oxygen stress Lysinibacillus sphaericus C3-41 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Lysinibacillus;species:Lysinibacillus sphaericus; 8.862534784 8.701804576 9.201900619 8.2209363 8.024281469 8.119419406 7.695200694 7.691310126 8.00303632 8.123505508 7.97048722 8.287590534 145573712 pcaG Organic Remediation Aromatics Other aromatics Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 8.827477072 8.686383848 8.444718429 8.123897889 8.092502834 8.396470624 8.473266167 8.253379525 8.700439605 8.332243592 8.247409136 8.199500842 160917698 narG Nitrogen Denitrification uncultured bacterium 8.876142515 8.7771735 8.643408063 8.271609998 8.119782063 8.125845387 8.024909288 7.986351422 8.437995714 8.134365213 7.863264266 8.260921522 227548396 opuE Stress Osmotic stress Corynebacterium lipophiloflavum DSM 44291 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium lipophiloflavum; 8.502489045 8.549834561 8.637830038 8.798337772 8.692207817 8.717288028 8.176367026 8.713730854 8.411706754 8.686971459 8.719976136 8.074930411 238590826 endochitinase Carbon cycling Carbon degradation Chitin Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 8.542224206 8.153724955 8.449161019 7.919463511 7.806121042 7.671503434 7.194362666 7.428300284 7.754957177 7.726039292 7.3388982 7.951926312 68262858 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium jeikeium K411 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 8.82667204 8.827801383 8.918993841 8.969455923 8.982941117 8.782213605 9.01655376 9.218014832 9.053605786 9.072307691 8.798268535 8.836084874 218886294 hrcA Stress Heat shock Desulfovibrio vulgaris str. 'Miyazaki F' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 8.706500714 8.59976583 8.610966788 8.49104618 8.614404894 8.287475821 8.676970649 8.711204853 8.533201117 8.774580868 8.558013077 8.49349901 12407459 katE Stress Oxygen stress Cladosporium fulvum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Capnodiales;family:Mycosphaerellaceae;genus:Passalora; 9.261019324 9.34381357 9.330998267 9.448617558 9.328689481 9.063708577 9.278805599 9.48963569 9.307048835 9.382782478 9.299857882 9.141393021 258544376 grpE Stress Heat shock Cardiobacterium hominis ATCC 15826 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Cardiobacteriales;family:Cardiobacteriaceae;genus:Cardiobacterium;species:Cardiobacterium hominis; 8.271914453 8.194887714 7.950211137 8.042419691 8.26472823 8.393932185 8.048825099 7.867636831 8.137873159 154246839 merB Metal Resistance Mercury Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 12.04220589 10.05003646 10.04717127 9.618462748 9.332762953 9.353680732 9.52828935 9.444939065 9.564269237 9.526474823 9.549095755 9.47854328 17936554 Arylest Organic Remediation Aromatics Other aromatics Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 9.015919096 9.156271212 8.612065419 8.632903777 8.299090618 8.246616442 8.381866952 8.42431865 8.373075798 8.340557684 8.682749279 63081994 nosZ Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 9.388824021 9.592009215 9.907015521 10.00837554 9.869759544 9.339480919 9.638318451 10.18508954 9.78876974 9.96133255 9.678931297 10.14468477 170742380 hrcA Stress Heat shock Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 8.29574692 8.038868435 8.007624818 8.165468717 8.001050787 8.045570925 7.950581213 7.720498068 7.631871723 84667494 gyrB other category gyrB Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.528399369 8.60239391 8.575112581 8.457233842 8.481539008 8.398042583 8.2012134 8.270661301 8.308228573 8.48314483 8.526901816 8.276873015 15603211 oxyR Stress Oxygen stress Pasteurella multocida subsp. multocida str. Pm70 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Pasteurella;species:Pasteurella multocida; 8.851111196 8.454799396 8.429516485 8.466494764 8.575491744 7.831904095 8.631465756 8.427002364 8.685872989 8.352942516 8.189251065 7.97466202 163797408 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 8.275573193 8.237831601 8.274541843 7.751225643 7.634561378 7.601461666 7.941888418 7.399765685 8.081783776 7.613451891 7.502520257 7.859086905 269098180 sigma_24 Stress Sigma factors Sanguibacter keddieii DSM 10542 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Sanguibacteraceae;genus:Sanguibacter;species:Sanguibacter keddieii; 8.620751544 9.007235017 8.72243215 8.68811086 8.884615891 8.61902737 8.536863367 8.793571731 8.630297691 8.816749971 8.711664083 8.816807833 111280729 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 9.01903577 8.724586656 8.620661377 9.009177575 8.72994262 8.816348642 8.434945318 9.00426773 8.450928536 8.705475489 8.948735827 9.114018644 280957426 sigma_32 Stress Sigma factors Desulfovibrio aespoeensis Aspo-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio aespoeensis; 9.908610755 9.143374473 8.967345948 9.988801494 9.885180364 9.482624671 9.907098688 9.703272035 9.428001764 9.624768873 9.344958305 120402396 CadA Metal Resistance Cadmium Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 9.334178386 9.329759064 9.330383885 8.72392844 8.797720885 9.076402127 8.632678773 9.152532322 8.944057425 9.022765657 8.723913627 240010684 fnr Stress Oxygen stress Methylobacterium extorquens AM1 8.833364785 8.929626115 8.679266272 8.756882811 8.843454528 8.64861828 8.584493739 8.923407576 8.587010792 8.814800098 8.866511506 8.572360978 114739728 pstB Stress Phosphate limitation Hyphomonas neptunium ATCC 15444 8.873633121 8.502297454 8.747236636 8.773236731 8.80905331 8.903658625 8.615256254 8.587074795 198251191 AceB Carbon cycling Carbon degradation others Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 9.865439133 9.757220306 9.894187948 9.030234758 8.39661875 8.975244962 8.720615509 8.446163197 8.863391292 8.916083336 8.947871137 9.161817321 38232902 katE Stress Oxygen stress Corynebacterium diphtheriae NCTC 13129 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium diphtheriae; 8.815813318 8.354079135 8.368452323 8.789382657 8.463940802 8.114675756 8.607944655 8.584773432 8.755709251 8.323865682 8.132332085 8.023203407 253997827 ahpC Stress Oxygen stress Methylovorus sp. SIP3-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylovorus; 7.157714204 7.201242681 6.925046319 194340114 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 9.752472819 9.668243015 9.760700336 10.25671224 10.29015084 10.14448675 9.749227083 10.49738811 9.438556865 9.982023289 10.01117371 10.18205817 167629630 PceA Organic Remediation Others Heliobacterium modesticaldum Ice1 8.207616239 8.238800489 8.283319927 7.735661064 7.961404152 7.972443928 7.828621788 7.697960255 8.148399763 8.001096823 7.843736074 8.195622657 251788495 MFS_antibiotic Antibiotic resistance transporter Dickeya zeae Ech1591 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 8.28475996 8.510242495 7.913861416 7.699000437 7.772397074 7.749157453 7.531671223 7.906941208 8.519205551 237882275 amyA Carbon cycling Carbon degradation Starch Micromonospora sp. ATCC 39149 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 8.928192289 8.481193615 8.528254874 8.573703179 8.634012809 8.660983966 8.855939926 8.570248831 9.126473545 8.448210833 8.898377453 8.507491819 161389206 nhh Organic Remediation Aromatics Nitoaromatics Phaeobacter gallaeciensis BS107 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 10.12040289 10.03430315 9.68565176 9.740944586 9.753263766 9.760337544 9.458892454 9.909544235 9.370435731 9.792518436 9.895887568 9.655069785 86568498 katE Stress Oxygen stress Frankia sp. CcI3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 9.410201816 9.572821181 9.66245488 9.397776863 9.186080494 8.86186749 8.883941753 8.755850184 8.695247632 8.943194051 8.82505593 9.063843863 53687382 tfdA Organic Remediation Aromatics Chlorinated aromatics Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 8.14942011 7.917450496 7.002388625 7.145565423 7.056429735 6.93195309 7.06106845 15028601 cyc4 Bioleaching Electron transport Acidithiobacillus ferrooxidans 10.49540339 10.14412312 10.46096682 9.821531523 9.739942361 9.41452778 9.999154559 9.793872372 9.846571457 9.955672817 10.09530554 9.83849457 119226172 gyrB other category gyrB Rhodococcus erythropolis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7.664182191 7.230741865 7.362078509 7.246086255 88864128 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 9.134051921 9.076274353 9.170995867 8.542829141 8.775270216 9.002941676 9.06941666 8.67210311 8.970916404 8.927878561 8.917701708 9.120003906 29892860 alkH Organic Remediation Other Hydrocarbons Rhodococcus ruber superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.38743588 8.294018385 8.337250276 8.188371711 8.384678321 7.754182611 8.521728175 8.172643392 8.412327116 8.328967125 8.425146423 88702641 nosZ Nitrogen Denitrification uncultured soil bacterium superkingdom:Bacteria; 8.812198748 8.856963851 8.732792359 8.513939946 8.404555585 7.916680504 8.579969935 8.750093712 8.581816414 8.510416666 8.24348152 8.505064679 33391371 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.420852439 8.311697425 8.548384517 8.37302203 8.3133171 8.59184259 8.066189192 8.407975147 8.154056426 120406214 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 9.353464379 9.539165048 9.496082567 9.510648735 9.727730346 9.558992519 9.64788337 9.998142922 9.58127215 9.874253138 9.771062867 9.896429298 ieghzo114 hzo Nitrogen Anammox 7.409800139 7.214784004 7.344412273 7.103680658 146188547 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.205780978 7.074623946 7.582153942 91803943 ureC Nitrogen Ammonification Lactobacillus reuteri 100-23 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus reuteri; 8.136494644 8.166202604 7.507187003 7.538121863 7.488995156 7.459109069 7.5819475 7.607107674 7.275423253 7.57004053 91188522 sigma_32 Stress Sigma factors Vibrio alginolyticus 12G01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 8.513968882 8.241176331 8.32630017 7.444519086 7.707407116 8.130348164 8.661167285 7.592181285 8.443628964 7.460230182 7.921357329 7.919023441 187940066 TerD Metal Resistance Tellurium Pseudomonas aeruginosa superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.53232663 8.44839273 8.59389206 7.988661998 8.015040366 7.756514857 8.229853207 8.417302992 8.34283091 8.142203611 8.41230202 8.319008867 115524317 nagG Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.466331892 8.627727116 8.479718535 8.637582757 8.56651918 8.461582621 8.643215529 9.151833171 8.782622391 8.846005359 8.748758457 8.825420115 94471099 narG Nitrogen Denitrification uncultured bacterium 8.989913924 8.881399648 8.716214804 8.988573223 8.817587158 8.896784996 8.494079564 9.009686116 8.598436814 8.733378861 8.868374777 8.729364288 29833735 ppx Phosphorus Phosphorus utilization Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 9.062818862 9.116342847 9.123864045 8.533276011 8.477075402 8.406381111 8.510474447 8.590859939 8.490998061 8.582969527 8.367973244 8.533393863 117928666 exochitinase Carbon cycling Carbon degradation Chitin Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 9.461401474 9.504730161 9.606175016 9.405209815 8.732310421 9.044303093 8.543325058 8.290803821 158521900 pcc Carbon cycling Carbon fixation Desulfococcus oleovorans Hxd3 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus;species:Desulfococcus oleovorans; 8.364374709 8.387277443 8.283262607 8.064468454 7.996577461 8.115889476 8.370585875 8.522557769 8.223787992 8.196052394 162452285 cadBD Metal Resistance Cadmium Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 8.174930358 8.711554085 8.265733744 8.220996761 8.180571381 8.444286618 8.606691106 8.341093102 8.566657718 8.17071527 8.299105361 8.23284735 120325752 ureC Nitrogen Ammonification Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 9.734392794 9.483927907 9.895612837 9.300200465 9.683601452 9.539276034 9.79111646 8.634937594 9.771225395 9.163754876 9.385139253 9.567746553 83576882 fnr Stress Oxygen stress Rhodospirillum rubrum ATCC 11170 9.70479603 9.78979159 9.862734341 9.233906094 9.194121601 9.033800044 9.171799431 9.151821189 9.194001059 9.485080609 9.453941286 9.346458546 170654540 amyA Carbon cycling Carbon degradation Starch Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 9.592330297 9.604086342 9.78729169 9.302013361 9.19620913 9.448220574 9.920563804 10.15781783 9.636095841 9.383490024 18181972 dsrB Sulphur sulfite reductase Thermodesulfobium narugense superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermodesulfobiaceae;genus:Thermodesulfobium; 8.253412968 8.299720787 7.68488109 7.495207085 7.890991124 7.63011601 8.003106187 7.982955829 7.833314531 7.711005356 7.774203376 87281000 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.959522884 9.024644851 9.067182569 8.183566426 8.26744236 8.185048933 7.883052929 7.65938474 8.169365204 8.223426836 8.0332705 8.553921471 77378433 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.994247595 8.932489286 9.025155918 8.449740377 8.299869517 8.23766781 8.492162814 8.765547925 8.851377233 8.446874694 8.379899215 8.444791776 39937381 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.734272176 8.74462477 8.891926046 8.859441079 8.541578367 8.405544508 8.33057586 8.588864254 8.949689958 8.942881181 8.936011327 8.676375701 162282629 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 8.638972365 8.697932157 8.783879575 8.473021015 8.430979816 8.323851135 8.456751105 8.374927945 8.266260451 8.375254602 8.477018176 8.571761557 192285851 katE Stress Oxygen stress Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.629977524 8.942996016 8.598260426 8.444401269 8.472886593 8.997501589 9.139215094 9.075008636 9.005964931 9.281720297 9.245535769 9.277924666 145570645 SilA Metal Resistance Silver Pseudomonas stutzeri A1501 8.219223657 8.454777817 8.399654568 8.344023386 8.562160335 8.273041994 8.587178376 8.692044932 8.529400714 8.84180645 8.658282503 8.440780359 157912660 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 9.024446464 8.749740882 8.902739129 8.27195041 8.468408603 8.463964539 8.802337748 8.088230696 8.885990516 8.585670074 8.411097726 8.381018348 160360517 amyA Carbon cycling Carbon degradation Starch Petrotoga mobilis SJ95 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Petrotoga;species:Petrotoga mobilis; 8.390801251 8.237214925 8.42490413 7.831280784 7.695079086 7.549897238 7.637208228 7.291141406 7.680778017 7.61064177 7.365887567 7.91259277 209518926 phdCI Organic Remediation Aromatics Polycyclic aromatics Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.280787365 8.308994549 8.435531926 8.224465765 8.057725404 8.088191984 7.768989957 7.944836625 8.176361492 7.901348764 7.771360004 8.034749674 228878951 AceA Carbon cycling Carbon degradation others Nakamurella multipartita DSM 44233 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 9.875568055 9.981239956 9.906236339 9.300632466 8.801553394 8.929982448 9.128500562 8.953828479 9.315608945 9.110196193 9.345327791 9.59825972 50555488 ahpC Stress Oxygen stress Yarrowia lipolytica superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Dipodascaceae;genus:Yarrowia;species:Yarrowia lipolytica; 8.212810784 8.11307023 8.054153279 8.247579371 8.258590027 8.154120564 8.434089409 8.432540262 8.424126482 8.401770517 8.467510999 254486307 glnA Stress Nitrogen limitation Roseobacter sp. GAI101 8.521787993 8.699318507 8.628220038 9.034129325 8.866689385 8.79269186 9.251463561 9.146720964 8.686872397 9.16541992 8.918211467 8.934156417 148652469 SMR_antibiotics Antibiotic resistance transporter Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 8.851037669 8.855163178 9.062344705 8.32950564 8.062404348 8.303721307 7.991290626 7.900372893 8.09196003 7.972803005 8.089378568 8.434961354 194562586 ChrA Metal Resistance Chromium Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 8.608006336 8.670078106 8.924679592 8.562280701 8.51307671 8.193201352 8.657146093 9.018908692 8.557940785 8.902837271 8.689174151 8.859448938 118037934 ChrA Metal Resistance Chromium Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8.21432966 8.159700265 7.982856848 7.86677103 7.609617521 7.832709027 7.979117548 8.195325593 7.885596309 7.6407099 7.622506856 78067407 silC Metal Resistance Silver Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.042117966 8.044535293 7.286642802 7.877721405 7.674523724 7.585042484 7.590576253 7.684070256 7.815805162 7.970345735 116067484 sigma_70 Stress Sigma factors Synechococcus sp. RS9916 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.815582531 8.583248727 8.211353445 8.570038461 8.586848021 8.261384333 8.356751649 8.682404124 8.067139539 91693852 akbF Organic Remediation Aromatics BTEX and related aromatics Burkholderia xenovorans LB400 8.620310087 8.490847835 8.549708785 8.123549143 8.338695835 7.684597668 8.516657578 8.352229492 8.67889592 8.175820609 8.361878522 8.202223449 150036080 sox Sulphur Sulphur oxidation Beggiatoa alba superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Beggiatoa; 8.974807626 9.057589422 8.731101948 8.230146496 8.433541741 8.413277162 8.315105618 7.966440802 8.61955512 8.201334484 8.140103734 8.538811607 134096626 gyrB other category gyrB Saccharopolyspora erythraea NRRL 2338 8.359746016 8.91806808 8.020225104 8.3644571 8.269273436 8.649333446 8.518526489 8.118409424 8.447270869 8.49697832 8.41850165 151302326 AprA Sulphur adenylylsulfate reductase Desulfobacca acetoxidans 8.37075695 8.476700793 8.85250981 7.673174579 7.49063063 7.692555113 7.587604967 8.193525513 7.566753372 7.685129382 7.959876051 262190208 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 8.291085355 8.067318249 8.128445011 7.364473999 7.641261957 7.61808963 7.438193463 7.200565449 7.413608928 7.639475799 92118119 CODH Carbon cycling Carbon fixation Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 8.72030885 9.008364364 8.97053323 8.560028678 8.797259598 8.650772626 8.93248277 9.202775214 8.700383399 8.989464954 8.626609534 8.678709523 118470321 alkB Organic Remediation Other Hydrocarbons Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 9.330817354 8.743897936 8.748337136 9.272902998 9.244354251 9.244751331 8.663376279 9.367315052 8.754868402 9.174705577 9.355945451 8.837644517 164614299 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 8.385240059 8.378071654 8.200774527 7.968876579 8.104628931 8.322090428 8.367048006 8.146636676 8.592312141 7.630588212 8.001169888 7.82157622 262395573 SMR_antibiotics Antibiotic resistance transporter Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.388064969 8.595289028 8.444283726 7.665597706 7.692081513 7.938119522 8.356517921 7.702064862 8.516646884 7.684722407 7.438288149 7.743696887 113867379 atzB Organic Remediation Herbicides related compound Ralstonia eutropha H16 9.029922639 8.737256407 8.917618464 8.963754532 8.919721476 8.594374794 8.566778122 9.158519825 8.703731933 9.055095886 8.897414833 8.950209125 114317214 iuc virulence aerobactin Granulibacter bethesdensis CGDNIH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 8.781857102 8.335146228 8.587607272 7.975288781 8.031564046 7.885430212 7.702129116 7.774195587 8.190641105 7.991434471 7.463016862 7.974147714 119862855 pilin virulence pilin Psychromonas ingrahamii 37 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas;species:Psychromonas ingrahamii; 9.262575456 9.22490861 9.521882145 8.826190512 8.672193865 8.712346448 8.477822909 8.438738361 8.7205972 8.512944509 8.427742105 8.868677294 260086281 hrcA Stress Heat shock Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 8.979721794 8.8281579 8.811353048 8.314124412 8.556979653 8.228604951 8.049888938 8.150821185 8.228520413 8.25371445 8.385735688 8.6570755 194562754 ChrA Metal Resistance Chromium Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 8.711428102 8.691221326 8.479178826 8.074697516 8.086003808 8.042389611 8.44049514 8.172674495 8.478006684 8.097474458 8.226880427 8.1732292 68562084 CODH Carbon cycling Carbon fixation Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 8.170244351 8.171543788 8.256226453 7.661498963 8.000219332 7.951321914 7.722990647 7.876039027 8.097001739 7.705492251 7.772557931 7.669095098 151302153 APS_AprA Sulphur adenylylsulfate reductase Desulfovibrio sp. HRS-La4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 8.209186042 8.473077851 8.381887444 7.567768918 7.910503772 7.907604525 7.747115344 7.110999374 8.356768056 7.356860778 7.441229349 7.616276 150259920 tutFDG Organic Remediation Aromatics BTEX and related aromatics Victivallis vadensis ATCC BAA-548 superkingdom:Bacteria;phylum:Lentisphaerae;family:Victivallaceae;genus:Victivallis;species:Victivallis vadensis; 9.242960708 9.086887422 9.155112403 8.407610445 8.427526186 8.809310794 9.091766535 8.253093783 9.04686521 8.674550336 8.511218447 8.826847998 91683003 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.290278265 8.98783849 8.510624531 9.061390699 8.906607163 8.706467072 9.217104319 9.008027135 9.069831617 8.786130385 8.770831846 8.628833334 77995090 pcc Carbon cycling Carbon fixation Carboxydothermus hydrogenoformans Z-2901 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Carboxydothermus;species:Carboxydothermus hydrogenoformans; 8.801662185 8.840879528 8.852380014 8.183689245 8.180328559 8.273502292 7.852589489 7.689982512 8.203056786 7.998079986 7.890808976 8.293684679 261282526 sigma_24 Stress Sigma factors Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.666984731 8.282601983 8.174851749 8.071579673 8.177887125 8.260707312 7.441947126 8.417516321 8.482156892 8.450371144 9106794 linC Organic Remediation Pesticides related compound Xylella fastidiosa 9a5c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xylella;species:Xylella fastidiosa; 10.16258245 10.22932143 10.22649707 9.392931206 9.563622407 9.723525014 9.999555791 9.750048087 10.11024149 9.95899372 9.987012668 10.19705347 196229458 sigma_24 Stress Sigma factors Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 8.318482383 8.701428145 8.436086772 8.535200057 8.210191478 8.261218529 8.329894317 8.320820145 8.588800144 8.529007214 8.742950471 198262691 SMR_antibiotics Antibiotic resistance transporter gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.532528826 8.739714983 8.460374012 8.044563535 7.866206408 8.295933043 8.661966144 8.320045161 8.490411743 8.551971371 8.449759848 8.625539845 257219392 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 8.887023515 8.952729331 9.328285592 8.647767471 8.771558777 8.78729917 8.998370141 8.913942041 9.429343016 9.255114316 9.274955157 118571995 CopA Metal Resistance Copper Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 7.428734654 7.387653002 7.526117059 7.518607722 7.911904639 7.987824833 8.050141257 7.627368215 7.502310587 76056981 narG Nitrogen Denitrification uncultured bacterium 8.262071155 8.272336276 8.49199276 8.208729458 8.358216594 8.016229962 8.00403274 7.653723748 44662915 TerD Metal Resistance Tellurium symbiont bacterium of Paederus fuscipes 8.177229151 8.336944078 8.285147511 7.894605361 7.973859326 8.027070093 8.06270501 7.885265633 8.132702063 7.875731607 8.003670218 7.696171835 172039745 cydA Stress Oxygen limitation Corynebacterium urealyticum DSM 7109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium urealyticum; 8.55529824 7.994881749 8.483448434 8.300395406 7.887100817 8.128047058 8.156290106 7.88302076 8.159186708 7.874206833 183173366 gyrB other category gyrB Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 9.125064153 8.872627837 8.621665092 9.461299322 9.185667805 9.064554815 9.440882777 9.327826599 8.957471638 9.196083272 8.963145669 9.001046798 111150828 katE Stress Oxygen stress Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 8.130447845 7.947900901 7.479050622 7.639113619 8.065212599 7.879090831 7.929697081 7.871716718 190893785 Arylest Organic Remediation Aromatics Other aromatics Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.184639062 8.676494069 7.810757069 7.54401845 7.752017882 7.509931697 7.314451947 8.086275294 7.331760085 7.559505459 7.735902648 10567335 catB Organic Remediation Aromatics BTEX and related aromatics Agrobacterium rhizogenes superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 8.367048113 8.123987002 8.564035447 7.500282643 7.414683412 7.665601125 7.875920691 7.418598213 7.473140553 7.535130095 7.895320841 118671186 nmoA Organic Remediation Aromatics Nitoaromatics Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.98314146 8.185771346 9.003936878 8.924256554 8.806967986 8.631857177 8.821831548 8.443256835 8.769013234 8.550613425 8.143415687 85708633 hrcA Stress Heat shock Erythrobacter sp. NAP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 8.302932621 8.207471111 8.623026726 8.60850421 8.230664095 8.737438269 8.565701864 8.357538426 92109511 fnr Stress Oxygen stress Nitrobacter hamburgensis X14 9.113144853 8.589278181 9.196708372 8.435358929 8.297274655 8.295948202 8.363260996 8.012590915 8.362673828 8.243753574 8.011510349 8.355482505 229863468 grpE Stress Heat shock Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 9.161009253 9.093762839 9.007680335 9.322402088 9.18446305 8.954779738 9.093858188 9.150203975 9.043670095 9.106638095 9.372409376 8.666626757 27350938 pcpE Organic Remediation Herbicides related compound Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 9.222957413 9.202137556 9.009930694 8.451638722 8.60292316 8.486519807 8.320585124 8.428054285 8.492387656 8.539391184 8.781074217 8.678756034 226358096 Tet Antibiotic resistance other Deinococcus deserti VCD115 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 9.870035873 9.692844266 9.733609864 9.099401881 9.20172719 9.210136637 8.880810287 8.960831905 8.993126299 9.002541417 9.211277117 9.14457889 209874150 NirB Nitrogen Assimilatory N reduction Oligotropha carboxidovorans OM5 9.467577089 9.569821352 9.600344245 9.157103597 9.165152345 8.821324923 9.601100304 9.786209121 196243766 ArsC Metal Resistance Arsenic Cyanothece sp. PCC 8802 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.329649761 8.147955213 8.148885432 7.499904269 7.763515384 7.822870169 7.759814529 7.899463489 8.053586946 7.971858703 7.864562787 126436666 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.920119372 8.159995114 8.689187479 8.676869507 8.526740656 8.752135353 8.690439606 8.123960335 8.602448709 8.369638159 8.436036114 84689908 nasA Nitrogen Assimilatory N reduction Parvularcula bermudensis HTCC2503 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 8.467933955 8.601102462 8.665691487 8.203220241 7.945156753 8.067714816 7.809226175 8.254011645 8.344037354 8.26500809 8.151163275 116700521 dsrB Sulphur sulfite reductase Syntrophobacter fumaroxidans MPOB 9.17800519 8.797040409 9.271154605 8.463629059 8.523598994 8.707842081 8.772406255 8.646742884 8.616468916 8.645533667 8.559601216 8.746003857 56314213 pstS Stress Phosphate limitation Aromatoleum aromaticum EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 8.273278358 7.61112768 7.986534612 8.280939715 8.233994677 8.142006194 8.228733165 8.192096881 8.184931079 7.908274083 8.034104932 119376333 nmoA Organic Remediation Aromatics Nitoaromatics Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.434623227 8.736046599 8.991476389 8.372116397 8.456456002 8.24272897 8.260748601 8.201431689 8.486625748 7.92628084 8.466347145 8.180323304 49529682 vanA Carbon cycling Carbon degradation Others Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 8.51182001 8.574445228 8.427822036 8.116238346 8.372899441 8.375455829 8.28585867 8.628083648 8.559676722 8.778148964 8.684319097 219950066 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 9.479848255 9.803137357 9.43977002 9.914628691 9.885388586 9.832891749 9.654998505 10.14471701 9.160226224 9.921127772 9.95361368 9.543231458 6714769 hrcA Stress Heat shock Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 9.546677273 9.665010699 9.562007312 9.198316305 9.049290879 9.027979971 9.201022851 9.029139421 9.074875167 9.067583153 9.136794367 9.095807648 10129889 sigma_32 Stress Sigma factors Sinorhizobium meliloti superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium; 8.990428074 8.852340139 9.066763646 8.797367312 8.58166038 8.477540095 8.548693979 8.30038126 8.289755812 8.418213726 8.392847002 8.568384491 167040417 nplT Carbon cycling Carbon degradation Starch Thermoanaerobacter sp. X514 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Thermoanaerobacter; 9.214037484 8.976118146 8.995958458 8.374365198 8.156623998 8.459264852 7.982567636 7.830431278 7.928871959 8.198909772 8.503296957 108759259 phoB Stress Phosphate limitation Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 8.889665509 8.89669531 8.940935391 8.142380881 8.168242255 8.369159548 8.395821455 7.578958277 8.36053452 8.11355465 8.414240185 8.346035103 157912157 nhh Organic Remediation Aromatics Nitoaromatics Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 8.755810244 8.692123628 8.653658677 8.678394994 8.59882717 8.478660548 8.549572155 8.815286145 8.691107366 8.873193068 8.567849165 8.735001022 118470455 trzE Organic Remediation Herbicides related compound Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.836622728 8.83951967 8.864612335 9.122055816 9.190104864 9.204242778 9.03920974 9.084568639 8.759484198 9.17260445 9.251031137 8.422747843 117927612 pcc Carbon cycling Carbon fixation Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 9.639848647 9.307645681 8.829584119 9.67711975 9.051195905 9.357973894 9.739351155 9.508942843 9.134346617 9.115228678 9.099993726 9.036761969 110817069 xylJ Organic Remediation Aromatics BTEX and related aromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 9.903701024 10.06154054 9.856117729 9.281980698 9.378259993 9.790673372 10.13795902 9.891818437 10.26220956 9.445868946 9.542360115 9.641021491 98977496 AceB Carbon cycling Carbon degradation others Sphingopyxis alaskensis RB2256 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 8.89761465 9.017246911 8.877847803 8.279419491 8.611942867 8.823810339 8.22385778 8.84131958 8.234997476 8.73384522 8.888314787 8.874222476 269794708 nplT Carbon cycling Carbon degradation Starch Sanguibacter keddieii DSM 10542 9.555275694 9.584308399 9.532234298 9.159103395 9.273138578 9.35820659 9.758615584 8.50821492 9.66591788 8.853453863 8.716753293 8.837082567 227197130 phoA Stress Phosphate limitation Corynebacterium striatum ATCC 6940 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium striatum; 8.878637383 7.94639486 8.05828347 8.919598901 8.938800496 8.79291888 8.578306226 8.803446759 8.469264642 8.592880275 8.548420124 8.182318436 76577478 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.741892376 7.716209423 7.474782293 7.334349425 7.345629372 7.549096723 7.479402626 7.38903015 73542293 SMR_antibiotics Antibiotic resistance transporter Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.329383056 8.504400647 8.299690008 8.077909936 8.15619041 8.314571043 8.547033471 8.542335442 8.428472662 8.474396382 8.421343398 7.734962981 91790421 narI Stress Oxygen limitation Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 8.656613046 8.695617314 8.906859768 8.39564381 8.225260802 7.906810467 8.258711179 8.715321746 8.092419553 8.485786736 8.40242716 8.605338343 15897887 related_thiosulfate_gene Bioleaching Sulphur Sulfolobus solfataricus P2 9.370893725 9.374989288 9.639083298 8.866177914 8.681674237 8.667753621 8.474837019 7.99524263 8.676739622 8.565932902 8.485601012 8.806372044 84713596 CopA Metal Resistance Copper Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8.42810205 8.517711446 8.33761823 7.727356312 7.920309062 8.226196179 8.144237954 7.828563253 8.099814097 7.940990319 8.296643323 7.87356166 219859051 pcc Carbon cycling Carbon fixation Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 8.743180007 9.100866463 8.611124478 7.70981894 8.013679094 8.211380955 8.508949543 7.774883944 7.882391581 8.163630167 8.004610227 189423927 cytochrome Energy process Energy process Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 7.092995683 6.841369341 7.444041675 7.344769668 6.708968416 7.919645311 7.083637207 7.097146839 7.489208814 163735110 ChrA Metal Resistance Chromium Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 8.038862214 8.011984851 7.133074462 7.088729521 7.136725805 6.985591223 6.893369414 6.95599422 158187229 pcaG Organic Remediation Aromatics Other aromatics Burkholderia sp. NCIMB 10467 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 9.147657155 8.952475785 9.272678809 8.936147971 9.03178521 9.114374207 9.171574154 9.113845753 9.192234582 9.105045592 9.515286723 9.1708503 145620278 hydrogenase Energy process Energy process Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 8.31416796 8.715479513 8.691384833 8.543160489 8.370116208 8.234230657 8.250514964 8.052756195 8.266130839 8.298254922 8.169898019 8.26114029 255942056 endochitinase Carbon cycling Carbon degradation Chitin Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 8.084613356 8.288368947 8.448902531 8.379786433 8.15479553 8.112285835 8.078947382 8.237029969 7.806424431 8.076786127 7.737446518 227502452 katA Stress Oxygen stress Corynebacterium accolens ATCC 49725 8.382822637 8.658852777 8.400122294 8.441012943 8.527288014 8.800093095 8.401197174 8.48058917 8.195334487 8.18605817 7.937215508 20086261 dsrB Sulphur sulfite reductase uncultured delta proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 7.752637136 8.354436228 8.269915374 8.093191387 8.066702457 8.427001431 8.034429048 8.34204085 7.901466274 254489137 MFS_antibiotic Antibiotic resistance transporter Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.242083526 8.207316093 7.709548443 7.83623201 8.236088098 8.530991358 8.234362479 8.028079785 8.473337409 7.929499271 2414562 ppk Phosphorus Phosphorus utilization Mycobacterium leprae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.723724885 8.604080181 8.384443683 8.199745275 7.992362567 7.92052898 7.860122941 7.989649431 8.039674705 7.952042245 8.220271147 148537347 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured soil bacterium 8.521693656 8.716847291 8.755948356 8.577030223 8.717729145 8.62672622 8.16336118 8.786989643 8.426630072 8.839454383 8.597671152 8.932885957 239979308 ureC Nitrogen Ammonification Streptomyces albus J1074 9.541672994 9.426123015 9.300403247 9.449395171 9.643147433 9.748798573 9.480671663 9.550640971 9.576475916 9.412089605 9.807391205 9.482679707 227981326 glnA Stress Nitrogen limitation Tsukamurella paurometabola DSM 20162 8.567708247 8.507837053 8.880099909 8.538929619 8.598741274 8.627117698 8.916541401 9.17068657 8.536330237 9.119551265 8.985177291 8.784936593 15159901 nmoA Organic Remediation Aromatics Nitoaromatics Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.049702561 7.982240959 7.791243922 7.878619621 8.356068117 8.259670004 8.130496525 8.047391627 7.945798342 117999662 pbrA Metal Resistance Lead Comamonas testosteroni KF-1 9.029688541 8.809813624 8.977611718 8.733408603 8.500206556 8.608123038 8.693764176 8.732323528 8.800765269 8.662938435 8.59887362 8.608708603 150858265 ara_fungi Carbon cycling Carbon degradation Hemicellulose Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 9.282128912 8.938683342 8.78867002 7.74064004 8.60705418 8.308930052 8.476604801 8.452235851 8.4551035 8.381091237 8.450397628 8.810888225 256686479 amyA Carbon cycling Carbon degradation Starch Jonesia denitrificans DSM 20603 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 9.315920802 9.237523915 9.057473724 8.606981585 8.609270887 8.717741601 8.702567418 8.508678835 8.488211725 8.751449037 8.874294244 8.915989709 206676713 nagG Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.370116874 8.211461647 7.774906138 7.822864125 7.934597093 7.929450088 7.277142934 7.717132046 7.662156855 7.982309942 109714835 AmiE Organic Remediation Aromatics Other aromatics Helicobacter acinonychis str. Sheeba superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter acinonychis; 8.576407944 8.735753414 8.403432981 8.196934071 8.120055706 7.762015202 8.239717927 8.760076287 8.433681011 8.068720444 8.511383842 56698487 catB Organic Remediation Aromatics BTEX and related aromatics Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 9.044651038 9.361441744 8.956532531 8.813908932 8.918986384 8.730465293 8.654032136 9.318638695 8.677717108 9.263386382 9.172512854 9.146050628 156869355 clpC Stress Protein stress Clostridium leptum DSM 753 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 9.692028437 9.559393478 9.492166396 8.743328649 8.668659409 8.814303271 9.146972122 8.434237568 8.932529044 8.576734041 8.546999887 8.921360267 32307983 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.643930108 8.995623879 8.805984524 8.730045508 8.662732235 8.499333518 8.661658247 8.980070738 8.738200726 8.709679007 8.721678898 8.798246106 88783397 CopA Metal Resistance Copper Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 9.451822551 9.189247756 9.598865834 9.000807743 8.873499177 8.753311789 8.615107234 8.58572162 8.780033597 8.837769706 8.770491615 9.102475654 84043019 Catechol Organic Remediation Aromatics Other aromatics uncultured bacterium 10.05912199 10.02876803 9.980142038 9.277806874 9.383616131 9.425625957 9.36469068 9.220522892 9.335423939 9.397339347 9.608432663 9.604441088 220962100 phenol_oxidase Carbon cycling Carbon degradation Lignin Cerrena unicolor superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Cerrena; 7.831720136 7.891463455 8.587210761 7.596092215 7.781667725 7.958765702 8.053577118 7.712409326 187929594 narH Stress Oxygen limitation Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.732771309 8.271071043 8.612992678 8.188337448 8.245676148 8.268100435 7.820291699 8.245790218 8.244358492 8.104119865 8.016233201 8.274711729 124009234 fnr Stress Oxygen stress Microscilla marina ATCC 23134 7.522536969 6.834020402 152965502 gyrB other category gyrB Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 9.687072948 9.537755355 9.640098291 9.135092434 9.219730288 9.183171571 9.67445213 9.340736728 9.654687144 9.188822606 9.211105915 9.336558482 5042259 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.785957068 9.050380555 8.9075356 8.710599159 8.837634942 8.637150416 9.091953937 9.344194419 9.149717594 9.104179482 8.702491343 8.780850594 218460943 pulA Carbon cycling Carbon degradation Starch Rhizobium etli Kim 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 9.02232859 9.095389994 9.233766259 8.646855289 8.378650669 8.502034888 8.507418653 8.583469517 8.722980175 8.640017133 8.761709757 218887150 SMR_antibiotics Antibiotic resistance transporter Desulfovibrio vulgaris str. 'Miyazaki F' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 8.896059063 9.019400088 9.05842485 8.985926475 9.023268911 8.870262848 8.794572229 9.135577078 9.126222132 9.067361862 8.978339145 8.792955489 121607007 gyrB other category gyrB Verminephrobacter eiseniae EF01-2 10.03987229 9.918435947 9.984414547 9.506592472 9.629205948 9.292274041 9.458539521 9.709411979 9.348287333 9.81316284 9.783539299 9.698689353 152980621 pstC Stress Phosphate limitation Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 8.222875862 8.291422174 7.629471124 7.869391465 7.88731037 7.627542878 7.942803937 8.217022438 7.818990361 8.021317575 7.899966612 114539350 gyrB other category gyrB Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 9.181737269 9.302784934 9.116329806 9.360654031 9.208369645 9.218932948 9.46898792 9.263109094 9.306566839 9.289707872 9.551929658 9.250144867 77965124 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.642475336 8.759099819 8.885023057 8.16227497 8.060860368 7.988383008 8.315970708 7.848868681 8.177864105 8.289161183 8.205991311 8.171770827 94471283 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.686804645 8.734982036 8.731727867 8.709363352 8.911067626 8.781759177 8.459035563 9.079993564 8.252137515 8.805684627 9.060592138 8.392270295 84501255 gyrB other category gyrB Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 9.078061346 9.060615435 9.052989316 8.721695105 8.875403788 8.674843295 8.849663334 9.180484252 8.873411939 9.305695601 9.05287531 8.961845407 126348134 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces ambofaciens ATCC 23877 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ambofaciens; 9.029950989 9.108675738 9.110699733 8.570679938 8.639206055 8.475826109 8.273737335 8.388605836 8.818978706 8.365198123 8.294665983 8.659188908 196221517 sigma_70 Stress Sigma factors Chthoniobacter flavus Ellin428 8.236161194 8.10538396 8.232895803 7.997917382 8.192973731 8.330157026 8.482229001 8.357821398 8.402211249 8.365089002 8.489037124 8.344571711 167779124 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira biflexa; 8.310572885 7.984737919 8.365835656 7.73878415 7.584781479 7.749399653 7.329942363 6.964302616 7.908914125 7.636710893 7.527328314 7.795679982 88917246 nifH Nitrogen Nitrogen fixation Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 8.677841787 8.344906349 8.793058912 8.410646422 8.356128244 7.90284412 8.265552357 8.851877778 8.813886616 8.449405086 8.668692323 221633801 pstB Stress Phosphate limitation Thermomicrobium roseum DSM 5159 9.099089369 9.08545308 8.465690562 8.243344439 8.430092411 8.088777898 158314330 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 9.13445236 9.19854786 8.673476083 8.846718395 8.625955172 8.815036478 8.997503788 8.365566905 8.804227162 8.309561314 8.322237156 8.323066787 169817874 fnr Stress Oxygen stress Burkholderia cenocepacia MC0-3 7.80847837 7.656953647 7.994061602 7.67203177 7.356069659 7.915854697 56410462 fcbA Organic Remediation Aromatics Chlorinated aromatics Geobacillus kaustophilus HTA426 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus kaustophilus; 8.338373885 8.399571085 7.624151764 7.66800522 7.63850897 7.53118695 7.577584191 7.653377382 7.470048328 7.73014432 13274146 B_lactamase_B Antibiotic resistance Beta-lactamases Janthinobacterium lividum 9.310946021 9.255436521 8.139117633 8.248800988 8.093634408 7.841791488 8.278172112 7.583311934 8.245259039 8.198250283 8.797010546 118579507 pstB Stress Phosphate limitation Pelobacter propionicus DSM 2379 9.149504835 9.218596067 9.725360926 9.833854093 9.761101966 9.293818437 9.184794344 9.861037033 9.37942059 9.686753791 9.196051712 9.696371662 157150976 hrcA Stress Heat shock Streptococcus gordonii str. Challis substr. CH1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus gordonii; 8.20707811 8.229641227 7.759007415 7.685619842 7.752605238 7.912794233 7.522684813 7.818587956 7.973205303 7.808205145 115353402 ureC Nitrogen Ammonification Helicobacter felis superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter; 7.984710322 8.023005932 7.235939781 7.124036124 94986137 pilin virulence pilin Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 9.079463645 8.837589474 8.687033462 220723435 glx Carbon cycling Carbon degradation Lignin Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 8.85405826 9.218150351 8.608417308 8.541366396 8.455600126 8.322093958 8.295873922 8.336691136 8.28659588 8.401618488 8.429864322 8.34278102 110823962 TerD Metal Resistance Tellurium Rhodococcus jostii RHA1 8.52049823 8.242573321 8.461194477 8.06459693 7.970220297 7.949703408 8.060148057 8.221453332 8.216485441 8.236411009 8.136675157 196183636 pstS Stress Phosphate limitation Microcoleus chthonoplastes PCC 7420 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus chthonoplastes; 9.167565482 9.138356467 9.321779649 8.801783732 8.788649063 8.66227027 8.717829294 9.12250695 8.787962645 9.221140183 9.054556598 9.162399346 254831082 pstB Stress Phosphate limitation Listeria monocytogenes 10403S 8.618392457 8.203402987 8.748330586 8.017165727 7.870154216 7.788906147 7.84109302 7.493183945 7.966344889 7.874239269 7.479238462 7.936176939 217413012 xylA Carbon cycling Carbon degradation Hemicellulose Bifidobacterium gallicum DSM 20093 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 9.287687331 8.816064393 8.792601794 9.244421649 8.520528836 8.416264486 9.308264606 8.702282014 226941000 napA Nitrogen Dissimilatory N reduction Laribacter hongkongensis HLHK9 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Laribacter;species:Laribacter hongkongensis; 9.358715957 9.674360026 9.299909326 8.939478555 9.114855655 9.122927723 9.364926695 9.247716633 9.378300392 9.382871715 9.476606374 9.418579883 121997892 sigma_70 Stress Sigma factors Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 9.255544197 8.956607589 8.91451834 8.970091901 9.109149692 9.147520836 9.022799979 9.602546347 9.071341593 9.252256304 9.527304032 9.390032349 126720572 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.689586217 8.56387422 8.474626894 8.325193305 8.727369729 8.538136943 8.866811271 8.680654504 8.407791729 8.332151836 8.57520053 7.964662427 78518065 CopA Metal Resistance Copper Bradyrhizobium sp. BTAi1 8.115891787 8.203181035 8.244625546 8.149819264 8.269293828 7.936432416 8.439375145 8.173801135 8.185411476 8.361674433 8.581860149 8.220440163 45386181 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 8.824903307 8.682794698 8.640385931 8.719179277 8.456172184 8.886083494 8.355922131 9.111044262 8.139659046 8.409217912 8.282744275 11344611 cytochrome Energy process Energy process Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.56311873 8.190597263 8.263779992 8.425102413 8.437912082 8.229199809 8.135537924 8.319060072 8.378980355 8.106515649 8.414950316 8.238893121 117576547 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Gramella forsetii KT0803 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Gramella;species:Gramella forsetii; 8.689393485 8.134355012 8.53688205 8.084784106 7.686767651 7.73034952 7.842097515 7.600601876 7.934556971 7.648362227 7.523013652 7.818692914 157913491 fnr Stress Oxygen stress Dinoroseobacter shibae DFL 12 8.875414379 8.902153899 8.855408045 8.243511994 8.093376924 8.338101489 8.124287173 7.93531616 8.29280369 8.316468973 8.201079495 8.475576311 119469265 cda Carbon cycling Carbon degradation Starch Alteromonadales bacterium TW-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales; 9.244072027 9.719327203 9.679909237 9.819034877 10.0933237 9.897183096 9.967719799 10.32695288 9.977995299 10.15183626 10.03702353 10.08991092 126710763 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 8.95797436 9.268738355 8.713103444 8.178978535 8.379062979 8.654953858 9.039435824 8.458052728 8.937507853 8.437964164 8.583517106 8.616186058 167355802 glnA Stress Nitrogen limitation Shewanella halifaxensis HAW-EB4 8.479159127 8.491485829 8.325161306 7.844227255 7.822189685 7.62666851 7.595681481 7.637674036 8.019171396 84326723 ZntA Metal Resistance Zinc Pseudomonas aeruginosa 2192 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.82141468 8.591708174 8.199257282 8.728444138 8.591479899 8.652249046 7.769942921 8.081971345 8.584928042 8.369863317 157403261 nbaC Organic Remediation Aromatics Nitoaromatics Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 8.795105993 9.270241345 9.231285237 8.326208186 8.718945244 9.060943597 9.453678098 8.763465035 9.309391841 8.909471767 9.149680608 9.209407922 118175273 ureC Nitrogen Ammonification Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 7.519409842 7.480187055 7.657841971 7.63494574 7.681123763 8.1745358 8.094241048 7.925676873 148830119 tfdA Organic Remediation Aromatics Chlorinated aromatics Erythrobacter sp. SD-21 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 9.716432141 9.482953516 9.698518306 8.863176815 8.853177717 8.748449568 9.072373462 8.512161944 8.810796545 8.848337519 9.105638869 149808122 iuc virulence aerobactin Moritella sp. PE36 8.62169788 8.749644501 8.880673604 8.275923775 7.643100324 8.15460735 7.779643565 7.745794049 7.983058823 254045350 narI Stress Oxygen limitation Lactobacillus plantarum JDM1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus plantarum; 8.867425115 8.956820927 9.096708423 8.452109354 7.816443235 8.251640618 8.257124159 8.12585796 8.257589618 8.204273549 8.497159534 74422179 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Nitrobacter winogradskyi Nb-255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 9.137110698 9.049297721 9.229409279 9.234025647 9.237466029 9.114900155 9.378978906 9.550761521 9.385062631 9.502927042 9.633223501 9.256180489 189341336 ahpC Stress Oxygen stress Chlorobium limicola DSM 245 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium limicola; 8.79024158 8.811370551 8.904843573 8.430265231 8.259979697 8.235005858 8.128185655 7.828169613 8.103919813 8.014566086 7.747457912 8.373228117 123443584 hly virulence hemolysin Yersinia enterocolitica subsp. enterocolitica 8081 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 8.750165762 8.783058842 8.746902308 7.916494635 7.988561056 7.919612122 7.903829283 7.670347188 8.318139299 7.745203615 7.670930127 8.078899072 89352801 Apc Organic Remediation Aromatics BTEX and related aromatics Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 9.56239147 9.484436571 9.486299231 8.94812064 8.749097186 8.656546375 8.993734863 8.574658419 9.047513633 8.642865205 8.595410046 8.965277305 21221184 ZntA Metal Resistance Zinc Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.663130105 8.27780643 7.831989557 7.955882506 7.966003771 8.10754426 7.356041439 7.50046289 7.701044255 7.956200303 41350153 ureC Nitrogen Ammonification Saccharopolyspora spinosa superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora; 8.655946622 9.063507132 8.699914583 9.019690398 9.264834951 8.688651063 9.043725 9.650877265 8.627519964 9.282186119 9.237535656 9.270635991 14389201 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.697958172 7.486033406 7.492817977 7.055756166 7.158214663 7.198310521 7.681968227 124258441 exaA Organic Remediation Chlorinated solvents Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 8.420581931 8.55062552 8.175926414 8.645565343 8.730385364 8.574627949 8.55938708 8.131359067 8.260795477 8.307213996 161165886 tfdB Organic Remediation Aromatics Chlorinated aromatics Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 8.86885369 8.998747031 9.033613181 8.504784232 8.45541762 8.262859887 8.206173035 8.523509601 8.489670492 8.705234632 8.475525223 8.342993738 145219258 sigma_32 Stress Sigma factors Prosthecochloris vibrioformis DSM 265 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeovibrioides; 8.533570174 8.222345514 7.91222118 7.812971033 7.769262626 7.58924957 7.516681824 7.672748659 7.50270641 7.601779734 7.898020005 55818863 exoglucanase Carbon cycling Carbon degradation Cellulose Clostridium thermocellum superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 8.448799829 8.836293603 8.793406571 8.984530544 8.849250734 9.072516511 9.417191012 9.432372448 9.320005144 9.064497411 258535576 pstB Stress Phosphate limitation Pantoea sp. At-9b 7.928551609 7.852547321 7.941740067 7.398552026 7.849038684 8.157992453 7.850109749 8.05007564 7.576584072 125601752 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.533865282 8.379670001 8.408586699 7.728915702 7.868906333 7.781405943 7.586202441 7.640514399 7.924805162 7.656289954 7.642552619 7.894868738 67921918 CopA Metal Resistance Copper Crocosphaera watsonii WH 8501 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Crocosphaera;species:Crocosphaera watsonii; 8.89356942 9.237073404 8.909081013 8.36605407 8.262009367 8.268061149 8.248132773 8.051923987 8.294909678 8.232552804 8.193452475 8.689804611 209517887 CopA Metal Resistance Copper Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.369997976 8.305489654 8.9470779 8.449411924 8.48644983 8.123178293 8.047141454 8.168114049 8.220513717 8.071177577 8.202038615 238789064 pap virulence adhesin Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 9.239891522 9.056884654 9.445922282 8.763062323 8.869488258 8.240546112 8.810572969 8.516883811 8.682105575 8.651600919 8.93100258 269978046 nplT Carbon cycling Carbon degradation Starch Mobiluncus mulieris 28-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus mulieris; 9.548500291 9.504727648 9.590293436 8.78147331 8.68222176 8.829219753 8.600748666 8.309902271 8.575569909 8.629399071 8.716600173 8.950535657 3059209 nahA Organic Remediation Aromatics Polycyclic aromatics Rhodococcus erythropolis 9.040346043 8.476486195 8.473622186 8.556737584 8.730228811 8.342620718 8.02616012 8.240327298 8.243266819 110550162 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.393896352 8.204965399 7.163550864 7.377913085 7.681514821 6.924752422 7.147552881 6.905676001 91199715 MFS_antibiotic Antibiotic resistance transporter Streptomyces ambofaciens ATCC 23877 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ambofaciens; 8.679615314 8.561750427 8.573975323 8.436443728 8.273798838 8.164249088 8.055808369 8.177069165 8.348912629 8.348949651 8.391497921 8.258699491 15922425 bphD Organic Remediation Aromatics Polycyclic aromatics Sulfolobus tokodaii str. 7 8.649437754 8.313892683 8.246666194 8.279808546 8.169036195 8.484639861 8.486776604 8.132032891 8.17085341 7.822634092 8.167626055 76363147 Catechol Organic Remediation Aromatics Other aromatics Burkholderia sp. 3CB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.30089142 7.883186133 7.717214575 8.148811705 8.012799373 8.00966791 8.031489913 7.895601765 7.65147082 160366221 alkH Organic Remediation Other Hydrocarbons Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.002321945 8.214508643 8.092689994 7.785801793 8.100813636 7.863324716 7.837243493 8.257469256 42524234 nrfA Nitrogen Dissimilatory N reduction Bdellovibrio bacteriovorus HD100 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 8.476690071 8.610883168 8.577220152 8.875342704 8.438683526 8.164522524 8.629819462 8.657305737 8.725170936 8.383204986 8.056604433 8.170211968 147886244 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 8.571880683 8.441842804 8.645391132 7.99894011 8.382379487 8.240459103 8.257803276 8.644891265 8.196129578 8.296197322 8.065324131 8.348944922 152027186 type_III_secretion virulence secretion Anaeromyxobacter sp. Fw109-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 8.492609104 8.468661798 8.389948893 8.438578436 8.24488164 8.004363529 8.170449999 8.335161106 8.264066826 8.406671819 7.924771603 8.255454288 29606702 katE Stress Oxygen stress Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 8.482761308 8.437776558 8.249068507 8.641719711 8.369009052 8.400985999 8.137020921 8.672429219 8.105029919 8.387424541 8.761372901 8.395278206 124265196 gyrB other category gyrB Methylibium petroleiphilum PM1 8.282865456 8.227016555 8.268499754 7.930922736 7.721938645 7.883740574 8.16779372 8.122297596 8.173064464 7.907533322 8.041780486 156191723 ureC Nitrogen Ammonification Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 9.838800936 9.655547159 9.478500231 9.660514985 9.809724893 9.833651602 9.841492919 10.16886819 10.054291 10.09033585 10.17200054 10.08323717 227502312 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium accolens; 8.709638536 8.562783833 8.59211028 8.415879474 8.241749617 8.092777172 8.183150187 8.122072622 8.411752883 8.433097987 8.16937352 8.183315433 221084238 nhh Organic Remediation Aromatics Nitoaromatics Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 9.574024008 9.569046381 9.478692636 9.239779803 9.187622978 8.883850159 9.08266473 8.916876464 9.315319111 9.113704929 9.265168286 9.144885549 145215274 sigma_24 Stress Sigma factors Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.473455058 8.639442823 8.45981068 8.64251766 8.412859269 8.164917732 8.564383589 8.66303247 8.272921671 8.648271312 8.532130958 8.284138377 209963854 amyA Carbon cycling Carbon degradation Starch Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 8.503690201 8.523092685 8.812968435 8.254831142 8.242009517 7.761484993 8.163103852 8.265062576 8.245728075 8.201219906 8.076137027 104784142 CadA Metal Resistance Cadmium Pseudomonas entomophila L48 7.733298014 7.372028663 7.534148113 7.01366264 6.999812421 7.657704859 7.209400402 7.273777224 86570482 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.15608665 9.271653104 9.091459009 9.029721154 8.957325402 9.107930292 9.369967158 9.269937793 9.401439463 9.237456645 9.503963921 9.525942186 5020007 dnaK Stress Heat shock Rhodothermus marinus 10.02942776 9.754134148 9.532581027 9.380275788 9.30803506 9.028681516 9.088546197 9.423680865 9.304434103 9.467813836 9.380762027 229746281 narI Stress Oxygen limitation Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 9.814284215 9.669027037 9.575413264 9.160305983 9.966253025 9.965930621 10.38443389 8.985015225 10.3584899 9.536720991 9.709114379 9.700770806 146403759 dehH109 Organic Remediation Chlorinated solvents Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 8.849169957 8.135068134 8.291453167 8.726707602 8.264284944 7.799260444 8.333520952 8.274130253 8.754970029 7.90703626 7.918676605 7.733516717 187918827 MFS_antibiotic Antibiotic resistance transporter Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8.757438388 8.681522827 8.541441682 8.757414211 8.81757512 8.59639421 8.431192835 9.068001691 8.631920391 9.104725193 8.862842244 8.807903696 271961914 sigma_24 Stress Sigma factors Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 9.011695389 8.879268581 9.479943948 9.476738005 9.241834016 8.829888946 9.131123756 9.531962411 9.201108396 9.48688941 9.367342077 9.661366221 146305080 type_III_secretion virulence secretion Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 8.666121107 8.733497356 8.781257188 8.437034936 8.488180173 8.394741803 8.650680894 9.163845258 8.609680602 9.003431264 9.131854205 9.072194794 154366341 pheA Organic Remediation Aromatics Other aromatics Acinetobacter calcoaceticus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 9.479821121 9.007061167 8.847542127 9.071006193 9.063870855 8.605317319 9.018037977 8.679843784 9.250587951 9.063762507 9.060037866 74038454 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.992972775 8.880035062 8.530821577 8.657431393 8.419152527 8.303926398 8.215240169 8.364543916 8.399689547 8.455077925 8.321866597 8.426397638 212171500 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 9.019150485 8.773786598 8.865119258 8.01049253 8.203584756 8.244017983 8.127100416 8.577483577 8.407461906 8.057866343 8.638822311 149185143 pimF Organic Remediation Aromatics Aromatic carboxylic acid Erythrobacter sp. SD-21 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 8.882956998 8.315459423 8.840847634 8.76752594 8.940426697 8.529779272 8.947593374 8.482167458 8.849836503 9.003225314 8.611153676 89518446 obgE Stress Radiation stress Flavobacteria bacterium BBFL7 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria; 8.500186835 8.660294337 8.170271039 8.348411702 8.382869933 8.388023586 8.189637056 8.187821752 8.399616612 8.112187276 8.351705645 8.33456212 209485857 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.467344906 8.207260815 7.52412947 8.132955692 8.216403614 8.236461227 7.216440254 8.576459577 7.784638113 7.935136221 8.18679611 56696824 pstB Stress Phosphate limitation Ruegeria pomeroyi DSS-3 8.311572269 8.405851804 8.486708037 8.525436 8.505555938 7.789794638 8.45426392 8.160449044 8.188701101 8.513419957 8.252606245 196170813 TerC Metal Resistance Tellurium Anaeromyxobacter sp. K superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 9.22080324 9.514335803 9.167497512 8.125319149 8.710936109 9.075175245 9.353973668 9.032368134 9.793841437 8.552932894 8.842450807 8.634581775 166711395 silC Metal Resistance Silver Xanthomonas oryzae pv. oryzicola BLS256 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 9.347930502 9.278199324 9.289419261 9.212882262 8.931203467 8.830690156 9.495858502 9.05157559 9.554705847 8.873112947 8.978291435 8.931826979 94471349 narG Nitrogen Denitrification uncultured bacterium 8.591550385 8.550795412 8.635238285 7.891299912 7.673080973 7.766770795 7.640028047 7.494907702 7.944564837 7.429623071 7.532303913 7.79376094 149937763 cda Carbon cycling Carbon degradation Starch Parabacteroides distasonis ATCC 8503 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides distasonis; 8.590968745 8.370823898 8.751742276 8.182933112 7.99298802 7.515789627 7.70090113 7.600997015 7.59481312 8.04725103 88062454 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 9.099878865 8.929755837 9.295498476 8.499448905 8.417276373 8.348477396 8.283550166 8.371000568 8.377252021 8.620956573 8.610924811 8.792673446 255334368 ahpC Stress Oxygen stress Hyphomicrobium denitrificans ATCC 51888 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 8.809773912 8.859356497 8.610222912 8.432451737 8.33910619 8.768125432 8.950864148 8.551989633 9.004976025 8.445516281 8.291039974 8.450493981 78221781 Catechol Organic Remediation Aromatics Other aromatics Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 9.0898115 8.841101909 8.610606181 9.104401678 8.987522722 8.887021154 8.670722612 8.914339792 8.728341638 9.004015753 9.046220742 8.725127952 17134720 ZntA Metal Resistance Zinc Nostoc sp. PCC 7120 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc; 9.424876305 9.351543621 9.368596106 8.16257402 9.008519876 8.925025398 9.668800656 8.968833883 9.768166841 8.618112853 8.817908914 8.928918098 112379439 pcaG Organic Remediation Aromatics Other aromatics Sphingomonas wittichii RW1 8.411786104 8.687968562 8.515338269 7.857635016 7.869001379 8.436992233 8.807536404 7.903385342 8.850913562 8.132098323 8.202854552 167360769 pcpE Organic Remediation Herbicides related compound Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 9.045908225 8.96030606 8.776437383 8.671415591 8.616666501 8.905094887 9.213363187 9.027113256 8.981819268 8.853545784 9.132358342 8.976574531 108803150 clpC Stress Protein stress Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 8.329516417 8.287476691 8.260021008 8.014514688 7.88883363 7.877691602 7.814528102 8.121907731 8.072935841 8.440583915 8.073077191 8.043952846 258405000 narI Stress Oxygen limitation Desulfohalobium retbaense DSM 5692 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium;species:Desulfohalobium retbaense; 8.898860647 9.170644117 8.794560323 8.47105386 8.610305869 8.833180252 9.132855397 8.871287138 9.245801617 8.983298703 9.068290912 9.275286232 114761465 alkK Organic Remediation Others Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 9.292706165 9.180984675 8.950624514 9.167061911 9.344409306 9.238858691 9.066710721 9.293930736 9.302442256 9.790175324 9.679362269 9.486388325 161661113 phytase Phosphorus Phosphorus utilization Yersinia kristensenii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia; 8.885784543 8.594845247 9.118068301 8.178511515 7.835313883 8.397167876 8.000110862 8.023814407 8.135336152 7.844634617 8.292747299 86608620 sigma_70 Stress Sigma factors Synechococcus sp. JA-2-3B'a(2-13) superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.166461688 8.22644395 7.604574256 7.426602302 7.54612927 7.380017114 7.095726533 7.891726272 7.644274901 7.346195117 7.595823811 54015305 nmoA Organic Remediation Aromatics Nitoaromatics Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 10.34689092 10.3064669 10.32238812 9.569547429 9.431636787 9.384109123 9.746916817 9.380858375 9.797802108 9.677517364 9.985998898 9.740967197 197103250 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 8.395101389 8.495947352 8.063348378 8.167034884 8.703731013 9.009599079 8.314317222 8.775952603 8.416399769 8.420148118 8.893380928 8.29266701 55229879 SMR_antibiotics Antibiotic resistance transporter Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 8.488449231 8.193104281 8.604478823 7.798630655 7.640286354 8.072748529 8.342730395 7.788593035 8.343877375 7.421387871 7.778519148 7.532751725 255259820 sigma_24 Stress Sigma factors Sideroxydans lithotrophicus ES-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Sideroxydans;species:Sideroxydans lithotrophicus; 8.852851136 8.628389831 8.456335236 8.481863247 8.355607072 8.454797911 8.506922943 8.408451939 8.490393915 8.353790966 7.987167892 159147413 cbeA Organic Remediation Aromatics Chlorinated aromatics Cupriavidus necator 8.648434213 8.326206276 8.640940065 8.338324333 8.606377139 8.359411314 124261240 pcpB Organic Remediation Herbicides related compound Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 9.358920147 9.109684988 9.11074985 8.992427792 9.120759194 9.026596859 8.773004279 9.063646215 8.77543142 9.077375247 9.048197887 9.069351435 72122838 Xamo Organic Remediation Other Hydrocarbons Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.857659726 9.009062842 8.880581826 8.263815382 8.372558625 8.244953033 8.672146753 8.846520909 8.490589675 8.580333241 8.366998823 8.638831559 63255153 type_III_secretion virulence secretion Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 8.61036846 8.257821736 8.359548801 7.679483375 7.693126755 7.6452681 8.061029124 7.701514179 8.091309859 7.875847001 7.809119032 7.735416571 170776246 pcc Carbon cycling Carbon fixation Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 8.913825184 9.062497168 8.614326035 9.129277324 9.186494851 8.793012439 9.157164966 9.049636119 8.936521727 9.042662071 8.954614083 9.002205892 118170724 xylA Carbon cycling Carbon degradation Hemicellulose Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 9.031434538 9.092163423 8.893416454 9.434317538 9.258332062 9.127208225 9.431025432 9.379885041 8.851165574 9.092691952 8.914549446 9.143413023 167731538 4HBH Organic Remediation Aromatics BTEX and related aromatics Xanthomonas campestris pv. campestris 8.217978428 8.220856738 7.943856969 7.737186497 7.506411927 7.892319947 7.339937389 7.632419733 7.495380422 7.677632251 69286520 TerZ Metal Resistance Tellurium Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 8.08580521 8.12276486 7.554150975 7.874530203 7.949053112 8.029981837 7.527246024 8.323564294 7.860693305 7.823670853 10173484 ChrA Metal Resistance Chromium Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 8.102594439 8.209717279 8.142714293 85774602 pimF Organic Remediation Aromatics Aromatic carboxylic acid Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 8.605616953 8.148482891 8.294107095 8.148577395 8.00947923 8.248529796 8.126578411 8.206993193 7.98515838 7.873656176 7.955733925 190700412 pnbA Organic Remediation Aromatics Nitoaromatics Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 9.018361548 8.775491918 8.924277795 8.73747468 8.59868128 8.765268136 8.726587181 167647811 pcaG Organic Remediation Aromatics Other aromatics Caulobacter sp. K31 9.935664872 9.56280713 9.673495228 9.649703196 9.725952662 9.853580754 9.798904576 9.814668628 9.906443915 9.811930714 10.08638427 9.68033643 121610032 AceA Carbon cycling Carbon degradation others Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 8.570968283 8.453396031 8.705861549 8.917678046 8.989929841 8.818604993 8.674806169 9.277727207 8.630147961 8.916774427 8.682305082 9.045727315 161393399 oxyR Stress Oxygen stress Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 8.179998406 8.694041843 8.637021745 8.620454446 8.938951616 8.78743788 8.788756444 8.747196016 126462168 cytochrome Energy process Energy process Rhodobacter sphaeroides ATCC 17029 8.629885799 8.571544208 8.409055554 8.41761455 8.720682298 8.744261945 9.1843338 8.786541073 8.469037673 8.487911411 8.652213542 8.524929243 156740707 sigma_24 Stress Sigma factors Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 8.510803398 8.490056694 8.404412307 8.442211731 8.278287705 8.386616328 8.38675491 8.376104823 8.432305587 8.266689053 8.267156337 8.128007222 15621738 catechol_B Organic Remediation Aromatics Other aromatics Sulfolobus tokodaii str. 7 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus;species:Sulfolobus tokodaii; 8.520631983 8.449253693 8.770384593 7.853242634 7.726755481 7.817207165 7.967515953 7.660514152 8.001278516 7.569243663 7.46141915 7.778920007 91784295 exaA Organic Remediation Chlorinated solvents Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 11.00747198 10.78571675 10.93816112 10.11799103 10.0900767 10.58620312 10.18283445 10.66923353 10.25965609 10.3812123 10.28869543 59801112 ZntA Metal Resistance Zinc Neisseria gonorrhoeae FA 1090 9.868256548 10.03078455 9.805405858 9.77562486 10.10402819 10.34666273 10.44226817 10.64362556 10.44679965 10.4984529 10.47335387 10.6491189 219996943 ppx Phosphorus Phosphorus utilization Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 9.987238783 10.18139725 9.247387715 8.840473753 8.938670645 89053937 glnA Stress Nitrogen limitation Jannaschia sp. CCS1 8.355532132 8.524770502 8.405704246 8.056654087 7.923972475 8.001095354 8.120760145 7.60703353 8.035366953 8.319002984 8.253896671 163733481 gyrB other category gyrB Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 8.419633593 8.370127503 8.552834203 7.781651465 7.41864059 7.587094724 7.519617156 7.10663109 7.751079185 7.48918914 7.422327595 7.654747373 146327854 phenol_oxidase Carbon cycling Carbon degradation Lignin Lentinus tigrinus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Lentinaceae;genus:Lentinus; 8.227475119 8.379964592 8.094407578 8.551169807 8.543107626 8.458758083 8.618610642 8.503395341 8.314691338 8.621969926 8.574582972 8.285626286 148261067 ABC_transporter_III Bioleaching other category Acidiphilium cryptum JF-5 9.910811706 9.812736569 9.739971434 9.660161033 9.590962076 9.280676146 9.47648801 9.532525524 9.615043735 9.615627917 9.636295709 9.607652033 166030891 ChrA Metal Resistance Chromium Dorea formicigenerans ATCC 27755 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Dorea;species:Dorea formicigenerans; 8.873011013 8.986968752 9.223707309 8.412151714 8.387922551 8.363404375 8.134039464 8.270010683 8.345238445 8.279944665 8.243273759 8.565662438 199594017 narG Nitrogen Denitrification uncultured bacterium 9.226630619 9.142402303 8.199737411 8.343129018 8.35153628 8.778440733 8.507568331 8.57798648 8.64140993 8.585786532 8.313147203 119817678 TerC Metal Resistance Tellurium Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 9.377381864 9.522809988 9.473557534 8.946457998 8.722319546 8.816618044 8.66736166 8.58378358 8.568426276 8.722369704 8.990396937 154159159 nmoA Organic Remediation Aromatics Nitoaromatics Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.595571241 8.470362583 8.204694844 8.555739831 8.418214329 8.630691128 8.444387799 8.759888948 8.609331814 8.445416455 8.403868762 8.290578251 146195550 napA Nitrogen Dissimilatory N reduction Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.367204046 8.558176931 8.082969214 8.119304431 8.075477159 8.292376137 8.399314637 7.96394104 8.747536428 8.263466517 8.440105562 8.197868139 161166505 alkK Organic Remediation Others Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 9.707383424 10.08722249 10.0512892 9.387491078 9.555818128 9.473289746 9.81941962 9.250865003 9.662756382 9.749195545 211957070 nitA Organic Remediation Aromatics Other aromatics Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 9.608685276 9.547103497 9.473585626 9.209410848 9.411078898 40742680 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 8.696387715 9.315084449 9.189799899 9.038201736 9.077413973 8.704926464 9.101570169 8.562247644 9.015000168 9.126118778 8.433770225 255348783 obgE Stress Radiation stress Chlamydia trachomatis 70 superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Chlamydiaceae;genus:Chlamydia;species:Chlamydia trachomatis; 8.619946781 8.342318316 7.707497881 7.594498735 7.459763814 7.482281079 7.801298907 227882613 endochitinase Carbon cycling Carbon degradation Chitin Halogeometricum borinquense DSM 11551 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halogeometricum;species:Halogeometricum borinquense; 8.574713584 8.480636636 8.755980835 7.867271256 8.087709995 8.181216252 8.022857932 8.062390209 8.153586946 7.915609567 8.05127844 8.228315675 209485931 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.687077855 9.533484938 9.521202274 8.253934883 8.35580513 8.87494674 8.827450578 8.180077908 8.555355869 8.737094093 8.929223871 8.830387108 241773352 ara Carbon cycling Carbon degradation Hemicellulose Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 8.6963745 8.153151443 8.488526667 8.337432132 8.158231869 8.067597628 8.109493001 8.261820299 8.243279734 8.341259626 8.271191471 8.505447086 39648997 fnr Stress Oxygen stress Rhodopseudomonas palustris CGA009 9.097512951 8.888758751 8.96730387 8.445907185 8.142636819 8.64680656 8.752128215 8.564578571 8.77026467 8.654567188 8.863024219 37527847 TerC Metal Resistance Tellurium Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 8.145431728 8.223582331 7.119668603 7.202856459 145213691 CadA Metal Resistance Cadmium Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.950902021 9.170862043 8.73564755 8.943635219 8.836451921 9.189629604 9.474940086 9.192071941 9.427872663 8.974678186 9.172735849 9.284413122 71908744 sox Sulphur Sulphur oxidation Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 9.123127638 8.96170624 9.039732194 8.724189884 8.468010179 8.491953658 8.76546107 8.728005099 39984401 Arylest Organic Remediation Aromatics Other aromatics Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 9.429836565 9.377590593 9.477692347 8.454248751 7.63636829 8.715452405 8.968064927 8.530396731 8.679683797 8.885048532 9.027165131 8.975731453 225045070 sigma_24 Stress Sigma factors Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 8.168813516 8.150473858 8.146659359 7.98213563 8.278085067 7.855275611 7.218528286 7.45759939 7.919471917 7.44917405 7.461367982 7.723305294 260772582 pstB Stress Phosphate limitation Vibrio metschnikovii CIP 69.14 7.987087648 8.028708632 7.433658804 7.495416889 7.220092579 7.434973806 7.7953213 7.697146195 7.588397637 90335176 pcaG Organic Remediation Aromatics Other aromatics Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 9.280639715 8.794813695 8.317616005 9.336929765 9.18421849 9.024339341 8.429415809 9.35929048 8.654942392 9.003607085 9.108624991 8.556804343 159030269 ahpC Stress Oxygen stress Microcystis aeruginosa PCC 7806 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 8.608914402 8.339449195 8.677489877 8.077620825 7.66224517 7.857166545 7.550380655 7.582666427 7.907085984 113526720 Catechol Organic Remediation Aromatics Other aromatics Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.721429516 8.465514816 8.694319095 8.943234749 8.517329394 8.20070741 8.612770817 8.636243472 8.605920051 8.526976408 8.445264836 8.316490927 222447724 amyA Carbon cycling Carbon degradation Starch Chloroflexus sp. Y-400-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus; 9.378667111 9.081829332 8.681466586 9.067301582 9.081172829 8.997513814 9.419135506 9.319148264 8.878246388 8.910737786 8.986782849 8.776384172 169761682 tfdA Organic Remediation Aromatics Chlorinated aromatics Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.672590226 8.859970555 8.504928583 8.17203829 8.196064341 8.361548368 7.567408441 261354516 iuc virulence aerobactin Verticillium albo-atrum VaMs.102 8.543001616 8.628452819 8.584507851 8.58492445 8.769288586 8.636752552 8.372876679 8.896111559 8.504737797 8.668584264 8.577969944 8.563217481 90578930 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Vibrio angustum S14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium angustum; 8.705814437 8.811690194 9.000313669 8.294893315 8.021490557 8.092621812 7.830385782 7.636504935 8.106957804 7.994015154 8.06423963 8.229858703 213692848 ara Carbon cycling Carbon degradation Hemicellulose Bifidobacterium longum subsp. infantis ATCC 15697 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 9.260917984 8.507652892 9.100794341 8.92095001 9.064664985 8.763111464 8.835639964 9.207790615 8.829686154 9.204263013 9.082734522 8.896455604 188481101 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 8.262763849 7.915787499 7.239868128 7.350882674 7.644649693 7.662311275 7.142675869 7.422777027 7.417079565 7.722654723 197932282 PobA Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces sviceus ATCC 29083 9.946239844 9.638449799 10.03782453 9.338856898 9.438628702 9.357568963 9.438606646 9.144028732 9.655841741 9.187564283 9.201964937 9.355296776 88702187 pstC Stress Phosphate limitation Congregibacter litoralis KT71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 8.857131586 8.703129469 9.007857117 8.175338613 8.25209698 8.423504245 8.321956078 8.262613633 8.372040977 8.262504804 8.161396613 8.570878584 218531372 gyrB other category gyrB Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 8.48106825 8.484647765 8.5908006 7.857856521 8.032152524 8.016295403 7.927758185 7.728939082 8.002243994 7.890446715 8.028689601 118033149 rubisco Carbon cycling Carbon fixation Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.688575609 8.635038488 8.291018849 9.237288987 9.044758076 8.975537008 8.779220713 9.011569731 8.583584445 8.796296041 8.856283039 8.393414223 67157865 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 9.651273129 9.716506631 9.434542626 9.261742343 9.262357259 9.002174901 9.459657066 8.985079906 9.549374499 9.08088513 8.955948049 9.200930906 78196632 ppx Phosphorus Phosphorus utilization Synechococcus sp. CC9605 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 9.251695615 9.187559112 9.597088309 9.024113395 9.074970549 9.024336237 9.089626341 9.588427886 9.035073702 9.508791034 9.236182326 9.301345395 56542578 SMR_antibiotics Antibiotic resistance transporter Zymomonas mobilis subsp. mobilis ZM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Zymomonas;species:Zymomonas mobilis; 10.28753744 9.96210763 10.08419568 9.711766647 9.850898481 9.70250665 10.01250574 10.0629634 9.288639026 9.6383632 9.815038197 9.596098884 255767221 phoA Stress Phosphate limitation Bacillus subtilis subsp. subtilis str. 168 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 9.275408139 9.247035922 9.344708444 8.582379132 8.22574609 8.464481844 8.264799448 8.138415115 8.275238715 8.452493345 8.46705399 8.673182277 89351557 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.806468533 8.816415115 8.704104428 8.16810911 8.15593801 8.299342753 8.603346977 8.424640313 8.630381511 8.426150861 8.3514299 8.377553219 87282669 glnA Stress Nitrogen limitation Synechococcus sp. WH 5701 9.025320871 9.041404798 8.579850316 8.455509087 8.719107526 8.674451806 8.526152092 8.579975005 8.601923554 8.795980547 9.033387681 8.736403418 6910983 mnp Carbon cycling Carbon degradation Lignin Dichomitus squalens 8.251859657 8.210589844 8.319905678 8.177283933 7.936919899 8.420336755 8.55637556 8.333427402 8.461847792 8.236593686 8.280379773 262165331 iuc virulence aerobactin Vibrio mimicus VM223 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 9.041832946 9.053957899 9.171682071 8.670992864 8.483225308 8.562188363 8.347122612 8.513053514 8.451944921 8.608893865 8.412820878 8.668245249 154686267 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bacillus amyloliquefaciens FZB42 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 9.858106625 9.243388414 9.254355606 9.452222483 9.270352353 9.082027156 9.438399142 9.418048097 9.074163812 73748096 ArsC Metal Resistance Arsenic Dehalococcoides sp. CBDB1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 9.309559922 9.270413153 9.511095043 8.754477765 8.539938858 8.572399324 8.500786953 8.471016618 8.453170821 8.527676994 8.454168387 8.815421603 121554214 linB Organic Remediation Pesticides related compound Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 9.942135882 9.774410487 10.09063702 9.109333555 9.001157827 9.006260384 8.885863652 8.7164065 8.929105224 8.85763307 8.965151014 9.313760165 179346777 CopA Metal Resistance Copper Methylobacterium populi BJ001 9.211479621 9.073661492 9.226089452 8.769139016 8.604320151 8.457908902 8.445636074 8.597074259 8.431424297 8.500803062 8.487060662 8.672750601 160428478 pstA Stress Phosphate limitation Clostridium phytofermentans ISDg 8.513644088 8.36641057 8.572618232 7.733562128 7.878513168 7.817720336 7.420350252 7.931231201 7.878959999 7.630073525 7.963532219 217966629 ChrA Metal Resistance Chromium Dictyoglomus turgidum DSM 6724 superkingdom:Bacteria;phylum:Dictyoglomi;class:Dictyoglomia;order:Dictyoglomales;family:Dictyoglomaceae;genus:Dictyoglomus;species:Dictyoglomus turgidum; 8.932397317 8.640315391 8.948740266 8.328648335 8.202281113 8.134432025 8.253096139 8.082619722 8.217717572 8.176249632 8.054040463 8.235002461 146402357 ATP_synthase_F1_or_F0 Bioleaching other category Acidiphilium cryptum JF-5 8.303470819 8.560165951 8.566221453 8.177887719 7.923856094 8.587054643 9.1210181 8.138403331 9.042790065 8.308212821 8.276221802 8.127105371 242214611 endochitinase Carbon cycling Carbon degradation Chitin Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 9.856477674 9.736914037 9.928191407 9.26326898 9.268165755 9.108322677 8.968199546 9.191284459 9.005225254 9.137322522 9.071191512 9.364064863 68346783 vip virulence virulence protein Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 9.0284463 9.065906598 8.719996985 9.062243643 8.968986406 8.976646281 8.896257961 9.222293093 9.564583557 9.421104853 9.476920916 8.850620345 197790482 alkK Organic Remediation Others Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 8.23333365 8.186486399 8.172332056 8.213032111 8.125626958 7.706786509 8.16725807 8.163998861 8.020421993 8.074893552 7.98005617 186470798 CopA Metal Resistance Copper Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.602330333 8.600250958 8.522486437 8.715737546 8.653813713 8.502770261 8.56061111 8.959666339 8.766264706 9.031198248 9.007462025 9.082306499 139478509 mer Metal Resistance Mercury uncultured soil bacterium superkingdom:Bacteria; 8.920921179 8.832342495 8.786205184 8.254620858 8.470046348 8.400171842 8.57235541 8.170809928 8.533026685 8.294412397 8.579801284 8.50820152 58264298 nbaC Organic Remediation Aromatics Nitoaromatics Cryptococcus neoformans var. neoformans JEC21 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Tremellomycetes;order:Tremellales;family:Tremellaceae;genus:Filobasidiella;species:Filobasidiella neoformans; 9.220048967 9.122831313 8.987113369 8.491477866 8.510455513 9.132611191 9.361781979 9.02144867 9.479882761 8.721089144 8.55803444 8.872902793 126721140 obgE Stress Radiation stress Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.34427626 8.350046461 8.523634576 8.732875128 8.378107436 8.176413881 8.817224676 8.83995221 8.406199514 8.74645579 8.672466297 8.215110717 196201765 endoglucanase Carbon cycling Carbon degradation Cellulose Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.044400788 8.029662084 8.025469816 6.88911077 7.269489727 6.821839391 6.699067318 6.904854708 7.098563675 7.435861284 91686229 cymA Organic Remediation Aromatics Other aromatics Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.840367465 8.711003161 8.814329944 8.241212289 8.078633544 8.173617125 8.049955225 7.949729606 8.21067823 8.086274024 8.087810593 8.194418165 39997199 tutFDG Organic Remediation Aromatics BTEX and related aromatics Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 8.044679485 8.136166566 7.51300662 7.504228047 7.223094514 6.890829 254513327 AceA Carbon cycling Carbon degradation others Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 8.464107165 8.475908957 7.910711074 8.040525533 8.167541413 8.501771495 7.796380207 8.557869029 7.879922657 7.887030018 8.050487269 66801927 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 7.964477987 7.475273493 7.770259514 8.113270948 7.786949945 8.242431033 7.826411102 7.68755042 7.781477823 170728208 katE Stress Oxygen stress Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 7.974559994 7.815576017 6.843169627 6.93227567 7.092866081 6.820736631 6.860766856 7.45431367 7.209003782 6.863605338 7.280726417 149144176 BchY other category chlorophyllide reductase Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 9.342089059 9.297191427 9.207541807 9.438483145 9.384547036 9.000787395 9.482708805 9.479028009 9.360026805 9.569644749 9.705230447 8.996931578 227989600 pstB Stress Phosphate limitation Meiothermus silvanus DSM 9946 9.460015367 9.285649652 9.55898489 9.768092462 9.610597507 9.533136155 9.392020424 9.945990739 9.516340064 9.840191393 9.789584969 9.668733704 82735669 nmoA Organic Remediation Aromatics Nitoaromatics Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 9.874702197 9.398349452 9.001770628 189500176 pstA Stress Phosphate limitation Chlorobium phaeobacteroides BS1 8.661648327 8.622145946 8.520868557 8.336606454 8.24122088 8.049364266 7.994609996 8.034897643 8.261320186 8.21788787 8.084217882 8.567542031 194186881 major_capsid_protein Bacteria phage STRUCTURAL Bacillus phage phi29 order:Caudovirales;family:Podoviridae;genus:Phi29-like viruses; 9.595219854 9.583213067 9.82095375 9.047812466 8.904976806 8.736783189 8.879825889 8.850259651 9.1462193 251777427 hly virulence hemolysin Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.677640082 8.923181972 8.75147473 8.956280563 9.079736436 9.086824663 8.749863738 9.001103012 8.747604572 8.886238752 9.066788002 8.560993242 114571544 hrcA Stress Heat shock Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 8.613765022 8.725459362 8.994024671 8.824643439 9.082216505 8.58038521 8.570779991 9.111348511 8.61765609 8.983963811 8.825634776 9.010566422 119391415 narG Nitrogen Denitrification uncultured bacterium 8.334078218 8.538601993 8.36363541 7.810454748 7.645273133 7.845759594 7.903001799 7.702407508 8.425557937 7.418518078 7.742400046 7.732877998 113927073 aclB Carbon cycling Carbon fixation Persephonella sp. EPR351 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Hydrogenothermaceae;genus:Persephonella; 8.165036667 7.999783674 6.978051988 7.452468548 160363924 iro virulence Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.420781917 8.580000089 8.522691551 8.261641349 7.882817501 8.139333042 7.9304801 7.698071923 8.180755445 7.860792127 7.806395774 8.051113578 260608635 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 8.949370836 8.908857852 8.89945737 8.369284081 8.02095637 8.029870103 8.39092447 8.064147905 8.169575699 8.159772252 8.500395227 145590783 pmdAB Organic Remediation Aromatics Others Pyrobaculum arsenaticum DSM 13514 8.821583577 8.742129735 8.861658858 8.258434698 8.023550729 8.250388187 8.101658705 7.850325192 8.505179686 7.870856862 7.798236023 8.067190919 223934969 fnr Stress Oxygen stress bacterium Ellin514 8.648558835 8.706132045 7.923232198 8.126149399 8.639490615 7.809233205 8.844829631 7.708695785 7.543802556 8.146151187 229746441 fnr Stress Oxygen stress Stackebrandtia nassauensis DSM 44728 8.685170659 8.805409408 8.838938365 9.149315053 8.955874471 8.920384245 8.874488729 9.241710756 8.538260694 9.04760369 8.942750115 8.552819319 169639106 sigma_24 Stress Sigma factors Candidatus Desulforudis audaxviator MP104C superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Candidatus Desulforudis;species:Candidatus Desulforudis audaxviator; 9.735154548 9.858296879 9.571962959 9.100099395 9.196377566 9.123708221 9.604464536 9.293348749 9.426736898 9.118701563 9.143873207 9.251465554 82618403 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium 8.124850439 7.982226206 8.264895348 7.922620081 7.555510595 7.977374839 7.713845151 7.431698259 8.02141466 8.035467238 7.890467539 8.015002201 160917625 narG Nitrogen Denitrification uncultured bacterium 8.306760201 8.16973629 7.58417524 7.734305443 8.071479545 8.207586975 7.230543259 8.256279605 7.459547717 7.869063168 7.796795105 187767670 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 8.79060504 8.662067039 8.907513254 8.440052735 8.506754612 8.397493556 8.140791232 8.258755562 8.580456931 8.325872975 8.48142144 8.207018356 116665666 ZntA Metal Resistance Zinc Methanosaeta thermophila PT 8.019530636 8.053427282 8.164395232 7.475823202 7.445749435 7.264898387 7.148127646 7.712382454 7.38788444 7.112250965 7.408321876 223896443 acetylglucosaminidase Carbon cycling Carbon degradation Chitin bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 8.474366123 8.327334284 8.395423998 7.82599599 8.007174545 7.858313848 7.871729694 7.73194831 7.470267904 118762970 vanA Carbon cycling Carbon degradation Others Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.857974257 9.101186807 9.137176905 8.624706836 8.686294848 8.567137546 8.569551795 8.459228135 8.855649753 8.449160121 8.421600525 8.658323204 256776221 sigma_24 Stress Sigma factors Streptomyces hygroscopicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces hygroscopicus; 9.608613711 9.788210068 9.764922673 8.401347283 8.838066362 9.261477047 9.5172689 8.930608393 9.510962218 8.893955493 8.898919944 9.188888054 54309970 Arylest Organic Remediation Aromatics Other aromatics Photobacterium profundum SS9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 8.422276311 8.178198804 8.62080607 8.189059019 7.824106059 8.162831011 8.30161314 8.416105477 8.302676511 8.356350354 7.804058318 153006465 sigma_24 Stress Sigma factors Anaeromyxobacter sp. Fw109-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 8.448495447 8.639353116 8.45545473 8.84226401 8.550720957 8.260940108 8.728961472 8.867795368 8.680588952 8.743364591 8.57210892 8.919122204 111071924 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.532038855 8.43616594 8.517789887 7.861539232 7.633734911 7.780418835 7.756047966 7.400194758 7.779766927 7.50287071 7.513302337 7.903753422 148520702 Catechol Organic Remediation Aromatics Other aromatics Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 8.514752779 8.181735057 8.449855181 8.209901513 8.250188721 8.007155963 8.543367163 8.268619689 8.276546441 8.691403231 8.098657757 29607083 proX Stress Osmotic stress Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 9.799205016 9.570603965 9.182232944 8.17149036 9.216012063 9.810603279 8.868796044 9.392875991 8.704146142 9.053603087 8.642581533 207088322 mer Metal Resistance Mercury Nitrosococcus oceani AFC27 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 8.505840649 8.367356813 8.72701055 8.206588501 8.046978004 7.860867862 7.854521977 7.843836394 8.016719664 7.782360953 7.642397855 8.030413736 113526719 benAB Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.929902547 8.438317734 8.309373775 8.923561388 8.780264927 8.416932442 8.879615549 8.559593857 8.512791367 8.522575385 8.529582447 8.326014086 196180418 mer Metal Resistance Mercury Microcoleus chthonoplastes PCC 7420 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus chthonoplastes; 8.096083398 8.232438699 8.211829291 8.178885623 8.195508049 7.953146748 8.031629086 7.854270548 7.821184159 7.882624095 8.030114323 157679411 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.945378806 7.375014952 223938306 AceB Carbon cycling Carbon degradation others bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 8.110961553 8.121059389 7.582968141 7.541354154 7.413695286 6.944908649 7.175610339 7.597707973 188591149 pilin virulence pilin Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 8.760389689 8.784621744 8.712377549 8.988144764 8.992045933 8.827754255 8.570245731 8.797396649 8.844094187 8.781990033 8.792083711 8.658736718 182633294 obgE Stress Radiation stress Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 8.490405626 8.408267937 8.423537106 7.701955875 7.655664334 7.562918794 7.759999403 7.361050741 7.551435867 7.620070774 7.757562295 38016628 nitA Organic Remediation Aromatics Other aromatics Klebsiella pneumoniae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella; 8.982536815 8.883216991 8.972659427 8.741668049 8.923846225 8.916948155 8.720210159 9.164521193 8.71791045 8.981194367 9.031119491 8.968647172 247536635 AceA Carbon cycling Carbon degradation others Dickeya zeae Ech1591 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 8.55047561 8.455138781 8.544984425 8.218894012 8.171511545 8.584738557 8.072848703 8.164350146 8.243657059 7.898708735 87198498 ppx Phosphorus Phosphorus utilization Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 7.405086316 7.445255629 7.715206912 7.438320952 7.298957575 7.751810031 7.192524982 7.595182469 7.426724195 115351575 silC Metal Resistance Silver Burkholderia cepacia AMMD superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 8.032190502 8.325854567 8.01914832 7.822401639 7.832431152 7.931161609 7.453536729 76667210 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.275921662 8.134066387 8.168494113 8.185209986 8.154277671 8.066819663 8.041013861 8.113878899 8.283600306 7.978025088 7.877571443 7.850166331 260220880 glnA Stress Nitrogen limitation Curvibacter putative symbiont of Hydra magnipapillata 8.288816004 8.307491584 7.74548777 8.333530668 8.423343606 8.342192659 8.026026671 8.693306536 7.686249665 8.080932406 7.995016786 167361723 mer Metal Resistance Mercury Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.319743283 8.176752099 8.371766244 8.510762615 8.332734742 8.096921325 8.6227198 8.178779079 8.271681659 8.452018802 8.682067766 71157478 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.377879531 8.247115642 8.441555911 8.431376518 8.104980975 7.801750968 8.128982165 8.427198362 8.326732442 8.264165839 8.119863439 219946374 Arylest Organic Remediation Aromatics Other aromatics Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 8.750134487 8.815788752 8.663905019 8.882845448 8.234172126 39837158 Catechol Organic Remediation Aromatics Other aromatics Pseudomonas stutzeri superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.239679202 8.07632582 8.369762876 7.713303676 7.724728912 7.887312188 8.158988016 7.671219918 8.156926282 7.678705692 7.891886655 7.740473545 206686313 katE Stress Oxygen stress Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 10.22131101 10.20991965 9.947549661 10.66947731 10.55148981 10.05148181 10.70704869 10.60682487 10.32793987 10.46576188 10.03653273 154238339 single_strand_annealing_protein Bacteria phage REPLICATION Streptococcus phage M102 order:Caudovirales;family:Siphoviridae; 8.709820886 8.539071443 8.710890174 8.109967783 8.323230914 8.053998009 8.235240806 8.208298584 8.274942931 8.45065879 8.399757958 8.203167658 51534847 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.517755889 8.240757733 8.286748412 7.998580931 7.803238393 7.864505524 7.579941911 7.774900893 7.811699793 7.678052381 7.793498532 119378075 phn Organic Remediation Herbicides related compound Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.260663949 8.172850779 8.310348172 7.67890355 7.466294931 7.663657957 7.594970937 7.188854256 7.976530619 7.281260113 7.424068623 7.571042802 151562866 gyrB other category gyrB Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 9.211942845 8.96404707 9.177299742 8.253314227 8.381194872 8.212439239 8.046840857 8.177307203 8.200090233 8.409180726 8.66506309 150036140 sox Sulphur Sulphur oxidation sulfur-oxidizing bacterium ODI4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 6.959662499 6.857577323 6.871755137 7.405333315 109660030 ureC Nitrogen Ammonification unidentified bacterial contaminant superkingdom:Bacteria; 9.742886285 9.700329222 9.732673294 9.405941291 9.194000991 8.936907343 9.483640969 9.544303074 9.628516141 9.428400772 9.441574697 9.359676461 226329442 narJ Stress Oxygen limitation Proteus penneri ATCC 35198 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus penneri; 8.865219894 8.993741956 9.092499026 8.448051421 8.029792403 7.921407391 8.229780991 7.940666595 7.802150686 8.005679647 8.040099637 8.56453702 83592134 nifH Nitrogen Nitrogen fixation Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 8.103550113 8.393849578 7.680397294 7.518798059 7.62083106 8.089738321 7.631615149 8.069015019 7.8147375 7.696832743 8.124319588 189192476 Catechol Organic Remediation Aromatics Other aromatics Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 8.118918301 7.985382145 7.559972389 7.267928374 7.343275283 7.51283474 7.30763071 7.926727591 283948343 obgE Stress Radiation stress Conexibacter woesei DSM 14684 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Conexibacteraceae;genus:Conexibacter;species:Conexibacter woesei; 8.813185834 8.885028678 8.792601794 8.494619876 8.577565492 8.98783377 9.276320645 8.672659921 9.148035749 8.675630834 8.705150227 8.89563174 118038050 nmoA Organic Remediation Aromatics Nitoaromatics Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8.054371406 8.104659571 7.417500869 7.451328781 7.787346403 8.036735647 7.650813748 8.151738973 7.692465948 7.399087302 7.847089138 219858049 ureC Nitrogen Ammonification Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 8.449112579 8.068599404 8.352454035 8.141854859 7.809002856 8.229482044 8.018571592 7.878416718 8.486480141 7.849431647 7.82769321 7.837793154 194344082 sigma_24 Stress Sigma factors Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.885254629 8.938692206 8.73554146 8.398622605 8.614538863 8.928838552 9.275729955 8.504693511 9.478667463 8.808104911 8.976012765 8.746961556 119714112 mmoX Carbon cycling Methane Methane oxidation Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.358284745 8.457724801 7.982553989 7.941562415 7.8961343 7.866260798 7.15980239 7.436310227 7.68897782 7.856656252 118617498 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 8.833704299 8.933875497 8.639594308 8.348609721 8.075225965 8.327192605 8.594272513 8.289272138 8.609926508 8.329723211 8.574511529 8.392514991 77962143 Arylest Organic Remediation Aromatics Other aromatics Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 8.476292644 8.740039431 8.736104953 8.245811365 8.366078326 8.347732622 8.576718032 8.814415051 8.852590361 8.603916012 8.737668989 269918205 iro virulence Klebsiella variicola At-22 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella variicola; 9.109444238 8.971766176 9.100200483 8.865576948 8.807372759 8.823974423 8.958061998 9.21459667 8.805007432 9.237251387 9.291175658 8.745573657 93453381 pstB Stress Phosphate limitation delta proteobacterium MLMS-1 10.07608158 9.972974645 10.2973723 9.65462468 9.655177614 9.248834957 9.807532503 10.01151545 9.862319526 9.951605335 9.88184585 10.07031622 34102804 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 8.421989736 8.70262444 8.788409027 8.772885354 8.777860354 8.493078914 8.716883059 9.328227531 8.824397465 9.101988382 9.132981245 9.232357893 83572402 sigma_70 Stress Sigma factors Moorella thermoacetica ATCC 39073 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Moorella;species:Moorella thermoacetica; 8.785371523 8.678471238 8.342085244 8.330442612 8.366187256 8.563377698 21954801 ChrA Metal Resistance Chromium Synechococcus elongatus PCC 7942 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus;species:Synechococcus elongatus; 9.360606462 9.224022593 9.525726001 8.814352111 8.684126298 8.623067103 8.606924769 8.567392396 8.567885427 8.552978895 8.475553062 8.817526954 154154999 AceB Carbon cycling Carbon degradation others Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 7.002081157 7.470223067 167669118 Al Metal Resistance Aluminum Anaerotruncus colihominis DSM 17241 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Anaerotruncus;species:Anaerotruncus colihominis; 8.715981922 8.928027938 8.966188245 8.47026875 8.566420096 8.261551094 8.547473385 8.506922943 8.409896969 8.486762428 8.33296956 8.448460888 138897063 nifH Nitrogen Nitrogen fixation Geobacillus thermodenitrificans NG80-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermodenitrificans; 7.905225888 8.108546785 7.352761649 7.54761437 7.56425558 7.255957673 7.563780372 7.765967647 7.43658411 7.378585983 55773206 catB Organic Remediation Aromatics BTEX and related aromatics Thermus thermophilus HB8 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 9.321461066 9.247537303 9.500940118 9.094279771 9.055462993 8.931399143 8.783540626 8.714503435 8.665232434 8.840368965 8.835424233 8.886545223 147919060 alkK Organic Remediation Others uncultured methanogenic archaeon RC-I superkingdom:Archaea;phylum:Euryarchaeota; 8.737672558 8.783183133 8.209106828 8.202309785 8.206856735 7.737275202 8.319960642 8.249785045 8.412165684 8.353109453 8.498619246 15605964 fnr Stress Oxygen stress Aquifex aeolicus VF5 7.745850119 7.582740877 7.558894224 7.397562004 7.479381425 7.871695554 7.514492304 7.582008998 7.522509874 84788778 B_lactamase_A Antibiotic resistance Beta-lactamases Erythrobacter litoralis HTCC2594 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 8.194227177 8.260515373 8.071136455 8.022013529 7.921519045 7.654479984 7.715795285 8.243117443 8.142634259 8.003571065 7.978924413 8.001259061 116623185 sigma_24 Stress Sigma factors Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 9.123863963 9.13218626 9.271903423 8.617926432 8.603470089 8.732232417 8.488176947 8.308911116 8.732691529 8.561066566 8.473260679 8.85046333 115358084 tftH Organic Remediation Aromatics Chlorinated aromatics Burkholderia cepacia AMMD 9.316046895 9.348783858 9.368222815 8.626613019 8.605841098 8.907688663 9.237992885 8.613237626 9.067611798 8.686974464 8.91060673 8.624747722 111023304 sigma_24 Stress Sigma factors Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.920689144 8.991789204 8.805514719 8.106499283 8.660382219 8.597640443 9.077103984 8.063943954 8.812274793 8.526284781 8.810340366 8.853744827 221081731 Arylest Organic Remediation Aromatics Other aromatics Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 8.552886039 8.877846919 8.943227776 9.134154545 8.985883641 8.761134996 9.361641484 9.306795198 8.867198909 9.308194386 9.208261228 8.99393512 121604929 pmdAB Organic Remediation Aromatics Others Polaromonas naphthalenivorans CJ2 8.844365769 8.755081291 8.528279363 7.556114981 7.674377204 8.192857298 7.925607949 8.438040696 7.804521239 8.148600098 160899352 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 9.69418922 8.98335225 8.69964764 8.824545055 8.7068834 8.715462753 8.846432684 9.077918801 8.940576826 9.002848167 8.918717148 218463634 nhh Organic Remediation Aromatics Nitoaromatics Rhizobium etli Kim 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.299208802 8.089065045 8.399543232 7.750405062 7.911452288 7.688189418 7.4282725 7.982141922 8.007484168 7.878526844 7.79400722 7.856409674 115607477 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 8.350563826 8.080987486 7.964255918 7.559977179 7.320029861 7.610168273 7.454347216 7.328105512 8.026816479 7.502502661 7.332443049 7.690278353 89045891 oxyR Stress Oxygen stress Oceanicola granulosus HTCC2516 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 9.096234964 9.165601306 9.126787499 8.705676287 8.776875771 8.917925533 8.998700779 8.509381641 9.053388873 8.553852163 8.673734396 8.924295837 76803790 alkB Organic Remediation Other Hydrocarbons Ralstonia sp. PT11 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 7.864005567 8.132356452 8.437542407 7.600325477 8.147234885 8.415596133 8.158616334 8.525554387 8.177173414 62433256 carA Organic Remediation Aromatics Heterocyclic aromatics Nocardioides sp. IC177 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.105613689 8.09179826 7.96116768 8.142807852 7.888029011 8.057663189 8.300048494 8.285727758 8.470733688 8.19895566 7.930391996 111615430 ZntA Metal Resistance Zinc Verminephrobacter eiseniae EF01-2 9.149399941 8.566707528 8.691904491 8.47802201 8.277228573 8.144456168 7.922052959 7.865682257 7.954127525 7.970433398 8.280547349 164598114 exoglucanase Carbon cycling Carbon degradation Cellulose Clitocybe nuda superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Clitocybe; 8.539741583 8.28626875 8.522590411 8.127690381 7.778146669 8.384752742 8.559893851 8.179695639 8.402516814 8.093085458 7.952803853 219952012 nhh Organic Remediation Aromatics Nitoaromatics Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 9.923701964 10.11879553 10.00610417 8.853872363 9.274496882 9.743654539 10.31014235 9.778238143 10.04998915 9.383601361 9.502364942 9.77298039 226721443 iro virulence Azotobacter vinelandii DJ superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 8.195328018 8.319123191 8.177872875 7.954794059 7.895175409 7.772985722 8.161305544 8.112044337 8.191512711 7.7850963 120595970 gyrB other category gyrB Polaromonas naphthalenivorans CJ2 8.762282332 8.536470176 8.552197167 8.261773541 8.281178467 8.702657437 8.346025475 8.591558376 7.854233658 7.828176443 8.007179726 227967600 pstC Stress Phosphate limitation Tsukamurella paurometabola DSM 20162 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 8.702067538 9.128042574 8.525125229 8.603780964 8.609712887 9.308271082 9.50975972 9.595809766 9.300485754 9.545118902 9.494229281 9.648212292 218756279 ahpC Stress Oxygen stress Desulfovibrio vulgaris str. 'Miyazaki F' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 9.024092209 9.641266307 9.404809414 9.468606717 9.15597796 179347798 ureC Nitrogen Ammonification Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 8.298438244 8.104352534 7.893442071 8.115084388 8.023880475 8.131635855 7.827219058 7.727095639 7.610519166 23494621 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 8.424106455 8.743817126 8.577157995 8.142081931 8.119013441 7.682345667 8.058443598 7.805571184 8.157657475 7.704536732 7.842657628 7.932571985 146304637 superoxide_dismutase Bioleaching Metal Resistance Metallosphaera sedula DSM 5348 7.712234727 7.516802833 7.161699497 7.192910592 7.594238253 7.692850418 7.703677072 7.766339385 7.572015999 166857739 sdsA Organic Remediation Others Pseudomonas putida GB-1 8.663900869 8.65515444 8.660894305 8.309582476 8.243014344 8.319493612 8.420981253 8.408746711 8.729617788 8.614893711 8.759279766 8.518667477 66801943 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 8.210388607 8.146037598 8.333076598 7.352692442 7.37444566 7.914492837 7.691598835 7.368058518 7.553308799 7.619617688 7.619100949 145223409 CadA Metal Resistance Cadmium Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.323851777 7.931687713 7.821564673 7.472145684 7.440738383 7.155512274 7.426957072 7.814998685 7.356012571 7.526618485 7.582121824 35210331 gyrB other category gyrB Alicyclobacillus sp. DSM 11984 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus; 8.161493467 8.05970316 8.008387621 7.968717012 8.079519042 7.548389645 7.904285221 8.11606281 8.14990193 8.032613194 7.73324382 48527114 mcrA Carbon cycling Methane Methane production uncultured Methanomicrobiales archaeon superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales; 8.19936134 8.285241114 7.854571306 7.834072986 7.754299012 8.055530437 8.054746557 8.231890581 7.682810114 7.873909071 194359405 merF Metal Resistance Mercury Pseudomonas aeruginosa superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.607966694 8.544243898 8.580938368 8.692325593 8.924018831 8.983388172 218665071 phn Organic Remediation Herbicides related compound Acidithiobacillus ferrooxidans ATCC 23270 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 8.655135308 8.531380462 8.788968659 8.578094333 8.637364934 8.28929262 8.281645578 8.840816523 8.526980815 8.734865467 8.827845693 8.898977923 118504271 pstB Stress Phosphate limitation Pelobacter propionicus DSM 2379 8.123308346 8.028320302 7.990028646 7.48176545 7.914068902 7.936557018 8.238913649 121535083 pstA Stress Phosphate limitation Thermosinus carboxydivorans Nor1 8.544954085 8.30079445 7.512335231 7.592948183 7.664813809 7.279468514 7.107926396 7.795726341 7.066473035 7.398668564 7.676517637 145555481 nagG Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 9.957956395 10.19021259 9.968016613 9.505607593 9.588805173 9.46592014 9.377856009 9.606027517 9.369707884 9.567117824 9.570571729 9.879902396 116049493 ZntA Metal Resistance Zinc Pseudomonas aeruginosa UCBPP-PA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.379584324 8.471579706 8.764024286 8.634611028 8.923664492 8.775696548 8.660325519 9.227832763 8.902638855 9.026798997 8.70283518 8.777535967 222456319 pstB Stress Phosphate limitation Anaerocellum thermophilum DSM 6725 8.230087836 8.292538137 7.245507531 7.377589687 7.251925766 6.536034325 7.506354098 198262169 CopA Metal Resistance Copper gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.584110017 8.622377114 8.849384235 8.697222883 8.606998498 8.399173593 8.697770731 8.801669677 8.519786692 8.818801791 8.780711807 8.692319116 158520779 arsM Metal Resistance Arsenic Desulfococcus oleovorans Hxd3 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus;species:Desulfococcus oleovorans; 8.00233571 7.825690679 7.78394575 7.579785124 7.720987439 7.81804028 7.751633958 7.65977576 7.624900659 143753 CadA Metal Resistance Cadmium 8.466863442 8.268622316 8.737800162 8.084438956 7.912324935 8.113746172 8.022450698 8.239257822 8.235654359 8.396837843 8.365314567 126318010 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.547867983 8.941507635 7.753306511 7.621531818 7.764836676 7.986834269 7.869106334 8.22480557 7.895628691 8.056301055 8.144379995 119715090 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.20228645 8.33180919 8.614078979 7.869586905 8.105315687 8.270120414 8.195145428 8.270409366 8.203521525 8.356270353 8.429781754 8.187444662 209544810 pstB Stress Phosphate limitation Gluconacetobacter diazotrophicus PAl 5 8.834894535 8.470879346 8.840020139 8.475030221 8.355571423 8.242357526 8.009880397 8.40308901 8.549323787 8.510855605 8.282299855 8.446443425 229362018 iro virulence Pseudomonas fluorescens SBW25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.335840374 8.529540229 8.280151532 8.37950258 8.431855774 8.301637656 8.861801223 8.855604944 8.266643491 8.693415359 8.949417798 8.622205043 116695290 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.151436778 7.985485658 7.558070105 7.567440735 7.88555172 7.759298255 7.284958201 7.911142105 7.597060678 7.802143134 120865911 iro virulence Neisseria meningitidis FAM18 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria meningitidis; 10.67624822 10.75734319 10.6264639 10.1518757 10.20686884 10.51320525 10.80478302 10.44116504 10.90304473 10.34177898 10.20149438 10.30938317 71556185 B_lactamase_C Antibiotic resistance Beta-lactamases Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 8.528696007 8.571576221 8.70518504 7.945197509 8.163704624 8.446920824 8.436816306 8.601702854 7.89633606 8.080875606 8.574918249 148555548 nahA Organic Remediation Aromatics Polycyclic aromatics Sphingomonas wittichii RW1 8.392502084 8.621847828 8.640604715 8.694044104 8.674953432 8.772482882 8.991530964 9.048851307 8.825613345 9.110936039 9.316396176 8.97892952 56420884 pcc Carbon cycling Carbon fixation Geobacillus kaustophilus HTA426 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus kaustophilus; 7.042378983 7.636542328 71368137 TerC Metal Resistance Tellurium Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.29451432 8.273668898 8.067120623 7.774666017 7.928635393 8.709584228 8.581832368 8.157303532 8.501778974 8.489166926 8.221068502 82722311 CopA Metal Resistance Copper Shewanella sp. W3-18-1 9.226502443 9.246961014 9.521652554 9.349630936 9.214515155 8.930145368 9.204159951 9.461396555 9.008430117 9.348814294 9.310207822 9.27057141 62390048 Catechol Organic Remediation Aromatics Other aromatics Corynebacterium glutamicum ATCC 13032 8.987304704 8.465102067 8.728427421 8.010802532 8.041256069 8.192873161 8.611096727 7.896763344 8.473802663 8.126577598 8.025445143 8.182852971 88814683 ppx Phosphorus Phosphorus utilization marine actinobacterium PHSC20C1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 8.360032493 8.132998015 7.189541491 7.501954395 7.1921217 6.995733211 7.567041022 33243305 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.181882646 8.415220333 8.235811121 7.758920847 8.286058143 8.21516444 8.158406022 8.50374112 8.209125935 8.237550718 8.351956203 225047597 sigma_24 Stress Sigma factors Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 9.189833097 9.149112366 9.436561201 8.591706933 8.19086044 8.591734399 8.500366417 8.350025277 8.309686249 9.007749018 8.4543793 8.737523482 120588040 pimF Organic Remediation Aromatics Aromatic carboxylic acid Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 8.883630412 8.933986858 8.824737533 8.545837204 8.506865165 8.418619561 8.607434842 8.43497187 8.391569024 8.43196207 8.378591334 8.547952321 163737207 CadA Metal Resistance Cadmium Phaeobacter gallaeciensis BS107 8.841869409 8.897685574 7.986982075 8.033061056 7.942785787 8.032353068 7.526443449 8.028426154 7.828918333 7.817940019 8.062943725 260463469 hrcA Stress Heat shock Mesorhizobium opportunistum WSM2075 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 9.508206606 9.45088379 9.175106027 7.828501197 8.084848343 8.70697639 8.978350385 8.435915696 8.659588754 8.495286919 8.61348871 8.886650339 55772799 sox Sulphur Sulphur oxidation Thermus thermophilus HB8 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 8.826162032 8.740790707 9.008084372 8.218360385 7.719320893 8.031699856 7.954085153 7.654449062 7.691802517 7.655578691 8.086043883 126668155 AceB Carbon cycling Carbon degradation others Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 8.33360403 8.064517204 7.918469145 7.783768205 7.524978808 7.664525438 7.531315252 8.100642163 7.757106396 7.413361974 7.945153288 255050002 iro virulence Neisseria sicca ATCC 29256 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria sicca; 8.908239028 8.725426465 8.541997101 8.332694303 8.492687219 8.546775369 8.386619097 8.263520737 8.496692051 8.348018793 8.415209093 8.415796946 87331960 arhA Organic Remediation Aromatics Heterocyclic aromatics uncultured bacterium 9.298440057 9.344698065 9.500147084 8.69165962 8.33939993 8.68730311 8.584928182 8.352532029 8.571509744 8.502052162 8.589435367 8.924589806 179346927 nhh Organic Remediation Aromatics Nitoaromatics Methylobacterium populi BJ001 9.016043743 9.048781655 9.00350935 8.552624713 8.733390619 8.292352079 8.362542358 8.950918167 8.487097458 8.955399996 9.038562881 9.163149902 240295992 cap virulence capsule Actinobacillus minor NM305 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus minor; 8.725527913 8.353856417 8.499342748 8.141693633 8.016706213 7.794913724 7.572318598 7.544464316 8.043571373 7.80541018 7.566056422 8.00529882 145214770 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.611145027 9.383369906 9.03791071 8.382546033 9.240889292 9.452237669 8.927524701 9.584826432 8.910819769 8.923906941 9.223794674 161380716 ppx Phosphorus Phosphorus utilization Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 9.291101574 9.051173105 9.40971266 8.84702998 8.820035031 8.652350042 8.723711361 8.784344623 8.846889434 8.902558526 8.927054999 8.919895282 229818340 amyA Carbon cycling Carbon degradation Starch Bifidobacterium angulatum DSM 20098 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium angulatum; 9.985500034 9.904929214 9.705418118 9.473794766 9.141634457 8.814466562 9.370962831 9.470944403 9.59954141 9.653666679 9.696488637 88865736 oxyR Stress Oxygen stress Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 8.868270258 8.725563607 8.64826797 8.321001483 8.062301596 8.138787763 7.776420192 7.963786705 7.789741056 7.935514501 8.207040302 116693756 SMR_antibiotics Antibiotic resistance transporter Burkholderia cenocepacia HI2424 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 8.284480956 8.315913988 8.267323657 7.758014997 7.527905857 7.653105676 7.721486869 7.595013603 7.782384963 7.507498366 7.991802682 58040277 cap virulence capsule Gluconobacter oxydans 621H superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter oxydans; 10.02747148 9.684697592 9.902201216 9.831680207 9.978963772 9.723432568 9.610602388 10.04347391 9.668586864 9.775730123 9.833251596 10.05842547 86740858 phn Organic Remediation Herbicides related compound Frankia sp. CcI3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.392403681 8.751640001 8.690074075 8.021810882 8.085649194 8.342034111 8.839230061 8.458210217 8.908105305 8.435378875 8.205705729 8.178800335 187603405 gyrB other category gyrB Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 8.586345007 8.483117969 8.172184062 8.536428882 8.39752531 8.091348839 8.466362036 8.276234316 8.529992264 8.936181119 8.644121518 121552986 vanA Carbon cycling Carbon degradation Others Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 8.492503915 8.631380441 8.581808729 8.676969559 8.798853563 8.811345828 8.400049988 8.96055643 8.758175465 8.859440337 8.972682368 9.020827241 207744735 endoglucanase Carbon cycling Carbon degradation Cellulose Ralstonia solanacearum IPO1609 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 9.096159725 8.434890263 8.845334243 8.831162518 8.331511315 8.093971663 8.342803507 8.406586239 8.642283357 8.351663943 8.501846275 8.322182556 109641914 ppx Phosphorus Phosphorus utilization Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 8.4379705 8.415930903 8.036367028 8.036393349 7.950720545 8.224042945 8.221106611 8.218305636 8.322402105 8.140311138 113529862 pcpA Organic Remediation Aromatics Chlorinated aromatics Ralstonia eutropha H16 8.208401449 7.981649245 8.677166537 7.993787623 7.907666754 7.642842295 7.428779471 7.835690823 8.053433573 7.731242808 7.533238924 7.697978875 88783801 Arylest Organic Remediation Aromatics Other aromatics Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 8.461994291 8.063188206 8.416317979 7.80321518 7.645946371 7.639167241 7.277302241 7.761592548 7.759659797 8.083656408 7.518408457 7.834914416 90419255 CadA Metal Resistance Cadmium Aurantimonas sp. SI85-9A1 8.778409357 8.207408201 8.100382679 8.364865736 8.21529514 8.366537855 8.119164058 8.378295938 8.246195832 8.331899486 8.398892939 8.021444957 119816795 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.317740507 8.299787239 8.118354888 8.295794849 8.285498875 8.258558669 7.457062112 8.119482514 7.848320852 8.097260518 8.069298727 8.153984422 158110985 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.457738372 8.215370824 8.327228318 7.646764668 7.775648727 7.815356686 7.858955037 7.680777443 7.869837174 7.711206376 8.039514978 7.64385224 75992428 akbD Organic Remediation Aromatics BTEX and related aromatics Terrabacter sp. DBF63 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Terrabacter; 8.596658394 8.77072383 8.772987702 8.267436281 8.322913291 8.370979648 8.578927897 8.280533532 8.298232893 8.271370933 8.444922827 8.405179716 188029074 inv virulence invasion Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 8.149910408 8.641437839 8.629230928 8.563034501 8.776012884 8.576933197 8.267478533 9.100469451 8.521786216 8.986388816 9.043921716 8.759007458 156534622 merP Metal Resistance Mercury Enterobacter sakazakii ATCC BAA-894 8.703562721 8.606109868 8.714418237 7.827596441 8.385274146 8.261041382 7.806685003 8.913607117 8.017248891 8.173185224 7.94291311 218519520 metC Metal Resistance Mercury Acidithiobacillus ferrooxidans ATCC 23270 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 8.650613008 8.617432365 9.002555268 8.188522752 8.2689494 8.157976585 7.946088863 8.258013513 8.129326373 8.317292894 8.157861605 8.423121036 256544391 srt virulence surface protein Anaerococcus vaginalis ATCC 51170 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Anaerococcus;species:Anaerococcus vaginalis; 6.868287359 6.817472803 227275707 pstC Stress Phosphate limitation Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 8.491200094 8.6160463 8.22905957 8.089316236 7.452378623 7.756090493 8.041337959 7.944651033 7.815984643 7.783681117 193089985 BpH Organic Remediation Aromatics Aromatic carboxylic acid Cochliobolus lunatus superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Cochliobolus; 8.676092082 8.717057545 8.508962395 8.513822628 8.485588623 8.316003903 8.332995592 8.750483541 8.775499007 8.602934369 8.570867486 8.616330625 177840701 grpE Stress Heat shock Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 8.289034223 8.321582948 8.370173873 8.334158722 8.249294295 8.217706219 7.975299919 8.352094367 8.305170381 8.166040869 8.066376021 7.80946273 258531871 hly virulence hemolysin Pantoea sp. At-9b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 9.336436028 9.543485587 9.233197988 8.768862761 8.866632018 8.954125535 8.790220092 9.092682254 8.726040364 9.180835371 9.227258157 9.146152474 148261202 glycosyl_transferase_EPS Bioleaching EPS Acidiphilium cryptum JF-5 8.278664867 8.1503081 8.09448316 7.383965799 7.665088832 7.845066054 7.598958185 7.46758128 7.56257389 89274946 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. R04 8.784151051 8.520769325 8.608763626 8.157787646 8.073181605 8.081223456 7.89791841 7.512076476 8.316335001 7.911072205 7.891980221 8.107393143 118660447 CopA Metal Resistance Copper Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 8.510493446 8.793809921 8.777963964 8.734221704 8.607396702 8.30588385 8.749023267 9.305956726 8.718196979 9.120891564 8.746800579 8.832606915 13421694 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 8.858406549 8.615848071 8.852362327 8.608649471 8.601864289 8.639938023 8.303542613 8.473617328 8.620661045 8.348433549 8.662840473 8.587029638 186472216 MFS_antibiotic Antibiotic resistance transporter Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 9.596809044 9.798211952 9.699350824 10.35633869 10.5277235 10.32194433 9.601461738 10.49504414 9.535373509 10.14130213 10.10409261 10.35576432 219540832 dmsA Organic Remediation Others Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 8.63267532 8.907180362 8.857458811 8.15651799 9.001983841 8.868538857 9.024193133 8.802803566 8.919666809 8.808581008 8.552673962 121999080 sigma_32 Stress Sigma factors Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 8.6508479 8.844539008 8.568911988 8.200908586 8.222243481 8.080241327 8.205413512 8.433330752 8.380586495 8.618657711 8.401388318 8.554264593 259168809 SMR_antibiotics Antibiotic resistance transporter Lactobacillus antri DSM 16041 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus antri; 9.639000412 9.70160332 9.742995461 9.05808557 8.540667801 8.962607104 8.738960206 8.696573123 8.768605296 8.786935851 8.813202874 9.17391246 167586416 ChrA Metal Resistance Chromium Burkholderia ubonensis Bu superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ubonensis; 8.255097207 8.359916015 7.781354824 7.992651191 8.024280813 7.683549748 8.014283954 8.008758913 7.906755521 8.022570043 7.853007202 219996663 dsrA Sulphur sulfite reductase Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 8.318771288 8.431465707 8.540579786 8.471544405 8.643654543 8.492971627 8.571118891 8.927655298 8.609685002 9.064728852 8.750684319 8.850976647 121534199 sigma_70 Stress Sigma factors Thermosinus carboxydivorans Nor1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Thermosinus;species:Thermosinus carboxydivorans; 8.252528561 8.083377999 8.085851173 7.996842538 7.92000935 7.489212482 7.863083219 7.792630209 7.677624874 7.799557285 7.652323984 24375962 cytochrome Energy process Energy process Shewanella oneidensis MR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella oneidensis; 8.772989185 8.843413316 7.990645622 8.305171204 8.665984011 9.15526409 8.12675486 9.084908945 8.591299447 8.593521191 8.675359995 83634760 narH Stress Oxygen limitation Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 9.225717473 8.949143075 9.19305141 8.724232974 9.187939872 9.091050526 9.135146943 9.162491161 9.545680335 9.155902555 9.362629322 9.264152665 9629549 lysin Bacteria phage LYSIS Streptococcus phage Cp-1 order:Caudovirales;family:Podoviridae; 8.723590031 8.624133268 8.843960772 7.958947178 8.158704153 8.053822491 8.136125037 7.660533154 8.146888814 7.968873108 7.877076589 8.188000697 91683137 pcc Carbon cycling Carbon fixation Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.746989615 8.56174209 8.661690845 8.367315241 8.313040422 8.588487707 8.739573929 8.280117271 8.418821259 8.465808484 8.015230732 90093298 mdlB Organic Remediation Aromatics Aromatic carboxylic acid Arabidopsis thaliana superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Streptophyta;order:Brassicales;family:Brassicaceae;genus:Arabidopsis; 8.209347188 8.480103844 7.64539232 7.705031056 7.648730037 7.255028869 7.212086189 7.703932767 28872375 katE Stress Oxygen stress Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 8.433447725 8.270465899 8.266317008 8.242963449 7.977254015 7.844646868 7.944722696 8.242474143 8.148009406 8.137104495 8.123140858 8.336948348 197104918 CusF Metal Resistance Copper Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 9.446886277 9.37636375 9.440048695 8.864775269 9.006609664 8.958475435 9.050432887 8.477661049 9.151245626 8.997487891 9.024088203 8.817853379 84503126 katE Stress Oxygen stress Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 9.430451312 9.318674076 9.275635258 9.120655222 9.135767601 8.933809124 8.977987021 9.354009367 8.88380941 9.073660892 9.015169489 9.129588486 229749243 endochitinase Carbon cycling Carbon degradation Chitin Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 9.173599941 8.770301338 8.375875527 8.059548482 7.77493405 8.380628676 8.062577103 8.305841757 8.11637636 8.352469456 7.874405346 39578107 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.067133115 8.050683666 7.276092306 7.432764571 7.634166025 7.073770916 7.162138587 7.857245533 7.451333208 6.979329641 162281104 phn Organic Remediation Herbicides related compound Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 9.152723799 9.37246737 9.517990095 8.642233214 8.530578834 8.295288122 8.504716562 8.529374648 8.234170621 8.335259402 8.421786596 8.737240142 15645942 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Helicobacter pylori 26695 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter pylori; 8.589699162 8.685967289 8.478707419 8.318746554 8.254082268 8.309757256 8.312421618 8.226611788 8.567010286 7.957627975 8.036125844 8.272288553 149204369 hrcA Stress Heat shock Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.768743517 8.428007254 8.881350158 8.378111294 8.297048527 8.146796432 8.040715253 8.072209329 8.431399875 8.120569268 7.998853885 8.192146694 241667311 endochitinase Carbon cycling Carbon degradation Chitin Francisella philomiragia subsp. philomiragia ATCC 25015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Francisellaceae;genus:Francisella;species:Francisella philomiragia; 8.674460781 8.580957785 9.048198561 8.219346706 8.010807068 7.820919179 7.805992652 7.733299145 8.037791668 118731256 bclA Organic Remediation Aromatics Aromatic carboxylic acid Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.132396326 8.032957195 8.337612986 8.003681325 7.655204494 8.378690935 8.201369719 8.252633305 8.156055118 8.223375833 7.945123046 7578780 merB Metal Resistance Mercury Streptomyces sp. CHR28 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.789150374 8.669062805 8.638027438 8.625438707 8.658532069 8.712137146 8.607578404 9.00088219 8.60694785 8.842417703 8.856555681 8.853725154 226286659 grpE Stress Heat shock Paracoccidioides brasiliensis Pb18 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides;species:Paracoccidioides brasiliensis; 8.499077965 8.560832375 8.188665332 8.472179394 8.548638365 8.117123617 8.793323232 8.37484298 8.581046628 8.598758771 8.663063191 29160339 exoglucanase Carbon cycling Carbon degradation Cellulose Botryosphaeria rhodina superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Botryosphaeriales;family:Botryosphaeriaceae;genus:Botryosphaeria; 9.602148666 9.735658193 9.704902596 8.719148646 8.969981242 9.363175245 9.849423772 9.270266119 9.889863653 9.026229114 8.715160789 9.270812169 148654633 CadA Metal Resistance Cadmium Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 8.905446288 8.863484833 8.858188272 8.87895621 8.728760794 8.65064824 8.838699656 8.882463818 9.005206862 207743210 pcaG Organic Remediation Aromatics Other aromatics Ralstonia solanacearum IPO1609 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 8.272945785 8.116187792 8.189035116 7.532374277 7.942039733 7.977186449 8.029205372 7.067561922 8.147285127 7.362728815 7.765098575 7.40792154 60858837 TerZ Metal Resistance Tellurium Streptomyces noursei ATCC 11455 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces noursei; 8.693763979 8.424336601 8.431378857 8.313420906 8.312338627 8.658524164 8.114727913 8.711183586 8.168525607 8.305901892 8.694117824 8.331011643 146303307 ferredoxin_oxidoreductase Bioleaching Electron transport Metallosphaera sedula DSM 5348 9.113936368 9.069428945 9.109838107 8.484422723 8.305194016 8.428459987 8.005253194 7.65914502 8.787979505 8.0197835 7.852239815 8.272736133 158509749 tutFDG Organic Remediation Aromatics BTEX and related aromatics Candidatus Desulfococcus oleovorans Hxd3 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus;species:Desulfococcus oleovorans; 9.26585793 9.18562872 9.319076964 8.789636511 8.665169525 8.523486391 8.713875756 8.528883549 8.842997212 8.592231664 8.470379044 8.756751292 145252438 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8.630224373 8.839549045 8.92787427 8.43906524 7.832724841 8.109649881 8.035002476 7.836355686 7.996539997 8.116995774 153011541 MFS_antibiotic Antibiotic resistance transporter Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 9.926855827 10.20076673 9.771492013 10.0211488 10.15573062 10.66580741 10.48553977 10.04120298 10.38935882 10.44373404 10.34858941 104781490 iro virulence Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 8.185122288 8.066191743 7.82110512 8.026173188 7.96618886 7.857935791 7.835451198 7.870283519 8.055496634 192285270 nhh Organic Remediation Aromatics Nitoaromatics Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.644792268 8.607993533 8.519676069 8.778837508 8.426959053 8.846281746 8.301682482 8.678375864 8.461862815 8.383376624 8.620744015 8.647854555 190892485 Tet Antibiotic resistance other Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.46374494 8.470822707 8.195701704 8.431444911 8.307802426 7.881618943 8.157803773 7.945319843 8.29263011 7.982485567 8.000830568 7.666088011 262208272 sigma_24 Stress Sigma factors Comamonas testosteroni CNB-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.343402971 8.378498675 8.565757901 8.03586953 7.973896411 7.974671792 8.327733404 7.876164635 8.57133385 7.71831402 7.61009926 7.997449791 126436659 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.822939549 8.714453829 8.715993941 8.780221557 8.5584327 8.638651197 8.974612616 8.886535429 8.850379692 8.693552736 8.63524084 31747708 nif_II Bioleaching Nitrogen Leptospirillum ferrooxidans 8.409361748 8.536218302 8.736144714 8.611242628 8.466956571 8.379353401 8.686102326 8.697545016 8.668606505 8.458328326 8.258085795 8.421544332 209500157 ArsC Metal Resistance Arsenic Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.104123092 8.065366801 8.185098823 7.833099131 7.814700349 7.919975292 7.857785742 8.181625162 8.303131163 7.974113522 7.897084393 256362990 pstC Stress Phosphate limitation Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 8.574247591 8.693144115 8.638137094 7.976442447 7.924155077 8.401982647 8.490316595 8.118817015 8.157677985 8.039267382 8.243840631 183580411 NiR Nitrogen Assimilatory N reduction Kocuria rhizophila DC2201 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 9.171340784 9.180908143 8.78570706 8.264755364 8.225068729 8.358404062 8.306671946 8.361627971 8.31786412 8.243244449 8.357421362 8.32322839 227823684 obgE Stress Radiation stress Rhizobium sp. NGR234 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 8.814330357 8.330661832 8.480078179 8.563443998 8.629892298 8.395209979 8.360467833 8.637474667 8.42754262 8.598368248 8.615225268 8.267734701 118758731 cmtAb Organic Remediation Aromatics Other aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.550414525 8.573915509 8.343052858 8.469948526 8.620166076 8.340048809 8.599714765 8.888963806 8.751220619 8.75966872 8.418500796 8.563127697 156600794 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.37651723 8.276423417 8.284658371 7.830531375 7.514824265 7.680466534 7.486135517 7.273590084 7.955184162 7.623432284 7.303594585 7.709435133 168996703 srt virulence surface protein Streptococcus pneumoniae Hungary19A-6 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus pneumoniae; 8.534113716 8.664011673 8.663320707 8.23556228 7.972168321 8.060010824 7.919770918 7.826353688 8.051800483 7.838302427 7.974469686 8.304676638 115253426 pcpE Organic Remediation Herbicides related compound Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.765009855 8.972430686 8.859065927 8.363785818 8.604239562 8.56503115 8.875020526 8.434616182 8.852261684 8.490019375 8.62821395 8.704205696 14523728 fnr Stress Oxygen stress Sinorhizobium meliloti 1021 8.499632533 8.682943558 8.435397658 8.204154806 8.215791022 8.648663478 8.759472398 8.539500607 8.613905611 8.581332732 8.54931483 8.797270154 89054645 pimF Organic Remediation Aromatics Aromatic carboxylic acid Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 8.134875831 8.457456753 8.354504263 8.241152915 8.107923347 8.307496417 8.446396512 8.360015757 7.978258945 134291724 fnr Stress Oxygen stress Burkholderia vietnamiensis G4 8.496163289 8.454662732 8.638707095 8.164253706 8.308084398 8.519349152 8.89505431 8.013563302 9.09072586 7.964053838 8.222590384 8.291202409 91799449 iro virulence Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 7.501564333 7.703557182 7.83949829 7.838579145 7.658364504 7.544252656 7.90463869 7.624337521 218750928 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.807006397 8.356057666 8.180432795 8.275420904 8.351467037 8.245600339 8.462001176 8.303257074 8.329064785 8.618100104 8.261842203 109452441 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.626833806 8.682909203 8.978485853 8.282216719 8.17201891 8.302109802 8.426168822 8.160473676 8.670620845 7.955657874 8.131985418 8.426352306 85672433 nifH Nitrogen Nitrogen fixation Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.917085738 9.003835176 8.883794535 8.69038641 8.784400563 8.807643796 9.17363919 9.071895452 9.163731988 8.839853108 8.702500587 8.899284527 94424450 proO Organic Remediation Aromatics Other aromatics Sphingomonas sp. SKA58 8.392868699 8.506355991 8.513303055 7.455512954 7.624511845 7.822424023 8.444521817 7.39466205 8.288698279 7.738217707 7.475095685 7.796121079 189426480 silC Metal Resistance Silver Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 8.745275176 8.629443727 8.771984363 8.579084504 8.514702159 8.314400569 8.204791651 8.35755705 8.66152032 8.449004527 8.430546462 8.397154487 157804760 APS_AprA Sulphur adenylylsulfate reductase Thiobacillus plumbophilus superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 8.15982432 8.193948025 7.871475826 7.776243575 7.540383455 7.706335581 7.462929785 7.834501585 7.635221186 7.552085058 7.401804475 148260842 pcaG Organic Remediation Aromatics Other aromatics Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 8.504234252 8.584394069 8.229330426 8.164467367 8.025937026 7.940197673 8.141075409 8.003607915 8.208752953 7.885850865 8.181441054 255297983 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium tuberculostearicum; 8.206378035 7.970797989 7.537814005 7.463156833 7.687992571 7.1021042 7.268405845 7.751927767 7.357210441 7.239711859 7.207397508 218667581 sigma_38 Stress Sigma factors Acidithiobacillus ferrooxidans ATCC 23270 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 8.779697583 8.798675965 8.991394258 8.473743861 8.382120829 8.429625823 8.291107561 7.969475809 8.523678704 8.24650304 8.257993519 8.521293899 146342608 chnB Organic Remediation Other Hydrocarbons Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 10.17636919 10.11155785 9.896807354 9.205704726 9.263893793 9.052672848 9.727050246 9.198857328 9.908154978 9.244936795 9.238891483 9.342353139 229326948 cda Carbon cycling Carbon degradation Starch Bacillus coagulans 36D1 9.54135833 9.189547877 9.249889369 8.13936628 8.032375018 8.011009916 7.749245705 8.087946545 7.790357359 7.961365454 8.280950192 225194049 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 10.15314205 8.800255399 8.8406173 9.254961587 8.853423363 8.427380692 8.789275298 8.401434926 146401890 capsular_polysaccharide_biosynthesis_protein_EPS Bioleaching EPS Acidiphilium cryptum JF-5 8.893650705 8.815994239 8.885981952 8.048919314 8.235067677 8.464705889 8.564744471 8.178996799 8.232324719 8.045688613 8.334946297 154160111 fnr Stress Oxygen stress Xanthobacter autotrophicus Py2 9.370379181 9.04481105 9.369905052 8.590431984 8.525781909 8.450586574 8.569092338 8.475488158 8.762019095 8.518119166 8.315077614 8.714993501 15791027 ZntA Metal Resistance Zinc Halobacterium sp. NRC-1 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halobacterium;species:Halobacterium salinarum; 8.754553131 9.207081249 8.61079401 7.9182201 8.761066284 8.878584823 9.082144901 8.639205806 9.427225784 8.353947362 8.234422983 8.307619459 27378057 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.59483005 7.892601557 6.840625268 7.391822004 7.434517749 7.839722039 7.368585389 89099464 SMR_antibiotics Antibiotic resistance transporter Bacillus sp. NRRL B-14911 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 8.179893345 8.288878463 8.15347706 7.926665934 7.868749554 7.873100486 7.470830607 7.917034543 7.926444301 7.693954271 7.776873555 7.806582451 257169861 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Halomicrobium mukohataei DSM 12286 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halomicrobium;species:Halomicrobium mukohataei; 8.789228563 8.714980657 8.640495329 7.932216045 8.637330886 8.260895806 8.72468639 8.250427822 8.891040675 8.563449222 8.797071632 209514907 bphA Organic Remediation Aromatics Polycyclic aromatics Burkholderia sp. H160 9.536147771 9.088355992 9.010369089 8.575694668 8.251945938 8.378987317 8.170616894 8.271159812 7.973963415 8.191021698 8.301223095 8.415910443 203366799 carA Organic Remediation Aromatics Heterocyclic aromatics Sphingomonas sp. JS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.121396245 8.198397003 8.102820204 7.925801698 8.234985422 7.605315507 7.766685805 8.027163437 8.0803586 7.498201085 7.466271481 7.538024903 119958358 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 9.335259069 9.246557079 9.435280725 9.06231095 8.925584187 8.623792108 8.676063507 9.215544212 8.888954557 8.954701753 8.839185623 9.055660394 111018877 BADH Organic Remediation Aromatics Other aromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.637566347 8.796205007 8.565655741 8.172876598 8.72647331 8.822539248 8.934323209 7.582292808 8.878246565 8.214768323 8.357348257 8.249834838 255004170 sigma_70 Stress Sigma factors Anaplasma marginale str. Virginia superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales;family:Anaplasmataceae;genus:Anaplasma;species:Anaplasma marginale; 8.056576476 8.322929723 7.401497951 7.34999241 7.494285425 6.979987738 6.692324939 7.569551634 7.123435414 7.197378142 7.533685832 197089628 hly virulence hemolysin Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 8.613277427 8.269990193 8.735130251 7.842296312 7.838952413 7.835962057 7.665158683 7.626945024 7.867611474 7.542204764 7.645163992 7.919060971 115376797 xylG Organic Remediation Aromatics Aromatic carboxylic acid Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 8.765151608 8.662452774 8.953364235 8.424173677 8.260773981 8.072322551 8.119505529 8.140272804 8.257925385 8.176876046 8.178165358 8.393164994 28270519 ppk Phosphorus Phosphorus utilization Lactobacillus plantarum WCFS1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus plantarum; 9.369605182 9.619519168 9.472002954 8.479432313 9.359107018 9.589841627 9.252632809 9.311026426 9.179460051 9.405552156 9.448532287 149783415 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.277140323 7.947960027 8.164406978 7.289376531 7.38004586 7.692197088 7.333665416 6.963013208 8.039414707 7.316858654 7.155033919 7.303875946 83643639 pstA Stress Phosphate limitation Hahella chejuensis KCTC 2396 9.429192897 9.471659735 9.702230189 8.640957866 8.41870511 8.904862885 8.784942829 8.724654386 8.848788591 8.852023673 9.089237779 21242039 ara Carbon cycling Carbon degradation Hemicellulose Xanthomonas axonopodis pv. citri str. 306 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas axonopodis; 7.536119241 7.724086837 7.572812816 7.535317797 7.433330916 7.785455781 7.620790921 7.565793815 3820516 phdJ Organic Remediation Aromatics Polycyclic aromatics Burkholderia sp. RP007 7.532904148 7.456728409 7.702316155 7.524520488 224942311 narJ Stress Oxygen limitation Eikenella corrodens ATCC 23834 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Eikenella;species:Eikenella corrodens; 8.462269586 8.4860986 8.863241748 8.72192732 8.970169216 8.747178577 8.993053894 9.381072657 8.634141195 8.907831781 8.776821307 8.769792525 84787876 chnB Organic Remediation Other Hydrocarbons Erythrobacter litoralis HTCC2594 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 8.603685371 8.592379007 8.089513958 7.722347764 7.690044001 7.59571946 7.571847524 116634785 narG Nitrogen Denitrification uncultured bacterium 8.81927773 8.50795073 8.776338719 8.007854142 8.160738677 8.242262451 8.274425997 8.041079102 8.5738281 8.197190279 8.324764294 8.134148671 209401772 narG Nitrogen Denitrification uncultured bacterium 8.967194458 8.792158681 8.564247963 9.13554636 9.072785472 9.148827743 8.570476931 9.061172915 8.763011373 8.786428991 9.110643071 8.608967941 219947563 fnr Stress Oxygen stress Methylobacterium nodulans ORS 2060 8.618713482 8.189585185 8.476243891 8.162894977 8.151444249 7.819572479 7.888415505 8.62686107 8.168482415 8.419525633 8.229503803 8.291563329 19070147 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.42696206 8.825312058 8.881327241 8.083098179 8.112785914 7.991284752 7.670793488 7.698397644 8.39928415 7.884905967 7.637169843 8.04765477 118019751 bphF1 Organic Remediation Aromatics Polycyclic aromatics Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 8.925529541 8.772028626 8.885696675 8.502413556 8.498873042 8.63915969 8.223465377 8.429055779 8.341460611 8.184153427 8.535558228 8.689187307 167350738 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 9.497087025 8.942174724 8.44444342 9.513897012 9.465061382 9.576617139 8.919233321 9.608088845 8.943889457 9.278851813 9.541213104 8.97464548 254467358 pstB Stress Phosphate limitation Rhodobacterales bacterium Y4I 8.469740466 8.339085949 8.517814602 8.385786272 8.386165883 8.161105949 7.782632903 8.344557614 8.279435304 8.156892511 8.219421425 8.444510677 94986175 dnaK Stress Heat shock Deinococcus geothermalis DSM 11300 8.221019569 8.339550069 8.440336169 8.284971078 8.333999129 8.163640204 8.172826877 8.609857541 8.34852981 8.523280224 8.473727943 8.245849827 46308014 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.643693585 8.566398836 8.543251682 9.006792499 9.028042293 9.266032184 8.904679972 9.333275973 8.867963078 9.418516196 9.356581054 8.778153127 33574493 ureC Nitrogen Ammonification Bordetella parapertussis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 7.659237711 7.725478402 7.547998683 7.644280782 7.760561437 8.171775225 7.707277443 7.728764786 7.810267311 46519955 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.196623481 7.915096825 7.832807441 7.749300613 7.915967498 7.250043074 7.707975601 7.770306483 7.565936291 7.674952321 7.564703931 119696187 sigma_24 Stress Sigma factors Mycobacterium sp. KMS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.437790992 8.512212815 8.27357399 8.27263961 8.119056695 8.910244926 8.209693096 8.683074585 8.11977889 8.073188208 8.163957031 116609951 pcc Carbon cycling Carbon fixation Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 9.273197355 9.287530949 9.197343731 8.513752042 8.622644762 8.550345702 8.708378557 8.691174803 8.677999793 8.816873576 8.829814092 8.464582067 169807159 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 7.944694444 8.282217486 7.721276081 7.838397076 8.156362343 8.489165616 7.83311489 8.286705056 7.465816749 7.799951728 7.762557744 85713650 phoB Stress Phosphate limitation Nitrobacter sp. Nb-311A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter; 9.640901514 9.482372026 9.349008464 8.870499245 8.795007711 8.838040293 9.2544388 8.634713806 9.145427246 8.749520451 8.892979086 8.931880039 84663555 dsrB Sulphur sulfite reductase sulfate-reducing bacterium AR1104 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 8.465126576 8.330173172 8.509378196 7.98119033 8.106034832 8.385803333 8.082285728 8.206699635 8.397028115 7.883110604 8.420353451 8.068002435 254819500 pstB Stress Phosphate limitation Mycobacterium intracellulare ATCC 13950 9.647147069 9.553926458 9.549642109 8.962324778 8.997976563 9.158076944 9.245451518 8.884838664 9.219416003 9.06423672 9.029228951 9.34757219 238927759 sigma_70 Stress Sigma factors Selenomonas flueggei ATCC 43531 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas flueggei; 9.549414764 8.996594906 8.73862686 9.459809158 9.455547638 9.527053818 8.926527301 9.582929008 9.093742966 9.662054797 10.0334759 9.07505056 223585862 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.051079919 8.45602839 7.594145473 7.73977767 8.629737911 8.856252659 8.329554905 8.763410877 8.380069593 8.211601325 8.540175125 39936527 alkK Organic Remediation Others Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.051230879 7.910100152 7.688953366 7.670636374 7.546037365 7.47322932 7.476201362 7.989748472 7.815059714 7.709948352 7.648819744 254436093 ureC Nitrogen Ammonification Nitrosococcus oceani AFC27 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 8.790869307 8.57609647 8.847536195 8.279987124 8.173367745 8.313564579 8.279959487 8.141577488 8.107814443 8.071622295 8.100951009 8.181620304 90413815 catB Organic Remediation Aromatics BTEX and related aromatics Photobacterium profundum 3TCK superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 8.567775799 8.449976574 8.602700668 7.996865326 8.003732727 7.856790988 7.625359744 7.497537002 7.849162132 7.61230726 7.890547795 127513677 phoB Stress Phosphate limitation Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 8.8663788 8.073065438 8.553884466 8.350666207 8.257730803 8.245706754 8.284268589 8.390397069 8.314968201 8.244033854 8.469975535 8.177914268 89054336 AceB Carbon cycling Carbon degradation others Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 7.577074821 7.859023708 7.780929669 8.073588232 7.989735876 7.631536749 7.933064195 170777827 silC Metal Resistance Silver Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 8.885647993 9.058714433 8.674026298 8.705462098 9.09965453 9.099684856 9.561593419 9.126857821 8.831778018 8.873431736 8.947406671 8.698199892 256394993 nplT Carbon cycling Carbon degradation Starch Catenulispora acidiphila DSM 44928 8.546335408 8.553563898 8.354183894 8.454798266 8.342376418 8.146043512 8.277008273 8.568712317 8.490084004 8.491827186 8.424887561 8.353700912 13872512 nicdehydr Organic Remediation Aromatics Heterocyclic aromatics Arthrobacter nicotinovorans superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8.572418759 8.533170621 7.994181988 8.760948464 8.494386661 8.786511419 7.80156898 8.845529914 7.918761815 8.347822461 8.11062567 149915408 CopA Metal Resistance Copper Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 9.893467758 10.17050518 10.13189155 9.688784615 9.699870241 9.730827672 9.925297768 9.996366674 10.02358003 10.23132513 10.25177922 10.15968473 68535634 obgE Stress Radiation stress Corynebacterium jeikeium K411 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 8.539695295 8.542628112 7.983070363 8.227178602 7.844870001 8.230286451 8.536608652 8.227534807 8.170476014 7.720177167 8.295508799 77974342 nplT Carbon cycling Carbon degradation Starch Yersinia frederiksenii ATCC 33641 8.661156194 8.614248956 8.9109969 8.585231042 7.65270423 7.371344712 7.276604691 7.315808124 7.35661555 8.078077013 267983971 nplT Carbon cycling Carbon degradation Starch Edwardsiella tarda EIB202 8.271654721 8.407159778 8.377078033 8.163355913 8.076644766 7.952009389 8.193920914 8.001296794 8.135103986 8.017015121 8.107041861 260841002 pilin virulence pilin Vibrio sp. RC341 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 9.365668695 9.510344445 9.327115511 8.818306371 9.318127194 9.425788072 9.820063783 8.254402058 9.780779306 8.721462193 8.629449886 8.918597999 239829481 Tet Antibiotic resistance other Pseudomonas sp. c164 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.526351683 8.295174847 8.514718226 7.895045931 7.733358959 7.675706021 7.392091027 7.291823053 7.863967362 7.512411792 7.6146787 7.732196732 222475963 CopA Metal Resistance Copper Halorubrum lacusprofundi ATCC 49239 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 9.265568448 9.287002286 9.344069952 8.803218421 8.714944482 8.438447706 8.499866682 8.448685857 8.4752963 8.385329537 8.868044535 219721204 iro virulence Stenotrophomonas sp. SKA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 8.795046191 8.808645612 8.927348918 8.901402494 9.019178011 8.310133547 8.414940726 8.180534429 8.531388707 8.829174135 8.650164719 118703293 nitA Organic Remediation Aromatics Other aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 10.16773935 10.2282392 9.903987912 9.898568183 9.952830799 9.963640537 10.23627136 10.24266922 10.27380039 10.04793135 10.03740947 10.20778052 83316626 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.143639299 8.73754374 9.386805275 8.823804619 9.071146938 8.950838258 8.778170857 8.981120446 8.9375738 8.86432409 9.296283565 9.025485761 218222670 sigma_24 Stress Sigma factors Parabacteroides johnsonii DSM 18315 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides johnsonii; 8.032318736 7.984116331 8.227667868 7.608680333 7.546158931 7.433954728 7.394913476 7.156246912 7.324702323 7.270860151 7.685689542 32766675 mdlB Organic Remediation Aromatics Aromatic carboxylic acid Danio rerio superkingdom:Eukaryota;kingdom:Metazoa;phylum:Chordata;class:Actinopterygii;order:Cypriniformes;family:Cyprinidae;genus:Danio; 8.450261371 8.149969778 7.985100432 7.722303841 7.609260384 7.732476718 7.892018978 7.922254095 7.665155924 7.56985506 162452723 sigma_70 Stress Sigma factors Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 9.046945384 9.175458769 9.196495112 8.978614978 8.85237306 8.454359865 8.714858937 9.063889096 9.345352769 8.837235205 8.664998444 8.934111538 13093477 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium leprae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.745966348 9.061995716 8.634277477 8.509899808 8.668348191 8.864778356 9.444896384 8.672416787 9.302982305 8.700091932 8.647620437 8.745727427 187487282 catechol_B Organic Remediation Aromatics Other aromatics Chloroflexus sp. Y-400-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus; 8.306701718 8.147084932 8.516255236 7.616241447 7.922811549 7.876213554 7.03646939 7.847289073 7.412494745 7.682907498 7.644218175 227312265 sigma_70 Stress Sigma factors Denitrovibrio acetiphilus DSM 12809 superkingdom:Bacteria;phylum:Deferribacteres;class:Deferribacteres;order:Deferribacterales;family:Deferribacteraceae;genus:Denitrovibrio;species:Denitrovibrio acetiphilus; 8.886941689 8.834947155 8.823511568 8.362702861 8.174457893 8.140777694 8.088416408 8.071808897 8.222141085 8.116362158 8.043060715 8.356734623 159179174 phn Organic Remediation Herbicides related compound alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 8.761868236 8.743547758 8.748441864 8.352772689 8.322063019 8.213070731 8.7953247 8.070720081 8.620589047 8.27989634 8.587650636 8.219318714 187725820 CopA Metal Resistance Copper Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.587199331 9.166590013 9.02794172 8.185087439 8.973528347 9.143725525 9.118167232 9.27905867 9.324147973 8.86656301 9.280762689 9.115903969 133910583 B_lactamase_A Antibiotic resistance Beta-lactamases Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 8.630908119 8.52188967 8.173684683 8.269693911 8.313500656 8.469242356 8.701578078 8.467132523 8.623825582 8.391380498 8.42179394 8.34120206 158521015 APS_AprA Sulphur adenylylsulfate reductase Desulfococcus oleovorans Hxd3 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus;species:Desulfococcus oleovorans; 8.091743138 8.344673562 8.363587326 7.771495577 7.952196565 8.08369873 7.817343145 7.891615611 8.193979425 7.80537132 7.918206839 7.759581995 147668770 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. BAV1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 8.839263829 8.929120531 8.810818092 8.257393332 8.166790335 8.304775227 7.965473451 7.626823171 8.165163478 7.945702342 7.946769329 8.270723517 157681313 alkK Organic Remediation Others Bacillus pumilus SAFR-032 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pumilus; 8.738463935 8.941591462 8.777245489 8.528849744 8.683316959 9.003625399 8.555385052 9.175350535 8.405256038 8.720241491 8.95057839 8.515391692 159140630 obgE Stress Radiation stress Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 9.147350275 8.983087955 8.976648232 9.165868662 9.093265958 8.796156221 9.151733031 9.65798501 9.306171625 9.365234138 9.116222005 9.359330288 150272478 sigma_24 Stress Sigma factors Bacteroides capillosus ATCC 29799 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides capillosus; 8.630287831 8.674025054 8.749612957 8.21991513 7.904249967 8.34420879 8.315810948 7.634607282 8.534945521 8.085932984 8.127697756 8.370517955 255919245 sigma_24 Stress Sigma factors Actinosynnema mirum DSM 43827 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinosynnemataceae;genus:Actinosynnema;species:Actinosynnema mirum; 9.319533953 9.355408275 9.392999075 8.791701593 8.69976799 8.651178535 8.339070171 8.698631724 8.543019557 8.648679847 8.551839403 8.894083035 52002049 cellobiase Carbon cycling Carbon degradation Cellulose Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 8.371378327 8.768965706 8.649453962 8.077126656 7.964074458 8.174204069 7.804161316 7.816097751 8.093543803 7.751715545 8.118139198 111151755 nmoA Organic Remediation Aromatics Nitoaromatics Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 8.971098563 8.730292088 8.693205905 8.948961148 8.891242947 8.603306242 8.981002705 9.347512891 9.109936059 8.977831091 8.807354772 8.909825719 159040177 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Salinispora arenicola CNS-205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 9.649292397 9.48110754 9.574393468 9.539388711 9.841508883 9.470965749 9.1071915 9.689662643 9.054964455 9.488334096 9.515258836 9.830930985 229240439 grpE Stress Heat shock Cellulomonas flavigena DSM 20109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 9.658463723 9.788274514 9.291691892 9.66610116 9.699277335 9.865188774 10.04637128 10.05471207 9.900348695 10.23203092 10.25477579 10.14927791 149131483 grpE Stress Heat shock Bacteroides caccae ATCC 43185 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides caccae; 8.498362142 8.714231918 8.724539604 7.891515232 8.200142984 8.449820311 9.051494103 7.583254023 9.002535732 8.188466111 7.964100672 94471207 narG Nitrogen Denitrification uncultured bacterium 8.613958543 8.726336808 8.329271144 8.513953626 8.016418607 8.536443781 8.836250581 8.435966463 8.368106206 8.299245109 8.183178307 8.021497246 118029236 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.332825821 8.384218266 8.112783259 8.419208571 8.524319977 8.380880939 8.187481954 8.773544206 8.358241919 8.389429314 8.43445311 8.411187036 154156769 alkH Organic Remediation Other Hydrocarbons Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 8.742770505 8.926288063 8.68523931 8.77384972 8.737769019 8.976658252 8.625869256 9.108521693 8.736990546 9.041764171 9.400316501 8.644125713 269836706 sigma_24 Stress Sigma factors Sphaerobacter thermophilus DSM 20745 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 9.055876989 9.100134986 8.555505406 8.466315527 8.323850047 8.714832416 9.138662249 8.775614957 8.542747415 8.450317435 8.43918936 8.52391351 151302317 APS_AprA Sulphur adenylylsulfate reductase sulfate-reducing bacterium DSM 14454 8.87431562 8.642779576 8.827753521 7.839146832 8.19176188 8.279322739 7.69083828 8.64782151 8.031191677 8.018928795 8.050811325 160917474 narG Nitrogen Denitrification uncultured bacterium 7.241572772 7.238444514 6.703045607 7.516129127 6.963341673 7.195563886 142850047 glnA Stress Nitrogen limitation Aeromonas salmonicida subsp. salmonicida A449 8.698247227 8.69532335 8.817530195 8.980498547 8.885333817 8.663235069 8.951445768 9.35846638 9.055869268 8.918201453 8.794708928 9.004221246 163758169 oxyR Stress Oxygen stress Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 8.326941217 7.840493003 7.68201109 7.67998008 8.093001201 7.852245371 7.847435283 7.959099293 7.697589754 7.820992612 7.6457511 89046624 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 9.7871687 9.591476276 9.606455391 9.229573466 9.206250479 9.088258774 9.253987634 8.802663535 9.282996627 9.061094846 9.210169342 9.231428859 222447453 pstA Stress Phosphate limitation Chloroflexus sp. Y-400-fl 8.461618744 8.215617497 8.362374578 7.552644103 7.638080425 7.575400245 7.484472987 7.073054878 7.567711417 7.483213965 7.591368085 89045831 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 8.631788585 8.70776955 8.951159154 8.330443302 8.19611183 8.156797027 8.314184467 8.15733127 8.143464806 8.082834212 8.192063424 42741697 pstB Stress Phosphate limitation Alcaligenes faecalis 8.264320631 8.128412275 8.412313242 7.646686314 7.80073208 7.785615096 7.661512615 7.479703406 7.821826763 7.982562083 7.884825169 222084213 gyrB other category gyrB Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.803597001 8.92995261 8.660565553 8.676095964 8.356719179 8.057304196 8.196495393 8.94224187 227079376 AceB Carbon cycling Carbon degradation others Corynebacterium lipophiloflavum DSM 44291 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium lipophiloflavum; 8.757531528 9.080064495 8.78932063 9.18873909 9.187122077 9.067252626 8.962099493 9.566634542 9.096935111 9.529994795 9.434379343 9.565417911 99083269 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.561821544 8.39389967 8.603620394 8.059664341 7.995458516 7.932734103 7.525930487 7.521656987 8.274361794 7.624539028 7.582022791 7.944093749 188592235 xylJ Organic Remediation Aromatics BTEX and related aromatics Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 8.781384341 9.00902565 8.80656531 8.747929351 8.766758777 8.693505026 8.752255292 9.042213675 8.989649187 9.023068783 8.960692233 8.963136727 160933123 ppx Phosphorus Phosphorus utilization Clostridium leptum DSM 753 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 8.740654256 8.805981553 8.713062756 8.733441212 8.651840242 8.388515282 8.687881905 8.71737754 8.657119338 8.522689208 8.573937057 182679468 ChrA Metal Resistance Chromium Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 7.923882702 7.874921005 7.697050692 8.004261223 7.856175453 7.933040996 7.578681224 7.74727887 84711500 ChrA Metal Resistance Chromium Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 9.409357748 9.377956354 8.864437463 9.467866606 9.326147203 9.236781262 8.977476489 9.343629678 9.858277156 9.121682129 9.304574488 8.929627721 27476015 primase Bacteria phage REPLICATION Pseudomonas phage PaP3 8.973082454 8.883690131 9.082916924 8.383509263 8.387641204 8.003827641 8.190786726 8.076503348 8.011687393 8.057424682 8.106902078 8.356048111 168702474 sigma_24 Stress Sigma factors Gemmata obscuriglobus UQM 2246 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata;species:Gemmata obscuriglobus; 8.192708596 7.877822145 7.942814251 8.222344197 8.133102015 8.385484576 8.074579509 7.989978946 7.872999081 119225912 Catechol Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 9.926607049 9.848140383 10.0929621 9.877052755 9.725387682 9.247598937 9.512104336 9.897949444 9.642903757 9.939622194 9.898071959 9.984314651 197104919 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 10.74416593 10.4492616 10.96195616 10.44488561 10.34730634 10.61020214 10.35218157 10.36441356 10.54070054 10.46323876 10.88954158 10.5164095 251755058 vip virulence virulence protein Pectobacterium carotovorum subsp. carotovorum PC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 8.642544994 8.608061395 8.641136852 7.664983537 7.9700248 8.404513851 8.688498975 7.84401198 8.377315796 7.973480432 8.243048393 7.83064219 219563162 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 8.535851149 7.915207875 8.203814948 7.582299111 7.347157104 7.22646639 7.45493261 6.952977313 7.657365862 7.58225275 7.473125122 119956209 limEH Carbon cycling Carbon degradation Others Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 9.867149781 9.883564601 9.974251913 9.785452416 9.798952552 9.599062041 9.607993657 10.0389973 9.440481911 9.87435986 9.884010612 10.18921213 90201441 ArsC Metal Resistance Arsenic Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.122884784 7.92987808 7.925260182 7.894507272 8.024666705 7.71111098 7.838307888 8.208324085 7.803144982 7.777838863 7.88133108 190012949 exaA Organic Remediation Chlorinated solvents Stenotrophomonas maltophilia K279a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 8.641694852 8.857834119 8.810024383 8.623712676 8.920806285 8.751257449 8.935529279 9.019207616 8.779055833 8.987230597 8.673426088 8.770019801 146276053 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Novosphingobium aromaticivorans DSM 12444 8.086061595 7.911236025 8.363898554 8.427584257 8.163898052 8.258360751 8.067760328 8.14040219 8.248273861 111056483 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 8.644833937 8.29652373 8.249780166 8.353415313 8.211810055 8.089124199 8.44582619 8.366624487 8.383699049 8.349758525 8.280508229 8.314789974 88607183 ahpC Stress Oxygen stress Anaplasma phagocytophilum HZ superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales;family:Anaplasmataceae;genus:Anaplasma;species:Anaplasma phagocytophilum; 7.470133476 7.474095541 7.056187424 7.150190288 7.299944617 7.536356145 7.508664298 7.334849019 40747734 pheA Organic Remediation Aromatics Other aromatics Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 8.480126426 8.852267634 8.632816137 9.106190005 9.036482736 9.091620729 9.087901832 9.081648472 8.848327318 9.18070406 9.001522575 8.522021018 217506151 pstA Stress Phosphate limitation Thauera sp. MZ1T 8.196144667 8.199929275 8.156475187 7.894215231 7.679704951 7.759589585 7.263471352 7.373593102 8.121649513 7.5236663 7.404619927 7.740021067 239927426 glnA Stress Nitrogen limitation Streptomyces ghanaensis ATCC 14672 8.757252117 8.805536009 8.443531448 8.407742527 8.386726651 7.968801355 8.237174038 7.839380914 8.473428443 8.455355084 8.701808074 254819023 glnA Stress Nitrogen limitation Mycobacterium intracellulare ATCC 13950 9.487899295 9.427866687 9.41091153 9.248135989 9.183060132 8.96792278 9.293958366 9.222228516 9.152545343 9.364802385 9.217624221 9.199105785 170141618 silC Metal Resistance Silver Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 8.348332129 8.522440958 8.151671471 8.507487202 8.313966971 8.155055351 8.380096435 8.659246536 8.603144351 8.595316234 8.672713951 8.787049189 113530267 mdlB Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 7.925119153 7.955701893 7.772781606 7.850164917 7.932281466 7.359983789 7.325712711 7.824232528 7.426074645 8.022734245 7.501128691 1769814 cellobiase Carbon cycling Carbon degradation Cellulose Bifidobacterium breve superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium; 8.094927789 8.053491753 8.147644692 8.048001849 8.132602763 8.326452783 8.315363136 8.400883631 8.534023017 8.331176506 8.388351408 8.298398058 70994244 ahpC Stress Oxygen stress Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 10.26753289 10.25230163 10.04181943 9.43662773 9.942665915 10.37474229 10.0405289 10.50544313 9.789118592 9.737930009 9.884549851 259169798 pstC Stress Phosphate limitation Lactobacillus antri DSM 16041 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus antri; 8.348584521 8.379863825 8.378263569 7.974403067 7.931678323 8.12510813 8.721612695 7.623764277 8.604007594 8.018540549 7.905607233 7.905984999 197086190 fnr Stress Oxygen stress Geobacter bemidjiensis Bem 8.046779563 8.234980084 7.637264506 7.517437414 7.588380534 7.466000345 7.280666555 7.730158758 7.23254377 7.10901727 7.290458032 162139129 obgE Stress Radiation stress Streptococcus pyogenes MGAS2096 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus pyogenes; 8.001459067 8.008382628 6.903199752 7.023129427 7.014765612 6.970364428 7.214131273 220932994 pstA Stress Phosphate limitation Halothermothrix orenii H 168 8.28229642 8.104455408 8.485525434 7.684200948 7.726856792 7.772447164 7.660872934 7.334489272 7.738580762 281417234 cap virulence capsule Clostridium thermocellum JW20 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 8.799503404 8.686497943 8.838830731 8.616638209 8.622405319 8.321926214 8.532077414 9.094259233 8.405353038 8.800077865 8.568606185 8.498502987 281327482 type_III_secretion virulence secretion Burkholderia sp. CCGE1001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 9.248018453 9.360721162 9.275534793 8.888609249 8.928720598 8.82144467 9.264025823 8.780066234 9.378911647 8.711507363 8.579843088 8.668331281 83592363 CadA Metal Resistance Cadmium Rhodospirillum rubrum ATCC 11170 8.605992696 8.569981587 8.554528396 8.761875666 8.793617093 8.404820206 8.190815514 8.889796992 8.979256728 8.87532021 145221997 TerC Metal Resistance Tellurium Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.40690507 8.788580181 8.865492017 8.062901094 7.923529254 8.167817334 7.945500391 7.649419712 7.757788982 7.864427595 8.260015138 115369727 mannanase Carbon cycling Carbon degradation Hemicellulose Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 9.802640913 9.708623062 9.679106826 8.995860115 8.644384751 8.340366119 9.099306112 8.985732573 9.085693697 8.790670693 8.899923612 9.048939041 13815295 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sulfolobus solfataricus P2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus;species:Sulfolobus solfataricus; 7.09911773 7.169266349 7.28125874 7.13390825 6.730506256 6.807124179 6.948390363 7.682667445 88698591 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Congregibacter litoralis KT71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 7.790688063 7.61775187 7.509386976 6.741100041 6.844268688 7.605239053 7.296083507 7.018679452 7.654311328 282948743 pap virulence adhesin Citrobacter rodentium ICC168 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 8.563601216 8.425011059 8.556608339 7.796295437 7.756119875 8.186082826 7.709797021 8.452017126 7.923726122 7.793534718 7.843993866 37528224 AceB Carbon cycling Carbon degradation others Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 7.137746239 7.169383519 54027706 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 8.220148584 8.406593935 8.612310352 8.007274847 7.739766531 7.824806606 7.717918362 7.669059279 7.954284144 7.575294238 7.425627657 7.987691627 91775353 sigma_24 Stress Sigma factors Methylobacillus flagellatus KT superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 7.42202225 7.252741226 7.401964958 6.922087632 6.828987577 7.677977743 7.189617196 7.442279548 222526458 phn Organic Remediation Herbicides related compound Chloroflexus sp. Y-400-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus; 8.092310831 7.760130724 8.136987559 7.714876911 7.472999596 7.412064313 7.298261818 7.608419804 8.070911782 7.766776968 7.448700204 7.759520653 60593148 dsrA Sulphur sulfite reductase uncultured prokaryote 8.166528975 8.292065453 7.893485292 8.076108598 7.884509816 7.642770667 8.361028299 7.963619303 8.253981116 8.090122411 8.085921569 118730373 ArsC Metal Resistance Arsenic Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.451864098 8.704121975 8.691904491 8.285938011 8.380916703 8.7149942 8.653882489 8.596282153 9.219106781 8.919673185 8.508503779 8.87075521 86284849 alkK Organic Remediation Others Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 9.385277503 9.501031194 9.768987259 9.216875795 9.230013802 8.900131982 9.051018707 9.526363767 9.54524946 9.500657877 9.348580177 9.542479543 152146333 mer Metal Resistance Mercury Beggiatoa sp. SS superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Beggiatoa; 9.021675651 8.904890397 9.106901222 8.585785313 8.447958657 8.386207408 8.377381114 8.053292637 8.20292113 8.218996201 8.167911977 8.602143771 167360237 pcc Carbon cycling Carbon fixation Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.316882354 8.169325294 8.333312887 8.27118126 8.064930843 7.996505762 8.441937619 8.702863107 8.392612023 8.476666003 8.60384548 229746930 pstB Stress Phosphate limitation Stackebrandtia nassauensis DSM 44728 9.630400449 9.534865668 9.496420363 9.103534357 9.082468859 9.038966379 9.278824993 9.205453897 9.098378337 9.209902566 9.2514354 9.22563758 29832347 TerD Metal Resistance Tellurium Streptomyces avermitilis MA-4680 9.163635261 8.885033349 8.906831837 8.420723255 8.374879162 8.460124214 8.340935349 8.483354016 8.366795594 8.414996356 8.476325297 8.663647313 258639044 amyA Carbon cycling Carbon degradation Starch Pantoea sp. At-9b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 8.629765891 8.480163469 8.8732243 8.313377817 8.121107769 8.091448524 8.224557451 7.85165402 7.435738874 7.987824028 7.999311539 8.347490263 151302176 AprA Sulphur adenylylsulfate reductase Desulfovibrio sulfodismutans 8.420599342 8.445115879 8.587765912 8.735212631 8.594696349 8.294555843 8.952171777 8.075491681 8.587868341 8.480558495 8.756527356 166859943 cytochrome Energy process Energy process Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.204695897 8.379747528 8.451101768 7.894125276 7.70057473 7.541919493 7.620815395 7.17338584 7.889624894 7.518821483 7.342326386 7.623929336 209501667 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.883668736 8.832150213 8.848300717 8.696073777 8.413714498 8.303956765 8.364185416 8.705215524 8.553720122 8.653588071 8.619828679 8.696448729 6048987 catechol_B Organic Remediation Aromatics Other aromatics Burkholderia sp. RP007 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.373264485 8.44550793 8.638122466 8.035340474 7.907375568 8.045760219 7.85793241 8.213685023 8.123387798 8.004099149 55230067 gyrB other category gyrB Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 7.732659083 7.603201446 7.930405582 7.979090428 8.175875831 8.120548226 8.127770701 8.046501291 7.795544918 154151622 nifH Nitrogen Nitrogen fixation Candidatus Methanoregula boonei 6A8 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;genus:Candidatus Methanoregula;species:Candidatus Methanoregula boonei; 9.721374851 9.739910495 9.68699711 8.945043258 8.981542466 9.047044692 8.963733741 9.144921495 8.833653298 9.024231935 9.2106433 9.394285388 209960494 fnr Stress Oxygen stress Rhodospirillum centenum SW 9.443996535 9.098277489 9.233661498 8.930301718 9.00856037 8.979398327 8.900324544 9.029953376 8.985318551 8.922004692 9.305607806 9.185933576 194335243 MFS_antibiotic Antibiotic resistance transporter Pelodictyon phaeoclathratiforme BU-1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 8.712104068 8.87812481 9.022960361 9.170981684 8.96208976 9.246061669 9.546456302 8.79890658 9.632392173 9.373984192 172065483 silC Metal Resistance Silver Burkholderia ambifaria MC40-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 8.51949435 8.397823944 8.422499268 8.531577554 8.296207661 8.561484621 8.121931395 8.517387158 6460677 katE Stress Oxygen stress Deinococcus radiodurans R1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 8.384167353 8.451225956 8.578780466 8.023219387 7.992685349 7.991023005 7.942504686 7.711286449 8.051701914 7.770132426 7.31648283 7.966307933 182415588 sigma_24 Stress Sigma factors Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 8.488774222 9.010449697 8.202418352 8.221633643 8.433729082 8.571951949 8.398035547 8.696061129 8.254944877 8.406661247 8.336025912 104782355 ArsC Metal Resistance Arsenic Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 9.381056282 9.212705257 9.24156051 8.927106469 8.672175626 8.729722305 8.72287507 8.772900901 8.970502929 9.180902859 9.277492906 9.246594079 269093921 narI Stress Oxygen limitation Veillonella parvula DSM 2008 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Veillonella;species:Veillonella parvula; 8.318896434 8.513305481 8.784432268 8.126592186 8.157994564 7.676998737 7.318958712 7.370829617 7.715044789 7.621753387 7.992689752 7.8978366 85712581 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Idiomarina baltica OS145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina baltica; 8.704741582 8.745184366 8.690545861 7.888968361 8.183579754 8.37256555 8.767522641 8.03767737 8.982433464 8.3163816 8.281584716 8.378593643 66801853 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 8.972792129 8.905958174 9.036144815 8.733879917 8.590897997 8.639242212 8.567992554 8.568248353 8.698001169 8.692201904 8.604266907 8.604215507 171088039 amyA Carbon cycling Carbon degradation Starch Geobacillus sp. WCH70 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.957740618 8.761203613 9.022651028 8.279745298 8.2479674 8.259092126 8.138551849 8.195267903 8.373555641 8.099781321 8.0309608 8.524708163 27376520 linC Organic Remediation Pesticides related compound Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 9.323902638 8.966658346 9.064260705 8.491481814 8.609741416 8.608205115 8.86470182 9.085298497 8.806576515 9.112573063 8.876495041 9.028787988 257478745 pcc Carbon cycling Carbon fixation Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 7.357266221 7.413618636 7.197206777 7.076839039 7.053824725 238920023 amyA Carbon cycling Carbon degradation Starch Edwardsiella ictaluri 93-146 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella ictaluri; 8.779976903 8.592379007 8.451507074 9.11182974 9.070339287 8.943584025 8.807290487 9.143563938 8.828026557 8.92506639 8.961878337 8.302894564 157075933 pulA Carbon cycling Carbon degradation Starch Streptococcus gordonii str. Challis substr. CH1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus gordonii; 7.444985499 7.080652084 7.241942715 219869487 arsM Metal Resistance Arsenic Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 9.436039511 9.377073166 9.637443164 9.099818962 8.653126239 8.570282557 8.789459318 8.788784579 8.704778593 8.893534382 134291007 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 8.855207648 8.669643111 8.634350838 8.635531816 8.754148368 8.845911519 8.468567226 8.501517051 8.782635649 8.441316858 8.662928958 8.328664325 157409956 ArsC Metal Resistance Arsenic Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 8.622025002 8.696363167 8.60425199 8.848163046 8.599792454 8.11609374 8.609714595 9.162984468 8.866428883 8.694290052 8.424658943 8.634152546 2196828 gyrB other category gyrB Shewanella algae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 8.77819651 8.405914515 8.784305966 8.338171522 8.209468647 8.26436058 7.787200721 8.225411379 8.117865645 8.249571982 8.277268967 8.505515021 123967446 xylJ Organic Remediation Aromatics BTEX and related aromatics Sphingobium yanoikuyae superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 8.47253494 8.481368728 8.166531879 8.053039921 8.165603682 8.000637782 8.073764231 8.46900099 8.015227636 8.096249954 8.278192911 89901551 sigma_38 Stress Sigma factors Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 8.468249079 8.218864227 8.386861805 7.976978018 7.957082331 7.886216695 7.553596473 8.31679168 8.471429886 8.177551198 51246442 obgE Stress Radiation stress Desulfotalea psychrophila LSv54 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfotalea;species:Desulfotalea psychrophila; 9.498153345 9.515725773 9.66801378 8.691381419 8.701888097 8.790882021 8.610524361 8.26243046 8.408485211 8.340955887 8.977429904 150377041 B_lactamase_C Antibiotic resistance Beta-lactamases Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 8.440670255 8.199944468 8.210326979 7.977155133 8.202645754 8.235626579 8.148579908 8.283855063 7.764437983 261251843 glnA Stress Nitrogen limitation Vibrio orientalis CIP 102891 8.436299326 8.065895723 8.221133815 7.896447818 8.124205154 8.020109188 8.032581481 8.013972107 7.491793252 110830314 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 9.013384121 8.786512618 8.993481732 8.26731868 8.065273774 7.991764542 8.247009356 8.190386788 8.454896487 8.199959355 7.976164515 8.261063966 170656504 ChrA Metal Resistance Chromium Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 9.600530535 9.582500799 9.641538457 8.949084376 9.006817302 8.793233635 8.87515564 9.186334136 8.963511399 9.089152952 8.980021552 9.153917588 92112811 glnA Stress Nitrogen limitation Chromohalobacter salexigens DSM 3043 8.957237336 9.018516456 9.006057546 8.208081589 8.21093318 8.25651221 7.937982993 7.902377227 7.973574853 7.904449797 8.325937341 116749778 pulA Carbon cycling Carbon degradation Starch Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 7.550115553 7.425038525 7.094705089 7.48429032 7.129907028 7.226671519 7.31976017 7.176794993 15075621 trzN Organic Remediation Herbicides related compound Sinorhizobium meliloti superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium; 9.360857813 9.395084902 9.505074063 9.690189428 9.735247007 9.469039529 9.729884446 9.689422316 9.382399615 9.743364335 9.566189652 9.141934626 170093848 phytase Phosphorus Phosphorus utilization Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 9.536013797 9.571823808 9.646654757 8.299312581 8.284202001 8.31889661 8.189566052 7.912299165 8.410157897 8.064380072 7.949313066 8.439508341 56696569 pimF Organic Remediation Aromatics Aromatic carboxylic acid Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 8.689958269 8.403699333 8.624944216 7.905848026 7.850136901 7.89076351 8.491326008 7.861830098 8.724886624 7.647867892 7.45278583 7.408420542 260646180 glnA Stress Nitrogen limitation Streptomyces scabiei 87.22 8.701969087 8.842520631 9.08686813 9.417547914 9.272964514 8.974197214 9.110484018 9.210786215 9.015616034 9.052451258 8.62123145 8.494028514 169864221 phoA Stress Phosphate limitation Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 8.591379388 8.280326936 8.429426412 8.119195067 8.229099533 7.938473177 8.677726222 8.276444423 8.687834333 8.309305634 8.550576837 7.815398051 226243898 katE Stress Oxygen stress Rhodococcus opacus B4 9.654979915 9.583140935 9.718977356 9.198321081 9.099987822 9.129357384 8.819116124 8.905927679 9.069658488 9.016253758 9.058496273 9.272091218 110827739 ara Carbon cycling Carbon degradation Hemicellulose Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 8.36607513 8.24756697 8.20654828 7.845166702 8.109194167 8.493206745 8.254718896 8.068096425 7.88787798 7.798126924 150377902 phtA Organic Remediation Aromatics Aromatic carboxylic acid Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 7.972723855 7.780125933 7.398410982 7.235179839 7.628757252 7.839085425 7.646175483 7.390699653 7.62539703 146409160 fnr Stress Oxygen stress Bradyrhizobium sp. BTAi1 8.178542743 8.902328592 8.624640495 8.875275682 8.913669348 8.498486516 8.720717183 9.278655611 8.728741847 9.104261622 8.695533804 8.706017426 209401742 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.078259597 8.866705141 8.321822826 8.71119229 8.685066353 8.63742997 8.548081248 8.763803913 8.405238984 8.845905619 8.475840658 171095740 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia ambifaria MEX-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 7.995064718 7.954967113 8.57415455 8.104753359 7.890726559 7.541905753 7.613939871 7.788181693 8.272009982 8.116191336 7.989605635 7.957429258 6324893 alkK Organic Remediation Others Saccharomyces cerevisiae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Saccharomyces; 8.376391772 8.255392949 8.241774479 8.075235288 8.015363981 4633558 nosZ Nitrogen Denitrification uncultured bacterium ProE superkingdom:Bacteria; 8.149304422 8.030779998 7.911677296 7.311212767 8.060665962 7.830133201 7.687769117 7.690728698 7.527657798 261346447 SMR_antibiotics Antibiotic resistance transporter Providencia rustigianii DSM 4541 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 8.487388274 8.289519207 8.566814291 7.984754179 7.827488051 7.86588471 7.73675108 7.384496151 8.181042653 7.46619513 7.780203889 7.955675766 118579629 nrfA Nitrogen Dissimilatory N reduction Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 8.860128244 8.85415069 9.085859612 8.6727952 8.426791015 8.333995914 8.325193656 8.431099701 8.327721565 8.463314971 8.32939145 8.568855801 258627011 pilin virulence pilin Vibrio mimicus VM603 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 7.984333669 8.349765838 7.771487687 7.9225759 8.03267724 7.417981088 7.922187986 7.874456801 8.082875441 7.854603179 212711737 dmsA Organic Remediation Others Providencia alcalifaciens DSM 30120 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 7.486989833 7.326392876 7.826995172 7.671719902 7.693249054 7.138579249 7.556427584 7.452000035 163733759 mer Metal Resistance Mercury Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 8.635022068 8.459756498 8.256119336 7.860179551 7.787675432 7.835120997 7.43553599 7.389719075 7.950909514 7.666091051 7.671383886 7.875587079 190998170 cytochrome Energy process Energy process Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 9.210120243 8.929733462 9.185768977 8.482631368 8.597947907 8.431570559 8.493186397 8.407418568 8.405007081 8.523807306 8.541427044 67084895 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 9.231253487 9.082044446 9.133562454 8.71780382 9.023049026 8.853513403 9.30345457 8.338371288 9.27597323 8.602048195 8.636732895 8.737828493 148553994 pcaG Organic Remediation Aromatics Other aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.92589689 9.065309226 9.102959632 8.463653146 8.309563257 8.434987943 8.509617658 8.489172417 8.253891413 8.393297335 8.230230476 8.585007703 46101219 tftH Organic Remediation Aromatics Chlorinated aromatics Ustilago maydis 521 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Ustilaginomycetes;order:Ustilaginales;family:Ustilaginaceae;genus:Ustilago;species:Ustilago maydis; 7.489438801 7.727410861 7.481985456 7.249645386 7.328757126 7.771169053 7.494927993 7.391975663 7.668992813 83755999 mer Metal Resistance Mercury Salinibacter ruber DSM 13855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 8.388747495 8.260646353 8.419643064 8.15009569 8.14896909 7.918894112 8.136640467 8.088572606 8.024638352 7.97648026 7.979998826 8.090948035 27377801 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 10.61330069 10.46936108 10.52003747 10.29415749 10.06720469 9.691683879 10.08828946 10.1149282 10.03109602 9.992988461 9.917178421 9.974265333 145221946 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium gilvum PYR-GCK 8.430455588 8.150493329 8.278761964 7.706718204 7.462805291 7.895476304 7.565148453 7.623263335 7.603695535 7.517240739 94422217 TehB Metal Resistance Tellurium Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.811963605 9.202369145 9.071063567 9.056117361 9.203839234 9.025487976 9.271038127 9.664764517 9.122663663 9.590670119 9.186494957 9.227444042 24984124 ChrA Metal Resistance Chromium Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.088524043 8.179208797 7.476847276 7.717125572 7.967731874 7.692345162 7.914637901 7.598545816 7.550529992 7.585249195 238886012 fnr Stress Oxygen stress Selenomonas flueggei ATCC 43531 8.212511019 8.001727109 8.18205853 8.083525184 8.119891331 7.986604032 8.189426509 8.583205774 8.036230762 7.898877854 8.218134081 85830961 clpC Stress Protein stress Leeuwenhoekiella blandensis MED217 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Leeuwenhoekiella;species:Leeuwenhoekiella blandensis; 6.941747868 7.183075488 221564361 ahpC Stress Oxygen stress Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 9.033759373 9.015910115 9.020434115 8.401014044 8.42174916 8.209212838 8.124621546 7.859157114 8.192961617 8.265610916 8.064005083 8.386667417 78695669 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 10.10362804 10.20609905 10.21456065 10.00194672 10.05535262 9.790668088 10.07616269 10.34349928 10.38330607 10.28150307 10.17116018 10.31687893 83756626 MATE_antibiotic Antibiotic resistance transporter Salinibacter ruber DSM 13855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 8.956677859 9.106890243 9.101608598 8.349538069 8.43938862 8.311237074 8.730002941 8.515440616 8.575124452 8.359707113 8.306128326 8.515284534 24983998 TerC Metal Resistance Tellurium Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 9.198631098 8.931315541 8.774338598 8.523152763 8.627630484 8.325287758 8.253310189 8.529530397 8.278832355 8.357752881 8.799332395 67920251 pcaG Organic Remediation Aromatics Other aromatics Crocosphaera watsonii WH 8501 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Crocosphaera;species:Crocosphaera watsonii; 8.568218569 8.487352411 8.67425898 7.97520774 7.865264653 7.817374412 7.927803773 7.786276533 8.175223649 7.727252809 7.485676607 7.944000993 91690165 fnr Stress Oxygen stress Burkholderia xenovorans LB400 7.260046824 7.300984203 226307279 obgE Stress Radiation stress Rhodococcus erythropolis PR4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 9.053016444 8.668432821 8.472722682 8.072146252 7.980693221 8.309493885 7.52574244 8.551218789 7.710939614 8.118521658 8.088669566 221730782 CopA Metal Resistance Copper Diaphorobacter sp. TPSY superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax ebreus; 9.43081237 9.239904669 9.461514849 8.979338802 8.570356985 8.568762879 8.483443104 8.459479463 8.514638341 8.625523575 8.722007136 8.969590029 140846931 nagI Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium glutamicum R superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 7.920641697 8.187952483 8.257296785 7.597714616 7.63665798 7.996495872 8.120005409 7.30041872 8.24197554 7.607841529 7.576842228 7.77111549 147668654 obgE Stress Radiation stress Dehalococcoides sp. BAV1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 8.617521522 8.429003994 8.923669204 8.271470824 8.103074794 7.823677356 7.678248145 7.901694474 8.202073276 227953944 sigma_70 Stress Sigma factors Meiothermus silvanus DSM 9946 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 7.975659792 8.136997012 8.35402851 7.748323367 7.578387866 8.087156073 8.284631026 7.968481908 8.351867833 7.720425387 7.78777337 7.483984447 222111711 pilin virulence pilin Diaphorobacter sp. TPSY superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax ebreus; 9.161005123 9.020932318 9.310219576 8.664470721 8.530667955 8.363660831 8.576808231 8.269874328 8.077742497 8.299637981 8.530856225 198038202 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia cenocepacia J2315 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 9.132333385 9.12855597 9.340154411 8.45700941 8.93934148 8.701086678 8.914666695 8.495460259 8.775880278 8.815995577 8.926496528 9.078780101 189423698 fnr Stress Oxygen stress Geobacter lovleyi SZ 8.352576447 8.292792951 8.709951782 7.761223704 7.773421096 7.717220185 7.567208593 7.487664999 7.917406747 7.315845124 7.903985503 189423012 phdCI Organic Remediation Aromatics Polycyclic aromatics Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 9.357305959 8.727478595 8.316191088 7.900976069 7.846014329 8.469092317 8.248483322 8.277505767 8.311306243 8.022285507 92109658 CadA Metal Resistance Cadmium Nitrobacter hamburgensis X14 8.395199526 8.541606608 8.227480542 7.787683623 8.105811791 8.041524097 8.159012572 8.011147518 7.942759582 7.991931216 8.276699295 225571299 katE Stress Oxygen stress Clostridium hylemonae DSM 15053 8.052689318 8.065696367 7.363199644 7.342992578 7.416437308 7.193870965 7.300069976 7.962663398 7.235664385 7.488637487 7.347696948 85708953 hly virulence hemolysin Erythrobacter sp. NAP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 9.001200995 8.756143316 8.5235854 9.118687309 8.95216789 9.230471877 8.80286453 8.919702869 8.891819735 8.987906459 8.545350162 260905596 AceA Carbon cycling Carbon degradation others Brevibacterium linens BL2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium linens; 9.993631758 10.06667315 9.640165122 9.04686788 9.203851876 256783677 amyA Carbon cycling Carbon degradation Starch Streptomyces lividans TK24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces lividans; 8.543117009 8.652481608 8.714716207 8.349829146 8.23990898 8.249827651 7.803132728 8.375575124 7.996600419 8.217238346 8.234304875 8.274403643 227987862 narI Stress Oxygen limitation Meiothermus silvanus DSM 9946 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 7.83948604 7.888821682 7.888487575 8.112806934 7.920080838 8.254523823 7.98483379 7.859716751 7.764953009 86608552 pstB Stress Phosphate limitation Synechococcus sp. JA-2-3B'a(2-13) 8.693836779 8.785236943 8.719532153 8.129338206 8.090301031 8.157709912 8.144125174 7.747282588 7.952351779 7.742385558 8.189253938 32446213 sigma_32 Stress Sigma factors Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 9.286392996 9.010004386 9.011376138 8.515411025 8.736767124 8.616043938 8.698168701 8.922961374 8.570741966 8.941341896 8.953159016 91708893 mauAB Organic Remediation Herbicides related compound Methylobacillus flagellatus KT superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 9.69478036 9.634266485 9.750565039 9.108439913 8.66753562 9.250982252 9.221585457 8.861346704 9.235436665 9.183060112 9.29313592 9.520164501 115449903 ChrA Metal Resistance Chromium Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 9.151910092 8.798813628 9.103850139 8.517789341 8.494936602 8.327698199 8.510828956 8.320227905 8.362896027 8.455470864 8.29180972 8.599742517 118424476 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.534293251 8.106705419 8.42953093 8.521575258 7.387751492 8.674183093 7.583826319 7.704882185 8.490841849 73763008 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.466896646 8.310653115 8.317515266 7.752518304 7.700737368 7.675833435 7.505006331 7.538778045 7.389250162 7.453905397 177842253 ara Carbon cycling Carbon degradation Hemicellulose Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 8.218468215 8.482208727 8.769920108 8.426059271 8.210187357 269098272 amyA Carbon cycling Carbon degradation Starch Sanguibacter keddieii DSM 10542 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Sanguibacteraceae;genus:Sanguibacter;species:Sanguibacter keddieii; 8.822384007 9.133157476 9.337840536 8.403360223 8.58192733 8.528290665 8.220864754 8.418487168 8.690109102 219851147 pstB Stress Phosphate limitation Candidatus Methanosphaerula palustris E1-9c 9.016580576 9.030978452 9.140221027 8.292350075 8.264064169 8.095554689 8.144627328 7.961228261 8.189480385 8.015638903 7.973264727 8.320299372 87281229 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.094379492 7.027513043 55740973 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 8.844621903 8.497450814 8.892571411 8.544242172 8.695264867 9.176666183 9.124729579 8.774322943 8.866928829 8.591364405 170700600 bphA Organic Remediation Aromatics Polycyclic aromatics Burkholderia ambifaria IOP40-10 8.042549577 8.160276144 7.997192264 8.240668893 8.261460106 8.164153982 8.121778071 8.454790765 8.353230829 8.347521976 8.262666752 8.276304973 158316079 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.896269861 8.851358646 8.59101514 8.782745073 8.953552449 8.900937102 9.228361546 8.938919466 9.161548156 9.174962359 9.157986662 9.285758384 62084130 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.246161453 9.168201647 9.276589205 8.710507013 8.811927516 9.009402172 9.345356199 8.917856263 9.602443196 8.592811788 8.715137056 8.790853207 211958131 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 8.078681768 8.29733218 8.345347781 7.240366686 7.576843564 7.594001084 7.82498704 7.152653523 8.26152777 7.352940943 7.215224575 7.420712278 149360189 nahA Organic Remediation Aromatics Polycyclic aromatics Marinobacter algicola DG893 9.229663288 9.288965379 9.313223564 8.64181846 8.714816685 8.83251014 8.340530273 8.051713252 8.554847804 8.450569643 8.88131981 8.579412172 138894322 nirK Nitrogen Denitrification Geobacillus thermodenitrificans NG80-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermodenitrificans; 9.16163947 9.000098627 9.152414967 8.651912006 8.593584565 8.487329563 8.355473864 8.463315005 8.751079175 8.555910559 8.534882895 8.703201716 86284436 pcaG Organic Remediation Aromatics Other aromatics Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.484500464 8.351769924 8.243180493 8.537639759 8.811363225 8.379810484 9.054141369 8.217694979 8.706867355 8.635205072 159881480 gyrB other category gyrB Hydrogenivirga sp. 128-5-R1-1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenivirga; 8.587162521 8.062724786 8.065977177 7.785341017 7.625841567 7.512199068 7.479604637 7.845791619 7.599771147 7.799089838 256585927 katE Stress Oxygen stress Saccharomonospora viridis DSM 43017 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora viridis; 8.765163912 8.311566415 9.044887001 8.960118043 8.788917724 9.033491297 8.824428025 8.644655183 8.849475922 8.805570136 8.583429339 187936462 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.029017992 8.025594175 7.220027308 7.818762125 8.193817339 8.018949182 8.225048372 8.018868859 8.123671543 8.053400212 8.104519218 67988597 nmoA Organic Remediation Aromatics Nitoaromatics Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 8.981852394 9.051145378 8.666345495 8.793927623 9.08828551 9.010060468 8.818915795 9.445196823 8.861412031 9.223835636 9.230459495 9.232152725 26278902 narG Nitrogen Denitrification uncultured bacterium 8.964608474 8.909541158 8.905844254 8.633686036 8.712701253 8.740781857 8.787205172 8.830423429 8.590592672 8.710651533 8.889763635 8.868208893 266625476 sigma_70 Stress Sigma factors Clostridium hathewayi DSM 13479 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 8.307140179 8.357263515 8.476200928 7.712262813 7.58400721 7.773108848 7.447085307 7.798279533 7.390828704 7.489875339 7.696459375 229828460 sigma_70 Stress Sigma factors Shuttleworthia satelles DSM 14600 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Shuttleworthia;species:Shuttleworthia satelles; 8.275643589 8.31357281 8.499561081 7.917822945 7.788835198 7.633738994 7.630655247 7.804044659 7.848221176 7.672181105 7.548732224 7.620252296 167734913 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Xanthomonas campestris pv. campestris superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 8.218074261 8.11650052 8.15815439 8.220291785 8.18703739 7.972887369 8.248272197 8.004164399 8.117005896 8.006664982 7.841726356 116077933 CopA Metal Resistance Copper uncultured methanogenic archaeon 8.679984377 8.424855464 8.514122605 8.34017717 8.267524343 8.290832379 7.835734084 8.244326472 7.839954065 8.368706667 8.729714162 8.257013048 55376485 ZntA Metal Resistance Zinc Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 8.599207463 8.911790137 9.020292885 9.145434561 9.094325149 9.173142543 9.387395956 9.586746259 9.338190115 9.084812979 254442379 sigma_24 Stress Sigma factors Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 8.363923839 8.561556539 8.217077354 8.133686214 7.940714176 8.553118244 8.850653733 8.314712969 8.63115969 7.976390218 8.160004465 8.246419303 134102045 TehB Metal Resistance Tellurium Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 9.008207868 9.130873997 8.937728073 9.025049973 8.983845244 8.763976921 9.037240295 8.947680454 8.723696343 8.931558664 9.048033001 8.793297711 121998762 gyrB other category gyrB Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 8.456270924 8.80134935 8.607701693 8.191736157 8.155196286 8.297603045 8.812033233 8.351399439 8.354970819 8.441304253 8.258107435 170691314 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 9.146441709 9.235440623 9.415091274 8.806094353 8.544227309 8.564158647 8.708773812 8.58095803 8.922503019 8.509372513 8.508301734 8.762423823 88813380 ahpC Stress Oxygen stress Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 8.354594325 8.397583384 7.854842285 7.545157701 7.65594211 7.44146633 7.782374758 7.702622898 7.7161671 7.854594145 147677893 sigma_24 Stress Sigma factors Pelotomaculum thermopropionicum SI superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Pelotomaculum;species:Pelotomaculum thermopropionicum; 8.005800331 8.152253896 7.488547659 7.067953179 7.088997816 187478464 mer Metal Resistance Mercury Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 9.370483465 9.616258012 9.59814401 9.09527497 8.943413865 9.025806272 8.99530147 8.918686061 8.955476485 9.086029155 9.221681916 9.403461372 116748490 APS_AprA Sulphur adenylylsulfate reductase Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 9.971905991 9.993169234 9.708031881 9.389632542 9.583767546 9.412550368 218458368 TerC Metal Resistance Tellurium Rhizobium etli Kim 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.539440474 8.397164887 8.203674281 8.024642705 7.692981402 8.181807342 8.112053665 8.216062989 8.180386235 8.430599848 7.987453057 20502031 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9.269274808 9.265776741 9.588127491 8.568007772 8.569863883 8.54330664 8.360457258 8.203158361 8.435079208 8.393998368 8.398576037 8.790013064 119403706 ara_fungi Carbon cycling Carbon degradation Hemicellulose Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 9.137140419 9.19477712 9.241064646 8.431358138 8.396963756 8.36511565 8.382969653 8.187386509 8.392679979 8.286424651 8.079761324 8.51936241 270308171 Ni_Fe_hydrogenase Energy process Energy process Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 10.02342836 9.954489707 10.00754557 9.333105024 9.256179006 9.68276124 9.215359595 10.02378433 9.313561312 9.692367977 9.843027116 169189944 ureC Nitrogen Ammonification Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 8.931463809 9.178780068 9.181116598 8.639069968 8.43770027 8.388060406 8.298938568 8.310049166 8.334473115 8.171095954 8.198909772 8.541314156 148501160 proO Organic Remediation Aromatics Other aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 9.669977892 9.679679515 9.703749884 9.145525479 9.079044091 9.122070936 8.827670406 8.986707743 8.888782074 9.024305123 8.998283075 9.311878152 78035311 xylanase Carbon cycling Carbon degradation Hemicellulose Xanthomonas campestris pv. vesicatoria str. 85-10 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas euvesicatoria; 8.61043319 8.625255253 8.27316577 8.167715795 8.030177935 8.219145911 8.237366173 7.937105988 8.086570947 7.959921219 8.319365721 145235441 pstB Stress Phosphate limitation Aspergillus niger 8.1975913 8.150356832 8.411103173 7.442301865 7.363170258 7.698963782 7.638257086 7.30950815 8.026375738 7.402853894 7.622175201 7.674292105 229749268 phoB Stress Phosphate limitation Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 9.208223089 8.898515088 9.045918529 9.082494883 8.870420914 8.583372725 8.891861895 8.966703249 8.864103424 8.785255936 8.800186976 8.811464762 222147223 phn Organic Remediation Herbicides related compound Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 8.277622015 8.339328141 8.029709792 7.897588695 7.64468443 7.956507551 8.094476671 7.581926944 7.700543492 7.664831689 8.103030675 7.866934528 118045776 CadA Metal Resistance Cadmium Chloroflexus aggregans DSM 9485 9.026787583 8.937006328 9.079500244 8.587218196 8.510109899 8.48371944 8.484697702 8.346345208 8.551513447 8.435792566 8.607736581 8.819633714 111617447 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 8.587133079 8.170235039 8.286004228 8.280404107 8.308109746 8.433171029 8.289403862 8.312163491 7.833427847 8.158744141 7.902692739 150028717 nhh Organic Remediation Aromatics Nitoaromatics Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 8.971990795 9.033049857 9.057218961 8.340992949 8.362427499 8.51021925 8.391339435 8.164290827 8.657955081 8.131397626 8.104574984 8.397492986 20502015 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.050979199 7.985991471 8.338723269 8.245011113 8.140999599 8.153376925 8.180088276 8.57565734 8.570438516 8.482222351 8.268663932 8.356029954 121998388 BchY other category chlorophyllide reductase Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 8.082432754 8.371988641 8.586738081 7.783003704 7.302041722 8.281785306 8.285136838 8.194581922 8.376558259 8.087234145 8.123081455 7.904671136 154162227 oxyR Stress Oxygen stress Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.562389954 8.419764421 8.366596697 7.997162189 8.075941567 7.852036174 8.011583728 8.069368377 8.040460004 77378729 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.992372729 8.062724786 7.457380855 7.321545677 7.308899934 7.11746657 6.884457478 7.506638125 7.245639973 7.162702836 7.134559652 261280681 amyA Carbon cycling Carbon degradation Starch Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.897393356 8.86981097 8.853912859 8.648603609 8.698383544 8.583422538 8.836807038 9.183682804 8.537892503 9.015385389 8.948592728 8.9800684 220711574 phtA Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.082359628 7.920326468 7.157468849 7.304601407 7.468273148 7.322842072 7.145532693 7.820878102 7.337055835 6.936731134 6.971615237 209958923 katE Stress Oxygen stress Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 8.606202189 8.630306953 8.666636812 8.130316293 7.746958915 8.274198953 8.087359299 8.230535485 8.334254186 8.021891057 8.485564227 28868161 TerD Metal Resistance Tellurium Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 9.187594186 9.249969053 9.176962896 8.651638485 8.716460492 9.140210344 9.067811058 8.505671751 9.360515332 9.06621619 9.280017853 9.030076205 39649728 nhh Organic Remediation Aromatics Nitoaromatics Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.162753791 9.38771088 9.289945053 8.924553386 8.856613742 8.551448804 8.716052878 8.704661836 8.790865604 8.777665356 8.862639051 8.75724262 118762816 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 9.241017733 9.052305373 9.072153435 9.053823114 8.838792179 8.557140265 8.601944127 8.990039964 8.954139125 8.967883966 8.896327921 8.835913111 212171520 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 8.440693079 8.30692474 7.76688883 7.762162929 8.168552088 8.453668801 8.048437408 8.438687363 7.703889349 8.165846095 7.956614552 37528230 pimF Organic Remediation Aromatics Aromatic carboxylic acid Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 8.671108857 8.452408924 8.588176052 8.698591175 8.407155171 8.033501283 8.441113139 8.606795773 8.644626629 8.446583211 8.265403187 8.282006761 111023758 oxyR Stress Oxygen stress Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.753001318 8.823329072 8.581561246 8.57329499 8.60322782 8.362067801 8.474970782 8.71455642 8.518295967 8.81596906 8.669713222 8.68923069 254508156 oxyR Stress Oxygen stress Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 8.558030608 8.368015902 8.42095184 7.87440678 7.854192612 7.961378876 7.961630873 7.845001636 8.188731175 7.837759647 7.775767202 7.997556714 84382965 gyrB other category gyrB Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 9.67930567 9.708477319 9.770046007 8.951046387 9.026757149 9.255630987 9.935443182 9.001523632 9.900545764 9.035021831 8.912819023 9.06752035 38679252 CODH Carbon cycling Carbon fixation Pseudomonas carboxydohydrogena superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae; 9.093518793 8.944940574 8.80184761 8.900998919 8.75538636 8.947289574 9.087397483 8.785934451 9.251319732 9.014940781 9.015004477 8.970810634 238719804 MATE_antibiotic Antibiotic resistance transporter Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 7.194720025 7.372611886 7.096429938 7.047850942 7.436243696 7.147824731 6.855326388 213156817 ureC Nitrogen Ammonification Acinetobacter baumannii AB0057 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 8.637342295 8.713349355 8.435039499 8.390660401 8.330609274 8.359183426 7.973870501 8.064111509 8.24371928 8.265049947 8.160332017 8.492838145 183226609 cadBD Metal Resistance Cadmium Lactobacillus fermentum IFO 3956 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus fermentum; 8.228582176 8.19289874 7.628422345 7.529024392 7.993451134 7.95567297 7.634119627 7.915782581 7.682704394 7.574343067 7.754260638 134137245 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 9.563326625 9.497386951 9.236345648 9.466385058 9.42975455 9.28896863 9.471389177 9.688926994 9.119233413 9.588607282 9.271393644 119369904 gyrB_gene Bioleaching other category Acidithiobacillus ferrooxidans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus; 8.877465079 8.902997994 8.993814697 8.34623345 8.406136479 8.543528628 8.553279302 8.28005365 8.889422526 8.347224515 8.447148965 8.636481612 68551088 dsrB Sulphur sulfite reductase Pelodictyon phaeoclathratiforme BU-1 8.101123234 8.04273402 6.99929293 7.131652477 162568499 aoxB Metal Resistance Arsenic Alcaligenes sp. T12RB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes; 8.840481766 8.773044018 8.754960278 8.522197934 8.495984911 8.936990409 9.423083156 8.848521371 9.157254391 8.937852608 8.868428812 8.652981802 134101895 alkK Organic Remediation Others Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 8.693505858 8.854666715 9.108048679 8.077456557 8.202968363 8.136468962 8.213254641 8.003893735 8.310170696 8.134354735 8.094567091 8.353712548 119460790 oxyR Stress Oxygen stress marine gamma proteobacterium HTCC2080 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.934303334 8.521506268 8.45502467 8.129048206 7.852969899 8.065482377 7.790284211 7.669345628 8.112479856 8.056057671 7.957587404 7.805199136 209401856 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.705968922 8.563247612 8.573016758 8.609111777 8.727308861 8.378398996 8.393723395 8.384877499 8.077222939 68535710 CopA Metal Resistance Copper Corynebacterium jeikeium K411 9.503479762 9.528660667 9.685256777 9.036991281 9.033958038 8.993670728 8.709724782 8.972954725 8.76224817 9.004614535 9.02143464 9.19389239 251773642 ahpC Stress Oxygen stress Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.789938067 8.771991944 8.731261793 8.300316785 8.235294721 8.568813425 8.98934382 8.599316283 8.583451341 8.658041814 134299330 arsB Metal Resistance Arsenic Desulfotomaculum reducens MI-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum reducens; 8.677418098 8.576446758 8.865462884 7.894840121 7.667839103 7.82552666 7.546140965 7.571736706 7.708310628 7.435574583 7.986801036 116506184 katE Stress Oxygen stress Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 9.988963647 10.01425013 9.87713436 9.086046659 9.463407652 9.713034419 10.2719971 8.91400835 9.994784924 9.139800804 9.612105024 9.206352645 119377374 sigma_70 Stress Sigma factors Paracoccus denitrificans PD1222 8.552657443 8.873141506 8.653539935 8.964040939 8.912313026 8.875451089 8.763561385 9.14440498 8.658716413 9.026929969 9.007855147 8.581537945 212171406 alkB Organic Remediation Other Hydrocarbons Alcanivorax sp. S9-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 8.449290067 8.63133223 8.576512936 8.276442429 8.134340219 8.148226835 7.902273838 7.867683131 8.21082401 8.029450681 7.899443464 7.913878485 199591268 ppx Phosphorus Phosphorus utilization Lactobacillus rhamnosus HN001 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 8.354334192 8.039972591 7.188097292 7.004861022 7.421580384 7.180627823 134075274 phenol_oxidase Carbon cycling Carbon degradation Lignin Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 8.28732671 8.255998519 8.127812046 7.760682625 7.651514914 7.074313876 7.535811517 7.704773005 7.540634531 7.997597685 240250332 pcc Carbon cycling Carbon fixation Bifidobacterium animalis subsp. lactis DSM 10140 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 9.186535529 9.458762323 9.232363121 9.431178559 9.559031383 9.02154058 9.6411699 9.40063846 9.365510655 9.577309614 9.511970066 8.893622065 154159886 pcc Carbon cycling Carbon fixation Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.788711141 9.041344804 8.991727919 9.273021365 9.35555509 8.941840108 9.202209862 9.515010293 9.060751378 9.212114783 8.888207305 9.067966407 261855081 sigma_70 Stress Sigma factors Halothiobacillus neapolitanus c2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Halothiobacillaceae;genus:Halothiobacillus;species:Halothiobacillus neapolitanus; 8.188923962 8.146135527 8.230447353 8.111309636 8.177188382 7.908554207 8.402050291 8.365514316 8.410706699 7.93069372 209502393 ahpC Stress Oxygen stress Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.877349434 8.772243304 8.933602383 8.82257532 8.421410678 8.273112493 8.658224278 8.650277653 8.637517512 8.617224963 8.347830369 8.379678212 7380320 ppx Phosphorus Phosphorus utilization Neisseria meningitidis Z2491 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria meningitidis; 9.792332901 9.55950547 8.780268461 9.597000404 9.743611775 9.79323585 9.7617282 10.05890979 9.776477499 9.777418246 9.791638346 9.785302773 266635498 B_lactamase_C Antibiotic resistance Beta-lactamases Erwinia pyrifoliae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia; 8.48613074 8.572631473 7.797993695 8.280515463 8.359892581 8.507890922 8.274000607 8.631305702 8.463002761 8.669663232 188583323 merP Metal Resistance Mercury Methylobacterium populi BJ001 8.442906667 8.364444577 8.015003511 8.277012832 8.024077635 8.040885375 8.570487519 8.345034986 8.499341371 8.383586291 8.214325898 78609548 linC Organic Remediation Pesticides related compound Lactobacillus sakei subsp. sakei 23K superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus sakei; 8.35784966 8.192019934 8.446074546 7.854265267 8.061601043 8.124408723 8.111229275 8.240935332 8.238404679 8.362670548 8.230186001 8.039069136 145230135 tfdA Organic Remediation Aromatics Chlorinated aromatics Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8.236600301 8.131931404 7.450614467 7.81535733 7.347866393 7.152784141 7.305965718 7.393342847 7.519911696 7.71855955 71848368 sox Sulphur Sulphur oxidation Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 8.749759112 8.753775533 8.433928371 8.21812378 8.470709815 8.596800673 8.393068813 8.4617863 8.604145694 8.414748226 8.973332694 8.470723856 14023848 ara Carbon cycling Carbon degradation Hemicellulose Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 9.650983503 9.677541137 9.509386761 8.582229037 8.67127052 8.93945841 9.271201291 8.674805504 8.958678579 8.573081254 8.889948618 9.039750139 116754016 pstC Stress Phosphate limitation Methanosaeta thermophila PT 8.183746824 7.960806404 8.321395752 7.809844424 7.833094255 7.728021918 7.609196918 7.719834192 8.040666025 7.823527295 7.749772771 7.636370822 89053641 pimF Organic Remediation Aromatics Aromatic carboxylic acid Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 8.766684661 8.880476823 8.613569693 8.216092328 8.179969714 8.465920932 8.684251773 8.505302768 8.601908939 8.21341962 8.429900747 8.471896629 148262878 hydrogenase Energy process Energy process Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 9.755793693 9.860526416 9.856917493 9.139525861 9.077003698 9.020112622 9.110999801 8.972565915 9.180729303 9.150341428 8.946313386 9.414527576 78514625 Catechol Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. BTAi1 10.23677351 9.987625428 10.14931475 10.49208369 10.63429578 10.49802637 10.13744779 10.63873596 10.49413338 10.66692667 10.69371078 10.85784087 49531793 MATE_antibiotic Antibiotic resistance transporter Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 9.101161022 9.02204629 9.211550073 8.557270793 8.577624864 8.504445663 8.347940133 8.582253118 8.392428479 8.429227887 8.780301891 73763046 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.646371374 9.389951945 9.425795744 9.184960445 9.203226195 8.863667888 9.158342377 9.271125931 9.277624706 9.206132443 8.988059328 9.244203361 119536545 akbF Organic Remediation Aromatics BTEX and related aromatics Nocardioides sp. JS614 8.686378063 8.580374411 8.33453336 8.228622157 8.39023592 8.690534023 8.586546646 8.456394209 8.738348315 8.609706635 8.364108751 8.472403694 238790105 ureC Nitrogen Ammonification Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 9.32083207 9.055217225 8.887699158 8.937723591 8.888502448 8.661931767 9.19722783 8.827646161 8.943488146 9.048829696 9.26007357 223964256 bglP Stress Glucose limitation Holdemania filiformis DSM 12042 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichi;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Holdemania;species:Holdemania filiformis; 9.046698984 9.091954291 9.018921812 8.637969463 8.686468657 8.632332722 8.437628256 8.477320229 8.380979757 8.535482182 8.367960327 8.838463759 268618506 pstB Stress Phosphate limitation Sulfurospirillum deleyianum DSM 6946 8.621313786 8.455237988 8.634233424 7.965629446 7.818649482 7.925916823 8.035423623 7.822873478 7.852553702 8.018844553 8.097260114 156450772 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 8.344501496 8.323495549 8.474144718 8.213395501 8.156868698 7.822352244 8.093908703 8.195459359 8.161597288 8.136201528 8.098217616 7.689569186 119538763 TerC Metal Resistance Tellurium Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.288428997 8.093193051 8.435827286 7.909493336 7.354820682 7.523877366 7.885793843 7.509082874 7.956696806 7.648146321 7.529804275 7.48637108 33864435 Al Metal Resistance Aluminum Prochlorococcus marinus str. MIT 9313 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 8.911374105 8.397854428 8.364629266 8.368848995 8.383984535 171464947 mer Metal Resistance Mercury Dyella sp. Is-D136 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Dyella; 8.380788603 8.089811194 7.961973192 8.037926405 7.980438928 7.940030409 8.055557659 8.095859689 8.338905305 8.028934391 8.119893272 8.12709044 13357761 CopA Metal Resistance Copper Ureaplasma parvum serovar 3 str. ATCC 700970 superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Mycoplasmatales;family:Mycoplasmataceae;genus:Ureaplasma;species:Ureaplasma parvum; 7.129742183 7.031027065 6.543497681 7.319780445 7.109783317 6.814142734 7.357916288 120402869 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 9.315611712 9.210998422 8.873212736 9.116813398 8.490421169 9.346561457 8.986176773 9.375226905 9.203687042 258594758 sigma_32 Stress Sigma factors Desulfurivibrio alkaliphilus AHT2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfurivibrio;species:Desulfurivibrio alkaliphilus; 8.296938128 8.364066672 8.287765861 7.593454477 7.557749846 7.692769682 7.802564533 7.237280059 8.102324512 7.658221288 7.408107033 7.746329999 170693210 nagG Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 8.271593665 7.838318648 7.248232954 7.425222573 7.723913395 7.699356736 7.560989595 86283057 MFS_antibiotic Antibiotic resistance transporter Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.834291709 7.746885918 7.829812347 7.760242008 7.665442756 7.890995358 7.791524885 7.825895666 7.717634445 36786085 ppk Phosphorus Phosphorus utilization Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 9.205886256 9.152661776 9.097031848 9.711090519 9.648011401 9.768076607 9.402101621 10.02779496 9.098284063 9.884314741 9.966548277 9.335122776 111150334 chnB Organic Remediation Other Hydrocarbons Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 9.159261688 9.103978717 9.104707764 8.859088826 8.74998242 8.638460309 8.472093503 8.900612574 8.56513111 8.687216735 8.735907755 9.064575432 164643400 phenol_oxidase Carbon cycling Carbon degradation Lignin Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 8.47677782 8.238679986 8.307188107 8.264281533 7.841793665 7.864135546 8.112978777 8.368706363 8.121074642 8.036989842 8.361587369 8.323093008 95111537 nitA Organic Remediation Aromatics Other aromatics Pseudomonas superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae; 9.745585152 9.571699062 9.553272629 9.338993659 9.223307531 9.145012879 9.699418839 9.439895629 9.53766784 9.276834961 9.64282863 9.525780393 58583292 ppx Phosphorus Phosphorus utilization Xanthomonas oryzae pv. oryzae KACC10331 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 9.018189323 9.038087256 9.039874056 8.775156347 8.919860048 8.87144183 8.546546003 8.880785045 8.491922829 8.650937909 8.727915093 9.042906111 118589317 phoB Stress Phosphate limitation Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 8.994796228 8.879160375 9.086448032 8.352848442 8.503565928 8.112951799 8.134534788 8.609989167 8.471695061 8.350482273 8.278168088 8.246560337 87281165 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.860336968 9.454727633 9.180670557 8.681440627 9.036941755 9.009664253 9.112977662 9.033680199 9.258925527 8.745693827 8.896006493 8.901031537 99081718 pcc Carbon cycling Carbon fixation Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8.779995103 8.642970238 8.774162309 8.717383686 8.433796506 8.317179503 8.548249348 8.384070372 8.458925262 8.519819915 8.564694391 8.536218248 119695742 obgE Stress Radiation stress Mycobacterium sp. KMS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.731389281 8.553880935 8.831513804 8.499524244 8.664249715 8.827384056 8.871893893 8.73857352 8.750513927 8.467075068 8.966246633 8.661342956 221730778 CadA Metal Resistance Cadmium Diaphorobacter sp. TPSY superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax ebreus; 11.00842896 10.81884127 10.46886835 10.89852576 10.86839941 11.00410534 10.95091808 10.84173697 10.86803063 10.66741881 10.91129751 10.49709993 207087285 pstA Stress Phosphate limitation beta proteobacterium KB13 8.430188639 8.298694989 8.881224051 8.375868827 8.060591075 8.000552355 7.661910312 7.702522899 8.085425313 157168017 ArsC Metal Resistance Arsenic uncultured bacterium superkingdom:Bacteria; 8.471411468 8.412386538 7.992698528 7.774995236 7.591559817 7.725903781 7.885048573 8.230519476 7.924213434 8.083078124 7.884960748 16262801 fnr Stress Oxygen stress Sinorhizobium meliloti 1021 9.436927451 9.34129171 9.465281 8.570179683 8.415946637 8.716946126 8.50375323 8.214708212 8.660119184 8.487592387 8.520190817 8.744188599 27352305 SMR_antibiotics Antibiotic resistance transporter Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.776358143 8.844085969 8.829421135 8.403104444 8.226860244 8.445235451 8.160436684 8.19721636 8.422019418 8.096944961 8.271888483 8.381300019 1944017 gyrB other category gyrB Comamonas testosteroni superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 8.500339409 8.468590867 8.658039303 9.197151774 9.016537429 8.844937042 8.899231797 9.502704657 8.89562405 9.204675292 9.106892842 9.258284599 151636 vanA Carbon cycling Carbon degradation Others superkingdom:Bacteria;phylum:Proteobacteria; 8.840636033 9.003286802 8.92640697 9.390181724 9.492628129 9.339400326 9.090939908 9.61676545 9.042334488 9.490539545 9.314281157 9.452105724 114228443 endochitinase Carbon cycling Carbon degradation Chitin Serratia marcescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 9.443017875 9.614599756 9.272721447 9.400821637 9.594560753 9.276895352 8.951627089 9.673413454 9.111156853 9.49472523 9.458932021 9.654512458 150963364 pstC Stress Phosphate limitation Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.752152762 8.55991348 8.561442241 8.516487609 8.791361941 8.908927268 8.953572775 8.986395909 8.926410079 8.74583604 9.169585044 8.77782729 85775219 sox Sulphur Sulphur oxidation Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 9.5244802 9.684081442 9.877879416 9.130200117 9.11243894 9.120635142 9.8410518 9.358094792 9.892530941 9.165053472 9.224419619 8.983100931 146282613 exaA Organic Remediation Chlorinated solvents Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 9.776488461 9.763259276 9.791115803 9.149156009 9.159073286 9.083595143 9.323421839 9.59028229 9.175259939 9.706137094 9.543819134 9.544291019 19917684 nifH Nitrogen Nitrogen fixation Methanosarcina acetivorans C2A superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina acetivorans; 8.948668488 8.570846459 8.66760252 8.375640078 8.060204726 8.040684502 7.942684378 7.856355146 8.08884739 7.845105902 7.907119731 8.08140948 145217881 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.344717289 8.548047632 8.53747236 8.522164334 8.546200014 8.44776598 7.958408482 8.464246088 8.141318 8.378658327 8.362426804 8.43919972 224601406 Tet Antibiotic resistance other Lutiella nitroferrum 2002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Lutiella;species:Lutiella nitroferrum; 9.272752388 9.319080199 9.2263858 8.799974716 8.665655885 8.711056018 8.912429669 8.672275849 8.629261828 8.641534092 8.80191763 8.688781731 74316097 fnr Stress Oxygen stress Thiobacillus denitrificans ATCC 25259 8.093698605 8.589416495 8.663919925 8.064993905 7.985816274 8.161870359 8.344089601 8.252136554 8.397966016 8.507502132 8.637258453 146410031 bclA Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.990506779 8.571915289 9.028975728 8.318514822 8.358243957 8.524624125 8.318397359 8.468737772 8.561576974 8.708916049 8.817061811 8.581556729 163811742 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 9.26374753 9.196806383 9.351147981 8.85555574 8.841636198 8.667671476 8.84419075 8.956184111 8.795236475 8.663420296 9.093345656 151590843 catB Organic Remediation Aromatics BTEX and related aromatics Methylobacterium extorquens PA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 9.192328299 8.920025551 9.134466171 8.367602003 8.640888677 8.525988886 8.68798904 8.4656725 8.287204695 8.241791848 8.571762787 5101853 phn Organic Remediation Herbicides related compound Klebsiella aerogenes superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella; 8.781244903 8.969679753 8.747996624 8.551972472 8.463682562 8.322917544 8.719744178 8.344797307 9.012307733 8.403291523 8.368629216 8.153003587 86570640 sigma_24 Stress Sigma factors Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.681131746 9.496308843 9.379984746 9.159756245 9.109282831 9.211071657 9.520303888 9.196529481 9.551419798 9.068838436 9.061434421 9.102572158 225874509 pstS Stress Phosphate limitation Acidobacterium capsulatum ATCC 51196 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteria;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 8.17848735 8.249931056 7.414722807 7.476097497 7.619951074 7.773223291 7.019388228 8.173298109 7.792700832 7.419390225 7.627987142 193072763 bphA Organic Remediation Aromatics Polycyclic aromatics Streptomyces bingchengensis 8.360032493 8.520503361 8.453487266 8.674606552 8.511582005 8.493486014 8.763930488 8.734459248 8.523089774 8.586970948 8.433708319 8.427560785 158318725 TerD Metal Resistance Tellurium Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.372674627 8.288802039 8.712431442 8.546132815 8.560700996 8.057726096 8.662014569 8.226011978 8.464516337 8.816860642 7.897457218 238783835 ppx Phosphorus Phosphorus utilization Yersinia bercovieri ATCC 43970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 8.303060121 8.489515035 7.950762452 8.628364375 8.42430281 8.094154137 8.376847801 8.174314226 8.464437103 7.970084865 247539202 iro virulence Dickeya zeae Ech1591 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 7.268278093 7.194615842 7.497030688 7.077176741 6.855425184 7.831421105 7.269646087 7.020241682 7.424125857 85689080 ZntA Metal Resistance Zinc Erythrobacter sp. NAP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 9.117135198 8.777006758 8.601586757 9.133763274 8.672276807 8.947730922 8.51058172 8.999844072 8.755257492 8.831603144 8.844407654 146188525 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.602627606 8.596151031 8.675569484 8.312649392 7.9451419 8.034006395 7.645784261 7.60362777 8.185386085 7.997228924 7.975334114 10581283 catB Organic Remediation Aromatics BTEX and related aromatics Halobacterium sp. NRC-1 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halobacterium;species:Halobacterium salinarum; 9.521436355 9.542014889 9.810574665 9.981454518 9.730313653 9.428396983 9.658381702 10.04620954 9.816092708 9.79285519 9.494515719 167360183 nmoA Organic Remediation Aromatics Nitoaromatics Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.605958944 8.083899194 8.726515504 8.357608449 8.200756354 8.103820693 8.508053151 8.386178821 8.302125229 8.568808799 8.283866304 8.300662425 262402570 endochitinase Carbon cycling Carbon degradation Chitin Vibrio sp. RC586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.329278267 8.405049439 8.574548011 7.812320659 7.659894262 7.594946197 7.211881197 7.320124888 7.890553263 7.713524447 7.693407607 7.858229289 76577464 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.582506301 8.611590439 8.476243891 8.666152109 8.869649051 8.943938978 8.959941846 8.803869629 9.206939044 8.546189592 8.893629897 9.067896163 9627908 RNA_dependent__RNA_polymerase Bacteria phage REPLICATION Pseudomonas phage PP7 family:Leviviridae;genus:Levivirus; 8.181374662 8.245485631 7.570252191 7.924956449 7.786090481 7.85268778 7.600634177 8.033370225 7.415955427 7.605269851 7.659167036 11095232 mdlB Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces rishiriensis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.500355486 8.354349523 7.581922679 7.602013234 8.118311111 7.799328552 8517647 sox Sulphur Sulphur oxidation Paracoccus denitrificans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 8.241906752 8.240240937 8.649392093 8.351953041 8.394608767 8.320569726 8.485999461 8.2921575 8.1391132 8.519458398 7.737495447 27378061 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.684204892 7.560062206 7.419627902 7.961584113 7.798556906 7.967284382 7.906673188 7.976849832 186470962 narI Stress Oxygen limitation Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 9.683626094 9.650582578 9.53858468 9.060568938 9.045163162 8.910604342 9.525843225 8.948052841 9.644742781 8.889740164 8.780164523 8.792424781 62424102 pheA Organic Remediation Aromatics Other aromatics Brevibacterium linens BL2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium linens; 9.002047337 8.66808134 8.404236813 9.202960522 9.158427376 9.089185685 9.230047974 8.98253692 9.089724722 8.561937372 8.641678794 8.50100347 160354888 amyA Carbon cycling Carbon degradation Starch Bacillus selenitireducens MLS10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus selenitireducens; 8.520584761 8.728751227 8.908607037 8.52261925 8.498958432 8.094258285 241215130 sigma_70 Stress Sigma factors Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 9.123807989 9.113369422 8.950383817 8.393055992 8.411693669 8.384313894 8.36729352 8.293270885 8.474325005 8.327844596 8.440369926 8.411345484 114227654 pimF Organic Remediation Aromatics Aromatic carboxylic acid Alkalilimnicola ehrlichei MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 8.844604841 8.959715924 9.250329362 8.52435014 8.464923749 8.315444388 8.472582749 8.735492322 8.879547835 8.756567521 8.566218993 8.57900705 223692742 sigma_70 Stress Sigma factors Desulfobacterium autotrophicum HRM2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium;species:Desulfobacterium autotrophicum; 8.881230287 8.605779082 8.757814592 8.353779445 8.216369384 8.176248885 8.219904422 8.056357504 8.195768453 252126791 glnA Stress Nitrogen limitation Corynebacterium matruchotii ATCC 14266 7.936944908 8.125172507 7.633922596 7.641808883 7.624690408 7.899752699 7.324348903 7.615146808 7.717045314 66801879 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 8.113388312 8.339013268 8.346237378 8.199216611 7.955412495 8.522103801 8.439373456 8.10542441 8.140162923 8.00404761 8.302918955 126359412 silC Metal Resistance Silver Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.591078753 8.628549516 8.391792868 7.866581078 7.90497353 7.582589373 8.18237549 7.769012469 8.613334937 7.749377014 7.888783629 8.104129556 183581836 pimF Organic Remediation Aromatics Aromatic carboxylic acid Kocuria rhizophila DC2201 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 8.953605301 8.52998058 9.770848689 9.469861415 8.74434696 9.583855179 8.686445007 9.227523324 9.427756908 220907190 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.351393568 8.26061143 8.608846414 8.059393108 8.014758457 7.755343564 7.631531484 7.719729109 7.957144117 7.61064177 7.576614253 8.167206599 262379056 phoB Stress Phosphate limitation Acinetobacter radioresistens SH164 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter radioresistens; 8.609807234 8.482779903 7.695931382 7.664269238 7.80402399 8.154546352 7.898085873 8.655334873 7.69632344 7.793034448 7.470198791 255925236 SMR_antibiotics Antibiotic resistance transporter Actinosynnema mirum DSM 43827 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinosynnemataceae;genus:Actinosynnema;species:Actinosynnema mirum; 9.112714025 8.839573507 9.051786523 8.661392289 8.673888272 8.417427449 8.575994528 8.936938309 8.740417968 8.577003419 8.483665298 8.768153069 188580308 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 9.286992836 9.109995023 9.345072589 8.678457341 8.546801767 8.544316503 9.09418282 8.750148685 9.017159347 8.788872669 8.783747209 8.783463163 15920287 Fe_S_cluster_binding_protein Bioleaching Electron transport Sulfolobus tokodaii str. 7 8.423525683 8.458438927 8.513915726 7.768290829 7.65932947 8.064134681 7.900986925 7.81858969 8.167743006 8.000727438 7.755888427 8.191724518 170145028 type_III_secretion virulence secretion Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 8.491637593 8.333385741 8.722727569 8.486682029 8.541516734 8.123374453 8.764466075 8.531701572 8.723602623 8.77726234 8.084524015 123987218 Arylest Organic Remediation Aromatics Other aromatics Microscilla marina ATCC 23134 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Microscilla;species:Microscilla marina; 8.415061896 8.417290701 8.475057183 7.896961364 7.945416683 7.968837949 7.670153287 7.817550772 8.18869135 8.049513837 7.708315779 7.908851497 171989257 glnR Stress Nitrogen limitation Exiguobacterium sibiricum 255-15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 9.311599102 8.444883479 8.733885601 8.8074332 8.603635695 8.201051232 8.8235161 8.689669931 8.258866373 8.901903697 8.72471158 194310769 amyA Carbon cycling Carbon degradation Starch Prosthecochloris aestuarii DSM 271 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Prosthecochloris;species:Prosthecochloris aestuarii; 8.121478375 8.389414755 7.368604967 7.328580211 7.243175826 6.996840922 7.186646878 7.486038852 7.14248748 7.08565548 7.327525487 90018746 B_lactamase_C Antibiotic resistance Beta-lactamases Yersinia frederiksenii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia; 7.919436702 7.889657412 8.08796587 7.309465679 7.252247645 7.512749077 7.232262739 7.41287948 7.122571162 8.034598934 7.686172066 7.874467626 224522921 pstB Stress Phosphate limitation Bacteroides cellulosilyticus DSM 14838 9.807441422 9.727497838 9.943184743 9.26712337 9.387672044 9.255751224 9.268634309 9.152215469 9.090728566 9.358359079 9.310822849 9.645561202 146401765 nhh Organic Remediation Aromatics Nitoaromatics Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 8.592309965 8.645534895 8.58505913 8.690643325 8.613790908 8.289129931 8.673295432 8.638602885 8.712789192 8.54822683 8.565731543 8.184281438 49614195 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 8.269502631 8.420715667 7.742069357 7.502174036 7.312099162 7.340492306 7.972935594 7.416484341 7.503547783 92112456 pmdAB Organic Remediation Aromatics Others Chromohalobacter salexigens DSM 3043 8.481231962 8.245201853 8.577024324 8.555708852 8.475709363 8.434570708 8.776906374 8.390008669 8.40714275 8.391581188 8.5225368 110678778 mer Metal Resistance Mercury Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 8.041343101 8.093791689 7.93801269 7.930607805 7.865906988 7.574448982 8.035900811 8.078037467 7.924403156 7.895121031 7.756190464 126635907 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.590315827 8.539950231 8.915144665 7.987756196 7.901177534 8.00390961 7.842789069 7.505836279 7.808273772 7.753594407 7.666318646 7.99416047 223938801 sigma_24 Stress Sigma factors bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 9.166992601 9.28236061 9.056536113 8.411417994 8.672384482 8.615551233 8.589893124 8.645663435 209501024 MFS_antibiotic Antibiotic resistance transporter Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.073502621 8.28521272 8.364817793 7.211368177 7.296054837 7.492254196 7.739003255 7.017029418 7.309439425 7.545344587 7.357856121 149357433 obgE Stress Radiation stress Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 7.991398083 8.077081532 7.622984904 7.55419899 7.846456194 7.549939789 8.022238022 7.954184135 7.596393877 7.926853942 7.394850779 149915669 nifH Nitrogen Nitrogen fixation Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.46322837 8.709995184 8.327298143 8.224116028 8.279980841 8.599552198 8.760121414 8.802419715 8.911737001 8.860980804 8.901261282 8.953039562 28542637 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.629589496 8.421106286 8.887982422 8.541808148 8.510134691 8.088453688 7.845974685 7.639210765 8.182090046 8.064449625 8.05167418 27359051 linC Organic Remediation Pesticides related compound Vibrio vulnificus CMCP6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 9.070130828 8.529480169 8.869878853 8.383473526 8.200349174 8.062446938 8.132829265 8.400906221 133910474 atzB Organic Remediation Herbicides related compound Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 8.538969346 8.644821487 9.010580655 8.161808138 8.135575604 8.237325256 8.688325472 8.199666561 8.691920339 8.399524581 8.481545974 8.260337749 167461682 Al Metal Resistance Aluminum Paenibacillus larvae subsp. larvae BRL-230010 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus larvae; 8.990206695 8.889257227 9.136817366 8.39752887 8.295281552 8.320109205 7.974927224 8.121677686 8.120220937 8.035370822 8.309524814 84501843 pcc Carbon cycling Carbon fixation Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 8.391410301 8.303776478 7.78629079 7.752893829 7.95533815 7.980116922 7.584238933 7.935053978 7.934359302 7.685284266 148259220 heat_shock_protein Bioleaching other category Acidiphilium cryptum JF-5 8.463678276 8.42051105 8.499409919 8.518422026 8.598951873 8.310019056 8.348650112 9.113355162 8.295174851 8.899015591 8.720809726 8.782346588 161522904 silC Metal Resistance Silver Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 8.94345457 8.495726488 8.657903126 8.275084873 8.558934655 8.590540829 8.336422445 8.752358766 8.321019671 8.434646472 8.237643242 218758428 cytochrome Energy process Energy process Desulfovibrio vulgaris str. 'Miyazaki F' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 8.978214228 9.019751678 9.054561856 8.456730983 8.395514181 8.53570381 8.775728986 8.443022638 9.014407041 8.430895021 8.348707764 8.581811146 119774796 cda Carbon cycling Carbon degradation Starch Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 9.322036707 8.993146039 9.435853692 8.862879367 8.668534651 8.530594149 8.733976239 8.758348426 8.778970233 8.779010826 8.824942046 38234622 mhpC Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium diphtheriae NCTC 13129 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium diphtheriae; 8.293033547 8.293629774 8.191798808 8.229754639 8.521724246 8.388878353 8.432034897 8.548277364 8.272458083 8.353948173 8.351018953 162435295 vanA Carbon cycling Carbon degradation Others Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 8.329297318 8.248460189 8.497106382 8.888646241 8.820865824 8.715357267 8.574249131 8.782390921 8.60711039 8.663616883 8.854861561 8.263054808 86285162 groEL Stress Heat shock Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.292035227 8.637551614 8.565404227 8.148447854 8.337432255 8.87713461 9.031829071 8.967343325 8.750298022 9.226127522 9.023971578 9.338853772 115515989 CopA Metal Resistance Copper Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.840230292 8.863670866 8.655664664 8.795092657 8.938562256 8.972638983 9.23497837 9.091700719 8.727593489 9.095539815 9.155054754 9.018247794 172056900 pstB Stress Phosphate limitation Exiguobacterium sibiricum 255-15 8.454196063 8.246956314 7.704018542 7.558684475 7.648961139 7.450966491 7.537152125 7.301048647 7.579221462 7.616019256 124514233 ABC_transporter_II Bioleaching other category Leptospirillum sp. Group II UBA 8.362966255 8.266888159 8.634233424 7.700398915 7.652280032 7.52721186 7.174261767 6.844191329 7.71405166 7.368517546 7.578539008 7.48634881 89895793 sigma_70 Stress Sigma factors Desulfitobacterium hafniense Y51 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 8.457512081 8.36724301 8.400591263 8.591412968 8.359075926 8.434696283 8.098330897 8.319343302 8.2525446 8.421159695 8.19796916 40714547 mnp Carbon cycling Carbon degradation Lignin Trametes versicolor 10.51388539 10.53971117 10.36002207 10.0738523 9.610104145 9.619789334 170077957 gyrB other category gyrB Synechococcus sp. PCC 7002 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 9.807563091 9.740248625 9.700281206 9.758350238 9.702498295 9.585526475 9.307281386 9.776375478 9.216830143 9.546089393 9.50575496 9.836081392 91788490 sox Sulphur Sulphur oxidation Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 9.077353651 9.073593723 9.062359061 8.431304641 8.328715918 8.232965928 8.449156999 8.423379209 8.354224575 8.336340699 8.41783005 8.176730975 68234677 ureC Nitrogen Ammonification Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.27784269 8.485223465 8.449134513 8.825588825 8.563111966 8.46238958 8.600604108 8.829843443 8.666318189 8.711717283 8.72887806 8.333129761 57242559 toxin virulence toxin Campylobacter upsaliensis RM3195 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter upsaliensis; 9.138010806 9.600733231 9.16094503 9.470042396 9.278046653 9.450269526 27497787 cytochrome Energy process Energy process Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.95444189 9.112892848 8.514800903 8.828490538 8.675330587 9.118627949 9.337946789 9.089569071 9.332810426 9.186356854 9.286042558 9.393213014 93356794 pcaG Organic Remediation Aromatics Other aromatics Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 7.648571644 7.678798759 7.997166494 8.060806799 7.785907781 8.108934045 7.843938583 7.898712652 7.637521886 84693457 ureC Nitrogen Ammonification Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 10.00422468 9.967479051 9.880204149 9.567618212 9.735429973 9.538402605 9.708625698 9.276524618 9.908483675 9.687960566 10.03254094 9.955256436 151938499 CopA Metal Resistance Copper Vibrio sp. Ex25 9.000568205 8.706607367 8.965772186 8.067780415 7.93026889 8.370390588 8.538214583 8.129521617 8.009790026 7.848542249 8.214805662 8.09566166 258654534 hly virulence hemolysin Nakamurella multipartita DSM 44233 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 8.414484605 8.405771003 8.386156728 8.275025216 8.382011649 8.209412803 8.26913024 8.847293736 8.556410353 8.557671857 8.841751332 8.721071079 126434012 Catechol Organic Remediation Aromatics Other aromatics Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.824084569 8.735096145 8.788006394 8.617697227 8.377946996 8.023472813 8.243906911 8.226119717 8.420613328 8.238285398 8.161476015 8.312584631 126249935 glnA Stress Nitrogen limitation Pyrobaculum calidifontis JCM 11548 8.177667187 8.160832739 7.864024872 7.699838419 7.96594032 7.607599962 7.614367775 7.659334458 7.838731357 7.533731523 160938329 BADH Organic Remediation Aromatics Other aromatics Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 8.596538065 8.498759308 8.484758804 8.264225663 8.355156512 8.309978169 8.393613609 8.660800654 8.75768941 8.572567363 8.536408847 8.441577178 15807978 ureC Nitrogen Ammonification Deinococcus radiodurans R1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 9.668493427 9.784733286 9.767381678 9.336729398 9.187877745 9.093329336 9.191127759 9.073325116 9.189706243 9.326365505 9.192706412 9.379721262 111036268 xylG Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 10.07579585 10.14801688 9.99387974 10.04950625 10.24149897 9.963843649 10.18477864 10.42534719 10.21734542 10.30963592 9.930096939 10.29351028 165874787 nirK Nitrogen Denitrification Azospirillum brasilense superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum; 8.865949941 8.414995881 8.6012 8.710183407 8.875230434 8.567246764 8.210207572 8.729268667 8.172751312 8.792501675 8.51581052 9.029022807 151073 HcaB Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.983280204 8.516812887 8.419033543 8.070928008 8.274435064 8.457460648 8.368409156 7.988114102 8.495526783 8.234976201 8.505853746 8.328911828 196112834 grpE Stress Heat shock Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 8.718515767 8.502366016 8.804543506 7.783847469 7.781505298 7.995164169 7.934356666 7.749440787 8.188697782 7.7486776 8.282583717 209542223 mauAB Organic Remediation Herbicides related compound Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 9.338525362 9.497947102 9.487281577 8.881125213 8.384776568 8.578055319 9.173659798 8.873778822 8.882475627 8.743393087 8.728019632 8.847167925 189196560 endoglucanase Carbon cycling Carbon degradation Cellulose Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 8.520325064 8.427342196 8.611638781 8.245019558 8.243241536 8.182510132 8.042190267 8.198588672 8.413536109 8.281962125 8.099134084 8.118606644 37522627 todF Organic Remediation Others Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 8.252508017 8.190953109 8.322699303 7.491547467 7.938957206 7.969229694 7.768841099 7.488726085 7.669965263 7.671806345 7.668149546 55469835 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.505377371 8.816139571 8.653709056 8.491188302 8.832149969 8.488164345 8.750225774 9.123774609 8.654876333 8.548774185 8.274643323 8.399965433 3420957 hydrogenase Energy process Energy process Rhodobacter capsulatus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 9.776062554 9.460029044 9.636945218 9.181661767 9.057890298 9.075808483 8.902711629 8.94486369 8.94521334 9.068824712 9.161775875 9.350455979 198264952 nhh Organic Remediation Aromatics Nitoaromatics Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 8.930759193 9.105030253 9.046887994 8.379927724 8.35342295 8.551053707 8.975364373 8.573092558 9.110305202 8.372169902 8.351190859 8.302019332 222148053 glnA Stress Nitrogen limitation Agrobacterium vitis S4 9.296331588 9.333828107 9.585630986 9.105683023 8.920711896 8.709029448 8.73819015 8.928066242 8.93836315 9.143483819 9.182987128 9.334065665 56786630 phenol_oxidase Carbon cycling Carbon degradation Lignin Trametes versicolor superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 8.404345107 8.082950432 8.624284801 8.532553822 8.158663203 8.044252145 8.006797961 8.484663442 8.485784855 8.447112418 8.380167222 8.46074391 159036258 nmoA Organic Remediation Aromatics Nitoaromatics Salinispora arenicola CNS-205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 9.048575673 8.991011239 8.946530327 8.46564841 8.437829661 8.533197519 8.347238219 8.426571382 8.482251063 8.502277126 8.584636862 8.685129474 196190298 ppx Phosphorus Phosphorus utilization Synechococcus sp. PCC 7335 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.045247246 7.018079596 68267939 glnA Stress Nitrogen limitation uncultured cyanobacterium 8.630598042 8.53430721 8.609862052 8.104963895 8.064025384 7.918439347 8.163520684 7.769142049 8.121880717 7.88624144 7.816500472 7.866029181 119954372 nahA Organic Remediation Aromatics Polycyclic aromatics Mycobacterium vanbaalenii PYR-1 8.997769406 8.60286535 8.682632537 8.256332814 8.186360083 8.109961767 8.29132717 7.786082962 8.820608784 8.024243286 7.923231181 8.12859476 22036072 bphA Organic Remediation Aromatics Polycyclic aromatics Terrabacter sp. YK3 8.832364777 8.67667266 9.028951008 8.017697769 7.717315086 7.840183504 7.628969075 7.649053204 7.575642878 8.084340601 110286875 nagI Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 8.330839579 8.124647564 7.73217411 7.941169415 7.566308932 7.452290478 7.595909985 7.744802109 7.666664864 91783772 PobA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.818276185 8.831834569 8.586761179 8.372457663 8.039494323 8.053801599 8.457171213 8.046647557 8.635726513 8.303771471 8.33695604 8.153044711 197718622 pcc Carbon cycling Carbon fixation Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 8.394173212 8.602114633 8.043224867 7.802398471 8.100703177 8.338755016 7.63213921 8.464887065 7.824655475 8.247666572 256848542 pstB Stress Phosphate limitation Lactobacillus coleohominis 101-4-CHN 8.02156751 8.053169413 8.524421122 7.293781125 7.339030468 7.326697693 6.976500757 7.039902785 7.521638048 270501412 sigma_24 Stress Sigma factors Micromonospora aurantiaca ATCC 27029 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora aurantiaca; 8.068258202 7.618274246 7.915479688 7.886381179 8.184158843 8.233715295 8.152220391 8.278558021 7.997774321 227181288 glnA Stress Nitrogen limitation Corynebacterium glucuronolyticum ATCC 51866 8.247030086 8.361472555 8.309485497 8.090683641 7.743674105 7.676549931 7.595529457 7.32432534 7.960835398 7.694632542 7.329572015 7.923642834 89080255 TehB Metal Resistance Tellurium Oceanospirillum sp. MED92 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Neptuniibacter; 8.712837974 8.560735363 8.863329269 8.332916373 8.036759721 8.110823966 7.599950404 7.584952415 8.207182386 7.784514209 7.653627912 8.032305158 193077031 4HBH Organic Remediation Aromatics BTEX and related aromatics Acinetobacter baumannii ATCC 17978 6.877207537 6.793446274 7.370869856 92112609 obgE Stress Radiation stress Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 8.283025147 7.86852955 8.002921274 7.795952867 7.417835842 7.520234097 7.544850518 8.137937726 7.950253627 7.903344467 239801872 pstC Stress Phosphate limitation Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 8.923512057 9.058608278 8.760570243 8.407251914 8.53115914 8.518138734 8.886431896 8.507082703 8.669155535 8.547128948 8.71510967 8.63262624 189347185 hrcA Stress Heat shock Chlorobium limicola DSM 245 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium limicola; 8.612624549 8.571729782 8.774206968 8.181295635 8.105776275 8.128305734 7.908042853 7.89135919 8.263260122 8.032151991 7.976665145 8.218101504 227379034 B_lactamase_C Antibiotic resistance Beta-lactamases Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 8.151345677 8.353060575 8.43142379 7.782644643 7.939105658 8.100736908 7.820150286 7.980274852 8.135069008 8.305737034 7.959808543 8.002174478 172072012 TerC Metal Resistance Tellurium Micrococcus luteus NCTC 2665 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus;species:Micrococcus luteus; 9.95740856 9.338585199 9.096306316 10.33824968 10.35032872 10.01309383 10.29798256 10.16922319 9.62489088 9.907503157 9.838767531 41406938 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 8.444257951 8.384372609 8.208543661 7.800894652 8.095600115 8.27432885 8.653135468 7.57009474 8.714298775 8.15945842 8.088716151 8.537461998 196478323 ArsC Metal Resistance Arsenic Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 8.728203974 8.967291783 8.831808959 8.365357736 8.419920801 9.180874682 9.349999801 9.155579728 9.026465289 8.611295523 8.905029577 9.181011879 67920055 gyrB other category gyrB Crocosphaera watsonii WH 8501 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Crocosphaera;species:Crocosphaera watsonii; 8.41617185 8.378576353 7.544014064 7.355627203 7.243433271 56785440 phenol_oxidase Carbon cycling Carbon degradation Lignin Trametes sp. AH28-2 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 8.486301734 8.802457362 8.649439499 8.395882947 8.446281013 8.887493352 9.170475194 8.744171473 9.127901679 8.5135952 8.345621618 8.492397444 78696087 ChrA Metal Resistance Chromium Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 9.296824127 9.258253591 9.172581985 8.798228735 9.065636471 9.417271479 8.758996092 9.663499562 9.4503654 9.521998027 9.148601653 188585608 pstA Stress Phosphate limitation Natranaerobius thermophilus JW/NM-WN-LF 8.584102624 8.369493306 8.746154618 7.854040653 7.482733304 7.755935265 7.658972252 7.363884792 7.972562331 7.783383151 7.857410018 8.059862717 144897347 oxyR Stress Oxygen stress Magnetospirillum gryphiswaldense MSR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 9.618665361 9.092691774 9.820243485 8.777932707 8.903431739 9.054402503 86742884 nagG Organic Remediation Aromatics Aromatic carboxylic acid Frankia sp. CcI3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.437012826 8.537999978 8.944869641 8.619833269 8.75917985 8.258412572 8.409311231 9.07463723 8.746194017 8.693169595 8.541661388 8.56600405 45444767 tfdA Organic Remediation Aromatics Chlorinated aromatics uncultured soil bacterium superkingdom:Bacteria; 8.209336435 8.154133062 8.099944544 8.119965404 7.905539627 8.148707849 7.684368367 8.226208208 8.274116947 8.278720459 8.204109219 7.634844924 89346487 glnA Stress Nitrogen limitation Rhodoferax ferrireducens T118 7.047677201 7.133227589 7.537020079 7.510559561 7.818712976 7.996330247 7.703413633 7.741984647 8.087724298 229468875 srt virulence surface protein Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 8.477369566 8.218512961 7.786935969 7.726671994 7.921626053 8.389996839 7.208594048 8.291273043 7.796632048 7.625100947 7.914779012 145555417 CopA Metal Resistance Copper Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 9.073128569 9.3938203 9.197928578 9.687761106 9.552149241 8.947728245 9.60808406 9.405295255 9.393362714 9.158967604 8.888388482 9.226347124 228009109 AceB Carbon cycling Carbon degradation others Sulfolobus islandicus Y.G.57.14 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus;species:Sulfolobus islandicus; 8.950405536 8.791506651 8.927452932 8.414089561 8.500370346 8.400912402 8.156138819 8.470323538 8.418232142 8.156557085 8.516095876 85068532 katE Stress Oxygen stress Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 8.276869236 8.695696442 8.410589366 7.709480762 8.062872951 8.099713436 8.217075471 7.460936559 8.128877294 7.663092205 7.572902357 7.678791365 28901448 amyA Carbon cycling Carbon degradation Starch Vibrio parahaemolyticus RIMD 2210633 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 8.347658853 8.355843316 8.463153531 8.429823699 8.416980418 8.240766231 8.848816748 8.228332032 8.623408748 8.474329718 8.535695262 91977680 amyA Carbon cycling Carbon degradation Starch Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.420825391 8.425818315 8.438535069 8.104163412 7.908571867 8.013917505 8.083532156 8.057898388 8.115277773 8.242490481 8.102148103 8.207800243 99038859 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8.145763746 8.029475038 7.441938653 7.466981464 8.112596324 8.359254466 8.054859288 8.546043895 7.475979523 7.583000643 7.659562647 183580481 pcaG Organic Remediation Aromatics Other aromatics Kocuria rhizophila DC2201 8.594161284 8.648703336 8.792871068 8.076966069 8.078418812 8.363869262 8.386925697 8.070836077 8.285896298 8.413992917 8.520618923 163852741 Mex Antibiotic resistance transporter Methylobacterium extorquens PA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 8.884724462 8.649591534 8.631367413 8.666807297 8.696087496 8.469666006 8.440715479 8.440692935 8.704951958 8.61146252 8.811975668 8.409702248 170079489 nhh Organic Remediation Aromatics Nitoaromatics Synechococcus sp. PCC 7002 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.583647996 7.432104868 7.428958729 7.408726939 7.120051057 7.732627174 7.648606511 7.192887237 7.343812144 160706444 glx Carbon cycling Carbon degradation Lignin Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 7.524945625 7.948011162 7.637164852 7.545662115 8.077092853 62426151 PobA Organic Remediation Aromatics Aromatic carboxylic acid Brevibacterium linens BL2 8.669354109 8.763509002 8.453821291 7.754241897 8.379226878 8.43042024 8.864006184 7.940798701 7.898999209 8.058056549 8.137765358 254416694 B_lactamase_A Antibiotic resistance Beta-lactamases Microcoleus chthonoplastes PCC 7420 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus chthonoplastes; 7.913071815 8.226438379 7.80291705 7.622538474 7.992180079 7.601880929 7.3345793 7.587052936 7.78345906 7.397918172 7.112967139 7.367691101 227197423 katA Stress Oxygen stress Corynebacterium striatum ATCC 6940 8.391669928 8.462143783 8.589351041 7.846311109 7.799755543 7.902956631 7.624606006 7.516953886 7.779146018 7.847087149 7.897112912 8.14002201 55740961 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.659842654 8.163944607 8.414975729 7.849039131 7.671632236 7.684957872 7.441960492 7.562726708 7.714103363 7.70991021 7.837928888 7.862073725 91693304 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.419137313 8.531527019 8.603699854 8.228598306 8.52174635 8.174676437 7.987889674 8.45940937 8.334457117 8.334731909 8.40723272 8.209919369 118174097 nmoA Organic Remediation Aromatics Nitoaromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.873486613 9.196028747 9.10026954 9.198623563 9.273773882 9.043675226 9.290366928 9.408834208 9.022468987 9.522399281 9.167000765 8.767817985 63003121 benAB Organic Remediation Aromatics Aromatic carboxylic acid uncultured soil bacterium 8.845941323 8.679330528 8.870962421 9.046777587 8.9057838 8.921888456 8.682155858 8.819740282 8.95949266 9.105707582 8.625785835 161337149 fnr Stress Oxygen stress Brucella canis ATCC 23365 8.421894238 8.353474489 7.670124956 8.258846721 8.257511401 8.304879047 7.471593517 8.467066769 7.806676629 7.805543799 7.908351299 118163681 nahA Organic Remediation Aromatics Polycyclic aromatics Mycobacterium avium 104 8.297415303 8.369294893 8.199551247 7.891981513 7.862578358 7.900969539 7.629508447 7.86459356 8.056483036 7.839328511 7.868995091 7.841683556 21213052 B_lactamase_C Antibiotic resistance Beta-lactamases Kluyvera intermedia superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Kluyvera; 8.662454376 8.316033805 8.831164317 8.284913684 8.484416832 8.186991292 8.149683253 8.542394188 8.695183354 8.398314975 8.227290877 8.49201706 84702129 hrcA Stress Heat shock Parvularcula bermudensis HTCC2503 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 8.191300203 8.089313823 8.264874143 7.69239425 7.470383696 7.825582338 7.917790009 7.715587503 7.709204788 7.409059661 75911099 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena variabilis; 6.937465971 7.033697652 7.049467034 6.639431157 7.261514276 6.979392179 7.178749767 261415267 nplT Carbon cycling Carbon degradation Starch Fibrobacter succinogenes subsp. succinogenes S85 superkingdom:Bacteria;phylum:Fibrobacteres;class:Fibrobacteres;order:Fibrobacterales;family:Fibrobacteraceae;genus:Fibrobacter;species:Fibrobacter succinogenes; 8.444529716 8.614169267 8.534322793 7.999080283 7.830658901 7.910305129 7.291910463 7.451823782 8.190141395 7.637555481 7.638628086 7.991719897 261607202 AceA Carbon cycling Carbon degradation others Pectobacterium wasabiae WPP163 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium wasabiae; 9.017710804 8.876328874 9.070219297 8.576146683 8.275543896 8.295344205 8.305289902 8.553434817 8.313802389 8.599779997 8.476149103 8.736452372 26990952 CopA Metal Resistance Copper Pseudomonas putida KT2440 9.171783987 9.11764466 9.118746578 8.288369603 8.644657477 8.230256954 8.734076811 8.800638399 221737844 atzD Organic Remediation Herbicides related compound Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 8.497738409 8.371265715 8.291551394 8.244082798 8.368760972 8.527675445 8.579327697 8.346112606 8.482273909 8.160243573 8.285294217 8.060794861 218663319 nhh Organic Remediation Aromatics Nitoaromatics Rhizobium etli IE4771 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 9.94453151 9.72823476 9.660534558 10.09559623 9.926583195 9.944288886 10.24256111 10.09308673 10.03837418 9.90681347 9.924842593 10.14793056 149782997 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.160365954 7.921001037 7.865271373 7.820263947 7.524318827 8.142768244 7.699008566 7.910844772 7.75267865 7.671542005 7.796125219 118705684 vanA Carbon cycling Carbon degradation Others Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 9.581900128 9.480076228 9.469179507 8.98559231 8.804280374 8.607529679 9.114902937 9.091842425 8.872257397 9.166848269 9.117800173 9.217940194 256848492 phoB Stress Phosphate limitation Lactobacillus coleohominis 101-4-CHN superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus coleohominis; 8.376608111 8.189928063 7.66051045 7.647323919 7.747534865 7.443164849 7.526850787 8.027589281 7.458754874 7.751016773 7.534048875 254380815 sigma_24 Stress Sigma factors Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.321367587 8.049379597 8.498325774 8.070994693 7.765873225 8.093610799 8.354544698 8.374040864 8.240185851 8.010066592 7.857006171 223586063 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.317152413 8.17735972 8.153856752 8.469116066 8.293251619 8.100409946 8.390907125 8.568280541 8.494575512 8.540357914 8.447207041 8.534838151 191160741 nrfA Nitrogen Dissimilatory N reduction Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.785582833 8.651932602 8.413138495 8.508307822 8.373777663 8.318985493 8.127116022 8.266349505 8.259180857 8.314249253 8.394794852 283813814 sigma_24 Stress Sigma factors Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 8.315782002 8.407830864 8.187808811 8.0771121 8.194559026 8.164064715 7.896464612 8.477407537 8.059273629 8.238798632 8.442827567 7.845425414 91783541 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 9.032661285 8.648252994 8.524290096 8.550869797 8.734355887 8.79807022 8.852285414 8.883114444 8.920330743 8.784138086 9.114275182 8.853202674 53758880 nasA Nitrogen Assimilatory N reduction Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 9.272744962 9.372349585 8.416089842 9.155606231 8.992719391 9.491237634 9.248600705 8.833834776 8.658904609 8.800817261 8.722151544 83316998 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 11.262966 11.13739731 11.27194005 10.7781852 10.53483565 10.64722494 10.86804377 10.69766459 10.93617014 10.76898814 10.94828176 10.82384507 83718203 4HBH Organic Remediation Aromatics BTEX and related aromatics Burkholderia thailandensis E264 8.306009575 8.007064515 7.919898971 7.774919352 7.634128143 7.620009498 7.799888669 8.079384461 8.018327349 7.869830136 8.000514083 85671675 nosZ Nitrogen Denitrification Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.693433033 8.444956092 8.268767933 8.067507135 8.060306391 7.921106016 8.260210858 8.322595766 8.182319892 8.075741675 8.337573505 260773646 pilin virulence pilin Vibrio metschnikovii CIP 69.14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio metschnikovii; 8.197841239 8.233874584 7.523952831 7.52364722 7.498264222 7.705556662 7.393304823 7.549983722 85721171 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Syntrophus aciditrophicus SB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Syntrophus;species:Syntrophus aciditrophicus; 9.279041418 9.386006227 9.570749796 8.941777537 8.738462444 8.613998103 8.410650261 8.531184674 8.643190861 8.524162075 8.57780729 8.828468259 4468130 dehH109 Organic Remediation Chlorinated solvents Burkholderia sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.058234373 7.657865292 7.311688091 7.707062667 7.783951258 7.607066229 7.573348513 7.331562814 161379303 sigma_70 Stress Sigma factors Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 8.909695812 8.903100586 8.956123079 9.228484075 9.297075735 9.084001264 8.775490475 9.416467123 9.184608997 9.104713844 8.952631162 198281889 phenol_oxidase Carbon cycling Carbon degradation Lignin Pleurotus ostreatus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pleurotaceae;genus:Pleurotus; 7.971948375 8.020507094 7.432459162 7.422262218 7.138185001 6.789648992 7.05143092 7.611543929 7.264563881 7.112822133 7.401961887 269792833 sigma_70 Stress Sigma factors Thermanaerovibrio acidaminovorans DSM 6589 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Thermanaerovibrio;species:Thermanaerovibrio acidaminovorans; 9.283975362 9.158716791 9.328494511 8.289468402 8.045030504 8.187782685 8.602163137 8.187871105 8.032179085 8.296104941 8.342199826 214045892 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 9.708885651 10.09102175 9.81567635 10.39144295 10.06318843 10.00358225 9.998194723 10.15090547 224472740 phenol_oxidase Carbon cycling Carbon degradation Lignin Laccaria bicolor superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria; 8.534307781 8.456064322 8.655675781 8.421805796 8.055033843 8.658693167 8.320312401 8.509011117 8.874789161 8.634287361 8.12825603 71368294 CODH Carbon cycling Carbon fixation Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 9.703015125 9.689418656 9.799803085 9.263515309 9.169382876 8.99654424 9.063958758 9.252307158 9.11744097 9.158723001 9.004308735 9.459240356 257792300 pstB Stress Phosphate limitation Eggerthella lenta DSM 2243 9.00750215 9.132774217 8.694740531 8.730323427 8.670881272 8.858404984 9.057382337 9.016697177 9.184403608 8.69312963 8.586141769 8.840668964 84503105 ureC Nitrogen Ammonification Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 9.763718866 9.558314625 9.676976425 9.434169339 9.341273164 9.119139631 9.23666644 9.511896132 9.132665221 9.304709511 9.403182758 9.498089558 148658254 AceB Carbon cycling Carbon degradation others Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 8.664868559 8.591570208 8.319185925 8.55302899 8.55965942 8.378375839 8.599754672 8.982778031 8.734303925 8.547115078 8.765087684 8.14880206 66967791 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.937911248 7.968024759 7.642155252 7.492118417 7.471931455 7.37745265 7.280244127 7.85171996 7.421981782 7.290897384 7.386910478 76557015 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Natronomonas pharaonis DSM 2160 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natronomonas;species:Natronomonas pharaonis; 9.044189685 8.7338728 8.92942683 8.381274661 8.570959696 8.842649445 8.772625222 8.028176155 9.076143907 8.768168169 8.786261756 8.420688969 170690145 cellobiase Carbon cycling Carbon degradation Cellulose Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 7.430675221 7.438343374 7.495371562 7.126236655 7.603237448 8.035183004 7.655212831 7.786618955 7.278040728 153830779 pilin virulence pilin Vibrio cholerae 623-39 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 6.684190738 7.112677415 46520033 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9.047224266 8.780471068 8.831043781 8.841904019 9.044398189 8.586300479 8.765478813 9.278918561 9.073018688 8.899873529 8.707615867 55979055 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.237091457 7.830271942 8.211728557 7.286343798 7.597921053 7.829609647 8.097399656 6.886091229 7.879947978 7.794499036 7.53314963 7.773239666 18447930 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 8.41722821 8.401919128 8.155875621 8.180937942 7.73459898 8.12828958 8.186436824 8.161452585 7.996107786 7.677753626 7.971013111 163748435 ahpF Stress Oxygen stress Shewanella benthica KT99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella benthica; 9.037004144 8.638318102 8.904370386 8.873955598 8.812938774 8.501209422 8.73687304 8.871126316 8.496324514 8.700762501 8.718164906 8.236964679 118666510 mdlB Organic Remediation Aromatics Aromatic carboxylic acid Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.477172356 8.616643586 8.748814938 8.387529461 8.116664598 7.916894156 7.973708777 8.238452122 8.255485761 8.216974572 8.218536873 8.437817199 108802987 CopA Metal Resistance Copper Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 10.0933552 10.13436344 10.2986025 9.363744936 9.337260881 9.301192414 9.650601892 9.27356463 9.646522653 9.406684261 9.33688116 9.682628382 69936694 pcc Carbon cycling Carbon fixation Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.546412075 8.782224651 8.311362184 8.223587184 8.70249538 8.654944343 8.858919152 8.911727064 8.681517731 9.039766732 8.864945778 8.864215769 148550856 cumA Organic Remediation Aromatics Other aromatics Sphingomonas wittichii RW1 8.963714668 9.027593622 9.243617333 8.517333543 8.527366606 8.573667576 8.460252314 8.391462582 8.573026735 8.497510643 8.568707642 8.677503009 163849266 sigma_24 Stress Sigma factors Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 8.545207465 8.585782952 8.724633465 8.877492205 8.663724325 8.443494784 8.8104153 8.903310946 8.290448423 8.600904882 8.504202638 8.514441442 83773727 ara_fungi Carbon cycling Carbon degradation Hemicellulose Aspergillus oryzae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 10.54786234 10.28891505 10.60599726 9.768364173 9.932199912 9.735540405 10.08025675 9.764886979 10.36530324 10.24248545 10.38633114 9.714570154 44366 nifH Nitrogen Nitrogen fixation Methanobacterium ivanovii superkingdom:Archaea;phylum:Euryarchaeota;class:Methanobacteria;order:Methanobacteriales;family:Methanobacteriaceae;genus:Methanobacterium; 8.167559868 8.131616583 7.457282351 7.293776279 7.309901323 7.184813825 7.398440685 6.939197107 7.104914714 7.555936368 85671353 pcaG Organic Remediation Aromatics Other aromatics Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.74514949 8.916233709 8.854089557 8.132197251 8.359030996 8.359295367 8.75849666 8.298959213 8.791867857 8.203014423 8.108420331 8.356365363 171852532 pimF Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium urealyticum DSM 7109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium urealyticum; 9.316524481 9.396462899 9.214602234 8.574676113 8.53932291 8.910631708 8.414318347 8.30021689 8.609893437 8.545391592 8.854749458 255262296 BchY other category chlorophyllide reductase Thalassiobium sp. R2A62 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Thalassobium; 8.073760946 8.083690748 8.365009916 8.151636019 8.009602748 7.990134113 7.655459601 8.04608428 8.034673626 7.802877294 7.659762647 7.755285072 214042875 bclA Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 9.541638988 9.413197234 8.91511634 8.457418639 8.537897916 8.436617832 8.787465085 70731547 pcc Carbon cycling Carbon fixation Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.231107888 8.277136649 8.377637779 8.454435399 8.30493011 8.110268797 7.914571026 8.5603576 8.413298678 8.419110428 8.055852875 8.242167207 261356260 ara_fungi Carbon cycling Carbon degradation Hemicellulose Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Phyllachorales;genus:Verticillium;species:Verticillium albo-atrum; 8.963215073 8.965322071 8.751461089 8.848900773 9.000792651 8.862400712 9.135078335 9.157399677 254986413 cytochrome Energy process Energy process Geobacter sp. M18 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 9.2344649 9.10470364 9.380482416 8.538757398 8.755839289 8.690233212 8.49627487 8.437942175 8.4985208 8.513898867 8.777368708 8.684221113 126649434 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bacillus sp. B14905 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.808521175 7.899092149 8.198803433 7.457939391 7.826971701 7.605199544 7.45248615 7.97883292 7.551541229 46917326 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.628346859 8.343003736 8.792624838 8.63955833 8.602526608 8.382998585 8.797067389 8.504588925 8.82112552 8.966892641 8.379729708 159040741 catB Organic Remediation Aromatics BTEX and related aromatics Caldivirga maquilingensis IC-167 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Caldivirga;species:Caldivirga maquilingensis; 7.106975902 7.047981345 7.240679274 6.998805119 6.751344713 7.402050833 7.021254738 6.937130976 6.791945628 18034155 APS_AprA Sulphur adenylylsulfate reductase Desulfonatronovibrio hydrogenovorans superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfonatronovibrio; 8.62844576 8.262626702 8.708671967 8.190916717 7.915703174 8.001147933 7.913999228 8.030287489 8.105064516 110336270 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 8.187376966 8.309131833 8.255367986 8.399816613 8.518362924 8.508814771 8.636982366 8.466442386 8.685006984 8.710709144 8.656853809 67783103 aclB Carbon cycling Carbon fixation Chlorobium limicola DSM 245 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium limicola; 9.91929737 9.835806896 10.0523116 9.136092052 9.175482925 9.152437951 9.002269833 8.808034328 8.946557629 9.16033255 9.129974987 9.482472884 62468050 bco Organic Remediation Aromatics Aromatic carboxylic acid uncultured bacterium superkingdom:Bacteria; 8.574627842 8.431031305 8.125096056 8.206786739 8.262906093 7.805766619 8.297991308 7.90513113 8.052324658 8.200227447 8.1557268 182633219 sigma_24 Stress Sigma factors Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 8.82471466 8.663792876 8.852141049 9.181444736 8.849862944 8.364630932 8.624109195 8.488490704 8.365049193 15899481 thioredoxin Bioleaching Sulphur Sulfolobus solfataricus P2 8.435668815 8.181857903 8.521082257 7.611319335 7.474470244 7.69093333 7.0031161 6.934029494 7.673343531 7.5922142 7.223924328 7.716747932 212993119 ChrA Metal Resistance Chromium Thermotogales bacterium TBF 19.5.1 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Kosmotoga;species:Kosmotoga olearia; 8.650080847 8.529179782 8.383520037 7.866137301 7.566056085 7.573985272 7.305665572 6.692525069 7.856746897 8.006116454 89191721 holin_type1 Bacteria phage LYSIS Sodalis phage phiSG1 8.059213607 7.845862111 8.185512656 6.953988834 7.073593596 7.693925828 7.430802125 7.671263041 7.400869464 7.007110972 7.378705374 150400770 CopA Metal Resistance Copper Methanococcus aeolicus Nankai-3 8.712617219 8.572799795 8.56871612 8.082228836 7.850614403 7.958537638 7.757491048 7.475346426 7.912270842 7.681501485 7.728954045 8.066850435 229916855 SMR_antibiotics Antibiotic resistance transporter Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 9.463503063 9.518748167 9.489755046 9.029378543 8.921165323 8.950337802 8.592601475 8.607708578 8.727217636 8.826989969 8.786705444 9.309972576 221069192 nmoA Organic Remediation Aromatics Nitoaromatics Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.254686704 8.608246474 8.664239801 7.835110213 7.73390356 7.894805377 8.431464427 7.907861825 8.233102494 7.839757841 8.080539902 7.769686265 126666920 gyrB other category gyrB Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 8.367249913 8.285817511 8.489409169 8.916249536 8.614375794 8.44382213 8.54152253 9.137243272 8.566890568 8.845449496 8.759657884 9.01203577 92910774 nagI Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 9.503883097 9.501112021 9.594321954 9.07299153 8.938881298 8.823969533 8.663393443 8.641905872 9.123039048 8.97136251 9.107645247 8.963369758 212707610 ppk Phosphorus Phosphorus utilization Providencia rustigianii DSM 4541 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 8.912230792 8.809493367 8.885103002 8.570706448 8.403309951 8.413973265 8.02208037 8.171521521 8.486239178 8.372943682 8.31916033 8.550034137 29466068 norB Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.702160892 9.539076701 9.485550883 9.40460258 9.624384309 9.591424126 9.256795051 9.464868492 9.24634588 9.450319474 9.717331304 9.421753533 217502415 sigma_24 Stress Sigma factors Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 8.171497342 7.838092509 7.641935371 8.378912889 8.184557248 7.847585349 7.859409638 7.76008926 145294517 alkK Organic Remediation Others Corynebacterium glutamicum R superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 8.226673099 8.094956964 7.583363524 7.230991946 7.000953559 7.34782756 6.90992903 7.321146771 7.585342685 7.492322211 89347563 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 9.635786015 9.68572508 9.638465201 9.262927216 9.176938211 9.017895261 9.180807286 9.115521945 9.351700239 9.371356038 9.394110516 83590677 sigma_24 Stress Sigma factors Moorella thermoacetica ATCC 39073 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Moorella;species:Moorella thermoacetica; 8.935909694 8.944601336 8.932927628 8.446952779 8.439796984 8.499503816 8.135551147 8.036229755 8.604447529 8.315810527 8.357079287 8.412746407 154299480 nagG Organic Remediation Aromatics Aromatic carboxylic acid Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 8.560417916 8.221712979 8.003765652 8.42914366 7.989905106 8.059083798 7.835889765 8.203301964 94264964 CopA Metal Resistance Copper delta proteobacterium MLMS-1 8.798866166 8.736225704 8.754563476 8.370944307 8.119066002 8.116387174 7.933855096 7.694687558 8.549134587 7.968345192 8.005132516 8.234851361 78093548 narG Nitrogen Denitrification uncultured bacterium 9.172692387 9.300527628 8.805883364 8.785120334 8.919199252 8.734710313 8.669331719 8.837269907 8.813737824 8.840936269 8.951776108 89893967 proV Stress Osmotic stress Desulfitobacterium hafniense Y51 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 9.111228689 9.047204061 9.15015715 8.842223786 8.731583978 8.715224577 8.265401354 8.46974334 8.476193292 8.639136551 8.813967254 8.687608699 227331951 cda Carbon cycling Carbon degradation Starch Citrobacter youngae ATCC 29220 8.760711563 8.68218761 8.949522235 7.919751467 7.905828576 7.767624336 8.179152513 8.361465628 7.878375657 7.641166 8.186803482 170723004 glnA Stress Nitrogen limitation Pseudomonas putida W619 9.220353875 8.903403715 9.060698128 8.917842836 8.749402775 8.580881727 8.751829725 9.227770925 8.796604502 9.002636741 9.12433424 9.132589474 83747593 proO Organic Remediation Aromatics Other aromatics Ralstonia solanacearum UW551 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 8.248053647 7.858709986 7.590299047 7.575581657 8.01073039 7.917150231 7.293442759 7.983789402 7.844055385 7.751270493 8.015345004 211905435 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.52821193 8.281208507 8.172916735 8.066332077 8.09153499 7.850466285 7.917227012 8.049652454 8.031171623 7.917898727 8.074141757 8.19234601 134135739 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 8.100464729 8.175564279 7.93626269 7.918443808 8.575743556 8.613430488 8.092266588 8.465471616 8.362428559 8.025103043 8.369449934 12484564 czcC Metal Resistance "Cadmium,Cobalt,Zinc" Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.607566436 8.284147056 8.38651405 8.026994563 7.934883328 8.124910884 8.006111695 7.726205971 8.387737513 7.904801189 7.945780756 8.024048494 154687729 ChrA Metal Resistance Chromium Bacillus amyloliquefaciens FZB42 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 8.788151288 9.023582626 8.414875193 8.16656676 7.980232145 8.515671487 8.93381966 8.287688048 9.040245604 8.574607863 8.565644625 8.837487478 88796385 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 8.512534167 8.401706778 8.380422013 8.072919718 8.328688661 7.405860938 8.33591772 8.248085853 8.078193552 8.170319939 7.955528012 170739274 fnr Stress Oxygen stress Methylobacterium sp. 4-46 7.94496026 8.242320894 8.104819119 7.760676993 8.378016865 7.75984031 8.019246524 8.262283971 8.595001272 257051995 pstC Stress Phosphate limitation Halorhabdus utahensis DSM 12940 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus utahensis; 8.897943842 8.68210742 8.835187956 8.069919225 8.096974508 8.25978284 7.988600821 8.336499775 8.229087447 8.173158591 8.052483337 8.438737726 39996885 cytochrome Energy process Energy process Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 9.320803798 9.236418636 9.477266058 8.521951087 8.255879736 8.302983784 8.152220526 8.184838506 8.347906991 8.483364224 8.556507996 8.6508515 225142176 AceB Carbon cycling Carbon degradation others Stenotrophomonas sp. SKA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 9.015002819 8.82647318 9.063611307 8.989038537 8.948705971 8.927250307 8.940457191 9.09844005 8.662655197 9.150065941 8.652403866 145239905 catB Organic Remediation Aromatics BTEX and related aromatics Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 9.091764655 8.795228226 9.183250571 8.317227768 8.158020515 8.073309451 8.138266972 8.310838887 8.0918883 8.3206166 8.638496144 120612989 pimF Organic Remediation Aromatics Aromatic carboxylic acid Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 8.623559519 8.63620287 8.94451997 8.086114484 8.100703377 8.328389135 8.043307795 8.056195781 8.009003998 8.087300084 8.218431875 8.366318551 50840126 gyrB other category gyrB Propionibacterium acnes KPA171202 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 8.492406775 8.233148049 8.216654086 7.943473234 7.711583898 7.639797939 7.26632732 7.429004765 7.757417171 7.629268108 7.642303031 152987780 CopA Metal Resistance Copper Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 9.606870588 9.574794179 9.25523541 9.228573918 9.268702397 9.539497089 9.714556323 9.545551368 9.794399391 9.175606475 9.228748147 9.095189795 156450799 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 8.330734967 7.971497888 8.197111513 7.480986837 7.669491537 7.835686271 7.757940745 7.419493342 7.756545715 7.535326144 7.72240005 260777262 endochitinase Carbon cycling Carbon degradation Chitin Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 8.277521677 8.085273813 8.460784346 7.923404331 7.768982315 7.833218053 8.169905693 8.247647002 8.181184921 8.259722003 7.950698192 8.171965621 42475470 bphC Organic Remediation Aromatics Polycyclic aromatics Rhodococcus rhodochrous superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 9.619111387 9.67780366 9.273058532 9.126402484 8.952581966 9.379318139 9.693706628 9.309217975 9.351598182 9.314688997 9.625421723 9.231068171 6002404 mmoX Carbon cycling Methane Methane oxidation Methylomonas sp. KSWIII superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomonas; 9.040341359 9.267392684 9.283065082 9.148636174 8.876642255 8.838074926 9.447065377 9.287209179 8.916262678 9.184042817 9.004289594 9.039998811 229851079 xylA Carbon cycling Carbon degradation Hemicellulose Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 8.755990592 8.781182197 8.86629529 8.868536934 8.557780403 8.474561121 8.440547786 8.719469214 8.694610526 8.937115383 8.94556405 9.032598173 237878217 fnr Stress Oxygen stress Burkholderia glumae BGR1 9.313032235 9.509966473 9.294247659 8.920098898 9.019161718 9.237024254 9.608000331 9.31864521 9.860119457 8.961520123 8.990885971 8.860261937 217160 rubisco Carbon cycling Carbon fixation Acidithiobacillus ferrooxidans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus; 9.017524114 8.356113227 8.348838888 9.299586488 9.182907066 8.726364251 9.219118707 9.105866008 8.698790222 8.807030149 8.823607348 219862123 merB Metal Resistance Mercury Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 9.509445572 9.644608992 9.467369322 9.56830413 9.63138857 9.26983311 9.583477606 9.897705215 9.543586787 9.812963299 9.607768506 9.743048095 170720044 iro virulence Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.809437976 8.95249327 8.601011836 7.766423131 8.445158929 9.077070965 8.677167915 8.279872161 8.268780904 8.037629391 144901070 napA Nitrogen Dissimilatory N reduction Magnetospirillum gryphiswaldense MSR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 8.168824714 7.968765519 7.874118966 7.984723512 8.094432408 8.590606282 8.205845231 8.120840123 8.063654654 8.248259789 8.196285263 283810591 sigma_24 Stress Sigma factors Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 8.64659061 8.64249945 8.526609576 8.228387207 8.404608805 8.441100563 8.689957303 8.370947344 8.454936584 8.484545436 8.540533738 8.250752739 27377941 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.561088076 8.564505972 8.748396039 7.815992414 7.668862576 7.619856317 8.10728576 7.671359044 7.62214797 7.653345242 127511450 cytochrome Energy process Energy process Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 8.394405361 8.616619123 8.118993866 7.86546601 8.088119905 8.418905353 8.717162588 8.36820456 8.738426801 8.372084501 8.25223253 8.452960476 146404456 sox Sulphur Sulphur oxidation Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.253217602 8.263062387 8.579687585 8.307254179 8.174374083 7.861858643 7.983439672 8.276444423 8.392332361 8.315422808 8.046212652 8.394068893 33620613 UvsW Bacteria phage REPLICATION Enterobacteria phage RB49 8.409150659 8.128930469 8.131628211 7.607257592 7.555815784 7.641485788 7.150948252 7.461743591 7.573310387 7.434419241 7.538824789 7.42659946 196477597 fnr Stress Oxygen stress Phenylobacterium zucineum HLK1 8.770473364 8.697091528 8.480993807 8.632955823 8.41259238 8.360650889 8.717829294 8.58697143 8.495604594 8.730114041 8.832452636 8.524791471 17738975 ppx Phosphorus Phosphorus utilization Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 10.5878221 10.28442891 10.29342545 10.12220822 10.02825921 10.02628818 10.23187795 10.05328367 10.51550862 9.955628148 9.918279176 9.935094632 76577384 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.686050183 7.996950636 7.857323157 7.781570611 7.856639422 7.965187607 8.079287032 7.994106234 7.585113446 242217049 ara_fungi Carbon cycling Carbon degradation Hemicellulose Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 8.736462183 8.541375814 8.661401466 7.982235872 7.892122358 7.715994199 8.011299727 7.724853558 7.988374995 7.936501631 7.656135547 8.065897955 50745940 CadA Metal Resistance Cadmium Gallus gallus superkingdom:Eukaryota;kingdom:Metazoa;phylum:Chordata;class:Aves;order:Galliformes;family:Phasianidae;genus:Gallus; 7.944610444 7.940578823 7.339025759 7.269129961 7.215916208 7.327360734 7.007604484 56178934 sigma_24 Stress Sigma factors Idiomarina loihiensis L2TR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina loihiensis; 8.721220301 8.33990509 8.556739197 8.44425185 8.417431267 8.625760166 8.380794294 8.42000499 8.534698082 8.678003816 8.270255432 269924576 sigma_70 Stress Sigma factors Brevundimonas subvibrioides ATCC 15264 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas;species:Brevundimonas subvibrioides; 8.952333785 9.06482873 8.839291115 8.369005973 8.861885946 8.759247454 8.438768601 8.478194277 8.488454496 225085216 AceB Carbon cycling Carbon degradation others gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 9.328082117 9.157185984 9.009885337 8.741260503 8.496657079 8.470770814 8.370302762 8.656578121 8.375962904 8.441152994 8.483640419 84786539 amyA Carbon cycling Carbon degradation Starch Erythrobacter litoralis HTCC2594 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 7.820339229 7.80664349 7.651396461 7.209776964 7.783299364 7.893081542 7.747202455 7.435410485 7.509442068 222149732 cap virulence capsule Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 8.087711592 8.11373294 7.752053457 7.566654455 7.944064476 8.070754713 7.443689931 7.233043029 7.351634858 7.663608368 99036536 sigma_24 Stress Sigma factors Ruegeria sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 9.40030978 9.200999253 9.358129998 8.227699446 8.83945247 8.757338147 9.190452745 8.118934765 9.005334632 8.480552795 8.882100309 8.341278559 172057602 gyrB other category gyrB Exiguobacterium sibiricum 255-15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 8.462236227 8.669289173 8.417795154 7.977561694 8.727338577 8.749628402 9.027720458 8.491024339 8.727662885 8.602466221 8.451543657 8.614702138 146192102 Catechol Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. ORS278 9.507444302 9.230380552 9.366865807 9.025132808 8.876457548 8.725486144 8.890077143 8.753131591 8.797484778 8.761561044 8.726724741 8.926192869 27373051 amyA Carbon cycling Carbon degradation Starch Lipomyces kononenkoae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Lipomycetaceae;genus:Lipomyces; 7.470987481 7.627814681 7.547348183 7.43008255 7.244442829 7.470095923 227524124 obgE Stress Radiation stress Lactobacillus hilgardii ATCC 8290 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus hilgardii; 7.086540262 6.679830616 7.062606025 6.890618109 7.001575038 198263971 ppx Phosphorus Phosphorus utilization Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 8.513620291 8.344633396 8.307757831 8.056471693 8.35865925 8.311966273 8.209178349 8.568237615 8.403335925 8.165099286 8.539138169 8.175770321 229791653 cda Carbon cycling Carbon degradation Starch Shuttleworthia satelles DSM 14600 8.902379792 8.791480985 9.022750547 7.954826924 8.211391167 8.006598036 7.872894584 7.877364739 8.095159525 7.823172782 8.002421765 8.365730292 188026284 CopA Metal Resistance Copper Providencia stuartii ATCC 25827 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia stuartii; 8.536656763 8.656122216 8.674202571 8.347356902 8.075661527 8.261519163 7.872313024 7.684572818 8.169149225 7.786816995 7.957404358 8.307946794 156235626 grpE Stress Heat shock Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 8.080821708 8.580234841 8.438097669 8.489695984 8.559633567 8.429960014 8.581864533 9.030803355 8.633343439 9.068699809 9.009053999 9.068952116 90409949 pilin virulence pilin Photobacterium profundum 3TCK superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 8.633259014 8.554219554 8.614819993 8.751231312 8.427320976 8.606036437 8.008649772 8.565885809 8.283200444 8.462877314 8.554278283 8.357234069 40745542 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 8.849577757 8.818156848 8.757324829 8.437913835 8.278440809 8.207164588 8.233277849 8.379906733 8.476363909 8.27974529 8.024924667 8.420665369 159046328 CopA Metal Resistance Copper Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 9.467604557 9.249644304 9.331159118 9.344064185 9.118869087 8.767238971 9.317472274 9.233879503 9.229075515 9.090518479 9.260571195 9.010178075 78046924 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Xanthomonas campestris pv. vesicatoria str. 85-10 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas euvesicatoria; 8.756972596 8.949822784 8.740291389 9.217384027 9.279748021 9.064613694 8.82623938 9.301621241 9.052452016 9.004523789 9.072712083 9.033356473 197698855 pulA Carbon cycling Carbon degradation Starch Streptomyces sp. SPB74 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.471171742 8.706612949 8.59735477 8.123934175 8.001181855 8.167821416 7.898973575 8.206544811 8.333304516 8.095551004 8.055964645 7.852014189 109897985 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 8.353361119 7.906332046 7.300941013 7.493169216 7.327013491 7.580634198 7.868762598 83313426 Arylest Organic Remediation Aromatics Other aromatics Magnetospirillum magneticum AMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 8.879140559 8.946947317 9.048445908 8.639465766 8.463285343 8.371904265 8.772955332 8.701477544 8.714894613 8.826433062 8.807541217 8.844021155 161485606 obgE Stress Radiation stress Desulfovibrio desulfuricans subsp. desulfuricans str. G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 8.440957284 8.97721066 8.643698865 8.366321039 8.201348228 8.572497826 9.08360672 8.347034108 9.027917229 8.484295505 8.56313558 8.688319044 195537599 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 9.095756948 8.891834094 9.110945771 8.357756662 8.221664162 8.339180453 8.382517195 8.251303941 8.507799062 8.476709179 8.493183533 8.559711579 108766117 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 8.824264644 8.44711082 9.033859257 8.532397909 8.484468488 8.388762553 8.04215542 8.405709927 8.482682994 8.185797743 8.26063155 8.269694702 110821793 atzD Organic Remediation Herbicides related compound Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.186662956 7.885447045 8.147358127 7.946545858 7.847307911 7.814671302 7.639148382 8.05939662 8.071250166 8.009438222 8.220493238 53758596 CopA Metal Resistance Copper Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 8.58798673 8.699239665 8.417430633 8.474278105 8.508994453 8.49178546 8.13940867 8.916124209 8.262015225 8.552555759 8.724616508 8.153681661 157368762 phn Organic Remediation Herbicides related compound Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 7.599842765 7.134604834 7.368920292 7.456060549 7.057568745 7.986933316 7.341806607 7.32287254 7.455615018 94312094 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.346643426 8.350497551 8.272473529 7.969939207 8.070835467 8.344774387 8.455619413 8.488666157 8.388113702 8.465760129 8.276469541 8.485650721 222454798 pstB Stress Phosphate limitation Halorubrum lacusprofundi ATCC 49239 8.757289354 8.708869033 8.787232144 8.39363564 8.12628042 7.963504084 8.190305983 8.534740507 8.353689781 8.360427427 8.147891646 8.328330161 15805125 obgE Stress Radiation stress Deinococcus radiodurans R1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 8.437692668 8.226926258 8.61813281 8.230785993 7.989543761 7.878339265 8.041946271 7.775395694 8.305770987 7.776732256 7.787794137 7.876494212 157837434 xlnD Organic Remediation Aromatics Other aromatics Chromohalobacter sp. HS2 8.592881094 8.388861155 8.548166413 7.924364317 7.703981955 7.76372367 7.529059315 7.477647413 8.019613916 7.537327465 7.528662745 7.829816237 37956516 gyrB other category gyrB Pelobacter acidigallici superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter; 8.668207449 8.741557618 8.866190538 8.219264445 7.689319629 8.164594303 7.872326802 7.643460733 8.009299442 7.956902181 7.932264591 8.205783974 119537097 CadA Metal Resistance Cadmium Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.533057374 8.742981861 8.729288581 8.938938664 8.814974911 8.60353714 8.74717086 8.955637027 8.658022417 8.891742727 8.897028308 8.604222333 218356383 benD Organic Remediation Aromatics Aromatic carboxylic acid Escherichia fergusonii ATCC 35469 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia fergusonii; 9.390948535 9.241752828 9.531498618 8.94734861 8.788325878 8.671824454 8.447217961 8.667679072 8.531989288 8.797447223 8.649665288 8.884672496 126730568 nagG Organic Remediation Aromatics Aromatic carboxylic acid Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 8.701568612 8.720597663 8.745078 8.955854316 9.021509185 8.826784941 8.56811957 9.059387103 8.597215574 8.887661735 8.59631099 8.805308958 126106097 sigma_24 Stress Sigma factors Rhodobacter sphaeroides ATCC 17029 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 9.10664991 9.087300147 9.079775222 9.021069514 9.070734853 9.172552597 9.203224946 9.389425014 9.273318305 9.236964859 9.138220283 82746480 amyA Carbon cycling Carbon degradation Starch Clostridium beijerincki NCIMB 8052 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium beijerinckii; 8.481436565 8.41367037 8.279440271 7.245496059 7.497545922 7.496004207 7.551364207 7.138681088 7.708406892 7.508206634 7.651897589 154702507 tfdA Organic Remediation Aromatics Chlorinated aromatics Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 8.040007998 7.679978273 8.063179532 6.472392742 7.200687811 6.785989967 7.456941814 119391495 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.267903247 8.345034784 7.724104291 8.019968721 8.162124726 8.189115648 7.906433324 8.53673015 7.921376758 7.865013024 8.167304623 108763751 sigma_70 Stress Sigma factors Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 8.11645774 7.937084994 8.318743397 7.776242929 7.658662191 7.824210904 7.550694989 7.968585259 8.036392599 8.314649873 8.242726352 8.420912522 32397436 phoB Stress Phosphate limitation Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 9.161432201 9.360017502 9.122649059 8.342701499 8.960944304 8.751064151 9.370923607 9.18644239 9.549352096 8.732835469 8.83575926 8.912429822 282906050 obgE Stress Radiation stress Staphylococcus aureus subsp. aureus Btn1260 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus aureus; 7.750482796 8.041429398 8.112809371 8.235748296 7.998188893 8.44258871 7.674563621 8.061347716 7.9028142 219863801 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 9.21377001 8.588900898 9.045527061 9.14566788 8.974218084 8.440029612 8.943263852 8.90454952 8.858648406 8.867218079 8.755158365 8.370696249 50875260 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Desulfotalea psychrophila LSv54 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfotalea;species:Desulfotalea psychrophila; 8.586890103 8.34480885 7.879820802 7.528350891 7.870649843 7.658460865 7.610847196 7.466934385 7.45781173 7.799915332 170720646 iro virulence Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.393673076 7.789415574 7.680963578 7.360722049 7.435181437 7.352805028 7.254602298 7.885394113 7.489595378 7.298895189 7.667347671 110633877 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 8.773233673 8.704855922 8.765537726 8.190232331 7.95407636 8.091514877 8.482104618 7.888591637 8.723555252 8.022253057 8.106150478 8.035311962 83952002 pstB Stress Phosphate limitation Roseovarius nubinhibens ISM 7.714070093 7.774575851 7.590710075 7.429688179 7.110479049 8.138019585 7.593715345 7.755292685 7.937845748 21225075 BADH Organic Remediation Aromatics Other aromatics Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.824467879 8.915131492 8.88797105 8.401820153 8.302562096 8.282301566 8.320642288 8.200408859 8.351376297 8.108195757 8.098254832 8.38772154 212558819 pilin virulence pilin Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 8.022072856 7.979141279 7.136878082 6.952632511 7.173458288 6.91854967 6.985017857 7.34978021 14521251 pstC Stress Phosphate limitation Pyrococcus abyssi GE5 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Pyrococcus;species:Pyrococcus abyssi; 8.545268869 8.818211847 8.715501306 8.248922735 8.196853237 8.076726853 7.996748923 8.061727586 8.227844309 7.992407719 8.240529956 119641162 dxnA Organic Remediation Aromatics Heterocyclic aromatics uncultured bacterium 7.983660869 7.960523506 7.482100863 7.474058211 7.439400454 7.205266761 7.12355853 7.670463347 7.361249902 7.293341627 7.320731937 226238141 B_lactamase_C Antibiotic resistance Beta-lactamases Rhodococcus opacus B4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 8.351169879 8.216999392 8.849212095 8.575717445 8.237620169 8.549594894 8.627199373 8.386609132 8.502434325 8.615824286 8.042429982 182411857 mannanase Carbon cycling Carbon degradation Hemicellulose Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 10.8535448 10.89980048 10.88263514 10.81418156 10.72797386 10.78238028 10.84238296 10.82263914 10.64175265 10.9446465 11.00713605 10.50919473 110337616 ppx Phosphorus Phosphorus utilization Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 8.129631441 8.017809261 7.416102947 7.441134047 7.668014576 7.746045846 7.479522635 8.002066692 7.576265481 7.735163906 7.644260666 84511437 CopA Metal Resistance Copper Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 9.493958514 9.766915959 9.56936523 9.912189335 9.939272734 9.972776728 9.624817806 10.14973864 9.581958073 9.875913438 9.893859055 9.775744974 254986326 ahpC Stress Oxygen stress Geobacter sp. M18 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 9.085902658 9.060776303 9.311387201 8.592796472 8.53110428 8.530957177 8.237739854 8.371898502 8.361872986 8.703956377 8.619949166 8.739203435 73539625 nagG Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 8.267467529 8.265733288 8.526964977 7.74321282 7.83329302 7.833935077 7.654088333 7.756971825 8.300140701 8.274249167 7.843892879 209517301 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.348995649 8.344496891 8.256119336 8.290115797 8.221004438 8.138469686 8.188144793 8.456551959 8.479219622 8.446828671 8.41865552 8.364254629 87331974 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 7.659948308 7.519476104 7.018037516 7.870085897 7.947192579 189218903 AceA Carbon cycling Carbon degradation others Methylokorus infernorum V4 superkingdom:Bacteria;phylum:Verrucomicrobia;order:Methylacidiphilales;family:Methylacidiphilaceae;genus:Methylacidiphilum;species:Methylacidiphilum infernorum; 9.009257496 9.033590206 8.621082569 8.439110719 8.560000259 8.461125698 8.441330278 8.554645145 8.607991222 8.70916575 8.586413156 227295570 cda Carbon cycling Carbon degradation Starch Clostridium thermocellum ATCC 27405 8.658143435 8.441332684 8.610715127 7.963110882 7.982782547 7.941870629 7.584257691 7.771774026 8.420066052 7.922623398 7.854800206 8.10517724 145236869 linC Organic Remediation Pesticides related compound Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8.719232101 8.811081003 9.012563157 8.156725411 8.088414841 7.998033534 7.899366738 7.709601648 7.97894058 7.940343896 8.384519487 85698642 iro virulence Nitrobacter sp. Nb-311A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter; 9.376780395 9.410789347 8.845845113 8.574338833 9.047142121 9.394149042 8.32329446 8.384978743 8.397686732 8.65802532 8.810599273 8.821560314 118048606 ChrA Metal Resistance Chromium Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 8.232788178 8.019977796 8.068206883 7.695364778 7.779722095 8.116053188 8.012540573 7.706894934 8.195622008 7.84674248 7.7966729 7.908066062 255037759 phoB Stress Phosphate limitation Dyadobacter fermentans DSM 18053 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 8.288041841 7.951570852 7.404058556 7.442606257 7.655595826 7.283870721 7.234048356 7.876225067 7.358843375 7.5437142 7.40436829 147744762 nasA Nitrogen Assimilatory N reduction Vibrio sp. 'A10 isolate-4' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.130527895 7.061376507 6.901463606 7.507837646 7.036370705 6.910980294 7.13100824 162072864 dsrB Sulphur sulfite reductase Halochromatium salexigens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Halochromatium; 8.275181027 8.643792121 7.836065548 8.198885595 8.439913209 8.606351665 7.981292924 8.469713776 8.061165059 8.376162622 7.905033319 229542082 fnr Stress Oxygen stress Bacillus coagulans 36D1 8.771937087 8.896385547 8.74748565 8.262218826 8.220741166 8.177637345 8.171387132 7.848062446 8.290121315 8.039482637 7.829252901 8.299577642 111023709 TerC Metal Resistance Tellurium Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.775547466 8.822522849 7.94476934 8.755433415 8.76663352 8.706806414 8.721807442 8.595360917 8.500805491 8.743428933 8.516162517 170290532 pstA Stress Phosphate limitation Candidatus Korarchaeum cryptofilum OPF8 9.302326879 9.27269792 9.119062955 8.806434773 8.677773088 8.364950197 8.399865198 8.515285425 8.211566104 8.613834224 8.54174173 8.701415146 49481225 hly virulence hemolysin Bacillus thuringiensis serovar konkukian str. 97-27 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus thuringiensis; 9.047693522 8.826676496 9.139459757 8.343813655 8.39693825 8.207599374 8.135754829 7.988344136 8.314639746 8.074364334 8.045348019 8.492955401 182636194 pstB Stress Phosphate limitation Beijerinckia indica subsp. indica ATCC 9039 10.60913969 10.24917558 10.19552327 10.27362836 10.44404019 10.72426581 10.24399738 10.83402059 10.14552666 10.69192232 10.75171846 10.89430436 33594989 cbdA Organic Remediation Aromatics Chlorinated aromatics Bordetella parapertussis 12822 8.430395335 8.265993867 8.516024007 8.024947665 7.943179026 8.045619535 7.704098127 8.222133104 8.184393645 8.277570435 7.971482404 8.09045654 227077127 pstC Stress Phosphate limitation Corynebacterium accolens ATCC 49725 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium accolens; 8.77869509 8.71583963 8.910941248 8.481102681 8.437360894 8.370530054 7.816280693 8.008506764 8.243284793 8.274079037 8.283599309 8.545672186 226941656 grpE Stress Heat shock Laribacter hongkongensis HLHK9 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Laribacter;species:Laribacter hongkongensis; 8.418510029 8.820389625 8.929077163 8.872572545 9.072969475 8.722421892 8.783351021 9.320116732 8.799217945 9.284219886 8.720295852 8.83060762 256687955 pstB Stress Phosphate limitation Kytococcus sedentarius DSM 20547 8.362404173 8.420845896 8.262482424 8.046419515 8.588970284 8.747512351 8.581070051 8.925457318 8.549485802 9.103639894 8.457964587 218129911 pcc Carbon cycling Carbon fixation Bacteroides eggerthii DSM 20697 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides eggerthii; 8.853832757 8.847209313 8.79445406 8.376175503 8.512580085 8.325348325 8.581127794 8.808455264 8.564815148 8.837069089 8.698864619 8.642072357 219946724 fnr Stress Oxygen stress Methylobacterium nodulans ORS 2060 9.167845625 9.372116841 9.249750607 8.671927089 8.635863733 8.507126317 8.335844812 8.313214206 8.65122185 8.405063064 8.37147023 8.781682434 214045453 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.117547493 8.120205562 8.159299175 8.06853572 7.954493657 7.730240248 7.634333858 7.974033337 8.073417706 8.536003792 8.178545129 283808642 sigma_24 Stress Sigma factors Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 9.794201795 9.835429068 9.759455403 9.598102888 9.540223509 9.380302319 9.753853694 9.448169623 9.363115777 9.705551289 9.633880077 9.67617149 166862752 ppx Phosphorus Phosphorus utilization Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 9.13835025 8.844860415 8.643444411 9.261969206 8.673657028 8.447710706 9.033198098 9.290758389 8.926012053 8.805900678 9.015634622 8.51987433 113900683 atzA Organic Remediation Herbicides related compound Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 9.016254677 8.372332333 8.513427276 8.76932281 8.465919806 7.691265172 8.509492073 8.551807276 8.936361029 8.273325159 8.371024761 7.919117703 166088242 CopA Metal Resistance Copper Microcystis aeruginosa NIES-843 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 8.286193358 8.067974917 8.762075993 7.706952566 7.419370444 7.380153502 7.133901545 7.873543033 7.609490706 7.251300313 7.505149922 206685528 proV Stress Osmotic stress Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.008318745 7.753979258 7.392093987 7.912182539 7.636894148 8.206970041 7.509302431 7.581544002 167946417 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Endoriftia persephone 'Hot96_1+Hot96_2' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Endoriftia;species:Endoriftia persephone; 8.754920447 8.606375658 8.782168998 8.293325059 8.368778024 8.319297317 8.136674831 8.387630966 8.314080738 8.229385113 8.438634276 150256554 CadA Metal Resistance Cadmium Victivallis vadensis ATCC BAA-548 superkingdom:Bacteria;phylum:Lentisphaerae;family:Victivallaceae;genus:Victivallis;species:Victivallis vadensis; 9.045959417 8.843098785 8.766496115 8.79215585 8.50255311 8.546237464 8.413023309 8.781607129 8.845503637 8.56640031 8.613741304 8.501796133 154148565 pstS Stress Phosphate limitation Campylobacter hominis ATCC BAA-381 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter hominis; 8.364374709 8.087598314 7.741018305 7.675729807 7.663743862 7.393336528 7.408683728 7.660283551 7.60204484 7.308242181 7.506083129 71065173 narH Stress Oxygen limitation Psychrobacter arcticus 273-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter arcticus; 8.664562016 8.605720328 8.300151342 8.94472479 8.926833382 8.84226799 8.63172511 9.062991694 9.056505218 8.834141918 8.609677924 8.479033259 212543621 katE Stress Oxygen stress Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 8.683373567 8.776511623 8.658376026 7.835977955 8.664966661 8.942363461 8.446945946 8.887936477 8.590453848 8.680593409 89068384 pimF Organic Remediation Aromatics Aromatic carboxylic acid Oceanicola granulosus HTCC2516 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 9.871677552 9.87483853 10.01413647 9.539148542 9.607361635 9.388253127 9.426015681 9.443799415 9.284538282 9.318882479 9.487405942 9.571076837 225156612 ara Carbon cycling Carbon degradation Hemicellulose Bifidobacterium pseudocatenulatum DSM 20438 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium pseudocatenulatum; 8.235931069 8.44340066 8.496196967 8.183892497 8.241851505 8.329276192 8.015026568 8.433574644 8.230888155 8.325829685 8.155765251 7.933372992 115377136 pstB Stress Phosphate limitation Stigmatella aurantiaca DW4/3-1 8.93351219 9.091041177 9.045755647 8.727697731 8.850653923 8.86734638 8.21504717 8.415518267 8.387638867 8.474642566 8.574887598 8.79337868 153799247 pnbA Organic Remediation Aromatics Nitoaromatics Actinomyces odontolyticus ATCC 17982 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces odontolyticus; 8.616807094 8.495830016 8.250017231 8.806180696 8.762377222 8.556213354 8.694426999 8.630875797 8.579068259 8.595047346 8.554842071 8.191901934 39933339 rubisco Carbon cycling Carbon fixation Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.486114432 8.411104278 8.698848907 8.128692578 8.232619882 8.025214873 8.020659929 8.379666068 8.205626351 8.318322556 8.378143911 8.343442731 220721651 mer Metal Resistance Mercury Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 8.332550455 8.389114632 8.233896499 8.430863866 8.131452438 7.934762156 7.987044531 7.942798195 8.427293617 7.853521292 7.781811518 8.076132244 253778278 cda Carbon cycling Carbon degradation Starch Thermoactinomyces vulgaris 8.884535822 8.875311629 9.070029469 8.261038171 8.172463541 8.144627957 7.832301508 7.955448058 8.3573082 8.062210966 8.097617455 8.3228117 108803226 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 8.686411397 8.81741148 8.72695036 8.458169147 8.602625764 8.599140447 8.458723475 8.423056592 8.600248537 8.187724328 8.114333904 8.303473186 14495294 nicdehydr Organic Remediation Aromatics Heterocyclic aromatics Arthrobacter nicotinovorans superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8.61178449 8.518825099 8.313993748 8.763936629 8.300831214 7.911049383 8.384829031 8.554992896 8.417559196 8.222291409 8.066449368 8.088450971 41407007 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 8.729667037 8.882743626 8.267048261 8.447191226 8.054738053 8.613517146 8.722580956 8.574076273 8.756416327 8.519158977 8.67112791 8.730502734 209522992 clpC Stress Protein stress Arthrospira maxima CS-328 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira maxima; 8.904150807 8.55074968 9.072442283 7.957745667 7.925722988 8.089564791 8.012938392 7.890843126 8.017738674 7.833998962 7.693572424 8.143840554 6460890 nagG Organic Remediation Aromatics Aromatic carboxylic acid Deinococcus radiodurans R1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 8.895799563 8.300903507 8.39397142 8.007831285 7.98495173 7.783242659 7.701120113 8.147285194 7.792735255 7.822660833 7.55617732 37527863 arcB Stress Oxygen limitation Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 8.946753701 8.752468068 9.040671015 8.091261932 7.979842836 7.996263371 7.881011075 7.773567814 8.187634384 7.724229428 7.717819087 8.295414465 259171718 pstC Stress Phosphate limitation Erysipelothrix rhusiopathiae ATCC 19414 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichi;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Erysipelothrix;species:Erysipelothrix rhusiopathiae; 7.891578003 7.923192351 7.176857561 7.224684757 6.792804648 7.426057497 24421289 nirS Nitrogen Denitrification uncultured organism 8.095168091 8.070975128 7.457866709 7.803634258 7.640464006 7.686899128 7.626665434 7.527855118 7.75579999 145322730 bphA Organic Remediation Aromatics Polycyclic aromatics Novosphingobium aromaticivorans DSM 12444 9.625823763 9.644585648 10.00114571 8.868905987 9.03016359 8.985833941 9.190547621 8.983975331 9.210685062 8.90442022 8.985953238 8.815509159 87331870 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 8.724187176 8.553180509 8.785479984 7.937054248 8.003021991 8.371942831 8.162146322 8.080053495 8.482572602 7.885568434 8.282123933 8.625442225 260438094 glnA Stress Nitrogen limitation Butyrivibrio crossotus DSM 2876 9.120505229 9.009409836 8.632110418 8.527603247 8.312415356 8.460044556 8.263245344 8.405042248 8.559084961 8.443389263 8.530173507 8.832740243 125628981 amoA Nitrogen Nitrification superkingdom:Bacteria; 8.637552331 8.896658335 8.492720066 8.081947074 8.314525071 8.407974657 8.599224032 8.578764959 8.456759044 8.9611625 8.90169011 8.773550417 87136275 fnr Stress Oxygen stress Novosphingobium aromaticivorans DSM 12444 8.587103636 8.763582936 8.37673632 8.388402834 8.123876488 8.389487803 8.646433131 8.198737344 8.760790039 8.22001668 8.188614537 8.367840245 168235581 dmsA Organic Remediation Others Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 8.158299392 8.439165456 8.302720523 8.059441934 8.435262563 8.450194324 8.78876608 8.52613262 8.385606793 8.55467649 8.73141301 8.827715267 151581714 ureC Nitrogen Ammonification Opitutaceae bacterium TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 8.202946105 8.208779575 7.152289681 7.520975649 7.650990172 7.896888419 7.431353801 7.139526186 85689806 CadA Metal Resistance Cadmium Erythrobacter sp. NAP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 8.645993838 8.29730692 8.444194973 7.898511868 7.644419422 7.625872756 7.767744918 8.145237898 7.757152262 7.863636508 7.917606848 218691889 pap virulence adhesin Escherichia coli ED1a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 9.048501407 8.808186099 9.161724752 8.456188433 8.328031983 8.421613093 8.099077467 8.132247548 8.583408678 8.155483942 8.097987522 8.434437113 283779933 sigma_70 Stress Sigma factors Pirellula staleyi DSM 6068 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Pirellula;species:Pirellula staleyi; 9.40273905 9.288506204 9.029855551 9.592282659 9.353385725 9.281083371 9.706640799 9.528467302 9.444859979 9.459255372 9.387932371 9.376307409 23494147 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium efficiens YS-314 8.96370458 8.915816549 8.69676237 8.885163387 8.951566927 8.605141006 8.949881529 9.277793955 9.021534687 9.058741999 8.758062355 8.78970072 118471936 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.773227586 8.551219984 8.036016258 8.243023035 8.36003794 8.011745797 8.183684815 8.580223498 8.575536075 8.449716012 8.506913253 8.566862646 161388787 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Phaeobacter gallaeciensis BS107 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 8.588133804 8.576370326 8.458433719 8.826416115 9.028245228 8.804995212 8.396292398 9.08392249 8.501890792 8.690760662 8.330679436 8.795533314 213952245 clpC Stress Protein stress Corynebacterium amycolatum SK46 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium amycolatum; 8.361897071 8.032441675 8.535276521 8.097061065 7.650775589 8.257203805 8.231588067 8.152900937 8.514364945 8.31590801 7.779181424 127511457 cytochrome Energy process Energy process Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 9.162993892 9.292947426 8.948134618 8.86293793 8.906388137 8.890960501 9.180210961 8.771108721 9.284697137 8.941539891 9.082164256 8.983561008 90418452 pstB Stress Phosphate limitation Aurantimonas manganoxydans SI85-9A1 8.480478711 8.410142185 9.211018492 8.236197396 8.077137729 8.042193601 8.170699042 8.028921858 8.413960462 7.96826062 8.167154904 72161781 AceA Carbon cycling Carbon degradation others Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 10.18266875 10.14666413 10.14594948 9.49483744 9.233699244 9.407242257 9.493731691 9.401450533 9.585807509 9.678051158 9.740565629 9.648615195 222054114 cytochrome Energy process Energy process Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.944680802 9.057105182 9.300458656 8.929847687 8.468815788 9.309209767 9.218502302 8.808522944 8.857492347 8.68991773 84515923 sigma_32 Stress Sigma factors Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 9.177446407 9.136607491 9.083919064 8.771462396 8.525111985 8.204569542 8.740949168 8.859908192 8.595474894 8.471126156 8.760348012 94310049 iro virulence Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.545284239 8.812771727 8.734911286 8.049592106 8.27069886 8.415180415 8.461429392 7.696837547 8.678458735 8.114431958 8.083751151 8.42874942 158107624 pstB Stress Phosphate limitation Frankia sp. EAN1pec 8.265164166 7.97281465 8.107826569 8.023378526 7.845751996 8.257243302 7.663482587 8.046172149 8.033122873 8.073462317 8.032743245 8.118606201 85543754 arhA Organic Remediation Aromatics Heterocyclic aromatics Novosphingobium sp. phe-8 8.701857483 8.752751037 8.696465901 8.107980161 7.95841239 8.000605035 8.033655936 8.27165601 8.229872628 8.27261332 8.199215652 8.363181484 86 CODH Carbon cycling Carbon fixation 9.177964412 9.311732245 9.456155067 8.915387264 8.815556409 8.996798947 8.452287917 8.897594786 8.541752022 8.825665805 9.192544459 8.942848991 732513 mnp Carbon cycling Carbon degradation Lignin 8.028313181 7.671904691 7.381922503 7.46037265 7.935555772 7.981945083 7.817043767 7.382199517 7.435683266 218755063 pcc Carbon cycling Carbon fixation Mycobacterium tuberculosis GM 1503 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 8.38533015 8.405455214 7.939543423 7.825252002 7.708008862 7.646720673 7.625552706 8.192814403 7.489848375 7.543454977 7.883109621 68535364 clpC Stress Protein stress Corynebacterium jeikeium K411 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 9.126966878 9.250764274 9.293591299 8.787228101 8.429916823 8.664385581 8.578953359 8.783998679 8.811792541 8.94614355 8.830629321 8.889730707 27375227 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.172464702 8.138036686 7.359853708 7.952727124 7.979081146 7.377837537 7.812403337 7.627281525 7.735691713 157285572 narG Nitrogen Denitrification uncultured bacterium 8.979970359 8.371074141 8.793353112 8.333660811 8.350212952 8.524477223 8.744618922 8.175303619 8.512944338 8.127024742 8.291245019 8.253556982 188996746 ppx Phosphorus Phosphorus utilization Sulfurihydrogenibium sp. YO3AOP1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Hydrogenothermaceae;genus:Sulfurihydrogenibium; 8.14900941 7.820067399 7.335597496 7.384558689 7.154373866 6.745666321 7.657391984 7.083227427 6.832352379 110286408 groEL Stress Heat shock Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 8.559689179 8.545128012 8.212075568 7.945514677 8.872147065 8.726954356 8.687912519 8.803596832 8.734090789 9.189972355 8.802034979 88703471 pstB Stress Phosphate limitation Congregibacter litoralis KT71 8.320541357 8.581014816 8.493683318 8.601583834 8.231251932 8.89612072 8.714831903 8.704795365 8.526225763 8.405118945 146192230 sox Sulphur Sulphur oxidation Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.70009674 8.380661868 8.398605591 7.986755844 7.648872649 7.628469694 7.911567154 7.68513659 7.528775927 7.800325508 7.335143053 78697312 tftH Organic Remediation Aromatics Chlorinated aromatics Bradyrhizobium sp. BTAi1 10.49631159 10.31735331 10.28089968 9.352277505 9.280053122 9.961184222 9.366925352 9.943513627 9.420419449 9.717267637 9.4094102 187927024 fnr Stress Oxygen stress Ralstonia pickettii 12J 8.484614664 8.149352005 7.727440784 7.729743592 8.154842735 8.217073043 7.864229353 8.101610434 8.042563066 8.193523221 7.777386698 85705219 sigma_70 Stress Sigma factors Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.539293751 8.38740055 8.776755615 8.588496666 8.36167632 8.068373524 8.25601549 8.452039525 8.561938943 8.341589147 8.287901876 8.428821717 193225755 cap virulence capsule Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 8.694908157 8.83933854 8.438061935 8.494250235 8.487064052 8.579071803 7.934236961 8.451479644 8.018473705 8.534325717 8.789214268 8.559745277 119946058 pstA Stress Phosphate limitation Psychromonas ingrahamii 37 8.465143229 8.200694508 8.292729183 7.800752453 7.803723514 7.664472088 7.64480812 7.856244201 8.186395108 7.834911573 7.79867892 7.817171686 91693341 bphC Organic Remediation Aromatics Polycyclic aromatics Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.160929869 8.125727508 7.311122132 7.605272832 8.10421476 8.185364985 7.902350375 8.305754259 7.535298203 7.565264036 7.694508711 15964516 oxyR Stress Oxygen stress Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 8.619825674 8.313059177 8.180708173 8.401899781 8.325083149 8.164947461 8.072846823 8.204606361 8.369035556 8.301851194 8.254762439 218887252 silC Metal Resistance Silver Desulfovibrio vulgaris str. 'Miyazaki F' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 9.005037825 8.69925655 8.960114697 8.563923995 8.500193564 8.331969812 8.449845992 8.51887049 8.443809721 8.544536641 8.365874604 8.233281119 4097317 rubisco Carbon cycling Carbon fixation Hydrogenophaga pseudoflava superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hydrogenophaga; 8.265824232 8.363334079 8.581375571 7.456999971 7.856190222 8.189113084 8.613858551 7.119724765 8.668296405 7.769513589 7.645967349 7.901831442 229362365 SMR_antibiotics Antibiotic resistance transporter Pseudomonas fluorescens SBW25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 9.326419092 9.147084629 9.210461887 8.431113121 8.707927356 8.901570936 8.858387704 8.485120093 8.713499352 8.757041947 9.136257714 8.802609394 39648482 ALN Organic Remediation Others Rhodopseudomonas palustris CGA009 8.976330321 9.053349398 8.903322427 8.378216634 8.469471526 8.515075148 8.589222415 8.397304522 8.704513714 8.656346221 8.802963397 34581415 pcc Carbon cycling Carbon fixation Rickettsia sibirica 246 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales;family:Rickettsiaceae;genus:Rickettsia;species:Rickettsia sibirica; 8.974647744 9.017316572 9.052540241 8.369319736 8.411801646 8.4306992 8.432266976 8.415775457 8.285046615 8.593204965 8.354013668 8.940408445 196482346 tfdA Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 9.199908453 9.103756993 8.770800788 9.111690122 8.852956615 8.880007378 9.00472534 9.000051187 9.14110803 9.196027673 9.195898202 9.076713124 112358843 nbz Organic Remediation Aromatics Nitoaromatics Rhodococcus aetherivorans 8.509690338 8.096885824 7.970843673 7.826803803 7.960777107 8.038838894 7.913474905 7.998976157 7.904802658 7.818455213 7.789160832 28870754 B_lactamase_C Antibiotic resistance Beta-lactamases Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 8.366396515 8.462943011 8.339088083 8.298979958 8.126148561 269836761 obgE Stress Radiation stress Sphaerobacter thermophilus DSM 20745 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 8.549658101 8.451355849 8.785959295 8.467403484 8.284481903 8.120198229 8.075701618 8.22375303 8.3795984 8.233296902 8.030001376 8.153877831 209535597 Catechol Organic Remediation Aromatics Other aromatics Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 9.458510314 9.312726899 9.469290943 8.95857657 8.749155613 8.897492272 8.901589754 8.43215209 9.148615581 9.256091591 9.129508571 23978233 gyrB other category gyrB Anabaenopsis circularis superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaenopsis; 8.543193944 8.510738225 8.620214975 8.205697949 8.00496116 8.213708217 167766547 bco Organic Remediation Aromatics Aromatic carboxylic acid Clostridium sp. SS2/1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 7.056265153 7.806542849 7.775324693 7.786008886 154686168 xylA Carbon cycling Carbon degradation Hemicellulose Bacillus amyloliquefaciens FZB42 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 8.357293919 8.179966414 8.241533003 8.200437741 7.88779547 8.400565214 8.167643555 8.428548108 8.310533927 8.342273428 8.373465967 8.418564073 262335159 sigma_24 Stress Sigma factors Rhodothermus marinus DSM 4252 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 8.404389302 8.636418805 8.327048723 7.564096888 7.624300563 7.955575062 8.281390682 8.002170848 7.924917421 8.062784181 8.06633236 8.157738276 34496765 B_lactamase_C Antibiotic resistance Beta-lactamases Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 8.58521708 8.719395105 8.720986569 8.865085696 9.086820933 9.010421486 9.071829065 9.325370875 8.76283099 9.382857677 9.273728998 9.133463167 157284130 napA Nitrogen Dissimilatory N reduction Sulfurimonas paralvinella superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Sulfurimonas; 8.826208396 8.410412866 8.993035869 8.467167108 8.363910867 8.389960902 8.098350107 8.320903608 8.334341899 8.23943743 8.362179985 8.186883333 160361808 fnr Stress Oxygen stress Delftia acidovorans SPH-1 9.059542157 9.165201999 9.065214944 8.665389351 9.005522459 9.084850401 8.735816931 9.036094627 8.795583812 8.796425815 9.129446725 8.859517017 206592155 mdlD Organic Remediation Aromatics Other aromatics Ralstonia solanacearum IPO1609 8.215824921 8.336076965 8.25525261 7.988313506 8.052413888 7.811631992 8.33382841 8.05507967 8.276916162 7.932596047 8.300032124 189466789 ChrA Metal Resistance Chromium Bacteroides intestinalis DSM 17393 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides intestinalis; 8.261174008 8.070079767 8.09951875 7.632035733 7.20305183 7.473722901 6.805098476 6.721643552 7.628036494 7.281374924 7.093004437 6.963650212 229761813 AceB Carbon cycling Carbon degradation others Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 9.260981795 9.319643663 9.312262965 8.834600606 8.894241644 8.860691598 8.734620219 8.966682666 8.738200846 8.907643123 8.915770614 9.068207362 119955214 CadA Metal Resistance Cadmium Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 9.082045782 8.953489584 8.983963073 8.623941286 8.681030113 8.660518144 8.91337685 8.508743929 8.88255851 8.479261688 8.604998902 8.427717666 112802656 ZitB Metal Resistance Zinc Campylobacter curvus 525.92 8.681981767 8.271684402 8.791577545 8.55199972 8.458966644 8.678076894 8.596416324 8.506475044 8.362066875 8.745637821 8.111146468 91783086 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 9.414041232 9.14322636 9.1064803 9.164903367 9.059375512 8.82224499 9.229411132 9.070793107 9.352174329 9.080045351 8.861195034 8.950641849 209401600 narG Nitrogen Denitrification uncultured bacterium 9.869645954 9.811990895 9.745082932 9.283386423 9.170236911 9.175986057 9.151080708 9.140464412 9.239863854 9.27509996 9.37284736 9.482117103 63254328 nmoA Organic Remediation Aromatics Nitoaromatics Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 8.683781394 8.783110634 8.992097405 8.176217605 8.002210083 8.329145998 8.548459429 8.082669558 8.714185987 7.994682396 7.944333552 8.208520262 16078792 SMR_antibiotics Antibiotic resistance transporter Bacillus subtilis subsp. subtilis str. 168 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 8.481019122 8.21539824 8.043309039 8.125335384 8.192556556 8.051144721 7.851898872 8.047936077 7.863443826 8.315379903 7.798002876 189220113 TerC Metal Resistance Tellurium Methylokorus infernorum V4 superkingdom:Bacteria;phylum:Verrucomicrobia;order:Methylacidiphilales;family:Methylacidiphilaceae;genus:Methylacidiphilum;species:Methylacidiphilum infernorum; 8.087226272 8.099204451 7.306772885 7.022724283 118431463 CopA Metal Resistance Copper Aeropyrum pernix K1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Aeropyrum;species:Aeropyrum pernix; 8.503922258 8.341915836 8.474463301 7.641140581 7.536681662 7.434210304 7.246631915 7.089307936 7.733232638 7.482813986 7.328476812 7.725346477 157369230 TehB Metal Resistance Tellurium Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 7.946889425 8.106739586 8.143901218 7.286204251 7.406309408 7.485234484 7.573962038 7.165392656 7.715619448 7.754575729 7.382434879 7.716293869 170934232 pstB Stress Phosphate limitation Thermoproteus neutrophilus V24Sta 8.824462096 9.179498059 9.248727026 8.68237492 8.580872389 8.638466621 8.376152739 8.459657228 8.585866077 8.690404017 8.563560565 8.642246934 220935311 B_lactamase_C Antibiotic resistance Beta-lactamases Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 9.905183955 10.06220086 10.03541448 9.998440903 10.02615469 9.765971688 9.734528496 10.54577536 9.982850072 10.35219158 10.16040057 10.22200348 213926019 CopA Metal Resistance Copper Pseudomonas syringae pv. tomato T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 8.669937106 8.622255463 8.301155212 8.907229259 8.516106131 7.888699356 8.574044388 8.658868476 8.740379914 8.608528556 8.428357599 8.199561152 90424247 nhh Organic Remediation Aromatics Nitoaromatics Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.840303589 7.723783104 7.910968516 8.225684601 7.842330773 8.072794229 7.681534446 7.80614207 7.624410412 118473353 nicdehydr Organic Remediation Aromatics Heterocyclic aromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.614417156 8.875998551 9.14215699 8.295858294 8.477362073 8.620789875 8.832158205 8.396572946 8.621858333 8.50926445 8.857460791 254453358 glnA Stress Nitrogen limitation Octadecabacter antarcticus 238 9.327462546 9.226591904 9.610405631 9.338376984 9.173441642 8.893767431 9.341438172 9.794247715 9.117393349 9.734929732 9.397400016 9.623561783 224594926 fnr Stress Oxygen stress 'Nostoc azollae' 0708 8.175002642 8.074896786 7.434793782 7.352889066 7.359914139 7.180769924 7.151194738 6.983219588 126355178 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Pseudomonas putida GB-1 8.768166236 8.676770585 8.608590468 8.425622136 8.471085049 8.624976522 8.900435362 8.579334779 8.592600746 8.741985739 8.872143209 9.017399253 269216484 cydA Stress Oxygen limitation Slackia exigua ATCC 700122 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Slackia;species:Slackia exigua; 8.487668857 7.884989476 8.344093068 8.132042911 8.069925688 7.73015417 7.91811517 7.853303969 8.272978819 7.889103497 7.923063908 7.805299777 146310336 exaA Organic Remediation Chlorinated solvents Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 8.326778876 8.105169743 8.661644248 7.776694784 8.112024833 8.180396121 8.46438318 7.447468881 8.30031623 7.754437795 7.756702828 219952007 sox Sulphur Sulphur oxidation Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 8.72021863 8.642165602 8.53643708 8.340500953 8.778804299 8.92574549 8.673103823 8.595901903 8.836832596 8.293068634 8.588780277 8.322751219 58001390 sigma_32 Stress Sigma factors Gluconobacter oxydans 621H superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter oxydans; 8.48796159 8.474968503 8.570281911 8.456818887 8.466650442 8.378738439 8.535715123 8.612189731 8.491181102 8.910784397 8.782102611 8.726872508 144900025 obgE Stress Radiation stress Magnetospirillum gryphiswaldense MSR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 8.318125982 8.223950243 8.128858667 7.701345327 7.085127493 7.346888321 7.236449288 7.754738525 115377140 phoB Stress Phosphate limitation Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 8.461760652 8.305731683 8.263417265 7.956032864 7.521606091 7.71718704 8.208324943 8.327783664 8.050430122 7.857276568 8.22655956 113529104 bphC Organic Remediation Aromatics Polycyclic aromatics Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.738660072 8.74170879 8.422866498 8.047184772 8.226091423 8.575996335 8.537288306 8.273243024 8.383212908 8.279101475 8.524958381 8.136091271 255296427 srt virulence surface protein Rothia mucilaginosa ATCC 25296 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Rothia;species:Rothia mucilaginosa; 8.897204388 9.108971135 9.061076497 8.195713064 8.79154024 9.003424436 9.107500824 8.133880011 9.31549522 8.578003971 8.583952253 8.693125635 83950247 bclA Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 8.43373099 8.44821901 8.178898918 8.360303672 8.015718488 8.305501971 7.953127718 8.237945748 7.976660281 8.027586072 7.925667018 77820048 nirS Nitrogen Denitrification uncultured organism 7.386102705 7.568599441 259346928 glnA Stress Nitrogen limitation Silicibacter sp. TrichCH4B 9.708602649 9.531105127 9.47408364 9.284591149 9.27414147 9.143630661 9.359957115 9.191199752 9.262945864 9.401093998 9.435528577 9.16265806 55772530 pcc Carbon cycling Carbon fixation Thermus thermophilus HB8 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 9.884968237 9.737384823 9.903072263 8.714541257 8.943120402 9.037473983 9.465137937 8.921379261 9.585075596 9.039303147 9.091136903 9.16209923 83838665 hrcA Stress Heat shock Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 9.379160737 9.436062736 9.289506902 9.123303295 9.225284162 9.159847866 9.322511274 9.68818705 9.404469813 9.507667718 9.517502508 9.439123237 177842737 mannanase Carbon cycling Carbon degradation Hemicellulose Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 8.0785716 8.040941066 7.264087452 7.333538281 7.265475463 7.446852209 7.323100253 7.491852756 94498316 MFS_antibiotic Antibiotic resistance transporter Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.973567783 9.038299928 9.312929521 8.733116324 8.640101512 8.732307767 8.484874932 8.398851415 8.47468982 8.375362852 8.690191994 35210763 sigma_70 Stress Sigma factors Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 8.827274418 8.877281467 8.837945214 8.111955326 8.345028614 8.189896775 8.223412078 7.773567814 8.353776703 7.902512637 7.929320599 8.263037128 212686299 TerC Metal Resistance Tellurium Providencia alcalifaciens DSM 30120 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 7.988200521 8.086033179 8.147131234 7.622102619 7.724306922 7.352743369 7.134788622 7.05807485 7.413240535 187477037 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 8.612567145 8.835399469 8.691343225 8.602120924 8.726113867 8.559307778 8.848123361 8.910534374 9.135117416 9.244252917 8.958050922 8.939660157 192897532 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 8.494533173 8.433965478 8.488645512 8.730095791 8.788460501 8.615007928 8.432125391 9.101686197 8.335745443 8.725680455 8.35500867 8.62223555 42523290 alkK Organic Remediation Others Bdellovibrio bacteriovorus HD100 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 8.418867279 8.088953738 7.541275348 7.16089567 7.445500862 6.738686077 7.567726392 221734612 Tet Antibiotic resistance other Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 8.474629785 8.410360241 8.334275867 8.07299423 7.798939785 7.503693582 7.46653247 8.002191091 8.221855307 7.799307781 7.457933685 8.035331797 255105969 sigma_32 Stress Sigma factors Thalassiobium sp. R2A62 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Thalassobium; 7.91600007 7.987782745 7.518060957 7.701878732 7.423084501 7.336816225 7.564123625 7.708902126 7.480777305 7.628873271 7.84596728 169002272 CopA Metal Resistance Copper Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 8.390944604 8.568532049 8.698773218 8.089210293 7.907579475 7.794168906 7.677344648 7.618054496 7.977028673 7.997014207 7.648553918 8.034310774 91695964 obgE Stress Radiation stress Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 8.202351341 8.195558453 8.259263253 7.909751613 8.073554875 8.307031921 8.618670206 7.540559791 8.523828382 7.668616139 7.623021719 7.740973072 34102246 pstS Stress Phosphate limitation Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 8.212146883 7.977798058 7.840988299 7.842088832 8.18257901 7.925929654 8.062877044 8.186026884 7.970500436 8.154336448 7.915640491 261354639 mannanase Carbon cycling Carbon degradation Hemicellulose Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Phyllachorales;genus:Verticillium;species:Verticillium albo-atrum; 9.209081201 9.219537125 9.327889597 8.991158174 8.782104911 8.778841409 8.922660019 8.984572435 8.771792431 8.892664766 9.144131212 8.907619065 116507097 katE Stress Oxygen stress Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 8.902766464 8.593318643 8.593586406 8.770734995 8.624788602 8.426120772 8.729594079 8.774294414 8.491915753 8.723018984 8.977232823 8.286057492 122090545 hly virulence hemolysin Yersinia enterocolitica subsp. enterocolitica 8081 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 8.121220282 8.109110032 7.496888425 7.936151515 8.002189826 8.154060843 7.705638749 8.463943672 7.568450184 7.559331493 7.641030899 14021778 gyrB other category gyrB Mesorhizobium loti MAFF303099 8.780031536 8.437483905 8.466519686 8.243494706 8.153414729 8.023385115 8.138205081 8.108803719 8.071968963 153895952 CopA Metal Resistance Copper Halorubrum lacusprofundi ATCC 49239 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 8.577672222 8.327767176 8.506047001 7.599580487 7.853579306 7.818524333 7.787050415 7.515031239 7.57349147 7.692377016 221565704 sigma_70 Stress Sigma factors Geobacter sp. FRC-32 8.868342528 8.736958161 8.82828552 8.316683653 8.101202954 8.282289508 8.13761775 8.196911882 8.310058228 8.342250711 8.181532943 8.44973085 115491289 ara_fungi Carbon cycling Carbon degradation Hemicellulose Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 8.388846211 8.268041698 8.630888959 8.287575763 8.235879145 7.85523581 8.264987724 8.52833078 8.439284085 8.484773138 8.300555912 8.235444032 78355257 ahpF Stress Oxygen stress Desulfovibrio desulfuricans subsp. desulfuricans str. G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 8.27525145 7.946932825 7.21648236 7.246425918 7.285363766 6.839632841 7.412096165 7.077985343 7.082184967 58254840 srt virulence surface protein Lactobacillus acidophilus NCFM superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus acidophilus; 8.094542332 8.084818349 6.969124312 6.705745899 7.131883411 6.797392873 6.86533652 118759579 CDD Organic Remediation Aromatics Other aromatics Sphingomonas wittichii RW1 9.380576908 9.133058937 9.250717665 8.427887938 8.410303811 8.37581878 8.89775524 8.635356686 9.058862618 9.018533795 118567780 dsrB Sulphur sulfite reductase Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:Candidatus Ruthia magnifica; 7.230963742 7.359200963 7.16865261 7.07686411 7.573905783 7.271084546 7.156811766 139003249 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.519490407 8.704419176 8.04755064 7.909989587 8.008071598 7.394946769 7.165311558 7.496304691 7.353196886 7.983806147 139478563 mer Metal Resistance Mercury uncultured soil bacterium superkingdom:Bacteria; 9.305964288 9.838101509 9.403951559 8.540198531 9.193510037 9.8148027 10.12426686 9.571692996 9.767426916 9.243397976 9.440038072 9.558848219 108765314 sigma_38 Stress Sigma factors Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 9.725789599 9.726496476 9.609647753 78695260 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.58359295 8.553405342 8.505020429 8.539896066 8.4280564 8.222939036 8.2621481 8.712280815 8.665833136 8.632945558 8.745088714 8.663738257 108803396 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 9.569950283 9.465354871 9.31799421 8.907271093 8.843783647 8.913668104 9.222601146 8.816874206 9.248996484 8.838499225 8.984572275 8.921654149 83816128 obgE Stress Radiation stress Salinibacter ruber DSM 13855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 7.262990075 7.282031169 7.378048753 7.73758639 7.107133558 8.242286423 7.348108628 7.255324752 7.468340254 116619924 sigma_70 Stress Sigma factors Solibacter usitatus Ellin6076 9.949944595 9.920651729 10.1230772 9.388135321 9.257090691 8.988068881 9.294750468 9.359666491 9.466415432 9.413566685 9.513882368 9.542961035 197333065 pulA Carbon cycling Carbon degradation Starch Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.928595274 8.487080902 8.609302654 8.769520653 8.113997456 8.502003499 8.746489929 8.410912697 8.974553023 8.7803715 8.400279541 111220842 CDH Carbon cycling Carbon degradation Cellulose Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 9.351882484 9.462765061 9.479257025 9.53772953 9.499766115 9.355278238 9.53897646 9.743589765 9.954699734 9.84206565 9.900467562 9.575126757 145247738 katE Stress Oxygen stress Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 9.031406204 8.67151515 9.137376578 8.039048885 8.176489736 8.394194847 8.645178486 8.132026987 8.925752495 8.291415509 8.091015655 8.342163456 66474955 cmuA Organic Remediation Chlorinated solvents Hyphomicrobium sp. LAT3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 9.036125784 9.336907753 8.969914419 8.957617854 9.193952835 9.327330278 9.588542611 9.808716134 9.239042649 9.904172579 9.766197005 9.665529157 29652448 narG Nitrogen Denitrification uncultured bacterium 8.436653433 8.622675075 8.622237096 8.291173676 8.394817452 8.183373098 8.65830744 8.377250159 8.626329353 8.436573683 237653303 fnr Stress Oxygen stress Thauera sp. MZ1T 7.959803918 7.890376399 8.029494523 8.105376327 8.143267513 8.273062409 7.696285533 8.02699405 7.540721591 225873592 sigma_24 Stress Sigma factors Acidobacterium capsulatum ATCC 51196 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteria;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 7.559315366 7.563419317 7.507690894 7.438618171 7.619732343 7.751713694 15158555 vdh Carbon cycling Carbon degradation Others Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.706788164 8.996009574 8.48435374 8.065190699 7.796170765 8.035870902 8.041914314 8.05474173 8.352298896 7.891794046 149360087 ahpF Stress Oxygen stress Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 8.828512825 8.504523814 8.100813279 8.016532599 8.482393911 8.260115856 8.115533498 8.638864173 8.35570014 8.470492138 8.278140915 167348678 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 9.510030846 9.648989043 9.445253973 9.110003896 8.88357601 8.812383542 9.066218514 9.008677829 8.773971417 9.145476629 9.107122324 9.217317741 84510386 ureC Nitrogen Ammonification Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 8.146244386 8.375552605 8.82593169 8.11833375 8.168242758 8.079283032 8.078052463 7.983830882 8.233502299 8.031181983 8.257087612 8.197301977 148256869 MFS_antibiotic Antibiotic resistance transporter Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 10.6673259 10.56589101 10.43094711 9.470201362 9.164130551 9.700719276 10.13159458 9.626012904 10.31120968 10.1084975 10.15859779 9.985446768 89094999 glnA Stress Nitrogen limitation Oceanospirillum sp. MED92 9.200793656 9.048177929 9.318290459 8.665510672 8.118978359 8.367568028 8.196749234 8.103235657 8.400501403 8.323350942 8.18511568 8.698756667 34541226 fnr Stress Oxygen stress Porphyromonas gingivalis W83 8.305073123 8.260572318 7.929061452 7.857897502 7.948014787 8.122706864 7.888299605 7.95655247 118003060 nagG Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.319627823 8.00996321 8.361555617 7.995774667 8.072113559 8.112136107 8.242631368 8.12062269 8.359802594 8.104929877 8.197038812 7.919399295 163855707 Catechol Organic Remediation Aromatics Other aromatics Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 8.595892408 8.823627523 7.784625574 7.898390261 8.339084196 8.574617091 7.789681846 7.819699387 8.222046093 170695085 amyA Carbon cycling Carbon degradation Starch Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 8.848756317 8.898233565 9.379507722 8.498178796 8.697411369 8.229764572 8.586149723 9.107742446 9.030025469 9.110145082 8.699318422 261337530 sigma_24 Stress Sigma factors Bifidobacterium gallicum DSM 20093 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 8.552969812 8.729450928 8.8421444 8.155555044 8.057185639 8.307079525 8.527246998 8.192391665 8.733578399 8.415286634 8.209714639 8.365369705 219850348 phn Organic Remediation Herbicides related compound Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 9.236270623 9.510179259 9.342224355 9.10728095 9.597953832 9.601283826 10.27727085 9.853496924 9.864478342 9.999362019 9.947264695 10.08130799 166085244 ppk Phosphorus Phosphorus utilization Microcystis aeruginosa NIES-843 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 9.391317561 9.43723468 9.376623319 9.145812608 8.809142902 8.403482218 9.244783032 8.655881885 9.111343904 9.34010832 8.799935744 225041745 obgE Stress Radiation stress Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 8.773007513 8.40254823 7.927672226 8.922859728 9.104196419 8.84970143 8.4378414 9.506616628 8.562073329 8.948524145 8.729940842 9.147848464 93357245 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.168388359 8.295335097 8.090800278 8.556182231 8.508632427 8.336975404 8.117328385 8.373082682 8.210595816 8.221980936 8.101055601 7.875454236 119386205 pcaG Organic Remediation Aromatics Other aromatics Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 9.157244638 8.24209304 8.482335798 9.040159353 8.762760458 8.615926243 8.979742249 8.865463007 8.576361071 8.86990614 8.722454889 8.598324022 78060255 chnB Organic Remediation Other Hydrocarbons Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 9.265496242 9.110286302 9.223198435 8.796756352 8.902897412 8.633539616 8.817942913 8.984164846 8.657161896 8.889557909 8.746264498 8.868752103 190997098 ChrA Metal Resistance Chromium Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 10.06145991 10.27051263 10.2790541 10.56803085 10.64121379 10.64062453 10.2452913 10.79640624 10.01252466 10.65613109 10.81852777 10.44294371 86139191 phtA Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 9.039433157 8.63069911 8.981912642 8.010212227 8.069671962 8.117889909 8.140428008 7.884067381 7.936801115 8.366584488 29366728 scaffold Bacteria phage STRUCTURAL Pseudomonas phage gh-1 order:Caudovirales;family:Podoviridae;genus:T7-like viruses; 8.192884876 8.050780896 8.198698235 8.22755288 7.807349163 8.262910013 7.973630489 7.971447572 8.086563631 8.086804977 7.845711994 171056839 CopA Metal Resistance Copper Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 9.03676936 8.928789293 8.758803084 9.018390727 9.068213174 8.846369019 9.087723195 8.989608448 9.071519089 9.093428781 8.99025667 8.692075019 84666915 ureC Nitrogen Ammonification Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.831936463 8.266184965 8.943814852 8.841425659 8.694002904 8.302585929 8.512799198 8.910493 8.685685108 8.846620911 8.614256398 8.848834273 117985751 phtA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.149613951 8.321665111 8.228438942 8.299084193 8.062360092 8.354626357 8.772693458 8.506117876 8.702918348 8.794704983 169760293 vanA Carbon cycling Carbon degradation Others Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.770025286 7.809522716 7.758253277 7.518330566 7.486360747 7.452004905 7.835390872 116193693 Catechol Organic Remediation Aromatics Other aromatics Chaetomium globosum CBS 148.51 10.05214672 9.668504424 9.69332792 10.00188227 9.829269978 9.361446239 9.731378367 9.911899154 9.880399567 9.707528718 9.640034962 9.730976593 148259412 H_transporting_two_sector_ATPase Bioleaching other category Acidiphilium cryptum JF-5 8.238500926 8.172745912 8.495016838 8.091255482 8.100734521 7.868732612 7.79089678 8.05260726 8.236386069 8.037170842 8.212416577 8.234488991 267984465 SMR_antibiotics Antibiotic resistance transporter Edwardsiella tarda EIB202 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella tarda; 8.634228712 9.032291238 9.087194753 8.322976142 8.5069383 8.261739535 8.08888219 8.289657128 8.593463775 8.211742522 8.218440875 8.338549949 258554372 narI Stress Oxygen limitation Nakamurella multipartita DSM 44233 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 8.483006451 8.647339884 8.624662734 8.047682971 8.339712977 8.433794292 8.212858054 8.23096094 8.436793237 7.680583276 8.138021803 7.859834525 163848926 hly virulence hemolysin Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 9.579154701 9.551436335 10.02465304 9.800329959 9.744868656 9.350852518 9.772594813 10.15155436 9.816361195 10.04468814 9.898947512 10.20559281 187725626 CopA Metal Resistance Copper Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 9.455845511 9.672063344 9.544965826 8.980011073 9.333442039 9.854243004 10.15480966 9.356162958 10.17403939 9.431413006 9.359720446 9.593655076 72161242 hrcA Stress Heat shock Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 8.945113211 8.466535298 8.865614296 8.326069267 8.047723498 8.14237493 7.885600249 7.944554871 8.11755912 8.067097166 8.097401896 8.123418664 42475466 bphC Organic Remediation Aromatics Polycyclic aromatics Rhodococcus rhodochrous superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 9.860790264 9.866275865 10.0971578 9.412958514 9.539335972 9.344890521 9.093331458 9.413211381 9.152604906 9.564469116 9.636122734 9.424737292 119671626 pstB Stress Phosphate limitation Azoarcus sp. BH72 8.384501028 8.713338265 8.482199139 8.158398621 8.017678263 8.36550529 8.535250494 8.208360107 8.604963035 8.177990626 8.046283929 7.925483686 257478607 pstA Stress Phosphate limitation Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 8.394967609 8.385344391 8.48042913 7.907234424 8.051559578 8.143420806 8.288839524 8.085442813 8.336349589 8.180831638 8.408833589 8.372790847 6689529 mer Metal Resistance Mercury Xanthomonas campestris superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas; 8.442013316 8.473014284 8.63155873 7.941150541 8.157545841 8.060425372 7.694728054 8.312283764 8.083790946 8.295156488 8.241407832 8.486515991 197713089 glnA Stress Nitrogen limitation Streptomyces sviceus ATCC 29083 9.323662978 9.200067878 9.010797215 8.453934626 8.69722894 8.784278379 8.300697894 8.837853025 8.844000058 8.974068563 8.929006808 113524810 gyrB other category gyrB Ralstonia eutropha H16 8.734485022 8.630077642 8.732985169 8.408680637 8.386241907 8.176764239 7.986769818 8.05806568 8.43748973 8.202552688 8.248510185 8.336120481 115260447 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.665903399 8.519566858 8.361044651 7.827542158 7.736995397 7.918353662 8.316999441 8.038649109 8.642031973 8.033308557 7.866285257 8.098453393 85710072 gyrB other category gyrB Erythrobacter sp. NAP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 9.040154162 8.295461637 8.707922385 8.765117986 8.649512661 8.631321031 8.721179768 8.610987214 8.324819757 8.310632665 8.277229365 8.181632581 46307958 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.051935258 7.904405178 8.258601052 8.063562354 8.385906706 8.346860935 8.22046873 8.706416803 8.269643985 8.630701774 8.68251353 8.626919117 226947154 hly virulence hemolysin Azotobacter vinelandii DJ superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 8.607386081 8.91937047 8.293505464 8.909380504 8.985630803 8.968400304 8.973033692 8.882763057 8.974837685 8.831133489 109455207 sigma_70 Stress Sigma factors Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 10.31271316 10.13204499 9.856403126 9.852335995 9.980270898 9.955512613 9.421452443 9.929511451 9.89796061 9.891978577 10.31176154 9.794460054 220916076 nrfA Nitrogen Dissimilatory N reduction Anaeromyxobacter dehalogenans 2CP-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 8.202546045 8.047295546 8.233041936 8.159149943 8.140823323 7.765296942 8.055398595 8.488337357 8.401696349 8.453250632 8.452849763 8.605860216 156532940 MFS_antibiotic Antibiotic resistance transporter Enterobacter sakazakii ATCC BAA-894 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 8.789694621 8.94449335 9.050371757 8.515727542 8.412116163 8.705614722 8.776432354 8.597483113 9.030493233 8.5714925 8.549375167 8.506896083 21243112 atzA Organic Remediation Herbicides related compound Xanthomonas axonopodis pv. citri str. 306 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas axonopodis; 9.569059928 8.475792763 9.150551324 7.636755854 8.175562156 8.439632811 7.388220697 8.689100763 7.999004605 8.357755491 8.231649804 146408720 nagG Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.259397492 7.288065888 7.718840079 7.353623918 7.406135203 7.864300396 29466024 norB Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.689559642 8.44340066 8.694768176 7.883367168 7.835421711 7.995345837 7.976566056 7.329736356 8.040545717 7.803193688 7.58719433 7.735661401 219939174 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.752864111 8.949283429 8.600972452 9.073979079 9.08574834 8.776246712 9.308726178 9.216140378 8.955175043 8.90686392 9.183783833 8.947633277 46124711 katE Stress Oxygen stress Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 9.086716023 8.536556337 8.833145073 9.100861957 8.964843807 8.498248379 8.841678945 8.357395946 225160339 fnr Stress Oxygen stress Clostridium hylemonae DSM 15053 8.253875368 7.737328684 7.352566527 7.018476757 7.202218624 6.994243596 6.65708484 7.421427617 6.903395815 7.543657984 145242996 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.873757501 7.707593015 7.934195764 6.94769319 6.977814613 6.93143632 6.649904441 7.475615101 229373546 ahpC Stress Oxygen stress Helicobacter bilis ATCC 43879 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter bilis; 9.644708239 9.557755076 9.680332112 9.100320206 9.10822379 9.207723753 9.145973511 9.42962465 9.713230154 9.853669059 9.400456617 119374842 CadA Metal Resistance Cadmium Paracoccus denitrificans PD1222 9.216457408 8.985941838 9.272510217 8.578861864 8.702612532 8.611438119 8.666567094 8.691068127 8.966235663 8.53820967 8.476350796 8.64285863 37924797 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.448580017 8.491104474 8.716603462 7.899907686 7.657835856 8.090343376 8.099217387 7.660639581 8.0900211 7.99666135 7.998235253 7.833826308 258560971 proX Stress Osmotic stress Corynebacterium genitalium ATCC 33030 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium genitalium; 9.094875571 8.922046797 8.982943564 8.538195081 8.473148279 8.382989453 9.078682384 8.547342519 9.184337345 8.668841614 8.577333839 8.739591628 2196846 gyrB other category gyrB Shewanella sp. DLM-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 8.408235437 8.324372616 8.395414675 7.908844255 7.763871529 7.61721317 7.302652219 6.891854187 7.837331012 7.523132001 7.49375678 89047001 hrcA Stress Heat shock Oceanicola granulosus HTCC2516 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 9.309406192 9.529949907 9.610574261 9.617924083 9.634381242 9.682146794 9.765858162 10.010165 9.464455662 10.09321382 9.877343476 9.621133376 262335071 obgE Stress Radiation stress Rhodothermus marinus DSM 4252 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 8.036741145 8.080212881 7.751620761 7.818030218 7.807856611 8.054384681 7.529128014 7.676284306 7.847757616 124899741 SMR_antibiotics Antibiotic resistance transporter Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 9.612143688 9.158553135 9.245908777 8.958526099 8.869185762 8.972787695 8.531289425 9.487087616 261338438 ppk Phosphorus Phosphorus utilization Bifidobacterium gallicum DSM 20093 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 8.563759505 8.607759047 8.506313926 8.697966606 8.729399664 8.456695503 8.547266599 9.044477152 8.486334798 8.655729274 8.77060216 8.830344071 209504214 pheA Organic Remediation Aromatics Other aromatics Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.449712508 8.699076309 8.566943806 8.219939603 8.384864655 8.515746879 8.632179229 8.65719633 8.735819176 8.435929544 8.626898719 8.363972707 120601642 pstB Stress Phosphate limitation Desulfovibrio vulgaris subsp. vulgaris DP4 8.735929421 8.578990674 8.315407899 7.434768003 7.576321113 7.602551396 8.071194933 7.625151197 7.481707236 7.331933569 8.076387526 167591763 fnr Stress Oxygen stress Heliobacterium modesticaldum Ice1 8.712980818 8.535793934 8.648513961 8.44926986 8.35446808 8.254236532 8.231916604 8.338033543 8.177959577 8.517449982 8.222832356 8.433600984 89275961 rubisco Carbon cycling Carbon fixation uncultured gamma proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.821822328 8.508328008 8.484818452 8.31220812 7.946273175 8.136078761 8.423915033 7.897312363 8.619990923 8.183774347 8.237800868 8.228758157 89160056 amyA Carbon cycling Carbon degradation Starch Halothermothrix orenii H 168 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Halanaerobiales;family:Halanaerobiaceae;genus:Halothermothrix;species:Halothermothrix orenii; 8.0380466 7.907691804 8.181897044 7.260407051 7.186842679 6.976208389 7.317553013 7.064447911 6.572731421 7.214061802 251774664 glnA Stress Nitrogen limitation Geobacter sp. M21 9.077227388 9.202260158 8.992507766 8.427166301 8.928226893 9.465551519 9.171131371 9.124544088 8.778361132 8.720177787 8.822925575 83955348 atzB Organic Remediation Herbicides related compound Sulfitobacter sp. NAS-14.1 9.15936969 9.064594249 9.253960811 8.615056799 8.465711661 8.409877828 8.410061384 8.346628483 8.534560878 8.468338624 8.69181444 8.570862326 221156336 AceB Carbon cycling Carbon degradation others Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 8.334722802 8.512708404 8.133740068 8.201111359 8.100998914 7.912985947 8.511332878 8.274131752 8.52984873 8.401985284 8.454272975 258518659 ahpF Stress Oxygen stress Cardiobacterium hominis ATCC 15826 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Cardiobacteriales;family:Cardiobacteriaceae;genus:Cardiobacterium;species:Cardiobacterium hominis; 8.929055609 9.437977536 9.110786306 9.645336382 9.726409434 9.428806678 9.816185172 9.924011859 9.547907057 9.979668003 9.533821108 9.574300584 55378251 ahpF Stress Oxygen stress Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 8.592463775 8.539963454 8.589113069 7.826583506 8.265145781 8.22781841 8.2041373 8.324443543 8.005572305 8.292988291 7.974456467 32443915 nitro Organic Remediation Others Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 8.790346719 8.646574325 8.761501103 8.689985724 8.633304958 8.705588194 8.540774841 8.968735266 8.729473748 8.965807762 8.808700723 8.812519073 113942145 endochitinase Carbon cycling Carbon degradation Chitin Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 8.682657831 8.948533141 9.255566622 9.330293055 9.526099432 9.085755664 9.170762733 9.319082896 9.109830011 9.247217629 8.949071091 8.600390812 221633372 bphF1 Organic Remediation Aromatics Polycyclic aromatics Thermomicrobium roseum DSM 5159 8.675305977 8.720975243 8.795353922 8.515216242 8.605339332 8.487237352 8.379100904 8.711894397 8.958677594 8.574433113 8.66669899 8.340386868 186472723 pcaG Organic Remediation Aromatics Other aromatics Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 10.13031329 10.13479647 10.0006808 9.337878636 8.615633754 9.671716431 9.729650764 9.287310781 9.645931915 9.467213113 9.639818459 9.464788741 192896492 nhh Organic Remediation Aromatics Nitoaromatics Streptomyces rimosus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.593429964 8.474150571 7.953363939 7.809207174 7.864160583 8.120768201 7.736449369 8.378733645 7.973439393 7.882884298 7.827484787 282577119 sigma_24 Stress Sigma factors Streptomyces sp. ACT-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.686458059 9.223996237 8.752832916 8.915613743 8.668354617 9.055661804 8.703965444 9.024818025 8.962478733 225684506 ara_fungi Carbon cycling Carbon degradation Hemicellulose Paracoccidioides brasiliensis Pb03 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides;species:Paracoccidioides brasiliensis; 8.422250237 8.475954728 8.737806782 8.396242742 8.345400329 8.154527656 7.933061816 8.160962275 8.208269933 8.038606245 8.021927573 8.247508729 140713603 nasA Nitrogen Assimilatory N reduction uncultured marine bacterium 8.801115489 9.057593352 8.89171618 8.780420256 9.004213493 8.899135613 8.86793874 9.465420034 8.742354933 9.112452189 9.07782796 9.083120127 50084866 pcaG Organic Remediation Aromatics Other aromatics Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 7.868161682 7.96076627 7.842586874 7.707679705 7.820086625 8.094834326 8.050226131 8.021948277 8.051367699 425214 bphF1 Organic Remediation Aromatics Polycyclic aromatics Pseudomonas sp. 10.61064638 10.32823847 10.34217976 10.0617373 10.16552593 10.1387275 10.59377742 10.45944208 10.59489671 9.736750035 9.911254053 10.13730763 214044141 sigma_24 Stress Sigma factors Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 9.093288037 8.797617374 8.693413433 8.660310288 8.705329548 8.440502118 8.803607395 8.673446023 8.960957544 8.736131644 8.834256426 8.516087788 145592737 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 8.663287023 8.966455729 8.574699891 8.41258768 8.731734762 8.889952952 8.90568841 9.105731652 8.923592246 8.758460729 8.717955567 8.676994663 187716020 ppx Phosphorus Phosphorus utilization Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8.514776507 8.559712769 7.630379148 8.53492426 8.098603669 8.37428341 7.886877748 8.687264722 8.198393898 8.168716326 8.136933453 85672202 nagG Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.870224726 9.286886505 8.684402147 8.600966612 8.976125115 9.094031393 9.544334068 9.151057003 9.330275776 8.860081497 9.253643947 8.99791889 218296496 AceB Carbon cycling Carbon degradation others Thermus aquaticus Y51MC23 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus aquaticus; 8.532202178 8.375863953 8.517427051 7.798512855 7.749088791 7.781258498 7.514091994 7.774673756 8.019831686 7.701993146 7.3378385 7.781844485 3157720 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 8.719077262 8.361464672 8.609154999 7.749157453 7.377267593 7.492421309 7.399829024 7.695092231 55231751 amyA Carbon cycling Carbon degradation Starch Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 8.760210133 8.952073454 8.435693041 8.414402679 8.699257862 8.910695224 9.257543919 8.904552802 8.772821288 8.808354269 9.239066644 9.040290059 148628316 cumA Organic Remediation Aromatics Other aromatics uncultured bacterium 8.330132214 8.308713691 8.602901337 8.139476281 8.111134357 8.085589899 7.886916438 8.331390378 8.10004954 8.162202109 8.169928725 8.036119608 219859237 glnA Stress Nitrogen limitation Arthrobacter chlorophenolicus A6 8.726822025 9.091292376 9.234632165 9.23621725 9.40754707 9.041675491 9.015601822 9.428795831 8.867170524 9.246042224 8.874140085 8.959347131 198264245 AmiE Organic Remediation Aromatics Other aromatics Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 8.807797888 8.749708747 8.816845743 8.246785209 8.399875003 8.377808194 8.27003718 8.423295916 8.038258629 8.451213824 8.410129778 8.530186581 15809255 rd Organic Remediation Chlorinated solvents Desulfitobacterium sp. PCE1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium; 8.193910868 8.135375014 8.231100067 7.647899872 7.328146308 7.308034776 7.397019586 7.355958976 7.610816639 7.178468573 7.120820379 7.644559682 167350934 pstA Stress Phosphate limitation Caulobacter sp. K31 9.000909002 8.87459113 8.746580993 8.593328286 8.392965072 8.926187954 9.173018815 8.826452991 8.818318054 8.74183347 8.738768262 8.703109484 88922410 pcaG Organic Remediation Aromatics Other aromatics Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 9.333148929 9.271653104 9.059178383 9.490224817 9.214412134 9.229070146 9.794567825 9.499163618 9.492604855 9.543097357 9.908476294 9.425570136 83647104 norB Nitrogen Denitrification Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 8.890203935 8.860756751 8.936996451 8.466483283 8.333850171 8.509084674 8.228513822 8.003211404 8.606606555 7.977523167 8.17471431 8.411203629 49237672 gyrB other category gyrB Bartonella henselae str. Houston-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella henselae; 8.613349149 8.456466444 8.84811704 8.223428306 8.132998657 7.874276778 7.755750226 7.81193178 8.208613476 8.260254703 7.923170192 270040980 obgE Stress Radiation stress Serratia odorifera 4Rx13 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia odorifera; 8.163800782 8.065165111 7.977216287 8.115256718 8.111147581 7.848628676 8.197009675 8.172169884 8.054775716 7.883217244 237718050 SMR_antibiotics Antibiotic resistance transporter Bacteroides sp. 2_2_4 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 9.015607361 9.103445017 9.185557601 8.281767735 8.471375924 8.53377603 8.762677953 8.515469706 8.655932113 8.26875631 8.174363219 8.756701265 16767843 ara Carbon cycling Carbon degradation Hemicellulose Geobacillus stearothermophilus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.378416056 7.592537367 7.741199337 7.352081047 7.814384669 7.386992155 7.426363208 7.943745699 255509879 glnA Stress Nitrogen limitation Clostridium carboxidivorans P7 8.757457037 8.987990413 9.149026335 8.279748072 8.143705065 8.361236601 8.134751911 7.908268331 8.339069733 8.042494148 7.872312719 8.483362778 254779158 katE Stress Oxygen stress Helicobacter pylori B38 8.350283963 7.768208163 8.238975807 7.16590229 7.238894322 7.296994827 6.865937186 7.662813242 7.176216637 7.214217759 7.324486617 82703357 dnaK Stress Heat shock Nitrosospira multiformis ATCC 25196 8.656159629 8.404002041 8.676772783 8.337673473 8.090542534 7.894910069 7.593393521 7.475780842 7.94026117 7.865663453 8.00226909 8.252823124 209965297 sigma_70 Stress Sigma factors Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 8.919617933 8.793233327 8.720616435 8.656282151 8.512753552 8.560679977 8.700948534 8.481670091 8.79545509 8.701104868 8.62261223 8.664079946 149354972 hmgB Organic Remediation Aromatics Aromatic carboxylic acid unidentified eubacterium SCB49 superkingdom:Bacteria;phylum:Bacteroidetes; 7.455511898 7.216163723 7.192183787 7.06897747 7.707794654 7.381561932 7.026713306 7.192315827 78222053 amyA Carbon cycling Carbon degradation Starch Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 8.546304719 8.383199029 8.60463757 8.401548609 8.261348421 8.047518925 8.278946916 8.086010457 8.242558691 8.181630195 8.059390496 8.228865852 46202992 chnB Organic Remediation Other Hydrocarbons Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 9.091084359 8.783084738 8.851654064 8.168271087 8.084626783 8.393848238 8.280195299 8.069375092 8.56306454 8.109452209 8.009575018 8.360671255 119511702 sigma_24 Stress Sigma factors Nodularia spumigena CCY9414 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nodularia;species:Nodularia spumigena; 8.506367594 8.573098012 7.89262461 7.930273633 8.275298542 8.726246813 8.045176645 8.484172664 8.136348016 8.284846546 7.989284729 38175312 endoglucanase Carbon cycling Carbon degradation Cellulose Trametes hirsuta superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 8.689732387 8.769574831 8.584743048 8.458440059 7.85866808 8.575892979 8.669802037 8.516918567 8.995726216 8.654313386 8.661348502 8.530415253 219677308 hly virulence hemolysin gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 9.691464942 9.566464732 9.927420506 9.617615287 9.586815511 9.347617316 9.267273416 9.406142034 9.210004722 9.313974224 9.429437037 9.261281776 56909297 cydB Stress Oxygen limitation Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 8.55360954 8.439223917 8.706066468 8.079207191 8.003741342 7.831599417 8.131386519 8.010921777 8.144187789 8.160715052 8.030298352 8.013513857 92114948 exaA Organic Remediation Chlorinated solvents Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 8.654674367 8.125867408 8.36128166 8.571671044 8.373608968 8.074827764 8.18503871 8.110211981 8.342273428 8.168885 8.501679561 110634738 catB Organic Remediation Aromatics BTEX and related aromatics Mesorhizobium sp. BNC1 9.423323756 9.655300377 9.666159015 9.380477401 9.165205059 8.85796576 9.516904748 9.959979994 9.146830369 33864500 ureC Nitrogen Ammonification Prochlorococcus marinus str. MIT 9313 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 9.378760516 8.062038526 8.253813936 8.94389278 8.766784815 8.61007308 9.181527954 9.101821998 8.831773477 8.862000851 218961059 CopA Metal Resistance Copper Candidatus Cloacamonas acidaminovorans superkingdom:Bacteria;genus:Candidatus Cloacamonas; 7.221919797 7.185664454 7.207935434 77953594 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 8.107661174 8.161151127 8.383076771 8.118477667 8.171531442 7.915417997 7.865158981 7.993827512 7.957697811 7.94282025 7.782159652 7.792661177 77543321 bphA Organic Remediation Aromatics Polycyclic aromatics Sphingomonas sp. TD4 8.564610721 8.515561658 8.634856991 8.36538232 8.085708796 8.088350158 8.111871469 7.85997835 8.592307242 8.397976759 8.069996169 8.37050093 19886686 glnA Stress Nitrogen limitation Methanopyrus kandleri AV19 10.21390748 10.02677133 10.36425773 9.64278704 9.64733012 9.628655334 9.704635428 9.542481535 9.285330153 9.74835512 9.654808758 9.877142397 163260956 MATE_antibiotic Antibiotic resistance transporter Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 8.049568729 8.186316917 8.190641186 8.052393026 7.930999532 8.0031505 7.988741101 8.175418008 8.158527669 8.17385831 7.760081968 163731857 pstB Stress Phosphate limitation Roseobacter litoralis Och 149 8.310553448 8.490320466 8.323971078 7.939830409 7.852416318 8.254940935 7.715237886 8.513595032 8.037093826 7.98643631 8.171158638 260621399 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Bacteroides finegoldii DSM 17565 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides finegoldii; 8.644597665 8.502331744 8.945176191 8.12152398 8.156057985 7.908422507 7.641436075 7.86968925 8.053352968 7.836148287 7.93539506 8.309454541 134294254 CopA Metal Resistance Copper Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 9.455236919 9.324727708 9.274672661 9.283672222 9.33575018 9.174599941 9.025428408 9.017000685 9.172474821 9.180934769 9.246489178 9.078957195 117998411 tftH Organic Remediation Aromatics Chlorinated aromatics Comamonas testosteroni KF-1 8.721970091 8.866805167 8.67865578 9.2341322 9.530199884 9.5642686 9.730987926 9.849743114 9.427285049 10.09407408 9.935170763 9.811190002 256533430 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 8.635267675 8.727438488 8.380054862 8.268042055 8.140753814 8.174473218 8.181200746 7.903472397 8.120083769 8.242163996 8.508557012 78494014 ureC Nitrogen Ammonification Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.206211365 9.633091747 9.231168089 8.602936885 9.198458982 9.54156776 9.740423783 9.312853915 9.225559965 8.959347965 9.584935167 9.254109988 108804392 proV Stress Osmotic stress Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 9.267180959 9.115797149 9.252585744 9.195050719 8.984401768 8.891025944 9.018670433 9.401433209 9.195401342 9.211486617 9.117487669 9.039027894 29652532 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 10.50928739 10.475772 10.53292582 10.09197848 10.26561153 10.21834786 10.21010053 10.26830701 10.31993574 10.4922414 10.64967055 10.38235514 91780333 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.189044569 8.27201258 8.33801303 7.697282235 7.6833426 7.546798633 7.36871307 7.153884312 7.473905152 7.184705197 7.638425273 89336704 ZntA Metal Resistance Zinc Desulfitobacterium hafniense Y51 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 8.885287435 8.774230832 9.07887948 8.691063533 8.724279725 8.657158325 8.586408456 9.070479519 8.548534822 8.817224931 8.689629354 8.873222575 15887672 pimF Organic Remediation Aromatics Aromatic carboxylic acid Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.316149624 7.307006115 7.284334549 7.350818167 7.872937136 261282667 glnR Stress Nitrogen limitation Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 9.079880144 8.837971663 9.019550974 8.000758135 8.074495227 8.040735461 7.669963676 7.324814565 7.958149853 8.089429511 7.846773042 8.267572187 157164265 CopA Metal Resistance Copper Campylobacter concisus 13826 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter concisus; 8.445013555 9.145507068 8.208139208 8.130208835 8.588613575 8.958404834 9.296178658 8.75788809 8.90270925 8.44419962 8.724164294 8.558552193 169629568 nmoA Organic Remediation Aromatics Nitoaromatics Mycobacterium abscessus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 10.05200722 10.08928525 9.951304002 9.688457342 9.636819641 9.272310238 9.429224087 9.826300826 9.743696735 9.62557308 9.528838574 9.407083849 156519338 BMO Organic Remediation Other Hydrocarbons Pseudomonas butanovora superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 7.670633429 7.567264279 7.756919385 7.292801849 7.669384545 7.97049011 7.777139409 7.613087978 7.536905534 33574007 Arylest Organic Remediation Aromatics Other aromatics Bordetella parapertussis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 7.424115049 7.461921643 7.161044457 7.141047893 8.140628538 7.463358988 7.480010971 7.411165972 119416759 phenol_oxidase Carbon cycling Carbon degradation Lignin Funalia trogii superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 8.429128625 8.517623646 7.794697029 7.683155987 8.365756661 8.347944422 8.044387312 8.82255109 7.990611754 7.657168133 8.06595753 156933328 MFS_antibiotic Antibiotic resistance transporter Enterobacter sakazakii ATCC BAA-894 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 9.260362383 9.264116579 8.707915564 8.877088014 8.895655651 9.037810508 8.943680141 8.938417661 8.901241183 9.001147157 9.282931791 8.957844661 30248519 glnA Stress Nitrogen limitation Nitrosomonas europaea ATCC 19718 8.49886889 8.111525535 8.574489585 8.122709043 8.006453173 7.637805085 8.035692588 7.848081354 8.146258482 7.797327364 7.973914321 7.74965417 119221379 gyrB other category gyrB uncultured bacterium superkingdom:Bacteria; 8.683754629 8.132292004 8.894482827 8.887951812 8.629992887 7.910146321 8.774194587 8.254336808 8.562388446 8.523486714 8.790040226 218722371 iro virulence Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 8.806504014 8.795709051 9.03283027 8.305335208 7.899194162 8.177797054 7.890891782 7.691442794 8.605754261 7.663002652 7.73766103 8.247726554 184196487 iro virulence Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.984611957 9.409752049 8.822278015 8.340142172 8.319791955 9.019418696 9.367421159 8.828977271 9.056646825 8.670940232 8.93361799 8.607793642 46392670 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 9.150703981 8.943437302 8.854425234 9.212846184 8.922333818 8.60970725 9.123047223 9.063435046 8.605191993 9.01561413 8.931914399 8.815042752 49611378 MATE_antibiotic Antibiotic resistance transporter Erwinia carotovora subsp. atroseptica SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 8.534951791 8.535070746 8.377950723 8.287089265 8.338930208 8.567522509 8.616831867 8.292739851 8.185777836 8.313845723 8.484940739 156857651 APS_AprA Sulphur adenylylsulfate reductase uncultured bacterium superkingdom:Bacteria; 9.726710281 9.785828322 9.79093118 9.769237915 9.679197332 9.627862344 9.603524537 9.764558388 10.02575931 9.962173871 10.00580688 9.983070383 18161006 narI Stress Oxygen limitation Pyrobaculum aerophilum str. IM2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum aerophilum; 8.087772248 7.840625859 8.030569073 7.803078283 7.816412825 7.60482893 6.889395315 7.546985825 7.492915919 7.507721295 7.344492706 7.248119644 169117860 mer Metal Resistance Mercury uncultured organism 9.547863883 9.607376006 9.156436636 9.005071549 9.639466708 9.602541561 9.81697768 9.480130487 9.72770541 9.851826009 9.637291783 253701115 pstB Stress Phosphate limitation Geobacter sp. M21 8.867992343 8.942483898 8.892532675 8.525371506 8.435376374 8.284360917 8.144806882 8.488026727 8.588970485 8.439562087 8.131412827 8.570653625 113526641 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.558386776 8.561252708 8.590930863 8.74074041 7.984241459 8.155803577 8.729103215 8.576954753 8.997922052 8.402874853 8.306886549 8.421737867 225378509 ABC_antibiotic_transporter Antibiotic resistance transporter Roseburia inulinivorans DSM 16841 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia inulinivorans; 8.41242635 8.281995244 8.241630822 7.527402689 7.504917461 7.691817719 7.482093497 7.493523097 7.97157485 7.523225375 7.449684349 7.34446535 262040727 iro virulence Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 8.334106695 8.59621141 8.808071253 8.491860889 8.481802302 8.513090771 8.595282824 9.164921471 8.650706342 9.012916568 8.93636259 9.029567575 124493778 cadBD Metal Resistance Cadmium Lactococcus lactis subsp. cremoris MG1363 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Lactococcus;species:Lactococcus lactis; 8.400386377 8.242087123 7.326720335 7.104934499 112774548 xylF Organic Remediation Aromatics BTEX and related aromatics Delftia sp. AN3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia; 7.819649725 7.738346291 7.714067194 7.65862378 7.709694439 85825378 ureC Nitrogen Ammonification Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 9.072299535 8.998742863 8.677236845 8.701976802 8.610364948 8.460994629 8.692828205 8.574446635 8.692023472 8.544971284 8.7266327 8.609808399 194538346 alkK Organic Remediation Others Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.600922612 8.327603844 8.506744993 8.159095408 8.053093417 8.285200615 8.125619288 8.282092968 8.17797724 8.078323152 7.798086117 169117870 mer Metal Resistance Mercury uncultured organism 9.468193472 9.552091856 9.852202624 8.76854938 8.761067715 9.070128811 9.028090041 8.953751317 8.887215183 9.141157675 9.025459871 9.329351915 105893048 Catechol Organic Remediation Aromatics Other aromatics Burkholderia cenocepacia AU 1054 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 8.803792641 8.788878874 8.942931413 8.818164684 8.808747149 8.557367811 8.956123876 9.214255179 9.030332608 8.921137983 8.684924973 8.9323341 73540712 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.320214514 8.138014324 7.458203441 8.367589884 8.224184865 8.114041602 7.898514325 8.324916742 7.928416968 7.949230604 56798485 catechol_B Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 8.377035112 8.718986561 8.48573827 8.728309834 8.781852557 8.692790142 8.411963404 8.941450055 8.815478934 8.741024186 8.849026016 8.493898383 76577568 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.025737819 9.275484824 115524425 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.789228563 9.11203966 8.911436357 8.839853766 9.041438903 9.061745214 8.960622555 9.426457927 8.904699128 9.270423349 9.284633529 9.145215545 34103940 inv virulence invasion Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 9.168043323 9.182017395 9.496779727 8.881402294 8.751796357 8.681348752 8.790518344 8.935808253 8.73337098 8.955962521 8.948520448 9.164684977 169859856 ureC Nitrogen Ammonification Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 9.417875579 9.741284188 9.455984089 9.649136572 9.402569361 8.904546861 9.398556511 9.09776733 9.797463827 9.668354419 119949956 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 8.562982951 8.436319786 8.72214992 8.99027841 8.287827702 8.053771307 8.336929023 8.345061838 8.192807091 8.498698328 8.338971261 7.969442978 4204381 xylG Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas sp. A8AN3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.082225442 8.244536495 8.278728505 7.501991981 7.604198469 7.597416187 7.893773009 8.071826905 7.976412951 7.811619684 217330167 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.141979063 8.103035365 7.967591644 7.565719243 7.572277782 8.099897493 7.335160373 7.461210291 7.463770095 7.695272613 50727106 endochitinase Carbon cycling Carbon degradation Chitin Microbulbifer hydrolyticus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Microbulbifer; 8.819706647 8.401721961 8.674329494 8.24889377 8.240167991 8.12354637 8.020820164 7.875085761 8.182591772 8.07491704 7.923861732 8.265416147 93456637 sigma_70 Stress Sigma factors delta proteobacterium MLMS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 9.174815579 8.838652889 8.906734064 8.493817626 8.504723426 8.539767507 8.593138984 8.832127798 8.701808779 8.959499555 8.695294532 8.685097272 116270697 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 9.61534006 9.527768266 9.699464636 8.54575604 8.564017593 8.706836314 8.365239347 8.463633406 8.610440613 8.499577209 8.893877453 56798785 catechol_B Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 8.936439359 9.046639175 9.050078875 8.387963081 8.254043166 8.32272127 8.038115952 8.519161208 8.232810693 8.412045686 8.565150531 7.875772031 148262604 cytochrome Energy process Energy process Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 8.275693853 8.694689885 9.08853384 8.743297762 9.084848601 8.356558229 8.992345269 8.433678553 8.817382021 9.106116408 8.57429228 149200792 phn Organic Remediation Herbicides related compound Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.411715932 8.544319526 8.530105174 8.497526 8.381339741 8.130379292 8.202023146 8.263851322 8.537258542 8.392396072 8.30492938 8.052777361 226228225 sigma_24 Stress Sigma factors Gemmatimonas aurantiaca T-27 superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 7.369440114 8.15716907 7.818379653 7.73943578 7.548219727 8.14367191 7.792636913 7.951909096 7.940351063 83017113 bphA Organic Remediation Aromatics Polycyclic aromatics Paenibacillus sp. YK5 8.334940766 8.184716692 7.749593128 7.521479817 7.690021437 7.431262359 7.130113773 7.933500494 7.160646784 7.451074743 7.592346925 66044064 TerD Metal Resistance Tellurium Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 8.808748051 9.01641881 8.770877597 8.409957803 8.501637788 8.430751494 8.420900709 8.724894328 8.443005314 8.642356514 8.531275593 8.774327954 251733353 sigma_70 Stress Sigma factors Bradyrhizobium japonicum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 9.228450531 9.324230424 9.274475397 8.903606404 9.293200313 9.539073704 9.42559197 9.485920598 9.475124717 9.080470077 9.525349855 9.278766926 256998553 nplT Carbon cycling Carbon degradation Starch Enterococcus faecalis CH188 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus faecalis; 8.167145395 8.365152794 7.780909893 8.087219191 8.109099223 7.830633293 8.493756575 7.974317358 8.247852032 7.759755405 113946760 amyA Carbon cycling Carbon degradation Starch Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 9.315000344 9.474273342 9.122423893 9.136581175 9.563811317 9.834568818 10.19064445 9.786575183 9.688237188 9.471228479 9.725275178 9.681461581 197748209 MATE_antibiotic Antibiotic resistance transporter Mannheimia haemolytica PHL213 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Mannheimia;species:Mannheimia haemolytica; 9.163598035 8.883357553 9.180130792 8.414595594 8.299634171 7.913826768 8.213514067 8.045502552 8.102515852 8.061495143 8.231359242 152030504 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Anaeromyxobacter sp. Fw109-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 8.990157493 9.273056537 9.209777033 8.995477571 9.069122445 9.22299016 9.517885932 9.152247109 9.493335466 8.89042617 8.640589685 8.835949457 83316600 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.084117163 8.847374451 8.9919486 8.259972382 8.383865753 8.360649553 8.358526575 8.104572463 8.187413249 8.199402869 8.328115245 8.658028973 227841796 obgE Stress Radiation stress Oribacterium sinus F0268 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Oribacterium;species:Oribacterium sinus; 7.093428692 7.226268415 134094341 pstB Stress Phosphate limitation Herminiimonas arsenicoxydans 7.914399013 7.859172429 7.47315588 7.587397696 7.44787326 7.879835327 7.265747332 7.270248612 7.290652728 239837972 AceA Carbon cycling Carbon degradation others Micrococcus luteus NCTC 2665 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus;species:Micrococcus luteus; 9.613806443 9.695185305 9.491680858 8.97806352 9.151478329 9.326977751 9.923392264 9.457664948 10.01816484 9.104845677 9.173387218 9.114403455 121595485 pilin virulence pilin Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 8.902696668 8.852475435 8.982705341 8.513500816 8.450441189 8.51852706 8.673805183 8.694993969 8.761836305 9.107384538 9.194480509 9.074585873 116622344 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 8.998960104 9.071981103 9.231789997 8.55713024 8.706144479 8.883677329 9.544551966 8.882396819 9.439893223 8.693758935 8.968464034 9.053436457 52080473 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 8.10717347 8.127524811 7.900490257 7.903338788 7.673346496 7.477187184 7.879855258 7.868321136 7.953964346 7.854491578 7.935679406 6457937 amyA Carbon cycling Carbon degradation Starch Deinococcus radiodurans R1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 8.897047793 8.841988547 8.99589713 8.219199344 8.229145052 8.334200629 8.136254587 8.019101694 8.024591735 7.975893077 8.149320632 160882659 catB Organic Remediation Aromatics BTEX and related aromatics Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 9.87324126 9.955393004 9.87657309 9.14085296 9.098152401 9.040090575 8.843747191 8.535818628 8.833120349 8.772391872 9.045909308 9.267643271 262375130 phoB Stress Phosphate limitation Acinetobacter lwoffii SH145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter lwoffii; 8.504474188 8.740401633 8.711494899 7.638840686 8.380728701 8.77021323 8.306629109 8.197157467 8.032074749 8.524183323 256672287 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.659596155 8.407363407 8.257050691 8.065656842 7.881548597 8.109230709 7.65646815 7.850020244 7.745071675 7.946845256 7.983105076 7.97451088 219563144 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 8.546373752 8.394369184 8.479975429 7.698909248 7.657176275 7.809531035 7.795546041 7.522211415 8.274934698 7.603032102 7.636257361 7.495363284 36785551 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 7.705157987 7.919385024 7.526527843 7.345102129 7.510395339 7.618902218 7.778286226 7.456194385 260217195 SMR_antibiotics Antibiotic resistance transporter Cronobacter turicensis z3032 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter turicensis; 8.367419611 8.586653442 8.057885295 7.892828917 8.118911453 7.919966223 7.791376131 8.076401377 7.966451909 8.387079887 8.292352685 157322510 PobA Organic Remediation Aromatics Aromatic carboxylic acid Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 7.474615876 7.444485994 7.197666121 7.453159733 7.085167986 7.566014408 7.284777509 7.128738195 40787196 bphF1 Organic Remediation Aromatics Polycyclic aromatics Rhodococcus sp. DK17 8.503946287 8.29654901 8.219446684 8.325746732 8.270396911 8.441745777 7.74003314 8.420550136 8.191768264 8.169420497 8.124802712 7.953754697 156936409 amyA Carbon cycling Carbon degradation Starch Enterobacter sakazakii ATCC BAA-894 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 8.895134298 9.053456112 8.894723717 8.381115431 8.771755877 8.734900662 9.085064361 8.864180735 8.491128174 8.981064005 9.128310861 8.695041343 166363013 nirA Nitrogen Assimilatory N reduction Microcystis aeruginosa NIES-843 8.836094849 8.784239028 8.838824747 8.210317502 8.263400169 8.171627013 8.216738929 8.020478862 8.403783356 7.962698121 8.120828137 8.294374105 37651314 nahF Organic Remediation Aromatics Polycyclic aromatics Xanthobacter polyaromaticivorans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter; 8.842474124 8.72711488 8.772470185 8.112968604 8.168208611 8.006063776 7.878120122 7.614085146 8.205897714 7.932153857 7.691547098 8.116571106 77459186 Catechol Organic Remediation Aromatics Other aromatics Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 9.311752495 9.615929286 9.836367265 9.157635254 9.098063248 8.999505971 9.123313255 8.883294608 8.758848273 9.027357119 8.963460471 9.313926961 206685101 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.763492733 8.464354407 8.568191026 8.298913236 7.898873963 8.01045498 8.160186347 8.047241528 8.200731344 8.031677052 8.115966226 iegcoxL10 CODH Carbon cycling Carbon fixation 8.706017083 8.968411185 9.013296776 8.867576715 8.942113464 8.82750036 8.769459867 9.111334257 8.631644148 9.005426497 8.904794002 8.635290917 117618201 arsB Metal Resistance Arsenic Aeromonas hydrophila subsp. hydrophila ATCC 7966 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas hydrophila; 8.71685528 8.871201431 8.948772411 8.415018642 8.363032028 8.337715842 8.228035221 8.110270619 8.289215167 162147982 MATE_antibiotic Antibiotic resistance transporter Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 8.717702004 8.547438155 8.56059907 8.244558622 8.158642089 8.507480663 8.368693254 8.440525868 8.2971064 8.213445261 8.077334829 239908579 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio magneticus; 9.888346663 9.770958604 9.576240371 9.901668341 9.616630745 9.362664292 9.832550495 9.723507791 9.745141671 9.63570144 9.539283543 9.370063638 113528997 xylG Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.926437133 9.10367807 9.136861767 8.807080224 8.707329948 8.29286633 8.720132022 9.172766221 8.684068595 8.787995157 8.661194365 8.801826093 167565832 iro virulence Burkholderia oklahomensis EO147 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia oklahomensis; 9.393913329 9.41580021 9.524491543 9.07891365 9.114058982 9.033981588 9.021884142 8.904470282 8.959773655 8.978780742 9.124318477 9.144847132 139003172 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.261377981 8.327636505 8.188336212 7.931163102 8.013852867 8.36413184 8.742161418 8.247623757 8.721727969 8.046676003 7.996255301 8.398174896 222085432 MFS_antibiotic Antibiotic resistance transporter Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 9.268209792 9.215327304 9.16120934 8.835365016 9.067702528 9.023516426 8.352375616 8.931422359 8.831110574 9.064695776 9.283859525 8.575365926 151577898 tfdA Organic Remediation Aromatics Chlorinated aromatics Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.161944057 8.111323583 7.956114304 8.04347761 7.835481619 7.638244035 8.37037098 7.945296636 7.644428897 7.821590637 7.971683946 224946268 sigma_24 Stress Sigma factors Corynebacterium matruchotii ATCC 33806 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium matruchotii; 8.342002268 8.595976202 8.385319389 8.888155623 9.044152427 8.618188111 8.922387858 8.780351541 8.604707231 8.445887407 8.635887421 8.228149545 172041228 pimF Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium urealyticum DSM 7109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium urealyticum; 8.62463088 8.524622984 8.239433321 8.285972151 8.46142687 8.245968846 8.784935922 8.656796455 8.455896689 8.652724879 8.957241546 8.568683605 198253761 CopA Metal Resistance Copper Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 9.888811483 9.841521909 9.977681582 8.988873802 9.67019368 9.725436827 10.09407046 9.082570254 10.16618353 9.171861816 9.393203442 9.494038592 251755155 type_III_secretion virulence secretion Pectobacterium carotovorum subsp. carotovorum PC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 8.758319738 8.945777201 8.757532451 8.620750345 8.178333388 8.774395466 9.204441597 8.765639815 9.00109765 8.543468347 8.746579458 8.515407717 160942023 atzA Organic Remediation Herbicides related compound Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 8.220732888 8.262347791 8.051738236 7.797972039 7.572350846 7.493954792 8.122120937 8.021550956 8.062791673 7.371085013 8.014667133 86748076 rubisco Carbon cycling Carbon fixation Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.686318067 8.741627803 8.997163909 8.877561078 9.004798114 8.825346113 9.148224059 9.611547567 9.156554758 9.373913272 9.051514679 9.319299474 219563174 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 8.346292234 8.600058152 8.646848697 7.853328838 7.885831269 8.074077155 256828735 fnr Stress Oxygen stress Desulfomicrobium baculatum DSM 4028 9.132623573 8.976058368 9.005890571 8.614902301 8.488925552 8.429490588 8.303495642 8.230344168 8.589637854 8.35507169 8.61764938 8.500898906 61611849 nagG Organic Remediation Aromatics Aromatic carboxylic acid Delftia tsuruhatensis 9.625197792 9.710705624 9.67310234 9.517889636 9.500295301 9.32580272 9.238312325 9.572628615 9.866158846 9.397145339 9.25615026 9.389975315 35214621 ZntA Metal Resistance Zinc Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 10.64159234 10.526419 10.47471796 9.806395671 9.759795127 9.774790922 10.1248225 9.571351159 10.1944826 9.932905275 10.19574188 10.22043094 163761438 sox Sulphur Sulphur oxidation Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 8.402867964 8.742140511 8.475865694 8.024374711 8.02761281 8.455313849 8.451912031 8.256787412 8.491715786 8.371029667 8.527408561 8.590791343 76056989 narG Nitrogen Denitrification uncultured bacterium 7.849510675 8.208723375 7.004550071 7.070223403 6.888146515 223510876 mer Metal Resistance Mercury Ricinus communis superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Streptophyta;order:Malpighiales;family:Euphorbiaceae;genus:Ricinus; 9.723537021 9.277889922 9.894693656 9.850816025 10.12276981 10.13267949 9.594104575 10.15481017 9.561477504 9.887098155 10.01328449 10.50209024 110284822 fnr Stress Oxygen stress Mesorhizobium sp. BNC1 8.411443886 8.418305622 8.134483613 7.733033251 7.406688893 7.686799529 7.833917285 7.759882338 7.887248539 7.746544572 7.622766467 161162033 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 7.479364438 8.464654766 8.6337857 7.868792478 8.330516094 7.998132034 8.327499398 7.895640082 184195100 sigma_70 Stress Sigma factors Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 9.135405912 8.678870801 8.902812057 8.480215351 8.602585527 8.882166136 9.213279452 8.226078685 9.239989561 8.719110794 8.903557835 8.806157844 118469342 cydB Stress Oxygen limitation Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 9.925151704 9.85498843 9.731672169 9.02669315 9.693404292 9.666004395 10.07353889 9.008368833 10.15921816 9.241972227 9.267217463 9.428648631 242219269 katE Stress Oxygen stress Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 8.500026197 8.393344955 8.380800732 8.226993403 8.159545998 8.163605355 8.135537924 8.38127375 8.359537675 8.339818068 8.300273987 8.43122459 78036081 nasA Nitrogen Assimilatory N reduction Xanthomonas campestris pv. vesicatoria str. 85-10 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas euvesicatoria; 9.225087484 9.177133029 9.217337978 8.942497293 8.918790915 8.770101183 8.747246924 8.965768127 8.685800116 8.932743563 9.150925905 9.020070373 212539257 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 8.128653753 8.167094761 8.551256775 7.608433497 7.583172146 7.375631322 6.876117584 7.250848084 7.749493307 7.36998952 7.134062012 7.648368566 219667560 fnr Stress Oxygen stress Desulfitobacterium hafniense DCB-2 9.666091147 9.612570527 9.499807457 8.982962208 9.09434682 9.421958837 9.418039225 9.008324392 9.543258456 9.181191174 9.502952196 9.242598586 2645419 xylanase Carbon cycling Carbon degradation Hemicellulose Caldicellulosiruptor saccharolyticus superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Caldicellulosiruptor; 7.563550502 7.508527301 6.814699013 7.228396834 7.845578759 7.52809702 7.237897968 7.490356495 261341050 ABC_antibiotic_transporter Antibiotic resistance transporter Enterobacter cancerogenus ATCC 35316 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 8.783437395 8.524394935 8.840617288 8.360449399 8.19955995 7.973708404 7.782681864 7.801879178 8.039412293 7.876023482 8.021985997 8.231646204 72120380 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.679783067 8.422310495 8.376071554 7.984424369 7.643177244 8.001860303 8.396082444 7.786852792 8.055861163 8.022448463 7.696306951 7.697974586 114328667 nagK Organic Remediation Aromatics Aromatic carboxylic acid Granulibacter bethesdensis CGDNIH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 9.042201977 9.17694791 9.24818705 8.714036944 8.62005733 8.725860106 8.473675612 8.63139846 8.531971379 8.597781463 8.964218881 189193473 exoglucanase Carbon cycling Carbon degradation Cellulose Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7.910838445 7.423695107 7.354337658 7.1220131 7.893529882 7.329097756 7.350406347 153887146 ophC Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.605067532 8.576300279 8.743809512 8.083791337 7.995686922 8.174982088 7.557706663 7.859786328 8.143042392 8.179430237 8.271012161 8.245236077 157804842 APS_AprB Sulphur adenylylsulfate reductase Thiorhodovibrio winogradskyi superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodovibrio; 9.360409418 9.497618478 9.392755092 9.636879539 9.626009177 9.127932576 9.583325249 9.984367052 9.391948488 9.578340097 9.411567899 9.588308619 218662864 pulA Carbon cycling Carbon degradation Starch Rhizobium etli IE4771 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.265611053 8.647470367 8.88249581 7.992488031 8.064784157 8.102073307 8.478585365 7.604150624 8.109342925 7.584302455 8.167474449 134099497 cydA Stress Oxygen limitation Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 8.788109122 9.110349775 9.048523504 9.128223833 9.206746607 9.041204288 9.243770801 9.298954784 9.293472223 9.364467466 9.30329477 8.759169822 71365127 merB Metal Resistance Mercury Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.454212899 8.58498144 8.255090611 8.744556436 8.559742157 8.236193897 8.384659953 8.381362469 8.707462431 8.454377854 8.108125575 7.981620778 145620105 tutFDG Organic Remediation Aromatics BTEX and related aromatics Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 8.644764475 8.524911303 8.623958655 8.085961182 8.025124783 8.060983167 8.086359417 8.46435326 8.207294524 8.21161316 8.14726152 8.328506204 154174449 napA Nitrogen Dissimilatory N reduction Campylobacter curvus 525.92 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter curvus; 8.252456573 8.211406598 8.223449558 8.737764095 8.53561303 8.592547581 8.65418176 8.991410733 8.340434526 8.896169884 8.862793418 8.147192381 149783191 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.749978098 8.395697599 8.726916925 8.234115908 8.16157898 7.933845127 7.948633843 8.088034924 8.117325539 8.097572339 7.750873129 8.288688909 78221553 narI Stress Oxygen limitation Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 8.322586499 8.081917259 8.037656628 8.012824401 7.787104215 7.960908484 7.836886635 7.722647816 8.544803607 7.51592665 7.57041626 7.581126654 37548718 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 9.819827951 9.657272908 9.76557231 9.293689574 9.569163586 9.300910839 9.192231859 9.313188825 9.347301397 9.531808881 9.65799468 9.497810107 78189387 hrcA Stress Heat shock Chlorobium chlorochromatii CaD3 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium chlorochromatii; 9.077926149 9.298404829 9.145577764 9.375265596 9.331223928 9.222300614 9.265405388 9.743926731 8.578321119 9.27015516 9.507409709 9.230866773 238720127 iuc virulence aerobactin Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 8.81725316 8.634149268 8.662942866 8.954591147 8.968843815 8.548205501 8.533395124 9.051798732 8.642474785 8.876374401 8.724730434 8.783706986 124514715 glycosyl_transferase_EPS Bioleaching EPS Leptospirillum sp. Group II UBA 8.491507972 8.080464823 8.618747867 8.185049009 8.30659506 8.200275993 8.130490883 8.326818039 8.346176977 8.409034963 8.540118425 8.264826425 77962879 MFS_antibiotic Antibiotic resistance transporter Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 8.879522595 9.136611123 8.918922083 8.446306436 8.608829611 8.486776546 8.481314892 8.768121285 8.497641488 9.157324445 8.963772327 8.748338977 171697592 NiR Nitrogen Assimilatory N reduction Cyanothece sp. ATCC 51142 9.024177017 9.015384743 8.997053297 8.650494514 8.716999497 8.689541079 8.495555327 8.740527741 8.670417744 8.729997192 8.850688593 8.795669807 187478034 nagG Organic Remediation Aromatics Aromatic carboxylic acid Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 8.418780159 8.514302062 8.685511224 7.905808027 7.724980449 7.981667725 7.526970907 7.479454314 7.597595925 7.706870702 7.806003715 74038370 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 11.05803891 10.83524614 10.82954011 10.22134883 10.22857741 10.68529557 10.14180772 10.67559645 10.62571779 10.88552687 10.61809665 169004151 ara Carbon cycling Carbon degradation Hemicellulose Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 9.493444076 9.484413464 9.580248857 9.084714592 8.875129849 8.7784497 8.727431633 8.69040976 8.867396065 8.805930319 9.046989544 119509387 pstB Stress Phosphate limitation Nodularia spumigena CCY9414 8.733935313 8.554245591 8.447163416 7.596402753 8.467601711 8.644976879 8.523201353 8.445645077 8.671821424 8.698833896 8.569343623 8.59752276 116224961 xylanase Carbon cycling Carbon degradation Hemicellulose Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 8.024394431 7.787211425 7.684289945 7.280877972 7.699505804 7.950882384 7.417645549 7.655810423 7.745271403 2437819 exoglucanase Carbon cycling Carbon degradation Cellulose Anaerocellum thermophilum 8.580914801 8.8560928 8.730215681 8.403258513 8.014000226 8.311501347 8.456060139 8.849065733 8.437293298 8.832545618 8.457348688 8.449422263 18034319 dsrA Sulphur sulfite reductase Syntrophobacter fumaroxidans superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 9.352591565 8.959401183 9.110264452 8.670571091 8.624940813 8.522156188 8.552406115 8.71520328 8.678954341 8.671917479 8.686544719 8.812119894 149375423 ureC Nitrogen Ammonification Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 8.508997991 8.456617197 8.553860611 8.698687932 8.773609516 8.616880906 9.14283312 8.787716308 8.752102996 8.791809819 8.968464991 78093574 narG Nitrogen Denitrification uncultured bacterium 9.284869848 9.267459689 9.479732882 9.445676218 9.454946591 9.030171263 8.970750375 9.580352667 8.942020678 9.519846118 9.08748881 9.405417737 212725343 pheA Organic Remediation Aromatics Other aromatics Acinetobacter sp. E-9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 6.866054299 7.296206758 7.291405803 214029638 oxyR Stress Oxygen stress Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8.933585094 8.96696865 9.141679981 8.794769354 8.597184228 8.480601274 8.636063737 8.772920901 8.607655177 8.700287387 8.595561289 8.692895026 124266788 exaA Organic Remediation Chlorinated solvents Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 8.699419193 8.593725574 8.089282292 8.556517249 8.413667391 8.654706079 8.327809159 8.206014678 8.439889212 8.426613923 91778883 katE Stress Oxygen stress Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 9.287102528 9.2934771 9.118782743 8.609499795 8.679815295 8.602622434 8.986686236 8.516030438 9.048355903 9.141642728 9.210303987 9.083733688 139004179 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.061607244 8.127125678 8.069975953 8.246512514 8.287458174 8.059160566 8.562478789 8.143985742 8.295168394 8.126169033 8.335519599 153999570 dsrB Sulphur sulfite reductase Candidatus Methanoregula boonei 6A8 8.698721445 8.627636665 8.034158241 7.825019258 7.720959156 7.692887622 8.294576968 83364899 pcc Carbon cycling Carbon fixation Rhodobacter sphaeroides ATCC 17029 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 9.4001106 9.34124331 9.611900206 9.045969705 9.033506485 8.912809132 9.186210168 8.598458536 9.072426685 9.221293505 9.29635916 221721859 phn Organic Remediation Herbicides related compound Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 9.65535187 9.775906524 9.778807657 9.437107579 9.585072735 9.420957295 9.6877773 9.841224447 9.768009499 9.956487266 9.691726712 9.849516128 170700678 linB Organic Remediation Pesticides related compound Burkholderia ambifaria IOP40-10 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 7.927528392 8.103319463 7.832089009 7.638795629 7.489588757 7.591635929 7.717326236 8.080572404 7.61471005 7.664790665 7.622703305 206687799 ChrA Metal Resistance Chromium Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 9.573583481 9.510713525 8.843663483 8.870071938 8.602039566 8.955247814 9.256808565 30249838 katE Stress Oxygen stress Nitrosomonas europaea ATCC 19718 7.580470413 7.421175544 7.282554667 7.353059597 7.140041059 7.628775007 7.257143976 7.154329868 7.26285768 70930946 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.952932221 8.1682734 8.135329231 8.186770164 8.50586557 8.530405104 8.322130091 8.031862511 7.822151537 8.306526739 8.048393292 62391902 Catechol Organic Remediation Aromatics Other aromatics Corynebacterium glutamicum ATCC 13032 8.604003943 8.66724432 8.190926642 8.168945885 8.348963731 8.47095918 8.326503719 8.409059599 8.246378067 8.33830352 8.334185619 182677557 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 8.769737628 8.67674755 9.177453211 8.300476936 8.241375055 8.326195114 8.602617614 8.160936925 8.394488688 8.238455473 8.231113635 8.213936885 12644702 atzC Organic Remediation Herbicides related compound Acidovorax avenae subsp. citrulli superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 8.365294241 8.094750812 8.601753548 7.407476677 7.32312712 7.396335976 7.482385835 6.769064335 8.132833326 7.544731681 7.292319614 7.73974709 78218626 AceB Carbon cycling Carbon degradation others Desulfovibrio desulfuricans G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 8.788921731 8.756034227 8.779843518 8.476955748 8.533282536 8.109194167 8.162426782 8.172895375 8.213471298 8.151187161 8.297935907 56459484 pilin virulence pilin Idiomarina loihiensis L2TR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina loihiensis; 9.75575022 9.636278689 9.881684926 9.044153365 9.08514342 9.112943954 8.749560275 8.811547204 8.826366129 8.98594753 9.036079955 9.180131926 1177849 amyA Carbon cycling Carbon degradation Starch Pseudomonas sp. KFCC10818 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 9.835354149 9.710245333 9.854704689 9.092344182 9.059195185 9.014555707 9.072264605 9.195716028 8.924210058 9.206650374 9.239783184 9.534662645 146273779 Al Metal Resistance Aluminum Pelotomaculum thermopropionicum SI superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Pelotomaculum;species:Pelotomaculum thermopropionicum; 9.250778535 9.068650719 9.183191237 8.700152814 8.390021644 8.751873237 8.135926732 8.03343813 8.307203991 8.359743367 8.405241091 8.758803708 146188529 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9.030031378 9.195915662 9.325253029 8.636385046 8.724782494 8.692866767 8.657358052 8.87870991 8.536749916 8.709814628 8.75484785 8.93544858 239905290 nrfA Nitrogen Dissimilatory N reduction Desulfovibrio magneticus RS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio magneticus; 8.009873646 7.88901183 7.844002329 7.909647333 7.832830866 8.003932371 8.021083267 8.267475564 8.108751583 7.829044787 7.965539088 124488145 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 8.849917448 8.772860886 9.195926174 8.177984465 8.734839814 8.833060731 8.468715745 9.123919008 8.573831356 8.838519363 8.783292371 15141332 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 8.605906016 8.773677308 8.28683639 8.217230505 8.210180314 7.776336848 8.001937209 8.091517945 8.19532401 8.29058011 261857091 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.208729357 9.297792131 9.222477435 8.617482261 8.814884871 8.714095891 9.000923459 8.819925945 8.860921675 8.875069087 9.054542295 8.999737758 91183065 pimF Organic Remediation Aromatics Aromatic carboxylic acid Psychroflexus torquis ATCC 700755 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Psychroflexus;species:Psychroflexus torquis; 8.525075639 8.193421886 8.358485859 7.781267092 7.976659108 7.902547603 7.644384529 7.781869718 8.033428393 7.987018799 8.101531267 77969455 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 9.475796773 9.143852993 9.259218416 8.825941826 8.821998176 8.667595732 8.775178638 8.811352433 8.856088418 8.902551227 8.923388218 8.868778541 227348643 SMR_antibiotics Antibiotic resistance transporter Corynebacterium pseudogenitalium ATCC 33035 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium pseudogenitalium; 9.125042656 9.120993369 9.38935707 8.817072109 8.775581329 8.549159958 8.587077324 8.947315279 8.883724786 9.051973975 9.079928107 9.123239454 196197866 TehB Metal Resistance Tellurium Clostridium thermocellum DSM 4150 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 8.230803034 8.210006697 8.292424546 8.433813476 7.771556237 7.617650466 7.320594539 7.803168495 8.117119676 7.389951564 145298208 B_lactamase_C Antibiotic resistance Beta-lactamases Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 8.71563884 8.610384702 8.597819108 8.20432484 8.587180249 8.775412344 8.542505364 8.797837133 8.282466985 8.252075895 8.264646706 217970048 obgE Stress Radiation stress Thauera sp. MZ1T superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 8.383247042 8.286906921 8.282449223 8.771444245 8.78488693 8.435055079 8.349737616 8.897643316 8.401886856 8.806578861 8.512149285 8.710044253 241666779 sigma_24 Stress Sigma factors Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.575209157 8.666732453 8.550467143 8.105366256 8.177383657 8.086047202 7.821194135 8.236449984 8.117953972 8.267044083 7.927881452 8.377573889 76058107 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.843522955 8.925277719 8.791943909 8.490776714 9.018000311 8.937691085 9.344717682 9.060074616 8.701510508 8.620823386 8.887837173 8.746238743 56685075 pstB Stress Phosphate limitation Synechococcus elongatus PCC 6301 9.385728135 9.692135046 9.278297862 9.731298686 10.09882466 9.959462107 10.42240681 10.26511588 10.06078791 10.1840936 10.39365225 10.27814609 68198514 pcc Carbon cycling Carbon fixation Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.456572993 8.740093499 8.24345478 8.98998641 9.251681471 8.774096723 8.824192632 9.32219299 8.566069916 9.099560894 9.045333392 8.826639236 150419220 endochitinase Carbon cycling Carbon degradation Chitin Vibrio cholerae RC385 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 7.922174602 8.197922924 8.128354165 8.112473996 8.270570204 8.395815336 8.159458856 8.33482142 8.241985433 8.214590351 7.895986798 259165351 cda Carbon cycling Carbon degradation Starch Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 9.067902795 9.006303292 9.278340246 8.53290325 8.356270207 8.300002737 8.167205369 7.988757529 8.175804003 8.380222615 8.313398379 8.631005524 219808356 AprA Sulphur adenylylsulfate reductase uncultured bacterium superkingdom:Bacteria; 10.67734496 10.51384639 10.60599113 9.733012045 9.85664822 9.877568458 9.912427124 9.73250804 10.15053359 10.00277244 10.24523897 10.01235676 145589481 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Polynucleobacter sp. QLW-P1DMWA-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 8.954717205 8.92472498 9.086765452 8.266527343 8.313613115 8.511397564 8.298803756 7.952764605 8.386012752 8.324665382 8.508372769 269792113 arsM Metal Resistance Arsenic Thermanaerovibrio acidaminovorans DSM 6589 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Thermanaerovibrio;species:Thermanaerovibrio acidaminovorans; 8.535657383 8.438602845 8.531976456 8.441722774 8.298078506 8.277314148 8.224885335 8.297160197 7.785482693 8.313262926 8.146351053 8.211300158 167665923 sigma_70 Stress Sigma factors Anaerotruncus colihominis DSM 17241 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Anaerotruncus;species:Anaerotruncus colihominis; 9.086925956 9.310198683 9.04972538 8.900353037 8.664825359 8.543120622 9.127492528 9.276934857 226229018 hly virulence hemolysin Gemmatimonas aurantiaca T-27 superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 8.87290037 8.863541848 8.834431371 8.565291609 8.521604396 8.311954863 8.317559737 8.702480228 8.731276057 8.561189703 8.445857692 8.583696343 158107730 tfdA Organic Remediation Aromatics Chlorinated aromatics Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.760575377 8.516292285 8.783952224 8.451136945 8.478714865 8.109362619 8.497087885 8.520694786 8.655952015 8.660297487 8.549655255 8.577313004 83654758 silC Metal Resistance Silver Burkholderia thailandensis E264 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 8.224189068 8.332492121 8.394333239 8.278763404 7.91428185 7.901946833 7.881891057 8.057042326 8.122772673 8.011492868 8.01231809 7.757865154 170740755 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 9.029000182 9.165452903 8.777976658 9.176096651 8.987544436 8.709589697 9.241402011 9.085622099 9.172737194 9.012865763 8.971141621 8.75938866 167589245 nagG Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia ubonensis Bu 8.670465588 8.56076769 8.413100811 8.103047819 8.260142906 8.476639049 8.350702351 8.291115733 8.355571244 8.532265782 8.773679549 8.749052489 55740951 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.529941456 8.382853046 8.45933192 8.289817312 8.275825229 8.256165334 8.462222653 8.638767357 8.579038247 8.35861082 8.249071312 8.278509819 182413504 hly virulence hemolysin Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 8.355281536 8.713016102 7.913379709 8.151489666 8.589639483 8.86782173 8.656128224 8.512308268 8.830248306 8.654503177 8.937197208 209546599 nmoA Organic Remediation Aromatics Nitoaromatics Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.742291517 8.810032952 8.894237223 8.64484988 8.732963404 8.391312135 8.831080698 8.93470561 8.426447173 8.85379429 8.703411673 8.810263021 63081982 nosZ Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 8.284580598 8.3042949 7.91265801 8.242735918 8.384598186 8.435096305 8.344722521 8.601710454 8.623665864 8.621568304 8.821025048 91770927 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 8.876462295 9.328679193 9.429214884 8.806223289 8.711502906 8.385527532 8.128593317 8.380976091 8.359709911 8.358316472 8.729917999 37925729 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.336020199 8.081520358 7.526082465 7.548386342 7.546855769 7.403586432 7.43413514 7.739267798 7.409979073 7.522392311 7.704167801 33603744 mhpC Organic Remediation Aromatics Aromatic carboxylic acid Bordetella bronchiseptica RB50 8.91069246 8.619215524 8.122941716 8.952693631 8.906068436 8.665127639 8.800859552 8.831726762 8.642219853 8.478376275 8.439242449 149279875 exochitinase Carbon cycling Carbon degradation Chitin Pedobacter sp. BAL39 9.76031834 9.650079976 8.834269402 8.461623751 8.435595969 8.45831376 7.393056916 238918968 nplT Carbon cycling Carbon degradation Starch Edwardsiella ictaluri 93-146 9.094064379 9.163171262 9.390473803 8.645897049 8.411305513 8.508466057 8.247815972 8.08830255 8.359579167 8.317575145 8.353363764 8.57983681 169759394 atzC Organic Remediation Herbicides related compound Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.696915578 8.521526454 8.526605488 8.587580127 8.521822592 7.995354803 8.280009856 8.6785544 8.518455237 8.64586999 8.502347806 8.65019719 99030583 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 8.111767196 8.228893335 8.209105128 7.625258381 7.512006498 7.876139009 8.062088814 7.521912393 7.880282175 7.657646576 7.34454212 114338530 CadA Metal Resistance Cadmium Syntrophomonas wolfei subsp. wolfei str. Goettingen 8.949396461 8.865849715 9.144512224 8.452701831 8.414553406 8.29096137 7.971392134 7.858205288 8.004725764 8.204111669 8.150000806 8.430856534 94471157 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.458031612 8.53693398 8.594167082 8.193137213 8.111808975 7.923976955 7.934026639 7.713393891 7.869697914 7.93003426 7.805371503 8.041080497 212554982 nrfA Nitrogen Dissimilatory N reduction Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 8.807543971 8.734471073 8.667375387 8.243838849 8.071267723 8.172454689 7.776961787 7.996416758 7.988750107 7.865965216 8.029881493 238753639 MATE_antibiotic Antibiotic resistance transporter Yersinia ruckeri ATCC 29473 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia ruckeri; 10.89258458 10.74389635 10.91412314 9.625274777 9.976669387 10.01214207 10.07233427 10.09534427 10.46894588 10.29527621 17548287 proV Stress Osmotic stress Ralstonia solanacearum GMI1000 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 8.123739395 8.207702862 8.270005609 8.185903939 8.085580602 8.067902706 8.229791544 8.058732694 8.323018228 8.018126378 7.868851433 121588308 pstB Stress Phosphate limitation Halorhodospira halophila SL1 8.37291182 8.193066918 8.239095676 8.389492885 8.181946419 7.978890286 7.911322211 8.237374708 7.931914873 8.477976319 8.349597547 8.258377277 224385713 CODH Carbon cycling Carbon fixation Clostridiales bacterium 1_7_47_FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales; 8.758338337 8.704245283 8.966014457 8.234040326 8.211813558 8.155939699 7.640607541 7.9960527 8.186751427 7.990175915 7.990702547 8.377748416 214044219 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 9.132280031 9.059064263 9.031588175 8.78896727 8.61595119 8.871452179 8.776137542 8.67927436 8.639603547 8.786430808 8.74774819 8.917458501 148258457 CadA Metal Resistance Cadmium Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.28829998 8.593813189 8.221089704 8.42016603 8.748455543 8.54397323 8.908059066 8.826449442 8.59570375 8.788485773 8.927998372 8.667166064 29652656 narG Nitrogen Denitrification uncultured bacterium 9.997811274 9.774193294 9.796588329 9.285638696 9.270556975 9.364750692 9.586895548 9.412366947 9.540315938 9.370359583 9.366181203 9.541910841 94497737 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.92868421 8.936357844 8.958518887 8.744530091 8.824463417 8.967684346 8.452104802 9.134432239 8.772500901 9.073856196 9.090690554 8.295968549 256824815 katE Stress Oxygen stress Kytococcus sedentarius DSM 20547 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermacoccaceae;genus:Kytococcus;species:Kytococcus sedentarius; 10.11375323 10.22899701 10.56711497 10.55887531 10.36877075 10.14021129 10.36090706 10.71541167 10.3569712 10.47407359 10.30002589 10.47007047 123440532 oxyR Stress Oxygen stress Yersinia enterocolitica subsp. enterocolitica 8081 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 8.611288773 8.144361598 8.226311556 8.098567917 8.226523341 8.170452735 7.892704504 8.286784332 8.158380153 8.139384417 8.216356639 8.306544178 266619571 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Clostridium hathewayi DSM 13479 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 8.213982241 8.007750312 8.260660913 7.457393854 7.158524829 7.327292267 7.478770016 7.006435197 7.866595371 7.267898137 7.377689249 7.625192184 88791112 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 8.660109611 8.688190663 8.521854381 8.008487496 8.315923602 8.318687457 8.684577245 7.905279519 8.712863307 8.332441395 8.24720219 8.147906957 146188517 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9.47562117 9.462980257 9.306862034 8.903183413 9.021725499 8.84323557 8.692529666 8.898712652 8.728380833 8.769081767 8.815750188 9.202222617 77389215 grpE Stress Heat shock Rhodobacter sphaeroides 2.4.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 8.363187321 8.144704856 7.933846921 7.855252575 7.931812688 8.174437596 8.063852547 8.399986559 7.658991651 7.579505681 7.686218482 56315842 TerD Metal Resistance Tellurium Azoarcus sp. EbN1 8.324617883 8.223370291 8.981617151 7.765048345 7.587108775 8.174557229 7.99307697 8.653974906 7.791709486 8.12714407 8.007406225 229817840 Tet Antibiotic resistance other Bifidobacterium angulatum DSM 20098 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium angulatum; 9.017830461 9.326335445 9.812986539 9.683651516 9.669829662 9.326944103 9.420719508 9.934771422 9.681069082 9.767539993 9.730482018 9.97105922 197294932 mer Metal Resistance Mercury Burkholderia cenocepacia J2315 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 8.61236613 8.868737145 8.718426472 8.547395693 8.247060292 8.15226766 8.499366698 8.302473559 8.399319244 8.207743608 8.169015821 8.121909206 88799542 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 8.370985449 8.24263556 7.718118859 7.605382345 8.393777252 8.433844615 7.982257646 8.560876261 7.71059269 7.969829625 7.764448137 222056738 Tet Antibiotic resistance other Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.72152607 8.643559936 8.58906701 8.379811073 8.135627259 7.826778496 8.225737797 8.237931689 8.275542609 8.189244887 8.285458481 15604433 gyrB other category gyrB Rickettsia prowazekii str. Madrid E superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales;family:Rickettsiaceae;genus:Rickettsia;species:Rickettsia prowazekii; 9.033679283 8.743192102 8.900278825 8.167844571 8.128177073 8.112357724 7.82553905 7.846590017 8.08601206 8.057360528 8.076824149 8.407100948 58001464 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Gluconobacter oxydans 621H superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter oxydans; 8.768049513 8.98008345 8.943569826 8.490870401 8.465456688 8.348644162 8.569921951 8.649569016 8.519264399 8.557380049 8.425200708 8.655500782 157849042 pstB Stress Phosphate limitation Shewanella pealeana ATCC 700345 8.463828186 8.272832467 8.700622122 7.678286572 7.535760399 7.748689604 7.498061851 7.186347728 7.846318568 7.31460061 7.456051357 7.825330173 66572341 MFS_antibiotic Antibiotic resistance transporter Xanthomonas campestris pv. campestris str. 8004 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 10.18167688 10.16339777 10.03581204 9.311890085 9.940238781 10.15371428 9.473029204 10.14524196 9.569623951 9.739639364 9.353343839 170736445 iro virulence Burkholderia cenocepacia MC0-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 9.879281707 9.900966004 9.65407934 9.943298985 9.645118348 9.512196685 10.0648247 9.822447264 9.90709926 10.04516392 9.9962813 9.83586257 116751304 sigma_24 Stress Sigma factors Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 8.507348812 8.658125372 8.599157657 8.078889672 7.976807968 7.863866047 7.521672102 7.652217359 8.115260729 7.78124489 7.746174192 8.071603437 119897969 fnr Stress Oxygen stress Azoarcus sp. BH72 9.113144853 9.076061871 9.018502151 8.834667643 8.895292756 8.866634214 8.950690881 8.757046769 9.161480747 8.821107938 8.728428671 8.78347872 225018077 sigma_70 Stress Sigma factors Clostridium methylpentosum DSM 5476 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium methylpentosum; 7.172519077 6.920840249 7.101105969 113529203 alkK Organic Remediation Others Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.535316273 9.128522986 9.070420137 8.67943955 8.742348513 9.366669919 8.695866179 9.324228584 8.486049782 8.299679472 8.283977879 85111862 BADH Organic Remediation Aromatics Other aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 9.040364756 8.79745658 9.131239284 8.269483294 8.047235692 8.078906358 8.085650583 7.77772401 8.115759551 7.958998931 8.100353612 8.401952664 119671772 pimF Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8.598880113 8.99116268 8.770602309 8.746755481 7.8155181 8.543947526 8.880595569 8.524504855 8.75082381 8.191817109 8.441441086 8.333613306 256759481 AceA Carbon cycling Carbon degradation others Thiomonas intermedia K12 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas;species:Thiomonas intermedia; 8.395805904 8.353347134 8.445631567 8.454062344 8.106183849 8.200497998 8.183631863 8.704328681 8.667931329 8.617121468 8.457417199 8.338838081 121604026 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8.454549207 8.514695033 8.518152558 8.601187362 8.557189646 8.48200341 8.555830006 9.066386447 8.765922128 8.871905333 8.39528334 8.72973159 77378785 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.525442047 7.73375526 7.92191178 7.88522317 7.63730266 7.534941901 7.340090376 7.591318861 119956721 glnA Stress Nitrogen limitation Mycobacterium vanbaalenii PYR-1 9.874796436 9.831230849 9.868376576 9.205552213 9.506829087 9.664801748 10.14629351 9.776808275 10.36827619 9.459707648 9.713188551 9.608812458 78221758 cytochrome Energy process Energy process Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 8.810280551 8.589906669 8.830621781 8.40556519 8.225752543 8.375770643 8.214062054 7.947233309 8.255833668 8.080239157 7.856936405 8.248656399 27526400 silC Metal Resistance Silver Enterobacter aerogenes superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 8.245922596 8.280968952 8.52965226 8.394533194 8.394051242 8.254602684 8.763760159 8.490254464 8.476366695 8.134249663 8.354795934 83630964 gyrB other category gyrB Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 7.821566882 7.84257385 7.57643704 7.21544267 7.688117232 7.876220563 7.84520853 7.537681663 7.534690301 116194796 katE Stress Oxygen stress Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 9.151711263 9.046426262 8.506404884 8.538582399 8.444434458 8.408072143 8.261932783 8.933717405 8.334525967 8.388134958 8.656894618 148259564 MPGS Bioleaching other category Acidiphilium cryptum JF-5 9.971634064 9.660524904 9.886771809 9.402959825 9.19562837 9.197343302 9.583389616 9.345106512 9.14758624 9.433568315 9.429806231 9.426634609 255991050 endochitinase Carbon cycling Carbon degradation Chitin Clostridium thermocellum DSM 2360 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 7.568857058 7.659974125 7.057219278 7.680790725 119376651 ArsC Metal Resistance Arsenic Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.351074129 8.046512729 7.822457133 7.733003318 8.109028593 8.096339469 7.861012603 8.0117022 7.911090984 62003539 narG Nitrogen Denitrification uncultured bacterium 9.746463168 10.12970471 10.45167091 239989791 ABC_antibiotic_transporter Antibiotic resistance transporter Streptomyces roseosporus NRRL 11379 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces filamentosus; 10.09663611 9.909654354 9.886302994 9.219714486 9.402238629 9.46030764 9.313096974 9.15893355 9.413053038 9.49160042 9.478157666 9.675562374 56680518 pcaG Organic Remediation Aromatics Other aromatics Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 9.346756676 8.895358409 8.856818767 8.441046731 8.432357067 8.476298563 8.565581141 8.580802076 8.686436439 8.907760306 9.003089174 262299026 ahpF Stress Oxygen stress Acinetobacter radioresistens SH164 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter radioresistens; 8.903560817 8.885304582 8.990870407 8.863787978 8.753115911 8.524256876 8.837167785 8.989998731 8.597350852 8.853077555 8.811267807 8.783451238 33391309 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.888783813 8.862327314 8.841076863 9.141025964 9.001232149 9.143086187 8.733039341 9.400949898 8.714195029 9.076523889 9.146566495 8.994702434 198260950 ara Carbon cycling Carbon degradation Hemicellulose Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 9.200690016 9.435736501 9.27387947 8.867402023 8.656239149 8.72148066 8.913928459 8.688538087 8.333563277 8.663516016 8.79899069 8.674655786 282579487 sigma_24 Stress Sigma factors Streptomyces sp. ACT-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.427394038 8.954894979 8.558842294 8.06720069 7.971544391 8.485927907 8.763782297 8.128120141 8.684650317 8.019912788 8.472551228 8.09686982 229204750 pstC Stress Phosphate limitation Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 8.510176522 8.24428678 7.759967745 8.376645523 8.250063264 8.134801243 8.01271698 8.020315933 7.921143909 198283933 ABC_antibiotic_transporter Antibiotic resistance transporter Acidithiobacillus ferrooxidans ATCC 53993 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 9.670115007 9.688401242 8.839165586 9.830525853 9.874519675 9.763217769 9.519716847 9.688296863 9.174045108 9.605379808 9.411354973 9.173415943 94471335 narG Nitrogen Denitrification uncultured bacterium 9.429240474 9.283359764 8.82386979 9.368855669 8.413497692 8.49111326 8.537531343 8.247697591 209517396 linB Organic Remediation Pesticides related compound Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.308892051 8.134107296 8.627740076 8.073877095 8.040476619 7.682525663 7.610287482 7.359041316 8.208047118 7.475520443 7.493102713 7.620505781 169786817 merB Metal Resistance Mercury Mycobacterium abscessus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.627127405 8.883912556 8.781662548 8.697054158 9.01610246 9.123511007 9.167037613 9.305934728 8.848972628 9.305893238 9.37338441 8.927576985 2353014 gyrB other category gyrB Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 9.023947146 8.780117907 9.082912236 8.347981876 8.214908029 8.209193647 7.901321355 7.90080336 8.36229292 7.728758475 7.913240581 8.34731453 126348664 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces ambofaciens ATCC 23877 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ambofaciens; 9.370866834 9.037625612 8.983792368 8.713824167 8.634064034 8.775704267 9.090157068 8.679807303 8.877455117 8.91001569 8.883767452 8.585692551 120591141 fnr Stress Oxygen stress Acidovorax citrulli AAC00-1 9.203992976 9.105930668 9.282274682 8.621117385 8.494128734 8.690948716 8.561900409 8.538583354 8.721905379 8.447099653 8.586521795 8.773305018 209528490 amoA Nitrogen Nitrification superkingdom:Bacteria; 9.222251566 9.226302682 9.350716143 8.781893879 8.513297661 8.597202462 8.548210818 8.416939161 8.464094419 8.33540946 8.21203017 8.706960596 109290285 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.03541474 7.965180801 7.642309106 7.873135353 7.463809288 7.79693303 7.636739657 7.234404763 7.610572063 157406192 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 8.651752411 8.632007115 8.491747385 8.201137929 8.25263024 8.019343986 7.995100255 8.412122093 7.999123674 8.140343565 8.251382348 8.268654031 187424957 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Akkermansia muciniphila ATCC BAA-835 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Akkermansia;species:Akkermansia muciniphila; 8.273751884 8.398379575 8.743128597 7.999220755 7.933349324 7.927679677 7.785501518 8.000596455 8.107749241 7.938897932 7.884282782 8.058125869 213970657 nmoA Organic Remediation Aromatics Nitoaromatics Pseudomonas syringae pv. tomato T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 9.206354051 9.394508998 9.233081065 8.567255607 8.269389028 8.487837547 8.161531568 8.100500463 8.524206289 146342967 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.381458053 8.819586918 8.396220762 8.424135463 8.225788823 8.338040141 8.705644618 8.42810258 8.544108765 8.522867347 8.523401729 86606219 pstB Stress Phosphate limitation Synechococcus sp. JA-3-3Ab 7.436766697 7.51577026 7.487332625 7.09669133 7.22846122 7.332626126 6.961359693 7.254821599 193873644 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium superkingdom:Bacteria; 8.302658999 8.072475363 7.776269036 7.831590478 7.886119318 7.772590292 8.477009508 8.280841827 8.370711551 8.18936535 8.097899078 85062816 AmiE Organic Remediation Aromatics Other aromatics Nocardia sp. YS-2002 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia; 8.493515012 8.323800952 8.281294147 8.264652722 8.289273843 7.921541916 8.021636968 8.252422951 8.080567389 8.24696896 7.865838318 167561823 ChrA Metal Resistance Chromium Burkholderia oklahomensis EO147 10.83618945 10.69650466 10.26372977 11.12832662 10.97457534 11.11975209 10.56387983 10.8458338 10.47876403 10.90507004 11.12430829 10.64640953 256769453 glx Carbon cycling Carbon degradation Lignin Streptomyces sp. C superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 9.524503278 9.258929617 9.341841093 8.7169774 8.965611583 9.175586316 9.653897399 9.080411678 9.769772667 9.019066428 8.809569886 9.345781472 76559225 pstB Stress Phosphate limitation Natronomonas pharaonis DSM 2160 8.55171967 9.057050055 8.754713118 8.20304079 8.505853756 8.874474559 9.218082448 8.211013335 9.131413553 8.14763209 8.252638504 8.502415355 51855753 ahpC Stress Oxygen stress Symbiobacterium thermophilum IAM 14863 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVIII. Incertae Sedis;genus:Symbiobacterium;species:Symbiobacterium thermophilum; 9.641255639 9.617180573 9.537597966 9.435913638 9.321129685 9.151661941 9.471145465 9.34172485 9.085230152 9.32593468 9.400063431 9.160631792 209522555 MFS_antibiotic Antibiotic resistance transporter Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 9.632328307 9.413503342 8.98298499 9.82043365 10.00855528 10.10408606 9.444925671 10.16610164 9.183796519 9.751670145 10.09794579 164655172 katE Stress Oxygen stress Malassezia globosa CBS 7966 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Exobasidiomycetes;order:Malasseziales;family:Malasseziaceae;genus:Malassezia;species:Malassezia globosa; 8.990747756 8.743822505 8.913775084 8.088652018 7.984220738 8.422119525 7.978904797 8.032579207 8.275468204 8.084490526 8.126705174 8.271867412 118051341 ChrA Metal Resistance Chromium Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.802997972 8.839314048 8.859821688 8.484122058 8.377197905 8.45503242 8.302808822 8.310969787 8.437023488 8.578983371 8.571474696 8.472175106 24985196 PobA Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.375935405 8.270292933 8.359644659 8.432236028 8.13039551 8.388455261 8.691287334 8.632663119 8.704318093 8.439612696 8.592969232 171325328 gyrB other category gyrB Geobacillus sp. WCH70 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.38386066 8.395917737 8.196569055 7.871040588 7.998818551 7.944527364 8.076385495 8.116045434 8.118954218 8.083399063 219946951 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Methylobacterium nodulans ORS 2060 9.273842212 9.227316235 9.187065928 8.738090267 8.809136509 9.049655398 9.259631575 8.836522633 9.295783759 9.032457318 9.191976852 9.093868384 194541386 amyA Carbon cycling Carbon degradation Starch Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.992799642 8.13241639 7.433269158 7.280669467 6.860116554 7.094575954 7.390019903 7.297984287 7.433739187 124259005 chnB Organic Remediation Other Hydrocarbons Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 8.32372725 8.363397106 8.417904477 7.769693972 8.599314313 8.509567068 8.608005672 8.328027546 8.707872852 8.107980536 8.305614275 8.210636291 199604860 pstB Stress Phosphate limitation Salmonella enterica subsp. enterica serovar Virchow str. SL491 9.120496604 9.070163779 9.061928537 8.960698905 9.088546835 9.13357931 8.601193809 9.273226779 8.831422888 9.133726053 9.470996225 8.952534894 14389227 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.694108025 8.424588646 8.412056682 8.075594805 8.058929624 8.416777234 8.213499383 7.994984253 8.161487333 8.678046447 8.246827299 254386685 fnr Stress Oxygen stress Streptomyces sp. Mg1 9.13783678 9.132887382 9.069925057 8.608982702 8.734764058 8.725939025 8.43929147 9.023479714 8.829875364 8.852781231 8.70321621 83840285 oxyR Stress Oxygen stress Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 8.720985289 8.736442789 8.970811038 8.758334094 8.490637421 8.196948232 8.686262486 8.69501423 8.69408688 8.391820894 8.205575063 8.555506329 37548708 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.544039837 8.338245905 8.289263618 8.318230381 8.350179597 7.983538214 8.207821586 8.223889934 8.266098062 8.375183328 7.577936568 26992063 SilA Metal Resistance Silver Pseudomonas putida KT2440 9.066586376 8.583983354 8.948541992 9.121151456 8.884799183 8.540522631 8.767314514 9.263734947 8.833585375 8.985432959 8.819995591 9.08371428 157694307 bglH Stress Glucose limitation Bacillus pumilus SAFR-032 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pumilus; 8.531929944 8.696018562 8.144655827 7.805889459 7.725783926 7.849209308 8.505117908 8.023010651 8.077793629 7.801464696 7.385675861 7.809798578 39936504 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.970958065 9.907896816 9.806644902 9.547738211 9.40456082 9.269201417 9.549569853 9.545244349 9.740953755 9.584575328 9.731871314 9.255405573 91681827 pstB Stress Phosphate limitation Rhodopseudomonas palustris BisB5 9.512073669 9.334917356 9.154427824 8.984876639 8.925795859 9.001080308 9.107744009 9.014247174 9.383166514 8.936781818 9.259195725 8.988017291 113529319 nagK Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 9.503694705 9.603436687 9.721875038 9.683231546 9.77242014 9.484166436 9.656173002 9.842741373 9.895564549 9.979662852 9.820262316 9.786630456 229557408 ahpF Stress Oxygen stress Listeria grayi DSM 20601 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria grayi; 8.099589984 8.352142706 6.922948401 7.117382759 7.334402604 6.895165025 6.966179363 1183925 pstB Stress Phosphate limitation Mycobacterium intracellulare 9.732624057 9.77701509 9.26820432 8.697653486 9.673265835 10.00031638 9.069324519 9.626371402 9.07127722 9.222373641 8.837533343 119859401 tfdA Organic Remediation Aromatics Chlorinated aromatics Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.301866125 8.301934697 8.213104779 7.883949639 7.956258752 8.524411379 8.506102769 8.266801028 8.531080579 8.031939099 7.939864383 8.080052973 166091247 ureC Nitrogen Ammonification Microcystis aeruginosa NIES-843 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 8.963482263 8.430836118 8.664631397 8.615568317 8.263845653 8.161475927 7.890388234 8.088788077 8.290583778 8.056824501 8.112897962 8.250953419 27355265 chnB Organic Remediation Other Hydrocarbons Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.647277141 8.394919094 8.429426412 7.999182574 7.864346763 7.667467756 7.765916573 7.429914562 8.150486442 7.559195366 7.367996473 7.814980427 62085680 gyrB other category gyrB Gordonia bronchialis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 8.896756132 9.035829199 9.40247545 9.195001857 9.054554565 8.71816283 8.999876273 9.515659726 8.982696126 9.172186167 9.000906793 9.337345652 29343376 nplT Carbon cycling Carbon degradation Starch Enterococcus faecalis V583 9.018351971 8.794624283 9.094923116 8.384373088 8.054623133 8.157235072 7.894466815 7.711550138 7.886044337 7.982596266 8.322614366 161729059 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 7.735118608 7.73251114 7.702314087 7.224799879 7.731960403 67086625 SMR_antibiotics Antibiotic resistance transporter Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 9.250236238 8.985556981 9.145736162 9.203872567 8.879902455 8.685884064 8.793124536 8.98061197 9.203504688 9.055728822 8.977934946 8.624978793 73763054 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.692464857 9.503342454 9.548225042 9.174586063 9.112050763 8.959381457 9.321494026 8.960009412 9.549409568 9.240247301 9.330686486 9.154019924 72122187 pcaG Organic Remediation Aromatics Other aromatics Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.464111311 9.023057202 8.762476284 8.584334708 8.49409909 8.708549655 9.038947152 8.514072168 8.966684535 8.581093574 8.854818695 8.660965331 118472845 linB Organic Remediation Pesticides related compound Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.050664511 8.13859663 7.262645359 7.730007498 7.501748319 7.090404056 7.250362322 7.18915734 7.630586243 258531509 AceB Carbon cycling Carbon degradation others Pantoea sp. At-9b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 8.159305003 8.249290789 7.926864275 8.202021272 8.263222704 8.274267122 8.503645628 8.469253694 8.839556239 9.122007019 8.322345929 22294641 linB Organic Remediation Pesticides related compound Thermosynechococcus elongatus BP-1 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Thermosynechococcus;species:Thermosynechococcus elongatus; 9.686258951 9.537899007 9.814899241 8.948772981 8.818091825 8.868789511 8.537983756 8.390657139 8.48796181 8.613334358 8.764762865 9.018491374 118430485 CODH Carbon cycling Carbon fixation Stappia sp. BrT7 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Stappia; 8.833203629 8.912108848 8.34609201 8.811057006 8.86288853 8.613351565 8.643997043 9.107459007 8.681072187 8.835222619 8.899872011 8.568563431 145221500 CadA Metal Resistance Cadmium Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 9.944734204 9.809713417 9.719930977 10.54316563 10.10809539 9.578729048 10.02102244 10.30111868 10.15299537 10.17059902 10.08096175 9.612054236 154248643 pcc Carbon cycling Carbon fixation Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.313887407 8.032189293 8.591244995 8.218120524 8.151323948 7.728732136 7.923868968 8.464223961 8.365379877 8.234498954 8.216194283 8.436496272 55230728 narH Stress Oxygen limitation Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 9.090492639 8.890499986 9.042023917 8.71616383 8.508643857 8.369620343 8.32817643 8.54814226 8.075993851 8.571288231 8.555865937 8.66916759 94471313 narG Nitrogen Denitrification uncultured bacterium 8.780237916 8.411806496 8.544424434 8.006886099 7.892249874 7.800367691 7.805965263 8.154470063 7.904277922 8.018465377 8.283615126 198042132 exaA Organic Remediation Chlorinated solvents Pantoea agglomerans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 8.25464565 8.051889812 8.459815051 7.563287893 7.453367232 7.399900014 7.754515675 7.36716198 7.658800525 7.580465743 7.69121212 179345712 pstB Stress Phosphate limitation Methylobacterium populi BJ001 8.086607053 8.070206548 7.684742873 7.487197529 7.593298016 7.601418213 7.613282628 7.820148235 7.710093425 7.660263442 7.653241681 77957789 SMR_antibiotics Antibiotic resistance transporter Yersinia bercovieri ATCC 43970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 8.490137971 8.666970966 8.597423302 8.34493319 8.600930785 8.859323742 9.195410367 8.783289112 9.514363671 8.642474255 8.604444348 8.37169118 32307903 narG Nitrogen Denitrification uncultured bacterium 8.324512568 8.267859656 7.920696597 8.23184453 8.265892352 8.441346974 8.085829136 8.317932964 7.926267937 8.133593462 7.928834706 18076026 merP Metal Resistance Mercury Pseudomonas sp. superkingdom:Bacteria;phylum:Proteobacteria; 8.600770136 8.820234944 8.702145418 8.483467305 8.611720052 8.853444212 8.863434006 8.953759655 9.038179663 9.139707466 8.859014025 8.813043468 254512967 sigma_24 Stress Sigma factors Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 8.738919464 8.6680465 8.717285808 8.205034567 8.023575544 8.195470544 8.580719386 8.678893514 8.24458601 8.609465495 8.469407315 8.537316598 148550997 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.220063588 7.808166374 8.0300632 7.763319249 7.467103326 7.863788646 7.766400556 7.884265196 7.539215344 7.726693455 7.41656451 238793120 pstC Stress Phosphate limitation Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 8.701680248 8.668551868 8.627104659 8.133533709 8.083088691 8.122030001 7.73001162 7.817115421 7.772403305 7.728908362 7.99566929 184195307 ArsC Metal Resistance Arsenic Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.248115662 8.368984101 8.474893694 8.351482252 7.916972777 7.979017298 8.274902482 8.081435356 8.38309801 8.280678493 8.13794702 8.444796721 148842236 pstB Stress Phosphate limitation Planctomyces maris DSM 8797 8.134736985 8.005152899 7.986198564 7.409715744 7.590185592 7.673459425 8.300152752 7.7242563 8.043256129 7.747616459 8.133632693 225575561 pstB Stress Phosphate limitation Blautia hydrogenotrophica DSM 10507 8.17684641 7.826181042 7.063702493 7.022851133 6.428780947 7.601277476 6.920268947 7.50491048 126096670 sigma_24 Stress Sigma factors Actinobacillus pleuropneumoniae L20 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus pleuropneumoniae; 8.356144468 8.333150216 8.569929834 7.680634368 7.534927036 7.818612285 7.771654311 7.252718367 7.896164314 7.707887851 7.704480997 7.992006347 221533421 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 9.26834099 7.872950861 8.839703207 9.361816959 9.496572078 9.171593095 9.171701332 9.450490964 39972653 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 8.19136584 8.358063971 8.14813401 8.020336386 7.915926292 7.747568949 8.254720097 7.220821291 7.488622791 7.609382402 7.725731207 239826844 B_lactamase_C Antibiotic resistance Beta-lactamases Geobacillus sp. WCH70 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 9.121260745 9.210032385 9.222012775 8.768060499 8.486928374 8.64352708 8.606751384 8.352126728 8.739509655 8.528895355 8.442237708 8.61970193 54024592 linB Organic Remediation Pesticides related compound Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 9.259287828 8.999418871 9.033775591 8.953621407 9.139098794 9.162506722 9.372446798 9.205763968 9.234706215 9.086177549 9.509527925 9.412781955 73762890 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.7792238 8.639556402 8.962981776 8.565249319 8.533644744 8.551365031 8.043792157 8.38335858 8.494265901 8.163654712 8.491703124 8.261723177 89209970 gyrB other category gyrB Halothermothrix orenii H 168 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Halanaerobiales;family:Halanaerobiaceae;genus:Halothermothrix;species:Halothermothrix orenii; 9.505045112 9.528279713 9.555778129 8.955006873 8.90072523 8.770821905 9.027242296 8.737721816 8.788294445 8.772401111 8.711698891 9.132376169 118759687 phtA Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.210270547 8.253433427 8.302608082 8.396593031 8.314215526 7.940684551 8.223971611 8.182220827 8.299126745 7.981069088 7.848880855 8.123298663 118618327 trzN Organic Remediation Herbicides related compound Mycobacterium ulcerans Agy99 9.313427593 9.406353259 9.410837286 8.426639953 8.785859653 8.750965299 8.906279765 8.302697532 8.775482229 8.463506079 8.761023634 256670306 pstC Stress Phosphate limitation Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.337627758 8.300047561 8.741926807 8.057044483 7.934583445 7.905600289 7.908977363 7.610101997 8.376692475 8.021631346 7.891125327 7.861211453 163794934 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 8.895967178 8.686765984 9.090961837 8.601093561 8.534541151 8.354540226 8.338826255 8.510662313 8.712911211 8.549097156 8.735048364 148569202 glnA Stress Nitrogen limitation Roseiflexus sp. RS-1 8.298688279 8.108642473 8.093097374 7.939210882 7.626963666 7.951804267 7.777847441 7.518133392 7.565754243 7.784276203 7.785555714 7.694727774 214031709 phn Organic Remediation Herbicides related compound Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 9.038233458 9.00393693 8.823150167 8.908568848 8.894162152 8.700505364 8.660848964 8.893649134 8.740200033 8.805032919 8.804465432 9.019314868 118424484 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.545430086 8.34655855 8.003389355 7.986198674 8.147754684 8.253427085 8.506362057 8.266201839 8.291171483 8.529818147 8.58215631 8.458516362 150385878 ara Carbon cycling Carbon degradation Hemicellulose Victivallis vadensis ATCC BAA-548 superkingdom:Bacteria;phylum:Lentisphaerae;family:Victivallaceae;genus:Victivallis;species:Victivallis vadensis; 7.669760376 7.660056775 7.511569987 7.567358036 7.795513902 8.171894317 7.923173819 7.774935465 7.900875298 225016928 cda Carbon cycling Carbon degradation Starch Clostridium methylpentosum DSM 5476 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium methylpentosum; 9.145254266 9.229492737 9.321111595 8.5787716 8.19963242 8.336183133 8.589042986 8.292183486 8.544400252 8.467010042 165926171 pstB Stress Phosphate limitation Yersinia pestis biovar Orientalis str. F1991016 8.504714067 8.597268025 8.593838576 8.424257022 8.283130123 8.185221771 8.380320123 8.068619783 8.421128518 7.819866538 7.887811172 8.253766611 3378437 pchCF Organic Remediation Aromatics BTEX and related aromatics Novosphingobium aromaticivorans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 9.143858713 9.194557491 9.2094303 8.432384894 8.62789892 8.636399106 8.84258427 8.805627082 8.703979333 9.188111411 9.305445947 9.059264301 151302179 APS_AprB Sulphur adenylylsulfate reductase Desulfocaldus sp. Hobo superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;genus:Desulfocaldus; 9.010620998 9.336577284 9.085443748 8.610586852 9.441891335 9.635644786 9.214164359 9.374066139 8.950171421 8.989674144 9.310932473 260589980 phoB Stress Phosphate limitation Blautia hansenii DSM 20583 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Blautia;species:Blautia hansenii; 8.69955738 8.764733542 8.773773055 8.333879465 8.184911295 8.211502638 7.856072973 8.181322664 8.173241167 8.40225487 8.430997729 8.551280443 207727919 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia solanacearum MolK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 9.166588492 9.105771923 8.830561494 8.938964144 8.891405227 8.635559708 8.821293212 9.117250176 9.157806354 9.076229651 8.774539248 8.99645919 261877502 sigma_70 Stress Sigma factors Selenomonas noxia ATCC 43541 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas noxia; 8.954788566 8.585278147 8.52282156 8.434324662 8.698905848 8.312567907 8.33800536 157084216 phoA Stress Phosphate limitation Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 8.222250403 8.284957101 7.57365998 7.976209383 8.352393714 7.725867912 8.07833193 8.003021488 7.946613403 8.018796935 7.908811388 182382486 narG Nitrogen Denitrification uncultured bacterium 8.67785525 8.693404752 8.646341326 8.943728391 8.616378345 8.447873526 8.81774368 8.691593694 8.655750725 8.636953146 8.393184618 8.518325027 70905132 nirK Nitrogen Denitrification Alcaligenes sp. H superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes; 7.966781926 7.601037267 7.513121339 7.604009883 2588983 phdI Organic Remediation Aromatics Polycyclic aromatics Nocardioides sp. 8.605269962 8.714819866 8.749043947 8.906774124 8.589171479 8.496773516 8.473344169 8.583339135 8.695220846 8.518079491 8.577736775 8.719740932 157144925 xlnD Organic Remediation Aromatics Other aromatics Citrobacter koseri ATCC BAA-895 8.722902517 8.56602249 8.547402334 7.990482148 8.001264289 7.855947695 7.540240383 7.528955471 7.602479078 7.700228557 8.014968045 283474525 sigma_24 Stress Sigma factors Xanthomonas albilineans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas; 8.946131762 8.563190459 7.875431672 7.984707816 8.088163325 8.082059686 7.665767949 8.205926856 8.187309316 8.235343958 24372434 cytochrome Energy process Energy process Shewanella oneidensis MR-1 9.10645722 9.060980288 8.693295832 8.389827271 8.497025715 8.915634322 9.199514052 8.891248716 9.459679794 8.717177322 8.820368693 8.700606567 118057424 pcaG Organic Remediation Aromatics Other aromatics Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 8.909301129 8.865346586 8.509943393 8.751103185 8.997342227 8.746832498 8.592609846 9.182881223 8.655511572 8.936202124 8.794098399 8.839958227 219859769 obgE Stress Radiation stress Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 8.841150117 8.664740661 8.68508588 8.715108769 8.863679774 8.532802321 8.705783871 9.029090097 8.732951102 8.896747169 8.725496834 8.867666684 218885637 cytochrome Energy process Energy process Desulfovibrio vulgaris str. 'Miyazaki F' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 8.31887721 8.70574601 8.480360656 8.257661586 8.252604062 8.788774237 8.919062948 8.488900233 9.014411482 8.309718219 8.29184875 8.688024039 27348590 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.24042922 8.167324868 8.355358091 8.304908327 8.16277385 8.330747637 7.866527416 8.370656872 8.046460952 8.190506484 8.399790491 7.791952117 221083300 ChrA Metal Resistance Chromium Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 9.875748682 9.381430101 9.523038358 9.147717855 9.039605529 8.907808944 8.913771751 8.974261231 8.941184832 9.01482634 9.062806132 9.321933167 156190313 TerC Metal Resistance Tellurium Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 8.340901042 8.554837908 8.50059327 8.264623761 8.189276173 8.04849897 8.194537095 8.302271528 8.319361243 8.433779444 8.270918224 8.395223274 156058398 phoA Stress Phosphate limitation Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 9.255653626 9.20288321 9.516782486 8.561960216 8.467011478 8.439655627 8.242833385 8.300915259 8.119623275 8.489549143 8.695977372 126736885 pstB Stress Phosphate limitation Roseobacter sp. SK209-2-6 8.796510247 8.869245699 8.957419965 8.476155452 8.409666212 8.702471524 8.943726712 8.815244826 8.961058028 8.758310323 8.802673118 8.688751702 158140353 pstB Stress Phosphate limitation Alkaliphilus oremlandii OhILAs 9.045168074 8.824899895 9.063128744 8.430317414 8.162948107 7.784100182 7.84357532 8.328882793 8.020578646 8.089228368 8.400194092 114541731 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.529951834 8.318233233 8.628116677 8.183162271 8.053658157 8.049004073 8.021567582 8.152551455 8.496013091 8.02331179 7.884586541 7.948475116 120559586 CopA Metal Resistance Copper Shewanella sp. W3-18-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 9.576177205 9.637733964 9.605444551 8.832939939 8.814459517 8.970607813 8.99149163 8.427951972 8.99828366 8.59842318 8.709114324 9.03848113 3372159 nifH Nitrogen Nitrogen fixation unidentified bacterium superkingdom:Bacteria; 8.248146695 8.342640183 8.105236451 8.013000674 7.744548306 7.397290812 7.871475936 8.015534405 7.70179389 7.885357048 7.974019134 212544358 nagG Organic Remediation Aromatics Aromatic carboxylic acid Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 8.276347008 8.020522008 8.411295783 7.157181136 7.094103383 7.333606553 7.402169083 7.048442462 7.707943353 7.3478171 7.331489381 7.64480115 84043065 pcaG Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 8.903920216 8.951675374 9.178190372 9.140755688 9.218221127 9.200889323 8.811834168 9.354117679 8.655964768 9.319644308 9.296732712 9.460996205 54018348 TerZ Metal Resistance Tellurium Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 8.224358408 8.344537063 7.937986529 8.042026569 8.271571642 8.557419506 8.614874666 8.135287623 8.637252138 7.980987588 8.054422297 8.327525589 68200936 nmoA Organic Remediation Aromatics Nitoaromatics Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.487660759 8.928453474 8.768147044 7.90300134 7.958029027 8.012347247 8.423915033 8.025248439 8.484406211 7.999136607 8.094964312 7.965622566 260091396 ABC_antibiotic_transporter Antibiotic resistance transporter Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 8.351067374 8.338068095 8.513170563 8.358043296 8.099733193 7.894881679 8.049263325 8.412125668 8.068956325 8.43687507 8.227606035 8.126206643 167588514 fnr Stress Oxygen stress Burkholderia ubonensis Bu 7.990184225 7.98875332 7.830591406 7.345306187 7.889441463 7.778237619 7.920383719 7.600492932 7188931 pmoA Carbon cycling Methane Methane oxidation Methylosinus trichosporium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylosinus; 9.279362019 9.34122354 9.176561924 8.698160921 8.576420688 8.926410508 9.23975656 8.754353076 8.710251194 8.685452149 8.937671423 8.734731498 226312556 fnr Stress Oxygen stress Brevibacillus brevis NBRC 100599 7.270879817 7.320197937 7.353796578 6.904965356 6.90855144 7.671537486 7.244500563 7.002749438 6.998250839 115390791 pcpE Organic Remediation Herbicides related compound Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 8.994360283 9.069635056 9.030542037 8.239296577 8.40621676 8.68311583 9.225955927 8.561935799 9.232873451 8.305233495 8.290557186 8.465577876 120593479 sigma_70 Stress Sigma factors Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8.78476749 8.918212864 8.93016945 8.984225529 8.976860146 8.737497741 8.760673738 9.094285508 8.874329894 9.144406918 9.240137482 9.106600656 38200127 inv virulence invasion Corynebacterium diphtheriae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium; 8.180324651 7.925443379 8.065048293 7.167615701 7.217905161 7.021524237 6.700804537 6.727815082 7.365725339 7.292221833 7.392750079 6.923019972 63258456 katE Stress Oxygen stress Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 8.537918124 8.300005562 8.318139828 7.748885725 7.58859334 8.158533116 8.067820923 8.079597418 7.905003401 7.871256181 7.766220118 254566553 grpE Stress Heat shock Pichia pastoris GS115 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Pichia;species:Pichia pastoris; 8.052752137 8.282764304 8.496542308 8.384736392 8.26029702 8.030370049 7.397747354 8.439914005 7.833489751 7.771961591 7.866713951 7.553587275 151424226 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Sulfurovum sp. NBC37-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;genus:Sulfurovum; 8.343478154 8.273979174 8.651771261 7.867727043 7.9384441 7.79666354 7.616210274 7.784062123 7.946149537 7.595076155 7.909584157 196212310 Al Metal Resistance Aluminum Geobacillus sp. G11MC16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.790851303 8.548093488 8.435478203 7.884182847 7.941205334 8.173570527 8.122830707 7.414941593 8.126027264 7.69546207 7.51379106 8.13283158 261285157 pstB Stress Phosphate limitation Geobacillus sp. Y412MC10 8.999686511 8.723911031 9.000405274 8.304040693 8.46278758 8.570622439 8.730645096 8.672679256 8.587210499 8.278605516 8.662953964 8.483453151 225698234 phenol_oxidase Carbon cycling Carbon degradation Lignin Clavariopsis aquatica superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Microascales;family:Halosphaeriaceae;genus:Clavariopsis; 7.27351205 7.284522291 7.027471646 6.758581186 7.039281603 7.211090835 6.88475374 7.171212466 118472931 CDH Carbon cycling Carbon degradation Cellulose Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.727884268 8.918737583 8.786847945 9.081793283 9.357271545 9.080782599 9.08874355 9.333198203 8.998166267 9.136505751 8.998373852 9.070598755 146401273 fnr Stress Oxygen stress Acidiphilium cryptum JF-5 8.679742829 9.001856283 8.553303783 8.378191498 8.055542987 8.125088999 8.019231531 7.66922506 8.265625671 7.908324992 7.875437604 8.150919337 145594547 CadA Metal Resistance Cadmium Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 9.413876994 9.274508686 8.871454564 9.248373129 8.988131995 8.635925382 108804637 fnr Stress Oxygen stress Rubrobacter xylanophilus DSM 9941 9.455323439 9.4314262 9.459070163 9.184192577 9.152919193 9.032220691 8.989831227 8.919398624 9.062498076 9.085907722 9.451626685 9.110500966 39996434 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 8.533282716 8.336069826 8.518968146 8.34146134 8.18928798 8.383739853 7.846158417 8.45809381 8.176600726 8.390001346 8.407525784 8.107870275 254430983 ppk Phosphorus Phosphorus utilization Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 8.792609295 8.750324369 8.540233288 8.968265986 8.853024662 8.909629077 9.310957345 9.23140282 9.018974786 9.122304194 56908602 alkK Organic Remediation Others Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 8.095481691 7.943688953 7.337083308 7.093541724 7.646874383 7.478601651 8.196140392 7.215689891 7.178452288 196229358 sigma_24 Stress Sigma factors Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 8.543632376 8.899345348 9.048610779 9.141331111 9.06131962 8.706786895 8.732567653 9.500252181 8.799120656 9.220577807 9.001329241 9.297287621 19032662 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 8.534268971 8.624509612 8.503482777 7.534030159 8.023909973 8.475836808 8.721366803 7.556903308 7.987212932 8.169075709 7.758310764 154352839 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bacillus amyloliquefaciens FZB42 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 8.016070066 8.477360546 7.605230288 7.867756138 7.895370753 8.295326158 7.233891135 8.179926346 7.722104968 7.567590424 7.961622784 119478555 pimF Organic Remediation Aromatics Aromatic carboxylic acid marine gamma proteobacterium HTCC2143 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.657497007 7.168448261 7.468838449 7.234903765 7.484040056 7.45057701 7.360887007 261285325 glnA Stress Nitrogen limitation Geobacillus sp. Y412MC10 7.544830367 7.418053033 7.32362939 7.205052106 6.808420846 7.797211368 7.105578724 7.166059992 119391529 narG Nitrogen Denitrification uncultured bacterium 8.595344908 8.194299461 8.667432154 7.852228428 7.543469083 7.564328931 7.763244551 7.492932297 7.547462181 7.829496774 7.352712134 7.643738268 146338520 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.144240163 7.896895171 8.192020027 8.103518705 8.028074148 7.850453305 8.017729673 7.955349018 8.121268508 7.78210174 7.930133463 7.843765538 159038460 glucoamylase Carbon cycling Carbon degradation Starch Salinispora arenicola CNS-205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 7.961240445 8.06259485 7.22203805 7.79726328 7.561804735 7.371484441 7.601586316 3157544 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 9.418731727 8.854951122 8.944342396 9.199093224 9.076252191 9.043831925 9.37862408 9.007066611 9.139093772 9.150399614 9.271861074 9.100254527 108765878 CadA Metal Resistance Cadmium Rubrobacter xylanophilus DSM 9941 8.878103682 8.959290458 8.889268378 7.994924717 7.898350449 7.967967024 8.532619999 7.932795175 8.876054525 8.019364126 8.118410588 7.834669442 195941115 ppx Phosphorus Phosphorus utilization Escherichia coli O157:H7 str. EC4024 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 11.16955008 10.85701662 11.35368446 10.86873593 10.80395891 10.49799891 10.60054013 10.70767833 11.17663438 10.83204449 10.88770571 11.10868021 115364891 sigma_24 Stress Sigma factors Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 8.569350818 9.014522213 8.717258778 8.031396796 7.75414588 8.775292878 8.880241358 8.417356484 8.692512466 8.096966717 8.262545235 8.30469163 108762601 pimF Organic Remediation Aromatics Aromatic carboxylic acid Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 8.99230528 8.819670886 8.958675404 9.019724615 8.903522727 8.735991865 8.897264427 8.959789695 8.719328106 8.808214458 8.852412073 8.809061839 126618476 ahpC Stress Oxygen stress Cyanothece sp. CCY0110 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.511470668 8.480128427 8.615066866 8.05105963 7.743224377 7.837151064 7.722207035 7.49334568 7.862759509 7.753128938 7.798117275 8.191219759 91975500 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 10.12338728 10.16711872 10.16120488 9.48760178 10.09983357 9.990113623 10.37966051 9.233029637 9.888273468 9.918607468 9.868172148 225420269 nplT Carbon cycling Carbon degradation Starch Clostridium asparagiforme DSM 15981 8.268389407 8.298669764 8.668519998 7.696081702 7.200803233 7.594135288 7.492594472 153803981 cydB Stress Oxygen limitation Campylobacter hominis ATCC BAA-381 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter hominis; 8.887672397 8.967110848 9.075576395 8.223327402 7.880987218 8.333977194 8.390267561 8.001237318 8.47894811 8.013186465 8.188283754 8.48170271 197301590 cda Carbon cycling Carbon degradation Starch Ruminococcus lactaris ATCC 29176 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus lactaris; 8.590645992 8.357865876 8.533065077 8.458858413 8.363197028 8.36435186 8.539159438 8.434000848 8.240011089 8.371349552 8.793833496 8.446758459 120595540 AceB Carbon cycling Carbon degradation others Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 9.471461276 9.376486792 9.121346922 8.697836264 8.618183497 8.534609901 9.011826831 8.503223545 9.107837872 8.728178564 8.890088098 8.792268599 91787940 Catechol Organic Remediation Aromatics Other aromatics Polaromonas sp. JS666 8.794253494 8.672559776 8.955748042 8.577392316 8.544478453 8.245969788 8.335396499 8.542806345 8.344011637 8.523114817 8.501214108 8.581227316 169886551 pstA Stress Phosphate limitation Synechococcus sp. PCC 7002 8.317701962 8.183648921 8.176851313 8.467861978 8.585919087 8.582182778 8.772000833 8.54447256 8.913258594 8.856225965 8.57355241 221723290 nagG Organic Remediation Aromatics Aromatic carboxylic acid Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.210635368 8.104251205 7.330635863 7.411773869 7.900877506 8.072469337 7.34442057 7.516683014 7.369171212 7.4647714 7.697387562 157411494 napA Nitrogen Dissimilatory N reduction uncultured prokaryote 8.077959261 7.976870615 7.072605114 7.317542414 6.893507601 7.637814309 7.037250383 6.85798452 7.276142443 120324895 pimF Organic Remediation Aromatics Aromatic carboxylic acid Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 8.410179317 8.371527574 8.329131765 7.687128858 7.759835059 7.946909442 8.307076496 7.72250852 8.272719651 7.881932892 7.580187476 7.729358233 126630170 mer Metal Resistance Mercury Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 8.291204158 8.22103421 7.97271003 7.766209788 7.982720829 7.886506751 8.107296656 8.206154519 7.836461367 8.01965598 23100011 amyA Carbon cycling Carbon degradation Starch Oceanobacillus iheyensis HTE831 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Oceanobacillus;species:Oceanobacillus iheyensis; 8.462961684 8.600710997 8.620549788 7.676651165 8.008587453 8.260618535 8.770322605 8.080958724 8.943816316 7.864629779 7.977799234 8.235013238 187923627 MFS_antibiotic Antibiotic resistance transporter Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8.982606218 9.099157593 9.036812291 8.370513741 8.280450856 8.300579589 8.449746495 8.306017438 8.177620822 8.21559986 8.281962058 8.595358421 112982645 related_thiosulfate_gene Bioleaching Sulphur Acidithiobacillus ferrooxidans 8.708021943 8.655057314 8.773415567 8.431339176 8.231445224 8.102428408 8.172331038 7.991015853 8.447169873 7.886142893 7.899686949 8.234808875 29610214 nmoA Organic Remediation Aromatics Nitoaromatics Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 8.543263172 8.239618464 8.108402734 7.870410354 7.925774391 7.98569173 7.959740203 7.961556335 8.035822098 7.730292635 7.946767949 118034382 phn Organic Remediation Herbicides related compound Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.46374494 8.388177251 8.391895715 8.074266964 8.21451459 8.365080393 8.361375839 8.424682791 8.486268641 8.633847189 8.52016863 8.560236858 99030642 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 8.70001781 8.638090621 8.765853008 8.350106331 8.45029065 8.261236195 8.230757967 8.37417423 8.391151984 8.204439109 8.090640726 8.351276469 229747722 sigma_70 Stress Sigma factors Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 9.519128523 9.365575074 9.353729747 9.113786785 8.711963615 9.107833066 8.571640385 9.048022811 8.895460043 9.209548185 9.098268311 78035272 obgE Stress Radiation stress Xanthomonas campestris pv. vesicatoria str. 85-10 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas euvesicatoria; 8.996239907 8.997531543 8.904919148 8.897573662 8.591666473 8.240285419 8.733123761 8.906135495 9.096754817 8.804535759 8.922755011 8.509717356 56543519 pstA Stress Phosphate limitation Zymomonas mobilis subsp. mobilis ZM4 8.930221253 8.933367607 9.029944469 7.903932981 7.932437711 8.05448419 8.578141399 8.110549133 8.554443921 8.072369866 7.89248117 7.986940637 184194639 proV Stress Osmotic stress Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 9.026033138 8.858727653 8.869223493 8.460900592 8.145565239 8.694145128 8.773612428 8.509744223 8.828616641 8.527893902 8.757563777 8.732615573 77384584 Catechol Organic Remediation Aromatics Other aromatics Pseudomonas fluorescens Pf0-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.290610106 8.550893394 8.097639955 8.391496382 8.545518421 8.620852051 8.368975877 8.699687132 8.503954302 8.553132578 8.366573302 146313078 iro virulence Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 9.193208194 9.010883194 9.349475134 9.011814728 8.95407331 8.763424416 9.09394849 8.973593881 8.956861525 8.997776762 9.165422779 9.233634301 162568581 aoxB Metal Resistance Arsenic uncultured bacterium superkingdom:Bacteria; 8.987057955 8.824179415 8.558818541 9.156246668 9.074024045 9.152165603 8.819229631 9.262207121 8.791647534 9.01054202 9.065017809 8.514689149 28853408 nmoA Organic Remediation Aromatics Nitoaromatics Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 9.546262623 9.527298401 9.709375019 8.94316908 8.9841942 9.061331019 8.994859083 8.65800262 9.014947862 8.874395802 8.89289503 9.202117824 169600753 katE Stress Oxygen stress Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 9.363543911 9.44732102 9.457769882 9.424498073 9.599019252 9.459145394 9.359740149 9.944520515 9.111859359 9.602668104 9.569715335 9.441848996 157913776 pcaG Organic Remediation Aromatics Other aromatics Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 8.41567385 8.742124321 8.915466006 8.039992863 8.724960173 8.565199897 7.721128222 8.283472813 7.961154796 3659633 ureC Nitrogen Ammonification Synechococcus sp. WH 7805 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.403239657 8.117417994 7.663452931 7.665908534 7.94687601 7.806086654 7.012767416 7.255062558 7.423676824 7.440484193 2983280 ArsC Metal Resistance Arsenic Aquifex aeolicus VF5 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Aquifex;species:Aquifex aeolicus; 7.319048191 7.198598783 268310376 fnr Stress Oxygen stress Thermomonospora curvata DSM 43183 8.512232695 8.518649688 8.744650958 8.41719927 8.178441061 8.242523952 8.818259735 8.74567747 8.574470614 8.832886037 8.530270769 91782272 cymC Organic Remediation Aromatics Other aromatics Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.647824668 8.819640934 8.838998172 8.876652974 9.452194972 8.976983662 8.712430118 9.189313587 8.843988342 9.042982791 9.144157758 9.322387632 85060398 pstB Stress Phosphate limitation Sodalis glossinidius str. 'morsitans' 8.267214105 8.122574547 7.947400165 8.037333141 7.86929763 7.947175327 8.216444827 8.147026501 8.319046189 8.043275204 8.147243317 14520398 apu Carbon cycling Carbon degradation Starch Pyrococcus abyssi GE5 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Pyrococcus;species:Pyrococcus abyssi; 7.595294823 7.534413607 7.4335881 7.262160679 6.960505994 7.900555518 7.476822921 7.526171963 7.432199383 83316528 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.064775167 9.134240762 8.904739981 8.375652762 8.379686707 8.432886637 8.416993234 8.04170406 8.532148718 8.342210999 8.329708234 8.63045073 134136422 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 7.349792097 7.532486732 8.093555539 7.406277918 7.260198755 8.028118433 7.222601216 7.329455251 7.441415786 88771707 rubisco Carbon cycling Carbon fixation Thiovibrio halophilus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Thiomicrospira; 7.617051294 7.630748748 7.587808943 7.59196399 7.842565225 8.157019943 7.960542615 7.39996506 7.801974333 161387803 phn Organic Remediation Herbicides related compound Phaeobacter gallaeciensis BS107 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 8.454515546 8.81941121 8.627555389 8.5429659 8.556601341 8.887769159 8.908192238 8.973866804 9.236331647 8.951532072 8.987488034 9.109102439 212714100 ara Carbon cycling Carbon degradation Hemicellulose Bifidobacterium pseudocatenulatum DSM 20438 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium pseudocatenulatum; 9.226801502 9.076872942 9.257366644 8.6811089 8.496761678 8.459025468 7.855131463 8.369924229 8.328160092 8.350957925 8.402204998 8.730613859 121553944 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 8.75025332 8.489306621 8.377191898 8.058263115 7.895810346 7.863871345 8.008649772 7.598177785 7.694610836 7.743244802 8.035770977 212561448 clpC Stress Protein stress Anoxybacillus flavithermus WK1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Anoxybacillus;species:Anoxybacillus flavithermus; 8.3774438 8.473480238 8.299938326 8.492582296 8.377328849 8.141178003 8.456270734 8.263629284 8.213629167 8.321323419 187728303 pbrA Metal Resistance Lead Ralstonia pickettii 12J 8.461393374 8.029012793 8.140130621 8.022969824 7.649723984 7.726975117 8.043688017 7.863526302 7.730209535 7.881248376 111021484 atzA Organic Remediation Herbicides related compound Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.971915635 8.948489245 8.953492236 8.796127071 8.807302539 8.707555088 8.595683654 9.133906358 8.722737099 8.9067009 8.763516457 8.630408489 149915774 glnA Stress Nitrogen limitation Roseobacter sp. AzwK-3b 10.48371561 10.28006512 10.3529054 9.480481621 9.473152952 9.767044281 9.890087311 9.588457735 9.93099316 9.934126219 9.919511768 10.07907023 167668451 grpE Stress Heat shock Anaerotruncus colihominis DSM 17241 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Anaerotruncus;species:Anaerotruncus colihominis; 10.00813628 9.95284788 10.08863562 9.266490749 9.332999811 9.435762314 9.318923493 9.193570391 9.221230344 9.225371967 9.633933254 9.641109559 27353502 groEL Stress Heat shock Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.436148434 8.108672977 8.337864988 7.847230983 7.724691241 7.757542539 7.413541742 7.161011896 7.803470716 7.494676278 7.552044166 7.322320679 34604719 nagI Organic Remediation Aromatics Aromatic carboxylic acid Haloarcula sp. D1 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula; 9.075024154 9.03913019 9.004789902 9.029150697 8.972886309 9.333251539 9.089575446 9.183262779 9.421179151 9.639711277 9.086684115 32815764 metC Metal Resistance Mercury Delftia acidovorans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia; 8.997618029 8.979936714 8.852810636 8.637826989 8.398227025 8.789298877 8.8879614 8.156993585 8.816479622 8.595040714 8.775895708 8.407310128 83841185 pnbA Organic Remediation Aromatics Nitoaromatics Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 9.454361999 9.073752516 9.004366218 8.695797721 8.662691562 8.638553782 8.713004469 8.392486749 8.62127004 8.908750371 8.929437553 8.750448968 82617410 pstB Stress Phosphate limitation uncultured archaeon 8.51395568 8.526208949 8.660096091 8.046812394 7.95281843 7.935938217 7.848689762 7.925236637 8.166074499 8.008522441 7.775125548 8.175931864 121554310 pimF Organic Remediation Aromatics Aromatic carboxylic acid Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 8.243309455 8.161758624 8.269915131 8.230151532 8.034717225 7.846749864 7.944136608 8.366669502 8.217110108 7.99369746 7.689196847 7.91493129 98977012 silC Metal Resistance Silver Sphingopyxis alaskensis RB2256 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 8.792213575 8.711854451 8.300151342 8.355534335 8.532227141 8.557832799 8.646621988 8.412089821 8.553026304 8.394125029 8.728219667 8.23053491 151363421 katE Stress Oxygen stress Shewanella baltica OS185 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 8.670621359 8.305439545 8.101241924 7.73723278 7.927047473 8.1195996 8.272612646 8.450121356 8.310940241 8.196456293 8.188781222 145217571 chnB Organic Remediation Other Hydrocarbons Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.96239017 9.067895284 8.865561886 8.106523459 8.022285667 8.414799052 8.874668134 8.302623554 9.030072717 8.149296224 8.312117977 8.214299013 13472245 CopA Metal Resistance Copper Mesorhizobium loti MAFF303099 9.146319662 8.977445217 8.585922076 8.468123761 8.535569313 8.311496162 8.609571942 8.662536484 8.515424944 158187219 xlnD Organic Remediation Aromatics Other aromatics Burkholderia sp. NCIMB 10467 10.05166346 9.778526369 9.584839982 9.207285803 9.111052395 9.21469191 9.929868273 9.682226825 9.705501237 9.236311502 9.285915671 9.339004664 77462294 pstB Stress Phosphate limitation Rhodobacter sphaeroides 2.4.1 8.961134853 8.961203618 8.785568296 9.214749558 8.796255111 8.372448442 8.951993148 8.800015933 8.743643001 8.781390091 8.784740504 8.558400314 114764834 CopA Metal Resistance Copper Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.902589262 9.029558719 9.158715086 8.604367272 8.586898628 8.812412596 9.030064591 8.238343365 9.098671093 8.666904763 8.817276127 8.771889364 14024105 hly virulence hemolysin Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 10.26141071 9.780597076 10.07554621 9.989495657 9.676135535 9.349924359 9.806486247 9.893177025 9.798998485 9.620301752 9.633161538 9.576950186 121605619 vanA Carbon cycling Carbon degradation Others Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 9.094020031 9.018057973 9.297167587 8.681205053 8.298748908 8.372913588 8.611141116 8.378432195 8.595290472 8.542351289 8.625829317 8.764544241 113526925 CopA Metal Resistance Copper Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.744331965 9.086654241 9.095149911 8.527085666 8.714382613 8.384676447 8.765214304 8.477061517 8.625234868 8.566646906 8.81670246 149370135 pcc Carbon cycling Carbon fixation unidentified eubacterium SCB49 superkingdom:Bacteria;phylum:Bacteroidetes; 8.838113131 8.560301856 8.836699389 8.165386588 8.118327603 7.946940311 7.566007664 7.258768487 8.284866539 7.473605634 7.836741687 15807217 TerZ Metal Resistance Tellurium Deinococcus radiodurans R1 9.556189588 9.437805326 9.647374392 8.882721411 8.71412373 8.756689109 8.716149101 8.851047246 8.595932123 8.750362545 8.816844151 9.104295049 161339351 catechol_B Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 8.998116005 8.713804604 8.211829291 8.918029756 8.930607923 8.66427113 8.63130464 8.488073252 8.538530831 8.439278372 8.274713578 78060215 iro virulence Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.44694662 8.758452422 8.57464537 9.375141183 9.095980842 8.581594886 9.339305114 9.302567834 8.85127101 9.206918208 9.006354729 8.910195666 26278774 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.093840618 8.24729304 8.106307282 8.250821474 8.399613974 8.274279545 8.320093044 7.981142634 224365409 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 7.574602714 7.398479026 7.632774308 7.374012883 7.10929259 7.975446552 7.190371846 7.094242497 7.500981895 197310884 phenol_oxidase Carbon cycling Carbon degradation Lignin Pycnoporus sanguineus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Pycnoporus; 9.716375023 9.585156401 9.418932253 9.007695796 8.995270728 9.033952248 9.563560528 9.032457774 9.740297759 8.997772343 8.939521339 9.137450567 86555540 CopA Metal Resistance Copper Synechococcus sp. JA-3-3Ab superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.857463625 7.874301487 7.929178055 7.901097288 7.803781233 7.695315736 7.86083059 7.921306258 83950170 nbaC Organic Remediation Aromatics Nitoaromatics Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 8.380354138 8.533955145 8.042964109 8.575963792 8.627987782 8.337838571 8.705873968 8.268368266 8.19964984 8.534708235 150956247 rcnA Metal Resistance "Cobalt,Nickel" Klebsiella pneumoniae subsp. pneumoniae MGH 78578 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 8.12873529 7.809058383 7.767564824 7.58073785 8.038479025 7.546770332 7.800026423 8.06387309 7.849752192 7.927215296 7.614003006 83840956 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 8.533748796 8.322978755 8.531472372 8.17881317 8.096660069 7.871571484 7.727329305 8.045735275 8.076560947 8.057447352 8.091260987 7.988035304 209957260 napA Nitrogen Dissimilatory N reduction Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 7.996115588 8.242190882 7.500608235 7.831595861 8.339424984 8.448348555 7.911171328 8.659668766 7.844975227 7.807369217 8.27166646 118469199 NirB Nitrogen Assimilatory N reduction Mycobacterium smegmatis str. MC2 155 7.771917541 7.826837391 8.203912118 7.923090614 8.068968463 7.968716861 8.138436529 8.251999019 8.233097279 255335206 pstB Stress Phosphate limitation Hyphomicrobium denitrificans ATCC 51888 8.325373777 8.068662904 7.476520925 7.80470448 7.774527746 7.886981724 7.149522435 8.326204278 7.699777705 7.403847877 7.637763782 219955575 fnr Stress Oxygen stress Anaeromyxobacter dehalogenans 2CP-1 10.34797356 10.25340576 10.34734264 9.843600826 9.855255295 9.885195629 9.986194871 9.73387167 10.12741799 9.723073395 9.755226478 9.896630627 600093 napA Nitrogen Dissimilatory N reduction Paracoccus denitrificans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 9.061495729 8.925475375 8.934004838 8.961734789 9.147870605 8.963880234 8.999343344 9.488974623 8.908546891 9.224890648 9.386087959 9.445345503 119384165 TehB Metal Resistance Tellurium Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.668648644 9.019849774 8.651432307 8.707206268 8.729520356 8.661072712 8.883764004 8.938866545 8.760051131 9.16618104 8.999723538 8.828104154 222081379 nmoA Organic Remediation Aromatics Nitoaromatics Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 9.09037248 9.378071781 8.942800253 8.985170142 8.729243776 8.64103172 9.012849393 8.715404064 9.098161015 8.926806828 8.964801508 92907258 chnB Organic Remediation Other Hydrocarbons Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.820371575 8.632308264 8.812919333 8.294901795 8.147798517 8.369156312 8.716064719 8.577374185 8.443879146 8.355693258 8.417699845 254981232 obgE Stress Radiation stress Nitrosomonas sp. AL212 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 8.466140811 8.199290522 7.221980243 7.313094438 7.119288156 7.668497665 7.251452877 7.378898608 7.462160378 206591419 pilin virulence pilin Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 8.418358296 8.408715617 8.434609107 8.490732108 8.415368211 8.127372255 8.501592398 8.567489486 7.949450209 35212531 chnB Organic Remediation Other Hydrocarbons Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 8.373577437 8.349742962 8.493869111 7.752316598 7.520384105 7.715093338 7.369339373 7.371951178 7.571062055 7.242637507 7.717622047 82724314 endochitinase Carbon cycling Carbon degradation Chitin Clostridium beijerincki NCIMB 8052 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium beijerinckii; 9.308479734 9.130884973 9.291513164 8.618820454 8.537740262 8.513526041 8.341021518 8.072010395 8.549819124 8.084519886 8.229364341 8.822388902 160872572 katE Stress Oxygen stress Rickettsiella grylli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Coxiellaceae;genus:Rickettsiella; 8.324847591 8.506097047 7.59669857 7.499617638 7.35735489 7.407546942 7.091362919 239904998 dsrA Sulphur sulfite reductase Desulfovibrio magneticus RS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio magneticus; 8.300436939 7.647848339 7.730884161 8.058473105 8.15893489 7.97202648 8.007302508 7.585243698 146146892 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 8.378985772 7.673539973 7.531587834 7.753752533 7.779648897 7.874948857 7.974075376 8.116196555 18313568 ZntA Metal Resistance Zinc Pyrobaculum aerophilum str. IM2 9.959792174 9.989612656 10.07805729 9.893603444 9.725557242 9.408547023 10.03867705 9.836201265 9.492216383 9.697299906 9.770815149 9.798642356 29346088 czcC Metal Resistance "Cadmium,Cobalt,Zinc" Bacteroides thetaiotaomicron VPI-5482 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides thetaiotaomicron; 8.320320283 8.242795577 8.479213088 8.232231174 8.390269929 8.03489295 8.395107478 8.571973448 8.949189572 8.718357824 8.647230514 18654204 single_strand_annealing_protein Bacteria phage REPLICATION Lactobacillus phage LL-H order:Caudovirales;family:Siphoviridae; 8.202243188 8.549664505 8.355028288 8.655312856 8.823888053 8.50930052 8.30940919 8.928035206 8.409292821 8.696849808 8.480715449 8.640877113 261337778 hrcA Stress Heat shock Bifidobacterium gallicum DSM 20093 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 8.17195191 7.745503863 7.594024443 7.563330031 7.236648081 7.937315544 7.843337934 8.21353479 7.993118116 7.920840343 7.878521516 124362533 nifH Nitrogen Nitrogen fixation Methanocorpusculum labreanum Z superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanocorpusculaceae;genus:Methanocorpusculum;species:Methanocorpusculum labreanum; 8.307159683 8.087010194 7.808674869 7.995687899 9.562929163 8.653721161 8.682450578 8.387245485 8.135058712 8.413837028 118663878 endochitinase Carbon cycling Carbon degradation Chitin Clostridium cellulolyticum H10 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium cellulolyticum; 8.602779798 8.884303453 9.106292662 8.26598296 8.207318881 8.141501676 8.044849975 8.055753054 8.164024571 7.796078406 7.931881083 8.318455577 113529321 nagG Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 8.394682034 8.333133955 8.415523803 7.608748038 7.888062337 8.15092496 7.969176351 7.257302034 8.194873643 7.812527104 7.781556142 8.095440321 114190027 tftH Organic Remediation Aromatics Chlorinated aromatics Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 9.338848287 9.394174547 9.43827035 8.880467618 8.648503185 9.004243457 9.236555166 8.930081044 9.160616039 8.898193814 9.107497277 9.204717509 77971696 catechol_B Organic Remediation Aromatics Other aromatics Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.75186556 8.700005328 8.827560004 8.186150219 7.910371433 7.985188701 8.432605108 8.113051675 8.400387581 8.169022317 8.355835339 8.090415347 120402281 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.258027697 8.109435124 8.183390698 8.198433014 8.022461425 8.399229287 8.268720611 8.195502136 7.886306802 8.088035397 177841131 sigma_24 Stress Sigma factors Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 8.250273017 8.173009855 7.823255991 7.614433638 7.166586766 7.567049797 7.312026213 8.003203915 7.506006607 7.66295191 7.537018887 170123947 rcnA Metal Resistance "Cobalt,Nickel" Escherichia albertii TW07627 8.737241832 8.446376196 8.785158228 7.909312038 7.846196164 7.686397277 7.650173828 7.248211148 8.095132859 7.370289629 7.658208848 8.01683393 113936358 ChrA Metal Resistance Chromium Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.95157726 8.886239337 8.711977068 8.282111533 8.079702619 7.551285733 8.341348881 7.946359858 7.942168274 8.428501078 7.991282195 198261650 AceB Carbon cycling Carbon degradation others gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.120997364 7.980378723 8.074095987 7.521417913 7.603192331 7.671550207 7.420212317 7.288862347 7.837508127 7.70543327 7.826903576 7.552291153 161387253 mer Metal Resistance Mercury Phaeobacter gallaeciensis BS107 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 9.677295615 9.319404387 9.002773572 8.570701631 8.78171652 8.804186231 8.6222732 9.241000853 8.623995704 9.082162175 147829487 phn Organic Remediation Herbicides related compound Clavibacter michiganensis subsp. michiganensis NCPPB 382 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 9.072983635 9.337152789 8.721820551 8.7337883 9.282103944 9.545895311 9.824884758 9.358251381 9.426581581 9.511540942 9.277112052 9.679286832 15023816 endoglucanase Carbon cycling Carbon degradation Cellulose Clostridium acetobutylicum ATCC 824 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium acetobutylicum; 8.829073623 8.679491391 8.919843536 8.182483787 8.107266977 8.096881979 7.822034227 7.758406449 8.049786947 7.94520003 7.604272333 8.12351428 6458759 mdlB Organic Remediation Aromatics Aromatic carboxylic acid Deinococcus radiodurans R1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 8.859884469 9.176254306 8.829680699 9.162482881 9.315255979 9.186630279 9.426770198 9.508103045 9.153033705 9.393289285 9.184966289 9.263301269 221067035 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 9.145452286 8.750656104 8.764887534 8.761992437 8.637743343 8.115607448 8.577781073 8.824374619 8.592595661 8.812333897 9.023074318 8.095700087 221204231 bphD Organic Remediation Aromatics Polycyclic aromatics Burkholderia multivorans CGD2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 10.42928188 10.32300448 10.44431853 9.366997217 9.754705793 10.13153168 9.323980535 10.22193624 9.640426766 9.848227877 9.844704121 161520903 silC Metal Resistance Silver Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 8.429887119 8.460414633 8.257863594 8.001934941 7.980524923 8.155382663 8.356583668 7.693151104 8.403091071 7.972609971 7.878051103 8.065533334 126236567 nahA Organic Remediation Aromatics Polycyclic aromatics Mycobacterium sp. JLS 8.901337168 9.558895323 8.768524198 8.738092174 8.407384239 50839428 pstC Stress Phosphate limitation Propionibacterium acnes KPA171202 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 9.366077571 9.270922034 9.471920402 8.818587989 8.675768365 8.723639171 8.838767919 8.84824328 8.689468703 9.055795584 8.93565994 9.163642529 188029554 exaA Organic Remediation Chlorinated solvents Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 8.098402441 8.259160685 8.460103309 7.959992216 7.649712884 8.009095167 7.958918381 8.239938313 8.27388042 8.130998006 8.148137363 7.654486317 197121256 sigma_24 Stress Sigma factors Anaeromyxobacter sp. K superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 8.205518776 8.11950638 8.155315932 7.805729841 8.134852529 8.366052147 8.396526904 8.00669901 86140080 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.495267857 8.100271213 8.333711101 8.01253443 7.861118196 7.540744981 7.675045506 7.661763775 8.118399195 7.879244171 7.557014854 7.840010414 240102414 ahpF Stress Oxygen stress Thermococcus gammatolerans EJ3 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus gammatolerans; 7.750596412 7.889520565 7.884029479 7.537735209 8.083909697 7.799970653 7.87016083 7.863495329 7.483004543 3157562 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 8.612725016 8.832130468 8.804964273 8.177506922 8.162799471 8.36258974 8.411955387 8.03806567 8.295293353 8.498881659 8.696388568 26278704 narG Nitrogen Denitrification uncultured bacterium 8.171449965 8.388296391 8.186638441 8.145822622 8.286915844 8.52047397 8.68301082 8.858912477 8.458550098 8.65271552 8.6877951 8.685138994 85374319 nitA Organic Remediation Aromatics Other aromatics Erythrobacter litoralis HTCC2594 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 9.509747033 9.295964151 9.032312914 9.086098389 8.580038898 8.332554936 8.772120455 8.825305562 229207252 hrcA Stress Heat shock Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 8.85256322 8.744247965 8.520852141 8.530490405 8.105897674 8.173369685 8.587801282 8.064999566 8.480575032 8.458569374 8.328252156 255535256 nplT Carbon cycling Carbon degradation Starch Flavobacteriaceae bacterium 3519-10 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae; 8.637468344 8.505570203 8.635194274 7.707546889 8.148010962 8.200240201 7.860220494 7.27736222 7.793949136 7.847412374 8.047090039 33415335 ChrA Metal Resistance Chromium Rhodobacter capsulatus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 8.809349549 8.62998712 8.494687854 8.393037473 8.455565407 8.312182619 8.289632392 8.401999601 8.1655554 8.28022557 7.998186643 8.288950244 119897408 AceA Carbon cycling Carbon degradation others Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 7.759341165 7.914816043 7.987196394 7.923685886 8.272808393 8.159892802 7.60869306 8.125039894 7.88298164 198258583 sigma_24 Stress Sigma factors Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 8.548763463 8.612972768 8.285345157 7.90288333 8.214024654 8.413028774 8.439385881 7.988882062 8.372647845 8.224624825 8.106038025 8.480271466 146403104 ferredoxin_oxidoreductase Bioleaching Electron transport Acidiphilium cryptum JF-5 8.578645368 8.521997239 8.605483762 8.119588034 8.105901055 8.176622966 8.613553518 8.104913693 8.749022184 7.916926355 8.212323007 8.032883005 99035804 phn Organic Remediation Herbicides related compound Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8.421807381 8.472314929 8.443502576 8.073955634 7.894663484 7.717793686 8.210796626 8.23669994 8.526140878 8.252808496 8.289395308 8.52078071 242241394 pstA Stress Phosphate limitation Dickeya dadantii Ech703 11.14591092 11.02001468 10.99516805 10.56860524 10.51419525 10.46203333 10.48364966 10.18324623 10.84463745 10.64221723 10.74620557 10.70995644 251776881 amyA Carbon cycling Carbon degradation Starch Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.137983931 7.881078529 8.137022328 8.046956531 7.884090131 7.99432975 8.316440269 8.307522449 8.262246642 8.2739162 152985552 vanA Carbon cycling Carbon degradation Others Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 9.032698999 9.055225104 8.986587292 8.94104732 8.726038497 8.974194216 9.017798245 8.94433118 8.850916408 9.256515717 9.318529369 9.181885653 192801880 amyA Carbon cycling Carbon degradation Starch Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.336616241 8.160601134 8.353251307 7.804777807 7.852214691 7.69599604 7.374800067 7.821926337 8.03288103 7.973373734 7.886850308 7.811378515 166155705 sigma_70 Stress Sigma factors Chlamydia trachomatis L2b/UCH-1/proctitis superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Chlamydiaceae;genus:Chlamydia;species:Chlamydia trachomatis; 9.680191983 9.630680427 9.614139272 9.147803909 9.030824681 9.181480561 9.155537905 8.990889381 9.589749816 9.474088066 9.570761853 9.640547985 1255504 nifH Nitrogen Nitrogen fixation unidentified bacterium superkingdom:Bacteria; 9.499307247 9.527608389 9.681612544 8.97621673 8.957856115 8.816707893 8.960127438 9.222065063 8.950069827 9.132387383 9.237330986 9.423310889 120595409 hly virulence hemolysin Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 9.114727257 8.991965749 9.151264813 8.70549907 8.787313379 8.828920588 8.677263101 8.727708971 8.873194742 9.198810866 8.942932197 154362348 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 8.578504287 8.667633868 8.735753641 8.021721491 7.776855219 7.961471322 7.496459142 7.449090082 7.850768375 7.730335109 8.089064487 7.973511935 99083245 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.458278678 8.413577957 8.466371057 7.810263949 7.692141395 7.719733354 7.421434741 7.341815078 8.010339343 7.46864484 7.432589689 7.771331163 197720124 TerD Metal Resistance Tellurium Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 9.321393946 9.281077207 9.272333838 9.609622588 9.257882225 8.937198182 9.480520728 9.396513919 9.295212461 9.114426442 9.070755359 9.191034107 219870939 sigma_24 Stress Sigma factors Haemophilus parasuis SH0165 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus parasuis; 8.530910234 8.665102031 8.856965595 8.28257913 8.28521122 8.421028205 8.567431033 8.410828944 8.238064935 8.332956183 8.391467089 191161472 cytochrome Energy process Energy process Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.665665203 8.24263556 8.653863777 8.051866366 8.216122663 8.135833719 8.184304817 8.332801397 8.085620199 8.100744648 190696421 nmoA Organic Remediation Aromatics Nitoaromatics Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.277150371 7.923218632 8.24066322 7.957847413 8.043836298 7.773041279 7.903674182 8.063065109 8.20405713 8.137964867 8.149497906 8.166336732 146303169 pimF Organic Remediation Aromatics Aromatic carboxylic acid Metallosphaera sedula DSM 5348 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Metallosphaera;species:Metallosphaera sedula; 7.077837093 7.096611311 148264604 pstC Stress Phosphate limitation Geobacter uraniireducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 9.214454316 8.875006951 8.893846734 9.118699381 8.727418937 8.68153234 9.176201879 9.181081747 9.132579826 9.108803224 9.042177681 8.908504754 55978088 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.102534675 8.059799259 7.554564619 7.236672165 7.620735745 7.722890736 7.105559199 8.268113339 229793030 grpE Stress Heat shock Shuttleworthia satelles DSM 14600 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Shuttleworthia;species:Shuttleworthia satelles; 8.266067848 8.303843373 8.505387794 8.55403598 8.462966526 8.28812281 8.419443916 8.573480064 8.338234065 8.704470257 8.470634361 7.952443624 84704123 linC Organic Remediation Pesticides related compound Parvularcula bermudensis HTCC2503 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 8.522015888 8.749590946 8.624662734 8.557568291 8.485088255 8.055954763 8.529891633 8.372390983 8.43995289 8.192803116 8.301829114 8.163577959 29608991 CopA Metal Resistance Copper Streptomyces avermitilis MA-4680 8.723930396 8.946758251 8.969279469 9.279995066 9.204643746 8.956186478 9.353515166 9.279219097 8.843915318 9.335512184 9.196733191 8.871300076 184194861 sigma_70 Stress Sigma factors Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.360522052 8.194747274 8.321801964 8.228870158 8.227126632 7.563385838 7.961099305 7.879216163 8.046305915 7.934183913 7.990645969 118619182 linB Organic Remediation Pesticides related compound Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 9.041931044 8.990699904 9.287874566 8.883642831 8.873855022 8.467388508 8.315049253 8.293698736 8.574445857 8.966600214 8.876728654 119510025 mer Metal Resistance Mercury Nodularia spumigena CCY9414 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nodularia;species:Nodularia spumigena; 8.441255486 8.012260821 8.434618462 8.248930554 8.020766339 8.035991402 7.606900018 7.532879583 7.523910823 7.599537199 7.890631778 56312226 nagG Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 8.926007046 8.707143922 8.220723603 8.246437415 8.364790791 8.369826262 8.59973139 8.431170045 9.092396022 7.929794219 8.093109263 8.248954504 148259093 glycosyl_transferase_EPS Bioleaching EPS Acidiphilium cryptum JF-5 8.624233669 8.468569584 8.961988214 8.905533155 8.664180096 8.244056712 8.685586588 9.145025713 8.673263102 8.801945505 8.623899107 8.995884431 238798717 pstB Stress Phosphate limitation Yersinia mollaretii ATCC 43969 8.792003646 8.319370266 8.687280403 8.193666706 8.258430103 8.181151202 8.169192294 8.184744005 8.238918839 8.215519307 8.100326602 8.020205336 158337761 nifH Nitrogen Nitrogen fixation Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;genus:Acaryochloris;species:Acaryochloris marina; 8.48961057 8.329235926 8.453636701 8.294478817 7.811769279 8.158294126 8.078175735 7.703838835 7.651181761 7.992024026 7.896760219 114765661 pheA Organic Remediation Aromatics Other aromatics Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.360171077 8.695962057 7.989105786 8.050150531 8.619318412 8.808959349 8.331184867 8.648636971 8.432107379 8.654167537 8.493699619 77382107 MFS_antibiotic Antibiotic resistance transporter Pseudomonas fluorescens Pf0-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.658630191 8.821850479 8.409547206 8.331373003 8.381065722 8.563215402 8.824525415 8.688844615 8.693847315 8.580885651 8.672160457 8.618925483 60476243 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 8.494201961 8.059724534 7.77653448 7.722923866 7.71004943 7.718364127 8.214623054 8.257408571 8.115493649 7.712693247 8.211183257 254485874 pcc Carbon cycling Carbon fixation Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.274919532 8.292716869 8.283700306 7.788340716 7.802278264 8.08538725 8.311237267 7.662621263 8.545170812 7.732504872 7.682881872 7.86648399 3261632 pcc Carbon cycling Carbon fixation Mycobacterium tuberculosis H37Rv superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 8.453001307 8.470405073 8.38546057 7.664605847 7.984672582 8.369299158 8.614848449 7.720298513 8.460565476 7.966751523 8.092299573 7.74556204 224601635 pilin virulence pilin Lutiella nitroferrum 2002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Lutiella;species:Lutiella nitroferrum; 8.259949353 8.261772228 8.306177758 8.443521015 8.590114683 8.552709464 8.697563888 8.553363375 8.927137131 8.720092408 8.653683931 257456586 arsM Metal Resistance Arsenic Treponema vincentii ATCC 35580 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema vincentii; 8.040478717 8.218108228 8.53608098 7.878046169 8.181524923 8.792868927 7.111898002 8.622565591 8.295366275 8.31377369 192286126 ChrA Metal Resistance Chromium Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.131606137 8.097642923 7.93838749 7.968548168 8.07799651 8.157263848 8.126052728 8.095327444 7.890860971 148261250 related_thiosulfate_gene Bioleaching Sulphur Acidiphilium cryptum JF-5 8.540220071 8.840204715 8.704699611 8.798315552 8.804921009 8.900488107 9.160603848 9.351181373 8.917260136 9.495896315 9.484517368 9.195744311 227989634 sigma_24 Stress Sigma factors Meiothermus silvanus DSM 9946 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 9.506332061 9.556770413 8.222277092 8.499201067 8.638604879 8.468398117 9.324386194 8.62639344 8.625416014 8.772286305 70729985 nmoA Organic Remediation Aromatics Nitoaromatics Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 9.922869831 9.419178061 9.554632866 9.557399611 9.49298851 9.547394682 9.268916833 9.56983568 9.150213265 9.379577649 9.514173908 9.476061953 157911978 nasA Nitrogen Assimilatory N reduction Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 8.322519331 8.16575141 8.240554423 7.670816681 7.343146752 7.5670042 7.401444129 7.059117829 7.488382426 221179348 ArsC Metal Resistance Arsenic Burkholderia multivorans CGD2M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 8.005457912 8.027062278 7.567713142 7.378714308 7.481722496 7.084006708 7.023977768 7.572238669 7.278632384 7.494059796 118590393 vanA Carbon cycling Carbon degradation Others Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 8.619187746 8.752924524 8.87139669 8.746839398 8.475111741 8.31281705 8.652768851 8.505384417 8.397530229 8.251106537 8.328508001 112462653 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.060088247 8.887205864 8.8916935 8.302965412 8.315354482 8.290924295 8.150436766 8.592498524 8.216444147 8.543231577 8.463552327 8.632970965 66850793 ArsC Metal Resistance Arsenic Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 9.031514807 9.162051515 9.031055373 9.62221214 9.727239515 9.792662749 9.370630534 9.979763372 8.994864464 9.981218355 10.13059271 9.933090118 106882860 gyrB other category gyrB Psychromonas ingrahamii 37 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas;species:Psychromonas ingrahamii; 8.137129914 7.966275895 7.229432325 7.164291878 6.633003169 7.176846259 6.918779812 7.337175555 115281678 nitA Organic Remediation Aromatics Other aromatics Burkholderia cepacia AMMD superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 8.743690048 8.782577069 8.529127486 8.573420003 8.333285248 8.075823803 8.185792766 8.405937195 8.497131446 8.391992375 8.569050482 227999497 obgE Stress Radiation stress Brachyspira murdochii DSM 12563 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Brachyspiraceae;genus:Brachyspira;species:Brachyspira murdochii; 7.199691372 7.034611749 7.212875031 7.059123178 111061265 pheA Organic Remediation Aromatics Other aromatics Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 8.362542428 8.357033548 8.088236192 8.171885247 8.218983437 8.322899718 8.159959483 8.53645811 7.669247839 7.690825314 7.892815307 149920229 linB Organic Remediation Pesticides related compound Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 8.522628555 8.368615735 8.643953254 7.991703878 8.160688709 8.219469143 8.638121598 7.529926014 8.749244785 7.609402116 7.896032571 7.799028963 78223429 pimF Organic Remediation Aromatics Aromatic carboxylic acid Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 8.771165672 8.828034106 8.673461977 7.85063139 7.817209232 7.995345594 8.087427515 8.331300022 8.170014139 8.023826411 8.112366262 68535289 alkK Organic Remediation Others Corynebacterium jeikeium K411 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 8.108552615 8.310373386 7.68311812 8.224130433 8.30558567 8.269345477 7.905344961 8.363689927 7.971800394 8.063483282 8.120278728 221728242 nitA Organic Remediation Aromatics Other aromatics Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.601263866 8.013580952 7.982953919 7.978715451 7.990513514 7.735765163 8.229732402 8.009264347 8.308250991 8.462336536 8.223468321 148806814 tfdB Organic Remediation Aromatics Chlorinated aromatics Bradyrhizobium sp. RD5-C2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.382361969 8.431671795 8.543862325 7.799728464 7.845873852 7.835031731 7.636329713 7.800225846 7.758387 7.858096514 7.892647404 7.956247308 197713032 Catechol Organic Remediation Aromatics Other aromatics Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 8.370628977 8.445849038 8.768166285 8.459891486 8.500005774 8.57353956 8.462236872 8.912730387 8.492026057 8.861528086 8.574232013 8.899552613 119865464 pilin virulence pilin Psychromonas ingrahamii 37 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas;species:Psychromonas ingrahamii; 8.977860647 8.910012644 9.015494467 8.857306501 8.600871794 8.212950965 8.127948433 7.944238687 7.823678303 7.713046398 8.331417373 146401338 cytochrome_c Bioleaching Electron transport Acidiphilium cryptum JF-5 8.425292938 8.036361689 8.270527611 7.950223905 7.92774586 7.979939527 7.947481907 7.698997576 8.024907391 7.836341356 7.711418879 7.504276868 190889652 gyrB other category gyrB Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 10.3256692 10.17830829 10.34535334 9.50742229 9.429495929 9.387414821 9.939756045 9.851257803 9.870862107 9.92895941 10.11948464 9.779055799 149819425 gyrB other category gyrB Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 9.359341988 9.435588182 9.882719319 9.883851876 9.703147153 9.157143509 9.343829079 10.06385484 9.440752298 9.851631202 9.564292895 9.782079181 51597597 iro virulence Yersinia pseudotuberculosis IP 32953 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia pseudotuberculosis; 9.359627662 9.298831648 9.526637313 8.78976627 8.475528063 8.628039041 8.417342558 8.337958266 8.532544713 8.639197728 8.523121776 8.854542872 229865964 AceB Carbon cycling Carbon degradation others Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 8.974537788 8.46700075 8.79811717 8.85797633 8.637217824 8.334925122 8.623185936 8.783997441 8.650140309 8.630776205 8.684098578 8.253794498 118744782 nrfA Nitrogen Dissimilatory N reduction Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 8.34569255 8.262759122 7.779232898 7.233156235 7.508696464 7.584955293 7.391359512 7.956282959 7.667772385 7.447864216 7.800629251 239981946 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Streptomyces albus J1074 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces albus; 8.630647363 8.575440113 8.488586091 7.65608736 7.788213945 8.250297788 8.478399501 6.888931671 7.829382989 7.867176563 7.553625826 85668015 fnr Stress Oxygen stress Roseovarius sp. 217 8.220722256 8.093678141 8.157669551 8.102697113 7.789992916 7.851765307 8.132565298 7.700101412 7.761413162 7.923656293 7.720384963 145701682 glycosyl_transferase_EPS Bioleaching EPS Metallosphaera sedula DSM 5348 8.925461316 8.730641461 8.958115558 8.467034478 8.453493161 8.320038335 7.976190733 8.10493076 8.492502111 8.138257289 8.015428617 8.424926379 60476038 rubisco Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.458835451 8.295545974 8.57323712 8.042326036 7.881292161 8.150077029 8.420790046 8.273666656 8.284156016 8.373327218 7.933430948 115500948 gyrB other category gyrB Azomonas insignis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azomonas; 7.37034856 7.138321098 7.588943965 6.774070616 7.897211479 7.110756339 6.953717863 7.278179947 262339958 iro virulence Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.013862986 7.189315719 6.593010659 7.456422537 7.303770524 7.034820325 224950322 cda Carbon cycling Carbon degradation Starch Clostridium methylpentosum DSM 5476 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium methylpentosum; 9.869168058 9.834215085 9.800726871 9.447121301 9.61877548 9.463948025 9.456988242 9.786061765 9.618935957 9.670077436 9.535835154 9.61207748 227423437 katE Stress Oxygen stress Denitrovibrio acetiphilus DSM 12809 superkingdom:Bacteria;phylum:Deferribacteres;class:Deferribacteres;order:Deferribacterales;family:Deferribacteraceae;genus:Denitrovibrio;species:Denitrovibrio acetiphilus; 8.902207871 8.417156307 8.931903735 8.526363269 8.311747872 8.189163879 8.099195424 8.142507348 8.346795875 8.174324294 8.027825687 8.382877547 217980168 CadA Metal Resistance Cadmium Thauera sp. MZ1T 8.802416365 8.88069763 9.047492515 8.318660732 8.580536156 8.63054766 9.059371365 8.562496528 9.14437979 8.369452767 8.426802322 8.350185584 78185642 fnr Stress Oxygen stress Synechococcus sp. CC9902 8.457704862 8.543582767 8.645180684 8.010959988 8.103117014 8.077615252 8.271464613 7.804496966 7.743688616 8.550613938 46137629 nagG Organic Remediation Aromatics Aromatic carboxylic acid Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 8.621392018 9.072392252 9.081937223 8.436253023 8.299591129 8.421287188 8.321312582 8.768672308 8.303857431 8.912878474 9.009660707 8.878279136 119461313 obgE Stress Radiation stress marine gamma proteobacterium HTCC2080 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 9.419510281 9.329387233 9.529141386 9.186997409 9.13322709 8.937143853 8.962532317 9.107688798 9.416094452 9.20187218 9.135267113 218239881 ctsR Stress Protein stress Alicyclobacillus acidocaldarius LAA1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 8.480347614 8.555364838 7.984979891 7.799955718 8.583941422 8.113969806 8.329648463 8.167571116 8.090902022 164637301 phenol_oxidase Carbon cycling Carbon degradation Lignin Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 8.930304843 8.915444587 9.192593875 8.703449729 8.694245795 8.586397694 8.769399515 9.22819502 8.828324411 8.964641609 8.765940049 9.16543751 148273549 linB Organic Remediation Pesticides related compound Clavibacter michiganensis subsp. michiganensis NCPPB 382 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 7.700191332 7.445468385 7.827987049 8.284167526 7.554074929 7.834272594 7.551752033 7.360809957 261408167 SMR_antibiotics Antibiotic resistance transporter Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 9.199708967 9.100331118 9.365393941 8.479020687 8.054108805 8.08025682 8.148623716 7.771348876 7.895087987 8.321141442 7.938736026 8.249215546 238719658 phoA Stress Phosphate limitation Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 9.262035768 9.340918222 9.435204959 8.780990864 8.681223547 8.385738764 8.693205423 8.744301346 8.644746072 8.643430344 8.598928989 8.557301932 83590145 glnA Stress Nitrogen limitation Moorella thermoacetica ATCC 39073 9.398231249 9.354341145 9.515406219 8.902894233 8.492856094 8.284499948 8.482506725 8.491330722 8.446186764 8.301390167 8.768279234 218262438 atzA Organic Remediation Herbicides related compound Parabacteroides johnsonii DSM 18315 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides johnsonii; 8.631302688 8.653295714 8.555156002 7.525289436 7.496461588 7.687997907 7.450297729 6.89104234 7.490194832 7.530978179 7.34914652 7.920497037 152029394 AceA Carbon cycling Carbon degradation others Anaeromyxobacter sp. Fw109-5 8.95925651 8.939472069 8.910312261 9.441200538 9.474878739 9.332414655 9.180649222 9.027150029 9.377084834 9.33144333 9.28650088 98978099 ZntA Metal Resistance Zinc Sphingopyxis alaskensis RB2256 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 7.926017954 7.891364366 7.064411293 7.24452053 6.829378617 6.703253357 7.725869429 7.269305872 7.092584003 254818817 CDH Carbon cycling Carbon degradation Cellulose Mycobacterium intracellulare ATCC 13950 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 9.020511723 8.673349034 9.255097373 8.785625476 8.557225426 8.290548428 8.378958513 8.408741322 8.629915612 8.642440625 8.554402643 8.563332942 254383959 amyA Carbon cycling Carbon degradation Starch Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.948976138 8.470953647 9.024937498 8.263951893 8.11183873 7.919213618 7.731167085 7.790198962 7.856331221 7.6318269 7.75501614 8.331870355 206599794 helicase_P4alpha_type Bacteria phage REPLICATION Mycobacterium phage Gumball order:Caudovirales;family:Siphoviridae; 8.41779519 8.207380565 8.431181082 8.362398427 8.165135189 7.803055458 8.062757659 8.220840499 8.362253127 8.255718911 8.14040219 7.74415774 90108407 pstC Stress Phosphate limitation Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.413311484 8.44505051 8.325401159 8.648411584 8.431423882 8.359053012 8.584277585 8.531300831 8.756813344 8.554997761 8.544582143 8.529562924 158524131 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.124569868 8.34052627 7.85626962 7.413343189 7.545651318 7.272566845 7.743942138 7.797802175 7.522513675 7.35250533 7.607622347 76801638 pstB Stress Phosphate limitation Natronomonas pharaonis DSM 2160 9.416312131 8.461172378 8.680296973 8.538666699 8.049872082 8.004490583 8.176446606 8.280560796 8.245666253 8.272849629 8.092237175 7.903667875 118168977 CDH Carbon cycling Carbon degradation Cellulose Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.75120973 8.69098283 8.923685674 8.580215291 8.653673862 8.51664989 8.605973268 8.799582898 8.5961116 8.757917053 8.798157646 8.756271813 184192241 Arylest Organic Remediation Aromatics Other aromatics Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 10.33383906 10.19838989 10.03673305 9.505925601 9.183450815 9.297392878 10.01946676 9.486163719 10.01325572 9.418015858 9.462999576 9.446978538 166861070 nagG Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.647665305 8.602009118 8.662145065 8.800031522 8.56438843 8.528015575 8.830781985 8.91338828 8.590976356 8.69144249 8.590317677 81168649 obgE Stress Radiation stress Synechococcus elongatus PCC 7942 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus;species:Synechococcus elongatus; 9.994075378 9.325850997 9.584610208 9.296453251 9.25245049 9.158522721 9.263086496 9.345799369 8.81689977 9.360390474 9.286034305 9.493705404 24350718 pstC Stress Phosphate limitation Shewanella oneidensis MR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella oneidensis; 8.546542447 8.25066769 7.678193645 7.66031934 7.52957881 7.686252422 7.44771342 7.700185326 7.578363723 7.401541727 7.868995347 126730219 CopA Metal Resistance Copper Sagittula stellata E-37 9.30813791 9.251976971 9.168603356 8.513195504 8.55954085 8.591564952 8.884060652 8.817533459 8.92895463 8.803554683 8.862921777 8.932940293 260865712 sigma_70 Stress Sigma factors Ammonifex degensii KC4 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Ammonifex;species:Ammonifex degensii; 9.81916244 9.649677271 9.43658752 9.538479208 9.349729769 9.188593131 9.329739417 9.164787215 9.202158757 9.210333959 9.183235238 9.182246844 116633902 narG Nitrogen Denitrification uncultured bacterium 9.409005042 8.894434479 8.722375033 9.25707819 9.146467714 9.035700086 9.237008109 9.299184026 8.875041719 9.039949697 9.064889133 8.83945891 68562916 FTHFS Carbon cycling Acetogenesis Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 8.096564439 7.932282083 7.91818857 8.140370293 7.817147201 7.569149469 8.283049158 8.202913733 8.250574195 8.04839142 8.058939424 221165927 CadA Metal Resistance Cadmium Burkholderia multivorans CGD1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 8.297833247 8.447523827 8.586399453 8.557156738 8.584805165 8.334727066 8.637240975 8.820596899 8.390007021 8.750183226 8.517509328 8.536789208 159182200 nhh Organic Remediation Aromatics Nitoaromatics alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 9.274571792 9.370558077 9.764203058 8.6433993 8.834797121 8.787120735 8.610270014 9.801566704 8.659005942 8.597577725 8.76484353 163840650 grpE Stress Heat shock Renibacterium salmoninarum ATCC 33209 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Renibacterium;species:Renibacterium salmoninarum; 8.375093925 8.399382485 7.993319477 7.805255114 7.819990493 7.906061615 8.052172938 8.330995812 8.391285464 221157474 bphD Organic Remediation Aromatics Polycyclic aromatics Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 9.21019131 9.191381224 9.175061163 8.594590676 8.105484079 8.46829883 8.466983637 8.192329142 8.505996664 8.37992746 8.382479303 8.6052258 260630782 pstB Stress Phosphate limitation Jonquetella anthropi E3_33 E1 8.771661673 8.088536179 8.210967291 7.5921474 7.567579744 7.809518221 8.338319152 7.918457948 7.787546669 146277015 fnr Stress Oxygen stress Rhodobacter sphaeroides ATCC 17025 8.738090489 8.855066793 8.879904775 8.607253484 8.44703154 8.69953392 8.278426501 8.486076038 8.456643677 8.242574079 8.462147055 78042851 obgE Stress Radiation stress Carboxydothermus hydrogenoformans Z-2901 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Carboxydothermus;species:Carboxydothermus hydrogenoformans; 9.083113404 9.147397691 9.37154936 8.870178946 8.822845007 8.920616391 8.62755441 8.822101611 9.200970765 9.024011795 9.096827215 171089732 Al Metal Resistance Aluminum Geobacillus sp. WCH70 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.616649828 8.460886529 8.741874089 8.016162224 7.910111026 7.841585597 7.592647143 7.39744457 7.949278194 7.583753629 7.62838627 7.97529558 158331001 nitA Organic Remediation Aromatics Other aromatics Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 8.893791562 8.839754594 8.904185537 8.819500598 8.858934262 8.77756461 8.926005408 9.193664737 9.26666552 9.388016011 9.48353064 9.329512566 116610559 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 9.008521918 9.003311739 8.951965933 9.054509961 8.978068206 8.959398721 8.840706666 9.168176839 8.874729396 9.289988469 9.361373994 9.19531824 116013374 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.676657722 8.457399384 8.742627045 8.252871064 8.122866156 8.452914079 8.553148431 8.349437989 8.553650007 8.292567731 8.339710548 126355800 nmoA Organic Remediation Aromatics Nitoaromatics Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.580121851 8.318377527 8.415898153 8.655615828 8.14097328 8.120584868 7.970120994 8.600436144 7.975890603 8.336597643 7.979096568 111224243 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 8.383815549 8.499172172 8.984697302 9.077997817 8.99448763 8.551959111 8.9553224 9.404215838 8.898174195 9.423575149 9.263974726 9.538001628 84495345 nmoA Organic Remediation Aromatics Nitoaromatics Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 8.838187614 8.823110157 8.983393929 8.897305036 8.710365253 8.476509094 8.77860762 8.772957138 8.942787223 8.806275526 8.692961196 8.740516215 214033704 nplT Carbon cycling Carbon degradation Starch Thermococcus sp. AM4 8.634383238 8.373581117 8.842907093 7.867287165 7.734086414 7.891427638 7.802250771 7.799831363 7.873363591 7.617605407 7.69490011 8.107538943 37955560 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.97271085 8.081771072 7.193620835 7.287448226 7.178066189 6.843730265 6.775277031 7.499115962 7.147345316 7.016543609 7.418405822 90425301 ZntA Metal Resistance Zinc Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.725784317 8.506157914 8.348780319 8.982354885 8.920662947 8.839826936 8.375659726 9.076208762 8.396928732 8.780498675 8.906942322 9.130734895 89343583 ZntA Metal Resistance Zinc Rhodoferax ferrireducens DSM 15236 8.709303054 8.494586814 8.365480473 8.772385317 8.681286492 8.740741577 8.684918643 8.556416052 8.587725129 8.696997978 8.531364345 237866855 glnA Stress Nitrogen limitation Kingella oralis ATCC 51147 9.546496759 9.137120139 8.851270213 8.350150682 8.844950957 8.531992147 9.105315504 8.721386548 9.038037182 8.736313482 8.774238136 8.757116383 218529107 merP Metal Resistance Mercury Methylobacterium chloromethanicum CM4 8.79358995 9.114566045 8.792785495 8.311020237 8.674302459 8.949534872 9.278867156 8.967823291 9.174040516 9.10309603 9.033328803 9.080863472 10174981 Al Metal Resistance Aluminum Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 8.786017384 8.522656 8.771408741 8.104777515 8.026047446 7.908550568 8.19497843 8.009536723 7.935434355 8.286292557 8.280626643 8.43426829 148499659 vanA Carbon cycling Carbon degradation Others Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.895253311 8.547706917 8.449417068 9.619020252 9.519216621 9.222040254 9.531431314 9.385225343 9.125920206 9.296345126 9.218792178 9.282053578 256584889 AceB Carbon cycling Carbon degradation others Saccharomonospora viridis DSM 43017 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora viridis; 8.803917102 8.643160895 8.496904376 8.497813594 8.666120479 8.588183052 8.817878734 8.474405837 8.558998437 8.548651802 8.805061323 8.46587818 118758099 pcaG Organic Remediation Aromatics Other aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.577047747 8.669109259 8.297626869 8.221064615 7.76250908 8.622111316 8.877083148 8.237420244 8.602346128 8.205126285 8.048764751 8.23194316 85723038 amyA Carbon cycling Carbon degradation Starch Syntrophus aciditrophicus SB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Syntrophus;species:Syntrophus aciditrophicus; 8.325364201 7.980297821 8.189103829 7.795018964 7.659745704 7.562710546 7.680497878 7.886068224 7.971333857 8.10515658 7.658807556 7.810703535 145219963 dnaK Stress Heat shock Prosthecochloris vibrioformis DSM 265 7.297785004 6.937473604 6.971773496 7.348345919 117926238 oxyR Stress Oxygen stress Magnetococcus sp. MC-1 superkingdom:Bacteria;phylum:Proteobacteria;genus:Magnetococcus; 8.940537542 8.932747972 9.079678868 8.307969855 7.630465682 8.269598629 8.047011399 7.830617263 8.03013348 8.003891465 8.295419477 118728536 CopA Metal Resistance Copper Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.494726989 8.536158625 7.864651359 8.393391802 8.312577885 8.223492026 8.304840877 8.547624786 7.991986586 7.928671436 7.982577136 91693426 MFS_antibiotic Antibiotic resistance transporter Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 9.047684222 9.158738138 8.850454774 8.07379441 8.491860322 8.703223501 9.063487162 7.994102529 8.290826998 8.06138633 8.472090943 21223890 pcc Carbon cycling Carbon fixation Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 9.937205214 9.327706303 9.308123366 8.254586347 8.216588818 8.161907536 8.807510737 7.848065601 9.041722004 8.787469739 8.687944253 145557608 exaA Organic Remediation Chlorinated solvents Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 8.434293008 8.584210847 8.637025406 8.479502153 8.440187967 8.194913724 8.246793986 8.444058726 8.565823922 8.278163777 8.242383704 8.33677606 189460734 pcc Carbon cycling Carbon fixation Bacteroides coprocola DSM 17136 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides coprocola; 8.269502631 8.322182544 8.468158538 7.843847362 7.530966031 7.72999623 7.515765052 7.326514492 7.831920603 7.491863384 7.464216661 7.641230785 160896364 proO Organic Remediation Aromatics Other aromatics Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.497951749 8.654474389 8.571970238 7.805637768 8.100045908 8.770925364 8.928791682 8.520757491 8.691190558 8.847582051 8.983504939 9.113158466 260937486 pilin virulence pilin Vibrio orientalis CIP 102891 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 8.324541269 8.425392564 8.518086635 8.128470786 8.068568926 7.985455356 8.178710902 8.335061413 8.28880355 8.364448854 8.352503565 8.401320052 221563185 sigma_32 Stress Sigma factors Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 9.239765014 9.191305476 9.416166227 8.497541348 8.383149602 8.431404107 8.175955525 8.377568879 8.373227609 8.027197258 8.21681951 8.519491041 240247506 nirS Nitrogen Denitrification uncultured bacterium 8.380308869 8.345476104 8.115400365 8.1081261 7.685383679 7.983031378 8.320483981 8.056080638 8.039867135 7.858446528 7.816527377 8.020358334 228572122 amyA Carbon cycling Carbon degradation Starch Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 10.13053195 10.18718491 10.13784131 9.284711829 9.293844491 9.746673773 9.339733676 9.156316625 9.474803952 9.508805184 9.517212347 9.849698487 268316636 sigma_24 Stress Sigma factors Rhodothermus marinus DSM 4252 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 8.005418424 7.978574125 7.926001512 8.360782186 7.90073702 8.130964046 8.108640187 8.158057264 8.239991959 7.856695206 7.889690908 256363546 Tet Antibiotic resistance other Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 9.36892154 8.49433105 8.526237657 8.826315652 8.974435738 8.610674215 9.045270667 8.779232202 8.716533809 8.861931617 8.99270373 8.64826044 226090963 pstC Stress Phosphate limitation Gemmatimonas aurantiaca T-27 superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 8.218468215 8.418454793 7.693374729 7.38530086 7.9536723 8.284077067 7.77422611 8.19330055 7.474324426 7.81937079 7.633154138 124495513 AceA Carbon cycling Carbon degradation others Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 8.07462172 8.166317743 7.890765175 8.021866571 8.070698096 8.016267263 8.439235644 8.389213579 8.370903703 8.46128691 214029983 alkK Organic Remediation Others Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8.998947898 8.926339665 8.903089721 8.350901315 8.43653118 8.712440962 8.850444077 8.77108681 8.698991974 8.88076229 8.676551392 8.926291836 206567012 rcnA Metal Resistance "Cobalt,Nickel" Klebsiella pneumoniae 342 8.373641213 8.36975174 7.856617676 8.031952465 8.43848231 8.420592414 8.07292921 8.35312141 7.812141341 8.215165414 8.147384439 56068709 pbrA Metal Resistance Lead Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 9.509474844 9.32436908 9.527863107 8.760453599 8.487227417 8.787362421 8.86002734 8.652660603 8.609101837 8.684136244 8.762150057 9.084726625 213971011 nmoA Organic Remediation Aromatics Nitoaromatics Pseudomonas syringae pv. tomato T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 8.431109841 8.41300323 8.349141445 8.866550725 8.675093632 8.408092814 8.340898726 8.649219101 8.665764278 8.639558328 8.632593535 8.415009702 237654183 iro virulence Thauera sp. MZ1T superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 9.725413881 9.678561196 9.829162382 9.125117558 9.067260642 8.854059836 8.818341269 8.899429669 9.027683262 8.953227975 9.262977178 260648368 B_lactamase_C Antibiotic resistance Beta-lactamases Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 9.030504039 9.277134954 9.526420834 9.086797362 9.012074763 9.156024673 9.60987287 9.182602545 9.475346668 9.125973938 9.175945855 9.20497836 87200293 pstB Stress Phosphate limitation Novosphingobium aromaticivorans DSM 12444 8.159948488 8.162269449 8.114380491 7.690118141 7.926354917 8.05240036 8.051754377 8.147746583 7.860392373 7.722051749 7.882070082 229468283 SMR_antibiotics Antibiotic resistance transporter Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 8.588347072 8.536874379 8.610004901 8.086760302 8.133371797 8.027549296 7.756276057 7.714629589 7.925329503 7.96417418 8.093248395 84509725 fnr Stress Oxygen stress Loktanella vestfoldensis SKA53 9.635579617 9.901150577 9.03309623 9.567257633 8.98583179 9.501968859 10.10788159 9.645695964 9.570342843 9.327986339 9.528866894 9.351652263 214029390 CopA Metal Resistance Copper Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8.940449654 8.592075009 8.665172247 8.678151825 8.223100642 8.153528285 8.296243727 8.740023184 256824560 pstC Stress Phosphate limitation Kytococcus sedentarius DSM 20547 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermacoccaceae;genus:Kytococcus;species:Kytococcus sedentarius; 8.490032522 8.488055259 8.670189729 8.28922321 8.057235649 7.958289849 8.350614881 8.286640084 8.39985759 7.894754302 7.993910976 8.0835557 254266621 sox Sulphur Sulphur oxidation Methylobacterium extorquens DM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 9.392032153 9.422921541 9.049497719 8.803097065 8.817359234 9.378474485 8.768546819 9.002945961 8.582081108 8.627966978 8.501883031 223691003 hydrogenase Energy process Energy process Desulfobacterium autotrophicum HRM2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium;species:Desulfobacterium autotrophicum; 9.117000866 9.19348955 9.256717122 8.383032387 8.491359847 8.602767655 9.24615142 8.634728153 9.248619866 8.575224163 8.699085414 8.723164829 119391523 narG Nitrogen Denitrification uncultured bacterium 9.030513501 9.059252884 8.787314001 8.123702554 8.478185818 8.547003415 8.784895844 8.738830822 8.902780579 8.616946784 8.781627837 8.460498254 34397715 grpE Stress Heat shock Porphyromonas gingivalis W83 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas;species:Porphyromonas gingivalis; 8.770087166 8.693687941 8.592546439 8.722435417 8.715958537 8.56866395 8.686056555 9.135685751 8.401984713 8.805243464 8.333552637 8.87653166 196231405 clpC Stress Protein stress Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 8.952808889 8.655645803 9.013713603 8.311462252 8.400910545 8.401073393 8.457491447 7.834709469 8.296157663 8.105063011 8.09713097 8.360281888 46371035 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.790821275 9.088174687 8.590937903 8.71013143 8.631999006 8.993260366 9.079749038 8.696047326 9.049111111 8.98960616 8.44314729 18892453 amyA Carbon cycling Carbon degradation Starch Pyrococcus furiosus DSM 3638 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Pyrococcus;species:Pyrococcus furiosus; 9.253837222 8.936362281 8.367561714 7.705210871 7.587557875 7.961478955 8.571055569 7.87230657 7.663774897 7.984319097 7.790343871 91202266 dsrA Sulphur sulfite reductase Candidatus Kuenenia stuttgartiensis superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;genus:Candidatus Kuenenia; 9.234326149 8.970727795 9.138870697 8.731972841 8.534751355 8.62067391 8.451431848 8.493168722 8.425167188 8.478447068 8.245524637 8.624506332 114337322 type_III_secretion virulence secretion Syntrophomonas wolfei subsp. wolfei str. Goettingen superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Syntrophomonadaceae;genus:Syntrophomonas;species:Syntrophomonas wolfei; 7.975361176 7.91089338 7.28722574 7.368046983 7.03484491 218463052 nagL Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium etli Kim 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.545729397 8.850085618 8.857693584 8.150551059 8.30698037 8.25855816 8.465597259 8.600502954 8.401627102 8.527384555 8.291226887 8.271551904 117608638 pstS Stress Phosphate limitation Magnetococcus sp. MC-1 superkingdom:Bacteria;phylum:Proteobacteria;genus:Magnetococcus; 8.874171964 8.69532335 8.927896166 8.218747157 8.30977763 8.214540472 8.245742518 8.290525864 8.376212258 8.402281625 8.124282031 8.30981249 188021233 SMR_antibiotics Antibiotic resistance transporter Providencia stuartii ATCC 25827 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia stuartii; 10.43048638 10.27763616 10.23664607 9.08257244 9.449919642 9.651150697 10.23134913 9.108412705 10.3957393 9.373980031 9.400814171 9.141579675 67903158 tftH Organic Remediation Aromatics Chlorinated aromatics Aspergillus nidulans FGSC A4 7.533659707 7.452717937 7.841682832 7.403047233 7.549978621 7.991641786 7.583771802 7.719816647 7.868438613 227235548 fnr Stress Oxygen stress Anaerococcus lactolyticus ATCC 51172 8.052362586 8.014033538 7.031368968 7.446787093 6.955674953 6.935835377 7.545998924 73541277 Catechol Organic Remediation Aromatics Other aromatics Ralstonia eutropha JMP134 8.661258746 8.497388779 8.476467342 8.109391722 7.974114293 8.341003745 8.460816177 8.070765484 8.303531068 8.231817688 8.369622684 8.038417819 262081855 sigma_24 Stress Sigma factors Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Haliangiaceae;genus:Haliangium;species:Haliangium ochraceum; 9.562302617 9.498481613 9.75603876 9.07233148 9.188151437 8.931582211 9.080214074 9.222258017 9.241575237 9.372338901 9.538521734 9.568684647 119372733 CopA Metal Resistance Copper Paracoccus denitrificans PD1222 9.077562557 9.058289754 8.944491263 8.876126912 8.76052706 8.981601461 9.069311991 9.099927802 9.025334675 9.008374242 9.142336083 8.904595596 4835332 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 7.774710396 7.942104351 7.767506668 7.860749908 8.113457693 7.917337291 7.78078884 7.802783497 8.005954242 51855540 dmsA Organic Remediation Others Symbiobacterium thermophilum IAM 14863 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVIII. Incertae Sedis;genus:Symbiobacterium;species:Symbiobacterium thermophilum; 8.911539102 8.856516383 8.651446741 7.849249645 8.233692952 8.245359869 7.923623766 8.053515867 8.120440107 8.35233294 8.536329167 8.131569145 159172612 CopA Metal Resistance Copper Vibrio campbellii AND4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 9.175449414 8.94590924 9.318334901 9.22130438 9.123518999 9.285098843 8.786532108 9.668835166 8.874010239 9.483051764 9.145277757 9.281384823 118134805 Al Metal Resistance Aluminum Clostridium novyi NT superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium novyi; 8.512883136 8.428376503 8.577165769 7.713230474 7.831787629 7.7800365 7.738031341 7.536487235 7.626253167 7.498177128 8.052340576 212694415 pcc Carbon cycling Carbon fixation Bacteroides dorei DSM 17855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides dorei; 8.366093517 8.131715934 8.11206604 8.209269254 8.161509317 7.906771677 7.598869606 7.994567975 7.771534743 7.65993048 213969341 CopA Metal Resistance Copper Pseudomonas syringae pv. tomato T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 8.61676383 8.278153446 8.29017983 8.395176859 8.985079906 8.253886257 8.57303619 8.755128546 8.579259045 198260589 clpC Stress Protein stress Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 8.245352885 8.256209053 8.011915391 7.962102516 8.13908485 7.96188584 8.040646939 7.938957393 8.140723254 7.740778283 113526026 Catechol Organic Remediation Aromatics Other aromatics Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.807461288 8.882152789 8.620460519 8.568828186 8.259891673 8.525337879 8.983813397 8.414326082 8.390944837 8.565397161 8.519147513 8.379629495 209517264 proV Stress Osmotic stress Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.368634059 8.144695065 8.504477522 8.26650034 8.236527096 8.074116 7.583407955 8.312200587 8.106895411 8.146893884 8.033003296 8.242452609 83367694 nmoA Organic Remediation Aromatics Nitoaromatics Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 8.510700105 8.031003395 8.31452936 8.470778055 8.219134292 7.731256938 8.498124901 8.090071402 8.153768386 8.064005083 8.20676761 21106445 pcaG Organic Remediation Aromatics Other aromatics Xanthomonas axonopodis pv. citri str. 306 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas axonopodis; 8.636992174 8.64249945 8.770864799 8.451028468 8.13190627 8.574349777 8.524650615 8.509813636 8.50105495 8.344400358 8.439905663 152964840 pstB Stress Phosphate limitation Kineococcus radiotolerans SRS30216 9.193256395 9.086493665 9.186778805 8.692838101 8.551071626 8.35504104 8.528704998 8.601735923 8.537298573 8.605503066 8.30464318 8.759085244 152982889 SMR_antibiotics Antibiotic resistance transporter Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 9.816153495 9.649030431 9.448763335 9.670223237 9.342908885 9.251303612 9.420287692 9.263239198 9.187365781 9.367946961 9.199873948 9.330656848 147677841 NiR Nitrogen Assimilatory N reduction Pelotomaculum thermopropionicum SI superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Pelotomaculum;species:Pelotomaculum thermopropionicum; 7.734730326 7.662013277 7.660232591 7.34469687 7.847768023 7.627437328 7.568607955 7.455109131 178468097 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces griseus subsp. griseus NBRC 13350 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 9.256573785 8.979200562 8.923399957 8.813024467 8.713569063 8.683739319 8.931221691 8.667691563 9.141320791 8.48732726 8.507756008 8.609653483 51243146 phtA Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas sp. tfd44 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 10.18224613 9.956934597 10.12210314 9.525245363 9.446821092 9.185002428 9.626484044 9.181278619 9.733034379 9.38629886 9.48138118 9.39017608 119714903 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.629645968 8.424840628 8.497914065 8.503124568 8.510603919 8.347725317 8.156408298 8.666769402 8.289107316 8.47033671 8.52157429 8.445832992 257796609 dsrA Sulphur sulfite reductase Desulfohalobium retbaense DSM 5692 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium;species:Desulfohalobium retbaense; 8.627435077 8.588661892 8.619068262 8.764932544 8.543043935 8.352156974 8.672440619 8.619332327 8.412714637 8.573617412 8.604356651 8.383609793 170690770 bphA Organic Remediation Aromatics Polycyclic aromatics Burkholderia graminis C4D1M 8.363822632 8.447197798 8.00478116 7.847793869 8.224064761 8.671768634 8.562641088 8.543029132 8.582609826 8.349302032 8.547686515 8.106361163 47716866 AprA Sulphur adenylylsulfate reductase uncultured bacterium superkingdom:Bacteria; 8.353679857 8.191516656 7.953977509 8.019065102 8.015403959 7.959191265 8.022237415 8.373399164 7.517480433 120404199 ArsC Metal Resistance Arsenic Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 7.988736346 8.20010645 8.068443366 7.681019719 7.405422252 8.236633735 7.968035384 8.207444133 56798757 catechol_B Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 8.769179335 8.924945228 8.190129133 8.195067052 8.377958071 8.971372155 8.325562123 8.981041377 8.254768293 8.234626687 8.15342177 93453364 obgE Stress Radiation stress delta proteobacterium MLMS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 9.008492927 8.999977717 8.890950117 8.409362429 8.548885026 8.550050476 8.323426011 8.628957036 8.458232207 8.634040125 8.747362889 8.707407125 149749594 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Vibrio parahaemolyticus AQ3810 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 8.847542742 8.831829619 8.803750996 7.868753866 8.33169738 8.465226862 8.781007799 8.137705486 8.871200412 8.165153507 8.168867661 8.425831891 960298 endochitinase Carbon cycling Carbon degradation Chitin Aeromonas sp. 10S-24 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas; 8.146599035 8.033121641 8.364853178 8.232294864 7.85510126 7.991385356 7.984871456 8.185883924 7.903934787 7.798423251 7.56783907 177843470 CadA Metal Resistance Cadmium Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 8.92718671 9.112471925 9.081266356 8.482715314 8.671353216 8.772508382 9.128916039 8.507727975 9.064917344 8.509134733 8.708614617 8.56911235 119189427 endochitinase Carbon cycling Carbon degradation Chitin Coccidioides immitis RS superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides immitis; 8.19953488 8.641109596 8.735654184 8.392264036 8.183848105 7.958705033 8.042390643 8.727558623 8.361371458 8.148259472 8.003858003 8.285409181 158433103 obgE Stress Radiation stress Eubacterium dolichum DSM 3991 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichi;order:Erysipelotrichales;family:Erysipelotrichaceae;species:Eubacterium dolichum; 8.123938278 8.043385681 8.344955828 7.302009662 7.041532033 7.589289835 6.959866913 6.814328957 7.060131059 7.326386757 77962931 cda Carbon cycling Carbon degradation Starch Yersinia mollaretii ATCC 43969 8.698658888 8.521257315 8.841899982 8.187041369 8.121220488 7.951764858 8.030466078 8.104758942 8.104503756 8.169345434 8.16388472 8.148579239 120401795 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.212398542 8.057373065 8.243904805 8.439563273 8.563508831 8.623328523 8.115185643 8.527916598 8.276149986 8.431318344 8.641351596 8.232204468 23429032 B_lactamase Antibiotic resistance Beta-lactamases Aeromonas schubertii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas; 8.653379836 8.941290864 8.741801614 7.917403243 9.126047153 9.087057357 9.145311611 8.902927115 8.919975875 9.067580167 9.055759918 222150080 Arylest Organic Remediation Aromatics Other aromatics Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 8.218042337 8.369368014 8.281447245 8.102906292 7.546790882 7.676735723 7.8119611 8.036033971 8.141185581 7.744703306 7.695861834 7.729464138 209871955 obgE Stress Radiation stress Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 8.38821766 8.223959289 8.303395019 8.726484662 8.548477131 8.539628462 8.412362636 8.754383623 8.590527805 8.562115103 8.477180319 8.233469309 160878387 sigma_24 Stress Sigma factors Clostridium phytofermentans ISDg superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium phytofermentans; 8.827158597 9.050551013 9.189705304 8.613353354 8.475772606 8.51542747 7.996660795 8.099327201 8.06033445 8.225617283 8.466283926 8.743531814 219680251 rd Organic Remediation Chlorinated solvents gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.869830816 8.557086793 8.825519654 8.122102345 7.768773533 7.738308635 8.014990772 7.756409124 7.647856492 7.640854235 7.943041343 218230534 atzA Organic Remediation Herbicides related compound Roseburia intestinalis L1-82 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia intestinalis; 9.619989765 9.647192176 9.576829517 9.125199223 8.525938581 9.069823147 9.075564419 8.787088201 8.979527458 8.775346915 8.945593048 9.065344839 1322079 phenol_oxidase Carbon cycling Carbon degradation Lignin Trametes villosa superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 8.96158048 9.047335296 8.80924237 7.937769406 8.518434239 8.749057887 9.202933403 8.636429678 9.47112224 8.508863257 8.45691625 8.91003735 150838841 proO Organic Remediation Aromatics Other aromatics Marinomonas sp. MWYL1 9.547393346 9.461769819 9.773898947 9.088255023 8.917608549 9.000026957 8.932212073 8.913276735 8.846439811 8.847095592 8.792364288 9.179363421 21219500 AceB Carbon cycling Carbon degradation others Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.532793114 8.46256488 8.644476373 9.173313706 9.098556365 9.093815469 8.676565695 9.407105395 8.489497086 9.280344847 9.332267565 8.627525536 269103309 pstS Stress Phosphate limitation Photobacterium damselae subsp. damselae CIP 102761 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium damselae; 8.156908015 8.204096274 8.724559729 7.791344023 7.245558837 7.507347961 7.396508648 7.540268116 7.754499042 78224522 hydrogenase Energy process Energy process Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 9.269334362 8.81135797 9.085971712 9.263942355 9.027030901 8.640757298 9.143929031 8.878930203 8.965270674 8.77496764 8.651381061 8.604816296 261200541 endochitinase Carbon cycling Carbon degradation Chitin Ajellomyces dermatitidis SLH14081 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 9.337302185 9.231419759 9.475834265 8.407886124 8.054499426 7.957197456 7.925653936 7.875591614 7.851162307 8.308330272 8.089407582 8.463408119 51291749 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.704060618 8.377792095 8.548406314 7.878154283 7.873007363 7.857731894 7.60104355 7.845712457 8.14550995 7.895863817 7.787076263 8.043758692 46917316 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.202491966 8.186712087 8.503265315 7.433164394 7.527533234 7.606643376 7.635041773 7.15006079 7.54535531 7.183092829 7.855294915 254254433 endochitinase Carbon cycling Carbon degradation Chitin Burkholderia dolosa AUO158 9.249082389 9.456234621 9.565338811 8.718736766 8.413568437 8.665378614 8.808078009 8.453657139 8.616286939 8.604503452 8.629984785 8.89042258 124267665 CopA Metal Resistance Copper Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 8.379702087 8.21766161 8.185315551 8.359676585 8.710882917 8.178257273 8.739904593 7.967749018 8.438273635 8.695772087 8.28382904 85697564 nagG Organic Remediation Aromatics Aromatic carboxylic acid Nitrobacter sp. Nb-311A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter; 9.005994749 9.0439117 9.476276982 9.23252045 9.09141293 8.903797556 9.174447329 9.293630047 9.331078663 9.252154874 8.966284563 39650635 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.700103323 8.562331867 8.286235094 8.507926943 8.675552835 8.649698961 8.8813267 8.3389029 8.581864485 8.912415925 8.424175927 116750363 fnr Stress Oxygen stress Syntrophobacter fumaroxidans MPOB 9.433017109 9.422183802 9.267589069 8.685322921 8.697853153 8.566377297 8.659608883 8.59805031 8.566971317 8.707398226 8.473634972 8.90809404 254446642 ara Carbon cycling Carbon degradation Hemicellulose Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 9.030924537 9.154585355 8.897084876 8.350949423 8.369962318 8.384862466 8.235365316 8.423448323 8.427064934 8.44836911 8.353680907 8.612273447 148498935 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 9.506220461 9.628923699 9.786633604 9.043363022 8.899544414 8.890970968 9.154261671 9.292517507 9.07735389 9.302774609 9.141084409 9.35269739 113941581 amyA Carbon cycling Carbon degradation Starch Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 8.257137165 8.260270765 8.265563989 7.846012232 7.562024089 8.243810821 8.166474649 7.555025674 7.641195494 7.877599823 7.511825007 46307942 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.44874909 8.410322666 8.772412658 7.422257862 7.670863961 7.388989591 7.086716617 7.767235473 256817948 vdh Carbon cycling Carbon degradation Others Streptomyces griseoflavus Tu4000 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoflavus; 8.6639554 8.260978129 7.841215044 7.732972773 8.363450594 7.277906606 8.395872829 7.391159396 7.513569495 7.964758294 218887572 pstB Stress Phosphate limitation Desulfovibrio vulgaris str. 'Miyazaki F' 9.654058309 9.380575613 9.616991505 8.782018743 8.55888565 8.951881339 8.867069715 8.470844232 9.088894066 8.913240951 8.913871704 8.981838266 145205965 pstB Stress Phosphate limitation Chlorobium phaeovibrioides DSM 265 9.706393497 8.862025846 9.211451203 8.796106633 8.813224871 8.759555769 8.526350095 8.830176061 8.514869036 8.551104008 88798833 amyA Carbon cycling Carbon degradation Starch Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 8.577397206 8.861729067 8.475934477 7.953622035 7.737253785 8.773695714 8.822801857 8.506841427 8.833616769 8.410064588 8.66951833 8.523779244 91692218 iro virulence Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.45975572 8.09833175 8.14856347 8.218864225 8.147842866 7.904995978 8.092360313 8.101260105 8.15247352 8.144027354 7.937586531 7.821232779 24375154 pilin virulence pilin Shewanella oneidensis MR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella oneidensis; 8.71272111 8.531233916 9.032771163 8.427199393 8.353742975 8.30711507 8.308588477 8.188599794 9.024449084 8.437076475 8.452961297 8.714057152 151938860 AceB Carbon cycling Carbon degradation others Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.831204214 8.708450593 8.619731125 8.60543513 8.368279918 8.146410662 8.385849079 8.297836592 8.761614568 8.380596942 8.459187412 8.461263596 187477720 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 7.426384526 7.014075299 7.009586287 6.731602856 6.741384802 7.409365494 7.022105284 6.893312974 7.122129032 254382506 sigma_24 Stress Sigma factors Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.865459582 8.690238655 8.837436308 8.517933268 8.309492289 8.248358543 8.296220902 8.487267196 8.391416406 8.333739025 8.388837299 8.521840596 123989740 sigma_24 Stress Sigma factors Microscilla marina ATCC 23134 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Microscilla;species:Microscilla marina; 7.169917723 7.28866604 119451175 nifH Nitrogen Nitrogen fixation marine gamma proteobacterium HTCC2143 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.667956241 8.664583244 8.789326893 7.882277366 7.735192628 7.905665491 7.464717998 7.296078147 7.984565443 8.050559318 8.071257524 8.017690889 255280108 srt virulence surface protein Bryantella formatexigens DSM 14469 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;species:Bryantella formatexigens; 8.21338868 8.778011913 8.506680783 8.566455398 8.403586868 8.281596796 8.232615458 8.548314331 8.634603917 8.451346405 8.226550572 110835607 Mex Antibiotic resistance transporter Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 8.548579843 8.642153664 8.77073676 7.77517094 7.617932453 7.683015565 7.118647189 7.84017424 7.271007174 7.641669453 109947647 ppk Phosphorus Phosphorus utilization Helicobacter acinonychis str. Sheeba superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter acinonychis; 8.936268024 9.036625314 8.835049885 8.277513412 7.806240612 8.410534765 7.820182927 7.641014475 8.029442935 8.042985632 8.410165407 116098892 katE Stress Oxygen stress Lactobacillus brevis ATCC 367 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus brevis; 7.877482833 8.14704646 8.36975591 7.927565288 8.148517922 8.420078837 8.643665266 118424304 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.521497127 8.408719895 9.018981763 8.663215762 8.507554376 8.195374499 8.600961289 8.997945203 8.676034965 8.75678132 8.774002345 8.954512754 209503414 ChrA Metal Resistance Chromium Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.224971964 8.265003192 8.232712355 8.335215586 8.196825534 8.499868525 8.626696203 8.676722251 8.603338892 8.608864075 8.360240206 157405420 CopA Metal Resistance Copper Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 8.066327838 8.627243051 7.69286415 8.099289063 8.331841395 8.643053102 8.103567587 7.928301435 7.77013747 7.905439037 7.662033521 254378375 fnr Stress Oxygen stress Streptomyces sp. SPB74 8.774778833 8.839343429 8.721981899 8.568991022 8.556500615 8.454297394 8.525185007 8.99662434 8.61820724 8.875029103 8.677438077 8.682436489 54302907 TehB Metal Resistance Tellurium Photobacterium profundum SS9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 8.150126974 8.059169197 8.353455387 7.667836265 7.568514363 7.485149049 7.090090722 7.169882578 7.351177914 7.4074456 254388596 pstA Stress Phosphate limitation Streptomyces clavuligerus ATCC 27064 10.80194602 10.52558966 10.75329972 10.06247563 10.22206297 9.824528936 10.17155767 10.02823661 10.51757689 10.35246932 10.3161891 10.07682445 227504476 obgE Stress Radiation stress Corynebacterium striatum ATCC 6940 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium striatum; 9.650762429 9.617931492 9.454206402 8.750710416 8.860773348 8.923544054 9.191843722 8.636481957 9.417913271 9.033699179 9.25449119 8.971451612 206677026 bphA Organic Remediation Aromatics Polycyclic aromatics Rhodobacterales bacterium HTCC2083 9.432966548 9.196857748 8.939460111 9.066337423 8.744812513 8.702216888 226188355 katE Stress Oxygen stress Rhodococcus erythropolis PR4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 8.922591266 8.842188721 8.67951879 8.993881164 8.903761269 8.665201769 9.025299105 8.986128408 8.737982524 8.830035722 8.683998762 8.672269795 84704987 mer Metal Resistance Mercury Parvularcula bermudensis HTCC2503 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 8.648669617 8.754122122 8.929743615 8.246900133 7.948894017 8.089922409 8.226537602 7.774232906 8.369270764 8.118253097 8.18152983 8.177143231 113868565 SMR_antibiotics Antibiotic resistance transporter Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.422875134 8.137569999 8.075687951 8.212717929 8.06041001 7.861336444 8.137992541 7.971446706 8.318528548 7.952858833 7.899893246 7.840721658 114705368 B_lactamase_A Antibiotic resistance Beta-lactamases Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 8.424444368 8.253494993 8.644287483 8.045637743 8.065978868 7.930407799 7.95262188 7.845034821 8.346471186 7.89808795 7.759839923 8.223313298 240103262 pstB Stress Phosphate limitation Thermococcus gammatolerans EJ3 8.584442237 8.359346529 8.865218272 8.008750745 7.866227415 7.790061452 7.290057598 8.123936577 7.47182647 7.496684056 7.874642177 62149262 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.184967509 8.055695585 8.202213 7.535944649 7.458066948 7.449162199 7.160073082 7.075094191 7.827583174 7.346207958 7.296796422 7.493554781 133738662 CopA Metal Resistance Copper Herminiimonas arsenicoxydans 7.89075106 8.173036711 7.971927192 8.105555042 8.080579381 7.97435772 7.839531637 7.969509295 8.100711615 8.124068807 7.69593772 8.016106496 110287061 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 8.676018014 8.555813472 8.710468687 8.671633087 8.032970919 8.056333909 7.613855164 7.997660028 8.161983742 8.065012894 8.524234714 148258602 merP Metal Resistance Mercury Bradyrhizobium sp. BTAi1 8.634986977 8.576363967 8.745294726 8.364047123 8.086785291 8.616128057 8.89245155 8.656583119 8.753306926 8.846055087 8.87129243 9.065718624 157804777 APS_AprB Sulphur adenylylsulfate reductase Thiobacillus denitrificans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 8.673907412 8.531094002 8.722633675 8.20267873 8.077742708 7.967976299 7.978174346 8.201022232 8.008952981 7.768665877 8.322783951 116222549 pcaG Organic Remediation Aromatics Other aromatics Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 8.005550137 8.10212503 7.65401699 7.900610199 7.546720716 7.640520743 7.726487109 7.729289898 7.859983283 7.839862233 7.64705941 218223651 ara Carbon cycling Carbon degradation Hemicellulose Parabacteroides johnsonii DSM 18315 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides johnsonii; 8.053656243 7.973489841 8.176785262 7.3988562 7.301705191 7.240646 7.732135827 7.363461808 7.351620582 7.238488016 238920911 sigma_24 Stress Sigma factors Edwardsiella ictaluri 93-146 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella ictaluri; 8.159400975 8.07937671 7.872389456 7.73151205 7.535254753 7.469850469 7.850092552 7.841832873 7.706626457 7.523650921 7.561511061 238785162 phoA Stress Phosphate limitation Yersinia bercovieri ATCC 43970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 8.496856488 8.23483416 8.554536316 8.053190942 7.85426417 7.846979996 7.275584578 7.258654888 8.287558651 7.430195589 7.60993939 7.865734454 238698716 SMR_antibiotics Antibiotic resistance transporter Yersinia kristensenii ATCC 33638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia kristensenii; 8.64672935 8.353792786 8.35556757 8.572205807 8.29296463 8.275162497 8.187761199 8.27397294 8.052483962 8.321663678 7.620541836 116634799 narG Nitrogen Denitrification uncultured bacterium 8.296337668 8.249158313 8.369265657 7.280224386 7.590774683 7.776963685 7.17983556 7.331580762 7.511302463 7.601067275 220963587 fnr Stress Oxygen stress Caulobacter crescentus NA1000 8.351048708 8.474051818 7.818360881 7.551741612 7.632434116 7.992237519 7.732188445 7.878923895 7.835212213 7.935330693 219851773 dsrA Sulphur sulfite reductase Candidatus Methanosphaerula palustris E1-9c superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;genus:Methanosphaerula;species:Methanosphaerula palustris; 8.581610941 8.73256626 8.575058083 8.213457995 8.355308694 8.355876573 8.487470165 8.45459037 8.406498408 8.625765162 8.530682989 8.65549362 146273160 glnA Stress Nitrogen limitation Pelotomaculum thermopropionicum SI 9.024546308 8.948440943 8.662900086 8.169384885 8.116327113 8.162523749 8.038824329 8.098483824 8.231199356 8.085952489 8.427520134 85035920 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 9.150368705 9.210775566 9.2711158 8.288086322 8.225637597 8.234970802 8.057497321 7.796562665 8.183351877 8.005860081 8.371545577 115422210 sigma_24 Stress Sigma factors Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 9.373737475 9.483568076 9.651447861 8.713474689 8.611615814 8.699501292 8.882167879 8.470567013 8.727591782 8.74650692 8.92659483 116626551 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 9.352495665 9.13297863 9.447931057 8.530438367 8.655644101 8.562634913 8.891474395 8.701844534 8.62970612 8.63238296 8.595663133 8.867421188 145047059 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Polynucleobacter sp. QLW-P1DMWA-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 8.507667719 8.356454495 8.867115347 8.107058906 8.189298034 8.402408266 8.188302909 8.709944116 8.448497921 8.825858329 8.895114787 8.562390627 78186504 dnaK Stress Heat shock Chlorobium luteolum DSM 273 8.115266506 8.117962029 8.029562052 8.054557855 7.789003408 7.788125341 7.952999808 7.519681268 8.302798239 7.890959469 7.811681703 7.668315775 86571311 fnr Stress Oxygen stress Rhodopseudomonas palustris HaA2 9.19208711 8.254145643 8.419224632 8.812861064 8.640654538 8.600638846 8.741069008 8.685430837 8.468913719 8.59056458 8.739646912 8.315258826 13172282 Catechol Organic Remediation Aromatics Other aromatics Streptomyces setonii superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.459429533 8.989154317 8.642738875 9.197745022 9.175524944 8.740143297 9.015636927 9.389974529 9.076805279 9.057389288 8.732395047 9.114402437 212534768 AceA Carbon cycling Carbon degradation others Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 8.602605834 8.3384883 8.19051152 8.07976686 7.99880941 8.175912739 8.430204229 8.061396748 8.282131299 8.012030062 7.979358889 7.930312376 254462628 xylA Carbon cycling Carbon degradation Hemicellulose Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 9.518299079 9.047589756 9.045731319 8.409925507 8.629388232 8.642188821 8.907931992 8.563993598 9.341618603 9.143116897 9.054959582 8.90574404 118743723 hydrogenase Energy process Energy process Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 8.792183588 8.483327676 8.553462904 8.363844649 8.361135837 8.482967463 8.184848882 8.041452212 8.711186728 7.996553075 8.434946108 8.260002009 227338689 gdh Nitrogen Ammonification Rhizobium sp. NGR234 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 7.486954332 7.595719472 8.026393466 8.192140086 7.413680017 8.109603439 7.5881588 7.226059166 7.992440787 118462395 tfdA Organic Remediation Aromatics Chlorinated aromatics Mycobacterium avium 104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 8.495429262 8.675127628 8.06809054 8.409572315 8.4891374 8.436516066 8.563622643 8.797149109 8.615805804 8.703946502 8.697784064 8.677405812 118469373 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.511303882 8.355819493 8.252804341 7.599429952 8.25185769 8.455340878 8.397235676 8.270719104 8.47916479 8.220199507 8.305575779 8.048869387 12744271 nosZ Nitrogen Denitrification uncultured temperate forest soil bacterium CZ1441 superkingdom:Bacteria; 9.897165322 9.741431189 9.473053353 10.00898938 10.2296734 9.788297477 10.15802025 9.913018599 9.735185874 9.858311639 9.850939269 9.357319751 229610691 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.23744828 7.384801723 7.41636092 7.014121465 6.98719422 7.400863116 6.993039575 7.52640634 163848955 ppx Phosphorus Phosphorus utilization Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 8.179727381 8.382689928 8.123851163 7.540440924 7.645174752 7.45509977 7.628551248 7.936143333 7.56848709 7.356462831 7.698002822 170747446 Arylest Organic Remediation Aromatics Other aromatics Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 8.803531769 9.152461329 8.976919135 8.803611274 9.068243636 8.78911318 8.590017036 9.114993092 8.786454334 8.806796507 8.8503984 8.993367021 184154481 gyrB other category gyrB Lactobacillus fermentum IFO 3956 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus fermentum; 8.393994607 8.384287735 7.565801269 8.123638346 8.069158238 8.308953325 8.533095473 8.172786356 8.531950039 7.944661032 8.138761484 139478613 mer Metal Resistance Mercury uncultured actinobacterium superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 8.547071354 7.823886005 8.454357278 8.21384616 8.322045395 8.030130499 8.044936872 8.393689136 8.557895574 8.422988958 256671387 B_lactamase_C Antibiotic resistance Beta-lactamases Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 10.17252597 10.34146757 10.10987017 9.32540461 9.677625316 9.663747026 10.27756029 9.286368328 10.21866306 9.589874027 9.451986756 9.798460095 160886295 sigma_24 Stress Sigma factors Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 8.69040988 8.545443373 8.731747822 7.707713671 7.74472619 7.64602176 7.219080798 7.339554999 7.888695178 7.529256004 7.497856491 7.45298534 88702645 nosZ Nitrogen Denitrification uncultured soil bacterium superkingdom:Bacteria; 9.49792833 9.434236087 9.329761815 8.827381289 8.686308398 8.554984648 8.875755229 8.563979742 8.935130647 8.738009761 8.786780222 8.960831728 158440951 pstB Stress Phosphate limitation Clostridium bolteae ATCC BAA-613 9.324385294 9.163401428 9.223436627 8.789783117 8.613112156 8.767397989 8.719494133 8.652751495 8.753158462 8.623856489 8.798816916 8.833725627 196173422 cytochrome Energy process Energy process Anaeromyxobacter sp. K superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 9.892663954 9.803249391 9.773631278 8.82014827 9.006390149 8.905072678 9.23269726 8.98820197 9.251850144 8.941044041 9.210069182 9.198789435 77995993 clpC Stress Protein stress Carboxydothermus hydrogenoformans Z-2901 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Carboxydothermus;species:Carboxydothermus hydrogenoformans; 8.823846388 8.725698831 8.027998915 8.004828332 7.815131797 8.195725993 7.816572574 8.331956972 7.87143882 7.96286184 8.145602673 88805610 TerC Metal Resistance Tellurium Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 9.343206162 9.216157252 9.464871771 8.68522341 8.679494054 8.713004438 8.300225075 8.40019278 8.606002509 8.505329201 8.839660114 167951037 CusA Metal Resistance Copper Endoriftia persephone 'Hot96_1+Hot96_2' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Endoriftia;species:Endoriftia persephone; 8.73401794 8.586262318 8.372760192 8.309982918 8.116545105 8.2956689 8.258720525 8.152495672 8.381447301 8.213748914 8.328467372 8.234537378 157316343 ahpF Stress Oxygen stress Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 8.268308415 7.842365492 7.221371488 7.081704436 7.478911547 7.162851373 7.797708095 7.303762483 7.028903955 7.358467488 6689530 sigma_24 Stress Sigma factors Xanthomonas campestris superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas; 8.566461359 8.335393401 8.599773078 7.778966236 7.802466337 7.838349347 7.814391343 7.691232726 8.15539533 7.802818905 7.806844128 7.7216293 238706080 proW Stress Osmotic stress Yersinia ruckeri ATCC 29473 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia ruckeri; 7.995370757 7.889429583 8.262290858 7.98777097 7.86799335 7.562152376 7.724073082 7.5661305 7.883003903 7.823263431 7.524089559 7.22996177 213960764 gyrB other category gyrB Propionibacterium acnes SK137 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 9.38399078 9.190433492 8.214592472 8.030658665 8.027482665 8.056946465 7.845559009 8.649445004 8.618661578 116665468 pstC Stress Phosphate limitation Methanosaeta thermophila PT superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosaetaceae;genus:Methanosaeta;species:Methanosaeta thermophila; 9.071397229 8.920418398 9.106750248 8.752859671 8.663515173 8.426733186 8.345528466 8.447719419 8.605310376 8.445971865 8.341123086 8.597129117 118002872 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.769749876 8.198276173 8.389564996 8.178832157 8.005154903 8.442690508 8.340634047 8.196822695 7.796169622 8.233472471 84694163 bphC Organic Remediation Aromatics Polycyclic aromatics Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8.79341226 8.453079105 8.177863012 8.69023757 8.583594105 8.66671164 8.145836428 8.976950658 8.411774628 8.634514915 8.62743897 8.875715877 217504384 mer Metal Resistance Mercury Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 9.474882096 9.479758877 9.569267288 9.438697843 9.262005268 9.264358509 9.043828476 9.377429802 8.703823802 9.352916962 9.452737943 9.249600193 126208731 CopA Metal Resistance Copper Actinobacillus pleuropneumoniae L20 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus pleuropneumoniae; 8.660533847 8.492261973 8.748651339 8.189702736 8.127937823 7.907932559 8.070314299 7.751177889 8.287028991 7.982237393 8.100316474 8.266940438 268612807 pstB Stress Phosphate limitation Sebaldella termitidis ATCC 33386 8.173957116 7.758703614 8.027726642 6.901157321 7.323492588 7.230595695 6.985559131 6.720680907 7.334831318 6.943655351 7.196703291 7.15623403 163858505 silC Metal Resistance Silver Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 8.950349224 8.774682705 8.853017028 8.717992791 8.500350348 8.319328193 8.511895362 8.58360165 8.717647457 8.478994344 8.498265002 8.652093235 34419589 contractile_tail_sheath_protein Bacteria phage STRUCTURAL Vibrio phage KVP40 order:Caudovirales;family:Myoviridae;genus:T4-like viruses;species:Vibrio phage nt-1 sensu lato; 8.369842478 8.156510182 8.297102734 7.93042476 7.842279083 7.975179594 7.293827484 8.035966086 7.920378057 7.897003073 7.807147446 7.735904374 188583361 sox Sulphur Sulphur oxidation Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 9.368257661 9.392976339 9.18994529 8.75885074 8.748029042 8.669353745 8.940907906 8.916232481 9.042333323 9.204085589 9.145517593 9.151294324 89274952 bphD Organic Remediation Aromatics Polycyclic aromatics Rhodococcus sp. R04 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.253628763 8.424825829 8.230164497 8.516608263 8.616081775 8.59574711 8.758007323 8.82821003 8.461711768 8.553463122 8.577618038 71383720 nasA Nitrogen Assimilatory N reduction Synechococcus sp. WH 7803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.502593232 8.516400491 8.695424141 9.003005029 8.91417417 8.621611751 8.603810844 9.21593501 8.646072083 8.960120997 8.646631634 8.958206304 260662122 hly virulence hemolysin Lactobacillus fermentum 28-3-CHN superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus fermentum; 8.512359615 8.543016685 8.794885347 8.083691333 8.03249839 8.000007437 7.641440422 7.783910964 8.119291431 7.644297727 7.774893392 8.1608019 86359036 HBH Organic Remediation Aromatics BTEX and related aromatics Rhizobium etli CFN 42 8.32642537 8.34502677 8.159771024 7.694730568 7.792195189 8.050981305 8.002437553 7.70854085 7.864057574 7.459274208 7.803779138 56314165 alkK Organic Remediation Others Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 8.53510861 8.296904611 7.990469368 8.241358984 8.189128606 8.027735073 8.186494551 8.182155327 8.289927363 119670679 mhpB Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. BH72 8.991548936 9.024270558 9.245494711 8.651616678 8.53968568 8.632758796 8.507542261 7.57824618 8.268783792 8.162237954 8.525604133 227408274 glnA Stress Nitrogen limitation Geodermatophilus obscurus DSM 43160 8.281926884 8.753210068 8.585452179 8.669108757 8.533907514 8.50454133 8.694915515 8.751618908 8.903773414 8.64529735 8.443931553 108803097 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 9.350711563 9.465013181 9.367933946 8.820912639 8.728101855 8.846199135 8.983233872 8.948275676 8.892801373 8.867345687 8.929160495 9.015762875 94312941 pcaG Organic Remediation Aromatics Other aromatics Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 11.41111188 10.64610229 10.64794834 11.02678415 10.70638154 10.27398588 10.9516899 10.80101298 11.22010816 10.80980314 10.81711729 10.46324036 283946664 sigma_70 Stress Sigma factors Conexibacter woesei DSM 14684 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Conexibacteraceae;genus:Conexibacter;species:Conexibacter woesei; 8.905629635 9.102564628 8.808628747 8.955116541 9.297443402 254982574 cytochrome Energy process Energy process Geobacter sp. M18 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.459287294 8.506444786 8.120337487 8.512163701 8.359606976 8.667700441 8.34989557 8.799218649 8.043233173 8.177196637 8.176776306 72121379 fnr Stress Oxygen stress Ralstonia eutropha JMP134 8.603765033 8.777350616 8.845914553 8.592729105 8.697589724 9.183149495 9.00994937 8.877771111 8.965413613 9.108410638 8.937715807 78169254 todF Organic Remediation Others Synechococcus sp. CC9902 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.410890828 8.482649467 8.007821627 8.474507628 8.647511831 8.502323164 8.509338889 8.154806548 8.320802362 46850218 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 11.29833831 11.07820568 11.3058833 10.31384245 10.23643757 10.25644008 10.51872367 9.880734632 10.64681758 10.35243497 10.51751905 10.39799428 198259263 cda Carbon cycling Carbon degradation Starch Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 9.697878768 9.561322966 9.452108192 9.426625637 9.434842717 9.194670239 9.566716447 9.378942797 9.567397741 9.250757319 9.316915899 9.068645528 119716968 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 9.675145103 9.572357904 9.344722863 8.653463703 9.090967664 9.245233851 9.759807826 8.422306376 9.695479398 8.970917563 8.865267918 9.199464996 88176785 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 8.262356427 8.525661976 8.584288035 7.569869453 7.509974016 7.474138154 7.792646508 7.489353207 7.897526365 7.6674826 7.470061009 7.90488841 190700161 nmoA Organic Remediation Aromatics Nitoaromatics Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 9.438597303 9.328592146 9.353057659 8.994557862 9.043979846 9.220007213 8.97170354 8.686019802 8.945833983 8.848136731 9.131827728 8.832528878 48527134 mcrA Carbon cycling Methane Methane production uncultured Methanomicrobiales archaeon superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales; 8.245850131 8.265220519 8.300284566 7.808915729 8.474094802 8.297306161 8.324474852 8.439036657 8.009305461 8.271373595 7.946402934 240862742 sigma_24 Stress Sigma factors Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.808276021 8.584930908 8.925743797 8.055657375 8.048762089 8.07036517 8.048025397 7.986521526 8.39077214 8.01976389 7.844965915 8.201429278 151365178 cda Carbon cycling Carbon degradation Starch Shewanella baltica OS185 7.766792258 7.306345929 7.29049603 7.066378457 7.609635314 7.427478557 7.524481588 187984734 ChrA Metal Resistance Chromium Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 10.40349051 9.970009388 10.06816732 10.56524182 10.40965476 10.19113256 10.59982 10.44354113 10.30877875 10.33889549 10.22778522 10.26656398 111024950 phtA Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.587390693 8.649117911 8.3175455 8.28344915 8.121932642 8.053199583 7.98637372 7.968152269 8.127885934 8.175793778 8.008328368 8.02444644 6599035 holin_type_2 Bacteria phage LYSIS Bacteriophage phiYeO3-12 order:Caudovirales;family:Podoviridae;genus:T7-like viruses; 8.926945658 8.848054137 9.234056326 8.385995382 8.695838077 8.721981517 8.849172304 8.647566137 8.889067446 8.760233255 8.89139 9.013241201 163702536 pnbA Organic Remediation Aromatics Nitoaromatics Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 8.633336354 8.489359899 8.706394234 8.354978402 8.168953394 8.6020505 8.472357987 8.366391864 8.841587058 8.127862169 8.285466776 8.479690037 148543345 nifH Nitrogen Nitrogen fixation Lactobacillus reuteri F275 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus reuteri; 8.595534737 8.351945275 8.559728121 8.080118744 8.121232557 8.020844204 8.219600833 8.084350103 8.183691556 8.079770592 8.294407418 8.044085162 190013343 pimF Organic Remediation Aromatics Aromatic carboxylic acid Stenotrophomonas maltophilia K279a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 9.092657645 9.316100085 9.209616056 8.752309046 8.738164114 9.037320557 9.351175577 8.871518126 9.277767521 9.047041324 9.068244742 9.122776257 91687593 nmoA Organic Remediation Aromatics Nitoaromatics Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.570085 8.422043035 7.823849175 7.667482822 8.070542227 8.448176345 7.786092188 8.376286085 7.465537145 7.295155962 7.6784929 227818439 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 8.093155793 8.460643469 8.487362959 7.687250351 8.020378794 8.148252315 8.541362106 8.03580942 8.801631032 7.968732915 8.114180747 7.976764463 21219022 nagG Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.77197994 8.638653268 8.403044682 8.890030682 8.540252493 8.134150235 8.665673815 8.790897457 8.699400923 8.632903113 8.477708261 8.276715902 107027283 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Burkholderia cenocepacia AU 1054 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 9.826507922 10.24569908 9.484544898 9.152706187 9.832214152 10.38527291 9.662680366 10.04307929 9.355567538 9.621546936 9.39546934 99030607 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 9.112557331 8.945196038 9.187458473 9.039869165 8.581893669 8.549092388 8.979859386 8.330446015 8.854666267 8.478632959 110825054 akbA Organic Remediation Aromatics BTEX and related aromatics Rhodococcus jostii RHA1 9.182066279 9.059366836 9.38003695 8.443806643 8.423954923 8.265855525 8.382021107 8.179528447 8.263723077 8.176323331 8.105179945 8.658390332 237883139 pstB Stress Phosphate limitation Micromonospora sp. ATCC 39149 8.77995867 9.016914926 8.470235732 8.492676819 8.522630015 8.98442107 9.262577503 8.605885093 9.149108357 8.57958131 8.816301444 8.758514602 104781695 nagL Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas entomophila L48 8.630894047 8.159393962 8.548310367 8.256467455 8.375194911 8.193081547 7.961057794 8.514258294 8.540399084 8.490721838 8.526348509 8.164592906 218760663 pstA Stress Phosphate limitation Desulfatibacillum alkenivorans AK-01 8.840561763 8.616460054 8.089568077 8.125114696 7.970037536 8.369931708 8.454136746 8.339828456 8.469484804 8.375785887 8.399363659 256379846 fnr Stress Oxygen stress Actinosynnema mirum DSM 43827 9.326454244 9.139951402 9.171613466 8.654804041 8.833713589 8.782771452 9.034661072 8.335176602 9.255978083 8.671426419 8.812550539 8.78062565 46205316 sigma_70 Stress Sigma factors Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 8.62134936 8.959415189 8.616092607 8.778737559 8.599344817 8.499535844 9.121023332 8.809352642 9.107566771 8.934313278 8.875944452 29609230 hrcA Stress Heat shock Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 9.2602084 9.1291937 9.360312242 8.68262501 8.534138833 8.525988851 8.425078209 8.379001149 8.47524851 8.609787024 8.550098926 8.81890623 150963145 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.235020632 8.357754944 8.115308651 7.825927406 7.463726717 7.868170535 7.585546571 8.120891894 7.85798134 7.855328753 7.632206956 40787206 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. DK17 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.581374032 8.310520187 8.401545577 8.507492659 8.358758113 7.893590517 8.138958819 8.454917275 8.184797005 8.567076832 8.503778722 8.516700884 206677249 gyrB other category gyrB Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.170266657 8.271166091 8.091069421 8.094640438 8.128038526 7.638089601 8.152902257 7.964507079 7.892402574 8.118934334 7.85383707 109804235 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.634060135 8.933274 8.650356984 8.527475032 7.939712951 8.911378078 8.349277372 8.973157343 7.976005494 7.929432758 7.966334856 19848218 mer Metal Resistance Mercury Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.813279801 8.725250866 8.71863558 8.444820624 8.344120111 8.159241067 8.404986393 8.837916951 8.373240046 8.788256851 8.543672355 8.650146309 145250421 glnA Stress Nitrogen limitation Aspergillus niger 8.671007346 8.642851097 8.39837334 8.908270564 8.546785743 8.725567615 8.037630284 8.237099838 33867146 CadA Metal Resistance Cadmium Rhodococcus erythropolis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 10.27503188 10.36008504 10.00346148 10.02577776 10.05368791 10.37365718 10.59827699 10.23741503 10.1024317 9.77612874 9.98206672 9.883776013 34979594 amyA Carbon cycling Carbon degradation Starch Bacillus subtilis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 8.04429946 7.88282572 8.33412074 8.200906032 8.400049009 7.960808933 8.614300532 8.027245237 8.366113132 8.660149463 8.058773372 72119283 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.326826635 8.138507813 8.354164463 8.862561768 8.77188701 8.754568891 8.754259342 8.780215095 8.793716676 8.762568319 8.589256623 8.205918063 71023811 Catechol Organic Remediation Aromatics Other aromatics Ustilago maydis 521 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Ustilaginomycetes;order:Ustilaginales;family:Ustilaginaceae;genus:Ustilago;species:Ustilago maydis; 8.886570671 8.779873733 8.8578931 7.945266018 8.324991321 8.731231438 7.804610801 8.776653393 8.09309962 8.025499723 8.228915739 145601813 nagG Organic Remediation Aromatics Aromatic carboxylic acid Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 9.302848873 9.212319277 9.448756832 9.022378766 8.919819924 8.850014277 8.829047818 8.836208941 8.778770298 8.802845387 8.766554031 225194037 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9.037454754 9.008591727 8.892413643 8.327602417 8.544204047 8.562596398 8.552568253 8.135315979 8.304608844 8.290465067 8.536901366 126233672 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.555313417 9.032884467 8.997393586 8.171851072 8.408187346 8.96966587 9.114825443 8.600485146 9.10730091 8.576199552 8.338213035 8.538649757 256776284 ABC_antibiotic_transporter Antibiotic resistance transporter Streptomyces hygroscopicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces hygroscopicus; 8.518481609 8.388907254 8.353056912 8.278593648 8.353803033 8.007120783 7.967597321 8.47404873 8.332880459 8.490890653 8.240718581 8.109785036 118468526 CDH Carbon cycling Carbon degradation Cellulose Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.652145712 8.63608888 8.406902429 8.377971838 8.436282796 8.195873357 8.309455885 8.280942354 8.448378811 8.765595237 8.609576482 8.556176515 152989417 SMR_antibiotics Antibiotic resistance transporter Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.393574788 8.281601932 8.494983114 8.425461413 8.280414076 7.938504878 8.146276225 8.439614118 8.441800503 8.357730337 8.144322489 8.517645951 134135536 CopA Metal Resistance Copper Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 8.41367055 8.191589585 8.172055041 8.183822553 8.119251618 8.02430897 8.129338933 8.476088569 8.175481311 8.267799672 8.007458121 8.130961105 164636325 amyA Carbon cycling Carbon degradation Starch Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 9.424430233 9.353088351 9.378532063 9.276580062 9.172161398 8.862585219 9.2058804 9.573585581 9.220402171 9.458038699 9.193613088 9.520201254 71914412 pimF Organic Remediation Aromatics Aromatic carboxylic acid Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 8.791715685 8.787157572 8.56301158 8.259109126 8.115346722 8.030672009 7.892696075 8.347875441 8.21589061 8.216810485 8.157526866 7.912441968 209492047 sigma_24 Stress Sigma factors Arthrospira maxima CS-328 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira maxima; 7.767898213 8.157433158 7.374401224 7.110347434 7.205294178 6.867646272 6.934595192 7.614341329 7.22805636 7.074576863 7.201436238 28811240 pstB Stress Phosphate limitation Streptococcus pyogenes SSI-1 8.220106087 7.917659712 8.383963106 7.638539716 7.225718713 7.251583241 106764150 TerZ Metal Resistance Tellurium Psychromonas ingrahamii 37 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas;species:Psychromonas ingrahamii; 8.746832733 8.544174864 8.573219013 7.76982592 7.647087069 7.825507604 7.302408805 7.069842309 7.724345294 7.667115607 7.884347177 229764948 hrcA Stress Heat shock Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 8.791097473 8.928081688 8.619954474 8.792167916 8.71078145 8.903863697 9.271192797 8.945229761 8.784555309 8.647128404 8.767720552 8.89195551 113868120 pcc Carbon cycling Carbon fixation Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 7.16346062 7.420008933 7.334402482 8.094852706 7.121589974 7.06794424 7.433880781 94428107 pstB Stress Phosphate limitation Oceanobacter sp. RED65 8.204954867 8.723471339 8.429453445 7.985965968 7.909712375 8.232995388 8.509750498 8.211760405 8.30846502 8.109471916 8.657928797 8.495278756 84871618 carA Organic Remediation Aromatics Heterocyclic aromatics Sphingomonas sp. KA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.894392762 9.06732249 8.646971889 9.315558385 9.286522233 9.054340938 9.079668779 9.319523032 8.974010819 9.089494505 9.062482408 8.708906296 148834521 obgE Stress Radiation stress Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 10.77546508 10.54406464 10.55521189 10.25837794 10.25080249 10.24601118 10.2971745 10.61621504 10.30712873 10.47981293 10.63890914 9.914172513 88710156 xylA Carbon cycling Carbon degradation Hemicellulose Flavobacteriales bacterium HTCC2170 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales; 8.420025194 8.359749953 8.480257919 7.791446344 7.705387959 7.787571477 7.92713927 7.736097044 7.749189826 7.821272568 7.824085983 8.011223751 86136892 linB Organic Remediation Pesticides related compound Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.387642605 8.537635958 8.533000114 8.221556783 8.161276307 8.112807999 8.183107313 8.463437614 8.476304936 8.565063291 8.256065317 8.400735156 77465534 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacter sphaeroides 2.4.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 8.624191133 8.527957307 8.673892308 8.347163282 8.486196 8.506577408 8.029437783 8.186081857 8.261686763 8.383352271 7.743662382 217507466 hrcA Stress Heat shock Thauera sp. MZ1T superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 9.626144202 9.607692801 9.416901225 9.343348633 9.405423504 9.274460304 9.423268194 9.467318714 9.512459879 9.198618006 9.198519306 9.614915788 151563042 oxyR Stress Oxygen stress Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 9.551314214 9.495262603 9.537687171 8.698509959 8.756907281 8.862827195 8.907532335 8.721762733 8.761319607 8.74746136 8.858248518 8.973042136 32307993 narG Nitrogen Denitrification uncultured bacterium 8.7287409 8.570436538 8.157066654 8.554551751 8.781171123 8.814587923 8.573474311 8.976352382 8.84371777 8.808094227 8.997498745 8.86730755 207091031 sigma_70 Stress Sigma factors Nitrosococcus oceani AFC27 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 8.016252493 8.08806926 8.342925174 7.508614267 7.139165888 7.851357179 7.490057827 7.476475509 8.018719342 7.598778687 7.48432728 7.53520997 167365977 4HBH Organic Remediation Aromatics BTEX and related aromatics Rhodopseudomonas palustris TIE-1 9.086157462 8.701304489 8.769891345 8.604152101 8.810412676 8.797437262 9.32400881 8.307495175 9.29901989 8.486135821 8.332332602 8.40772558 256560843 ara Carbon cycling Carbon degradation Hemicellulose Brachybacterium faecium DSM 4810 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermabacteraceae;genus:Brachybacterium;species:Brachybacterium faecium; 8.581633134 8.519640994 8.397490388 8.185113683 8.146702845 8.474187845 8.799615233 7.830870503 8.766298726 8.067465223 8.25217452 8.285006786 186472582 MFS_antibiotic Antibiotic resistance transporter Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.213827193 7.995485316 8.529711564 8.250971054 7.966318827 8.20177806 8.152409703 8.349569296 7.942553584 7.746106835 8.15875904 116633918 narG Nitrogen Denitrification uncultured bacterium 8.905142298 8.897092814 8.997317046 7.88170975 8.603933675 9.024213204 8.681565917 8.695805592 8.932111133 54027836 ArsC Metal Resistance Arsenic Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 9.07439571 9.227090353 8.845346134 8.770302315 9.049388998 9.12367319 9.451200523 9.207127929 9.267451196 9.346435881 9.573405869 9.376240493 256396128 sigma_70 Stress Sigma factors Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 8.485128426 8.728483231 8.442578598 8.097256086 7.740836571 8.087477599 8.61838541 8.1842624 8.321389777 8.197669282 8.163794947 7.844286096 156233710 catechol_B Organic Remediation Aromatics Other aromatics Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 8.189866422 8.160584457 7.964866092 7.500910897 7.559767856 7.34690247 7.370209991 7.597800294 7.316842858 7.529864005 7.609887537 182634425 ppx Phosphorus Phosphorus utilization Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 9.194287906 9.175420292 9.286816714 8.169593955 8.263288302 8.382107284 8.649860313 7.932630157 8.955515897 8.265488339 8.433355075 8.372871031 167577803 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Burkholderia thailandensis TXDOH superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 8.634558789 8.29701225 8.396494979 8.431461356 8.263897377 8.314594563 7.839863531 8.410189829 8.395181811 8.16390241 8.194553079 8.216469778 161391568 ChrA Metal Resistance Chromium Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 8.191537837 8.044473685 8.092185021 7.887500561 7.974011124 8.150907117 7.995401385 7.786027378 7.613601881 282561667 sigma_24 Stress Sigma factors Streptomyces sp. ACTE superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.244813877 8.303165741 8.431767193 8.196508278 8.146364308 8.245377553 8.356236817 7.995302888 8.273270413 8.153440408 7.773413502 262264575 nirK Nitrogen Denitrification Haloferax mediterranei ATCC 33500 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax;species:Haloferax mediterranei; 8.072640882 7.953994544 7.839454816 7.909664859 8.010406516 7.738810528 8.190171594 8.15799884 8.034089722 8.204423375 138895549 alkH Organic Remediation Other Hydrocarbons Geobacillus thermodenitrificans NG80-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermodenitrificans; 8.218074261 8.21149833 8.412194138 8.2154964 8.151383515 8.01700751 7.860248361 8.063946497 8.04241934 8.185953751 8.362969593 7.854953902 228309179 ahpC Stress Oxygen stress Porphyromonas uenonis 60-3 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas;species:Porphyromonas uenonis; 8.253803477 8.081750165 7.50282709 7.576146576 7.714553085 7.215694889 7.445439806 7.841798655 7.320618698 7.375712206 7.595107886 146279338 oxyR Stress Oxygen stress Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 8.271230771 8.600499626 8.822752174 7.8885666 7.695126303 8.041760802 8.014823615 8.062330458 8.237803458 7.973796424 8.21375577 8.005596326 1652922 pstB Stress Phosphate limitation Synechocystis sp. PCC 6803 8.476860032 8.386091885 8.632500116 8.0837351 7.944043854 7.902931918 7.572430119 7.528769031 7.886082972 7.794670833 7.598745825 8.019529293 88818629 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Pseudoalteromonas tunicata D2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas tunicata; 8.52018339 8.331857995 8.584753516 7.975616546 8.034401671 8.505430468 8.362894033 8.404984427 8.691577621 8.774554731 8.442446746 225088560 AceA Carbon cycling Carbon degradation others gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.624098876 8.477425241 8.541594647 8.072035784 7.874977099 7.937645999 7.817287626 8.206448645 8.354864315 7.709668956 7.696044124 221082971 pcc Carbon cycling Carbon fixation Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 9.409302754 9.126291356 8.986339628 8.892140774 8.955687695 9.020997896 9.115585241 9.030333059 9.224417835 9.3136505 9.316485233 9.146576371 197210223 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.637646822 8.794132656 8.997883428 8.370718066 8.501196845 8.293574138 8.082525642 8.310898387 8.430207328 8.167889252 8.403206831 8.247642843 145232927 endochitinase Carbon cycling Carbon degradation Chitin Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8.304223353 8.483348613 8.607671533 7.848634807 7.874459205 7.919026089 8.403261315 7.735959609 8.770331868 7.69552713 7.591482828 7.802605296 119963032 nmoA Organic Remediation Aromatics Nitoaromatics Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 9.045326392 9.064394903 8.999458416 8.768627093 8.7778439 8.686933796 8.711064733 8.642230591 9.058136196 8.866031899 8.698981517 8.750740483 110816913 nhh Organic Remediation Aromatics Nitoaromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.906325423 8.947602155 8.919986913 8.913197946 8.946697948 8.801753498 8.64021115 9.320640716 8.530662798 9.099089606 9.078175963 9.203020013 51855065 pstB Stress Phosphate limitation Symbiobacterium thermophilum IAM 14863 8.791196544 8.645909218 9.061378142 8.653666309 8.783794744 8.644832897 8.712698524 9.083101334 8.599896259 8.662863557 8.563808896 112462455 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.701877197 8.633018574 8.469907112 8.06903722 8.003347419 7.935895391 7.829398188 7.911694753 8.117016202 8.008075877 7.895452596 8.125863293 66575509 catB Organic Remediation Aromatics BTEX and related aromatics Xanthomonas campestris pv. campestris str. 8004 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 8.626345457 8.630427629 8.378007608 8.336424943 8.326542627 8.683846307 8.968211047 8.553097067 8.463993199 8.209031882 8.294768835 7.967176775 209498866 ahpC Stress Oxygen stress Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.177911117 8.394728205 8.471004928 7.406610506 7.765305657 8.165111529 7.658418219 7.249519025 8.379870876 7.530573457 7.908454075 7.634027922 119959060 xylA Carbon cycling Carbon degradation Hemicellulose Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.410925944 8.606196405 8.233845414 7.993588038 8.558786717 8.733520995 8.310398465 8.350241429 8.026710948 8.007447007 7.917801463 108461216 bphA Organic Remediation Aromatics Polycyclic aromatics Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 9.56400316 9.528114996 9.643599885 9.099106638 8.694065854 8.888285557 9.019525473 8.816691231 9.004979419 8.848656877 8.91254931 9.107960812 163119646 CopA Metal Resistance Copper Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 8.228234342 8.176553345 7.487510905 7.380185294 7.361253403 7.132120359 6.766419313 7.376211794 7.301571114 6.926224093 7.396188125 254511529 oxyR Stress Oxygen stress Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 8.840081654 8.753167361 9.189389454 8.587884732 8.555459907 8.2615293 8.116406585 8.289138367 8.317676971 8.562063816 8.486855791 87331832 nahA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 8.861181116 8.979881411 9.041857957 8.397681262 8.297493819 8.310478488 8.034698186 8.048436116 8.186690244 7.980217395 7.981307897 8.43046882 257464031 sigma_70 Stress Sigma factors Fusobacterium sp. D12 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteria;order:Fusobacteriales;family:Fusobacteriaceae;genus:Fusobacterium; 8.00318992 8.002936934 7.951041799 8.206858411 8.42029078 8.274911694 8.708677794 8.301768517 8.923531157 8.893723054 8.875927419 241866382 pstB Stress Phosphate limitation Sphingobacterium spiritivorum ATCC 33861 8.278113514 8.322396033 8.441733843 8.015329167 7.888724541 7.784909358 7.113342953 7.960832884 7.758206443 7.501933911 7.515982818 7.602450648 196228739 qorL Organic Remediation Aromatics Polycyclic aromatics Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 9.901512027 10.04616875 10.13186201 9.477659011 9.07960368 9.248358424 9.429630308 9.527538298 9.081764851 9.538908157 9.536912097 9.747203481 169606121 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 8.751037886 8.744861571 8.767758641 9.014974611 8.637763911 8.326376737 118467464 nmoA Organic Remediation Aromatics Nitoaromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.528313471 8.396986152 7.773725082 8.023704101 8.219453731 8.02389819 8.193503004 8.102021733 7.95446643 8.295466277 8.025980362 56799065 catechol_B Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 8.510236463 8.683315582 8.136468598 7.621094472 7.882070701 7.946850801 8.368746536 7.457766984 7.707994891 7.91475378 7.592763513 32895024 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.421468576 8.623386221 8.220035396 7.809859709 7.54373463 7.945378514 8.356136081 7.99932975 8.506528889 7.566392736 7.728830041 7.73133698 227493608 pstC Stress Phosphate limitation Mobiluncus curtisii ATCC 43063 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus curtisii; 9.029392922 8.828905196 8.806975961 8.920327295 8.960936395 8.715564351 8.68924741 8.892651438 8.738603823 8.746489227 8.89524893 78218513 pstC Stress Phosphate limitation Desulfovibrio desulfuricans subsp. desulfuricans str. G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 8.549489952 8.563513058 8.742559153 7.759450351 7.586969956 8.105894234 8.224129829 8.015402889 8.115078378 112464117 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.244766442 9.552864476 9.553287262 9.724645033 9.753003254 10.0075224 10.09436945 9.558196143 10.24967799 10.05692534 9.823459127 219666754 rd Organic Remediation Chlorinated solvents Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 8.196938933 8.338964811 8.143325902 7.150336137 7.388036631 7.183475414 6.790992056 7.520546664 7.741989539 146339296 tftH Organic Remediation Aromatics Chlorinated aromatics Bradyrhizobium sp. ORS278 9.37639594 9.475828905 9.421360038 8.800143992 8.719059797 8.719267434 8.777749213 8.458629479 8.695167158 8.658807414 8.60933907 8.829609786 227512856 clpC Stress Protein stress Lactobacillus buchneri ATCC 11577 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus buchneri; 7.258900693 7.200800497 7.314969031 7.438326278 6.983880057 7.964736254 7.040667329 7.164115936 68055722 pulA Carbon cycling Carbon degradation Starch Exiguobacterium sibiricum 255-15 8.796599817 9.010722354 8.622177705 9.133602686 9.006578315 9.315237911 8.861767959 9.314362327 8.660628707 9.253411876 9.459433457 8.928988698 157011530 AprA Sulphur adenylylsulfate reductase uncultured bacterium 8.321165876 8.104924878 8.147405917 7.015248994 7.503058185 7.624249534 7.839098784 7.137130012 8.035527702 7.527161121 7.840186357 157148630 ureC Nitrogen Ammonification Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 8.52872722 8.485219999 8.795672415 8.537081826 8.503076595 8.249917147 8.121119839 8.385621296 8.336023708 8.596051897 8.274956211 157406148 ArsC Metal Resistance Arsenic Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 8.730184015 9.222969004 9.09519157 8.621857855 8.59575227 9.185343052 9.358716108 8.942591687 9.313629961 8.65576248 8.738088696 9.081760974 163741757 phn Organic Remediation Herbicides related compound Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 8.560196038 8.382526679 8.562656903 7.532226835 7.938009953 7.695737031 7.660751601 7.577984671 7.969183536 7.490829808 7.794493251 7.947040694 162072851 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 8.580410958 8.35124719 8.368494893 8.503634165 8.121192312 8.781644294 8.584563546 8.730442593 8.884189628 171912370 gyrB other category gyrB Verrucomicrobium spinosum DSM 4136 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Verrucomicrobium;species:Verrucomicrobium spinosum; 8.091175122 8.303936299 7.31138855 7.455069599 7.625342238 7.765843836 7.057332583 7.566211782 7.441891994 7.110480995 7.161637513 50950765 pcc Carbon cycling Carbon fixation Leifsonia xyli subsp. xyli str. CTCB07 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Leifsonia;species:Leifsonia xyli; 8.962380068 9.100542271 8.806614725 8.471966646 8.445701187 8.225084088 8.227677001 8.556120292 8.446426464 8.510562993 8.624852689 8.738337642 167656214 clpC Stress Protein stress Eubacterium siraeum DSM 15702 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium siraeum; 7.967983102 7.588816848 7.397978466 8.523333208 7.39262067 7.63563156 8.238300675 186472614 phn Organic Remediation Herbicides related compound Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.140150422 8.109861657 8.627249189 8.332466597 7.980743718 8.600535986 8.369495998 8.332122251 8.304703162 8.358488617 8.413606439 212680362 TerC Metal Resistance Tellurium Providencia rustigianii DSM 4541 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 7.025187811 7.143247855 7.134174554 7.024259821 7.529338788 7.092854608 7.719928153 218763163 alkH Organic Remediation Other Hydrocarbons Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 9.408558298 9.492914758 9.453373794 8.787759656 8.874871032 8.876351796 9.57521115 8.978958919 9.563062978 8.782967825 8.761949727 8.862650627 89043141 ppx Phosphorus Phosphorus utilization Oceanicola granulosus HTCC2516 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 8.25620485 8.27043262 7.577651771 7.48992269 7.81121168 7.99916228 7.503597848 8.464386714 7.61714539 7.675293231 7.32162098 33577855 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bordetella bronchiseptica RB50 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella bronchiseptica; 9.688136032 9.555367798 9.49566715 9.151250023 9.312351185 9.321051918 9.151170852 9.505343798 9.300867512 9.589130152 9.458022054 268163202 pstB Stress Phosphate limitation Photobacterium damselae subsp. damselae CIP 102761 7.904133264 7.929960273 7.381943042 7.79382414 7.439319939 7.391601281 7.888161943 7.801552571 7.996681418 7.641319174 7.629665727 194100568 DNA_polymerase_type_I Bacteria phage REPLICATION Mycobacterium phage Nigel order:Caudovirales;family:Siphoviridae; 8.876302418 8.843837436 9.022606235 8.169009694 8.312730681 8.529859723 8.890587041 8.226868537 8.853867066 8.520539774 8.421514824 8.817181101 260897312 amyA Carbon cycling Carbon degradation Starch Vibrio parahaemolyticus Peru-466 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 8.538289265 8.377131659 8.689713157 7.880891821 8.258434893 8.46456684 8.590742223 7.967204606 8.786902353 8.308441849 8.377785829 8.227982434 71848480 cumA Organic Remediation Aromatics Other aromatics Dechloromonas aromatica RCB 8.973082454 8.647396213 8.526646339 8.032518395 8.235274173 8.513211541 8.396018729 8.093274256 8.576463306 8.280145049 8.301001441 8.294289054 219947163 Catechol Organic Remediation Aromatics Other aromatics Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 9.459030725 9.340927118 9.508248325 8.727462505 8.942368358 9.122113235 9.476874788 8.559477855 9.53737545 8.916505395 8.919882013 8.819047575 14520861 atzA Organic Remediation Herbicides related compound Pyrococcus abyssi GE5 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Pyrococcus;species:Pyrococcus abyssi; 8.587589425 8.360540492 8.748219269 7.934170728 8.087340702 8.066319349 7.79187835 7.523478431 7.699351305 7.336661749 8.041000787 154000349 TehB Metal Resistance Tellurium Candidatus Methanoregula boonei 6A8 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;genus:Candidatus Methanoregula;species:Candidatus Methanoregula boonei; 8.511756475 8.560127109 8.358949826 8.505471317 8.178497992 8.206465998 8.19365512 8.319598946 8.099742094 8.266018418 8.275186295 8.116834122 93004069 gyrB other category gyrB Helicobacter pullorum superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter; 8.620495217 8.443720668 8.638378278 7.442143231 7.271038117 7.492504316 7.437812034 7.354343672 7.606171673 145228641 MFS_antibiotic Antibiotic resistance transporter Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8.66156634 8.380491481 8.409560958 8.156849654 8.233175465 8.308503336 8.747410675 8.682264807 8.528280475 8.78772467 8.480981226 70728710 silC Metal Resistance Silver Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.441136225 8.382294728 7.299038161 7.482693942 8.084999651 7.704973697 7.416901104 7.545185785 8.195314432 260771281 sigma_24 Stress Sigma factors Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 8.194227177 8.184848579 8.290056502 8.035424446 7.454609605 7.571162379 7.943934782 7.523770437 8.048825474 7.504912092 7.565817332 7.624229735 219858415 nagG Organic Remediation Aromatics Aromatic carboxylic acid Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 8.41929405 8.134037922 8.102033343 8.426853919 8.263220899 8.224775288 8.438001722 8.236573891 8.176018226 8.137428525 8.321225232 7.846263592 163856301 SMR_antibiotics Antibiotic resistance transporter Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 8.163139058 8.231345184 7.987072374 8.222510335 8.151128388 8.060149638 7.964906949 7.81214571 7.70538806 120402513 scnABC Organic Remediation Others Mycobacterium vanbaalenii PYR-1 9.783492214 9.571779087 9.595040934 9.035032993 9.23646673 9.458158268 8.623069672 9.540526919 9.024821614 9.357768483 9.08146742 256036149 sigma_24 Stress Sigma factors Chitinophaga pinensis DSM 2588 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 8.024324349 8.026179492 8.14130971 7.379537161 7.35508723 7.721118425 7.786842742 7.491322167 8.300112595 7.612209811 7.425952426 7.580095409 224821288 pstA Stress Phosphate limitation Natrialba magadii ATCC 43099 8.046450961 8.040799628 7.274175338 7.318690147 7.571788821 7.41947091 7.301175689 7.732221081 7.418067563 7.562972673 7.834607997 218214332 ppk Phosphorus Phosphorus utilization Clostridium hylemonae DSM 15053 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 7.725404677 8.445663109 8.402742601 8.59547658 8.383594664 8.508627867 8.720558463 8.695995427 8.388259531 262096403 Tet Antibiotic resistance other Phytophthora infestans T30-4 superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora;species:Phytophthora infestans; 8.262641618 8.300240601 8.605090979 7.782359564 7.445903993 7.73793509 7.735950582 7.593470443 8.451925299 7.70359642 7.451966165 7.869710288 90329302 pilin virulence pilin Photobacterium profundum 3TCK superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 9.974198333 9.938792217 10.07793258 9.549269407 9.539907618 9.296590133 9.803927499 9.761668289 9.407416051 9.690671239 9.771323223 9.52567722 256361219 cda Carbon cycling Carbon degradation Starch Catenulispora acidiphila DSM 44928 9.49481136 9.656021066 9.322067412 9.140402928 9.17749345 9.161643959 9.388610866 9.224756661 9.431340487 9.322321589 9.6463292 9.466957564 119949946 AceB Carbon cycling Carbon degradation others Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 8.860313132 8.823826441 8.72399639 8.747915766 8.820475743 8.999178066 9.080282984 8.916049487 8.989351028 9.228183628 9.367975233 9.338602967 210150332 clpC Stress Protein stress Clostridium nexile DSM 1787 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium nexile; 8.168612161 8.225516231 8.224201763 8.281147451 7.888004102 7.870312227 7.827769227 8.107773051 8.175222547 8.079054388 8.157035713 7.967648948 77454825 alkH Organic Remediation Other Hydrocarbons Rhodococcus erythropolis PR4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 8.421737863 8.312860238 8.64691392 8.108702732 7.388691266 7.555753953 7.116594836 6.905087052 7.717545617 7.862724913 7.828672118 115250428 catB Organic Remediation Aromatics BTEX and related aromatics Clostridium difficile 630 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium difficile; 8.16228191 7.78570144 8.656310896 7.466806237 7.46092591 7.410586553 7.303718917 167046594 ara Carbon cycling Carbon degradation Hemicellulose Paenibacillus sp. HanTHS1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 9.211657049 8.964083804 9.114699479 8.650663924 8.688994132 8.591693244 8.499643376 8.860610793 8.532121779 8.771675309 8.667481165 9.021928265 209533029 CopA Metal Resistance Copper Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 9.402208051 9.358818418 9.412584176 8.904722138 8.910987567 8.720478977 8.682263053 8.790390476 8.715870211 8.873386665 8.78814395 9.115876564 20278813 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.676758697 8.328942333 8.721026935 8.153957242 8.120890263 8.186340571 8.254513429 8.135769766 8.249759325 7.958799036 8.19864664 8.098944608 238836756 xylanase Carbon cycling Carbon degradation Hemicellulose Sphingobacterium sp. TN19 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium; 8.211375342 8.479209454 8.311422985 7.727565274 7.848586177 8.557937344 8.939305755 8.256188468 8.737390138 8.486686273 8.51212021 8.512124976 121609874 ophC Organic Remediation Aromatics Aromatic carboxylic acid Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 8.793172657 8.631531106 8.683298829 7.998467486 8.037401856 8.506605695 8.656282072 8.273677484 8.545839555 8.387326881 8.442053006 8.546692211 118581331 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 8.695839739 9.056104492 8.791254238 8.639893649 8.758812199 8.629637937 8.668276716 9.125404359 8.716032718 9.14829491 8.801358385 8.686650983 221535460 sigma_70 Stress Sigma factors Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 8.320685523 8.181725622 8.401221596 8.251255171 8.391971552 7.841330916 8.502400141 8.30202775 8.385210955 8.627672125 7.926417614 94471327 narG Nitrogen Denitrification uncultured bacterium 8.382687157 8.168014917 7.881442888 7.869158147 7.839453939 8.067551655 7.540699041 7.604059961 7.887568954 7.988658596 21220991 cellobiase Carbon cycling Carbon degradation Cellulose Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 9.377271608 9.623064897 9.589765795 9.148339714 9.286492914 9.092212314 9.037642863 9.620936293 9.069244597 9.450270736 9.527415862 9.394006192 169832029 APS_AprB Sulphur adenylylsulfate reductase Candidatus Desulforudis audaxviator MP104C superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Candidatus Desulforudis;species:Candidatus Desulforudis audaxviator; 9.434412436 9.437314441 9.263992783 124267540 pbrT Metal Resistance Lead Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 8.170657542 8.287034532 8.15079122 7.607682014 7.208181277 7.798894514 7.900726008 7.545903817 7.479927156 7.46138717 7.603357548 86160543 amyA Carbon cycling Carbon degradation Starch Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 8.713791937 8.727755497 8.911102607 8.070632059 8.015071096 8.254948327 8.619242006 8.012371726 8.626891438 8.166538384 7.835911756 8.283685716 69141982 CODH Carbon cycling Carbon fixation Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 9.411429449 9.446974449 9.151706674 8.86993673 8.932514295 8.911095732 8.939316415 8.706783974 8.913000876 8.957677383 8.949762941 8.391850028 168704138 sigma_38 Stress Sigma factors Gemmata obscuriglobus UQM 2246 8.799753412 8.813821927 8.717967661 8.04026309 8.522012395 8.641820125 8.873180135 7.829385358 9.204362222 8.248958315 8.320529278 8.506038684 118590352 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 11.13774797 11.0039124 11.07236995 10.3202315 10.24542411 10.15601123 10.50451551 9.854087496 10.51968043 10.32440283 10.44142788 10.43020737 255260373 aclB Carbon cycling Carbon fixation Sideroxydans lithotrophicus ES-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Sideroxydans;species:Sideroxydans lithotrophicus; 8.870746027 8.638808815 8.693544833 8.547899846 8.352339797 8.535832062 8.64281897 8.545246988 8.855873912 8.575395039 8.766295709 8.404658275 86556210 phn Organic Remediation Herbicides related compound Synechococcus sp. JA-2-3B'a(2-13) superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 9.389972618 9.343411449 9.398563775 8.79013855 8.662698878 8.696459784 8.639725527 8.475745527 8.427929332 8.667189895 8.528298049 8.681569752 169848373 AceB Carbon cycling Carbon degradation others Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 9.280923016 9.350072891 8.639878934 9.128060666 9.074435083 8.787804782 72123407 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 9.700822583 9.933567318 9.839634928 9.115236078 8.779702906 9.050584693 9.097500178 8.892246175 8.82895797 8.999587684 8.954095236 9.235356258 83726424 nagK Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia solanacearum UW551 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 9.522609944 9.45967895 9.685890206 8.980535611 8.752039858 8.61637667 8.662489509 8.731908331 8.591409009 8.709032107 8.778224385 9.076087064 157373414 cytochrome Energy process Energy process Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 8.512795895 8.206210134 8.421124425 7.967111197 7.988474752 8.357439991 8.685725467 8.001948009 8.701704624 8.147663144 7.900907609 7.914396157 124271095 FTHFS Carbon cycling Acetogenesis uncultured bacterium superkingdom:Bacteria; 8.481218306 8.366497014 8.661455038 8.623559142 8.319473124 8.442305157 8.453335545 8.572742809 8.645693993 8.355720274 8.210715974 223690019 pstB Stress Phosphate limitation Desulfobacterium autotrophicum HRM2 8.71386003 8.586609064 8.914623676 8.020800393 7.93297947 8.011478925 7.677240071 7.494236946 8.318718424 7.705763213 7.918052903 8.040851569 210065746 BADH Organic Remediation Aromatics Other aromatics Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 8.274657916 8.112275398 8.411359978 7.706200635 7.744454683 7.802385261 7.469219692 7.772963462 8.177508655 7.98712389 7.758163277 7.58402434 148259995 SMR_antibiotics Antibiotic resistance transporter Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 9.171825018 9.039005881 8.879026191 9.334401934 9.245281887 8.973065206 9.265478035 9.216337691 9.059460193 9.063345564 8.949693633 8.906700474 229868078 mannanase Carbon cycling Carbon degradation Hemicellulose Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 8.980566638 8.844801976 9.217710627 9.318451126 8.477602516 8.333217711 7.517818084 7.696830235 8.226608757 8.198940364 8.281957865 33391293 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.158247426 9.196994709 9.205885931 9.122444091 9.115430895 8.773569181 9.142303477 9.366684557 9.118725178 9.229388383 9.102972424 9.135359127 119766102 pilin virulence pilin Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 7.401554482 7.488261958 6.951664096 7.512160231 7.976774338 7.731266355 7.874181202 7.677798698 224774777 pcc Carbon cycling Carbon fixation Mycobacterium bovis BCG str. Tokyo 172 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium bovis; 10.5889784 10.7246947 10.79382701 10.97994206 11.02731214 10.76408565 10.92277574 10.83328123 11.0926204 11.13119945 10.87196021 10.83230489 195972574 toxin virulence toxin Staphylococcus pseudintermedius superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus; 9.538302946 9.593970071 9.617084883 8.37297517 8.539985403 8.664983183 9.274533545 8.692374088 9.603442986 8.624077078 8.803394608 8.728177666 139478551 mer Metal Resistance Mercury uncultured soil bacterium superkingdom:Bacteria; 9.460744002 9.684668161 9.367831769 8.900041862 8.891699271 9.130223536 9.155283174 8.732129613 9.265726589 9.045467568 9.341727271 9.317049385 145903123 srt virulence surface protein Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 8.374615981 8.773326176 7.883868691 7.871044088 7.825498738 7.807339968 7.421715643 8.039301406 8.025511633 7.343867042 8.010835682 77026370 pcpE Organic Remediation Herbicides related compound Pimelobacter simplex superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Pimelobacter; 9.272080839 9.185964556 9.176122388 8.854728061 8.924113526 8.849317268 9.142102397 9.047518186 9.053637486 9.259602013 9.258032671 9.033747152 119184946 nagG Organic Remediation Aromatics Aromatic carboxylic acid Coccidioides immitis RS superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides immitis; 8.661969442 8.597542401 8.602905125 7.606038472 7.432559144 7.738981654 7.429535445 7.017051122 8.193954839 7.660092757 7.390363228 7.972146679 166086039 pstB Stress Phosphate limitation Microcystis aeruginosa NIES-843 9.100980464 9.028100457 9.143705717 8.430643852 8.511006427 8.507557189 8.153104718 8.031971232 8.380155827 8.357076134 8.492811926 8.708083912 146190000 pnbA Organic Remediation Aromatics Nitoaromatics Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.220297337 8.427992465 9.140004794 8.556386986 7.902018833 8.857258411 8.527602849 8.269525965 8.452152641 8.483006946 8.366060184 154489166 pulA Carbon cycling Carbon degradation Starch Bifidobacterium adolescentis L2-32 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium adolescentis; 8.438850371 8.154094164 8.366651083 7.945898821 8.258947821 8.16046257 8.040350139 8.542524248 8.308327678 8.233277919 8.049670833 8.162643444 91801657 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 7.893598017 8.125557596 7.450869005 7.319433421 7.242748434 7.495431041 7.784062278 7.381153848 7.396230963 7.404350572 25188165 narI Stress Oxygen limitation Selenomonas ruminantium superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Selenomonas; 8.370116874 8.191664445 8.316482315 7.765089673 7.67344566 7.495681515 7.394450073 7.564297302 7.823548095 7.787091471 7.758400933 7.892907525 157407994 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 8.374670624 9.006874843 8.502855337 7.859545126 8.831785098 9.039429395 8.674164388 8.679394272 8.615742647 8.546334401 8.861561177 193089793 sigma_32 Stress Sigma factors Chloroherpeton thalassium ATCC 35110 9.189655778 9.210414189 9.234221461 8.857451455 8.690120014 8.574065309 120563803 dsrB Sulphur sulfite reductase Desulfovibrio vulgaris subsp. vulgaris DP4 8.672786223 8.848917665 8.567791163 8.10700842 8.701732231 8.302555898 8.358661896 8.64203724 8.116931224 8.815385267 8.210139122 198265890 nagG Organic Remediation Aromatics Aromatic carboxylic acid Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 8.065224255 8.260515373 8.291752949 8.00291104 8.127051254 7.994310976 8.249518264 8.287986937 8.058814374 8.249122811 7.794849767 149821972 sigma_24 Stress Sigma factors Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 8.659818688 8.488936748 8.168465135 8.140233176 8.779708872 8.353137181 8.618177469 8.360229266 8.704972901 225194113 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9.957601172 9.938859067 10.0609468 9.368142062 8.851045111 9.221973903 9.138665153 9.081464935 8.729438154 9.176183608 9.110409477 9.549268397 253688577 type_III_secretion virulence secretion Pectobacterium carotovorum subsp. carotovorum PC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 8.464202904 8.166384961 7.809217908 7.697691935 7.546221512 7.485760669 7.817183667 7.912783378 7.726853717 7.761357404 7.888791332 91684618 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.854176487 10.00474725 9.802774914 9.819187081 9.975016412 9.877330946 10.03168966 10.20598787 10.16841309 10.28921922 10.25955473 10.11305817 89512770 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.510186066 8.404577993 8.406911654 8.217510437 8.231875183 8.227301798 8.229086896 8.080270943 8.447391223 8.273396193 8.273910301 8.296919479 158447948 ChrA Metal Resistance Chromium Coprococcus eutactus ATCC 27759 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Coprococcus;species:Coprococcus eutactus; 8.732828582 8.896068786 8.005964256 8.210936312 7.69416533 7.635927227 7.30233458 8.114813176 7.584323147 8.002609667 154350642 proV Stress Osmotic stress Bacillus amyloliquefaciens FZB42 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 8.29654445 7.990223365 7.249026505 7.066293277 7.000394146 6.838154499 67985836 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 10.52095113 10.37105604 10.26888072 9.546839493 9.557229502 9.266933857 9.97254177 9.598724056 9.998096663 9.83753632 9.745762709 9.809445039 186466730 sigma_24 Stress Sigma factors Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 8.600406933 8.49125702 8.532788946 8.413106808 8.737028245 8.385069671 8.803746411 8.55490588 8.54111908 8.744413126 9.202377003 8.84430643 89203127 trzN Organic Remediation Herbicides related compound Bacillus cereus subsp. cytotoxis NVH 391-98 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cytotoxicus; 9.004363807 8.903220014 9.070669977 8.402536848 8.459465103 8.600759806 8.13616205 7.774239672 8.14763209 7.989458535 8.643347534 258524906 ahpC Stress Oxygen stress Desulfurivibrio alkaliphilus AHT2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfurivibrio;species:Desulfurivibrio alkaliphilus; 8.968391938 8.643148969 8.830272006 8.744175391 8.609503253 8.674086326 8.361035947 8.95829493 8.318431011 8.806577089 9.03282178 8.717882768 77384801 exaA Organic Remediation Chlorinated solvents Pseudomonas fluorescens Pf0-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.507866984 8.893203575 8.911364055 9.246577809 9.189964147 8.728654223 8.972330455 9.421003904 8.991113187 9.278477932 8.658413903 8.935066076 255007657 mannanase Carbon cycling Carbon degradation Hemicellulose Bacteroides fragilis 3_1_12 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 9.025154597 8.927230118 9.137616139 8.181235701 8.094829078 8.236182761 8.073305841 7.971524671 7.490865793 7.91808095 8.044878843 8.402145135 161384936 phn Organic Remediation Herbicides related compound Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 8.553167877 8.309456214 8.486750815 8.788829502 8.718893316 8.741102707 8.172568149 8.693152518 8.457001968 8.567005819 8.624249059 8.67303455 77458548 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens PfO-1 9.258987056 9.267979644 9.018302256 8.435650797 8.676752601 8.572271369 8.731053529 9.072649431 8.685159901 8.850374554 8.949377355 8.959625464 196256671 glnA Stress Nitrogen limitation Cyanothece sp. PCC 7822 9.159485997 9.035624035 9.294763334 8.565884572 8.515982112 8.266564098 8.426113431 8.153805418 8.484512872 8.411927443 8.404857725 8.679163165 256578693 Tet Antibiotic resistance other Desulfomicrobium baculatum DSM 4028 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfomicrobiaceae;genus:Desulfomicrobium;species:Desulfomicrobium baculatum; 9.181863202 8.949397467 8.396524735 8.449728597 7.986523825 8.557511653 8.728028643 8.301161991 209885557 CopA Metal Resistance Copper Oligotropha carboxidovorans OM5 8.932423381 8.662265775 8.639178184 8.149386858 7.980826827 7.887830767 8.08519163 7.904865833 8.130276224 8.067525004 7.776713357 8.022441452 120555038 pcc Carbon cycling Carbon fixation Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 8.690755082 9.280564019 9.360109866 9.083733302 9.650403122 9.76176098 9.144330431 9.993010923 9.172135418 9.237526994 9.197619411 121605481 ArsC Metal Resistance Arsenic Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 10.2122274 10.15266868 10.12471009 9.642881985 9.578766698 9.410195303 10.08467283 9.618550026 10.107947 9.500185415 9.479062965 9.41393685 199594001 narG Nitrogen Denitrification uncultured bacterium 8.112406517 8.012988212 7.822276534 7.894783366 7.870257085 7.756753347 8.034675444 7.871658708 7.974268148 7.609252761 8.014432838 114335583 dmsA Organic Remediation Others Shewanella frigidimarina NCIMB 400 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella frigidimarina; 8.648240317 8.432716355 8.610906693 8.157326145 7.901054294 7.992304932 7.514156001 7.384080344 8.439452203 7.468710584 7.560166256 7.996966267 148498941 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.754061043 8.380607653 8.787716914 8.817829578 8.491000109 8.202733546 8.285758517 8.635992742 8.230317538 8.5834848 8.400935984 8.697144552 256583987 srt virulence surface protein Saccharomonospora viridis DSM 43017 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora viridis; 8.913394956 9.023570407 9.052202098 8.419208356 8.458037928 8.463122734 8.385406156 7.940198343 8.331832108 8.237563937 8.145275152 8.556592447 148502274 nahA Organic Remediation Aromatics Polycyclic aromatics Sphingomonas wittichii RW1 8.941240485 9.126072699 8.645842417 8.389776517 8.25105495 8.146167933 8.020497196 8.198503905 8.414530807 8.168326761 8.044985304 8.315712017 15218839 bclA Organic Remediation Aromatics Aromatic carboxylic acid Arabidopsis thaliana superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Streptophyta;order:Brassicales;family:Brassicaceae;genus:Arabidopsis; 8.268115937 8.334721483 8.328535829 8.137482854 7.842118466 8.115000681 8.26864613 8.506139282 7.968584429 7.976787398 7.770182104 226318393 sigma_70 Stress Sigma factors Deinococcus deserti VCD115 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 9.034809202 9.045314547 9.055780585 8.803165469 8.830747293 8.947183785 9.030261395 9.372837947 8.880866815 9.49183602 9.054162556 8.985098915 158315409 nagG Organic Remediation Aromatics Aromatic carboxylic acid Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.958705759 9.316504222 8.866650151 8.747253606 8.712313719 8.958792665 9.397734718 8.904897798 8.889811736 8.729992697 8.805278225 8.526263328 148570976 TerD Metal Resistance Tellurium Psychrobacter sp. PRwf-1 8.014139466 8.226853992 8.265542799 7.319294189 7.502343196 7.285530921 6.94751045 7.907832437 6.903689391 7.338698984 72163329 proV Stress Osmotic stress Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 8.626865643 8.78809333 8.679115432 8.139515239 8.255451993 8.476414618 8.787831618 8.265301315 8.768845143 8.396929229 8.429626314 8.391680074 154253120 ChrA Metal Resistance Chromium Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 9.355794989 9.358827156 9.458610101 9.156025088 9.112882242 9.049530668 9.395393627 9.346331903 8.911947166 9.36409974 9.201038103 9.132338406 77700893 CODH Carbon cycling Carbon fixation Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.276206364 8.435784883 8.61833042 8.802868423 7.840355458 8.347370653 8.792021948 8.413164711 8.468567968 8.283153788 8.546230649 8.232099622 255031890 nirS Nitrogen Denitrification uncultured bacterium 8.606180534 8.643357462 8.8652241 8.282782511 8.159795292 7.965540486 7.938070008 7.980272087 8.201909292 8.094416989 7.951889514 7.913255464 171323414 pcc Carbon cycling Carbon fixation Geobacillus sp. WCH70 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.41718458 8.034961236 7.537797739 7.721485613 7.689878793 8.042965416 7.969846853 7.825476983 8.024595607 7.918032646 7.925877217 51855717 MFS_antibiotic Antibiotic resistance transporter Symbiobacterium thermophilum IAM 14863 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVIII. Incertae Sedis;genus:Symbiobacterium;species:Symbiobacterium thermophilum; 9.302755298 9.323069103 9.316533873 8.803444063 8.710950966 8.663222369 9.034180835 8.638378496 9.164196006 8.617328446 8.679508054 9.003791655 14026595 rubisco Carbon cycling Carbon fixation Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 10.00009524 9.987170344 9.981183495 9.417019882 9.75001184 10.02970695 10.55843298 9.549555928 10.71383858 9.901372483 9.891983442 9.85847446 8246805 TerD Metal Resistance Tellurium Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 9.676337371 9.484880803 9.741837371 9.258789518 9.424950854 9.340830159 9.286674695 9.229050582 9.263466417 9.280058198 9.541269047 9.420692756 254486512 pstA Stress Phosphate limitation Roseobacter sp. GAI101 8.415464088 8.448978826 8.272879111 8.331913364 8.273966951 8.244410602 8.387842896 8.569729098 8.653952868 8.462156685 8.519905966 209401648 narG Nitrogen Denitrification uncultured bacterium 9.882622937 9.958321913 9.943533526 9.164006499 9.096935946 9.081790275 9.19757225 8.921807863 9.191404888 9.101912701 9.170996786 9.373544415 189458602 APS_AprA Sulphur adenylylsulfate reductase uncultured proteobacterium superkingdom:Bacteria;phylum:Proteobacteria; 8.294553822 8.328746569 8.55029956 7.580920241 7.691126529 8.399739551 8.497734508 8.157601804 8.727013404 8.191883118 8.370396131 8.295885899 84043045 pcaG Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 8.689539683 9.182465615 8.938134289 8.516223332 8.592255936 8.91706305 9.296781836 8.661881924 8.982614279 8.570425533 8.760917827 8.711937018 152987507 ArsC Metal Resistance Arsenic Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 9.262811481 8.816254815 9.032416407 8.124270216 8.174150327 8.118977853 8.022927499 8.274187857 8.214069615 8.120512576 8.014446809 8.131046983 148261431 UHGNAS_EPS Bioleaching EPS Acidiphilium cryptum JF-5 8.869725377 8.994589042 9.212921003 8.418548644 8.888245602 9.098800151 8.863273015 9.015557728 9.009503162 8.764778919 9.040088994 8.801890288 110679683 fnr Stress Oxygen stress Roseobacter denitrificans OCh 114 8.664091752 8.690551163 8.697003586 8.146017049 8.389669232 7.969473107 7.880627136 8.388823331 8.148721174 8.181803728 8.268788385 56679094 nagG Organic Remediation Aromatics Aromatic carboxylic acid Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 9.655979055 9.250761018 9.094520272 9.185732702 9.242008433 8.944337421 9.220091289 9.154749317 9.032825432 8.994754216 9.050791905 8.944211771 160362624 ArsC Metal Resistance Arsenic Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.624815212 8.577624137 8.964281726 8.658768549 8.350653494 8.811200366 8.648380226 8.70805899 8.408129176 8.08124561 8.296442745 197210219 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.405051985 7.916489936 7.537178457 7.354906897 7.381846775 7.35437781 7.671836405 7.684365884 7.697346353 7.225285966 7.555559273 156867617 gyrB other category gyrB Clostridium leptum DSM 753 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 9.17796033 9.267328861 9.285750074 8.576714736 8.469294616 8.730071133 9.127382644 8.925988396 9.140594467 8.809648187 8.562906013 8.745947866 269128937 sigma_24 Stress Sigma factors Thermomonospora curvata DSM 43183 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora;species:Thermomonospora curvata; 9.371441629 9.316291547 9.34943566 8.706248113 8.62698828 8.587302912 8.754313483 8.559394327 9.022839785 8.38503693 8.487212013 8.647626802 218677536 nhh Organic Remediation Aromatics Nitoaromatics Rhizobium etli CIAT 894 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.431161437 8.641169287 8.831688501 7.570021225 7.735926305 7.721234379 7.695122628 8.373686342 8.261338975 8.001893017 8.045510306 8.175499263 190576266 silC Metal Resistance Silver Stenotrophomonas maltophilia K279a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 9.401093007 9.121576864 9.259018073 9.359804376 9.25122623 8.777845961 9.429425769 9.813549728 9.689711119 9.384589757 9.250984131 9.464740763 221635786 mer Metal Resistance Mercury Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 9.127078447 9.127235266 8.914895285 8.415709673 8.591321108 8.497607639 8.474049065 8.208108469 8.638770529 8.505118676 8.537100602 8.507398926 4512379 alkJ Organic Remediation Other Hydrocarbons Bacillus halodurans superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 8.488693006 8.286830389 8.603892753 8.049952002 8.198581334 8.20561124 7.977279929 8.115433621 8.178957443 197782332 xylC Organic Remediation Aromatics BTEX and related aromatics Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 8.621491609 8.732342892 8.394445194 8.605821714 8.791723958 8.880611102 8.417021184 8.750953684 8.72665469 8.47669925 8.81421861 8.60042497 89058513 amoA Nitrogen Nitrification superkingdom:Bacteria; 9.217179099 9.239366628 9.25472261 8.759853072 8.704289652 8.416142334 8.775131886 8.750133342 8.714684773 8.574389644 8.740135075 82703156 fnr Stress Oxygen stress Nitrosospira multiformis ATCC 25196 9.082243245 9.018160323 9.307767961 8.570153966 8.523213921 8.52736927 8.191504916 8.407420371 8.388706168 8.350183828 8.339529586 8.695578068 78514147 nmoA Organic Remediation Aromatics Nitoaromatics Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.77453469 9.13243098 9.069383817 9.426876844 9.489751084 9.277809109 9.172034046 9.655298958 9.017066095 9.497549795 9.234268937 9.395906752 154247259 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 10.05450353 10.02627694 9.847437065 9.772447699 10.07895255 10.35644442 10.09927574 10.34209821 10.07415104 10.14782471 10.37681319 10.16199019 227197034 pstC Stress Phosphate limitation Corynebacterium striatum ATCC 6940 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium striatum; 8.370372982 8.067307617 7.759846351 7.143756116 7.247198469 6.802540397 7.713465293 7.456382887 7.978463551 3378273 BADH Organic Remediation Aromatics Other aromatics Novosphingobium aromaticivorans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 8.994468054 8.996808235 9.251485899 8.219782097 8.258092942 8.294917002 8.210153561 8.423494402 8.613559419 8.612866047 8.811097857 218564116 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 8.274164716 8.261815864 8.430524584 7.598618836 7.537708249 7.797668513 8.00113114 7.555688501 8.276297234 7.74059841 7.794351134 7.604232426 148750449 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.673387507 8.707250094 8.746141488 8.537526792 8.557170473 8.730239775 8.326494926 8.384637974 8.457338912 8.27923149 8.168473513 8.256194555 119414795 BpH Organic Remediation Aromatics Aromatic carboxylic acid Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 8.701693358 8.24690894 8.449446195 7.960729043 7.658341519 8.227795201 8.163808455 8.399928099 7.830770965 7.922600232 7.572356622 162449574 pulA Carbon cycling Carbon degradation Starch Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 8.886008421 9.453144163 9.260223459 8.651097651 8.279296846 8.793988183 9.045832906 8.591908701 8.821374501 8.696927462 8.606347306 8.672356836 89075780 B_lactamase_A Antibiotic resistance Beta-lactamases Photobacterium sp. SKA34 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium; 9.005212329 8.839265086 9.037807785 8.376555616 8.151210534 8.294470503 8.088280529 7.935674123 8.280131286 8.140763773 7.830708483 8.562042035 134094128 ChrA Metal Resistance Chromium Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 9.203750586 9.015778808 9.105262315 8.540398551 8.526795003 8.506247835 8.554049025 8.457672608 8.333184116 8.371083923 8.331630943 8.576110068 159045061 fnr Stress Oxygen stress Dinoroseobacter shibae DFL 12 9.99087004 10.09700276 10.19760017 9.621629943 9.655616917 9.515050691 9.497280195 9.65691548 9.38223922 9.741144104 9.745983499 9.691590437 114538575 nagK Organic Remediation Aromatics Aromatic carboxylic acid Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 8.172186077 7.796899769 8.206936166 7.548893404 7.509082094 7.817003773 7.598815334 7.211813732 7.33860577 7.599130444 7.456370978 192290149 nitA Organic Remediation Aromatics Other aromatics Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.339977667 8.270984616 7.739870089 8.019907882 7.830524612 8.150757304 7.979758511 8.598222762 7.789948192 7.767333751 121553331 ureC Nitrogen Ammonification Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 9.433746729 9.396173977 9.397794653 8.812469851 8.840512546 9.028337827 9.502199121 9.044164727 9.396830797 8.951164679 8.991524571 8.860576182 415256 mauAB Organic Remediation Herbicides related compound superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 9.332712375 9.423877064 9.35818693 8.878947477 8.617022887 9.076197546 9.274226913 8.766047524 9.212274685 9.045023494 9.175403311 8.769215387 229734790 B_lactamase_C Antibiotic resistance Beta-lactamases Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 8.620495217 8.324085815 8.503716924 7.77659733 7.816943712 8.151370225 7.53855736 7.686381776 8.042736823 7.646445877 7.851447684 7.716126113 146194434 SilA Metal Resistance Silver Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.078363486 8.053573146 6.993012806 6.950569885 7.360239727 7.548037425 6.942995462 7.734344702 7.188025026 7.225957996 7.112793321 91720572 alkB Organic Remediation Other Hydrocarbons Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 8.411645708 8.613021871 7.935551048 8.323257041 8.47405722 8.619321922 8.414100712 8.541505706 8.016718435 8.005897187 8.103497901 239908058 katA Stress Oxygen stress Desulfovibrio magneticus RS-1 8.357796046 7.294649017 7.341945558 7.97458838 7.701605726 222081396 nmoA Organic Remediation Aromatics Nitoaromatics Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.219106636 8.468612151 8.4905705 8.690030579 8.761043295 8.541071314 8.567942766 8.658158194 8.537586286 8.649974368 8.600295837 8.175632966 198262601 fnr Stress Oxygen stress gamma proteobacterium HTCC5015 8.322989256 8.119471666 8.202922974 7.467904349 7.625768028 7.677751645 7.313406248 7.43716342 7.813794691 7.288833603 7.503894315 7.754616981 148240920 SilA Metal Resistance Silver Bradyrhizobium sp. BTAi1 8.244679108 8.537318158 7.904623705 7.889276123 7.912530005 8.092868419 7.72559367 8.13202231 8.109342925 8.028529678 8.203526864 52784176 TerZ Metal Resistance Tellurium Bacillus licheniformis ATCC 14580 9.207237534 9.204580175 9.281510547 8.749542553 8.776101052 8.76864612 9.16185306 8.833715225 8.948323398 8.901515787 9.286753028 9.022133619 158334138 CopA Metal Resistance Copper Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;genus:Acaryochloris;species:Acaryochloris marina; 8.550399233 8.611129207 8.519173982 8.239631176 8.168708058 8.528740017 8.692118838 8.320163068 8.32777818 8.303237402 8.647321554 8.657216797 154158242 pstA Stress Phosphate limitation Xanthobacter autotrophicus Py2 8.345092506 8.610637039 8.520704164 7.99305672 8.015478463 8.233931407 8.32327912 8.040046455 8.824997043 8.102357121 8.019807417 8.118822252 221535978 ChrA Metal Resistance Chromium Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 8.532178859 8.719074915 8.947780721 8.154535039 8.058089577 7.871178024 8.276865882 7.920190758 8.554683521 7.880267375 7.936004063 8.188061524 159181008 sigma_24 Stress Sigma factors alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 10.27641539 10.03340314 9.85979137 10.25236588 9.864323767 9.229177939 10.0437273 10.08292553 10.07874469 9.856996346 9.703215864 9.664754876 75675229 fnr Stress Oxygen stress Nitrobacter winogradskyi Nb-255 8.516381892 8.767267639 8.469638978 8.152066586 8.215311619 8.521471663 8.851308279 8.341455771 8.903961491 8.22171841 8.194722059 8.013671821 151589290 ChrA Metal Resistance Chromium Methylobacterium extorquens PA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 8.263730756 8.317853962 7.941243757 8.401997164 8.277035049 7.966056551 8.548820999 8.08500872 8.369820071 8.425971363 8.392311325 46400773 grpE Stress Heat shock Candidatus Protochlamydia amoebophila UWE25 superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Parachlamydiaceae;genus:Candidatus Protochlamydia;species:Candidatus Protochlamydia amoebophila; 8.443484803 8.44124523 8.606359439 7.566955377 7.493364624 7.77530409 7.340507989 7.23531086 8.12198639 7.511539294 7.58734096 7.977580256 229588129 ureC Nitrogen Ammonification Pseudomonas fluorescens SBW25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.090756614 7.90040465 7.416316967 7.920207401 7.924356399 8.167632633 7.863228481 7.88322414 7.649981293 145557717 ChrA Metal Resistance Chromium Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 9.388050939 9.630569482 9.65907674 9.483775842 9.757285178 9.59109044 9.687375525 10.12790872 9.71721501 9.833962234 9.703211786 9.928724588 76796090 ppx Phosphorus Phosphorus utilization Thermoanaerobacter ethanolicus ATCC 33223 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Thermoanaerobacter;species:Thermoanaerobacter pseudethanolicus; 9.293727262 9.257799441 9.323516012 8.657163702 8.532760354 8.525726671 8.507608316 8.375311094 8.369296618 8.484357073 8.622929941 8.851875044 111221786 AceA Carbon cycling Carbon degradation others Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 8.358525375 8.732048618 8.717008881 8.829101666 8.859462062 8.669909815 8.697229305 9.17856886 8.731241076 9.133819939 8.808521145 9.017006211 28566177 gyrB other category gyrB Entomoplasma somnilux superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Entomoplasmatales;family:Entomoplasmataceae;genus:Entomoplasma; 9.095017366 8.919655151 9.173074469 8.453472797 8.104837528 8.376847487 8.22289827 7.87586744 8.289693778 8.228200668 8.192797071 8.412678177 168699430 arsM Metal Resistance Arsenic Gemmata obscuriglobus UQM 2246 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata;species:Gemmata obscuriglobus; 8.369210981 8.49061888 8.225765367 8.135174791 8.459970497 8.181754299 8.007427362 8.478147948 8.213408334 8.24537425 8.647390559 167665953 ppk Phosphorus Phosphorus utilization Anaerotruncus colihominis DSM 17241 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Anaerotruncus;species:Anaerotruncus colihominis; 8.202794749 7.919896785 7.627572672 7.542600117 7.30391305 7.587891869 7.530298394 7.514570271 7.467095408 7.316435685 89082616 CopA Metal Resistance Copper Oceanospirillum sp. MED92 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Neptuniibacter; 8.601590437 8.613015741 8.959659005 8.063550724 8.240272958 8.092462868 7.978177428 8.04140548 7.728162282 7.94342947 7.926669199 8.521019608 71064787 sigma_32 Stress Sigma factors Psychrobacter arcticus 273-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter arcticus; 8.699458682 8.648685561 8.680997503 8.069590884 7.936112868 8.229049592 8.243384531 7.503811268 8.669061614 8.122498255 8.03905921 8.165976009 55229152 CadA Metal Resistance Cadmium Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 8.868831446 8.819316329 8.35552297 8.401644928 8.095168333 8.293112542 8.686817501 8.463599358 8.191860023 8.211386833 8.037091347 170693810 tfdA Organic Remediation Aromatics Chlorinated aromatics Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 9.550204769 9.293828328 9.27005947 8.808037546 8.975806299 8.629122951 9.00828626 8.698822821 9.101020285 9.056686525 9.099096269 9.098847733 10799845 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.690927655 9.003149135 8.630043222 8.5573458 8.608401256 8.449296194 8.5205581 8.742066285 8.437091958 8.711090496 8.567071419 76057545 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 10.89850962 10.9528574 10.86575095 10.63339382 10.47038423 10.48624082 10.93593188 10.65258853 10.85783459 10.47508754 10.59540911 10.63382562 118049304 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 9.582964103 9.576292469 9.507062605 8.726570189 8.997114852 9.393165737 9.784826743 9.391265362 9.577462176 9.236285957 9.249288316 9.253998979 254386884 amyA Carbon cycling Carbon degradation Starch Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 10.02992709 10.07411794 10.30450031 9.539489232 9.226831505 9.452966954 9.460431639 9.26612228 9.368360817 9.562167935 9.553373212 9.824978462 121530929 Catechol Organic Remediation Aromatics Other aromatics Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.408833964 8.592899068 8.289457394 8.369137439 8.683386409 8.022468292 8.264764745 8.453770137 8.315004609 86572641 ppx Phosphorus Phosphorus utilization Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.638091199 8.560625389 8.325241277 8.027899027 8.18032335 8.307555767 8.443032922 7.592140591 8.369236456 7.731318639 8.072955751 7.887830938 23867889 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 8.119823289 8.654109157 8.160890832 7.354641992 7.413260134 7.455516241 7.141299823 7.107007979 7.741147023 7.484468461 7.544238333 7.394225266 177670512 AceA Carbon cycling Carbon degradation others Micrococcus luteus NCTC 2665 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus;species:Micrococcus luteus; 8.181363604 8.655122085 7.935920145 8.033265811 8.497634473 8.786911451 8.592561382 8.449725698 8.150328454 8.45131313 8.624396544 226331042 proV Stress Osmotic stress Proteus penneri ATCC 35198 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus penneri; 9.034696245 9.025620619 9.065448596 8.41950016 8.226253807 8.375706872 8.045232267 7.980473568 8.195205174 8.048417731 8.004460162 8.464683632 190697718 ChrA Metal Resistance Chromium Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.873840414 8.844349057 8.705718086 8.740173229 8.680991826 8.415246295 8.587052057 8.380197312 8.608965103 8.279288912 8.445288748 8.30158784 108466974 mhpA Organic Remediation Aromatics Aromatic carboxylic acid Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 8.2884935 8.893028786 8.953865432 9.116365928 8.804640674 8.554517132 9.129910893 9.213541276 8.268571905 110821364 pstC Stress Phosphate limitation Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.903882688 8.394109424 8.535651828 9.286491227 9.267504227 8.918316861 9.032556435 9.10412512 8.672936376 8.886836609 8.774298366 8.509169553 260432808 napA Nitrogen Dissimilatory N reduction Silicibacter lacuscaerulensis ITI-1157 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria lacuscaerulensis; 9.10469932 9.226661699 8.782390495 9.396704016 9.042515238 9.596291261 9.427931686 9.396473693 9.290549427 9.405662905 9.218161179 119857524 proO Organic Remediation Aromatics Other aromatics Pseudomonas putida W619 8.342688773 8.503325601 8.280841418 8.518127268 8.761695902 8.55723584 9.203066221 8.840628541 8.51681235 8.504014648 8.813338586 8.59652969 158425877 sigma_32 Stress Sigma factors Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 9.076564209 8.965851959 8.666785992 7.710416427 7.833416554 8.095814447 8.480488947 7.745255933 8.546866101 8.488345628 8.150272234 8.318369021 229491873 katE Stress Oxygen stress Rhodococcus erythropolis SK121 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 8.478330423 8.179492971 8.201012218 8.039280577 8.263088865 7.717903327 7.998558742 8.567550454 8.4564979 8.433971085 8.442801198 8.111521423 113869656 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 9.715939382 9.423389399 9.353300804 9.156267325 8.894131501 9.395635261 9.110326279 9.446391794 8.840137811 8.839658027 8.798886852 170719681 cytochrome Energy process Energy process Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 9.421714476 9.485006597 9.362379915 9.143038041 9.309103745 9.154105156 8.958270014 9.484823053 9.213917907 9.102937295 9.220292623 9.286083389 2338754 fnr Stress Oxygen stress Synechococcus sp. WH 7803 10.04843972 10.38940578 10.27266457 9.419198058 10.41753174 10.46990462 10.35722491 10.33009365 10.62104591 10.37311421 10.68788175 76056963 narG Nitrogen Denitrification uncultured bacterium 8.831927793 8.6773378 8.899716249 8.351050009 8.458410268 8.189868583 8.557742782 8.649707195 8.482056788 82410595 amyA Carbon cycling Carbon degradation Starch Nitrosospira multiformis ATCC 25196 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira;species:Nitrosospira multiformis; 8.845168077 8.958160794 9.030566737 8.604620887 8.335789183 8.286313915 8.351804665 8.257226982 8.585304165 8.246312457 8.267607712 8.625827354 163782051 grpE Stress Heat shock Hydrogenivirga sp. 128-5-R1-1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenivirga; 8.619262596 8.229168214 8.699144643 7.741629116 7.905090677 7.917869033 7.626957951 8.050678241 7.548600851 7.979187507 8.109904514 7.661768208 56312785 ebdABC Organic Remediation Aromatics BTEX and related aromatics Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 9.281868008 8.506253547 8.345661194 8.842042939 8.453392839 8.261957865 8.955040337 8.737801193 9.086677956 8.394442989 8.493106031 8.260537647 68536179 oxyR Stress Oxygen stress Corynebacterium jeikeium K411 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 8.219574582 8.082094749 8.270020739 8.335719279 8.289095273 7.818354461 7.810691599 8.420173267 8.192163608 8.27253723 8.087164242 8.343765589 167070013 SMR_antibiotics Antibiotic resistance transporter Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.033536075 7.986749683 8.216865743 7.257872105 7.560505252 7.840359654 7.309745801 7.934518902 7.623376525 8.04531708 8.1886609 7.536327668 190892097 nagL Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 9.146715197 8.933470082 9.200681086 8.05063849 8.082514315 8.033241795 8.407321499 7.740601034 8.548698589 8.161232246 8.1563943 7.98170786 133948848 Catechol Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 8.467710004 8.414584167 8.325180828 7.916109972 8.07388452 7.863431028 8.180279067 8.298197392 8.40509239 8.081799501 8.082737061 162952411 AceB Carbon cycling Carbon degradation others Renibacterium salmoninarum ATCC 33209 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Renibacterium;species:Renibacterium salmoninarum; 8.374634212 8.597743017 8.207863922 8.567981093 8.887506217 9.484495374 9.072338271 9.344741028 8.855868384 8.693351241 8.719267661 262207697 pilin virulence pilin Comamonas testosteroni CNB-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.376889751 8.113803737 8.387056585 8.252278652 7.993105859 8.20209245 8.158253546 8.140321575 7.985385494 8.004486173 7.673555277 170655879 fnr Stress Oxygen stress Methylobacterium radiotolerans JCM 2831 8.587442232 8.871566501 8.938085545 7.948861274 8.185068578 8.452797638 8.876981067 8.049956318 8.765598956 8.015294551 7.640100254 8.133473843 228470828 obgE Stress Radiation stress Porphyromonas uenonis 60-3 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas;species:Porphyromonas uenonis; 8.080931628 8.260026141 8.255789985 8.121606376 7.934442397 8.120620515 8.764176199 8.396926407 8.382038196 8.032898561 8.369338259 110679869 pstS Stress Phosphate limitation Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 9.399532464 9.186251842 9.405744442 8.57595287 8.601864828 8.576530453 8.57164241 8.330519974 8.682867039 8.466232903 8.379572405 8.772180357 32476773 Mex Antibiotic resistance transporter Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 9.280393142 9.284693544 9.265502967 8.720880448 8.929526604 8.767402261 8.978524618 9.034115245 8.500985314 8.720233708 8.864827432 257458260 amyA Carbon cycling Carbon degradation Starch Treponema vincentii ATCC 35580 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema vincentii; 7.804614032 8.055745173 8.340457363 7.858917935 7.533982408 7.263487054 6.889340117 7.481815548 7.838703468 7.616518039 7.283777259 7.471781497 256007650 sigma_38 Stress Sigma factors Acidimicrobium ferrooxidans DSM 10331 8.852170772 9.283406371 8.274950738 7.990856637 8.209227831 8.177749329 8.117630679 8.203132776 8.07574489 7.996300259 8.171291577 86359309 ZntA Metal Resistance Zinc Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 9.704733434 9.56022239 9.815097517 9.215452542 9.235889857 9.115442989 9.138537084 9.054406576 9.085348153 9.237162074 9.135303485 9.385187694 169117843 mer Metal Resistance Mercury uncultured organism 8.906114056 8.8310771 9.002184564 8.321272849 8.419124486 8.213840839 8.138156153 7.849793807 8.340497326 7.980101211 7.922219051 8.374359368 145604653 linB Organic Remediation Pesticides related compound Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 9.254328465 9.475644955 9.498917717 9.193437111 9.119821997 8.843900561 8.78628098 9.060546137 8.90127843 8.889296787 8.659072573 9.164552735 44243695 catechol_B Organic Remediation Aromatics Other aromatics Pseudomonas sp. IA1YICDA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 9.355760853 9.259505116 8.398654731 8.596365521 8.957109529 8.845025226 8.917695916 8.471825181 8.545431614 8.818475261 1395141 bphA Organic Remediation Aromatics Polycyclic aromatics Acinetobacter sp. YAA 8.258825438 8.346903074 8.389864595 8.192375772 8.042118766 7.996471464 8.244697051 8.514790134 8.008947042 7.764730282 8.220776498 109455004 alkJ Organic Remediation Other Hydrocarbons Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 8.114936022 7.809305242 8.411112351 7.876716126 7.792358483 7.793567074 7.624164939 7.638270775 7.710637489 7.765049555 7.655404858 7.876160754 158331393 bphC Organic Remediation Aromatics Polycyclic aromatics Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 8.957339031 8.710167891 8.570008071 9.150952329 8.796851228 8.702742218 8.954982051 9.327436271 9.435096866 8.992650166 8.499072021 9.035138111 91787199 hrcA Stress Heat shock Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 8.437508875 8.376665193 8.662015466 8.264170207 8.102106305 8.039424747 8.022807583 8.366580989 8.241363852 8.583974503 56475813 bco Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 8.639740991 8.607209602 8.687642227 8.425000536 8.437279637 8.194977491 8.541788659 8.296304255 8.654251165 8.347160497 8.463883329 8.35861504 10580059 pstB Stress Phosphate limitation Halobacterium sp. NRC-1 8.745099178 8.550860745 8.524462095 8.553102884 8.748665585 8.570611715 8.290826747 8.851903183 8.431820287 8.428622072 8.588135813 8.523426822 186473982 MFS_antibiotic Antibiotic resistance transporter Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 9.032467949 8.94659115 9.324101491 9.014426961 8.768914164 8.516342101 8.252449127 8.471266694 8.457883409 8.738474019 8.664376157 15840076 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium tuberculosis CDC1551 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 8.713331276 8.429372875 8.725832757 8.523089383 8.465553417 8.478638611 8.135231002 8.664454692 8.10121199 8.684184638 8.662784684 8.862842278 94471105 narG Nitrogen Denitrification uncultured bacterium 8.149370537 8.113654555 7.708698519 8.136909972 8.049531394 8.1137523 8.221105582 8.140995591 8.100894325 220933152 amyA Carbon cycling Carbon degradation Starch Halothermothrix orenii H 168 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Halanaerobiales;family:Halanaerobiaceae;genus:Halothermothrix;species:Halothermothrix orenii; 8.167066991 8.09893757 8.447702982 7.741405561 7.868347161 7.554459506 7.332006368 7.82727857 189460149 fnr Stress Oxygen stress Bacteroides coprocola DSM 17136 6.993539544 6.934252868 119378097 pimF Organic Remediation Aromatics Aromatic carboxylic acid Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.236683902 8.100824655 8.275330144 7.961426707 7.799108613 7.823598634 7.463579052 7.640677247 8.034137066 7.712448704 7.700621383 7.988581592 22203362 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 8.528735034 8.34177896 8.461761392 7.763769777 7.83773096 7.613913247 7.189141749 7.351025075 7.476586835 7.544620953 7.680606922 111219730 nmoA Organic Remediation Aromatics Nitoaromatics Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 8.327409069 8.419550512 8.300182066 8.339716381 8.417515643 8.19369739 8.347901636 8.7800836 8.360857356 8.676049691 8.527428385 8.308588528 149202313 sigma_32 Stress Sigma factors Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 9.417391082 9.163999623 9.120070171 9.138262429 9.084458194 8.977326358 9.291047761 9.102681347 8.874376192 9.039720092 9.051097256 9.020058847 116228733 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 8.52864135 8.403525231 8.274761384 8.205732477 8.230937471 8.127505848 8.41256651 8.370440224 8.138274708 8.283475624 8.332871796 208009309 cydA Stress Oxygen limitation Aliivibrio salmonicida LFI1238 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Aliivibrio salmonicida; 8.406049533 8.615241798 8.836051915 8.308238969 7.991447339 7.34542279 7.117843213 7.716813762 7.87741841 8.098775546 189202514 phoA Stress Phosphate limitation Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7.831658196 7.804660744 7.549996567 7.625848728 7.964908624 7.935957779 7.760224253 8.051841898 39649069 tftH Organic Remediation Aromatics Chlorinated aromatics Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.697245373 8.721352681 8.461438736 9.107129072 9.14594238 8.805266669 9.041631894 9.19328975 8.811289217 9.063243438 8.712381978 8.53664319 78060920 atzC Organic Remediation Herbicides related compound Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.959943875 8.843666846 8.897080485 8.609476119 8.332813668 8.799616599 8.828749233 8.552956847 8.720626517 8.688939912 8.6670377 9864060 chnB Organic Remediation Other Hydrocarbons Brevibacterium sp. HCU superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium; 8.455952001 8.186232434 8.24255408 8.853482559 8.415918378 7.863556502 8.584226908 8.613584238 8.643685554 8.512348461 8.43461747 8.050931782 168197 nitA Organic Remediation Aromatics Other aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Leptosphaeriaceae;genus:Gloeocercospora; 8.09088494 7.976592225 8.310398925 8.125422639 8.011804956 7.758239736 7.807956876 7.961336568 8.146109254 7.948281552 7.705829352 7.641553128 88812995 pilin virulence pilin Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 9.600797731 9.692650327 9.41290759 9.245920695 9.282425966 9.060168991 8.912955046 9.043981798 8.862632099 9.006946234 9.007959364 9.286290938 50546150 nitA Organic Remediation Aromatics Other aromatics Yarrowia lipolytica superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Dipodascaceae;genus:Yarrowia;species:Yarrowia lipolytica; 8.615484024 8.32854262 8.78801269 8.252016914 7.997909474 7.898720165 8.50125503 8.135587798 8.515183634 8.336323574 8.347890994 8.397443104 226358398 rubisco Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.954390897 8.774356226 9.15074398 8.269173132 8.55464103 8.29227814 8.640576188 8.720825876 1771524 catB Organic Remediation Aromatics BTEX and related aromatics Rhodococcus opacus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 9.912356537 9.223212487 8.858573526 10.07586783 9.88241132 9.835925069 9.564053921 9.930660828 9.498112021 9.789943782 9.968915266 9.278223109 196238650 amyA Carbon cycling Carbon degradation Starch Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 9.321793083 9.236007131 9.210527861 8.758784479 8.764189282 8.704000245 9.002527773 8.897751408 8.648713249 8.997302149 8.913747477 8.963064637 146410630 CadA Metal Resistance Cadmium Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 9.375991262 9.022547804 8.947327426 8.878860564 8.997917642 8.805377601 8.957567938 9.370395912 8.79433313 9.375804793 9.200643274 9.15317783 83312449 gyrB other category gyrB Magnetospirillum magneticum AMB-1 8.490083873 8.110379418 8.409900827 8.119236291 8.250988091 7.927383872 8.292515733 8.261303562 8.215727932 8.150386913 7.983060787 8.122247735 109660026 ureC Nitrogen Ammonification unidentified bacterial contaminant superkingdom:Bacteria; 9.013312008 8.806416768 9.044315273 8.586327989 8.455526893 8.504025308 8.450202374 8.421830768 8.461651802 8.401281387 8.458489142 8.499918514 254521916 iro virulence Stenotrophomonas sp. SKA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 8.800461446 8.678715593 8.731484908 8.525329359 8.218237063 8.94933651 8.931882917 8.842112145 8.623080864 8.545309378 8.449912849 170739533 fnr Stress Oxygen stress Methylobacterium sp. 4-46 8.512668988 8.039623903 8.027612253 8.179045944 7.613539579 7.400628328 7.777991172 7.852702022 8.135886699 7.525877674 7.237545995 7.271689672 21220390 TerD Metal Resistance Tellurium Streptomyces coelicolor A3(2) 7.842822766 8.149076147 8.055197868 7.992137213 8.120503807 7.817215873 8.505428499 8.100837248 8.12957704 8.046793409 7.884880543 115422893 silC Metal Resistance Silver Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 9.238372574 9.411397394 9.162798061 8.373922696 9.148736102 9.370118036 9.267308857 9.19655068 8.983926469 9.038223281 9.160213227 69952611 amyA Carbon cycling Carbon degradation Starch Shewanella frigidimarina NCIMB 400 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella frigidimarina; 9.081736067 9.010722354 9.064714078 9.224249842 9.278611587 8.967990161 9.421009235 9.38427456 9.069362603 9.356289575 9.293390923 8.961528189 119872935 CopA Metal Resistance Copper Pyrobaculum islandicum DSM 4184 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum islandicum; 9.550505427 9.404326781 9.280849618 8.991114496 8.924355966 9.080977453 9.166132359 8.865567789 9.082024086 8.749609236 8.781993331 8.884529133 32170713 nagG Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces sp. WA46 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 9.02529712 9.366841207 9.13108749 9.139734698 9.230287974 8.84106524 9.132128138 9.522923964 9.253866808 9.468274159 8.919745139 9.278460891 56314331 pstB Stress Phosphate limitation Aromatoleum aromaticum EbN1 7.820669793 7.730590018 7.609519683 7.653319513 7.717365738 8.148027334 7.845077869 7.83523862 7.758439511 220717762 pcaG Organic Remediation Aromatics Other aromatics Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 9.023832981 9.080341535 8.7232045 8.864280136 8.798349974 8.167659846 8.813998958 8.720055606 8.634479195 8.883749563 8.867399286 8.492206394 240247488 narG Nitrogen Denitrification uncultured bacterium 8.952875274 9.128790582 8.848271079 9.351120763 9.400971955 9.567657335 9.692992949 9.943319516 9.524704127 10.10556833 10.05178523 9.664933538 145702842 polysaccharide_biosynthesis_protein_EPS Bioleaching EPS Metallosphaera sedula DSM 5348 8.325507674 8.746506774 7.772371098 8.310206952 8.534506404 8.66173171 8.629004648 8.063324701 8.446987167 8.692920129 8.396903601 229205105 Tet Antibiotic resistance other Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 9.08278157 8.856039846 8.50845639 8.407136917 8.27099604 8.411730616 9.068945418 8.858173724 8.657393169 8.594772432 94552532 fnr Stress Oxygen stress Candidatus Koribacter versatilis Ellin345 8.760445402 8.978438303 8.614093963 8.788303482 9.029686977 9.007662785 9.207043541 9.198717761 8.806240409 9.302056343 9.23709161 9.140790916 223019593 Catechol Organic Remediation Aromatics Other aromatics Rhodococcus erythropolis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.600392387 8.719146669 8.601086247 9.55318911 9.667718561 9.357736954 8.709501282 9.417457987 8.669312388 9.084075478 9.236007744 9.546947935 113526155 trzN Organic Remediation Herbicides related compound Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 9.142110465 8.91045049 8.858010442 8.540905238 9.003242051 8.959004004 8.63499108 8.872218714 8.759609961 8.923566081 9.138201712 8.625625815 118474270 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Campylobacter fetus subsp. fetus 82-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter fetus; 7.977598336 8.070478995 7.294895873 6.926619428 226365408 katE Stress Oxygen stress Rhodococcus opacus B4 8.81549407 8.902176899 8.912259145 8.732305575 8.621223774 8.597396671 8.764607642 8.677568666 8.564310775 8.529595755 8.52055239 8.569453006 193214874 ppx Phosphorus Phosphorus utilization Chloroherpeton thalassium ATCC 35110 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chloroherpeton;species:Chloroherpeton thalassium; 8.214415201 8.501137756 8.319356877 7.864387048 7.88876939 8.072048389 8.224598593 8.062955834 8.171817771 8.266685983 8.388938497 8.409725084 158425272 glnA Stress Nitrogen limitation Azorhizobium caulinodans ORS 571 9.50392432 9.184596254 9.121270265 9.53777059 9.38240845 9.301710753 9.502727099 9.465494424 9.362117932 9.381649763 9.382296153 9.279943977 270498137 sigma_24 Stress Sigma factors Micromonospora aurantiaca ATCC 27029 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora aurantiaca; 9.162716532 8.937494647 8.998898024 8.743601997 8.62099836 8.571334952 9.053998648 8.940680143 9.022063422 8.653602625 8.903866264 8.841318253 149814429 sigma_32 Stress Sigma factors Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 8.279095734 8.074549712 8.520449312 8.242935408 7.920475426 7.514007125 7.815996709 8.058934882 8.307909532 8.151366477 8.047256347 8.02683136 227274985 B_lactamase_C Antibiotic resistance Beta-lactamases Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 8.254039756 8.202385261 7.736279117 7.717907875 7.95527913 7.743277066 7.918677025 8.128656161 8.360947594 8.317156391 8.10166369 224372513 fnr Stress Oxygen stress Nautilia profundicola AmH 8.191147073 8.055342093 7.283179817 7.338180294 7.468381231 93357391 iro virulence Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.169171446 8.284419996 8.154923912 7.7672424 8.074053589 8.383596114 8.659660053 7.783302703 8.694505441 7.968365797 7.889184023 8.106108218 194310091 pstB Stress Phosphate limitation Pelodictyon phaeoclathratiforme BU-1 8.084406495 8.06704272 8.333007176 7.273155969 7.309357061 7.580859239 7.046740937 6.914147206 7.514218452 110818963 TerZ Metal Resistance Tellurium Rhodococcus jostii RHA1 8.228012996 8.094750812 7.691583531 7.767819182 8.14149625 7.346862719 7.494814322 8.015891607 8.400663632 145569035 AceB Carbon cycling Carbon degradation others Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 10.14983341 9.659664127 9.989052326 9.463827518 9.329910691 8.943242104 9.425144766 9.383170841 9.825793841 9.541149598 9.605301623 9.163227758 159182524 mer Metal Resistance Mercury alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 8.917498519 8.919384031 8.941761254 8.484857579 8.119404518 8.199337897 8.013678263 8.335672028 8.550261353 8.326308571 8.344964913 8.701700063 117168600 phtA Organic Remediation Aromatics Aromatic carboxylic acid Polyangium cellulosum superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium; 8.796468432 8.560748281 8.576458514 8.001713316 8.400103302 8.368533325 8.65460218 7.666720226 8.65534022 8.24573118 8.234815592 8.180153524 126739467 nagG Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.549581703 8.708140494 7.613540263 7.689420048 7.582759561 7.328680458 7.516396534 7.79535094 7.795637218 7.984595839 8.220529771 160366066 alkH Organic Remediation Other Hydrocarbons Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 9.219669659 9.125681199 8.958789458 8.756840729 8.537861207 8.383613868 8.666050526 8.472949658 8.525837497 8.730682011 8.777241751 8.647895031 206586502 APS_AprA Sulphur adenylylsulfate reductase Olavius ilvae Delta 1 endosymbiont 8.655472288 8.394880897 8.686862776 7.859731546 7.969788124 8.206767083 8.110643614 8.135460174 8.064666306 8.263785867 8.222213867 7.860290072 118470726 cpnA Organic Remediation Other Hydrocarbons Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 10.19110907 10.09643329 10.07584134 10.18593485 10.06435627 9.759352231 9.812075767 10.18615041 9.999298099 9.941820987 9.850119229 10.22077158 222138057 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.816773443 8.585297055 8.491569665 8.135240684 7.848327374 7.890315702 7.536743909 7.330846754 7.985447096 7.932312098 7.44224043 8.001696315 92119182 CadA Metal Resistance Cadmium Nitrobacter hamburgensis X14 8.285725714 8.171056802 7.668326515 7.62496646 7.751105483 8.066039872 7.820829389 8.103817996 7.7551273 7.960472759 7.943435181 209503326 cellobiase Carbon cycling Carbon degradation Cellulose Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 9.407631835 9.848904197 9.702351244 8.613580885 9.259232179 9.516974826 10.04142252 9.371212649 10.0234284 9.112592774 8.903530616 9.516893838 50818137 mcrA Carbon cycling Methane Methane production Methanomethylovorans thermophila superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanomethylovorans; 8.325105929 8.10871363 8.326849167 8.421333377 8.04841776 7.972520628 7.609450644 8.292038784 8.26050081 8.174827801 7.675076302 8.232123226 192808655 Tet Antibiotic resistance other Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.308668386 8.376494085 8.507439132 8.068675862 8.018591909 8.090269065 8.257152258 7.850472936 8.446043192 8.15215575 8.307747331 62149172 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.987217524 9.120150104 8.879659836 8.705365766 8.828275927 8.827916974 8.94367264 9.075776046 8.839129709 8.997515141 8.941144246 8.882599908 34104418 TerC Metal Resistance Tellurium Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 8.759355233 8.573104392 8.526760738 8.505129476 8.467609396 8.330299917 8.619382249 8.674310574 8.515900199 8.754066083 8.798402929 8.440993298 iegcoxL16 CODH Carbon cycling Carbon fixation 8.594957809 8.719246061 8.364548752 7.953071212 8.152763177 8.354450045 8.629346523 8.034050433 8.561754935 8.302762127 8.469664046 8.296902795 171058342 phoB Stress Phosphate limitation Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 8.037204841 8.185394801 7.53117389 7.696541299 7.55238575 7.481368627 7.602891268 8.034437796 7.622453246 7.697327948 7.878049181 119386752 ChrA Metal Resistance Chromium Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.462010997 8.359536394 8.407611455 8.069806837 8.419040013 8.449345565 8.616684721 7.310285291 8.707845771 7.666043611 8.063661916 7.964640612 177843614 sigma_70 Stress Sigma factors Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 8.405502321 8.556365904 8.277806645 7.960548443 8.034090889 7.856630206 8.624395463 8.170449369 8.210512817 8.321019475 7.970105945 262313079 oxyR Stress Oxygen stress Acinetobacter junii SH205 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter junii; 8.634193592 8.611897768 8.238659818 8.37618189 8.141325777 8.264892468 9.215526173 8.38262561 70930953 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.289516686 7.200209581 7.148189901 6.814851507 6.975343288 7.164976604 7.430844106 146307643 chnB Organic Remediation Other Hydrocarbons Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 8.464860396 8.432164793 8.053782923 8.03534817 7.62555296 7.932711918 7.984648858 7.913349012 7.859564801 8.003921209 7.662983675 76057001 narG Nitrogen Denitrification uncultured bacterium 8.594329405 8.572305418 8.186064213 8.151234344 7.852348195 7.982192077 8.237918894 8.31339901 8.110379644 7.833262793 7.96731466 116694540 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.983171896 9.020707963 8.688086396 9.143363332 9.077152157 8.733800995 8.782099747 8.704834854 8.725399514 268586468 oxyR Stress Oxygen stress Neisseria gonorrhoeae PID18 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria gonorrhoeae; 8.190523361 8.36892925 8.220279617 7.830139364 7.654271557 7.727346949 7.684762916 7.587711256 7.944162507 7.440836875 7.394358673 7.779014249 124899480 ArsC Metal Resistance Arsenic Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 8.342077556 8.567298928 8.532553413 8.3860252 8.634551628 8.244936646 7.936350654 8.284375868 8.011299738 8.195025424 8.396474178 8.471066412 258561631 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium genitalium; 9.301941532 9.267140555 9.570312468 9.330493099 9.36178768 8.820912581 9.323816954 9.364486685 9.39892708 9.26547448 9.299415226 9.479629261 76574533 contractile_central_tail_tube_protein Bacteria phage STRUCTURAL Synechococcus cyanophage syn9 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 9.523652296 9.493156665 9.289590738 8.868466046 9.040502988 9.11984456 8.752600764 8.717179664 8.726801611 9.06272156 9.339855183 9.233074067 221730833 CadA Metal Resistance Cadmium Diaphorobacter sp. TPSY superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax ebreus; 8.734138704 8.882162156 9.157902569 8.967741936 8.989620488 8.998593221 9.270687914 9.144137351 8.932836135 9.079824104 9.150589331 8.726101685 170077564 TerD Metal Resistance Tellurium Synechococcus sp. PCC 7002 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.682062133 8.735161332 8.727565519 8.692557873 8.960104079 8.764148478 9.022234447 9.636026741 8.971723432 9.541197527 9.546506638 9.667138312 29833824 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 9.318698308 9.522295748 8.954110625 9.247648234 8.546115993 9.140085344 9.858992212 9.428483216 9.340016546 8.686714041 8.909046937 9.04549028 258515753 arsM Metal Resistance Arsenic Desulfotomaculum acetoxidans DSM 771 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum acetoxidans; 8.886439693 9.000994498 9.260733447 8.678499648 8.185476066 8.392315729 8.116337357 7.959706919 8.40247049 8.166851139 8.482928655 158251694 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 7.36279468 7.296202333 7.157946565 227978118 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 8.158310709 8.606214952 8.54614091 8.035874682 8.111026057 8.641793267 8.547359481 8.258074146 8.61471252 8.150768552 8.299895197 8.49103917 118168209 bphA Organic Remediation Aromatics Polycyclic aromatics Mycobacterium avium 104 8.60510369 8.451428024 8.754062361 8.320027797 8.119726691 7.964917716 8.162770527 8.290369324 8.452126564 8.251645875 8.119461118 8.092523955 46196285 CopA Metal Resistance Copper Thermus thermophilus HB27 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 9.161776235 9.293184826 9.366601243 8.617185646 8.500501913 8.36925352 8.342214167 8.476199532 8.320484456 8.521116703 8.22964028 8.691593718 117991947 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 9.095265425 9.123399 8.793340612 8.816230636 8.928161173 8.649515427 8.960682829 8.782424343 8.833612589 8.834410902 8.927906879 8.467653628 46190829 ara Carbon cycling Carbon degradation Hemicellulose Bifidobacterium longum DJO10A superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 9.005008733 8.829162418 8.769378637 8.635940079 8.770910428 8.798790992 8.999218436 8.932302782 8.969421494 8.942505926 8.83291038 8.673091178 149935207 nrfA Nitrogen Dissimilatory N reduction Parabacteroides distasonis ATCC 8503 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides distasonis; 7.35939468 7.163692548 7.293912661 256769578 oxyR Stress Oxygen stress Streptomyces sp. C superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.262009999 8.371214873 8.671272249 8.629518094 8.578736034 8.401999177 8.472611081 8.646818011 8.618965609 8.553525937 8.605750729 8.144929383 254388207 ABC_antibiotic_transporter Antibiotic resistance transporter Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 8.151903311 8.435667591 8.63381591 8.803607376 8.829953962 8.339799415 8.968451684 8.298512968 8.700046272 8.673205265 8.757080223 195974815 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus equi; 8.99430638 8.951404036 9.015925398 8.437140052 8.037896478 8.007757015 7.426537715 7.310457871 7.87057034 8.19369545 8.13953909 170124223 SMR_antibiotics Antibiotic resistance transporter Escherichia albertii TW07627 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 8.414397102 8.535060474 7.904228919 8.355896462 8.229558368 8.436790853 8.101302907 8.222072901 8.177883566 8.390930007 8.284869105 182440090 ureC Nitrogen Ammonification Streptomyces griseus subsp. griseus NBRC 13350 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 8.867102431 8.604086367 8.950640546 8.369376429 8.145640616 8.405113042 8.550157769 8.263339795 8.368317951 8.252827112 8.521122211 8.300474248 194562390 ArsC Metal Resistance Arsenic Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 8.481256499 8.552818719 8.378813211 7.609498633 8.215062558 8.391085391 7.746236638 7.748806829 7.924719288 7.788094982 119670961 mauAB Organic Remediation Herbicides related compound Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 9.277237498 8.576905133 9.223909559 9.040239475 8.982556644 8.817981688 9.245431361 8.717712433 9.117776634 9.339111039 8.512315348 218758110 CadA Metal Resistance Cadmium Desulfovibrio vulgaris str. 'Miyazaki F' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 8.199328755 8.158762482 8.614221256 8.402990438 8.310724341 8.19452636 8.21077454 8.885054255 8.603824016 8.546261348 8.348623483 8.540740342 158187216 nagI Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. NCIMB 10467 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.594051614 8.432554612 8.549892445 7.966802576 7.956531373 8.19565066 8.040163911 7.940643605 8.176465902 8.126683232 8.099215207 8.123161354 227015873 vdh Carbon cycling Carbon degradation Others Pseudomonas nitroreducens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 9.32611323 9.150099571 9.008876794 8.660628384 8.796447717 8.767126468 8.813102568 8.602787424 9.060054773 8.793694279 9.01511539 8.79816365 218778460 narI Stress Oxygen limitation Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 8.80244012 8.917696955 8.91577062 8.12018727 8.043754217 8.271593611 7.703124309 7.721822433 8.283483698 8.035852921 7.984815662 8.312509292 218173571 amyA Carbon cycling Carbon degradation Starch Cyanothece sp. PCC 7424 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.630978588 8.785319608 8.819440575 9.308546378 9.101618307 8.390850153 9.151557781 8.811317687 9.206621674 8.798604672 115442834 tftH Organic Remediation Aromatics Chlorinated aromatics Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 9.232381752 9.450280677 8.366516818 9.23678281 9.18815825 9.056424848 8.955032173 9.18117479 8.995074372 9.165649184 9.412526414 8.96090259 39997233 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 10.81213542 10.73684541 10.62804803 10.16854731 10.30767966 10.22461681 10.37507849 10.44325477 10.38580834 10.84076403 10.82723101 10.55043892 126237374 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.398947806 8.305614874 8.509829336 8.238843913 8.54011737 8.613952012 8.808394968 8.479448443 9.074370929 8.820960112 8.788108603 119391451 narG Nitrogen Denitrification uncultured bacterium 8.220339825 8.148878491 8.188382039 8.218894776 8.046244881 7.84386811 8.161824413 7.982699721 7.961959997 7.746147717 7.734278213 7.744304098 146196126 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.534121488 8.804618995 8.646682038 8.732699402 8.650301666 8.430191424 8.654950032 8.915790651 8.761153115 8.967824744 8.501238227 8.624184389 84383515 glnA Stress Nitrogen limitation Janibacter sp. HTCC2649 8.405784823 8.473487322 8.621129899 8.654119787 8.446250492 8.295301662 8.539350247 8.628643859 8.542316425 8.43746048 8.12952179 29465996 norB Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.662331437 8.868903535 8.729135085 8.212904087 8.63648232 9.112604031 9.13218087 9.056652995 8.824550646 8.341364739 8.823223982 8.922996061 148258806 tftH Organic Remediation Aromatics Chlorinated aromatics Bradyrhizobium sp. BTAi1 9.084842492 8.87718719 8.909515737 8.256483448 8.521332589 8.621254371 9.71152675 9.508672865 9.988747137 9.726970787 9.456915065 9.650327996 259021356 GroES Stress Heat shock Rhodobacter sp. SW2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 8.360134133 8.370495312 8.022200572 8.156878076 7.955374818 7.871672599 8.02093485 7.833038353 8.111597579 7.785102338 8.133271373 89352825 phn Organic Remediation Herbicides related compound Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.464594101 8.624770558 8.887105229 8.37345245 8.335777673 8.427414183 8.363616978 8.191665715 8.626521746 8.108271084 7.983962631 8.305446741 73537913 mauAB Organic Remediation Herbicides related compound Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.64503545 8.531473746 8.929697502 9.002697915 8.700083749 9.153125343 8.902546219 8.751097161 8.79984978 9.028862153 8.46850234 197335031 MFS_antibiotic Antibiotic resistance transporter Vibrio fischeri MJ11 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Vibrio fischeri; 8.6044599 8.115881054 8.448336535 8.772101173 8.42682676 8.216780393 8.982873252 8.390409894 8.488002211 8.383896536 8.874798594 134284689 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 8.026493438 8.116147223 8.086645627 7.605898618 8.245589109 8.072102262 7.948609784 7.794983629 7.531167496 124257911 tutFDG Organic Remediation Aromatics BTEX and related aromatics Geobacter sp. TMJ1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.372674627 8.336029353 8.137289132 7.902273173 8.159824099 8.243434733 8.465026562 7.463749116 8.413822988 7.443155256 8.045271324 7.905537713 114737767 silP Metal Resistance Silver Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 9.727699117 9.454600627 9.634332991 8.908507447 8.879617241 8.720963518 8.797545958 8.893285842 8.739550591 8.912031093 9.215259847 9.107548266 219852898 CadA Metal Resistance Cadmium Candidatus Methanosphaerula palustris E1-9c superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;genus:Methanosphaerula;species:Methanosphaerula palustris; 8.278103475 7.898213501 7.99282826 8.601556017 8.552846406 7.711757357 8.569634455 8.930149005 8.421320253 160917583 narG Nitrogen Denitrification uncultured bacterium 8.476202151 8.385066838 8.330882537 8.049958724 8.113411696 8.042818545 7.947582989 8.067110853 8.208538328 8.01579955 7.959575381 7.850265799 239932330 ara Carbon cycling Carbon degradation Hemicellulose Streptomyces ghanaensis ATCC 14672 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 8.501960095 8.622948639 8.489180103 8.094674226 8.134576039 7.919903243 8.032419063 7.954598739 8.170088437 8.34722545 8.022599236 8.200582846 119949339 AceA Carbon cycling Carbon degradation others Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 8.715599984 8.357636086 8.469656256 8.60764206 8.445276552 8.207696623 8.573648441 8.520474466 8.340631508 8.334538814 8.315052114 120405037 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 9.675246793 9.687221346 9.427948175 9.239764462 9.260728736 9.171130886 9.280698724 9.234214365 9.409353546 9.397278575 9.38433177 9.453065912 108766124 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 8.965662825 8.933986858 8.880392527 8.766037274 8.658838716 8.394908748 8.59532792 8.798654181 8.665645175 8.810508693 8.908791247 8.571229195 67920647 dehH Organic Remediation Chlorinated solvents Crocosphaera watsonii WH 8501 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Crocosphaera;species:Crocosphaera watsonii; 8.760086278 8.853948079 9.160641632 8.261386339 8.217520085 8.358754382 8.310973145 8.216019685 8.00955888 8.085993589 8.435353015 218772758 iro virulence Pseudomonas aeruginosa LESB58 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.541469274 8.928740029 8.656296532 8.339064455 8.341365337 8.551159207 8.389818378 8.297734105 8.878090514 8.116184234 8.512793205 8.356097609 124267460 xylJ Organic Remediation Aromatics BTEX and related aromatics Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 8.770644952 9.03658512 8.732779053 8.381749129 8.90241876 9.100035445 8.485563203 8.908776398 8.403697338 8.869532378 8.482555082 29652450 narG Nitrogen Denitrification uncultured bacterium 10.37328261 10.1785957 10.28100361 9.415893764 9.461227082 9.328723681 9.892233338 9.625986819 10.02465781 9.785510772 9.849534291 9.883683987 148830292 pimF Organic Remediation Aromatics Aromatic carboxylic acid Erythrobacter sp. SD-21 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 7.635492942 7.544675713 7.487977795 7.216988306 7.779783836 7.883314848 7.838626558 7.589233941 7.818136693 59797386 nifH Nitrogen Nitrogen fixation Paenibacillus massiliensis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.127149185 7.189503908 7.089415239 61808012 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.385717434 8.4503884 8.78292189 7.903985886 8.0801379 8.613333699 7.953431175 8.552215822 8.103402858 7.976275363 7.919247439 163258378 katE Stress Oxygen stress Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 9.412691052 9.133336271 9.279114512 9.015002527 9.012096494 8.695252874 8.536564033 9.016292689 8.531532102 8.810249193 8.777696318 9.153555982 117949596 phenol_oxidase Carbon cycling Carbon degradation Lignin Streptomyces sp. RU06 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.828125271 8.319271468 8.495126476 7.848781114 7.772340359 7.946438135 7.915108716 7.471318028 7.85729931 7.651921818 7.834156709 167761524 phoB Stress Phosphate limitation Clostridium scindens ATCC 35704 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium scindens; 8.583666833 8.585031937 8.690212857 8.090121544 8.235763973 8.209194965 7.996861374 8.239404818 8.35585322 8.191592839 8.35848949 117928665 exochitinase Carbon cycling Carbon degradation Chitin Acidothermus cellulolyticus 11B 8.992864817 9.080395393 8.981401961 8.439013336 8.427712623 8.942031892 8.319059861 8.964265011 8.474535647 8.554241829 8.954561954 254506696 pstB Stress Phosphate limitation Vibrio parahaemolyticus 16 7.809757742 7.785099753 8.023691229 7.676126641 7.777098478 8.144591778 7.625041212 7.68735449 88800946 SMR_antibiotics Antibiotic resistance transporter Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 8.641297418 8.836327976 8.736118216 8.672195957 8.939658239 8.787810977 8.588734909 8.891354166 8.711633765 8.841906339 8.827243645 8.121825513 46519977 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.852557568 8.828301451 9.020538844 8.668184538 8.450153378 8.418122197 7.963803761 7.99133533 8.184536175 8.206947781 8.230334243 8.406592754 119453607 pstB Stress Phosphate limitation Lyngbya sp. PCC 8106 7.932187805 7.984498999 7.342730877 7.20646636 7.153412587 6.768615837 6.801993482 7.567060346 6.99175563 7.0393957 7.024786451 242222827 endochitinase Carbon cycling Carbon degradation Chitin Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 8.085391874 8.05872048 8.160301623 7.851472295 7.899779215 7.724518126 7.425289823 7.74376033 7.773713521 7.532788812 7.527603723 7.693628796 218757755 fnr Stress Oxygen stress Desulfovibrio vulgaris str. 'Miyazaki F' 9.689317817 9.628140948 9.490166699 9.242524269 9.168247448 8.938737858 9.223087203 9.220368345 9.559554339 9.469029658 9.520743389 9.467258287 109626263 ArsA Metal Resistance Arsenic Haloquadratum walsbyi DSM 16790 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloquadratum;species:Haloquadratum walsbyi; 8.867536365 8.873049201 8.908618198 9.274875922 9.114346252 9.00288677 9.701124464 9.108861423 9.398327586 9.306279245 9.443638874 167592096 ppx Phosphorus Phosphorus utilization Heliobacterium modesticaldum Ice1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Heliobacteriaceae;genus:Heliobacterium;species:Heliobacterium modesticaldum; 8.338251153 8.36133833 8.187212339 8.469688233 8.493511398 8.58890343 7.659858085 8.564290747 8.314267111 8.466343219 8.543663686 7.887233045 167571925 phn Organic Remediation Herbicides related compound Burkholderia oklahomensis C6786 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia oklahomensis; 9.017193754 9.337077412 9.282781227 8.868560869 8.911567218 8.864970573 9.45354144 8.965477525 9.467421877 8.875583765 9.019318291 8.816072278 259417017 ureC Nitrogen Ammonification Silicibacter sp. TrichCH4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8.725511886 8.681640354 8.776036283 8.191877745 7.998757438 7.919633145 8.029596618 7.951282342 8.22404773 8.022538353 7.959744429 8.23653664 184192713 mer Metal Resistance Mercury Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.767296619 8.658800003 8.643975068 8.215170075 8.15494253 8.115734174 8.500353559 8.392506852 8.513640395 8.327317468 8.354203581 8.177684977 119378391 bclA Organic Remediation Aromatics Aromatic carboxylic acid Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.473879775 8.347415669 8.602177971 8.522869518 8.396774767 8.300184937 8.49146625 8.899477017 8.631633157 8.569903485 8.373332357 8.448455892 162072845 dsrB Sulphur sulfite reductase Thiothrix nivea superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Thiothrix; 8.023716706 8.065759514 8.211907656 7.54373649 7.574666714 7.54674276 7.401069558 7.588412523 7.664982552 7.817885164 7.666230437 193086625 SMR_antibiotics Antibiotic resistance transporter Chlorobaculum parvum NCIB 8327 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum parvum; 8.314574121 7.984760957 8.404993866 7.99041978 8.003202253 7.838652817 7.780820298 7.996479049 7.800366524 7.943587131 91781705 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.289272251 8.279496059 8.126581413 8.102822025 8.192784281 7.808231674 8.48001667 8.155171371 8.218914894 8.108486277 8.177890461 8.142302362 134099293 pimF Organic Remediation Aromatics Aromatic carboxylic acid Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 8.209830415 8.519742076 8.263737452 8.726290411 8.98862746 9.1604091 9.151225389 9.511907171 9.020027069 9.196387782 9.352370477 9.346400503 167840860 nmoA Organic Remediation Aromatics Nitoaromatics Burkholderia thailandensis MSMB43 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 8.219176784 8.201282813 8.207450242 8.200080985 8.045598964 8.077023001 8.111109315 8.011181738 145304813 exoglucanase Carbon cycling Carbon degradation Cellulose Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 10.03281734 9.800571907 9.928127023 10.00659894 10.33832996 10.30031491 9.935721726 10.33159831 9.610885062 10.2487817 10.19419562 10.4785437 258576715 endochitinase Carbon cycling Carbon degradation Chitin Uncinocarpus reesii 1704 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 8.766770785 8.461479617 8.893303193 8.521519736 8.33201055 8.506614686 8.884008085 8.62228555 7.195473426 8.337402292 8.657731595 8.369658447 237805711 AceB Carbon cycling Carbon degradation others Pseudomonas syringae pv. oryzae str. 1_6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 8.009965465 8.104016314 7.678702286 7.336328497 7.941625275 7.839803084 6.886330281 7.167047208 7.476388209 7.638946885 214042746 rd Organic Remediation Chlorinated solvents Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.760476357 8.70467108 8.687141213 8.496050399 8.054573234 8.38409045 8.27923568 8.147991445 8.487233836 8.5336743 8.107180778 219945063 fnr Stress Oxygen stress Methylobacterium nodulans ORS 2060 8.78171773 8.825351793 9.191690774 8.731306132 8.493861334 8.310625484 8.495850582 8.683350322 8.769465255 8.863879418 8.792859331 8.812614795 27311189 terminase_large_subunit Bacteria phage REPLICATION Vibrio phage VHML order:Caudovirales;family:Myoviridae; 8.229104699 7.920969489 7.838237349 7.348406061 8.195810995 7.640988364 8.198218139 8.398962296 184192943 MFS_antibiotic Antibiotic resistance transporter Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.124710194 7.859284147 8.149957908 8.128621604 7.703205156 7.773537637 7.905039267 7.864114659 8.308784495 7.607172808 7.573268449 7.417213207 170141293 ALN Organic Remediation Others Burkholderia graminis C4D1M 8.236051373 8.238081715 7.575594071 7.692988104 7.800293751 7.947534572 7.395038772 8.146906945 7.592139075 7.487311879 7.781698995 68264609 alkB Organic Remediation Other Hydrocarbons Corynebacterium jeikeium K411 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 9.150783593 9.392706127 9.676690555 8.789111914 8.751544255 8.971023435 9.399539826 8.924233859 9.158551306 8.7125624 8.314042055 8.936740562 169810379 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 8.417280574 8.305289245 8.403858071 8.070419754 7.946968896 7.856339761 7.27691525 7.481201899 8.087615948 7.61838723 7.63996651 7.812185806 83649351 CopA Metal Resistance Copper Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 9.170466082 9.012482051 9.274281951 8.66071201 8.527718807 8.567201415 8.410666332 8.532560122 8.581866703 8.554647032 8.779445963 262037001 amoA Nitrogen Nitrification superkingdom:Archaea; 8.056814226 8.220138181 8.530031901 7.943772132 7.831259067 7.775995461 8.259837879 8.525605081 7.650093488 7.477616135 7.588926367 20135961 carA Organic Remediation Aromatics Heterocyclic aromatics Sphingomonas sp. KA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 9.151332339 9.279933979 9.108815977 8.924575208 8.938893745 9.165152539 9.114915856 9.160434955 9.114663036 9.3735399 9.260284398 9.207262949 24350721 pstS Stress Phosphate limitation Shewanella oneidensis MR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella oneidensis; 8.725181671 8.613298119 8.590693297 8.426608052 8.39808695 8.609103505 8.14075439 8.549055475 8.478545308 8.668692125 8.847291887 8.245506517 7595786 amoA Nitrogen Nitrification superkingdom:Bacteria; 8.819718329 8.802497989 9.148780713 8.008396797 8.057896936 8.229640196 8.345693559 7.869220483 8.210852019 7.927673918 7.904679749 8.207172982 255331543 pstB Stress Phosphate limitation Geobacillus sp. Y4.1MC1 8.47717647 8.191040504 8.575707973 7.867532409 7.797700394 7.763793575 7.715934816 7.640783219 7.95998849 7.78361475 7.666771898 7.822967749 227875566 ahpF Stress Oxygen stress Mobiluncus mulieris ATCC 35243 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus mulieris; 9.178995519 9.174042732 9.166483115 8.540090755 8.442001797 8.668763888 8.419845148 8.147718309 8.568735223 8.377701292 8.365218118 8.625977742 72125013 mdlB Organic Remediation Aromatics Aromatic carboxylic acid Strongylocentrotus purpuratus superkingdom:Eukaryota;kingdom:Metazoa;phylum:Echinodermata;class:Echinoidea;order:Echinoida;family:Strongylocentrotidae;genus:Strongylocentrotus; 8.456950395 8.32136108 8.579555818 7.919454792 7.679860281 7.787718935 7.664576288 7.436987577 7.864011144 7.608220057 7.511150333 7.804012849 210065277 BpH Organic Remediation Aromatics Aromatic carboxylic acid Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 8.735167783 8.740752901 8.630745364 8.499227793 8.362402627 8.181186402 8.229224691 8.49908904 8.606384568 8.521108395 8.444204947 8.445398729 27381369 MFS_antibiotic Antibiotic resistance transporter Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.56114475 8.584921451 8.745081286 8.504618577 8.181570546 8.12981121 8.485511789 8.191361781 8.523604317 8.251786739 8.351435153 8.263298633 157912302 xylA Carbon cycling Carbon degradation Hemicellulose Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 8.362708291 8.418365316 8.688671261 8.060315615 7.99769919 8.10448408 7.633626881 7.787512434 7.72350245 7.898952186 8.023773454 78167184 nifH Nitrogen Nitrogen fixation Pelodictyon luteolum DSM 273 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon luteolum; 8.330163947 8.075811152 8.369963614 8.104254643 8.002704732 7.500646517 7.838112646 8.158364449 8.001479452 7.946250762 8.013534004 7.891751285 50542666 rubisco Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 9.107026448 9.203274548 9.15200842 8.408050338 7.937002259 8.370180044 8.705376952 8.198797254 8.457612001 8.276888902 8.419261904 8.529448678 99083293 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.997364485 7.83496786 8.092927145 7.569273212 7.433751147 7.346165963 7.252280369 7.140653808 7.670130515 7.206969759 7.221715834 7.319516851 166858084 iro virulence Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 9.619633263 9.284724906 9.87425264 9.73449953 9.524373183 9.315100874 9.548702985 9.952115679 9.58451594 9.867582993 9.878949152 10.09985869 145305279 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 9.345205531 9.130738651 9.282378313 8.75310012 8.680117205 8.614374144 8.879913425 8.531960888 9.146381585 8.717803372 8.840102819 8.615867974 192897548 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 8.14765073 8.047684576 8.577157995 8.356207925 8.250929057 7.982506512 8.077564805 8.755616283 8.43789385 8.573860623 8.300785263 8.497003659 70998454 endochitinase Carbon cycling Carbon degradation Chitin Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 9.353279607 9.150042173 9.30640877 9.128283835 9.124520158 9.181842645 8.693276616 9.220411475 8.719355485 8.979553908 8.94511882 9.149277277 254673045 iro virulence Neisseria meningitidis serogroup W135 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria meningitidis; 8.99743244 9.189478905 9.031741055 9.021686974 8.956888694 8.848696037 9.238953877 9.424879786 9.208215487 9.376386746 9.072888269 9.373722819 170077935 ChrA Metal Resistance Chromium Synechococcus sp. PCC 7002 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.627321917 8.570987314 8.911747764 8.29104183 8.09790723 7.958319988 7.851384608 7.767951461 8.259824966 7.649753131 7.671189443 8.113105067 196192649 ureC Nitrogen Ammonification Synechococcus sp. PCC 7335 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.039294474 7.2241636 7.197435953 77974248 CopA Metal Resistance Copper Yersinia frederiksenii ATCC 33641 8.335120752 8.510843639 8.572953782 7.6442201 8.175739585 8.203800587 8.236884428 7.746950335 8.720207501 7.815715124 7.917608514 8.029894666 98977997 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Sphingopyxis alaskensis RB2256 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 8.745771605 8.840155797 8.575439508 9.187865896 8.968611658 8.847768454 8.811015944 9.19172431 8.699164822 8.989710101 9.04653339 8.441432292 254464221 sox Sulphur Sulphur oxidation Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.617635797 8.325085211 8.311970074 8.216392479 8.085926098 7.968031931 8.280254811 8.59042213 8.410141406 8.605291437 8.342266184 8.352767274 134057937 phenol_oxidase Carbon cycling Carbon degradation Lignin Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 8.38211796 8.071610666 7.899110391 8.343570274 8.284540247 8.417711443 8.324092262 8.138078044 8.11146136 7.733329699 8.160150763 7.635511485 84392203 atzB Organic Remediation Herbicides related compound Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 8.681613441 9.12227069 8.745353834 8.787600214 8.726569472 8.332221401 8.700468976 8.687532899 8.640982463 8.682358105 8.516222685 8.305716784 210630336 cellobiase Carbon cycling Carbon degradation Cellulose Collinsella stercoris DSM 13279 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella stercoris; 8.976694401 9.086413368 9.307633244 8.982828102 8.953737651 8.875680877 8.635273599 9.034972272 8.33975175 9.080172928 9.115072235 9.352131081 221566027 Tet Antibiotic resistance other Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.440454409 8.21720573 8.434251056 7.994455083 7.871747234 7.772183937 7.474367572 7.863156144 8.150000326 7.862499568 7.866720348 7.983366203 146313767 pstS Stress Phosphate limitation Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 9.060450628 8.617255113 8.327108579 8.75467164 9.03233223 8.829337298 8.59836176 9.273050992 8.78213407 8.978734183 8.882080225 9.152594425 270281466 SMR_antibiotics Antibiotic resistance transporter Pediococcus acidilactici 7_4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Pediococcus;species:Pediococcus acidilactici; 8.663321135 8.507175304 8.5732502 8.025597529 7.857642479 7.864533969 7.591061515 7.559917062 8.339923475 7.545103341 7.573600103 8.025927263 108765826 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 9.651778491 9.007748143 8.493683318 9.357213767 9.34117762 8.998592548 9.440810345 9.374297637 8.781091109 9.25539562 9.186379861 8.938056164 240170882 pcc Carbon cycling Carbon fixation Mycobacterium kansasii ATCC 12478 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 9.732360586 9.714889397 9.21617213 9.060645431 9.273099296 9.682974332 9.316479943 9.48803172 9.259185686 9.345409934 9.263455902 192897600 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 8.699698824 8.904039493 8.981770084 9.337938092 9.044302999 8.632413664 8.97060405 9.13019251 8.862087434 9.005582236 8.678466972 8.816684869 123978259 catB Organic Remediation Aromatics BTEX and related aromatics Hyperthermus butylicus DSM 5456 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Pyrodictiaceae;genus:Hyperthermus;species:Hyperthermus butylicus; 8.900788547 8.877766831 9.25424508 8.484359048 8.524568049 8.460049875 8.585059261 8.353948349 8.542264558 8.312625737 8.365148171 8.571776929 76667545 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.492335556 8.515546428 8.545100324 7.803192117 7.646579593 7.769540759 7.450140258 7.349482215 8.070022348 7.460144116 7.393571127 7.700113603 119391433 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.812236291 9.37422678 9.532270179 10.03829435 10.04008229 9.986173974 9.623534791 10.06574989 9.677368932 10.13394459 10.20977327 9.623327972 214044584 hrcA Stress Heat shock Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 9.385188023 9.54896167 9.646003971 9.08423512 9.21151836 9.183853945 9.074894572 9.383323547 9.018766848 9.423138981 9.191251296 9.403737433 118070423 tfdA Organic Remediation Aromatics Chlorinated aromatics Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 8.241168259 8.372152683 8.224699218 7.926969808 7.265544136 7.493343839 7.845954796 7.552604288 167653289 fnr Stress Oxygen stress Anaerostipes caccae DSM 14662 8.687657228 8.5236232 8.953225564 7.722546826 7.6837696 7.872323179 7.825517405 7.53087402 7.886552227 7.46386466 7.624182815 7.92162171 83316808 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.521347748 8.528425108 8.670579003 8.728945202 8.653980473 8.43621073 8.59118849 8.830886941 8.467056729 8.891069086 8.383118197 8.343937404 72119457 gyrB other category gyrB Ralstonia eutropha JMP134 8.0925403 8.109038902 7.745165563 7.621964233 7.840970609 7.414320171 7.804804918 8.152398359 7.745420184 7.618221659 7.548709086 196192684 iro virulence Synechococcus sp. PCC 7335 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 9.717202934 9.354469847 9.498129262 8.744056424 8.852427428 8.620439815 9.212164104 9.391210155 9.345874933 9.024079801 8.756751525 9.120785273 119950195 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 7.999128902 8.022474189 8.31759585 7.25899538 7.331972408 7.648176373 7.668019112 7.1255721 7.977685584 7.201673422 7.548222171 7.448318864 162149047 exaA Organic Remediation Chlorinated solvents Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 9.212573281 9.152318131 9.323527068 8.527241759 8.825967653 8.784347608 8.608401448 8.35792232 8.065033825 8.2891801 8.669183264 223964969 groEL Stress Heat shock Holdemania filiformis DSM 12042 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichi;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Holdemania;species:Holdemania filiformis; 8.864243806 8.720889821 8.845756024 9.088980211 8.848029062 8.801135751 8.799897078 8.992241917 8.879585178 8.872877553 9.449128841 8.802034434 63003133 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured soil bacterium 9.222770279 9.404624481 9.147272775 9.259790592 9.145849637 9.014347266 9.450235477 9.200831631 9.281857354 8.975901239 8.983832935 8.998408565 239796540 hydrogenase Energy process Energy process Desulfovibrio magneticus RS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio magneticus; 9.806976315 9.699527934 9.486192806 9.244037389 9.32329627 9.192500746 9.305776222 9.266689815 9.757960362 9.490499031 9.471866054 9.455654293 260891935 gyrB other category gyrB Ammonifex degensii KC4 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Ammonifex;species:Ammonifex degensii; 9.302038779 9.350501709 9.519683756 8.743499811 8.522854058 8.588939614 8.501094126 8.172772425 8.519289652 8.614571662 8.490917549 8.75378133 258536014 iro virulence Pantoea sp. At-9b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 8.754926678 8.873938693 8.750913287 8.222745548 8.175640778 8.097318769 8.166841352 7.929661103 8.026136079 7.856589148 7.691486122 8.263468865 160346414 sigma_24 Stress Sigma factors Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 8.289985993 8.435491646 8.264321882 8.150644198 8.106609285 7.931238245 7.621532212 7.925680847 8.348997235 7.94555882 8.018862867 8.061645377 169849055 pheA Organic Remediation Aromatics Other aromatics Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 8.231990355 7.813765995 8.169850849 7.396427288 7.323855985 7.774325017 7.388512621 7.162820233 7.663790417 7.280882772 7.484477296 7.421016552 223586081 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.78700053 8.865122363 8.576194141 8.257331077 8.237946395 8.529151224 8.627541472 8.377122551 8.371913081 8.393882451 8.308979665 8.073228172 55229187 CopA Metal Resistance Copper Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 7.522800715 7.216554097 7.328537991 6.834425866 7.070607325 88910241 DNA_polymerase_type_I Bacteria phage REPLICATION Mycobacteriophage Cooper order:Caudovirales;family:Siphoviridae; 8.617242949 9.021160918 8.777124641 8.512322555 8.617205855 8.6161008 8.814813401 9.173320628 9.104730492 8.739992457 8.676879012 50121906 SMR_antibiotics Antibiotic resistance transporter Erwinia carotovora subsp. atroseptica SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 8.732319311 8.38955996 8.694167051 8.30725172 7.873428714 8.169807331 8.33754958 7.964903008 8.40412552 7.90197935 7.834128937 8.25148177 119857507 nbzC Organic Remediation Aromatics Nitoaromatics Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.969537733 9.179208826 8.776672889 9.479579119 9.328953196 8.940995965 9.370603611 9.434809221 9.018291413 9.239540537 9.447264963 8.649006795 223938468 ara Carbon cycling Carbon degradation Hemicellulose bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 8.39596634 8.119924154 7.776344598 7.545596178 7.912453361 8.051003662 7.704795559 7.733517512 7.645595012 7.990091788 124485239 gyrB other category gyrB Methanocorpusculum labreanum Z 9.003344649 8.969658275 8.727478595 9.789426055 9.699000878 9.507965836 9.037795263 9.69677972 9.568392914 9.836085973 167362058 merP Metal Resistance Mercury Rhizobium leguminosarum bv. trifolii WSM1325 7.961315155 7.545508583 7.459387369 7.403127032 7.382437967 7.652881899 7.493864401 7.680665257 7.679220721 4468699 TerC Metal Resistance Tellurium Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.509372054 8.32434803 8.819867319 7.642143034 7.704358452 7.854095971 8.000059365 7.644519458 7.638118086 7.512427504 7.876075813 121554382 pheA Organic Remediation Aromatics Other aromatics Verminephrobacter eiseniae EF01-2 10.34526032 9.916908807 10.21050446 10.21848655 10.11895061 9.910476339 10.20412288 9.824865665 9.993941979 9.844907096 9.908367791 9.950066494 133754617 phenol_oxidase Carbon cycling Carbon degradation Lignin Agrocybe sp. B354 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Bolbitiaceae;genus:Agrocybe; 8.995334812 9.041168775 8.960252415 8.240972872 8.014922301 8.249717108 8.366961947 8.093408613 8.347313393 8.108583087 8.106965804 8.401796947 54015551 nhh Organic Remediation Aromatics Nitoaromatics Nocardia farcinica IFM 10152 8.59991278 8.898432008 8.72734489 8.198494751 8.675786315 9.18229194 9.363024619 9.164993233 9.057551876 9.320726755 9.227069974 9.327283162 91782285 cumD Organic Remediation Aromatics Other aromatics Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 9.087734045 9.217952552 9.423838603 8.593144015 8.786327344 8.829492066 9.34646888 8.956506795 9.52105677 8.669097535 8.730730222 8.663180226 167630746 obgE Stress Radiation stress Heliobacterium modesticaldum Ice1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Heliobacteriaceae;genus:Heliobacterium;species:Heliobacterium modesticaldum; 8.620374177 8.078046342 8.492196261 8.268743824 8.136500143 8.254643777 8.284240428 8.23658494 8.277384209 8.257201617 8.014850599 82884148 endoglucanase Carbon cycling Carbon degradation Cellulose Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8.687623935 8.866909963 8.792200845 8.100323497 8.099632676 8.354915706 8.363722265 7.820550926 8.213180309 8.27680405 8.557410461 8.412637325 34103853 narH Stress Oxygen limitation Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 8.783479758 8.667651309 8.197222757 8.224960518 8.277814015 8.382424724 8.464506556 8.400499775 8.550738242 8.473324005 260767786 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 8.374060411 7.932500387 8.331726976 7.49803458 7.337955795 7.519611424 7.537077752 7.35452744 35214406 akbD Organic Remediation Aromatics BTEX and related aromatics Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 8.109288955 8.093058815 7.992377686 7.809326478 7.871055383 8.167999597 7.888661236 8.168984595 7.626775766 7.677485701 7.792759917 27802509 B_lactamase_C Antibiotic resistance Beta-lactamases Yersinia bercovieri superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 8.625821492 8.549219638 8.646305083 8.34969734 8.201043283 7.911397605 8.160824732 8.234118216 124894708 tfdA Organic Remediation Aromatics Chlorinated aromatics Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 8.569777933 8.633181038 7.982191365 8.455301323 8.782801526 9.239419777 8.302681542 9.151067824 8.391077802 8.492524577 8.583335267 158114234 tfdA Organic Remediation Aromatics Chlorinated aromatics Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.408217809 8.193767405 8.495994744 8.232238295 8.306872442 8.510697507 8.173870006 8.349792566 8.3639389 8.231868393 8.768539524 8.283840548 187713979 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8.977761018 9.285167009 9.016666593 8.79624637 9.145765031 9.35232508 9.40141852 9.433086679 8.874971894 9.199273576 9.20539389 9.091592863 157285381 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.308464097 8.077375257 8.249577218 8.20998501 8.495487552 8.262483687 8.608673565 8.276725775 8.123166338 8.333223695 7.957118878 89045540 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Oceanicola granulosus HTCC2516 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 11.23529408 11.23169111 11.31133918 11.21560328 11.00124259 10.70208154 10.95158479 10.83521902 11.14786881 11.19170294 11.05671894 11.02647487 170141690 MFS_antibiotic Antibiotic resistance transporter Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 8.214105215 8.478886551 8.307869734 7.389120091 8.482215547 8.05911405 7.974894613 8.262484588 8.44514551 8.618971982 7.764394923 28410582 obgE Stress Radiation stress Tropheryma whipplei TW08/27 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;genus:Tropheryma;species:Tropheryma whipplei; 8.133208039 7.922606621 7.383122234 7.017879924 7.363518764 7.083956955 6.886221378 7.060142102 241665156 fnr Stress Oxygen stress Ralstonia pickettii 12D 9.294805354 9.301561427 9.446065672 8.571906512 8.514210952 8.50910466 8.58668145 8.359586079 8.578320083 8.4531867 8.828747464 54027534 TerD Metal Resistance Tellurium Nocardia farcinica IFM 10152 8.77184528 8.652758951 8.430254647 8.366133799 8.496156326 8.521422636 8.473084975 8.355374046 8.7952829 8.132409969 8.191904046 8.184989392 219721867 nmoA Organic Remediation Aromatics Nitoaromatics Stenotrophomonas sp. SKA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 8.049077092 7.972907787 8.250857416 8.401974517 8.153650057 8.169159303 8.125908498 8.230664432 8.277609706 8.384313262 8.274700044 7.904068372 262353136 nrfA Nitrogen Dissimilatory N reduction Bacteroides sp. 2_1_22 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 9.767245854 9.660812378 9.720050724 9.194316281 9.122685438 8.939472247 8.808001039 8.870865779 8.77615532 8.915454703 8.825428784 9.228416498 229372741 SMR_antibiotics Antibiotic resistance transporter Helicobacter bilis ATCC 43879 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter bilis; 8.456503094 8.341883638 8.516346047 7.745413643 7.847528902 7.586343157 7.588015358 7.506536992 7.940491397 7.540045051 7.31184873 7.929340214 151302114 AprA Sulphur adenylylsulfate reductase Archaeoglobus profundus DSM 5631 8.486863473 8.82406508 8.738712794 8.624465502 8.243106425 8.260757507 8.302526859 7.994996926 8.728453904 196178795 pstS Stress Phosphate limitation Microcoleus chthonoplastes PCC 7420 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus chthonoplastes; 9.172805114 9.321580037 9.475368171 8.62438294 8.649087562 8.605465335 9.145880449 8.873168633 9.240937643 8.492845858 8.579445879 8.509788621 194713779 dmsA Organic Remediation Others Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 9.090857506 8.90582535 9.032372068 8.544701493 8.69747852 8.665639318 8.453010372 8.697895268 8.444966598 8.896076891 8.83381389 8.624801098 52785856 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 9.146887685 9.205846759 9.113161954 8.752997806 8.614400493 8.630267623 8.831903777 8.331565717 8.743543688 8.757045689 8.768944433 8.669800096 225016907 glnA Stress Nitrogen limitation Clostridium methylpentosum DSM 5476 8.578125467 8.832071292 8.530980229 8.230312621 7.961695957 8.024876042 8.044022666 8.008768379 8.133633189 8.06449812 7.907224169 8.162103411 91700878 dehH109 Organic Remediation Chlorinated solvents Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 8.800300854 8.795084933 8.6902406 8.0924704 8.11332639 8.47982731 8.335816654 8.903950159 8.522195401 8.994368364 8.813899443 8.701574877 23094406 pcaG Organic Remediation Aromatics Other aromatics Rhodococcus opacus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.784404927 8.856323888 9.044845919 8.668539933 8.595574184 8.543356432 8.131346665 7.955745152 8.226631063 7.997517084 8.437942301 182634900 nmoA Organic Remediation Aromatics Nitoaromatics Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 10.062873 9.915295874 9.712240696 9.388382497 9.377847715 9.381457248 9.904782131 9.492832913 10.22759158 9.277242895 9.296064022 9.253403928 108804583 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 9.092790865 9.029068817 9.044008436 8.476393692 8.313840556 8.286526528 7.982105117 8.221244078 8.326832508 8.407632098 8.065526907 8.534718668 85707632 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Erythrobacter sp. NAP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 9.328234759 9.120202534 9.452007782 8.63033392 8.451941037 8.356038944 8.123572597 8.133039223 8.291706054 8.460454088 8.375578237 8.77642349 47717521 endolysin_transglycosylase Bacteria phage LYSIS Burkholderia cenocepacia phage BcepB1A order:Caudovirales;family:Myoviridae; 9.40145178 9.489572992 9.497061539 8.823602054 8.717298468 8.735705521 8.570204616 8.619657175 8.531760954 8.877626483 8.739051725 8.950625979 257053496 SMR_antibiotics Antibiotic resistance transporter Halorhabdus utahensis DSM 12940 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus utahensis; 8.385167951 8.279924456 8.391877285 8.515374914 8.4624549 8.661426865 8.747968104 8.414012769 8.767472687 8.561005812 8.295106381 1166403 amyA Carbon cycling Carbon degradation Starch Xanthomonas campestris superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas; 8.519372234 8.072232888 7.908845149 7.651337979 7.016956606 7.744779732 7.666508684 7.369681792 7.512147882 7.391465925 52548182 mnp Carbon cycling Carbon degradation Lignin Phanerochaete chrysosporium 8.169462104 7.916428363 8.450123038 8.366256249 7.992856378 7.875811342 7.80268631 8.129590575 8.151882168 8.150091135 8.044307685 7.744558128 91780381 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.638979363 8.756693837 9.039326074 8.312509581 7.8477697 8.189553095 7.901943076 7.991179695 7.91401229 7.924602575 8.231929125 145250957 endoglucanase Carbon cycling Carbon degradation Cellulose Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8.966336563 8.861096938 8.408012549 8.549990846 8.668498723 8.363149338 8.448448513 9.007434112 8.453298042 8.634652165 8.608062301 239821630 oxyR Stress Oxygen stress Ochrobactrum intermedium LMG 3301 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 8.880461904 8.916396908 8.776761982 8.323380374 8.299987745 8.569175652 8.975173594 8.29852759 8.99537792 8.527259526 8.117836804 8.46725774 159038903 TerC Metal Resistance Tellurium Salinispora arenicola CNS-205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 8.869858563 8.751915202 8.524183594 8.117149809 8.31288836 8.408687701 8.480173183 7.833279571 8.841817327 8.385887771 8.36857758 8.466065312 47078061 xylF Organic Remediation Aromatics BTEX and related aromatics Pseudomonas sp. ST41 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.409836548 8.085679562 8.521353387 8.11365311 8.014158559 7.841833491 8.215955665 7.863233726 8.081986793 7.938583482 7.839564297 8.071769535 163838805 mer Metal Resistance Mercury Renibacterium salmoninarum ATCC 33209 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Renibacterium;species:Renibacterium salmoninarum; 8.583430411 8.644303981 8.75451142 8.083401176 7.422009369 8.041171961 7.610300903 7.397919108 7.607350374 7.985137729 8.12284478 221734297 ChrA Metal Resistance Chromium Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 8.138987096 8.043027494 8.383098739 8.207409779 8.166242983 7.936389402 8.044687595 8.149705941 8.121228005 8.184851995 7.66174633 167667199 fnr Stress Oxygen stress Anaerotruncus colihominis DSM 17241 8.354928668 8.525782552 8.776023552 8.333288311 8.319969279 8.222024677 8.130062717 8.058079728 8.12503767 8.144343961 8.102020032 8.363992209 77820032 nirS Nitrogen Denitrification uncultured organism 8.692055208 8.369054636 8.373872683 8.581423981 8.249234645 8.536788986 8.569866204 8.359464354 8.373273939 8.399865564 8.055889318 153003824 cytochrome Energy process Energy process Anaeromyxobacter sp. Fw109-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 8.234109366 8.193870138 8.219564889 8.221358596 8.008090492 8.130395164 8.059049697 8.406827233 8.313852998 8.303412139 8.154847921 188481105 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 8.520490352 8.88811084 8.865375549 8.613983594 8.742960986 8.684061923 8.830703238 9.037962749 8.740561426 9.183109094 8.912802542 8.665423596 220718747 oxdB Organic Remediation Aromatics Nitoaromatics Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 9.108098341 9.22567077 8.958476456 8.994465548 9.289168292 9.429954884 9.472247162 9.501116994 9.596726915 9.450297911 9.580020081 9.44758403 237499656 arcA Stress Oxygen limitation Tolumonas auensis DSM 9187 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Tolumonas;species:Tolumonas auensis; 9.420534594 9.184138583 8.866632692 8.665758408 8.923592725 9.244655145 8.96681751 9.103067084 8.958200312 9.232708821 9.001043456 27353867 nagG Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 9.687254296 10.41233466 9.997944906 10.48437659 10.44568837 10.49755786 10.17845208 10.77839881 10.08257483 10.49066303 10.57455096 256789448 B_lactamase_A Antibiotic resistance Beta-lactamases Streptomyces lividans TK24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces lividans; 9.646105873 9.042616095 8.685601846 10.01710359 9.809764194 9.726328392 9.891825698 9.789308376 9.370400006 9.517402998 9.433178926 144943179 CopA Metal Resistance Copper Geobacter bemidjiensis Bem 8.263934208 8.285953763 8.619701355 7.73052193 7.836945411 7.886214411 7.99224821 7.77603754 7.817722658 7.606119727 8.041121763 227295586 cda Carbon cycling Carbon degradation Starch Laceyella sacchari 9.192696027 9.225273678 9.198461603 8.8993001 9.01656168 8.833562949 9.045409481 9.311161121 8.866058997 9.250685993 9.219827994 9.35932615 133778530 endochitinase Carbon cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 9.216182711 8.503572218 8.525051559 8.470804386 8.388065484 7.957763292 8.323746048 8.389731928 8.408673184 8.246449938 8.249004971 7.978281726 190574354 mer Metal Resistance Mercury Stenotrophomonas maltophilia K279a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 9.275715119 9.381461414 9.198191647 9.002491211 8.86112848 8.687421775 8.776083168 8.511769402 9.016863004 8.678571359 8.954964619 8.912931909 206738212 pstB Stress Phosphate limitation Coprothermobacter proteolyticus DSM 5265 8.94645563 9.048062715 8.682463551 8.157031421 8.149383776 8.235278107 7.822117464 7.834145745 8.242965645 7.967065506 8.06376698 8.202467183 256558203 xylA Carbon cycling Carbon degradation Hemicellulose Brachybacterium faecium DSM 4810 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermabacteraceae;genus:Brachybacterium;species:Brachybacterium faecium; 9.386867058 9.261895514 9.135671357 9.685031208 9.585588535 9.427036683 9.485848287 9.550146558 9.422054704 9.698995546 9.674857491 9.258660018 121708796 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 9.30057896 9.23677404 9.457850402 8.782452474 8.649469687 8.562250156 8.184780897 8.182471176 8.490430637 8.511341564 8.603446605 197790724 CusA Metal Resistance Copper Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 9.031552564 8.724089594 8.72153142 8.853412033 8.893510598 8.906995932 8.920254355 8.850310276 8.827999858 8.7913457 8.822720796 8.723233481 163746354 phoB Stress Phosphate limitation Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 8.406481808 8.152674843 8.448324793 8.361976854 8.385072538 8.120727921 8.64827408 8.33178411 8.449912292 8.534777948 8.051972554 261364055 hly virulence hemolysin Neisseria mucosa ATCC 25996 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria mucosa; 9.582577823 9.545638068 9.861048786 9.047643617 9.086903363 8.981488583 8.931532038 8.89647788 8.872718245 8.972374231 8.811334139 9.212695972 148502944 vanA Carbon cycling Carbon degradation Others Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 9.589813305 9.544618039 9.537939856 8.85390758 8.851549412 8.914414886 9.027772488 8.724330443 9.071254676 8.769120666 8.793713676 9.073018152 116121017 sigma_70 Stress Sigma factors Leptospira borgpetersenii serovar Hardjo-bovis L550 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira borgpetersenii; 8.086449181 8.114471058 8.368385313 84517005 pcaG Organic Remediation Aromatics Other aromatics Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 9.395125024 9.454095072 8.96289725 8.38175809 9.008202894 9.305002662 9.101510799 9.482829083 9.070474546 9.256157488 9.027044293 218093402 cda Carbon cycling Carbon degradation Starch Thermococcus kodakarensis KOD1 8.05758965 8.013100075 8.172579164 7.221328076 7.540056386 7.208032836 7.028566632 7.615049792 7.177895838 7.063093166 7.535853327 160362410 fnr Stress Oxygen stress Delftia acidovorans SPH-1 8.373941934 8.393910711 8.435898879 8.121993182 8.320968308 8.476354269 8.463352533 8.383878648 8.666936045 8.119732803 7.851057881 8.145569702 76058261 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.006182093 7.82650461 6.763300178 7.257200142 6.850447933 7.380132618 6.999329227 7.480274009 114321873 alkH Organic Remediation Other Hydrocarbons Alkalilimnicola ehrlichei MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 7.955274291 7.887204329 7.986630878 7.924558503 8.192168358 8.075298684 8.030641396 7.982083398 8.150446541 164642394 glnA Stress Nitrogen limitation Laccaria bicolor S238N-H82 7.214254346 6.997504611 7.148991284 6.861597131 7.056330935 7.164977261 148499866 bphA Organic Remediation Aromatics Polycyclic aromatics Sphingomonas wittichii RW1 8.290530894 8.294170389 8.227590728 8.188972062 8.174299932 8.145331426 8.198315708 8.049062517 8.373836296 8.475582001 8.589024692 8.303708017 229362693 iro virulence Pseudomonas fluorescens SBW25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.633301204 8.689442701 8.422531008 8.566838666 8.577464397 8.249283286 8.236607091 8.80504887 8.484446082 8.778161084 8.728974396 8.713201951 14024421 Arylest Organic Remediation Aromatics Other aromatics Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 8.782293291 8.494566059 8.767832484 8.60945703 8.525452965 8.440394685 8.446968042 8.654562602 8.516783163 8.439286497 8.290319893 8.510137075 148260678 ATP_synthase_F1_or_F0 Bioleaching other category Acidiphilium cryptum JF-5 8.923853832 8.893639534 8.53912816 8.37966745 8.273310935 8.299991292 8.731162907 8.437919474 8.507168883 8.29443324 8.411748274 8.477950629 214045309 akbF Organic Remediation Aromatics BTEX and related aromatics Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 9.123584131 8.848122078 8.891977071 8.786542846 8.429631695 8.245605871 8.346953461 8.114702486 8.714412175 8.468884795 8.388488089 8.482009533 227843937 opuE Stress Osmotic stress Mobiluncus mulieris ATCC 35243 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus mulieris; 8.663778108 8.435088323 8.182975347 8.211788887 8.184851757 8.018892686 7.917537269 8.123161236 7.903146906 7.943034411 8.311431095 157960169 cytochrome Energy process Energy process Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 8.939337283 8.620812806 9.037768569 9.003173193 8.830858065 8.590087956 8.830404849 9.320456446 8.554014796 9.241082993 8.994472627 9.28333701 68135517 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.267001168 7.988605518 8.141404076 7.498048492 7.431298766 7.415848317 7.185612742 7.066523024 7.65283512 7.321755385 7.27724473 7.548386298 158312955 fnr Stress Oxygen stress Frankia sp. EAN1pec 8.406913896 8.581452122 8.572782118 8.500356548 8.111209395 8.088645498 8.43362668 8.34471103 8.463610551 8.385841592 8.316155634 8.064954763 99030517 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 9.509182095 9.348270429 9.637757955 8.748154641 8.642587617 8.579517525 8.314892275 8.502431253 8.444301994 8.515286918 8.57396293 8.991234173 76801449 nirK Nitrogen Denitrification Natronomonas pharaonis DSM 2160 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natronomonas;species:Natronomonas pharaonis; 8.959781571 9.151899179 8.840653104 9.192005424 9.343706124 9.609793634 9.703261705 9.71808841 9.576390629 9.565734228 9.732183012 9.555955253 259506199 cydA Stress Oxygen limitation Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 8.545115312 9.255380216 8.862418484 8.289549258 9.108627464 9.506562916 9.075694734 9.2634876 8.807402787 8.583056768 8.937750781 71848478 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 8.697225568 8.44634234 8.360253571 8.039550134 8.174093256 8.31832066 8.478951359 8.157860707 8.255771522 8.300025163 8.344332187 125997398 type_III_secretion virulence secretion Shewanella baltica OS155 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 9.554304988 9.566609055 9.583778646 9.06030401 8.988140738 8.925339268 8.456962136 8.924127526 8.828155265 9.027939897 9.072662654 196232607 ureC Nitrogen Ammonification Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 8.612538423 9.116702781 8.999840319 8.450873609 8.342714056 8.087181455 8.195988749 8.857217565 8.325322069 8.641450122 50954716 gyrB other category gyrB Leifsonia xyli subsp. xyli str. CTCB07 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Leifsonia;species:Leifsonia xyli; 8.794442017 8.803797514 9.020833034 8.121210386 8.224060085 8.436239519 8.323498366 8.179200443 8.452609283 8.229122838 8.210758198 8.556072099 194307030 DNA_ligase Bacteria phage REPLICATION Morganella phage MmP1 order:Caudovirales;family:Podoviridae;genus:T7-like viruses; 7.380578151 7.204558323 7.483800458 7.664508477 7.209203016 7.896727621 7.279174933 7.199724079 7.40819676 218525599 pulA Carbon cycling Carbon degradation Starch Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 8.784870214 8.936052692 8.404096073 8.153756917 8.258204801 7.794024731 8.079637438 8.115429578 7.911818856 8.094210448 156934049 B_lactamase_C Antibiotic resistance Beta-lactamases Enterobacter sakazakii ATCC BAA-894 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 8.460586596 7.80119861 8.50688122 7.828114656 8.505350132 8.148986344 8.331033342 7.798335443 34102076 MFS_antibiotic Antibiotic resistance transporter Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 8.91230525 9.23113193 8.839081882 8.474004895 9.458284544 9.697401692 9.152305248 9.630674776 9.280367073 9.080507251 9.193949357 73539944 MFS_antibiotic Antibiotic resistance transporter Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.726751587 8.655145624 8.672078054 8.944531824 8.674003384 8.497776648 9.429088255 9.008775314 29652600 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.120199126 8.045542872 7.485501386 7.772708093 7.719752372 7.597828441 7.409319129 7.859909993 7.501417501 7.300398996 7.407882883 8895171 initiator_protein__theta_replication Bacteria phage REPLICATION Pseudomonas phage D3 order:Caudovirales;family:Siphoviridae; 9.455666369 9.574566551 9.44965661 9.026489345 8.831057629 8.65036081 8.779815378 8.707271114 8.785928881 8.735302378 8.697615005 8.974645076 23494737 pcpE Organic Remediation Herbicides related compound Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 8.885281965 8.956694668 8.982840004 8.61540944 8.668142086 8.636798493 8.699883866 8.916840758 8.516235548 9.147214236 8.758920727 8.894349328 242238118 pilin virulence pilin Dickeya dadantii Ech703 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 9.65203995 9.532754335 8.875994975 8.806767541 9.073469535 112463099 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.393411211 7.135750686 7.571097975 7.226074521 7.048519572 7.881907787 6.808861912 7.113664689 7.460064265 119962709 CopA Metal Resistance Copper Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 8.324416827 8.299552093 8.26763076 8.24372861 8.202290204 8.082708801 8.203623383 8.609516991 8.365187636 8.305000777 8.108289711 8.247136512 160934974 pstB Stress Phosphate limitation Clostridium leptum DSM 753 8.861765867 8.737513917 8.699955809 8.674122288 8.830291401 8.558608126 8.405228836 8.813238415 8.412883646 8.641671903 8.384585344 8.721506006 166860843 iro virulence Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 9.17369415 8.950655338 8.968050428 8.643824427 8.317762678 8.141841566 8.143020347 8.50856382 8.382504886 8.488875248 8.600127899 8.579599918 29293252 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.623424634 8.693693624 8.553669721 8.130046575 8.035963594 7.976207219 8.100086624 7.905913069 8.163042173 7.630333685 7.959003902 8.213503939 85723115 sigma_70 Stress Sigma factors Syntrophus aciditrophicus SB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Syntrophus;species:Syntrophus aciditrophicus; 7.356141992 7.262280459 7.381920716 7.230397215 7.274294975 7.524676176 7.1944129 7.539722254 258405077 arsM Metal Resistance Arsenic Desulfohalobium retbaense DSM 5692 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium;species:Desulfohalobium retbaense; 7.886217823 7.8529535 7.777752886 7.499087216 8.073731556 7.657687619 7.863630165 7.573600103 7.72679274 110819504 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 9.32678109 9.31168035 9.365867146 9.430476796 9.978736812 9.442080033 9.371693178 9.925768204 9.090409809 9.6479936 9.494668117 9.643529477 89045295 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Oceanicola granulosus HTCC2516 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 8.768694395 8.787982526 8.880220416 8.591381111 8.63681861 8.398978204 8.405846798 8.182879267 8.534168024 8.349220281 8.407811314 8.499679775 85108201 nagG Organic Remediation Aromatics Aromatic carboxylic acid Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 8.340759762 8.241621415 8.532057751 7.945176924 7.534580266 7.653427324 7.151790559 7.254710647 7.594806771 7.389126411 7.535275161 218761774 pcc Carbon cycling Carbon fixation Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 8.412286044 8.04452447 8.449752455 7.783765269 7.58543041 7.723051538 8.071916911 7.629786572 8.325444784 7.841969767 7.817464133 7.784527891 260185713 pstB Stress Phosphate limitation Mycobacterium tuberculosis CPHL_A 8.089606642 7.783328814 7.608475873 7.762476504 7.648920005 7.970786371 7.616471158 7.481767307 7.550831108 66474609 gyrB other category gyrB Aeromonas punctata superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas; 9.055070402 9.257857425 9.083319764 8.260947634 8.789341694 8.796016481 9.117913688 8.186679372 9.140549653 8.384253377 8.550187206 8.568784914 50725019 arhA Organic Remediation Aromatics Heterocyclic aromatics Sphingomonas sp. A4 8.169137862 8.184462277 8.224765546 7.85822116 7.831987412 7.821302216 7.734570214 8.022927782 8.046957891 7.96739452 7.902350408 7.930573166 262206499 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 8.742600375 8.619441249 8.568394819 8.175631286 8.119845793 8.046005637 7.803092155 7.798742993 8.115060431 7.896586512 7.819571985 8.157348045 257168732 pstB Stress Phosphate limitation Halomicrobium mukohataei DSM 12286 8.620562879 8.520132881 8.617174075 8.253108002 7.917439315 7.976729201 7.939715605 7.817469563 8.081761042 7.76297721 7.819267941 7.973732004 256653704 ahpC Stress Oxygen stress Acetobacter pasteurianus IFO 3283-12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pasteurianus; 8.210785543 8.048445168 7.08121665 7.45999049 7.373477543 7.348484515 7.432453179 6.915787828 6.935682137 7.197806512 117647892 clpC Stress Protein stress Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 8.438157463 8.3865602 8.546835921 8.259985057 8.86532403 8.534524794 8.682792651 8.658205345 159179144 B_lactamase Antibiotic resistance Beta-lactamases alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 9.222216459 9.129999429 9.038175322 8.916620368 8.800300495 9.111253996 9.231598074 9.028327702 9.383286426 9.102426454 9.170760669 9.231654814 159041427 dsrB Sulphur sulfite reductase Caldivirga maquilingensis IC-167 8.138180062 7.948944465 8.483752774 7.863585659 7.430205095 7.487153224 7.793386149 7.372491176 7.645984142 7.416833057 7.600995697 7.717611899 118616838 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 8.730713495 8.645306067 8.510068032 8.809602307 8.839201209 8.80807447 8.436383646 8.69605248 8.76832018 8.40979398 237809745 sigma_32 Stress Sigma factors Tolumonas auensis DSM 9187 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Tolumonas;species:Tolumonas auensis; 7.400478474 7.42268716 7.608738296 7.717974593 6.916212863 6.988694651 7.530992233 7.726719357 68199429 CopA Metal Resistance Copper Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 10.45268016 10.29531 10.34194433 9.612674113 9.932780811 10.24830569 10.79013366 9.630973817 10.8325534 9.880829733 10.03574783 9.949563863 224609582 pilin virulence pilin Thioalkalivibrio sp. K90mix superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 7.882125528 7.605211167 6.900563517 7.716221798 7.346604066 7.452172758 124488109 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 8.840110239 8.696442236 8.630837418 8.57441045 8.336195292 8.448082033 8.176026669 8.40541584 8.249757669 8.377379337 8.36112967 8.803144849 225412254 sigma_24 Stress Sigma factors Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 8.767988071 8.983605134 9.041061924 8.197962413 8.297667935 8.308947632 8.075558369 8.125141753 8.256993223 7.946651224 8.338235252 148261538 UDS_EPS Bioleaching EPS Acidiphilium cryptum JF-5 8.723076031 8.481473754 8.071922229 8.737388018 8.729619867 8.406370003 8.316326248 8.596303035 8.463954775 8.49535756 8.454670714 7.918324023 123966236 glnA Stress Nitrogen limitation Prochlorococcus marinus str. MIT 9515 8.559439442 8.132172831 8.44965539 7.853796281 7.752766773 7.798770754 7.641093475 7.516155072 7.603222296 7.590314038 7.858396722 163668699 atzA Organic Remediation Herbicides related compound Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 9.428205991 9.432300566 9.727669925 8.747636614 8.879697706 8.698859483 8.59996253 8.556647829 8.541335506 8.780031594 8.842839728 9.138329039 271968332 sigma_70 Stress Sigma factors Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 9.34941562 9.06414078 9.386445635 8.408102278 8.432525314 8.245273604 8.623557877 8.247816011 8.411441686 8.293335445 8.341668276 8.851056233 145556742 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 8.964133898 8.972486381 9.106228581 8.252224124 8.313908737 8.390693975 8.379308936 8.214889423 8.262627777 8.125227624 8.572746032 78518710 Xamo Organic Remediation Other Hydrocarbons Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.317981446 8.051620745 8.465138896 8.120424628 7.676131924 7.627094152 7.542543043 7.472786464 7.928732188 7.478992159 7.61175159 7.694138791 81254045 ureC Nitrogen Ammonification Mycobacterium tuberculosis C superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 9.867616364 9.890712454 10.11780298 9.271141437 9.107058853 9.035273497 9.334217407 8.830426967 9.323802868 8.959524047 8.98844001 9.282399154 51854833 gyrB other category gyrB Symbiobacterium thermophilum IAM 14863 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVIII. Incertae Sedis;genus:Symbiobacterium;species:Symbiobacterium thermophilum; 10.42368928 10.41692838 10.41776942 9.983060585 9.971960963 10.00077222 9.733876008 9.865362487 10.17652807 10.07398653 10.2641942 10.32048942 157804818 APS_AprB Sulphur adenylylsulfate reductase Thiocapsa roseopersicina superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa; 8.38390577 8.725190509 8.990515893 8.004465717 7.757989409 7.899988509 8.242231996 7.923991435 8.582132112 7.715927426 7.935574217 7.740032886 146410882 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.9502161 8.402343618 9.05061445 8.87439395 8.984152178 8.699527223 8.977922216 8.582914952 8.864440281 9.022311887 8.408430884 210613789 nplT Carbon cycling Carbon degradation Starch Clostridium nexile DSM 1787 9.080855711 8.827573526 8.561966933 8.182918015 7.912480824 8.037180219 7.967338099 8.202034513 8.33913835 117988217 dehH109 Organic Remediation Chlorinated solvents Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8.483929268 8.328632359 8.173005881 7.977398357 7.655589674 7.809783278 7.904416256 7.983400299 7.91103992 7.837838691 152989419 cytochrome Energy process Energy process Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.177245779 8.055605815 8.254393458 8.396320164 7.962899378 7.630121315 7.93791206 8.099449723 8.290280388 8.015495268 8.213568873 7.676777156 258596677 Tet Antibiotic resistance other Desulfurivibrio alkaliphilus AHT2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfurivibrio;species:Desulfurivibrio alkaliphilus; 8.262050752 8.300475626 8.382614423 7.771652131 7.775813203 7.599995932 7.37860828 7.15232507 7.766964328 7.483413804 7.455919526 7.560816745 269967722 iuc virulence aerobactin Vibrio alginolyticus 40B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 7.566358908 7.442207693 7.294832125 197930649 endoglucanase Carbon cycling Carbon degradation Cellulose Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 8.502849556 8.714703406 8.691364029 8.379800663 8.142844143 8.031556848 8.67505221 8.452385636 8.709121132 8.201009272 8.110330788 8.175822121 226284896 ara_fungi Carbon cycling Carbon degradation Hemicellulose Paracoccidioides brasiliensis Pb01 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides;species:Paracoccidioides brasiliensis; 9.139787412 8.37353822 8.551129203 8.599967186 8.089005967 8.152748757 116748153 phoB Stress Phosphate limitation Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 8.831671288 8.420399423 8.511313508 8.402028819 8.295609233 8.318335111 8.044311068 8.369207899 8.464383047 8.446450225 8.390050996 8.379964481 108769877 tfdA Organic Remediation Aromatics Chlorinated aromatics Mycobacterium sp. MCS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.570334591 8.789228955 8.996474539 8.405270223 8.235547352 8.94032195 8.770406738 8.481298845 8.787961881 8.466982348 8.727523876 8.663356954 47680331 rubisco Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.653324724 8.323290485 7.714139218 8.1300953 8.071192413 8.173345399 7.603953587 8.076720242 7.95215055 8.125158464 8.097534655 114766240 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 9.69282069 9.60519321 9.774255734 9.070517157 8.920417595 8.715415872 8.647155044 8.771434126 8.955882615 8.821510146 9.208046641 229590767 pstB Stress Phosphate limitation Pseudomonas fluorescens SBW25 8.443612292 8.713976682 8.4900451 8.665750915 9.395143959 8.835925011 8.713210857 9.220037603 8.325079951 8.926042128 8.839069503 9.250674973 225792253 cda Carbon cycling Carbon degradation Starch Acidobacterium capsulatum ATCC 51196 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteria;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 8.750309601 9.059959926 8.931298712 8.064445128 8.061217757 7.944425747 7.829378415 7.953306409 7.85604528 7.948830669 7.844370808 8.195982569 159046058 BchY other category chlorophyllide reductase Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 8.96708872 8.64467875 8.555267187 8.67560169 8.226121593 8.568592022 8.841904404 8.494633728 8.33664164 8.318959041 8.394008023 8.216478623 120553592 sigma_70 Stress Sigma factors Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 8.688741901 8.783882002 9.045254672 8.797876043 8.83314962 8.53926206 8.883945509 9.475591355 8.795817793 9.286518948 9.101314827 9.362227211 149376272 pcaG Organic Remediation Aromatics Other aromatics Marinobacter algicola DG893 8.414817028 8.421426046 8.395573081 7.90752645 7.719465183 7.744211126 7.384624283 7.45719426 8.001808889 7.818305191 7.653205621 7.819357589 162286977 ppk Phosphorus Phosphorus utilization Pseudomonas syringae pv. tabaci superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas amygdali; 8.550834478 8.285587562 8.243506785 8.064396153 7.756697755 7.753143933 8.133880011 8.161623291 8.020183097 8.133178625 8.195025051 260606211 iuc virulence aerobactin Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 8.332502969 7.863800704 8.316154555 7.377243855 7.064071813 7.365517272 7.182690509 7.185194302 7.471533858 113525667 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.573411974 8.81472556 8.788616563 8.534511927 8.379987467 8.300426006 8.308499467 8.162939587 8.35886932 8.137540005 8.160497342 8.307719308 66351659 oxdB Organic Remediation Aromatics Nitoaromatics Agrobacterium tumefaciens superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 8.453127588 8.509758508 8.289932269 8.650895283 8.443705853 8.214391909 8.563213926 8.447610434 8.472639508 8.686758277 8.943242908 8.117497756 169845834 xylanase Carbon cycling Carbon degradation Hemicellulose Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 8.372961967 8.189238241 8.489989987 8.853444531 8.251975277 8.355957048 8.252707977 8.363825431 158522775 proV Stress Osmotic stress Desulfococcus oleovorans Hxd3 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus;species:Desulfococcus oleovorans; 9.32851541 9.529965711 8.865995528 8.746233753 8.572152627 8.437321154 8.301304157 8.457061305 8.410934404 8.72498591 115260385 linB Organic Remediation Pesticides related compound Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.471072507 8.522400622 8.812096561 8.199869818 8.069654458 8.141846961 8.185236615 8.014195911 7.956133817 7.99624021 8.163531919 8.148450468 21107756 pstB Stress Phosphate limitation Xanthomonas axonopodis pv. citri str. 306 9.520501704 9.159122246 9.087110782 8.77326907 8.627246258 8.434253107 8.772220826 9.101743755 8.924895135 9.126792004 9.171630784 9.124666682 114706754 AceB Carbon cycling Carbon degradation others Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 8.768031061 8.832436173 8.675428654 8.653197196 8.84135103 8.632796713 8.447860849 8.808217675 8.54595516 8.813434876 9.099736504 8.2587057 14025262 ChrA Metal Resistance Chromium Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 9.870131794 9.932522665 9.424541349 9.30364248 9.125194587 9.259007361 9.337015547 9.044289518 9.532082356 9.041594934 9.301483345 9.062862077 158312688 hly virulence hemolysin Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 9.093953505 9.155966784 8.977637739 8.240475115 9.072602513 9.128817691 9.491807555 8.441377268 9.348494559 8.751611154 8.548596973 8.798473575 67986671 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 8.251725833 8.076745748 7.638735965 8.082928961 7.7365357 8.14016735 7.990212618 8.150484548 7.976656178 8.208618486 8.296197657 15679723 pstB Stress Phosphate limitation Methanothermobacter thermautotrophicus str. Delta H 7.966964688 7.91242842 7.218948667 7.440362382 7.317606387 7.240091893 7.460781192 7.031424095 7.229851727 7.144092414 239980539 pstB Stress Phosphate limitation Streptomyces albus J1074 8.689868594 8.768724052 8.867272303 8.837141055 8.784401254 8.954737008 52422182 CopA Metal Resistance Copper Burkholderia mallei ATCC 23344 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia mallei; 8.41707115 7.972348719 8.145271409 8.011840509 8.122363447 7.65504906 7.894290577 8.224365902 7.553188029 8.114286195 7.718728197 126175709 cytochrome Energy process Energy process Shewanella baltica OS155 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 8.856423193 8.327113687 8.455805652 9.274030738 9.020098113 8.928212413 9.069581967 8.978861296 8.958834339 9.057196284 9.012283265 8.846904534 156572306 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 9.544800072 9.561709374 9.646406758 8.997811696 8.826318876 8.818284909 9.515266412 8.971122943 9.71159918 8.760756355 8.955243236 8.759067009 237624518 fnr Stress Oxygen stress Thauera sp. MZ1T 8.604597367 8.890267372 8.805248828 8.761674681 8.728669747 8.987738294 9.191004824 8.776641477 9.314401291 8.87083474 8.818010247 78498061 katE Stress Oxygen stress Sulfurimonas denitrificans DSM 1251 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Sulfurimonas;species:Sulfurimonas denitrificans; 8.700478063 8.658753082 8.984454343 8.207667594 8.132757491 8.01611016 7.587333621 7.485186232 8.319344383 8.112383753 8.164437966 7.939246382 21242623 pimF Organic Remediation Aromatics Aromatic carboxylic acid Xanthomonas axonopodis pv. citri str. 306 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas axonopodis; 9.124130794 9.229674999 9.282124978 8.495725754 8.685611847 8.949061936 9.347643305 8.625518267 9.216067543 8.601921227 8.604937753 8.662024802 111225418 TerZ Metal Resistance Tellurium Frankia alni ACN14a 8.596636531 8.559648012 8.315650102 8.780676829 9.019677905 9.076933637 8.989063088 9.297214361 9.133638197 9.092154386 9.122799149 9.03842228 116623106 ara Carbon cycling Carbon degradation Hemicellulose Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 8.3992588 8.588913489 8.853158516 8.042264527 7.953243453 7.969490555 7.847186097 7.884978722 8.203389683 8.134641224 8.02050976 8.110160631 77685714 FTHFS Carbon cycling Acetogenesis Alkaliphilus metalliredigenes QYMF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus metalliredigens; 9.037417194 8.785391974 8.827360395 8.383271983 8.266364973 8.248625338 7.892616808 7.753985588 8.148824494 8.049269416 8.512902191 157911536 AceB Carbon cycling Carbon degradation others Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 9.051268435 8.916301722 8.858221633 8.323996126 8.35327725 8.227377254 8.339663528 8.364154735 8.600204122 8.471487249 8.292940952 8.468302941 226319739 Tet Antibiotic resistance other Deinococcus deserti VCD115 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 9.427402404 8.942636984 8.94922493 8.574333661 9.277795543 8.547743204 8.524922851 8.767232977 9.208012709 9.450208738 8.89515493 167577678 MFS_antibiotic Antibiotic resistance transporter Burkholderia thailandensis TXDOH superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 8.349770676 8.342021361 7.697257201 8.02370897 7.954485392 8.16993637 7.690506393 8.332610332 7.877935456 7.814714123 8.05126699 66474833 cmuA Organic Remediation Chlorinated solvents uncultured bacterium superkingdom:Bacteria; 7.745444186 8.107564284 7.68070517 7.752051103 8.021725908 8.180318501 8.060207341 8.190086106 8.242242693 8.052922409 8.222675705 156523572 todC Organic Remediation Aromatics BTEX and related aromatics uncultured bacterium 8.835262254 8.51321611 8.214096726 8.47638682 8.251728793 7.996408469 8.371256395 7.840978639 8.240726375 8.427756706 8.385537712 241363906 ureC Nitrogen Ammonification Acidovorax delafieldii 2AN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax delafieldii; 8.42753224 8.6296913 9.217489507 8.863805902 8.749096859 8.312723876 8.718384794 9.109128942 8.92523291 8.695453128 8.650384284 8.999827872 17430371 ZntA Metal Resistance Zinc Ralstonia solanacearum GMI1000 8.23948119 8.460929388 8.15158824 8.846979181 8.629654157 8.138764651 8.57838268 8.515813944 8.441011736 8.608200098 8.674839338 8.285491392 111019004 alkK Organic Remediation Others Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 9.240240245 9.42987319 9.259131987 9.172423158 9.124660443 8.93640357 9.205857723 9.407417481 9.036980578 9.478715709 9.100106783 9.206146212 238547240 narH Stress Oxygen limitation Klebsiella pneumoniae NTUH-K2044 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 9.324085864 9.031633043 9.12857507 8.576850884 8.887010485 8.905105971 9.21013023 8.070619208 9.118958959 8.575302863 8.741295192 8.692305562 77686324 nifH Nitrogen Nitrogen fixation Alkaliphilus metalliredigenes QYMF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus metalliredigens; 9.302287283 8.94640643 9.656160007 8.606084931 8.592850423 8.568537356 8.410925476 8.141756016 8.68083386 8.410372203 8.348354791 8.7828951 55232713 catB Organic Remediation Aromatics BTEX and related aromatics Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 9.802424746 9.794781133 9.385081981 9.097444043 8.751998829 9.496928652 9.866984145 9.470964177 9.279243647 9.221457189 9.334622716 9.127258962 34332998 DNA_polymerase_type_I Bacteria phage REPLICATION Bacteriophage KVP40 order:Caudovirales;family:Myoviridae;genus:T4-like viruses;species:Vibrio phage nt-1 sensu lato; 9.129803509 8.736236571 8.969835726 8.505394496 8.24564681 8.294790536 7.760218902 7.770048526 7.787627879 7.976657504 8.34803931 260418645 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 8.260204625 8.134483818 7.943576749 7.686785751 7.695717827 7.630876575 7.714676396 8.102192321 7.771218248 7.602177079 7.7116548 261339928 vip virulence virulence protein Enterobacter cancerogenus ATCC 35316 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 8.003115715 7.87217716 7.551318134 7.929281018 7.624997602 7.851545348 7.677155789 7.653020813 7.517190611 51891726 sigma_32 Stress Sigma factors Symbiobacterium thermophilum IAM 14863 9.605411677 9.607230633 9.580687563 10.00753967 9.922952525 9.121589504 9.654973035 9.688778879 258555465 sigma_24 Stress Sigma factors Nakamurella multipartita DSM 44233 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 9.4686235 9.478217174 9.55638529 8.557790611 8.445726487 8.57749551 8.349847585 8.347922265 8.48790864 8.484930669 8.587813425 9.002282311 116671523 cellobiase Carbon cycling Carbon degradation Cellulose Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 9.605127084 9.228564318 9.02637629 9.42588829 9.502801299 9.372813455 9.157781926 9.720027381 9.073300822 9.346673981 9.388353367 9.879883753 104773389 fnr Stress Oxygen stress Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 8.999715731 8.917547553 8.957329673 8.113327684 8.007411397 8.110081719 8.245887035 8.087268781 8.362956935 8.101021264 7.855721206 8.337503264 51987928 gyrB other category gyrB Pseudomonas anguilliseptica superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.253522302 7.164320801 111021480 atzB Organic Remediation Herbicides related compound Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.594519446 8.321089831 7.820186537 7.602448312 7.738607085 7.842919706 7.838437384 118437987 AceB Carbon cycling Carbon degradation others Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 8.550628346 8.71873805 8.24874026 8.684439982 9.020238248 8.5704307 8.797935441 8.786781551 8.287984161 8.65546679 8.373845428 163698273 vanA Carbon cycling Carbon degradation Others Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 9.174611024 9.314561039 9.09402462 9.124839761 8.869641818 8.71647392 9.144643901 9.003570509 8.894073383 9.073693674 8.965955438 8.849416125 255328041 grpE Stress Heat shock Propionibacterium sp. oral taxon 191 str. F0233 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acidifaciens; 8.461451833 8.618312147 8.432304251 8.023426235 7.650267192 7.837803169 7.44439594 7.557084577 7.818669411 7.833198849 8.034469784 67933455 CODH Carbon cycling Carbon fixation Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 8.950313385 8.916791183 9.037307718 8.347708958 8.076252867 8.139942435 8.05283866 7.812075491 8.126267627 7.999292863 8.253158957 118685888 pmdAB Organic Remediation Aromatics Others Marinomonas sp. MWYL1 8.154073981 8.30847436 8.591712178 7.89641265 7.944221388 7.629190756 7.684127433 7.988152441 8.251897112 8.066523281 7.665630561 7.975804572 29609466 TerZ Metal Resistance Tellurium Streptomyces avermitilis MA-4680 8.571237604 8.730171977 8.183534825 8.489050869 8.088574951 8.17859181 8.230769723 8.367176838 8.036906758 8.474647603 88810793 mer Metal Resistance Mercury Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 7.672001814 7.507943244 7.402504087 7.379787371 7.273387486 7.381671389 40253086 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.553693931 7.348371693 7.690797812 7.559849538 7.534036144 7.746048855 7.419596998 7.55946487 7.522725986 116223022 hrcA Stress Heat shock Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 9.670324379 9.651076232 9.742959143 9.030458022 8.913563487 8.886096523 8.750887964 8.532350348 8.61909936 8.696696499 8.868839074 9.243058656 769811 B_lactamase_C Antibiotic resistance Beta-lactamases Lysobacter lactamgenus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Lysobacter; 8.33315807 8.293900139 8.315105024 7.265523636 7.50107434 8.125857009 8.038763122 7.661292992 8.326415702 8.010275151 7.923781173 7.91757657 209500407 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.203173126 8.062438832 7.682978772 8.116120455 7.914441986 7.704692543 7.967154273 8.024907749 7.803325059 7.886674746 8.260544404 187726416 PobA Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.592185465 8.766683417 8.576404089 7.859319803 8.023753058 8.336821336 8.709370138 8.225474022 8.750173428 7.961465175 8.353780485 7.843212709 221730703 iro virulence Diaphorobacter sp. TPSY superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax ebreus; 9.329199196 9.336952396 9.525509324 9.066953231 8.921844109 8.975580208 8.794398398 8.847205575 8.819373711 8.860693516 9.047595792 9.216768381 84709993 TerZ Metal Resistance Tellurium Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 7.796709898 7.749009774 7.222337687 7.51834294 7.155925969 7.793217194 7.545348994 7.581861583 27529597 dehH109 Organic Remediation Chlorinated solvents uncultured bacterium superkingdom:Bacteria; 8.60859739 8.543543275 8.631698543 8.6138076 8.354844858 8.162702998 8.593502184 8.341926944 8.512995782 8.413921587 8.097178387 8.210228172 14024489 linB Organic Remediation Pesticides related compound Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 8.994541539 9.176748784 8.446774022 8.677793503 8.762990909 9.045718462 9.467394117 8.805525499 8.694740358 8.594886407 8.93174094 8.445016229 154156267 sigma_24 Stress Sigma factors Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 9.474757845 9.272726492 9.08644336 8.955755987 8.875600525 8.607875595 9.033475135 9.031094886 8.85814353 8.913173594 8.875221813 8.679495833 71383852 nasA Nitrogen Assimilatory N reduction uncultured bacterium superkingdom:Bacteria; 8.717432289 8.583430881 8.204963547 8.263312867 8.159269609 7.958793409 7.991938258 7.749090229 7.787822531 119899208 pilin virulence pilin Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8.608359575 8.374625799 8.130568456 7.504158358 7.65208167 8.206394862 7.990461306 7.938066977 7.485659118 7.433735138 7.526028731 29829537 tfdA Organic Remediation Aromatics Chlorinated aromatics Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 9.030636341 8.690215899 9.078884187 8.561011535 8.29373525 8.188837267 8.229617264 8.184505476 8.340812213 8.59726691 8.410216461 8.449112678 270731414 cap virulence capsule Frankia sp. EuI1c superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 11.28694767 11.15621352 11.22060245 10.8725493 10.82838367 10.55693554 10.68750512 10.31912709 11.10202177 10.69847822 10.82225042 10.67453847 125862090 CadA Metal Resistance Cadmium Methanoculleus marisnigri JR1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanoculleus;species:Methanoculleus marisnigri; 8.935914867 8.728286318 8.87414263 8.456192472 8.328142733 8.344089049 7.959510047 8.09099476 8.372150308 8.229821839 8.052738306 8.451677291 92393068 katE Stress Oxygen stress Psychrobacter cryohalolentis K5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter cryohalolentis; 8.29592403 8.092934899 8.176512753 8.198586473 8.132648202 8.284118226 7.935838454 8.115039459 8.089246635 70729841 glnA Stress Nitrogen limitation Pseudomonas fluorescens Pf-5 8.091043616 7.886490991 7.689570137 8.226445806 8.084054042 8.042174179 7.801523165 8.01334987 7.775251186 118758098 pcaG Organic Remediation Aromatics Other aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 9.415135498 9.341001228 9.239423348 8.652226579 8.466941825 8.64640777 8.73730068 8.677602339 8.655289437 8.655617245 8.557637019 8.897559607 126166298 MFS_antibiotic Antibiotic resistance transporter Pseudomonas aeruginosa C3719 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.753899029 8.758431194 8.499074734 8.203467769 8.591003776 9.011540433 8.638141167 8.473149638 8.223314944 8.33380395 8.315595904 167347532 vanA Carbon cycling Carbon degradation Others Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.421468576 8.227278449 8.281081686 7.768807514 7.844851904 7.76571049 7.774254627 8.160395298 8.15876912 7.942993744 7.828823342 7.968635745 209401682 narG Nitrogen Denitrification uncultured bacterium 8.33366096 8.359291147 8.285137101 7.519104757 7.676475658 7.610999856 7.812348725 7.677222858 7.631443063 167566792 B_lactamase Antibiotic resistance Beta-lactamases Burkholderia oklahomensis EO147 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia oklahomensis; 8.39980055 8.478921671 8.084175112 8.348583815 8.042907971 8.261723804 7.958231577 8.53108451 8.015373264 8.157469471 7.965176915 171278951 groEL Stress Heat shock Bifidobacterium dentium ATCC 27678 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium dentium; 8.518930966 8.677599701 8.655664664 8.675653486 8.776450161 8.59142736 8.817953608 9.058303751 8.659779375 8.980124027 8.615084033 8.681600649 221726058 nmoA Organic Remediation Aromatics Nitoaromatics Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 9.093674057 8.873300031 9.074598926 8.677168591 8.682973921 8.471805265 8.656448655 8.979623718 8.616138915 8.839466469 8.844854232 8.768304139 220933823 fnr Stress Oxygen stress Thioalkalivibrio sp. HL-EbGR7 8.338383336 8.357215935 8.028354565 7.696916329 7.910961607 7.664160975 7.150453311 8.070627441 7.485933153 7.682810114 7.345845697 94471203 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.809060637 8.830511716 8.739637809 8.437274548 8.391108267 8.261975923 8.403251198 8.036960345 8.478177243 8.198049676 8.165833446 8.233902176 119947311 gyrB other category gyrB Psychromonas ingrahamii 37 7.987490045 8.190500077 7.172173939 7.014710134 7.12130967 6.889845939 7.463450938 7.027463798 7.316031419 169826027 alkK Organic Remediation Others Lysinibacillus sphaericus C3-41 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Lysinibacillus;species:Lysinibacillus sphaericus; 8.455842863 8.521210212 8.900666811 7.901032528 7.807736731 8.151598535 8.146622668 7.667359639 8.220882338 8.352071419 222441457 mer Metal Resistance Mercury Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 9.59861529 9.408284162 8.954355737 9.648238863 9.411234822 9.600066826 9.205208007 9.593896691 8.857749956 9.381246122 9.726111877 9.339748929 148867632 cda Carbon cycling Carbon degradation Starch Vibrio harveyi HY01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 8.77003504 8.947966756 9.159887075 7.925980996 8.013888676 7.731209775 7.903777426 7.911070036 7.842972113 8.157699707 228015245 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 8.801721593 8.825431208 8.984500879 8.433363569 8.345408251 8.174913569 8.119029588 7.960072649 8.396480744 8.201035402 8.015616044 8.303948526 163795421 czcA Metal Resistance "Cadmium,Cobalt,Zinc" alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 8.796313177 8.848461737 8.594655788 8.933386366 8.815441518 8.567717083 8.448611664 8.772318455 8.795812048 8.836670989 8.822315769 8.784596459 91682657 fnr Stress Oxygen stress Rhodopseudomonas palustris BisB5 8.669428708 8.768766087 8.615029472 8.367858635 8.233452982 8.285559367 8.191034519 8.242408301 8.532788382 7.979405813 8.189711214 8.03356518 114320274 fnr Stress Oxygen stress Alkalilimnicola ehrlichii MLHE-1 9.142216127 9.029882472 8.931587656 8.498971764 9.067892453 9.096583838 8.872185896 9.091160704 8.685176217 9.048527576 8.64279969 193214979 dnaK Stress Heat shock Chloroherpeton thalassium ATCC 35110 8.157485149 8.145900492 8.121790827 7.49468616 7.398240537 7.513072998 7.746088829 7.30630701 8.156168739 7.408863225 7.636525824 7.528408271 39934688 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 10.58580282 10.41228389 10.1760332 10.46919682 10.34711744 10.10560439 10.64334839 10.42382521 10.17131297 10.38480811 10.67569493 10.20739708 82703441 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira;species:Nitrosospira multiformis; 9.661787144 9.548711226 9.626147621 9.502591436 9.478826663 9.365664681 9.387354247 9.591385413 9.426281645 9.534041281 9.575219776 9.481694582 167349025 CopA Metal Resistance Copper Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.469508629 8.526726654 8.418842418 8.393731844 8.318474686 8.092549878 8.149174513 8.239304683 8.499925722 8.190106671 8.280694301 7.953042348 154246712 nmoA Organic Remediation Aromatics Nitoaromatics Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.27457743 8.848211847 8.376081607 8.395720152 8.322555411 8.006749824 8.487626258 8.241654836 8.331913824 8.402374744 7.946674075 167646275 sigma_24 Stress Sigma factors Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 9.460129165 9.563557273 9.469523321 9.008906626 9.051024556 8.836824935 9.017927423 9.128579748 9.058927961 9.139124244 9.220958888 9.07748429 115423206 arsB Metal Resistance Arsenic Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 7.347966745 7.286171011 7.203762527 7.239128896 7.456348655 78034227 linB Organic Remediation Pesticides related compound Xanthomonas campestris pv. vesicatoria str. 85-10 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas euvesicatoria; 8.395743479 8.290913891 8.459474243 8.121257561 8.336142379 8.444036635 8.232065541 8.328742804 8.715941643 8.20865239 8.896667518 8.158537382 171742944 hrcA Stress Heat shock Bifidobacterium dentium ATCC 27678 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium dentium; 7.753758087 7.90422409 7.873935158 7.542677059 8.057653146 7.870650643 7.789198358 7.763934211 7.976716591 148260995 acpA_III Bioleaching other category Acidiphilium cryptum JF-5 8.47699975 8.134335175 8.271846395 8.157790269 8.263866167 8.071220193 8.43257562 8.042378802 8.196376909 8.343904159 8.209121291 8.052218497 83575217 CODH Carbon cycling Carbon fixation Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 9.630029477 9.636746376 9.531232324 9.278527624 9.424699931 9.132570328 9.378582871 9.606245842 9.098378975 9.453423477 9.285426545 9.455497216 76875977 bphF1 Organic Remediation Aromatics Polycyclic aromatics Pseudoalteromonas haloplanktis TAC125 8.491807649 8.426151388 8.596303494 7.895392836 8.027057049 7.838440131 8.032193205 8.355260218 8.472103149 8.648270638 8.611478138 94470841 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.187750233 7.992680842 8.421868805 7.562471371 7.459160975 7.213514844 7.048077897 7.530014603 7.165059544 7.33755362 114707401 sigma_32 Stress Sigma factors Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 8.853226403 8.587765084 8.632029534 8.64754256 8.463540832 8.266698751 8.50173297 8.785601384 8.602374233 8.467107632 8.309795972 8.484273169 152013648 phenol_oxidase Carbon cycling Carbon degradation Lignin Fusarium oxysporum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;genus:Fusarium; 7.546653659 7.468547143 6.863879108 7.332758042 7.453042379 71740575 CopA Metal Resistance Copper Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 8.27406403 8.238706771 8.539176577 7.947677217 7.721755556 7.896716526 7.964029907 7.464627859 8.158697399 7.891360529 7.734575153 8.017553982 170653368 fnr Stress Oxygen stress Methylobacterium radiotolerans JCM 2831 9.017141068 8.845843446 8.7723909 8.810308 8.524833502 8.59766041 8.935859208 8.796804455 8.825814589 8.823251838 8.624881835 68562736 FTHFS Carbon cycling Acetogenesis Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 9.701752824 9.71186702 10.02659691 8.953448088 8.969746079 8.974949995 8.940397007 8.8572463 8.732937457 8.945274203 8.795650974 9.297126749 260063457 pcc Carbon cycling Carbon fixation Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 8.451366679 8.439472238 8.582063886 8.066238223 8.141962513 8.189509884 8.145857372 8.228446335 8.655625547 8.558384723 8.605007511 224964093 katE Stress Oxygen stress Erwinia pyrifoliae Ep1/96 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia pyrifoliae; 8.545683346 8.381703263 7.640951537 7.759325892 7.577832172 7.543774847 7.478077772 7.613710693 7.619273643 7.507402391 71383860 nasA Nitrogen Assimilatory N reduction uncultured bacterium superkingdom:Bacteria; 8.574351989 8.451009406 8.871419836 8.388116791 8.333554698 8.151771575 7.752635816 8.141687903 8.417520957 7.974202524 8.11805906 8.015364257 152980166 ureC Nitrogen Ammonification Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 11.29910128 11.07510457 11.2296662 10.67322329 10.62944061 10.45591589 10.8258296 10.43391678 10.7648203 10.68533133 10.87278847 10.88632663 238695132 Host_recognition_T4_type Bacteria phage HOST RECOGNITION/STRUCTURAL Enterobacteria phage JSE order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 8.585032648 8.610667793 8.848614639 8.269651584 7.985756763 7.871232649 7.825080872 7.802891631 7.855998481 7.865269308 8.124892378 85823307 pcc Carbon cycling Carbon fixation Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.728907183 7.929068236 7.836257499 7.639296133 7.966561149 7.918319512 8.001251904 8.026907577 168186843 srt virulence surface protein Clostridium botulinum C str. Eklund superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium botulinum; 8.583009128 8.507414126 7.543527395 7.458532216 7.635290616 7.628724336 7.342030943 7.787954648 259166146 narH Stress Oxygen limitation Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 9.052910176 9.153820654 9.342376178 8.577387414 8.406342018 8.271764874 8.610989845 8.373649089 8.624670038 8.483018459 8.514392757 146410039 mdlD Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. BTAi1 8.865637909 8.975712421 9.218807327 8.812925446 8.718246177 8.700998909 8.421648184 8.814810556 8.394576178 8.717758533 8.703845672 8.399187908 283839400 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.503040906 9.753465135 9.495636136 9.269292296 9.028462516 9.050443192 9.476571743 9.171890446 9.668146525 9.09249626 9.10213715 8.978585113 218719457 nagI Organic Remediation Aromatics Aromatic carboxylic acid Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 7.160654974 6.984477797 7.251992594 7.406809882 6.85175433 7.89919776 7.151687703 6.993162171 7.347733148 190996686 cytochrome Energy process Energy process Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 7.750163922 7.760664733 8.067093624 7.925844824 7.930047239 8.075499066 8.25309358 7.862202784 77465667 nitA Organic Remediation Aromatics Other aromatics Rhodobacter sphaeroides 2.4.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 8.451341397 8.340578471 8.542198252 8.446469261 8.472468548 8.134524015 7.996390224 8.500455978 8.293646306 8.389822751 8.12836112 8.591451073 217402431 amyA Carbon cycling Carbon degradation Starch Bifidobacterium angulatum DSM 20098 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium angulatum; 8.131189056 8.049934959 7.991891566 7.434665978 7.478108608 7.578899736 7.681047872 8.107453191 126462081 nagG Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacter sphaeroides ATCC 17029 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 8.291699485 8.352861792 8.222898298 8.205356769 8.291761854 8.34813732 8.425683656 8.465527334 152987558 CopA Metal Resistance Copper Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 9.495832642 9.646786127 9.44552135 8.699234816 8.404425817 8.794280746 8.942108416 8.452313333 8.990837614 8.678547016 8.83688329 8.514507183 223962498 amyA Carbon cycling Carbon degradation Starch Holdemania filiformis DSM 12042 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichi;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Holdemania;species:Holdemania filiformis; 9.627241517 9.790454709 9.532700556 9.010646769 9.218943511 9.13104959 9.45135311 9.452438162 9.278585345 9.374323413 9.427846427 9.325021018 261417048 cap virulence capsule Fibrobacter succinogenes subsp. succinogenes S85 superkingdom:Bacteria;phylum:Fibrobacteres;class:Fibrobacteres;order:Fibrobacterales;family:Fibrobacteraceae;genus:Fibrobacter;species:Fibrobacter succinogenes; 8.657340792 8.780081547 8.282514909 8.255631931 8.729557075 8.939363783 8.590032144 8.603952457 8.147356217 8.67140069 8.152281718 67901830 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.150045411 7.3656302 159038410 pimF Organic Remediation Aromatics Aromatic carboxylic acid Salinispora arenicola CNS-205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 8.330744441 8.664279984 8.383661472 8.350036528 8.678900956 8.710656173 9.116827494 8.854040399 8.54898004 8.6966248 9.118623691 8.898417434 90333020 pimF Organic Remediation Aromatics Aromatic carboxylic acid marine gamma proteobacterium HTCC2207 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.332882796 8.328952551 8.535711006 7.744600055 7.988538683 8.19729902 8.249245134 8.446248159 8.345605767 7.690382838 148571929 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 9.460651796 9.121713456 9.304435957 9.424833989 9.089637115 9.058156626 8.847487503 9.241122859 8.807110618 9.261452402 9.222279093 9.176535864 196255728 pstB Stress Phosphate limitation Cyanothece sp. PCC 7822 10.06274002 9.893952723 10.13903159 9.027899594 8.868215125 8.974667544 9.011391696 8.805658525 8.748751022 9.083237922 9.120736113 9.521803336 116694342 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.965002084 9.400160899 8.982156219 9.563121075 9.365708316 9.032689295 9.631826452 9.665145504 9.30176877 9.581339669 9.344381439 9.385476484 39997914 nifH Nitrogen Nitrogen fixation Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 8.44956888 8.55507864 8.408531528 7.479962508 7.508483266 8.085248794 8.291069067 7.681589032 8.469833839 7.554501342 7.791532134 7.739163424 212633154 pilin virulence pilin Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 8.361297486 8.691805917 7.82952546 7.719505418 7.960732623 7.757877072 7.776535155 7.78930606 7.733147033 7.781967032 8.017291494 118168718 nitA Organic Remediation Aromatics Other aromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.878197253 8.506745245 8.257350261 8.273233448 8.416361821 8.515227948 8.125126897 8.456587965 8.286443895 8.189713296 8.432778971 8.478002381 94312730 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.781772268 8.884045996 8.825665087 8.305057458 8.331366614 8.383103009 8.558857687 8.027391703 8.88120813 8.095620028 8.366941931 8.256971254 160896802 vanA Carbon cycling Carbon degradation Others Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 10.09837893 10.48525484 10.24828529 9.727892621 9.888271788 10.44107617 10.52681708 10.19906196 10.50476197 10.440695 10.41600041 10.64721309 224611474 obgE Stress Radiation stress Thioalkalivibrio sp. K90mix superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 8.341098787 8.256507238 7.955810018 8.046961416 8.096550672 8.064515844 8.161682061 8.203395663 8.072327117 8.025965349 7.743418811 126170748 pilin virulence pilin Pseudomonas aeruginosa C3719 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.266950465 8.480548941 8.002965932 7.892638587 7.683582879 8.426236081 8.261105841 33567511 tfdA Organic Remediation Aromatics Chlorinated aromatics Bordetella bronchiseptica RB50 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella bronchiseptica; 8.404844382 8.42070453 8.831173361 8.689025584 8.741677782 8.299808541 8.577043024 8.919375963 8.633354412 8.803043645 8.568819655 8.60254105 254382345 ABC_antibiotic_transporter Antibiotic resistance transporter Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.586337631 8.44176267 8.203521491 8.174385898 8.043797522 8.084530843 8.205864852 8.226800579 8.283328256 8.377112112 8.280279819 8.382564486 193226041 dbdC Organic Remediation Aromatics Heterocyclic aromatics Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 9.10210725 9.371671316 9.235183534 9.064907102 9.007122169 8.976350685 9.536118327 9.377288481 9.605597963 9.031178294 8.98427242 9.073604811 146190481 MFS_antibiotic Antibiotic resistance transporter Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.587699805 8.503942013 8.515183181 8.376027064 8.29489588 8.579615359 8.468644614 8.289551027 8.256229451 8.074186811 7.96704617 156936100 pstB Stress Phosphate limitation Enterobacter sakazakii ATCC BAA-894 8.265773469 7.910286093 8.199661641 7.996104215 8.196774634 8.064900624 8.655421611 8.160677143 8.688221387 8.293851138 8.376075109 206566403 CopA Metal Resistance Copper Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 8.803419102 8.587371506 8.449567113 9.055134715 8.839301838 8.480042223 8.974248889 8.996204649 8.838168664 8.763112588 9.010367614 8.358782915 84701970 sigma_32 Stress Sigma factors Parvularcula bermudensis HTCC2503 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 8.428680171 8.553105565 8.217695078 8.186695091 8.126115676 8.027326449 8.397886471 8.285173683 8.442169958 8.662280523 8.391893185 225042545 bglH Stress Glucose limitation Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 8.703169481 8.388615324 8.663627165 8.264154712 8.203686699 8.343597785 8.054816591 8.046611397 8.612038174 8.126788854 8.179700886 8.188410951 56314216 pstB Stress Phosphate limitation Aromatoleum aromaticum EbN1 9.519679185 8.934111548 9.40172636 8.985752703 9.000948854 8.955428691 9.175971046 9.050232844 8.942792717 9.167375758 9.1623352 9.4425505 256796509 sigma_24 Stress Sigma factors Kangiella koreensis DSM 16069 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Kangiella;species:Kangiella koreensis; 8.874713295 8.775003865 9.043131246 8.337154942 8.097478175 8.153152354 7.947175327 7.853325918 8.436559051 7.653354818 7.780115534 8.406177509 42524438 cap virulence capsule Bdellovibrio bacteriovorus HD100 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 8.218989657 8.224430274 8.02328981 8.141344509 7.663068929 8.303061682 8.21521686 8.194150485 8.02184465 66356045 glnA Stress Nitrogen limitation Lyngbya aestuarii PCC 7419 9.19428389 9.004997405 9.189629499 8.575677261 8.103248945 7.990202325 7.868049546 7.999067022 7.787074187 7.916439194 8.344769841 145563568 gyrB other category gyrB Shewanella putrefaciens CN-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella putrefaciens; 8.332512477 7.995143722 8.149176931 8.0097995 7.63416807 7.658844438 8.136723937 7.907790724 8.204755075 8.075485583 8.224856883 63253984 oxdB Organic Remediation Aromatics Nitoaromatics Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 8.217328618 8.523650047 8.714750053 7.818403591 7.687433251 7.711713412 7.81110152 7.390374076 7.585957109 7.333504846 7.726650739 165912100 pstB Stress Phosphate limitation Yersinia pestis biovar Orientalis str. IP275 8.283892929 8.68055928 8.792238437 8.131975748 7.91367449 8.136065431 8.591379678 8.004702227 8.128727488 7.781047537 7.930201505 7.92979069 32471396 sigma_70 Stress Sigma factors Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 8.861522491 8.688987614 8.752068464 8.355422108 8.264760955 8.189050273 7.888496779 7.724464128 8.518050456 7.965060132 7.796485344 8.349262258 161381184 glnA Stress Nitrogen limitation Oceanibulbus indolifex HEL-45 8.648558835 8.624224321 8.798048658 8.058011982 7.770584294 8.359247278 8.381344779 8.31271544 8.068187909 8.000168145 7.941761275 8.083431779 170738538 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 8.306282586 8.49936477 8.726067089 8.312219895 8.315121439 8.261958484 8.493630303 8.413923606 8.384960796 8.471387481 8.622183571 8.293327408 257895937 srt virulence surface protein Enterococcus faecium Com12 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus faecium; 7.794359535 7.288041256 87284064 sigma_70 Stress Sigma factors Synechococcus sp. WH 5701 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 9.457194214 9.571520165 9.509674221 8.62350557 8.491556212 9.025598629 8.97597188 8.760068691 8.872110311 8.892779336 8.786691847 9.114752335 119641164 arhA Organic Remediation Aromatics Heterocyclic aromatics uncultured bacterium 9.072467202 9.285074714 8.839865526 8.652488502 8.552430673 8.41096498 8.496573586 8.557110643 8.61585277 8.58249095 8.825298504 170174517 TerC Metal Resistance Tellurium Candidatus Korarchaeum cryptofilum OPF8 superkingdom:Archaea;phylum:Korarchaeota;genus:Candidatus Korarchaeum;species:Candidatus Korarchaeum cryptofilum; 9.084103735 9.030630788 8.83352994 8.328680999 8.328539805 8.408067969 8.42373656 8.384024287 8.285180612 8.508000269 8.464251764 8.577596928 145317499 CopA Metal Resistance Copper Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 9.262185717 9.336246705 9.264921207 8.636728163 9.007652686 9.43569236 8.309453495 9.339486859 8.652021301 8.95336322 8.675278215 220903840 pstA Stress Phosphate limitation Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 8.138779644 8.40718241 8.512855756 7.963297796 8.560256048 8.471519803 8.548303625 8.538866045 8.635946403 8.503625346 8.89466519 219993129 fnr Stress Oxygen stress Halothermothrix orenii H 168 8.671562322 8.858833299 8.75274006 8.312912519 8.372006731 8.220142207 7.956818686 7.972087028 8.375804273 8.090664116 8.107924555 8.389133873 194292269 ChrA Metal Resistance Chromium Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 8.396010906 8.634101191 8.689345133 8.273539549 8.193847136 8.379184879 8.349041232 8.067234007 8.991179542 8.113294195 7.8244553 8.210598189 24421301 nirS Nitrogen Denitrification uncultured organism 9.095557703 9.0115758 8.923476892 8.968653942 8.779380705 8.818791265 8.899230561 8.965970055 9.030541599 9.072998195 9.229683858 8.867271075 91693574 bclA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.390693427 8.294674655 8.115265184 8.146956468 8.15600996 7.627992074 8.180583079 7.97986554 7.799590721 254982280 glx Carbon cycling Carbon degradation Lignin Nitrosomonas sp. AL212 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 8.475881285 8.412853244 7.934351058 7.902768911 7.77774872 7.87915307 7.808027133 7.754376457 7.614493932 7.845276456 151302159 AprA Sulphur adenylylsulfate reductase Desulfovibrio sp. JD160 8.759342857 8.766367475 9.045463833 8.523742477 8.923490477 8.706790077 8.507838049 8.395549322 8.589084029 8.313053994 8.341280969 8.334791581 167746794 atzA Organic Remediation Herbicides related compound Anaerostipes caccae DSM 14662 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Anaerostipes;species:Anaerostipes caccae; 8.488237965 8.7202172 8.665599043 7.768391956 7.672390863 7.924706753 8.41463258 7.717670884 8.137186879 7.838983453 7.972626219 7.872038384 39934570 Mex Antibiotic resistance transporter Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.705310863 8.334708421 8.582682213 8.498090196 8.384869762 8.15254095 8.327154773 8.187108196 8.014208524 8.288148966 8.061842563 8.241025141 86571047 fnr Stress Oxygen stress Rhodopseudomonas palustris HaA2 8.496767837 8.392296724 8.042088158 8.017790125 8.354507755 8.614017595 8.093477648 8.812316526 8.016757736 8.081586238 8.262169071 159185018 sigma_24 Stress Sigma factors Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 9.594811417 9.550626557 9.527559804 8.748610058 9.408313798 9.69391195 9.690052082 8.760460967 9.556532965 8.910811724 9.064692226 9.250280457 167351638 nitA Organic Remediation Aromatics Other aromatics Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 10.00851487 9.731480014 9.561159637 9.407685646 9.253169296 9.078449678 9.474272387 9.379715459 9.486127842 9.406738107 9.2747206 9.327166428 254819182 CDH Carbon cycling Carbon degradation Cellulose Mycobacterium intracellulare ATCC 13950 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 8.678070371 8.455007911 8.546845888 7.968688965 7.980168642 8.083434197 8.165240178 8.057571377 8.560699832 7.943222195 8.246330214 8.10290974 116073929 ZntA Metal Resistance Zinc Synechococcus sp. RS9916 9.30630867 9.12420941 9.240480487 8.567352885 8.458595223 8.35350491 8.575434079 8.326357264 8.379767302 8.540523202 8.284220313 8.770962337 116698839 GroES Stress Heat shock Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 8.640704464 8.482439617 8.5893664 8.149592667 8.050226526 8.167629931 7.596096763 7.829773699 8.350262431 7.799703375 7.776262178 8.08370717 1613781 GroES Stress Heat shock superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 9.026631051 9.267986028 9.250468059 8.413290904 8.048587686 8.537666523 8.767823521 7.821926337 8.931597159 8.564806583 8.847638953 8.600490891 218758321 hydrogenase Energy process Energy process Desulfovibrio vulgaris str. 'Miyazaki F' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 8.332559962 8.376913979 8.475667921 7.992937761 7.814487691 7.84096302 7.739989925 7.449094785 8.057430491 7.9387067 7.794117285 7.78578307 158333402 pstB Stress Phosphate limitation Acaryochloris marina MBIC11017 9.228066653 9.208107684 9.308351506 8.997934795 9.065525656 8.773879431 8.847070722 9.248812674 8.657944264 9.230299762 9.414525061 9.357959162 126707722 vanA Carbon cycling Carbon degradation Others Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 8.53000642 8.759078605 8.102632905 8.356585552 8.482327622 8.714575379 8.907775576 9.249279152 8.618001571 9.112248503 9.197444639 9.143523931 206676325 pmdAB Organic Remediation Aromatics Others Rhodobacterales bacterium HTCC2083 8.439584445 8.116374439 8.343749731 7.925859138 7.944262223 7.728348409 7.674719838 7.787933009 8.003133129 7.751791083 8.039450394 7.885372382 114799004 pnbA Organic Remediation Aromatics Nitoaromatics Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 9.609697314 9.491975854 9.629230424 9.038197543 8.900773529 8.783406686 8.957876604 9.031629461 8.911799597 8.941668497 8.95958479 9.001707023 116700160 silC Metal Resistance Silver Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 8.552809846 8.639628154 8.588466889 8.699430834 8.333007153 8.549633358 9.050729836 9.103453262 8.670312741 8.685128172 8.582530386 254410684 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus chthonoplastes; 9.832961426 9.851355856 10.08176727 8.727553401 8.607195599 9.025938063 9.205629796 9.095979168 95132743 hly virulence hemolysin Desulfuromonas acetoxidans DSM 684 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Desulfuromonadaceae;genus:Desulfuromonas;species:Desulfuromonas acetoxidans; 8.717003991 8.628809409 8.975125584 8.162506035 8.016964946 8.132605708 7.817652208 7.553952335 7.920819597 8.086754182 8.198313037 8.21531193 134098572 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 8.879099337 8.777642257 8.768423008 8.402869789 8.664655424 8.784184396 8.413385056 8.46985162 8.757546559 8.52480551 8.988544186 8.571427976 156857691 APS_AprA Sulphur adenylylsulfate reductase uncultured bacterium superkingdom:Bacteria; 9.324631832 9.45734095 9.63576261 9.168738765 9.061972885 8.812571725 9.093841957 9.393466585 9.369416889 9.458703457 9.589089775 9.503868302 283104688 hly virulence hemolysin Bulleidia extructa W1219 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichi;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Bulleidia;species:Bulleidia extructa; 8.15460738 8.123700068 7.304347782 7.353792837 6.704795055 7.355521704 148572287 TerZ Metal Resistance Tellurium Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 8.443144798 8.361701504 8.667666403 8.358124805 8.303329754 7.971679093 7.799285475 8.290347733 8.257870137 8.357942724 8.044632571 8.140865541 229324626 pstS Stress Phosphate limitation Rhodococcus erythropolis SK121 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 9.133007504 8.390613868 8.950359028 8.796011696 8.497675422 8.940561421 8.662733274 8.783938282 8.575559145 8.699333981 8.277516181 220710809 iro virulence Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.689685895 8.55468173 8.740621333 8.688150125 8.547471856 8.560290624 8.647643419 8.623724081 8.755980284 8.714086744 8.204374671 225646208 sigma_70 Stress Sigma factors Persephonella marina EX-H1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Hydrogenothermaceae;genus:Persephonella;species:Persephonella marina; 8.605118129 8.148746625 8.545122628 8.020359182 7.794393757 7.416173556 7.54168345 7.514843582 144899378 sox Sulphur Sulphur oxidation Magnetospirillum gryphiswaldense MSR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 8.555890897 8.682199066 8.470278951 8.254627199 8.068865348 8.088825331 8.733167417 7.951026564 8.382230978 7.479079691 7.845510574 7.698131151 162450650 pulA Carbon cycling Carbon degradation Starch Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 9.33313147 9.265361165 9.438345884 8.877554382 8.7034171 8.587353009 9.209575473 8.817773029 9.089261405 8.844336843 9.068356316 8.845826698 268311636 katE Stress Oxygen stress Thermomonospora curvata DSM 43183 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora;species:Thermomonospora curvata; 9.040261795 9.02986629 8.886210146 8.596410258 8.64540111 8.928946053 7.739463759 9.330628311 8.272448956 8.311155916 8.388600439 196478412 sigma_24 Stress Sigma factors Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 9.068498922 8.343146918 8.17917092 8.64476756 8.445883691 8.634239195 8.72030156 8.475748326 8.486919379 8.223525924 8.329960515 8.15803417 83845505 pcaG Organic Remediation Aromatics Other aromatics Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 8.926971865 8.957891231 8.320853798 8.075157782 7.220048052 8.221651134 8.652987256 8.002191091 7.801528053 8.193578583 7.942072692 113909954 CopA Metal Resistance Copper Shewanella baltica OS195 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 8.208315449 8.181838987 8.210608252 7.668386551 7.666222908 7.70367752 7.866783579 7.243349059 7.93727544 7.37391422 7.500861514 7.588755815 146402392 pimF Organic Remediation Aromatics Aromatic carboxylic acid Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 8.525976084 8.483586252 8.826622068 8.070610191 7.816191996 7.668601711 7.890912057 7.657369927 8.289434784 7.786836789 7.67499365 7.935868078 160898717 iro virulence Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.259459071 8.232833677 7.682512362 7.425077687 7.557900327 7.978285801 7.704104464 7.330652276 7.310647149 7.547658399 27382949 HBH Organic Remediation Aromatics BTEX and related aromatics Bradyrhizobium japonicum USDA 110 8.518789073 8.66790411 8.819099049 8.420367158 8.327450517 8.106935561 8.378713069 8.473930782 8.324028276 8.459121598 8.341536096 8.23171685 196223618 pstB Stress Phosphate limitation Chthoniobacter flavus Ellin428 8.437611452 8.60503985 8.574777785 8.25052867 8.309162894 8.230068777 8.463853706 8.141513272 8.277851728 8.336372111 8.391114299 7.962341682 262381226 ara Carbon cycling Carbon degradation Hemicellulose Bacteroides sp. 2_1_33B superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 8.480716195 8.508552911 8.682383127 8.314123837 8.39450602 8.195082626 7.980280712 8.516671594 8.204021023 8.444555842 8.043954118 8.341104041 187923583 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phytofirmans PsJN 7.35932282 7.090525063 209486061 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.413959519 8.025306905 8.364039313 7.883826582 7.943655148 7.664707089 7.943232813 7.844834125 8.092478465 7.941990431 7.605768237 7.664767446 55377651 nitA Organic Remediation Aromatics Other aromatics Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 8.844883636 8.536158625 9.095677405 8.476822376 8.086559798 8.254016351 7.478800632 7.510885417 7.888646913 8.092822823 8.123414726 8.52058201 28870123 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 8.533508007 8.297239587 9.019199601 9.001167919 8.531630673 9.504761134 8.266451945 8.88531242 8.973139474 9.14040957 116619148 gyrB other category gyrB Solibacter usitatus Ellin6076 8.69696177 8.677680268 8.745169953 7.937538111 7.878350498 7.872527559 7.747517079 7.583130841 7.6510571 7.314706813 7.957175493 229537242 sigma_24 Stress Sigma factors Planctomyces limnophilus DSM 3776 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces limnophilus; 8.50379422 8.580532959 8.492500251 7.898424449 7.780666891 7.4626888 7.58163271 7.698884195 7.591865616 7.547535826 7.859319722 93357356 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.720579494 8.591087115 8.932780646 8.466539235 8.404240937 8.083003929 8.44869484 8.825130356 8.615296569 8.794016819 8.646007755 8.97746189 111020274 BADH Organic Remediation Aromatics Other aromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.450143179 8.941458852 8.805372513 8.501583176 8.664309497 8.951074718 8.865004171 8.444488301 8.742135962 8.614394364 8.966150051 8.720490605 33333869 nidA Organic Remediation Aromatics Polycyclic aromatics Mycobacterium sp. S65 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 9.847875582 9.979949815 10.06444507 9.634074026 9.642596627 9.568278079 10.00652006 9.941423267 9.921397533 10.10586178 10.20111521 10.20018121 71915736 xylA Carbon cycling Carbon degradation Hemicellulose Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 9.487516387 9.951187248 9.703848089 9.98380002 10.16432419 10.00767561 9.819648462 10.2808619 9.603855643 10.14701626 10.17106227 10.11171571 221169504 fnr Stress Oxygen stress Burkholderia multivorans CGD1 7.495453565 7.409244326 7.11564029 6.94504784 7.23912955 7.880019906 7.387124895 7.0632789 6.984461663 238726501 hly virulence hemolysin Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 9.325371044 9.168687805 9.376165654 8.676500678 8.807962532 8.710172033 8.405236915 8.243121677 8.544268805 8.413655428 8.787458202 110283810 oxyR Stress Oxygen stress Chelativorans sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 8.547324198 8.514044542 8.234170223 7.908974677 8.071441058 7.926533944 8.210715657 7.482129038 7.719161246 7.75352243 7.859630465 197925856 amyA Carbon cycling Carbon degradation Starch Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 7.943966385 8.012596618 8.190534406 7.891596078 8.244166914 8.149348766 8.125971272 8.353387757 8.160530546 8.293014959 8.1440963 7.769511025 108768762 benAB Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium sp. MCS 9.378687115 9.753372889 9.836340801 9.884580682 10.25604837 10.08289808 9.749233406 10.39769089 9.541125571 10.01571857 9.932848861 10.29365191 184199523 nirK Nitrogen Denitrification uncultured denitrifying bacterium superkingdom:Bacteria; 8.421242627 8.713721353 8.689609014 8.137910174 7.858992213 8.011080197 7.894518959 7.845549778 8.007347073 109640306 rd Organic Remediation Chlorinated solvents Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 8.270968188 8.253283887 8.454374856 7.701024759 7.262364817 7.998037477 7.456024034 7.292163702 7.575884384 7.741305049 76667367 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.870577126 8.080011582 8.041374158 8.027630734 7.855777861 7.729626467 7.799013791 7.934845393 7.970116276 7.942322653 7.86100295 7.788605696 119483044 tfdA Organic Remediation Aromatics Chlorinated aromatics Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 8.226789239 8.194280825 8.230067266 7.083384202 7.443704423 7.625672543 7.970328484 7.287677175 6.974675655 7.433595494 256826231 clpC Stress Protein stress Kytococcus sedentarius DSM 20547 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermacoccaceae;genus:Kytococcus;species:Kytococcus sedentarius; 9.585693676 9.632591343 9.611985785 9.030124259 8.905300885 8.903695939 9.001933961 8.710029287 8.91420987 9.01848633 9.052266904 9.106882742 221721956 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.287038524 8.012599877 7.959693458 7.702586885 7.712708365 7.313710173 7.901075304 7.888801926 7.832277573 7.855125996 7.902481605 94422579 silC Metal Resistance Silver Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.750803504 8.674048152 8.578943344 8.4499165 7.888635978 7.827466709 7.865567971 7.781024436 7.822986769 7.975399711 8.105047863 90903269 aoxB Metal Resistance Arsenic uncultured bacterium superkingdom:Bacteria; 8.332673889 8.122268503 8.042851424 7.664125421 7.348224085 7.908554207 7.798011234 8.125659316 7.628469392 7.750806088 7.566267715 260455830 amyA Carbon cycling Carbon degradation Starch Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 9.577069465 9.636655935 9.631816756 8.867928206 8.491425978 8.894970924 8.92991718 8.462112005 8.712005216 8.613466375 8.826575911 8.986696053 118073563 cda Carbon cycling Carbon degradation Starch Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 9.449857798 9.25037811 9.296838533 9.017072627 9.029769132 8.749415566 8.701693719 8.815818973 8.854831875 8.89446189 9.051410579 112800673 ZitB Metal Resistance Zinc Campylobacter concisus 13826 9.541817544 9.300358034 9.584559146 8.785038442 8.384792709 8.297389481 8.383733643 7.937392912 7.595659073 8.650395782 8.624305658 118570362 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 8.254491641 8.110572192 8.210866043 7.778703454 7.779154947 7.686018838 8.035669206 7.541037437 7.639345609 7.321343318 7.691004153 62084134 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.515006006 8.077543084 8.723211217 8.1655754 8.121352913 8.023324169 7.647496725 8.251895297 8.059881219 8.126186612 7.796846701 7.809133515 162707986 Catechol Organic Remediation Aromatics Other aromatics Burkholderia sp. DNT superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.727225295 8.690159093 8.400906378 8.474956631 8.530609312 8.316942077 8.488262475 8.790779634 8.74525194 8.523683503 8.680643022 56695700 chnB Organic Remediation Other Hydrocarbons Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 9.221621363 9.311933694 9.164207198 8.648104737 8.712563593 8.797073898 8.673995111 9.021481318 8.856180651 8.747689403 8.899903883 8.934693523 220913129 sigma_24 Stress Sigma factors Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 9.420307418 9.551464879 8.827971542 8.923636009 8.690136033 8.426505072 8.322201667 8.88121611 8.564418484 8.846495127 51857504 sigma_24 Stress Sigma factors Symbiobacterium thermophilum IAM 14863 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVIII. Incertae Sedis;genus:Symbiobacterium;species:Symbiobacterium thermophilum; 8.928663286 8.617414025 8.491806617 8.616298158 8.496218542 8.132873126 8.593692943 8.430552602 8.717290469 8.901065748 8.355367248 48306 amyA Carbon cycling Carbon degradation Starch unidentified bacterium superkingdom:Bacteria; 8.531657596 8.409118921 8.752753078 7.975051613 7.964229425 7.955123652 7.685020313 7.697929131 8.38826765 7.906518584 7.660774467 7.926487679 32471653 NirB Nitrogen Assimilatory N reduction Rhodopirellula baltica SH 1 8.117129448 8.062251534 8.140841045 7.574969504 7.452198134 7.692440342 7.690521922 7.195529025 7.953177802 7.328839767 7.260131234 7.634208512 256787428 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Streptomyces lividans TK24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces lividans; 7.039138674 7.750771673 7.631145558 7.528590204 7.487852929 7.757758399 209966260 ArsC Metal Resistance Arsenic Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 8.940956252 8.078413183 8.380252182 8.705672187 8.27634781 8.114318545 8.520988867 8.333037247 8.267193255 8.078736737 7.814812949 8.003806432 87281225 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.571828376 8.610341615 8.303650367 7.981579713 8.015070689 8.080900042 7.836141024 7.790206736 8.15196452 7.869660099 7.93437923 7.988456433 116254538 proV Stress Osmotic stress Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.193452548 8.000379913 8.030707297 8.239518538 8.549472556 8.005518358 8.443750519 8.360159089 8.216041126 8.417048173 8.168584591 227069587 nirA Nitrogen Assimilatory N reduction uncultured archaeon 8.032229015 8.220867839 7.59824855 7.617526558 7.739955195 7.639052774 7.781260242 7.813957105 7.779718312 7.862977503 7.514729786 169638866 CopA Metal Resistance Copper Candidatus Desulforudis audaxviator MP104C superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Candidatus Desulforudis;species:Candidatus Desulforudis audaxviator; 8.152517488 8.065876223 7.671375428 7.606453968 7.34074988 7.687114396 7.538752042 7.968864838 7.576819433 110679871 pstA Stress Phosphate limitation Roseobacter denitrificans OCh 114 8.48718898 8.711843316 8.833084938 8.735573808 8.224362441 8.333833535 9.200215805 8.715355939 9.242324234 8.70483439 84714992 ureC Nitrogen Ammonification Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8.671887041 8.444127819 8.085591016 8.191151728 8.319958161 8.215144899 7.985599371 8.2947902 8.019630653 8.244762245 8.33477597 147886112 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured bacterium 9.256781069 8.71694136 8.954744598 8.989076857 8.71127028 8.731003226 8.679852933 8.474557397 8.592258033 8.47669925 8.690870276 8.576685953 134098051 SMR_antibiotics Antibiotic resistance transporter Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 9.681324032 9.618308987 9.698004273 9.180797761 8.950551407 9.066743491 8.902935167 8.91268584 9.07232014 9.204760357 8.982450436 9.254334532 87287959 clpC Stress Protein stress Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 9.188389469 8.886468203 8.998556526 8.995155932 8.991806515 8.920096985 8.646264883 9.19068562 8.670990294 8.991758088 9.019028677 9.167521943 151578 catB Organic Remediation Aromatics BTEX and related aromatics Pseudomonas sp. superkingdom:Bacteria;phylum:Proteobacteria; 8.747184088 8.642880876 8.916501322 8.260584009 8.112152891 8.250036714 8.279439583 8.107683149 8.300321037 8.122830597 8.17969153 8.352239311 148257865 BADH Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.487327262 8.159258675 7.887604454 8.298674155 8.138334337 7.819635201 8.601086245 7.910353817 8.210933675 8.184004633 8.28489521 117980556 pcaG Organic Remediation Aromatics Other aromatics Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.652152618 8.771892455 8.29332271 8.434368264 8.871413267 8.935861991 9.184461698 9.127138435 8.714152767 9.304711675 9.265476326 9.07372906 121305441 CadA Metal Resistance Cadmium Thermosinus carboxydivorans Nor1 9.242781107 9.379382332 7.938978572 7.870005651 7.922409387 8.013377265 8.085145899 8.039177769 8.19405519 8.557659505 227337329 grpE Stress Heat shock Rhizobium sp. NGR234 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 8.21239321 8.156688133 8.221242527 7.959233962 7.87054153 8.139255823 8.014841453 8.43662225 8.007057735 8.054945313 7.765259515 39935267 MFS_antibiotic Antibiotic resistance transporter Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.632343842 9.418045143 9.547465709 9.2955751 9.154789009 8.985246817 8.927093279 9.042542927 9.124727145 9.209039217 9.394754471 9.355279459 95111842 glnA Stress Nitrogen limitation Pseudomonas entomophila L48 9.360847613 9.239228779 9.329904556 8.907736674 8.919411549 8.493394402 8.864630358 8.811941438 8.698473171 8.758511738 8.71808351 16263147 norB Nitrogen Denitrification Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 9.144841297 8.833017714 8.57014893 9.295560299 9.274440611 8.881166981 9.052332118 9.624100261 9.039640876 9.364337759 9.184631278 148259363 4Fe_4S_ferredoxin Bioleaching Electron transport Acidiphilium cryptum JF-5 8.717003991 8.660827071 8.785265483 8.340090877 8.178928194 7.997141509 8.063843911 8.269855716 8.190840065 8.140006393 8.121707932 9949509 phn Organic Remediation Herbicides related compound Pseudomonas aeruginosa PAO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.359764519 7.911178241 7.731259108 7.525109254 7.750655946 7.646185705 7.577406635 7.796420264 7.534973745 7.906628113 7.508571677 189233228 contractile_tail_sheath_protein Bacteria phage STRUCTURAL Ralstonia phage RSL1 order:Caudovirales;family:Myoviridae; 8.904231237 8.963290464 8.795672415 8.815509278 9.015686462 8.967350947 9.286127341 9.449492341 9.398293229 9.481265986 9.376600663 9.454350727 13094175 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas resinovorans 8.371926249 8.443327915 7.706356706 7.654091936 7.434491903 7.52370331 7.633694171 7.614486158 7.454508834 7.381659357 7.663536221 189338584 ArsA Metal Resistance Arsenic Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 8.232221388 8.367996282 8.013977479 8.059676667 7.782782875 7.821078197 7.863270974 8.310766743 7.917126131 7.894851553 7.920592634 158436970 trzN Organic Remediation Herbicides related compound Clostridium bolteae ATCC BAA-613 9.342531891 9.316355819 8.421073069 8.304729539 8.380885827 86557275 ChrA Metal Resistance Chromium Synechococcus sp. JA-2-3B'a(2-13) superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.462010997 8.029926086 8.502788381 7.777542239 7.473047801 7.482373799 7.410667665 7.181180646 7.807538052 7.300735005 7.357300721 7.53700187 171914406 B_lactamase_A Antibiotic resistance Beta-lactamases Verrucomicrobium spinosum DSM 4136 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Verrucomicrobium;species:Verrucomicrobium spinosum; 9.028825067 8.810950072 9.0140851 8.517768978 8.133667987 8.346126423 8.303658886 7.874650197 8.444646154 7.946765146 8.070520381 8.178227751 254445350 phoB Stress Phosphate limitation Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 8.47033639 8.129751985 8.559767672 8.206585462 7.98946456 8.024634733 7.52802296 7.929389636 8.312397666 8.33236205 8.354841535 109452419 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.230340314 8.165453713 8.316991371 7.415646192 6.870517487 7.305081429 145246074 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8.646458797 8.405045666 8.456577289 8.540716335 8.67726898 8.642069014 8.948429833 9.092601482 9.171481621 9.184789952 9.230732952 239911469 pstB Stress Phosphate limitation Thermococcus gammatolerans EJ3 8.906041814 8.832204447 8.916584304 8.680705586 8.67358808 9.083713322 8.605713785 8.571387826 8.243982207 8.194411729 8.293915758 167586903 atzB Organic Remediation Herbicides related compound Burkholderia ubonensis Bu superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ubonensis; 9.441311526 9.565335454 9.650678043 9.800490443 9.731167312 9.441724686 9.759191626 10.03202785 9.931221898 10.10953889 9.857562867 10.09222618 94471325 narG Nitrogen Denitrification uncultured bacterium 8.332298763 8.379626082 8.649302173 7.783082228 7.437085547 7.804899783 8.330192683 7.702250775 8.21205088 7.718840085 7.855252544 7.81687736 110334122 gyrB other category gyrB Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 9.313498814 8.91581202 9.113916251 8.42256346 8.44814444 8.423415839 9.209914324 8.725396308 9.249107126 8.247155658 8.4519903 8.490430993 78093528 narG Nitrogen Denitrification uncultured bacterium 8.38779091 8.236070025 8.395246956 8.455306283 8.265311989 8.005515954 8.164895764 8.268222587 8.20251352 8.180595524 7.937109173 139478615 mer Metal Resistance Mercury uncultured actinobacterium superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 8.815994889 8.644256359 8.948831337 8.353091408 8.263239192 8.190574218 8.116479381 8.315422006 8.259870124 8.440336917 8.49444551 8.636204513 115366721 pilin virulence pilin Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 9.157361192 9.098753515 9.32614613 9.526270301 9.337810722 8.965109758 9.106243924 9.592402907 9.30873192 9.427075933 9.323560399 9.436158383 116621233 sigma_24 Stress Sigma factors Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 8.986554415 8.780247751 8.636139573 8.880716411 8.683540645 8.665026271 8.511370481 9.025041228 8.55290459 8.868729856 9.072079858 8.771427679 261282048 hrcA Stress Heat shock Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 9.274175588 9.19110919 9.346650233 8.612540224 8.602704264 8.550958357 8.972644347 8.601341422 9.131640717 8.521986301 9.044722118 118577254 silP Metal Resistance Silver Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 8.373522734 8.436056047 8.514147443 8.038266807 7.96660527 7.858383361 7.748799229 7.657423294 8.085279191 7.904013991 7.699427317 8.06828148 121534798 hrcA Stress Heat shock Thermosinus carboxydivorans Nor1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Thermosinus;species:Thermosinus carboxydivorans; 9.1760379 8.957560681 9.231014561 8.14555538 8.620216084 8.585402483 8.833830855 8.033979814 8.866340623 8.48780837 8.776575823 8.575525612 196204613 obgE Stress Radiation stress Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 9.084623159 9.294157687 9.218872769 8.725837404 8.515528133 8.383917544 8.300386621 8.016421531 8.34367177 8.34651415 8.636008975 70607994 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sulfolobus acidocaldarius DSM 639 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus;species:Sulfolobus acidocaldarius; 7.165161577 6.945389203 257486659 iro virulence Pseudomonas syringae pv. tabaci ATCC 11528 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas amygdali; 9.193111807 8.820743814 9.172916042 9.25391067 9.042587981 8.940137641 8.935864432 9.332819958 8.952449398 9.128447275 9.152482116 9.227097995 156446817 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.170769196 8.608227965 8.228956725 8.297091137 7.988813612 8.058997789 8.534774335 8.335010702 8.40170406 7.977394622 8.192407966 251788861 pstB Stress Phosphate limitation Dickeya zeae Ech1591 8.359126624 8.250464795 8.250049577 7.754397528 7.668543221 7.893372217 7.629629109 7.936995202 8.070835165 8.352091255 8.237530115 8.384518128 50842399 hrcA Stress Heat shock Propionibacterium acnes KPA171202 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 9.080262407 8.735392235 9.147990812 8.072747684 8.137928646 8.290872459 8.468680977 8.05323747 9.109370433 8.124254131 8.462448192 8.310361531 46881939 pstB Stress Phosphate limitation Listeria monocytogenes str. 4b F2365 8.545453097 8.41641676 8.704528605 7.829692566 7.831612067 7.667372438 7.789495546 7.748696403 7.81316807 7.589312738 8.055254674 219680052 hly virulence hemolysin gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 9.072965523 9.085617644 9.181027405 8.717787366 8.572302898 8.284360752 8.166643923 8.170508713 8.122752663 8.570856986 8.359299386 8.537660077 89360249 Catechol Organic Remediation Aromatics Other aromatics Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.906213049 8.968131457 9.150485636 9.011192201 8.788187571 8.771622945 8.81584828 8.950507095 8.821115649 9.038010198 8.975431731 8.974931852 158334993 CopA Metal Resistance Copper Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;genus:Acaryochloris;species:Acaryochloris marina; 8.168175713 8.181895688 8.247589712 7.771236256 7.753891712 7.948558649 7.68496633 7.588928626 8.036912553 7.587974737 7.680228539 7.764007875 158337618 gyrB other category gyrB Acaryochloris marina MBIC11017 9.609416591 9.635157125 9.798990638 8.997063387 8.906700535 8.897144319 8.726744922 8.646819431 8.745168451 8.781971749 8.821841662 9.283511417 347171 TehB Metal Resistance Tellurium Rhodococcus erythropolis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 9.013451416 8.693687941 8.699144643 8.971772955 8.646789496 8.54259879 9.038465752 8.990514523 8.856595447 8.783592382 8.695096182 8.716148868 262338743 pstC Stress Phosphate limitation Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.137176087 8.192094739 7.507307491 7.498150651 7.600097078 7.450282017 7.408483295 7.640194258 7.213208669 7.472625789 7.564654134 159181853 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 9.466990868 9.713919025 9.509949376 9.219933239 9.402839093 9.747551092 10.07472059 9.220721331 10.18948273 9.539511848 9.77551829 9.573560191 227951636 pstB Stress Phosphate limitation Meiothermus silvanus DSM 9946 8.382081818 8.313191726 8.431904551 7.937175051 8.422201872 8.564192516 8.173757975 8.487660488 199594023 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.922417542 8.285033777 8.421187992 8.994560993 8.672587128 8.626741644 8.78141559 8.596180772 8.41190271 8.652764425 8.642894285 8.427445221 109452498 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.481780177 8.418357868 7.767389144 8.071162899 8.202214292 8.152366207 8.092340624 8.026159887 7.910150026 8.182808414 7.920791465 159889588 TerC Metal Resistance Tellurium Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 8.320666282 7.962560973 8.019069107 7.357469936 7.094844285 7.250453035 6.90464196 7.504682468 6.983527911 7.080407735 7.204354344 118758093 vanA Carbon cycling Carbon degradation Others Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 9.2969436 9.231088929 9.081346142 8.561511297 8.846628282 8.86067409 9.403606377 8.305828086 9.240371762 8.706952863 8.508997496 8.632351723 157846021 sigma_38 Stress Sigma factors Shewanella pealeana ATCC 700345 8.355235117 8.185244182 8.873068275 8.259243514 7.587675773 7.742816397 7.794977219 7.589512286 8.008271443 7.608823116 7.454564836 7.80102734 6460498 pstB Stress Phosphate limitation Deinococcus radiodurans R1 9.461435246 9.606222208 8.406776504 8.354137063 8.37031395 8.4698284 8.453157339 192800686 nmoA Organic Remediation Aromatics Nitoaromatics Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.244067142 8.254136822 7.876319575 7.910326935 8.157322609 8.51316013 8.124972176 8.116661606 7.632517855 7.818690897 7.852539152 118581147 sigma_70 Stress Sigma factors Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 9.311713252 9.140509438 9.159179713 9.646235019 9.193158556 8.63905199 9.4899036 9.49190916 9.415789293 9.376451326 9.217929037 8.969163596 111611107 pcc Carbon cycling Carbon fixation Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 9.087426064 8.586356885 8.678697892 8.75826815 8.576724244 8.628477475 8.492046133 8.505836602 8.760276466 8.59844735 8.398012129 8.456648753 111020851 catechol_B Organic Remediation Aromatics Other aromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.497017636 8.788904633 8.871570349 9.12816067 9.154170476 8.887413535 8.929058525 9.55478362 9.028817842 9.495152789 9.302534066 9.450016291 167839648 czcC Metal Resistance "Cadmium,Cobalt,Zinc" Burkholderia thailandensis MSMB43 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 9.147833665 9.276645026 9.100071535 9.304766059 9.336868154 9.14600813 9.233866694 9.135580554 9.149892919 9.45280195 9.299254397 8.83498632 222450366 gyrB other category gyrB Chloroflexus sp. Y-400-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus; 8.703071138 8.820434537 8.90592629 8.314561714 8.523496818 8.453724488 8.380214493 8.640470453 8.497620298 8.571082799 8.394647142 8.33107336 28379886 katE Stress Oxygen stress Lactobacillus plantarum WCFS1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus plantarum; 8.775437674 8.740450286 8.920102708 7.803950865 7.682783092 7.812100623 7.515632275 7.027734504 7.601830577 7.567216494 7.926860972 254980357 SMR_antibiotics Antibiotic resistance transporter Nitrosomonas sp. AL212 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 8.272028099 8.216740486 8.317998632 8.245331099 8.090776415 8.23091442 7.816651952 8.508685356 8.228256319 7.953834599 8.096795598 7.792962546 15612663 ctsR Stress Protein stress Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 9.497623284 9.208188939 9.712050905 8.630619436 8.391454982 8.466980427 8.029826012 8.085737219 8.366228391 8.389105228 8.415728908 8.7397171 168992628 ArsC Metal Resistance Arsenic Lysinibacillus sphaericus C3-41 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Lysinibacillus;species:Lysinibacillus sphaericus; 8.519277711 8.426735891 8.73118188 7.80695816 7.804206137 7.856890419 7.547923151 7.209996509 7.937003732 7.72609185 7.843076919 8.058413035 189350078 ppk Phosphorus Phosphorus utilization Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 9.795405464 9.706724685 9.677272542 8.995775025 9.041509746 9.218877305 9.336618455 8.982380867 9.485689671 9.406342524 9.520315034 9.62034976 19913902 cmuA Organic Remediation Chlorinated solvents Methanosarcina acetivorans C2A superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina acetivorans; 8.540644366 8.503702359 8.569859392 7.811563835 8.08461031 7.996881951 7.937499381 8.450196741 8.055698492 8.352124968 8.352280526 8.281826132 170721188 akbF Organic Remediation Aromatics BTEX and related aromatics Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.489293979 8.351698159 8.648586285 8.130054832 8.468125241 8.118485893 8.192967208 8.263720354 8.526695773 8.47959822 8.198401805 8.389756106 150036120 sox Sulphur Sulphur oxidation Thiohalocapsa halophila superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiohalocapsa; 8.490811054 8.45920532 8.604282224 8.400808005 7.988198716 8.228767595 7.974311982 8.300160767 8.35070007 8.127397791 8.04166183 8.262650337 21220835 TerZ Metal Resistance Tellurium Streptomyces coelicolor A3(2) 8.498941256 8.423171928 8.141189547 7.966046205 8.328057451 8.564373703 7.904059401 8.096581181 8.157632804 7.979140583 8.472525632 8.009872173 226317421 ppk Phosphorus Phosphorus utilization Deinococcus deserti VCD115 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 8.820925319 8.942687 8.991045068 8.400631801 8.247278366 7.984866548 7.710649844 8.178716141 8.325319927 8.214590969 7.655828854 8.289776134 58039131 ZntA Metal Resistance Zinc Gluconobacter oxydans 621H superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter oxydans; 8.679393769 8.46465356 8.757188563 8.034818409 7.849795284 7.84858935 7.888117393 7.868874932 8.101696281 7.970150485 7.76110623 7.887862861 15889162 TerC Metal Resistance Tellurium Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 9.632110825 9.888917846 9.615565029 8.97693472 9.299243421 9.770361914 10.0685581 9.09944145 10.18076594 9.126416318 9.312276875 9.429605002 66046593 B_lactamase_C Antibiotic resistance Beta-lactamases Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 8.483594524 8.901146482 9.021047365 8.437538713 8.51993294 8.412006907 8.727935009 8.310338935 9.129497049 8.37813542 7.868901477 8.422785619 186473793 MFS_antibiotic Antibiotic resistance transporter Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.726889254 8.841519681 8.963699899 8.192390757 8.243299691 8.492259428 8.772965823 8.027020324 8.658386738 8.116050788 8.021118423 8.326475926 163854555 ophC Organic Remediation Aromatics Aromatic carboxylic acid Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 9.233840399 9.476033549 9.084644277 8.054055526 8.367291007 8.255591117 8.141693472 8.33692498 8.032945319 8.709895204 8.931539514 9.023510953 223893383 sigma_24 Stress Sigma factors bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 8.255579419 8.544490493 8.226365557 8.280823722 8.10156409 8.328894033 7.986055068 8.521378182 7.860847228 7.867104094 7.867725932 91780791 trzN Organic Remediation Herbicides related compound Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.649735158 8.572171135 8.846717705 8.143481671 7.911901265 8.12128005 7.969791642 7.70998514 7.999272602 7.851542946 8.15956267 21646979 sox Sulphur Sulphur oxidation Chlorobium tepidum TLS superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 8.385933527 8.420853362 8.562546537 8.082714529 8.059162866 7.916673349 7.820762951 7.524384657 8.289793407 7.616042897 7.485014665 8.049780449 114226687 pstB Stress Phosphate limitation Alkalilimnicola ehrlichii MLHE-1 8.989970514 8.645909203 8.875429189 8.233137671 8.363680129 8.522251386 8.187549773 8.32304357 8.441836844 8.001302431 8.341855243 8.297781328 12642577 cbb Bioleaching Carbon fixation Acidithiobacillus ferrooxidans 8.25624584 8.501467263 8.133203901 8.173392132 7.511143475 7.738263083 7.697064469 7.801545865 8.142263446 7.942896391 7.518891671 7.587826852 147847237 proV Stress Osmotic stress Synechococcus sp. WH 7803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.112146072 8.091756861 8.119853421 7.54242859 7.438396201 7.702477839 7.667250357 7.589663221 7.942479944 7.192632562 7.372403761 7.687390323 39936759 MFS_antibiotic Antibiotic resistance transporter Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.410117758 8.860732802 8.76551197 8.843823674 8.497897048 8.382837509 9.390470214 8.14330781 260223621 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.319598981 8.056559424 8.723426017 8.503129177 8.581407328 8.362612514 8.505379298 9.148711149 8.446503049 8.932576852 8.85697401 9.015704769 15644906 ppx Phosphorus Phosphorus utilization Helicobacter pylori 26695 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter pylori; 8.314187275 8.348847879 8.190008164 7.814782491 7.842781999 7.758936969 7.89569152 8.191464595 8.2607141 7.953900564 8.175890438 256830427 phoB Stress Phosphate limitation Desulfomicrobium baculatum DSM 4028 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfomicrobiaceae;genus:Desulfomicrobium;species:Desulfomicrobium baculatum; 9.086814288 9.001548287 9.067877225 8.618555474 8.618270897 8.584354837 8.527915518 8.546520189 8.59803235 8.449466146 8.481426052 8.737785337 167841194 type_III_secretion virulence secretion Burkholderia thailandensis MSMB43 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 8.918556156 9.199221052 8.738891253 8.140945784 8.040440987 8.283507671 8.646155134 9.537407636 8.187117907 8.311529098 8.407651228 13249561 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.521159024 8.928560947 9.141569535 8.877623641 9.043611006 8.889878649 8.847679596 9.189589023 8.887982038 9.156017028 8.80146557 8.630299317 145575474 ChrA Metal Resistance Chromium Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 9.942061815 9.611030621 9.603536716 9.626760287 9.490635321 9.168384 9.629964929 9.681700729 9.52876462 9.585294581 9.674199997 9.463705637 167352768 ChrA Metal Resistance Chromium Shewanella halifaxensis HAW-EB4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella halifaxensis; 8.35254854 8.3053477 8.448737083 7.997147515 7.921473856 7.649284392 7.656280178 7.820317716 7.905097057 8.057073658 7.728947519 7.995008285 184192760 bclA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.902218627 8.735145029 8.908456437 8.766513943 8.808484118 8.622662475 8.427987172 8.839621469 8.525190399 8.855382548 8.600129947 8.747095566 145194848 endoglucanase Carbon cycling Carbon degradation Cellulose Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 8.400652566 8.223143674 8.323029918 7.894957061 7.886878959 7.767822153 7.975902165 7.695410862 7.744919957 7.903266349 7.733325495 254950829 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Dyadobacter fermentans DSM 18053 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 8.179937585 8.305935518 7.653105074 7.671599317 7.530504296 7.151401375 6.886528142 7.843256072 7.447651094 7.540847227 7.635628437 55978127 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9.704386625 9.718340463 9.762670497 8.826794367 8.918599116 9.042736282 9.371297318 8.982665584 9.099045229 8.941165696 9.13126191 9.225033951 108765844 mer Metal Resistance Mercury Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 8.955425518 8.950738542 8.989106876 8.737329649 8.947983219 8.817476135 8.695820825 9.237679286 8.395334518 8.932004154 8.871907561 9.238961412 196480602 fnr Stress Oxygen stress Phenylobacterium zucineum HLK1 8.265245413 8.591689387 8.710312274 8.524572503 8.741965035 8.626599754 8.854867142 9.014283496 8.630694287 8.999211057 8.928061823 8.695375365 163863952 amyA Carbon cycling Carbon degradation Starch Bacillus weihenstephanensis KBAB4 8.572695187 8.118697034 8.363539202 7.820455376 7.627263191 7.63580246 7.767569134 7.560879059 7.878365519 7.602270932 7.369028216 7.896009236 217038849 glnA Stress Nitrogen limitation Rubrobacter xylanophilus 8.657882802 8.711687589 8.787597299 8.761492382 8.611607844 8.173424841 8.394100916 8.66803438 8.903546419 8.48057999 7.98397401 8.252769383 85096130 nagG Organic Remediation Aromatics Aromatic carboxylic acid Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 9.057474398 9.165431699 9.211257525 8.439710728 8.095400497 8.719329266 9.046931986 8.533173286 8.640714658 8.489416847 8.619551504 8.631630397 56478340 pilin virulence pilin Aromatoleum aromaticum EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 8.359422534 8.290168049 8.742657926 8.385173258 8.232872896 8.215625761 7.749749064 7.852680086 8.390299612 7.845096542 7.925978119 8.034873194 226327280 phoA Stress Phosphate limitation Proteus penneri ATCC 35198 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus penneri; 7.873576044 7.973968889 8.022111056 8.164567129 8.33172696 8.282377046 8.298530732 8.321969393 8.558320216 2921435 BADH Organic Remediation Aromatics Other aromatics Rhizobium tropici superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 8.875099761 9.220336837 8.921738933 9.085661994 8.88231078 8.63275756 9.157354476 9.071890819 9.039344118 9.017085234 9.093997079 8.938523799 239905408 ahpC Stress Oxygen stress Desulfovibrio magneticus RS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio magneticus; 8.694088192 8.517853278 8.49582621 7.951686801 7.856048995 8.291286426 7.83925554 8.336665536 7.691688275 7.972871699 7.652176466 156232897 Catechol Organic Remediation Aromatics Other aromatics Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 9.133926219 9.157050586 9.245164139 8.111976977 8.210891609 8.469902295 8.716660412 8.295187712 9.030521604 8.67711233 8.741847417 269928512 cap virulence capsule Sphaerobacter thermophilus DSM 20745 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 8.569665536 8.349986574 8.364337325 8.508099355 8.440997634 8.370896151 8.656605776 8.702988886 8.481582479 8.472682566 8.530081246 8.596415416 63257281 iro virulence Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 8.486635573 8.724949017 8.356511563 8.574364978 8.744141988 8.719137878 9.188902061 8.900883067 9.430369341 8.833006183 9.00664258 8.953189241 213961911 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Capnocytophaga sputigena Capno superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga sputigena; 8.495170985 8.603218799 8.942710431 8.472944043 7.889638476 7.756985572 7.694337419 7.777585406 7.865527846 8.020230118 8.262212183 8.108253482 222081775 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.828454988 8.847884265 8.748598975 8.856412432 8.826410947 8.5726915 8.80065099 9.189144937 8.748054434 9.063062609 9.281857151 9.314524631 159141474 glucoamylase Carbon cycling Carbon degradation Starch Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 9.322566151 9.37724471 9.342137597 8.751038064 8.966440907 9.169043682 9.107501827 9.157734373 9.448958283 8.850091055 9.464942208 9.017571225 161390294 obgE Stress Radiation stress Phaeobacter gallaeciensis BS107 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 8.365882239 8.129557853 8.460521766 8.401314061 8.423467002 8.65691525 8.89031184 8.136243797 145570252 Catechol Organic Remediation Aromatics Other aromatics Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 8.21664636 8.180553145 8.033383335 7.830932549 7.896739223 8.044100973 7.623542724 7.884933175 8.219772165 7.642510718 7.940375591 7.757734206 110818063 alkK Organic Remediation Others Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.550162461 8.569237851 8.626735046 8.043566649 8.606659135 8.627464529 8.768290112 7.477292926 8.825877575 7.955666254 7.728644007 8.131688452 114330115 CadA Metal Resistance Cadmium Nitrosomonas eutropha C91 9.329146612 8.985626077 9.455553275 8.865046685 8.606443997 8.407694979 8.428876033 8.478476318 8.632883637 9.094718657 14027653 ppx Phosphorus Phosphorus utilization Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 9.52384852 9.48396388 9.285968085 9.386825339 9.376728491 9.040206811 9.191120396 9.445799483 9.50212501 9.476308684 9.524791049 9.314214486 170121561 NiR Nitrogen Assimilatory N reduction Escherichia albertii TW07627 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 7.392951775 7.845301015 8.05391681 7.51258879 7.803158592 7.804815238 7.423638029 7.931461453 7.412345658 256679004 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Streptomyces sp. SPB78 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.998725982 8.961034563 8.53820769 8.740005653 8.183284003 8.568615485 9.066859799 8.836936445 8.383214198 8.340557571 8.318772346 8.362155375 88182477 tftH Organic Remediation Aromatics Chlorinated aromatics Chaetomium globosum CBS 148.51 9.466107832 9.058124551 8.856889245 9.746277989 9.774501586 9.496487673 9.332954404 9.904017285 9.676320451 9.492152463 9.32506548 9.645758906 167589870 B_lactamase_A Antibiotic resistance Beta-lactamases Burkholderia ubonensis Bu superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ubonensis; 8.287545307 8.339941399 8.12440415 8.657559715 8.236375315 7.769215116 8.583291312 8.218050347 8.521432326 8.467760335 8.542454466 67516471 exochitinase Carbon cycling Carbon degradation Chitin Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 6.809149043 7.256332221 6.896681164 6.973803198 7.637831016 7.03078487 7.081683956 109675097 B_lactamase_A Antibiotic resistance Beta-lactamases Yersinia frederiksenii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia; 8.571110452 8.57514687 8.598838394 8.678291675 8.757908224 8.619928058 8.783800745 9.068689818 8.539526205 8.786925851 8.458135103 8.330476566 148258384 czcC Metal Resistance "Cadmium,Cobalt,Zinc" Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.39301333 7.808530408 7.50175387 7.831372376 7.517094283 8.270484017 7.449447874 8.025346892 7.515421178 116671937 fnr Stress Oxygen stress Arthrobacter sp. FB24 10.29314132 10.60861364 10.49662294 9.681458746 9.771517688 10.1974203 10.52527254 9.932461979 10.45713362 10.02324919 10.05932559 10.21292316 219869024 cytochrome Energy process Energy process Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 8.680360053 8.876904305 9.004031675 8.922198346 8.703827751 8.66062367 8.973414895 8.900505893 8.863059815 9.099402496 8.899131087 8.720205091 154299891 CopA Metal Resistance Copper Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 8.778713346 8.764079242 8.656282167 8.171919912 8.036405416 7.974628247 7.57718071 7.667520649 7.819780428 7.834701546 8.076710107 60552675 mdlB Organic Remediation Aromatics Aromatic carboxylic acid Xenopus tropicalis superkingdom:Eukaryota;kingdom:Metazoa;phylum:Chordata;class:Amphibia;order:Anura;family:Pipidae;genus:Xenopus; 9.558747953 9.70013716 87199893 Catechol Organic Remediation Aromatics Other aromatics Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 8.415577701 8.41434506 7.855042237 7.701982502 7.449951406 7.421952685 7.714640409 7.767259138 7.861554419 7.928655401 7.404453746 84664410 POBMO Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2654 7.847707929 7.814311974 7.426633468 7.193449083 7.513822492 7.459915236 7.013936202 7.563689645 7.067692173 7.605508 7.038700387 32474703 pstB Stress Phosphate limitation Rhodopirellula baltica SH 1 8.346718316 8.266083735 7.675119842 7.692119612 7.736063004 7.433485538 7.361137051 7.894013539 7.49354944 7.533022619 7.656917876 146340124 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.756164683 8.852422288 8.966493576 8.538990381 8.339945675 8.322310112 8.507962014 8.323819193 8.407476011 8.36359899 8.298912994 8.555439687 223485028 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Brevundimonas sp. BAL3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas; 8.238542648 8.069287014 7.702753377 7.464837043 7.899508693 8.131336031 7.805627051 8.014697342 7.90913071 7.770005627 7.910597364 58001587 pstB Stress Phosphate limitation Gluconobacter oxydans 621H 8.518142463 8.917470583 8.40785995 9.042923053 8.836658035 8.544713354 56314040 sigma_24 Stress Sigma factors Aromatoleum aromaticum EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 8.736633361 8.430132421 8.484588365 7.937446227 8.266817745 8.336206354 8.423764322 8.119348006 8.432329297 8.213161314 8.444989803 8.132899989 89343882 proO Organic Remediation Aromatics Other aromatics Rhodoferax ferrireducens DSM 15236 8.630221194 8.253850737 8.162088367 8.191883978 154310805 nitA Organic Remediation Aromatics Other aromatics Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 8.768946112 8.64256501 8.399932892 7.886795457 7.778549945 7.464363907 7.538163204 7.496753872 7.419402741 7.488176102 7.369315791 7.769606157 160931195 dsrA Sulphur sulfite reductase Clostridium leptum DSM 753 9.208278471 9.008001048 8.330939962 8.270031771 8.156356472 7.897148124 8.043493038 8.387005098 7.956245767 7.93693178 8.295352978 212171514 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 8.306448339 8.560036492 8.211179771 8.082445612 8.305017065 8.653002363 8.556825202 8.536372824 8.699309127 8.370021627 8.401992775 8.361040274 58002934 vanA Carbon cycling Carbon degradation Others Gluconobacter oxydans 621H superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter oxydans; 8.466896646 8.409314636 8.23441106 7.664217824 7.547974158 8.101654065 8.079486061 7.251420402 7.631709439 7.803760462 7.667847685 223895056 amyA Carbon cycling Carbon degradation Starch bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 8.553472504 8.613942349 8.797032753 7.948863061 7.79042156 7.472293189 7.243015367 7.392691738 7.765989415 7.626115887 7.914173641 224540390 ara Carbon cycling Carbon degradation Hemicellulose Bacteroides cellulosilyticus DSM 14838 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 8.120504432 8.280943276 8.309668234 7.483530847 7.945598327 7.984398256 8.115330074 8.153199518 8.223586667 8.075187881 8.226490132 312237 nifH Nitrogen Nitrogen fixation Rhodobacter capsulatus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 10.90045622 11.00207737 10.92160404 10.20713233 10.98038628 10.9597113 10.82509468 11.04933431 10.75401007 10.89781776 10.84402192 257093345 pstB Stress Phosphate limitation Candidatus Accumulibacter phosphatis clade IIA str. UW-1 9.478004303 9.673573797 9.317394033 8.890884145 8.613434468 8.986483026 9.726848765 9.197470585 9.115718569 9.042873385 9.167837006 9.027902947 207084799 pimF Organic Remediation Aromatics Aromatic carboxylic acid Campylobacterales bacterium GD 1 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales; 8.75109725 8.639338174 8.699942072 8.22959328 8.218919505 8.179081776 8.053700355 8.325962708 8.523695011 8.653105606 8.37842645 8.436355717 256686243 glnA Stress Nitrogen limitation Jonesia denitrificans DSM 20603 8.765299475 8.56020476 8.88760658 8.460835521 8.400205112 8.223193038 8.36453685 8.802829689 8.609198767 8.727118651 8.659912184 8.766303303 160366739 CopA Metal Resistance Copper Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.388891095 8.310761103 7.787329869 8.00179124 7.867674796 8.207650977 7.979509914 7.915039692 8.100451515 7.798541275 161161291 cydA Stress Oxygen limitation Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 8.708921819 8.892228897 8.849230368 8.505105262 8.333785915 8.209747948 8.441000088 8.353032255 8.274333449 8.261222097 8.424300045 8.515175196 148553878 fnr Stress Oxygen stress Sphingomonas wittichii RW1 9.448797781 9.519973406 9.601198424 8.865133237 8.912957087 8.861084897 8.726032832 8.563232628 8.658419342 8.661383185 8.831289478 9.049388808 70673019 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.092962709 7.680727206 6.849901429 7.104549818 7.183995455 6.814134106 7.420225 7.396377147 7.352269949 7.510586526 118171848 TehB Metal Resistance Tellurium Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.596432288 8.524844286 9.019540985 8.354183198 8.058403713 8.343943044 8.252877376 8.176588374 8.314303838 8.270755276 8.079702734 8.355311657 39934850 4HBH Organic Remediation Aromatics BTEX and related aromatics Rhodopseudomonas palustris CGA009 8.791991636 8.492892153 8.803830021 8.71274631 8.762049523 8.839342611 8.878981899 8.733805002 9.006990048 9.059073721 8.847086262 197087608 phoB Stress Phosphate limitation Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 8.172275241 8.334173045 8.024186231 7.797921538 7.713072116 7.531690319 7.902169602 8.002064521 7.732406921 7.520241367 106771910 pcc Carbon cycling Carbon fixation Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 8.691763491 8.854338813 8.588053119 9.005918025 9.012609924 8.662636843 8.644032043 9.109463659 8.619639569 8.944783319 8.541798183 8.765768402 270276797 xylA Carbon cycling Carbon degradation Hemicellulose Bifidobacterium gallicum DSM 20093 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 8.763807467 8.567639481 8.556156216 8.352175097 8.188641548 8.149602877 8.165437903 8.416871382 8.38532347 8.250403079 8.198995428 8.363500785 34494552 nirK Nitrogen Denitrification Haloferax lucentense superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax; 8.796462454 8.049293263 8.584834377 8.387829831 8.268067549 8.23197666 8.3091138 7.81706514 8.460310335 8.318500939 7.860157259 89094495 SMR_antibiotics Antibiotic resistance transporter Oceanospirillum sp. MED92 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Neptuniibacter; 9.242177092 9.273621153 9.447374738 8.658959166 8.666710844 8.709308564 8.595852286 8.632490427 8.456225105 8.611037382 8.713194482 8.850450208 92910015 adpB Organic Remediation Pesticides related compound Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 10.58150453 10.77526924 10.65164535 10.81429861 10.78962975 10.83738627 10.57257264 10.59338455 10.38600548 11.04900272 11.05612125 11.00850943 126629723 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 8.260071913 8.334959771 8.778370636 9.034039395 9.003856042 8.657256184 8.90008811 8.969686094 8.747693842 8.84978866 8.590696709 8.385470888 114798301 pimF Organic Remediation Aromatics Aromatic carboxylic acid Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 7.758355637 7.726367717 7.409711053 7.005592235 7.571192459 7.783560068 7.185952374 7.450247206 7.274890746 78165957 obgE Stress Radiation stress Chlorobium luteolum DSM 273 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon luteolum; 8.787946534 8.329203318 8.822082103 8.786147403 8.756698595 8.532563095 8.984590967 8.670443597 8.775474697 8.167395067 189495692 nitA Organic Remediation Aromatics Other aromatics Chlorobium phaeobacteroides BS1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 7.435884525 7.199035603 7.416405317 6.990601005 6.935388176 7.806847632 7.656058792 7.273950821 7.29313532 197103380 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 8.001332496 7.800141852 7.612844195 7.825643651 7.820868236 8.064406234 7.950770167 7.760224253 8.016655112 120323171 ahpC Stress Oxygen stress Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 8.205796072 8.199920009 8.247211562 7.4093828 7.768707357 7.655245807 7.129926443 7.332555114 7.445261051 7.779171214 260651277 ara Carbon cycling Carbon degradation Hemicellulose Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 9.238998072 8.871779819 9.190244122 8.504865633 8.58480793 8.699759355 8.521521314 8.508384231 8.750022207 8.735982302 8.915497214 8.696475823 116743229 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9.573097434 9.584310719 9.369110039 9.118139688 9.085533466 8.68678339 9.267519363 9.337306123 8.849720023 9.177381213 9.197619323 8.969589217 41408716 narJ Stress Oxygen limitation Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 8.614982969 8.637887036 8.719788188 8.910691157 8.853930804 8.532540788 8.582461993 9.163864695 8.874601414 8.901413558 8.814782279 8.972807752 270508645 SMR_antibiotics Antibiotic resistance transporter Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 8.918164956 8.934899433 8.813085029 8.680121894 8.732014537 8.675963681 8.623408473 8.803804213 8.547217014 8.979103588 8.758410338 8.814433865 86740871 grpE Stress Heat shock Frankia sp. CcI3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.539564028 8.784570056 8.42697217 8.192844809 8.419498014 8.377777767 8.471393393 8.43712211 8.740953704 8.863250081 8.496130516 167840848 iro virulence Burkholderia thailandensis MSMB43 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 9.088599418 8.926139939 9.005217306 8.401503852 8.520304393 8.616391992 8.225731045 8.529183157 8.406187341 8.535564782 8.543584222 169820478 type_III_secretion virulence secretion Burkholderia cenocepacia MC0-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 8.518000458 8.635758876 8.532626501 8.353678553 8.368249788 8.293386317 8.618857853 8.532479873 8.681774234 8.553243256 8.638893702 8.556555568 227496749 fnr Stress Oxygen stress Actinomyces urogenitalis DSM 15434 8.417533572 8.792969242 8.622385648 8.356973146 8.633897675 8.548823499 8.401089122 8.944511172 8.331191987 8.875030773 8.659647831 8.428829154 37605066 phytase Phosphorus Phosphorus utilization Penicillium sp. superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 8.707467239 8.049670803 8.527874104 8.277503549 8.203274259 8.572941501 8.317949957 8.38688065 8.370573615 8.369367315 7.876617654 21673727 pstB Stress Phosphate limitation Chlorobium tepidum TLS 8.757494299 8.77736622 8.789992785 8.333900426 8.262470239 8.303871502 8.328294249 8.296342487 8.301753573 8.242477932 8.285368576 8.523595397 50542688 rubisco Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.419354976 8.453396031 8.400795145 8.650868569 8.589094922 8.570582932 8.714936013 8.801985299 8.716082698 9.072109341 8.956794317 8.828623581 108779557 fnr Stress Oxygen stress Yersinia pestis Antiqua 8.513810443 8.467987774 8.517187839 8.258542425 8.039295587 7.639389988 7.547311926 7.66628738 117675813 gyrB other category gyrB Subtercola frigoramans superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Subtercola; 7.088607728 6.854185542 7.297314084 6.874737136 6.56429675 7.510467585 7.02228592 6.804850376 7.604044344 34419197 ureC Nitrogen Ammonification Haloarcula marismortui superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula; 8.412540309 8.146272601 8.376489469 8.320773941 8.020008873 8.202010252 8.268887171 8.010573693 8.321823639 8.129942133 8.054210185 7.892669 126734728 ureC Nitrogen Ammonification Roseobacter sp. CCS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.371698013 8.591695649 8.499258767 8.000944629 7.832172874 7.774850687 7.711084699 8.590006634 8.037219824 8.612457356 7.980515302 7.914860277 133910688 hrcA Stress Heat shock Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 8.296386903 8.269531547 7.716823352 7.980143991 7.774868351 7.82021736 7.696030928 7.91889778 7.708417622 7.915846577 7.76179174 212703782 nrfA Nitrogen Dissimilatory N reduction Desulfovibrio piger ATCC 29098 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio piger; 9.270610061 9.257709217 9.091431138 8.714934745 8.313906329 8.549190977 9.210304539 8.820157197 8.545892552 8.626295176 8.440948879 8.548020629 82737823 nmoA Organic Remediation Aromatics Nitoaromatics Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.41699261 8.548551966 8.922740267 7.826461669 7.983797801 8.074233581 8.357760035 7.944968181 8.743459678 7.793015531 7.882132881 7.963720754 255067063 grpE Stress Heat shock Neisseria sicca ATCC 29256 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria sicca; 9.101469187 8.890355755 9.014105168 9.200624654 9.161531941 8.866610107 9.109055991 9.642659918 9.238429476 9.416904943 8.908120127 9.349889391 254703988 fnr Stress Oxygen stress Brucella suis bv. 3 str. 686 8.104479324 8.100967515 8.281245909 7.811375947 8.306274516 8.148642049 7.970899663 8.012517159 7.905237402 114326779 CorC Metal Resistance Cobalt Granulibacter bethesdensis CGDNIH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 7.986846161 8.108835633 7.997927391 7.577190267 7.712206494 7.475848941 7.563423335 7.798557616 7.883015218 7.749192106 7.632264864 7.508931137 171852756 ureC Nitrogen Ammonification Corynebacterium urealyticum DSM 7109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium urealyticum; 8.711089964 8.378964248 8.368873433 8.067203777 7.916738961 7.937557444 8.368572616 7.860944033 8.539690204 7.943928432 7.874841327 7.906615395 220721130 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 8.818048287 8.665154489 8.61850933 8.20919128 8.177060545 8.451175073 8.504753139 8.501011247 8.676307938 8.283903298 8.247836009 8.486994706 220700565 nahA Organic Remediation Aromatics Polycyclic aromatics Aspergillus flavus NRRL3357 8.862976268 9.042520207 8.666636812 8.566473683 8.843436915 8.534468454 8.786536247 8.899827066 8.547027481 8.917130179 8.919742164 8.722222597 156740540 cellobiase Carbon cycling Carbon degradation Cellulose Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 8.205612822 8.301113172 8.201487431 7.962584335 7.858330978 7.856809879 7.813564892 8.221948858 8.199440779 8.084453799 7.84881139 7.885040559 124515682 cytochrome_b Bioleaching Electron transport Leptospirillum sp. Group II UBA 9.074178601 9.043610401 8.995084115 8.523761657 8.486368809 8.412726741 8.032372123 8.177785378 8.270645787 8.170657988 8.252838531 8.538768728 196234461 sigma_32 Stress Sigma factors Chthoniobacter flavus Ellin428 8.710159487 8.766746578 8.546100847 8.572908335 8.648097224 8.451736084 8.579881722 9.268286953 8.55197731 8.983309169 8.630316716 8.687210992 153892922 cellobiase Carbon cycling Carbon degradation Cellulose Opitutaceae bacterium TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 8.216187721 7.974548294 7.688641878 7.766497266 7.739970431 7.464701832 7.531498858 7.152984518 7.292440796 7.488321504 89897074 glnA Stress Nitrogen limitation Desulfitobacterium hafniense Y51 8.277832649 8.158872012 8.395265605 7.578812563 7.88255518 7.544068246 7.184465206 7.773628461 7.567440431 7.75244609 158138865 narG Nitrogen Denitrification uncultured bacterium 8.617814275 8.485756992 8.502964119 8.377352094 8.284341307 8.025300861 8.253681631 8.347487371 8.7365502 8.303393823 8.245787397 8.245507539 82945310 phoB Stress Phosphate limitation Magnetospirillum magneticum AMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 11.45541636 10.85543548 10.68407559 11.22506724 11.17223254 11.06285167 10.94871335 10.81938494 11.09112732 11.14016639 11.11246841 10.86687233 77463325 ppx Phosphorus Phosphorus utilization Rhodobacter sphaeroides 2.4.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 9.118607485 9.01575418 8.994475195 8.879317877 8.862307894 8.616331829 8.587047003 9.085618444 8.598846687 8.884378624 8.646983494 8.990156424 163644652 PceA Organic Remediation Others Dehalococcoides sp. enrichment culture clone KS55(KSRdA15) 8.546112988 8.761706384 8.928175129 8.257406068 8.09008873 8.064655648 7.770850796 8.048552144 8.070419369 8.085707381 8.034217777 8.175291461 220923067 iro virulence Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 8.196090241 8.279778826 7.693069288 7.901790329 8.069836324 8.233963751 7.666482258 7.992191333 7.625852328 7.579232832 7.818831764 89350414 ZntA Metal Resistance Zinc Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.768528619 8.386607869 8.974624485 8.844379547 8.445483548 8.22685215 8.380168927 8.487950299 8.212868676 8.520884081 8.731678812 8.504985057 90107789 fnr Stress Oxygen stress Rhodopseudomonas palustris BisB18 9.401357206 8.423008596 8.706181714 8.696917025 8.550585083 8.850344416 8.508301203 8.691225788 8.510723706 8.307641454 8.504368818 227113828 AceA Carbon cycling Carbon degradation others Pectobacterium carotovorum subsp. brasiliensis PBR1692 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 7.436819728 7.484856891 7.328176423 7.473465294 7.473817641 7.099184476 7.433393154 7.306127831 27382195 fnr Stress Oxygen stress Bradyrhizobium japonicum USDA 110 8.645077147 8.432392806 8.868590937 8.191387452 8.141982436 8.190647754 8.027998314 8.570244245 8.29249666 8.392630917 8.377015518 8.385384016 161160084 pcpB Organic Remediation Herbicides related compound Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 9.054613808 9.299561147 9.144009886 8.757434435 8.957416169 9.269064301 9.660520486 9.225888475 9.00660212 9.007067423 9.10499946 8.968558973 119951116 TehB Metal Resistance Tellurium Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 8.81189303 9.210505376 9.270548939 8.937836352 8.852195159 8.81004903 8.598961103 8.927010716 8.511091895 8.72217684 8.787770511 9.124676586 46307950 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.377843187 8.117226535 8.55990995 7.39690356 7.897246436 7.939007462 7.829875944 7.262442221 7.941272568 7.484194024 8.032320518 7.892774145 254417919 pstB Stress Phosphate limitation Brevundimonas sp. BAL3 10.05320432 9.936730696 10.02275297 9.628394495 9.497381019 9.487911908 9.857478996 9.44919523 10.00750979 9.504519229 9.652945069 9.458490447 69151647 alkB Organic Remediation Other Hydrocarbons Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 9.646797579 9.503838826 9.531378946 9.758215046 9.57208868 9.410253859 9.585023519 9.493374116 9.347630306 9.314112426 9.259309096 9.513129771 76666836 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium 9.008391468 9.124275682 9.120449292 9.046662887 9.289717775 9.126882181 9.173955885 9.165389758 9.510274476 9.458621317 8.923340325 261409452 endochitinase Carbon cycling Carbon degradation Chitin Geobacillus sp. Y412MC10 8.734227676 8.752024727 8.838980223 7.870606639 7.832689847 7.800159391 7.357089665 7.094160871 7.945430673 7.771002206 7.624182815 7.943066075 91798387 iro virulence Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 7.829685831 7.978055509 7.873482488 7.320513866 7.7335566 7.996518764 7.685658726 7.535165743 7.79448582 24373227 cytochrome Energy process Energy process Shewanella oneidensis MR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella oneidensis; 9.853637192 9.766090736 9.529147386 9.937332009 9.52388792 9.032893899 9.917783405 9.799687415 9.707775621 9.818617197 9.740086882 9.679232345 72388587 gyrB other category gyrB Psychrobacter immobilis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 8.904279486 9.148199678 9.05555428 8.705552965 8.628685096 8.697474721 8.934161346 8.701239306 9.291730326 8.865769618 9.194496335 9.040046649 121604803 PobA Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 9.362791713 9.014883745 8.97262802 9.564326877 9.369392381 9.10869934 9.608377059 9.400913892 9.662794081 9.430618977 9.354366715 9.156812054 167646453 sigma_24 Stress Sigma factors Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 9.950468284 10.05713065 10.0139629 9.580374093 9.683409697 9.513658142 9.566130098 9.987119493 9.645988872 9.794553201 9.705894296 9.905080748 83949442 sigma_32 Stress Sigma factors Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 8.352890293 8.28854578 8.207830378 7.745686505 7.839414451 8.40979242 7.886550402 7.602235417 8.271771928 209497829 phn Organic Remediation Herbicides related compound Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.193310675 8.138211749 8.206137059 7.609062627 7.543620457 7.741839668 7.997508476 7.604190833 8.100209323 7.743691552 7.850949576 7.793795075 119400912 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 8.624148556 8.529239876 8.749233662 8.66245825 8.460492754 8.676801357 7.78851536 8.110520066 8.362746619 8.389671165 8.573283596 8.506810746 179344910 nagG Organic Remediation Aromatics Aromatic carboxylic acid Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 9.081147758 8.799338628 8.687398714 8.753786449 8.563067298 8.449487671 8.711447032 8.708910936 8.610490685 8.72419756 8.519833552 8.725935477 187924691 nitA Organic Remediation Aromatics Other aromatics Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8.154947721 7.826288887 7.68080727 7.341834502 7.039979135 7.162606466 7.889148229 196245778 gyrB other category gyrB Cyanothece sp. PCC 8802 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.611044401 8.735134178 8.708958026 8.252554605 8.24321564 8.251265165 7.901180915 7.774246468 8.054529454 8.019756069 7.775622399 8.157271486 212633602 dmsA Organic Remediation Others Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 9.085746159 8.954593997 9.039296712 8.366193924 8.467260113 8.396598109 8.082863109 8.018854708 8.502240037 8.050030995 8.180695225 8.563318422 84787692 AceB Carbon cycling Carbon degradation others Erythrobacter litoralis HTCC2594 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 8.668702917 8.793041056 8.386918186 8.502827328 8.553669467 8.388823384 8.335558946 8.451765656 8.691878692 8.492711561 8.493552723 8.460958572 184199345 nirK Nitrogen Denitrification uncultured denitrifying bacterium superkingdom:Bacteria; 8.993306324 8.943106345 9.0989333 8.688243699 8.737132599 8.820493922 9.074869751 8.313400184 9.066173741 8.767112693 8.998446743 8.926332445 171915931 MFS_antibiotic Antibiotic resistance transporter Verrucomicrobium spinosum DSM 4136 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Verrucomicrobium;species:Verrucomicrobium spinosum; 8.795297316 8.554271629 8.747583937 8.395714801 8.355164139 8.36583423 8.033553421 8.159389626 8.201536182 8.130906859 8.179030163 8.430694304 15805220 pimF Organic Remediation Aromatics Aromatic carboxylic acid Deinococcus radiodurans R1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 8.737982845 8.569160866 8.619403489 8.71108468 8.571836261 8.756886944 8.899267545 9.037537043 8.689586602 8.961070789 8.888609534 9.042558566 210159972 ppk Phosphorus Phosphorus utilization Collinsella stercoris DSM 13279 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella stercoris; 8.538822554 8.200949456 8.743487202 8.215984878 8.26758456 8.249701768 8.317513419 7.694386326 8.38896147 7.904642943 7.75013064 8.185808465 197723216 ureC Nitrogen Ammonification Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 9.478774296 9.45803212 9.461931872 8.775212907 8.721100119 8.902599214 8.70626837 8.420210592 8.901978805 8.737789994 8.770515798 8.989904594 159184123 gyrB other category gyrB Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.132931653 7.916026496 7.952469431 7.953041076 8.225620895 8.412091794 7.903287815 7.852326349 7.882034011 225159269 sigma_70 Stress Sigma factors Opitutaceae bacterium TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 8.690940907 8.79885952 8.234389156 8.681200342 8.143134874 8.48628212 8.887657179 8.028557622 8.602896444 7.392869919 7.662057429 7.682642961 133911102 linB Organic Remediation Pesticides related compound Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 8.595775621 8.786197725 8.637537525 8.769231601 8.607633234 8.381423016 8.637167285 8.957816264 8.514364104 8.903213136 8.499973479 8.722405748 189427596 gyrB other category gyrB Bifidobacterium longum DJO10A superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 8.435917204 8.074402445 8.568159682 7.909861781 7.923447091 8.143533074 7.96044655 7.614594625 8.600871592 7.789815004 7.684298033 8.010590913 58268820 glx Carbon cycling Carbon degradation Lignin Cryptococcus neoformans var. neoformans JEC21 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Tremellomycetes;order:Tremellales;family:Tremellaceae;genus:Filobasidiella;species:Filobasidiella neoformans; 8.5294216 8.31203936 8.431262003 7.244387885 7.419674591 7.547900512 7.448190562 7.509171309 7.379623911 7.240868792 7.627466631 110285806 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 8.917228658 8.3140117 8.868561917 8.528544083 8.47954474 8.164985966 8.5858201 8.90276791 8.685518927 8.793819878 8.519485041 8.659885163 58039736 hrcA Stress Heat shock Gluconobacter oxydans 621H superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter oxydans; 8.402947644 8.273768045 8.255567599 7.621888669 7.732160871 8.016453621 8.108154839 7.834924957 8.145051813 8.016380331 7.920405949 7.897049272 99037467 bclA Organic Remediation Aromatics Aromatic carboxylic acid Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.995237696 8.475401328 7.707321009 7.574567986 7.646633612 7.483396918 7.422063044 8.058773792 7.371976255 7.443849526 7.73043815 83647442 pimF Organic Remediation Aromatics Aromatic carboxylic acid Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 9.264187189 8.962732389 9.099914926 8.700560518 8.632156185 8.682735458 9.067003639 8.712975583 8.982727629 8.681650828 8.620062611 8.811879884 67915268 aclB Carbon cycling Carbon fixation Chlorobium phaeobacteroides BS1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 9.242930146 9.13678204 9.348861238 8.619149055 8.437008283 8.416410468 7.988450657 8.063611304 8.341716955 8.244189338 8.6333574 153893340 CopA Metal Resistance Copper Opitutaceae bacterium TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 8.131409714 8.238697813 8.199607902 8.170935818 8.12241714 7.981736279 7.795032981 8.277880381 8.533163596 8.449073399 7.876688207 7.957110882 91794849 sigma_32 Stress Sigma factors Shewanella denitrificans OS217 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella denitrificans; 7.834127477 8.10791916 7.506492673 7.573920283 7.835909308 8.459857188 8.06148457 7.798281691 7.991575525 52216903 catB Organic Remediation Aromatics BTEX and related aromatics Bacteroides fragilis YCH46 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 8.578533984 8.664338308 8.597552706 8.074935971 7.962902458 8.066992043 7.848388976 7.714093001 8.169504772 7.883923427 7.693754959 8.079058361 91692527 iro virulence Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 9.213337132 8.511587913 8.226609439 9.301909639 9.072333632 8.911097755 9.079654371 9.021818934 8.539808178 8.756122906 8.64799864 89358622 Apc Organic Remediation Aromatics BTEX and related aromatics Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 9.12767465 9.020809824 8.818842827 9.072047876 8.645886228 8.420413285 8.854949602 8.878367012 8.832272819 8.469232333 8.613211794 8.619457091 134076311 phoA Stress Phosphate limitation Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 8.736943971 8.753412816 9.217808896 8.198035666 8.348310795 8.282414775 7.999759421 7.82778548 8.179091875 8.410809605 8.20308002 8.439064558 85060396 pstS Stress Phosphate limitation Sodalis glossinidius str. 'morsitans' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Sodalis;species:Sodalis glossinidius; 9.345893496 9.052710847 9.689730905 8.840545773 8.816684964 8.595229607 8.688259256 8.622145495 119820868 endochitinase Carbon cycling Carbon degradation Chitin Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 8.401158102 8.014586623 7.812705633 7.878856427 7.471414713 7.338185362 8.087271265 7.840986254 7.640907688 7.693300833 170774930 nahA Organic Remediation Aromatics Polycyclic aromatics Leptothrix cholodnii SP-6 10.07208059 10.00737545 10.10481741 9.155252277 9.166777868 9.29392707 9.680851968 9.217780216 9.375037528 9.398642478 9.411185692 9.400618076 151360998 cellobiase Carbon cycling Carbon degradation Cellulose Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 9.996500978 9.900957541 10.02500376 9.125703753 9.252767208 9.158043868 9.552323776 8.722261032 9.365541579 9.114139214 9.030367167 9.369832766 23009221 pstB Stress Phosphate limitation Magnetospirillum magnetotacticum MS-1 8.424738865 8.485045559 8.346268179 8.139217387 8.123675135 8.142421914 8.034882523 8.716793819 8.282249768 8.657414513 8.685297474 8.700670448 22129791 cda Carbon cycling Carbon degradation Starch Thermus sp. YBJ-1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus; 8.597962885 8.662616359 8.606419807 8.454043177 7.48876486 7.840760709 8.060502911 7.666713906 8.165370325 8.191136639 7.942857562 118171608 alkB Organic Remediation Other Hydrocarbons Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.998925953 9.232854331 8.832567507 8.426329477 8.391925275 8.870814483 9.095138856 8.840480229 8.688349868 8.764672868 8.848791246 8.626492814 118424398 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.101015511 7.858775283 8.059666145 7.884485175 8.02230233 8.065508137 8.069104988 8.090371841 8.09314826 7.774699069 8.221580041 8.171995579 162707953 Catechol Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 7.920670402 8.198192548 8.210271951 7.920197949 7.879001884 7.836455514 7.789173906 8.104306715 8.113913037 8.066575636 8.143016351 8.178833079 168702821 sigma_24 Stress Sigma factors Gemmata obscuriglobus UQM 2246 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata;species:Gemmata obscuriglobus; 9.659633219 9.891357243 9.232068523 9.854876034 8.974531121 9.730688809 9.24621811 8.921783555 68240050 sox Sulphur Sulphur oxidation Prosthecochloris aestuarii DSM 271 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Prosthecochloris;species:Prosthecochloris aestuarii; 8.485813045 8.679847471 8.708828636 8.015779149 7.952907059 7.891593569 7.675594607 7.59768416 8.223322324 7.50108186 7.704395724 8.067443041 148501154 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.65351074 8.52770328 8.79506031 7.819389403 7.374911384 8.007104993 7.566297513 7.286030985 7.821435035 7.756350479 7.875225803 123228610 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 8.791055463 8.773718634 8.956814256 8.510307803 8.502480735 8.372065009 8.295477213 8.079224964 8.08106631 8.079819911 8.568822285 156742657 sigma_24 Stress Sigma factors Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 9.843869325 9.575167203 9.573097159 9.627755033 9.722649664 9.551107867 9.495531965 10.25630786 9.288664433 9.667183542 9.425180696 9.831150089 117648178 narJ Stress Oxygen limitation Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 8.765434987 8.701175205 8.49692119 7.608797707 7.705854388 8.054049052 7.665257434 8.544867796 7.628559214 7.75439602 7.858401051 219550472 endochitinase Carbon cycling Carbon degradation Chitin Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 11.30569421 11.19160271 11.32337215 10.2233314 10.30115252 10.42672426 10.72085215 10.22643765 10.80884249 10.51458263 10.68712321 10.60095405 149908784 pulA Carbon cycling Carbon degradation Starch Moritella sp. PE36 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Moritellaceae;genus:Moritella; 8.243672812 8.294170389 7.593062412 7.450901877 7.632163975 7.975175721 7.487009725 7.543849056 7.726639491 7.654767576 119715884 bphF1 Organic Remediation Aromatics Polycyclic aromatics Nocardioides sp. JS614 8.833508664 8.611153835 8.849023193 8.101235035 7.98456366 8.083222862 8.564897734 8.052178336 8.16601038 8.033360756 8.095607572 118675186 PobA Organic Remediation Aromatics Aromatic carboxylic acid Dinoroseobacter shibae DFL 12 8.716628918 8.188384354 7.976637431 8.134789027 8.261234178 8.678289076 8.223597211 8.743702714 7.872311144 7.901476191 8.157660211 209498510 ureC Nitrogen Ammonification Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.685678135 7.575271506 7.897559457 8.207141332 7.833341931 8.058931429 7.878486243 7.95273903 8.127437699 153832840 MFS_antibiotic Antibiotic resistance transporter Vibrio harveyi HY01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 9.589394537 9.67529845 9.853059756 8.983979238 8.476133591 8.571092508 8.498540504 8.978752708 153954373 nifH Nitrogen Nitrogen fixation Clostridium kluyveri DSM 555 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium kluyveri; 8.65481199 8.72788139 8.815432529 8.090662269 7.785632783 7.670351489 7.082567093 7.479130856 7.977196356 7.797503536 7.834714756 7.976464952 159040159 mer Metal Resistance Mercury Salinispora arenicola CNS-205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 8.400413028 8.246823529 8.375444391 8.371888315 8.304085984 8.215638143 8.143752656 8.08885247 8.184317519 8.17531427 7.989424586 7.957688506 28809545 endochitinase Carbon cycling Carbon degradation Chitin Vibrio parahaemolyticus RIMD 2210633 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 8.341814146 8.127794131 8.743414817 7.813424055 7.553576906 7.793082468 7.188139324 7.894612138 7.324136807 7.439988564 7.768968724 84687091 chnB Organic Remediation Other Hydrocarbons Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 9.603217978 9.393910274 9.52416009 9.743791414 9.356375338 9.071014613 9.559635165 9.652380648 9.490454495 9.637688124 9.818535885 8.968414851 162429225 pulA Carbon cycling Carbon degradation Starch Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 9.301674926 9.107129993 8.985074564 8.942671573 8.840446342 8.656944033 8.618902711 9.003952401 8.982556328 9.024319486 8.958551977 9.064173938 256672487 ureC Nitrogen Ammonification Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.436234054 8.397801137 8.287163811 7.916582128 8.220550444 8.48640406 8.705266227 8.3307261 8.296080291 8.009503452 8.136531587 8.050124727 214044303 ureC Nitrogen Ammonification Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.144240163 8.275115972 8.228757543 7.689881506 8.102829285 7.59343791 7.822304286 8.152219862 7.873040233 113954784 CopA Metal Resistance Copper Synechococcus sp. CC9311 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 9.271093136 9.106361839 9.409256377 9.037002019 9.084889461 8.825187926 8.581790042 8.951819205 8.616108638 9.007785482 8.897255067 8.846835552 220719997 bphA Organic Remediation Aromatics Polycyclic aromatics Variovorax paradoxus S110 8.25932626 8.605813104 8.502389152 8.241510274 8.662899288 8.909511962 8.537258879 8.467527555 8.020281027 8.246703594 8.161942459 260437887 clpC Stress Protein stress Butyrivibrio crossotus DSM 2876 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Butyrivibrio;species:Butyrivibrio crossotus; 8.376726224 8.166193021 8.545804261 8.181394693 7.698784656 8.125211553 7.501558817 7.243677795 7.846711442 7.60227684 7.431760542 7.869522899 46203761 ChrA Metal Resistance Chromium Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 8.611051559 8.383013605 8.237940198 8.05402983 8.255534649 7.999358686 8.264425087 8.581590654 8.387063649 8.205587219 8.297386094 77462336 CadA Metal Resistance Cadmium Rhodobacter sphaeroides 2.4.1 9.212114284 9.180995113 9.148337566 8.669776382 8.51388262 8.425097755 8.454907478 8.324093252 8.521876319 8.463654427 8.313942531 8.600814735 108757336 bphA Organic Remediation Aromatics Polycyclic aromatics Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 8.929656916 9.016299857 9.093542619 8.460532205 8.490230927 8.301949456 8.245311185 8.266147911 8.41178511 8.32363436 8.125174931 8.632560678 227981634 iro virulence Tsukamurella paurometabola DSM 20162 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 8.579083353 8.527281961 8.59536846 8.550265575 8.49557654 8.377406028 8.598789707 8.337009714 8.546904597 8.555968694 8.36300206 74053703 cumA Organic Remediation Aromatics Other aromatics Arthrobacter sp. 3YC3 8.141024954 8.13910955 8.212411307 8.057422146 7.946495485 7.815280667 8.02352541 8.041031486 8.41096446 7.80934504 7.829024859 7.983123598 227848301 pstA Stress Phosphate limitation Halogeometricum borinquense DSM 11551 8.291847263 8.334713846 8.487124951 7.467647887 7.73997204 8.027682656 7.88127037 7.254322756 8.294998964 7.695830581 7.771376423 8.016728985 77378443 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.089931726 8.309564331 8.478887439 9.275322038 8.959888807 8.673188592 9.216866585 9.187640664 8.795193287 8.895850113 8.875223369 8.758471453 152966481 cellobiase Carbon cycling Carbon degradation Cellulose Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 8.277411283 8.554004658 8.097123409 7.671702889 7.60089765 7.972131901 7.98157141 7.648873885 8.306133294 7.665959865 7.642525937 170721474 proV Stress Osmotic stress Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.964330825 9.228050017 9.346930928 8.661355943 8.302023318 8.582092919 8.483594407 8.260369417 8.459278426 8.374808227 8.316914452 8.671577373 114767497 HBH Organic Remediation Aromatics BTEX and related aromatics Roseovarius sp. HTCC2601 8.430946284 8.026190516 7.861184516 7.935767669 7.867962497 7.730172324 8.278694891 7.959238326 7.805113004 8.146220824 116254346 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.132315088 8.307798539 7.93533465 8.088148336 7.864362683 7.487426095 7.886607988 7.914087606 7.563898395 7.886356984 7.779224323 117926830 pimF Organic Remediation Aromatics Aromatic carboxylic acid Magnetococcus sp. MC-1 superkingdom:Bacteria;phylum:Proteobacteria;genus:Magnetococcus; 8.658911173 8.40997673 8.396885829 7.853310018 7.761069723 7.931103701 7.566341913 7.545874004 8.069597084 7.833826715 7.680413525 7.8506474 170735912 nitA Organic Remediation Aromatics Other aromatics Burkholderia cenocepacia MC0-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 10.63482498 10.31385645 10.37426624 9.502858342 9.729653485 9.558840522 10.11949954 9.415612625 10.13599748 9.809253444 9.679593344 9.798338626 228748916 katE Stress Oxygen stress Bacillus mycoides DSM 2048 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus mycoides; 8.519143736 8.469562172 8.827051814 8.247985765 7.874996462 7.912919474 7.490264654 7.639649397 7.883936887 8.001591081 8.156068528 30525473 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.461910849 8.527067912 8.600942088 7.838665842 7.388172089 7.766760266 7.628825885 7.608223607 7.691225768 7.52233987 7.791851621 93354671 Arylest Organic Remediation Aromatics Other aromatics Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 10.26848568 10.06371735 10.40906638 9.430626411 9.562502076 9.702663174 10.06459258 9.31662613 10.39604065 9.826507895 9.802385486 9.805753739 124004655 alkB Organic Remediation Other Hydrocarbons Microscilla marina ATCC 23134 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Microscilla;species:Microscilla marina; 8.325412028 8.421530135 8.318421392 7.928783517 7.916812187 8.248251878 8.229215057 8.058929791 8.163841334 8.405920331 8.21676024 171683099 nagI Organic Remediation Aromatics Aromatic carboxylic acid Podospora anserina superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 8.437808061 8.466133638 8.483629078 7.808311782 7.680324341 7.765475808 7.951509497 7.795641742 8.172624876 7.952796011 7.774271447 7.874689287 209552397 nmoA Organic Remediation Aromatics Nitoaromatics Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.640627691 8.605083166 8.789879752 8.021437734 8.303299096 8.759571791 9.127488278 8.463573821 9.125628758 8.642152564 8.521767026 8.644155101 112462821 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.329213214 8.834720946 8.546325226 9.118410505 9.089810457 9.168244715 8.658061137 9.301922393 8.873674272 9.39348457 9.513920971 8.942525667 227455067 clpC Stress Protein stress Corynebacterium aurimucosum ATCC 700975 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium aurimucosum; 8.931150696 8.615303054 8.531903289 7.869773537 8.080879488 8.242064466 8.676728934 8.113784627 8.837214942 8.105188947 8.177096587 8.246062833 60100873 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.784906469 8.851257039 8.853571114 8.273593888 8.405583959 8.211200428 8.009736403 8.182865757 8.04672199 8.393513092 8.24747908 8.44593054 253700909 pstB Stress Phosphate limitation Geobacter sp. M21 9.625796401 9.50491262 9.463444532 9.073207771 8.704035251 8.919515816 8.906506175 8.678181513 9.053508946 8.821158919 9.055088243 9.058693581 83280994 gyrB other category gyrB Thermoplasma acidophilum superkingdom:Archaea;phylum:Euryarchaeota;class:Thermoplasmata;order:Thermoplasmatales;family:Thermoplasmataceae;genus:Thermoplasma; 9.021894918 8.902549239 9.048232497 8.381437401 8.145017391 8.170088558 7.908431373 7.949792203 8.38087812 8.085661519 7.79987878 8.335030171 196193350 CopA Metal Resistance Copper Alcanivorax sp. DG881 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 9.859151233 10.36044342 10.01495037 9.610116352 9.992084014 10.48870113 10.84120502 10.58276068 10.65348857 10.60178279 10.58080408 10.98563282 160915375 CopA Metal Resistance Copper Eubacterium dolichum DSM 3991 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichi;order:Erysipelotrichales;family:Erysipelotrichaceae;species:Eubacterium dolichum; 8.230361374 8.032485548 8.149755396 7.39614588 7.033087096 7.311228589 6.711936415 7.708954712 7.274347533 7.207001302 7.372980445 226358223 pstA Stress Phosphate limitation Deinococcus deserti VCD115 9.904283017 9.861819847 9.962858359 9.698979808 9.426469208 9.239077903 9.425130196 9.515553297 9.454072301 9.428342335 9.450751312 9.335463362 209958976 sigma_32 Stress Sigma factors Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 8.430455588 8.64866184 8.575369483 8.570860494 8.533210082 8.410578092 8.461769264 8.314446191 8.820899144 8.311856505 8.347194896 8.124191301 121998847 Arylest Organic Remediation Aromatics Other aromatics Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 8.788247638 8.785691621 9.087633183 8.391145813 8.489800786 8.313481938 8.319837331 8.350153058 8.446903629 8.377979332 8.285172145 8.603212232 94984887 fnr Stress Oxygen stress Deinococcus geothermalis DSM 11300 8.803715552 8.630427629 8.170060966 8.905956439 8.742853316 8.444659907 8.892210766 8.81266939 8.858809329 8.795971541 8.800686543 8.601754101 41078961 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.368687593 7.013989497 7.055917621 6.918302112 6.892552444 198251727 gyrB other category gyrB Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 9.229481262 9.296679636 8.553512881 8.233419253 8.167369904 8.3043399 8.847082671 8.307863276 8.369560782 8.741981302 226318447 pcc Carbon cycling Carbon fixation Deinococcus deserti VCD115 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 8.755723171 8.473487322 8.651381813 8.171497342 8.010584268 8.109019811 8.163111574 8.086621202 8.304198415 8.204927683 8.0568513 8.223089102 161729055 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 8.89234937 8.749922924 8.856125406 8.290484982 8.107408754 8.093842848 7.975467589 7.576764929 8.025722887 7.864176642 7.965643194 8.174011115 148836563 narI Stress Oxygen limitation Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 8.762239094 8.451045519 8.764546191 8.052937423 7.765312055 7.964597449 7.745768555 7.928654945 7.652551787 7.813145071 7.982558498 159038376 pimF Organic Remediation Aromatics Aromatic carboxylic acid Salinispora arenicola CNS-205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 8.160715631 8.103669 7.720670262 7.36249003 7.574444334 8.319675618 8.108798213 7.886971511 8.022498204 260599596 AceB Carbon cycling Carbon degradation others Cronobacter turicensis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter; 8.935660306 8.734242673 8.924805826 8.323675232 8.261796046 8.480861517 8.555205981 8.184523492 8.841283109 8.416262394 8.554839927 8.627694947 45386205 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 9.165532106 8.984998489 8.966982994 8.631935307 8.665252846 8.403781757 8.555186856 8.775005405 8.862358232 9.062878979 8.990416112 8.992128609 77380352 iro virulence Pseudomonas fluorescens Pf0-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.964164203 8.980060072 8.962749322 8.374671458 8.758498433 8.858291556 8.925699342 8.710912423 8.763533635 8.773113473 9.058138761 9.16420877 218525564 sigma_24 Stress Sigma factors Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 8.553015529 8.226076843 8.264513102 7.733813156 8.305647744 8.21098921 8.19262494 7.246596916 8.367798769 7.382525819 7.915107343 7.768424824 86137786 ureC Nitrogen Ammonification Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 9.025154597 9.069775047 8.921458147 8.639661419 8.760658429 8.329360448 8.230197403 8.666823586 8.394325914 8.782441591 8.848598669 238919516 SMR_antibiotics Antibiotic resistance transporter Edwardsiella ictaluri 93-146 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella ictaluri; 8.906138135 8.727333924 8.957982856 8.313431355 8.20194158 8.167034188 7.93676383 7.813641997 7.697503238 7.909320853 8.217432667 163856853 CopA Metal Resistance Copper Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 9.017595924 8.980604308 8.862453527 8.542914389 8.603197021 8.728623435 8.893544297 8.673758816 8.98250983 8.764014047 8.824987231 8.858948489 184194695 akbF Organic Remediation Aromatics BTEX and related aromatics Burkholderia phymatum STM815 8.600813681 8.42497403 8.839990278 7.918883866 7.970048467 7.927993019 7.778828663 7.978060339 8.075397185 7.915964634 7.825153514 8.286043364 253577304 pstB Stress Phosphate limitation Paenibacillus sp. oral taxon 786 str. D14 8.724065204 8.86421543 8.841977484 8.638947171 8.292136597 8.131260237 8.569572366 8.304786986 8.715679515 8.310262008 8.499667799 8.269380846 86282958 SMR_antibiotics Antibiotic resistance transporter Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.66539291 8.333507517 8.661972645 8.270380083 8.013830629 8.183697165 8.085803504 7.917519629 8.263966367 8.033478634 8.089388808 8.136440028 163796078 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 8.573770175 8.209588632 8.310591643 7.876045548 7.82485948 8.167214549 8.355516328 7.836881547 8.507854695 8.076143754 8.106878599 7.764585492 90104425 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.710471914 8.704727095 8.488976489 8.454017132 8.357393608 8.232665523 8.27851593 8.607443231 8.752725052 8.523153516 8.527677252 8.564134511 111153399 pstB Stress Phosphate limitation Frankia alni ACN14a 9.111681944 8.792851307 8.999122207 9.551087802 8.610833087 8.367075558 8.602768495 8.529783444 8.529470165 8.640462449 8.917750907 8.2250888 119816076 vanA Carbon cycling Carbon degradation Others Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.5979993 8.777282895 8.835518029 8.137635936 8.2605687 8.068906394 8.025216549 7.999310805 7.93931843 8.061733788 8.558477383 221176088 iro virulence Burkholderia multivorans CGD2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 8.558401946 8.658712029 8.4231203 8.549557694 8.818994751 8.885649297 9.089285957 9.203316476 8.711709426 9.249225145 9.138513788 9.175134596 242773510 MFS_antibiotic Antibiotic resistance transporter Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 8.449927867 8.746888117 8.535105035 8.233435903 8.233106801 7.968002899 8.091279705 8.517590599 8.446446595 8.631046309 8.329718971 8.392246089 114740587 NiR Nitrogen Assimilatory N reduction Hyphomonas neptunium ATCC 15444 8.544835039 8.332236072 8.272763244 7.960782928 7.833804544 7.807244948 7.855871798 7.881515725 7.734920021 7.530326792 7.963703615 116071891 sigma_70 Stress Sigma factors Synechococcus sp. BL107 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.832564481 8.534181025 8.976825374 8.769058065 8.65969981 8.660226707 57233757 rd Organic Remediation Chlorinated solvents Dehalococcoides ethenogenes 195 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides;species:Dehalococcoides ethenogenes; 8.717294875 8.611424428 8.580322851 7.664036971 7.625935112 7.783292429 8.056455654 7.562188215 7.732311578 8.009449314 7.840516301 87281145 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.222207996 8.338245905 8.446703204 7.87151421 7.559700765 7.855259092 7.281617689 7.597926985 7.618428208 7.744325049 7.718730674 50085096 TerZ Metal Resistance Tellurium Acinetobacter sp. ADP1 8.54460075 8.169546568 8.428426225 8.596898396 8.228665411 8.122098292 8.352594949 8.315506909 8.382312943 8.471811452 8.678745331 8.070411215 255334564 narH Stress Oxygen limitation Hyphomicrobium denitrificans ATCC 51888 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 7.604122732 7.753801422 7.868410018 7.824272225 7.870496733 8.315709184 7.701885436 7.965032655 7.560269867 85687794 nifH Nitrogen Nitrogen fixation Erythrobacter sp. NAP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 8.298855296 8.279393199 8.637361958 8.702819219 8.581922115 8.356044057 8.166438741 8.64466686 8.508564574 8.644750543 8.832416916 8.316739173 186970898 cap virulence capsule Elusimicrobium minutum Pei191 superkingdom:Bacteria;phylum:Elusimicrobia;class:Elusimicrobia;order:Elusimicrobiales;family:Elusimicrobiaceae;genus:Elusimicrobium;species:Elusimicrobium minutum; 8.241584403 8.243231113 8.413338825 7.650041111 7.515657981 7.890688775 8.01606755 7.73002455 7.978686465 7.978127961 8.126320366 8.151349407 170097926 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 8.812333936 8.920553805 9.158280676 8.099754852 7.937187216 7.661510505 7.568935029 7.584140493 7.849796663 8.110950348 8.09131209 8.292830779 186472917 sigma_24 Stress Sigma factors Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 10.08326273 10.17896126 10.12542065 9.373759154 8.914107583 9.31209685 9.578395571 9.265477309 9.330647087 9.28516225 9.349824561 9.45978872 213925066 pilin virulence pilin Pseudomonas syringae pv. tomato T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 9.633096854 9.228551052 9.475581203 9.36329292 9.433401743 9.207745259 9.304913111 9.533647877 9.333869617 9.435825503 9.549512753 9.453375068 86750693 PobA Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.121592988 8.895302848 8.911853392 8.897990081 8.615990225 8.515445172 8.698765353 8.668765429 8.737278352 8.695046303 8.844838196 8.690847853 126436609 proO Organic Remediation Aromatics Other aromatics Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 9.393272424 9.253527986 9.136928355 8.593186976 8.426406139 8.540870813 133912960 NiR Nitrogen Assimilatory N reduction Saccharopolyspora erythraea NRRL 2338 8.383784009 8.71372691 8.704364429 8.791299662 8.878973656 8.797641744 9.00828681 8.908405012 8.845566011 8.874740006 8.832808136 8.733981585 169812137 mer Metal Resistance Mercury Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 8.747221735 8.978442557 8.888027974 8.495123614 8.380476443 8.310231624 8.26911635 8.402817664 8.497810152 8.438428321 8.470314914 8.323690664 124901168 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia dolosa AUO158 9.405282647 9.252968086 9.18671968 9.073705113 8.946791374 8.840702429 9.204763125 9.432416862 9.309773192 9.596595209 9.396481383 9.374969574 54026965 aclB Carbon cycling Carbon fixation Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 7.850570185 7.780669148 7.609688614 7.598267659 7.671223684 8.095617715 7.394723871 7.518680294 7.608520221 126711128 nreB Metal Resistance Nickel Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 8.666161933 8.57750327 8.9091925 8.479691832 8.284165899 7.978274707 8.077475087 8.241732665 8.183208811 8.12458195 8.473034571 13476126 Mex Antibiotic resistance transporter Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 9.164102567 9.516708556 8.81158045 9.096980473 9.393345268 9.413487264 8.983996874 9.754606211 9.009557327 9.486760486 9.604390446 9.187449799 237748106 arcB Stress Oxygen limitation Oxalobacter formigenes OXCC13 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Oxalobacter;species:Oxalobacter formigenes; 9.841429713 9.874123858 9.793577314 9.381729725 9.262951819 9.040327074 9.168348987 9.350267796 9.094479712 9.248026852 9.1252578 9.284537939 256667770 fnr Stress Oxygen stress Streptomyces sp. AA4 8.55084212 8.290803738 8.308835431 8.083087275 8.045844182 7.754468495 7.806502152 7.651366234 8.117093932 7.826943442 7.852793501 7.756480284 163760003 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 8.72016063 9.001094452 9.020877887 7.967105313 8.036853456 8.492098288 8.353931254 8.056359514 8.409744149 8.19545941 7.94434539 8.281939421 116694915 pcpE Organic Remediation Herbicides related compound Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.69115991 8.566508177 8.838992189 8.651852564 8.530919807 8.329395625 8.369458647 8.944373286 8.564395429 8.83255953 8.816849098 8.993775417 218093478 amyA Carbon cycling Carbon degradation Starch Thermococcus kodakarensis KOD1 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus kodakarensis; 8.938109694 8.956520502 8.499246178 8.336558947 8.190344199 8.023916904 7.800689723 8.176581558 8.239594103 8.006090875 8.412346504 8.463893097 34499923 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.613036239 8.477274766 8.588620944 8.153489222 8.083330071 8.102333358 8.180084144 8.130487594 8.149111632 8.096805777 8.037219672 8.215970081 218778505 SMR_antibiotics Antibiotic resistance transporter Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 8.17897469 7.951487585 7.408966188 7.286551596 7.202983198 6.846249586 7.143619466 7.833033353 7.085514053 7.180097571 7.330980418 167350935 pstC Stress Phosphate limitation Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 9.039006866 8.691062326 8.59305127 8.618148846 8.527371401 8.385643765 8.147709426 8.453641652 8.440136645 8.369560472 8.099890975 8.310474374 8777461 cda Carbon cycling Carbon degradation Starch Thermoactinomyces vulgaris superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Thermoactinomycetaceae;genus:Thermoactinomyces; 8.200586562 8.159162023 8.247006233 8.071555853 8.027245891 7.615864472 7.69876098 7.967853399 8.206365921 7.937709683 7.919195714 258622984 hly virulence hemolysin Vibrio mimicus VM573 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 8.438739373 8.30420295 8.716096485 8.134049246 8.179121988 8.296111471 8.383613915 8.796587933 8.336018977 8.769790945 8.380912158 8.454808187 99083367 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.753431587 8.669702858 8.788372424 8.18852631 8.092490199 8.069062924 7.891780909 7.89290058 8.194172395 8.040918195 7.936251104 8.216441695 77920682 cydB Stress Oxygen limitation Pelobacter carbinolicus DSM 2380 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter carbinolicus; 8.517037547 8.127484915 8.608710932 8.578252786 8.588833843 8.476175202 8.211547175 8.843868341 8.446710249 8.501635969 8.235842142 8.37190258 58532930 T4_recomb_endonuclease Bacteria phage REPLICATION Synechococcus phage S-PM2 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 9.131714325 9.209738333 9.366953989 8.672268731 8.388137268 8.349499867 8.222498213 8.174812893 8.524153781 8.233537428 8.068685597 8.654887975 153196923 nmoA Organic Remediation Aromatics Nitoaromatics Listeria monocytogenes 10403S superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria monocytogenes; 8.324474283 8.388476916 8.324330948 8.035097153 7.530410289 7.974924121 7.929777245 8.195051455 7.997631359 7.854655616 7.566176651 14994650 amoA Nitrogen Nitrification superkingdom:Bacteria; 8.878274289 8.687347521 8.896046204 8.272397232 7.855733781 8.123861254 7.961989684 7.703198089 7.945786727 7.841709207 8.179376338 78222760 silP Metal Resistance Silver Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 8.993561353 8.917715058 9.067025496 8.401396131 8.347509161 8.245824663 8.190361076 8.052715111 8.158396478 8.156708014 7.996363945 8.452499383 57225094 sigma_70 Stress Sigma factors Dehalococcoides ethenogenes 195 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides;species:Dehalococcoides ethenogenes; 7.192653472 7.590389971 7.497070481 7.634527105 116619212 glnA Stress Nitrogen limitation Solibacter usitatus Ellin6076 8.793855427 8.475715304 8.611177046 8.371964873 8.012401414 8.499019846 8.835102565 8.452525081 8.658653022 8.187578564 8.075125559 8.269997549 114308822 pilin virulence pilin Nitrosomonas eutropha C91 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas eutropha; 9.632990799 9.743169698 9.696909502 9.144895203 9.14685787 9.126147107 9.032975989 9.294180051 8.949141672 9.25490005 9.367741411 9.405666756 119384579 CopA Metal Resistance Copper Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 9.55436095 9.537002649 9.416535473 8.890939268 8.53371778 8.870319361 8.969788256 8.722803748 8.849008221 8.662286337 8.749704216 9.092467505 151302323 APS_AprA Sulphur adenylylsulfate reductase Desulfarculus baarsii 8.646805656 8.769049753 8.441226634 8.005544889 7.996061553 8.57749972 8.83408875 8.057065351 8.686403735 8.481009969 8.765606827 8.3408883 222084953 ppx Phosphorus Phosphorus utilization Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 9.825528929 9.518144914 9.465610184 9.569490158 8.911718359 9.261650232 9.579797079 9.474134181 9.259861869 9.343318785 8.952391044 126657055 clpC Stress Protein stress Cyanothece sp. CCY0110 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.478396074 8.423958414 8.879330616 7.969534084 7.79063016 7.774336989 7.620235399 7.430861812 8.267204466 7.479644725 7.480644863 7.96845739 197123496 AceA Carbon cycling Carbon degradation others Anaeromyxobacter sp. K superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 10.62558683 10.74199934 10.72506695 10.48842897 9.743876223 10.38180343 10.7747067 10.421327 10.94775782 10.64581817 10.72386851 10.50095 78093550 narG Nitrogen Denitrification uncultured bacterium 8.726636339 8.840962625 7.753023433 7.910804766 8.17752018 8.826029846 7.959613398 8.951111489 7.946018771 7.754811066 8.106598283 89358304 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 7.603089557 8.018748319 8.025278808 7.253749418 7.751604765 7.781520093 8.111029151 7.486042478 84668568 4HBH Organic Remediation Aromatics BTEX and related aromatics Rhodobacterales bacterium HTCC2654 8.256010083 8.362139491 8.492335341 8.107351734 8.237058972 8.135047504 7.926529742 8.35345429 8.266802177 8.599507894 8.508233254 8.429364028 125974113 pstC Stress Phosphate limitation Clostridium thermocellum ATCC 27405 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 9.131265807 8.752329207 9.260823654 8.379939871 8.12656268 8.131329292 7.790990123 7.750948763 8.21971773 8.167965297 8.048298954 8.350873964 148547940 oxdB Organic Remediation Aromatics Nitoaromatics Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.924326904 8.77467487 8.769385051 8.459494404 8.64021707 8.433906811 8.462481093 8.78726928 8.59673448 8.74344668 8.552203729 214045757 alkK Organic Remediation Others Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.583696377 9.155163857 9.022994333 8.69673799 8.834535355 8.544865688 8.790493604 8.461196012 8.515771516 8.694477677 8.63232186 8.479858239 218277199 ppk Phosphorus Phosphorus utilization Roseburia intestinalis L1-82 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia intestinalis; 8.466506349 8.373245645 8.464765139 7.393425307 7.570575097 7.368035074 7.439299385 7.375530865 7.696637455 7.417066193 7.552794348 124266896 narI Stress Oxygen limitation Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 9.934858907 9.548605246 9.442546813 9.092297036 9.442297091 9.413046691 9.682032377 8.586939825 9.981349908 9.307539464 9.382468522 9.335454367 10581663 atzA Organic Remediation Herbicides related compound Halobacterium sp. NRC-1 8.212671574 8.573826133 8.009135739 7.910531451 8.243679879 8.289886332 8.080806451 8.290408685 8.296643041 8.199496978 8.348565356 86607536 NiR Nitrogen Assimilatory N reduction Synechococcus sp. JA-2-3B'a(2-13) 8.327332719 8.066841315 8.358650186 8.113234619 7.812110236 7.84044848 8.063923505 8.296672476 8.068530276 8.259953166 8.250127518 8.184186514 83589488 sigma_70 Stress Sigma factors Moorella thermoacetica ATCC 39073 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Moorella;species:Moorella thermoacetica; 8.268672883 8.426839429 8.445090881 7.821370155 7.618419056 7.799376848 7.736885093 7.454255727 7.981212264 7.714460807 7.927034635 8.003466542 119776118 cytochrome Energy process Energy process Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 9.032892316 8.739460741 9.110458178 8.659165069 8.631227529 8.331481797 8.67698143 8.744762839 8.755793082 8.889285289 8.584337273 9.030592485 148255077 sox Sulphur Sulphur oxidation Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.608791952 8.649224513 8.7182848 8.542999377 8.555427609 8.19558714 8.444595627 8.741356424 8.658792176 8.475860197 8.44121302 8.299357543 189425973 CopA Metal Resistance Copper Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 8.31841499 8.234081143 8.524896043 7.720966203 7.752137947 7.804404 7.595978785 7.590823203 7.905885028 7.364967637 7.543781941 7.837996915 113933102 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.438038854 8.78870893 8.770775167 8.063863003 8.10815267 8.316469528 8.213538529 7.924683303 8.184632049 8.190242129 8.312791071 76058257 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.974600792 8.382495763 7.769135231 8.213805868 8.249272192 8.260972668 8.544440209 8.347837137 8.764053144 8.481967893 8.35024148 83650431 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Burkholderia thailandensis E264 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 9.203555866 9.070536842 9.050620998 8.640150041 8.391095214 8.457136709 8.347888798 8.483247189 8.25625755 8.483977795 8.411854598 8.644750026 218779888 sigma_24 Stress Sigma factors Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 9.063491192 9.092889371 9.164608834 8.591095365 8.411986318 8.245696467 8.46189716 8.815729192 8.558724952 8.740444895 8.557632745 8.867302844 229815010 ppk Phosphorus Phosphorus utilization Collinsella intestinalis DSM 13280 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella intestinalis; 8.38210896 8.429977621 8.685957306 8.227684133 8.109472125 7.989974268 7.792784418 7.891754358 8.165322303 8.116692978 7.834494564 8.244497857 218511362 B_lactamase_A Antibiotic resistance Beta-lactamases uncultured bacterium superkingdom:Bacteria; 9.259733193 8.970300558 9.203284817 9.253870614 9.215434694 8.971392093 9.139630014 9.510757745 9.240824583 9.230863505 9.168506655 9.337789054 209546583 sigma_24 Stress Sigma factors Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.244229859 7.347019413 7.107238391 7.522780961 7.341914945 7.387346235 7.473649862 7.71603352 23014994 ArsC Metal Resistance Arsenic Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 8.578667628 8.533775732 8.357663706 8.293373328 8.473908335 8.712862994 8.906211222 8.540893032 8.365814891 8.241291736 8.212150938 8.216988256 88854532 glnA Stress Nitrogen limitation marine actinobacterium PHSC20C1 8.923312191 9.014715323 9.076472739 8.486386757 8.135629097 8.379180304 8.228448742 8.298081712 8.310384829 8.436900889 8.455617814 8.719406229 148251805 hrcA Stress Heat shock Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.837350999 7.94747334 8.057948479 7.747981024 8.481952622 7.959970658 8.110821548 8.037100992 8.173518608 91693619 bphA Organic Remediation Aromatics Polycyclic aromatics Burkholderia xenovorans LB400 8.492552439 8.425532024 8.674921496 7.975082626 7.704690947 8.18331776 8.36348092 7.993683178 8.667522429 7.916110418 7.83764223 8.357221685 118436560 sigma_70 Stress Sigma factors Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 8.584471797 8.490979608 8.113788219 7.971890611 7.961705395 8.478559084 7.690897277 8.412758162 8.155901233 8.151588181 8.257998104 187922907 fnr Stress Oxygen stress Burkholderia phytofirmans PsJN 8.637993248 8.758032964 9.008447845 8.060830576 8.055964366 8.114965278 8.101861178 8.110469171 8.194080914 7.767594195 7.926303629 8.222249462 87306388 ahpC Stress Oxygen stress Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 8.303920482 8.419557951 8.177561793 7.742328457 7.799910091 7.612344929 7.462361004 7.486684172 7.660794381 7.688982914 7.672509844 72121717 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 9.625110872 10.25214311 10.13670025 10.25830087 10.29092295 10.17004369 10.24906183 10.59409694 9.992857675 10.47293828 10.17531211 10.12415411 209500984 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.864550688 8.551089377 8.793684788 8.704102554 8.658187955 8.58601312 8.694615325 8.66111649 8.882471399 8.750658798 8.672742522 8.454667066 113729424 chnB Organic Remediation Other Hydrocarbons Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 9.003495149 8.495823124 8.923894433 8.229367145 8.743677376 8.754517627 8.970175282 8.004653723 9.0457239 8.343036661 8.278012637 8.584799688 91203082 phoB Stress Phosphate limitation Candidatus Kuenenia stuttgartiensis superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;genus:Candidatus Kuenenia; 8.831509859 8.89159715 8.697127647 8.173408014 7.657567584 8.661202318 8.716705534 8.42236671 8.923520759 8.974240765 8.918178684 220911835 atzC Organic Remediation Herbicides related compound Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 8.603851899 8.612346346 8.242315196 8.689419435 8.831914694 8.558322039 8.444785934 8.820785105 8.533981869 8.725432165 8.754816267 8.403256591 117609203 dsrB Sulphur sulfite reductase Magnetococcus sp. MC-1 9.541114471 8.403797727 8.327647194 9.48281113 9.574265737 8.505599273 9.682064495 9.625841987 9.663321049 87135972 pstC Stress Phosphate limitation Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 8.64784544 8.555501397 8.721672632 8.539366063 8.454393478 8.57387037 8.618005003 8.654784105 8.826719797 8.666578519 8.649944959 8.625566079 270511678 obgE Stress Radiation stress Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 9.03849602 9.113395477 8.869554128 7.999614472 8.337418725 8.310690026 8.282897456 7.647138228 7.995690438 7.951297949 8.080874783 119669827 bphA Organic Remediation Aromatics Polycyclic aromatics Azoarcus sp. BH72 9.806547971 9.895230913 10.16251254 9.814080917 9.806321129 9.576979854 9.958135937 10.40888881 10.1600344 10.27585482 9.958457716 10.31560078 115423050 mer Metal Resistance Mercury Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 8.323343929 8.229623193 8.30360953 7.937872004 7.850333862 7.763880309 7.416581307 7.649438927 7.723071426 7.96535877 118762413 tftH Organic Remediation Aromatics Chlorinated aromatics Sphingomonas wittichii RW1 8.236035668 8.515940574 8.337025699 8.615848462 8.812067076 8.736139755 8.695408327 9.350264991 8.606455795 9.025230304 8.636478143 8.89839786 2576391 AprA Sulphur adenylylsulfate reductase Allochromatium vinosum 8.582343546 8.508450692 8.413723147 8.134566585 8.199320893 8.089159314 7.831637703 8.334012535 8.167969872 8.097068286 8.036439002 8.309092306 229820013 ara Carbon cycling Carbon degradation Hemicellulose Beutenbergia cavernae DSM 12333 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Beutenbergiaceae;genus:Beutenbergia;species:Beutenbergia cavernae; 9.098162362 9.385005307 9.120426733 8.698646801 8.882196891 9.493019704 9.801588529 9.381891936 9.562047826 9.006572368 9.206866549 9.230486472 118172732 ArsC Metal Resistance Arsenic Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.31618756 8.205933499 8.147704365 8.664265257 8.373227547 8.218732466 8.236566441 8.281154863 8.387971855 8.263322176 8.001993472 7.799696142 222102216 nmoA Organic Remediation Aromatics Nitoaromatics Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 9.672497693 9.497255097 9.366777632 9.702811743 9.35551272 9.086916911 9.646105261 9.603103779 9.472091775 9.494007746 9.521908404 9.302502677 91974621 ChrA Metal Resistance Chromium Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.593568956 8.819011599 8.599909777 8.448233613 8.101016042 8.132592664 8.506904176 8.511766152 8.723222263 8.385607872 8.204875862 8.225619765 119539142 pstC Stress Phosphate limitation Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.765582812 8.87685715 8.572345031 8.843002027 8.588267658 8.412517538 8.856987133 8.670840499 8.781894514 8.574846343 8.53747901 8.515027679 119497641 oxdB Organic Remediation Aromatics Nitoaromatics Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 9.751184124 9.705761795 9.799265338 9.169572415 9.081166682 8.820651604 9.50972558 9.303721519 9.538804097 9.490870796 9.639412119 9.375002401 190150019 ppx Phosphorus Phosphorus utilization Actinobacillus pleuropneumoniae serovar 7 str. AP76 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus pleuropneumoniae; 8.590279131 8.677081581 8.924295319 8.226346063 8.141917685 8.212860464 7.871813817 7.963258988 8.222145417 7.854543442 7.913773716 8.301749725 51855848 Arylest Organic Remediation Aromatics Other aromatics Symbiobacterium thermophilum IAM 14863 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVIII. Incertae Sedis;genus:Symbiobacterium;species:Symbiobacterium thermophilum; 9.809386418 9.765846518 9.83154984 9.092775379 9.0001264 8.975246331 8.95430916 8.847867749 8.723936577 8.993824072 9.047230432 9.347714221 114226548 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Alkalilimnicola ehrlichei MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 8.633209821 8.821152715 8.911575381 8.511205802 8.243862611 8.143985429 7.844790104 7.706597357 8.279511169 8.088658017 7.867500477 8.245026432 110635485 sigma_32 Stress Sigma factors Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 8.574896159 8.53354976 8.488908598 8.68270548 8.546567255 8.406831482 8.689192662 8.595976473 8.638543822 8.569288432 8.511417665 8.477399295 149184839 pstA Stress Phosphate limitation Erythrobacter sp. SD-21 8.462403052 8.328232523 8.599385619 8.707831113 8.83707781 8.769262996 8.382922156 8.944729015 8.108287712 8.799804871 8.808070398 8.681432139 257478266 glnA Stress Nitrogen limitation Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 8.829963386 8.894232904 9.024530294 8.389199354 8.208265305 8.14739524 8.143198883 7.936435843 8.193919808 7.944388797 8.116413562 148510903 CopA Metal Resistance Copper Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.905174444 8.948379487 8.677187638 8.519831243 8.194909383 7.986277341 7.850438215 8.612663702 117164748 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Streptomyces ambofaciens ATCC 23877 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ambofaciens; 8.612161537 8.812940128 8.722075988 8.315170865 8.528631415 8.65799989 8.805864485 8.260225461 9.034559355 8.428257515 8.429363953 8.398453866 110551987 nifH Nitrogen Nitrogen fixation Methanoculleus marisnigri JR1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanoculleus;species:Methanoculleus marisnigri; 9.294068595 8.51610292 8.42577226 9.637219803 9.212974177 9.284566474 9.52264993 9.493935678 8.645515557 9.075407763 9.065143896 94497924 Arylest Organic Remediation Aromatics Other aromatics Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 9.027181193 8.874931353 8.717616673 8.95041359 8.923271978 8.644404028 8.85492255 9.130809025 8.967489948 9.30993659 9.179072121 9.16489922 15789823 pcc Carbon cycling Carbon fixation Halobacterium sp. NRC-1 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halobacterium;species:Halobacterium salinarum; 8.320474052 8.501227016 8.496045328 7.577290353 8.114444215 8.205553871 8.500713508 7.535415336 8.217818606 7.897304287 7.849458098 7.65866713 159901895 catB Organic Remediation Aromatics BTEX and related aromatics uncultured planctomycete 3FN superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales; 9.737277826 9.671824868 9.467866818 9.391865739 9.066366704 8.912640808 9.129987234 9.039457029 9.046762839 9.255852228 9.323710413 8.621376036 170027547 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 8.096828973 8.114410402 8.23346933 7.925930775 7.889453748 7.738973677 7.583881147 7.661137272 8.112514361 7.423374777 7.703181047 7.770820727 159180110 pcaG Organic Remediation Aromatics Other aromatics alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 9.466138401 9.435876721 9.276218549 9.069550711 9.101012411 9.098602181 9.467099361 9.118782721 9.156697766 9.134812386 9.371661616 9.386430256 162453168 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 10.18719735 9.781587897 9.915579287 9.84116551 9.710955652 9.90487817 9.429149351 10.01450912 9.531215183 9.901061405 10.11576126 9.543675156 223937956 sigma_70 Stress Sigma factors bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 8.277090131 8.115390394 7.648935845 8.002314988 8.272737354 8.294161997 7.748856465 8.38174585 7.868480101 8.137979535 8.328116249 209515862 CadA Metal Resistance Cadmium Burkholderia sp. H160 8.940162629 8.696462002 9.199547644 8.728751005 8.43879011 8.525013587 8.550680154 8.544883698 8.228817847 8.466123831 8.447694986 8.574337552 71735530 vanA Carbon cycling Carbon degradation Others Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 9.051495183 8.958625834 8.974749793 9.053604566 9.14499075 9.093469872 8.709249415 9.325542738 8.723660215 9.157799226 9.259642775 9.201619112 255922313 fnr Stress Oxygen stress Actinosynnema mirum DSM 43827 9.967892354 9.847683252 9.983373594 9.268521256 9.261979094 9.168797636 9.314832797 8.997521076 9.125174391 9.108056517 9.1733445 9.379043834 88854374 mer Metal Resistance Mercury marine actinobacterium PHSC20C1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 8.868109066 8.978451085 8.29361161 8.738601692 7.83799558 8.271218393 8.452113485 8.160264674 7.727830152 7.87252898 8.040927146 169761939 fnr Stress Oxygen stress Pseudomonas putida W619 8.691736973 8.518400023 8.664254024 8.650004345 8.3784223 8.202108985 8.103405884 8.704359455 8.337753931 8.546053008 8.246706511 8.192874196 198260894 ahpF Stress Oxygen stress Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 9.035063234 8.254839766 8.529029671 9.310390223 9.176173179 9.291809534 149202579 pstB Stress Phosphate limitation Roseovarius sp. TM1035 8.161346926 8.216402815 8.359345961 7.430156029 7.283660467 7.524612595 7.804585 7.235246938 8.038870892 7.491571042 7.465555163 7.547412188 167630246 atzA Organic Remediation Herbicides related compound Heliobacterium modesticaldum Ice1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Heliobacteriaceae;genus:Heliobacterium;species:Heliobacterium modesticaldum; 8.77616923 8.705578126 8.919804929 8.01803113 8.389516702 7.950572372 7.824333618 7.784978655 8.090179219 7.992304824 7.665766131 8.258471862 40886730 bphA Organic Remediation Aromatics Polycyclic aromatics Pseudomonas rhodesiae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.435171852 8.145704579 8.073644207 8.08937046 8.063236978 8.049511313 8.380835549 8.004220865 8.330811947 8.393129196 8.218223809 146409525 ChrA Metal Resistance Chromium Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.573688087 8.637126202 9.040323943 8.933686285 8.758933863 8.336873837 8.73989302 8.979316786 8.768852367 8.794128826 8.363218814 8.674557748 37521724 ahpC Stress Oxygen stress Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 8.615090367 8.374064593 8.75294209 8.539838807 8.272668456 8.546819013 8.484081724 8.65852433 72160952 sigma_24 Stress Sigma factors Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 9.452206975 9.541398829 9.619356228 8.424508791 8.912761764 9.044665422 9.094754727 9.196382162 8.831751004 8.563380299 157374237 phoA Stress Phosphate limitation Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 8.002252152 7.931250763 8.303047622 7.533530848 7.848999965 7.589049442 7.331170157 7.539299224 7.305885144 7.475130384 7.72425497 168703379 sigma_24 Stress Sigma factors Gemmata obscuriglobus UQM 2246 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata;species:Gemmata obscuriglobus; 10.37633379 10.12312356 9.76971278 9.609227948 9.560040081 10.05259333 10.02526037 94983855 gyrB other category gyrB Entomoplasma freundtii superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Entomoplasmatales;family:Entomoplasmataceae;genus:Entomoplasma; 8.467651075 8.376859669 8.663455688 7.732789636 8.432080567 7.97465476 8.239110208 8.5182165 7.993631052 184196735 Catechol Organic Remediation Aromatics Other aromatics Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.881515543 8.828291553 8.732220339 8.675629327 8.683859214 8.467495551 8.561952224 8.883452361 8.477249469 8.76181576 8.791804746 8.723003925 242133452 pstB Stress Phosphate limitation Dickeya dadantii Ech703 8.426331056 8.702484087 8.37309848 7.779592091 7.687956938 7.881098627 7.457244595 7.601835892 8.049558552 7.5200688 7.449694056 7.875142353 229379468 arcB Stress Oxygen limitation Oxalobacter formigenes OXCC13 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Oxalobacter;species:Oxalobacter formigenes; 8.1218888 8.254811825 7.986612583 7.392276838 7.526530075 7.276584279 7.617523 8.005206204 7.353730715 7.267325096 219992563 ChrA Metal Resistance Chromium Halothermothrix orenii H 168 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Halanaerobiales;family:Halanaerobiaceae;genus:Halothermothrix;species:Halothermothrix orenii; 9.164491153 8.902530836 9.217473132 8.521327304 8.363142809 8.416872101 8.254597975 8.15152854 8.397141527 8.376951727 8.245939182 8.721910486 145300269 arcB Stress Oxygen limitation Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 8.747246821 8.536978165 8.779494544 8.29034408 8.336483089 8.237857311 8.120247196 8.519827712 8.26032929 8.337308175 8.353175003 8.29949171 218887167 ahpF Stress Oxygen stress Desulfovibrio vulgaris str. 'Miyazaki F' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 9.047860716 8.46970389 8.526564603 8.819671857 8.900678688 8.720567252 8.529429643 9.229125805 8.342664923 8.969170696 8.846621403 9.059453021 183219094 TerC Metal Resistance Tellurium Bifidobacterium animalis subsp. lactis HN019 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 8.39871671 8.457090889 7.442557009 7.776856086 8.015823498 8.261681824 7.779770348 8.741907706 7.797449691 7.842067702 8.109084547 216824 nifH Nitrogen Nitrogen fixation Leptolyngbya boryana superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Leptolyngbya; 8.470112942 8.405171113 8.500708165 7.831897235 7.83682316 7.835732151 7.997025751 7.99211434 8.216390627 8.04864896 7.869021046 8.004047548 150274396 ChrA Metal Resistance Chromium Bacteroides capillosus ATCC 29799 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides capillosus; 8.756823492 8.269782498 8.412359039 8.61383864 8.1772737 7.925387202 8.488862806 8.441721874 8.463502232 8.257453691 8.340509889 8.275466411 257797127 ahpF Stress Oxygen stress Desulfohalobium retbaense DSM 5692 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium;species:Desulfohalobium retbaense; 8.844587749 8.857622629 9.047757041 8.281186514 8.106867014 8.184343427 8.229773767 7.962652316 7.910823164 7.908638123 8.248249347 118028999 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.831088847 8.7501424 8.974817655 8.345789336 8.402179523 8.42553124 8.432038866 8.204482848 8.540831448 8.496051426 8.398468292 8.631966636 151563429 MFS_antibiotic Antibiotic resistance transporter Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 10.40333965 10.69907249 10.20308548 9.780918148 9.704449313 10.34157418 10.66793637 10.15387317 10.29828538 9.981605199 10.23295753 10.00311199 118037660 ALN Organic Remediation Others Burkholderia phytofirmans PsJN 8.419459478 8.484989751 8.692754228 8.474557176 8.033325355 8.61906259 8.663827806 8.384365211 8.542077051 8.663986334 8.067316088 147886218 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 8.544339523 8.516312576 8.626461468 8.391909518 8.263940616 7.914985811 8.082584228 8.173466688 8.454193665 8.329412737 8.435960339 8.002643705 187711185 catechol_B Organic Remediation Aromatics Other aromatics Sphingomonas sp. B2-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 9.043597513 9.004947613 9.157815631 8.839631351 8.657056514 8.435443552 8.576042209 8.803715774 8.822786058 8.664528292 8.678968719 8.787712242 119391609 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.603207341 8.170703344 8.082336492 8.839133246 8.60742954 8.467300483 8.892540008 8.655440655 8.623189096 8.649376765 8.594762117 150389759 tutFDG Organic Remediation Aromatics BTEX and related aromatics Alkaliphilus metalliredigens QYMF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus metalliredigens; 7.937234626 8.009300998 7.449441943 7.813772129 7.230452807 7.519565323 7.914232691 7.721651026 7.825477995 7.585835736 190013127 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Stenotrophomonas maltophilia K279a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 8.834578414 9.052253931 8.878899791 8.574493078 8.415472843 8.299940796 8.166141159 8.269711059 8.172316214 8.147266514 8.199900483 8.406707417 84511543 pstC Stress Phosphate limitation Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 8.189329567 8.495588411 8.717137216 8.012407311 7.315240102 7.929820428 7.339540869 7.14003791 7.861831927 7.802770228 8.003486118 7.918450809 41410234 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 8.605920444 8.702472876 8.210025229 7.959813085 8.016795097 8.105904261 7.593288875 7.669748642 8.118620926 8.073180031 8.038046446 7.871574846 114225875 fnr Stress Oxygen stress Alkalilimnicola ehrlichii MLHE-1 8.181948904 8.200773341 8.072066315 7.791841178 8.098683287 7.79261235 8.04134314 8.147497676 68343000 pcaG Organic Remediation Aromatics Other aromatics Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.634888721 8.393213295 7.762083091 7.807502605 8.14385479 8.461177282 7.530696606 8.47425265 7.938315683 7.544150015 8.056038531 77460581 Catechol Organic Remediation Aromatics Other aromatics Pseudomonas fluorescens Pf0-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.48323518 8.246752665 8.214657761 8.277867877 8.106551221 7.905846243 8.1618987 8.555048832 8.214746635 8.355875629 7.958046818 8.295051013 38199758 pulA Carbon cycling Carbon degradation Starch Corynebacterium diphtheriae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium; 7.917425068 8.147943069 7.2043849 7.53993791 7.862447635 7.532793011 7.437191897 7.995022929 7.139031879 7.39793669 27352080 catechol_B Organic Remediation Aromatics Other aromatics Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.953130602 9.231796788 8.812778153 8.915069342 9.158353206 9.124207229 8.987327537 9.50359082 9.113074654 9.22925979 9.249292597 9.008251262 119387847 nmoA Organic Remediation Aromatics Nitoaromatics Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 9.205600709 9.226974075 9.340766429 8.901266748 8.757990941 8.546505226 8.61739083 8.708473921 8.754459946 8.761551723 8.729622396 9.082441178 158312905 amyA Carbon cycling Carbon degradation Starch Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.465908138 8.390595748 8.579269021 8.084395982 8.096970214 7.946356668 7.662498086 7.522183036 8.40384021 7.692623548 7.632367297 8.048326686 157404654 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 8.815327074 8.566192999 8.439944143 7.799623326 7.825924497 8.184956697 8.476830483 8.108980053 8.416642354 7.881203994 7.977337353 7.7883255 218268366 tutFDG Organic Remediation Aromatics BTEX and related aromatics Clostridium hylemonae DSM 15053 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 8.952584137 9.090062461 9.186419776 8.274733023 7.222538143 8.381860926 8.992473525 8.666175938 8.249884328 8.713941272 8.915806465 8.889616876 209960456 silC Metal Resistance Silver Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 8.372774991 8.298627749 7.534013549 7.663046697 7.974416001 8.173393791 7.788639868 8.044010979 7.942744061 7.986459011 8.074108925 146338039 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.264564613 8.447574532 8.440995202 7.30917816 8.060999313 8.101418801 7.591805508 7.576369122 7.845060926 171915738 type_III_secretion virulence secretion Verrucomicrobium spinosum DSM 4136 9.481809178 9.324064593 9.426447282 8.728056026 8.631158374 8.531252073 8.670476791 8.277986976 8.429938606 8.398032185 8.683105501 93358272 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.534726825 8.437132622 8.348946249 8.950916717 8.187857524 8.074084266 8.791198329 8.259019879 8.76440866 8.164882423 91790708 ChrA Metal Resistance Chromium Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 9.502321814 9.395091436 9.591302793 8.517851223 8.958260745 9.276366688 9.061633114 9.296799315 9.336182802 9.362552819 9.511863079 8.998806179 257870018 glnR Stress Nitrogen limitation Enterococcus gallinarum EG2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus gallinarum; 8.289629212 8.240543921 8.241913306 7.55582389 7.995060731 7.946456474 7.592946012 8.408139513 7.585636608 7.867815767 7.651332373 124497789 gyrB other category gyrB Bacillus coagulans 36D1 10.08853908 10.15542709 9.729909131 9.547952917 9.513605838 9.421066207 9.729755947 56965380 alkK Organic Remediation Others Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 8.134308618 8.090877633 7.97996878 7.952175744 7.607162853 7.261596652 7.967962239 7.892884155 7.675570377 7.714725886 7.848239361 23492566 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 8.398743405 8.37559151 7.903476548 8.219702263 7.826411728 8.213416179 8.541603469 8.413538403 8.563643416 8.400135524 70672991 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.974818062 8.12392697 8.2267749 7.372750715 7.241268963 7.336832243 6.825189561 6.950421596 7.405790643 7.187743647 7.124801013 7.225121659 148260103 cytochrome_c Bioleaching Electron transport Acidiphilium cryptum JF-5 8.034432164 8.161758624 8.220623718 7.897043262 7.497674804 7.728103031 7.134304352 6.595560527 7.995748533 7.033653692 7.345197008 7.618188091 170140070 phtA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 9.670593492 9.61560495 9.58304016 8.869709432 8.762284868 8.93007226 8.9894844 8.559361839 9.061041063 8.6420474 8.717068575 9.005044972 112463953 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.247350739 8.165415301 8.076303514 7.505210324 7.77226635 7.610143191 7.877303036 7.247481892 7.656723813 7.772459525 7.853546069 227382399 narJ Stress Oxygen limitation Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 9.102894369 9.215723885 9.105317289 9.426132241 9.164586156 9.25421877 8.696356982 9.396297565 8.780776042 9.056398906 9.079806406 9.538277095 256359684 ara Carbon cycling Carbon degradation Hemicellulose Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 8.627618893 8.914754719 8.91291468 8.511653518 8.485780895 8.179780132 8.584012378 8.878872885 8.96553569 8.915387495 8.796753674 8.896212468 72121627 pcc Carbon cycling Carbon fixation Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.476267984 8.809674948 8.468955286 9.060947948 9.159193242 8.793643314 9.091309223 9.426167337 8.926676104 9.537291649 9.011113402 9.047836826 260433929 oxyR Stress Oxygen stress Silicibacter lacuscaerulensis ITI-1157 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria lacuscaerulensis; 9.128236221 9.450591578 9.311517684 8.693234119 9.063251929 9.212071495 9.403357726 9.289786388 9.490691945 9.182670688 9.241198544 9.124155043 157382822 napA Nitrogen Dissimilatory N reduction enrichment culture clone MAR8 superkingdom:Bacteria; 9.231334679 8.960952211 9.113198322 8.236556888 8.100762787 8.118660582 34483923 ppx Phosphorus Phosphorus utilization Wolinella succinogenes superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Wolinella; 8.998808895 8.909688707 9.046499337 8.640202826 8.421696748 8.289473408 8.165974373 8.180850703 8.420598765 8.053708175 8.12733962 8.345237729 219719342 ArsC Metal Resistance Arsenic Stenotrophomonas sp. SKA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 8.983473371 8.878986308 9.24169243 8.196125895 8.517815456 8.50957852 8.501110043 7.694305483 8.765087381 8.540346262 8.745526253 8.604772829 115359960 tftH Organic Remediation Aromatics Chlorinated aromatics Burkholderia cepacia AMMD 8.22231404 8.326762256 8.224323374 8.192992737 8.13073232 7.79031776 8.325147691 8.380863289 8.328786497 8.180836623 8.386920199 8.009517635 68263043 pstA Stress Phosphate limitation Corynebacterium jeikeium K411 7.945282096 7.913924107 7.083869176 7.662392667 7.751871176 7.69876098 7.184569171 7.885849572 7.335080914 7.560416468 161524787 silC Metal Resistance Silver Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 8.564558032 8.355890962 8.473288502 8.163785006 7.94305538 8.453709223 8.489754731 8.620301521 8.370499119 8.139947983 8.255785373 172059003 ahpF Stress Oxygen stress Exiguobacterium sibiricum 255-15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 9.136328811 8.97887273 9.122495956 8.701986487 8.436311949 8.645464368 8.558082987 8.740444274 8.593094027 8.995902026 9.282400827 8.784054334 163841682 pcc Carbon cycling Carbon fixation Renibacterium salmoninarum ATCC 33209 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Renibacterium;species:Renibacterium salmoninarum; 8.77227364 8.77556759 8.948761689 8.070759041 8.320959403 8.514064634 8.137835206 8.452549986 8.148690152 8.24206438 8.222539602 221370080 ChrA Metal Resistance Chromium Rhodobacter sphaeroides KD131 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 8.745991466 8.770535036 8.827928877 8.464725773 8.483850135 8.471922286 8.378251056 8.668016345 8.501231446 8.536529819 8.418107739 8.737766492 114540427 pcaG Organic Remediation Aromatics Other aromatics Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 9.608738289 9.390809742 9.424035151 7.741772295 8.255956035 8.517942 8.954014753 8.029199206 8.181610205 8.217663548 8.518488185 92394063 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Psychrobacter cryohalolentis K5 8.136009294 7.886717116 8.202821339 7.35094317 7.237303674 7.190531149 7.256021449 7.247878196 7.766778299 7.32401112 6.8548338 7.247050182 148501929 AceB Carbon cycling Carbon degradation others Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.098846466 8.03341762 8.03177617 8.220007971 8.173536772 7.578229217 7.850931097 8.47070564 8.153679695 8.325711378 8.145204137 8.402926334 170114871 amyA Carbon cycling Carbon degradation Starch Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 8.336417583 8.065218175 8.076393253 7.790729827 7.420782501 7.662449674 7.42186898 7.748003668 8.366863065 7.836007038 7.421019833 7.742040642 90335930 mer Metal Resistance Mercury Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 8.744086574 8.580634434 8.478741696 8.946314397 8.474707867 8.350878642 8.862318066 8.852405308 8.734071751 8.536116031 8.428038952 8.611412001 258561595 proV Stress Osmotic stress Corynebacterium genitalium ATCC 33030 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium genitalium; 9.529301338 9.534030127 9.47873679 9.048342252 9.11678946 9.420324317 9.460141155 9.214883435 9.686008633 9.196368443 9.380558626 9.203929286 169793448 narG Nitrogen Denitrification uncultured bacterium 8.758425183 8.707171847 8.818208095 7.980635979 8.344324712 8.311687764 8.729672944 7.88476615 8.634574741 8.207863767 8.080288481 77973365 SMR_antibiotics Antibiotic resistance transporter Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 8.345158174 8.532392492 8.711284292 8.418198521 8.144617872 8.306810152 8.051521709 8.207485127 8.33181945 8.205236966 8.152142927 8.324970336 110635253 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 8.57085606 8.602331859 8.796346897 8.791395906 8.651392579 8.789703107 8.803833286 8.789587399 9.019879711 8.804901118 8.656135725 37955634 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.037255867 7.785294194 8.060938468 7.435312299 7.47648425 7.324602535 7.072139986 7.116010513 7.779033302 7.247090425 7.15564196 7.383663475 99030632 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 9.176536196 9.104241709 9.212953918 8.346679809 8.210288847 8.630026788 8.892894499 8.469802559 8.505522425 8.43445784 8.675703803 8.805263838 89512460 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 9.240914347 9.757335663 9.567410326 8.88135458 9.105381152 9.356431708 9.9506546 8.790817684 10.1200967 9.085637822 8.95717992 9.074893827 257442526 cydB Stress Oxygen limitation Campylobacter gracilis RM3268 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter gracilis; 8.465542381 8.265455198 8.475796907 8.367747727 8.060012939 7.609139781 7.709289444 7.804913495 8.173091368 7.959614245 7.583085378 41408155 linB Organic Remediation Pesticides related compound Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 8.471882477 8.792774358 8.446588127 8.333264074 8.607737577 8.746689457 8.477526037 8.687950604 8.480550089 8.443081372 8.6466766 8.468457457 256842338 cda Carbon cycling Carbon degradation Starch Parabacteroides sp. D13 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides; 9.176993448 9.341641363 9.282420524 8.687946984 8.765756224 8.326234029 8.611593168 8.420343942 8.552762748 8.493087795 8.732120472 241213822 pcc Carbon cycling Carbon fixation Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 10.12367716 9.362390536 7.486290042 7.352167909 7.492639497 7.686803683 7.455096218 8.00075012 7.698270984 8.461571064 8.180244572 99030507 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 8.592331962 8.740266511 8.576380781 8.193884754 8.63070818 8.956035815 9.142633048 8.666220417 8.712926892 8.486812947 8.743715694 89358233 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 9.835717536 9.939028622 10.15423802 10.05410548 10.27100649 10.01216026 10.33337845 10.44351503 10.36255337 10.59786315 10.31131578 10.42532161 111019833 nagG Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus jostii RHA1 8.529920659 8.632853078 8.336012717 8.282625456 8.193995687 8.330675403 8.278112843 7.880447945 9.083089459 7.896390392 7.841204764 8.024220265 189307350 amoA Nitrogen Nitrification superkingdom:Bacteria; 8.704499387 8.850594052 8.751787948 9.002439718 8.927519076 9.212501801 8.735333481 9.218363052 8.639243705 9.119950414 9.265288881 8.517349557 54027418 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 8.274557281 8.298619312 8.597590759 8.496155019 8.303448284 8.121874225 8.341861257 8.77232721 8.584324899 8.63440684 8.239153536 8.555234076 109625740 trzN Organic Remediation Herbicides related compound Haloquadratum walsbyi DSM 16790 9.502192102 9.367384165 9.567294876 9.074413932 9.043673206 8.927470799 8.614894313 8.762015923 8.829960772 8.826778401 9.146015612 229790104 Tet Antibiotic resistance other Abiotrophia defectiva ATCC 49176 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Aerococcaceae;genus:Abiotrophia;species:Abiotrophia defectiva; 9.553352941 9.479222008 9.726028575 9.017314065 9.107562289 9.214310622 9.166205037 9.250333949 9.639963798 9.582283051 9.783137169 9.681576912 240168124 katE Stress Oxygen stress Mycobacterium kansasii ATCC 12478 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 8.924313753 8.619328408 8.798602922 9.15619825 8.884322191 8.699309869 8.998381572 8.775692837 8.907113561 8.919988608 8.916836609 8.413828112 161394399 AceB Carbon cycling Carbon degradation others Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 8.146790951 8.004810382 7.893015275 7.760880941 7.853645526 7.803567477 7.944748173 7.663704537 7.742634583 119385402 MFS_antibiotic Antibiotic resistance transporter Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.559295625 8.62289395 8.273721332 8.090318385 7.615174222 8.35520931 8.641210426 7.98062535 8.624400754 8.039467262 8.29760004 8.087964564 258652137 glnA Stress Nitrogen limitation Nakamurella multipartita DSM 44233 8.162326937 8.541679161 8.690823274 8.675031483 8.431620796 8.261952855 8.721793768 8.676803449 8.106186763 8.526577541 8.304070536 8.087373413 284163511 iro virulence Haloterrigena turkmenica DSM 5511 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloterrigena;species:Haloterrigena turkmenica; 8.894446909 8.944116475 8.971162122 8.280661489 8.4425935 8.473091927 9.02751556 8.209598716 8.95029632 8.355906434 8.324301119 8.334041223 255107178 oxyR Stress Oxygen stress Thalassiobium sp. R2A62 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Thalassobium; 8.173511849 8.49845644 8.361131451 8.836672975 8.524103941 8.358109779 8.422125009 8.367104579 8.593369726 7.917853188 8.043434254 8.027935963 118668503 silC Metal Resistance Silver Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.919934678 9.066647958 8.705150868 8.960175888 8.921711502 8.771854454 8.964754809 8.729021948 8.762847982 8.566334536 8.569531593 8.663294433 197626731 nitA Organic Remediation Aromatics Other aromatics Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 8.604553948 8.942801793 8.997625784 8.863429314 9.22152833 8.958880754 139003422 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 9.334771165 9.640583244 8.905685782 8.519197578 8.787662442 8.970364364 8.445337251 8.672989997 8.660635742 8.695315545 8.557948986 8.64663867 66801911 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 9.908814964 9.873880294 10.00920943 9.436911274 9.429936565 9.300823037 9.182460706 9.244146764 9.688818832 9.716030648 9.836729085 9.749852761 169241778 inv virulence invasion Mycobacterium abscessus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 9.107166508 9.167076955 9.172209265 8.800619417 8.733408219 8.548915757 8.788610512 8.85479017 8.378661533 8.905478252 8.911937692 8.713482445 188578912 pcaG Organic Remediation Aromatics Other aromatics Xanthomonas oryzae pv. oryzae PXO99A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 8.899932751 9.091143945 8.280224722 8.421213592 8.821214724 8.687011122 8.55099625 8.915658495 8.709238913 8.850813339 8.915654092 8.649401838 73542239 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 11.16785294 10.68857882 10.97564184 10.90895081 10.68470868 10.50011565 10.76734948 10.48372611 10.51237649 10.7872262 10.89237519 10.60691417 113526550 nagG Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.185893511 8.195929223 7.675842116 7.558087805 7.353580279 7.381210271 7.804410053 8.274368926 7.590445916 7.604316688 7.789116038 83368250 ureC Nitrogen Ammonification Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 9.668426004 9.54129693 9.628050872 9.146337785 8.98793894 8.987891069 8.693596128 8.907863095 8.80495723 8.940121871 8.952508282 9.314743661 239737034 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 7.94667991 8.359471528 8.182570897 8.024356357 7.836595455 8.000553009 8.467324195 8.014446812 7.938137111 7.833996749 7.943382614 37925737 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 9.056167175 8.934690277 9.180887235 8.383981348 8.040248814 8.436381627 8.153772539 7.86360293 8.282025488 8.132283939 8.06894692 8.604041951 66046729 HBH Organic Remediation Aromatics BTEX and related aromatics Pseudomonas syringae pv. syringae B728a 8.45774676 8.386091885 8.282271884 8.003075634 7.826853711 7.757053769 7.521460449 8.102837463 7.908758564 8.510689196 258561863 pcc Carbon cycling Carbon fixation Corynebacterium genitalium ATCC 33030 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium genitalium; 8.500315335 8.466901289 8.699590844 8.62880425 8.325864055 8.732375411 8.810959173 9.102873985 8.732560767 8.683580557 8.774334155 158345045 DNA_polymerase_type_I Bacteria phage REPLICATION Pseudomonas phage LKD16 order:Caudovirales;family:Podoviridae;genus:phiKMV-like viruses; 9.320549244 9.381687723 9.181263109 8.96085693 9.175449286 8.993288885 111150488 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 8.78011044 8.727826657 9.074627269 8.427168154 8.3714396 8.43209169 8.684873595 8.371090202 8.796574259 8.485206253 8.004170278 8.535001635 94423445 ZntA Metal Resistance Zinc Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 7.747420633 7.817992721 7.690629205 7.705725865 7.908550111 7.87037925 7.872745195 7.744475701 151563097 proV Stress Osmotic stress Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 8.11704696 8.171849207 7.971609033 7.916423022 8.176345215 8.334098086 8.10415307 8.03755751 7.671343111 7.748917521 7.560763065 84778339 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9.236178298 9.18128034 9.294342482 8.628257212 8.635692463 8.521575467 8.24671588 8.728314066 8.214932746 8.441334853 8.48475546 8.684327228 33188340 B_lactamase_A Antibiotic resistance Beta-lactamases Mycobacterium smegmatis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 7.99639007 7.771232147 7.95879855 7.385610388 8.148003116 7.922306097 7.612969358 7.872092168 8.128763229 119460795 Arylest Organic Remediation Aromatics Other aromatics marine gamma proteobacterium HTCC2080 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.48147748 8.132569955 8.498838735 7.875224895 7.679545341 7.917841271 7.901404939 7.501269731 7.891416596 7.694556597 7.697625963 7.468335743 228740805 cap virulence capsule Bacillus cereus AH1273 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 7.358715407 7.248169046 7.277990442 6.813876002 7.524297318 6.986924036 7.354315196 10640455 CopA Metal Resistance Copper Thermoplasma acidophilum 8.286442044 8.046051684 7.944335757 7.478953385 7.14383942 7.354545361 7.556072506 7.478263242 222438078 phn Organic Remediation Herbicides related compound Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 8.428913034 8.596791188 8.069536961 8.154771476 8.222090886 8.072993285 7.927952234 8.106207755 8.005818702 8.2211822 7.953003135 126730580 BADH Organic Remediation Aromatics Other aromatics Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 8.636873077 8.67119085 8.723546843 8.564607999 8.394768428 8.242436386 8.547746704 8.314199127 8.616970511 8.613308825 8.284345458 198404183 rd Organic Remediation Chlorinated solvents Dehalobacter sp. WL superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Dehalobacter; 8.35164519 8.148746625 8.727605621 8.25579545 8.285118149 8.04838877 7.911753891 8.103754088 8.351773608 7.86695914 8.225016835 87199357 oxyR Stress Oxygen stress Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 9.203583676 9.332340043 8.93971425 9.281039365 9.437082532 9.314618362 9.727086875 9.383149799 9.382365014 9.114061816 9.570497998 9.548392795 116749864 silP Metal Resistance Silver Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 8.842234572 8.877116464 8.936888021 8.366961317 8.388546073 8.325832677 8.347150453 8.202771708 8.245430692 8.360671764 8.321739439 8.533792533 68568603 CODH Carbon cycling Carbon fixation Sulfolobus acidocaldarius DSM 639 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus;species:Sulfolobus acidocaldarius; 9.180944816 9.234362711 9.328278256 8.407037053 8.480755392 8.223361385 8.519465498 8.297463899 238783064 amyA Carbon cycling Carbon degradation Starch Yersinia bercovieri ATCC 43970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 8.390433877 8.329091955 7.790823501 7.980914007 8.326975656 8.369790745 8.68120553 8.614405176 238718416 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 8.436255458 8.503476328 8.394193324 8.109489859 8.031765986 7.988032388 7.740873571 7.568427169 7.930271095 7.825971221 8.071393071 7.769388668 88696575 endochitinase Carbon cycling Carbon degradation Chitin Bionectria ochroleuca superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Bionectriaceae;genus:Bionectria; 8.35309756 8.560004108 8.351647523 8.430711275 8.211011541 8.810937849 8.490333371 8.273488003 8.486285768 8.533681907 8.296527657 219675001 linC Organic Remediation Pesticides related compound gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 9.519270566 9.376329419 9.547651184 8.838117262 8.761959275 8.752021097 8.583280598 8.707153684 8.769112786 8.650374927 8.841450488 9.047841499 76253301 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.834871554 8.446414866 8.90674802 8.242261119 8.089192518 8.067145512 8.012600407 8.102165899 8.221109027 7.911570121 8.177831099 8.01340962 229786638 amyA Carbon cycling Carbon degradation Starch Catonella morbi ATCC 51271 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Catonella;species:Catonella morbi; 8.304545687 8.395491581 8.478433021 8.342920123 7.88072517 7.765679127 7.477279136 7.238584936 7.938020422 7.859348619 7.494440258 7.845279656 85668774 ahpC Stress Oxygen stress Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.385537312 8.470829809 8.278592378 7.389770992 7.479477456 7.593229738 7.225617763 7.70894175 7.616938654 7.764164111 15234620 pbrA Metal Resistance Lead Arabidopsis thaliana 8.304477348 8.156452023 8.352502657 7.638535991 7.85780223 8.24129978 8.23692029 8.443990145 8.346831003 8.134256884 8.595644616 8.146003929 90104852 rubisco Carbon cycling Carbon fixation Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.635232592 8.435220329 8.704419176 8.91129741 8.899580255 8.304426781 8.688670922 8.498420896 8.615443632 8.387801596 8.427335623 8.364349068 254241360 pcc Carbon cycling Carbon fixation Pseudomonas aeruginosa 2192 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.644562908 8.428885904 8.290915436 8.197450627 8.154497781 8.113040821 8.105558997 8.122652576 8.326099427 7.774088027 8.335596069 7.902839747 209532325 atzC Organic Remediation Herbicides related compound Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 9.766768463 9.788001531 9.881668062 9.184036331 9.101568259 9.172253647 8.90701144 8.706548998 8.947136976 8.89134122 8.859603572 9.261919812 242773497 MFS_antibiotic Antibiotic resistance transporter Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 8.014034956 8.033110694 8.161832808 7.3893963 7.212304625 7.25315598 7.32471265 7.041104977 7.432789614 7.204325071 7.403757371 78093536 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 10.21482165 9.991159674 9.804447681 9.915847452 9.992516544 9.862350949 9.935025876 10.28035763 10.12526231 9.995284539 9.922140599 9.925529865 229735473 B_lactamase_C Antibiotic resistance Beta-lactamases Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 8.78088106 8.626504373 8.579222507 8.296508507 8.006633776 8.212274314 8.600697163 8.400146472 116753935 pstB Stress Phosphate limitation Methanosaeta thermophila PT 9.12943544 8.699003087 9.30945782 8.259017333 7.978905307 8.188296404 8.045255985 8.604143386 8.679805036 8.442603915 456029 exoglucanase Carbon cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas; 8.786415596 8.621397531 8.584433844 8.14773582 7.845989971 8.502571806 8.918455996 8.558005297 8.67802979 8.692727842 8.655967051 183983455 linB Organic Remediation Pesticides related compound Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 8.027909308 7.96208766 7.759292169 8.457155872 8.047034977 8.006483567 7.745265518 8.147242191 7.880024435 182382469 narG Nitrogen Denitrification uncultured bacterium 8.83119844 8.546434693 8.458258734 8.820847335 8.060788931 7.991306217 7.882922064 8.327327596 126460064 dsrA Sulphur sulfite reductase Pyrobaculum calidifontis JCM 11548 8.188479851 8.33520701 8.455204613 8.323485488 8.307562967 8.131766683 8.436369939 8.386996139 8.434212656 8.240129276 8.281181873 8.068844566 226941883 obgE Stress Radiation stress Laribacter hongkongensis HLHK9 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Laribacter;species:Laribacter hongkongensis; 8.034368185 8.017976217 8.251858258 7.723373 7.471971122 7.530450485 7.695118508 7.485036745 8.139782866 7.607273438 7.363012298 7.675337888 116228536 grpE Stress Heat shock Candidatus Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 8.659287991 8.822333617 8.335288053 8.681953097 8.513301576 8.652797288 8.737238312 8.159141452 8.456857159 8.055417258 224027921 APS_AprA Sulphur adenylylsulfate reductase uncultured gamma proteobacterium 8.493426064 8.420563144 8.607189118 8.057286627 8.223611804 8.359140644 8.623853387 8.307409606 8.542089836 8.400060526 8.421681323 8.603052198 218750944 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.620530821 8.576733263 8.649995867 7.995085296 7.881530469 7.931295286 8.378703384 7.973561016 8.76839684 8.124698776 7.641607648 8.159334255 187728530 CopA Metal Resistance Copper Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.55094899 8.303500417 8.441440205 8.178996907 8.050048086 7.879369646 8.102063631 8.327836472 8.208901524 8.335878039 8.425210467 8.226303244 260435495 SMR_antibiotics Antibiotic resistance transporter Synechococcus sp. WH 8109 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.595782928 8.696888335 8.943028406 8.474677376 8.444873539 8.502330027 8.741327428 8.501733393 8.731956944 8.415270783 8.591886937 8.658691756 87199304 pimF Organic Remediation Aromatics Aromatic carboxylic acid Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 9.428615468 9.518511526 8.517516578 8.347947598 8.523524623 8.965258028 8.728692887 8.989773852 8.832350908 8.649815578 76874003 ppx Phosphorus Phosphorus utilization Pseudoalteromonas haloplanktis TAC125 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas haloplanktis; 7.983068381 8.347367618 8.330564437 8.530692064 8.319531078 8.120516192 8.052088397 8.288012773 8.24838485 8.326276827 8.126945193 7.917808223 260223593 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.698780702 8.455974543 8.463312305 8.332426964 8.196369154 8.140118783 8.463636817 8.455949988 8.304435959 8.542556907 8.441870669 8.290452631 110631274 nifH Nitrogen Nitrogen fixation uncultured soil bacterium superkingdom:Bacteria; 8.422710271 8.121925035 8.194103792 7.926176214 7.680154879 7.93656826 7.732516535 7.84732636 8.169461273 7.708864977 7.830170297 7.898106752 163850640 glx Carbon cycling Carbon degradation Lignin Methylobacterium extorquens PA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 8.912204196 8.882598296 8.648665869 8.251001647 8.339952583 8.256651748 8.670795417 7.879427884 8.661907088 8.085147779 8.396926024 8.139346877 256824200 ahpC Stress Oxygen stress Kytococcus sedentarius DSM 20547 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermacoccaceae;genus:Kytococcus;species:Kytococcus sedentarius; 8.279876851 8.125457632 8.485946623 8.184888924 7.601865953 7.939010691 7.797829012 8.343896757 7.920442401 7.858631766 7.873042459 72119613 nagG Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.512740362 8.603187784 8.709543518 7.936613745 7.955916926 8.242974656 8.685011042 8.422508627 8.212056189 8.460460028 8.470053797 262208728 B_lactamase_A Antibiotic resistance Beta-lactamases Comamonas testosteroni CNB-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.641548432 8.379290063 8.437284848 8.254626346 8.332209312 8.26956214 8.424638452 8.325014718 8.260184459 7.900717735 7.676026308 7.840797842 117619830 mer Metal Resistance Mercury Aeromonas hydrophila subsp. hydrophila ATCC 7966 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas hydrophila; 9.212482665 9.119562755 9.250951374 8.743442592 8.651378266 8.683340646 8.51794341 8.922470868 8.57114102 8.763552239 8.725719052 8.860117697 29466012 norB Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.108303062 7.97464127 7.721149404 7.737733571 7.523344051 7.858358338 7.527285097 7.811700866 7.620171066 7.413724293 7.250649787 87308465 sigma_24 Stress Sigma factors Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 9.332537719 9.209173661 9.224703939 8.353699601 8.361000314 8.308627419 8.321192837 8.393907867 8.46521907 8.493226684 8.311606997 8.511803161 116753568 glnA Stress Nitrogen limitation Methanosaeta thermophila PT 9.36716821 9.471019577 9.693361002 9.022427902 8.708784088 8.970181068 9.015624859 8.960317147 8.82317209 9.058036039 9.039203445 9.347177182 147669233 Ni_Fe_hydrogenase Energy process Energy process Dehalococcoides sp. BAV1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 8.433524983 8.500292896 8.94336245 8.192190776 7.634286123 7.816779289 7.053307624 7.197955342 7.883601389 7.507076991 7.411894581 7.696105698 241889408 glnA Stress Nitrogen limitation Gemella haemolysans ATCC 10379 7.172646843 6.93943614 6.79841672 6.749333642 7.051123768 171687653 ureC Nitrogen Ammonification Podospora anserina superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 10.08195084 10.15254491 10.14178986 9.229875238 9.354799039 9.374684954 9.889988916 9.424981992 9.356794927 9.333599163 9.439709057 9.73552667 218535247 nagI Organic Remediation Aromatics Aromatic carboxylic acid Bacillus cereus AH820 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 8.385573329 8.432654409 7.396732639 7.461941121 7.311808487 7.198485245 7.487393944 94550397 glnR Stress Nitrogen limitation Candidatus Koribacter versatilis Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 8.52593695 8.855948377 8.763031249 7.674968298 7.897307855 8.289587341 8.834754225 8.190033221 8.441185722 8.399505164 8.514774034 186684867 phoB Stress Phosphate limitation Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 7.996846494 8.090525726 8.245286208 7.418235642 7.536869164 7.48370931 119670562 catechol_B Organic Remediation Aromatics Other aromatics Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8.450750892 8.489438632 8.348106476 8.060171114 7.589475903 7.809052512 8.140567519 7.884678077 7.954445496 8.277342511 7.990755556 78034324 silC Metal Resistance Silver Xanthomonas campestris pv. vesicatoria str. 85-10 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas euvesicatoria; 8.349574663 8.321867252 7.709930933 7.726660133 7.77698186 8.048316977 7.27096765 7.595962874 7.715599296 8.311637693 219950521 B_lactamase_C Antibiotic resistance Beta-lactamases Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 9.689559868 9.548373971 9.607626025 8.936823156 8.831654108 8.896036995 8.770464218 8.550387841 8.826435094 8.682065146 8.691777065 9.002105783 149121928 nmoA Organic Remediation Aromatics Nitoaromatics Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 8.399303173 8.264507464 8.005490157 7.898617342 7.639873587 7.916535679 7.773578014 7.60847291 7.961087126 8.063192496 7.814374099 87280972 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.200272258 8.124477469 8.509502906 8.058879008 7.879341175 7.885403946 7.902711352 8.136072183 8.441910949 8.136599074 7.735684249 8.005013308 126434240 bphA Organic Remediation Aromatics Polycyclic aromatics Mycobacterium sp. JLS 8.487798976 8.448776274 8.489027397 7.868252221 8.120703378 8.035830621 7.710888542 8.452189353 8.265146894 8.442706654 8.313941167 8.285784528 148266015 nrfA Nitrogen Dissimilatory N reduction Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 9.818105287 9.714294629 9.951484866 8.865259935 8.799744607 9.20093358 9.326675658 9.477824702 9.343721359 9.754233087 9.803476194 9.750595792 148830028 pimF Organic Remediation Aromatics Aromatic carboxylic acid Erythrobacter sp. SD-21 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 8.995114517 8.873413621 8.769968249 8.922696646 8.540811344 8.20071847 8.750408879 8.841024308 8.699046693 8.56264806 8.402996068 8.457677254 258553755 AceB Carbon cycling Carbon degradation others Nakamurella multipartita DSM 44233 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 8.655829761 8.878773376 8.048578308 7.596246355 8.095456696 7.901786019 7.572608535 7.798212912 7.871353819 8.083679923 149902479 pstB Stress Phosphate limitation Clostridium beijerinckii NCIMB 8052 7.939052002 8.175346483 7.368678396 6.715245227 6.847726948 156233996 carA Organic Remediation Aromatics Heterocyclic aromatics Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 8.549421154 8.274651072 8.599400824 8.36404633 8.376224156 8.028578173 8.165306949 8.425420611 8.34418184 8.16471975 8.330821867 229817140 obgE Stress Radiation stress Bifidobacterium angulatum DSM 20098 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium angulatum; 9.078908131 8.925601153 8.923784573 8.607086032 8.622097744 8.566751655 8.652305848 8.6481113 8.456564869 8.776399254 8.789717651 8.715182819 237883137 pstC Stress Phosphate limitation Micromonospora sp. ATCC 39149 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 8.569448266 8.523468775 8.429795594 7.95095891 8.139783866 8.609113429 8.00737362 8.494129995 8.267818011 8.186708713 8.088073081 111149678 fnr Stress Oxygen stress Frankia alni ACN14a 8.454826558 8.485917352 8.407197171 8.289037919 8.249402744 7.997620052 8.375651412 8.269378263 8.438796729 8.159550419 7.940423132 8.2200731 192814068 ara Carbon cycling Carbon degradation Hemicellulose Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 9.032076415 8.966007237 9.328050949 8.336882109 7.848260007 8.235465366 8.607631209 8.312240201 8.306578133 119485630 pstB Stress Phosphate limitation Lyngbya sp. PCC 8106 8.443076747 8.239161909 8.30885066 7.738967786 7.366664017 7.507122854 7.530693005 7.120475077 7.643993071 7.4732827 7.199549572 7.670503969 104781867 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 8.531229469 8.420853362 8.381102602 8.561516072 8.518137418 8.34787596 8.524469609 8.394485679 8.55632998 8.806267039 8.542305558 88182424 AceB Carbon cycling Carbon degradation others Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 7.608701997 7.763646119 7.849959944 7.346425029 7.747683276 7.647737987 7.668997439 7.562718395 7.521238124 54014925 linB Organic Remediation Pesticides related compound Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 7.922474746 7.921846621 7.631976942 7.624495765 7.952404178 8.086834022 7.92062416 7.602818609 7.710403862 121495568 narG Nitrogen Denitrification uncultured bacterium 8.487030313 8.469937667 8.427862634 8.47133622 8.76776256 8.712689242 8.406780085 8.728405516 8.557950505 8.530835298 8.839317048 8.450267734 580822 xylanase Carbon cycling Carbon degradation Hemicellulose Bacillus pumilus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 8.45161964 8.196545867 8.558771066 8.418596149 8.36715942 8.160519514 8.1274205 8.466847473 8.474664636 8.524604488 8.504619614 8.448683499 163857840 ppx Phosphorus Phosphorus utilization Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 9.835208345 9.619077021 9.68672562 9.452003804 9.267255516 9.176794311 9.541340553 9.48407985 9.458579044 9.319598385 9.343967798 9.47507555 188583429 scnABC Organic Remediation Others Methylobacterium populi BJ001 8.697218983 8.943913642 8.769102937 8.057883431 8.066709562 8.151221695 8.447516216 8.02327777 8.527196137 8.09992644 8.145537325 229478275 ahpC Stress Oxygen stress Planctomyces limnophilus DSM 3776 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces limnophilus; 8.14189866 8.163326424 7.28070156 7.269956349 7.344184928 7.168137904 6.969807595 7.57150736 7.150949939 7.019435995 7.390952314 119669174 pimF Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 9.15558221 8.974177717 8.59927163 9.412557115 9.551753739 9.528405471 8.992344378 9.784359517 8.646552682 9.371574619 9.494673141 9.664790526 196200614 tfdA Organic Remediation Aromatics Chlorinated aromatics Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.331961497 8.555559931 8.734984288 7.972956745 7.866434911 7.853179915 7.394797073 7.521635523 7.82418029 88936412 TehB Metal Resistance Tellurium Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 8.566619195 8.594538876 8.638422121 8.229549516 8.035153763 7.734362176 7.786263332 7.633264655 7.67716686 7.825380217 7.885560977 256357794 pstB Stress Phosphate limitation Catenulispora acidiphila DSM 44928 8.134690699 8.380522459 8.149993611 8.18974971 8.270480731 8.228874613 8.264876154 8.171238757 8.490240986 8.395008587 8.439203795 8.284189448 120609361 narH Stress Oxygen limitation Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 9.705544567 9.576306529 9.890613673 9.192032386 9.113800567 9.058140255 8.86778484 8.921195057 9.075485064 9.073095231 9.10238136 9.373453287 153005942 cytochrome Energy process Energy process Anaeromyxobacter sp. Fw109-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 7.904745311 7.704734646 7.5118431 7.383264461 7.597563206 7.344215349 7.583311496 7.48405342 7.789820332 7.600021873 111150376 limEH Carbon cycling Carbon degradation Others Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 8.419990397 8.167727462 8.404089052 8.201539184 8.325511142 8.152622197 8.355694662 8.658826462 8.438211748 8.330505119 7.886590409 74038408 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.370519245 8.125217686 8.014663581 7.945959269 7.910661649 7.786038218 8.339349098 7.874429623 7.896007722 8.227017113 116252473 ChnA Organic Remediation Other Hydrocarbons Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.256676272 7.982168493 7.665918314 8.175371297 7.971680161 7.716555766 7.762523051 7.656644933 8.351343222 7.556116373 196166626 BchY other category chlorophyllide reductase uncultured bacterium superkingdom:Bacteria; 8.55441621 8.242804498 8.135879605 8.04574988 8.007154686 110285586 ZntA Metal Resistance Zinc Mesorhizobium sp. BNC1 8.591936379 8.396940425 8.260948738 8.192294523 8.166124524 7.826730312 7.689987156 8.156167397 8.162523703 8.194397079 8.226066466 8.445564811 72118572 pcc Carbon cycling Carbon fixation Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 9.253474304 9.049746067 8.755090341 9.115569548 9.099168094 9.015636356 8.88537759 9.192556617 9.083686609 9.02380992 9.12724746 9.140379393 119694970 ureC Nitrogen Ammonification Mycobacterium sp. KMS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.731478499 8.348911826 8.170562788 8.735991109 8.570550514 8.510566078 8.199204756 8.677276536 8.496105934 8.428924057 8.750939764 8.323151208 163740114 fnr Stress Oxygen stress Phaeobacter gallaeciensis BS107 9.258057822 9.382172906 9.432856823 8.843387729 8.504335582 8.937908918 8.792674872 8.627320786 8.945697984 9.034220775 8.964223562 9.123736125 196229501 pstB Stress Phosphate limitation Chthoniobacter flavus Ellin428 10.47385546 10.48806144 10.33959895 9.895882954 10.73244838 10.61386248 10.91447481 9.659247573 11.09663601 10.10924506 10.03707123 10.14491173 227963251 SMR_antibiotics Antibiotic resistance transporter Tsukamurella paurometabola DSM 20162 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 8.697416796 8.127531927 7.839339754 7.665011939 8.024596005 7.998229563 8.088270276 8.015168574 8.387102697 7.912407243 78219144 hly virulence hemolysin Desulfovibrio desulfuricans subsp. desulfuricans str. G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 8.796426647 8.675006466 8.808169933 8.282327428 8.294063145 8.082354467 7.976479218 7.827660059 8.323160234 8.040642268 8.170452146 8.326555065 119671792 norB Nitrogen Denitrification Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8.532756118 8.678110087 8.507555674 8.072339709 8.630590602 7.871929975 8.351633007 8.379769014 8.780984753 150007696 czcC Metal Resistance "Cadmium,Cobalt,Zinc" Parabacteroides distasonis ATCC 8503 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides distasonis; 8.969844084 9.152092569 9.039795786 8.420871066 8.38799711 8.810420972 8.912997603 8.456524524 8.592585417 8.595633528 8.895904406 8.659781021 148628322 nahA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 8.937062159 8.618730368 8.592508208 8.262532988 8.167467594 8.117360069 7.860762683 7.974489707 8.109402322 8.097423683 7.928954662 8.149802137 17135268 endoglucanase Carbon cycling Carbon degradation Cellulose Nostoc sp. PCC 7120 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc; 8.772610048 8.498896949 8.765872293 7.669171271 7.733292028 7.761500277 7.862065294 7.723419018 8.144831496 7.987977758 7.934052352 8.155924945 26278722 narG Nitrogen Denitrification uncultured bacterium 8.223479725 8.450330624 8.355649018 7.820474337 7.558168309 7.779910859 8.196283794 8.005238146 8.654910256 8.110016296 8.079416627 8.113600757 126460483 pstB Stress Phosphate limitation Pyrobaculum calidifontis JCM 11548 10.01185731 9.667291524 9.733071992 9.401281348 9.168194247 8.906975655 9.47622569 9.642796049 9.164215836 9.323151054 9.260712976 9.390364165 190712647 obgE Stress Radiation stress Lactobacillus casei BL23 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus casei; 8.72548944 8.614494198 8.925359934 8.315726186 8.092578338 8.056064761 8.278752074 7.931485904 8.57385179 8.135130162 7.928495047 8.212892571 113890133 ChrA Metal Resistance Chromium Shewanella sp. MR-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 8.795028231 9.122244865 8.803497011 8.902235699 8.755037621 8.576828886 8.739444801 8.716303372 8.59762995 8.647258132 8.604073114 8.786749159 118731916 silC Metal Resistance Silver Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.594336722 8.483816788 8.572743109 8.348021101 8.145997771 8.159764947 8.103288403 8.037766002 8.105203344 8.008446811 8.419298396 86284315 nmoA Organic Remediation Aromatics Nitoaromatics Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.451493167 8.509302325 8.529999306 7.515855462 7.977302363 7.825582519 8.152535278 7.713959696 8.310280077 7.59639982 7.343169002 7.759919808 162281193 ChrA Metal Resistance Chromium Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 9.653804974 9.298763609 9.303684817 9.406185181 9.46939664 9.211960035 9.098728733 9.513296067 9.228555123 9.085860506 9.141850853 9.331273471 148273114 Arylest Organic Remediation Aromatics Other aromatics Clavibacter michiganensis subsp. michiganensis NCPPB 382 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 9.104773896 9.349391109 8.969331968 8.588278861 8.771549208 8.837193772 9.082978145 9.31631414 8.770804828 9.456079994 9.394986687 9.535991252 209499378 phtA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.710367771 8.67823831 8.457127031 8.70953356 8.59867431 8.341424253 8.919753639 8.166042606 8.749520451 8.622904575 8.774098935 71556145 mdlD Organic Remediation Aromatics Other aromatics Pseudomonas syringae pv. phaseolicola 1448A 8.703923086 8.699127014 8.589450809 8.428910739 8.716470705 8.829775466 8.908938382 8.83701497 8.831647047 8.728389036 8.534192119 99083115 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.9906498 8.200551869 7.442596345 7.475029863 7.402658579 7.239010561 7.235722986 7.721367931 7.483956348 7.370284285 7.479181148 217503166 sigma_70 Stress Sigma factors Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 8.200402355 8.202172328 8.182289174 7.534152262 8.262155308 7.947527408 8.578277342 7.662439218 7.942384259 8.202482721 7.818366071 269832620 amyA Carbon cycling Carbon degradation Starch Vibrio harveyi 1DA3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 8.345495687 8.551911976 8.787402151 8.202927369 7.952183947 7.817634068 7.288392552 7.082204262 7.852928191 7.990934474 7.914676548 7.914742322 119898872 hrcA Stress Heat shock Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8.876815044 8.93172183 9.258994486 8.579113381 8.623516609 8.109085664 7.867461731 8.157098836 8.442046839 8.072916241 8.1560447 8.40517702 154493428 ArsC Metal Resistance Arsenic Parabacteroides merdae ATCC 43184 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides merdae; 7.42700016 7.483348604 7.520551565 7.619118689 7.746578454 7.845049881 7.822353269 7.708699273 218712579 hdnO Organic Remediation Aromatics Heterocyclic aromatics Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 8.032882758 7.835963165 7.697618845 7.89208918 7.969768478 7.978428212 8.344020528 8.118354143 8.644014212 8.617124093 105897501 ChrA Metal Resistance Chromium Burkholderia cenocepacia AU 1054 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 10.43482828 10.33249204 9.836541491 10.16338741 9.922902344 9.89342705 10.37956 10.05608234 9.943178817 9.746610896 9.833463438 9.799375768 91798449 oxyR Stress Oxygen stress Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 9.190300418 9.251040015 9.353454531 8.974845867 8.898759376 8.774809037 8.737077457 8.672186028 8.810996754 8.786297913 8.732174308 8.865492154 166029591 glnA Stress Nitrogen limitation Dorea formicigenerans ATCC 27755 8.823637178 8.651519178 8.970968265 8.622281059 8.429212436 8.119855625 7.882248968 7.763905197 8.360592338 8.015644803 7.794474915 8.173529534 260605824 proV Stress Osmotic stress Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 7.50518196 7.362218134 7.010314344 7.191463906 7.807304178 7.208721625 7.30980644 7.278142473 89899662 ZntA Metal Resistance Zinc Rhodoferax ferrireducens T118 8.343215113 8.237670787 8.328055922 7.811698213 7.955212473 8.226290125 8.438252913 8.150292682 8.450417587 8.176390353 8.214623478 8.026711694 210068799 glx Carbon cycling Carbon degradation Lignin Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 8.747391081 8.820334745 8.822132089 8.373317407 8.648077503 8.486141999 8.315712263 8.874958586 8.373064051 8.53813189 8.619238084 8.642652466 261840528 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 9.569575498 9.588219467 9.716441814 9.173640109 8.858584122 8.957298175 8.662170842 8.737588931 9.043300113 8.978097768 9.297052061 56311794 ZntA Metal Resistance Zinc Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 9.407291484 9.362460722 9.51754121 8.747681002 8.746432921 8.867700986 8.827322113 8.596286633 9.169259552 8.823785881 8.878270807 8.888369336 28273025 mnp Carbon cycling Carbon degradation Lignin Phlebia radiata 8.377970288 8.330185393 8.496971727 8.400240106 8.249633938 8.242537227 8.644748523 8.300486092 169616852 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 7.536831175 7.855062569 7.663053035 7.189264444 8.126700028 7.960293105 7.937781184 7.929595862 148555711 gyrB other category gyrB Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.673745393 8.884462578 8.43097427 8.210766504 8.585807175 8.597910355 8.266964773 8.602048673 8.437079039 8.547688673 83575562 alkK Organic Remediation Others Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 8.215451358 8.743321449 8.768134199 8.736874899 8.789827453 8.727505751 8.844563811 9.172208163 8.493053871 9.176014698 8.770555525 8.595481872 126628391 pimF Organic Remediation Aromatics Aromatic carboxylic acid Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 8.884505742 8.252201217 8.84418088 8.895550552 8.969926513 8.810700897 8.465085548 9.19690161 8.54405343 8.915406705 8.910340926 9.256877109 96771661 TerD Metal Resistance Tellurium Streptomyces ambofaciens ATCC 23877 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ambofaciens; 9.243961333 9.402237649 9.466150074 8.486898353 8.402417463 8.598160356 19909631 gyrB other category gyrB Rhodobacter capsulatus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 8.371040243 8.093595601 8.216152568 7.473059838 7.396407198 7.48469203 7.42616137 7.314876284 7.68686203 7.357142058 7.475209242 7.73872478 56380859 sigma_70 Stress Sigma factors Geobacillus kaustophilus HTA426 9.181741335 9.019130163 9.201962998 8.523349356 8.219585139 8.371480884 8.262299595 8.185371563 7.492067227 8.415629575 8.130440307 8.656942427 14389271 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.13551213 8.214144064 7.769850107 7.426239877 7.162533397 7.541585252 7.223978346 8.008605807 7.459990147 7.10280218 7.497735365 111153178 MFS_antibiotic Antibiotic resistance transporter Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 8.490713792 8.66110211 8.532480287 8.58230964 8.312128995 8.199332671 8.462229248 8.433958765 8.546155839 8.382943399 8.282291411 8.418426034 194308403 sox Sulphur Sulphur oxidation Pelodictyon phaeoclathratiforme BU-1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 8.529928463 8.387454397 8.063218522 7.681925214 8.422988585 8.497931541 8.166057556 8.220090661 8.154936369 8.269479598 8.49175146 220915625 hydrogenase Energy process Energy process Anaeromyxobacter dehalogenans 2CP-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 8.223744477 8.113512275 8.364737303 8.503431066 8.466047658 8.083484781 8.469951429 8.298679883 8.209271844 8.511856254 8.104792509 67156338 Catechol Organic Remediation Aromatics Other aromatics Azotobacter vinelandii AvOP 9.091208908 8.757863026 9.027510963 8.16109677 8.309061772 8.574365935 8.889302474 8.461883516 9.418538075 8.340755176 8.380160841 8.52647295 171851576 ppx Phosphorus Phosphorus utilization Corynebacterium urealyticum DSM 7109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium urealyticum; 9.411041939 9.070645617 9.764240989 8.927323143 9.384523327 9.024084999 9.486320557 9.341612561 9.604987251 9.191957425 260903868 hrcA Stress Heat shock Brevibacterium linens BL2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium linens; 8.372017572 8.422667059 8.767588461 8.497417921 8.349821953 8.303358009 8.072046583 8.277340099 8.436255765 8.296094775 8.176169081 7.977618591 196206925 nitro Organic Remediation Others Cyanothece sp. PCC 8802 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.128176245 8.177805709 8.422521935 8.293650572 8.065330684 7.867721437 7.863458806 7.988297576 8.103089526 7.835371098 8.108403586 7.865394907 198265864 vanA Carbon cycling Carbon degradation Others Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 9.485977274 9.55662547 9.613025884 9.077612685 8.072395625 8.899745263 118472095 linB Organic Remediation Pesticides related compound Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 9.283876342 9.409785265 9.498169472 9.231216288 9.206912483 9.142737755 9.355437743 9.601330687 9.057769693 9.444100338 9.29148964 9.012234402 228615319 phoA Stress Phosphate limitation Bacillus cereus AH621 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 8.047638587 8.185225329 8.50171656 7.966668965 7.885030239 7.719946493 7.363141637 7.37552048 7.83930694 7.701023466 7.73586492 7.979785448 145236164 bphB Organic Remediation Aromatics Polycyclic aromatics Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8.908559369 8.706976273 8.280078336 8.044034665 8.053050278 8.157927054 8.516075521 7.818284606 8.84417797 8.344898306 8.286170734 8.050977566 224826717 iro virulence Lutiella nitroferrum 2002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Lutiella;species:Lutiella nitroferrum; 8.454742515 8.690931738 8.458179969 8.199011381 8.222433346 8.381056051 8.446694813 8.085851487 8.458465648 8.13710799 8.174911744 7.964240016 219722315 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Stenotrophomonas sp. SKA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 8.623921478 8.592228584 8.423537106 8.663961431 8.458177613 8.252988577 8.145600751 8.414900017 8.341909818 8.431100213 8.496535428 8.007848065 261374036 clpC Stress Protein stress Geobacillus sp. Y412MC61 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 9.152571147 9.266243265 9.247308959 8.833352153 8.860582091 8.636763188 8.752062523 9.043660641 8.811210229 9.047735474 8.937459494 9.050952379 77640940 alkH Organic Remediation Other Hydrocarbons Alkaliphilus metalliredigenes QYMF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus metalliredigens; 9.154593436 9.324700599 9.197498336 8.473796016 8.386709847 8.676843366 8.219576502 8.309939987 8.370118251 8.291826447 8.684955061 218250443 amyA Carbon cycling Carbon degradation Starch Mitsuokella multacida DSM 20544 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Mitsuokella;species:Mitsuokella multacida; 8.406746379 8.380723812 8.380100797 7.865412671 7.843447477 7.886328372 7.766808223 7.569287343 8.021092661 7.680676785 7.818229918 8.063653666 183174246 catB Organic Remediation Aromatics BTEX and related aromatics Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 9.826147577 9.928735057 10.12934606 9.159693407 9.832368865 9.765438363 9.529210703 10.16813091 9.86339935 9.927885375 9.694315702 41398796 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 9.483414807 9.53549065 9.407672952 9.43137647 9.517925532 9.425914766 9.649331762 9.540533161 9.49971866 9.649152781 9.606398434 9.11165764 39981995 hydrogenase Energy process Energy process Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 9.01396562 9.052740506 9.526517046 9.104415605 9.081824322 8.794794616 9.018521656 9.468881793 9.143047875 9.24397185 9.320256377 9.503561311 158346884 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas sp. LH128 8.229308937 8.153063934 8.073285598 8.003669547 7.892833337 7.92322965 8.161945665 8.307947735 8.055872477 7.796446456 8.027456208 23267183 endoglucanase Carbon cycling Carbon degradation Cellulose Aspergillus aculeatus superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 9.256113807 9.032957075 9.192870934 9.107485949 9.199379595 9.076272549 9.000810996 9.439218804 9.095600103 9.40015136 9.478017204 9.52172006 121998731 dsrB Sulphur sulfite reductase Halorhodospira halophila SL1 8.461718921 8.334780512 8.532748361 8.467764267 8.308951902 8.149132497 8.266751049 8.403265636 8.396402084 8.367720241 8.350760793 8.24576767 226833465 clpC Stress Protein stress Actinomyces urogenitalis DSM 15434 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces urogenitalis; 8.565258114 8.861355581 8.74785908 8.779843223 8.821842825 8.865093304 8.762713276 9.253583637 8.883484234 8.901948902 8.832157101 9.021305571 197784159 Catechol Organic Remediation Aromatics Other aromatics Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 9.57275129 9.584343257 9.453506411 9.479269017 9.370930664 9.046181638 9.191706645 9.4154904 9.357139609 9.425094978 9.377844562 9.629254703 119961669 NirB Nitrogen Assimilatory N reduction Arthrobacter aurescens TC1 8.332816317 8.63765047 8.549341395 8.379993016 8.688691983 8.892130063 8.819413224 8.875812725 8.80073919 8.886327708 8.857335154 8.61548858 50951013 obgE Stress Radiation stress Leifsonia xyli subsp. xyli str. CTCB07 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Leifsonia;species:Leifsonia xyli; 8.474546625 8.175618662 7.996608028 8.286245567 8.339298974 8.239844732 8.167130347 8.152146133 8.169156284 115375069 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 8.38877441 8.26850968 8.074865289 8.112836685 8.290958581 8.532742713 8.040301239 8.480213837 8.141839524 7.790754824 7.699754526 150957192 CadA Metal Resistance Cadmium Klebsiella pneumoniae subsp. pneumoniae MGH 78578 9.183415642 8.659575772 8.962302784 8.581475615 8.791264457 8.387093643 8.299247061 8.529463648 8.593118995 8.578764578 8.537495728 8.721120831 212684608 nrfA Nitrogen Dissimilatory N reduction Providencia alcalifaciens DSM 30120 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 9.501251084 9.288349988 9.462678871 8.895385292 8.343076787 8.553180053 8.470590872 8.677783755 8.475080682 8.66890714 8.826833915 9.024741344 76151977 CopA Metal Resistance Copper Enterococcus faecium superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus; 8.477238083 8.395438165 8.590463315 7.736344655 7.725434533 7.799932595 7.367390842 7.145478615 7.741077669 7.3858922 7.439544119 7.636778307 269304236 amyA Carbon cycling Carbon degradation Starch Xylanimonas cellulosilytica DSM 15894 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Xylanimonas;species:Xylanimonas cellulosilytica; 9.890146628 9.846160335 9.999615435 9.228314408 9.298766929 9.308345509 9.201224279 8.97068113 9.492010425 9.070948549 9.300700932 9.351729235 91200612 Mex Antibiotic resistance transporter Candidatus Kuenenia stuttgartiensis superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;genus:Candidatus Kuenenia; 9.056751953 9.22802014 9.359928744 8.974253358 8.643514843 8.658539604 8.346510117 8.336654416 8.313327218 8.40070099 8.885518412 182382460 narG Nitrogen Denitrification uncultured bacterium 10.30393067 10.0588848 10.31958563 9.839767487 9.772915997 9.624218656 9.803243319 9.810199223 10.26463847 10.14319485 10.15774091 10.10863428 209401912 narG Nitrogen Denitrification uncultured bacterium 9.561010723 9.845501829 9.781483693 9.454795042 9.359879359 9.307497508 9.236483027 9.662101263 9.116930691 9.475851064 9.502252768 9.439525861 218291273 ArsC Metal Resistance Arsenic Alicyclobacillus acidocaldarius LAA1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 8.626727662 8.701546148 8.451004834 8.573373353 8.773047564 8.659390863 8.398204491 9.113005733 8.265150939 8.894161455 8.914431286 8.813735968 255019611 sox Sulphur Sulphur oxidation Acidithiobacillus caldus ATCC 51756 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 7.499438747 7.269972149 6.965943245 7.35934439 7.839765682 7.703031776 7.289452411 7.177942908 262197754 pstB Stress Phosphate limitation Haliangium ochraceum DSM 14365 9.020502166 8.912705013 9.118773697 8.315605219 8.218017159 8.254170545 8.035233544 7.997277439 8.223338766 8.179798721 7.826592875 8.404255154 82402334 ZntA Metal Resistance Zinc Caldicellulosiruptor saccharolyticus DSM 8903 7.445733144 7.251744438 6.917411945 6.996008174 7.274163354 7.216258901 7.231254072 114806157 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Thermoanaerobacter ethanolicus X514 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Thermoanaerobacter; 8.737286165 8.889215302 8.840049999 8.252540238 8.218851545 8.040464652 8.101198837 7.970404593 8.253964685 8.072786156 8.096927728 8.474915978 115369390 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 8.351933948 8.476440431 7.659293041 7.51867811 8.118123333 8.341755784 7.740313321 8.17494834 7.867020276 7.590864888 8.075900515 126355810 4HBH Organic Remediation Aromatics BTEX and related aromatics Pseudomonas putida GB-1 8.424989983 8.456552612 8.399236974 8.415722988 8.427699152 8.529245221 8.379823983 8.713683121 8.384537716 8.477867279 8.709633975 8.558555433 146297956 CopA Metal Resistance Copper Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 8.440803907 8.537708766 8.443644626 8.485811762 8.666930622 8.758440596 8.380055002 9.238228669 8.232584721 8.600240629 9.016144128 8.627899858 45386223 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 8.35561565 8.2829095 8.442178518 8.673305529 8.628110982 8.647913692 8.801296943 8.810824439 8.885201921 8.857433337 8.23428712 148823642 obgE Stress Radiation stress Mycobacterium tuberculosis F11 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 8.237519756 8.168465092 8.167892986 8.145718426 7.642934167 7.965902963 8.441103952 8.406147391 8.244630739 8.282110912 169004165 ara Carbon cycling Carbon degradation Hemicellulose Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 8.584272445 8.516271727 7.657045575 8.180965451 8.204394151 8.713051859 7.472810916 8.715204895 8.607408848 269146367 sigma_70 Stress Sigma factors Neisseria cinerea ATCC 14685 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria cinerea; 8.091126774 8.106576588 8.324451335 7.413656655 7.502534099 7.706843939 7.538345862 7.319726861 7.715621348 7.513244529 7.971946997 7.556688453 207367125 mnp Carbon cycling Carbon degradation Lignin Lentinula edodes superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Lentinula; 8.303690783 8.133978441 8.153696582 8.146198301 8.042296904 7.755091906 7.818765852 8.187852036 8.099029004 8.117651019 7.747656492 7.787385661 222149093 pstC Stress Phosphate limitation Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 8.904408149 8.532033088 8.45005687 8.077662124 8.588017817 8.468424289 7.844864163 8.66395196 8.091576306 8.213656297 8.389309088 219540956 dmsA Organic Remediation Others Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 9.496612735 9.306065924 9.448652826 9.015718975 8.823954892 8.74247088 8.395399245 8.373613701 8.397630402 8.540933667 8.826196989 67925538 obgE Stress Radiation stress Crocosphaera watsonii WH 8501 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Crocosphaera;species:Crocosphaera watsonii; 8.892810464 8.915961682 8.733191242 8.324045503 8.363834052 7.628865409 7.736132282 7.361774936 8.116052573 8.153296326 8.283919472 39059 xylA Carbon cycling Carbon degradation Hemicellulose Arthrobacter sp. superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8.797029624 8.445442587 8.443342697 8.87326122 9.000620408 8.750660661 8.589487916 9.307638821 8.407009834 8.984861384 8.769466767 9.047378571 29829331 amyA Carbon cycling Carbon degradation Starch Streptomyces avermitilis MA-4680 8.865381552 8.701827069 8.598243804 8.377281558 8.444638328 8.06297955 8.23796369 8.210666931 8.286433651 8.280778869 8.668768729 52348913 pstC Stress Phosphate limitation Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 8.203486519 7.861343214 7.834272367 7.362883785 7.168527291 7.377812814 7.582292808 7.34651962 7.003103512 29827891 pimF Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 9.298643667 9.063158853 9.118362287 9.010444135 9.287684594 9.694213407 9.658968868 9.701267678 9.63938791 9.888663518 9.969967316 9.822090861 251782721 obgE Stress Radiation stress Streptococcus dysgalactiae subsp. equisimilis GGS_124 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus dysgalactiae; 8.19492484 8.473480238 8.557250533 7.91510996 7.842715017 7.827123027 7.609629709 7.251248741 7.958236601 8.005492652 7.849934102 33391483 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 10.21490983 10.12430171 10.24903445 9.560992797 9.539464195 9.289108295 9.43320156 9.705563508 9.276233312 9.738302835 9.638398085 9.802208774 158138854 narG Nitrogen Denitrification uncultured bacterium 10.26715976 10.20133373 10.16109968 9.257938301 9.096533253 8.851322085 196182333 mer Metal Resistance Mercury Microcoleus chthonoplastes PCC 7420 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus chthonoplastes; 9.202307047 9.155909704 9.386888257 8.732659059 8.320212338 8.204537619 8.328788644 8.391828425 8.30291588 220910059 clpC Stress Protein stress Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.390837079 8.778194078 8.282042303 8.043049058 9.065192018 9.137319591 8.979395055 9.128757571 8.820728515 211957798 sigma_32 Stress Sigma factors Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 8.380788603 8.352949069 7.6761232 7.640197418 8.021550102 8.27474138 7.766116776 8.331408323 7.869983311 7.558855829 7.855442115 127513499 pcc Carbon cycling Carbon fixation Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 8.389285985 8.337227235 7.941107446 8.13505342 8.162013518 8.316043604 8.642542382 8.242642166 8.533257 8.638579388 8.58764932 113731760 pcc Carbon cycling Carbon fixation Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.644674097 8.572433299 8.584820165 8.627805632 8.616861636 8.443438889 8.650342626 8.820680288 8.714660682 8.668735132 8.790325779 8.640617708 258648897 cydA Stress Oxygen limitation Prevotella tannerae ATCC 51259 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella tannerae; 10.05666175 9.461727778 9.527927662 9.588168206 9.376847389 9.37758174 9.463150216 9.609348292 9.306855516 9.60679262 9.711066887 9.540568537 77454729 ArsC Metal Resistance Arsenic Rhodococcus erythropolis PR4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 8.244741332 8.099050521 7.857211577 7.887746908 7.308553627 7.920896201 8.379379046 8.322931426 8.00856524 8.325959434 33391361 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.017502564 8.111991824 8.310220023 8.217432107 7.982819107 7.994488152 8.65765775 8.153595927 8.229628082 7.741767218 8.2148436 115492665 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 8.759565925 8.499213422 7.957638694 7.991270118 7.894302887 7.453688281 7.530393644 7.812854865 7.79600028 8.021302645 167656535 mer Metal Resistance Mercury Eubacterium siraeum DSM 15702 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium siraeum; 8.385528295 8.130135077 7.659148347 7.621155929 7.885684104 7.651312212 7.812447746 8.05258434 7.885663541 8.092292766 7.895982507 209517951 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.550801134 7.286513739 7.849074473 8.103586157 7.459357663 8.089119316 7.345135739 7.448991664 209520846 glnA Stress Nitrogen limitation Burkholderia sp. H160 8.324263612 8.783561111 8.545772207 8.504367756 8.573227294 8.310714923 8.44366102 8.758560136 8.709540319 8.686255352 8.635480232 8.583252928 84360199 ChrA Metal Resistance Chromium Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 8.64452119 8.905807008 8.283085371 8.91478708 8.703538261 8.55931149 8.979068755 8.992784631 8.637827023 8.707935935 8.606849946 8.73309856 261284027 endochitinase Carbon cycling Carbon degradation Chitin Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.272552587 8.055391387 111026276 phtA Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 9.386886898 9.251241091 9.48761297 8.500685105 8.479063545 8.489540258 8.582064299 8.458516549 8.391593223 8.527941047 8.400353397 8.911244424 88794859 pulA Carbon cycling Carbon degradation Starch Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 8.279656624 8.335745877 8.361285697 7.971759701 8.218314176 8.069223684 8.387982657 6.946835705 8.470289212 7.679207062 7.668676433 8.108941301 60100879 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.86702453 8.55761254 8.914856497 8.225784353 8.126063633 7.941444098 7.930441123 7.829946951 8.278016983 8.008687527 7.985910266 8.15765711 177841203 ChrA Metal Resistance Chromium Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 8.823468628 8.734976583 8.992892333 8.592420104 8.110567946 7.845998964 8.60403164 8.449315947 8.642005339 8.748885551 8.586182565 270154712 Ni_Fe_hydrogenase Energy process Energy process Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 8.090667264 8.441259788 8.573078586 7.769692227 7.240237762 7.500346804 7.68843494 7.180517558 7.271784339 7.493208047 7.689707886 77968887 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 9.775454749 9.773689528 9.44748212 9.440650221 9.91431696 10.23571895 9.816215118 9.81377841 9.526386234 9.575391255 9.49608531 39648685 alkK Organic Remediation Others Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.166472913 8.440355484 8.585960574 7.802627652 7.770783246 7.856723102 8.362711005 7.893553251 8.564945898 7.324183927 7.430831134 7.646708393 78696893 nhh Organic Remediation Aromatics Nitoaromatics Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.681506248 8.324012036 8.690164284 8.59352502 8.481084904 8.277176975 8.357334159 9.011470319 8.467952521 8.733375021 8.810810001 8.787996051 152146172 rubisco Carbon cycling Carbon fixation Beggiatoa sp. SS superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Beggiatoa; 9.036351313 8.813545667 8.777805041 8.118655005 7.86420604 8.112410401 8.050698449 7.759694495 8.409056211 7.59199782 7.817132559 8.106289201 228572591 pstB Stress Phosphate limitation Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 8.644687943 8.166553888 8.033831632 8.409560673 8.28427201 8.521468012 8.352979016 8.393378569 8.135574857 134134431 cbdA Organic Remediation Aromatics Chlorinated aromatics Burkholderia vietnamiensis G4 8.82960525 8.835713965 8.220516181 8.115024569 7.867877406 8.56043815 8.232789681 8.722983882 8.268481327 8.155490517 8.007064949 260597838 ara Carbon cycling Carbon degradation Hemicellulose Cronobacter turicensis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter; 9.060505672 9.071185457 8.742802774 8.786545947 9.245332703 9.366815234 9.561248869 9.238781672 9.099760905 9.061310608 9.169334683 8.763635652 119536197 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 9.79108355 9.750908578 9.676581879 9.204886681 9.378312864 9.158146886 9.286314848 9.473873241 9.123924125 9.511678462 9.391347382 9.566781545 164603771 pstB Stress Phosphate limitation Clostridium bartlettii DSM 16795 8.126975543 8.14201823 7.345569388 7.061103823 283786117 ppk Phosphorus Phosphorus utilization Citrobacter rodentium ICC168 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 8.344867403 8.086792021 8.111038807 8.291066533 8.050970377 8.004330027 7.533667512 8.014449372 8.072742171 7.939148557 7.921034244 7.651865475 220904098 proV Stress Osmotic stress Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 9.07848484 8.76805657 8.910223185 8.051933076 8.031130878 8.20020691 7.80897684 7.448780134 8.168184895 8.034612662 8.051714535 116696796 pstB Stress Phosphate limitation Syntrophobacter fumaroxidans MPOB 8.470993979 8.389160719 8.43039861 7.963340096 7.879235964 7.772507537 7.749624539 7.905358359 8.06717385 7.895502251 7.755061442 7.940863116 154160944 rubisco Carbon cycling Carbon fixation Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.237853869 8.523744022 8.722962776 8.605281468 8.640652666 8.346995607 8.551621157 9.170918228 8.65769929 9.033601081 8.739041029 9.048903047 189353245 chnB Organic Remediation Other Hydrocarbons Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 7.501842837 7.706718204 7.637526322 7.55162039 7.66274263 7.472016244 7.606017337 7.45641212 111147341 CDH Carbon cycling Carbon degradation Cellulose Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 8.526586371 8.603038979 8.511878861 8.49725201 8.600770123 8.459447052 8.743911676 8.486787078 8.912334496 9.038936703 8.048018935 145306102 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 9.272752388 8.848340456 8.815701874 8.500389587 8.716304814 8.730782936 8.300216109 8.350166397 8.633479567 8.454190059 8.626619508 8.443957615 159899537 CadA Metal Resistance Cadmium Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 8.533267201 8.634446216 7.87004856 7.558158244 7.883574469 7.605575098 7.841791946 7.891115447 7.898762215 8.154669856 91786893 vanA Carbon cycling Carbon degradation Others Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 8.486928566 8.110673656 7.421803531 7.359885005 7.516284624 7.720393624 7.453788504 8.217007214 7.420860251 7.631428836 7.46618729 256680807 mannanase Carbon cycling Carbon degradation Hemicellulose Streptomyces sp. SPB78 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 9.610221476 9.327634201 9.381890567 9.024866879 8.971041469 8.706335904 8.955553122 8.665237068 8.956692952 8.823101707 8.883779791 8.987104821 145214735 arsB Metal Resistance Arsenic Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.230014159 8.096974975 8.122244 7.750164568 7.923258312 7.978794206 8.128472101 8.108561288 8.437374204 8.152300488 8.357567557 8.108489126 3157614 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 9.081947048 8.963069863 9.035987703 8.641862782 8.685172333 8.711760997 8.561561822 8.756052251 8.744892511 8.651760991 8.705530018 8.699076124 89896222 ZntA Metal Resistance Zinc Desulfitobacterium hafniense Y51 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 8.132895041 7.967876517 8.132658771 7.689614419 7.658653069 7.245010946 7.559097492 254281664 oxyR Stress Oxygen stress gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.762498593 8.946524954 8.419535526 8.205309292 8.587403754 7.998689171 8.412788636 8.478972072 8.486700537 8.388154813 113937621 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 8.515994616 8.408923206 8.50681417 8.335713052 8.321036182 8.152821348 8.247813602 8.43604171 8.269889157 8.448093402 8.45706987 8.289582023 161318462 BMO Organic Remediation Other Hydrocarbons Pseudomonas butanovora superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 9.836627512 9.70543857 9.702628606 9.069929078 8.999830096 8.855119832 8.902173466 9.057868767 8.886092503 9.040800529 8.94407821 9.255582401 118036687 ArsC Metal Resistance Arsenic Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 9.490345884 8.895478765 8.278068611 9.595079311 9.404966727 9.377668293 9.351864078 9.235313495 8.86587425 9.154208974 9.045217906 8.801862738 209496496 fnr Stress Oxygen stress Arthrospira maxima CS-328 7.588228726 7.301180389 7.556259344 7.228875418 7.313151052 7.651810428 7.368464932 7.243465019 7.322895313 50083671 CorC Metal Resistance Cobalt Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 8.540011739 8.52668649 8.795684911 8.059640669 7.936029826 8.055787778 8.149422391 7.759105786 7.965159721 7.978279092 7.798053328 8.208306845 2660680 catechol_B Organic Remediation Aromatics Other aromatics Burkholderia cepacia superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.257403405 8.1644351 8.075033529 7.534786231 7.792362779 8.002733819 7.950653724 7.885036408 8.109044906 8.105052221 8.278108737 8.121651355 33866460 obgE Stress Radiation stress Synechococcus sp. WH 8102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.788729184 8.897799582 8.588567879 8.055019341 8.076635758 8.500921222 8.736973074 7.954026458 8.832150214 8.254783797 8.351634747 8.751836096 116196686 tfdA Organic Remediation Aromatics Chlorinated aromatics Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 9.974253507 10.08519913 10.03603424 9.574352204 9.605620605 9.459922071 9.825189999 9.637166744 9.56031846 9.723342352 9.858273228 9.622135883 115402249 pheA Organic Remediation Aromatics Other aromatics Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 9.336000926 8.803081965 8.594968753 9.093401227 8.655763171 8.468708805 9.181340188 9.078389306 8.962413724 8.715789212 8.681509561 218672727 Arylest Organic Remediation Aromatics Other aromatics Rhizobium etli GR56 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.770387559 8.954497999 9.012417367 8.194920103 8.18018614 8.379416088 8.757643525 8.291741638 9.042311448 8.487391104 8.287117911 8.535451227 52079231 amyA Carbon cycling Carbon degradation Starch Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 8.673448284 8.846893512 8.971366423 8.375955176 8.366917322 8.25673105 7.856730473 8.023972963 8.589137312 8.048703314 8.256671889 8.291906182 91779979 ChrA Metal Resistance Chromium Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.234172252 8.2840106 8.246097903 7.3977581 7.950471748 7.996241844 8.141522557 8.256165421 8.178170574 8.335775212 8.15245704 8.209109065 111223296 katE Stress Oxygen stress Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 8.620929505 8.746784302 8.782991445 9.392519741 9.46439177 9.314671931 9.090829999 9.81391732 8.731317006 9.395661401 9.458381714 238884474 sigma_70 Stress Sigma factors Selenomonas flueggei ATCC 43531 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas flueggei; 8.747108822 8.579942969 8.702111143 8.236492014 8.073380652 8.277748492 8.406105184 8.173635074 8.706985163 8.120377929 8.084907286 8.277804583 46400534 groEL Stress Heat shock Candidatus Protochlamydia amoebophila UWE25 superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Parachlamydiaceae;genus:Candidatus Protochlamydia;species:Candidatus Protochlamydia amoebophila; 8.373057761 8.504202148 7.764763844 7.764685444 7.550534457 7.590638549 7.990317981 145216739 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 9.257255805 9.239527409 9.486308626 8.791025535 8.592466815 8.501487819 8.561788137 8.225610096 8.490166673 8.40723852 8.563256719 8.757226531 258580684 pilin virulence pilin Vibrio mimicus VM603 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 7.264409289 7.462470602 7.447435812 7.454088166 7.347029634 209693646 gyrB other category gyrB Aliivibrio salmonicida LFI1238 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Aliivibrio salmonicida; 7.991531656 7.719305523 29828858 pimF Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 8.520907351 8.364350134 8.336949994 8.248049173 7.760214219 7.68991902 8.299196018 8.517162598 8.248737068 8.361977287 8.281949554 49237773 ppx Phosphorus Phosphorus utilization Bartonella henselae str. Houston-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella henselae; 8.07318262 8.111645377 7.591207638 7.512992242 7.299745282 7.219119495 7.355685348 1929906 endoglucanase Carbon cycling Carbon degradation Cellulose Macrophomina phaseolina superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Botryosphaeriales;family:Botryosphaeriaceae;genus:Macrophomina; 8.87365801 9.021091524 8.672685535 8.683212149 9.153623926 9.325901775 8.603925126 9.014653474 8.786085815 9.039909428 9.461020258 8.905312701 1066149 Xamo Organic Remediation Other Hydrocarbons Gordonia rubripertincta superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 8.741623061 8.644625237 8.457926154 9.030182282 8.746223979 8.638290864 8.885175094 8.794895188 8.458178276 8.468266885 8.684652093 8.354693191 93355795 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.341145842 8.404809275 7.865319078 7.565645437 7.87404291 7.666599341 7.611284643 7.376847395 7.527365465 259035426 glnA Stress Nitrogen limitation Granulicatella adiacens ATCC 49175 9.283182869 9.159641263 9.616285392 8.419813616 8.523010959 8.461193537 8.038425008 7.708591555 8.42741286 8.378269598 8.470997986 8.639259791 116230125 sigma_24 Stress Sigma factors Candidatus Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 8.577278239 8.272944618 8.433300569 7.381417431 7.601502767 7.558928292 7.250202795 222110809 ChrA Metal Resistance Chromium Diaphorobacter sp. TPSY superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax ebreus; 8.639258906 8.257646569 8.313184785 8.844242891 8.528408434 7.931135125 8.456745348 8.408108051 8.780105531 8.170004027 8.080870442 8.067679339 73659890 fnr Stress Oxygen stress Dehalococcoides sp. CBDB1 8.136379097 8.065101389 7.377780795 7.391473269 7.529971321 7.513126246 7.032944704 7.198083836 7.26692118 7.62118451 150395961 MFS_antibiotic Antibiotic resistance transporter Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 8.842656627 8.616114326 8.692673098 8.071069709 7.965813017 8.085740094 8.185101937 7.962265912 8.353832886 7.853306121 8.07256531 7.880849233 119954445 glnA Stress Nitrogen limitation Mycobacterium vanbaalenii PYR-1 8.777941053 8.880721129 9.057377583 7.986576183 8.225433644 8.4822026 9.21542555 8.645781324 8.959533898 8.443535494 8.536534359 8.403056497 87200476 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 8.545637292 8.566553194 8.746876093 8.916751982 8.727035792 8.392943919 8.917627512 9.011835433 8.493201096 8.675702016 8.389603617 8.40928951 219666197 dmsA Organic Remediation Others Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 9.213049784 9.179703594 9.207587314 8.499634099 8.463754343 8.334004252 7.995072851 8.027981401 8.545965524 8.045836451 8.004920829 8.373748321 259415922 pstB Stress Phosphate limitation Silicibacter sp. TrichCH4B 8.84975327 8.911990477 8.860085175 8.652868068 8.44108619 8.379937618 7.985399727 7.890202954 7.920143736 7.865948145 8.261970001 169832022 CopA Metal Resistance Copper Candidatus Desulforudis audaxviator MP104C superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Candidatus Desulforudis;species:Candidatus Desulforudis audaxviator; 8.762554189 8.595726375 8.735819923 8.072232146 8.115614803 8.088286432 7.985279838 8.039760385 8.281743541 8.095438375 7.792152629 8.190255852 192764344 narG Nitrogen Denitrification uncultured bacterium 8.037498254 8.23189046 7.98826946 7.966220494 7.86913474 7.792950262 8.305311671 8.085238245 8.129599858 8.083138234 8.304061479 34017210 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 8.632830086 8.659355056 8.742862029 8.194167204 7.948713573 7.923007559 7.438591855 7.375035212 7.646244326 7.475338107 7.899385679 8.31217367 170605600 nirS Nitrogen Denitrification uncultured bacterium 8.647873184 8.551631339 8.386750707 8.410027062 8.391386481 8.166415652 8.369194812 8.674513064 8.657752055 8.67545309 8.499307175 154149007 ahpC Stress Oxygen stress Campylobacter hominis ATCC BAA-381 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter hominis; 8.216273104 8.142906187 7.264599259 7.157494017 86747323 sigma_32 Stress Sigma factors Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.606686217 8.399087111 8.417552646 8.474712643 8.793719821 8.94051051 8.876518345 8.809767568 77546458 TerC Metal Resistance Tellurium Pelobacter carbinolicus DSM 2380 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter carbinolicus; 9.43090103 9.231184874 9.197255975 9.727956006 9.523825663 9.449190225 9.682076329 9.595144475 9.35095461 9.651867899 9.523727805 9.553052011 110931976 nifH Nitrogen Nitrogen fixation uncultured marine bacterium superkingdom:Bacteria; 8.61912713 8.366968208 8.643502581 7.827144273 7.871012942 7.86973715 7.728887917 7.514634705 8.090242981 7.837334117 7.799901577 7.957118991 23305823 phenol_oxidase Carbon cycling Carbon degradation Lignin Panorbis viscosus superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Microascales;family:Halosphaeriaceae;genus:Panorbis; 9.005527295 9.293209698 8.525951484 8.798801268 8.899897863 9.228783971 9.283812431 9.536839205 9.189431842 9.479475187 9.427127362 9.318739781 187940061 TerD Metal Resistance Tellurium Pseudomonas aeruginosa superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.27098841 8.202324143 7.857323848 8.048164845 7.821385551 7.615249332 7.619967966 7.983066089 7.328597322 7.64818785 7.708593721 77958371 CopA Metal Resistance Copper Yersinia bercovieri ATCC 43970 9.388975914 9.385586695 9.231717331 8.65031449 8.584039036 8.643148342 7.997167258 8.450052947 7.765443514 8.188025746 8.359615521 8.335446449 229209369 pstB Stress Phosphate limitation Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 8.874127771 8.707484715 9.053090691 8.811174236 8.703622032 8.542630889 8.726151556 9.199381146 8.83843907 9.068872753 8.911916698 9.188700876 94967556 sigma_24 Stress Sigma factors Candidatus Koribacter versatilis Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 8.280537295 8.114966163 8.494865021 8.086637517 8.031572708 7.859960683 7.977746946 8.44194806 8.351704998 8.241414167 8.015829153 8.086834141 190610518 non_contractile_major_tail_protein Bacteria phage STRUCTURAL Mycobacterium phage Jasper order:Caudovirales;family:Siphoviridae; 8.480511444 8.883413758 8.846812644 8.698770822 8.998292124 8.926019785 8.741706992 9.073249237 9.019539472 9.19070043 9.072064526 8.853321662 33593260 type_III_secretion virulence secretion Bordetella pertussis Tohama I superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella pertussis; 9.283124154 9.24876368 9.34086055 8.576014296 8.159971666 8.695642595 8.654611627 8.496155921 8.529855338 8.61715596 8.614763153 8.864378968 198261775 phoB Stress Phosphate limitation gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.89320628 8.592867732 8.970732416 8.30173538 8.20766355 8.17325913 8.278552612 8.009906621 8.553996222 8.095282161 8.070854249 8.22677696 219849157 cda Carbon cycling Carbon degradation Starch Chloroflexus aggregans DSM 9485 8.212436036 8.154201055 8.112437086 7.693548827 7.711306719 7.828155578 7.735333825 8.468888491 7.568874671 7.435535202 7.523716865 206684749 sigma_24 Stress Sigma factors Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 9.14836303 8.834519271 9.330391206 9.832325585 9.829405515 9.695007807 9.300992256 10.04022777 9.039724054 9.802421138 9.569429449 9.986576734 115391876 vanA Carbon cycling Carbon degradation Others Streptomyces sp. NL15-2K superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.299336472 8.829518452 8.309942296 8.10012708 7.621230518 8.685075881 8.887734489 8.430900957 8.546649024 8.281701291 8.443369163 8.323878805 1935037 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira;species:Nitrosospira multiformis; 10.49859373 10.47910127 10.49674943 9.947724287 10.03283299 10.02332042 9.889063993 9.637408908 10.06942754 10.1015448 10.24349781 10.25424281 73749235 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. CBDB1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 9.452560264 9.401808132 9.456300211 9.011813879 8.91005767 8.641632726 8.409934718 8.16658926 8.522604041 8.265623179 8.531946787 8.165444496 67774945 gyrB other category gyrB Chlorobium phaeobacteroides DSM 266 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 8.888555074 8.719069374 9.06077478 8.61045395 8.656199195 8.628077521 8.778081816 9.225170112 8.486708446 9.077981565 8.777059866 9.015021701 76803721 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 9.011676132 9.296457102 9.315602453 8.663090319 8.88486617 8.804028845 8.992407273 8.988414528 8.766290717 9.278739447 9.40041311 9.176105364 6855474 endoglucanase Carbon cycling Carbon degradation Cellulose Robillarda sp. Y-20 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;genus:Robillarda; 8.766936852 8.612014549 8.688553128 8.092479729 7.940370725 8.188001153 7.872220095 7.914982786 7.984892143 7.962449189 7.915424225 8.292457539 125555837 CadA Metal Resistance Cadmium Oryza sativa (indica cultivar-group) superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Streptophyta;class:Liliopsida;order:Poales;family:Poaceae;genus:Oryza;species:Oryza sativa; 9.824743346 9.773854912 9.893294532 9.849346789 9.836814225 9.625067573 9.827110144 9.949530136 10.13168276 10.15002968 10.02924819 10.08497028 90309734 pstB Stress Phosphate limitation Psychromonas sp. CNPT3 8.254168129 8.177819966 7.740568195 7.563449334 7.663208224 7.293170448 7.424823363 7.907301099 7.481556218 7.397029378 7.733364565 139003215 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.54031709 7.851166343 8.051843596 7.418165409 7.803277222 8.139630434 7.810862475 8.01183131 7.695748279 221233726 fnr Stress Oxygen stress Caulobacter crescentus NA1000 9.864442128 9.964773913 9.68575689 9.69886768 9.695075024 10.18979559 10.28600609 9.907018157 10.39404242 9.984562756 9.755495505 9.793198256 28869834 pheA Organic Remediation Aromatics Other aromatics Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 9.045307772 8.796925491 8.971088769 8.510770851 8.424513397 8.270166654 8.228923541 8.601679581 8.407565619 8.473335084 8.83611883 88596960 fnr Stress Oxygen stress Campylobacter jejuni subsp. jejuni 84-25 8.427247214 8.388799713 7.850218328 8.026489975 7.928334716 7.326769787 7.796856243 7.545921929 7.774940139 7.833648708 2251108 amyA Carbon cycling Carbon degradation Starch Pyrococcus sp. superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Pyrococcus; 8.401574751 8.619563243 8.636988824 8.363994858 8.233045859 8.369554703 8.298597021 8.317790423 8.369080886 8.15170996 8.165814473 8.352848786 84043047 pcaG Organic Remediation Aromatics Other aromatics uncultured bacterium 8.020491178 8.44587081 8.294869392 8.072051475 8.229000022 8.042829193 8.367887143 8.319560599 8.434378381 8.2257321 8.340932 8.156333423 242345598 single_strand_annealing_protein Bacteria phage REPLICATION Streptococcus phage M102 order:Caudovirales;family:Siphoviridae; 7.979573724 7.952343738 7.224319294 7.550793722 7.468708149 6.958211102 7.569579682 6.889501544 6.774563547 99030497 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 8.370948902 8.129408526 8.463068304 8.193233 8.403205287 7.587544152 8.232369283 8.021425553 8.204005735 8.209490661 7.684022414 260420543 pstB Stress Phosphate limitation Citreicella sp. SE45 8.575127187 8.804857176 8.883199731 8.772810073 8.772349387 8.583599939 8.814946172 9.220565618 9.027904152 9.191780047 8.901338575 9.03819185 169793418 narG Nitrogen Denitrification uncultured bacterium 8.870291303 8.443236985 8.745177241 8.481615643 8.072661928 8.464821022 8.279717462 8.0832674 8.429699372 8.214173078 146337577 obgE Stress Radiation stress Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 9.072113689 9.250180102 8.994070763 8.404336354 8.122936218 8.946953702 9.01876669 8.755504406 9.108716323 8.504152278 8.775108532 8.647559432 237691747 sox Sulphur Sulphur oxidation Sulfurihydrogenibium yellowstonense SS-5 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Hydrogenothermaceae;genus:Sulfurihydrogenibium;species:Sulfurihydrogenibium yellowstonense; 9.32061997 9.341798375 9.502339507 8.734742208 8.378193229 8.554613395 8.325919948 8.210226216 8.442375031 8.507711645 8.565455922 8.85012361 71557669 phn Organic Remediation Herbicides related compound Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 9.061857575 9.155838354 9.109486862 8.428622244 8.778825018 8.870487096 9.437762695 8.438506202 9.393655417 8.638858096 8.528291447 8.74767129 126249765 narI Stress Oxygen limitation Pyrobaculum calidifontis JCM 11548 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum calidifontis; 8.16699974 8.452033972 8.324655668 8.181790631 8.008903878 8.126980356 8.578702747 8.275243366 8.353428231 8.374783131 8.615761959 76164999 amyA Carbon cycling Carbon degradation Starch Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 8.301768191 7.948962358 8.165264795 8.264810532 7.909170727 8.222789178 7.91771949 8.249189048 7.886487719 8.004683092 7.910296127 26278872 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.610562639 8.435447646 8.429507475 8.324004205 8.117947627 7.991360633 8.147908027 7.770828245 8.215346688 7.987767423 7.824295131 7.899212553 115367290 sigma_24 Stress Sigma factors Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 8.496155216 8.451326989 8.702666373 7.892063339 7.664492478 7.791978475 7.806847636 7.422786376 8.084690038 7.773972809 7.825829028 7.903909467 91684750 phn Organic Remediation Herbicides related compound Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.740796326 8.640160047 8.353727429 8.461329295 8.476055261 8.510981649 8.355817764 8.602508171 8.332176816 8.589292746 8.823846468 8.48861172 84786990 phoB Stress Phosphate limitation Erythrobacter litoralis HTCC2594 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 8.323334334 8.294305508 8.443351584 8.26753254 8.075583483 7.805729596 7.721158616 7.996593297 8.264473293 7.930141428 7.940466709 7.768212995 57434414 nagG Organic Remediation Aromatics Aromatic carboxylic acid Escherichia coli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 8.145523309 8.105434966 8.118940699 8.307285034 8.217784835 8.079371327 8.356394132 8.215722327 8.361863709 8.32206712 118746585 Arylest Organic Remediation Aromatics Other aromatics Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 8.525670801 8.474517324 8.778700963 8.119849884 7.958119609 8.014004989 7.885328499 7.832417454 7.868610793 7.897778093 7.815616673 8.106288858 156044142 nitA Organic Remediation Aromatics Other aromatics Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 9.02099843 9.138994029 9.151802896 8.117036518 7.557485781 7.943556602 7.547330627 7.453838272 7.571353569 7.591541793 8.334997045 38426998 narG Nitrogen Denitrification uncultured bacterium 8.316433653 8.2853448 8.455375743 8.301830956 8.22982148 7.996778485 8.367829471 8.20469349 8.514355737 8.109665335 8.169961004 8.297018435 83368857 nasA Nitrogen Assimilatory N reduction Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 8.325899737 8.334359649 7.554963205 7.987780893 8.067550782 7.861588748 8.348912755 8.341555077 8.104622049 8.125037715 197118324 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 8.821708789 8.829985563 8.917961103 8.329805312 8.32114149 8.423918099 8.456227176 8.937448559 46201361 pstB Stress Phosphate limitation Magnetospirillum magnetotacticum MS-1 8.652000851 8.674019258 8.617741218 8.082213021 7.600308038 7.845725011 7.61516252 7.677629153 8.181348118 8.066571886 8.044225554 8.132572508 108757552 merP Metal Resistance Mercury Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 9.673052096 9.729839617 9.510175554 9.646863224 9.411345924 9.522590588 9.709955366 9.555267175 9.958362237 9.230388519 9.080262708 9.267159812 224472732 phenol_oxidase Carbon cycling Carbon degradation Lignin Laccaria bicolor superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria; 8.338203936 8.212388917 7.999072081 7.667364265 7.789138438 8.295641772 8.411650581 8.257132312 8.016692148 8.10988438 283783654 srt virulence surface protein Gardnerella vaginalis 409-05 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Gardnerella;species:Gardnerella vaginalis; 9.583882944 9.870904099 9.667752759 9.575248806 8.899664581 9.249293923 9.739770348 9.348428994 9.462437789 8.854474796 9.057883503 8.956168108 61653252 BchY other category chlorophyllide reductase uncultured proteobacterium DelRiverFos06H03 superkingdom:Bacteria;phylum:Proteobacteria; 9.359236554 9.183874988 9.124286711 8.964214977 9.039344583 8.929963158 119898711 nagI Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 9.645099373 9.602702182 9.699064956 10.04514773 10.13723223 10.09544983 9.736594922 10.18214899 9.519008963 10.04090958 10.08665228 9.383914952 151581361 gyrB other category gyrB Opitutaceae bacterium TAV2 8.159316309 8.308382793 8.438735277 8.641273102 8.232458791 8.258631654 8.666096686 8.509986803 8.558113412 8.313349268 8.648157197 110819318 xylC Organic Remediation Aromatics BTEX and related aromatics Rhodococcus sp. RHA1 8.618720642 8.316570711 8.544207662 8.363668421 8.261499098 8.188648281 8.413025319 8.342231657 8.374128945 8.210148458 8.416191834 8.006806437 237746575 pstC Stress Phosphate limitation Oxalobacter formigenes HOxBLS superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Oxalobacter;species:Oxalobacter formigenes; 10.07201388 9.901654996 9.686748677 9.566471218 9.450900682 9.253669078 9.230567594 9.541101901 9.224685801 9.504580486 9.595529485 9.519077938 89895235 pimF Organic Remediation Aromatics Aromatic carboxylic acid Desulfitobacterium hafniense Y51 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 8.376180879 8.459325678 7.461672673 7.682064748 7.827673998 7.387020611 7.126820453 7.777180729 7.541329416 7.464089091 7.661025012 219670400 Ni_Fe_hydrogenase Energy process Energy process Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 8.260419013 8.065982324 8.334968996 8.246820393 8.163198498 8.01859668 7.716278184 8.317520534 8.240853058 8.323385638 7.944305928 8.116123533 227848076 AceA Carbon cycling Carbon degradation others Halogeometricum borinquense DSM 11551 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halogeometricum;species:Halogeometricum borinquense; 8.631457629 8.926929649 8.666679433 7.986846729 8.1318318 8.261278799 7.771867532 8.501824989 8.33450022 7.942793351 8.322760645 134035522 SMR_antibiotics Antibiotic resistance transporter Pseudomonas aeruginosa superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 9.232821882 9.025738448 9.380329307 8.324785641 8.418411228 8.140077274 8.191509914 8.888727904 8.794492575 8.799567732 8.907919908 8.787203768 157679018 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.61306223 8.716631437 8.808478227 8.408780434 8.359983007 8.24417171 8.135392404 8.377328572 8.256557134 8.341205626 8.352747538 8.685012171 257140770 glnA Stress Nitrogen limitation Burkholderia thailandensis E264 9.123446352 8.911088642 8.739307541 8.710064001 8.787134595 8.67178145 8.421133366 8.892510066 8.472444404 8.892419184 8.878354551 8.971904816 116069774 cap virulence capsule Synechococcus sp. RS9916 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.263110016 8.323589816 8.374493352 8.015277769 8.088811323 7.852927564 7.999676082 8.153097356 8.35883872 7.894092471 8.070334271 7.900904422 117647679 gyrB other category gyrB Acidothermus cellulolyticus 11B 8.719238559 8.269098672 8.367283821 7.970113742 7.904531066 8.011578618 7.871855965 8.11191552 7.974862643 8.17443133 119955673 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.119547895 8.458712191 8.42198661 8.043612363 8.34987078 8.095016756 8.102205568 8.468178761 8.104390051 54025223 tfdA Organic Remediation Aromatics Chlorinated aromatics Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 8.956774517 8.695634274 8.471833962 8.106200457 8.199995094 8.836955296 8.433343041 8.502769719 7.791839906 8.226740598 7.895190443 218750936 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 9.745125051 9.714843503 9.573131604 9.355831242 9.290532838 9.202124703 9.397403714 9.281469856 9.618333156 9.240632294 9.380127762 9.313255998 108761906 sigma_24 Stress Sigma factors Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 8.078889881 8.367725623 8.072256953 8.048779796 8.326833157 8.518682802 8.352425653 8.647783528 8.467765263 8.753973949 8.684175787 8.416502268 227875345 glnA Stress Nitrogen limitation Mobiluncus mulieris ATCC 35243 8.528430592 8.653348794 8.673885251 7.967397836 7.791271013 7.97047944 7.595052673 7.566143016 8.088755358 7.535533552 7.695046959 7.897587201 213927913 PobA Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas syringae pv. tomato T1 8.691531377 8.489457152 8.721622213 8.996659185 8.997834279 8.906774985 8.814148688 9.220377132 8.603261749 8.872945452 8.752134496 8.846317031 188030024 pap virulence adhesin Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 9.335551704 9.146458229 9.434018394 8.571566247 8.565270416 8.475768047 8.195362238 8.06986486 8.107888226 8.583656484 8.452942314 8.880738458 170144434 xylA Carbon cycling Carbon degradation Hemicellulose Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 8.967843678 9.05824256 9.136555415 9.238590041 9.370507825 9.28256992 9.254964908 9.419490438 8.926689144 9.195094184 9.111732862 8.902944852 151939311 MFS_antibiotic Antibiotic resistance transporter Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.819000424 8.663550675 9.180118047 8.346849786 8.007691113 7.912485241 8.003959533 7.920478005 8.392094492 7.62662482 8.090879333 8.536240993 157084076 Arylest Organic Remediation Aromatics Other aromatics Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 8.552710762 8.694259788 8.309124666 8.032680284 8.179907786 8.640326139 8.492608258 8.252928515 7.653846448 7.881456542 7.848392145 163954398 mer Metal Resistance Mercury uncultured bacterium superkingdom:Bacteria; 8.707578218 8.688942074 8.739300931 8.084903087 8.078986519 7.983893495 8.425337615 7.888588632 8.066971927 7.948134394 8.178186435 222525490 hrcA Stress Heat shock Chloroflexus sp. Y-400-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus; 8.267639788 8.098978672 8.04981516 7.92689886 7.798291384 7.74295589 8.249989492 8.154443318 7.948425262 8.132659137 120612720 pimF Organic Remediation Aromatics Aromatic carboxylic acid Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 8.691120092 8.601177027 8.462223448 8.542852973 8.557573947 8.528017057 8.058974945 8.419080971 8.294580113 8.210956333 8.287227143 8.609194118 42410321 cydA Stress Oxygen limitation Wolbachia endosymbiont of Drosophila melanogaster superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales;family:Rickettsiaceae;genus:Wolbachia; 8.50161532 8.341650146 8.776940145 8.078885151 7.917797234 7.923620904 7.749861873 7.85347008 8.120519682 7.775281327 7.965986305 133913367 Tet Antibiotic resistance other Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 8.668953937 8.787601068 8.687155141 8.438605947 8.526792784 8.560571309 8.383099781 8.738318731 8.456067633 8.63822492 8.714780987 8.325837984 32345334 mcrA Carbon cycling Methane Methane production uncultured Methanosarcinaceae archaeon superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae; 8.974582762 8.970981063 8.644142179 8.344808072 8.791463989 8.869250497 9.086869372 7.836008171 9.060678994 8.320126291 8.401240894 8.251551771 228570108 AceB Carbon cycling Carbon degradation others Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 9.135550571 8.837005409 8.818140946 8.809647799 8.830124015 8.599589323 8.573552847 8.888614392 8.783608686 8.837255959 8.859887948 8.845008633 209401880 narG Nitrogen Denitrification uncultured bacterium 8.224792138 8.232806908 8.218757598 7.596261668 7.604038618 7.622170348 7.496273661 7.332172382 7.726496516 7.599275335 7.624466225 218356240 katE Stress Oxygen stress Escherichia fergusonii ATCC 35469 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia fergusonii; 10.47926282 10.10775059 10.17994984 9.776180111 9.583412903 9.299196381 9.896652341 9.83568551 9.887045193 9.824059372 9.784010859 9.725901526 224608384 pstB Stress Phosphate limitation Natrialba magadii ATCC 43099 8.278830219 8.233610226 8.532894551 8.102159096 8.107352102 7.77831246 8.080420144 8.412181241 8.298659499 8.26928466 8.183308825 8.191460096 219676993 pmdAB Organic Remediation Aromatics Others gamma proteobacterium NOR5-3 8.795924869 8.409054952 8.896560038 7.819082277 7.720274274 8.223634954 8.137788024 7.538096393 8.387240043 8.379889004 8.557051626 238028171 SMR_antibiotics Antibiotic resistance transporter Burkholderia glumae BGR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia glumae; 8.605241068 8.50364071 8.396280867 7.662902499 7.326962199 7.343042501 7.616123578 7.358105768 8.178311635 7.727919345 7.791876901 7.757931324 126709599 CadA Metal Resistance Cadmium Sagittula stellata E-37 9.122726975 8.999064225 9.104253814 8.590307047 8.660499491 8.753234223 9.086785585 8.745771204 9.190789961 8.52239524 8.551910335 8.501717328 170654302 fnr Stress Oxygen stress Methylobacterium radiotolerans JCM 2831 9.440367881 9.021083372 9.230574074 8.874965509 8.778529704 8.638431692 8.559200651 8.910256678 8.721311832 8.849139149 8.85342534 9.183010084 84665608 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.602431841 8.623197856 8.692354631 8.314011123 8.239464245 8.170145795 7.955837615 8.169426339 8.370705338 8.369662679 8.284562965 8.121808848 6458244 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Deinococcus radiodurans R1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 9.738933647 9.584215421 9.633982019 9.074605691 9.029775547 8.758483231 9.126769217 9.546635576 9.026988367 9.444689588 9.619593552 9.457210056 113898241 CopA Metal Resistance Copper Herpetosiphon aurantiacus ATCC 23779 8.078816431 8.288952041 8.499325959 7.949093253 7.932310651 7.873945463 7.529054486 7.845898757 7.91901569 8.051170886 7.729652097 7.959300199 124261619 exaA Organic Remediation Chlorinated solvents Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 8.422363127 8.412860733 8.242662617 7.850296743 8.018264781 7.742647514 7.64738898 8.146461359 8.275653353 8.254777583 8.128528533 8.092899345 172072011 TerC Metal Resistance Tellurium Micrococcus luteus NCTC 2665 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus;species:Micrococcus luteus; 8.620609153 8.894418263 8.754687082 8.487610878 8.177298014 8.419711349 8.345856491 8.08129813 8.450052636 8.27809113 8.380294818 8.496896025 118424457 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 8.769759086 8.778279952 8.758054499 8.551589514 8.478989581 8.348049037 8.484064998 8.400249012 8.530961061 8.508846436 8.533068824 8.439921336 94553907 pcaG Organic Remediation Aromatics Other aromatics Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 9.524889582 8.854965585 9.63785776 9.034370008 8.726254732 9.314929596 9.456590811 9.340329568 9.034938075 8.977190679 8.785717262 161019211 bphB Organic Remediation Aromatics Polycyclic aromatics Dyella ginsengisoli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Dyella; 8.215760927 7.993821839 8.141453848 7.326835946 7.30349181 7.717253182 7.606581307 7.380529758 7.803446906 7.330678317 7.503535647 7.498954292 118466291 glnA Stress Nitrogen limitation Mycobacterium avium 104 9.499599958 9.591889265 9.512269891 8.840183585 9.24822289 9.173004937 9.567236097 8.464206948 9.511297372 8.868758356 9.105126786 8.923092893 198281891 phenol_oxidase Carbon cycling Carbon degradation Lignin Pleurotus ostreatus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pleurotaceae;genus:Pleurotus; 9.3151319 9.106121923 9.244187695 8.210977173 8.482231264 8.462006551 8.39616399 8.28578219 8.447599329 8.433929658 8.294838323 8.721946247 126438261 CopA Metal Resistance Copper Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.522895514 8.124717592 8.444523275 7.981566259 7.930942479 8.093232377 7.944402472 7.98113573 7.848383358 8.079959471 7.734762285 28897343 phoB Stress Phosphate limitation Vibrio parahaemolyticus RIMD 2210633 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.806662075 7.657483666 7.586548189 7.451116286 7.183191874 7.406285735 7.285833961 7.46745149 7.488607341 47571847 ZntA Metal Resistance Zinc Rubrivivax gelatinosus PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 9.480906001 9.364008971 9.677660355 9.616143639 9.547834679 9.023285634 9.544544207 9.909402683 9.399950866 9.753049032 9.318300673 9.736401148 30267733 nmoA Organic Remediation Aromatics Nitoaromatics Streptomyces hygroscopicus subsp. yingchengensis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces hygroscopicus; 7.884516245 7.956284608 7.696334274 7.69561564 7.890646894 8.036311634 8.173333369 7.945875323 7.999804685 154351876 aclB Carbon cycling Carbon fixation Bacillus amyloliquefaciens FZB42 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 8.673610351 8.958108615 8.79674585 8.244922958 7.728017674 7.950491395 7.779404849 7.877312714 7.893068072 7.988171905 7.938424463 7.971641479 116812179 nifH Nitrogen Nitrogen fixation Clostridium sp. Sukashi-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 8.24366763 8.219575514 8.261324794 7.773224536 7.679737883 7.736712309 7.528219628 7.375761508 8.023164825 7.625396684 7.605165158 7.763774955 114191233 cellobiase Carbon cycling Carbon degradation Cellulose Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 8.244648021 8.182635062 8.569408145 8.228494079 7.897280418 8.283283205 8.280296345 8.218249248 8.234723374 8.162663117 8.087747959 121611344 atzC Organic Remediation Herbicides related compound Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 9.143559115 8.867976227 9.271057573 8.578906075 8.450650118 8.410478424 8.990281469 8.614751434 9.086017613 8.613317035 8.948727155 8.602590436 83574482 B_lactamase_A Antibiotic resistance Beta-lactamases Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 8.453068641 8.29730692 8.48423034 8.018189549 8.045751205 7.860379849 7.818121062 8.009928073 8.129609406 7.865210785 7.848555195 8.003632468 114327621 glnA Stress Nitrogen limitation Granulibacter bethesdensis CGDNIH1 8.389734544 8.495760987 8.223858892 8.062304234 7.805434768 8.053152113 8.184869042 7.860679624 8.470222021 7.955645345 7.960193143 7.925836729 118029783 ChrA Metal Resistance Chromium Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 9.601692336 9.13133111 9.104226298 9.169687732 9.056643253 8.777051143 9.456825922 9.351944271 8.888738837 9.2201921 8.95109618 9.153102534 147886094 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 8.162788477 8.316880324 8.389930181 8.363504653 8.233719264 8.093452959 8.261928988 8.383371484 8.346195973 8.459573542 8.149600756 8.067966497 153855431 nifH Nitrogen Nitrogen fixation Dorea longicatena DSM 13814 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Dorea;species:Dorea longicatena; 7.84529988 7.3026815 7.102513667 6.873550971 6.745867428 7.297899933 7.049295726 7.348383334 260607879 pstC Stress Phosphate limitation Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 8.52520094 8.649425803 9.005121094 8.2310652 8.012645787 7.864212565 8.164646789 8.639597069 8.233066731 8.502838113 8.356739707 8.532316364 118467908 CadA Metal Resistance Cadmium Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.5878175 8.439676683 8.467941893 8.395010968 8.002229645 8.087863111 8.257594913 8.523416603 8.416085903 8.609939048 8.334263637 8.590948385 219563104 nahA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 8.368753118 8.342986079 8.317434715 8.045435534 7.803528338 7.709834104 7.812154866 7.753663638 8.43410737 7.713763943 7.666711997 7.977762301 229738934 B_lactamase_C Antibiotic resistance Beta-lactamases Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 8.574322128 8.343548863 8.361507433 8.584567211 8.718490906 8.634018135 8.424701856 8.683317514 8.506655026 8.638267933 8.585433166 14192843 bphA Organic Remediation Aromatics Polycyclic aromatics Porphyrobacter sanguineus 9.08138132 9.068757775 9.116148533 9.159627592 9.349671304 9.268101024 8.759716536 9.200475012 8.754765524 8.967710862 8.979823666 9.251197768 91801739 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 10.55082271 10.63748454 10.58025841 10.22332132 10.18286303 9.833738579 10.0619648 9.849379946 10.38739355 10.16285412 10.24773088 10.2873885 209960678 linC Organic Remediation Pesticides related compound Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 9.121377273 8.832731894 9.197285228 8.54542763 8.466160033 8.340116831 8.504144893 8.578047039 8.590405647 8.651723494 8.591426305 8.73358759 49241056 CadA Metal Resistance Cadmium Staphylococcus aureus subsp. aureus MRSA252 8.337287529 8.004122702 8.315478554 7.564126107 7.401445945 7.670601972 7.231315696 7.082163648 7.572503377 7.647037424 260063216 sigma_24 Stress Sigma factors Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 8.144813182 8.509921861 8.551440151 7.757061028 8.117118248 8.237875302 8.187738101 8.406652928 8.10619095 8.454821789 8.366778995 7.922093809 111222714 CDH Carbon cycling Carbon degradation Cellulose Frankia alni ACN14a 8.481068271 8.571553809 8.590348305 8.800698641 8.695408687 8.744927886 8.541562184 9.007579599 8.675981536 8.795939975 8.825109087 8.822575252 49530589 benAB Organic Remediation Aromatics Aromatic carboxylic acid Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 8.331258065 8.462257975 8.311676292 7.903917184 8.115305337 8.185239956 7.781182315 8.092649049 7.945778181 8.125280766 8.270741712 8.191601043 158954866 gyrB other category gyrB Spiroplasma mirum superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Entomoplasmatales;family:Spiroplasmataceae;genus:Spiroplasma; 9.764162549 9.618279779 9.846895969 9.242361766 9.045002222 8.899503269 8.848819752 8.793733284 8.617091346 8.720900618 8.762153541 9.143898783 20906551 pstA Stress Phosphate limitation Methanosarcina mazei Go1 8.771747369 8.629292747 8.760693108 8.037277878 7.997330855 7.974471952 7.669381975 7.333380231 7.852726813 7.885609791 7.873867913 7.960407795 272529899 MFS_antibiotic Antibiotic resistance transporter Burkholderia sp. CCGE1002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.337448222 8.932716737 8.713035639 8.209150419 8.352668811 8.02832106 8.216390078 8.305971605 8.133690454 8.499775494 8.488227308 8.089474252 55772535 mer Metal Resistance Mercury Thermus thermophilus HB8 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 9.85846184 9.730566785 9.731956206 8.953700934 9.061776933 9.064449965 9.15432567 8.732837406 9.028509455 8.753417162 8.668468704 9.106441095 76057573 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.160640079 9.016677145 8.984263047 9.257243077 9.371402368 9.245882138 8.853741605 9.605461933 8.73107321 9.244438323 9.339382945 8.972384571 221155441 clpC Stress Protein stress Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 8.288835868 8.399945815 8.154389069 8.221042231 7.958699484 8.261789092 8.107595654 8.003883523 8.039563321 8.201284 8.087253541 149914942 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 9.210471598 8.77144718 8.907088815 8.53581 8.235773869 8.183539102 8.11369825 7.872669386 8.466395307 8.162833183 8.066040655 8.424371247 158523640 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 9.857864938 9.687166819 9.491615478 8.633078422 9.308462985 9.732809719 8.580802076 9.6472751 8.784333301 9.123269028 8.933525885 78062032 catechol_B Organic Remediation Aromatics Other aromatics Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 9.007565002 8.99101546 9.168026916 8.489952721 8.472061624 8.518277222 8.065709435 8.179623443 8.294188452 8.384484711 8.436018264 8.52386937 198265467 alkK Organic Remediation Others Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 7.988615809 7.931176524 7.233450294 6.70822654 177843451 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 9.140016153 9.306428096 9.150485636 8.68830951 8.715579389 8.66552789 229512091 iro virulence Vibrio cholerae B33 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 8.769719207 8.800947534 8.952611968 8.649702165 8.625076903 8.368355946 8.197214457 8.488138037 8.314275774 8.65584545 8.557367709 8.803113731 69301315 FTHFS Carbon cycling Acetogenesis Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 9.123747726 9.327619171 8.679069827 8.790313532 8.334327642 8.681000223 9.113958662 8.669470996 8.760805404 8.188154885 8.344043214 8.325908971 256759871 obgE Stress Radiation stress Thiomonas intermedia K12 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas;species:Thiomonas intermedia; 9.07537664 9.072927279 8.985653087 8.694164991 8.902734342 8.852576765 8.537380358 8.893840696 8.846552275 9.2218318 9.451597839 8.796584626 109897432 katE Stress Oxygen stress Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 9.162940088 8.287077037 8.629747054 8.715257668 8.73785018 8.855241861 8.920015947 8.695361312 8.647956893 8.586864317 8.44526174 157371790 MFS_antibiotic Antibiotic resistance transporter Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 10.11909113 10.18884213 10.02530872 9.397631163 9.872273909 9.734450287 9.510757299 10.02798981 10.03495908 9.980179414 10.04778415 9.81860875 118435650 sox Sulphur Sulphur oxidation Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 8.198297495 7.99823649 7.844816783 7.670732026 7.849782674 7.961788274 7.737871525 7.912761264 7.750731781 7.702854539 7.415287285 227881421 pstC Stress Phosphate limitation Halogeometricum borinquense DSM 11551 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halogeometricum;species:Halogeometricum borinquense; 9.061614822 9.055280332 8.622136845 8.382386727 8.209630868 8.351305646 7.817477692 8.31023971 8.060264337 8.207683555 8.413329592 8.78312763 89349944 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.631478781 9.154371024 8.471997952 8.098662073 8.277705171 8.901245666 9.167300217 8.563779543 9.161855656 8.709895204 8.807231566 8.888028205 222454331 CopA Metal Resistance Copper Halorubrum lacusprofundi ATCC 49239 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 9.510887642 9.679208237 9.594979165 8.719682229 7.543405489 8.6821581 8.936736123 133778504 endochitinase Carbon cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 9.407933183 9.206311557 9.355953686 9.293724114 9.313245028 9.145852851 9.228464426 9.585156038 9.418090246 9.461432206 9.406495419 9.563669255 281416307 scaffold Bacteria phage STRUCTURAL Klebsiella phage KP32 order:Caudovirales;family:Podoviridae;genus:T7-like viruses; 9.206389719 9.043510623 9.285214427 8.273902958 8.351754264 8.527656482 8.572312681 8.480077111 8.733582731 8.307316707 8.510443579 8.742298662 169189614 CopA Metal Resistance Copper Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 8.567588122 8.209997502 8.429183219 8.245009061 8.059765048 7.933589124 7.682882305 7.666402896 7.96805431 7.664398475 7.806932417 7.936860563 121595492 pilin virulence pilin Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 9.124487901 9.067649849 9.223731726 8.491472986 8.125075478 8.277803411 116492239 pstB Stress Phosphate limitation Pediococcus pentosaceus ATCC 25745 8.428231515 8.283839962 8.737992843 8.730995188 8.465723578 8.772419547 8.754145564 8.471375281 8.589015583 8.775607034 8.475050556 83631229 ppx Phosphorus Phosphorus utilization Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 8.521960865 8.476250395 8.454322154 8.322873603 8.147796524 8.026105091 7.513288933 7.656309468 7.951601363 8.023620215 7.973803211 8.138706732 34482642 obgE Stress Radiation stress Wolinella succinogenes superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Wolinella; 9.072802475 9.160919881 9.246867635 8.56768867 8.350422774 8.412433173 8.23811478 8.343776819 8.492332738 8.343830491 8.407284882 8.657520541 240103762 proV Stress Osmotic stress Thermococcus gammatolerans EJ3 9.39411373 9.276793611 9.380405865 8.892133485 8.586792753 8.670246929 8.674263678 8.805548287 9.052331262 8.934723744 115399840 tfdA Organic Remediation Aromatics Chlorinated aromatics Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 8.241854815 8.227129454 7.859228702 7.790465953 7.835924944 7.761565616 7.759105786 8.110513832 7.725402431 8.203270782 218750968 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 9.179024043 9.249166709 9.169407229 8.772156094 8.37699117 8.782500314 8.983240105 8.284227192 8.776454844 8.663186609 8.644758829 8.838622897 149912578 pstB Stress Phosphate limitation Roseobacter sp. AzwK-3b 7.29487549 7.192201679 6.889542451 6.826199102 7.3642284 7.279585711 7.065419487 7.11496034 169244303 Catechol Organic Remediation Aromatics Other aromatics Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 9.427288017 9.193527338 9.311614598 9.160870896 9.021633095 8.879851419 134300814 CadA Metal Resistance Cadmium Desulfotomaculum reducens MI-1 9.658588555 9.571647278 9.58634491 9.349192363 9.328465769 9.056206092 89345900 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 8.08683777 8.184537696 7.617532836 7.483408973 7.780492746 7.673351517 8.057961784 7.374792177 7.430042767 7.58135055 270328931 iro virulence Acidovorax avenae subsp. avenae ATCC 19860 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax avenae; 9.079722723 9.151992284 8.905299739 8.662683425 8.621944682 8.503103583 8.777767313 8.921803558 8.672674282 8.721582628 8.707301697 8.952023344 110284881 glnA Stress Nitrogen limitation Mesorhizobium sp. BNC1 8.754683874 8.531760097 8.670175563 8.574111807 8.366050367 8.245386539 8.253394804 8.171184026 8.343465024 8.09315787 8.093778972 8.27604156 151939916 amyA Carbon cycling Carbon degradation Starch Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.742045624 8.321122705 8.717650421 7.785344414 7.624773432 7.809920146 7.294189577 7.424159268 7.737145747 7.64107532 7.553643542 7.986157847 222152451 ppk Phosphorus Phosphorus utilization Streptococcus uberis 0140J superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus uberis; 8.360549737 8.376976195 8.556893806 8.791763442 8.486482625 8.230620693 8.631220841 8.647826712 8.498392349 8.57381783 8.499348434 7.935122859 22293726 ureC Nitrogen Ammonification Thermosynechococcus elongatus BP-1 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Thermosynechococcus;species:Thermosynechococcus elongatus; 8.966728675 8.728315479 8.973853208 8.292568491 8.37787951 8.315371333 8.310896201 8.09679987 8.806288489 8.354010957 8.306082521 8.473623952 170093245 glx Carbon cycling Carbon degradation Lignin Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 8.649043349 8.698388849 8.652365978 7.893637879 7.740699493 8.026914172 7.846983288 8.776228847 7.611473245 8.141245169 7.919481946 85717678 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Nitrobacter sp. Nb-311A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter; 6.991232564 7.370113418 7.097924319 7.130092311 7.286497995 170141754 sigma_24 Stress Sigma factors Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 8.703300572 8.343327821 8.605461106 8.599472415 8.517883986 8.27840765 8.37157417 8.584403854 8.205065587 8.450713539 8.392428603 8.456389725 38427032 narG Nitrogen Denitrification uncultured bacterium 8.980000188 8.597255554 8.859979793 8.360268444 8.470063351 8.346360508 8.231241303 8.312896571 8.529317397 8.12956475 8.332875916 8.220610919 224603320 pstA Stress Phosphate limitation Lutiella nitroferrum 2002 8.441962232 8.040951928 7.981883822 7.362340976 7.750802135 8.037456683 7.270237982 7.325330565 7.189848028 84786795 CadA Metal Resistance Cadmium Erythrobacter litoralis HTCC2594 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 8.438591325 8.687931536 8.566692616 8.466108348 8.331952932 8.25058249 8.276447781 8.436102958 8.479881291 8.198986952 8.252724511 8.350471808 196477391 pstB Stress Phosphate limitation Phenylobacterium zucineum HLK1 8.979199632 9.14012175 8.872096888 8.756825052 9.071413043 9.104649359 9.337196139 8.973094864 8.76460552 8.689399565 8.818863928 8.422963051 222053938 pcc Carbon cycling Carbon fixation Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.298373889 8.42791859 8.345416352 7.862493158 7.54161328 7.986043902 8.238766363 7.751479844 8.328889356 8.012365662 7.975407362 7.774777705 167583776 silC Metal Resistance Silver Burkholderia ubonensis Bu superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ubonensis; 8.60408358 8.454223887 8.610373229 8.477434083 8.487136924 8.363378213 8.59539641 8.66611913 8.137764916 8.35058518 217979765 CopA Metal Resistance Copper Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 8.70704288 8.579657382 8.716650768 8.389337113 8.352060249 8.246478304 8.172519717 8.202475559 8.578681223 8.342795563 8.26587252 8.524542085 77390042 fnr Stress Oxygen stress Rhodobacter sphaeroides 2.4.1 8.439140656 8.565805046 8.417737792 8.565118335 8.29951473 8.594906891 8.53768265 8.559359827 8.638256575 8.471450003 8.424569069 46395332 exoglucanase Carbon cycling Carbon degradation Cellulose Irpex lacteus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;genus:Irpex; 8.354501421 8.253820371 8.279073978 8.475356948 8.365503577 8.429256788 8.355592767 8.255113235 8.073866041 7.96454677 8.108688216 7.880978672 255271005 Tet Antibiotic resistance other Thermoanaerobacter mathranii subsp. mathranii str. A3 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Thermoanaerobacter;species:Thermoanaerobacter mathranii; 9.306764041 9.437794564 9.459481772 8.82097953 8.516232399 8.669590858 8.337886731 8.134906936 8.727420716 8.580726891 8.595012797 8.932095288 118735438 HBH Organic Remediation Aromatics BTEX and related aromatics Dinoroseobacter shibae DFL 12 8.339468503 8.117246664 8.276390735 7.846807692 7.663948378 7.98060374 7.388121647 7.272968763 7.468730972 7.566260899 7.936669312 213410256 katE Stress Oxygen stress Schizosaccharomyces japonicus yFS275 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Schizosaccharomycetes;order:Schizosaccharomycetales;family:Schizosaccharomycetaceae;genus:Schizosaccharomyces;species:Schizosaccharomyces japonicus; 8.729175336 8.458352921 8.419652164 7.841012838 7.708007579 8.128430147 8.764146382 8.13427048 7.52538315 7.607994096 7.989470471 118589390 CopA Metal Resistance Copper Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 10.75958835 10.33112282 10.45765215 9.961879343 9.912246168 9.584511768 10.18259123 10.25460387 10.3340472 10.25447044 10.00849214 10.12668547 114771045 obgE Stress Radiation stress alpha proteobacterium HTCC2255 9.130752943 8.857459175 9.094830508 8.802955934 8.213773056 8.596507433 7.695689551 7.645854762 8.344204484 8.288363568 8.481394782 110168086 pstA Stress Phosphate limitation Trichodesmium erythraeum IMS101 8.514293612 8.472731765 8.608289273 7.966194452 7.895374515 7.806347202 7.685012019 7.272649517 7.61206253 7.497640619 7.967801109 213951855 pimF Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium amycolatum SK46 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium amycolatum; 8.508822864 8.685070849 8.463582141 8.356666411 8.520835923 8.18400993 8.571551756 8.893118549 9.018408387 8.743581549 8.675745699 238715140 xylA Carbon cycling Carbon degradation Hemicellulose Yersinia bercovieri ATCC 43970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 8.530068764 8.406699579 8.112011128 8.124434191 7.908204039 7.9784901 8.338365489 8.334983532 8.25047624 8.223465672 262047740 Tet Antibiotic resistance other Lactobacillus crispatus MV-3A-US superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus crispatus; 8.796516225 8.67451588 8.746895774 8.069153258 7.805897028 8.146836265 8.071431887 7.739389998 8.520091489 8.060890556 8.048889164 8.190748617 170122079 ZitB Metal Resistance Zinc Escherichia albertii TW07627 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 8.106994986 8.119250418 8.152812217 8.236865126 8.411473546 8.37426723 8.517277228 8.585869262 8.422933929 8.753644804 8.778018678 8.448257139 98977415 pcc Carbon cycling Carbon fixation Sphingopyxis alaskensis RB2256 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 9.151499841 9.025287324 8.949463329 8.965768501 8.958021367 8.805500424 9.083835288 9.188675094 9.168180349 8.952550175 8.926223088 9.040762562 256393366 endochitinase Carbon cycling Carbon degradation Chitin Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 9.885420556 9.91724375 10.05326904 9.428825584 9.368689358 9.287358227 9.044939351 9.075210916 9.1663893 9.275032949 9.301367546 9.484118862 210069462 ChrA Metal Resistance Chromium Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 8.656564953 8.743041181 8.602238592 8.446422888 8.168646853 8.356356404 8.26860469 7.816653855 8.019136735 8.173161682 8.3775183 24528404 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.033104445 8.661476507 8.947426678 8.4449841 8.092081935 8.016062566 8.097701923 8.130146761 8.057418105 8.137839518 8.158674076 8.088402118 187426666 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Akkermansia muciniphila ATCC BAA-835 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Akkermansia;species:Akkermansia muciniphila; 9.921420663 9.851665456 9.83318072 10.03429021 10.18450828 10.01453503 9.6833413 9.719232394 10.06448173 10.14597502 161524264 iro virulence Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 8.864076405 8.663142028 8.861033202 9.064739096 8.886430168 8.407026677 8.638719967 9.291782252 8.980294218 8.964542593 8.77158616 9.086151757 121610344 Arylest Organic Remediation Aromatics Other aromatics Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 7.830399214 7.745855643 7.761908641 7.506836045 8.057067911 8.057372756 8.051968034 7.97120585 8.107498024 84043117 pcaG Organic Remediation Aromatics Other aromatics uncultured bacterium 8.550097513 8.624406448 8.865678332 8.428782503 8.298428132 8.169923626 8.360136092 8.412900578 8.912939875 8.342269172 8.453887495 8.350559249 158251620 APS_AprA Sulphur adenylylsulfate reductase uncultured gamma proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 9.298582234 9.361749587 9.583738895 8.818340657 8.693733978 8.719930729 8.674357891 8.62101804 8.806779985 8.866732689 8.853035744 9.021551499 222085487 ppx Phosphorus Phosphorus utilization Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 9.710486178 9.666163545 9.618742262 8.847469744 8.960227525 8.705219163 114798584 chnB Organic Remediation Other Hydrocarbons Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 8.06874166 8.193543305 7.861159208 7.910215421 7.464067244 7.339382546 7.599576416 7.739435345 7.802570753 218533528 cmuA Organic Remediation Chlorinated solvents Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 8.332650174 7.939242944 8.233513134 8.390030887 8.32469587 8.179590869 8.20254406 8.278660073 8.315288687 8.205824377 8.127942464 8.08807766 91802028 sox Sulphur Sulphur oxidation Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 11.25209175 11.07246624 11.09258529 10.8858209 10.84881368 10.55466552 10.90941003 10.8352133 11.33610852 10.9792968 10.90168758 10.97918587 120609842 nagG Organic Remediation Aromatics Aromatic carboxylic acid Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 9.101099378 9.458894076 9.335193711 8.451945975 8.639358808 8.644268225 9.133528492 8.635959791 9.100530177 8.714858824 8.654010348 8.722506302 51870734 gyrB other category gyrB Halobacillus sp. IS-Hb5 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Halobacillus; 8.519372234 8.880183124 8.827115352 8.126542592 8.236348236 8.41353552 8.35404926 8.275554118 8.400054845 8.267746156 8.311980011 8.454066291 71366738 pulA Carbon cycling Carbon degradation Starch Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.319598981 8.084638808 8.286873083 8.134670227 8.177196218 7.969543902 7.79915957 7.751951669 7.851483176 7.800202449 7.966427916 163792948 czcA Metal Resistance "Cadmium,Cobalt,Zinc" alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 9.154931476 9.171620858 9.288240943 8.373088092 8.530421606 8.722377144 9.107157459 8.391186244 9.177528546 8.640045259 8.473088596 8.281132329 196171237 ureC Nitrogen Ammonification Anaeromyxobacter sp. K superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 8.326387159 8.151282716 7.701199065 8.076639252 8.178849698 8.114677891 8.129735704 7.759258086 146408185 ZitB Metal Resistance Zinc Bradyrhizobium sp. BTAi1 8.21959587 8.351522765 7.915951151 7.851474198 7.677813189 7.498074358 7.556878025 7.790821888 7.916646201 7.829246259 8.030815547 150036064 sox Sulphur Sulphur oxidation Thiocystis gelatinosa superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocystis; 8.360845227 8.393054318 8.537601671 7.770149359 7.41275332 7.968084767 7.786154529 8.012947081 7.815324161 7.954736659 7.884408473 166363149 grpE Stress Heat shock Microcystis aeruginosa NIES-843 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 9.739817493 9.635121777 9.446990662 8.167342308 8.198718975 8.315155552 8.129457376 7.901787691 8.093529789 7.916024777 8.118349245 8.106373102 197783435 xylC Organic Remediation Aromatics BTEX and related aromatics Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 9.314260547 9.562225136 9.53681563 9.255117493 9.264474174 9.032837627 9.233396435 9.214879419 9.203107718 9.235993359 9.116010497 9.133352896 126249775 dsrA Sulphur sulfite reductase Pyrobaculum calidifontis JCM 11548 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum calidifontis; 11.00805884 11.16069614 10.93514827 11.00449518 11.06504202 10.90459501 10.95069405 10.83850928 11.29091366 11.19606395 11.13790558 11.0435919 20387218 gyrB other category gyrB Streptomyces spiroverticillatus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.544685261 8.673146731 8.592668851 8.729622927 8.725996088 8.45890826 8.391714213 8.903684877 8.657727112 8.917087035 8.790544208 8.685355862 88816059 katE Stress Oxygen stress marine actinobacterium PHSC20C1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 8.272159234 8.06958883 8.390159677 8.397248631 7.984923719 7.738676759 8.412967737 8.074170917 8.446460459 7.987101984 8.163277889 66766709 mdlD Organic Remediation Aromatics Other aromatics Xanthomonas campestris pv. campestris str. 8004 8.313558382 8.368984101 8.124909763 7.701790186 7.976674321 8.232530771 8.602032067 7.564161283 8.691770146 7.885538061 7.988163875 218247907 glx Carbon cycling Carbon degradation Lignin Cyanothece sp. PCC 8801 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.963239685 8.957399719 8.904297571 8.192897556 8.119023375 8.149162634 8.018747024 7.882914844 8.296286071 7.974108202 7.924988883 8.238745525 26278928 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.890443152 8.487602998 8.126547454 8.071757821 8.144221909 8.069328309 8.071919722 8.564600505 8.135329185 8.081465827 7.892739549 166368955 todF Organic Remediation Others Microcystis aeruginosa NIES-843 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 8.640606731 8.59049705 8.889126195 8.158480595 7.886170935 7.924327577 7.572221041 7.533466658 7.765903553 7.760670081 7.989146299 145701577 4Fe_4S_ferredoxin Bioleaching Electron transport Metallosphaera sedula DSM 5348 8.163654639 8.122624525 8.336067111 7.437728354 7.327298528 7.18942747 7.082635342 7.679302612 254985782 cytochrome Energy process Energy process Geobacter sp. M18 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.885101637 9.007222597 8.784564872 8.811163325 8.78026515 8.62843862 8.5587364 8.587440835 8.759001212 8.965611463 9.357361304 8.933773532 145220119 hrcA Stress Heat shock Prosthecochloris vibrioformis DSM 265 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeovibrioides; 8.359459505 8.152373227 8.372617206 7.977477223 7.807413975 8.066814233 7.840432279 7.863677397 7.973828428 7.767447979 7.799573249 7.87620314 150009934 ChrA Metal Resistance Chromium Parabacteroides distasonis ATCC 8503 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides distasonis; 8.725412524 8.460900803 8.563106128 8.344210824 8.188437512 8.320335732 8.043803764 8.573155119 8.196639256 8.448264448 8.357564947 8.533669913 158437904 obgE Stress Radiation stress Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 8.411303442 8.436275858 8.608613067 8.114689122 8.263878217 8.332830113 8.197788856 8.80074168 8.195427421 8.39616302 8.507695353 8.10267009 146401986 glycosyl_transferase_EPS Bioleaching EPS Acidiphilium cryptum JF-5 8.440855005 8.735356924 8.337726802 8.728241086 8.76050075 8.499394281 8.95437472 8.58512856 8.64373065 8.755666909 8.447445558 227843892 glnA Stress Nitrogen limitation Mobiluncus mulieris ATCC 35243 8.336095889 8.083701156 8.158764573 7.943164299 7.506948646 7.866007974 7.965183287 8.112858989 8.24207326 8.140600029 7.498083477 214042465 MFS_antibiotic Antibiotic resistance transporter Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.241397182 8.000934894 7.670809485 7.50236522 7.661482505 7.830938392 7.566163899 8.196789875 7.876412501 7.707830986 7.738070132 77378595 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.860688352 8.576989869 8.402930666 8.768413753 8.601026893 8.476463479 8.502359098 8.602114722 83816748 gyrB other category gyrB Salinibacter ruber DSM 13855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 9.356521772 9.289377513 9.482957069 8.956164016 8.716320554 8.511929963 8.364629431 8.385735407 8.707543996 8.843442097 8.967356149 115519753 HBH Organic Remediation Aromatics BTEX and related aromatics Rhodopseudomonas palustris BisA53 9.544752044 9.478056932 9.469816115 8.923419134 8.907226905 8.905934705 8.514776418 8.627859756 8.662007086 8.638417013 8.914235318 8.932444193 119400772 exoglucanase Carbon cycling Carbon degradation Cellulose Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 8.093445317 8.147226786 7.283647512 7.460266884 7.732066423 7.953139499 7.231740202 7.968767531 7.562525071 7.445969316 7.672830193 197103875 sigma_32 Stress Sigma factors Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 8.505529155 8.598956738 8.650920035 8.417452687 8.493618019 8.351539845 8.530397982 9.010410628 8.448498884 9.033793004 8.874449937 9.010066432 157285316 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.57061655 8.441230635 8.374477347 8.252102633 8.263929448 8.435980186 8.775365689 8.861958619 8.793811558 8.801809394 78167192 pcc Carbon cycling Carbon fixation Pelodictyon luteolum DSM 273 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon luteolum; 9.016451199 8.559881124 8.888257285 8.625446728 8.357384322 8.543978511 8.564081369 8.565722047 8.573392171 8.437217041 8.2593011 71368292 CODH Carbon cycling Carbon fixation Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.35374862 8.081489067 8.12704736 7.975122513 7.975490544 7.911027532 8.059200231 8.015922622 8.479660078 8.185472318 8.140849632 117986723 ALN Organic Remediation Others Burkholderia phymatum STM815 10.41943651 10.30387949 10.51610773 9.436702161 9.680216928 9.442478298 9.541339471 9.155994671 9.943304511 9.731158139 10.00654487 9.925960082 114570547 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 8.740152134 8.438134952 8.481395734 8.372082021 8.31552351 8.058367305 7.843274656 8.440569251 8.367770054 8.432192984 8.334127357 8.237580376 189338852 ArsC Metal Resistance Arsenic Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 8.766204671 8.873758969 8.821992203 8.577785007 8.473798508 8.239899911 8.611323607 8.672509354 8.638343732 8.616739726 8.580507539 8.750044792 78222564 glnA Stress Nitrogen limitation Geobacter metallireducens GS-15 8.545913541 8.435505074 8.071115677 7.940862973 7.872565897 7.433357406 7.292608508 7.507466221 7.389236412 7.750167194 153005405 sigma_32 Stress Sigma factors Anaeromyxobacter sp. Fw109-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 9.25088658 9.199514285 9.88072759 9.758499181 9.635196878 121533852 fnr Stress Oxygen stress Thermosinus carboxydivorans Nor1 8.617278668 8.634479803 8.782390495 8.098954348 8.074544413 8.224366464 8.171218659 8.066699921 8.204094576 7.991470735 8.120563485 8.341022443 169243450 ahpC Stress Oxygen stress Mycobacterium abscessus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.29720383 8.08733218 8.531114468 8.237900233 8.261038965 8.041353784 7.849796381 8.282311664 8.356975983 7.962793565 7.833483257 7.921574859 269125057 sigma_24 Stress Sigma factors Thermomonospora curvata DSM 43183 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora;species:Thermomonospora curvata; 8.526062184 8.396353503 8.301984237 7.873976181 8.277883979 8.343328034 8.230509686 8.379320508 8.126778296 8.226999416 7.87308001 881939 norB Nitrogen Denitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.774351544 9.068491114 8.867969605 8.792316516 9.146611105 8.431748558 8.56930323 8.66486266 8.307586553 8.678179924 8.775490166 8.446361982 39648290 sox Sulphur Sulphur oxidation Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 11.12153299 10.85917809 10.96474386 10.17484603 10.23770928 10.2419245 10.55771544 10.03113527 10.58958546 10.18036682 10.25460036 10.53133916 111017618 atzC Organic Remediation Herbicides related compound Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.837047157 8.99148231 8.905070282 8.320782155 8.223360677 8.294719741 8.526581606 8.15527101 8.914350908 8.112897979 8.080271258 8.296119156 229866563 B_lactamase_C Antibiotic resistance Beta-lactamases Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 7.210798762 7.344755999 7.497734062 7.421785267 7.109022132 7.961494014 7.188690928 7.092495834 229379899 B_lactamase_C Antibiotic resistance Beta-lactamases Oxalobacter formigenes OXCC13 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Oxalobacter;species:Oxalobacter formigenes; 8.342284458 8.123125666 7.272259585 6.898944352 7.46819504 7.435049574 78693202 dehH109 Organic Remediation Chlorinated solvents Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.169741548 8.089158312 7.302244592 7.337186591 7.915613165 6.981484679 7.840860952 7.381532246 6.999242401 7.564764553 254502778 pstB Stress Phosphate limitation Labrenzia alexandrii DFL-11 8.464993473 8.163165169 7.651423293 7.350237608 7.467257537 7.988530339 7.611138707 7.343549611 7.459687547 7.433371837 70990710 ureC Nitrogen Ammonification Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 10.43080447 9.729861718 9.946129745 10.11260097 9.858218693 9.633984446 10.09991408 9.965107174 9.663414742 9.769069597 9.932125774 9.821516456 255303785 oxyR Stress Oxygen stress Acinetobacter radioresistens SK82 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter radioresistens; 8.469235277 8.29503142 8.11075175 7.817303059 7.610183441 7.963764017 7.918397926 218724260 ara_fungi Carbon cycling Carbon degradation Hemicellulose Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 8.970852804 8.62411505 8.382339936 8.195800069 8.180928314 8.152705634 8.143668483 8.49645075 8.070738285 8.28855238 7.784116747 221133539 TehB Metal Resistance Tellurium Glaciecola sp. HTCC2999 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola; 8.601430798 8.720721708 8.924849731 7.948895519 8.104860335 8.306880295 8.020772687 8.192650294 8.253145209 8.250991835 7.97316391 88864950 nagI Organic Remediation Aromatics Aromatic carboxylic acid Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 8.438585654 7.926468523 8.307035431 7.36188351 7.295112578 7.456471673 7.145082085 6.628525356 7.544678222 7.263348758 7.13470146 16414959 nmoA Organic Remediation Aromatics Nitoaromatics Listeria innocua superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria; 9.748329773 9.537650639 9.695937895 8.978159506 8.867596302 8.836518671 8.619877862 8.602397042 8.685665312 8.87843046 8.770659155 9.180127671 218241557 katE Stress Oxygen stress Alicyclobacillus acidocaldarius LAA1 8.265712593 8.622039486 8.417772379 8.185081702 8.382003693 8.884593438 8.726737606 8.70781402 8.491878699 8.373384005 8.735933683 8.587058633 8546916 dehH Organic Remediation Chlorinated solvents Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 9.137004495 8.494849376 8.841141364 8.909587713 8.670377405 8.795995966 8.748349794 8.220294814 8.719550776 8.53447179 8.533236176 108804896 fnr Stress Oxygen stress Rubrobacter xylanophilus DSM 9941 8.926416162 8.874383154 9.001269891 8.28305128 8.119197609 8.16182001 8.215398938 7.849032378 8.493444634 7.958778192 7.893905734 8.291650352 39578239 CODH Carbon cycling Carbon fixation uncultured proteobacterium superkingdom:Bacteria;phylum:Proteobacteria; 8.634495602 8.691147513 8.561560625 7.5350065 7.938214255 8.052455222 7.844356629 8.471752786 8.144172099 108764210 nicdehydr Organic Remediation Aromatics Heterocyclic aromatics Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 8.590668025 8.471360457 8.413622485 8.873227961 8.966791243 8.903941329 8.303386044 8.988737811 8.454764086 8.760816127 8.701199974 9.081009205 148552989 sigma_32 Stress Sigma factors Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.682477159 8.477713456 8.866783904 8.937686755 8.573528284 8.525131602 8.595204301 9.092560639 8.632878446 8.775681867 8.478261375 9.032780878 117924334 ureC Nitrogen Ammonification Magnetococcus sp. MC-1 superkingdom:Bacteria;phylum:Proteobacteria;genus:Magnetococcus; 9.261060588 9.238815151 9.307345043 8.601878115 8.398041411 8.432504166 8.441717115 8.419470698 8.529897941 8.622909368 8.412951786 8.771038889 85375710 MATE_antibiotic Antibiotic resistance transporter Erythrobacter litoralis HTCC2594 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 8.67436967 8.58212353 8.693330296 8.665957163 8.529070019 8.626551915 8.368109555 7.995977396 8.31921865 8.051340324 149184164 pcc Carbon cycling Carbon fixation Bacillus sp. SG-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 8.716342159 8.681448323 8.826876305 8.340382541 8.115369343 8.136614977 8.10596508 8.078479568 8.150574926 7.927970343 7.861923906 8.276351923 116222310 gyrB other category gyrB Solibacter usitatus Ellin6076 8.558303455 8.689553608 8.836207823 8.095317782 8.001143056 8.080552301 7.602844822 8.113938399 8.043836384 7.840805852 7.800547278 8.070318496 229362308 cytochrome Energy process Energy process Pseudomonas fluorescens SBW25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 9.218660095 9.089132367 9.393005951 8.497619825 8.842887231 8.39043542 8.474999046 8.210379739 8.386258649 8.446626682 8.554625596 8.335860634 247540381 pstC Stress Phosphate limitation Dickeya zeae Ech1591 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 9.069649264 9.140125368 9.250812744 8.811366584 8.703370861 8.616966387 8.705385932 9.092664103 8.713428673 9.002039717 8.556617105 8.827196677 238026610 sigma_24 Stress Sigma factors Burkholderia glumae BGR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia glumae; 8.135408048 8.246203528 7.578285031 7.610524146 7.717091871 7.98024053 7.582481811 7.655659407 7.647521075 7.46080495 7.794846079 222354276 hao Nitrogen Nitrification uncultured bacterium superkingdom:Bacteria; 8.269674594 8.243657546 8.112523641 7.809306429 8.277398465 8.181888662 8.864982486 7.786383755 8.849865137 8.079586037 7.685497512 8.360953493 56677086 Arylest Organic Remediation Aromatics Other aromatics Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 8.582136401 8.448646046 8.511072861 7.951855159 7.836905954 7.62166222 8.062131506 8.342932021 8.380337386 8.123833633 8.338636471 171851655 sigma_24 Stress Sigma factors Corynebacterium urealyticum DSM 7109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium urealyticum; 8.983176154 9.161445069 9.001361388 9.22937753 8.89580179 8.939172986 9.469137125 9.074476432 8.8815793 9.392552272 9.444736823 9.152457501 94550580 cda Carbon cycling Carbon degradation Starch Acidobacteria bacterium Ellin345 8.497895386 8.367870763 8.260436987 8.174644357 8.563885328 8.569274703 8.714074545 8.581219898 8.337653717 8.005206584 8.4015607 8.125664238 229473067 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 8.359191377 8.795146351 8.805613651 8.713491134 8.745806291 8.643704832 8.976452369 9.172618776 9.01515891 9.413014577 9.01292326 9.187036059 158509754 TehB Metal Resistance Tellurium Candidatus Desulfococcus oleovorans Hxd3 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus;species:Desulfococcus oleovorans; 7.896700952 7.630784675 7.516552553 7.804496584 7.700346147 7.563038738 7.380647505 7.535829284 212640012 amyA Carbon cycling Carbon degradation Starch Anoxybacillus flavithermus WK1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Anoxybacillus;species:Anoxybacillus flavithermus; 8.500042279 8.758420566 8.893914673 8.381412996 8.339758853 8.084074551 8.014551971 7.978473403 8.377064407 8.04584407 7.803678706 8.278550148 86137743 narI Stress Oxygen limitation Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 9.145683929 8.919433735 8.964259268 8.400928121 7.830314498 8.071717411 8.597973657 8.249846138 8.656284237 8.058213117 8.080095567 7.966114439 33320472 dsrB Sulphur sulfite reductase Desulfovibrio piger superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 9.187509385 9.520300544 9.117172269 9.039382855 9.826074414 9.794950407 9.929592024 9.671238975 9.3898995 9.818382643 9.329290612 169885626 gyrB other category gyrB Synechococcus sp. PCC 7002 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 9.535862712 9.860799684 9.260023309 9.300505637 9.562838509 9.661389489 10.07954364 9.983944672 9.670692294 10.15523822 9.97767747 9.864523522 228563873 clpC Stress Protein stress Dethiosulfovibrio peptidovorans DSM 11002 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Dethiosulfovibrio;species:Dethiosulfovibrio peptidovorans; 9.008676475 9.099435689 9.051167647 8.009365674 8.284578925 8.341640008 8.225251801 7.898175775 8.169420497 7.967989138 8.310662476 161784728 exaA Organic Remediation Chlorinated solvents Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 10.15071401 10.10286104 10.09518985 9.767044775 9.569514899 9.40712692 9.797806091 9.597021735 9.551973735 9.282617366 9.291480407 9.578656068 50285095 ppx Phosphorus Phosphorus utilization Candida glabrata CBS138 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Nakaseomyces;species:Candida glabrata; 8.657635855 8.620690964 9.027852604 8.113504276 7.898912286 7.921173685 7.633661835 7.404156086 7.91135191 7.748169493 7.587013833 8.07995491 118591406 ureC Nitrogen Ammonification Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 7.801766788 7.711635275 7.77587385 7.635521673 7.712051996 8.05430891 7.855458277 7.802183213 7.52532567 94471359 narG Nitrogen Denitrification uncultured bacterium 8.339685385 8.034206451 8.286873083 7.600417836 7.688226925 7.663473187 7.427365196 7.276551668 7.984090897 7.392833211 7.530846053 7.382165982 147678007 pstS Stress Phosphate limitation Pelotomaculum thermopropionicum SI superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Pelotomaculum;species:Pelotomaculum thermopropionicum; 8.107791927 8.287651727 7.413765111 7.626858276 7.895931589 7.415679653 6.949880297 7.979310974 7.486801552 7.291122154 7.944116484 184200181 nirA Nitrogen Assimilatory N reduction Kocuria rhizophila DC2201 8.460474612 8.489879629 8.16862417 7.731063364 7.77806697 7.892689233 8.060138068 7.720309256 8.509021035 7.67082664 7.710280032 7.985464359 114562960 cda Carbon cycling Carbon degradation Starch Shewanella frigidimarina NCIMB 400 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella frigidimarina; 8.681499542 9.066261733 9.025523189 8.151731136 8.384274254 9.01427009 9.458306979 8.95666173 8.451506513 8.878852213 8.831806167 261366322 Tet Antibiotic resistance other Subdoligranulum variabile DSM 15176 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Subdoligranulum;species:Subdoligranulum variabile; 8.545061586 9.123148379 8.143328227 8.252621161 8.736473022 9.02029678 8.537589377 8.674177737 8.437156503 8.512171651 8.574936259 88790335 hrcA Stress Heat shock Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 9.098643626 9.077413284 8.946702141 8.089549762 8.226813485 8.490383007 8.603542188 8.101131508 8.4269112 13274586 amyA Carbon cycling Carbon degradation Starch Pseudomonas sp. KFCC10818 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.607099813 8.262469129 8.230966944 8.028410655 8.533120885 8.218594532 8.161820573 8.295032864 8.711838194 163840870 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Renibacterium salmoninarum ATCC 33209 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Renibacterium;species:Renibacterium salmoninarum; 8.316969163 7.927395092 7.951091207 7.282691732 7.450154746 7.597027692 7.906829857 7.217825785 8.066902431 7.791815324 7.227951186 7.479614447 214036822 tfdA Organic Remediation Aromatics Chlorinated aromatics marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 9.293236832 9.312482901 9.382290048 8.651980465 8.72790163 8.835665608 8.516626856 8.550375359 8.726365893 8.610073692 8.675411298 8.914142263 170077910 mer Metal Resistance Mercury Synechococcus sp. PCC 7002 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.260419013 8.34252248 8.051962762 8.037513958 7.848830562 7.753248613 7.798829052 7.746879368 7.508472956 7.333715616 7.641498 109897770 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 8.940594422 8.947246221 8.897558701 8.323117233 8.107802986 8.170756905 7.725843999 7.680546529 8.281330954 8.243418365 8.083030034 8.461254657 108764717 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 8.328630138 8.319600838 8.371854285 7.919557579 7.970649766 8.014125786 8.245588494 7.797563944 8.005170417 7.793487346 8.055372711 8.268587673 148242910 sigma_70 Stress Sigma factors Synechococcus sp. RCC307 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.504762001 8.10192035 8.65658361 8.523438478 8.177983629 8.077806839 7.782433344 8.248029348 8.418500752 8.398202249 8.156968719 8.256437003 35212122 nirA Nitrogen Assimilatory N reduction Gloeobacter violaceus PCC 7421 9.027285485 9.349173541 9.093282983 9.225705293 9.074798382 9.260371563 8.902134134 9.519835871 9.209760712 9.549437452 9.039300111 255284239 srt virulence surface protein Bryantella formatexigens DSM 14469 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;species:Bryantella formatexigens; 9.929169028 9.724980957 9.977070548 9.190587005 8.985844283 8.979356363 8.809183279 8.694791324 8.804310247 9.017030305 8.884522926 9.290184091 121996904 pstA Stress Phosphate limitation Halorhodospira halophila SL1 9.179134008 9.52889408 9.383997355 9.183211032 9.406366007 9.12055578 9.452512732 9.529736678 9.09693851 9.778210605 9.543215522 9.431484307 23664434 bclA Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus evansii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8.839155117 9.087189344 8.779037509 8.337281777 8.848510442 8.968091105 9.200390664 8.358512515 9.145170024 8.447700089 8.744557033 8.408991955 88866251 pimF Organic Remediation Aromatics Aromatic carboxylic acid Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 8.782208494 9.159840258 8.899935701 8.613468292 8.613169431 9.20013368 9.539320317 8.953429033 9.381967357 8.485036475 8.665009961 8.813649324 262198111 sigma_24 Stress Sigma factors Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Haliangiaceae;genus:Haliangium;species:Haliangium ochraceum; 9.13194492 9.155417292 9.605961208 9.404703033 9.51172635 9.107525047 9.248129061 9.310959289 9.637816337 9.516050902 13183747 bphF1 Organic Remediation Aromatics Polycyclic aromatics Pseudomonas aeruginosa 8.614037391 8.616668048 8.500899376 7.956434942 7.786301214 7.941473446 8.112543036 7.55573282 8.30068654 7.7404067 7.654092226 7.870389765 87283379 CopA Metal Resistance Copper Synechococcus sp. WH 5701 8.567888388 8.476327848 8.515090301 7.941319952 8.077464356 8.143370079 7.812865601 7.853031251 8.050991997 7.813493253 8.051735763 8.101355162 157373940 cytochrome Energy process Energy process Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 7.11061717 7.052596638 6.914451401 7.391985341 82791399 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 9.567848523 9.575197697 9.511211058 8.658634031 8.753773527 8.925973487 9.18571758 8.814244826 9.038748909 8.744308701 8.880455142 8.962055003 225077486 sigma_24 Stress Sigma factors Neisseria flavescens NRL30031/H210 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria flavescens; 8.251107853 8.352356745 8.141958639 8.268523819 7.982625496 8.098501108 8.418381195 8.171159438 8.340193579 8.118428824 8.044621255 156066928 endoglucanase Carbon cycling Carbon degradation Cellulose Cellulomonas flavigena superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas; 8.700418907 8.990005317 8.213915085 7.999281028 8.03292544 8.128871261 8.165464427 8.258720033 8.27369625 8.261718563 8.18646197 8.30343639 227952873 obgE Stress Radiation stress Meiothermus silvanus DSM 9946 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 8.592471106 8.59077959 7.856760798 7.573151205 7.93064762 7.878891523 7.923426191 7.947829328 7.850685357 7.850999398 7.961928293 221067912 fnr Stress Oxygen stress Comamonas testosteroni KF-1 9.249306415 9.279224716 9.173177207 8.962587705 8.774949961 8.742467029 9.187520838 8.865159963 9.324346408 8.749165287 8.587843491 8.695174188 237731258 katE Stress Oxygen stress Citrobacter sp. 30_2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter; 8.174924793 8.604358879 8.310966863 8.384967239 8.420523871 8.104872814 8.336364338 8.253369022 8.401537731 8.095278517 7.785851686 7.809769925 77637375 ZntA Metal Resistance Zinc Alkaliphilus metalliredigenes QYMF 8.806131486 8.695249839 8.435952561 8.328494678 8.440969983 8.579927866 9.105972307 8.670371291 8.854265691 8.263291463 8.334616277 8.467601917 154151231 glnA Stress Nitrogen limitation Candidatus Methanoregula boonei 6A8 8.312812843 8.027701829 7.503339219 7.453533612 7.482617076 7.053526203 7.302427032 7.454136315 7.46901421 7.545159772 91693344 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 10.17039704 9.967452115 10.11493257 9.844518515 9.630692373 9.790256596 9.700395741 9.89030759 9.576330637 9.686410424 9.723192689 9.795487443 83951558 B_lactamase_C Antibiotic resistance Beta-lactamases Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 8.463653304 8.673083117 8.165680495 8.151558274 8.447538237 7.794858201 8.524064239 8.294756289 8.356399105 8.465154675 7.773549517 254482135 glnA Stress Nitrogen limitation marine gamma proteobacterium HTCC2148 8.628007687 8.438990126 8.812950013 8.059882985 8.004601665 7.782955979 7.718709335 7.498118359 7.772111803 7.603085608 7.778849804 8.063409514 91786883 bphA Organic Remediation Aromatics Polycyclic aromatics Polaromonas sp. JS666 7.973663037 7.831687728 8.087209475 7.628383083 7.659451855 7.674978851 7.502323534 7.753578799 7.811052303 7.695813416 7.64864674 7.705490387 118619264 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 8.220392948 8.454619567 8.449902484 7.928866892 7.963355418 7.861845675 8.354100295 7.769254539 8.714781896 7.773997858 7.68261019 7.797520189 78101823 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.26600699 8.096028264 7.872124596 7.932207315 7.932663507 7.864749799 8.054810613 8.301829164 8.006732254 7.879816307 7.933955102 218248405 ppx Phosphorus Phosphorus utilization Cyanothece sp. PCC 8801 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.222144353 8.172974964 7.72915051 7.817118494 7.653384413 7.309896797 7.723636669 7.665042412 7.883097132 7.46325949 7.882947745 222451136 sigma_24 Stress Sigma factors Chloroflexus sp. Y-400-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus; 8.619918289 8.679387996 8.35458192 8.076026763 7.895257283 7.939535172 8.684396954 8.089053042 8.740994024 8.059727825 8.17731856 7.766519771 146343608 sox Sulphur Sulphur oxidation Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.453935378 8.497306093 8.195560881 7.826868519 7.928305813 8.382535796 7.968719322 8.622225159 7.698157478 8.045724271 7.862083706 242240620 grpE Stress Heat shock Dickeya dadantii Ech703 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 8.185882502 8.301817383 8.369896706 7.642088166 7.747842674 8.071328579 8.444745164 7.528478517 8.538529662 7.805837391 7.701411605 7.841558576 149822532 sigma_70 Stress Sigma factors Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 9.89418525 9.945422882 9.802594713 9.767430964 9.479509459 9.571418945 9.999448731 9.747752099 9.976593339 9.343218645 9.423784044 9.253977212 212679722 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Providencia rustigianii DSM 4541 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 8.494953053 8.697097164 8.816521662 7.857075621 7.803017508 7.9185272 7.61351636 7.51299309 8.214440463 7.821248652 7.675907607 7.871111278 238918096 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella ictaluri; 9.279105908 9.19071995 9.326438144 8.500216823 8.591551174 8.65762936 8.562519406 8.47092875 8.741794667 8.452220021 8.521399245 8.80016633 256760710 pilin virulence pilin Thiomonas intermedia K12 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas;species:Thiomonas intermedia; 7.533351788 7.559126665 7.734857927 6.984229833 7.573475451 7.616022305 7.501048918 7.232942972 7.484072456 88783066 sigma_24 Stress Sigma factors Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 9.525710711 9.484672833 9.360067243 9.029072745 8.870484949 8.78058091 8.548928462 8.547417663 8.622184622 8.716935373 8.804067975 8.970011911 89200909 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Bacillus cereus subsp. cytotoxis NVH 391-98 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cytotoxicus; 6.961730067 7.552821716 186685979 pcpB Organic Remediation Herbicides related compound Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 8.325507674 8.224068012 7.325754623 7.321183022 7.334171477 7.17223966 6.917667836 7.571954627 7.419147039 7.322703558 7.658828823 148830424 obgE Stress Radiation stress Erythrobacter sp. SD-21 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 10.16120745 10.42162988 10.24956275 9.654401943 10.10948074 10.25499931 10.63721974 9.90184536 10.22878879 9.556912921 9.999646328 9.746255987 211591720 mannanase Carbon cycling Carbon degradation Hemicellulose Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 9.02146998 8.732315514 8.867934186 9.087496531 8.515060168 227096403 katE Stress Oxygen stress Geodermatophilus obscurus DSM 43160 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Geodermatophilus;species:Geodermatophilus obscurus; 10.55769261 10.3575374 10.3850067 9.658412074 10.13041352 10.08586741 9.489928546 10.29648545 10.04322164 10.31591585 9.900429367 110647465 aclB Carbon cycling Carbon fixation Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 7.411138236 7.293920427 6.932132116 7.337110655 7.90819116 7.638703386 7.516206877 7.671757813 115401802 ara_fungi Carbon cycling Carbon degradation Hemicellulose Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 8.887099874 8.739650065 9.198279322 8.421535257 8.307288075 8.327143683 8.210470233 8.060558966 8.338913693 8.051201278 7.920088621 8.403410165 242791110 AceA Carbon cycling Carbon degradation others Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 9.422490696 9.197484174 9.245900812 8.798722936 8.917594294 9.095263151 9.321230565 8.941001271 9.361639421 8.828043502 8.928637117 8.954624213 158438405 trzN Organic Remediation Herbicides related compound Clostridium bolteae ATCC BAA-613 8.962718941 9.096920982 9.273253869 9.004473117 9.015173873 219544730 TerC Metal Resistance Tellurium Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 8.53066876 8.351626389 8.673130311 7.57639989 7.7582794 7.569501718 8.184771716 7.351463528 8.048034939 229865729 cap virulence capsule Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 8.537074824 8.663346365 8.263208695 8.343352812 8.022436621 8.364427429 8.255532562 8.187567874 8.21081713 8.369555623 7.955823177 161385505 pimF Organic Remediation Aromatics Aromatic carboxylic acid Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 8.495396949 8.328730277 8.469379397 8.226357278 8.001129377 8.002591399 8.473207661 7.933423126 8.551253293 7.999176605 8.164251122 7.864837848 76883336 ZntA Metal Resistance Zinc Nitrosococcus oceani ATCC 19707 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 9.095398298 8.729276035 9.200314525 8.459886999 8.293115173 8.38576655 8.191725024 8.006473197 8.021752283 8.421315989 39943288 ZntA Metal Resistance Zinc Magnaporthe grisea 70-15 8.442494138 8.482583014 8.465968461 7.936939268 7.9549936 8.097596852 7.762136463 7.849394295 8.224012044 7.973014513 7.99389971 7.951107096 260091722 katE Stress Oxygen stress Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 9.925868063 9.982913874 10.08553746 10.53526559 10.59287393 10.26900959 10.37407858 10.62959861 10.34493261 10.5905949 10.49996777 10.1540739 68537002 ppx Phosphorus Phosphorus utilization Corynebacterium jeikeium K411 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 9.066663849 8.988007287 9.07982458 9.024388877 8.889690145 8.871445735 8.644410628 9.001087097 8.907891261 9.174587044 9.039690528 9.150329882 150018633 cellobiase Carbon cycling Carbon degradation Cellulose Clostridium beijerinckii NCIMB 8052 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium beijerinckii; 8.502248675 8.491652194 8.67976423 8.01365893 7.801989506 7.91579194 7.40178071 7.51822103 7.885808317 7.762620004 7.53460711 8.105117971 27376124 sox Sulphur Sulphur oxidation Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.763603844 8.454007986 8.235031915 7.825406786 8.189835212 8.395029923 8.148350862 8.158370744 8.079809573 8.223873461 85705956 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.587758654 8.89135087 8.556846239 8.01240813 8.096091703 8.081519421 7.989231843 7.75408252 7.82730453 7.992159464 8.076206516 259164827 ABC_antibiotic_transporter Antibiotic resistance transporter Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 9.764647984 10.02273594 9.731253311 8.871626824 9.402482054 9.345267497 9.436787475 9.773194077 9.218818661 9.575866489 9.520607967 9.462645137 29607170 4HBH Organic Remediation Aromatics BTEX and related aromatics Streptomyces avermitilis MA-4680 8.967672604 8.922182006 8.914235519 8.459765421 8.485398897 8.466636843 8.576934145 8.334551158 8.700743492 8.306702204 8.370872792 8.444043027 253826077 endochitinase Carbon cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 8.831694343 9.080179943 8.653845777 9.048331678 9.032242053 9.048860524 8.772823863 9.146118059 8.568964665 9.016447588 9.037839937 8.865526707 254948266 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Dyadobacter fermentans DSM 18053 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 8.857541777 8.796041434 8.840700863 8.146978456 8.385249276 8.167427706 8.141222713 8.304090325 8.443393955 8.121191419 8.047149534 8.165621894 82618399 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.275060358 8.636010912 8.67460439 8.383032053 8.421871993 8.433161931 8.302790905 8.390732221 8.543950456 8.139999639 8.462814806 8.187195507 242237903 AceA Carbon cycling Carbon degradation others Dickeya dadantii Ech703 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 8.828055827 8.847442438 8.738818561 8.648956528 8.657360223 8.753120251 7.909379344 8.642452703 8.603275109 8.91262498 9.125183898 8.333907518 160901271 alkJ Organic Remediation Other Hydrocarbons Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.553190711 8.535289749 8.766836793 8.096839186 7.950557791 7.970232462 8.233570486 7.67337214 8.501576733 7.961668703 7.956636759 7.736072863 28867346 cytochrome Energy process Energy process Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 8.202686614 8.206717207 8.131237962 8.051629696 7.926243283 7.870949033 8.183710723 8.155655483 8.044598724 7.79213425 8.114462216 207724888 NiR Nitrogen Assimilatory N reduction Ralstonia solanacearum MolK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 8.305365747 8.155986724 8.33247148 8.202525938 8.090635771 7.844290955 8.172527366 8.232047434 8.214358967 8.223139099 8.310731987 7.92311301 33576204 pcpE Organic Remediation Herbicides related compound Bordetella bronchiseptica RB50 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella bronchiseptica; 7.963172086 8.093879671 7.971015444 8.094923106 8.180563794 8.26566128 8.241935207 8.270724628 7.936162853 255263211 sigma_24 Stress Sigma factors Thalassiobium sp. R2A62 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Thalassobium; 8.387921203 8.689908991 8.266382597 8.208928135 8.185218878 8.004942737 8.137929522 8.133383992 8.304594123 7.735411954 8.074975649 116069274 hrcA Stress Heat shock Synechococcus sp. RS9916 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 9.541508587 9.429775533 9.379591298 8.740751333 8.674234026 8.586933185 8.546491631 8.382241917 8.704629599 8.502468183 8.486613354 8.78720271 222087170 MFS_antibiotic Antibiotic resistance transporter Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 9.179076988 9.122805503 8.891999767 9.383250274 9.329947038 9.180028487 9.460114426 9.407434043 9.014978011 9.229541506 9.103971605 9.014134586 282878568 cap virulence capsule Prevotella buccalis ATCC 35310 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccalis; 6.98665327 6.881080633 219677926 cpnA Organic Remediation Other Hydrocarbons gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 9.082108612 9.036725802 9.109614602 8.360289604 8.468788553 8.626142107 8.59542313 8.587913032 8.683057695 8.670280034 8.774110782 8.555058778 254442602 ara Carbon cycling Carbon degradation Hemicellulose Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 8.556369322 8.733442929 8.251835785 8.19887139 8.346412676 8.867704697 8.512606198 8.229437443 8.217107945 8.039179756 156188199 mauAB Organic Remediation Herbicides related compound Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 9.207352368 8.979992013 8.965150422 8.477428232 8.536509013 8.694341564 9.042778305 8.791665421 9.136738351 8.618823462 8.876476397 8.488142391 189207302 pheA Organic Remediation Aromatics Other aromatics Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 9.063971154 8.814549905 9.175067568 8.459078952 8.14313158 8.072320109 7.917845085 8.134438935 8.394017995 160940362 ahpC Stress Oxygen stress Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 8.84564575 8.726873852 8.874286936 8.251341093 8.091994125 8.151013533 7.776094319 7.67186269 7.990852639 7.767543773 7.631838847 8.09411497 21225570 TerD Metal Resistance Tellurium Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 9.596717841 9.488506881 9.59715274 9.47912273 9.415755241 9.214362724 9.262256898 9.485010662 9.408745172 9.421647042 9.268910453 9.55590085 121611514 bphA Organic Remediation Aromatics Polycyclic aromatics Verminephrobacter eiseniae EF01-2 8.799860535 8.537483682 8.931069688 7.935913886 7.790313709 7.564140661 7.641813228 7.886194085 7.858247268 8.15998477 7.915692277 7.992357891 170776213 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 8.571805924 8.57016102 8.794629099 8.626184936 8.622676331 8.082635517 8.676768959 8.869745819 8.26856692 8.54611551 8.64727857 8.117417373 192359209 pilin virulence pilin Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 9.158268221 8.98925969 9.299856525 8.650110672 8.49937223 8.494367414 8.201931554 7.965519542 8.684530198 8.125390073 8.236879419 8.645336953 86569029 pcc Carbon cycling Carbon fixation Frankia sp. CcI3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.910708459 8.60586256 8.972664641 8.506143409 8.742621579 8.206763764 8.554285746 8.862142817 8.882668824 8.867874222 8.797428713 268611162 mannanase Carbon cycling Carbon degradation Hemicellulose Ruminococcus flavefaciens FD-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus flavefaciens; 7.987744798 7.971474543 8.158307538 7.472992368 7.323357222 7.457071685 7.316423387 7.50584961 7.829955278 7.586652285 7.379835898 7.494709752 89473928 nifH Nitrogen Nitrogen fixation uncultured cyanobacterium superkingdom:Bacteria;phylum:Cyanobacteria; 8.417838794 8.282755732 8.114886484 7.877223883 7.874198627 7.75135961 7.980036589 8.0042226 8.335094834 7.989267363 7.690415038 7.828972995 116505323 katE Stress Oxygen stress Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 8.308687808 8.185950169 8.739895791 8.149923775 7.57913959 7.972340264 8.683934367 8.034415513 8.126234832 7.931878355 162452978 napA Nitrogen Dissimilatory N reduction Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 9.003072679 8.939985742 9.114742602 8.540111674 8.540205358 8.636675102 8.889035396 8.806998702 8.899267987 8.616800126 8.260648807 8.562307272 197697987 clpC Stress Protein stress Streptomyces sp. SPB74 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.19136584 8.333572452 7.78145797 8.151509013 8.350435639 8.10517198 8.71114896 7.845642371 7.904794705 7.767242186 85774671 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 8.375780827 8.459813732 8.200276311 7.945345636 7.967576462 8.39762788 8.684057665 8.275721563 8.711783308 8.220683626 8.265119763 8.06353371 124262382 chnB Organic Remediation Other Hydrocarbons Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 8.119882029 8.255963433 8.147537234 8.077312135 8.055599488 7.67099682 7.895005348 7.907069118 8.085566827 7.772920057 8.041289418 7.472889163 88702041 ureC Nitrogen Ammonification Congregibacter litoralis KT71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 8.935991049 8.965275863 9.070418574 8.587428696 8.502195991 8.32659956 8.421717739 8.571515834 8.779009854 8.401432552 8.272279451 8.525071801 86160520 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 8.621100311 8.615499058 8.618718038 8.312413489 8.461929713 8.241781739 8.146428002 8.69613607 8.383444204 8.797902632 8.62072997 8.540538072 160917463 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.707845762 8.633313412 8.513195392 8.868352738 8.809438617 8.686577062 8.77534119 9.163849484 8.859519287 8.890521319 8.602406984 8.712935225 113866947 nagG Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 9.147825273 9.441300206 9.226893055 8.500062375 8.428235106 8.654604459 9.050535664 8.562651501 9.321815316 8.744002961 8.663421258 8.672487901 161380409 mer Metal Resistance Mercury Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 8.839240948 9.091102083 8.973966403 8.298581004 9.118208784 9.206824129 9.344149855 7.86517756 8.959984779 8.373174887 8.747707546 8.74991525 183984965 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 8.538041866 8.365805487 8.699976435 7.956094682 7.978996658 8.020393263 8.016308989 8.005257002 8.544195375 8.185857493 7.927171138 8.157515569 88780561 FTHFS Carbon cycling Acetogenesis Polaribacter irgensii 23-P superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Polaribacter;species:Polaribacter irgensii; 8.615255007 8.53137381 8.52792848 8.282607341 8.476009571 8.318790644 8.421991917 8.622112675 9.051096969 8.819693063 8.738762811 120402609 glnA Stress Nitrogen limitation Mycobacterium vanbaalenii PYR-1 8.605595247 8.412020422 8.263588632 8.157331126 8.054442527 8.203561794 8.337713844 8.180310703 8.481055222 8.161579179 8.198410987 8.222679787 38373201 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.16073815 8.401805368 8.319688994 8.286533943 8.463529792 8.640942498 8.590503261 8.552417757 8.210159419 8.18358522 149919796 trzN Organic Remediation Herbicides related compound Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 9.294308205 9.457937175 9.244697949 9.630824988 9.555883644 9.058267195 9.751248144 9.594175942 9.449324001 9.632435923 9.453637751 9.17886906 91692048 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 9.657153987 9.585274831 9.566850254 9.282042921 9.257257944 9.151830276 9.335512283 9.510624506 9.749918195 9.538917594 9.374484082 9.379833646 76558027 pstB Stress Phosphate limitation Natronomonas pharaonis DSM 2160 8.310349595 8.163584894 7.367189754 7.550298655 7.921040456 7.781261503 7.480610621 7.472991597 7.648347026 7.665147705 182636192 pstC Stress Phosphate limitation Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 7.137210629 7.17887232 7.439016675 7.070583779 7.577152407 118616737 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 8.576913847 8.456796667 8.590823574 7.710415919 7.850089414 8.060983443 8.01088177 7.596076199 8.184720493 7.940167449 8.064229129 7.939172094 134288296 gyrB other category gyrB Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 8.364328734 8.140499005 7.954582554 8.213714937 7.765742092 8.281645586 8.395056255 8.24259639 8.125652734 8.187932756 8.110821046 84702674 linB Organic Remediation Pesticides related compound Parvularcula bermudensis HTCC2503 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 8.528766246 8.51460017 8.551806771 7.832439509 8.056941601 8.347803219 7.523443575 7.880258339 7.810586152 7.991111844 66843927 nagI Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 8.47175027 8.382449368 8.494383938 8.384659441 8.245502128 8.016988316 8.276081018 8.405344292 8.414868782 8.699751213 8.345419019 61611861 xylF Organic Remediation Aromatics BTEX and related aromatics Delftia tsuruhatensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia; 8.750822277 8.719759324 8.320207494 8.176564724 8.109119651 8.468792828 8.191884678 8.427788575 8.29631026 8.161469663 8.397628042 239815297 pstB Stress Phosphate limitation Variovorax paradoxus S110 8.951127151 9.054048753 8.953732165 8.82171801 9.357032847 9.489767735 9.249169411 9.743723711 9.153907843 9.087667026 9.361594962 9.230910555 118049029 ChrA Metal Resistance Chromium Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.36629551 8.469944757 8.545242927 7.959160763 7.992735947 7.860413071 8.007372516 8.257766733 8.341868711 8.372131333 8.053881323 8.308689173 126436778 xylG Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 9.55716404 9.522402071 9.80109478 9.154490357 8.951158832 8.722300033 8.983029288 8.876097524 8.953072063 8.815440458 8.856707821 9.124285317 119951007 gyrB other category gyrB Arthrobacter aurescens TC1 9.677476267 9.566805389 9.886686869 9.326661591 9.134250458 9.10953364 9.159197211 9.147221242 8.974260505 9.21663589 9.275510047 9.512880493 32307981 narG Nitrogen Denitrification uncultured bacterium 8.909581161 9.022182904 8.780487208 9.002306783 9.369091027 9.166901707 9.174504914 9.58145353 9.18428891 9.491330591 9.622127196 9.697749252 26453461 gyrB other category gyrB Mycoplasma penetrans HF-2 superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Mycoplasmatales;family:Mycoplasmataceae;genus:Mycoplasma;species:Mycoplasma penetrans; 9.015420279 9.032089398 9.299645296 8.771782541 8.448315344 8.484640347 8.165722864 8.266973059 8.216746133 8.207326997 8.593270099 118171750 gyrB other category gyrB Mycobacterium smegmatis str. MC2 155 8.039384322 7.947733209 8.16135015 8.509819632 8.245167238 8.299911326 8.378746952 8.026436627 8.132578667 7.939940427 8.116555382 8.241479532 270737035 obgE Stress Radiation stress Desulfovibrio aespoeensis Aspo-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio aespoeensis; 9.009709537 8.630029369 8.780046492 8.622162475 8.607194727 8.529172718 8.776197484 8.656444138 8.495328054 8.861914738 8.970884363 8.494449842 257797304 arsM Metal Resistance Arsenic Desulfohalobium retbaense DSM 5692 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium;species:Desulfohalobium retbaense; 9.912880735 9.690370228 9.810192114 9.499537934 9.303907943 9.0876517 9.471976772 9.308020125 9.589617607 9.551789354 9.525698139 9.341761874 72384275 Catechol Organic Remediation Aromatics Other aromatics Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.812427984 8.525052118 8.738990389 8.197992201 8.382088186 8.17540026 7.811880889 7.66524461 8.141204505 213962414 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Capnocytophaga sputigena Capno superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga sputigena; 8.425881345 8.371480667 8.87652886 9.007318587 8.602472972 8.584307978 8.373162817 8.538223431 8.899009571 9.117545954 35211126 mer Metal Resistance Mercury Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 8.635106298 8.651105568 8.774309047 8.277829188 8.284060442 8.078538706 8.088596644 7.951785193 8.297690626 7.904137175 7.998108115 8.209775131 17228103 NiR Nitrogen Assimilatory N reduction Nostoc sp. PCC 7120 8.57869732 8.522965077 8.221161798 7.843551164 7.753919433 7.750406306 8.007201086 7.738117728 8.25175101 7.610724363 7.858418928 7.780780187 170027477 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 8.028874246 7.83391846 7.695626533 7.393158717 8.051957382 8.031481146 7.945335136 7.927387897 8.025325824 197214048 dmsA Organic Remediation Others Salmonella enterica subsp. enterica serovar Agona str. SL483 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 8.100536607 7.922606621 8.100357683 8.220725936 8.061126042 7.905949513 7.981580668 8.1510167 8.292179526 8.236854544 7.74254974 8.005644721 170734622 mdlD Organic Remediation Aromatics Other aromatics Burkholderia cenocepacia MC0-3 8.882431084 8.80988673 8.458153701 8.940829118 8.600934666 8.134971515 9.049260208 8.785793832 9.010605838 8.908531282 8.677743256 8.391685712 127511281 cytochrome Energy process Energy process Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 7.859527993 7.928757467 7.046193533 7.176430145 6.948946577 6.697336152 7.508821404 7.058081561 7.061200528 27359882 amyA Carbon cycling Carbon degradation Starch Vibrio vulnificus CMCP6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 8.450092508 8.548093488 8.822612376 7.977746456 8.048749753 7.896342456 7.776602023 7.732248565 7.999768088 7.740624335 7.603695535 7.94130398 157145830 dmsA Organic Remediation Others Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 10.8226945 10.58038772 10.58801325 10.14399848 10.62531021 10.46451858 10.75604533 9.728185336 10.90310511 9.940220153 9.862641316 10.0776048 224370245 narI Stress Oxygen limitation Desulfobacterium autotrophicum HRM2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium;species:Desulfobacterium autotrophicum; 8.235125326 7.821504459 8.276999304 7.933836352 7.613749272 7.423912529 7.806263169 7.635796163 8.008612339 7.662352977 7.14072563 7.475577438 108466208 sigma_24 Stress Sigma factors Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 7.605640452 7.439812327 7.303738958 6.919288424 7.358357735 7.12730432 7.192728267 7.144352904 219547139 pstB Stress Phosphate limitation Methanosphaerula palustris E1-9c 8.413727483 8.246380688 8.487902486 8.098008646 7.942810987 8.038538669 8.165062969 7.913980404 8.070565092 7.926839886 8.014113142 221311877 katE Stress Oxygen stress Bacillus subtilis subsp. subtilis str. 168 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 8.652649201 8.468115508 8.680388068 8.435068708 8.284997936 8.485719566 7.969104487 8.274839864 8.174980518 8.284553032 8.2341838 8.578518444 91686245 vanA Carbon cycling Carbon degradation Others Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.563126239 8.483705032 8.097285085 8.017857747 8.142111234 8.36928695 7.863913111 8.53398863 8.204175205 8.422317685 8.107812095 114798897 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 8.181628687 8.837903029 8.440852739 8.313299531 8.20000308 7.854276405 8.083704914 8.624186705 8.850405186 8.326980333 8.104638858 8.247807459 118731814 pcc Carbon cycling Carbon fixation Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.201601131 8.219565098 8.439885562 8.064702182 8.368079593 8.185057875 7.98916801 8.165826318 7.771157981 7.847886173 7.753852739 37496843 amoA Nitrogen Nitrification superkingdom:Bacteria; 8.395199526 8.061122067 8.112980984 7.878270198 7.800762569 7.633122978 7.773719153 7.880578335 8.003303473 7.538695648 7.462818884 7.796435047 29892861 alkJ Organic Remediation Other Hydrocarbons Rhodococcus ruber superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.299424817 7.967092101 7.87477103 8.581007617 8.097935121 8.023969167 7.717455497 7.907737828 8.244966775 7.950226806 85829930 nmoA Organic Remediation Aromatics Nitoaromatics Leeuwenhoekiella blandensis MED217 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Leeuwenhoekiella;species:Leeuwenhoekiella blandensis; 7.553025756 7.605793198 7.25792518 7.396676771 7.613604456 91697231 phtA Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 8.657683861 8.670611441 8.889478736 8.561814152 8.251872694 8.501355281 8.495881948 8.709904194 8.511625145 8.908039217 8.642872697 8.77455544 239906660 pstB Stress Phosphate limitation Desulfovibrio magneticus RS-1 9.976089001 9.719304868 9.825122249 9.597392453 9.575902671 9.361651964 9.418128734 9.403312878 9.699349511 9.687063021 9.72161913 9.735169635 68447326 glnR Stress Nitrogen limitation Staphylococcus haemolyticus JCSC1435 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus haemolyticus; 8.185464542 7.900131381 8.388242337 7.334456875 7.504883965 7.566123955 7.720505805 6.679827701 7.075258159 7.342924212 7.671304513 214043481 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.422076577 8.197081116 8.366440119 7.729707496 7.790215355 7.720241341 8.033733855 8.04718784 7.682668692 7.808156334 7.990549088 209966919 alkK Organic Remediation Others Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 8.651096565 8.227007537 8.511910804 8.360582145 8.191665454 8.286345733 7.841352221 7.994459119 8.242314518 7.950858337 7.961171458 8.250655697 41222509 nasA Nitrogen Assimilatory N reduction Haloferax mediterranei superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax; 8.957740618 8.561239796 8.315337239 8.950839845 8.595920064 8.470579298 8.79569388 8.61621983 8.567977613 8.361167651 8.383436219 8.344143236 212224804 atzA Organic Remediation Herbicides related compound Thermococcus onnurineus NA1 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus onnurineus; 8.615426784 8.709543518 8.661672054 8.576689209 8.324602477 8.152485866 8.689136101 8.343814499 8.492469786 8.576186991 8.176916683 257483212 katE Stress Oxygen stress Pseudomonas syringae pv. tabaci ATCC 11528 8.60887117 8.556378879 8.702104282 8.323527504 7.993675859 8.241482167 8.271936283 8.207808391 8.252626492 8.241812841 8.238136265 8.287012101 228005890 AceA Carbon cycling Carbon degradation others Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 9.504365718 9.431997466 9.395936057 9.341319243 9.211473978 8.972364774 9.155368089 9.458283447 9.385493302 9.399834986 9.339178533 9.374121906 172041128 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium urealyticum; 8.206237983 8.386615557 8.230616737 8.01959854 7.702199369 7.933000939 8.099152911 7.883965545 7.738020383 7.76624508 7.524679735 118666819 nagI Organic Remediation Aromatics Aromatic carboxylic acid Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 9.333543384 9.073287668 8.829469434 9.350777926 9.227777634 8.970860058 9.395515951 9.175231887 9.264845224 9.288595712 8.926761028 9.211518935 87331844 cumA Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 8.414817028 8.321558294 7.999299159 8.282094315 8.007626626 8.009241901 7.81545399 7.960582357 8.349516911 8.211852472 8.394556583 8.10025742 119539150 atzD Organic Remediation Herbicides related compound Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 9.271085698 8.926871336 9.191560501 8.907108515 8.850195756 8.6969546 8.554198715 8.700132146 8.703489635 8.605557607 8.869106749 8.899144196 116621439 sigma_24 Stress Sigma factors Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 10.25562285 10.25021151 10.10084681 9.738375612 9.879335762 9.630245335 10.14549342 9.81549118 9.603916893 9.735242036 9.762947791 9.681193807 42523748 ZntA Metal Resistance Zinc Bdellovibrio bacteriovorus HD100 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 8.443697276 8.403108804 8.096417277 7.843774397 8.230911898 8.163254585 8.320588341 7.730042002 7.976661324 8.048953295 156523540 todC Organic Remediation Aromatics BTEX and related aromatics uncultured bacterium 9.114392736 8.876486918 9.028723517 9.454900146 9.41652549 9.070240172 8.828915585 9.337513951 8.906513929 9.081120392 8.936560122 9.159282669 84694773 benAB Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 7.267043683 7.634169613 7.825101824 7.840709409 7.744676129 8.027597062 7.514959819 7.423636971 7.710509272 157406237 sox Sulphur Sulphur oxidation Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 10.14486843 10.180134 10.15550673 10.43556928 10.19997743 9.910582281 10.34355638 10.49469951 10.48932438 10.47524226 10.19618163 10.32029123 89343698 phn Organic Remediation Herbicides related compound Rhodoferax ferrireducens DSM 15236 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 9.024027994 9.070482451 8.57512816 8.774150642 8.922970746 8.952611814 8.677227702 8.816173231 8.817148111 8.861033182 9.069902968 8.683372503 497884 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.648233384 8.559408377 8.693365016 8.237835376 8.101986642 8.237865603 8.121160102 8.270436224 8.067652498 8.235636384 8.086318908 8.470277359 68184737 mcrA Carbon cycling Methane Methane production Methanococcoides burtonii DSM 6242 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanococcoides;species:Methanococcoides burtonii; 8.521355619 8.362869003 8.758679986 7.880302357 7.715619459 7.904425484 8.327521635 7.954779979 8.649597585 7.654846022 7.604599407 7.934405288 160917441 narG Nitrogen Denitrification uncultured bacterium 8.166910045 8.1384585 8.257125592 7.970808035 7.618022768 7.850402437 7.882470466 7.772759662 8.305380675 7.746883326 7.776976192 7.864990029 133914064 NirB Nitrogen Assimilatory N reduction Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 8.218595909 8.211269007 7.901237378 8.46326046 8.650778204 7.79038882 8.186838802 8.039290354 8.061375589 8.510904989 8.068486188 81251126 ureC Nitrogen Ammonification Nitrosospira sp. NIJS16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira; 8.189756881 8.156897759 7.666289173 7.643159502 7.838159025 7.553785824 7.182076384 7.905744628 7.574413714 7.524047506 7.675528899 56798375 catechol_B Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 9.093532095 8.819476139 8.882942265 8.437236444 8.436235528 8.355462062 8.193581484 8.82228478 8.863830802 8.831258386 8.892125974 9.018942069 92908605 endochitinase Carbon cycling Carbon degradation Chitin Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.758270117 8.446211758 8.622808803 8.472728404 8.267364708 8.399894935 8.291521843 8.505673372 8.013630432 8.299099926 8.445523058 8.368719308 254524696 glnA Stress Nitrogen limitation Stenotrophomonas sp. SKA14 8.059612922 8.013234262 8.154248165 7.9636138 7.996273549 7.935965237 7.519573069 7.78557582 8.203369789 7.86418578 7.61607875 7.685667046 146409397 exaA Organic Remediation Chlorinated solvents Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.366277126 8.394712916 8.713117015 8.179393391 8.179338038 8.170170007 7.656451052 7.736484595 8.005102664 8.226251799 8.03582339 8.021887807 254406691 ara Carbon cycling Carbon degradation Hemicellulose Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 8.529515211 8.653643585 8.245470271 8.662143089 8.618384503 8.305185064 8.845964971 8.694244007 8.561962095 8.613392793 8.763639951 8.340936476 120561770 tutFDG Organic Remediation Aromatics BTEX and related aromatics Desulfovibrio vulgaris subsp. vulgaris DP4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 8.35476151 8.293650908 7.97758859 8.178463994 8.138747778 8.51706861 8.286098397 8.564127791 7.932557968 8.073493443 8.078401945 5453455 lip Carbon cycling Carbon degradation Lignin Ceriporiopsis subvermispora 8.529827128 8.367290077 8.486929393 8.14896363 8.219683078 8.285972494 8.652405253 7.856845571 8.141624466 8.032793816 7.937004954 220934691 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 8.653917139 8.435088323 8.55866027 8.079539757 8.06299258 8.117335215 7.852231339 8.056796895 8.026354136 8.216572357 8.322856252 8.353597418 256424087 B_lactamase_C Antibiotic resistance Beta-lactamases Chitinophaga pinensis DSM 2588 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 8.224390132 8.086033179 8.068762446 7.46793262 7.468165233 7.575607779 7.245402092 6.882812699 7.811427209 7.330693947 7.464796898 7.601682464 162450263 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 8.528719406 8.772060025 8.364231913 8.201298585 8.191808821 8.023288654 8.542439293 8.319753412 8.59824522 8.70352804 8.657019773 119535719 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 9.381142818 9.421323324 9.44730964 8.995574637 8.871800999 8.856996733 8.77170565 8.678102524 8.615783094 8.833921473 8.800952988 8.995647917 63081872 nosZ Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 8.765903019 8.875559546 8.512350231 8.523897209 8.617027152 8.894621159 9.276940987 8.747610615 8.756663678 8.555949527 8.700423981 8.279568031 119512308 sigma_70 Stress Sigma factors Nodularia spumigena CCY9414 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nodularia;species:Nodularia spumigena; 8.319954858 8.132319412 7.576649885 7.424327808 7.545513191 7.140852854 7.351333181 7.663977465 7.370833441 7.574640098 7.552842496 120593713 pimF Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8.9137296 8.382147825 8.537957261 9.24099843 9.065270274 8.889769529 9.185134294 8.984096061 8.818373224 8.859244021 8.813345206 8.660060233 216853 nhh Organic Remediation Aromatics Nitoaromatics Pseudomonas chlororaphis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas chlororaphis; 8.859534115 8.574362271 8.376964116 8.900051673 8.958946442 8.814169699 8.910319296 8.721811394 8.709471887 8.951604602 9.000393581 8.425340829 71556602 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 8.648323404 8.247398878 8.595739319 8.475912613 8.376901227 8.36488494 7.995021094 8.123884796 8.082143072 8.263104084 8.21789771 8.098641671 8248776 TerD Metal Resistance Tellurium Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 9.41564362 9.497769707 8.916833274 9.313927615 8.3648548 8.86977777 9.586257665 9.259812719 9.131247549 8.557216354 8.638754786 8.920353898 63258768 ZntA Metal Resistance Zinc Pseudomonas syringae pv. syringae B728a 8.410442912 8.021698193 8.042232964 8.071721959 7.592586004 8.036650952 8.174740165 7.905934718 7.934435028 8.16536023 62149130 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.633287843 8.616842973 8.721769453 8.22792734 8.141842124 8.0725869 7.912233349 7.861023496 8.243387798 7.960886814 7.898192839 8.210624923 154687730 ChrA Metal Resistance Chromium Bacillus amyloliquefaciens FZB42 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 8.307091497 8.296957531 8.393540084 7.841298914 7.687799149 7.981898742 7.882254069 7.660255678 7.95192853 7.636992502 7.584664397 7.915958736 207724399 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia solanacearum MolK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 8.324770994 8.478437136 8.368018673 8.438567252 8.226092048 8.612168204 8.52742239 8.424476829 8.518702264 8.581209121 8.060984301 206678112 phoB Stress Phosphate limitation Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.155571319 8.059158531 8.416640883 8.526244868 8.536394669 8.181814921 8.646293415 8.474090932 8.240852025 8.214213821 8.002424738 146280493 cytochrome Energy process Energy process Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 8.448402403 8.183245853 7.493741857 7.711023916 8.192187207 8.311015332 7.036327509 8.444517591 7.687102562 7.604998403 7.803917755 240861504 fnr Stress Oxygen stress Rhizobium leguminosarum bv. trifolii WSM1325 8.977975197 8.982192863 8.731980772 8.65233671 9.038218506 9.129832218 9.08189438 9.531792188 8.988647413 9.258015186 9.469922249 9.359285115 168699382 sigma_24 Stress Sigma factors Gemmata obscuriglobus UQM 2246 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata;species:Gemmata obscuriglobus; 9.471371583 9.359616027 9.346644838 10.20394437 10.09813389 9.947223061 27355530 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 10.17347875 10.06269508 10.09488845 9.110427632 9.252575549 9.12245877 9.279276052 9.14505155 9.390619504 9.391643289 9.477223431 9.456107709 148507549 bphF1 Organic Remediation Aromatics Polycyclic aromatics Mycobacterium tuberculosis H37Ra 7.989852238 7.968662474 7.982559794 7.42439059 8.062643184 7.880274335 7.918852809 8.120477458 7.541113484 262335420 sigma_24 Stress Sigma factors Rhodothermus marinus DSM 4252 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 9.157773211 9.13946557 9.01362323 8.708721383 8.181814552 8.795510964 8.800123037 8.116179503 8.976505736 8.852529029 8.912742612 8.753079468 240104110 pstB Stress Phosphate limitation Thermococcus gammatolerans EJ3 9.511074699 9.419384143 9.094447777 9.061393781 8.967246236 8.687410293 8.430781328 8.288718852 8.681721583 8.817721097 9.073935098 147886004 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 8.613004851 8.667151265 8.402443473 8.808584237 8.39292012 7.993097845 8.539925985 8.639684157 8.512355156 8.541986391 8.46588813 8.292504447 192808890 TehB Metal Resistance Tellurium Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 9.304941273 9.17711207 9.126267206 8.97781817 8.867528311 8.890806646 8.640709318 8.791245938 8.700583276 8.829280829 8.731639305 9.209986631 167587283 SMR_antibiotics Antibiotic resistance transporter Burkholderia ubonensis Bu 7.524125359 7.243951513 7.576602567 7.56795408 7.686162109 7.54523284 7.707744063 134301063 fnr Stress Oxygen stress Desulfotomaculum reducens MI-1 9.257105134 8.974857725 9.152366895 8.481851194 8.257627451 8.347361226 8.293861714 8.020203058 8.406075167 8.215119706 8.083005987 8.600579898 219966279 nirS Nitrogen Denitrification Pseudomonas sp. R-31815 8.309941662 8.370166658 8.245361996 7.916635126 7.961601835 7.969006234 7.860251854 8.023444345 8.070633328 8.054438961 7.928715528 7.743066916 15158677 pcaG Organic Remediation Aromatics Other aromatics Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.161065126 8.046971203 7.642571449 8.152240032 7.835347563 7.728095492 7.863254346 111020408 katE Stress Oxygen stress Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 10.10973504 9.830415262 9.559497026 9.738582949 9.709476086 9.591761918 9.677555766 9.817317633 9.828299988 9.879515669 10.27144566 9.933408408 86556078 nirA Nitrogen Assimilatory N reduction Synechococcus sp. JA-2-3B'a(2-13) 8.366497462 8.681540028 8.220035396 7.950271094 8.164363111 8.298900092 8.262469721 8.005625767 8.276265226 8.072819625 8.000953631 8.447320629 13424093 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 8.161256783 8.548774573 8.540860742 8.512884984 8.229570159 8.740286135 8.544815432 8.434636384 8.465166654 8.601940951 8.279088551 238722057 pap virulence adhesin Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 9.335145822 9.400676301 9.34808525 8.917814096 8.825716314 8.742372658 8.582529679 8.539310432 8.415667607 8.626419086 8.611564884 8.914817081 258594429 pstA Stress Phosphate limitation Desulfurivibrio alkaliphilus AHT2 9.974573447 9.821826697 9.933525125 8.834891282 8.823329527 8.814318071 8.694100178 8.826577342 8.973138434 8.910755473 9.166955448 9.212986242 86160275 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 8.373340402 8.389797896 8.248464293 7.949664834 7.940870831 7.957250109 8.063724539 7.807558094 7.86561368 8.074449658 8.017657087 7.8935087 78093546 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.779949564 9.721378158 9.90830734 9.201936625 9.801845802 9.871399917 10.14608912 8.860451111 10.33704703 9.517378456 9.572634774 9.611913207 196203100 mer Metal Resistance Mercury Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.583012809 8.592353928 8.776341916 8.155110629 8.30969351 8.34962156 8.121981006 8.126244485 8.026475481 8.148168173 8.104228647 8.137655817 189335366 xylC Organic Remediation Aromatics BTEX and related aromatics Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 10.29311859 10.19057013 10.40050651 9.571259843 9.614848376 9.573276457 10.00761314 9.391960618 10.18108567 9.671735212 9.762001021 9.782590172 169829252 ChrA Metal Resistance Chromium Lysinibacillus sphaericus C3-41 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Lysinibacillus;species:Lysinibacillus sphaericus; 8.326893463 8.30648277 8.27676851 7.573849655 7.69911614 7.683890077 7.197111671 7.966147858 7.436408549 7.541319722 7.832748667 268318317 katE Stress Oxygen stress Rhodothermus marinus DSM 4252 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 8.472898105 8.586287535 8.190957435 7.888184585 7.845881945 7.952572093 8.04897202 7.872749313 8.310557252 8.041865717 7.998657683 8.031466424 160366110 alkH Organic Remediation Other Hydrocarbons Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.542824619 8.627515368 9.001696846 8.620661714 8.629791272 8.305058391 8.632330544 8.438322887 8.293551339 8.485840816 8.2821366 8.420929324 224817502 APS_AprB Sulphur adenylylsulfate reductase Thioalkalivibrio sp. K90mix superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 10.07974563 9.374221039 9.429794637 8.679950713 8.580357041 8.688570595 8.955567106 8.370159776 9.07245864 8.745879637 8.654146192 8.79581737 87331876 cumA Organic Remediation Aromatics Other aromatics uncultured bacterium 9.96455171 9.964616609 9.918242908 9.459052874 9.546603754 9.24294436 9.729390155 9.820886075 9.615267475 9.624573627 9.730090393 9.84531095 3170517 nahA Organic Remediation Aromatics Polycyclic aromatics Neptunomonas naphthovorans 7.580589167 7.313871271 7.434952211 7.028334629 7.733574472 7.469661984 7.582207405 7.41381222 26278740 narG Nitrogen Denitrification uncultured bacterium 9.059039399 9.226520436 9.154126807 9.235104039 9.471457204 9.207159944 9.304941868 9.695438536 9.424284891 9.642873079 9.326112042 9.405950374 120605814 CadA Metal Resistance Cadmium Acidovorax sp. JS42 8.232242353 7.902657899 7.793181789 7.798698571 7.827250643 7.89020482 7.631181782 8.021536965 8.274605593 8.075637862 8.025774378 82401174 atzA Organic Remediation Herbicides related compound Caldicellulosiruptor saccharolyticus DSM 8903 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Caldicellulosiruptor;species:Caldicellulosiruptor saccharolyticus; 8.198188873 7.9808178 8.290977493 7.228574011 6.79605415 6.969696892 7.074965944 7.073879768 14389267 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.310834963 8.127604623 8.377988671 8.265017566 8.23247547 8.173662 8.339441333 8.332412399 8.381731676 8.107237576 8.124558882 8.164750607 219952384 CadA Metal Resistance Cadmium Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 9.557501671 9.560120001 9.431323593 8.582009152 8.560182271 8.526962952 197788644 nagG Organic Remediation Aromatics Aromatic carboxylic acid Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 10.08052974 10.35726383 10.26691673 10.26947941 10.20009694 10.06585712 154245468 sox Sulphur Sulphur oxidation Xanthobacter autotrophicus Py2 9.071964094 8.525045391 8.493666417 9.095913758 9.088941119 8.838220603 8.967642553 9.123684875 9.010478207 8.909922378 9.046416732 8.610952389 270281396 SMR_antibiotics Antibiotic resistance transporter Pediococcus acidilactici 7_4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Pediococcus;species:Pediococcus acidilactici; 8.267041718 8.269557517 8.498729504 8.015847607 8.032079596 7.707382596 7.755402058 7.789719225 7.974844218 8.035768107 7.867683698 8.06611383 113867726 qorL Organic Remediation Aromatics Polycyclic aromatics Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.472683528 8.097787188 8.496660203 8.236591502 8.26899638 8.018781147 7.964855497 8.041192517 8.14474369 8.015101651 7.931605346 8.124160502 149812609 phn Organic Remediation Herbicides related compound Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 9.973427442 9.898614473 9.775688645 9.093083255 9.051484893 9.110382845 9.273063059 8.57948692 9.477660265 9.202187111 9.223713938 9.160022687 109899620 pstB Stress Phosphate limitation Pseudoalteromonas atlantica T6c 8.676624062 8.741563036 8.924619225 8.009936432 7.820866469 8.161714231 7.326811661 7.81271106 7.576558542 7.821048413 8.26094419 118619447 katE Stress Oxygen stress Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 8.055086058 8.13590937 7.924677922 7.622801392 7.76282943 8.04590217 7.761792452 7.730839646 7.781462503 7.950698793 7.79836389 7.554552577 115315696 Catechol Organic Remediation Aromatics Other aromatics Pseudomonas sp. MT1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.707571684 8.567774375 8.496567587 8.711923723 8.864786722 8.904775024 8.625422 9.010948489 8.797278232 8.72882285 8.937864313 8.645571797 116293941 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.381322388 7.890123944 7.379476265 7.369072965 7.295486849 6.923273108 6.960651425 7.576878259 7.196299802 7.109233782 7.278900508 258634420 glnA Stress Nitrogen limitation Pantoea sp. At-9b 8.065596346 8.067974917 8.245524383 7.520448856 7.402747721 7.266242005 7.31421249 7.92239861 7.610798164 7.552321201 7.501482329 7.480302489 148519778 catB Organic Remediation Aromatics BTEX and related aromatics Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 8.237248169 8.290125633 8.494561283 8.621732428 8.545989025 8.217741368 8.269761948 8.53889288 8.324217152 8.319717037 8.1310331 7.79267029 221533468 chnB Organic Remediation Other Hydrocarbons Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 8.767736128 8.464083696 8.575054203 8.699999121 8.343327149 8.318358154 8.49081972 8.361038626 8.470218348 74484325 todC Organic Remediation Aromatics BTEX and related aromatics Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.93846205 8.794803447 8.65527468 8.849645959 8.844179838 8.399054505 9.024453565 8.252058013 8.866294127 9.21149608 9.050972846 115353435 endochitinase Carbon cycling Carbon degradation Chitin Chaetomium globosum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium; 8.64902953 9.094411738 9.334356024 9.480830727 9.58906276 8.954899945 9.336466416 10.05028072 9.126199962 9.625379561 9.329972999 9.764699718 108463770 ppx Phosphorus Phosphorus utilization Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 8.710133419 8.286217669 8.473455477 8.573758075 8.660043164 8.431914065 8.737674524 8.490888501 8.451177247 8.215828593 8.287243947 7.912875293 223481089 Arylest Organic Remediation Aromatics Other aromatics Alcanivorax sp. DG881 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 8.319954858 8.392794197 8.278421425 8.214647523 8.070273808 8.248638484 8.338315316 8.3061354 8.571843407 8.267019171 8.154946619 160345367 ophC Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 9.364024758 9.060332876 9.232524499 8.661469086 8.56478862 8.557817063 8.375557774 8.401787733 8.450709257 8.485102909 8.144432334 8.71283601 160901326 iro virulence Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.837058638 9.045201649 9.551617366 9.088772014 9.130039169 8.770449161 8.968188037 9.488884859 8.779577918 9.145873198 9.139415989 9.514343992 183177725 linB Organic Remediation Pesticides related compound Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 8.14123194 8.261397062 8.164477404 7.543882245 7.573455661 7.988069024 8.001554707 7.616788744 8.143767557 7.753783581 7.536768594 7.888395655 90417855 sox Sulphur Sulphur oxidation Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 7.93137966 7.733593136 7.929639321 7.677848725 7.50476497 7.018181078 7.568016614 7.417874308 7.643681462 7.289900479 7.753318232 211905653 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.823480266 8.689783901 9.024122923 8.115617504 8.278561755 8.083228192 8.083434609 8.564813992 8.324335135 8.741403204 8.99405556 8.749739582 94313373 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.072296004 8.34181924 8.104294654 8.176844512 7.930745695 8.062353556 8.29517261 8.080766168 8.424434596 8.006145765 8.291749462 83942278 nagG Organic Remediation Aromatics Aromatic carboxylic acid Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 8.595447107 8.750650762 8.781453563 9.115493106 9.172357081 9.018231414 8.910270532 9.488553216 8.896751241 9.151975876 9.148108187 9.186775671 269127805 amyA Carbon cycling Carbon degradation Starch Thermomonospora curvata DSM 43183 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora;species:Thermomonospora curvata; 8.503041767 8.644238505 8.702782851 8.018703894 8.213869674 8.546728498 8.565474445 8.278349706 8.301926141 8.249708892 8.441690251 255920336 sigma_70 Stress Sigma factors Actinosynnema mirum DSM 43827 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinosynnemataceae;genus:Actinosynnema;species:Actinosynnema mirum; 8.621626754 8.219100951 8.327677084 7.915414366 7.986066576 8.101114382 8.098317173 8.041784535 8.200963164 8.108428878 8.278851783 7.917554334 260655819 hly virulence hemolysin Jonquetella anthropi E3_33 E1 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Jonquetella;species:Jonquetella anthropi; 9.43436222 9.373764977 9.527607863 8.92209664 8.818206862 8.707180802 8.720634663 8.793689226 8.659069047 8.648853245 8.514831783 8.956246746 188506427 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.32675019 8.716675719 8.692932627 8.670470815 8.729456195 8.582883329 8.651629504 8.655113804 8.607076206 8.549245064 8.771326444 8.494846556 50951877 phoB Stress Phosphate limitation Leifsonia xyli subsp. xyli str. CTCB07 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Leifsonia;species:Leifsonia xyli; 9.391534951 9.778849782 9.539071731 9.976302166 9.857058558 9.507054846 10.0638309 10.04983755 9.541065069 9.922698662 9.75871176 9.427203105 169155044 srt virulence surface protein Clavibacter michiganensis subsp. sepedonicus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 8.427221269 8.6348643 8.53004005 9.181218553 9.038694308 8.770955316 8.86697678 9.017943899 8.718375884 9.014687255 8.751841227 8.539431721 242804264 AceA Carbon cycling Carbon degradation others Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 8.307237589 8.337154419 8.61526881 7.822464774 7.622657369 7.594791722 7.438081864 7.490664774 7.835007097 7.564975501 7.852501926 41349577 narG Nitrogen Denitrification Haloferax mediterranei superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax; 8.711733626 8.522071195 8.873871266 8.582167339 8.327311408 8.189043431 8.229053653 8.689119792 8.560310353 8.586717575 8.220652497 8.443063282 256592349 obgE Stress Radiation stress Cyanothece sp. PCC 8802 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.291352616 8.259798911 8.611342245 7.89105717 7.878934691 7.809911565 7.797332188 8.00065326 8.088001728 8.060503129 7.682405099 7.866820077 206576010 mhpB Organic Remediation Aromatics Aromatic carboxylic acid Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 10.58311843 10.3122471 10.06590653 9.493560836 9.946940907 10.03048183 9.482552455 10.44411472 10.09977127 10.10474925 10.02447997 261878385 obgE Stress Radiation stress Selenomonas noxia ATCC 43541 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas noxia; 8.818328765 8.614953851 8.969536644 8.295667585 8.126119953 8.208329477 8.439486422 8.636910792 8.700423293 8.311423855 8.473457803 104782200 benD Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 9.406451434 9.819802979 9.71308433 9.621485759 9.699205197 9.5778241 9.85156531 10.222652 9.984113589 10.28359413 10.05821817 9.972042604 196208877 ChrA Metal Resistance Chromium Cyanothece sp. PCC 8802 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.112832462 8.120707917 7.327126921 7.62263893 7.775086406 7.709350224 7.871192737 7.987542773 7.959431872 7.816881565 7.769695886 124111051 tutFDG Organic Remediation Aromatics BTEX and related aromatics uncultured bacterium superkingdom:Bacteria; 8.544377945 8.608561021 8.37243608 8.417112443 8.481235553 8.403567538 8.398241114 8.84865227 8.562281216 8.772465709 8.583356741 8.548251262 184195643 MFS_antibiotic Antibiotic resistance transporter Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.635919943 8.522877737 8.450467012 8.704264957 8.78187421 8.546342205 8.852902744 8.808825402 8.743113625 8.639855572 8.517438139 8.248526449 148835875 mer Metal Resistance Mercury Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 8.626465814 8.538271255 8.591643328 8.637576753 8.770943135 8.038972938 8.560325143 8.331332716 8.64262352 8.997763009 8.429537905 258560133 glnA Stress Nitrogen limitation Corynebacterium genitalium ATCC 33030 8.307227838 8.05970316 8.17557868 8.579385099 8.623147894 8.226944368 8.557106459 8.661743369 8.076275765 118717078 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 9.163238079 9.040364255 9.002956303 8.774868958 8.521394053 8.55473559 8.545658137 8.786314253 8.741548709 8.894360852 8.659736599 8.682489165 113898055 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 9.063591789 8.97836588 9.056973775 8.522088006 8.411600218 8.382178954 8.104852708 7.7823577 8.276606757 8.239261242 8.254388109 8.64793916 121593432 gyrB other category gyrB Acidovorax sp. JS42 8.565777178 8.331557048 8.104354653 8.755229695 8.546609149 8.344910362 8.659655353 8.901626005 8.527879865 8.742274981 8.642433004 8.2488621 167578268 CopA Metal Resistance Copper Burkholderia thailandensis TXDOH superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 8.960420425 8.932043164 8.61973182 8.720044786 8.510075961 8.344442798 8.511295552 8.373615425 8.355741221 8.384219395 8.112822654 2921168 hrcA Stress Heat shock Streptomyces albus G superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces albus; 8.615949099 8.05673078 8.409312885 8.334307018 8.023288629 7.986045801 8.228513822 8.24365638 8.346339553 7.904625349 7.865380345 7.552244967 261857085 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.59690024 9.407247044 9.167209023 8.94764936 8.728755509 8.675525618 8.586477713 8.730592938 8.97472796 9.362565303 9.242568752 170139947 nmoA Organic Remediation Aromatics Nitoaromatics Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 9.197424111 9.321053962 9.279457152 8.675723748 8.35371566 8.694040932 8.762362808 8.374892602 8.703199071 8.679578634 8.847002306 8.743498871 89113929 glx Carbon cycling Carbon degradation Lignin Phanerochaete chrysosporium superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 8.42206793 8.293536838 8.665741263 8.03179842 7.65536272 7.750315336 7.256454848 7.195822413 7.790785189 7.524193864 7.623329119 7.590731319 108763795 mer Metal Resistance Mercury Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 8.329516417 8.631181505 8.521805118 7.836120683 8.650833591 8.336115421 8.612252821 8.517198651 8.442116015 8.692582202 8.382770741 83025982 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 8.356320678 8.51090824 8.135006873 9.01023567 8.945070466 9.17795062 8.555878659 9.205201311 8.535768782 8.765836859 8.872355401 8.429306772 268592352 MFS_antibiotic Antibiotic resistance transporter Providencia rettgeri DSM 1131 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rettgeri; 8.29402099 8.312678832 7.656355675 7.396490642 7.540055146 7.066785715 6.939828196 7.486407268 98978094 ArsC Metal Resistance Arsenic Sphingopyxis alaskensis RB2256 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 8.220222991 8.324012036 8.206159591 8.383900429 8.400150834 8.012236914 8.108218728 8.712962981 8.177751318 8.465814082 8.353067499 8.248660901 258584549 endochitinase Carbon cycling Carbon degradation Chitin Vibrio mimicus VM573 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 8.227454053 8.294313939 7.486577487 7.512919828 7.505867967 7.712375995 7.355268161 7.963141745 7.489741882 7.330432733 7.483337918 186476130 AceB Carbon cycling Carbon degradation others Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.254337608 8.348967786 8.309495657 8.215222432 8.145637304 8.09040749 7.816670167 8.07048807 8.4398117 7.905671246 7.848750604 7.568192748 212661984 pcc Carbon cycling Carbon fixation Bacteroides dorei DSM 17855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides dorei; 9.661382386 9.7426225 8.809278615 8.925587665 8.784195525 2826168 nagG Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.297538279 8.336320874 8.042389264 8.481265053 8.328483105 8.637886012 8.637594918 8.489726531 8.416548264 8.069510509 8.147654456 7.992668369 148498938 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.252508017 8.233201915 8.452167563 8.063141855 8.150842862 7.801935943 7.809981126 8.074521946 8.404591419 8.135908522 8.37442641 8.279664448 83594663 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 9.294540472 9.787261843 9.175259817 9.456533189 9.782213736 9.86459379 10.13116496 10.02662257 10.07666832 10.13537991 10.13743992 10.14117768 115377257 sigma_24 Stress Sigma factors Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 8.313761633 8.283293732 8.009288358 7.897280094 7.287970512 7.799559566 7.706140874 28057818 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Xylella fastidiosa Temecula1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xylella;species:Xylella fastidiosa; 8.704977167 8.838755774 8.883588677 9.342237326 9.021760575 8.739748312 9.269548018 8.996097699 8.687937092 9.110377914 8.900503185 8.831347798 54302010 dmsA Organic Remediation Others Photobacterium profundum SS9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 8.808217033 9.122100977 9.432873328 8.980789798 8.87486515 9.078722034 9.293258727 9.053054403 9.446638526 9.095355377 8.867918099 9.376142389 154687780 ureC Nitrogen Ammonification Bacillus amyloliquefaciens FZB42 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 9.401591992 9.386949519 9.23158813 8.233996011 8.159104516 8.503643386 7.39163125 8.901134416 8.932898724 8.670328019 157835004 major_capsid_protein Bacteria phage STRUCTURAL Phage MP22 order:Caudovirales;family:Siphoviridae;genus:Lambda-like viruses; 7.850301715 7.987168553 7.838037347 7.644081865 8.102026593 8.03693363 8.235459525 8.092582018 7.986923201 71558625 pcaG Organic Remediation Aromatics Other aromatics Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 9.206425407 9.011295522 8.990649508 8.817634264 8.749148747 8.367622079 8.910811667 9.202549191 8.936767905 9.178245255 9.026451282 9.1633497 127511439 nrfA Nitrogen Dissimilatory N reduction Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 9.551331061 9.329920946 9.505031057 9.493163263 9.572269808 9.46154935 9.522239469 9.876228673 9.548650489 9.665866041 9.582400499 9.664626704 55230407 catB Organic Remediation Aromatics BTEX and related aromatics Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 9.138490237 8.786755177 8.849088299 8.318409017 8.454936671 8.455563353 8.738592622 7.895039352 8.399722899 8.162504495 8.450685569 145590793 tmoABE Organic Remediation Aromatics BTEX and related aromatics Pyrobaculum arsenaticum DSM 13514 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum arsenaticum; 8.64122069 8.532212798 8.839852869 8.235166984 8.104859859 7.953290599 7.846857763 7.900402793 8.487730053 7.826125772 7.670307493 8.144834701 104781207 sigma_24 Stress Sigma factors Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 9.14935378 9.323829384 9.350848765 8.728086832 8.789555085 8.709455865 8.599922619 8.756208547 8.710468901 8.696609353 8.778107466 167362109 nitA Organic Remediation Aromatics Other aromatics Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.902696668 8.993561534 9.124484476 8.474625893 8.500665397 8.366556604 8.260648242 7.995606983 8.069673141 8.094064157 8.023252215 8.489335466 15835176 clpC Stress Protein stress Chlamydia muridarum Nigg superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Chlamydiaceae;genus:Chlamydia;species:Chlamydia muridarum; 7.086686495 7.071879637 169850224 katE Stress Oxygen stress Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 8.604098035 8.647114431 8.453364151 8.11969963 8.259567144 8.474020133 8.424431387 8.390983059 8.411973864 8.43363956 8.489231276 8.288383181 147919504 CopA Metal Resistance Copper uncultured methanogenic archaeon RC-I superkingdom:Archaea;phylum:Euryarchaeota; 8.534571641 8.024256629 7.804967438 7.729486142 8.104970738 8.103127195 7.670971716 8.075784349 7.922102877 7.890996301 8.291333686 162568593 aoxB Metal Resistance Arsenic uncultured bacterium superkingdom:Bacteria; 7.745468016 7.598629396 7.470136953 7.338153068 7.570190424 7.659335535 7.638112359 7.61307149 7.609431991 150011514 proV Stress Osmotic stress Methanococcus vannielii SB superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanococcaceae;genus:Methanococcus;species:Methanococcus vannielii; 8.106566547 8.075264541 7.237197021 7.390098757 6.803054946 7.505155647 209550133 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 9.621406646 9.495928063 9.63104251 9.14852064 9.212890763 9.233174711 9.498306549 8.758144282 9.385721207 8.925704847 8.721938233 9.033549707 88604211 pstB Stress Phosphate limitation Methanospirillum hungatei JF-1 8.839303862 8.635692869 8.822855496 8.041702599 7.911372595 7.897970579 7.716869437 7.511339936 8.100867604 7.593925338 7.549903775 7.962498588 83764473 ZntA Metal Resistance Zinc Aspergillus oryzae 8.500315335 8.272150704 7.853154818 7.757946629 7.864381808 7.728826321 7.756538604 7.777810882 7.685390523 7.763901126 7.888917664 39972991 lip Carbon cycling Carbon degradation Lignin Magnaporthe grisea 70-15 9.303863261 8.797813863 8.942710431 9.268083444 9.051030436 8.959154926 9.276713686 9.10349238 8.932755074 9.128317954 8.985443438 8.907188072 199594031 narG Nitrogen Denitrification uncultured bacterium 8.450459756 8.610941604 8.468063209 8.212029499 8.258952511 8.44260355 8.710406891 8.180904907 8.437386492 8.465327304 8.535969979 8.221699078 75197040 TerC Metal Resistance Tellurium Escherichia coli HS superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 9.130727311 9.201817324 9.229995893 8.685224841 8.765784308 8.640527327 8.485762504 8.449078045 8.571780323 8.721586524 8.576667275 8.895280968 116695735 tftH Organic Remediation Aromatics Chlorinated aromatics Ralstonia eutropha H16 8.588714681 8.687649528 8.849579495 8.168293573 8.356947625 8.676025087 8.985671502 8.159151889 9.009914429 8.217067881 8.651775992 8.475109615 223936828 sigma_24 Stress Sigma factors bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 8.583212393 8.782001726 8.779373954 8.110495899 8.411375335 8.501405712 8.645814745 8.56589145 8.443488946 8.697741322 17738328 gyrB other category gyrB Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.408666907 7.423789592 7.397198793 7.151797652 6.970421574 7.500471094 7.138900778 7.10007031 6.934275105 94414962 Catechol Organic Remediation Aromatics Other aromatics Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.899706577 8.590421716 8.798988859 8.557675943 8.578627468 8.229138396 8.239169529 8.904224133 8.2574043 8.587510806 8.669290909 8.699391574 85713652 pstB Stress Phosphate limitation Nitrobacter sp. Nb-311A 8.746631908 8.759481687 8.591719839 8.024409377 7.863457446 8.16700069 8.491097388 7.957884427 8.501375787 8.195285192 8.102565906 8.311996151 219997026 AceA Carbon cycling Carbon degradation others Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 8.301258809 8.234762441 8.443680162 8.119237553 8.184984148 7.974517019 8.229975976 8.261566126 8.187734965 8.288044088 8.039787622 8.330718547 157371971 proX Stress Osmotic stress Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 8.197710809 8.244560544 7.41548328 7.301637928 7.3722849 7.368568118 51870942 endochitinase Carbon cycling Carbon degradation Chitin Rhodothermus marinus superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Rhodothermus; 9.688476272 9.504377752 9.588780315 8.994130972 9.087111324 8.844579645 9.17307412 9.232856891 8.723753474 9.056164014 9.136509306 8.960758881 220908759 pilin virulence pilin Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 9.453031139 9.491107503 9.753475788 8.97235328 8.633195475 8.781667873 8.682720806 8.608906206 8.855042326 8.582529882 8.534091149 9.014830499 227881953 B_lactamase_C Antibiotic resistance Beta-lactamases Halogeometricum borinquense DSM 11551 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halogeometricum;species:Halogeometricum borinquense; 8.24146997 8.460879355 8.616979985 8.211458928 8.277230518 8.121146891 8.116401179 8.537157658 8.245558527 8.245922887 8.415388965 8.249928779 158313458 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.442055877 8.754713727 8.754869221 7.895718174 7.964417351 7.877631801 8.545305227 7.891329019 8.738516118 8.218906292 8.122226321 8.195543419 220712117 CadA Metal Resistance Cadmium Comamonas testosteroni KF-1 9.259438189 9.405956075 8.980590053 8.684853188 8.861252516 8.396819916 228570043 hly virulence hemolysin Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 8.875287427 8.687786261 8.580880329 8.628736973 8.330294861 8.225147093 8.287855228 8.536800127 8.380531168 8.684182616 8.371277132 8.608465517 150399896 nifH Nitrogen Nitrogen fixation Methanococcus vannielii SB superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanococcaceae;genus:Methanococcus;species:Methanococcus vannielii; 8.900428021 9.001669007 9.115246231 8.738079165 8.611651342 8.519683702 8.650812066 9.069585538 8.743059831 8.94179707 8.856359133 9.191486981 206688251 phn Organic Remediation Herbicides related compound Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 9.337326532 9.274714604 9.148578898 8.711496875 8.757209038 8.940412416 9.203131718 8.763680707 9.281103209 9.065077468 9.126155089 8.958182985 151560276 obgE Stress Radiation stress Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 8.069063019 7.897510641 8.082833336 8.067908975 8.040053044 7.667712496 7.855635569 7.787900648 7.548900775 7.568424072 7.765791671 119369934 gyrB other category gyrB uncultured bacterium superkingdom:Bacteria; 8.77615096 8.768345686 8.980870274 7.990692669 8.059574414 8.074074988 7.903572428 7.545805799 8.134136516 7.831551736 7.563146007 8.2596774 209547559 nmoA Organic Remediation Aromatics Nitoaromatics Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.20722882 8.164406251 7.551269307 7.011844474 7.770432441 7.660693367 7.990762823 7.846108852 84515323 pcc Carbon cycling Carbon fixation Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 8.237519756 8.067201656 7.730455976 7.287058516 7.253302744 7.822201033 108562911 glnA Stress Nitrogen limitation Helicobacter pylori HPAG1 8.97268197 9.03184308 8.78795605 8.352576276 8.388749461 8.287673321 8.296214143 8.086298499 8.124829339 8.1333583 8.541858457 27377730 alkK Organic Remediation Others Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.19430348 8.865341823 8.820287786 8.058884824 8.383648525 8.945021506 9.275164306 8.641113577 9.162297632 8.314708223 8.453983505 8.832301445 27375251 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 9.422164942 9.313559066 9.533889105 9.292683781 9.126384782 8.811495757 9.056868673 9.311192242 8.982985902 9.333151417 9.076836631 9.282492722 94554210 xylA Carbon cycling Carbon degradation Hemicellulose Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 9.61498717 9.454584747 9.513766196 9.167427441 9.114621567 8.991892138 8.787016261 9.135229239 8.973062014 9.108068389 9.133965313 9.225722004 71915204 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 9.379130728 9.594984703 9.463623844 8.983958426 9.301310138 9.310527409 9.981579606 8.885531094 9.842552901 9.097360977 8.788113401 9.288021778 153954762 gyrB other category gyrB Clostridium kluyveri DSM 555 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium kluyveri; 8.859063061 8.7563428 9.007937928 8.059472332 8.017222109 8.033024762 7.782297775 7.752516884 8.132935024 7.747659695 8.202840112 84701593 groEL Stress Heat shock Parvularcula bermudensis HTCC2503 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 9.738621791 9.811266888 9.845155062 9.003330018 9.017616772 9.080431976 9.226572754 8.710312659 9.113786643 8.868119372 8.830499189 9.193414979 219847229 ppx Phosphorus Phosphorus utilization Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 9.056530979 8.627164361 9.202869347 8.752016512 8.410176805 8.422262755 8.298343029 8.676863981 8.583470296 8.694905244 8.23252153 29466088 norB Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.362579284 8.182471859 8.325980629 8.424774376 8.262934439 8.043651213 8.681193629 8.428484629 8.096292412 8.357791805 8.396223064 8.254939638 145218965 sox Sulphur Sulphur oxidation Prosthecochloris vibrioformis DSM 265 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeovibrioides; 8.276728665 8.125715463 7.186609672 7.539259996 153011336 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 9.406350852 9.452464411 8.567625309 8.212870161 8.223753103 21224837 narG Nitrogen Denitrification Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.709749275 9.033150685 8.494493769 8.525858017 8.609804567 8.556734734 8.803078969 8.718676711 9.063916487 8.863537354 8.955102501 8.832820639 21220949 NirB Nitrogen Assimilatory N reduction Streptomyces coelicolor A3(2) 8.822445109 9.073183049 8.594831377 8.131510588 7.571166825 8.166698285 8.677230777 8.098856568 8.107775994 8.107297783 8.174217048 145306173 pcc Carbon cycling Carbon fixation Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 9.335154534 9.560948311 9.530307222 9.302720006 9.219293415 9.595908419 9.758193256 9.225830482 9.771140853 9.368181005 9.551211451 9.434480777 218262381 pstB Stress Phosphate limitation Parabacteroides johnsonii DSM 18315 8.121185111 8.278906473 7.675854932 7.413685354 7.576688906 7.517504029 7.265211206 7.817903596 7.644206419 7.346331472 7.852982074 77977156 SMR_antibiotics Antibiotic resistance transporter Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 8.751109745 8.657279944 8.747334948 8.242227694 8.222961909 8.222105672 8.002679276 8.59686643 8.329070185 8.325904719 8.279312025 8.333638767 120602415 sigma_70 Stress Sigma factors Desulfovibrio vulgaris subsp. vulgaris DP4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 8.834716364 8.94663952 8.980688654 8.594908681 8.587698861 8.551370401 9.208397172 8.687388634 9.218805863 8.886737822 8.881947348 8.8757007 186476301 bclA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.273258236 8.322396033 7.591337111 7.732221193 7.745071485 7.903609123 7.79461028 8.03456434 7.554083199 7.552581468 7.466828292 91697349 pstC Stress Phosphate limitation Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 8.580988883 8.244106004 8.4391685 8.222652439 8.086022099 8.130898345 7.851440836 7.943369776 8.124940043 7.958763614 8.30935503 7.906455067 72162538 sigma_70 Stress Sigma factors Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 9.263039971 9.105431784 9.122135606 9.527004439 9.149130857 8.695399348 9.411023224 9.200694373 9.17675835 9.372128119 9.185345681 8.913420658 88805835 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 8.872169839 8.74469474 8.747649466 8.100030406 7.977759134 8.264495389 7.618613093 7.905294396 8.093198493 8.042003711 8.01450935 8.15449708 84664257 exaA Organic Remediation Chlorinated solvents Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.787856185 8.98647445 8.693468769 8.95568071 9.221252008 8.996401752 8.848819752 9.335750102 8.909627955 9.115661002 9.047553894 9.056263154 88813777 ZntA Metal Resistance Zinc marine actinobacterium PHSC20C1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 9.932167632 9.800143075 9.550634624 9.736084017 9.919766908 10.25915196 9.904958887 10.21478926 10.12048174 9.924063441 10.04706202 9.851773984 163816691 ChrA Metal Resistance Chromium Coprococcus eutactus ATCC 27759 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Coprococcus;species:Coprococcus eutactus; 8.277130274 7.904604692 7.830715895 7.678781017 7.8453147 7.35078161 7.606993461 29607890 Catechol Organic Remediation Aromatics Other aromatics Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 9.854535164 9.388868781 8.781273221 8.532518526 8.557033215 8.745113007 8.657692101 8.554689116 8.664287001 8.890027155 73540593 trzN Organic Remediation Herbicides related compound Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.262702735 8.509452121 8.592967135 8.217787273 8.016409526 7.829605258 7.85703108 8.26702279 7.951513577 8.094678796 7.971336455 8.316598081 90954591 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.162864574 7.040440871 7.451462821 7.279315952 6.650302945 7.64879368 7.157941519 6.927446709 7.340429987 109455707 HBH Organic Remediation Aromatics BTEX and related aromatics Roseobacter denitrificans OCh 114 8.326023994 8.014620072 7.98738555 8.060669645 7.813132575 7.861164194 8.161832862 8.177100886 8.074575825 8.19604526 8.028056833 116224395 sigma_24 Stress Sigma factors Candidatus Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 8.411593095 7.982618358 8.081886113 7.947298921 8.135956433 7.548632316 8.157268843 7.876278876 8.199599321 8.23868325 7.747505532 170721213 katE Stress Oxygen stress Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.847417913 8.532518936 8.876109276 8.876798216 8.818475535 8.739080536 8.608566297 9.148633918 8.802649796 8.819528825 8.58417912 8.703588562 206678920 alkK Organic Remediation Others Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 10.41781153 10.59743051 10.51851783 9.457903564 9.738415726 9.891315046 10.34534427 9.844037683 10.74659182 9.538704843 9.75969505 9.8516394 212639340 Al Metal Resistance Aluminum Anoxybacillus flavithermus WK1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Anoxybacillus;species:Anoxybacillus flavithermus; 8.617542933 8.382928615 8.686054858 8.233506813 8.235368848 8.156580084 8.140908327 8.066298535 8.28595506 8.186981995 8.190288416 8.141920756 154302286 tftH Organic Remediation Aromatics Chlorinated aromatics Botryotinia fuckeliana B05.10 8.136517776 8.464197702 8.388129722 8.108709948 8.280785508 8.168654182 7.851066799 8.184811138 7.860732393 8.184079556 3219733 napA Nitrogen Dissimilatory N reduction Rhodobacter sphaeroides f. sp. denitrificans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 8.261836767 7.998134345 7.456251391 7.863228903 8.03767525 7.853028227 7.766691102 7.985823426 7.873745111 7.610873955 220913260 sigma_24 Stress Sigma factors Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 8.938218513 9.218579322 8.748958897 9.02097722 9.084168862 8.895556466 9.250130578 9.158210477 8.963941517 9.296722229 9.120115275 8.791933253 116743270 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.778032302 8.831217792 8.923301019 8.035624786 8.105284763 8.229522713 8.430676986 8.663962961 8.24793262 8.419257617 8.458163431 8.341547032 256363661 fnr Stress Oxygen stress Catenulispora acidiphila DSM 44928 8.191595504 8.05955369 8.430447117 8.099394096 7.918572781 7.82497983 8.266373955 8.24043415 7.744647933 8.137761278 241366382 sigma_24 Stress Sigma factors Acidovorax delafieldii 2AN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax delafieldii; 11.19155021 11.12373961 11.40649617 11.05688906 10.87638066 10.6056632 10.75911407 10.84115463 10.87164593 11.06262347 10.9211094 11.1726873 256793131 pstB Stress Phosphate limitation Slackia heliotrinireducens DSM 20476 8.46651462 8.394025335 8.211246979 8.779912626 8.325174668 8.398021384 7.538797739 8.864231985 8.272698787 188029622 CopA Metal Resistance Copper Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 9.884230008 9.82894951 9.915416272 9.084102576 9.077311859 8.952749311 9.209300688 8.799621833 9.282360465 9.039532138 9.327221856 9.115059453 217504165 pstA Stress Phosphate limitation Methylocella silvestris BL2 8.775291299 8.761500027 8.797363186 8.444355305 8.260998799 8.011801636 8.08996539 8.018663474 8.27415302 8.283740794 8.170930463 8.271611383 218675776 AprA Sulphur adenylylsulfate reductase Robbea sp. 2 SB-2008 associated bacterium 9.176364681 9.101725473 9.240892647 8.339968624 8.454034503 8.777476364 8.91840897 8.057627596 8.790228337 8.687210707 8.70775792 8.523454882 51894083 fnr Stress Oxygen stress Symbiobacterium thermophilum IAM 14863 8.501005663 8.480843366 8.877652229 8.413050994 8.572660233 8.540429272 8.643849055 8.623454242 8.605547385 8.119413623 8.408275437 8.338875451 23978239 gyrB other category gyrB Phormidium sp. IAM M-99 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Phormidium; 8.557097904 7.863514926 7.98275185 7.34552061 7.633403986 7.402648833 7.675685649 7.9182563 197782533 TerD Metal Resistance Tellurium Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 9.201905027 9.1481062 9.201467919 9.096145481 9.100142925 8.694164858 9.052891461 8.94875736 8.80230614 8.961880683 8.976854876 9.00224757 34104610 AceB Carbon cycling Carbon degradation others Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 8.643526596 8.731950517 8.838836715 8.279188053 8.123121385 8.492171821 8.862145391 8.528814175 8.745680637 8.535547694 8.316628943 8.458259276 159180084 pstB Stress Phosphate limitation alpha proteobacterium BAL199 8.687104446 8.614714871 8.76080302 7.875378185 8.069636954 8.363003496 8.518331364 7.892731033 8.047530103 8.067433785 8.253612841 219945388 Catechol Organic Remediation Aromatics Other aromatics Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 8.472146794 8.439975984 8.797786985 7.898871962 7.778149949 7.577506223 7.351096446 7.435746397 8.031692632 7.820789758 8.08831644 8.133771287 227069653 NiR Nitrogen Assimilatory N reduction uncultured archaeon 8.371387472 8.30779986 8.124665497 8.991243607 8.654966824 8.184315893 8.630109904 8.56380726 8.387231282 8.453984485 8.43725802 8.002077005 197774516 atzA Organic Remediation Herbicides related compound Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 8.977496965 8.856790657 8.742104693 8.215296765 8.012026286 8.319373062 8.588205122 8.428719429 60475978 rubisco Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.602308594 8.832490393 8.677813085 8.455241861 8.577918638 8.508320405 8.829497281 8.5823907 8.839575395 8.60800209 8.505806481 8.522913834 150036100 sox Sulphur Sulphur oxidation Thiolamprovum pedioforme superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiolamprovum; 8.633167627 9.207762268 8.573460767 7.985375416 8.46189516 8.819307526 9.290013412 8.594014894 9.063799917 8.199723713 8.339803317 8.565440428 154161986 CadA Metal Resistance Cadmium Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 9.412071746 8.937108453 8.741689594 9.305590072 9.374752015 9.422712454 8.984636506 9.475065831 9.157988454 9.485567492 9.737090004 9.158629293 260452979 pstA Stress Phosphate limitation Streptomyces flavogriseus ATCC 33331 9.226533511 9.311048238 9.229886689 8.542994008 8.801728364 9.04940814 9.50955888 9.14132059 9.305788777 9.008587593 9.222818775 9.19808365 13423803 amyA Carbon cycling Carbon degradation Starch Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 8.643164696 8.855437824 8.988463411 8.413697783 8.617736813 8.386140282 8.57512221 8.949893831 9.020264427 8.822239696 8.69164437 8.707351244 219563074 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 9.403809974 9.507075584 9.194049719 8.635729294 8.907887963 9.401020078 9.387954762 9.612537613 8.58932601 8.52791505 8.884315662 37925731 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.424764828 8.315715657 7.986396696 8.165659845 7.892741578 7.639869566 8.466097151 7.872375957 7.982884077 7.880880663 8.519522699 156868878 ara Carbon cycling Carbon degradation Hemicellulose Clostridium leptum DSM 753 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 8.71961911 8.023072393 8.136058078 8.554040299 8.153483184 8.35739431 7.973948237 8.284168124 7.904618764 8.319978287 8.646932677 8.30068249 144944019 nifH Nitrogen Nitrogen fixation Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 8.84415514 8.475193998 8.493607294 8.931638555 8.797549955 8.411971278 8.719932949 8.857102724 8.563209676 8.926792302 8.920270216 8.200353925 262334575 ahpC Stress Oxygen stress Rhodothermus marinus DSM 4252 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 8.864115457 8.953201288 8.923828523 8.500749847 8.523167896 8.475948536 8.764884019 8.770937839 8.759916385 8.531836049 8.68441258 167569184 MFS_antibiotic Antibiotic resistance transporter Burkholderia oklahomensis C6786 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia oklahomensis; 8.593108005 8.51314268 8.407602245 7.690066377 7.554421863 7.858685582 8.213903072 7.903430057 8.025251034 7.614727669 7.592223852 7.844774985 113530216 MFS_antibiotic Antibiotic resistance transporter Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.96002499 8.234143913 8.292631092 9.058321569 8.908237662 8.543655824 8.900293763 8.691300892 8.293567098 8.466122574 8.567859742 8.272287834 198263923 ChrA Metal Resistance Chromium Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 8.256112603 8.239376017 8.259466102 8.14900798 7.952821384 7.771352154 7.896975186 8.312378836 8.350424127 8.217350919 7.952269341 8.242035869 59800364 phenol_oxidase Carbon cycling Carbon degradation Lignin Lentinus tigrinus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Lentinaceae;genus:Lentinus; 8.714258841 8.473649625 8.801480318 8.866384907 8.578345421 8.867163899 8.90642528 8.728077013 8.749299428 8.314589945 8.339120065 18978311 nplT Carbon cycling Carbon degradation Starch Pyrococcus furiosus DSM 3638 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Pyrococcus;species:Pyrococcus furiosus; 7.072605114 6.727807018 6.820992757 7.390347369 114548321 pcc Carbon cycling Carbon fixation alpha proteobacterium HTCC2255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.167223853 8.214400945 8.375572071 8.106035062 7.924875943 8.15163237 7.702177853 8.275968895 8.36879513 8.236525923 7.884401729 223517450 bphF1 Organic Remediation Aromatics Polycyclic aromatics Ricinus communis 9.231083374 9.065957351 9.069868093 8.945053306 8.914191375 8.953820528 9.097801393 9.025768286 9.09312656 8.973854452 9.148552714 9.07925232 256765754 B_lactamase_C Antibiotic resistance Beta-lactamases Streptomyces sp. C 9.174557841 8.663900809 8.911280617 8.366816326 8.315756645 8.15159888 8.28736215 8.182622263 8.231497471 8.154998362 8.373426753 73660999 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. CBDB1 8.747347194 8.400287617 8.207847018 8.454430749 8.264917358 7.854559413 8.448369837 8.488765769 8.495728014 7.976873006 7.882174874 8.222957442 119961345 cydB Stress Oxygen limitation Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 9.141839925 9.0364565 8.669205247 9.392395616 9.163229474 8.748687002 145593521 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 8.14669051 7.998645134 7.292940427 7.565915955 7.886842657 7.994084657 7.307347218 7.337855518 60651005 nifH Nitrogen Nitrogen fixation Azomonas macrocytogenes superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azomonas; 8.960192329 8.798992043 8.583454547 8.610342761 8.413226885 8.51692808 8.139234741 8.830664054 8.239138258 8.535025846 8.878056765 8.640511684 56130717 pbrD Metal Resistance Lead Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.428386833 8.633944879 8.604539276 8.524505719 8.33485725 8.32858312 8.288924622 8.130467499 8.591084705 8.162877326 8.447860761 8.384252542 260464131 fnr Stress Oxygen stress Mesorhizobium opportunistum WSM2075 8.057539651 8.335437966 7.310673883 7.833957905 8.187437634 8.30334802 7.700400928 8.212417713 7.777643756 8.078254123 8.163726181 215270873 sigma_70 Stress Sigma factors Vibrio rotiferianus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.533057374 8.416394336 8.378566872 8.779100866 8.646248458 8.418318012 8.700423858 8.404903239 8.262030834 7.758557605 7.984497282 7.979957387 77389056 mer Metal Resistance Mercury Rhodobacter sphaeroides 2.4.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 9.265280762 8.9167368 8.808089765 9.092978936 9.03239906 8.633477595 8.54109056 8.829741334 8.567573084 8.672451124 9.085465011 8.621031622 281376902 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 8.449104163 8.372738348 8.615724905 8.669594856 8.888063952 8.665717059 8.728708609 9.317622414 8.749363395 9.074252166 8.992238875 9.192421555 47076738 narH Stress Oxygen limitation Geobacillus stearothermophilus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.316544652 8.438325034 8.352259485 8.137250748 8.232212197 8.494853257 8.889635594 8.613604516 8.895215162 8.966387228 8.987199421 33603750 phtB Organic Remediation Aromatics Aromatic carboxylic acid Bordetella bronchiseptica RB50 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella bronchiseptica; 8.434074256 8.231593977 8.760208003 8.324146821 8.069323842 8.125501164 8.374602153 8.015971485 8.503757837 7.907935053 8.01324674 7.891654934 160917579 narG Nitrogen Denitrification uncultured bacterium 8.520569048 8.570327626 8.467018553 8.610746821 8.65183951 8.822118512 8.898040361 8.597704217 8.652575509 8.39093046 8.549101467 8.407125463 197776825 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 8.546841425 8.642004591 8.119619045 8.185484093 8.111117201 8.116019548 8.305276566 8.727607234 8.259203913 148547458 PobA Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 9.752438382 9.617807874 9.4460787 8.671611354 8.88748692 9.276850753 207091222 ppx Phosphorus Phosphorus utilization Nitrosococcus oceani AFC27 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 8.631506927 8.302131597 8.561027804 7.564627913 7.563297714 7.550608225 7.847106665 7.38004858 7.755630099 7.554523857 7.830487788 77382551 cbdA Organic Remediation Aromatics Chlorinated aromatics Pseudomonas fluorescens PfO-1 9.429693911 9.323606183 9.234185209 8.191404588 8.308990263 8.760384619 9.075965286 8.419221573 8.962052085 8.558472451 8.35943749 8.446032599 115525052 SMR_antibiotics Antibiotic resistance transporter Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.812506563 9.067564114 9.501352666 9.513668426 9.258105465 9.35523307 9.235002614 8.986673996 9.158226074 9.276228038 8.802161492 220708649 catechol_B Organic Remediation Aromatics Other aromatics Geobacillus sp. Y412MC61 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.697212399 8.258889562 8.105544724 8.300822283 7.767982146 7.695570433 7.965774446 8.0938016 8.157882806 7.811947519 7.733886261 111024959 nahA Organic Remediation Aromatics Polycyclic aromatics Rhodococcus jostii RHA1 8.563488143 8.464689148 8.495168666 8.232153736 8.017816911 8.115658208 8.070000806 8.204037132 8.055448413 8.294873806 8.13577261 8.363627752 261857007 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.44030949 8.413273156 7.856722502 7.937829139 8.222105449 8.197435805 8.003858695 8.32362485 7.926379781 7.962272857 7.847849372 58428200 MFS_antibiotic Antibiotic resistance transporter Xanthomonas oryzae pv. oryzae KACC10331 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 8.449644903 8.636058898 8.594449638 8.796120629 8.44503691 8.374682613 8.757297767 8.992196669 84392406 ZntA Metal Resistance Zinc Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 8.440317981 8.494496942 8.486946408 8.267184889 8.408048198 8.18740161 8.486196683 8.215714324 8.47461072 8.261886746 8.313136426 8.386365163 219677867 oxyR Stress Oxygen stress gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.80839405 8.558682656 8.631889797 7.864067622 7.855606552 7.968552943 7.764050353 7.553106397 8.274703002 7.899189341 7.962365877 7.818970833 227165208 oxyR Stress Oxygen stress Proteus mirabilis ATCC 29906 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 8.239616662 8.313663903 8.568049922 8.004614775 7.891018497 7.981760683 7.650642246 7.573521064 7.745971684 7.627481986 8.008131211 256832948 amyA Carbon cycling Carbon degradation Starch Jonesia denitrificans DSM 20603 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 9.079574238 9.014472915 9.074631996 8.496063009 8.476445201 8.35417057 8.191252222 8.16177992 8.427850228 8.172264062 8.33669219 8.585937856 160898443 sigma_24 Stress Sigma factors Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.60859739 8.439910315 8.569186129 8.609609512 8.704226506 8.366200067 8.261441597 8.695214114 8.581482892 8.594650469 8.377315012 8.345895375 85699186 hrcA Stress Heat shock Nitrobacter sp. Nb-311A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter; 9.078020793 9.001398431 8.720993301 8.586408043 8.601015833 8.353689879 8.184923173 8.631590617 8.693902172 8.475660263 8.367314257 8.568839624 260840381 iuc virulence aerobactin Vibrio sp. RC341 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.230916593 6.91554852 7.016798321 13474292 glnA Stress Nitrogen limitation Mesorhizobium loti MAFF303099 8.797125091 8.726386122 8.724117121 9.177309401 9.016283961 9.01891537 8.459150403 9.264176935 8.795318668 8.924882545 8.963974482 8.54607148 254511619 hrcA Stress Heat shock Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 9.250810766 9.129233997 8.968531201 8.349631959 8.20275534 8.352022157 8.314491984 8.313661297 8.396092797 8.233423504 8.219145649 8.603981984 163798084 adpB Organic Remediation Pesticides related compound alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 7.762815531 7.880175175 7.913736391 7.659768674 7.674410914 8.154605239 7.753128938 8.045492473 116197431 nagG Organic Remediation Aromatics Aromatic carboxylic acid Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 8.624219503 8.717765474 8.896249514 8.346338626 8.381761289 8.266067038 8.247314571 8.129642867 8.379358623 8.382210036 8.438606979 8.607608338 261835326 pilin virulence pilin Halothiobacillus neapolitanus c2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Halothiobacillaceae;genus:Halothiobacillus;species:Halothiobacillus neapolitanus; 8.650405716 8.652354725 9.011401296 8.289188191 8.331911769 8.194061459 8.281380609 8.249613231 8.423150069 8.328444528 8.427947871 163742910 phn Organic Remediation Herbicides related compound Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 8.233428023 8.493750194 8.48849269 8.082675234 7.920675995 7.909861762 7.940227096 7.636839674 8.047065813 7.78567369 7.838735743 7.855870502 91690399 nagG Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 9.045056305 8.932471449 8.725785884 9.419433166 9.296750951 9.243405121 8.978128281 9.272507531 8.927830355 9.253549955 9.278210515 8.560712417 162147323 alkJ Organic Remediation Other Hydrocarbons Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 8.457696473 8.502084821 8.250642059 8.193488276 8.046935225 7.886999645 8.00292399 8.094751235 8.481552544 8.114620881 7.911663932 7.993669543 6460756 ureC Nitrogen Ammonification Deinococcus radiodurans R1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 8.55063599 8.592930373 8.333711101 8.63730912 8.939919441 8.693291756 8.723279202 8.724481358 8.243737898 8.676632032 8.216732719 254430312 B_lactamase_C Antibiotic resistance Beta-lactamases Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 8.84658901 9.129365889 9.070788556 9.243433811 9.331143961 9.212860666 9.697716291 9.153487381 9.657567179 9.620254704 9.580280681 225020077 bglH Stress Glucose limitation Corynebacterium matruchotii ATCC 33806 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium matruchotii; 8.887879514 8.919008857 8.960294791 8.530088148 8.448312361 8.376786364 8.380253857 8.196035719 8.453451668 8.304151905 8.114430448 8.427759563 77996972 CopA Metal Resistance Copper Carboxydothermus hydrogenoformans Z-2901 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Carboxydothermus;species:Carboxydothermus hydrogenoformans; 8.912565826 9.226010055 9.168332386 8.674341474 8.553162777 8.814680423 8.877978782 8.503585103 8.891158345 8.640675171 8.935447584 8.879088273 257059181 gyrB other category gyrB Cyanothece sp. PCC 8802 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 9.578966302 9.651104497 9.669388269 9.041259552 8.990586395 8.900223326 8.894725002 8.680903865 9.091124338 8.686790469 8.710195555 8.967930918 119776312 cytochrome Energy process Energy process Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 8.143253684 7.975257174 7.832276873 7.364780118 7.769533034 7.748304497 7.45174416 7.938185813 7.390894895 7.568590718 124876455 sigma_70 Stress Sigma factors Burkholderia cenocepacia PC184 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 8.240481286 8.281841378 8.382378428 8.266589247 8.201425203 8.27542823 8.341704131 8.451748429 8.394769621 8.702664613 8.641325062 8.602961683 14521248 phoA Stress Phosphate limitation Pyrococcus abyssi GE5 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Pyrococcus;species:Pyrococcus abyssi; 7.408108432 7.616526952 7.030597921 7.59397126 116695545 hdnO Organic Remediation Aromatics Heterocyclic aromatics Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.500660559 8.695119769 8.439168483 7.647040815 8.083006792 8.174480707 8.399954551 7.785253801 8.868278518 7.833301904 7.768585906 7.827811252 118591660 sox Sulphur Sulphur oxidation Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 8.390899811 8.287408693 7.907158605 7.940101022 7.523932524 8.068091502 7.825041387 8.087234145 7.660176935 8.055205082 197934693 pchCF Organic Remediation Aromatics BTEX and related aromatics Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 8.196775774 8.099973846 8.426838427 8.393705911 8.084368133 8.517981315 8.389675102 8.648716905 8.399937275 8.226883402 7.868657279 260898906 pcc Carbon cycling Carbon fixation Vibrio parahaemolyticus Peru-466 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 8.67433931 8.846738024 8.855960808 8.531020913 8.627401725 8.430918886 8.846100167 8.493390188 8.813791075 8.411448136 8.641615917 8.393879562 108760660 endochitinase Carbon cycling Carbon degradation Chitin Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 9.005759831 8.798599488 9.009809737 8.9372956 8.797099914 8.584407439 8.83839335 8.761605302 8.397162774 8.808567958 8.704355149 8.817319708 119377453 sox Sulphur Sulphur oxidation Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.403027271 8.513278355 8.54472143 7.493660917 8.198616663 8.339825283 7.845895594 8.397474364 8.051785887 7.933505987 7.981853312 83590824 CopA Metal Resistance Copper Moorella thermoacetica ATCC 39073 8.821408879 8.481074536 8.795990831 8.697478549 8.626313608 8.358345765 8.368949752 8.742887267 8.536297931 8.734606667 8.516071206 8.964796479 218245753 fnr Stress Oxygen stress Cyanothece sp. PCC 8801 8.312057043 8.135295844 7.523500788 7.326491006 7.396072969 7.160322142 6.686473354 7.729557861 7.484954759 6.970838795 7.509127812 89896894 arsM Metal Resistance Arsenic Desulfitobacterium hafniense Y51 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 8.774143945 8.658230989 8.85528451 8.102049165 8.172974965 8.118919013 7.949641099 7.830367143 7.931850088 7.680922062 8.321196061 255920367 ara Carbon cycling Carbon degradation Hemicellulose Actinosynnema mirum DSM 43827 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinosynnemataceae;genus:Actinosynnema;species:Actinosynnema mirum; 8.358034838 8.843023184 8.671788318 8.044148244 8.144638879 8.470552194 8.492349837 8.145558569 8.311566041 7.97631248 8.18272447 8.023872522 187719831 pcaG Organic Remediation Aromatics Other aromatics Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8.71019852 8.687330419 8.823687669 8.121837776 8.370376873 8.846046925 8.946293035 8.527401618 8.697055021 9.005675079 8.780836614 8.851063581 148511181 nagG Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.198612419 8.429468775 7.890501628 7.859629416 7.779069332 7.949813127 7.858895354 7.977760218 8.057806456 8.004058345 269096754 SMR_antibiotics Antibiotic resistance transporter Sanguibacter keddieii DSM 10542 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Sanguibacteraceae;genus:Sanguibacter;species:Sanguibacter keddieii; 8.822351998 8.46951257 7.734953146 7.306001845 7.875647378 8.458757947 7.830296579 7.763162102 7.747481936 7.646343524 78356864 cytochrome Energy process Energy process Desulfovibrio desulfuricans subsp. desulfuricans str. G20 9.143765897 9.033973139 9.188791156 8.679121062 8.5536663 8.527672182 8.484578289 8.763095381 8.165240836 8.615120598 8.537182403 8.717970611 110623046 arsB Metal Resistance Arsenic Paracoccus sp. A10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 8.63054868 8.746539012 9.01329175 8.922517694 8.979401835 8.43886969 8.614133991 8.998959377 8.88094554 9.088632319 9.166707915 9.033175502 54018180 TerD Metal Resistance Tellurium Nocardia farcinica IFM 10152 9.201158264 8.818744242 8.93651385 8.872242502 8.769333089 8.572306236 8.859214275 8.808856141 8.788892054 8.730248841 8.700004249 8.632756225 148255328 exaA Organic Remediation Chlorinated solvents Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.250675072 8.190672174 8.119693852 7.583082373 7.627492445 7.734416059 7.758561872 7.204884552 7.613104732 7.822219516 7.521998815 119353956 silC Metal Resistance Silver Chlorobium phaeobacteroides DSM 266 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 7.635345408 7.513721015 7.2329303 7.322084511 7.103418608 7.317230519 7.371214516 7.460924089 197730187 PobA Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces clavuligerus ATCC 27064 8.508544162 8.724033743 8.536469456 8.603055654 8.624114285 8.545507599 8.557669105 8.733265207 8.566113008 8.816737602 8.797792411 8.473928841 87198534 chnB Organic Remediation Other Hydrocarbons Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 8.615212048 8.950944369 8.867615212 8.467433431 8.052562243 8.763908841 8.929872949 8.48678824 8.899487947 8.729642084 8.844042498 8.817568447 145609479 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 8.5305675 8.721941942 8.607648942 8.144241244 8.025919546 8.041056437 8.067659258 7.931216323 7.87823796 7.876312982 7.967225767 7.962641284 148569041 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 8.249138167 8.290430846 8.31663858 8.611804023 8.369127598 8.313084666 8.026173188 8.395587593 8.383974279 8.193000836 8.246995201 8.103363478 83716898 alkK Organic Remediation Others Burkholderia thailandensis E264 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 8.839515546 8.585259207 8.590555302 9.213226403 9.036663642 9.040822473 8.332289626 9.405194336 8.517890708 8.915352284 8.988578909 9.269996587 221533576 nhh Organic Remediation Aromatics Nitoaromatics Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 9.155539138 8.832601295 9.267896749 8.786756724 8.790634538 8.770425856 8.643241007 9.061122336 8.548231595 8.953044202 8.846808672 8.964549497 99083169 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.909874153 7.847619025 8.24308047 6.849418025 6.736624239 6.839666136 7.096425871 7.437554668 237846161 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.765866101 8.352586718 8.777703343 8.824636919 8.426846565 8.241631332 8.494605679 8.581949058 8.377630059 8.212324661 86158824 nosZ Nitrogen Denitrification Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 8.699234936 8.367172347 8.421914167 8.508298056 8.520159915 8.636129914 8.432723038 8.506321201 8.595347975 8.267154255 8.770726508 8.342522905 227102854 bphF1 Organic Remediation Aromatics Polycyclic aromatics Gordonia bronchialis DSM 43247 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 9.155744827 8.905142543 8.904689604 8.298115436 8.924548087 9.000347876 9.366205616 8.102969553 9.154393659 8.22014499 8.537498635 8.260029386 238027580 MFS_antibiotic Antibiotic resistance transporter Burkholderia glumae BGR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia glumae; 8.964684168 9.108514907 9.166304257 9.225238382 9.069490949 8.942646191 9.14758194 9.362717975 9.123367383 9.266033578 9.004210291 9.161085648 13815352 ferredoxin_oxidoreductase Bioleaching Electron transport Sulfolobus solfataricus P2 8.395903972 7.986175298 8.313619702 7.362796351 7.473102884 7.317362166 6.628380614 6.612308864 7.3916791 7.265155823 6.944236576 7.378831972 154156862 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 9.120652059 8.898768847 8.327766829 8.126288753 7.68265491 8.24448796 8.641310939 8.039362339 8.243312876 7.815694287 8.112110817 8.058840843 86748228 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.034079618 9.039595141 8.689442356 8.615767449 8.790783411 8.777858623 8.595646921 8.541293203 8.807822073 8.823387718 8.648553626 8.794466584 30269577 nasA Nitrogen Assimilatory N reduction uncultured bacterium superkingdom:Bacteria; 8.580559151 7.96334895 8.239977714 7.735477245 7.760854895 7.826508022 7.738952123 7.638461177 8.009142063 7.778337412 7.697287532 7.884231094 161329801 pimF Organic Remediation Aromatics Aromatic carboxylic acid Shewanella benthica KT99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella benthica; 9.147938723 8.899455996 9.150870921 8.557897545 8.541199669 8.445927253 8.293229245 8.463483591 8.494142041 8.578315609 8.417505572 8.453760747 225196700 pstA Stress Phosphate limitation Desulfonatronospira thiodismutans ASO3-1 8.914982185 8.755251729 8.715535126 8.558262039 8.533885351 8.611496419 8.477975078 8.708515224 8.639516531 8.593454486 8.520086536 8.837216298 21220080 ara Carbon cycling Carbon degradation Hemicellulose Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.775474273 8.782670328 8.890348189 8.473626901 8.356685367 8.118057383 8.542447531 8.61948821 8.750388493 8.624854066 8.602856459 8.642748499 95114206 alkB Organic Remediation Other Hydrocarbons Rhodococcus sp. SoF superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.41026719 8.262731301 8.307656134 8.049715193 8.527862005 8.714953692 8.122608293 8.553283852 8.532874823 8.164719695 8.328373304 8.174355315 157406196 CopA Metal Resistance Copper Methylobacterium populi BJ001 8.947751758 8.888511755 9.066165881 8.881910216 8.536772076 8.783985774 8.861632723 8.688629174 8.737003514 8.6678945 8.770305619 8.812547368 187477120 ophC Organic Remediation Aromatics Aromatic carboxylic acid Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 8.671034419 8.709616231 8.928169678 7.81962614 7.61710722 7.787354085 7.203619015 8.09817395 7.787543855 7.745719447 8.107030354 51534775 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.55338111 8.502105403 8.937153661 8.81987917 8.95552186 8.803263061 8.771753259 9.347697634 8.749822644 8.958796516 9.050157417 9.129035591 258553736 AceB Carbon cycling Carbon degradation others Nakamurella multipartita DSM 44233 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 9.359304587 9.387130713 9.285956605 8.944309783 9.038069534 9.211800218 9.296199377 8.98761846 9.393302351 8.947985287 8.995406944 8.824523912 84509361 xylA Carbon cycling Carbon degradation Hemicellulose Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 8.12767517 8.134731441 8.24697856 8.219961319 8.037749833 7.822580641 8.420381261 8.047294797 8.138427839 8.345769548 7.714179459 84384755 pimF Organic Remediation Aromatics Aromatic carboxylic acid Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 8.872524106 8.787265892 9.045697279 8.283046857 8.373751861 8.117509403 8.251914717 8.412313864 8.114963324 8.619679845 8.245404913 8.211558122 145309497 gyrB other category gyrB Alicyclobacillus macrosporangiidus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus; 8.497500882 8.277188154 8.042339167 8.060027004 7.829542632 8.084448544 8.062874498 7.989562422 8.268487426 8.14743224 7.968359497 145282559 tmoABE Organic Remediation Aromatics BTEX and related aromatics Pyrobaculum arsenaticum DSM 13514 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum arsenaticum; 8.703510307 8.513000212 8.422041197 8.316304011 8.125427107 8.074958268 7.903472349 7.961193104 8.100435819 7.901801539 7.979227364 148498439 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.986633426 8.891039423 8.900666811 8.667647613 8.634027867 8.811998871 9.055716172 8.702104755 8.893651119 8.831820446 8.566261369 8.887509142 229215581 AceB Carbon cycling Carbon degradation others Desulfomicrobium baculatum DSM 4028 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfomicrobiaceae;genus:Desulfomicrobium;species:Desulfomicrobium baculatum; 8.284012537 7.849438766 7.919231641 7.748564066 7.67390797 7.564781892 7.61970671 8.132128033 7.816640578 7.533560319 7.558655772 254486053 pcc Carbon cycling Carbon fixation Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 9.477460441 9.211055813 9.253332777 8.656527966 8.832020419 8.957339266 8.895566214 9.026830255 8.925145609 8.979541913 9.041282122 9.085962047 119386345 pcc Carbon cycling Carbon fixation Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.400750161 8.65522802 8.878169824 8.67013591 8.783182856 8.446897565 8.772267007 9.018525616 9.017340515 8.974068754 8.721127361 8.925827348 90108376 amyA Carbon cycling Carbon degradation Starch Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.697542061 8.560580104 8.186064213 9.021583194 9.173817509 9.07109354 8.489516616 9.251334205 8.39359513 8.755711887 8.944690806 8.749959962 91802739 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 9.334718873 9.37031916 9.469313229 8.76121829 8.62435239 8.687873359 8.705206365 8.271338311 8.385989143 8.454862359 8.226264437 8.748233291 134135967 iro virulence Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 8.793184621 8.926799582 9.006022128 8.352298131 8.518891556 8.881027592 8.942408327 8.483142008 9.156463035 8.351590845 8.307811572 8.646701481 161729067 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 8.726232831 8.765751104 8.910106241 8.230803826 8.216180354 8.109752975 7.925756739 7.82592858 8.332313818 8.089579348 8.167624778 8.375618466 160917567 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.746270914 8.443276994 8.64769615 8.930169952 8.38543502 8.100070977 8.070818217 8.271617855 8.17968915 8.277093405 8.507356069 8.18092757 114805456 pbrA Metal Resistance Lead Thermoanaerobacter ethanolicus X514 9.173190312 9.12776375 9.27012553 8.560947521 8.175745191 8.230366154 7.93751871 7.944573461 8.171988153 7.962028637 8.429584888 110819383 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.594044295 8.679910628 8.399327895 8.350497604 8.166662881 8.42179523 8.646341629 8.543542225 8.544695439 8.326805107 8.274704309 124515799 nitrogen_fixation_genes Bioleaching Nitrogen Leptospirillum sp. Group II UBA 8.230329784 8.860397286 8.481609484 7.971184194 7.967190137 8.054705633 7.980370317 7.84650165 8.629969604 8.248431573 8.415295337 91788852 PobA Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 8.53403608 8.307966418 7.929657748 7.933614774 8.286407099 8.296187532 7.973336257 8.829319187 8.525644861 8.261288182 257052670 pstB Stress Phosphate limitation Halorhabdus utahensis DSM 12940 9.045428834 8.715246734 9.175674113 8.151894927 8.126282193 8.077638956 8.376857521 8.112009308 8.46494549 8.063106939 8.222095802 8.385535649 18413622 narH Stress Oxygen limitation Halomonas halodenitrificans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 8.570406962 8.393241289 7.83555628 8.040969618 8.179302709 8.585182449 7.502053794 8.404384574 8.044935031 7.903434912 199584253 CopA Metal Resistance Copper uncultured bacterium superkingdom:Bacteria; 8.514760702 8.417603792 7.758871144 8.148362889 8.003958864 8.199996289 8.324463109 8.242641006 8.060522426 8.115393765 45386111 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 8.51462612 8.569526429 8.776023552 8.175661689 8.357665744 8.253361886 8.047086619 8.457564884 8.22331815 8.284624742 8.205957037 227341551 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 9.081924604 8.779499563 9.041472226 8.488171537 8.533708399 8.29130166 8.275408641 8.293882333 8.88617867 115433787 ppx Phosphorus Phosphorus utilization Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 8.662010438 8.416857555 8.40086929 8.976889424 8.75149587 8.155247129 8.880780158 8.605218889 8.613753888 8.830523563 8.219316519 8.312788017 148261238 NDEDFP_EPS Bioleaching EPS Acidiphilium cryptum JF-5 8.073896272 8.143674679 8.028943872 7.839470096 7.65347343 7.456411132 7.686521872 7.655110341 8.225234782 7.470283323 7.407182378 7.759525509 161075759 NirB Nitrogen Assimilatory N reduction Verrucomicrobiae bacterium V4 9.129876236 8.661654865 9.164690863 8.376479214 8.184915703 8.255356144 8.411809897 8.203229041 8.587892005 7.989394599 7.954660502 8.229105113 186477873 dxnA Organic Remediation Aromatics Heterocyclic aromatics Rhodococcus sp. HA01 9.378977314 9.399973665 9.480696515 9.032983977 8.593875978 8.78074912 8.391714213 8.606562653 8.406018297 8.735030294 8.588539947 9.02636301 119957662 nmoA Organic Remediation Aromatics Nitoaromatics Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.736588999 9.089936715 9.377415875 9.444502672 9.230652148 8.775888841 8.957677231 9.527971782 9.261180468 9.453302936 9.109056021 9.567996624 163663554 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Methylobacterium extorquens PA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 8.328973325 8.270310248 8.297462484 7.586326572 7.561743241 7.877859034 7.877705963 7.590845635 7.706784528 7.829111211 7.922104974 116666356 rubisco Carbon cycling Carbon fixation Methanosaeta thermophila PT superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosaetaceae;genus:Methanosaeta;species:Methanosaeta thermophila; 8.420173128 8.565124463 8.51900931 8.017833174 7.89590847 7.860042046 7.827366083 7.793562799 8.114522443 7.769911103 8.151009293 149949240 ChrA Metal Resistance Chromium Alkaliphilus metalliredigens QYMF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus metalliredigens; 8.889839572 8.900161095 8.878371048 8.493720139 8.493608658 8.428766946 8.022853479 8.027291617 8.056953732 8.02146705 8.136560892 8.405184642 67546638 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 9.592540438 9.323960056 9.491705765 9.030086617 9.046496466 8.84960569 8.981788786 8.824998707 9.063437159 9.123799368 9.368483871 9.201878142 29607729 pstA Stress Phosphate limitation Streptomyces avermitilis MA-4680 8.504514172 8.464603677 8.583554905 7.985198141 7.860202882 8.015393826 8.238553995 7.829590772 8.421546058 7.913197424 7.855867798 8.143731116 148254171 HBH Organic Remediation Aromatics BTEX and related aromatics Bradyrhizobium sp. BTAi1 8.14590107 8.418902172 8.326639583 8.375038247 8.579824775 8.606533672 8.596741749 8.870387562 8.622914666 9.160827176 9.022309201 8.774517897 149951884 alkH Organic Remediation Other Hydrocarbons Alkaliphilus metalliredigens QYMF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus metalliredigens; 9.545675601 9.516076703 9.838999408 9.041930589 8.912449632 8.826153128 8.796058834 8.708918931 8.78867346 8.817606142 8.722755695 9.090555889 225194092 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.990742833 9.124150488 9.113080136 8.299726422 8.313535824 8.201234607 7.948691243 8.243865313 8.221187203 8.386832924 8.316660217 8.425681794 225568291 fnr Stress Oxygen stress Clostridium hylemonae DSM 15053 7.183500179 6.969450506 6.619707704 7.447951261 77164396 ahpC Stress Oxygen stress Nitrosococcus oceani ATCC 19707 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 9.328199669 9.459057419 9.37454292 9.442565824 9.100251022 9.243768412 9.050405333 9.471862755 8.822467902 9.489955984 9.682115684 9.321098919 177671597 ppx Phosphorus Phosphorus utilization Micrococcus luteus NCTC 2665 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus;species:Micrococcus luteus; 8.546258734 8.727815699 8.765705024 8.300850031 8.173226437 8.181201793 7.994168246 7.99383024 8.33569255 8.075247023 7.904999951 8.157547421 116248957 cpnC Organic Remediation Other Hydrocarbons Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.410961105 8.526217875 8.700388622 8.250581239 8.307160437 8.526550541 8.232269695 8.373921005 8.595029703 8.336465597 8.374116201 118759659 nmoA Organic Remediation Aromatics Nitoaromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.477960962 8.698400134 8.314027235 8.138304121 8.376977106 8.355429285 8.502334634 8.532780872 8.710032252 8.613764765 99083289 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.976263436 8.118993883 8.249596895 7.151335519 7.13469727 7.078248227 6.81501169 7.232750854 77381580 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.771502485 8.693087447 8.558589029 8.870461177 8.603714722 8.3399347 71906013 pimF Organic Remediation Aromatics Aromatic carboxylic acid Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 9.05538851 9.516979814 9.107370079 8.196750204 9.179262608 9.351067098 49075306 SMR_antibiotics Antibiotic resistance transporter synthetic construct 8.368579085 8.232932603 7.367182641 7.555573192 7.902676466 8.141448907 7.293936385 8.361385201 7.512255581 7.378321913 7.476041167 218172479 pstC Stress Phosphate limitation Cyanothece sp. PCC 7424 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 9.21357327 9.091657622 9.279449465 9.150921482 9.414171748 9.609092343 9.135847683 9.457941492 9.237341907 9.222991287 9.430088059 9.197858949 75237068 CadA Metal Resistance Cadmium Escherichia coli E110019 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 8.171650809 8.01125999 7.839193607 7.857960525 8.042464348 7.812929517 7.805255542 7.97667255 7.852538325 7.730428475 29610016 TerZ Metal Resistance Tellurium Streptomyces avermitilis MA-4680 9.142799147 9.485814852 9.255822847 8.919813806 8.930350891 9.446704023 9.626497744 9.244287151 9.35039391 9.064975518 9.148759225 9.347471361 89067681 trzN Organic Remediation Herbicides related compound Oceanicola granulosus HTCC2516 8.823759225 8.471813062 8.648658632 8.543261416 8.546735334 8.371500711 8.244802191 8.205999428 8.33823196 8.139198091 8.306986958 27352484 pheA Organic Remediation Aromatics Other aromatics Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.558636816 8.267079042 8.283241748 7.844177313 7.862181561 8.01245173 7.850079737 7.570568884 8.065715925 7.785599387 8.106777969 7.848961205 115255025 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.986134617 9.086512774 9.1178421 8.404015304 8.579226008 8.631232981 9.088383484 8.22536168 8.923762963 8.396595922 8.48090007 8.46201981 82548049 catB Organic Remediation Aromatics BTEX and related aromatics Nocardia sp. C-14-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia; 8.652538858 8.822622398 8.91428544 8.672808916 8.736052348 8.42562918 8.684253305 9.051566134 8.734832591 8.806470029 8.490012459 8.591315436 170749679 fnr Stress Oxygen stress Methylobacterium radiotolerans JCM 2831 9.007705214 8.945407427 9.012532979 8.972465011 8.945339366 8.744678953 8.916082143 8.841647423 8.946678983 8.803355723 8.920864871 8.717539272 194292725 nmoA Organic Remediation Aromatics Nitoaromatics Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 8.331989984 8.065207573 8.053946195 8.055309832 8.232920393 7.94470667 7.967260539 8.22088326 7.883496876 8.327136166 7.876207475 229204749 pstA Stress Phosphate limitation Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 8.397827464 8.46401244 8.410727024 8.333333004 8.275999305 8.026304723 7.902554392 8.212471917 7.905234786 8.203813416 8.054719178 7.909146252 226726351 sox Sulphur Sulphur oxidation uncultured bacterium 9.067219746 8.782095038 8.664289649 9.613031919 9.453788436 9.673216633 8.771669239 9.574946925 8.55336733 9.280108202 9.574339522 8.99655303 29466004 norB Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.063361017 7.90147916 7.517114564 7.896068067 7.712896318 8.176414338 7.707973473 7.896657738 7.494065847 172040568 oxyR Stress Oxygen stress Corynebacterium urealyticum DSM 7109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium urealyticum; 9.429795363 9.26541552 8.973521272 8.848981663 8.880870601 8.876243475 8.824607806 8.914872907 8.861366975 9.076124635 95109949 iro virulence Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 8.22307719 8.276767205 8.384547288 8.105781585 8.106700598 8.07860803 7.917088788 8.124754791 8.019276725 8.281692248 8.23942385 7.917857649 241203838 glnA Stress Nitrogen limitation Rhizobium leguminosarum bv. trifolii WSM1325 8.140069872 8.145753586 8.148897362 8.095184203 7.817232959 7.962858708 8.371775766 8.186791646 7.738814728 7.732275214 7.704158341 206569701 cbeA Organic Remediation Aromatics Chlorinated aromatics Klebsiella pneumoniae 342 8.520970285 8.386611713 8.193343794 7.791356317 7.916086962 8.332104052 8.222997659 8.068479951 8.52641631 7.938777529 8.218713846 8.023594018 158318523 katE Stress Oxygen stress Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.737248142 8.693948436 8.905557111 8.43048314 8.182436104 8.366840657 8.293328653 8.23573183 7.742626652 8.301071717 8.34038508 8.227828984 17430533 proV Stress Osmotic stress Ralstonia solanacearum GMI1000 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 8.485324073 8.373050573 8.250243503 7.70339243 7.953238699 8.253329431 8.618373978 8.288785623 8.697781612 7.900554415 8.150535562 8.282472691 283579089 sigma_32 Stress Sigma factors Rhodopseudomonas palustris DX-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.223797418 8.073128655 8.103369404 7.696894176 7.888756123 7.664303548 7.68176056 7.403399454 7.71474238 7.572233687 7.634133959 7.677212741 90106259 nhh Organic Remediation Aromatics Nitoaromatics Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.391983193 8.055423559 7.868540465 8.225426829 8.049314177 7.774849248 8.151309088 7.722229649 115258561 xylA Carbon cycling Carbon degradation Hemicellulose Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.935353734 8.568532049 8.099017589 9.036700244 8.897284426 8.598583121 9.007734568 8.82894537 8.554534402 8.564961067 8.478962163 8.634959123 256817602 iro virulence Streptomyces griseoflavus Tu4000 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoflavus; 9.425545032 9.520731603 9.527809063 8.883175137 9.021037208 8.966364713 9.105758767 8.94235967 9.18208336 8.88242575 8.798253414 9.231263245 77917726 grpE Stress Heat shock Pelobacter carbinolicus DSM 2380 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter carbinolicus; 9.537998597 9.657342044 9.520515899 8.930229083 9.40561498 9.693469561 10.34837643 9.226274457 10.18108603 9.355119216 9.578315757 9.725486549 21449824 exoglucanase Carbon cycling Carbon degradation Cellulose Paenibacillus barcinonensis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 9.031340106 8.850613412 9.245554445 8.752285946 8.559829815 8.506121349 8.110497145 8.387614437 8.303237459 8.558957066 8.553916411 148254624 glnA Stress Nitrogen limitation Bradyrhizobium sp. BTAi1 9.091017661 8.935077406 8.989641923 8.182305524 8.324355001 8.669949457 8.790887925 7.953088013 8.687094722 8.542938995 8.547943339 8.664299509 28870458 iro virulence Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 8.30607786 8.408742454 8.242065387 7.593687154 7.859336526 8.213836409 8.261108 7.558419752 8.105236583 7.94373818 7.966921027 7.886970357 148502116 iro virulence Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 9.07881357 8.443560695 9.301963024 8.659863934 8.33757503 8.998889351 9.065677151 8.936953284 8.580843169 8.612916602 8.250890932 28542615 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.236220389 8.654016949 8.198000128 8.382838242 8.245515458 8.279103107 8.852385926 118468723 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.201864458 7.987564726 8.11153398 7.762892099 7.519914242 8.078493073 7.595558975 7.333791313 7.942949961 7.484200705 7.361606894 7.500963447 219950364 sigma_24 Stress Sigma factors Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 10.08988496 10.43803792 10.28977835 10.78242317 10.73629276 10.45633266 10.67532344 10.73528595 10.54957835 10.61744755 10.45964286 9.944908465 145848370 exochitinase Carbon cycling Carbon degradation Chitin Ruminococcus torques ATCC 27756 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus torques; 7.239953795 7.433902394 7.214708707 6.919252894 7.406719864 229823592 clpC Stress Protein stress Catonella morbi ATCC 51271 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Catonella;species:Catonella morbi; 8.414108306 7.75162447 7.997360276 7.652036291 7.549377212 7.45327491 7.531055736 8.224355004 7.523511837 7.273819662 7.485515044 86168014 pstB Stress Phosphate limitation Synechococcus sp. RS9917 9.099795095 9.105405521 9.393452539 8.813924594 8.688006016 8.565720046 8.628923433 8.705704756 8.513571334 8.784796549 8.786390973 8.850283874 260585602 amoA Nitrogen Nitrification superkingdom:Archaea; 7.762964011 7.926558209 7.568772455 7.755638052 7.507215064 7.877131536 7.804249093 7.702080541 7.556296403 98977998 CusF Metal Resistance Copper Sphingopyxis alaskensis RB2256 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 7.973942858 7.714514036 7.560017163 7.489240249 7.438431326 7.723011905 7.44700511 7.492817634 7.614341373 77996098 napA Nitrogen Dissimilatory N reduction Carboxydothermus hydrogenoformans Z-2901 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Carboxydothermus;species:Carboxydothermus hydrogenoformans; 9.192525239 9.24041949 9.28018825 8.555250987 8.625244507 8.580839071 8.498250032 8.548534855 8.606293718 8.669899658 8.538174383 8.637047503 8388764 BchY other category chlorophyllide reductase Erythrobacter longus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 9.548390496 9.595662863 9.21709628 8.265179884 8.475988908 8.601205839 9.048724301 8.743939977 8.901170398 133912307 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 8.278494497 8.64189126 8.315327139 7.864412586 8.319144873 8.529339553 8.524338937 8.514000948 8.392480807 8.516284374 8.246053005 8.448218226 163811659 Ni_Fe_hydrogenase Energy process Energy process Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 8.51316854 8.681345101 8.586915065 7.944942456 7.968425099 7.847461878 7.967969633 7.794480657 7.71541802 7.756168327 7.9057713 8.011114069 116063246 aoxB Metal Resistance Arsenic Aeropyrum pernix K1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Aeropyrum;species:Aeropyrum pernix; 9.685166854 9.640365711 9.728741371 8.996470145 9.114217888 9.118946627 9.213608948 8.920557076 9.284500204 9.283862385 9.427908191 9.320736832 218438658 nirA Nitrogen Assimilatory N reduction Cyanothece sp. PCC 7424 7.462534921 7.113857727 7.230407737 7.348676128 6.926944744 7.34813142 147919724 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon RC-I superkingdom:Archaea;phylum:Euryarchaeota; 9.643234407 9.848386723 9.469115825 9.854891448 9.974676652 9.504072356 9.899611708 10.29763096 9.779231379 9.80675044 9.563644473 9.991494186 218780499 pcc Carbon cycling Carbon fixation Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 8.060897239 7.916502299 7.373797245 7.699173157 7.392857111 6.894610292 7.211964721 115359065 proX Stress Osmotic stress Burkholderia ambifaria AMMD superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 8.079850407 7.948392543 7.836630907 7.160104652 7.487249273 7.73817099 7.870228274 7.906211976 156531217 ArsC Metal Resistance Arsenic Enterobacter sakazakii ATCC BAA-894 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 10.65473514 10.6249381 10.62456645 10.08145466 10.12943202 9.724760551 118171657 tfdA Organic Remediation Aromatics Chlorinated aromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 9.215715562 9.267430966 9.611129718 9.023508724 8.78902747 8.741539598 8.837882998 9.161818865 9.099289327 9.150061214 9.222077679 40253069 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.45939608 8.546697141 8.697231011 7.981906805 7.687187688 8.104246514 7.890939081 7.662086365 8.025032453 7.823525717 7.508414134 8.044399283 134293573 fnr Stress Oxygen stress Burkholderia vietnamiensis G4 10.22231172 10.22916655 10.25580828 9.910376218 9.861687717 9.875026672 10.20910313 9.901641285 10.34456426 9.864902553 9.967752035 9.685368506 254447298 nasA Nitrogen Assimilatory N reduction gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.752258858 8.804917996 8.707772395 8.502753841 8.717165836 9.112238015 8.901488671 9.017055503 8.899031703 8.734382323 9.161140272 8.806314944 112462135 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.385048793 9.429577495 9.444696163 8.757560918 8.552232794 8.470704786 8.3409569 8.518618342 8.37227872 8.34911879 8.495771829 8.794595673 116694546 bphF1 Organic Remediation Aromatics Polycyclic aromatics Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.333822187 8.462586292 8.623943818 8.705233264 8.314466496 7.891063688 8.052729471 8.330823314 8.420603268 8.511172103 8.365490087 8.600816054 197790624 CopA Metal Resistance Copper Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 8.549382926 8.709019631 8.349082894 8.197587646 8.26837612 8.242137285 8.68541259 8.116162627 8.966851374 8.132290927 8.159702259 8.019345099 37521533 chnB Organic Remediation Other Hydrocarbons Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 9.776761851 9.58501705 9.578489276 9.850361034 9.802056521 9.42198021 9.516157422 9.918027918 9.510072523 9.813033079 9.591384119 9.900369322 225044504 clpC Stress Protein stress Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 9.176760772 9.193589171 9.261862341 8.768586177 8.933122358 8.550753882 8.673899377 8.130120618 8.513769766 8.438166359 8.703355664 99083095 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.754218036 8.598203093 8.83884214 8.120159594 7.953806907 8.094672561 7.767677668 7.696822231 8.04931245 7.876992125 7.879918087 8.078954649 156534913 amyA Carbon cycling Carbon degradation Starch Enterobacter sakazakii ATCC BAA-894 8.658657619 8.686052882 9.040319051 8.041612622 7.994232768 8.155053435 7.969351272 7.926853942 8.273562386 167348194 tfdA Organic Remediation Aromatics Chlorinated aromatics Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.992280744 9.336544533 8.746895774 8.955321367 9.286714483 9.752016944 9.924860739 9.414802106 9.380860471 9.164099337 9.589113392 9.391628731 119458441 mauAB Organic Remediation Herbicides related compound marine gamma proteobacterium HTCC2080 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.243921884 8.40332082 8.05000597 8.124718911 7.73514737 7.941564089 8.374213328 8.687233997 8.218546573 7.88128003 8.163844949 116748148 pstB Stress Phosphate limitation Syntrophobacter fumaroxidans MPOB 8.192952402 8.017888534 8.136970203 7.624285181 7.682382024 8.262848741 145215517 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.683386955 8.684979438 8.594052496 7.939699346 8.068507396 7.803089554 7.774607654 7.929637882 7.993307233 7.934542629 8.042874473 238580416 phenol_oxidase Carbon cycling Carbon degradation Lignin Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 8.687437492 8.678459216 7.983472416 7.917864177 7.991653877 8.025178134 8.32832385 7.659867742 8.20442934 8.141624278 8.198500637 120593863 katE Stress Oxygen stress Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 9.135086749 8.866204834 8.810713542 8.931498393 8.655716199 8.438614268 8.712327099 8.543404885 8.730398813 8.736263725 8.948835551 8.58283739 133737398 pimF Organic Remediation Aromatics Aromatic carboxylic acid Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 8.818387191 8.90860664 8.856554418 8.82772213 8.405431962 8.36124231 8.415446742 8.441217121 8.570713238 8.715535206 8.458604768 8.594444787 83943988 linB Organic Remediation Pesticides related compound Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 8.859803197 8.532645364 8.484639497 8.2651017 8.054143699 8.298980985 8.576323156 8.315836549 8.679160081 8.036731728 8.078333506 7.934269556 237798696 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 8.333803247 8.008525928 8.047693469 7.797680512 7.932721217 7.980255312 7.803803842 8.088942861 7.964610254 8.05533184 8.039071773 7.859687938 38569321 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. FL2 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 8.432820801 7.898401728 8.372016467 7.576481516 7.733235717 7.549311962 7.444654656 7.324421064 7.886911525 7.208748153 7.279635829 7.705729698 196199584 pstS Stress Phosphate limitation Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.116826652 7.164111465 7.199494744 6.704496349 6.908454738 7.525761735 6.961540295 7.309558982 23014714 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 9.332813669 9.546657069 9.27496271 8.876696226 9.198528394 9.689559607 9.831054472 9.240226664 9.902199278 9.267747249 9.197193266 9.158001763 198262392 alkK Organic Remediation Others gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.050475717 8.269122547 6.918176654 6.981847502 7.275744608 6.516394264 7.353702535 119865868 phn Organic Remediation Herbicides related compound Psychromonas ingrahamii 37 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas;species:Psychromonas ingrahamii; 8.279195914 8.177454629 8.372464661 8.111350565 8.587895986 8.483282426 8.650272005 8.711320013 8.769629893 8.62825577 8.618225629 158444652 apu Carbon cycling Carbon degradation Starch Faecalibacterium prausnitzii M21/2 10.01178645 10.15411589 10.13396555 9.412647369 9.237967358 9.837979667 9.787061817 9.363157791 9.834294016 9.624868843 9.669510179 9.726587543 206676443 nhh Organic Remediation Aromatics Nitoaromatics Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.360295772 8.071964001 8.628934239 8.319319714 8.472679933 8.993012261 8.199336137 115424147 phoB Stress Phosphate limitation Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 8.314516094 8.276222821 8.342312753 7.974794211 7.737297939 8.203109218 8.248219408 8.164502756 8.293214725 8.347329407 7.955303321 154159079 phtA Organic Remediation Aromatics Aromatic carboxylic acid Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.362978921 8.312419014 8.217370742 8.260445119 8.827784533 8.542657333 8.673749892 8.642607727 8.487160424 88855479 phenol_oxidase Carbon cycling Carbon degradation Lignin marine actinobacterium PHSC20C1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 8.729635115 8.692475239 9.03244106 8.778194119 8.30688156 8.172577841 7.691343126 8.396509228 8.230445846 8.446854234 8.321095285 8.617223931 99083357 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.873824442 8.835917868 8.954420205 8.415425994 8.344932069 8.283493011 8.243729433 8.091645361 8.220333232 8.242589972 8.191622255 8.551609447 156932788 MFS_antibiotic Antibiotic resistance transporter Enterobacter sakazakii ATCC BAA-894 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 9.221896513 9.301703277 9.246891493 8.673186571 8.579212992 8.484403772 8.560090204 9.221831241 8.471371256 8.559269495 8.16318647 153009961 fnr Stress Oxygen stress Ochrobactrum anthropi ATCC 49188 8.444054101 8.156481103 8.309668234 8.262276983 8.100026739 8.168793612 8.40915228 8.272828996 8.353609973 8.202710966 8.230642516 8.146884798 119226156 gyrB other category gyrB Rhodococcus zopfii superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.4118914 8.297391102 8.176182176 7.591266397 7.591383855 8.019195864 7.770869099 7.759020555 7.77280156 7.687329253 17549599 mer Metal Resistance Mercury Ralstonia solanacearum GMI1000 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 9.156599155 8.897836515 9.159418451 8.499872883 8.689473225 8.52913965 8.819982462 8.268221918 8.762717337 8.728111022 8.528366269 8.559437169 147886254 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 8.179181417 8.470872244 8.266242793 8.555790561 8.211005718 7.995260262 8.533469758 8.510218809 8.645158901 8.105250105 7.869084441 8.107651567 15127832 msmABCD Organic Remediation Others Marinosulfonomonas methylotropha superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Marinosulfonomonas; 7.961460638 8.511132564 8.301267856 8.590698326 8.615234465 8.36970205 8.421854845 8.814739859 8.569011081 8.653482017 8.184395813 87281302 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.881559425 8.749115939 8.558224888 8.962240669 8.557878738 8.541440366 9.042195111 8.887709112 8.754562132 8.829999122 8.88581054 8.504839601 256036134 endochitinase Carbon cycling Carbon degradation Chitin Chitinophaga pinensis DSM 2588 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 9.285674445 9.134371977 9.176830674 8.818243282 8.658401924 8.513212201 8.648476914 8.598516034 8.45182231 8.664040801 8.533600914 8.741964014 114798820 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 9.753032797 9.755214216 9.892341925 9.277245215 9.168234622 8.894550556 8.819971789 8.83905674 8.954540206 8.951220179 9.26816426 159043220 CopA Metal Resistance Copper Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 9.162339694 9.085805163 9.004918506 8.857791342 8.854570565 8.666796854 8.735172275 9.208586226 8.949382266 9.031215343 8.939247061 8.810250168 16330432 pstB Stress Phosphate limitation Synechocystis sp. PCC 6803 9.341808726 9.238135243 9.439146792 8.587530206 8.542187921 8.651727869 8.190596461 8.254515389 8.294220957 8.243972786 8.453473718 8.724204093 188022326 CopA Metal Resistance Copper Providencia stuartii ATCC 25827 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia stuartii; 9.060335963 9.051786904 9.227132397 8.702546816 8.472174699 8.539003004 8.227153315 8.353492295 8.228728831 8.453100744 8.338723903 8.665219979 256672983 pstB Stress Phosphate limitation Streptomyces sp. AA4 9.164251411 8.775403185 9.002621278 8.908776531 8.614368911 8.427890765 8.491603373 8.839971749 260552821 ctsR Stress Protein stress Lactobacillus fermentum 28-3-CHN superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus fermentum; 9.129396919 8.759057363 8.871414044 8.371810721 8.177815657 8.146959076 8.111787493 7.89048382 8.36275471 8.006107455 7.927793192 8.178472484 227069637 NiR Nitrogen Assimilatory N reduction uncultured archaeon 9.16163947 8.906506129 9.137530385 8.367478128 8.510830062 8.511947353 8.60144951 8.505332168 8.602249276 8.589217371 8.592835762 8.746442426 224367147 MATE_antibiotic Antibiotic resistance transporter Desulfobacterium autotrophicum HRM2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium;species:Desulfobacterium autotrophicum; 8.479839595 8.778147253 8.596151047 8.079870995 8.234074357 7.976557359 7.852645649 7.459255439 8.439527095 7.766812296 7.480324829 8.016465192 108768604 SMR_antibiotics Antibiotic resistance transporter Mycobacterium sp. MCS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.787542932 8.921744767 8.764990568 8.488259897 8.537496921 8.346630784 8.614378209 9.217177015 8.681724502 8.684607994 8.593352112 8.885469918 120431228 phenol_oxidase Carbon cycling Carbon degradation Lignin Sclerotinia minor superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia; 8.588913111 8.715845162 8.659385514 8.201767228 7.973737328 8.309094703 8.604181785 7.554091831 7.951710196 8.194755852 8.092170055 113881459 catB Organic Remediation Aromatics BTEX and related aromatics Synechococcus sp. CC9311 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.968407013 8.834396262 9.262398903 8.564370599 8.394485124 8.365106663 8.314107015 8.178213495 8.446308429 8.572585395 8.431521525 8.563452258 91790536 pimF Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 8.269452054 8.158378814 8.308911634 7.910186198 7.810510729 7.549850232 7.522363451 8.129807566 7.813216267 7.704914775 7.866746525 126212762 AceB Carbon cycling Carbon degradation others Pichia stipitis CBS 6054 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Scheffersomyces;species:Scheffersomyces stipitis; 8.418649464 7.959426526 8.120663203 8.420003731 8.039296866 7.873367757 8.140112042 8.237026695 8.314120657 8.25367103 8.388045074 7.744207958 23013981 bco Organic Remediation Aromatics Aromatic carboxylic acid Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 8.21274654 8.19282395 8.627153674 8.473943236 8.079100698 8.523454756 8.452001637 8.347782949 8.370007811 8.118196701 8.053223411 160934490 ara Carbon cycling Carbon degradation Hemicellulose Clostridium leptum DSM 753 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 8.767570177 8.68150564 8.76050232 8.416140326 8.585230343 8.538439575 8.600536819 8.498535988 8.665697554 8.784285868 8.821684124 8.793459102 71842845 scaffold Bacteria phage STRUCTURAL Enterobacteria phage NC3 family:Microviridae;genus:Microvirus;species:Enterobacteria phage WA13 sensu lato; 7.028379467 6.753854108 187478149 silC Metal Resistance Silver Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 9.324445181 9.393344958 9.327159547 8.627952391 8.688282316 8.848328895 9.236541086 8.711082581 8.453424267 8.886184373 9.04649669 8.775778646 188535021 TerC Metal Resistance Tellurium Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 9.204360396 9.07329736 9.110474131 8.455237836 8.484053515 8.52648136 8.421700046 8.392467678 8.542533423 84690992 iro virulence Parvularcula bermudensis HTCC2503 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 8.64482006 8.638138507 8.604441002 8.612534053 8.450386709 8.272234507 8.122817295 8.477926251 8.489797392 8.305180469 8.316441279 8.334049424 119868942 SMR_antibiotics Antibiotic resistance transporter Mycobacterium sp. KMS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.440539661 8.077113014 8.181481666 8.36222465 8.414882911 8.417177132 8.407656092 8.236550405 8.426176539 8.016620156 8.056678499 7.688114254 254473580 sox Sulphur Sulphur oxidation Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 8.272653424 8.357179769 7.572254589 7.437141408 7.572470329 7.532575478 7.454059544 7.948965225 7.7398366 7.772970192 7.858287188 17739598 CopA Metal Resistance Copper Agrobacterium tumefaciens str. C58 8.448596903 8.55332716 8.424397366 8.142586577 8.378187788 8.305065648 7.920266468 8.402928017 8.231567345 8.47132761 8.725657631 8.324282858 221734381 pstC Stress Phosphate limitation Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 8.704924827 8.476046263 8.287918314 8.62942095 8.927401824 8.983453149 8.743466525 8.839255192 8.431346898 8.548909617 8.473020681 86158438 TerC Metal Resistance Tellurium Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 8.496453504 8.424032582 8.323270281 7.995090526 7.873475961 8.134563772 8.153850477 6.663574001 8.128181101 7.688418807 7.675350037 7.828814758 72397913 MFS_antibiotic Antibiotic resistance transporter Methanosarcina barkeri str. Fusaro superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina barkeri; 8.679709272 8.312729427 8.202866033 7.847880725 7.990895575 8.105395421 7.898762944 8.470519168 8.066732686 7.940965731 7.932716413 226835665 SMR_antibiotics Antibiotic resistance transporter Acinetobacter sp. ATCC 27244 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 8.452251716 8.460071315 8.705171388 7.970791147 7.618471318 7.699492012 7.489528796 7.432056981 7.888511194 116634753 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.983661594 8.758425867 9.001025839 8.156937469 7.998840362 8.297857543 8.36354958 8.113607474 8.367746943 8.385028775 8.419423872 8.604548674 184185965 catechol_B Organic Remediation Aromatics Other aromatics carbazole-degrading bacterium CAR-SF superkingdom:Bacteria; 8.255989556 8.248451362 8.32586078 8.585729901 8.535601882 8.668944596 8.354177893 8.82937532 8.612758409 8.598214455 8.556052176 8.584558434 62512302 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.540852566 8.421768044 8.279576283 8.389904574 8.468496041 8.048115711 8.460707262 8.84872409 8.556816931 8.722741572 8.39307881 77976517 TerC Metal Resistance Tellurium Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 8.9839042 8.926561799 8.822928409 8.697346336 8.679150208 8.676922041 8.887707059 9.204935285 9.016464716 9.242557684 9.107100118 9.136271803 218680270 GroES Stress Heat shock Rhizobium etli CIAT 894 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.91337371 8.872102053 8.614438321 8.006731372 8.535166268 8.541015727 8.856629617 7.904252454 8.479114573 7.931738855 8.308787819 8.012701973 27379946 glnA Stress Nitrogen limitation Bradyrhizobium japonicum USDA 110 8.539780181 8.732233909 8.743941034 8.783305882 8.60421237 8.300558868 8.733259101 8.607950287 8.586248504 8.487705294 8.367846649 8.578258952 237846101 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.100967637 8.492393594 8.520473961 8.061841257 8.094282603 8.050050963 8.452235872 8.308447971 8.178199771 8.594740879 8.504567783 8.319248006 169631451 akbF Organic Remediation Aromatics BTEX and related aromatics Mycobacterium abscessus 8.695826517 7.988963668 7.975564738 7.677735688 7.677374962 7.590684655 7.750476748 7.692229449 7.657972417 7.452738571 118504749 CopA Metal Resistance Copper Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 8.857654132 9.095859832 9.008139905 8.906182833 8.788406118 8.68394779 8.472095384 8.560544582 8.472785952 8.57397975 8.706201473 218322550 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Vibrio splendidus LGP32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 7.008122517 6.890389833 7.46242297 77543336 arhA Organic Remediation Aromatics Heterocyclic aromatics Sphingomonas sp. EPA505 8.342989562 8.524290939 8.300581713 8.43721733 8.367004131 8.399832557 8.629086546 8.294642585 8.843307503 8.268960951 8.132144049 8.18769879 111023462 ppk Phosphorus Phosphorus utilization Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.275975266 8.313357429 8.334741295 8.585013645 8.542639559 8.305497603 8.368997933 8.827853128 8.714551905 8.73311776 8.248207372 8.383226271 170690255 silC Metal Resistance Silver Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 8.087481077 8.014553109 8.20700366 7.877754095 7.732372535 7.561088766 7.882330745 8.33591772 7.924661207 8.272789801 8.140703799 8.169161051 91717438 pilin virulence pilin Candidatus Pelagibacter ubique HTCC1002 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales;genus:Candidatus Pelagibacter;species:Candidatus Pelagibacter ubique; 7.961570789 7.737299179 109452516 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.179793723 8.06649938 6.916767607 7.022847985 197295289 nmoA Organic Remediation Aromatics Nitoaromatics Burkholderia cenocepacia J2315 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 9.775057575 9.930068271 9.957991747 9.281048363 9.493757333 9.507867731 9.704891549 9.238593452 9.614621759 9.619481428 9.605104459 9.526990328 221157805 glnA Stress Nitrogen limitation Thermomicrobium roseum DSM 5159 8.073441093 8.199390936 7.566756195 7.634485691 7.952083726 7.85192926 7.62268729 8.043171874 7.745683075 7.783847542 7.71950795 255295268 ahpC Stress Oxygen stress Rothia mucilaginosa ATCC 25296 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Rothia;species:Rothia mucilaginosa; 8.140012306 8.274625233 8.709631988 8.347728499 8.478580408 8.10464131 7.963671828 8.976100532 8.203378522 8.88352988 8.802319289 8.641158746 118690099 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Metallosphaera sedula DSM 5348 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Metallosphaera;species:Metallosphaera sedula; 8.352166789 8.261868163 8.590953865 7.528385196 7.648334927 7.352446184 7.107252501 7.319309017 7.339440275 7.545135885 133948864 Catechol Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 8.513382581 8.772332304 8.270548737 8.212508103 8.217676803 8.105273116 8.454078661 8.494366335 8.214825201 8.601520502 8.586635982 8.447692364 170774140 gyrB other category gyrB Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 8.514151081 8.665614734 8.261249826 9.106927009 8.919672335 8.812251093 9.572147091 8.858791592 9.356400774 9.237856113 9.001916501 189494456 gyrB other category gyrB Chlorobium phaeobacteroides BS1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 7.958552306 7.86561715 8.233239231 6.887810245 6.943450136 73917174 nagL Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 8.314854481 8.197895024 8.259125868 8.126994017 8.099871417 8.05404769 8.404859913 8.376651852 8.218244603 8.018917807 7.768674792 218892786 MFS_antibiotic Antibiotic resistance transporter Pseudomonas aeruginosa LESB58 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.620281605 8.775776274 8.51051658 8.06797007 8.809070483 8.884422261 8.664659394 9.134496272 8.659404953 8.557485274 8.623735728 68135577 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.253623647 8.010770772 8.334719016 7.550247704 7.408692747 7.396563889 7.132892138 7.397496486 7.715862651 7.43773839 7.242404465 7.464596755 284049285 cap virulence capsule Acidaminococcus fermentans DSM 20731 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Acidaminococcus;species:Acidaminococcus fermentans; 8.674845253 8.855225826 8.882873577 8.286645789 8.445540959 8.424851274 8.251068974 8.542802677 8.39210862 8.6347162 8.616672785 8.643745334 119899262 exaA Organic Remediation Chlorinated solvents Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 9.735691624 9.570693499 9.891296563 9.54336868 9.464367234 8.968578202 9.562298037 9.966287987 9.912138768 9.63760575 9.413338704 9.878302735 121594318 katE Stress Oxygen stress Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 9.431375876 9.189154592 9.316889886 9.599461961 9.275126499 9.307024425 9.663092945 9.507098256 9.290310953 9.273615837 9.456024294 9.197596853 145300894 katE Stress Oxygen stress Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 8.582750344 8.752371923 8.436784321 7.98267477 8.33669143 8.806428651 8.965395322 8.536447212 8.766946182 8.384128189 8.718945447 8.663841147 217979543 pcc Carbon cycling Carbon fixation Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 8.81862086 8.591965298 8.9308188 8.793665457 8.519134465 8.173947947 8.471261786 8.574879299 8.483242116 8.42406851 8.512562962 8.196662324 74057796 APS_AprB Sulphur adenylylsulfate reductase Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 8.621982333 8.523764163 8.724345146 8.312364072 8.407502484 8.220932133 8.17577258 8.080501856 8.361624831 8.162490093 8.220110533 8.164407421 237685023 pilin virulence pilin Teredinibacter turnerae T7901 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 8.253836831 8.61767283 8.786025952 7.680258085 8.201112927 8.384786682 7.839117226 8.00233847 255301434 katE Stress Oxygen stress Campylobacter showae RM3277 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter showae; 8.29926456 7.966773745 7.943984254 8.570480365 8.072169036 8.257412529 7.611588192 7.855563812 7.809281112 61807988 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.092588579 8.260468997 7.246833154 7.101614688 7.583281627 7.867838671 7.158698163 8.296396105 7.432940525 7.491006105 7.555464992 126236383 sigma_24 Stress Sigma factors Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.258927669 8.351443019 8.339127496 8.619802963 8.27439564 8.129672011 8.368224699 8.386554 8.322131441 8.247268013 8.430192099 8.488505418 241879482 dsrA Sulphur sulfite reductase Desulfovibrio vulgaris RCH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 8.588846972 8.234161865 8.380167026 8.38672428 8.053701417 7.854545268 8.165088654 7.995166493 8.209291288 8.100782289 8.195439182 113969167 ChrA Metal Resistance Chromium Shewanella sp. MR-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 7.507783113 7.779561171 7.651850032 7.882817155 157408796 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 8.451037744 8.462432582 8.183587643 8.185502839 8.358141323 8.52305592 7.992342232 8.640485312 8.255876737 8.208327592 8.406629393 209519627 sigma_32 Stress Sigma factors Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 9.066636496 8.674492764 8.40669057 9.395383303 9.276701923 9.257400017 8.823702221 9.424969625 9.166594669 9.051063438 8.978368611 8.815865332 45736561 gyrB other category gyrB Leptospira santarosai superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira; 8.729398842 8.808287111 8.767575635 8.027810707 7.932952724 8.172452091 8.09954379 7.858727045 8.512784912 8.158507213 8.517551595 8.281234159 171910108 glucoamylase Carbon cycling Carbon degradation Starch Verrucomicrobium spinosum DSM 4136 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Verrucomicrobium;species:Verrucomicrobium spinosum; 8.433842591 8.816344986 8.80705313 8.45880951 8.357180244 8.297746101 8.764312854 8.39821731 8.828940378 8.284011613 8.050753502 8.215437824 111151982 TerD Metal Resistance Tellurium Frankia alni ACN14a 8.498225356 8.215448509 8.588775245 8.074033845 8.141319758 7.935436723 8.187059924 8.006931587 8.424820761 8.02281577 7.813567923 7.981547704 225003238 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Flavobacteria bacterium MS024-2A superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria; 8.884429185 8.863455835 8.813876314 8.193181505 8.120341503 8.276315414 8.040219198 7.951393155 8.034992655 7.688315352 8.305760413 146401626 NADH_quinone_oxidoreductase Bioleaching Electron transport Acidiphilium cryptum JF-5 8.430197262 8.275503209 8.108888405 8.054555625 7.966218006 7.985897601 7.822453363 8.094030452 8.119810821 8.294237785 8.1936745 219688866 carA Organic Remediation Aromatics Heterocyclic aromatics Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 9.237485457 9.026810566 9.086377995 8.786052135 8.772376505 8.638575682 8.525756414 8.616066365 8.666849322 8.506329895 8.335676118 8.715973005 110341494 ZntA Metal Resistance Zinc Chlorobium ferrooxidans DSM 13031 8.764559921 8.775108284 8.434116599 8.871131649 8.703032714 8.913260055 8.92554807 8.743115149 8.540110255 8.432026946 8.795170793 8.472185295 73539106 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.406181884 8.195400003 8.593532905 7.948148798 7.710342302 7.594386084 7.567231936 7.323074489 8.095179479 7.479664892 7.314803095 7.632540976 152986945 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.124382756 8.293629774 8.321787012 8.631771359 8.495062442 8.405129345 8.123071811 8.444446656 8.490118639 8.370477035 8.36326294 8.112275211 34103990 SMR_antibiotics Antibiotic resistance transporter Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 8.395154924 8.431023915 8.213920653 8.105662703 7.979047643 7.902838896 7.631128504 7.685929835 7.991183977 7.95264514 7.493938888 7.915817086 73540090 AceA Carbon cycling Carbon degradation others Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.996612717 7.784485703 7.699726811 7.499967538 7.421844039 7.521635523 7.761589744 145564512 SMR_antibiotics Antibiotic resistance transporter Shewanella putrefaciens CN-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella putrefaciens; 8.315897907 8.343425878 7.535389068 7.873774675 8.143776211 8.27609386 7.955674426 8.133048514 7.692998502 7.770874329 7.867283068 109290129 terminase_small_subunit Bacteria phage REPLICATION Aeromonas phage 25 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 8.288180857 8.341166828 8.209048965 7.480784279 7.453659025 7.596246466 7.636337539 7.784588544 7.405215488 7.745120596 116695343 fnr Stress Oxygen stress Ralstonia eutropha H16 8.403973825 8.462022413 8.663605804 8.093991765 7.95128794 7.860299018 7.722690579 7.509511951 7.831507326 168193335 fnr Stress Oxygen stress Methylobacterium sp. 4-46 9.272782052 9.412601342 9.363010356 9.46257557 9.749005507 9.58181502 9.521557647 10.07104281 9.358243486 9.799624729 9.663979324 9.791590609 126731220 pstB Stress Phosphate limitation Sagittula stellata E-37 8.734901092 8.604934643 9.132403122 9.113038901 9.025039625 8.558025762 9.472244686 8.724929885 8.972410522 9.044908129 9.120688884 157088429 nitA Organic Remediation Aromatics Other aromatics Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.863546025 8.787951596 8.609463459 8.882226291 8.675223487 8.614674606 8.985116245 8.860625105 9.242338679 9.144582529 9.238749819 8.767699284 89045879 atzD Organic Remediation Herbicides related compound Oceanicola granulosus HTCC2516 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 9.0652043 8.946459202 8.925743797 8.694924088 8.96091918 8.673854557 8.483891355 8.686096125 8.706059086 8.593615655 8.855234577 8.701147067 148259621 NADH_ubiquinone_oxidoreductase Bioleaching Electron transport Acidiphilium cryptum JF-5 8.734323002 8.527021081 8.674646673 8.553010457 8.531023165 8.371819344 7.992820498 8.446649894 8.356259225 8.40312059 8.581795482 8.427568231 84043095 Catechol Organic Remediation Aromatics Other aromatics uncultured bacterium 8.366497462 8.364054878 8.495758782 7.908101652 8.141840335 7.947541376 7.945701901 8.113496335 8.392085138 7.968384393 8.111656927 8.438312155 158315918 pcpB Organic Remediation Herbicides related compound Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 9.267952693 9.835470656 9.337194021 9.062246218 9.345676239 9.854238416 10.0590654 9.747629685 9.763798576 9.606218195 9.775915279 9.928611951 126652425 gyrB other category gyrB Bacillus sp. B14905 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.262608353 7.171820303 7.305702339 7.001160361 7.513044883 85825983 AceB Carbon cycling Carbon degradation others Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.488538623 8.49876618 8.36549008 8.183597776 7.614962146 8.031865994 8.200340998 7.928995932 8.008851064 7.915196344 8.051498265 7.981033266 83838965 SMR_antibiotics Antibiotic resistance transporter Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 8.21578224 8.044611216 8.120189319 8.21565582 8.263544857 7.836465742 8.239819431 7.935480392 8.084742695 7.702751034 148261061 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Acidiphilium cryptum JF-5 8.482442541 8.437308279 8.426287367 7.37055608 7.60413006 7.671505336 7.711389545 7.813999588 8.015218342 229364864 AceB Carbon cycling Carbon degradation others Pseudomonas fluorescens SBW25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.292321925 8.083826248 7.793940843 7.807599041 8.299435116 7.88225236 7.557320578 8.368310359 7.800855171 7.956094799 7.959937915 115253419 tftH Organic Remediation Aromatics Chlorinated aromatics Rhizobium leguminosarum bv. viciae 3841 9.772812913 9.715820106 9.690777442 9.402034711 8.929693305 9.251001507 9.857429338 9.145231373 9.641621456 9.227074573 197774348 Tet Antibiotic resistance other Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 9.280676513 9.453221017 9.603703735 9.198205227 9.110647541 8.912002593 9.030633283 9.088512475 8.937400726 9.013240194 8.93111006 9.108897456 56566202 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.371908017 8.212928225 8.135260614 8.341181218 8.035293383 7.909682226 8.073683791 8.011528412 7.996217835 7.857042361 68344271 iro virulence Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.523389984 8.096038544 8.47056421 7.79721495 7.758950139 7.859317938 7.484254821 8.035992194 7.661831888 7.927746956 7.79434655 7.702483468 15805931 gyrB other category gyrB Deinococcus radiodurans R1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 8.51424609 8.375770544 8.560936995 8.054126974 8.004643698 7.715296669 7.610609481 7.78336659 7.845740313 7.83216195 7.953886727 74484309 cmtAb Organic Remediation Aromatics Other aromatics Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 9.924871585 9.712903768 9.908124657 9.408370933 8.531069062 9.283022343 9.970680369 9.799145311 9.56379298 9.285850768 9.383394497 9.632143216 119482922 cellobiase Carbon cycling Carbon degradation Cellulose Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 9.77045498 9.197976815 8.334612584 9.789947251 9.777183114 9.808995565 9.271648159 9.702441773 9.168054913 9.506199307 9.61061861 8.77815266 146192988 fnr Stress Oxygen stress Bradyrhizobium sp. ORS278 8.803116594 8.933652758 9.223979953 8.484544588 8.360565151 8.340315956 8.532403011 8.194018084 8.624199066 8.262258842 8.418535181 8.619335812 198259400 pstB Stress Phosphate limitation Verrucomicrobiae bacterium DG1235 8.997893904 8.995688781 9.170980859 8.645089103 8.658384452 8.678822679 29137736 narG Nitrogen Denitrification Salmonella enterica subsp. enterica serovar Typhi Ty2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 8.908826265 8.48548505 8.336225271 8.788433113 8.90748958 8.983462644 8.906332396 9.256263502 8.907963227 9.221656297 9.5018372 9.209333727 119391473 narG Nitrogen Denitrification uncultured bacterium 8.294430504 8.310374797 8.391428067 7.646326101 7.661210033 7.79657504 7.630601407 7.834392872 7.763005054 7.767612737 40062869 bphC Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 442 superkingdom:Bacteria; 9.441659294 9.534279395 9.67327976 9.038400845 8.476402943 8.637757307 8.64502274 8.454695156 8.458042948 8.879406308 8.697622437 9.034800832 120404126 atzA Organic Remediation Herbicides related compound Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 9.057152346 9.13000674 9.171656349 8.776455188 8.592775261 8.575166028 8.796990424 8.643802819 8.442384328 8.708333604 8.652330189 8.790649522 191162716 cytochrome Energy process Energy process Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 9.16949604 9.095427893 9.353640391 8.591737125 8.416056025 8.573470579 8.062956797 8.104226231 8.210082869 8.444404645 8.387923527 8.707389095 198284457 sigma_32 Stress Sigma factors Acidithiobacillus ferrooxidans ATCC 53993 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 9.458812113 9.440361194 9.160966693 8.522291173 8.836841953 8.955610215 8.375457986 8.813071997 8.629352224 8.801224388 8.744181345 214044173 mer Metal Resistance Mercury Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 9.104585226 9.190433954 9.309200045 8.79723458 8.606182602 8.603170604 8.453251079 8.591007589 8.348383721 8.549879481 8.643316121 8.948278151 187923091 fnr Stress Oxygen stress Burkholderia phytofirmans PsJN 8.697245373 8.650597209 8.103687323 7.927550352 8.152789165 8.361403271 8.002237009 8.550561236 8.23970793 8.473867383 8.491727703 225156504 pstA Stress Phosphate limitation Opitutaceae bacterium TAV2 8.514459859 8.488319559 8.297328883 8.068812183 8.491683572 8.847723325 9.10953056 8.382075682 9.026907223 8.414737662 8.574360222 8.559353347 87281376 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 10.35519404 10.34304367 10.17709263 9.572286584 9.490774668 9.510930364 9.839552084 9.385413632 10.05608473 9.587901024 9.81353587 9.693495761 146403611 ahpC Stress Oxygen stress Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 8.835222028 8.566810415 8.553470864 8.394390961 8.335595314 8.389393504 8.21908508 8.33419082 8.360921108 8.441846281 8.409401343 8.681454611 220935284 Arylest Organic Remediation Aromatics Other aromatics Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 9.318471585 9.447861973 9.491185735 8.948867037 8.72161686 8.582299659 8.579762971 8.759075906 8.543872414 8.8431318 8.853689226 9.198407518 154693537 katE Stress Oxygen stress Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 8.728804802 8.950357452 9.024396179 8.834499481 8.86182801 9.057294708 9.295348698 9.383679775 9.529784461 9.437260153 9.106867211 48527112 mcrA Carbon cycling Methane Methane production uncultured Methanomicrobiales archaeon superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales; 8.288617552 8.063634924 8.25910306 8.110938126 8.306970644 8.079581098 7.662786748 8.322230108 8.069584337 8.143177394 7.988715159 8.297376898 19309738 phenol_oxidase Carbon cycling Carbon degradation Lignin Gaeumannomyces graminis var. graminis superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Gaeumannomyces;species:Gaeumannomyces graminis; 7.989759381 8.105977797 8.146039618 7.960178608 8.424518174 8.106537242 8.231770127 8.165969409 8.084639145 182633120 iro virulence Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 8.620865451 8.487616897 8.662122523 8.642710101 8.498661821 8.416691992 8.655167178 8.65735484 9.129106653 8.988883795 9.001087864 8.825827756 146402660 nitA Organic Remediation Aromatics Other aromatics Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 8.60479267 8.80836285 8.374188847 8.436486181 8.379328882 7.969879557 8.658261917 8.487161214 8.534675177 8.489998616 21955938 bphA Organic Remediation Aromatics Polycyclic aromatics Pseudomonas sp. 4N1-2 8.38713919 8.47867591 8.558778984 8.457008119 8.428664559 8.424471745 8.161081587 8.390252347 8.219313864 8.514837991 8.643429888 8.020422987 68342648 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 9.415174106 9.507730712 9.659271586 8.922388447 9.254527288 9.557930533 9.684889766 9.141457168 9.758402618 9.118043228 8.93229943 9.146988517 9107071 linB Organic Remediation Pesticides related compound Xylella fastidiosa 9a5c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xylella;species:Xylella fastidiosa; 8.759751799 8.830911714 8.886615015 8.205395975 8.400649043 8.436414525 8.229222285 8.452160074 8.476886354 8.301760656 8.326007961 8.486650534 66391961 scaffold Bacteria phage STRUCTURAL Aeromonas phage 31 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 8.102295584 8.256884242 8.634725682 7.697155745 7.598631992 7.897613049 8.032196646 8.243278719 8.109242631 8.082060858 7.88627939 98976390 pstB Stress Phosphate limitation Sphingopyxis alaskensis RB2256 7.248198754 7.304521464 7.372926009 7.139403339 6.706603469 8.075640113 7.357727238 7.154686301 116694932 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 9.340773217 9.23365007 9.234974287 9.022800939 9.092321726 8.850523623 8.954684725 9.125926832 9.223901857 9.050396307 9.044764584 9.21861136 227549526 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium lipophiloflavum; 8.853844017 8.75908655 9.008137379 8.543528918 8.447829447 8.331054936 8.262498837 8.438474784 8.328437294 8.540013253 8.445002958 8.70166947 84384229 chnB Organic Remediation Other Hydrocarbons Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 8.332018496 8.391159216 8.263588632 8.567701137 8.459253847 8.180876297 8.543515068 8.338600875 8.511078505 8.40425639 8.430519767 7.956123356 94471303 narG Nitrogen Denitrification uncultured bacterium 9.228322588 9.272269325 9.264768866 8.057426802 8.074527875 8.560766447 7.750138627 8.565170904 10581893 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Halobacterium sp. NRC-1 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halobacterium;species:Halobacterium salinarum; 8.939720289 9.189775513 9.161941242 8.733121468 8.867956969 8.614922693 8.663139045 8.924053399 8.76399554 9.072382916 8.996821249 9.021270739 239815377 iro virulence Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 9.149756514 9.152518606 9.121306338 8.478799788 8.396490893 8.385936084 8.384866132 8.15021116 8.67732782 8.434990906 8.593413973 8.58460297 83816200 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Salinibacter ruber DSM 13855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 8.852032381 8.759714983 8.438543999 8.875950661 8.73864832 8.642535089 8.517271809 9.164073435 8.357081093 8.753178181 8.719290946 9.199896254 152969313 ZitB Metal Resistance Zinc Klebsiella pneumoniae subsp. pneumoniae MGH 78578 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 8.084223901 8.319276435 8.119925822 7.784110751 8.206338175 7.895655397 8.290011123 7.825650071 7.58077799 7.48976055 120607444 ArsC Metal Resistance Arsenic Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 8.313548692 8.082355689 8.362726414 8.214139307 8.267588409 7.695389699 8.544730658 7.985906912 8.49048449 8.354380363 8.012956153 145557271 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 9.659293098 9.550071106 9.403645632 9.266457052 9.187441237 8.975570485 9.121312319 9.219017536 9.404302464 9.364156953 9.27449314 9.293462405 109452501 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.853725588 8.649940666 8.528621963 8.723342702 8.690212921 8.667079367 8.317709681 8.644520534 8.636523075 8.593235884 8.462055579 8.684714999 73541946 sigma_24 Stress Sigma factors Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.884713516 8.737473268 8.708065532 8.685686667 8.739586301 8.764802997 8.852510181 8.985773982 8.796528135 9.288964736 9.312733963 9.014245816 28853329 vanA Carbon cycling Carbon degradation Others Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 10.31995755 9.744291373 9.887860666 9.112574677 9.522583873 9.847506881 9.553423728 9.689918207 9.766767818 10.03336696 9.776554086 148260907 chromium_resistance Bioleaching Metal Resistance Acidiphilium cryptum JF-5 9.098422902 9.058643671 9.001361388 8.494003398 8.612115411 8.598159509 9.011298033 8.559440734 9.339839391 8.297792124 8.633534904 8.337349682 148261931 pstB Stress Phosphate limitation Acidiphilium cryptum JF-5 8.836617 8.719439251 9.01778233 8.442630305 8.448788007 8.689447607 8.629621303 8.948631053 8.636574681 8.692128341 8.512434232 116227847 CadA Metal Resistance Cadmium Solibacter usitatus Ellin6076 8.388603827 8.133105811 8.511305205 7.600581615 7.487601565 7.791833487 7.774157806 7.434956162 7.736998404 7.509175136 7.625035782 7.705252785 12584219 endoglucanase Carbon cycling Carbon degradation Cellulose Volvariella volvacea superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pluteaceae;genus:Volvariella; 8.667134242 8.504496449 8.574581054 8.669754645 8.076161952 7.665330154 7.967713492 8.153795814 8.225472318 8.497149277 125971537 nirK Nitrogen Denitrification uncultured denitrifying bacterium superkingdom:Bacteria; 8.726943661 8.387846641 8.710842595 8.085229946 8.018772299 8.07981564 7.92646781 7.539571611 7.829823749 7.765457294 8.160005236 149924786 aclB Carbon cycling Carbon fixation Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 9.942342863 9.710450242 9.657136714 9.168054898 9.223856501 9.250245578 9.049624028 9.060838495 9.025821901 8.999178677 9.295087237 9.402160543 281300417 sigma_70 Stress Sigma factors Prevotella buccalis ATCC 35310 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccalis; 8.372145343 8.642410046 8.22341634 8.147714571 8.068759731 8.005987556 8.23592764 8.256770585 254822500 fnr Stress Oxygen stress Mycobacterium intracellulare ATCC 13950 8.987654962 9.156530213 8.890615119 8.999547836 8.967010232 8.84371094 8.814381439 8.997633864 8.838773798 8.876514144 8.979961315 9.127468981 218282140 pstB Stress Phosphate limitation Eubacterium biforme DSM 3989 8.50822552 8.123656606 8.233315937 7.322198024 6.970819074 7.341973887 7.243930329 7.137049068 227988535 ahpC Stress Oxygen stress Meiothermus silvanus DSM 9946 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 9.169043584 9.010874937 9.129237309 8.517670603 8.183123877 8.474220805 8.459228884 7.821463774 8.063035659 8.441954644 8.437043754 222437409 phn Organic Remediation Herbicides related compound Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 8.110546617 8.137214368 8.412496454 8.133045501 8.159194137 7.968462841 7.89399706 8.430717109 8.391613675 8.169552083 8.166677383 8.114423013 126179262 ahpC Stress Oxygen stress Methanoculleus marisnigri JR1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanoculleus;species:Methanoculleus marisnigri; 8.661142505 8.237340111 8.752557533 7.974515804 8.131074356 8.009750809 7.447090549 7.650149638 7.868036797 7.842685739 7.827378319 7.774390921 118592465 oxyR Stress Oxygen stress Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 10.07919274 10.01028372 10.00126074 9.871846872 9.873921957 9.726426669 9.773905361 9.945842653 10.0687804 10.06287968 10.03899937 10.00779782 76557974 pimF Organic Remediation Aromatics Aromatic carboxylic acid Natronomonas pharaonis DSM 2160 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natronomonas;species:Natronomonas pharaonis; 8.10668559 8.370221441 8.226432954 7.696266146 7.702447983 7.90009882 8.057214122 7.476265328 7.973304768 7.590241229 7.535539971 7.581403247 27657621 ChnE Organic Remediation Other Hydrocarbons Arthrobacter sp. BP2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8.485690824 8.679991038 8.731767802 8.681569082 8.703841625 8.519171642 8.911315971 8.860159141 8.499735473 9.039086824 8.901496175 8.6443229 126093885 tfdA Organic Remediation Aromatics Chlorinated aromatics Pichia stipitis CBS 6054 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Scheffersomyces;species:Scheffersomyces stipitis; 8.669293082 8.762468012 9.059490199 8.156567734 8.020844254 8.032768365 8.365113184 7.944258729 8.282060795 8.11464583 8.21683153 8.318033802 76884173 pstB Stress Phosphate limitation Nitrosococcus oceani ATCC 19707 7.195309758 7.331644355 7.457180512 7.162753407 6.784642976 7.644449194 7.10646798 7.375433435 7.207257702 120555993 narI Stress Oxygen limitation Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 8.15733808 8.449441673 8.18623652 7.991616399 8.048950522 8.264633099 8.203410835 8.250147569 8.459720282 8.676015133 8.624694821 8.624710537 220725571 BADH Organic Remediation Aromatics Other aromatics Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 8.660554357 8.506103238 8.724868079 8.601553328 8.133961526 8.239924587 8.111908546 8.342837244 8.479210576 227493867 glnA Stress Nitrogen limitation Mobiluncus curtisii ATCC 43063 8.500114559 8.323503738 8.558834376 7.924192805 8.020260607 7.944231598 7.970085096 8.266540867 8.11244154 8.241621363 8.386788375 8.358643284 77761333 xylanase Carbon cycling Carbon degradation Hemicellulose Xanthomonas campestris pv. campestris str. 8004 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 7.805531348 7.910660392 7.83745278 7.331701089 7.545838209 6.998137089 7.496135863 7.803762709 7.748426507 7.385517166 7.406080003 170101420 phenol_oxidase Carbon cycling Carbon degradation Lignin Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 8.922475463 8.552068619 8.587461187 8.518476705 8.294742448 8.114844793 8.31865623 8.341754849 8.519401839 8.420905371 8.271202855 8.211398472 170744717 pstB Stress Phosphate limitation Methylobacterium sp. 4-46 9.173513946 8.896505756 9.150638895 9.407171501 9.658462315 9.179300708 8.885532556 9.539914775 8.863984419 9.263197667 9.257385355 9.559405377 158303643 pstB Stress Phosphate limitation Acaryochloris marina MBIC11017 8.840141684 8.915657796 9.026735656 8.212488798 8.37354879 8.257620155 8.111641201 7.816169311 7.986165903 7.920521132 8.387818581 88709493 catB Organic Remediation Aromatics BTEX and related aromatics Flavobacteriales bacterium HTCC2170 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales; 8.556483163 8.448295281 7.598115622 8.042616584 154245574 sigma_24 Stress Sigma factors Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 9.973556267 9.775731877 9.677531101 10.4711936 10.53726158 10.26989869 10.30973878 10.13908375 10.1575564 10.1778308 10.1769767 9.799588648 167566717 silC Metal Resistance Silver Burkholderia oklahomensis EO147 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia oklahomensis; 8.231276061 8.426047778 8.209890644 8.343740905 8.432293858 8.617274215 8.435147284 8.650160411 8.457896933 8.530078513 8.700555516 8.660555851 110633036 dnaK Stress Heat shock Mesorhizobium sp. BNC1 9.190324589 9.225694057 9.267573494 8.758006042 8.970820684 8.918614622 9.169074849 8.944423807 9.248641732 9.067727434 9.249155609 8.966785551 55823195 srt virulence surface protein Streptococcus thermophilus CNRZ1066 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus thermophilus; 8.547316529 8.60260485 8.910668551 7.813361889 7.848747635 7.950430811 7.580140171 7.653511826 8.007314392 7.9221677 7.948786764 8.076534234 159894223 sigma_70 Stress Sigma factors Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 8.946738296 8.85069087 8.900070705 8.514240751 8.301765131 8.159298168 8.579204631 8.272109712 8.862554284 8.272865841 8.39997566 8.468389117 116743242 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.583046092 8.336353251 8.942465624 8.742252095 8.505618107 9.163439598 8.907652357 8.660255998 8.921252527 9.063222564 8.475303181 88705821 sigma_38 Stress Sigma factors Congregibacter litoralis KT71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 9.395193926 9.249062721 9.216215048 8.941882755 8.99074121 8.829646676 9.004577802 9.003205337 8.647155968 8.796513036 8.918110586 152979181 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Actinobacillus succinogenes 130Z superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus succinogenes; 9.415817204 9.332836311 9.102546241 8.580425703 8.633560169 8.818235602 8.941188075 8.792710905 9.422281161 8.380126989 8.581298871 8.432138289 111150085 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 8.770736869 8.271200647 8.29722608 8.569353226 8.424885908 8.14763407 8.434839433 8.350618242 8.349704998 8.1952753 8.310422816 8.055067083 218151645 tutFDG Organic Remediation Aromatics BTEX and related aromatics Desulfovibrio salexigens DSM 2638 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio salexigens; 8.124628329 7.924356097 7.441702945 7.351972919 7.615901097 7.496444102 7.528530537 7.592712844 7.400094277 114707623 TerC Metal Resistance Tellurium Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 9.359685456 9.257818759 9.236827796 9.008290579 9.089370739 9.102125973 8.827145933 8.885769977 8.828362222 8.860639425 9.344097262 9.051534059 218356377 catB Organic Remediation Aromatics BTEX and related aromatics Escherichia fergusonii ATCC 35469 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia fergusonii; 8.371716248 8.779873733 8.644280243 7.887947338 7.931732637 8.318389528 8.855166042 7.766263799 8.918133822 7.800860062 7.573720157 7.890248053 13474199 xylA Carbon cycling Carbon degradation Hemicellulose Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 8.689154165 8.669294968 8.517839348 8.380930077 8.633114071 8.633429127 8.38324848 8.802180688 8.604178986 8.593216017 8.729850896 8.564693811 219860642 ChrA Metal Resistance Chromium Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 9.466914509 9.146659883 9.167178876 9.073461619 8.994380738 8.673104519 8.966256781 9.259846757 9.007780115 9.154201416 9.09734503 9.136372715 227366651 fnr Stress Oxygen stress Chryseobacterium gleum ATCC 35910 9.304596438 9.221139247 9.108436971 8.60503481 8.761340331 8.955333558 8.931903134 8.888408459 9.175689383 8.783418924 9.052192619 8.821331617 154253688 gyrB other category gyrB Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 8.186553063 8.304996876 8.046069494 8.274492143 8.134992554 8.170902019 8.544187741 8.307829459 8.436452582 8.256179966 8.531677048 8.343460216 94482876 rubisco Carbon cycling Carbon fixation Telmatospirillum siberiense superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Telmatospirillum; 8.74464016 8.659128359 8.878428543 7.990407871 8.206369126 8.197435847 8.33420002 8.448801633 8.441748337 8.640967881 8.242536007 8.451678446 119391637 narG Nitrogen Denitrification Rhodococcus sp. D2-4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.757804679 8.770566508 8.518375051 8.30282792 8.287324072 8.553939052 8.131375885 8.257384967 8.53691576 8.526944554 8.417112123 8.384994714 192897572 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 8.329716451 8.414688971 8.222951437 8.43723152 8.203729269 7.902780048 8.153008534 8.103274717 8.270691182 7.8693641 7.493722169 7.957323346 212557067 pilin virulence pilin Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 7.713414428 7.767347991 8.286560998 8.239109887 7.411232559 8.39799094 7.731543427 7.992847655 8.489434915 256751485 fnr Stress Oxygen stress Thermoanaerobacter ethanolicus CCSD1 8.520584761 8.43878554 8.594609984 7.992697926 7.600840292 7.967222467 7.239929956 7.336632674 7.609951296 7.445300051 7.876366173 116624777 AceA Carbon cycling Carbon degradation others Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 9.040018427 8.554226071 8.657272273 8.417751125 8.421302787 8.250632352 8.37302516 8.440144965 8.437024368 8.309102249 8.164341381 8.372236156 120322798 gyrB other category gyrB Marinobacter aquaeolei VT8 6.721318462 6.848343923 7.138404816 7.318481839 227966475 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 8.708400257 8.901643416 9.046834553 8.743336575 8.972947653 8.491982921 8.681047812 8.521828192 84684212 Arylest Organic Remediation Aromatics Other aromatics Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.481305615 8.600443696 8.612602834 8.692610934 8.696162654 8.406361438 8.107688435 8.654586516 8.793059799 8.588851446 8.48999188 8.395696339 34331002 pimF Organic Remediation Aromatics Aromatic carboxylic acid Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 8.14267977 8.116732498 8.387660309 8.253965094 8.184279406 7.969623125 8.114101061 8.256498464 8.120405611 8.145785587 8.067618692 8.100415445 116749742 nitA Organic Remediation Aromatics Other aromatics Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 9.238725668 9.265942936 9.538644088 8.781571384 8.74861278 8.739810113 9.201124021 8.869010583 9.219804698 8.870630991 8.734191455 8.737073934 179349858 obgE Stress Radiation stress Natranaerobius thermophilus JW/NM-WN-LF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Natranaerobiales;family:Natranaerobiaceae;genus:Natranaerobius;species:Natranaerobius thermophilus; 8.807100931 8.616034755 8.840372497 8.292508146 8.11686627 8.206929832 8.118722942 8.291605167 8.317795559 8.316863557 8.313098219 8.333257794 197118229 phoB Stress Phosphate limitation Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 8.539857373 8.474898019 8.444576496 7.539181336 8.137407273 7.833451838 8.232464196 7.499922913 8.434776531 7.946212778 8.167113296 7.778769502 83647941 pilin virulence pilin Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 8.571656428 8.814057952 8.928125918 8.169384885 8.473476628 8.567789621 8.842340302 9.151266719 8.920456797 8.750384749 8.361569593 32308029 narG Nitrogen Denitrification uncultured bacterium 8.829310593 8.208139208 8.091028182 7.759166212 7.538252878 8.073283301 8.088240604 7.875987272 7.930213512 7.988324207 194309124 CopA Metal Resistance Copper Pelodictyon phaeoclathratiforme BU-1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 8.439695396 8.583294233 7.970257841 8.420278833 8.322522414 8.549453242 8.740270009 8.634908867 8.87684516 8.940289792 8.677308606 209532030 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 9.2347924 8.94256558 9.062772658 8.454714319 8.543512342 8.379893814 8.422919203 8.434185842 8.53147211 8.458230706 8.787593055 151302253 APS_AprB Sulphur adenylylsulfate reductase Desulfococcus sp. DSM 8541 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus; 8.866584801 8.486175258 8.699852727 9.005635165 9.00097663 8.916804488 8.50408451 9.203378494 8.389832016 8.858874964 8.685069851 9.199888303 167768761 atzA Organic Remediation Herbicides related compound Anaerotruncus colihominis DSM 17241 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Anaerotruncus;species:Anaerotruncus colihominis; 8.338628803 8.187041114 8.474832798 8.282283507 7.909865461 8.150713009 8.262651109 8.254465861 8.31975477 8.071382645 8.30466344 149144755 B_lactamase_A Antibiotic resistance Beta-lactamases Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 9.18426084 9.037962837 9.208719953 8.486148157 8.45922506 8.395674242 8.667282388 8.11459992 8.367401052 8.431991738 8.567264728 83755992 ZntA Metal Resistance Zinc Salinibacter ruber DSM 13855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 8.583023891 8.343974795 8.643320812 9.143266935 8.892340386 8.321139364 8.853308063 8.846280583 8.559072733 8.650693984 8.512681443 8.027072009 251827405 pstB Stress Phosphate limitation Gallionella ferruginea ES-2 7.993106375 8.073676243 7.948603427 7.447987124 7.304403269 7.529096752 7.33084485 7.053683301 7.559732109 6.963998659 7.351024362 7.498717898 152994545 proO Organic Remediation Aromatics Other aromatics Marinomonas sp. MWYL1 8.619020165 8.374680339 8.687913489 8.113572995 8.185160733 8.326741926 7.811833114 8.131467092 8.324394484 8.053568024 8.134849988 8.034576162 77381652 sigma_24 Stress Sigma factors Pseudomonas fluorescens Pf0-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.984161788 8.493526158 8.611432102 8.280469961 8.477231217 8.186909045 8.601815555 8.281942173 141924 SilA Metal Resistance Silver Ralstonia metallidurans 8.21780806 8.31696112 7.472229899 7.51880111 7.611229592 7.462122395 7.653817959 7.681682864 7.502477287 7.587552114 28629801 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.479716642 8.566521053 8.080291981 7.789774999 8.256831111 8.66856862 8.151619244 8.119046111 7.842685739 8.082153692 7.958356054 52082189 benD Organic Remediation Aromatics Aromatic carboxylic acid Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 8.324704023 8.278750213 8.537326822 8.175051535 8.116707694 8.241391878 7.986508848 7.894928113 8.390137764 7.860778351 8.281094523 7.993640168 67784303 ppx Phosphorus Phosphorus utilization Chlorobium limicola DSM 245 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium limicola; 9.170655039 8.96126429 9.107134468 8.441724744 8.448938381 8.114151383 7.900923379 8.214256109 8.438804029 8.141048432 8.033497928 8.2785172 207742324 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia solanacearum IPO1609 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 8.704244023 8.540022871 8.293714786 8.498894329 8.24714648 8.287359968 8.067330776 9.016523852 8.146865578 8.277131292 8.171156954 8.334325186 99083033 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.045704778 8.035922247 8.118004499 7.658170231 7.554633487 7.506610912 7.099540585 7.435800312 7.733656102 7.32833046 7.253085351 7.432457628 240172221 inv virulence invasion Mycobacterium kansasii ATCC 12478 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 9.200327223 9.363852515 9.182699485 8.755069483 8.911707194 9.514332632 9.0501211 9.414438976 8.769829798 8.933610653 8.876007418 83853070 tfdA Organic Remediation Aromatics Chlorinated aromatics Oceanicaulis alexandrii HTCC2633 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis;species:Oceanicaulis alexandrii; 8.409238622 8.116399646 8.422984338 8.349540972 8.225254718 7.84259035 8.009028116 8.419200211 8.380439191 8.126017496 7.978855794 8.286462681 255019605 sox Sulphur Sulphur oxidation Acidithiobacillus caldus ATCC 51756 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 8.667521541 8.546467519 8.432950046 8.045020261 8.05845209 7.86028668 8.050406775 8.309006414 8.227478246 8.18567694 8.098465879 255296150 sigma_24 Stress Sigma factors Rothia mucilaginosa ATCC 25296 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Rothia;species:Rothia mucilaginosa; 8.455297034 8.002597877 8.771715779 8.41956269 8.201937744 7.822100276 7.954976019 8.190203305 8.039787378 8.004944122 8.035171365 7.743379217 189424294 cytochrome Energy process Energy process Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 9.000334459 9.005063762 9.233588968 8.220999958 8.017814468 8.006896087 8.018873377 8.099845374 8.170647134 7.989101694 7.899398062 8.168730928 199594015 narG Nitrogen Denitrification uncultured bacterium 8.739330511 8.330564102 8.878784875 8.193053679 8.245125551 7.970880197 7.973088115 8.311982046 8.275371148 8.111040842 8.104476786 146337197 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.384365776 8.464902755 8.37327474 8.038692103 8.005742502 8.041405397 7.950125238 7.858256234 8.265053524 8.151696218 8.187770359 8.083031488 52080381 TehB Metal Resistance Tellurium Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 9.280834723 9.164013774 9.460888982 8.720052573 8.553914741 8.675165624 8.230346604 8.420413267 8.46685456 8.241665813 8.637440763 153003294 pstA Stress Phosphate limitation Anaeromyxobacter sp. Fw109-5 9.147131625 8.820100198 8.613562197 9.129552322 8.824513186 8.537205278 9.059128729 9.074012361 8.780820544 8.783351368 8.769876486 8.661110644 209518158 nmoA Organic Remediation Aromatics Nitoaromatics Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 9.102969103 9.041644779 9.285589405 8.660207368 8.601794991 8.583013948 8.657270135 9.015837082 8.90753851 8.8893592 8.875962006 8.995688575 219546421 nitA Organic Remediation Aromatics Other aromatics Candidatus Methanosphaerula palustris E1-9c superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;genus:Methanosphaerula;species:Methanosphaerula palustris; 8.831861513 8.845536954 9.230262783 8.875303856 8.397684065 7.877644651 8.743629564 8.008257548 7.893918185 8.317693855 115422025 ppk Phosphorus Phosphorus utilization Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 8.99490888 9.037023134 9.079194607 8.504288654 8.387268906 8.518467757 8.329748365 8.164031282 8.45559879 8.469942079 8.2116859 8.510324055 241775869 obgE Stress Radiation stress Allochromatium vinosum DSM 180 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 9.825296309 9.552461451 9.628851867 9.415686657 9.281326135 9.02383112 9.729686759 9.371407028 9.655987922 9.322128771 9.261817966 9.32357019 68263309 CopA Metal Resistance Copper Corynebacterium jeikeium K411 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 8.747340914 8.527041123 8.667148174 8.398571588 8.069884634 8.378987257 7.942247969 7.999920003 8.114516413 8.053060258 8.130823534 8.272009509 256008154 obgE Stress Radiation stress Acidimicrobium ferrooxidans DSM 10331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Acidimicrobiales;family:Acidimicrobiaceae;genus:Acidimicrobium;species:Acidimicrobium ferrooxidans; 8.540374381 9.228056645 8.915820443 8.257291206 8.219568507 9.019722508 9.043455068 8.536513693 9.086593816 8.657522208 8.681573755 9.002094921 120609491 ChrA Metal Resistance Chromium Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 8.672765963 9.035451014 9.105500527 8.785390399 8.67808448 8.234875401 8.555285953 9.219802667 8.986092394 9.235103441 8.97289025 8.98433021 254395790 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 7.630956052 7.720456534 8.120168859 7.652569401 7.792783936 8.478451191 7.957607148 7.782229264 7.460356736 115351481 endochitinase Carbon cycling Carbon degradation Chitin Burkholderia cepacia AMMD superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 7.222913369 7.025408074 6.542951579 7.498428789 7.074371043 6.822525964 7.373327244 52143553 atzA Organic Remediation Herbicides related compound Bacillus cereus E33L superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 8.165912115 8.100373727 8.184224537 8.094842772 8.160673215 8.014849443 7.93100282 8.180328794 8.290619897 8.304517473 8.324902756 8.213480536 1854553 nifH Nitrogen Nitrogen fixation Methanothermobacter thermautotrophicus superkingdom:Archaea;phylum:Euryarchaeota;class:Methanobacteria;order:Methanobacteriales;family:Methanobacteriaceae;genus:Methanothermobacter; 8.877211727 8.833382213 8.958826589 8.320037171 8.118701926 8.105739109 7.834029603 8.010145092 8.385557275 7.90679939 7.938059195 8.174373384 251755177 type_III_secretion virulence secretion Pectobacterium carotovorum subsp. carotovorum PC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 9.445052291 9.286576654 9.065467659 8.523703681 8.682103848 8.741169088 9.119158983 8.401166363 8.988672529 8.666816552 8.888643301 8.655974606 13472628 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 9.057225972 8.765809088 8.995406334 8.229764955 8.433316539 8.566764952 8.453664956 8.317388532 8.382352012 8.320149487 8.520867273 8.490774277 177843427 sigma_70 Stress Sigma factors Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 10.21980447 10.01252339 10.1724117 9.336226025 8.899897693 9.063937094 113723233 nmoA Organic Remediation Aromatics Nitoaromatics Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 9.345502157 9.3978726 9.448454553 9.470755258 9.458635511 9.3025598 9.620386856 9.338461613 9.32041989 9.505348087 9.748535649 9.491998116 237803614 MFS_antibiotic Antibiotic resistance transporter Pseudomonas syringae pv. oryzae str. 1_6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 8.33131513 8.301222195 8.573944129 8.032727691 8.37482661 8.211277105 8.695212772 8.349215422 146195669 bphC Organic Remediation Aromatics Polycyclic aromatics Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.547206216 7.690219624 7.638838013 7.551776934 7.958008623 7.798809392 7.78530592 7.814806329 157406625 chnB Organic Remediation Other Hydrocarbons Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 8.588949857 9.394123952 9.074773701 8.654206815 9.404372867 9.762212487 9.152907853 9.435851288 9.012817852 8.793131248 9.08921758 171692655 ChrA Metal Resistance Chromium Podospora anserina superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 8.58151471 8.521909832 8.63707663 8.652629049 8.607555054 8.276886588 8.470606333 8.479877132 8.473104764 8.431500918 8.261350847 211905613 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.723512934 8.796169227 8.894949903 8.276838867 8.019684919 8.006730413 7.611458757 8.276855164 7.658564359 7.695806181 7.952264089 198283644 glucoamylase Carbon cycling Carbon degradation Starch Acidithiobacillus ferrooxidans ATCC 53993 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 8.560233854 8.267087749 8.588552508 7.569929182 7.849881989 7.643791974 7.576121311 7.408996604 7.386194981 7.453198635 7.72567026 88184435 mer Metal Resistance Mercury Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 10.06557402 10.01806531 9.908541286 9.314732552 9.253765489 8.946986413 9.284913564 9.060950917 9.208786087 9.107712004 9.131707368 9.240109032 52784556 xylC Organic Remediation Aromatics BTEX and related aromatics Bacillus licheniformis ATCC 14580 9.013927193 8.986001014 9.109819872 8.160745909 8.217413886 8.542829151 8.340019361 8.395735187 8.329763792 8.350648358 8.281469232 8.531694493 145299612 linB Organic Remediation Pesticides related compound Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 8.957394964 9.145871069 9.000369655 9.118980556 9.002513909 8.797225821 8.77143396 8.992975159 8.61677146 8.916257613 8.868273746 8.552165365 951464 lip Carbon cycling Carbon degradation Lignin 'Arthromyces ramosus' 9.259238963 9.093257827 9.383699128 8.640153355 8.599513665 8.307377288 8.801681818 8.755011433 8.876895795 8.805298053 34498556 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 8.258334604 8.697949078 7.525487651 8.632437801 8.106141867 8.648847482 8.371691359 8.558126945 8.028141986 7.887715127 8.071078348 211586274 tfdB Organic Remediation Aromatics Chlorinated aromatics Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 9.161370012 9.246879596 9.405564623 8.730554655 8.636340777 8.666127298 8.381965273 8.598703453 8.622570588 8.708717518 8.77604846 148261609 Adaptations_to_atypical_conditionsIII Bioleaching other category Acidiphilium cryptum JF-5 8.100776056 8.171562853 8.150850752 7.799539307 7.832139062 7.950263569 7.417644891 7.562213381 8.01474444 7.31735714 7.846137654 7.432656582 157374211 sigma_70 Stress Sigma factors Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 8.419694498 8.028263913 8.146964007 7.953560998 8.080287287 7.737807506 7.709485232 7.980330059 8.227670427 8.124677615 7.946092006 8.079996804 4836660 rubisco Carbon cycling Carbon fixation Acidithiobacillus ferrooxidans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus; 8.114617252 8.080882683 7.655147487 7.323579281 7.321159679 7.022755716 7.340361449 7.568397825 6.962612407 7.404145932 7.259986389 167587598 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia ubonensis Bu superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ubonensis; 9.017097968 9.136316497 8.97300463 8.699342268 8.636307975 8.613882567 8.876282579 8.434351517 8.767106482 8.65376062 8.589500922 8.200445514 229611273 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.830032668 8.722756454 8.74925327 8.74282883 8.782397965 8.523305613 8.473005695 8.424969494 8.315731837 8.276906829 8.439655337 197104622 fnr Stress Oxygen stress Phenylobacterium zucineum HLK1 9.891815564 9.904674492 9.991937219 8.930885707 9.199540866 9.199601634 9.311823314 9.227358547 9.63739952 9.065939555 9.251260791 9.168296207 225792037 ara Carbon cycling Carbon degradation Hemicellulose Acidobacterium capsulatum ATCC 51196 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteria;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 9.429383194 9.031055255 9.027193989 9.016283091 8.940170787 8.70547285 8.608973379 8.850910871 8.809950734 8.931048391 8.980102797 9.071024358 183173988 dnaK Stress Heat shock Mycobacterium marinum M 9.144056987 8.894191187 8.988071983 8.679378794 8.394169087 8.327779621 8.218890382 8.400479341 8.283402473 8.560012372 8.431977199 8.739292017 113866836 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 9.854870926 9.563552534 9.928977798 9.117648583 8.991539101 8.893407144 8.645481965 8.920318809 8.838040487 8.976242336 9.03189652 9.357752544 226244684 oxyR Stress Oxygen stress Rhodococcus opacus B4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 8.16376289 8.407308638 8.013032828 8.002936059 8.479930864 8.111447455 8.091042917 8.304519443 5748626 CopA Metal Resistance Copper Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.986978978 8.789630369 9.012804411 8.441215764 8.385456759 8.546132277 8.536663229 8.236308956 8.416759141 8.327611304 8.128082035 8.387033276 183173473 linB Organic Remediation Pesticides related compound Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 8.617689336 8.420600336 8.504636246 8.855394994 8.824818535 8.53475816 8.510578088 8.444707794 8.330673816 8.30573851 8.422799581 8.091628814 219847331 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 9.105216915 9.154878231 9.474416265 8.93419534 8.914270909 8.813575102 8.857127283 9.105723584 9.001084913 9.282003144 9.297079643 9.334101004 99083197 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.324452383 8.090140914 8.388413922 7.734989625 7.758455382 7.666639526 7.451350866 7.408605075 7.908003599 7.500932614 7.335123731 7.768757189 76803740 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 11.08787872 10.83760448 10.69302369 10.93781365 10.97469185 10.93296314 10.65517736 10.80696198 10.96826513 11.01138493 11.09106691 10.55341854 194333297 ppx Phosphorus Phosphorus utilization Prosthecochloris aestuarii DSM 271 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Prosthecochloris;species:Prosthecochloris aestuarii; 8.15836723 8.219073636 8.294766376 7.682280083 7.839112419 7.401846853 6.921962933 7.652632801 7.275552475 7.677305326 7.960623638 194348710 iro virulence Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 9.005081447 8.992154851 8.974368615 9.206159696 9.31352059 9.432258829 8.987312867 9.417757018 9.117514946 9.3366616 9.549642732 8.91377841 91784632 ALN Organic Remediation Others Burkholderia xenovorans LB400 9.628073775 9.525108498 9.360312242 9.172827584 9.209173336 9.352384582 9.417055577 9.327215926 9.673094901 227377472 pstB Stress Phosphate limitation Kribbella flavida DSM 17836 9.137314566 8.994735758 9.143110343 8.640704087 8.579296478 8.56170258 8.496774554 8.249645843 8.486804781 8.361067365 8.496133247 8.69784776 240102894 pstB Stress Phosphate limitation Thermococcus gammatolerans EJ3 7.194859899 7.267106543 7.234887907 7.468931172 7.715388979 7.567269546 7.873980906 7.808499938 7.894165068 121720148 BpH Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 8.613083774 8.539639763 8.539168502 8.375875172 7.918920547 7.860784127 7.850055114 7.592462022 8.254045025 7.654479078 7.842495979 8.06189083 146400852 antioxidant Bioleaching Metal Resistance Acidiphilium cryptum JF-5 8.721365142 8.699729515 8.821602869 8.418442073 8.466079518 8.379077787 8.216143595 8.501538353 8.456262578 8.625893405 8.408994774 8.557787393 182437445 TerD Metal Resistance Tellurium Streptomyces griseus subsp. griseus NBRC 13350 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 9.930578206 9.774493127 9.571037403 10.4165286 10.32490038 10.40600585 10.05215608 10.54737327 9.985625836 10.30973711 10.4364963 9.792833253 256585268 hrcA Stress Heat shock Saccharomonospora viridis DSM 43017 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora viridis; 8.18060664 8.322198963 7.993628497 7.92460907 7.942945859 8.110775158 8.129504975 8.299143097 8.235642702 8.228213772 8.175253253 154154803 pstB Stress Phosphate limitation Parvibaculum lavamentivorans DS-1 8.251725833 8.276479293 8.07058216 8.149128031 7.754194152 7.988848918 7.971097503 8.057662154 7.760321704 8.008742857 7.673227937 163852441 atzB Organic Remediation Herbicides related compound Methylobacterium extorquens PA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 8.562239776 8.628921215 8.643618898 8.411734595 8.430384458 8.27156564 8.310089282 8.591545903 23015073 ArsC Metal Resistance Arsenic Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 8.636494731 8.877135317 8.876737118 8.063763855 8.339564348 8.735115109 9.141336361 8.13152404 8.850720726 8.486298043 8.123569775 8.699274154 27530054 gyrB other category gyrB Legionella cherrii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella; 8.432829401 8.600289438 7.913736727 8.049003296 7.838621193 7.80636978 8.23532763 7.766356875 8.212276008 8.1473646 8.166031594 161393366 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 8.506575064 8.320686966 9.043745364 7.740336193 8.245566077 7.92331769 8.127481843 8.637053935 8.034780367 8.365831887 8.122623205 187485260 amyA Carbon cycling Carbon degradation Starch Chloroflexus sp. Y-400-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus; 8.764202271 8.743546417 8.15122334 8.747645208 8.346073029 7.955951588 8.266548118 8.176832517 8.557126123 8.441635966 84786888 pcc Carbon cycling Carbon fixation Erythrobacter litoralis HTCC2594 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 8.776278941 8.941914075 8.834965837 8.754100929 8.817296929 8.653278234 8.659747761 9.029181969 8.886487437 8.874945803 8.605357568 8.828560033 118053946 nmoA Organic Remediation Aromatics Nitoaromatics Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.748256266 8.816375049 8.484324107 8.886058196 8.81175416 8.532752103 9.101782461 9.008723235 8.813963079 8.985623896 8.979320893 8.903597348 126718419 HBH Organic Remediation Aromatics BTEX and related aromatics Roseobacter sp. SK209-2-6 9.095646262 8.756108716 8.780896025 8.531240424 8.302423957 8.04073018 8.211257821 8.393999136 8.489786501 8.449433003 8.22692505 8.108362214 118038546 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 9.562399793 9.57266364 9.521465217 10.0922765 9.874739293 9.308470528 9.899567282 10.06578213 9.443795182 9.772642069 9.721870665 9.26924652 120595641 CopA Metal Resistance Copper Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 7.707156438 7.650770445 7.275524394 7.284781675 7.50711758 7.61830301 7.379237333 7.410633658 7.376805026 4160660 pcaG Organic Remediation Aromatics Other aromatics Streptomyces sp. 2065 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.342923776 8.232663219 8.484021037 8.472191606 8.539490034 7.6840942 8.723890925 8.110993222 8.21584145 8.36386494 7.625263982 116697898 pimF Organic Remediation Aromatics Aromatic carboxylic acid Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 9.298302083 9.329523686 9.521017883 8.627125622 8.467372528 8.559893903 8.382828154 8.410372986 8.7554566 8.669677705 8.866426905 254434533 phoB Stress Phosphate limitation Nitrosococcus oceani AFC27 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 9.4816587 9.350252078 9.431604644 9.020936475 9.077609756 8.91770408 8.95282416 9.097383168 8.950031223 9.31486823 9.467250324 9.345794 156868330 sigma_70 Stress Sigma factors Clostridium leptum DSM 753 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 7.506952325 7.761172523 7.899894954 7.43434464 7.901433818 7.933765122 7.938261697 7.713211916 240173195 pcc Carbon cycling Carbon fixation Mycobacterium kansasii ATCC 12478 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 10.3729426 10.38252231 10.30861561 10.3800494 10.11652032 10.25000093 10.5470493 10.30198188 10.54270278 10.6081647 10.77562395 10.48988419 261877035 narI Stress Oxygen limitation Selenomonas noxia ATCC 43541 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas noxia; 8.008708769 7.755319849 7.217912842 7.74981908 8.226713203 8.11157671 8.149778051 8.10683164 8.157254935 148838958 TehB Metal Resistance Tellurium Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 6.920550931 7.11367935 6.82948604 7.44619583 29604552 pcpB Organic Remediation Herbicides related compound Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 8.581944031 8.617731833 8.476716461 8.251300972 8.309488246 8.454485687 8.685362208 8.750618986 8.3972392 9.189771686 9.099040307 8.623774011 254270144 fnr Stress Oxygen stress Methylobacterium extorquens DM4 9.908769807 9.793988024 10.03051696 9.105936694 9.336587448 9.410469816 9.106649712 9.107908712 9.335621511 9.272062982 9.490858595 41324314 ureC Nitrogen Ammonification Corynebacterium glutamicum ATCC 13032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 7.69771311 7.291712751 7.640793298 7.370272411 7.089469396 7.737480343 7.337993824 7.360114582 7.802505755 225185053 pcc Carbon cycling Carbon fixation Bacillus subtilis subsp. subtilis str. 168 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 9.005900296 9.125144248 8.710441472 8.364531552 9.077164134 9.340110768 9.222666123 9.345070096 8.741393674 8.592879776 8.769052315 39983297 mer Metal Resistance Mercury Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 8.471882477 8.339263538 8.44675631 8.063529517 7.915345994 8.020843688 7.584051072 7.729212314 7.779118743 8.02354994 8.088056713 8.221761772 70731217 cbdA Organic Remediation Aromatics Chlorinated aromatics Pseudomonas fluorescens Pf-5 8.455549002 8.261283653 8.47141089 7.676737439 7.613343896 7.772350783 8.184430781 7.66323548 8.447565507 7.781619535 7.736529838 7.946093652 33238228 mhpC Organic Remediation Aromatics Aromatic carboxylic acid Prochlorococcus marinus subsp. marinus str. CCMP1375 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 8.62006791 8.158939684 8.345323574 8.31779441 8.14600862 8.262558252 8.848174908 8.588214549 8.64472957 8.187040018 8.574468552 119693417 narJ Stress Oxygen limitation Mycobacterium sp. KMS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.458173985 7.972034099 7.960345235 8.056711248 7.737413623 8.138480642 8.087248946 8.259216692 7.911207642 7.935319406 7.747868541 260650151 sigma_70 Stress Sigma factors Streptomyces scabiei 87.22 8.318077806 8.270362106 7.953239622 8.191446658 8.510186875 8.554833806 8.806900877 8.322704146 8.751098321 8.712819421 8.748415408 119525088 pstA Stress Phosphate limitation Thermofilum pendens Hrk 5 9.090474841 9.208799854 8.996173104 8.705034946 8.475584421 8.856217945 9.079114437 8.737556565 8.796012138 8.498105068 8.426350375 8.445939332 119641184 arhA Organic Remediation Aromatics Heterocyclic aromatics uncultured bacterium 8.285636168 8.180928353 8.476836734 7.594497402 7.676080946 7.533389367 7.374331992 7.180317899 7.822938717 7.550315864 7.453292138 7.783453388 33243229 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.077371088 8.022754863 6.767599373 7.246623111 17548712 czcC Metal Resistance "Cadmium,Cobalt,Zinc" Ralstonia solanacearum GMI1000 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 8.357145709 8.488243065 8.70099973 8.158899194 8.011790424 8.083974896 8.08848019 8.50501044 8.553770249 8.527745384 8.290219375 8.263533486 82791391 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 8.069446119 7.865539354 8.346003895 7.562115856 7.764335161 7.655307153 7.501174775 7.978033613 8.150125431 7.734450977 7.777088148 7.656647401 167349395 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.628841264 8.918488819 9.305179026 9.107961669 8.982825022 8.673870851 9.174984504 9.810030705 9.160064674 9.544681489 9.349168184 9.673713662 84664340 phtA Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.283823112 8.339957549 8.397071889 7.863713755 8.41263937 8.7988751 8.662717526 8.439356014 8.643291529 8.18794624 8.583342161 8.208346699 260574217 fnr Stress Oxygen stress Rhodobacter sp. SW2 7.537645894 7.527055712 7.783682802 7.893308023 7.49351185 7.95062673 7.26270258 7.405763362 7.701190185 92114749 sigma_38 Stress Sigma factors Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 8.348827447 8.601313674 8.041578261 8.429327781 8.706909161 8.513178271 8.707774013 8.743468505 8.729832814 8.744629713 8.666500155 56476463 pimF Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 8.279636576 8.566591788 7.58209708 7.665411178 8.264148121 8.292786274 7.752710964 8.118716752 7.630403124 7.888466536 8.221963774 119944685 arcB Stress Oxygen limitation Psychromonas ingrahamii 37 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas;species:Psychromonas ingrahamii; 7.263172818 7.438988372 7.266604926 7.320701858 7.063071778 7.137184893 7.584153083 242218178 endochitinase Carbon cycling Carbon degradation Chitin Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 8.859663053 8.555494904 8.498893363 8.487654249 8.424905383 7.978214759 8.243497343 8.352099451 8.945793557 8.101955341 8.233504325 8.283750697 148474840 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 9.711809243 9.624615421 9.562485991 9.101856071 9.023161449 8.952151681 8.837698829 8.814165693 8.608333414 8.93554838 8.972318226 9.210291239 61808016 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.857687812 9.055611657 9.204915972 8.438807156 8.615086759 8.636577959 8.7925638 8.636570021 8.701368484 8.905696407 9.030104719 8.97104167 269099686 fnr Stress Oxygen stress Thermanaerovibrio acidaminovorans DSM 6589 9.496938828 9.518658815 9.508609583 9.008750722 8.833252139 8.875148879 8.756344699 8.713834248 8.928685089 8.688982238 8.588805136 9.200793412 257052668 pstC Stress Phosphate limitation Halorhabdus utahensis DSM 12940 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus utahensis; 9.080055548 9.147771796 8.993071749 9.630852237 8.97152118 8.508624145 9.109660403 9.201038085 8.904747105 9.04972127 9.237546484 8.806264698 3157602 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 8.737165781 8.397237579 8.66858858 8.020589187 8.095223754 7.978234009 7.648095612 7.408590842 8.128249624 7.661069289 7.71153842 7.95260729 218533542 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 8.573464198 8.39467471 7.921758305 7.810205466 8.127856283 8.275960525 7.901872775 8.590533489 7.9644598 7.81754925 7.765364555 260613547 oxyR Stress Oxygen stress Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 8.348210613 8.333921498 8.109477362 7.650671518 7.700563967 7.927936316 8.175391335 7.463800019 8.387269792 7.747037741 7.848138195 7.930042914 257473729 sigma_24 Stress Sigma factors Eggerthella lenta DSM 2243 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Eggerthella;species:Eggerthella lenta; 8.649977142 8.662931788 8.441466916 7.908219331 7.978362173 8.006401438 8.48937364 8.174496961 8.139057532 8.450949407 8.207362713 209515123 glnA Stress Nitrogen limitation Burkholderia sp. H160 8.262081356 8.201236819 8.107205239 8.724526472 8.586893143 8.022121674 8.538682255 8.533787664 8.624506766 8.470239306 8.26912033 8.243053378 75704121 glucoamylase Carbon cycling Carbon degradation Starch Anabaena variabilis ATCC 29413 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena variabilis; 8.407469157 8.464176324 8.600691703 7.663726677 7.816363446 7.873872575 7.747427381 7.363542149 19909537 gyrB other category gyrB Caulobacter crescentus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 9.056659882 8.968841399 8.870220847 8.794695325 8.741846241 8.854219984 8.502602963 8.619984822 8.502975655 8.837015441 9.117507203 8.732681655 189196512 glx Carbon cycling Carbon degradation Lignin Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 9.58896343 9.528032634 9.628523399 9.040823601 9.12883769 9.288704452 9.039236529 9.118803939 9.217369212 9.177600985 9.231598406 9.247322589 57918624 mnp Carbon cycling Carbon degradation Lignin Phlebia radiata 8.450750892 8.169383687 7.04528602 6.818059715 7.022132303 6.705856519 7.52569465 119884655 nagG Organic Remediation Aromatics Aromatic carboxylic acid Salinispora arenicola CNS205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 7.858456152 7.929920263 8.046594627 8.06553354 8.24795331 8.256800783 8.159507235 8.26278347 7.960986841 151281191 SilA Metal Resistance Silver Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 9.151721728 9.02354597 9.121139493 8.492979232 8.425782777 8.325091449 8.281871852 8.609574367 8.444685401 8.582784319 8.558169014 8.788042782 95109235 iro virulence Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 8.232903554 8.419736721 7.945332862 8.189532193 8.058905946 8.316752294 8.141713725 8.211500667 8.266070506 8.357280368 8.206827734 169155080 ara Carbon cycling Carbon degradation Hemicellulose Clavibacter michiganensis subsp. sepedonicus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 8.657162323 8.366599098 8.753671718 8.368624047 8.157292026 7.996174747 7.993021848 8.507330437 8.554501002 8.676403361 8.38265243 8.413086961 77386433 ZntA Metal Resistance Zinc Rhodobacter sphaeroides 2.4.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 8.319695185 8.49051481 8.56476725 7.905426374 8.256822516 8.491679778 8.667462685 8.197531853 8.807599957 8.019179835 8.339925542 8.577905115 116248745 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.60626719 8.883765045 8.337914325 8.755095361 8.782970475 8.201104627 9.081189718 8.807142398 8.781548991 8.785862671 8.901153667 8.656569237 116619393 4HBH Organic Remediation Aromatics BTEX and related aromatics Solibacter usitatus Ellin6076 8.536629673 8.488493418 8.479518666 8.304698928 8.342689364 8.318316953 8.621943505 8.351080051 8.912137777 8.32045705 8.297131501 8.301217712 167656478 Al Metal Resistance Aluminum Eubacterium siraeum DSM 15702 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium siraeum; 8.291085355 8.450554532 8.052631718 7.651078821 7.44297884 8.086862258 7.576212356 7.385751815 7.595892802 7.625166859 261857106 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.690854643 8.648312261 8.399654568 8.269000798 8.295170944 8.35197467 8.234860016 8.475748883 8.487688604 8.516563385 8.581989469 8.599790687 118473639 linB Organic Remediation Pesticides related compound Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.661491151 8.449441673 8.674399974 8.163178201 8.109061691 7.959547621 7.842133004 7.918075004 8.24115887 7.92690884 7.904609947 7.633775984 159044153 pimF Organic Remediation Aromatics Aromatic carboxylic acid Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 9.040289878 9.220029079 8.923996038 8.467876496 8.359213472 8.212948234 8.198034912 8.335376925 8.404586275 8.35372571 8.405963857 8.473612598 119898145 xylJ Organic Remediation Aromatics BTEX and related aromatics Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8.110902287 8.15056157 7.755996729 7.925903188 7.95830472 7.873176629 7.786082115 8.201445509 7.802945443 8.039414512 7.778831985 28271963 tutFDG Organic Remediation Aromatics BTEX and related aromatics Lactobacillus plantarum WCFS1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus plantarum; 7.960358971 7.816860402 8.060474013 7.47555237 7.346567818 7.101996463 7.052339039 7.840110949 62003573 narG Nitrogen Denitrification uncultured bacterium 8.085221635 8.33351157 7.913941217 7.593116375 7.72989681 7.786750878 7.787574362 8.140299059 7.73698625 7.924415403 7.787200471 223542881 Tet Antibiotic resistance other Ricinus communis superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Streptophyta;order:Malpighiales;family:Euphorbiaceae;genus:Ricinus; 9.231551129 9.283670613 9.227914903 9.044207461 9.099653429 9.121815205 9.189647282 9.24888021 9.141993452 9.399791603 9.530017639 9.196320448 74053812 todC Organic Remediation Aromatics BTEX and related aromatics uncultured bacterium 9.135946152 9.320591148 9.127477824 8.211475745 8.452485378 8.71056507 9.255150577 8.558518373 9.088938726 8.543758447 8.215038988 8.687006978 238723714 pstB Stress Phosphate limitation Yersinia frederiksenii ATCC 33641 9.431412805 8.82876172 9.478074273 8.466065718 8.580166384 8.756117629 8.636733071 8.589903857 8.571674748 8.485930559 8.724816321 8.68133029 118173653 mhpC Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.420851502 8.311749 8.574590846 8.527130764 8.388276088 8.214567965 8.344756181 8.674717291 8.366872316 8.510728492 8.472255669 9.052328392 154150413 dsrB Sulphur sulfite reductase Candidatus Methanoregula boonei 6A8 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;genus:Candidatus Methanoregula;species:Candidatus Methanoregula boonei; 8.986687744 9.042616095 9.136226765 8.544701241 8.406562262 8.181526467 8.083295258 8.196511707 8.164329775 7.845702223 8.553822902 224800758 sigma_24 Stress Sigma factors Opitutaceae bacterium TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 8.785818235 9.025299521 8.969568127 8.928748513 9.224860951 9.524130406 8.783274268 9.434419521 8.705676803 8.950576948 9.068465273 182413370 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 6.937860355 7.290618826 7.739156621 6.646360407 7.986373429 7.065221786 7.330148341 7.639605798 86573399 pcc Carbon cycling Carbon fixation Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.289401196 8.352909274 8.534632962 8.414156175 8.534906306 8.602162882 8.358866729 8.658852901 8.567159313 8.316660364 26106086 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas resinovorans 8.124055272 8.459456788 8.218390926 8.155678113 8.28631586 8.342164679 8.355298162 8.217278912 8.32272015 8.52114881 8.421775884 89349691 mer Metal Resistance Mercury Xanthobacter autotrophicus Py2 8.440258319 8.4476035 8.043795241 8.28886627 8.447471102 8.02609645 8.250627978 8.44801495 8.392131489 8.7788738 8.343721025 51246927 narI Stress Oxygen limitation Desulfotalea psychrophila LSv54 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfotalea;species:Desulfotalea psychrophila; 8.31467081 8.066841315 8.27570832 7.745278119 7.432658218 7.594608433 7.419319322 7.096107496 7.934814724 7.558014585 7.335378418 7.592083935 120437263 CopA Metal Resistance Copper Gramella forsetii KT0803 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Gramella;species:Gramella forsetii; 8.807915973 8.714786603 8.620207528 8.33257162 8.48556942 8.464451144 8.786929376 8.637756486 9.35321191 8.533510227 8.749478444 8.557286402 151562419 CadA Metal Resistance Cadmium Ochrobactrum anthropi ATCC 49188 9.532644604 9.070785467 9.164462022 8.695223215 8.684283907 8.960726861 9.196928112 8.671779653 9.364784746 8.844905344 8.875635518 9.17737821 190997345 TerC Metal Resistance Tellurium Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.902369037 9.019510488 8.736701253 8.450257001 8.286810731 8.332680818 8.043853057 7.969255349 8.534555229 8.107158588 7.775888634 8.454877979 242122187 Tet Antibiotic resistance other Desulfovibrio salexigens DSM 2638 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio salexigens; 8.396420833 8.759858115 8.584334314 8.228238577 8.086803199 8.105426694 7.94673131 8.490310175 8.236130392 8.142203611 8.161853882 8.021395659 120609913 dnaK Stress Heat shock Acidovorax avenae subsp. citrulli AAC00-1 8.880044542 9.10376827 8.936942248 8.470720547 8.333845633 8.38780918 8.791936873 8.498943614 8.778915851 8.47960812 8.723264685 8.721272691 77378415 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.014114555 8.754617824 8.90293547 8.394074794 8.39744232 8.254776813 8.201272844 8.151419206 8.172595744 8.240311569 8.155778028 8.497280156 262404309 endochitinase Carbon cycling Carbon degradation Chitin Vibrio sp. RC586 8.358705798 8.25093667 8.44508201 7.882301305 7.766755289 7.964214888 7.654124725 7.554560978 7.937699097 7.705980425 7.882789877 7.872774684 74035820 cmuA Organic Remediation Chlorinated solvents uncultured marine bacterium superkingdom:Bacteria; 9.080356807 8.394972538 8.367187964 8.151100416 8.315514701 8.335216408 8.543234434 8.236437161 8.596694207 8.30283299 8.686874363 8.629896924 36784508 mdlB Organic Remediation Aromatics Aromatic carboxylic acid Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 8.135118842 8.262835846 8.328305051 7.912071967 7.740818604 7.775105678 7.544197887 7.504144609 7.885378947 7.432630437 7.388342302 7.812392465 259500650 hly virulence hemolysin Lactobacillus iners DSM 13335 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus iners; 7.184115619 6.93833948 254254044 endochitinase Carbon cycling Carbon degradation Chitin Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 9.470810403 9.404147287 9.518476675 9.099254232 9.072818509 8.880349461 9.074860964 9.277108548 8.843155896 9.027206169 9.154350732 9.109803545 118693048 nitA Organic Remediation Aromatics Other aromatics Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 9.676614789 9.659668442 9.895446534 9.111396567 9.078646733 9.063379976 8.902828312 9.246406174 9.0468407 9.290663415 9.376187886 9.596948961 219864433 iro virulence Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.443578306 8.540716063 8.511993714 8.088621113 7.767100622 7.881015746 7.524337215 7.285981251 8.294954041 7.59454303 7.649799668 7.857084664 88600601 glnA Stress Nitrogen limitation Neorickettsia sennetsu str. Miyayama 8.294829978 8.153063909 8.44796825 7.760969488 7.781706174 7.596758776 7.432009902 7.362044971 7.848826456 14389169 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.285964583 8.769679819 8.820379172 7.992272916 8.128378024 8.595088193 8.762071589 8.248787278 8.742576669 8.169862388 8.105999419 8.093457992 68164658 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.55852318 8.485324621 8.830567528 8.426825968 8.168567755 7.997380303 8.00417073 8.414495982 8.313852063 8.503041134 8.272485536 8.529492467 28850589 MATE_antibiotic Antibiotic resistance transporter Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 8.600918996 8.404886932 8.464147721 8.477503849 8.517835999 8.399838535 8.038863664 8.573590641 8.406841741 8.514258602 8.220833585 8.507690449 154157477 bclA Organic Remediation Aromatics Aromatic carboxylic acid Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 8.936366531 8.346024366 8.389674404 8.091926553 8.27258379 8.250178764 8.383616302 8.421976303 8.538706695 254473595 sox Sulphur Sulphur oxidation Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 9.263399435 8.744899221 8.687781347 8.211757504 8.106290698 8.071636113 8.274082877 7.991480003 8.480094261 8.473931184 8.521383733 8.438755167 33862535 pilin virulence pilin Prochlorococcus marinus str. MIT 9313 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 9.332041486 9.293930881 9.47303115 8.638390863 8.785907989 8.555400241 8.234603684 8.273663068 8.398250399 8.325238011 8.420846097 8.72837828 160931252 ara Carbon cycling Carbon degradation Hemicellulose Clostridium leptum DSM 753 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 8.510461659 8.957866054 7.657563113 7.685456665 7.673051528 7.487274359 7.491794697 8.07875359 7.794297765 7.806896197 8.001807814 27352760 nhh Organic Remediation Aromatics Nitoaromatics Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 9.308680116 9.140842681 9.290044081 8.735795173 8.873792735 9.192298266 9.51895835 8.864863676 9.476340394 9.17412759 9.256764175 9.284815775 83650623 sigma_70 Stress Sigma factors Burkholderia thailandensis E264 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 8.847707283 9.068720796 9.19054709 8.866717598 9.074219589 8.794039024 9.047506047 9.293591536 9.059634366 9.052783267 8.877696822 8.808186663 238023716 type_III_secretion virulence secretion Burkholderia glumae BGR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia glumae; 8.617514372 8.428812096 8.40560281 8.725991013 8.832922633 8.558090531 8.536347885 8.82918753 8.640691061 8.737642816 8.656663711 8.82132333 46111339 mnp Carbon cycling Carbon degradation Lignin Gibberella zeae PH-1 8.911161138 9.321800673 9.104221708 8.395256607 8.670290913 8.859457388 9.422999198 8.543734919 9.161833954 8.640024187 8.795428603 8.703472551 115258647 CadA Metal Resistance Cadmium Rhizobium leguminosarum bv. viciae 3841 8.96613164 8.594054107 8.708511879 8.248522104 8.323282908 8.120038431 8.018655591 8.484813463 8.068766061 8.497789272 8.337913577 8.370698674 145229305 endochitinase Carbon cycling Carbon degradation Chitin Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8.803353858 8.731819691 8.837040952 8.581221968 8.572017945 8.626351661 8.369108939 8.416539523 8.379674145 8.121390869 8.52332085 8.399939623 86608960 ppx Phosphorus Phosphorus utilization Synechococcus sp. JA-2-3B'a(2-13) superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.105649476 8.126466801 8.131118604 7.523143774 6.882700318 8.119587013 8.059897003 7.591981841 8.157515699 7.290468237 7.267441579 189496665 obgE Stress Radiation stress Chlorobium phaeobacteroides BS1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 8.313326066 8.292209306 7.832097254 7.713507249 7.608811635 7.881983091 7.513983649 7.945584175 7.526121657 7.28103098 7.422926148 212633497 nrfA Nitrogen Dissimilatory N reduction Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 8.1722864 8.426277226 8.42822185 8.043570656 8.074347125 7.889174464 8.46929886 8.040154356 8.305271996 7.920522456 7.938374842 8.006890461 163849849 hrcA Stress Heat shock Methylobacterium extorquens PA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 8.134401285 8.212076053 8.142798266 8.272337725 8.069400629 7.926779329 7.816608301 7.896135975 8.347620799 8.286619214 8.113344936 256686186 sigma_70 Stress Sigma factors Jonesia denitrificans DSM 20603 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 8.105029691 8.226521178 7.764904839 8.05145575 7.871245129 7.773394302 7.917330035 8.053071615 7.843606841 7.800567022 7.842443154 119391421 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.144755889 8.600698553 8.747072778 8.721680346 8.721381887 8.531327753 8.630758239 9.003991085 8.911634096 8.806464678 8.667900414 8.857762984 71907059 ureC Nitrogen Ammonification Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 8.494134016 8.330981626 8.181567169 8.73156092 8.532088075 8.634200472 8.413184163 8.558835211 8.316223646 118759038 tfdA Organic Remediation Aromatics Chlorinated aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.750490944 8.691306472 8.933629576 8.268776076 8.425151437 8.324124427 8.206557512 8.397077091 8.463599122 8.456334646 8.622713136 21672266 silC Metal Resistance Silver Aeromonas hydrophila superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas; 8.933220573 8.570840065 8.889177385 8.085930058 8.028110499 8.048715946 7.866759339 7.922617954 7.957966192 7.916535441 7.799919814 8.243419845 157713537 qorL Organic Remediation Aromatics Polycyclic aromatics Pseudomonas sp. QG6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.391132721 8.042962372 8.448113729 8.150694136 7.826682195 8.315049778 8.293698215 8.276663126 8.005008109 7.769948717 255280719 ahpF Stress Oxygen stress Bryantella formatexigens DSM 14469 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;species:Bryantella formatexigens; 9.503986602 9.541467974 9.541710756 8.936240204 9.005950027 9.122095494 9.077278855 9.023378854 9.246335786 9.035675423 9.281685702 9.29471996 192799846 exochitinase Carbon cycling Carbon degradation Chitin Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 9.386569199 9.491176386 9.418383011 8.529899715 8.518735063 8.710783995 226833058 amyA Carbon cycling Carbon degradation Starch Actinomyces urogenitalis DSM 15434 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces urogenitalis; 8.837580301 8.818361849 8.579276779 8.374660948 8.497143706 8.152992934 8.43181699 8.616429591 8.183554811 8.640884687 8.190029088 160428475 pstB Stress Phosphate limitation Clostridium phytofermentans ISDg 8.71571003 8.621494825 8.931424114 8.29236174 8.175547751 8.198345364 7.969323174 8.09815266 8.201562098 8.156390173 8.068260366 8.324108473 72122962 nagG Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 8.265956236 8.20672641 7.637136513 7.461889607 7.751742995 7.894739468 7.757920421 8.005699496 8.088968877 7.755342595 114705968 oxyR Stress Oxygen stress Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 8.722870378 9.047212023 9.076703776 8.582127959 8.191173381 8.855336927 114320812 narI Stress Oxygen limitation Alkalilimnicola ehrlichii MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 8.734882052 8.494123655 8.511259587 8.599371934 8.271578714 8.132184553 8.476287808 8.369927038 8.466565629 8.408083987 8.53922198 8.165732859 162449708 nrfA Nitrogen Dissimilatory N reduction Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 9.014762837 9.027005369 9.077151543 8.769049093 8.423233944 8.357370497 8.421830999 8.577339231 8.804554655 8.666761157 8.4836699 8.515581086 15596434 MFS_antibiotic Antibiotic resistance transporter Pseudomonas aeruginosa PAO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.516516196 8.984740293 8.687210824 8.243487505 8.708251196 8.927551625 9.22237186 8.491039244 9.219167173 8.570963116 8.918315772 8.52260706 157371599 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 8.882962481 8.713765751 8.89609139 8.410157285 8.454129207 8.095558605 8.277563877 8.834164281 8.538754731 8.513769472 8.733980662 66572474 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Xanthomonas campestris pv. campestris str. 8004 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 8.334609109 8.381683693 8.051717757 8.083211958 7.913174653 7.912380977 8.190820727 8.293162417 8.28784031 7.983059521 8.005077788 111019378 benD Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 9.062585481 9.261625956 9.361490238 8.706805658 8.521896843 8.831442225 8.963972932 8.830472971 9.361476127 9.080986843 9.086071195 9.219746178 85108032 exoglucanase Carbon cycling Carbon degradation Cellulose Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 8.773203111 8.771620056 8.65174243 8.483141096 8.345753418 8.185152053 8.507982065 8.480068738 8.408147322 8.374467477 8.331829172 8.271685925 118706669 tftH Organic Remediation Aromatics Chlorinated aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.438619811 8.378785824 7.929186525 7.724291107 7.760434459 7.877003875 8.178761411 8.134253436 8.071168302 7.928719536 7.886564118 119670827 Arylest Organic Remediation Aromatics Other aromatics Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8.655561659 8.396071393 8.445815158 8.184252286 8.155100477 8.487658067 8.603054757 8.787946804 8.721106645 8.570321104 8.627553419 253999905 katE Stress Oxygen stress Methylovorus sp. SIP3-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylovorus; 8.383418541 8.606820521 8.534533605 7.794823617 8.364236155 8.44472519 8.854307749 8.588682494 8.531420506 8.362089145 8.435255316 8.531728541 154304204 ara_fungi Carbon cycling Carbon degradation Hemicellulose Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 8.522754204 8.560470113 8.559316945 8.397122062 8.260383541 8.570100624 7.814994795 8.093756142 8.222692466 8.382310932 8.564040581 8.195861275 197327805 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 9.074169544 9.237448291 8.692119192 9.119513709 9.336813215 9.075050183 9.154347631 9.566893835 9.18904936 9.482589057 9.376370735 9.419368007 71839530 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 9.934416925 9.759120921 9.818453266 9.021190716 8.973441241 9.023595953 9.564071042 9.018289056 9.477032234 9.265491397 9.419143597 9.423200659 150390799 grpE Stress Heat shock Alkaliphilus metalliredigens QYMF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus metalliredigens; 8.667254324 8.01335732 8.46065129 8.620257718 8.041755128 7.761507956 8.157754302 8.404588477 8.056482094 154243973 phn Organic Remediation Herbicides related compound Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.505896566 8.586634272 8.335463761 8.402108849 8.560999422 8.393468058 8.495682674 8.88495931 8.935005183 8.832971434 8.609115809 8.599489322 157698482 fnr Stress Oxygen stress Arcobacter butzleri RM4018 8.060598135 7.958151065 7.145522661 7.251417242 6.960464063 98661174 bco Organic Remediation Aromatics Aromatic carboxylic acid Pelotomaculum thermopropionicum SI superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Pelotomaculum;species:Pelotomaculum thermopropionicum; 8.891116983 8.563100119 9.01104895 8.803349633 8.242644349 7.855941792 8.106997274 7.890821985 8.083141601 8.258489401 8.136839499 151562937 pcaG Organic Remediation Aromatics Other aromatics Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 9.368904695 9.183802141 9.433596153 8.459741129 8.703454688 8.839681348 9.465064439 8.949687581 9.472280213 8.943324762 9.045288774 9.002120744 94554863 cda Carbon cycling Carbon degradation Starch Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 8.741648288 8.632145658 8.851943324 8.077571735 7.876509082 7.950177339 7.351252968 7.395331151 7.764341189 7.636406227 7.53431281 7.921745527 110636425 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 8.749389862 8.931503069 8.652041637 8.282650643 8.275589977 8.155149316 8.03791617 8.436528093 8.14983386 8.229005238 8.181495588 8.593760164 31747634 ferredoxin_I Bioleaching Electron transport Leptospirillum ferrooxidans 8.588207353 8.996753857 8.901313113 8.533505174 8.262306065 8.30953016 8.154063447 7.976848763 8.423759753 8.053371006 7.934163981 8.337681856 157804871 APS_AprB Sulphur adenylylsulfate reductase Thiobacillus plumbophilus superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 8.953319487 8.892210315 8.559024268 8.481351888 8.792779037 8.834897069 8.739509877 9.009543616 8.827157641 9.157002786 8.844934407 8.67131154 209502273 proV Stress Osmotic stress Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.590213082 8.029166898 8.525528406 8.370367535 8.1562009 8.353348438 8.289294435 8.536687859 8.0403352 8.058345311 8.22573956 50309231 cellobiase Carbon cycling Carbon degradation Cellulose Kluyveromyces lactis superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Kluyveromyces;species:Kluyveromyces lactis; 8.045185961 8.168761894 7.957161033 7.792565516 8.038242997 7.940950373 7.78407388 8.044395071 8.066945219 7.986050429 7.965098364 7.796981985 118720149 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 7.435191201 7.706938019 7.879924498 7.934046058 6.909566694 8.218625972 7.273323044 7.507992985 7.679682651 170738512 sox Sulphur Sulphur oxidation Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 10.52511225 9.888170284 10.43820566 10.29670297 10.15921525 10.0663702 10.172156 9.851197871 10.53734268 10.35937734 10.48388365 10.05534215 210076901 alkB Organic Remediation Other Hydrocarbons Mycobacterium austroafricanum superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.70262521 8.779738626 8.811906136 8.411983564 8.217741595 8.223352562 8.249719953 7.943752078 8.543636435 8.084784297 8.500745188 8.125105057 17230337 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Nostoc sp. PCC 7120 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc; 9.143200303 8.90550463 9.147578067 8.488652574 8.321361571 8.208892223 8.27760748 8.206712845 8.208003349 8.37818227 8.636433288 261822952 SMR_antibiotics Antibiotic resistance transporter Pectobacterium wasabiae WPP163 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium wasabiae; 8.419006665 7.825547065 8.086329851 8.33146212 8.069961627 7.973536672 8.297523297 8.009429496 8.200845351 8.053321736 8.056248131 7.880851257 109672093 ZntA Metal Resistance Zinc Campylobacter concisus 13826 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter concisus; 9.728035581 9.525362474 9.479839997 9.415588089 9.40904871 9.230674498 9.443398892 9.333864417 9.237084579 9.75416323 9.909225528 9.438367305 70730276 nitA Organic Remediation Aromatics Other aromatics Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.794400115 8.905518379 8.665947457 7.378935493 8.353098613 8.885513808 8.121114356 8.320213337 8.171977556 7.995082096 221636340 catechol_B Organic Remediation Aromatics Other aromatics Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 8.5695157 9.077521333 9.068495342 8.804170459 8.897466872 8.533613101 8.656462799 9.031481851 8.817480682 8.914177035 8.752166751 8.751890829 146308856 pcc Carbon cycling Carbon fixation Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 9.851971844 10.2230988 10.13829313 10.09390043 10.26916947 10.26916789 10.17524138 10.49871636 10.13496547 10.44714892 10.40950734 10.08226202 33320441 dsrA Sulphur sulfite reductase Archaeoglobus veneficus superkingdom:Archaea;phylum:Euryarchaeota;class:Archaeoglobi;order:Archaeoglobales;family:Archaeoglobaceae;genus:Archaeoglobus; 8.706167449 8.339513746 8.834389321 7.651665737 7.354396396 7.640312555 6.909924758 7.508978814 7.296875092 7.431813249 7.667627436 196194885 iro virulence Alcanivorax sp. DG881 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 8.458810313 8.363893434 8.321636548 8.116533451 7.773942502 8.028562321 7.711155462 7.546538693 8.263666457 7.539779102 7.622442027 7.944855474 149924581 sigma_24 Stress Sigma factors Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 8.483676177 8.299451318 8.498953769 8.251769676 7.912112415 8.482001721 8.383032015 8.531133842 8.421184758 8.26102838 8.182281539 148554816 exaA Organic Remediation Chlorinated solvents Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.218744893 8.222200314 8.014920029 8.016029561 7.740897499 7.680770986 7.367801394 7.621925197 8.286388894 7.444040694 7.536430428 7.72935088 229593106 hly virulence hemolysin Pseudomonas fluorescens SBW25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 9.599388781 9.566639811 9.684304597 8.680497651 8.921405497 9.030409405 9.120947988 8.903134353 9.013074314 8.896809118 8.837015826 9.132838234 73537386 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 9.15835556 8.801206957 8.70633961 9.004962268 8.885224407 8.752893956 8.831630812 9.136505209 9.011845322 8.96354272 8.952472284 8.712007706 172040957 glnA Stress Nitrogen limitation Corynebacterium urealyticum DSM 7109 8.862948359 8.64562402 8.531618733 8.085469347 8.393614759 8.375648785 8.2398967 8.4461788 8.337341281 8.414051048 8.588502649 8.333241989 238711993 phoA Stress Phosphate limitation Yersinia rohdei ATCC 43380 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia rohdei; 8.776656658 8.813269331 8.926505601 8.432907475 8.301616906 8.101301571 8.037339949 8.069415497 8.118605603 8.189518209 8.114670103 8.370552469 53756700 sigma_70 Stress Sigma factors Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 8.586072367 8.552694816 8.309018286 8.276062569 8.255390122 8.176464099 7.955254854 8.31162006 8.357218253 8.274671393 8.256920189 8.257553446 170691004 CopA Metal Resistance Copper Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 9.993030934 9.706806942 9.517192273 9.62712557 9.665994934 9.479249157 9.386806345 9.526959239 9.491048267 9.687517073 9.779681981 9.768977042 220707158 ureC Nitrogen Ammonification Geobacillus sp. Y412MC61 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.372838866 8.198266892 7.864505161 7.226322305 7.448181707 7.993512886 7.191627889 7.543697679 7.418896486 7.372957823 13517067 gyrB other category gyrB marine CFB-group bacterium MBIC05558 superkingdom:Bacteria;phylum:Bacteroidetes; 9.489605676 9.596370407 9.858840799 9.780138688 9.617152986 9.624460428 9.995380933 9.936363785 9.406971265 10.16937781 10.02810006 10.12938608 167668565 glnA Stress Nitrogen limitation Anaerotruncus colihominis DSM 17241 8.757357674 8.756954353 8.892067809 8.05384812 8.559222385 8.833661447 9.418816646 8.006688297 9.298506841 8.420158625 8.248879843 8.333792244 261414101 katE Stress Oxygen stress Aggregatibacter actinomycetemcomitans D11S-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Aggregatibacter;species:Aggregatibacter actinomycetemcomitans; 9.907756136 9.664972098 9.631121037 9.133631601 9.432781674 9.737861666 9.5295909 9.538715196 9.241091184 9.774402511 10.18598797 9.816306252 29652652 narG Nitrogen Denitrification uncultured bacterium 8.302306711 8.288827515 8.50816359 8.24190507 8.068049517 7.967766897 7.760201587 8.126053626 8.156976647 8.081019002 7.982938033 7.842028179 227069681 nirA Nitrogen Assimilatory N reduction uncultured archaeon 8.438905866 8.32434803 8.380365687 7.98009059 7.701005011 7.928108372 8.256724661 7.931549677 8.305549281 8.044978986 7.971831829 8.014394681 260170750 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Bacteroides sp. D2 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 8.035851408 8.188290339 7.791390899 7.576991591 7.443680054 7.12782499 7.558979386 7.694070065 7.6376531 7.261659286 7.441671536 240168574 pcc Carbon cycling Carbon fixation Mycobacterium kansasii ATCC 12478 8.772506089 8.863938416 8.820409624 8.082932244 8.102438622 8.153564421 8.095908947 8.37345349 8.095134141 8.358146661 7.94108055 8.326400591 167852094 toxin virulence toxin Haemophilus parasuis 29755 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus parasuis; 7.103102282 7.354694196 7.214765272 7.364922205 7.632483182 7.060436739 7.645407154 258594424 phoB Stress Phosphate limitation Desulfurivibrio alkaliphilus AHT2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfurivibrio;species:Desulfurivibrio alkaliphilus; 8.845952672 8.898764241 8.901318734 8.351608947 8.276197171 8.361845647 8.124006214 8.160372244 8.396583537 8.130247414 8.211229711 8.489183498 227880605 glnA Stress Nitrogen limitation Halogeometricum borinquense DSM 11551 8.556536319 8.554115363 8.176826661 8.015577375 8.008405826 7.807130573 7.730658958 8.07400899 7.736788657 7.834375639 8.191058538 194016843 hly virulence hemolysin Bacillus pumilus ATCC 7061 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pumilus; 8.390639984 8.296540555 8.29430255 7.828017887 8.116851828 8.138636831 8.167328385 8.12119109 8.306250187 8.254123704 8.392441208 8.147657196 90104758 fnr Stress Oxygen stress Rhodopseudomonas palustris BisB18 8.695139488 8.656280971 8.661037196 8.131804103 7.976618149 8.181713662 8.031864588 7.842232532 8.092306723 8.050654318 7.920391802 8.163313165 264671363 fnr Stress Oxygen stress Caulobacter segnis ATCC 21756 8.342510144 8.312909976 8.364289256 8.049965549 8.247535798 8.645680981 8.826310971 8.419280295 8.819486102 8.466195281 8.479392106 8.694433437 126460485 pstC Stress Phosphate limitation Pyrobaculum calidifontis JCM 11548 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum calidifontis; 8.468277247 8.006104271 7.637261338 8.203692576 8.251531257 8.399338734 8.053245936 8.059682389 7.741851842 91787789 phtA Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 9.077123638 9.279420204 9.613844514 9.072766781 9.10028799 8.830411486 9.258752637 9.554125929 9.067944669 9.323843698 9.060696816 9.267684834 119951067 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 8.127442016 8.154463286 8.281144357 7.786253434 7.398528963 8.039525019 7.874379585 7.505840723 8.03051991 7.689188141 7.79573019 7.478820441 88815155 aclB Carbon cycling Carbon fixation marine actinobacterium PHSC20C1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 8.345017494 8.456612334 7.874131974 7.344132348 7.546058119 7.54369119 7.325048506 8.198411723 7.967784858 7.988215915 219861317 nmoA Organic Remediation Aromatics Nitoaromatics Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 10.48443134 10.28025172 10.25993645 9.890547379 9.799712691 9.605935702 68164622 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.978985715 8.673354805 8.578850283 8.472153212 8.158488632 8.475223423 8.611635899 8.362125543 8.504908708 8.348213501 8.597722481 8.421620283 103488536 ChrA Metal Resistance Chromium Sphingopyxis alaskensis RB2256 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 8.344896962 7.528578956 7.505599053 7.424417516 6.990965219 7.594573032 7.396196828 7.547637624 119671665 sigma_24 Stress Sigma factors Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8.182747099 8.437739999 7.523274569 7.804385141 7.744970012 8.009373306 7.72154001 8.35072717 8.250217656 126320320 HBH Organic Remediation Aromatics BTEX and related aromatics Pseudomonas putida GB-1 8.219574582 8.25459381 8.20998034 8.504065502 8.392671467 8.073895037 8.41830806 8.664884936 8.380642241 8.70808753 8.5037697 8.640647525 117959685 phenol_oxidase Carbon cycling Carbon degradation Lignin Ganoderma lucidum superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Ganodermataceae;genus:Ganoderma; 8.488042866 9.21614382 8.866574537 8.204622431 8.809195835 9.087481214 148838875 tutFDG Organic Remediation Aromatics BTEX and related aromatics Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 8.556612228 8.300081134 8.386410612 7.704913533 7.586546991 7.650262118 7.288244396 6.974792076 7.543987824 7.349090452 7.458443328 27382750 exaA Organic Remediation Chlorinated solvents Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 9.07967323 9.091999933 9.064747477 8.314325488 8.292707219 8.349042573 8.407367866 8.160789451 8.341898684 8.195888778 8.536519496 120406161 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 9.23288749 9.023114236 8.979317669 8.849638865 8.943111347 8.748916091 8.650522833 9.011699642 8.479539273 8.757030704 8.77945603 9.074520295 148254021 nmoA Organic Remediation Aromatics Nitoaromatics Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.908714171 8.845030802 8.885593936 8.075317614 8.184605239 8.6731836 8.566499639 8.354569373 8.550935198 8.707910562 8.74521585 53804637 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 8.512550007 8.336571819 8.675745513 8.319959513 8.203552628 7.961374679 8.118155119 8.707699326 8.567912247 8.417286735 8.643230263 147830109 pcc Carbon cycling Carbon fixation Clavibacter michiganensis subsp. michiganensis NCPPB 382 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 9.744787366 9.524375817 9.36230551 9.936946777 9.377739725 8.978982149 9.600631388 9.694465024 9.458614849 9.608104993 9.740073126 9.058508522 115283026 cellobiase Carbon cycling Carbon degradation Cellulose Burkholderia cepacia AMMD superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 8.649043349 8.488034386 8.627171183 8.347716272 8.494171281 8.869360327 8.962776417 8.573591398 8.946118662 8.674448544 8.336278952 8.861056151 12667558 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium UMTRAdsr826-25 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 8.424262415 8.124937634 8.549741045 8.384952618 8.581917213 7.910537347 8.494513247 7.962372283 8.208470693 8.530028521 8.297455597 171683651 pheA Organic Remediation Aromatics Other aromatics Podospora anserina superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 7.245663276 7.288798914 7.50565429 7.282819329 7.388914059 7.683345158 7.317942279 7.288152637 7.878488022 170742494 TerC Metal Resistance Tellurium Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 8.394539215 8.69705202 8.14983878 7.914077861 7.827564394 8.214566714 8.471891312 7.89762723 8.428339082 7.36319738 7.992366347 7.499568619 219883041 sigma_70 Stress Sigma factors Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 8.531509726 8.662084578 8.676012979 8.697844048 8.375678801 8.184648656 8.452605869 8.484173242 8.374064349 8.438350981 8.272286558 8.30616386 116620306 exaA Organic Remediation Chlorinated solvents Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 8.698194534 8.522958336 8.598442963 8.144841128 8.276685467 8.01007444 7.951178718 8.214920001 8.177824856 8.006684594 7.925330803 8.103188039 22449955 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.702671104 8.891787637 8.725926496 8.239614034 8.217670679 8.227265262 7.912304913 7.712135033 8.446742618 7.859946488 7.81564809 8.261949508 84499456 pimF Organic Remediation Aromatics Aromatic carboxylic acid Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 9.484846875 9.4264034 9.520769945 8.623226986 8.641568145 9.016744218 9.8686051 9.411972984 9.730244974 8.881764008 9.056838466 8.945451521 227488477 glnA Stress Nitrogen limitation Corynebacterium glucuronolyticum ATCC 51867 8.063286514 7.705560673 7.166453645 7.95974663 7.855264048 7.832445324 7.675613373 7.447106229 242229285 katE Stress Oxygen stress Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 9.034668029 9.298704861 9.409293559 9.13597389 9.067996822 8.837716182 8.981677174 9.463875951 8.991037791 9.298082981 8.923333366 9.324895136 126641159 pimF Organic Remediation Aromatics Aromatic carboxylic acid Acinetobacter baumannii ATCC 17978 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 8.365422898 8.107920406 8.306118924 7.672701574 7.980335734 8.427479797 8.265299132 8.557109979 8.230556465 8.495347814 8.636177886 8.547699618 218673552 endoglucanase Carbon cycling Carbon degradation Cellulose Rhizobium etli GR56 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.827592856 8.631018716 8.457286987 8.661104532 8.45529813 8.279038894 8.554621585 8.44638319 8.537503107 8.520430514 8.370027529 8.479105485 22213650 Fe_S_cluster_binding_protein Bioleaching Electron transport Acidianus ambivalens 8.458132105 8.158939684 8.608070841 7.542806541 7.592764749 7.630995637 7.101918301 7.13846969 8.124719726 7.56475112 7.185759005 7.744501037 260575231 fnr Stress Oxygen stress Rhodobacter sp. SW2 9.652907632 10.09077386 9.480180166 9.334546182 9.865455785 9.8394424 10.08201993 10.11267625 9.886095471 10.49330284 10.24134021 10.22239446 227949209 pstC Stress Phosphate limitation Meiothermus ruber DSM 1279 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 8.999442799 8.460586265 8.70018941 8.316325067 8.275156509 8.106502594 29605619 linB Organic Remediation Pesticides related compound Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 8.6456606 8.647268904 8.364020232 8.037062062 8.125535808 8.340917016 8.171823232 7.991467034 8.296794386 163794837 pcaG Organic Remediation Aromatics Other aromatics alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 8.775401107 8.602741302 8.453241056 8.59950084 8.471490519 8.350635073 8.582504303 9.032021041 8.706438284 8.741892475 8.516948573 8.816338692 115390701 endoglucanase Carbon cycling Carbon degradation Cellulose Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 8.93549404 8.514444379 9.010233061 8.327302848 8.420636561 8.240326536 8.009541377 7.965889251 8.226970078 7.887302245 7.84249161 8.272748958 152970424 bphA Organic Remediation Aromatics Polycyclic aromatics Klebsiella pneumoniae subsp. pneumoniae MGH 78578 8.520004941 8.266102451 8.433215324 8.282072584 8.130907102 7.962895602 7.972201553 8.072124975 8.380383935 8.049399701 8.051512446 8.176465141 197087924 cytochrome Energy process Energy process Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 8.753088628 8.536900872 8.685232333 8.359659426 8.146484092 8.126013856 8.188930076 8.232307071 8.299082782 8.068391344 8.050405756 8.268149644 259480215 phenol_oxidase Carbon cycling Carbon degradation Lignin Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 8.069767318 7.939989365 7.578703972 7.319678399 7.667607642 7.342506628 7.195952466 7.359321333 7.460116726 7.468240901 84786811 SilA Metal Resistance Silver Erythrobacter litoralis HTCC2594 8.420368866 8.36195404 8.430250145 8.66391722 8.122190249 7.723079545 8.101680584 8.272582767 8.482383834 8.290088644 8.128228154 8.009465741 153005009 ahpC Stress Oxygen stress Anaeromyxobacter sp. Fw109-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 8.87560748 8.763049399 9.143013281 8.646539826 8.784035 8.897029773 8.71037562 8.714132451 8.659344522 8.720690686 9.02719453 8.746426808 85704601 atzA Organic Remediation Herbicides related compound Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.320627849 8.421760622 8.290853374 7.883615152 7.730660251 8.118247524 8.1858783 8.190652988 8.354234946 8.161381935 8.091536913 8.400867403 111026237 AmiE Organic Remediation Aromatics Other aromatics Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.8557312 8.941074198 9.105738683 8.58904534 8.676197676 8.625501447 8.67447828 8.710825786 8.645707477 8.632993302 8.702748926 8.849282614 95111183 Catechol Organic Remediation Aromatics Other aromatics Pseudomonas superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae; 9.74174066 9.715008718 9.815638076 9.454637055 9.692007894 9.679377078 9.485055421 10.01105149 9.059844138 9.562894276 9.479663209 9.922240936 229589660 glnA Stress Nitrogen limitation Pseudomonas fluorescens SBW25 9.120254705 9.24320209 9.549492272 8.433452397 8.529629045 8.511690829 8.723366053 8.467329292 8.375704882 8.399465599 8.321412001 8.598624351 110632212 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.374060411 8.558092613 8.579400796 8.089099779 8.505727843 8.780911874 9.140615246 8.199278574 8.946567473 8.274461825 8.59778202 8.499150367 119391597 narG Nitrogen Denitrification uncultured bacterium 8.850670059 8.844512236 9.060698128 8.81198702 8.719342789 8.599336682 9.200018299 8.932900835 9.020188467 8.82897469 8.738717445 8.656369657 117165055 sigma_24 Stress Sigma factors Streptomyces ambofaciens ATCC 23877 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ambofaciens; 9.254052639 9.046495907 8.813808874 9.003160111 8.712799255 8.844854251 8.576147784 8.977540424 8.878007613 9.067004416 9.175508157 8.888759135 39936964 Mex Antibiotic resistance transporter Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.265143826 8.58757303 8.618624862 8.655427474 8.556262369 8.448618313 8.396668396 8.759964937 8.687397659 8.588781313 8.52600954 116621213 ara Carbon cycling Carbon degradation Hemicellulose Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 8.987857159 9.289808202 9.212171955 8.168005683 8.661782433 8.593001698 9.010292539 8.744568756 8.907643459 8.307775148 8.704355149 8.638686576 15141294 MFS_antibiotic Antibiotic resistance transporter Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 10.14617007 9.892464557 9.897353241 9.780808385 9.591895752 9.448133373 10.01004051 9.591885199 10.32403812 9.534767662 9.548757113 9.556944638 225197033 sigma_32 Stress Sigma factors Desulfonatronospira thiodismutans ASO3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfonatronospira;species:Desulfonatronospira thiodismutans; 9.926998514 9.768330425 9.801668082 9.072336051 9.123907241 8.965670749 9.240731191 9.215415787 9.098628914 9.384423589 9.497708717 9.468321062 53804883 exaA Organic Remediation Chlorinated solvents Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 8.99189771 8.925884043 8.978740671 8.679376093 8.513971754 8.149792227 8.444809239 8.534799705 8.564063639 8.767780618 8.626334233 8.802076322 167749179 mannanase Carbon cycling Carbon degradation Hemicellulose Eubacterium siraeum DSM 15702 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium siraeum; 8.598159488 8.1997344 8.535538441 8.350225427 8.308692621 8.234306526 8.191867552 8.149111251 7.976369472 8.073763068 8.007447007 7.834591376 94471279 narG Nitrogen Denitrification uncultured bacterium 9.380413731 9.294285051 9.419133117 8.96714811 8.972670167 8.902454367 8.843974753 8.687325108 8.717060964 8.754554835 8.954277797 8.794329841 67534216 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 8.459555005 8.171839678 8.472558811 8.344512487 8.200678144 7.913256012 7.916011946 8.077157509 8.007668721 7.791619487 8.032880177 120594883 nagG Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8.909173095 8.988142291 9.066611253 8.184812737 8.09490935 8.262679701 8.780359707 8.331594858 8.843489515 8.348487159 8.120957129 8.548644169 86557490 CopA Metal Resistance Copper Synechococcus sp. JA-2-3B'a(2-13) superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.110546617 8.572298193 7.79378956 7.355645041 7.571901129 7.165569682 7.387451906 7.62477684 7.239480311 7.783335705 166364582 nirA Nitrogen Assimilatory N reduction Microcystis aeruginosa NIES-843 8.950533523 9.181118608 9.14107013 8.178010246 8.187884078 8.019843365 7.883611251 7.887565473 8.097336873 8.132373801 8.083992551 8.400749978 169814075 pilin virulence pilin Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 9.063532338 9.153806358 9.29405422 8.326935625 8.204909789 8.281442788 7.923823201 7.986691601 8.115896912 8.243944613 8.232466497 8.505051873 197088418 sigma_38 Stress Sigma factors Geobacter bemidjiensis Bem 9.023542759 9.087621023 8.620073562 8.465435984 8.206412178 8.412443444 8.556053273 8.511656642 8.430683603 8.535980421 8.481015441 8.493076034 269794162 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Sanguibacter keddieii DSM 10542 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Sanguibacteraceae;genus:Sanguibacter;species:Sanguibacter keddieii; 8.760692976 8.484431362 8.342208081 8.85240524 8.636295559 8.421657612 8.68944508 8.810291354 8.42173533 8.676299699 8.78418179 8.382310594 197105153 ppk Phosphorus Phosphorus utilization Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 7.919723759 8.269090026 7.970041582 7.592868385 7.895536599 8.50593656 8.12682161 7.902661908 7.594842776 7.739561269 7.724236267 39934782 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.950287783 8.810184186 8.997419118 8.974901734 8.673653574 8.192549279 8.866426676 8.831679002 8.871728095 8.860544764 8.693330716 8.427022369 210073326 CopA Metal Resistance Copper Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 8.421433829 7.977937066 8.481395734 7.715095905 7.640682403 8.138989994 8.194060654 7.940858983 8.698999186 7.549612752 7.724886538 7.884230524 35213249 tfdA Organic Remediation Aromatics Chlorinated aromatics Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 8.46456082 8.594326228 8.260702604 8.448833099 8.678848609 8.230226293 8.521472744 8.485551215 8.255836515 8.609322834 8.312226704 116634795 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.287664479 8.713732466 8.317404477 8.426362507 8.489914264 8.522473572 8.231995875 8.739845183 8.369084733 8.749539338 8.857984251 8.191903747 241776286 AceB Carbon cycling Carbon degradation others Allochromatium vinosum DSM 180 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 8.405642563 8.533586104 8.031316924 8.032105184 8.438823873 8.175891457 8.589545469 8.360492185 8.506382846 227963712 ahpC Stress Oxygen stress Tsukamurella paurometabola DSM 20162 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 9.667991455 9.387011815 9.68086561 9.065090022 8.890226466 8.975640838 8.915659057 8.916558312 8.87501023 9.064465576 9.016204927 9.195656607 71846863 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 7.434699222 7.433266023 7.209241756 7.497924687 254432632 nasA Nitrogen Assimilatory N reduction Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 9.056715135 8.859457261 8.707342767 8.900265854 9.041468594 8.695731733 8.814090231 8.785629766 8.546739855 8.720212309 8.757145479 8.550650393 148239454 ahpC Stress Oxygen stress Synechococcus sp. WH 7803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.286700543 8.336118424 8.31748507 7.74637029 7.913499936 8.029386265 8.088901582 8.342949321 8.010673131 8.586806498 8.550264714 8.275599109 148261022 drug_resistance_transporter Bioleaching Antibiotic Resistance Acidiphilium cryptum JF-5 9.083570607 8.979387843 9.356962292 8.67571028 8.673222301 8.607602167 8.530782909 8.639491416 8.580800717 8.489279632 8.590479587 8.770856413 197716573 linC Organic Remediation Pesticides related compound Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 8.425812154 8.359742017 8.526711716 8.030791914 7.946427533 7.826603582 7.54519853 7.918455345 7.913065813 7.701769665 7.718182802 7.882287451 84502904 nhh Organic Remediation Aromatics Nitoaromatics Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 9.189901608 9.095560536 8.938778468 8.1035814 8.462113294 8.803598524 9.071316536 8.195866624 9.089083181 8.361290188 8.598627499 9.05527349 227273374 cellobiase Carbon cycling Carbon degradation Cellulose Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 9.728557688 9.770644206 9.647246495 8.949507423 9.17517394 9.514300055 9.388307062 9.162703579 9.598036755 9.587503183 9.496956326 9.577446709 154319975 katE Stress Oxygen stress Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 9.140939023 8.441810013 8.520145018 9.112708192 9.266447392 8.821546072 9.458812155 9.368438465 8.538664125 9.025716224 8.502122234 119535591 nahA Organic Remediation Aromatics Polycyclic aromatics Nocardioides sp. JS614 8.252219921 8.463021483 8.345009738 8.117079196 8.355936517 8.54938837 8.453724299 7.682435281 7.822638383 7.934531394 8.112767926 8.013560044 120595528 fnr Stress Oxygen stress Polaromonas naphthalenivorans CJ2 9.652605809 9.771367363 9.73316003 9.264111128 9.17435659 9.106420513 8.888844851 8.874456372 9.016385412 9.067316506 9.185568114 9.423438944 29606527 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 8.701404474 8.361306752 9.052533744 8.846855256 8.999642236 8.120145125 9.069775911 8.514030934 8.685065419 9.128310861 8.274025683 158439720 ChrA Metal Resistance Chromium Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 8.478231896 8.381405103 8.735521568 7.944614118 7.622981885 7.934265303 7.768829646 7.588793906 7.72195676 7.50388208 7.473940457 7.936783216 54014608 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 8.450100961 8.457406546 8.656160145 8.240804951 8.309210134 8.511448286 8.724082978 7.907808415 8.680273261 8.20334716 8.296382494 8.294505831 162146359 cydB Stress Oxygen limitation Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 8.25450192 8.518393284 8.430731454 8.256565543 8.227799577 8.395190892 7.760842475 8.129107805 8.295691475 7.960010282 7.967661499 7.974795879 167068723 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.410759098 8.251020445 8.159983316 8.018961054 8.03589343 7.931897838 7.95994845 8.025227335 7.977850252 7.82911748 7.762470339 7.46878518 227069643 nirA Nitrogen Assimilatory N reduction uncultured archaeon 9.490493567 9.44839021 9.462265374 8.999130835 8.89767145 8.856905902 9.0107333 8.903544899 8.876711467 8.944584934 8.978990011 9.04401742 126593965 pstB Stress Phosphate limitation Bacillus sp. B14905 8.424912063 8.657849513 8.571243658 7.434083525 7.586830213 7.670785206 7.69188539 7.370463993 7.774400829 7.499909436 7.393701858 7.695617183 212685126 dmsA Organic Remediation Others Providencia alcalifaciens DSM 30120 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 8.796301218 8.464895646 8.728039977 7.839629393 7.679442685 7.544240867 7.406633151 7.921907743 8.188283754 8.184102408 226935078 lip Carbon cycling Carbon degradation Lignin Pseudotrametes gibbosa 9.6480275 9.326021531 9.781668912 9.473053397 9.437449282 9.269388865 9.426087738 9.630496909 9.490441138 9.487691768 9.336918742 9.603361883 13421273 gyrB other category gyrB Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 8.198264932 8.119220235 7.479504173 8.455087963 8.356935678 8.598591547 8.140263399 7.937779914 7.989315186 139003282 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.613664658 8.316748222 8.222519567 7.745721926 7.98854991 7.590920932 7.542724902 7.466461538 7.406232274 7.453630608 7.903286921 237653467 pstB Stress Phosphate limitation Thauera sp. MZ1T 9.636394657 9.220470619 9.341255049 9.334918172 9.052905123 8.883897144 9.325099592 9.325703787 9.529368976 9.301197218 9.189455549 8.922495648 88789773 pilin virulence pilin Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 8.23140213 8.064920857 7.564125498 7.569887875 7.775017175 7.824088022 6.844724258 8.010584398 7.480034699 7.389607577 7.459557507 229543802 hrcA Stress Heat shock Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 9.051101785 8.97067629 9.033568876 8.489157435 8.515683196 8.299927226 8.56508197 8.422487335 8.506362585 8.818942781 8.525735326 8.468201642 78776860 ppx Phosphorus Phosphorus utilization Thiomicrospira denitrificans ATCC 33889 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Sulfurimonas;species:Sulfurimonas denitrificans; 8.926269326 8.935188611 9.086074471 8.571575217 8.365199256 8.386174775 8.073238261 8.055053988 8.643834102 7.887830006 7.980029289 8.34018551 42558544 ZntA Metal Resistance Zinc Pseudomonas sp. B0310 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 9.551392809 9.638934074 9.595849164 9.420671816 9.566674163 9.338283011 9.649178049 9.82573474 9.579816028 9.723599822 9.492588638 9.323549166 149277731 fnr Stress Oxygen stress Pedobacter sp. BAL39 8.466630937 8.945222466 9.035295093 8.179509422 8.245834698 8.377976697 7.966112971 8.191538355 8.497208275 8.618145172 8.589138594 8.361036201 163740703 sigma_32 Stress Sigma factors Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 9.644741487 9.52253807 9.74308747 8.839781096 8.418829278 8.831283006 9.102069306 8.939950871 8.721723716 8.884028648 9.179624151 9.132211166 21322770 gyrB other category gyrB Corynebacterium glutamicum ATCC 13032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 8.812539641 8.841348683 9.155238807 8.36147532 8.193121794 8.224536309 7.827873595 7.818962778 8.098612428 8.147652804 7.95928385 8.391856235 188520177 pilin virulence pilin Xanthomonas oryzae pv. oryzae PXO99A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 7.234922697 6.961966807 7.726865799 77378513 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.559034914 9.335734259 9.510236674 8.885248633 8.791979684 8.684175453 9.013531406 8.915008303 8.828435058 8.797348192 8.813322037 8.935744163 73535185 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.296908625 8.205841232 7.366435793 7.078912768 7.185733929 6.801911134 6.75822673 7.333547472 6.949964842 7.072205699 7.409374709 146304086 formate_dehydrogenase_family_accessory_protein Bioleaching other category Metallosphaera sedula DSM 5348 9.239994995 8.94491416 8.97414402 8.334611566 8.285795952 8.45667371 8.099351787 7.987456535 8.069648442 7.984167425 8.520711325 160895932 mer Metal Resistance Mercury Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.301484138 8.080778433 8.303272391 8.032832559 7.831966138 7.942163403 7.868818994 7.650276341 8.198406051 7.487362306 7.594589206 7.722523466 87136303 glnA Stress Nitrogen limitation Novosphingobium aromaticivorans DSM 12444 8.996890118 9.49824352 9.613560689 9.296497136 9.451484413 9.183531489 9.379870373 9.918926046 9.525254161 9.954339777 9.612637212 9.837423779 146400201 heavy_metal Bioleaching Metal Resistance Acidiphilium cryptum JF-5 7.966372922 7.968731205 7.618261127 7.462599556 8.0447057 7.971650577 8.149316871 7.456938356 8.116224577 121589589 AceA Carbon cycling Carbon degradation others Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 9.397085546 9.330277588 9.39681616 8.927000788 8.850666999 8.729334964 8.491686759 8.664559135 8.729742809 8.766399768 8.789948071 8.94924064 116253959 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.875436447 9.129699173 9.076628336 8.721885478 8.566213932 8.466844088 8.551479805 8.7188561 8.922129041 8.608806906 8.449831262 8.422283277 220696171 Catechol Organic Remediation Aromatics Other aromatics Aspergillus flavus NRRL3357 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus flavus; 8.459839343 8.365239308 8.423428397 7.674640456 7.346876866 7.493321837 7.356905249 7.645333977 7.804566867 7.310618735 7.613011033 7.818235125 261404481 amyA Carbon cycling Carbon degradation Starch Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.233662462 7.687057677 26278676 narG Nitrogen Denitrification uncultured bacterium 8.409814571 8.387331297 8.412533078 7.870932665 7.928705611 7.993274954 8.100649741 7.942039885 8.219075626 7.935716998 8.000448229 7.898105986 9294824 B_lactamase_C Antibiotic resistance Beta-lactamases Hafnia alvei superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Hafnia; 8.438337928 8.286558106 8.41656432 8.440637904 7.99078716 8.257640296 7.502246774 7.832942158 8.049930716 7.976472093 8.341552895 8.217489598 84703511 fnr Stress Oxygen stress Parvularcula bermudensis HTCC2503 9.033019584 9.180574071 9.273829151 8.517897541 8.613077407 8.422295523 8.46744598 8.377261773 8.537584853 8.398102944 8.406201347 8.712897949 68347523 ahpC Stress Oxygen stress Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.392341091 8.234117006 8.288097848 8.174417804 7.912979554 7.771778939 8.086598376 7.791894507 8.192699689 7.834470709 7.512305939 8.046696587 227377210 grpE Stress Heat shock Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 8.684469581 8.536556337 8.706858385 8.465519093 8.891393237 8.565890206 8.033787739 8.754910461 8.416232687 8.576929333 8.557500236 8.974201209 150962795 ChrA Metal Resistance Chromium Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.067348536 8.097844501 7.79942936 7.723182455 8.070538514 7.938861956 8.232996179 7.982493714 7.7866271 118762756 vanA Carbon cycling Carbon degradation Others Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.892078069 8.814098137 8.624766454 8.957090541 8.67220352 8.984410136 9.613131164 8.997129201 9.418251063 8.937547194 9.311073017 69934164 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.693088755 8.484829243 8.380365687 8.188235765 8.235699839 8.468670159 8.697387693 8.667388895 8.761279552 8.879041307 8.653932715 8.874313864 148259836 cbb Bioleaching Carbon fixation Acidiphilium cryptum JF-5 8.193397975 8.167219419 8.602276092 8.537760024 8.542256075 8.002386176 8.667760968 8.180677204 8.479162668 8.61661839 8.175188884 154498690 clpC Stress Protein stress Bacteroides capillosus ATCC 29799 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides capillosus; 9.873090703 9.709589366 9.690282388 9.241979221 9.28362098 9.29552938 9.294863339 9.126320038 9.439940749 9.346812233 9.288918447 9.604602046 159873713 glnR Stress Nitrogen limitation Carnobacterium sp. AT7 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Carnobacteriaceae;genus:Carnobacterium; 7.982272521 7.991665405 8.270018915 8.01651164 8.181733484 8.09984952 7.926680903 7.438039384 8.041525501 227069699 NiR Nitrogen Assimilatory N reduction uncultured archaeon 8.060373765 8.191865592 7.782328644 7.647227282 7.629018421 7.634493234 7.636459527 8.036024892 7.625728353 7.645240277 7.799331137 125497701 pstB Stress Phosphate limitation Streptococcus sanguinis SK36 8.361426659 8.391500227 8.46522581 8.112052276 7.816298617 7.490235518 7.550574879 7.54693709 7.715597129 161331584 cytochrome Energy process Energy process Shewanella benthica KT99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella benthica; 8.272945785 7.854720928 8.26349298 7.163584487 7.486378457 7.284143785 7.220965002 7.984176464 189466411 ara Carbon cycling Carbon degradation Hemicellulose Bacteroides intestinalis DSM 17393 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides intestinalis; 7.93529661 8.03060033 7.908469803 8.151095044 7.956964132 225872587 pstB Stress Phosphate limitation Acidobacterium capsulatum ATCC 51196 8.095156658 8.327896425 7.334149091 7.379550629 7.190924295 6.905897645 6.841013802 7.526111654 7.068976981 7.227933267 94550506 pcc Carbon cycling Carbon fixation Acidobacteria bacterium Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 9.398532186 9.304495964 9.238224688 8.979881489 8.815656825 8.729359952 8.57589745 8.73136923 8.454097008 8.748053619 8.807905683 9.044566703 222475905 mer Metal Resistance Mercury Halorubrum lacusprofundi ATCC 49239 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 8.166641031 8.197383503 8.588637443 8.219243207 8.382341781 8.874517499 8.995419359 8.347208128 13475776 oxyR Stress Oxygen stress Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 8.165564251 7.889429583 8.118772738 8.346528783 8.274892983 7.937763381 8.453100744 8.173939865 8.231733647 260947438 ahpC Stress Oxygen stress Clavispora lusitaniae ATCC 42720 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Metschnikowiaceae;genus:Clavispora;species:Clavispora lusitaniae; 9.366749658 9.497414836 9.309820097 9.438856834 9.317759579 9.33818116 9.528347834 9.436939902 9.586058221 9.82929824 9.801825829 9.563613065 197210271 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.363270202 8.353530194 8.456314295 8.295097151 8.341595732 8.068433816 8.333162782 8.4717582 8.270728129 8.32248566 8.203134857 8.495486862 113867426 bclA Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.147095253 8.0732902 7.999902099 7.71826775 8.472350726 8.249210807 8.377044961 8.304131119 8.434237094 197783424 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 8.369430671 8.28065229 7.576533878 7.374963739 7.824827227 8.266197931 7.275049654 7.863315525 7.447144317 7.838082122 21225109 pstS Stress Phosphate limitation Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.30665304 8.455467977 8.319560697 8.294999897 7.913140377 8.703839058 8.604293462 8.222839427 8.562709533 8.187816761 7.757778936 118402680 pmoA Carbon cycling Methane Methane oxidation endosymbiont of Bathymodiolus childressi sp. M34.3 superkingdom:Bacteria; 8.261581912 8.351315357 7.39920166 7.215745811 7.432089393 7.099952983 6.831028179 7.561752992 7.359495788 7.217071858 7.635872019 218290353 sigma_24 Stress Sigma factors Alicyclobacillus acidocaldarius LAA1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 8.667446835 8.201246072 8.390464044 8.023703956 8.246092915 7.909700378 8.003829757 8.042540915 7.837541628 8.020837018 7.999655108 7.831900461 229763531 glnA Stress Nitrogen limitation Streptosporangium roseum DSM 43021 9.994929596 9.87807339 10.03862838 9.395947644 9.103616448 9.315597721 9.278609086 9.204576674 9.193765936 9.347209223 9.444351239 9.556157336 163258490 cydB Stress Oxygen limitation Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 8.79531524 8.974323165 8.781668884 8.794326777 8.619211789 8.275028758 8.560609376 8.318331936 8.570458763 8.686031964 8.59410244 8.401681307 83311941 linC Organic Remediation Pesticides related compound Magnetospirillum magneticum AMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 8.46419457 8.389145344 8.681683567 7.991622306 8.24229832 7.546651203 7.528913767 8.135016896 7.997441049 8.077022879 8.468359537 120563656 TerC Metal Resistance Tellurium Desulfovibrio vulgaris subsp. vulgaris DP4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 8.537593273 8.479069077 8.375472887 8.612798247 8.680314081 8.38879048 8.15533253 8.722839222 8.57750157 8.476190836 8.818393629 281334003 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 8.725483022 8.870466104 9.12076513 8.39650372 8.409657153 8.454232737 8.36452213 8.518126776 8.466532527 8.440704836 8.045346235 8.510140334 14209495 CopA Metal Resistance Copper Bradyrhizobium elkanii superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.156885349 8.218501877 8.545572319 8.498748034 8.598460917 8.036279989 8.509096993 8.404495763 8.471045647 8.563110075 7.921470133 119504299 linC Organic Remediation Pesticides related compound marine gamma proteobacterium HTCC2080 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.84494053 8.659843336 8.679041772 8.028997137 8.162283384 8.208355396 7.678097335 7.826730339 7.921671421 7.88007361 7.989458535 8.215371981 89084686 TerZ Metal Resistance Tellurium Bacillus sp. NRRL B-14911 8.56503233 8.316409664 8.597309089 8.228282881 7.984455184 7.918345963 7.676821624 8.126163368 8.245606404 8.07515065 7.754305355 8.119173248 29606982 pcc Carbon cycling Carbon fixation Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 8.787518837 8.619697431 9.049662416 8.244194924 8.18700426 8.301970537 7.986389092 8.144059904 8.193742019 8.317713443 8.563466466 254269803 fnr Stress Oxygen stress Methylobacterium extorquens DM4 9.597205958 9.451236976 9.327878603 9.348396285 9.287843502 9.496535725 9.79243779 9.492533609 9.947245917 9.347135105 9.20702285 9.268028321 115401988 phenol_oxidase Carbon cycling Carbon degradation Lignin Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.343380556 7.595933895 7.030549555 6.882778503 6.848001391 7.358983645 6.792091567 7.072017291 212558520 ahpF Stress Oxygen stress Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 8.665637985 8.568936346 8.52367558 8.169476252 8.073235391 8.011855895 7.860878739 7.908745832 8.292052177 7.861228425 8.127093122 8.163646686 196477572 narH Stress Oxygen limitation Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 9.206516553 8.966800589 8.938599872 8.633901731 8.60114619 8.388512971 8.397141996 8.590958871 8.457252488 8.664908675 8.55309823 8.658796303 119957385 glnA Stress Nitrogen limitation Mycobacterium vanbaalenii PYR-1 8.449737831 8.380382993 8.493742436 8.401781191 8.193027743 7.893879843 7.77100316 8.274767898 8.156582307 8.065086259 8.069643447 8.2720457 111022766 bphC Organic Remediation Aromatics Polycyclic aromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 9.046085033 9.17139959 9.162767781 8.845598951 8.784346097 8.525175126 8.640808282 8.52652916 8.451179314 8.589973175 8.414861578 8.609625332 256758170 hly virulence hemolysin Thiomonas intermedia K12 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas;species:Thiomonas intermedia; 9.124092068 8.953026512 9.03067041 8.659857133 8.710457993 8.729912391 8.353207995 8.790137504 8.459267954 8.559660734 8.585601593 8.633293379 238794755 iuc virulence aerobactin Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 8.668492565 8.154269044 8.299156689 7.977974655 7.687475212 7.749138889 7.810676945 7.654131645 8.044086444 7.691076056 7.651808151 8.052808322 119226164 gyrB other category gyrB Gordonia bronchialis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 8.815877754 8.939104369 9.008881843 8.892792949 8.8832941 8.634125183 8.863049382 9.006666117 9.015775655 8.947859814 8.575429391 8.85065716 253699925 nrfA Nitrogen Dissimilatory N reduction Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 9.553789877 9.434929906 9.606030626 8.964250008 8.614679589 8.90598184 8.498373346 8.297949114 8.599145734 8.584851096 8.872148208 182382456 narG Nitrogen Denitrification uncultured bacterium 9.39426484 8.666563699 8.301871674 9.421895712 9.085498498 8.84742517 9.51120792 9.436689663 9.204120043 9.296236891 9.149173302 8.847580681 19909641 gyrB other category gyrB Rhodovulum strictum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodovulum; 8.481731085 8.383708797 7.93338814 8.271437906 7.827706135 8.197942963 8.002193796 8.103586684 8.099259146 8.375463795 88792737 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 9.091360103 9.032279125 9.176058358 8.315744261 8.453494498 8.353731061 8.350119782 8.272289056 8.345576416 8.111694123 8.022734245 8.695195093 85774489 cap virulence capsule Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 8.470890609 8.608252633 8.590631972 9.176101187 9.185436041 9.017220695 8.504602259 9.260155894 8.603777551 8.894658226 8.910964028 8.95497878 158424782 nmoA Organic Remediation Aromatics Nitoaromatics Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 8.711571148 8.616300961 8.249726242 8.873378229 8.7848075 8.602899917 9.088776186 8.879569457 8.828933227 8.890027426 8.906046744 8.574711772 227948442 fnr Stress Oxygen stress Meiothermus ruber DSM 1279 8.584914586 8.505146316 8.801332394 8.489204959 8.350879032 8.041262849 8.281183738 8.689649561 8.545826851 8.466704184 8.088131904 8.55792194 114321605 bphC Organic Remediation Aromatics Polycyclic aromatics Alkalilimnicola ehrlichei MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 8.964669037 8.754020839 8.825792335 8.271764179 8.306348033 8.194830568 8.150572294 8.289154592 8.128532503 8.343405292 8.2216877 8.399678054 145309501 gyrB other category gyrB Alicyclobacillus contaminans superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus; 9.100517944 8.563951613 8.761972658 9.062431184 8.800337994 8.554885917 8.847035662 8.855619895 8.71406243 8.799927003 9.023013936 8.157279257 116611044 obgE Stress Radiation stress Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8.473071421 7.954362329 8.102795014 8.222229701 8.339007139 8.058703579 8.267422665 8.253330116 8.51128476 8.422863165 8.085974158 60476259 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 8.254850904 8.474594875 7.722392724 7.876867529 7.956958589 8.375928116 7.798822421 7.683258622 7.511582321 8.027012979 169846188 phenol_oxidase Carbon cycling Carbon degradation Lignin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 8.411171812 8.737489533 8.350565256 8.090400633 8.180498841 8.415288719 8.576746488 8.707467192 179343901 iro virulence Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 9.174005325 9.182816411 9.060449 9.04935528 8.857925991 8.908061788 9.37882936 9.085276556 9.287425256 8.836173997 8.87449197 8.934805028 83952125 oxyR Stress Oxygen stress Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 7.803142035 7.999228773 7.63570178 7.426870937 7.7614929 7.921510255 7.817039001 7.902542441 7.698591473 189422786 ChrA Metal Resistance Chromium Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 8.574829087 8.57649133 8.29705449 8.573815486 8.456537663 8.529267268 9.080246291 8.673495004 9.049162902 8.810471488 8.67532118 23100717 katE Stress Oxygen stress Oceanobacillus iheyensis HTE831 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Oceanobacillus;species:Oceanobacillus iheyensis; 7.99981797 7.78028086 7.433004327 7.412026524 6.869712186 6.866181105 7.521953114 227514773 obgE Stress Radiation stress Lactobacillus fermentum ATCC 14931 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus fermentum; 9.27165394 9.258324442 9.109578104 8.47491724 8.427754833 8.694624232 8.892054352 8.417495542 9.234467306 8.298776823 8.40349983 8.700537673 151302302 AprA Sulphur adenylylsulfate reductase Desulfofustis glycolicus 9.283202593 9.038884574 8.766945986 8.99125706 8.861274254 9.087493173 8.950305366 8.992894589 9.223137974 78221546 cytochrome Energy process Energy process Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 8.98194665 8.972760615 8.917270174 8.086842769 8.695087735 8.670129813 8.822704724 7.446132319 8.725192687 7.987188652 8.340947925 8.113971165 149922630 oxyR Stress Oxygen stress Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 9.338077274 9.057754706 9.365658825 9.378452213 9.228567331 9.131150716 9.140222048 9.306953431 8.914458644 9.270269631 9.223122012 9.03635072 82736342 nhh Organic Remediation Aromatics Nitoaromatics Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 9.11543505 9.09304513 9.309771554 8.368733045 8.516967276 8.822283453 8.723288161 8.425721258 9.010081308 8.599810714 8.842338281 8.699536955 225200947 xylA Carbon cycling Carbon degradation Hemicellulose Proteus penneri ATCC 35198 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus penneri; 8.839412558 8.529239876 8.470685208 8.405794503 8.359815711 8.342897461 8.473735982 8.528565329 8.647786516 9.042432382 9.069008842 8.839968799 10639598 Fe_S_cluster_binding_protein Bioleaching Electron transport Thermoplasma acidophilum;Thermoplasma acidophilum DSM 1728 8.63250648 8.596750262 8.695506962 8.067474766 8.07267314 8.096918854 8.311030861 8.242533599 8.093383606 7.920605995 8.085393013 17385522 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.53288641 8.728773095 8.512391669 8.464712103 8.440634964 8.418887118 8.457343804 8.819520542 8.613716249 8.721061935 8.448056317 8.464297326 229869785 katE Stress Oxygen stress Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 9.269055191 9.36563291 9.000532464 8.639451173 9.097519912 9.14523517 9.174553113 8.97787437 8.934493238 9.00645112 8.983275976 8.956060017 120611182 pcc Carbon cycling Carbon fixation Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 8.484533088 8.416013133 8.28208403 8.329463189 8.360321358 8.259958856 8.367268337 8.519523501 8.364952936 8.62340662 8.491413172 8.421814948 222148646 gyrB other category gyrB Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 9.236766721 8.8855851 8.758679986 7.775447172 8.000234762 8.092152561 7.756376562 7.483962651 8.26888506 7.854982475 8.129322543 7.922511508 2911478 cda Carbon cycling Carbon degradation Starch Paenibacillus macerans superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 9.858199573 9.826314506 9.946327348 9.361970127 9.205166441 9.187537271 9.338179666 9.135528388 9.255193397 9.347315206 9.440353719 9.435782503 71164326 pilin virulence pilin Xylella fastidiosa Dixon superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xylella;species:Xylella fastidiosa; 8.25180818 8.266731907 8.070650272 7.572583629 7.540589367 7.59899668 7.544701891 257478231 sigma_24 Stress Sigma factors Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 8.347172324 8.358572843 8.400918465 7.861547994 7.627339057 8.037812609 8.057039787 7.979179351 7.934256129 7.868331094 7.581427663 119956958 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.621335115 8.643500387 8.678143216 8.283376802 8.374030444 8.082130075 8.445892344 8.713322328 107784965 APS_AprA Sulphur adenylylsulfate reductase Desulfovibrio desulfuricans superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 8.209057084 8.150249579 7.908785857 7.933339658 8.082945976 7.768119372 8.372942877 8.186708566 8.183208811 7.708747896 8.185719536 254441656 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 8.924542319 9.195236799 9.146633364 8.935590572 9.159523019 8.835547459 9.131156991 9.205364308 8.867039639 9.261930029 9.050542597 8.205844438 126348287 TerD Metal Resistance Tellurium Streptomyces ambofaciens ATCC 23877 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ambofaciens; 8.590469924 8.732634359 8.654061636 8.67410536 8.612194679 8.547958923 8.297292648 8.636937277 8.58232359 8.576417416 8.575958302 8.573716421 218751124 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.890666019 9.351438022 8.837466245 8.520531537 8.810908645 9.21291454 9.502184283 8.888127887 9.483935576 9.218951401 9.209514778 9.300363324 226320017 glnA Stress Nitrogen limitation Deinococcus deserti VCD115 9.212285693 9.274204469 9.539395309 9.359864323 9.430224612 9.246203723 9.084315829 9.697402547 9.129222318 9.516177871 9.524624484 9.340514993 34104421 pilin virulence pilin Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 8.899227105 8.84867033 8.667893471 8.728659169 8.89219257 8.89098497 9.416753687 9.046890386 9.114343881 8.77631466 9.131688109 8.844549084 159186643 katE Stress Oxygen stress Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.563842412 8.776860855 8.84999949 8.892399394 8.888109274 8.482536382 8.715204235 8.683359881 8.573003609 8.89055906 8.79897558 8.303704172 77690377 CODH Carbon cycling Carbon fixation Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.412155623 9.297854023 8.611484912 8.832024398 8.378456596 9.009989965 9.196547288 8.693229655 9.268363773 8.937872945 9.067405611 8.682095785 112359633 dmsA Organic Remediation Others Campylobacter jejuni subsp. jejuni NCTC 11168 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter jejuni; 8.456900113 8.116248341 8.371472624 7.709069798 7.734412636 7.677584399 7.313839524 7.423355014 7.892231125 7.418174867 7.554582129 7.753529848 163741760 phn Organic Remediation Herbicides related compound Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 9.251138639 9.100357515 9.338392289 8.896809881 8.928159476 8.973605678 8.530533437 8.822855496 8.540178887 8.883199429 8.982074457 8.823509684 238756157 SMR_antibiotics Antibiotic resistance transporter Yersinia ruckeri ATCC 29473 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia ruckeri; 8.388055976 8.532299326 8.523831286 8.2124629 8.277238592 7.870346404 8.031612205 8.336969433 8.211133309 8.301521199 8.604862219 90420481 ArsC Metal Resistance Arsenic Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 8.520993887 8.725996878 8.657652289 8.938756335 9.161241889 8.974195155 8.789909383 9.378745102 8.704217892 9.422615904 9.361952616 9.33426144 223892887 ara Carbon cycling Carbon degradation Hemicellulose bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 8.706082453 8.868661095 8.711793714 8.429381326 8.540192341 8.43568245 8.434139042 8.67315568 8.676521603 8.508997812 8.396110043 8.437410654 34498571 pilin virulence pilin Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 7.397953682 7.465592196 7.722400987 7.459296394 7.682901802 7.816592583 7.981765353 7.844617177 7.789920621 62196386 ureC Nitrogen Ammonification Brucella abortus biovar 1 str. 9-941 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Brucella;species:Brucella abortus; 8.378233428 8.210966185 8.3452596 7.72190271 6.986813676 7.857152234 7.922907389 7.482029116 7.727021788 7.952543353 8.049382767 27379744 ZntA Metal Resistance Zinc Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.761682755 8.637539651 8.607957867 8.446310237 8.471624225 8.288832685 8.604933171 8.938418722 8.617365208 8.741361302 8.471119165 8.746388117 219668365 dmsA Organic Remediation Others Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 9.553739476 9.071853063 9.549136664 8.790410323 8.602155078 8.596056486 8.294681075 7.941160458 8.443704338 8.390166422 8.293375272 8.721312666 193212316 sigma_24 Stress Sigma factors Chlorobaculum parvum NCIB 8327 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum parvum; 8.820389055 8.506478951 8.776755615 8.290279614 8.106929223 8.003080205 7.84282098 7.97801978 7.837799625 7.984432836 8.304227839 71556174 nitro Organic Remediation Others Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 9.354555187 9.6287414 9.600589965 8.945509212 8.896318853 8.932763531 8.915566891 9.068311408 8.94089971 9.177286389 9.081335464 9.230537807 115520555 cellobiase Carbon cycling Carbon degradation Cellulose Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.274537131 7.949200863 7.26224365 7.842835328 8.07239567 7.823282196 7.987007282 7.521050056 7.290742911 7.835947849 17742853 nirK Nitrogen Denitrification Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 10.38696239 10.29114029 10.41860022 10.01047532 9.981087334 10.11675625 10.11078252 9.799723665 10.43348897 10.21439776 10.26073977 10.39651379 254449969 Tet Antibiotic resistance other Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 9.824397312 9.872764389 9.994896636 9.140556229 8.750323713 9.126636232 8.777731122 8.716436915 8.703690313 8.802853827 9.02644727 9.356301589 187926292 alkB Organic Remediation Other Hydrocarbons Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 9.31654934 9.293430458 9.548154436 8.395824201 8.429164832 219668142 ppx Phosphorus Phosphorus utilization Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 7.423074186 7.172385819 7.508011481 6.868548289 7.585606829 90326590 pilin virulence pilin Photobacterium profundum 3TCK superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 9.002620896 8.963225595 9.058338409 8.148483184 8.278855967 8.27531776 8.144209108 7.868106299 8.11603556 7.906062069 7.889730135 8.287995307 134150731 obgE Stress Radiation stress Mycobacterium tuberculosis str. Haarlem superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 8.892468744 8.990316889 8.891750211 8.850997607 8.69677301 8.660763692 8.518796714 8.900321109 8.830916313 8.846732318 8.849737976 8.865857791 187250756 hly virulence hemolysin Elusimicrobium minutum Pei191 superkingdom:Bacteria;phylum:Elusimicrobia;class:Elusimicrobia;order:Elusimicrobiales;family:Elusimicrobiaceae;genus:Elusimicrobium;species:Elusimicrobium minutum; 8.753849188 8.891755119 8.880444166 8.08732002 8.138081192 8.258278579 8.300980945 7.826987789 8.356752045 8.330407044 8.091424508 8.452608578 94554111 CopA Metal Resistance Copper Deinococcus geothermalis DSM 11300 8.602598577 8.692418534 8.693399592 7.860593284 8.49421039 8.448579537 8.775549062 7.64024295 8.625689955 7.614128162 8.095971934 8.235274133 83647477 endochitinase Carbon cycling Carbon degradation Chitin Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 9.528379748 9.837369103 9.514950086 8.449986245 8.523609087 8.569506608 8.546789766 8.485874599 8.585679116 8.839758188 8.894617526 8.734218863 262081102 pstA Stress Phosphate limitation Haliangium ochraceum DSM 14365 8.426953455 8.294845757 8.063737944 8.190583258 8.223765149 8.026447809 8.144526392 8.066727775 8.250902302 8.063328311 8.051320991 8.042914159 158316311 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.259285396 8.405015438 8.508679559 8.45710979 8.303279303 8.411534529 8.648617868 8.71581136 8.611476086 8.904944795 8.980483718 8.7022374 150376214 Catechol Organic Remediation Aromatics Other aromatics Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 8.520482474 8.812791833 8.750730426 8.939285944 8.856633624 8.683803018 8.874684553 8.868507639 8.602626574 8.976005918 8.499973479 8.191537298 198256358 pulA Carbon cycling Carbon degradation Starch Verrucomicrobiae bacterium DG1235 8.66964565 8.738161485 8.76948121 7.858319834 8.232172915 8.255737298 8.133056036 8.295603666 7.961177066 8.299769463 8.275250071 8.16024287 217506152 pstB Stress Phosphate limitation Thauera sp. MZ1T 8.993428937 9.041332801 9.189877927 8.438420957 8.052714853 8.321035634 8.636001991 8.303712854 8.689586815 8.438069909 8.409235265 8.653385243 3192699 tape_measure_protein Bacteria phage STRUCTURAL Enterobacteria phage N15 order:Caudovirales;family:Siphoviridae;genus:N15-like viruses; 9.896529468 9.791893899 9.702003171 9.863371676 9.863815882 9.587747821 10.1471503 9.992747128 10.10896553 10.21320838 10.17290138 10.09567416 119376262 Mex Antibiotic resistance transporter Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 9.091764655 8.811065917 9.217297011 8.95485247 8.317030631 8.214002972 7.991040005 8.110914981 8.545299609 8.136578163 8.378581109 8.493756834 157679006 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.463286721 8.404939846 8.339107809 7.942403151 7.857098859 7.967601335 7.273795077 7.400623604 8.364223474 7.692884395 7.578965596 7.973127894 229610701 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.448571551 8.545581294 8.497939309 8.342445584 8.380987482 8.804570058 8.84474215 8.544515571 8.446360098 8.815901894 8.855685186 8.97401953 126347484 dehH Organic Remediation Chlorinated solvents Streptomyces ambofaciens ATCC 23877 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ambofaciens; 8.188825294 8.222572312 8.129661193 7.7257868 7.566233243 7.542559479 8.038457073 7.689273733 8.203508632 7.643390336 7.28561664 7.48952791 162449502 pcpB Organic Remediation Herbicides related compound Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 9.633836388 9.466919139 9.174670111 9.223365075 9.112622139 8.721272274 8.860328547 9.249981186 8.921630976 9.133588408 9.159805825 9.11222968 189337151 nagK Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 7.934447116 8.141838555 7.945848715 8.026954966 8.670976107 8.319998604 8.430774547 8.017398521 187719057 phn Organic Remediation Herbicides related compound Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8.912342491 8.832697398 9.216161105 9.092557449 8.964289429 8.772522149 9.150075162 8.748434366 8.840325279 8.949108657 8.649732601 171909800 Catechol Organic Remediation Aromatics Other aromatics Verrucomicrobium spinosum DSM 4136 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Verrucomicrobium;species:Verrucomicrobium spinosum; 8.78611998 8.664950506 8.860366161 8.661711476 8.521218136 8.506713619 8.2963234 8.636681003 8.294562902 8.482379035 8.659836937 8.461296666 258557141 sigma_70 Stress Sigma factors Nakamurella multipartita DSM 44233 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 8.180158818 8.280121419 8.501782423 8.440401883 8.116195182 8.034976145 8.687572361 8.369519086 8.38253454 8.348006964 8.351189424 157961979 pimF Organic Remediation Aromatics Aromatic carboxylic acid Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 7.484291744 7.903144372 7.532848374 7.685746483 7.778116041 8.008252985 7.574028304 7.813774786 7.679855808 114540602 AceB Carbon cycling Carbon degradation others Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.983646721 9.073547233 8.705280735 8.39416511 8.68864253 9.178291361 9.52785688 9.120628919 9.006874244 8.805193438 9.245635662 8.980099036 84391897 bclA Organic Remediation Aromatics Aromatic carboxylic acid Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 8.938156336 8.881031093 8.805279745 8.607314683 8.373809256 8.175268689 8.1820801 8.624582447 8.457281446 8.252693588 8.321684015 90903265 aoxB Metal Resistance Arsenic uncultured bacterium superkingdom:Bacteria; 8.185717529 7.932948831 8.107269397 7.938602884 7.512955837 7.59561118 7.926042275 7.930407679 7.856464592 7.590308415 7.689493118 158331970 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 8.515710018 8.488861866 8.536048581 8.808684015 8.732249862 8.493891922 8.460663304 8.711555666 8.747390161 8.812755993 8.812828744 8.706095271 163731843 obgE Stress Radiation stress Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 8.325641553 8.300945427 8.262461169 7.779056199 7.721893842 7.682268519 7.743186638 7.750188046 7.503342465 7.830596194 224037824 phenol_oxidase Carbon cycling Carbon degradation Lignin Ganoderma lucidum superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Ganodermataceae;genus:Ganoderma; 8.340345233 8.075537988 9.29904154 8.161076097 8.08689638 8.257334273 8.056117748 8.334779689 8.359460637 8.400687204 8.346170963 8.148007078 167031138 cytochrome Energy process Energy process Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 10.06480496 10.06096493 9.881008085 9.828475322 10.18415838 10.0774859 10.62373642 10.40617403 10.15436381 10.24309646 10.62118541 10.49991125 118174473 CDH Carbon cycling Carbon degradation Cellulose Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.400404144 8.748240431 8.599659133 7.78613259 8.229227672 8.096777603 8.444636404 8.250592159 8.401507978 8.157343395 8.09229617 7.98370159 161391954 dmsA Organic Remediation Others Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 9.673869465 9.455269889 9.561336779 8.954468397 8.880425927 8.77226465 9.022234447 8.794253245 9.000521815 9.119776938 9.064248077 8.975396127 227498553 phoA Stress Phosphate limitation Acidaminococcus sp. D21 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Acidaminococcus; 8.114499149 8.390239302 7.496961104 7.543256718 7.506734074 6.975330903 7.557143573 7.10665359 7.087367636 7.446827941 219851146 pstC Stress Phosphate limitation Candidatus Methanosphaerula palustris E1-9c 8.106364115 7.859088476 7.391716291 7.25915531 7.528729295 7.372300482 7.028943153 7.111378631 7.163469949 7.55538418 78518136 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.854114635 9.008546263 8.803850079 8.203068952 7.951918598 8.42704246 8.86813077 8.389165374 8.455247633 8.356972631 8.575269824 8.232939118 247542706 cda Carbon cycling Carbon degradation Starch Paenibacillus sp. JDR-2 9.177564714 9.242600385 8.837109853 8.22186497 8.490029622 8.237145106 39649727 nhh Organic Remediation Aromatics Nitoaromatics Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.735502514 9.775175109 9.737822138 9.205075551 9.184738355 9.515969912 9.440608081 9.070978622 9.554593626 9.451425741 9.521952401 9.096422493 149375484 bphA Organic Remediation Aromatics Polycyclic aromatics Marinobacter algicola DG893 8.832178479 8.94960357 8.531808456 8.262723355 8.097524031 7.999293618 8.042046979 8.059608296 7.76277155 7.884419306 8.025065429 8.181114598 211905315 xylA Carbon cycling Carbon degradation Hemicellulose Burkholderia sacchari superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.322106777 8.406458095 7.563739166 7.594815204 8.277001383 7.805005586 7.676338521 7.732670283 7.651381817 86145024 catB Organic Remediation Aromatics BTEX and related aromatics Vibrio sp. MED222 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.323123473 8.192543586 8.576582912 8.205061721 8.091227906 7.763763719 7.671189209 7.652968196 8.320214242 8.027088357 7.629446545 7.790315708 83645112 B_lactamase_A Antibiotic resistance Beta-lactamases Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 8.485874128 8.077174959 8.399708476 7.625562591 7.662813157 8.101970618 8.081233249 7.802277875 7.843889524 7.923553557 7.733753342 260623096 pcc Carbon cycling Carbon fixation Bacteroides finegoldii DSM 17565 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides finegoldii; 7.108197422 7.192303166 146303275 copper_resistance_gene Bioleaching Metal Resistance Metallosphaera sedula DSM 5348 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Metallosphaera;species:Metallosphaera sedula; 8.771539228 8.769380577 9.105147754 8.217113918 8.198413576 8.079220329 7.939483916 7.73392748 8.12809675 7.723465559 7.976642221 8.454640441 214037866 mdlC Organic Remediation Aromatics Aromatic carboxylic acid marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.476884677 8.547811744 8.732087253 8.120186981 7.7515262 8.028226116 7.849727745 7.57505808 7.963260565 7.822681363 7.786933088 7.937691722 169175729 ara Carbon cycling Carbon degradation Hemicellulose Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 8.308814222 8.194607372 8.065605663 7.90821373 7.757821846 7.467008724 7.801005828 8.329239493 8.090405371 8.043879851 7.749473917 8.119437458 119767497 hly virulence hemolysin Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 9.40701911 9.660756403 9.277102498 8.525362346 8.071578299 8.707276186 8.614072165 8.868590118 8.395832529 190700340 MFS_antibiotic Antibiotic resistance transporter Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.066055176 8.326108151 7.768203604 7.7980621 8.267820901 8.326223877 8.154867729 8.189406692 7.959406909 7.954060805 7.715429426 77544522 pstC Stress Phosphate limitation Pelobacter carbinolicus DSM 2380 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter carbinolicus; 9.385209555 9.243675992 9.411859485 8.656108127 8.491001271 8.430431627 8.426138166 8.225061342 8.463726452 8.499816712 8.384125344 8.713919707 126635911 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.621306663 8.767467556 8.992697513 8.191717648 8.190720125 8.224002846 8.189767375 8.197962703 8.038139103 8.163308533 8.304700977 8.447510064 163857116 bphA Organic Remediation Aromatics Polycyclic aromatics Bordetella petrii DSM 12804 9.348494553 9.230595776 9.186085973 8.662019495 8.162546345 7.955330667 8.028416545 7.962949138 8.64325524 7.923195418 8.274182345 8.238001373 218509841 nmoA Organic Remediation Aromatics Nitoaromatics Rhizobium etli Brasil 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 9.034413872 9.196186384 8.669325716 8.494346092 8.776841857 9.01588746 8.981778196 8.738191955 9.15465845 8.795500795 8.767015318 8.435832353 197085806 cytochrome Energy process Energy process Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 7.356838656 7.572482691 7.67480504 7.367054313 7.288741073 7.851350775 7.458603759 7.527735414 7.473801236 108799771 ureC Nitrogen Ammonification Mycobacterium sp. MCS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 9.166844164 9.262777474 9.1679882 8.68757735 8.234899766 8.943715287 9.099815592 8.782322845 9.34862319 9.068504859 9.32482736 9.001722283 164451705 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 9.765990417 9.950782938 10.04947477 9.046649446 9.440354188 9.415986139 8.870175905 9.146353762 9.470816899 9.120603573 9.302796828 9.254378139 164639413 phenol_oxidase Carbon cycling Carbon degradation Lignin Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 7.181040913 7.245329155 7.622546562 7.232557089 117984846 vanA Carbon cycling Carbon degradation Others Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.486220295 8.508321167 8.274238965 8.491234759 9.060824516 8.996340039 8.504637953 8.701333508 8.827985955 8.840906262 251773651 obgE Stress Radiation stress Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.649451567 8.437747304 8.502662831 7.900659774 7.888431 7.859069154 7.802590354 7.609940117 7.59077695 7.553824332 8.046649428 146296623 pstC Stress Phosphate limitation Caldicellulosiruptor saccharolyticus DSM 8903 8.05034979 8.159240189 145571612 atzB Organic Remediation Herbicides related compound Pseudomonas stutzeri A1501 8.638531879 8.677242791 8.64964185 8.299434772 8.372964374 8.294937492 8.52323008 7.899164168 8.653946978 8.276758582 8.164349298 7.988564203 154309125 nagG Organic Remediation Aromatics Aromatic carboxylic acid Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 8.252425673 8.088567251 7.461706631 7.553400551 6.891672054 7.206782513 154245186 sigma_70 Stress Sigma factors Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 9.031859344 8.885332642 9.178484233 8.818111132 8.648927078 8.495859975 8.548702727 8.414227714 8.287616745 8.564888385 8.460417634 8.656301819 196257957 fnr Stress Oxygen stress Cyanothece sp. PCC 7822 8.113140025 8.516775305 7.584678389 7.577072363 7.226996636 7.154037481 7.402356333 269215371 sigma_70 Stress Sigma factors Slackia exigua ATCC 700122 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Slackia;species:Slackia exigua; 8.173244605 8.152606746 8.283939888 8.176483948 7.808335601 7.542839919 7.4927078 7.72907393 8.149273245 7.675797018 7.621145348 7.580154995 87199837 chnB Organic Remediation Other Hydrocarbons Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 9.459166158 9.538616991 9.026837248 8.526926475 9.102622694 8.974460548 9.272219621 8.416362834 9.451043976 8.573142089 8.782525961 8.523703292 169759007 amyA Carbon cycling Carbon degradation Starch Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.353413832 8.384642632 8.914867567 8.112262641 7.96822802 8.265373471 7.741018397 8.498033808 7.46018218 7.341569588 7.551280619 145701515 cytochrome_c Bioleaching Electron transport Metallosphaera sedula DSM 5348 8.130794064 8.078391077 8.660918598 8.457102565 8.562302766 8.071282388 8.293075058 8.342746137 8.426009894 8.409468262 7.782432345 152966084 linB Organic Remediation Pesticides related compound Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 9.625108276 9.724051661 9.713712844 9.166995702 9.045320282 9.103637097 8.935460328 9.182685497 8.88294289 9.23059519 9.202767224 9.468591449 88866204 pcaG Organic Remediation Aromatics Other aromatics Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 8.184550994 8.239313576 8.35030704 8.206375161 8.249187348 8.440212329 8.358472799 8.619758572 8.522568254 8.57137352 8.531858566 121997927 todF Organic Remediation Others Halorhodospira halophila SL1 8.66216073 8.741314655 8.792088061 9.131835424 9.062534203 8.587116545 8.938506093 8.809940506 9.048286237 8.745228677 8.807930579 119957016 ArsC Metal Resistance Arsenic Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.843087032 9.125820902 9.1788674 8.745747335 8.861614893 8.687477813 8.590050616 8.88148499 8.700664317 8.658737497 8.684650997 229473039 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 9.19287883 9.338148257 9.232060462 9.027415335 9.319141565 9.26465993 9.713248059 9.508784815 9.363159997 9.695398217 9.780390711 9.868471214 114764201 sigma_32 Stress Sigma factors Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 9.133595916 9.054937076 9.10820401 8.892143413 8.848224901 8.428895934 8.809753648 9.029209042 8.747654747 9.039827483 8.976479599 8.845877916 209516720 phtA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.404243462 8.392729137 8.553657798 7.990133812 7.950200749 8.061991926 8.12704439 8.428732347 8.041079666 8.18994801 8.073474368 8.164884955 213876490 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium; 8.213238839 8.256042408 7.808091134 7.621837613 8.034753865 8.331226478 8.445174649 8.699508286 8.543492465 8.383268948 46307904 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.376817086 8.215937197 8.246997487 8.223613418 7.753976293 7.850523104 7.839122024 8.160290876 7.963664337 8.134190916 7.794336101 260430276 pstB Stress Phosphate limitation Citreicella sp. SE45 9.641459592 9.469534716 9.539037589 9.073499073 9.169557387 9.093966257 8.887800574 9.18215452 8.944786292 9.175755725 9.348248241 9.493861198 197210201 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 10.04800164 9.649926532 9.524383083 10.14227399 9.899553179 9.678650023 258595119 obgE Stress Radiation stress Desulfurivibrio alkaliphilus AHT2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfurivibrio;species:Desulfurivibrio alkaliphilus; 8.096239757 8.23902804 8.054737674 7.765153651 8.351156917 8.017092543 7.840681653 8.026239214 8.190271885 8.055859934 8.168642762 110816991 katE Stress Oxygen stress Rhodococcus jostii RHA1 9.206254964 9.099774698 8.984617188 9.095061651 9.180386231 9.199518179 9.501969432 8.824370468 9.373138519 9.059048371 9.031216652 9.028223055 159140622 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.226736455 8.077186451 8.496146423 8.394744697 8.202976216 8.105539782 8.347694096 8.2978617 8.47265603 8.288613259 8.458238968 7.992636249 206688153 rd Organic Remediation Chlorinated solvents Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.322260323 8.419431301 8.45546351 8.171686755 8.370314484 8.276146366 8.539410309 8.645256901 8.540116367 8.697035955 8.788567112 88865992 vanA Carbon cycling Carbon degradation Others Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 9.457077009 9.249449394 9.529453207 9.189258167 9.079996093 8.893227173 9.377249381 9.010011471 9.150014604 9.24709246 9.551028652 9.045342056 56696937 bclA Organic Remediation Aromatics Aromatic carboxylic acid Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 8.502208601 8.051577702 8.247712887 7.61889937 7.806827624 7.991599225 8.014217248 8.004152369 7.937117618 7.613779547 119818736 CopA Metal Resistance Copper Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 8.19497933 8.125747467 8.099030757 7.67487019 8.029643375 8.192864784 8.226611788 8.53563894 8.475833733 8.280014519 114563679 cytochrome Energy process Energy process Shewanella frigidimarina NCIMB 400 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella frigidimarina; 8.26565166 8.158639952 8.453073926 7.502903047 7.429733488 7.501744071 6.798995617 6.958590808 7.345122367 7.043066255 7.479731307 109452320 gyrB other category gyrB Actinobacillus ureae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus; 8.29123383 8.336377543 8.358659858 7.773994473 7.672530509 7.882285961 7.747466395 7.33552864 7.933607111 7.948291631 7.821708117 218462569 ChrA Metal Resistance Chromium Rhizobium etli Kim 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.336162151 8.33507326 7.984583306 7.908053444 7.72530759 8.023345493 7.954855603 7.80186268 8.296997617 8.284922819 8.230959583 8.251911991 24214559 katE Stress Oxygen stress Leptospira interrogans serovar Lai str. 56601 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira interrogans; 8.315839956 7.808619295 84391670 AceB Carbon cycling Carbon degradation others Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 9.379160737 9.070124911 9.210647451 8.560597916 8.38413474 8.21262138 255301072 obgE Stress Radiation stress Campylobacter showae RM3277 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter showae; 10.07044664 9.969996747 10.1266324 9.841403441 9.768186556 9.583510654 9.753277194 9.890784496 9.431030249 9.776497439 9.900027756 9.64283902 254450771 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 8.015809379 8.215014436 7.803902524 7.829140475 7.784081937 7.838564919 7.825274462 8.170451324 7.973049414 8.022668567 7.769044034 119817916 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Pseudomonas putida W619 8.208508967 8.292480013 7.537319487 7.558043909 7.665346626 7.673463635 7.340892636 8.026737273 7.623490521 7.648288664 7.755334921 257051994 pstA Stress Phosphate limitation Halorhabdus utahensis DSM 12940 9.667614999 9.577430515 9.151929702 10.00585953 9.670267513 9.265776484 9.853745461 9.642797097 9.471106634 9.625023115 9.572480639 9.625833967 86556084 nasA Nitrogen Assimilatory N reduction Synechococcus sp. JA-2-3B'a(2-13) superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.485120264 8.359995087 8.323660808 7.855717483 7.620506351 7.935467707 7.932822083 7.67176498 8.128820398 7.387736603 7.576925666 144898938 narI Stress Oxygen limitation Magnetospirillum gryphiswaldense MSR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 8.978313811 8.829587663 8.988278033 8.238104665 8.3890468 8.249342129 8.489193482 8.770764418 8.347765054 8.771024778 8.736385075 8.832426744 256035427 ureC Nitrogen Ammonification Chitinophaga pinensis DSM 2588 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 9.639573689 9.507351751 9.783120314 9.290930712 9.061100332 8.934474599 9.214559932 9.032010441 9.387956287 9.671508863 9.654428998 256779588 SMR_antibiotics Antibiotic resistance transporter Streptomyces hygroscopicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces hygroscopicus; 8.101290788 8.637863088 8.670310052 8.395579996 8.475133847 8.653132813 8.515118544 8.729071554 8.486380567 9.17377297 8.842230565 8.407850157 119671367 ahpC Stress Oxygen stress Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8.317586266 8.628646233 8.622779124 7.920144272 7.752518595 7.868181595 7.813112151 7.718725638 8.495655638 7.769770223 7.763856223 7.774839665 158425267 sigma_70 Stress Sigma factors Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 8.969341829 9.008513179 8.861758238 9.010918331 9.240376011 8.79376591 9.098439914 9.372824918 8.838085512 9.104580841 8.794690381 9.076310398 1946287 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas sp. superkingdom:Bacteria;phylum:Proteobacteria; 8.307227838 8.309855326 8.252944024 7.780237096 7.768352977 7.526648357 7.528219614 7.259898138 7.660895384 7.437626823 7.55798246 37548586 integrase_tyrosine Bacteria phage REPLICATION Enterobacteria phage PsP3 order:Caudovirales;family:Myoviridae;genus:P2-like viruses; 8.913240876 8.565713586 8.905747303 8.150049927 8.012305102 7.880727601 7.645715194 7.437569588 7.889283943 7.757223599 7.937022219 8.113604281 29610316 atzA Organic Remediation Herbicides related compound Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 9.511010395 9.386805109 9.687053449 9.125403038 9.110573255 8.938151546 8.977047808 9.151940091 8.996616444 9.060272888 8.991708733 9.315897874 217503048 narI Stress Oxygen limitation Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 7.516710888 7.630316322 7.309279629 7.810633007 7.535678036 7.25593764 7.702789225 221202065 iro virulence Burkholderia multivorans CGD2M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 9.561919393 9.158549582 9.31940064 9.152064428 9.047007262 8.800068737 9.009308116 9.692123531 9.057000434 9.410330414 9.097599131 9.356346322 148253529 exaA Organic Remediation Chlorinated solvents Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.562990501 8.547886432 8.864075202 8.535289647 8.451544973 8.154551537 8.601115919 8.871129462 8.478134925 8.456038985 8.490320181 221532626 vanA Carbon cycling Carbon degradation Others Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 8.334504841 8.259300596 8.487787804 7.522648437 7.429893028 7.79771755 7.452725219 7.341794746 7.854870033 7.502496069 7.634935468 7.878713231 83591568 B_lactamase_A Antibiotic resistance Beta-lactamases Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 9.539863044 9.297516589 9.325153747 8.639408544 8.697435639 8.677491069 8.800427869 9.078373653 8.897654801 8.827196224 9.009721901 8.918613756 119862462 sigma_24 Stress Sigma factors Psychromonas ingrahamii 37 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas;species:Psychromonas ingrahamii; 8.234151327 8.448399993 8.528230416 7.56369294 7.716824853 7.744376981 7.643878572 7.395127982 7.222074692 7.535571725 7.696377747 7.972228337 209547259 sigma_24 Stress Sigma factors Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.420503666 8.167813722 8.621308338 8.789650039 8.736697805 8.610802576 8.702451868 8.755340379 8.327304307 8.690237677 8.301958829 8.193805526 221082282 gyrB other category gyrB Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 9.003538839 9.365832474 9.319293374 9.488038115 9.56679998 9.460672522 9.529295541 9.694109474 9.362205198 9.641500301 9.582161178 9.303494196 120587575 AceB Carbon cycling Carbon degradation others Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 9.460006146 9.522130043 9.498797174 8.819532088 8.682771817 8.629262798 8.746728761 8.4510022 8.76930971 8.540646584 8.568388442 8.840829928 212544850 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 8.531696507 8.488065696 8.752388008 8.037545528 8.124249009 7.844910975 7.447243265 7.462080446 7.682200678 7.581081545 7.669119957 8.082009076 114764524 phn Organic Remediation Herbicides related compound Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 9.094662864 9.020617888 9.075104298 8.576903913 8.488155809 8.314206441 8.481528295 8.832864749 8.604972552 8.577743838 8.542969952 8.85540881 148556298 vanA Carbon cycling Carbon degradation Others Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 9.426073341 9.320103893 9.769216082 8.900336396 8.860412831 8.896087471 9.19612968 8.831716707 9.170551578 8.769826104 8.716388682 8.915865651 85670288 sigma_32 Stress Sigma factors Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 9.293492968 9.159380004 9.270976053 9.098586779 8.985247099 9.068067576 8.823454939 9.053802429 8.837116613 8.945150734 9.100863688 9.103424216 157082009 katE Stress Oxygen stress Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 8.645334204 8.79034531 8.80131378 8.102771766 8.064486683 8.036785702 8.056249495 7.575947699 8.168036751 7.941998884 7.721322066 8.052349999 145860192 PceA Organic Remediation Others Desulfitobacterium sp. CR1 8.441630188 8.100845116 8.157858644 8.289855795 8.346792258 8.226415338 8.183243525 8.140148134 8.164282328 8.01822534 8.039584622 89512984 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.044793451 8.110744694 8.268089458 7.733544816 7.472069211 7.53149458 7.501588753 7.451133916 7.640526905 7.406272494 7.418698755 7.491227171 85669610 sox Sulphur Sulphur oxidation Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.330506608 8.127953706 8.374426746 8.808295954 8.271000448 8.002692923 8.272520085 8.490368181 8.306814558 8.445513738 8.603964981 8.269415723 149921510 CopA Metal Resistance Copper Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 8.956265681 8.658700317 8.589634991 9.086651147 9.055128759 8.692550519 8.695476333 9.215861997 9.184503679 8.985588096 8.914507568 9.117917754 167363964 linB Organic Remediation Pesticides related compound Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 9.268638183 9.313019606 9.402764713 9.196846761 8.873651924 8.729377673 8.944150471 9.124690027 9.218697523 9.188812863 9.123741113 9.093457152 126627924 proV Stress Osmotic stress Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 8.274919532 8.271839881 8.272383974 8.485685303 8.69837626 8.453199998 8.5164642 8.750378748 8.705062605 8.848485801 8.731409418 8.695747479 194342142 ureC Nitrogen Ammonification Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 9.237708271 9.533629204 9.432513372 9.29261762 9.216844585 9.291655168 9.479671886 9.673497235 9.464805179 9.781603253 9.583914872 9.547694664 118470463 gyrB other category gyrB Mycobacterium smegmatis str. MC2 155 10.24585933 9.916465388 9.730137947 10.20217785 9.954795135 10.09884315 10.1212258 9.950675218 9.651592575 9.751546716 9.91611271 9.650681783 117983924 nitA Organic Remediation Aromatics Other aromatics Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.660937402 9.028339605 8.628876864 9.488372275 9.37985937 9.250327554 9.794165366 8.985879014 9.507164018 9.394106573 9.282026943 158139520 pstB Stress Phosphate limitation Alkaliphilus oremlandii OhILAs 8.216497063 7.827851673 7.41051011 7.14671031 6.969101198 6.727447695 6.536875643 7.742491344 6.973493022 6.990113259 7.21924405 91682841 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 10.49888652 10.55465827 10.68415779 10.49944971 10.62918885 10.51917827 10.78272386 10.52873902 10.82566492 10.74390313 10.9342952 10.77742001 91684728 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 10.91930929 10.26458541 10.92288326 9.924560585 9.93644849 10.51336115 10.18071679 10.32202875 9.966074155 209874445 fnr Stress Oxygen stress Oligotropha carboxidovorans OM5 9.304607209 8.90282955 9.453082621 9.322541052 8.941341707 8.922004516 9.050529305 9.093104176 8.885729395 9.019177491 9.270553439 8.959076045 71038277 SMR_antibiotics Antibiotic resistance transporter Psychrobacter arcticus 273-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter arcticus; 8.05743958 8.139142364 8.674329494 8.02169132 7.669084539 7.858663592 7.786478995 7.561491891 8.452216501 7.525331732 8.133273366 7.819062919 148262625 hydrogenase Energy process Energy process Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 8.47979045 8.121561315 8.141752478 8.375072853 8.298423335 7.998916665 8.600698909 8.107465071 8.416657721 8.456329916 8.183325792 254462386 sigma_32 Stress Sigma factors Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.165059148 8.206846224 7.75459013 7.888059349 7.69024356 8.53813311 8.009742842 8.506117876 8.225419065 54027692 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 8.551467935 8.852523754 9.338889329 7.956159355 7.88088618 8.20843298 8.07138957 8.14015047 8.505243427 8.18918087 8.325854384 8.251173658 218887684 cytochrome Energy process Energy process Desulfovibrio vulgaris str. 'Miyazaki F' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 8.240522926 8.004946235 8.209913047 7.589533896 7.788835198 7.73385526 7.778274837 7.873284003 7.757610956 7.796759372 7.984876294 7.62940493 113526712 nitA Organic Remediation Aromatics Other aromatics Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 9.157028141 9.125015472 9.224244399 8.763952745 8.789056508 8.567934625 8.692781233 8.94999746 8.970217193 9.01986673 8.909227384 9.010629889 160886456 ChrA Metal Resistance Chromium Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 8.660143832 8.858429905 8.909833317 9.207474874 8.671242647 8.769196948 9.208962529 9.11303152 9.037931645 9.1208616 8.899319407 8.886869653 225176843 ahpC Stress Oxygen stress Clostridium sp. M62/1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 8.764763349 8.755475354 9.015589686 7.727304426 8.020932883 8.090253232 7.936127873 7.763023999 7.838851975 7.70707584 8.196411652 46914805 pilin virulence pilin Photobacterium profundum SS9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 9.296052618 9.342281088 9.511095043 8.806913337 8.692449399 8.641718309 8.531789109 8.627362709 8.58586142 8.787553173 9.007449914 218662245 pcc Carbon cycling Carbon fixation Rhizobium etli IE4771 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 10.48129068 10.24290844 10.55343046 9.894449815 9.813890118 9.668603894 9.988930127 9.876492294 9.929237719 10.12939911 10.20541639 10.18822347 50122001 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pectobacterium atrosepticum SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 9.234391679 9.243813221 9.408478512 8.798896208 8.590534292 8.524006863 8.333075933 8.351168955 8.483462828 8.256209773 8.699021968 61658242 glucoamylase Carbon cycling Carbon degradation Starch Thermomyces lanuginosus superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;genus:Thermomyces; 8.259765539 8.185921933 8.543036847 8.398995429 8.050411711 8.267888828 8.187258584 8.49226857 7.959610856 7.935562274 8.138710619 53804554 cydA Stress Oxygen limitation Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 8.358802942 8.563364672 8.365768471 7.953222364 7.793898976 8.063170631 8.130054735 7.814134284 8.082240086 7.886428071 7.940359406 89896216 dmsA Organic Remediation Others Desulfitobacterium hafniense Y51 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 8.074855218 8.034611592 8.153073465 7.155995516 7.376960084 7.621394536 7.522126548 6.80376762 14023294 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 9.599915709 9.345804062 9.097350548 8.961415182 8.971275531 8.837108538 8.924947581 8.961148701 9.283960516 9.336657408 9.142358314 9.149324575 197294600 grpE Stress Heat shock Candidatus Phytoplasma australiense superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Acholeplasmatales;family:Acholeplasmataceae;genus:Candidatus Phytoplasma; 7.260094043 7.090603518 67154492 PobA Organic Remediation Aromatics Aromatic carboxylic acid Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 9.884602211 9.726193807 9.601759111 9.47698654 9.354290717 9.199455896 9.320883748 9.207070465 9.321736962 9.476549735 9.619422098 9.295444084 74058169 ChrA Metal Resistance Chromium Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 8.768246083 9.043019535 8.910624019 8.482412809 8.441070941 8.326839748 8.44175607 8.714017163 8.260270228 8.721409744 8.561736103 8.552139468 118170440 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.268693151 8.42383232 8.795228992 8.90346381 8.898212916 8.472837404 8.452469066 9.142669102 8.764617445 8.867436356 8.693132909 9.071423882 110285577 fnr Stress Oxygen stress Mesorhizobium sp. BNC1 8.502256656 8.634101191 8.36292339 7.878541376 8.307884635 8.612550105 8.580861762 8.336213616 8.765305796 8.148555792 8.543941045 8.541247988 150036084 sox Sulphur Sulphur oxidation Rhodothalassium salexigens superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodothalassium; 8.454599608 8.491756145 8.527169206 8.236071008 8.336501905 8.206679649 8.41692934 8.571472281 8.283109574 8.352361037 8.311276224 8.270077171 118472935 Catechol Organic Remediation Aromatics Other aromatics Mycobacterium smegmatis str. MC2 155 9.24964999 9.512585609 9.033982263 8.793216562 8.942592337 9.074541711 9.451523413 9.231217515 9.309339541 9.142249368 9.228404542 9.141186712 124268587 pilin virulence pilin Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 8.571828376 8.526940776 8.706902227 8.873472336 8.702329474 8.021721729 8.963461599 8.375112612 8.623605878 8.620041529 8.990335201 269785903 sigma_24 Stress Sigma factors Sphaerobacter thermophilus DSM 20745 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 8.592676121 8.439596376 8.584557963 7.924101533 7.999066829 7.958268967 8.00908816 8.1707255 8.057261726 8.278408878 8.010339995 8.261780798 91682765 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.616728464 8.536171882 8.537585496 8.272552817 8.189690069 8.149517177 8.435006106 8.053804441 8.246550527 8.035482674 7.920450407 8.031694521 156869730 ara Carbon cycling Carbon degradation Hemicellulose Clostridium leptum DSM 753 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 8.859702307 8.971534566 9.030917192 8.529947313 8.441131462 8.255970533 8.147892347 8.017637527 8.111358058 8.145139574 8.450348339 170774932 nagI Organic Remediation Aromatics Aromatic carboxylic acid Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 8.395404653 8.684173576 8.720952933 8.342997031 8.256097034 8.439524932 8.900664328 8.5503816 9.027319362 8.276252367 8.493596015 8.32327707 184195709 nitA Organic Remediation Aromatics Other aromatics Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 9.665763228 9.533927462 9.571965833 8.532222568 8.518149211 8.418225127 67633920 nifH Nitrogen Nitrogen fixation Lyngbya majuscula CCAP 1446/4 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Lyngbya;species:Lyngbya majuscula; 8.123680882 8.113839543 7.168153873 7.132287807 7.266788289 6.926652913 6.804930719 7.542411365 39650472 ArsC Metal Resistance Arsenic Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.433602234 8.665043752 8.655923212 8.138576333 7.900130319 8.473696354 8.761416766 8.207111164 8.631958131 7.960164176 8.23488052 8.005859104 145701790 antioxidant Bioleaching Metal Resistance Metallosphaera sedula DSM 5348 8.799801017 8.925147437 8.625418143 7.870767566 8.032544658 8.340781815 8.650624 8.204401216 8.891362412 8.402914933 8.659564844 8.430009021 212707708 AceA Carbon cycling Carbon degradation others Providencia rustigianii DSM 4541 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 8.536842585 8.647980318 8.700766318 8.306238566 8.150947963 7.976129295 7.978053565 7.829969419 7.850982308 8.125504213 8.174351929 237667699 pilin virulence pilin Clostridium butyricum E4 str. BoNT E BL5262 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium butyricum; 8.761002397 8.547431609 8.969106239 8.299062469 8.311309715 8.132916984 7.135426932 7.313962964 7.819837836 7.80610129 8.134155777 239834369 B_lactamase_C Antibiotic resistance Beta-lactamases Ochrobactrum intermedium LMG 3301 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 8.892799605 8.761600556 8.834989865 8.274669597 7.988855636 8.036626797 7.644514205 7.375773159 8.106267041 7.882589361 7.970552572 8.258967128 269955026 endochitinase Carbon cycling Carbon degradation Chitin Xylanimonas cellulosilytica DSM 15894 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Xylanimonas;species:Xylanimonas cellulosilytica; 9.092870779 9.043195239 8.90080734 9.057572266 8.53522097 8.474046493 9.116287918 8.96785139 8.877485229 8.725751568 8.797897744 3006039 phenol_oxidase Carbon cycling Carbon degradation Lignin Pleurotus sp. 'Florida' superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pleurotaceae;genus:Pleurotus;species:Pleurotus pulmonarius; 8.623673106 8.636718598 8.838729046 8.336480144 8.203318554 8.053434292 7.941862736 7.416965548 8.5299082 7.815050117 7.773939273 8.147042581 90335022 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 8.323775155 8.15226619 8.480566031 8.497615298 8.244739745 8.160244856 8.453716913 8.402283831 8.149311717 8.270575376 8.478770247 8.183208545 255924363 amyA Carbon cycling Carbon degradation Starch Actinosynnema mirum DSM 43827 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinosynnemataceae;genus:Actinosynnema;species:Actinosynnema mirum; 8.562236018 8.74576515 8.609373166 8.611067677 8.334000967 8.190583818 8.318055781 8.30672472 8.365198337 8.254442973 8.324757101 8.281251424 63259012 ZntA Metal Resistance Zinc Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 8.373750603 8.220429116 7.804439105 7.782766383 7.574409416 7.631141649 7.890677086 7.98329329 8.146434834 8.020977714 8.013890505 149360459 ureC Nitrogen Ammonification Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 8.859792004 9.355110176 8.958518887 8.659217619 9.758990966 9.721725951 9.320157933 9.851541865 9.251324699 9.056977262 9.171256846 146192464 SilA Metal Resistance Silver Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.703844458 9.223389237 9.037994012 9.178576286 9.197861963 9.13383279 9.296898617 9.683561204 9.403535222 9.817890627 9.388002239 9.317331633 198263613 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 8.976190608 8.795780668 8.850559285 8.596550661 8.395738003 121610096 glnA Stress Nitrogen limitation Verminephrobacter eiseniae EF01-2 10.36467913 10.40401161 10.14226752 10.38919833 10.67678742 10.54185771 10.29517561 10.81967869 10.4124553 10.74527153 10.52495201 10.35752694 83746974 vanA Carbon cycling Carbon degradation Others Ralstonia solanacearum UW551 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 7.872182983 7.507479022 7.634968413 8.196201641 7.793516196 8.105330988 7.346112319 7.587831451 7.327181927 118430564 lysin Bacteria phage LYSIS Streptococcus phage SMP order:Caudovirales; 9.02436089 8.978276413 9.111970282 8.52865179 8.212954108 8.290775523 7.998270473 8.004214501 8.27137351 8.188211174 8.178337129 8.580629722 217978609 katE Stress Oxygen stress Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 8.880448192 8.941633455 8.65033171 8.787549925 8.875130987 9.04204714 9.146574675 9.293130423 9.209651082 9.285472313 9.253347162 9.25786217 119958433 hly virulence hemolysin Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 9.124384656 8.893226759 9.106407073 8.505938974 8.453457496 8.509239516 8.467838833 8.324163715 8.208295786 8.413321648 8.206331474 8.610947098 119536102 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 10.93056593 10.63894853 10.71322292 10.14818894 10.12106078 10.02206179 10.55016847 10.17684542 10.51828465 10.34060188 10.6489343 10.36254251 94496873 ahpF Stress Oxygen stress Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.840973088 8.785092211 8.691121421 8.406909646 8.611716799 8.394505246 8.408999342 8.95421943 8.464168193 8.898265437 8.564946885 8.693346354 223492294 mer Metal Resistance Mercury Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 9.411410073 9.462683695 9.54610452 9.461531229 9.59193429 9.333391585 9.378843096 9.60146056 9.347520551 9.582299477 9.622373354 9.370349962 160934362 glnA Stress Nitrogen limitation Clostridium leptum DSM 753 8.15482293 8.12076127 7.452775892 7.67691642 7.822506716 7.633526378 7.461326238 8.105874829 7.322221854 7.276439585 24987055 Arylest Organic Remediation Aromatics Other aromatics Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 9.481643651 9.565801995 9.124453014 9.139368805 9.18754871 9.134407971 9.680560079 9.1668008 9.878414038 9.103952906 9.112587155 9.202744234 23492827 BADH Organic Remediation Aromatics Other aromatics Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 9.390984789 9.657100031 9.091208129 9.386399927 9.92047142 10.15657956 9.817015073 10.30282918 9.472257911 9.710777968 10.02903575 9.756477439 227438774 contractile_tail_sheath_protein Bacteria phage STRUCTURAL Enterobacteria phage RB51 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 8.674548471 8.182084638 8.151386058 8.377508114 8.928841292 8.623395632 8.322054871 9.139248059 8.293435589 8.803562723 8.862941463 9.103138015 88791530 sigma_70 Stress Sigma factors Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 8.759392425 8.735851143 8.982254666 8.842410973 8.743870938 8.667203249 8.403180346 8.490744361 8.541158531 8.342271485 8.568859953 84393620 nplT Carbon cycling Carbon degradation Starch Vibrio splendidus 12B01 8.915093578 8.921343433 8.637998208 8.62257777 8.800046659 8.628826417 8.38001563 8.561514466 8.821348219 8.783373271 8.742471889 8.662995272 254228682 oxyR Stress Oxygen stress Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.12527118 8.545587788 7.622147669 7.618869155 7.67734382 7.47700318 7.240784785 8.078689126 7.30940752 7.548237171 163740736 nhh Organic Remediation Aromatics Nitoaromatics Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 8.94775261 9.122008712 9.231963584 8.419418911 8.308167982 8.565148354 8.585771186 8.392718873 8.663647944 8.395053008 8.516391957 8.377897261 126654273 pcc Carbon cycling Carbon fixation Bacillus sp. B14905 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 8.376599013 8.327154563 8.372845943 8.092037259 7.797203249 7.865447622 7.426580712 7.0471519 7.554133098 7.489583121 7.906291365 148721356 cydB Stress Oxygen limitation Mycobacterium tuberculosis F11 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 9.006766868 8.856193918 9.121612887 8.350727418 8.392406774 8.199245567 8.379396003 8.854825851 8.37357076 8.705360998 8.697248924 8.730336329 115421694 bphF1 Organic Remediation Aromatics Polycyclic aromatics Bordetella avium 197N 8.0885993 7.999417087 8.078564375 8.163235095 8.187969786 8.502958961 8.454452754 8.109076978 125975243 endoglucanase Carbon cycling Carbon degradation Cellulose Clostridium thermocellum ATCC 27405 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 8.931703775 8.857382264 8.565081871 8.269999489 8.440993921 8.228796177 8.004312504 8.45129524 8.23045539 8.550845337 8.464106284 8.379304732 87311876 katE Stress Oxygen stress Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 9.135078227 9.215656678 9.330296094 8.444005248 8.453682014 8.466045684 8.297015815 8.179618912 8.315632707 8.339965395 8.67038273 86355887 endoglucanase Carbon cycling Carbon degradation Cellulose Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 9.032161331 8.874780165 8.306811467 9.138004726 9.219837166 9.006467295 8.555972486 9.333451472 8.627564277 9.006201265 8.883165749 9.281643301 124257971 gyrB other category gyrB Methylibium petroleiphilum PM1 8.430558937 8.737397377 8.696583103 8.676047597 8.613675733 8.495907599 8.473564306 8.475765701 8.54194704 8.431904996 8.644241575 8.139460049 226319867 pstB Stress Phosphate limitation Deinococcus deserti VCD115 8.705814437 8.528398356 8.291194685 7.133164361 8.095432069 8.319122011 7.18764749 8.239554725 7.819335017 7.745386994 187923310 SMR_antibiotics Antibiotic resistance transporter Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 9.075616075 9.196131554 8.677820114 9.23146373 9.267927117 9.595555983 8.810663141 9.653339515 8.717494079 9.208064065 9.679162472 9.049446305 166897670 bphB Organic Remediation Aromatics Polycyclic aromatics Dyella ginsengisoli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Dyella; 8.03556824 7.929629628 8.106708168 7.767550002 7.844065741 8.093239061 7.660061581 7.989199571 40217349 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Gordonia westfalica superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 8.436867362 8.378638366 8.091697033 8.753104477 8.257786698 8.661898943 8.645686249 8.515223162 8.677749767 8.316555513 8.105358064 211961617 ureC Nitrogen Ammonification Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 8.322058793 8.167919108 8.534047041 8.141116536 8.147529668 8.245135056 8.565183542 8.375998915 8.179927895 8.404262472 8.043382179 90954587 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9.112949043 8.835389628 9.019001733 8.413040637 8.321725965 8.26097306 8.225573406 8.251333408 8.352523812 8.479108226 8.32917931 8.625526064 124488241 narG Nitrogen Denitrification uncultured bacterium 8.972737051 8.964703768 9.01382155 8.528144744 8.557258903 8.599658446 8.9953429 8.945131945 8.742890111 8.811004378 9.094665568 8.751594671 158138859 narG Nitrogen Denitrification uncultured bacterium 10.21961456 10.28008019 10.2779003 9.515937525 9.150427308 9.149317625 77969155 vanA Carbon cycling Carbon degradation Others Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.338251153 8.739623032 8.576481851 8.910403238 9.119781008 8.941308761 8.886775172 9.404621833 8.917473264 9.459040772 9.245145769 9.264667086 66801871 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 8.190698499 8.363893434 8.481122107 8.14308608 8.131975781 8.08309186 8.28786886 8.79880152 8.416612626 8.8628478 8.846715842 8.775357678 227979549 pcc Carbon cycling Carbon fixation Tsukamurella paurometabola DSM 20162 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 8.85912474 8.906434415 8.837843463 8.262438682 8.437998695 8.721278468 9.175776623 8.105664003 8.940655513 8.568630007 8.585717963 8.34648435 89241914 rubisco Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.531844349 8.122313707 8.25929528 8.875123281 8.817717061 8.457508534 8.528956728 8.594897625 8.750409812 8.576873231 8.30455235 8.346642773 124515952 glycosyl_transferase_EPS Bioleaching EPS Leptospirillum sp. Group II UBA 8.714466273 8.687005488 8.814954909 8.067146549 7.962762522 8.030829913 7.53109497 7.537050696 7.944224274 7.8560273 8.084561465 146342798 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.373394288 7.334484669 7.386136296 7.155850564 7.247039526 7.580411568 7.175885675 7.38679831 154508903 glnA Stress Nitrogen limitation Actinomyces odontolyticus ATCC 17982 8.398129903 8.183783535 8.457028562 8.361534698 8.218231512 8.051870758 7.889750819 8.233986644 8.214562703 8.119385253 8.125762624 8.090541125 119964666 cbb Bioleaching Carbon fixation Sulfobacillus acidophilus superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Sulfobacillus; 9.813827679 9.940847873 9.874244145 8.633358376 8.754827336 8.546143453 8.466384277 8.661429439 8.777398685 8.896900408 8.956810088 8.692444929 187603790 SMR_antibiotics Antibiotic resistance transporter Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 8.697087092 8.665771988 8.599719908 8.530741156 8.315401887 7.941959687 8.332441719 8.268615097 8.400416449 8.20930101 8.1393637 8.099567839 149921726 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 9.397183804 9.03877732 9.349561272 8.659340449 8.627287171 8.463854901 8.755856842 9.089412473 8.805557334 9.002055846 8.931638027 9.152010157 170657632 fcbA Organic Remediation Aromatics Chlorinated aromatics Methylobacterium radiotolerans JCM 2831 9.058173313 9.184831941 9.212550667 8.561312356 8.214527947 8.558982261 8.518049885 8.103816467 8.460594693 8.238679007 8.328389431 8.657634361 193088111 pstB Stress Phosphate limitation Chloroherpeton thalassium ATCC 35110 8.163384748 8.237626085 8.0978974 8.239256898 8.545151295 8.936441777 8.420907317 8.286715397 8.057432251 8.312494897 7.873275059 220714768 gyrB other category gyrB Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.609126889 8.781786544 9.00675551 8.691553082 8.656602217 8.521632441 8.691185884 9.193106723 8.683628117 9.030344904 8.814249199 8.922812231 19909543 gyrB other category gyrB Caulobacter sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.888947128 9.006203857 9.079866864 8.448114838 8.231025804 8.182779827 8.205166782 8.316083209 8.219471421 8.227907951 8.056512723 8.602772202 212673966 pstB Stress Phosphate limitation Desulfovibrio piger ATCC 29098 8.331162968 8.129189416 8.268285727 8.284796782 7.951841433 7.910411435 8.467434436 8.323490916 8.262052825 8.211749327 7.901867747 120607239 silC Metal Resistance Silver Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 9.325786185 9.7191952 9.578152404 9.345466429 9.419603114 9.294657017 9.733053377 9.936790355 10.23514005 10.10870048 9.89290438 63257864 exaA Organic Remediation Chlorinated solvents Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 8.967994607 9.171859622 9.068352726 8.8484395 9.210480927 9.054634376 8.847933945 9.280460195 9.286026741 9.201296628 9.332880989 8.922541073 154000010 pstC Stress Phosphate limitation Candidatus Methanoregula boonei 6A8 8.059887413 7.778641802 8.181862417 7.21832684 7.185392469 7.367716925 7.139589529 6.986597893 7.654160013 7.26041279 7.41709814 117926324 nreB Metal Resistance Nickel Magnetococcus sp. MC-1 superkingdom:Bacteria;phylum:Proteobacteria;genus:Magnetococcus; 9.019298624 8.978174152 8.322739368 9.635452641 9.600437028 9.222477288 9.651162844 9.554402211 8.920536808 9.450251052 9.181376922 9.065864465 258404443 hrcA Stress Heat shock Desulfohalobium retbaense DSM 5692 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium;species:Desulfohalobium retbaense; 8.912996411 8.820808656 8.875602127 8.082331332 9.056205589 9.287000122 8.74665927 9.305029634 8.780313695 8.763177207 8.823877488 113733023 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 10.03101018 9.916100163 9.766644132 9.706463543 9.649168558 9.544058907 9.437767012 9.833823997 9.698296225 9.632317174 9.612061841 9.55075339 62468068 bco Organic Remediation Aromatics Aromatic carboxylic acid uncultured bacterium superkingdom:Bacteria; 8.917016934 9.005076208 9.131221434 8.596484442 8.502161988 8.438373361 8.442848118 8.480097212 8.542489844 8.564665704 8.621159253 8.760601422 114765095 fnr Stress Oxygen stress Roseovarius sp. HTCC2601 9.141180206 8.77335261 9.259642547 8.885655554 8.732888251 8.320373123 8.563676091 8.797790406 8.700969483 8.592475909 8.714609298 8.746945334 83591942 phoB Stress Phosphate limitation Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 9.027740495 8.828603363 9.03504939 8.247055772 8.157642001 8.055690217 8.206725058 8.209578967 8.508621792 8.159339137 8.070836863 8.351896758 15841131 fnr Stress Oxygen stress Mycobacterium tuberculosis CDC1551 8.885216379 9.130270303 8.995978913 8.598633595 8.56739943 8.362955433 8.140475381 8.0016022 8.303594456 8.177027797 8.417941875 154162182 ChrA Metal Resistance Chromium Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 9.238863789 9.342082696 9.044933515 9.141101877 9.204618838 9.073137063 9.619333342 9.258380394 9.096453477 9.15010482 9.45398925 9.261146266 209516075 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.807384512 8.754335356 8.890331139 8.377610139 8.00693034 8.31722268 8.09891831 8.118660788 8.404105787 8.25001409 8.185776136 8.544259094 87281334 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.572769879 8.566803995 8.752893529 8.873411082 8.888675571 8.45082213 9.102545662 8.475950521 8.955747386 8.754789947 8.96636857 21673032 clpC Stress Protein stress Chlorobium tepidum TLS superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 8.801543359 8.436883719 8.338535898 8.14704005 8.376504359 8.456941319 8.281158583 8.356576046 8.573812597 8.461114634 8.375485935 8.344576807 177839101 exaA Organic Remediation Chlorinated solvents Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 9.278418347 9.154474619 9.03532949 8.759236894 8.805370191 8.632493907 8.537107727 8.85922085 8.830599067 8.845142268 8.967599223 8.952063755 78355510 fnr Stress Oxygen stress Desulfovibrio desulfuricans subsp. desulfuricans str. G20 9.465927458 9.218733428 9.408881049 8.459682504 8.444401387 8.444145343 8.256875805 8.038156855 8.425979399 8.35745359 8.402514513 8.587645427 219939246 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.475222803 8.815583222 8.745327552 8.908923878 8.873670586 8.53918197 8.707954791 9.427923896 8.883061708 8.934611696 8.743105878 9.088564635 160899130 alkH Organic Remediation Other Hydrocarbons Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.766555446 8.915993422 8.758304089 8.048328019 7.953434422 8.41841695 7.948251063 7.672253435 8.084052652 8.130089541 8.385959001 8.436433092 222544014 sox Sulphur Sulphur oxidation uncultured sulfur-oxidizing bacterium superkingdom:Bacteria; 7.926730737 7.994289255 8.071510111 7.279379745 7.304401526 7.12176463 7.059278094 6.882465197 7.532388608 6.958577923 7.259639676 146313079 gyrB other category gyrB Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 7.669066558 7.624210875 7.337574369 7.730360786 7.204872594 7.459130419 7.212742541 7.217444425 163793798 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 8.736417814 8.407808247 8.211806931 8.471271549 8.378816143 8.407478558 8.557566183 8.709406366 8.581905424 8.674415952 8.689734228 8.661795664 257068017 ahpC Stress Oxygen stress Brachybacterium faecium DSM 4810 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermabacteraceae;genus:Brachybacterium;species:Brachybacterium faecium; 8.9101756 8.825093576 8.941367311 8.875931198 8.659419344 8.479427499 8.842303768 9.274134769 8.931130735 9.034885528 8.605023361 8.986008016 198251292 ppx Phosphorus Phosphorus utilization Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 8.250814168 8.043635252 7.914653422 8.029186359 8.000782384 7.724001226 8.208848929 7.607803411 8.003449613 8.107120071 7.767982601 27381270 atzB Organic Remediation Herbicides related compound Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 9.56175272 9.677892558 9.85597716 8.770140392 8.871252035 8.806666105 8.951683233 8.74721198 8.842691357 8.672271942 9.255053991 48995725 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.942603569 9.182729581 9.267386505 8.796334892 8.63285427 8.597705588 8.408167826 8.409738955 8.451747509 8.410793709 8.396654941 8.691057724 126314905 pheA Organic Remediation Aromatics Other aromatics Pseudomonas putida GB-1 8.758716715 8.772337531 9.031859408 8.982778465 9.068726166 9.059814404 9.081760881 9.125238345 8.822147208 9.302911463 9.137887146 8.806865455 159037864 TerC Metal Resistance Tellurium Salinispora arenicola CNS-205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 8.867119113 8.689385823 8.521098668 8.955231074 8.700252517 8.446820056 9.038148267 8.825565502 8.665831686 8.622909368 8.314407348 258521123 pstA Stress Phosphate limitation Corynebacterium genitalium ATCC 33030 7.321457243 7.464805348 7.3684737 7.223963774 7.29893576 7.765240239 7.460003903 7.467394271 88812406 sigma_38 Stress Sigma factors Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 9.173030507 9.288559315 9.26850013 8.647133102 8.8063748 8.85021711 9.069876122 8.636822028 9.066151024 8.791692544 8.762025182 55231008 pstB Stress Phosphate limitation Haloarcula marismortui ATCC 43049 8.895491323 9.218054502 8.506050794 8.955266769 8.663725113 9.023536113 9.12006624 222544016 sox Sulphur Sulphur oxidation uncultured sulfur-oxidizing bacterium superkingdom:Bacteria; 8.813185834 8.683801871 8.682774678 8.75830315 8.552691214 8.27317585 8.64455375 8.658837673 8.472123393 8.565921566 8.731721908 8.245585827 126360302 tomA Organic Remediation Aromatics BTEX and related aromatics Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 9.235454788 9.389954764 8.875942192 9.525714883 9.513318338 9.242238037 9.639517979 9.562150991 9.272926041 9.43617253 9.745159359 9.192630362 222148431 TerC Metal Resistance Tellurium Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 9.693234857 9.603404765 9.346016597 9.530798323 9.346541155 9.354403913 9.631091506 9.536461373 9.344043965 9.368805541 9.459680612 9.347875788 89099005 pcc Carbon cycling Carbon fixation Bacillus sp. NRRL B-14911 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 9.799150242 9.634357131 9.755046423 8.843257107 9.011471704 8.958365756 8.923506135 9.322044365 8.77740525 9.451711239 9.385805122 9.226499216 220919901 Catechol Organic Remediation Aromatics Other aromatics Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 8.768264531 8.534267383 8.716698071 8.551937065 8.676627848 8.589284229 8.567580467 8.419077405 8.582896832 8.468459557 8.642974741 8.487263323 55581748 CopA Metal Resistance Copper Serratia marcescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 7.697047241 7.782080702 7.872264835 8.200373927 7.536371089 8.090405994 145304502 pimF Organic Remediation Aromatics Aromatic carboxylic acid Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 9.108273242 9.598247564 8.710042139 8.827422745 8.446418579 8.336389219 8.567465144 167661234 bco Organic Remediation Aromatics Aromatic carboxylic acid Clostridium scindens ATCC 35704 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium scindens; 9.375867491 8.976058368 8.969961616 9.081844275 8.757263862 8.495062513 9.114366301 9.193365562 8.82484629 8.438450099 198262459 czcA Metal Resistance "Cadmium,Cobalt,Zinc" gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.409273796 8.603001797 8.508979039 8.411105394 8.447221384 8.437647193 8.802787162 8.353195755 8.741064807 8.77899775 8.75157545 8.845833538 148260117 NADH_quinone_oxidoreductase Bioleaching Electron transport Acidiphilium cryptum JF-5 8.521578367 8.543372179 8.12698667 8.106965878 8.386222908 7.66524969 8.026712048 8.312808346 7.814001228 8.330826912 8.016348601 262275340 amyA Carbon cycling Carbon degradation Starch Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;species:Grimontia hollisae; 8.472117898 8.323249492 8.769404281 8.014147582 7.991049397 7.917907776 7.762000026 7.638795251 7.975978947 7.659463726 7.636439924 8.042680701 225159775 katE Stress Oxygen stress Clostridium hylemonae DSM 15053 8.249638672 8.495650558 8.766907502 8.447657332 8.508766633 8.167080021 8.842562728 8.63773728 8.246451474 8.196279736 13872675 alkB Organic Remediation Other Hydrocarbons Prauserella rugosa superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Prauserella; 9.443643336 9.393544686 9.296407179 8.921275479 9.316264169 9.095633735 9.156396087 9.555719081 9.202592698 9.451337732 9.260858968 9.38689462 109290314 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.475181631 8.238733554 8.32716847 8.473260354 8.557643328 8.424328355 8.407996604 8.725229881 8.437134763 8.439999765 8.435670664 8.441305956 139003150 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.34483928 8.443735226 8.442045157 7.674787836 7.944820917 7.871153988 7.882054687 8.042402145 8.295698648 8.261526795 8.014516708 8.141590843 223954281 mannanase Carbon cycling Carbon degradation Hemicellulose Pantoea agglomerans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 8.222658577 8.188619031 7.609187254 7.685301702 7.571297847 7.36974059 7.69147043 7.993134066 7.747248752 7.445735449 7.72821326 229610707 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9.484810866 9.7750714 9.560005978 9.617591058 9.899391894 9.814145561 10.06748293 10.22550259 9.943477714 10.36710329 10.346376 10.16458013 50982462 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 8.321703664 8.188938064 8.413851186 8.175991545 8.334294219 8.127053783 8.198834831 8.286501889 8.405143955 8.369320172 8.260214421 8.210209489 27382460 sigma_70 Stress Sigma factors Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 9.582017193 8.851890597 8.21598534 9.332266873 9.226387795 9.202271531 9.35028563 9.403511094 8.845981206 9.23459771 8.89395667 9.001671822 149145362 ahpC Stress Oxygen stress Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.827187553 8.993410455 8.860723132 8.493291005 8.780544769 8.766265909 8.659921594 8.932123772 8.719627112 8.801525996 8.724600232 8.79960111 164419770 amyA Carbon cycling Carbon degradation Starch Erwinia chrysanthemi superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya; 8.355132978 8.452632368 8.397499691 8.290604646 8.094919704 8.017685262 8.248777863 8.097882741 8.337580621 8.157326305 8.055708144 8.051485089 77380235 gyrB other category gyrB Pseudomonas fluorescens Pf0-1 8.496098752 8.528097661 8.327118561 8.157559481 8.265872799 8.282761492 8.203367573 8.532448083 8.279569229 8.387962943 8.356124251 8.300803559 89096032 AceB Carbon cycling Carbon degradation others Bacillus sp. NRRL B-14911 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 8.969261467 8.481781809 8.798076694 7.797525903 7.857397385 8.011253292 7.990264565 7.542500002 116626755 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 9.311106642 9.284508496 9.269989533 8.544776225 8.496482248 8.409768476 8.691982364 8.376745677 8.954362384 8.374415269 8.378586221 8.61018804 167463849 obgE Stress Radiation stress Paenibacillus larvae subsp. larvae BRL-230010 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus larvae; 8.449036516 8.253934673 8.017411541 8.357887873 8.062352352 7.669870006 7.74940659 8.121331344 8.261973732 7.854756053 7.719260796 7.76090553 75703119 fnr Stress Oxygen stress Anabaena variabilis ATCC 29413 9.24897603 9.103384859 9.19619394 8.709069041 8.605401718 8.532560165 8.178607016 8.289967049 8.281912371 8.113561217 8.562177046 184200152 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Kocuria rhizophila DC2201 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 9.047084835 8.244988988 8.250814365 8.819059042 8.848605339 8.801018954 8.947162872 8.804695487 8.483711161 8.792935851 8.913000289 224817263 hrcA Stress Heat shock Thioalkalivibrio sp. K90mix superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 8.875767469 8.945499883 8.943513273 8.914877758 8.908778873 8.840543889 8.967389274 9.472425975 8.868505134 9.562593584 9.160306597 9.435622974 196482278 tfdA Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 8.82327098 9.210697892 9.099633897 9.411888733 9.384284018 9.301863145 9.660430095 9.621999012 9.264733582 9.663284156 9.597198702 9.048543757 114543747 fnr Stress Oxygen stress Roseovarius sp. HTCC2601 9.063532338 9.085793681 8.876397323 8.541363383 8.56074087 8.679578126 8.138956998 8.630402596 8.546860657 8.516093484 8.627731518 63003137 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured soil bacterium 9.496470405 9.163040217 8.976418934 9.153180524 9.274314148 9.272634321 9.144758658 9.454818225 9.439527332 9.172837023 9.134602818 9.144337676 2983678 dmsA Organic Remediation Others Aquifex aeolicus VF5 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Aquifex;species:Aquifex aeolicus; 8.58847945 8.682977912 9.125445834 8.952494259 8.884962909 8.559699335 8.863269181 9.168343455 9.027718348 9.418184283 9.324690415 9.47529543 229452596 fnr Stress Oxygen stress Bacteroides sp. 2_2_4 8.554477051 8.251531702 7.747859044 7.869505563 8.051812272 7.890924612 7.705883875 7.423630329 7.91674495 94496756 type_III_secretion virulence secretion Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 9.085625405 9.215996023 9.263842677 9.12306293 8.871989436 8.952348985 8.522653625 8.724685854 8.424059513 8.95645257 9.167066993 8.504973192 169175749 cellobiase Carbon cycling Carbon degradation Cellulose Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 8.989246874 8.470036827 8.538054207 8.52770467 8.333663473 8.112008505 8.305023093 8.382757943 8.074038019 8.286169494 8.282439163 8.153108177 171277854 fnr Stress Oxygen stress Bifidobacterium dentium ATCC 27678 8.031972506 8.332264543 8.194073416 7.688641544 7.773326174 7.594535909 7.45809915 7.954629897 7.823864187 7.691994139 7.792595688 251775857 sigma_38 Stress Sigma factors Geobacter sp. M21 8.982412858 9.032323543 9.220286794 8.516628407 8.472069081 8.374730444 8.445028629 8.377942681 8.281396688 8.235998391 8.541182649 126729627 nagG Organic Remediation Aromatics Aromatic carboxylic acid Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 9.713760717 9.381691993 9.315301691 8.985606744 9.088356605 9.08614931 8.972157437 8.939364955 9.127372734 9.217147224 9.404530123 9.304350672 118718147 pmdAB Organic Remediation Aromatics Others Burkholderia multivorans ATCC 17616 8.544078229 8.483621172 8.818075328 8.697635606 8.525978329 8.293669756 8.807395941 8.656983485 8.589392513 8.472278945 8.160732838 211731802 endolysin_transglycosylase Bacteria phage LYSIS Bacteriophage APSE-3 9.29525514 9.277621488 8.996265079 8.905937864 8.986884796 9.052659956 8.867661444 8.797552711 9.109296712 9.160470319 9.420262661 9.253940442 218129579 TerD Metal Resistance Tellurium Bacteroides eggerthii DSM 20697 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides eggerthii; 8.30358816 8.369970945 8.449443532 7.918729536 7.804862211 7.798493249 7.472028126 7.540981773 7.9692861 7.664719872 7.82927061 7.968221475 74053707 cumA Organic Remediation Aromatics Other aromatics Pandoraea sp. JB1* superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Pandoraea; 8.921522092 8.989015219 8.72641515 8.230229967 8.410405661 8.689212378 9.132303904 8.395093624 9.047822252 8.571610999 8.772672615 8.596848997 66043936 atzB Organic Remediation Herbicides related compound Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 8.134077066 8.22189172 8.302884086 7.687801163 7.848256586 7.895287486 7.990425412 7.566911257 7.955724747 7.824473095 8.207986212 13423943 4HBH Organic Remediation Aromatics BTEX and related aromatics Caulobacter crescentus CB15 8.992226728 8.712471561 8.725631875 8.777795483 8.78520963 8.695643076 8.828591541 9.045251121 9.124740069 9.078288897 9.125632071 9.124528415 146283645 dnaK Stress Heat shock Pseudomonas stutzeri A1501 8.217051491 8.253107923 8.161668022 7.915684617 8.09695391 8.077967494 7.793380548 8.418728473 8.203654689 8.015109509 7.992471653 7.905207326 226226990 clpC Stress Protein stress Gemmatimonas aurantiaca T-27 superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 8.743261874 8.857935061 8.959091771 8.1667186 8.18411436 8.192491716 8.121911279 8.082308188 8.301901264 8.413202672 8.13128845 8.326733254 152981870 ChrA Metal Resistance Chromium Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 8.694861905 8.670182468 8.455805652 9.226482694 8.885198863 8.512119196 9.119044219 9.11796453 8.977817953 9.054669974 9.065700804 8.377158055 169793402 narG Nitrogen Denitrification uncultured bacterium 8.800033112 8.952007854 8.896622122 8.253188729 8.32097369 8.284595496 8.298619487 7.983934025 8.562727983 8.222291409 8.184277854 8.179103767 212674326 sigma_70 Stress Sigma factors Desulfovibrio piger ATCC 29098 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio piger; 8.23351189 8.116641717 8.175369719 7.557362201 7.638992258 7.624369627 8.082196432 7.480901747 8.347744314 7.402534333 7.770681871 7.498405449 163262402 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 8.203021804 8.060162145 8.132501232 7.39720159 7.58622065 7.907179254 8.046829305 7.481638318 8.178535292 7.81017651 8.080625991 7.726107816 187924360 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 9.093820463 8.91164442 9.122194168 8.93874022 8.99358518 8.832804257 8.785748141 9.2818177 8.972081971 9.044947578 8.902869574 9.053610279 89895847 Ni_Fe_hydrogenase Energy process Energy process Desulfitobacterium hafniense Y51 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 9.064172218 9.050562906 8.706414701 8.567455237 8.737509418 9.081873842 9.004041654 9.280468761 8.573576868 8.257829132 8.415334879 170139222 MFS_antibiotic Antibiotic resistance transporter Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 8.555830102 8.799058311 9.260093962 9.187633089 9.176569031 8.838472216 9.009568665 9.541061329 8.754784439 9.371096901 9.127000783 9.316980456 254383244 ureC Nitrogen Ammonification Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 9.377111236 9.534411337 9.438480508 8.915542045 9.397069376 9.635495452 9.208713104 9.487889661 9.491964591 9.360957753 9.680081912 39650882 catB Organic Remediation Aromatics BTEX and related aromatics Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.267751266 8.465443662 8.151493103 8.079379105 7.832454249 7.706460532 8.244063556 8.039705758 7.832204283 7.928210354 7.970297583 126707025 ChrA Metal Resistance Chromium Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 8.47536275 8.277849329 7.789488494 8.399706519 8.109134854 7.871062786 8.12402107 7.999092595 8.555351993 8.046401487 77978654 B_lactamase_C Antibiotic resistance Beta-lactamases Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 8.520718544 8.620051069 8.761300769 8.492119504 8.217512903 8.273578956 7.969757297 8.040491005 8.347466872 8.095452913 8.153075361 8.311848554 13421197 linC Organic Remediation Pesticides related compound Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 8.498120735 8.757570864 7.894276995 8.366735904 8.862092946 7.62050609 8.055940516 7.973308813 8.572281673 33236406 obgE Stress Radiation stress Chlamydophila pneumoniae TW-183 superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Chlamydiaceae;genus:Chlamydophila;species:Chlamydophila pneumoniae; 8.078938824 8.267712257 7.523583309 7.714740993 7.963167122 7.274696478 7.629312237 8.042155638 7.557317928 8.235559061 7.642991853 148260031 UTP_glucose_1_phosphate_uridylyltransferase_EPS Bioleaching EPS Acidiphilium cryptum JF-5 7.915856017 8.080935253 7.298821161 7.535571219 7.413626629 7.458864502 7.154817397 7.94767332 7.097776507 7.443940652 7.764770944 133738122 MFS_antibiotic Antibiotic resistance transporter Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 9.006558769 8.659620699 9.09751217 8.679762405 8.530813106 8.454760706 8.833876915 9.123769337 8.936248446 9.207828786 9.23831064 9.255107795 194335014 phoA Stress Phosphate limitation Prosthecochloris aestuarii DSM 271 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Prosthecochloris;species:Prosthecochloris aestuarii; 8.165351003 8.154817233 7.590025593 7.786115674 7.689526501 7.191342397 7.178573074 7.27297829 7.369577598 152030503 pcc Carbon cycling Carbon fixation Anaeromyxobacter sp. Fw109-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 8.474687431 8.555468899 8.381330034 8.207596301 8.09017749 8.183686305 8.056043274 8.309137632 8.083286065 8.446102349 8.013500862 8.04350402 224579026 rubisco Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 9.676996107 9.560658006 9.407195413 9.072918683 8.974160322 8.514370875 9.069659928 9.215874032 9.030351051 9.126768699 9.127745466 9.00861275 224579309 rubisco Carbon cycling Carbon fixation gamma proteobacterium HRh1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.261092429 8.318274474 8.147396051 8.130086138 7.695594103 8.138667903 8.615942114 8.777825611 8.178462179 8.21641977 8.259422894 83317030 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.97147459 8.631000623 9.358466775 9.092196843 8.490749509 9.157691497 9.088068558 8.901947291 8.995346247 8.691895242 170744211 ChrA Metal Resistance Chromium Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 7.926170095 7.977871982 8.047459982 7.659014874 8.059628686 7.708686159 8.046771372 8.142071248 8.11048214 170774201 sox Sulphur Sulphur oxidation Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 9.194412268 9.145070813 9.117489144 8.930997203 9.041998276 8.602498721 8.626379476 8.339603524 8.890799688 8.892635297 9.041661515 8.751517194 158331716 atzD Organic Remediation Herbicides related compound Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 8.061794014 8.018933009 8.202399839 8.027647971 8.027102906 7.887541248 8.271641581 8.080363663 7.930906901 7.862480823 8.170338894 113897440 ChrA Metal Resistance Chromium Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 8.340043672 8.489000876 8.352240016 7.766280494 8.473662085 8.540990849 8.526572663 7.632229154 8.553275666 7.933423412 8.154796957 8.100661512 119459477 vanA Carbon cycling Carbon degradation Others marine gamma proteobacterium HTCC2080 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.880445443 8.753156704 8.965982862 8.194573279 8.12623985 8.06696513 7.942819109 8.019425597 8.10398657 8.158916097 8.264397308 146409401 exaA Organic Remediation Chlorinated solvents Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 10.45048373 10.58069756 10.50798192 10.28583627 10.36224911 10.3415449 10.59701059 10.81311917 10.63006743 10.96906318 10.95366608 10.95507264 119538332 obgE Stress Radiation stress Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.627003606 8.394766371 8.496188538 8.126554064 8.209067541 7.870483617 7.616284361 7.951115782 8.169646042 8.274982078 47458936 gyrB other category gyrB Mycoplasma mobile 163K superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Mycoplasmatales;family:Mycoplasmataceae;genus:Mycoplasma;species:Mycoplasma mobile; 8.636711959 8.181546042 8.369456927 7.620419671 7.447538204 7.519643165 7.722041615 7.711508536 7.915451598 157285608 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 8.471700726 8.644309922 8.532139007 8.653159144 8.6000903 8.30428321 8.311647742 8.75008477 8.513614556 8.722466029 8.628154205 8.535828671 145251513 tfdA Organic Remediation Aromatics Chlorinated aromatics Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8.647807346 8.085039644 8.570274099 8.435524056 8.008478598 8.122025218 7.753349409 8.179944515 8.179943969 8.282632702 8.216977731 73662912 CadA Metal Resistance Cadmium Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 8.284201927 8.290752887 8.323210196 7.615469269 7.64568967 7.579772414 7.52122722 7.534544928 7.806931388 7.717036566 7.603207216 7.67863775 254403135 mannanase Carbon cycling Carbon degradation Hemicellulose Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 8.917818584 8.87408766 8.894339078 8.494361567 8.286946639 8.51265359 8.496130077 8.178279175 8.472160004 8.198923086 8.237247512 8.612622907 161164129 alkK Organic Remediation Others Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 8.216027674 8.374095771 8.253405939 8.199429309 8.130996017 7.469836182 8.197291558 8.140705546 8.0962616 8.170806239 7.953302367 7.677434373 119668817 oxyR Stress Oxygen stress Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8.577047747 8.271364829 8.724150676 8.768256851 8.473459152 8.364614026 8.352816367 8.766937886 8.570316095 8.735911463 8.778023821 8.895104454 227061490 ahpC Stress Oxygen stress Thermobaculum terrenum ATCC BAA-798 superkingdom:Bacteria;genus:Thermobaculum;species:Thermobaculum terrenum; 8.259816608 8.723625269 8.031144685 8.036635283 7.940505609 7.844415005 7.73838145 7.982925467 7.860897764 7.656442145 7.803037845 189231559 amyA Carbon cycling Carbon degradation Starch Streptomyces glaucescens superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.753269468 8.845546695 8.365422871 8.565624752 8.6439934 8.762133317 9.117638284 8.676726425 8.756450584 8.241150426 8.403043462 8.189425815 219848554 obgE Stress Radiation stress Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 10.3248743 10.6054391 10.60798733 10.75627024 10.87468894 10.84477456 10.55235635 10.84373691 10.38789867 11.08242276 11.05409549 11.03792845 206593062 iro virulence Ralstonia solanacearum IPO1609 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 9.436833022 9.52789369 9.408055507 9.194991914 9.177266532 9.058076286 9.307999949 9.699979479 9.389438664 9.609161002 9.483969118 9.664777318 98977315 ppx Phosphorus Phosphorus utilization Sphingopyxis alaskensis RB2256 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 7.661231566 7.437013282 7.076459543 7.204703247 7.342521045 7.773286818 7.152480869 6.997280806 7.407618376 38232729 sigma_24 Stress Sigma factors Corynebacterium diphtheriae NCTC 13129 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium diphtheriae; 9.45787252 9.183451691 9.335863348 8.73726776 8.99324463 9.213461598 9.413353853 9.216436326 9.348025311 9.29988318 9.428692883 9.470395611 146188565 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9.133259123 9.31846448 8.682821958 8.608804251 8.543552197 8.462853027 8.544939423 8.497039057 8.437542416 8.74388157 189421221 cytochrome Energy process Energy process Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 8.934454203 8.765888114 9.058722493 8.64560499 8.331806494 8.319137524 8.195955125 8.308680566 7.907242116 8.362025151 8.164330297 8.482981292 116699379 pstB Stress Phosphate limitation Syntrophobacter fumaroxidans MPOB 8.463728263 8.186646268 8.676315573 8.051908744 7.349385199 7.780586281 7.414896791 7.213556383 7.215846549 7.91794211 7.533444271 7.76336907 110270775 ppx Phosphorus Phosphorus utilization Heliophilum fasciatum superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Heliobacteriaceae;genus:Heliophilum; 8.992320011 8.781400125 8.993748113 8.48759902 8.356998384 8.213583423 7.990844342 8.237129197 8.367304995 8.28443175 8.104719535 8.450566423 169607635 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 8.866000073 8.820614118 8.881653876 8.11678106 8.833283453 8.889870625 8.610653661 8.803341945 8.502958961 8.936248443 8.610957149 227504635 glnA Stress Nitrogen limitation Corynebacterium striatum ATCC 6940 8.851995668 8.914652563 8.958473791 8.968118873 8.926627924 8.612419855 8.974963926 9.654314541 8.926808869 9.383896383 9.111807151 9.452693422 227879119 hly virulence hemolysin Lactobacillus crispatus JV-V01 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus crispatus; 8.845071394 8.990104713 8.291409363 8.291910678 8.317152059 7.778047917 8.176200401 8.282074434 8.376737866 8.409185684 8.459667526 251776561 cytochrome Energy process Energy process Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.888958028 9.035153194 9.066420748 8.580499455 8.460732585 8.273063427 8.41329889 8.960829831 8.406707414 8.681220154 8.613084427 8.854562428 75704434 pstB Stress Phosphate limitation Anabaena variabilis ATCC 29413 8.196351449 8.455568582 8.435728825 7.921347617 7.850067894 7.793754036 7.428106136 7.378381917 8.091193117 7.523428173 7.588299166 7.886603239 124516574 ferredoxin_I Bioleaching Electron transport Leptospirillum sp. Group II UBA 8.399383161 8.65130058 7.839314126 7.857495256 8.211419536 8.15090581 7.833044519 8.155211691 7.758313339 7.848998067 8.012499486 160420052 amyA Carbon cycling Carbon degradation Starch Bacillus halodurans superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 8.945324222 8.978301982 8.931718454 8.262746843 8.097549509 8.452325905 7.96871853 7.897123393 8.465833825 8.328428986 8.380123835 8.385333234 167569723 sigma_38 Stress Sigma factors Burkholderia oklahomensis C6786 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia oklahomensis; 8.396786014 8.124367403 7.761929239 8.043187706 8.284018311 8.305700588 8.624934664 7.973825146 7.849037134 8.382588619 260608076 type_III_secretion virulence secretion Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 8.40878118 8.493231298 8.821919222 8.113113975 7.514261597 7.690924681 7.610202497 7.520820408 7.808815068 7.494245579 7.454867467 7.818539833 116100184 xylanase Carbon cycling Carbon degradation Hemicellulose Lactobacillus brevis ATCC 367 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus brevis; 8.318559412 8.287944153 8.475900069 7.321608667 7.339639065 7.419021925 7.26643007 7.044348259 7.571222673 91776042 ahpC Stress Oxygen stress Methylobacillus flagellatus KT superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 8.393405022 8.308291218 8.283001998 8.352268943 8.403469478 8.358139738 7.954630551 8.449202411 8.552527506 8.325809514 8.360887734 7.955627586 154276832 pheA Organic Remediation Aromatics Other aromatics Ajellomyces capsulatus NAm1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 8.875811618 9.262126499 9.452532401 9.632913532 9.253381662 9.29759764 9.59235445 9.139536822 9.56897741 8.988858037 8.913944119 260608684 sigma_38 Stress Sigma factors Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 8.309922264 8.630475913 8.672438352 8.155846784 8.090115575 8.551069533 9.024690404 8.002663604 8.936928803 8.051679613 7.715400861 8.237428076 57020415 ZntA Metal Resistance Zinc Campylobacter coli RM2228 8.366511246 8.222549643 8.354159624 8.083625923 8.086401174 8.068040206 8.3402285 8.139741044 8.105846162 8.07685646 8.123404829 7.9876397 115961737 mdlB Organic Remediation Aromatics Aromatic carboxylic acid Strongylocentrotus purpuratus superkingdom:Eukaryota;kingdom:Metazoa;phylum:Echinodermata;class:Echinoidea;order:Echinoida;family:Strongylocentrotidae;genus:Strongylocentrotus; 8.923259585 8.931779838 8.945154691 8.316403424 8.341705733 8.205811874 8.172407544 8.195679704 8.742064721 8.344408429 8.343312657 8.566561256 120434501 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Gramella forsetii KT0803 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Gramella;species:Gramella forsetii; 8.689858618 8.04970316 8.488908598 8.423461802 8.231654525 7.879172636 8.118214353 8.122844085 8.101516166 8.134298836 8.030175226 7.930808676 256668040 pcc Carbon cycling Carbon fixation Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 9.324448688 9.416168751 9.455028635 8.872993623 8.399945877 8.910910827 8.585120247 8.62700566 8.807771729 9.109525646 13475453 AceA Carbon cycling Carbon degradation others Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 8.745388329 8.927104568 8.2267308 8.633614614 9.085012896 8.969109182 8.783561376 9.163884978 9.068334984 9.143631567 9.16314619 9.061572995 157285552 narG Nitrogen Denitrification uncultured bacterium 7.931691626 8.128731203 7.978310643 7.350671218 7.91375017 7.915580214 7.653982454 8.087673716 7.54191727 7.556340337 7.889565348 88182273 endochitinase Carbon cycling Carbon degradation Chitin Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 7.649374947 8.130442161 8.380939193 7.439242509 7.791012721 7.657299596 7.928672794 218548536 amyA Carbon cycling Carbon degradation Starch Escherichia fergusonii ATCC 35469 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia fergusonii; 8.651124183 8.576408542 8.843942912 7.992725043 8.018376959 8.226594866 8.443052381 8.182622263 8.254870678 8.191041517 8.320886793 8.300708077 218296787 fnr Stress Oxygen stress Thermus aquaticus Y51MC23 9.701796291 9.899588306 9.443354186 10.28161519 10.39570782 10.34805448 10.07149352 10.5308262 9.685776483 10.54139305 10.61521983 10.21843653 39955165 Catechol Organic Remediation Aromatics Other aromatics Magnaporthe grisea 70-15 8.310087364 8.316343604 8.515491144 7.946176834 7.837188713 8.167733001 8.499086269 7.945952846 8.69964604 7.848653082 7.58256444 7.872298042 162452378 glucoamylase Carbon cycling Carbon degradation Starch Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 7.402533392 7.288348183 6.959892633 7.414732654 7.528262807 2852656 hydrogenase Energy process Energy process Desulfovibrio desulfuricans superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 7.801480092 7.889795679 7.442831749 7.822767837 7.346888321 7.643704595 7.542732146 227952820 ahpC Stress Oxygen stress Meiothermus silvanus DSM 9946 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 9.768590837 9.715748782 9.863245463 9.176725422 9.054528229 9.088666104 8.93864475 9.04190722 8.898744929 9.066201063 9.134387961 9.435045762 119535710 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 9.888270509 9.62062701 9.879990916 9.639801353 9.584158508 9.306136684 9.348423914 9.540230974 9.281297963 9.564154679 9.747560175 9.911967815 171995571 sigma_70 Stress Sigma factors Burkholderia ambifaria MC40-6 8.805320897 8.749922924 8.559680689 8.380588997 8.775824622 8.786938793 8.549927054 9.027931763 8.776992804 8.610125806 8.756159425 8.640792884 261892979 SMR_antibiotics Antibiotic resistance transporter Vibrio mimicus MB-451 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 7.972819697 8.337795898 7.506930743 6.931567173 7.167622576 7.195254671 6.95436588 7.399556331 116265075 CopA Metal Resistance Copper Polynucleobacter sp. QLW-P1DMWA-1 8.295835375 8.089199767 8.3280858 7.927573752 7.690514929 7.486020733 7.678590434 7.386052651 7.925116497 7.685614923 7.697812809 7.694624604 254394473 pstS Stress Phosphate limitation Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 8.819484916 8.982812304 8.381944105 8.464818952 8.03533677 8.613711186 8.998839143 8.548902295 8.771178878 8.082273239 8.352760653 8.305882614 126637502 AceB Carbon cycling Carbon degradation others Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 9.395612235 9.428964107 8.778614396 8.714919358 8.756839443 8.613242647 8.686120657 8.50644841 8.66890406 8.679013202 9.062804973 197088108 silC Metal Resistance Silver Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 8.151391259 8.873053928 8.965145148 8.145246672 8.179325182 8.102845636 8.43746592 8.040519599 8.683814737 7.907523043 7.992887128 8.036786621 35212488 vanA Carbon cycling Carbon degradation Others Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 9.75083468 9.563376913 8.649159493 8.601504517 8.327268101 8.439793718 8.261862386 227537816 ureC Nitrogen Ammonification Sphingobacterium spiritivorum ATCC 33300 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium;species:Sphingobacterium spiritivorum; 8.61590617 8.510105605 8.585367402 8.003996429 7.861964092 8.005245078 7.72295868 7.806402559 7.948184754 7.83885415 8.165678657 237686864 sigma_70 Stress Sigma factors Teredinibacter turnerae T7901 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 8.824136844 8.597639052 9.166002481 9.109174912 9.119696104 8.302023072 77962876 B_lactamase_C Antibiotic resistance Beta-lactamases Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 7.799308077 8.01931146 6.986728373 7.955609631 7.583354607 7.524060243 7.742050487 7.602846372 7.597828351 158111101 TehB Metal Resistance Tellurium Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 9.27158711 9.223439247 9.201417984 8.911973446 9.104993947 9.140940131 8.892405639 8.975092506 9.106957971 8.759850078 9.239604907 8.8561617 99083393 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.22944058 8.168441132 8.082820592 7.724176496 7.634617336 7.874700162 7.906879082 7.867131655 8.274440944 7.785968063 7.646873433 7.81981457 169759191 akbF Organic Remediation Aromatics BTEX and related aromatics Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 9.088920402 8.830447525 9.178824825 8.564672505 8.489384662 8.67171757 8.704522189 8.556579578 9.143473586 8.956372704 9.072501386 8.900010541 57233678 Ni_Fe_hydrogenase Energy process Energy process Dehalococcoides ethenogenes 195 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides;species:Dehalococcoides ethenogenes; 9.106119909 8.799068515 9.049739899 8.550223034 8.663518737 8.649964252 8.506296329 8.620061993 8.450299601 8.473988214 8.647854441 156233985 sigma_24 Stress Sigma factors Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 7.866709832 7.680468068 8.436655128 8.021852164 7.668637138 8.425480514 7.372326853 7.396760347 189189748 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 8.643672727 8.599236866 8.869159684 8.498097939 8.411843761 8.193855608 150384740 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Victivallis vadensis ATCC BAA-548 superkingdom:Bacteria;phylum:Lentisphaerae;family:Victivallaceae;genus:Victivallis;species:Victivallis vadensis; 8.216091707 8.107808503 8.24688735 8.195268127 8.244993586 8.055969343 8.232476214 8.463122563 8.298457466 8.385482827 8.343577414 8.136829304 152984401 silC Metal Resistance Silver Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.618791956 8.648892873 8.628293874 8.099400043 8.47219715 8.547166692 7.883392443 8.558722488 8.03867547 8.187207177 8.036724965 14530750 sigma_32 Stress Sigma factors Ralstonia metallidurans CH34 9.134491423 9.127244869 8.965946143 148244781 NirB Nitrogen Assimilatory N reduction Candidatus Vesicomyosocius okutanii HA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:Calyptogena okutanii thioautotrophic gill symbiont; 8.024156331 7.928710365 7.33090228 7.156980661 6.982754429 7.207792886 7.196721112 21221875 sigma_24 Stress Sigma factors Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 9.906926367 9.610206549 9.614169576 8.959394672 8.792504512 8.791246511 9.127303161 8.708760404 9.162011423 8.962732656 8.930143115 9.209565119 218463047 nagK Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium etli Kim 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.483504689 8.871002222 9.029203181 8.776665824 8.80456067 8.410049489 8.635252739 8.689042349 8.640638623 8.788084218 8.798983975 8.632468184 167668667 CopA Metal Resistance Copper Anaerotruncus colihominis DSM 17241 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Anaerotruncus;species:Anaerotruncus colihominis; 8.541985449 8.54705133 8.110103317 8.3116152 8.364672555 8.463870847 8.609255059 8.660311944 8.776225518 8.57289197 39936374 amyA Carbon cycling Carbon degradation Starch Rhodopseudomonas palustris CGA009 9.538766396 9.487616325 9.461219614 9.175117832 9.173281761 8.912566344 8.912761708 9.242498069 9.167856887 9.28638093 9.154665456 9.098507268 71402616 nasA Nitrogen Assimilatory N reduction Gloeothece membranacea PCC 6501 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Gloeothece;species:Gloeothece membranacea; 8.254337608 8.299249695 8.14936222 8.152094271 8.457752604 8.412315159 8.363107198 8.376045371 8.152193235 8.046752284 8.12492131 7.760771739 29610251 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 8.68528414 8.604346512 8.827275698 8.889888779 8.817153407 8.933342419 8.996669956 8.864706374 8.641701439 8.838220955 8.884308676 8.468568184 118473667 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.731006802 8.521755158 8.696121059 8.305873041 8.374441625 8.161785672 7.972742607 8.385450106 8.181842608 8.260720262 8.276892268 94471125 narG Nitrogen Denitrification uncultured bacterium 8.901412442 9.040035849 8.866437822 8.840725279 9.00224587 8.978652163 9.079888479 9.129753601 8.911765825 9.439669814 9.240098062 9.050998395 227295564 cda Carbon cycling Carbon degradation Starch Deinococcus geothermalis DSM 11300 8.637571006 8.587444985 8.516406594 7.980375122 8.209619829 8.29482234 8.225969825 7.823789053 8.566791317 7.852956612 8.055079557 8.005416169 81299380 sigma_70 Stress Sigma factors Synechococcus elongatus PCC 7942 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus;species:Synechococcus elongatus; 8.672551885 8.193348203 7.992074655 8.45657073 8.418074787 8.872346161 8.080253918 8.006538911 8.072011823 26278706 narG Nitrogen Denitrification uncultured bacterium 8.818375525 8.76348258 8.913303328 8.20187856 8.190041853 8.255440121 8.290935459 7.965258958 8.549443685 8.105696102 8.304147641 8.200088172 84519310 nhh Organic Remediation Aromatics Nitoaromatics Prochlorococcus marinus str. MIT 9211 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 8.6220961 8.559201096 8.267196567 8.610677044 7.840868583 8.331990669 8.559094996 8.285619478 8.680514431 8.093518322 8.295702352 7.936127384 219868028 narI Stress Oxygen limitation Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 7.913346247 8.104700388 8.09770081 7.657114468 7.852173013 7.453453606 7.516713519 7.930427414 8.022384703 7.547280472 7.625220405 7.50303213 229821901 pstB Stress Phosphate limitation Beutenbergia cavernae DSM 12333 9.200454807 8.660153792 8.973177187 8.721140344 8.71502516 8.555860329 8.879753814 8.209262855 9.127288213 8.551453408 8.252014975 8.589677824 239993774 Mex Antibiotic resistance transporter Alteromonas macleodii ATCC 27126 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 8.011105558 8.089637091 7.178856808 7.030848659 7.330960465 6.614165401 6.454963228 7.381091574 6.967616154 7.215522945 270264596 iro virulence Serratia odorifera 4Rx13 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia odorifera; 9.049294762 8.861987554 9.02997905 8.434620263 8.474488179 8.285132562 8.221947551 8.261911946 8.583412785 8.296051666 8.138132342 8.574945483 159898763 cap virulence capsule Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 8.196373237 7.890606115 7.521536808 7.756488175 7.785600424 7.021563635 7.878074331 7.732792073 7.975568018 7.659021328 54016258 pheA Organic Remediation Aromatics Other aromatics Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 9.643221604 9.703938407 9.869177277 10.34498001 10.14939912 9.691595852 9.808263831 10.33925313 9.986568311 10.13417166 9.800822095 10.1979858 221730579 fnr Stress Oxygen stress Diaphorobacter sp. TPSY 9.062754808 8.840991957 8.913275577 8.880816145 8.64202113 8.975524275 8.838691776 8.798290143 8.774879249 8.853808428 8.720224085 183221263 alkK Organic Remediation Others Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira biflexa; 8.696532893 8.607499788 8.69437438 8.351262507 8.208407366 8.087979877 7.884737135 7.941197765 8.039183794 7.836364868 7.924063102 8.335755225 77627612 HBH Organic Remediation Aromatics BTEX and related aromatics Corynebacterium cyclohexanicum 8.330211545 8.670901188 8.508804356 7.806319623 7.6578912 8.216893931 8.185163618 8.113259536 8.139292374 7.713194386 7.912511639 8.268181255 85826089 hrcA Stress Heat shock Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 9.375137898 9.438848892 9.487622353 8.588793971 8.616743906 8.60534603 8.974985062 8.656879247 9.192683488 8.460037875 8.531887582 8.779353874 145234081 BADH Organic Remediation Aromatics Other aromatics Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8.191792285 8.401046799 8.393446711 7.845920988 7.409000858 7.595824708 7.123751223 7.03785168 169884852 ahpC Stress Oxygen stress Synechococcus sp. PCC 7002 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.921501018 8.859236529 8.927135421 8.378968162 8.411262886 8.29310965 8.682379424 8.760584952 8.687345601 8.684738994 8.506539967 8.325884637 193160564 APS_AprA Sulphur adenylylsulfate reductase uncultured bacterium 7.110079621 7.170156748 7.590866774 7.240674713 6.886923608 6.990407352 6.795943797 7.312713185 189421803 B_lactamase_C Antibiotic resistance Beta-lactamases Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 8.217008862 8.448928192 8.43741888 8.284382029 8.322405722 8.27986423 8.358397454 8.613226626 8.442873066 8.59968344 8.295760668 8.296916959 124257913 tutFDG Organic Remediation Aromatics BTEX and related aromatics sulfate-reducing bacterium TRM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae; 9.301274893 9.511420029 9.464964506 8.776320962 8.853092763 8.742153257 8.567494585 8.20191394 8.681823006 8.624982446 8.570251467 8.840114439 254384440 sigma_70 Stress Sigma factors Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 9.467299288 9.598952818 9.530241322 9.172372421 9.172298682 8.866402562 9.023334714 9.05065412 8.760172974 9.158581229 9.009777653 9.207625938 269210820 cap virulence capsule Actinomyces sp. oral taxon 848 str. F0332 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 848; 7.382527483 7.489067291 7.287649949 7.085663444 7.432266677 7.740975445 7.118515937 7.621673612 169601362 nagG Organic Remediation Aromatics Aromatic carboxylic acid Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 8.937700144 8.685750393 8.778643902 8.681842674 9.144560957 8.653563485 8.520221581 7.916070442 7.944724148 8.156070532 85824318 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.223289083 8.061175398 8.259743593 8.061743608 7.770355618 7.679870146 7.663083804 7.547700844 7.909616033 7.598820477 7.338522189 7.752218964 145254327 nmoA Organic Remediation Aromatics Nitoaromatics Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.684646865 7.298858448 7.325938791 7.168711963 7.622383307 8.169460611 7.830586314 7.276262571 7.652203404 192897588 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 8.138180062 8.20040091 7.309782094 7.198815307 7.356993538 7.032539463 7.553228108 220935414 ArsC Metal Resistance Arsenic Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 8.112628361 8.101859538 8.004349924 7.781657298 7.663716734 7.725993588 7.814299644 7.54273587 7.690062842 69284222 ara Carbon cycling Carbon degradation Hemicellulose Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 8.812169355 8.4949323 8.46051372 8.324337177 8.256431358 8.328912733 8.563739882 8.275096863 8.542868688 8.19559747 8.295460722 8.180862028 116672641 ZntA Metal Resistance Zinc Arthrobacter sp. FB24 9.218992811 8.601127307 8.43168442 9.361237502 9.242904761 8.843805377 9.446892888 9.170496839 8.840658088 9.158946283 9.110662739 150960101 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas aeruginosa PA7 8.44615009 8.733687812 8.358810835 8.653042794 8.900958969 8.708557566 8.998649352 8.500588658 8.725432811 8.820033401 8.661791309 46196060 AceB Carbon cycling Carbon degradation others Thermus thermophilus HB27 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 8.827384429 8.954397657 8.851388335 8.253249407 8.024899634 8.280857814 8.077682537 8.188169364 8.24754524 8.302428415 8.065194752 8.365112631 169793492 narG Nitrogen Denitrification uncultured bacterium 9.309975696 8.591570208 8.72750535 8.990331008 8.827247683 8.713416943 8.417619938 8.836187241 8.351110115 8.911263344 8.960219398 8.671755118 154150311 atzA Organic Remediation Herbicides related compound Candidatus Methanoregula boonei 6A8 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;genus:Candidatus Methanoregula;species:Candidatus Methanoregula boonei; 8.095024178 7.867223295 6.933594025 7.59581549 154496935 ahpF Stress Oxygen stress Bacteroides capillosus ATCC 29799 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides capillosus; 8.339968231 8.534811891 8.21300413 7.614403496 7.964976544 8.437741043 83576489 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 8.907907888 8.547490617 8.609553715 8.498377512 8.48497774 8.293174001 8.288102805 8.309761303 8.469903121 8.277055546 8.226573968 8.087381963 114341130 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 8.268065344 8.241140676 8.597095865 7.48521138 8.011077499 8.278732787 8.646052139 7.523195073 8.545024681 7.954190305 7.865235141 7.892842646 148261701 sigma_32 Stress Sigma factors Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 8.796916222 8.728233718 9.005811029 8.732781565 8.536165705 8.829597721 8.64455037 8.940649517 8.677477788 8.862240421 8.433222548 223588547 pstB Stress Phosphate limitation Nautilia profundicola AmH 8.196482057 8.317771486 8.025170548 7.80070058 7.771820588 7.666514865 7.590372844 8.045431126 7.480977338 7.956638009 118170339 nmoA Organic Remediation Aromatics Nitoaromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.459421158 8.339949454 8.326210333 8.089840389 7.81964434 7.891266035 7.884016167 7.472520454 7.841843377 7.558478618 7.951027774 170079020 ppk Phosphorus Phosphorus utilization Synechococcus sp. PCC 7002 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.357618139 8.219883516 8.572922556 8.13825284 7.779013345 7.750093921 8.154358146 8.126914603 8.34516207 7.88611154 7.919720637 7.510399172 229379293 pstB Stress Phosphate limitation Oxalobacter formigenes OXCC13 7.827665042 7.524319668 7.44180868 7.270690309 7.519007251 7.657317252 7.758839972 7.449033756 7.581223036 62288584 ssb Bacteria phage REPLICATION Enterobacteria phage RB43 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 6.911491438 6.471827211 7.358298513 154252606 sigma_32 Stress Sigma factors Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 8.163778272 8.329977649 8.704850035 8.340030197 8.129609563 7.786994316 8.175564185 8.410121576 8.812484626 8.025535 7.957984537 8.014132105 77973541 SMR_antibiotics Antibiotic resistance transporter Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 9.969717387 9.951547928 9.67094304 9.357755097 9.555120708 9.767716437 9.0083592 9.410103587 9.277154461 9.498406771 9.669574851 9.536966376 126707782 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 9.091946862 8.936833155 9.219686278 8.576695972 8.447304792 8.287002314 8.556929357 8.597575432 8.363564141 8.468404504 8.452771445 8.667529519 119766256 ahpF Stress Oxygen stress Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 8.399791661 8.309497818 8.365144383 8.255935283 8.123007007 7.945229865 7.824250553 8.241441445 8.147142607 8.306916891 7.82012618 8.169187261 154245929 sigma_32 Stress Sigma factors Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.649645228 8.532798346 8.749240206 8.26809112 8.198076967 8.1064186 7.966181909 8.186108827 8.458409556 8.295540242 8.369614946 8.616352952 191162963 cytochrome Energy process Energy process Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.348883518 8.152480253 8.202640561 8.442070998 8.238383727 7.904785135 8.175731927 8.158611588 8.208392851 8.177769816 8.358063417 7.939385704 254394890 pcc Carbon cycling Carbon fixation Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 8.062565588 8.137471228 7.230096236 7.869061868 7.916357062 7.928881019 7.217287181 8.078314474 6.957240767 7.476375607 7.302368403 227363960 nplT Carbon cycling Carbon degradation Starch Lactobacillus reuteri MM2-3 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus reuteri; 8.969397095 8.897411607 9.083254194 8.603107956 8.49997519 8.494549828 8.40107493 8.577190324 8.48894657 8.525500531 8.546652074 8.740161599 34494851 ureC Nitrogen Ammonification Haloarcula aidinensis superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula; 8.542978528 8.302579717 8.239028925 7.855594229 7.863919319 7.998859047 7.997565074 8.368883557 8.381156947 7.815688346 67157717 nmoA Organic Remediation Aromatics Nitoaromatics Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 8.314293683 8.34926354 8.300694381 7.659469673 7.49966634 7.693544722 7.84187398 7.057471516 8.063291696 7.229819476 7.557016564 119776603 cytochrome Energy process Energy process Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 9.000704528 9.216607226 9.407090384 8.376190671 8.518770061 8.536172732 8.699665678 7.938228172 8.576965441 8.581361779 8.34914749 8.835750771 57339173 clpC Stress Protein stress Bifidobacterium animalis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium; 10.3067844 10.37045687 10.261202 9.526625707 9.661002026 9.989234782 10.37142158 9.995910716 10.59381967 9.928754386 10.03808172 9.938514382 25005264 lip Carbon cycling Carbon degradation Lignin Pleurotus eryngii superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pleurotaceae;genus:Pleurotus; 8.518702366 8.893792551 8.881246993 8.239255072 8.022342852 7.939001973 8.257630023 8.001377881 8.472087149 7.968988557 8.193855351 8.307783747 255258525 sox Sulphur Sulphur oxidation Sideroxydans lithotrophicus ES-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Sideroxydans;species:Sideroxydans lithotrophicus; 8.691113449 8.556956933 8.66528607 8.364450024 8.032851987 7.929563968 7.999210805 7.851880036 8.351227823 8.119168852 7.595534902 8.15091751 240862176 ara Carbon cycling Carbon degradation Hemicellulose Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.574776934 8.756800186 8.917104295 7.984984969 7.907810814 8.307094354 8.924547457 8.174971949 8.476379922 8.256954831 8.392779715 197103286 CopA Metal Resistance Copper Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 8.470477022 8.375062032 8.606419807 8.725700096 8.522268175 8.279306569 8.725919973 8.49791765 8.442835485 8.406583975 8.465046838 8.324213528 51855588 pstB Stress Phosphate limitation Symbiobacterium thermophilum IAM 14863 10.28535982 10.2376738 10.22740593 9.538847653 10.01741154 10.47072 9.44521915 10.27955754 9.568954937 10.13394331 9.885577342 209530632 endoglucanase Carbon cycling Carbon degradation Cellulose Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 9.493631431 9.513749831 9.517310619 8.912997686 8.964054227 8.792346437 8.798517059 9.123694555 8.937189782 9.101393355 9.021386255 9.230565547 114740373 BADH Organic Remediation Aromatics Other aromatics Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 8.757879177 8.591846152 8.632919013 8.758949027 8.496052929 8.583803789 8.783130926 8.427104775 8.528553765 8.737916126 8.971667238 8.522364848 7578632 amoA Nitrogen Nitrification superkingdom:Bacteria; 8.574351989 8.74273386 8.151978657 7.956999594 7.944568 7.757195645 7.754608475 8.119122466 8.025270042 8.151350796 8.238314292 108460873 exochitinase Carbon cycling Carbon degradation Chitin Myxococcus xanthus DK 1622 9.75632209 9.590214448 8.726923864 8.637045705 8.690683082 8.743755309 8.746233937 8.792611815 9.105371834 9.072288728 9.03553133 229765830 ara Carbon cycling Carbon degradation Hemicellulose Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 7.907405187 7.80581214 7.224102082 7.944943571 7.593043624 7.391849328 7.217072475 7.164511936 7.465918381 56477411 fnr Stress Oxygen stress Aromatoleum aromaticum EbN1 8.12083308 7.991218485 8.072707386 8.611347877 8.64502619 8.449755792 8.128401489 8.234169767 7.993710148 8.205119788 7.917720643 7.829034938 151302138 APS_AprA Sulphur adenylylsulfate reductase Desulfovibrio ferrophilus 8.544155089 8.859361288 8.47966285 7.996229346 8.001166666 8.067883238 8.254117199 7.901389005 8.16317795 7.853544442 8.244009506 8.00880387 167351640 nagI Organic Remediation Aromatics Aromatic carboxylic acid Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.664820896 8.65976717 8.637435122 7.839828386 8.058817948 8.34694409 8.610359823 7.924881712 8.445261162 7.803599919 8.181436439 7.965480683 254524337 AceB Carbon cycling Carbon degradation others Stenotrophomonas sp. SKA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 9.464072965 9.514029141 9.66932571 8.986822419 8.893351799 8.766942559 8.748637871 8.707148349 8.757567264 8.718962814 8.82472057 9.150290843 126461212 CadA Metal Resistance Cadmium Rhodobacter sphaeroides ATCC 17029 9.186778071 9.578629131 8.615582939 8.634432209 8.581487636 8.349284811 8.559312329 8.4024099 8.582342365 8.544322288 8.818677842 169863293 glx Carbon cycling Carbon degradation Lignin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 8.443954031 8.678579215 9.049237242 8.59834028 8.882530668 145222248 ArsC Metal Resistance Arsenic Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.594497498 8.69001698 8.448012443 8.49152715 8.193464615 8.473277552 7.805645216 8.434801932 8.234441303 8.427780772 8.554707048 8.252172266 33620684 Host_recognition_T4_type Bacteria phage HOST RECOGNITION/STRUCTURAL Enterobacteria phage RB49 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 8.366020015 8.6429135 7.832409413 7.620357843 7.742108296 7.716917694 7.340246307 8.149990282 7.57140572 7.652846534 7.744365748 113527123 sigma_38 Stress Sigma factors Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.399596322 8.025549998 8.319216109 8.195952718 7.971271552 7.613315474 7.874372722 7.756723305 8.145912336 7.912822458 7.561382373 7.658844602 56314660 ArsC Metal Resistance Arsenic Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 8.489034113 8.470185567 8.681158568 7.567687807 7.540943646 7.748412201 7.914283921 7.75903001 7.566984524 7.790349831 7.690151314 170654381 fnr Stress Oxygen stress Methylobacterium radiotolerans JCM 2831 8.88160329 9.051165194 9.236839838 8.459246149 8.707897612 8.624017895 8.724582176 8.175171863 8.859062289 8.580802916 8.635187586 8.629364453 76573856 PceA Organic Remediation Others Desulfitobacterium sp. KBC1 7.500997624 7.513859418 7.239463376 6.918033328 7.107909913 7.627293229 110822329 katE Stress Oxygen stress Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.481191036 8.554173978 8.480283612 8.180796939 7.996329699 8.518728182 8.057277499 8.026621413 8.212902392 7.844407546 87307035 sigma_70 Stress Sigma factors Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 9.114210211 8.512735545 8.17624017 9.05521044 8.882493025 8.91515193 8.702634938 9.289284005 8.613070423 9.038539468 8.886547616 82736603 gyrB other category gyrB Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.25761834 8.260522304 7.911391863 7.77408304 7.333938987 7.838643235 7.759549922 7.620778618 7.988273401 7.632746864 118733328 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.425102518 8.773530405 8.296917647 8.066999474 8.326699222 8.347337906 8.639984349 8.215579082 8.245977496 8.198541381 8.358256475 7.982982494 145553716 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 8.329954522 8.05538068 8.147088391 8.426028075 7.955925781 7.447717025 8.023613529 8.026247732 8.038876127 7.868446378 257898511 nplT Carbon cycling Carbon degradation Starch Enterococcus faecium Com15 8.16894777 8.230892506 8.207622195 7.776142287 7.354513037 7.720624894 7.303527991 6.823973167 7.767466196 7.312329484 7.400882819 7.612380126 6458545 AceA Carbon cycling Carbon degradation others Deinococcus radiodurans R1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 9.412942393 9.640928621 9.441251778 192764496 narG Nitrogen Denitrification uncultured bacterium 8.426892945 8.55622943 8.607060955 8.199937157 7.932783598 7.924944639 8.009889398 8.16123873 8.362806218 8.281659099 8.058081203 8.089325413 78062836 iro virulence Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.427843069 8.385282732 8.399858677 8.124146455 7.977589533 8.522818423 8.237238165 8.064974204 8.422814062 7.778751365 7.664874165 8.011962203 170026536 aoxB Metal Resistance Arsenic Pseudomonas sp. TS44 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.855216956 8.245628221 8.115543157 8.324550046 8.540513175 8.241072099 8.442711777 8.55851925 8.127352198 142853113 sigma_38 Stress Sigma factors Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 8.285805361 8.38639997 7.572173258 7.720098839 7.902461496 7.912814069 7.673180796 8.177320867 7.75767187 7.88632353 7.99279792 146190575 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.690111033 8.671827784 8.400378027 8.817699826 8.913898479 9.09443395 8.599054299 9.240624374 8.702261458 8.955085282 8.630360436 9.012908531 160915578 bglH Stress Glucose limitation Eubacterium dolichum DSM 3991 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichi;order:Erysipelotrichales;family:Erysipelotrichaceae;species:Eubacterium dolichum; 8.210961598 8.242320283 8.154348002 7.653242373 8.451440001 7.93493403 8.076151147 7.88319058 8.465856147 66046102 nmoA Organic Remediation Aromatics Nitoaromatics Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 8.2108177 8.317656016 8.245946434 7.664421054 7.997010972 8.210904513 8.198114432 8.015084092 8.207176654 8.131989748 7.969491045 7.875879049 78513570 xylC Organic Remediation Aromatics BTEX and related aromatics Bradyrhizobium sp. BTAi1 9.287570406 8.764849599 8.874685136 8.587434088 8.668620671 8.490084429 8.384534148 8.846186527 8.51624461 8.720070306 8.728603407 8.861889605 262224429 pilin virulence pilin alpha proteobacterium HIMB114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales; 8.296317953 8.342157343 8.676688395 7.817969401 7.978211444 7.946238916 7.301720862 7.532404497 8.055082741 7.647896281 7.885578878 8.028993059 259907587 proV Stress Osmotic stress Erwinia pyrifoliae Ep1/96 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia pyrifoliae; 8.243683203 8.048073509 8.082444085 8.157918482 8.403413809 7.910583726 8.073193371 8.160443926 8.060995855 8.281891669 8.011636037 145215922 CopA Metal Resistance Copper Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.758685706 8.596544316 8.520268392 8.591214305 8.465393055 8.420294028 8.490349995 8.886732769 8.463309642 8.898320795 8.82243713 8.817427421 30698534 catB Organic Remediation Aromatics BTEX and related aromatics Rhodococcus erythropolis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.142725688 8.442673008 8.092983891 8.044198184 7.609939179 8.120839214 7.569168126 7.953898927 8.084929024 7.575770818 8.032692672 7.754143794 167347732 silC Metal Resistance Silver Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.873398137 8.657450271 8.399255549 8.392725492 8.540580643 8.34466607 8.541049997 8.858942283 8.813609622 8.639676399 8.53071592 8.602314764 126167022 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas aeruginosa C3719 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 9.665219801 9.41774867 8.992333381 9.925720004 9.657740046 9.720659952 9.248889658 9.870750733 9.397668569 9.588435867 9.803750375 9.302903322 163739642 glnA Stress Nitrogen limitation Phaeobacter gallaeciensis BS107 8.682617708 8.481718828 8.487583906 8.6222443 8.464304755 8.496428137 8.883914219 8.692418786 8.430102895 8.386881806 8.527470234 8.452384102 124002466 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Microscilla marina ATCC 23134 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Microscilla;species:Microscilla marina; 8.011707807 8.025616291 7.556711589 7.725962047 7.468606904 7.217896807 7.64705149 7.253056918 7.339331883 7.038793996 111219909 phtA Organic Remediation Aromatics Aromatic carboxylic acid Frankia alni ACN14a 9.492935315 9.605555066 9.558189992 9.521629522 9.424511646 9.402885488 9.735486129 9.815793325 9.384818705 9.835452707 9.672327269 9.659057001 91786532 pcaG Organic Remediation Aromatics Other aromatics Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 8.427247214 8.511051007 8.602814267 7.479618599 7.888925224 8.174193105 8.762854553 8.029866671 8.556790438 8.14337826 7.793185932 8.40584951 239519233 amyA Carbon cycling Carbon degradation Starch Clostridiales bacterium 1_7_47_FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales; 9.471178479 9.454328026 9.385611745 8.728207576 8.815084773 8.764618905 8.678931504 8.715372047 8.788018781 8.804428699 9.047145048 229917197 fnr Stress Oxygen stress Exiguobacterium sp. AT1b 8.36953136 8.108327277 8.327139921 8.167185643 8.057658967 8.167387328 8.128965073 7.904561677 8.216713956 8.011384887 7.898370216 259170102 srt virulence surface protein Lactobacillus antri DSM 16041 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus antri; 9.34800964 9.287390213 9.556259799 8.763512636 8.68011593 8.789061723 8.677052233 8.411598579 8.774099398 8.604643209 8.669709401 8.842220149 88859036 obgE Stress Radiation stress Pseudoalteromonas tunicata D2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas tunicata; 8.701411014 8.838020688 8.421378669 8.085555838 8.789641311 9.067290903 8.464893342 8.604775502 8.86019742 8.506329895 9.106627515 8.378652355 242812750 ABC_antibiotic_transporter Antibiotic resistance transporter Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 8.40935299 7.940157817 7.600717655 7.369769116 7.324177629 7.300282587 7.309756466 7.772749607 7.314933674 7.235984626 7.481979798 145048145 pimF Organic Remediation Aromatics Aromatic carboxylic acid Polynucleobacter sp. QLW-P1DMWA-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 8.628050062 8.472908332 8.749639126 7.924256101 7.929995974 7.754500099 7.442339755 7.656607134 7.925672225 7.680247624 7.688279668 7.984527305 34496305 obgE Stress Radiation stress Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 9.24833774 9.231938966 9.266462722 8.451653921 8.365623122 8.912665968 8.792262041 8.397735551 8.865550416 8.857214244 8.888769152 9.037730271 119819273 nitA Organic Remediation Aromatics Other aromatics Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 8.343891387 8.473981269 9.191308301 8.815749967 8.84185869 8.357258616 8.587695243 9.178569688 9.027485319 9.121787571 9.200484287 9.256333325 25270165 nhh Organic Remediation Aromatics Nitoaromatics Rhodococcus sp. superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.813080129 8.861700336 8.975459518 8.678386706 8.375691782 8.255812742 8.444871376 8.543665781 8.320807586 8.685643439 8.603375147 8.76028235 86609792 obgE Stress Radiation stress Synechococcus sp. JA-2-3B'a(2-13) superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 9.266132378 9.387173183 9.185041616 8.848191558 8.689290305 8.768954809 8.562644536 8.793810374 8.52086201 8.696650684 8.772975922 9.060764432 218780843 CopA Metal Resistance Copper Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 8.813714252 8.88046744 8.993348494 8.671396878 8.834083706 8.792708176 8.604592303 8.959118834 8.609662415 8.571430444 8.806646964 8.759923715 118715779 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 9.131923571 9.49285618 9.260815806 9.328997352 9.483639267 9.500642556 9.933064123 9.570426015 9.940132289 10.0054 9.983318152 218564086 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 8.768086383 8.697520361 8.0968531 8.024010109 7.794144696 7.874371566 8.052769032 8.354743385 8.120983713 8.01796875 8.030409572 86553861 ureC Nitrogen Ammonification Synechococcus sp. JA-3-3Ab superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 9.131961995 9.100067095 8.937533025 8.31115215 8.297728622 8.084246931 7.938872206 7.758754453 8.014820111 7.965772596 8.30789933 149902136 dsrA Sulphur sulfite reductase Clostridium beijerinckii NCIMB 8052 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium beijerinckii; 8.83167706 8.852900552 9.076887616 8.247868325 8.237899476 8.248466361 8.114509088 7.867442114 8.016357197 8.050764473 7.874875168 8.376864083 61676016 gyrB other category gyrB Simkania negevensis superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Simkaniaceae;genus:Simkania; 8.570062548 8.411825274 8.411442519 8.67175806 8.581666927 8.393121513 8.433502964 9.053260226 8.592528546 8.78646357 8.843144973 453224 exoglucanase Carbon cycling Carbon degradation Cellulose Phanerochaete chrysosporium superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 8.409862901 8.13373667 7.477778323 7.47877541 7.643581446 7.704716967 7.183485836 7.980690744 7.334430943 7.532887653 7.652411092 84622442 iro virulence Xanthomonas oryzae pv. oryzae MAFF 311018 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 9.793717268 9.782133472 9.709074478 10.45130674 10.41393746 10.22084258 9.863985665 10.53686866 10.16335959 10.1892526 9.965544385 213022511 nrfA Nitrogen Dissimilatory N reduction Salmonella enterica subsp. enterica serovar Typhi str. 404ty superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 8.558167021 8.472032212 8.244863878 8.321035354 8.179759085 7.845361917 7.850319032 8.465801611 8.497380067 8.415347309 8.159132592 8.206843071 94552570 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Candidatus Koribacter versatilis Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 9.379284101 9.371061629 9.187488014 8.58760375 8.562249677 8.450974727 8.656905906 8.566823679 8.62836551 8.578401929 8.626771385 34017190 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 8.925734218 9.039182291 9.048086981 8.239857187 8.096320734 8.329255005 7.856856319 7.579465359 8.079437403 7.961921993 8.067695435 8.362031191 118619515 proW Stress Osmotic stress Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 10.29027895 9.623936523 9.744246539 9.747281889 9.481307423 9.240493125 9.828942455 9.669391009 10.15316645 9.801745354 9.815529765 9.523208111 151361752 glnA Stress Nitrogen limitation Kineococcus radiotolerans SRS30216 8.365358547 8.174651094 7.959501057 8.176302925 8.184099332 8.521742479 8.344822224 8.400005285 8.397684105 8.669143727 8.574521266 194016276 katE Stress Oxygen stress Bacillus pumilus ATCC 7061 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pumilus; 8.271846492 8.350238099 8.137433852 8.096111087 7.665079702 7.710795647 7.850903443 7.747337783 7.768275775 60476322 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.80469878 7.859688166 7.69473519 7.436039293 7.796622388 7.734170315 7.873037449 7.541124845 7.958726759 153007262 sigma_24 Stress Sigma factors Anaeromyxobacter sp. Fw109-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 8.684990441 8.641240924 8.303129341 8.03456926 8.362203066 8.409847192 8.298972273 8.660235792 8.2375743 8.657424878 8.808309935 8.350092579 89334795 atzA Organic Remediation Herbicides related compound Desulfitobacterium hafniense Y51 8.365964897 8.862274689 8.687760468 8.559094921 8.156214317 8.40641617 8.652979375 8.41098148 8.907082626 8.763179657 8.553117551 8.678321396 86568690 glnA Stress Nitrogen limitation Frankia sp. CcI3 9.47983016 9.928751528 9.750932651 9.868438318 10.16625831 10.09060605 9.954202275 10.46021614 9.721845788 10.31587119 10.39579573 10.0961845 115256008 phn Organic Remediation Herbicides related compound Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 9.398450416 9.226595223 9.349747857 9.013294649 8.75595051 8.794898981 9.180045284 8.954914421 9.214032855 8.874119016 8.573243621 8.902292196 119898814 proO Organic Remediation Aromatics Other aromatics Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8.519875001 8.428842223 8.635623227 7.839803084 8.605675382 7.982931185 8.219734396 8.564868385 8.012068205 123967456 xylM Organic Remediation Aromatics BTEX and related aromatics Sphingobium yanoikuyae superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 8.265621218 8.01995561 8.222009937 7.86522782 7.747300728 7.739594046 7.594584772 7.887189847 7.968908623 7.872769671 7.585246622 7.687509551 149916815 sigma_70 Stress Sigma factors Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 8.346076731 7.920498265 8.275698551 8.264051233 8.43756907 7.508803527 8.193340183 7.980550457 8.187313463 8.396941082 7.691421699 255991674 sigma_70 Stress Sigma factors Clostridium thermocellum DSM 2360 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 8.22662031 8.2414678 8.148784583 8.271248546 8.119564764 8.18363439 8.043040105 8.207226404 8.229208646 8.010170051 7.593867616 118705772 mauAB Organic Remediation Herbicides related compound Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 9.386138819 9.167813972 9.342253278 8.90532139 8.860768004 8.680004046 8.744053333 8.947786414 8.879887044 8.875848493 8.855166334 8.991284395 111022801 pnbA Organic Remediation Aromatics Nitoaromatics Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.222801652 8.374976364 8.104531347 7.938314386 8.0287308 8.265491955 8.404054364 8.233278044 8.291997687 8.175773105 8.087318969 256775795 fnr Stress Oxygen stress Streptomyces hygroscopicus ATCC 53653 9.745150492 9.861386538 9.891770346 9.144652882 9.299571005 9.248722879 8.985776646 8.94654042 8.919773232 9.143579348 9.238070416 9.449281913 58201092 bphA Organic Remediation Aromatics Polycyclic aromatics Acinetobacter sp. GXA7 8.064436085 8.382491729 7.627682776 7.431727557 7.637469112 7.444630008 7.724946521 7.984744559 7.801724616 7.857696948 7.866028136 113729007 mer Metal Resistance Mercury Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.869952879 9.019645408 8.904829569 8.594028748 8.474335284 8.399801268 8.355620359 8.580271982 8.459217566 8.443036092 8.616543982 88775986 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 8.841327146 8.828182643 8.773338953 8.157932714 8.156671801 8.02249597 7.883209567 7.785401398 8.446847033 7.949854458 7.743283402 8.237128692 254985018 nrfA Nitrogen Dissimilatory N reduction Geobacter sp. M18 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 9.360494359 9.317970524 9.067482378 8.601452092 8.532356668 8.554985714 8.543885315 8.215891001 8.218083063 8.440284596 8.565154773 8.679404259 182677640 ChrA Metal Resistance Chromium Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 8.781117588 8.350565398 8.389358497 8.054434573 7.759418486 7.714462385 7.781595104 7.747317449 8.061881071 7.796404231 7.693760029 7.848834268 82742567 CopA Metal Resistance Copper Shewanella sp. W3-18-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 9.655812183 9.691281221 9.244956973 8.958650848 8.638065568 8.809903349 9.449406741 9.057956151 9.391705001 8.894154914 8.874741017 8.991120422 83840945 sox Sulphur Sulphur oxidation Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 9.60804361 9.492170833 9.70235629 8.99809832 8.949133009 8.831259318 8.821293212 8.650308733 8.76059385 8.758190493 8.836781451 9.071792009 169860907 ahpC Stress Oxygen stress Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 8.387575217 8.672325496 8.781421876 8.296864231 7.888986613 8.108089665 8.01912752 8.268255037 8.350628445 8.083601252 7.802694083 8.026963846 207084231 ppx Phosphorus Phosphorus utilization Campylobacterales bacterium GD 1 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales; 8.627205203 8.553108803 8.586257028 8.408436491 8.050308685 8.000886848 7.932065274 8.186472732 7.834079148 7.69732037 8.203779332 239821352 phoB Stress Phosphate limitation Ochrobactrum intermedium LMG 3301 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 8.578333484 8.859629993 9.292235489 8.408196221 8.568059714 8.372464924 8.767303254 9.24195806 8.650944168 9.341887699 9.270841496 9.39059622 85689313 obgE Stress Radiation stress Erythrobacter sp. NAP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 9.66868191 10.05310273 9.833522503 9.483045009 9.746693348 9.757854947 10.11927031 10.19955999 206565629 gyrB other category gyrB Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 8.159846919 7.919049259 7.668302735 7.353753222 7.11078102 7.142758768 94313152 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 9.421874233 9.386553051 9.556005861 9.288600093 9.056879607 9.15601446 9.480252046 9.392448791 9.569484195 9.472077613 9.556981522 117999260 CadA Metal Resistance Cadmium Comamonas testosteroni KF-1 8.786512081 8.404077704 8.895091237 8.300050473 7.71642795 7.742967644 7.429995941 7.702660566 7.73372791 8.084808412 209520593 hrcA Stress Heat shock Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 9.257459197 9.4402914 9.188892308 8.870681727 8.660647461 9.417608668 9.706231686 9.292194923 9.347108591 8.966660957 9.137923033 9.119304904 159179737 PobA Organic Remediation Aromatics Aromatic carboxylic acid alpha proteobacterium BAL199 8.253269007 8.585233933 8.517204347 8.835361751 8.977905813 8.832265132 8.45204441 8.999961569 8.795973959 8.750673897 8.833616063 8.779857915 255020962 pstB Stress Phosphate limitation Acidithiobacillus caldus ATCC 51756 8.345040917 8.479433996 8.582859886 7.884074996 8.246724279 8.370450504 8.140076049 7.77024834 8.361656582 7.906094242 8.132923758 7.972307469 68230042 xylanase Carbon cycling Carbon degradation Hemicellulose Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.843898887 9.06113718 9.074745361 8.544254433 8.481894608 8.454216016 8.384082397 8.481457726 8.542738995 8.248409749 8.176439758 8.7032619 224603269 sigma_70 Stress Sigma factors Lutiella nitroferrum 2002 9.58385033 9.531166402 9.488187978 8.732409286 9.093369286 9.296265299 9.389887793 9.187941861 9.583902003 9.133379975 9.235024745 9.188725356 256685938 SMR_antibiotics Antibiotic resistance transporter Jonesia denitrificans DSM 20603 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 8.456874926 8.228081691 8.232614402 8.166192958 8.028144898 7.960590264 8.12518705 7.848618395 8.247634724 7.847357246 7.913240581 7.940687937 1912047 sigma_70 Stress Sigma factors Shewanella violacea superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella violacea; 9.710349708 8.826349202 9.974612448 9.778244518 9.615037475 9.80392018 9.644061712 9.349389769 9.483092582 9.537120766 91799285 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 9.3911759 9.163415587 9.376623319 8.981820153 8.670704416 8.561114956 9.01722768 9.238301639 9.022639155 9.40275156 9.355081305 9.317504693 82702217 pstB Stress Phosphate limitation Nitrosospira multiformis ATCC 25196 8.914249941 8.897088177 9.243150414 8.492987333 8.560853521 8.402412434 8.566602791 8.586114799 8.823768605 8.436911221 8.484038019 8.707691046 37726805 dsrB Sulphur sulfite reductase uncultured prokaryote 8.41846053 8.613884111 8.579972976 7.952863258 8.585206183 8.192112098 8.353613445 8.681753097 8.275456199 218290952 gdh Nitrogen Ammonification Alicyclobacillus acidocaldarius LAA1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 9.624709243 9.646709705 9.674504428 9.059250787 8.890129945 8.324144408 8.686459213 8.49021071 9.100499312 8.907175351 8.870875362 8.844799869 84694381 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8.52001805 8.539567095 8.518103112 8.192227071 7.940883153 7.876066513 7.772590292 7.705998331 7.953611877 7.65065477 7.591814111 7.931645364 78518845 CODH Carbon cycling Carbon fixation Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.312105511 8.487853488 8.623165022 8.349601039 8.305795275 8.257761012 8.472189862 8.433118401 8.516365428 8.250616741 8.178487015 7.97688277 219720269 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Stenotrophomonas sp. SKA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 10.02410393 9.804734627 9.792444118 9.356977404 9.10536161 9.306504706 9.688081464 9.110932887 9.54793406 9.639853943 9.43637792 148261385 NDEDFP_EPS Bioleaching EPS Acidiphilium cryptum JF-5 8.761231288 8.773990435 8.3017489 7.862599116 8.220868788 8.264103905 8.251372952 7.688095043 8.598979154 8.046939175 8.151293046 7.88395196 76558220 pimF Organic Remediation Aromatics Aromatic carboxylic acid Natronomonas pharaonis DSM 2160 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natronomonas;species:Natronomonas pharaonis; 9.318928543 9.2888998 9.208707552 8.895509485 8.890235369 8.847249427 8.922319202 8.938569079 9.098192821 9.212973105 9.258653064 9.280320814 39649237 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.016959067 8.806543267 9.147367218 9.497568454 9.509913369 9.083164005 8.928424221 9.528483735 8.894126914 9.095911256 8.955917915 9.3106732 99082486 alkB Organic Remediation Other Hydrocarbons Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8.499439665 8.699025601 8.426946651 8.055855296 8.214183329 8.53030289 8.496840924 8.343170181 8.604313398 8.287294654 8.500874125 8.50385857 15075129 nhh Organic Remediation Aromatics Nitoaromatics Sinorhizobium meliloti superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium; 8.360281902 8.659679296 8.77955164 8.947056719 9.112291292 9.111973963 8.652875307 9.227310161 8.309390386 9.041008018 9.290941646 9.233223706 63257585 atzA Organic Remediation Herbicides related compound Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 8.50418625 8.253545538 8.4493465 8.117392891 7.73967792 8.123470845 7.986606567 8.347377495 8.055021682 7.885968007 7.732593044 196189205 ChrA Metal Resistance Chromium Synechococcus sp. PCC 7335 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.568838496 7.757966584 8.409769904 7.727695331 7.668691869 7.591694294 8.101650893 7.82627784 194684874 SMR_antibiotics Antibiotic resistance transporter Proteus mirabilis HI4320 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 9.133216479 9.181947884 9.301981401 8.525790982 8.787768293 8.664590968 8.721740778 8.640326369 8.690137469 8.66804778 8.959059668 119873018 pstC Stress Phosphate limitation Pyrobaculum islandicum DSM 4184 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum islandicum; 8.792081612 8.018666088 8.12626438 7.857750688 7.765188436 8.397064599 8.091597544 7.92541712 7.752704214 8.077905453 7.757843762 77378421 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.52771988 8.839132881 8.482560961 8.036515707 8.401241772 8.60859432 8.352404558 8.171395939 8.381396998 8.564770782 8.150361079 117928082 pcc Carbon cycling Carbon fixation Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 8.36245026 8.434780193 8.436381951 8.791766428 8.655458808 8.874129031 8.776625361 9.262985107 8.495673126 9.017345384 9.432918898 8.977522418 120404320 SMR_antibiotics Antibiotic resistance transporter Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 9.412507237 9.412038198 9.499677751 8.829999768 8.857553004 8.631586129 8.767254033 8.580989824 8.783091359 8.494348756 8.475938094 8.932700629 148556631 katE Stress Oxygen stress Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 9.177213836 8.940282315 8.226885207 8.942734523 8.864937022 8.736370917 8.81779449 8.88197675 8.746025363 8.829442997 8.8123584 8.603634856 253577315 pstB Stress Phosphate limitation Paenibacillus sp. oral taxon 786 str. D14 9.272822853 8.749122225 9.325616985 8.371584766 8.137517819 8.161465454 8.047333618 8.40884562 46520017 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.170221986 8.260899587 8.039680056 8.351984004 8.233360809 8.078153465 8.341439317 8.658995911 8.440380978 8.615762094 8.587615379 8.357104281 83943424 CadA Metal Resistance Cadmium Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 9.436883389 9.599055892 8.461526404 8.341572927 8.366681506 8.274610173 8.221795237 219720495 Arylest Organic Remediation Aromatics Other aromatics Stenotrophomonas sp. SKA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 7.565529824 7.728515849 7.749699687 7.247686701 7.735148648 7.449755532 7.534905704 87284373 ahpC Stress Oxygen stress Synechococcus sp. WH 5701 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 9.884077066 9.571564887 9.31177114 9.6200473 8.728410765 9.336726952 10.03170714 9.728593368 9.702377314 9.202187111 9.33172275 9.400744422 187726873 pilin virulence pilin Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.339699545 8.723630758 8.449584776 8.15585604 8.40130938 8.636332355 8.684694113 8.466990858 8.57484653 8.034274569 8.373235992 8.12893135 99038658 ZntA Metal Resistance Zinc Silicibacter sp. TM1040 8.236642102 8.138639157 7.38514978 7.289420008 7.341300899 7.179822177 6.664397613 7.800836408 7.089922896 7.096870598 7.323462189 189345315 dsrB Sulphur sulfite reductase Desulfovibrio africanus superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 9.784384246 9.754416523 9.616433797 9.754194357 9.70951404 9.76522328 10.14139719 10.07623998 10.20565589 10.01625197 10.15240851 10.33120801 99081098 phoB Stress Phosphate limitation Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8.702100353 8.214546097 8.480370789 8.475094014 8.277979542 8.602872947 8.598120248 8.311328855 8.534056295 8.610038971 8.154150161 167647904 glnA Stress Nitrogen limitation Caulobacter sp. K31 8.631211085 8.955060699 8.625447773 8.387762017 8.403506833 8.761910985 9.202968883 8.528100958 8.764303352 8.360320571 8.371539736 8.255129423 46562231 nifH Nitrogen Nitrogen fixation Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 8.352864936 8.680283811 8.670642696 8.551067475 8.660476451 8.232383106 8.707862244 8.687966932 8.659209861 8.437365565 8.398896696 8.138771912 161160852 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 8.472394553 8.513237648 8.628419344 8.483345342 8.49883698 8.241554006 8.336701889 8.579774946 8.363440112 8.503449499 8.716908213 8.618255367 42475484 bphC Organic Remediation Aromatics Polycyclic aromatics Rhodococcus rhodochrous superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 9.315579734 9.514525227 9.753329614 9.73735625 9.713447034 9.374228697 9.553269552 10.15705257 9.532228977 9.791752664 9.504140598 9.903559394 89043253 xylanase Carbon cycling Carbon degradation Hemicellulose Oceanicola granulosus HTCC2516 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 9.066490643 8.681293514 8.413576746 8.456310551 8.19356525 8.366721407 7.84109302 8.168996712 8.227375282 8.271035717 8.360796667 8.149208649 84778341 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.185739551 8.639802313 7.821290283 7.972925804 7.474684704 7.897774127 8.508281675 8.536211914 8.280854973 8.323918577 264677185 pilin virulence pilin Comamonas testosteroni CNB-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.775364506 8.905541279 8.755350417 8.960664609 8.850777009 8.694585564 9.230963106 9.590543977 9.774343782 9.425358303 9.330087507 9.532827324 159894168 ppx Phosphorus Phosphorus utilization Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 8.641757586 8.476672656 8.609019529 7.644322241 8.252517558 8.23188253 8.57821957 7.674965497 8.352150877 7.953671331 7.917327461 8.00707735 94263094 sigma_70 Stress Sigma factors delta proteobacterium MLMS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 9.097141653 8.604265999 9.294221109 8.962965657 9.040220547 8.762009614 83816696 ZntA Metal Resistance Zinc Salinibacter ruber DSM 13855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 9.299301233 9.098205679 9.372728221 8.709751559 8.700771613 8.79963972 8.861912553 8.396438227 8.676508226 8.345506783 8.448392488 8.650577007 148240967 CopA Metal Resistance Copper Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.141174441 8.170569579 8.121484542 8.151243105 8.117655253 8.16831403 7.641266964 8.115393626 7.810937135 7.835554868 8.1986344 7.551112822 253998508 iro virulence Methylovorus sp. SIP3-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylovorus; 8.75635119 8.479918047 8.247470899 9.213598087 9.150352035 9.177907911 8.373172235 9.21089911 8.618520641 8.79102774 8.996600826 8.555810819 262206505 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 8.711493119 8.580399776 8.524462095 8.034588045 7.92736574 7.905929937 7.58027383 7.306269079 7.893689906 7.728548733 7.574971298 8.073869673 67084431 CopA Metal Resistance Copper Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 8.355884738 8.388307922 8.082132564 8.325791303 8.31534497 8.075716201 8.01785168 8.474532139 7.988625479 8.308221628 8.434201685 8.451773554 262310067 katE Stress Oxygen stress Acinetobacter lwoffii SH145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter lwoffii; 7.992172531 7.952712131 7.302734366 7.776878327 8.03957681 8.109778067 7.46539502 8.029898335 7.237173945 7.607709573 7.775395086 218221663 pcc Carbon cycling Carbon fixation Parabacteroides johnsonii DSM 18315 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides johnsonii; 8.130166395 8.246087079 8.311923957 8.525089922 8.477051557 7.884346116 8.29334758 8.235146871 8.240836335 8.53942005 8.21472198 37678745 sigma_70 Stress Sigma factors Vibrio vulnificus YJ016 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 6.964435705 7.093759413 188584300 ureC Nitrogen Ammonification Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 8.238563537 8.094163048 8.190065407 8.146281708 8.267583844 8.176876161 8.232908306 8.661609622 8.462789199 8.763701237 8.50564216 8.462717317 172041016 hrcA Stress Heat shock Corynebacterium urealyticum DSM 7109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium urealyticum; 8.452942352 8.08387833 8.303354131 8.349321577 8.25665852 7.913096382 7.971367191 8.394152434 8.028885706 8.281025595 7.970402642 8.194122589 71156382 FTHFS Carbon cycling Acetogenesis Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.178764284 8.504304837 8.346317103 8.423965535 8.613524227 8.340426449 8.051262719 8.513654463 8.1979453 8.356569794 8.178099764 8.234774109 78102121 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.663008767 7.595856612 7.60908074 7.498432116 7.784223323 7.810162019 7.46002386 7.715424769 120326592 ahpC Stress Oxygen stress Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 7.618921906 7.517249721 7.251472503 7.437917124 7.462387859 7.920235765 7.518912018 7.194074529 7.55474697 94470563 amoA Nitrogen Nitrification superkingdom:Bacteria; 8.411206918 8.156451508 7.608153007 7.534483641 7.445693227 7.382789592 7.583652222 7.933289284 7.725113716 7.381271371 7.681373276 219953642 pilin virulence pilin Anaeromyxobacter dehalogenans 2CP-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 9.161316121 9.378301991 9.07685462 8.602176551 8.69151676 8.891435444 9.11186815 8.651336512 9.280745675 8.699005757 8.862557132 9.045941065 259507144 cspB Stress Cold shock Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 8.85279469 8.398478493 8.334176792 8.885213662 8.83847317 8.491569226 8.802643268 8.648663228 8.672551094 8.712976781 8.578391638 221566131 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 9.736867515 9.549310757 9.730466552 8.689602217 8.715148724 8.594942733 8.523773901 8.617090498 8.8414309 8.7329422 9.057927917 73763106 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.546603768 8.438025239 8.127539697 8.32829102 8.035160046 8.17928082 8.438836095 8.429406531 8.678713279 8.921212581 8.594390749 114228027 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Alkalilimnicola ehrlichei MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 8.739406398 8.290346076 8.375016524 8.667546132 8.383520383 8.306646391 8.784041443 8.750071986 8.73758475 8.523305093 8.382502219 8.512193927 118473418 pnbA Organic Remediation Aromatics Nitoaromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.488473635 8.124702583 8.302475168 8.56933079 8.371694134 8.351797616 8.090777705 8.4827471 8.20832055 8.289771601 8.485041603 7.998798669 269836760 sigma_70 Stress Sigma factors Sphaerobacter thermophilus DSM 20745 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 9.428980366 9.300345686 9.340252214 8.58148029 8.556270584 8.962493614 9.241453661 8.842587194 9.051677689 8.85229043 8.947771317 8.887101891 62085690 gyrB other category gyrB Gordonia sputi superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 8.316930588 8.280112868 8.098215667 7.888037567 7.958521892 8.037202761 7.809910984 8.098637581 8.237633128 8.00729995 149818164 sigma_70 Stress Sigma factors Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 9.569950283 9.378130613 9.426031811 9.166689377 9.007097175 8.746940244 8.912567121 9.01227222 9.383837868 9.351248113 9.374994773 9.307636771 91779734 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.998872296 9.436480483 8.985327709 8.231534114 9.191465943 9.611672396 9.126847293 9.219990089 8.854651654 9.233104788 9.161829977 47574794 ZntA Metal Resistance Zinc Rubrivivax gelatinosus PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 8.260245451 8.247222375 8.368145679 8.216293286 8.440979117 8.064733106 8.483611041 8.23893066 8.498375446 8.793185284 8.229861733 23305801 phenol_oxidase Carbon cycling Carbon degradation Lignin Phaeosphaeria spartinicola superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria; 8.881169956 8.931854708 8.106450381 8.074167348 8.107578774 7.797836634 7.873207197 8.373210236 7.973246481 8.200053283 8.306173804 14325430 linB Organic Remediation Pesticides related compound Thermoplasma volcanium GSS1 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermoplasmata;order:Thermoplasmatales;family:Thermoplasmataceae;genus:Thermoplasma;species:Thermoplasma volcanium; 9.051745036 8.731945074 8.913397706 8.577649588 8.386464594 8.346086381 7.980435182 7.964305762 8.039159297 8.254052413 8.228527155 8.481395287 91978281 phn Organic Remediation Herbicides related compound Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.440923207 8.452841335 8.418405429 8.409010871 8.322367 8.017521135 8.01224435 8.398533495 8.34011545 8.187091378 8.200261054 7.979936181 83369532 CODH Carbon cycling Carbon fixation Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 9.377097874 9.190868099 9.431564962 9.565137542 9.567340016 9.454741244 9.109760273 9.813071171 9.257508698 9.271034635 9.218895882 9.444947653 62512309 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9.030154278 9.3828583 8.93522212 9.471309012 9.349849675 8.925899673 9.424321943 9.368017509 9.004801508 9.337195943 9.099061449 9.083687121 218564160 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 8.891372293 8.974502821 8.996305936 8.508212602 8.549648748 8.345900534 8.443861219 9.063697599 8.61735261 8.966948232 9.1656939 9.212868176 109645564 nrfA Nitrogen Dissimilatory N reduction Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 10.1460694 9.652529689 9.243737007 9.907210449 9.628407948 9.158244105 9.883977671 9.793543714 10.13676748 9.484864235 9.238714129 9.372169576 117991693 tfdA Organic Remediation Aromatics Chlorinated aromatics Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8.246046887 8.503148196 8.128084024 7.872416573 7.781792831 7.65462551 7.342599392 7.806448704 7.877135678 7.710276371 229488351 glnA Stress Nitrogen limitation Rhodococcus erythropolis SK121 8.135373311 8.140636829 7.746475753 7.793868554 8.007022634 8.275616792 7.873806143 8.446606059 7.895466762 7.847475415 7.84392369 153892024 Catechol Organic Remediation Aromatics Other aromatics Opitutaceae bacterium TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 8.945812938 8.910851667 8.706790128 8.584375486 8.39241489 8.632662682 8.610838539 8.227371039 8.529717303 8.362478635 8.263689969 8.4164852 67927347 xylA Carbon cycling Carbon degradation Hemicellulose Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 8.454885358 8.013927466 8.198439914 7.644510494 7.572274534 7.826859126 7.869068784 7.548555623 8.074391536 7.579563275 7.547107356 7.495417165 172041578 srt virulence surface protein Corynebacterium urealyticum DSM 7109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium urealyticum; 9.721611649 9.642777929 9.682050149 8.993959972 9.029665064 9.02904947 9.53738889 9.01935021 9.608990292 9.002171758 8.931688015 9.216760262 71366297 pulA Carbon cycling Carbon degradation Starch Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.854452819 8.851692356 8.434385496 8.664389916 8.4803139 8.585108334 8.587291198 8.537472378 8.337900755 8.472581668 8.640906317 8.52601314 257796696 AceB Carbon cycling Carbon degradation others Desulfohalobium retbaense DSM 5692 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium;species:Desulfohalobium retbaense; 8.838250624 8.818241854 8.852492126 8.1309925 7.884233838 7.962966746 7.956923057 8.167697594 8.13079112 7.934446984 8.324902405 158425516 atzD Organic Remediation Herbicides related compound Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 8.220892128 8.107930565 8.374550434 7.728926394 7.759464973 7.652678004 7.634225404 7.642737533 7.661106878 7.65286289 7.591842181 7.648559406 171911906 catB Organic Remediation Aromatics BTEX and related aromatics Verrucomicrobium spinosum DSM 4136 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Verrucomicrobium;species:Verrucomicrobium spinosum; 9.694108902 9.744253746 9.292602797 9.229408678 9.149339541 8.988225139 9.179969791 9.231000257 8.956254478 169187487 nmoA Organic Remediation Aromatics Nitoaromatics Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 8.544155089 8.633902796 8.495278287 8.463469663 8.377242643 8.173023648 8.316711834 8.219687438 8.421629045 8.29145133 8.112254284 8.21973015 16412063 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Listeria monocytogenes superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria; 8.619055821 8.415138037 8.689636774 8.189366522 8.279984628 8.12135329 8.005662961 7.908553081 8.393678033 8.167110065 7.935602083 8.319164777 27314535 CadA Metal Resistance Cadmium Staphylococcus epidermidis ATCC 12228 8.613294168 8.471775338 8.987577331 8.13215362 7.981480021 7.99086058 8.523588164 8.489419054 8.160653803 8.565269305 8.377449041 119963252 TerC Metal Resistance Tellurium Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 8.311397678 8.189632087 7.983627334 7.539978581 7.336816325 7.275556969 7.400997943 7.348504803 7.916004308 7.583892986 7.031296339 7.549261126 158329939 narH Stress Oxygen limitation Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 9.297511811 9.196566653 9.17276616 8.480888265 8.442903621 8.628210177 9.03160126 8.669467761 9.410506679 8.453682361 8.312527666 8.507493829 161158917 pcpB Organic Remediation Herbicides related compound Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 9.105721125 9.031031 8.830308193 9.070404871 9.023613251 8.790082171 9.457503954 9.270257759 8.742825426 8.931328753 9.018020435 8.597512513 117988777 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.743428735 7.751290004 7.960833405 7.600975849 8.015606493 7.784587025 7.983753792 8.00952326 7.893332604 91685897 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.182908941 8.212121867 8.426422881 7.997611459 7.861344679 8.070186692 7.88593646 7.721765232 8.208697509 7.895717409 7.933565823 8.027188434 84685190 CopA Metal Resistance Copper Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.068519109 7.880567822 8.120459636 7.923257412 8.144649343 8.197396006 8.063512255 8.132952501 7.926319701 7.746107493 262203571 narI Stress Oxygen limitation Gordonia bronchialis DSM 43247 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 8.43018367 8.319529294 8.156347178 8.401379164 8.451791496 8.902300923 8.729657485 8.583833595 8.634775542 164604311 clpC Stress Protein stress Clostridium bartlettii DSM 16795 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bartlettii; 9.311013846 9.237155624 9.282297711 8.779572296 8.695161984 8.769260718 8.358247136 8.320406696 8.208282486 8.480623126 8.850877907 21219612 linB Organic Remediation Pesticides related compound Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 7.965814197 8.053813989 7.499908929 7.609239307 7.733375877 7.522190042 7.777507659 8.041846642 7.939275964 7.662685218 7.779478418 238696652 pstA Stress Phosphate limitation Yersinia kristensenii ATCC 33638 8.15335853 7.926126946 8.358824156 7.688555456 7.53124347 7.515488312 7.493306348 7.071377983 7.883282912 7.528327614 7.477930255 218529041 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 7.398023077 7.486256914 7.424372685 7.183866054 6.890188709 7.705025713 7.268031555 7.425189348 158523904 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 10.22280524 10.05046236 10.25375595 9.437036011 9.297007594 9.486636051 9.36839238 8.966180187 9.714848558 9.550073104 9.5884641 9.447224633 iegcoxL40 CODH Carbon cycling Carbon fixation 9.033415465 9.255783827 9.506703855 8.961591723 9.008141341 8.734815264 8.722666254 9.117967189 8.988390235 9.233906723 9.008750508 9.199075276 37522378 linB Organic Remediation Pesticides related compound Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 8.735358247 8.594050968 8.862336705 7.677000553 7.967522502 7.646595825 7.136885818 7.338637779 7.674696485 7.53880703 7.723095899 170937692 gyrB other category gyrB Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 9.472087439 9.42701292 9.326293063 9.06500646 8.624379834 8.834078442 8.619726272 8.723783308 8.689317321 8.759369724 8.993211538 212637500 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 7.060484548 7.117526714 7.340173426 6.99149006 7.549915043 6.99422824 6.890996179 6.920915132 218891354 CadA Metal Resistance Cadmium Pseudomonas aeruginosa LESB58 9.033151578 9.107811468 9.005359084 9.412896913 8.928118467 8.741099043 218662195 SMR_antibiotics Antibiotic resistance transporter Rhizobium etli IE4771 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.620673224 8.569443063 8.400785908 7.84158461 8.249221704 8.479274071 7.793539498 8.504644434 8.091970108 8.295030085 7.990024667 116694497 catechol_B Organic Remediation Aromatics Other aromatics Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.502865593 8.30541449 8.25279841 8.214381276 7.932163971 7.808621083 8.267113962 8.171489785 8.243490418 8.263681367 8.205026137 218273991 ara Carbon cycling Carbon degradation Hemicellulose Roseburia intestinalis L1-82 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia intestinalis; 9.289133243 9.11943697 9.093565793 8.549473262 8.528469271 8.302392326 8.319546868 8.747786172 8.446513742 8.618121473 8.502119663 8.78592365 262203785 pstA Stress Phosphate limitation Gordonia bronchialis DSM 43247 9.123795084 9.348644133 9.262950839 8.961410553 8.819958608 8.675692271 8.522051688 8.78407282 9.051114461 8.772162921 8.75979233 8.983897151 256803101 B_lactamase_C Antibiotic resistance Beta-lactamases Streptomyces viridochromogenes DSM 40736 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 9.532547356 9.171227456 9.257524037 8.808244257 8.867743565 8.946776854 9.10054052 8.591517794 9.248646344 9.030318517 9.227246123 9.174138591 269836640 sigma_24 Stress Sigma factors Sphaerobacter thermophilus DSM 20745 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 9.37361005 8.403858255 8.336996086 8.162245878 8.325692952 8.437883216 8.02713778 8.293285004 8.361451854 8.235010965 8.273743864 8.212486253 189189036 pheA Organic Remediation Aromatics Other aromatics Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 8.64979739 8.535777345 8.643269907 8.329815178 8.445207642 8.30341972 8.314396861 8.536236673 8.718717966 8.542525545 8.392702095 8.474645751 84382181 atzA Organic Remediation Herbicides related compound Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 9.064875612 8.959051582 8.984495706 8.44324161 9.002967689 9.054737367 9.42945333 8.27639927 9.357150131 8.521344535 8.585445719 188996650 CopA Metal Resistance Copper Sulfurihydrogenibium sp. YO3AOP1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Hydrogenothermaceae;genus:Sulfurihydrogenibium; 8.636767994 8.383886345 8.583601219 7.81264611 7.796761661 7.663402165 6.976556066 7.679499105 7.567280288 7.85788771 8.089168814 270352791 pilin virulence pilin Burkholderia sp. CCGE1002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 10.02885851 9.907617611 9.765825587 9.620077146 9.602630852 9.504484324 9.282465608 9.484564888 9.731833614 9.51896795 9.789404155 9.827389457 196242977 ChrA Metal Resistance Chromium Cyanothece sp. PCC 8802 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 9.109204022 9.032561664 9.078456012 8.706468053 8.585672607 8.398758731 8.219048573 8.090735261 8.333020234 8.27710206 8.697505327 54026163 limEH Carbon cycling Carbon degradation Others Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 8.826973274 8.817321406 8.683766861 8.923769816 8.846050248 8.915970276 8.667669364 8.83533183 8.538489094 8.804185279 8.821795716 8.708819521 220916381 ahpC Stress Oxygen stress Anaeromyxobacter dehalogenans 2CP-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 9.763856191 9.840732661 9.867718459 9.171582282 9.137273674 8.9899259 9.105914162 9.066304456 8.869382767 9.114368742 9.07745315 9.375836065 256831676 fnr Stress Oxygen stress Jonesia denitrificans DSM 20603 8.349602653 8.232384792 8.708571614 8.678139082 8.686600263 8.449719445 8.915746239 8.699903354 8.625290467 8.747636857 8.476712724 262274815 AceB Carbon cycling Carbon degradation others Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;species:Grimontia hollisae; 8.129352208 8.419170511 8.55270945 8.442724517 8.000252817 8.252025382 8.211458148 8.308106531 8.153315887 8.31458177 7.72347678 116633906 narG Nitrogen Denitrification uncultured bacterium 7.60439353 7.81802495 7.83578553 7.879715277 7.599941896 8.177208067 7.497368973 7.58270042 7.64378319 260429877 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 8.911847762 8.949340449 8.870417879 8.938456098 8.975913696 8.882685143 9.133026152 9.153764551 8.769007384 8.942375092 9.244211514 8.935831594 157914110 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 8.855320265 8.821033055 8.582303541 9.112141744 8.92445115 8.624772445 9.210110353 9.222717129 8.879565449 9.142754928 9.103961705 8.803941343 69935188 nagG Organic Remediation Aromatics Aromatic carboxylic acid Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 10.31052798 10.19079194 10.20207467 10.41871347 10.49377596 10.20543312 10.70993188 10.46257666 10.39304828 10.28294298 10.48194166 10.29433772 73542591 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 9.178115267 9.051771073 9.130323704 8.662240648 8.439808853 8.526475165 8.36298499 8.366744527 8.233327706 8.566116728 8.754593402 8.784691786 84714948 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8.726303306 8.518001798 8.30236266 8.518706157 8.353088058 8.583912776 7.934773885 8.405345468 8.283812111 8.425364931 8.315902567 8.089340603 111614907 ChrA Metal Resistance Chromium Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 7.551779208 7.310040964 7.467178104 7.89497506 7.403674655 8.244279761 7.392187547 7.579187351 7.155736747 160917676 narG Nitrogen Denitrification uncultured bacterium 8.056313607 7.911685978 7.481322196 7.625211197 7.887510733 7.368012658 116670180 gyrB other category gyrB Arthrobacter sp. FB24 8.907097368 8.843226398 8.558494054 8.729556037 8.801249907 8.705687719 8.904681604 8.745082798 8.489207151 8.697789135 8.673693801 8.706031282 219949839 fnr Stress Oxygen stress Methylobacterium nodulans ORS 2060 10.3776406 10.23401745 10.41551517 9.793294975 9.94266734 10.13875677 9.773602048 10.01272846 9.739074841 9.855476201 10.32626502 10.0853357 91686217 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.428783703 8.304244773 8.444053001 8.428371756 8.226216599 7.831690964 8.156322803 8.066142754 8.178619303 7.92811009 8.134258809 222082761 pcaG Organic Remediation Aromatics Other aromatics Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 9.103641341 8.867971476 9.071693942 8.623501343 8.552921918 8.288411923 8.634848192 8.881240344 8.889999525 8.57255965 145246644 chnB Organic Remediation Other Hydrocarbons Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8.282326358 7.956857693 7.630714864 7.365642349 6.996700474 6.692104716 149125065 Catechol Organic Remediation Aromatics Other aromatics Methylobacterium sp. 4-46 8.393521168 8.072680871 8.379173166 8.142549392 8.063239581 7.917807504 8.039300667 8.484378357 8.36519772 8.232715916 8.229405885 8.280501934 88930670 amyA Carbon cycling Carbon degradation Starch Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 8.962769512 8.824253961 8.986613101 9.010785984 8.901017633 8.457431825 8.855444241 8.89919182 8.901556911 8.906113186 8.923486055 8.602646508 238755683 AceB Carbon cycling Carbon degradation others Yersinia ruckeri ATCC 29473 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia ruckeri; 8.097597979 7.896015296 7.966676538 7.131850068 7.103914369 261753278 fnr Stress Oxygen stress Brucella suis bv. 3 str. 686 9.698341742 9.607553149 9.722297841 9.009914689 9.084904208 8.731425665 8.712567798 9.062787237 8.914607651 9.255955825 9.360401537 9.186419559 118685870 proO Organic Remediation Aromatics Other aromatics Marinomonas sp. MWYL1 9.572473742 9.425098788 9.5840455 8.939863416 8.843060184 8.774872356 8.838723396 8.791503534 8.861458743 8.763222523 8.807900691 9.205885268 116067604 sigma_70 Stress Sigma factors Synechococcus sp. RS9916 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.160817112 8.157188344 7.943580152 8.171630088 8.382019784 8.106874775 8.208696271 8.103677346 8.243932082 8.48515305 8.256795903 148239880 sigma_70 Stress Sigma factors Synechococcus sp. WH 7803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 9.332684436 9.04696541 8.853158516 9.827422202 9.724823356 9.4343757 9.178179052 9.770190594 9.59559681 9.252322566 9.240869444 8.923912205 163857596 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 8.834256467 8.867090923 8.493168006 8.287441005 8.132681999 8.229475869 8.242139263 8.430695125 8.147901099 8.505368282 8.611562859 8.45756119 62512300 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.669374475 8.174241771 8.853117247 7.715049216 7.620428319 7.409787984 7.796134671 7.657309565 8.000382937 7.707979693 257465712 amyA Carbon cycling Carbon degradation Starch Actinobacillus minor 202 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus minor; 8.968215923 8.866776606 8.915848145 8.441064959 8.217205977 8.28367084 8.01911265 8.096514843 8.196861074 8.086655235 8.120947207 8.468260402 111224155 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 9.346091696 9.341469518 9.273120519 8.866380921 9.271822819 9.289621183 9.348591442 8.711469305 9.576394028 9.344859281 9.467368215 9.45986406 91802740 CopA Metal Resistance Copper Nitrobacter hamburgensis X14 8.519951156 8.794821362 8.765917325 8.285052564 8.303841679 8.419090788 8.506790124 8.32130802 8.537649975 8.293029866 8.115252359 8.316677848 151362106 nmoA Organic Remediation Aromatics Nitoaromatics Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 8.370555808 8.728505132 8.405529015 8.704034074 8.833846444 8.657161002 8.617583614 9.128617393 8.534145239 8.860382475 8.442031415 8.687145086 116697217 phoB Stress Phosphate limitation Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 9.462506512 9.454672072 9.49474578 8.936499678 8.731647983 8.742458437 8.677673919 8.586381354 8.852177603 8.582846805 8.646250312 8.74856219 188583366 sox Sulphur Sulphur oxidation Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 10.41919258 10.39276874 10.52556511 10.11545934 9.948808446 9.874885214 10.42360547 9.971473843 10.68313146 10.01029017 10.04150113 10.05814379 222524287 sigma_24 Stress Sigma factors Chloroflexus sp. Y-400-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus; 8.449898299 8.618727321 8.109179695 7.319009582 7.342676132 7.703006461 8.423488656 7.599237026 7.736970658 7.606288509 7.669532905 68514801 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 8.362229031 8.152100728 7.352949311 7.467845169 8.072027494 8.376940643 7.860536498 8.437386342 7.799097675 7.639340351 7.478634805 104779928 atzB Organic Remediation Herbicides related compound Pseudomonas entomophila L48 8.717727842 8.256156413 8.651901062 8.308187941 8.463779386 8.312124389 8.260361066 8.710276083 8.468933552 8.588042528 8.383252566 37676032 pstB Stress Phosphate limitation Vibrio vulnificus YJ016 8.508703423 8.433076567 8.735992293 8.533205517 8.51524986 8.880723457 8.455264951 8.585697509 8.563919496 8.586417442 8.908512922 8.578081993 169005496 nmoA Organic Remediation Aromatics Nitoaromatics Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 8.886526994 8.670437469 8.258523055 8.256631591 8.423463611 8.13686506 8.065934995 8.357984892 7.999824417 8.190606198 8.019317554 218321694 pilin virulence pilin Vibrio splendidus LGP32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 9.138392675 9.241693902 9.381907936 8.641013872 8.561153102 8.137444897 8.253514717 8.164488307 8.157623375 8.346960117 8.645440944 226292911 phoA Stress Phosphate limitation Paracoccidioides brasiliensis Pb18 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides;species:Paracoccidioides brasiliensis; 9.148799744 9.333063429 9.24026835 9.541137549 9.401727523 8.846130101 9.579486222 9.596200386 9.004486522 9.569784483 9.354291566 9.118126879 134100191 TerC Metal Resistance Tellurium Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 10.08225132 10.13128264 10.04975988 8.964728933 9.655461699 9.641915335 10.03321774 9.140017865 9.904210122 9.21451078 9.417013919 9.521191521 262208756 iro virulence Comamonas testosteroni CNB-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.530762254 8.573615411 8.422766753 8.337384276 7.849232631 8.000104353 8.19185756 8.094731548 8.416013975 8.33449451 8.397633506 8.055243697 90336192 CadA Metal Resistance Cadmium Aurantimonas sp. SI85-9A1 9.14745328 8.963310654 8.76319468 8.738258047 8.751199886 8.707578158 8.837777914 8.869634282 8.97734673 9.085932915 9.096684563 8.947709117 206688266 pstB Stress Phosphate limitation Rhodobacterales bacterium Y4I 8.793508104 8.667767533 8.713855935 8.088326176 8.094853491 8.357187196 8.293102707 7.991163307 8.181966782 8.252968962 8.324652084 242220107 phenol_oxidase Carbon cycling Carbon degradation Lignin Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 8.265946074 8.392687074 8.420297684 8.398294287 8.296563452 8.335691163 8.457129008 8.562116318 8.338937205 8.844469127 8.584095872 8.305555312 113901773 gyrB other category gyrB Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 9.344021584 9.498590511 9.203110336 8.583379305 8.646267711 8.77883264 8.677532386 8.459163148 8.796418074 8.498598803 8.699491623 8.790911032 255268765 ppk Phosphorus Phosphorus utilization Bryantella formatexigens DSM 14469 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;species:Bryantella formatexigens; 8.654522982 8.50638334 8.653989707 8.036687727 7.826493225 8.229961854 8.341570661 8.242820247 7.99443324 7.644775383 8.182544414 220925923 ChrA Metal Resistance Chromium Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 8.609116074 8.767314975 8.364116234 8.69629493 8.496185494 7.999012501 8.666885929 8.590927392 8.571531301 8.418332107 8.367184993 7.974716664 90023622 endochitinase Carbon cycling Carbon degradation Chitin Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 8.652800907 8.412553204 8.618427339 8.204551962 8.029877582 7.999991403 8.265766037 8.207592887 8.694058545 8.398269353 8.119898238 8.198161568 84388196 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 8.51597883 8.334505644 9.039580325 9.130472825 9.06954219 8.709543005 9.283498864 8.690301502 9.14939974 9.221026041 9.440566647 116621312 sigma_24 Stress Sigma factors Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 8.493385635 8.468808122 7.582941767 7.55558738 7.653562747 7.752938373 7.352215561 7.422321285 7.368579153 7.485155784 67084896 nahA Organic Remediation Aromatics Polycyclic aromatics Azotobacter vinelandii AvOP 10.49509975 10.28558691 10.43805825 10.05030519 9.943311587 9.266313735 110349314 integrase_tyrosine Bacteria phage REPLICATION Aeromonas phage phiO18P order:Caudovirales;family:Myoviridae;genus:P2-like viruses; 8.992334756 9.074062276 8.869014636 8.871254775 9.117226241 9.047596879 8.922873117 9.458059268 8.973829179 9.31020295 9.091852401 9.166872384 148500711 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.844968976 8.601133542 8.841601823 7.866289116 8.03286651 8.216281984 8.448661958 8.002210004 8.721376237 8.079024868 7.715589375 7.731419049 99035807 phn Organic Remediation Herbicides related compound Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8.786487961 8.704082743 8.724050059 8.40790475 8.042649673 8.277323848 8.163080687 8.0981723 8.203071704 8.01953266 8.017866095 8.465168237 149912898 grpE Stress Heat shock Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.810928205 8.811836153 8.914313163 8.474826512 8.064434138 7.960089157 8.959113246 8.398958934 8.450819209 8.460660119 218148962 cytochrome Energy process Energy process Desulfovibrio salexigens DSM 2638 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio salexigens; 8.821443803 8.476489726 8.940784178 7.969635072 8.318080232 7.834051648 7.446184371 7.166545566 7.868108132 8.080257617 7.901735654 8.031105595 91782262 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.0952168 8.35202498 7.547978384 7.852516905 8.016889031 7.949851357 7.864455649 8.143732318 7.486915054 7.766697659 7.45021212 83589031 ctsR Stress Protein stress Moorella thermoacetica ATCC 39073 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Moorella;species:Moorella thermoacetica; 8.76557048 8.666720805 8.862284122 8.500692658 8.456664041 8.298639109 8.204359579 8.532250207 8.430176041 8.447137974 8.194891011 8.403351312 67914531 TehB Metal Resistance Tellurium Chlorobium phaeobacteroides BS1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 8.529023761 7.946574234 8.184834302 8.024060439 7.553026092 7.784237117 7.32013725 7.470968959 7.799523282 7.203975183 7.71592167 7.632236089 108772698 CopA Metal Resistance Copper Mycobacterium sp. MCS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 9.365306986 9.285790634 8.897868819 8.986798437 9.063978399 9.033964328 9.128549104 9.146910011 9.388957199 9.741765745 9.321668695 83840579 sox Sulphur Sulphur oxidation Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 9.020325556 8.903031693 9.033066684 8.248047895 8.29273167 8.346597941 8.229626902 8.160107079 8.013759751 8.138100641 8.1585626 8.48690685 148507267 alkB Organic Remediation Other Hydrocarbons Mycobacterium tuberculosis H37Ra superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 10.2858205 10.17578863 10.41747096 10.29714106 10.03656333 9.568722981 10.00265887 10.50128986 10.12081459 10.36577369 10.28863697 10.44058059 237802004 cytochrome Energy process Energy process Pseudomonas syringae pv. oryzae str. 1_6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 8.389599998 8.288207534 8.055841315 8.114938421 8.396144463 7.743786035 8.307361826 7.893024641 8.39514052 8.359210781 7.804083535 146323215 trzN Organic Remediation Herbicides related compound Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 8.281457214 8.353570005 8.120025243 7.829931349 7.838267379 8.01223018 7.867402941 8.213112934 8.031104579 8.235993143 8.352556037 8.395813381 226310788 ahpF Stress Oxygen stress Brevibacillus brevis NBRC 100599 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus brevis; 8.45092809 8.348943798 7.979194011 8.248501803 8.520456124 8.161759204 8.397650568 8.18843301 8.070207279 8.300475498 89317011 pcaG Organic Remediation Aromatics Other aromatics Mycobacterium flavescens PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 9.148384032 9.385532832 8.901442332 9.427471718 9.288856126 9.195557956 9.419424228 9.51121648 9.185486957 9.545660924 9.38092082 9.151540541 89345262 sigma_24 Stress Sigma factors Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 8.50754016 8.343050402 8.778657045 8.322620681 8.086384006 8.18332422 8.184395199 8.588604283 8.195327925 8.116794528 8.037674984 197774943 AceB Carbon cycling Carbon degradation others Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 8.908020044 8.999306231 8.883605842 8.349754534 8.363400681 8.258070701 8.814511587 8.257992602 8.355113733 8.413764016 8.184366344 262171064 endochitinase Carbon cycling Carbon degradation Chitin Vibrio mimicus MB-451 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 8.057777172 7.978713025 8.386861805 7.360566595 7.22310267 7.306203796 6.844575229 7.206916969 158433460 ChrA Metal Resistance Chromium Eubacterium dolichum DSM 3991 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichi;order:Erysipelotrichales;family:Erysipelotrichaceae;species:Eubacterium dolichum; 9.01022084 8.950199703 8.889507155 8.091654246 8.369730074 8.348526449 8.566360375 7.812483665 8.472342255 8.254077223 8.144141542 8.448773897 146451005 cellobiase Carbon cycling Carbon degradation Cellulose Lodderomyces elongisporus NRRL YB-4239 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Lodderomyces;species:Lodderomyces elongisporus; 6.602276597 7.186252511 7.049748914 7.350870951 116694493 pheA Organic Remediation Aromatics Other aromatics Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.645771667 8.556742658 8.566370674 8.075499144 8.288990025 8.405213177 8.668436654 7.714640409 8.951897299 8.319850553 8.040336272 8.30348435 158317259 fnr Stress Oxygen stress Frankia sp. EAN1pec 8.630457045 8.827038377 8.889887992 8.121529022 7.779294103 8.263981132 8.657486778 8.199223135 8.477149566 8.312315774 8.340613442 8.387041856 224605749 AceA Carbon cycling Carbon degradation others Natrialba magadii ATCC 43099 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natrialba;species:Natrialba magadii; 8.784713115 8.436012071 8.589650316 7.976449774 7.903576655 7.945985598 7.770079042 8.180254722 8.103565037 7.771761035 8.065181786 78513569 BADH Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.239585418 8.037781337 7.685511954 7.468338359 7.694289966 8.251556722 7.451528716 7.536588675 7.852343655 7.880438126 268591019 narH Stress Oxygen limitation Providencia rettgeri DSM 1131 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rettgeri; 8.2567326 8.213998855 7.875286749 7.591495878 7.522808754 7.045642643 7.228604638 7.643413003 7.825664386 7.389153913 7.641965774 219859801 xylA Carbon cycling Carbon degradation Hemicellulose Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 8.199881983 8.020943812 8.174056781 7.796462881 7.544122102 7.366281338 7.478698589 7.809321647 7.835606699 7.34716355 7.66123434 118473986 ureC Nitrogen Ammonification Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 10.30978012 10.22952506 10.40469566 9.897111757 9.739681594 9.417060921 247547523 Tet Antibiotic resistance other Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 9.703521521 9.617965204 9.991344286 8.934550269 8.941371175 8.77804378 8.707686104 8.671137979 8.722656978 8.921362288 9.065098867 9.285037347 227348748 katA Stress Oxygen stress Corynebacterium pseudogenitalium ATCC 33035 9.333051146 9.240848832 9.507482515 9.104478282 9.045023095 8.739846848 9.270118975 9.326645816 9.080331406 9.304813583 8.838114228 9.247119508 212531831 BpH Organic Remediation Aromatics Aromatic carboxylic acid Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 9.11644812 8.733159879 9.199695643 8.367284946 8.159511941 8.138043908 8.222843734 7.987655225 8.088384778 8.165394056 8.211927505 8.466802647 94311539 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.819321508 8.878769823 8.854890285 8.66176534 8.787102401 9.053368087 7.676780697 9.089507036 8.389175662 8.381126352 8.563533206 116751190 CadA Metal Resistance Cadmium Syntrophobacter fumaroxidans MPOB 8.984258141 9.288624932 9.288666285 8.555269502 8.548232673 8.447888418 8.627523676 8.307943269 8.334400106 8.591426048 167568139 sigma_24 Stress Sigma factors Burkholderia oklahomensis EO147 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia oklahomensis; 8.964850703 8.834302792 8.544962143 8.559907135 8.506491842 8.585323128 9.065041239 9.022440272 8.967957459 8.626728807 8.719243674 8.877801736 264672506 iro virulence Caulobacter segnis ATCC 21756 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 8.32288377 8.640637931 8.34932684 7.903074227 7.704621832 8.039760963 8.491269783 7.932421676 8.30165843 8.007736144 7.649815561 7.863323359 220919393 hydrogenase Energy process Energy process Anaeromyxobacter dehalogenans 2CP-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 8.702776052 8.713316029 8.732818946 8.719908442 8.692273236 8.517371694 8.762709036 8.818142117 8.591560835 8.878013592 8.675242215 8.611172641 118733193 pcc Carbon cycling Carbon fixation Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.994477863 9.107343474 8.500828094 8.669539648 8.886720341 9.041042006 9.645182577 9.158456946 9.032478354 8.795843498 8.977939157 8.889488764 150010130 gyrB other category gyrB Parabacteroides distasonis ATCC 8503 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides distasonis; 8.280177126 8.621622646 8.184477662 7.9670692 8.906642555 8.653308767 9.010289229 8.642001921 8.828548034 8.541026767 763399 dehH109 Organic Remediation Chlorinated solvents Xanthobacter autotrophicus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter; 9.474523473 9.411237128 9.370084376 9.66156453 9.77834951 10.07908016 9.772813014 9.881237571 9.78660713 9.649407808 10.19558903 9.73531268 125498899 ctsR Stress Protein stress Streptococcus sanguinis SK36 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus sanguinis; 9.548432727 9.266275212 9.410921661 9.389782305 9.014870949 8.508481463 9.187234385 9.289779683 9.183394214 9.021829484 8.884885042 8.788000765 262276141 pstC Stress Phosphate limitation Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;species:Grimontia hollisae; 8.783098552 8.853137175 8.239389775 8.93393779 8.900011431 9.196159911 8.8013734 8.404171445 8.457276397 8.444003848 8.187691016 151583233 ArsC Metal Resistance Arsenic Opitutaceae bacterium TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 8.303475713 8.316199058 8.409937546 7.534023088 7.542261515 7.698900788 7.678241522 7.404549711 8.017690834 7.387626465 7.721743671 7.880554128 226235517 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 8.953365425 9.310968824 8.748762582 8.909051537 9.450800155 9.272835049 8.698158146 9.201016102 9.345197709 9.357098086 9.28965987 224610357 APS_AprA Sulphur adenylylsulfate reductase Thioalkalivibrio sp. K90mix superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 7.990222155 8.07454868 7.978336572 7.64869414 8.224395505 8.081308305 8.161466487 8.303514006 89052885 alkB Organic Remediation Other Hydrocarbons Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 7.903659101 8.049785781 7.913383311 8.069879334 8.112826838 8.239254962 7.808513499 8.183268168 223693967 ArsC Metal Resistance Arsenic Desulfobacterium autotrophicum HRM2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium;species:Desulfobacterium autotrophicum; 9.622249008 9.469070572 9.8946562 9.208999146 9.676478451 9.157705827 9.170289096 9.316327926 9.560063719 9.399851743 9.544499653 9.44770245 46850276 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.177656087 8.293004365 8.086494833 8.140277316 8.241242313 8.200404806 8.24471841 8.437241508 8.54136123 8.591806032 8.207715225 8.01879283 118661466 nagI Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 9.368769925 9.894111311 9.45930171 8.937819328 9.012462744 9.623520824 10.09361233 9.623114529 9.573392775 9.237165553 9.252150072 9.454953628 187922786 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8.86281422 8.359908119 8.339502021 9.016311204 8.442322826 8.174570966 8.572360538 8.519909788 8.368858693 8.276612494 8.173866607 126354745 CopA Metal Resistance Copper Caldivirga maquilingensis IC-167 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Caldivirga;species:Caldivirga maquilingensis; 8.228950867 8.290447773 8.630623856 7.825502272 7.586931758 7.770345918 7.683458292 7.363460302 7.918775708 7.532654878 7.121090083 7.865107681 119897682 pstC Stress Phosphate limitation Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8.420247064 8.125757496 8.053963345 7.83318007 8.010483225 7.910891757 7.565988471 8.196629728 7.680976504 7.749334847 7.588476757 154162939 CopA Metal Resistance Copper Xanthobacter autotrophicus Py2 8.304809375 8.273349959 8.286208144 7.304989791 7.674743183 7.538711111 7.133653782 7.582741027 7.796553966 8.030325661 56798123 narG Nitrogen Denitrification Pseudomonas sp. MT-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.871566216 8.635062504 8.850141429 8.164399084 8.326010597 8.170112006 8.155319547 8.047592571 8.418998988 8.315396578 8.305836971 8.264795863 85693649 pilin virulence pilin Idiomarina baltica OS145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina baltica; 9.087394804 9.044587794 9.318764292 8.588778683 8.499087134 8.789723905 8.981618153 8.446899201 8.917762546 9.141679259 9.059623102 148474718 nrfA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.403103201 7.2553368 6.998526001 262078278 fnr Stress Oxygen stress Haliangium ochraceum DSM 14365 8.482140044 8.430080824 8.18164322 8.443844724 8.354308699 8.63370407 8.659852697 8.962421096 8.701935894 8.845332799 8.819939696 8.659950123 126347329 ureC Nitrogen Ammonification Streptomyces ambofaciens ATCC 23877 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ambofaciens; 8.432116123 8.692368487 8.317502663 8.405918503 7.791783776 8.458411303 8.877603204 8.434044362 8.78058657 8.605031513 8.670367102 116049934 exaA Organic Remediation Chlorinated solvents Pseudomonas aeruginosa UCBPP-PA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.866044626 8.859682758 9.161659811 8.613065913 8.499245107 8.651052919 8.507307383 8.747637528 8.505472465 8.841150021 8.906714734 8.897320609 257477372 ABC_antibiotic_transporter Antibiotic resistance transporter Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 8.860072207 8.900681554 8.88436042 8.630148472 8.748977126 8.596727204 8.735645647 8.777486156 8.951829899 9.165628745 8.804036241 238787693 B_lactamase_C Antibiotic resistance Beta-lactamases Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 7.438336522 7.680885337 7.439861335 7.427585384 7.237181433 7.778993296 7.440613109 7.301742987 7.350079136 184200196 katA Stress Oxygen stress Kocuria rhizophila DC2201 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 9.07234937 8.800331761 8.651187032 8.521264346 8.657002936 8.699149836 8.571214718 8.672675117 8.56014755 8.726680067 8.744470165 8.708822326 63139163 glnA Stress Nitrogen limitation Ruminococcus albus 8 8.304760553 8.350717054 8.508579723 8.005709325 8.144064155 8.002132952 7.73302706 8.062932965 8.222805739 8.144582648 8.27166663 8.092510655 124488197 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 8.274496884 8.433289661 8.503173275 8.124184478 7.930674796 7.864039799 7.707679705 7.608127499 7.99406431 7.847766888 7.576021275 8.008841775 156519339 BMO Organic Remediation Other Hydrocarbons Pseudomonas butanovora superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 9.103390954 9.240603044 9.24522787 8.693931893 8.586720683 8.306342429 8.406656036 8.648591068 8.208757752 8.559279255 8.529786831 8.823490722 218297363 sigma_70 Stress Sigma factors Thermus aquaticus Y51MC23 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus aquaticus; 9.165391742 9.270546754 9.086812132 8.571036887 8.436303701 8.415457951 8.356261255 8.200738854 8.567520589 8.524386841 8.400815994 8.619949776 115524265 pcc Carbon cycling Carbon fixation Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.906306533 9.930051822 9.975014437 9.630226148 9.798226281 9.500953087 9.479565646 9.845410556 9.429972128 9.727070288 9.845298627 9.820683311 87285396 amyA Carbon cycling Carbon degradation Starch Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 8.255281936 8.415093132 8.591987799 7.596203593 7.550499826 7.766048356 7.8956142 7.466738368 8.198333188 7.798452527 7.568665412 8.241224203 251799676 clpC Stress Protein stress Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 8.434048533 8.423884241 8.073529573 8.249752681 8.029673923 8.469503475 8.189883268 8.089786101 8.195219407 8.484350813 8.200751702 114569049 ahpC Stress Oxygen stress Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 8.526688036 8.220406399 8.364909072 7.993881413 8.198469734 8.249623604 7.975258014 8.038677766 8.285467343 8.291527477 8.270950961 7.96637384 23465007 silP Metal Resistance Silver Bifidobacterium longum NCC2705 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 8.166641031 8.291591419 8.174149795 7.877590802 8.027676352 8.233052624 8.503194748 8.155815419 8.570331998 8.217559936 8.080529571 8.030466923 156868874 ara Carbon cycling Carbon degradation Hemicellulose Clostridium leptum DSM 753 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 8.704440434 9.001423415 8.775093364 8.194809403 8.53077729 8.583028296 8.983564181 8.001064305 8.844207571 8.108088152 7.991384211 8.229847264 66845982 phytase Phosphorus Phosphorus utilization Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 8.420277499 8.308798996 8.029907244 7.904029538 7.783904471 7.529859536 8.006063022 7.819394526 8.316521404 8.009571321 7.942389094 197117619 CopA Metal Resistance Copper Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 9.090390279 9.033952979 9.246406227 8.632052477 8.392672576 8.504425221 8.550138547 8.571831378 8.496182536 8.560204135 8.45956701 8.798790329 197296842 B_lactamase_A Antibiotic resistance Beta-lactamases uncultured bacterium BLR5 superkingdom:Bacteria; 7.643050523 7.722141435 7.774921023 7.393264301 7.651473608 7.608403176 7.666384009 7.621118089 7.618382173 149143986 mer Metal Resistance Mercury Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 10.03281561 9.946060871 9.694922168 9.134644192 9.67483493 10.13187239 9.416080356 9.804930565 9.344842621 9.515467972 9.335158575 219563148 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 8.067108321 8.497437017 8.194430823 8.350273124 8.561984329 8.618914137 8.2688137 8.244917436 8.137306585 8.485853619 7.849095788 270508646 sigma_70 Stress Sigma factors Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 9.234295322 9.106193147 9.058823289 8.819476585 9.115292029 8.829211038 9.161660612 9.161394542 9.175334167 8.998823968 9.153622664 8.909325162 111025759 CDH Carbon cycling Carbon degradation Cellulose Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.962127092 8.405053213 9.074839829 8.758587766 8.661482273 8.335259504 8.487516677 8.318759039 8.594696781 8.544226991 8.694185766 88806955 pcc Carbon cycling Carbon fixation Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 8.516832194 8.416454106 8.337163982 8.209494694 8.473036482 8.624449946 7.983836912 8.374840502 8.37546275 8.59837704 8.835658926 8.528520912 151560144 CopA Metal Resistance Copper Ochrobactrum anthropi ATCC 49188 8.703602046 8.598882038 8.641362762 8.080999229 7.858489339 7.831146757 7.820594713 7.860576957 8.204666543 7.775183355 7.874443612 8.034371997 78102085 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.999976869 8.277733277 7.579064238 7.447139466 7.548445298 7.3840019 7.148723859 7.761712148 7.151715697 7.180106044 7.441709353 218721918 Catechol Organic Remediation Aromatics Other aromatics Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 8.296042208 8.383948128 8.60285212 7.540916199 8.053503534 7.983088478 7.160322738 7.276261535 7.198643303 7.724643873 10184710 vdh Carbon cycling Carbon degradation Others Pseudomonas sp. HR199 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 9.978227094 9.667374954 9.678022164 9.493278057 9.427387976 9.28530283 9.441602518 9.259845733 9.700827785 9.46255218 9.768282363 9.657151602 209503656 iro virulence Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.352036414 7.891350979 7.907662454 8.00860536 8.020950425 7.779861779 8.033731233 8.136446002 7.983648185 8.19624773 7.918450711 10441635 bphF1 Organic Remediation Aromatics Polycyclic aromatics Comamonas sp. JS765 8.759661951 8.418354126 8.616961324 8.242551216 8.497632684 8.458457235 8.282210039 8.339766355 8.5105592 8.360444623 8.484316318 8.193534564 46308002 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.788054929 8.518508002 8.893059653 8.329895487 8.45441515 7.996064158 8.121087627 8.371082736 8.405437213 8.354609211 8.07299392 8.451621119 56809431 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.200413205 8.05220177 8.02049353 7.629573395 7.516503735 7.578018068 7.447404213 7.4925934 7.710556729 7.399466544 7.374481543 7.402058204 218715232 Catechol Organic Remediation Aromatics Other aromatics Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 8.15149369 7.891358091 8.114376552 7.825330467 7.775873335 7.522605381 7.608324065 7.435018072 7.91118827 7.641547351 7.546455493 7.431020326 113866173 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 9.84225897 9.77203607 9.793119122 9.596086763 9.608355601 9.393489891 9.550845939 9.442322007 9.68375423 9.879480891 9.782152177 9.486491532 16081890 ferredoxin_oxidoreductase Bioleaching Electron transport Thermoplasma acidophilum;Thermoplasma acidophilum DSM 1728 8.532723158 8.454353391 8.703789608 8.419391073 8.358148401 8.444175565 8.042320961 8.702191929 8.264542487 8.597471444 8.559255627 8.511165006 229749626 glnA Stress Nitrogen limitation Stackebrandtia nassauensis DSM 44728 9.625434156 9.724772955 9.548872085 9.129005202 9.038084936 8.99908318 9.287995808 9.166177837 9.168842069 9.132531639 9.178179734 9.258280632 224027919 APS_AprA Sulphur adenylylsulfate reductase uncultured gamma proteobacterium 7.365091505 7.038177708 7.29610944 6.89299444 7.488037866 150388312 catB Organic Remediation Aromatics BTEX and related aromatics Alkaliphilus metalliredigens QYMF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus metalliredigens; 7.512962168 7.419825251 7.347537481 7.057059533 7.567130161 62426307 TerC Metal Resistance Tellurium Brevibacterium linens BL2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium linens; 8.85405826 8.591532566 8.353376958 8.590144327 8.998354777 8.652550687 7.955641155 8.528753495 8.052908928 119718705 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.591423344 8.516866946 8.489773796 8.412870487 8.537130059 8.669544612 8.564604724 8.72367782 8.582960599 8.668583471 8.505652222 23466251 xylA Carbon cycling Carbon degradation Hemicellulose Bifidobacterium longum NCC2705 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 8.594190519 8.794583308 8.524290096 8.663439451 8.61789907 8.505234807 8.722701555 8.635607234 8.477272347 8.656728736 8.903070807 8.545607062 76802027 rubisco Carbon cycling Carbon fixation Natronomonas pharaonis DSM 2160 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natronomonas;species:Natronomonas pharaonis; 8.472873362 8.352319832 8.719592803 8.376354736 8.265416134 8.164283138 8.316509496 8.096254311 8.48071239 8.520573024 8.390192499 8.169586107 87120960 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Marinomonas sp. MED121 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 8.075926194 8.148389081 8.177511556 7.442593699 7.626921435 7.875929997 7.979238523 8.032978016 7.826664198 32307915 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.396198072 8.161305468 8.272626282 7.609719737 8.384355445 8.277164778 7.948461612 8.192706447 7.819512356 8.129066692 7.524894201 123228448 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 8.000427053 8.069201587 7.29244388 7.48495833 7.788317463 7.56510953 7.480719798 7.401487742 7.46742606 7.510270912 119951663 bphA Organic Remediation Aromatics Polycyclic aromatics Arthrobacter aurescens TC1 8.373732356 8.347567764 8.621880561 7.74610816 7.697652326 7.826510754 7.463612714 7.167350786 7.877819429 7.559752125 7.708083407 7.929655719 214030001 nhh Organic Remediation Aromatics Nitoaromatics Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 9.201916963 8.813329616 8.638180947 8.627771048 8.879492395 8.428555673 8.650212977 8.990199814 8.873555207 8.824955396 194476895 amoA Nitrogen Nitrification superkingdom:Eukaryota;order:Euglyphida;family:Paulinellidae;genus:Paulinella; 8.474407285 8.383137237 7.373905247 7.903459865 8.005170813 7.943800674 7.870428707 262085509 ahpC Stress Oxygen stress Gordonia bronchialis DSM 43247 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 8.622366209 8.624345733 8.847690346 8.409829973 8.251905623 8.441037512 8.392215746 8.483197109 8.271840041 8.274895707 8.389624692 220717646 PobA Organic Remediation Aromatics Aromatic carboxylic acid Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 8.384555086 8.303910305 8.305038392 8.408765996 8.12860133 8.049964614 8.048530564 8.272699198 8.314291605 8.225106808 8.037334743 8.264925667 224802932 pstB Stress Phosphate limitation Opitutaceae bacterium TAV2 10.08125046 9.992010362 9.716675527 9.988633626 10.11725426 9.980504567 9.688623461 10.08369695 10.42193496 9.821452243 9.578413555 9.767393639 115259085 phoA Stress Phosphate limitation Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.409361748 8.17869709 8.245112947 7.860514141 8.02621079 8.034785204 7.876088739 7.489425372 8.115516703 7.568997704 7.252522746 7.415202294 90195874 nmoA Organic Remediation Aromatics Nitoaromatics Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.866434485 8.51370558 8.607483132 9.419475147 9.435602989 9.725837897 8.888423786 9.662245046 9.287760229 9.564710631 9.574626952 269099590 AceB Carbon cycling Carbon degradation others Thermanaerovibrio acidaminovorans DSM 6589 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Thermanaerovibrio;species:Thermanaerovibrio acidaminovorans; 9.678329578 9.553466322 9.590541638 8.369050758 8.487833 8.634259321 8.096026072 8.450275642 8.297332045 8.402344149 170079204 CopA Metal Resistance Copper Synechococcus sp. PCC 7002 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 9.09115998 8.758399337 9.079758781 8.07729389 8.137920368 8.085662936 7.813441407 8.282286153 7.862577524 7.81044856 8.188179803 193085185 narI Stress Oxygen limitation Chlorobaculum parvum NCIB 8327 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum parvum; 7.519758394 7.419845086 7.266459977 198261800 pstB Stress Phosphate limitation gamma proteobacterium HTCC5015 8.238803443 8.038750291 8.319261344 7.732371768 7.626296962 7.51661051 7.458575606 7.583251984 7.889472537 7.446827884 7.442400152 7.276377688 22759922 pheA Organic Remediation Aromatics Other aromatics uncultured soil bacterium superkingdom:Bacteria; 9.283179195 9.213271319 9.367951566 9.148281783 9.305282004 8.989269883 8.622886983 8.93520928 8.580535596 8.89133139 8.821324646 8.998157424 14024880 ureC Nitrogen Ammonification Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 8.740493232 8.050920372 8.837815193 8.60022284 8.262112 8.809307355 8.595506587 8.464712524 8.363671243 8.418284634 8.387129471 14024312 glucoamylase Carbon cycling Carbon degradation Starch Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 8.332939717 8.832012114 8.308068832 8.589415217 9.061141205 9.294005706 8.999897844 8.970183438 9.203039597 9.122331479 9.361935115 147676775 arsM Metal Resistance Arsenic Pelotomaculum thermopropionicum SI superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Pelotomaculum;species:Pelotomaculum thermopropionicum; 8.967783317 8.791891748 9.049386284 8.531270589 8.479378511 8.646441418 9.028084617 8.504271877 8.603524064 8.640620421 8.779099883 8.911097178 134099843 clpC Stress Protein stress Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 9.910456982 9.831011129 9.939773707 9.557600081 9.494973196 9.185822067 9.344575555 9.694015471 9.599196599 9.651852329 9.603508475 9.696151049 15602407 amyA Carbon cycling Carbon degradation Starch Pasteurella multocida subsp. multocida str. Pm70 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Pasteurella;species:Pasteurella multocida; 9.450544189 9.430033205 9.505491736 8.561399019 8.924637643 8.984304037 9.180510598 8.426740969 9.229461859 8.791045859 9.071239247 9.234892356 116699381 phoB Stress Phosphate limitation Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 8.401096058 8.195194887 8.611349757 8.590327974 8.648128215 8.373620799 8.329811544 8.637151268 8.556572891 8.801386108 8.630785605 8.601396901 194340831 oxyR Stress Oxygen stress Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.793334398 8.709783438 9.013834109 8.29155578 8.243959968 8.083083379 7.970793412 7.965631593 8.10817278 8.196839091 8.089586763 8.465884435 227978320 pstC Stress Phosphate limitation Tsukamurella paurometabola DSM 20162 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 8.923017557 9.053396817 8.952024692 9.173640449 9.067746665 8.956491871 9.44316209 9.319673475 8.92776066 9.406456122 9.277132868 9.047391748 78700534 dsrB Sulphur sulfite reductase Alkalilimnicola ehrlichei MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 8.719103065 8.893166447 9.094353531 9.086048672 9.262334374 9.04023969 9.228059938 9.575710886 9.200022362 9.544132106 8.984580642 9.324916899 114228253 ArsC Metal Resistance Arsenic Alkalilimnicola ehrlichei MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 8.695965202 8.34972298 8.734360405 8.238196175 8.397460961 8.36819114 7.687195849 7.848060868 8.160269436 8.095747158 8.185723439 8.092402922 121609744 pheA Organic Remediation Aromatics Other aromatics Verminephrobacter eiseniae EF01-2 9.38058689 9.158535354 9.172581985 8.838713378 8.463628417 8.634976888 8.979515909 8.683991049 8.9802785 9.025331357 8.586043847 157285567 narG Nitrogen Denitrification uncultured bacterium 9.853009379 9.637729559 9.829577709 9.401487049 9.373468527 9.180694559 9.559308417 9.363372085 9.750239972 9.541407612 9.696907255 9.516101163 94984583 sigma_70 Stress Sigma factors Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 9.147039091 8.871301009 9.292569862 9.418915737 9.276235342 8.733698947 9.037690092 9.800921382 9.12329238 9.318245217 9.116093639 9.477268063 121595443 sigma_70 Stress Sigma factors Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 8.029738186 8.226573943 8.152539016 7.543529926 7.349415469 7.354537401 7.846924864 7.605392341 8.161813721 7.512652557 7.362652307 7.543717318 153831666 katE Stress Oxygen stress Vibrio harveyi HY01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 8.311688637 8.29618737 8.357612802 8.162119848 8.310754756 8.342313136 8.240192729 8.158254753 8.000009757 8.210051948 159043279 oxyR Stress Oxygen stress Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 8.471890748 8.248053505 8.442729672 8.32742808 8.397624809 8.125849566 8.211424581 8.779971942 8.164462242 8.460489397 8.286823766 8.503922762 167035595 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.684168953 8.736330261 8.293102352 8.114310387 8.149537573 8.00341019 8.159262673 8.045666445 8.153984285 7.90990918 8.370481674 186459110 mer Metal Resistance Mercury bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 8.542747656 8.367941377 8.713435696 8.4059857 8.206523466 8.169358161 8.506993593 8.715274094 8.381121275 8.449424137 8.046663029 119880547 linB Organic Remediation Pesticides related compound Salinispora arenicola CNS205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 8.979925627 8.832377004 8.550012204 8.394105865 8.411189453 8.467035499 7.758091234 8.132003269 8.114119443 8.278992641 8.261390566 8.46276103 29605069 TerD Metal Resistance Tellurium Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 8.416852943 8.102165951 8.057722002 8.515707177 8.370722387 7.991480076 8.284326992 8.702624847 8.171564049 8.04891049 7.990481576 242309459 phoB Stress Phosphate limitation Helicobacter pullorum MIT 98-5489 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter pullorum; 8.294247955 8.352930537 116227955 sigma_24 Stress Sigma factors Candidatus Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 8.762665388 8.829515983 9.074823307 8.797272978 8.551471643 8.368933259 8.529913923 8.778557944 8.604072091 8.590689472 8.910247443 149921338 vanA Carbon cycling Carbon degradation Others Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 9.323074149 9.430862739 9.333627033 8.921544437 8.752786631 8.72292947 8.92796201 8.850406836 8.738944388 8.867307076 8.781663709 8.848401362 15890595 norB Nitrogen Denitrification Agrobacterium tumefaciens str. C58 8.189329567 8.049670803 7.360284727 7.969101092 7.740828586 8.195564069 7.689052141 8.293423747 7.357909551 7.508224944 7.527175957 212534992 Catechol Organic Remediation Aromatics Other aromatics Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 8.281271509 8.621874157 8.100788068 8.909085133 8.45244758 8.302568539 8.685166959 258627010 pilin virulence pilin Vibrio mimicus VM603 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 8.820843735 8.803716336 8.749214027 7.916556855 7.635797131 8.25979841 8.167564135 7.845263906 7.811407995 7.68690232 7.98887689 255341753 iuc virulence aerobactin Flavobacteriaceae bacterium 3519-10 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae; 8.788506502 8.613703097 9.020154783 8.59042157 8.272275214 8.274049017 8.093961096 8.392876027 8.373447342 8.436322331 8.232028572 8.554433127 198282354 CadA Metal Resistance Cadmium Acidithiobacillus ferrooxidans ATCC 53993 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 8.990487097 8.741384857 8.928142315 8.632388446 8.471273831 8.45626437 8.26094116 8.563934572 8.649301225 8.708292679 8.465688837 255013507 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Bacteroides sp. 2_1_7 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 9.014700436 9.202198859 9.194783119 9.455633732 9.267014462 9.82263091 9.451134877 9.401615925 9.497431777 9.662514304 9.427306422 240867726 fnr Stress Oxygen stress Ralstonia pickettii 12D 10.48603987 10.25728141 10.33297404 10.09858919 10.01697968 10.02139245 10.45850396 10.1180641 10.49605196 10.16862682 10.19281069 10.2317253 26278746 narG Nitrogen Denitrification uncultured bacterium 8.703818276 8.541487926 8.80963036 8.301394132 8.031454888 8.07891153 8.057637457 8.27349734 8.203781729 8.396570403 8.452783312 8.408128982 118424325 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.248962636 7.992003165 7.793440366 7.70809373 8.071598676 8.199961565 7.80998628 8.085247275 7.730718874 7.456154238 7.252802351 238725908 iuc virulence aerobactin Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 8.466514642 8.109272566 8.431486705 8.153327074 8.10247807 7.994077768 7.914437386 8.115775796 8.100814986 8.012478176 8.147929741 8.090889011 159177620 phoB Stress Phosphate limitation alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 8.84815539 8.803904034 8.774672596 8.711860621 8.45175578 8.415549863 8.165671525 8.360092225 8.219650172 8.37342254 8.34291804 8.420921578 28556705 catechol_B Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 9.488652734 9.775862383 9.772244808 9.552122925 9.505931576 9.357474034 9.518237118 9.708696604 9.722462116 9.565895377 9.526570345 9.643272748 118028658 nagG Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.753281952 8.687267701 8.725497897 8.352340235 8.318474473 8.217679907 8.01349447 8.745877756 8.624638433 8.621480549 8.467884245 8.634728557 151588768 Arylest Organic Remediation Aromatics Other aromatics Methylobacterium extorquens PA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 8.229214174 8.126926052 8.094281694 8.203394182 7.920571844 7.841684649 8.27302514 8.181541643 8.133938291 7.799276749 7.83733008 83839299 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 8.720405512 8.532119615 8.747937672 7.533302705 7.737662996 8.055553082 7.934178714 7.608255629 8.408283473 8.123795157 8.079061465 7.967817794 88789957 TerD Metal Resistance Tellurium Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 9.200980958 9.113953648 9.300263762 8.560353112 8.6097697 8.771533721 8.646787017 8.76674806 8.673436721 8.648036151 8.937354243 8.819207241 149924215 sigma_24 Stress Sigma factors Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 10.07363029 9.883468096 9.740597841 10.40435533 10.00682226 9.675217902 10.29605816 10.13267304 10.1649866 9.918299104 9.764593853 9.90925774 158332950 MFS_antibiotic Antibiotic resistance transporter Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 9.274675453 9.272621741 9.427430425 8.544128559 8.670998687 8.68845735 8.689160732 8.68238504 8.709704646 8.663555137 8.728288139 8.945888311 72388569 gyrB other category gyrB Psychrobacter jeotgali superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 8.729309439 9.235980779 9.037753875 8.225049364 8.753678864 9.047039429 9.215622302 8.587670949 8.881981203 8.603623052 8.749545475 8.966808588 219950290 gyrB other category gyrB Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 9.474178855 9.344546434 9.162089851 8.909174281 8.903428181 8.950128385 8.910755615 8.884957082 8.815383778 8.844555004 8.943443444 9.084025355 17430694 vdh Carbon cycling Carbon degradation Others Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 8.353739312 8.421515287 8.093122552 8.084210188 8.030293276 8.001384954 8.053416078 8.021832961 8.328813823 8.189012157 8.064453125 8.016096693 73537968 tftH Organic Remediation Aromatics Chlorinated aromatics Ralstonia eutropha JMP134 9.163200838 9.104279255 9.146246443 8.957724923 9.701180384 9.120418833 8.970519689 9.304776983 8.909342368 9.202644657 9.086564944 9.253416139 117999847 nagK Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.496227779 8.33095488 8.619846568 8.451967584 8.393587546 8.500487642 8.359164724 8.144578704 8.134672651 8.196720001 7.870073138 120611145 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 8.506463345 8.840160681 8.941453655 8.517794734 8.651819258 8.707259088 8.415842582 8.499061931 8.53890203 8.39663089 8.724620125 8.512115491 219863037 CopA Metal Resistance Copper Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 9.351844784 9.01091206 9.084957611 8.882436396 8.827328151 8.727124203 8.553495296 8.810304596 8.58209077 8.785317908 8.831426008 8.829342172 221721858 phn Organic Remediation Herbicides related compound Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.682751503 9.076270496 8.789012662 8.706075666 9.313426358 9.357305735 9.096269097 9.218142925 9.104791824 8.841274103 9.290123201 9.006923845 84509022 4HBH Organic Remediation Aromatics BTEX and related aromatics Loktanella vestfoldensis SKA53 9.112805434 8.145649119 8.466421367 7.944903733 7.666611091 8.149516314 8.148066145 8.269489128 8.134920661 7.878771885 7.734098086 149228844 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Pedobacter sp. BAL39 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter; 8.220679783 8.302014905 7.660515984 7.569859172 7.56584324 7.381435241 7.098763789 7.292448939 7.250731965 7.383884058 161504728 pilin virulence pilin "Salmonella enterica subsp. arizonae serovar 62:z4,z23:--" superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 9.128630395 8.96580018 9.219404281 8.608560619 8.536952139 8.534958716 8.46255359 8.775359457 8.275772631 8.535065636 8.271032086 8.857069983 194436458 TehB Metal Resistance Tellurium Escherichia coli 101-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 8.17488033 7.839229326 209551690 phn Organic Remediation Herbicides related compound Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.42213738 8.339739721 8.326390039 8.151764715 8.407108003 8.531026944 8.296236679 8.448464638 8.534517612 8.330274901 8.674497146 8.419173995 86139699 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.968576311 9.07828882 8.48958369 8.61978382 8.926007806 8.667191707 8.331033117 8.38837909 8.515103874 8.324978967 50541829 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 6.983330652 7.115704622 7.179330145 103487155 ZntA Metal Resistance Zinc Sphingopyxis alaskensis RB2256 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 9.954698614 10.13888149 10.18114262 9.160896788 9.359840781 9.462879422 9.738014748 9.325741885 9.689881404 9.373125884 9.3940075 9.642609713 150840372 bglP Stress Glucose limitation Actinobacillus succinogenes 130Z superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus succinogenes; 8.78237205 8.328191691 8.812894769 8.562100518 8.30160693 8.101781006 7.810281484 7.938409545 8.012340131 8.170615806 8.080671139 194333443 SMR_antibiotics Antibiotic resistance transporter Prosthecochloris aestuarii DSM 271 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Prosthecochloris;species:Prosthecochloris aestuarii; 9.24390407 9.301666269 9.613238187 8.65201362 8.579497347 8.477924722 8.319923132 8.259093985 8.310848182 8.503145065 8.556129231 8.807184421 145220326 sigma_24 Stress Sigma factors Prosthecochloris vibrioformis DSM 265 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeovibrioides; 8.703870657 8.530534117 8.686674786 8.629540584 8.4885761 7.984843234 8.163584991 8.509295438 8.214773458 8.411914194 8.4755925 8.184825051 115260004 akbF Organic Remediation Aromatics BTEX and related aromatics Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.236568962 8.137783542 7.579884787 7.592886129 7.354224406 7.046892754 7.586107636 7.960088026 7.708481792 7.464580146 7.420770594 108766036 atzA Organic Remediation Herbicides related compound Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 9.515303264 9.529397572 9.537229185 8.907488153 8.841949787 8.458572332 8.727064174 8.670866788 8.604071006 8.651974372 8.983134666 149139808 CadA Metal Resistance Cadmium Lentisphaera araneosa HTCC2155 superkingdom:Bacteria;phylum:Lentisphaerae;order:Lentisphaerales;family:Lentisphaeraceae;genus:Lentisphaera;species:Lentisphaera araneosa; 8.443918209 8.246283233 8.586135354 8.201715588 8.097995037 7.825676088 8.278534091 8.052164038 7.959818893 8.19396911 8.028174573 221534691 dehH109 Organic Remediation Chlorinated solvents Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 8.436978614 8.003896945 7.88500271 7.749659045 7.563068665 7.324391204 7.848295558 7.660965473 7.572399186 7.643566002 7.793157544 53850108 sox Sulphur Sulphur oxidation Pseudaminobacter salicylatoxidans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Pseudaminobacter; 8.075579971 8.752286489 7.547327384 7.551467708 7.617439874 7.888249516 7.653002653 8.37293405 7.52425179 7.548937345 7.612620853 117620009 MATE_antibiotic Antibiotic resistance transporter Aeromonas hydrophila subsp. hydrophila ATCC 7966 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas hydrophila; 8.690847999 8.521516344 8.41839178 8.531871261 8.483432132 8.327995933 8.164475897 8.562313173 254501465 sigma_32 Stress Sigma factors Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 8.87396752 8.83995033 8.858227502 8.28405106 8.606772463 8.731269351 8.39219241 8.78669821 8.497267588 8.674339318 8.392338412 261212865 amyA Carbon cycling Carbon degradation Starch Vibrio sp. RC341 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.455792502 8.510751839 8.658512111 7.923855911 7.98648438 8.268349158 8.586147194 8.474759442 8.371701883 8.87684516 8.531421141 209531994 gyrB other category gyrB Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 9.004940867 8.57367927 8.710060634 9.085459948 8.856085124 8.872128087 8.665374842 9.2216942 8.607720084 8.956094655 8.966614412 9.343462978 39996875 pilin virulence pilin Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 8.74709626 8.149508129 8.62079528 8.062459981 7.884407186 7.820100269 7.491358509 7.444345912 7.973378539 7.843499315 7.643736576 7.861319353 78212677 fnr Stress Oxygen stress Synechococcus sp. CC9605 8.875728869 8.841719961 8.696459001 8.131694755 8.58805429 8.577404642 8.818971892 8.642377241 8.39411965 8.421382583 8.751278112 156446925 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.042813643 8.930448826 8.81341634 8.356850096 8.241296595 8.298894179 8.204416379 8.319048266 8.276389179 8.445897647 8.414790088 8.64707303 78356070 dnaK Stress Heat shock Desulfovibrio desulfuricans subsp. desulfuricans str. G20 8.023729653 8.008649567 8.279408904 8.143692778 8.215474459 8.099298727 7.991156153 8.375701528 8.25148878 8.432891918 8.335161021 8.112658777 114800390 pimF Organic Remediation Aromatics Aromatic carboxylic acid Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 8.666301371 8.671764114 8.651255568 8.582698938 8.520774758 8.353309808 8.23369401 8.55961164 8.524803065 8.534340939 8.56482595 8.559639548 118016694 phn Organic Remediation Herbicides related compound Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 10.15893348 9.279735444 9.167501819 10.33058558 9.978008654 9.592711672 10.12758238 9.988110048 9.835816324 9.959478258 9.884235791 111147988 CopA Metal Resistance Copper Frankia alni ACN14a 8.524291948 8.679749847 8.235865758 8.533473029 8.445792806 8.255039056 8.279109639 8.6336645 8.400207017 8.44896881 8.337257117 8.011242114 219939251 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.472997159 8.628065849 8.738573968 8.161410216 8.306673797 8.069108216 7.847394322 7.912025822 7.984882218 7.91229031 8.242837614 8.228754633 30525504 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.944053467 7.701642525 7.621130884 7.431192782 7.593198099 7.743426426 7.876900796 7.54805796 86157240 cytochrome Energy process Energy process Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 8.91403227 8.671908817 8.829312471 7.966081772 8.170346596 8.134585793 8.133644626 7.873293209 8.143797976 8.191724723 8.286624819 8.327451839 14289341 benD Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. 19070 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.218297874 8.424988827 8.118388364 8.059603932 7.966814343 8.259001157 8.441563511 8.408945695 8.231424548 8.184644101 8.308903109 91696928 Catechol Organic Remediation Aromatics Other aromatics Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 7.526886019 7.663110424 7.66613104 7.546779855 7.825788907 7.959297307 7.746193436 7.833571849 88947219 ppx Phosphorus Phosphorus utilization Desulfotomaculum reducens MI-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum reducens; 8.681486164 8.65769687 8.915792761 8.180242943 8.216834033 8.099255091 7.711681041 7.864610606 8.251842146 8.032275809 8.03783802 8.237877693 260645162 narI Stress Oxygen limitation Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 8.862272034 8.628918168 8.850744392 9.038560593 8.9699269 8.836480447 9.226777097 9.063401712 8.913289056 9.005751103 8.803098718 8.868676052 270738287 sigma_24 Stress Sigma factors Desulfovibrio aespoeensis Aspo-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio aespoeensis; 8.252435974 8.187341884 7.256528635 7.550404041 7.360857154 7.729813159 7.052017747 7.725223076 7.476688041 7.178299495 7.521493207 74038446 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.781832869 8.793410182 8.794160184 7.447991797 7.734457445 7.801764971 8.117778197 7.503833494 8.344546184 7.502318587 7.563209556 7.976359476 121718967 CopA Metal Resistance Copper Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 9.175118219 9.51942545 9.151785392 8.875498242 9.181690605 9.58782709 9.767234998 9.766875663 9.71912586 9.85097407 9.588993015 9.924273526 209486117 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.499632533 8.439939506 8.60864568 8.233642384 8.03032478 8.127867727 8.16338432 8.08632084 8.313850863 8.250004755 8.162444212 8.099708771 71916717 CODH Carbon cycling Carbon fixation Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 8.621406262 8.737104588 8.496778085 9.12196157 9.018853729 8.789882383 8.687740835 9.197367605 8.665997111 8.929094673 9.046327591 9.036796445 154449709 exoglucanase Carbon cycling Carbon degradation Cellulose Fusicoccum sp. BCC4124 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Botryosphaeriales;family:Botryosphaeriaceae;genus:Fusicoccum; 8.76566903 8.505542867 8.020357989 9.059836701 8.902051189 8.971088962 8.394736002 9.14539857 8.38196252 8.751260495 8.964418512 9625474 DNA_polymerase_type_I Bacteria phage REPLICATION Mycobacterium phage L5 order:Caudovirales;family:Siphoviridae;genus:L5-like viruses; 8.556532053 8.628027378 8.417696606 8.491555199 8.990790903 8.553420507 8.72729828 8.365629929 8.744594579 145223953 AceB Carbon cycling Carbon degradation others Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.974037913 9.104606007 9.058655291 8.664002397 8.556225983 8.532884598 9.11088609 8.548045256 9.145980867 8.563280857 8.551052368 8.646638604 158334136 fnr Stress Oxygen stress Acaryochloris marina MBIC11017 8.757972275 8.720098012 7.734628537 8.350185836 8.450366271 8.968706782 7.741120077 8.907425628 8.195643486 7.99432773 8.297327562 90420452 xlnD Organic Remediation Aromatics Other aromatics Aurantimonas sp. SI85-9A1 8.190260626 8.288623738 7.841107249 7.700659834 7.930518312 8.04377622 8.162265576 8.105062189 8.320751386 8.411741909 18076027 metC Metal Resistance Mercury Pseudomonas sp. superkingdom:Bacteria;phylum:Proteobacteria; 8.270038564 8.578228191 8.443102865 8.12563715 8.177046637 8.044219799 8.203314413 8.257335784 8.581532521 8.143371315 7.988186536 8.103157028 89100582 TerD Metal Resistance Tellurium Bacillus sp. NRRL B-14911 8.665249956 8.628531408 8.313702579 8.229749758 8.162413705 8.157291373 8.06679614 7.968501946 7.689120448 8.16429981 146188539 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.210560244 8.339068356 7.360168525 7.395515322 7.659433279 7.798918826 6.925434355 8.21675025 7.326687008 7.290234501 7.67250453 78093554 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.340966937 8.3780872 8.602791536 7.984284252 7.639562259 7.899999471 8.197639693 7.593145264 8.738532577 7.590722811 7.648394774 7.905986753 46202750 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 8.990157493 9.090249148 8.91870678 8.880224281 8.834960562 8.674103511 9.066092296 8.891572804 8.895905663 9.008836838 9.096615999 8.642651186 148571563 narJ Stress Oxygen limitation Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 8.032703341 8.032633625 7.094848135 7.267658557 7.541524725 7.809631212 7.35324966 8.12324404 7.214770064 7.112105855 187926488 ChrA Metal Resistance Chromium Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.512930681 9.037159724 8.765022755 8.368684398 9.380303227 9.4808274 9.400565756 9.210503036 9.310742981 9.43914364 9.223412155 69937812 ArsC Metal Resistance Arsenic Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.424808129 8.56925066 8.264842274 7.72703769 7.758026823 8.557988992 8.764798018 8.596578807 8.790518663 8.202309487 8.584353919 8.488086158 6491822 mer Metal Resistance Mercury Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 10.0255236 9.798500924 9.808735294 10.00509606 9.874725453 9.813929628 9.687263985 9.883250509 9.775347238 9.660891501 9.664846996 9.968701099 88921344 dehH Organic Remediation Chlorinated solvents Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 8.700951225 8.632368453 8.562751514 8.020253908 8.162761882 7.874825542 8.237918981 7.989386865 7.949051505 7.914030008 7.918494906 93358395 hly virulence hemolysin Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.251643425 8.465635762 8.164054771 7.805957239 8.21285976 8.471089512 8.254513429 8.275984489 8.434706948 8.263140934 8.305460283 8.137757751 229918221 nplT Carbon cycling Carbon degradation Starch Exiguobacterium sp. AT1b 9.086081461 8.866911856 9.38594723 9.013305725 8.917876444 8.615279183 8.713958845 8.810689683 8.768825652 8.821706005 8.452377403 3650469 oxyR Stress Oxygen stress Mycobacterium marinum superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.457260652 8.622814917 8.705615596 7.760613976 8.067737634 8.151469119 8.502507653 7.610008055 8.414813314 7.84880419 7.775641084 7.995624603 149810237 phn Organic Remediation Herbicides related compound Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.893135785 8.771090817 8.587607272 8.98563877 8.984752388 8.891036165 8.537369736 9.197924061 8.635680893 8.93243056 9.013770081 8.972846756 227822356 fnr Stress Oxygen stress Rhizobium sp. NGR234 9.657754818 9.718451584 9.423048663 9.240177084 9.102908803 9.372067902 8.728479072 9.060780403 8.836134399 8.920338968 9.019591663 9.09779593 90419555 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 8.552375461 8.578687389 8.895587589 8.881721322 8.694700973 8.92490073 8.914920494 8.726828557 8.721194092 8.8726081 8.493787866 91787020 pimF Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 9.041891351 8.956944974 9.230856983 8.768211388 8.462391142 8.248730012 8.561166087 8.686660186 8.529413353 8.450190632 8.693149111 68468554 tfdA Organic Remediation Aromatics Chlorinated aromatics Candida albicans SC5314 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;genus:Candida;species:Candida albicans; 8.581936622 8.570667149 8.624351513 8.132309747 7.842056016 8.012460529 7.38308159 7.596161326 7.761321794 7.971274021 7.942647106 8.273598935 121605372 nagI Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8.334248919 8.536476794 8.481959899 8.50076309 7.766215935 8.67939913 7.858128758 7.934207832 7.717767766 46107714 ureC Nitrogen Ammonification Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 8.275422374 8.154618614 8.444159491 7.86062209 7.737848104 7.770801871 7.269609198 7.601525537 7.693265227 7.933995691 7.915468905 7.912703665 52306251 SMR_antibiotics Antibiotic resistance transporter Mannheimia succiniciproducens MBEL55E superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Basfia;species:Mannheimia succiniciproducens; 9.034333835 9.092277482 9.160906022 8.85348275 8.599138123 8.641602174 8.758126253 8.792157044 8.662464749 8.77463982 8.618924565 8.813175768 70993166 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 8.705709808 8.890769741 8.94031783 8.2579258 8.152403146 8.41142659 8.141485723 7.720026391 8.530595145 8.075443495 7.974117352 8.405360238 163741941 CopA Metal Resistance Copper Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 9.805094146 9.882431853 9.801327792 8.575097708 8.848642928 9.31898668 9.031054664 9.946456179 9.151096408 9.235559764 9.395602098 114327395 ChrA Metal Resistance Chromium Granulibacter bethesdensis CGDNIH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 8.950477205 8.79364593 8.820470526 8.391003956 8.283954039 8.359596408 8.14631024 8.354893975 8.305531062 8.370264526 8.159377684 8.446659413 118669136 CadA Metal Resistance Cadmium Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 9.062274237 8.524951538 8.892985988 8.379775315 7.847279276 8.097891585 8.226873283 8.180477941 8.156546442 8.412774248 8.102296376 8.482561121 188535448 SMR_antibiotics Antibiotic resistance transporter Erwinia tasmaniensis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia; 8.374989259 8.328093761 8.536056681 8.138994915 7.927937029 7.917555809 7.572239608 7.749861441 8.017630084 8.001541877 8.048025064 8.138981882 41407116 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 8.893558569 9.096942643 8.632941069 8.001827573 8.611569371 8.441805604 8.593664499 7.805663215 8.771084648 8.452605188 8.734891575 8.421636264 190575237 SMR_antibiotics Antibiotic resistance transporter Stenotrophomonas maltophilia K279a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 8.803857825 8.367760936 8.457801746 8.222133478 8.048617845 8.363054523 8.304886762 8.215476091 8.318392325 8.407791454 8.159951729 157370551 nagG Organic Remediation Aromatics Aromatic carboxylic acid Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 8.679561595 8.465422311 8.709557111 8.241989235 8.132159932 8.069498171 7.785756748 7.874579616 8.379001542 8.053939195 8.008975932 8.195201733 225701799 srt virulence surface protein Streptococcus equi subsp. zooepidemicus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus equi; 8.223998561 8.242000219 7.51582095 7.523402983 7.425243447 7.247410239 6.957862074 7.75399907 7.40959928 6.985038456 7.586710073 117164684 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Streptomyces ambofaciens ATCC 23877 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ambofaciens; 9.126795216 9.276056798 9.343535773 8.375717049 8.639001257 8.675141761 8.760399024 8.318770849 8.626509108 8.482905653 8.576044329 8.750393229 218763013 pcc Carbon cycling Carbon fixation Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 8.215333894 8.424544164 8.210283267 8.195920455 8.364900782 8.693379845 8.557439907 8.501352761 7.773209038 8.400308591 113935961 nitA Organic Remediation Aromatics Other aromatics Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 9.442958437 9.566445807 9.221813004 8.730104664 9.028723464 9.187288572 9.035187347 9.191221959 9.019702621 9.075535933 9.346902409 9.095220013 194477417 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 8.903340835 8.442527407 8.512897205 8.211796549 7.863907171 8.01220447 7.835059072 7.759914733 7.975210332 7.914730722 7.792198576 8.069401881 116104538 glnR Stress Nitrogen limitation Lactobacillus casei ATCC 334 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus casei; 8.478486368 8.57750327 8.375425369 8.517593769 8.777114304 8.876699467 8.643389079 9.162914249 8.582060697 9.070030469 9.022671698 9.016257424 149125660 TerC Metal Resistance Tellurium Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 8.492390613 8.350286013 8.504302051 7.881467772 7.81152597 7.872781038 8.012181904 7.869810327 7.770724121 8.012197042 168702181 Mex Antibiotic resistance transporter Gemmata obscuriglobus UQM 2246 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata;species:Gemmata obscuriglobus; 8.927380587 8.994094285 8.70929847 8.455887141 8.409033628 8.331704541 8.572492141 8.647488234 8.383184514 8.67383547 8.549375167 8.436407631 74422182 CadA Metal Resistance Cadmium Nitrobacter winogradskyi Nb-255 8.707938747 8.939139808 8.767650558 8.461199111 8.438117701 8.323823626 8.357646914 8.381325968 8.50766273 8.109875927 8.134313628 8.143601068 11527292 sigma_70 Stress Sigma factors Thermus aquaticus superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus; 8.389133457 8.399406272 8.28459592 7.950332803 8.07733991 8.419902354 8.274071365 8.14304469 8.616869016 7.778935888 8.203016041 7.877881357 24413912 cellobiase Carbon cycling Carbon degradation Cellulose Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.198916378 8.116682099 8.58434972 7.790844556 8.43562981 7.811301366 8.012908475 8.600008448 8.152977552 8.514262197 8.093224879 8.206154118 89096549 katE Stress Oxygen stress Bacillus sp. NRRL B-14911 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 8.921379812 9.014378393 8.780382586 8.330873415 8.600855539 8.407558583 9.1348625 8.639603357 99038710 pstB Stress Phosphate limitation Ruegeria sp. TM1040 9.172112182 9.105450146 8.152445006 8.697868206 8.157296484 8.457107306 8.440584386 77386373 ZitB Metal Resistance Zinc Rhodobacter sphaeroides 2.4.1 8.44019863 8.803203793 8.61408274 8.294148607 8.159184501 8.2232872 7.999253238 8.143025921 8.165655361 8.167507345 8.003562366 8.319283675 190697764 Tet Antibiotic resistance other Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.788747226 9.025047465 8.744631259 8.766888901 8.886262817 8.593826793 8.442943436 8.849701216 8.603808802 8.691821915 8.745161336 90197718 TerC Metal Resistance Tellurium Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 10.0427168 10.30428008 10.09159949 10.43616339 9.862102436 9.863548422 10.55622741 10.46493316 10.32113546 10.60337696 10.45645542 10.15389939 237751375 SMR_antibiotics Antibiotic resistance transporter Helicobacter bilis ATCC 43879 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter bilis; 8.697278347 8.404077704 8.532927021 7.741731321 7.76600808 7.851470526 7.321499512 7.469861253 8.026170691 7.360481171 7.651117942 7.886966536 256375327 obgE Stress Radiation stress Actinosynnema mirum DSM 43827 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinosynnemataceae;genus:Actinosynnema;species:Actinosynnema mirum; 8.833272686 9.017382137 8.722801612 8.611038263 8.280705144 8.535881663 8.966090775 8.771446639 8.661045197 8.433383058 8.424924981 8.067586384 144905457 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.843915991 8.636916435 8.711365837 8.357161919 8.325886082 7.987883646 8.187214011 8.3676869 8.204448308 8.392215196 8.189930405 8.306769259 118046834 cellobiase Carbon cycling Carbon degradation Cellulose Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 8.933241402 8.785670937 8.782991445 8.397274992 8.124570838 8.031849924 8.466004152 8.122123337 8.647997368 8.313943492 8.229862757 8.280304465 113880453 dnaK Stress Heat shock Synechococcus sp. CC9311 8.115431769 8.19007681 7.163549265 7.238541486 7.324900584 6.920359074 6.635720841 7.453776759 7.315433082 7.232508843 7.680980757 28919596 endoglucanase Carbon cycling Carbon degradation Cellulose Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 8.940061748 9.094973033 9.035761807 7.888740671 8.643738462 8.910072271 9.215323114 8.343435143 9.036059162 8.481938517 8.233341774 8.535138453 41397918 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 8.727423683 8.665504077 7.740108526 7.823585556 7.804800879 8.030393361 7.591346692 7.905737099 8.232303777 7.868759804 251775515 cytochrome Energy process Energy process Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 9.949750492 9.264519875 8.986721433 9.349813204 8.56039222 8.246810594 28918781 Catechol Organic Remediation Aromatics Other aromatics Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 8.235188148 8.64735173 7.938168563 8.335798102 8.575668367 8.657282693 8.516338962 8.312507936 8.746353459 8.757227753 8.904075347 108743469 ureC Nitrogen Ammonification Streptomyces kanamyceticus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 9.485073359 9.039041974 9.286013971 9.127544981 9.119709853 9.040254829 9.034373067 9.055922641 9.011793652 8.833734841 9.119214376 8.967639785 256790451 nrfA Nitrogen Dissimilatory N reduction Slackia heliotrinireducens DSM 20476 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Slackia;species:Slackia heliotrinireducens; 8.569173151 8.391096637 8.220572966 8.504225411 8.42126437 7.813208323 8.329953128 8.362403424 8.131849893 84317244 silC Metal Resistance Silver Pseudomonas aeruginosa C3719 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.815373943 8.370643976 8.615456924 8.466535185 8.329676627 8.512721186 8.37009997 8.46396119 8.217736765 8.302284421 8.079943414 262080177 obgE Stress Radiation stress Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Haliangiaceae;genus:Haliangium;species:Haliangium ochraceum; 8.586845909 8.366921126 8.420034068 7.531706199 8.277521094 8.256332495 8.632417466 7.808617261 8.225327678 7.654168477 7.783305316 7.496182484 214030770 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 9.32044671 9.337513323 9.179097218 8.71479794 8.81562062 8.834853283 9.023232363 8.769377896 9.117737919 8.959840166 9.088725378 9.077540172 218530027 atzA Organic Remediation Herbicides related compound Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 8.635814796 8.690653411 8.423573328 8.427045076 8.49392255 8.435562738 8.564759961 8.569198535 8.690801805 8.63956888 8.850050695 8.601789733 38194118 Xamo Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 7.208276796 7.326350416 7.168870454 6.617442443 7.403393579 148260843 Catechol Organic Remediation Aromatics Other aromatics Acidiphilium cryptum JF-5 9.042878987 9.17690949 9.221645791 9.249304351 9.256028126 9.209157238 9.334803656 9.559213171 9.553676782 9.834085905 9.817821567 9.570557679 220914023 nmoA Organic Remediation Aromatics Nitoaromatics Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 9.869756208 8.818961633 8.934608227 9.844533416 9.481687044 9.032548959 9.823381618 9.475707071 9.914803876 9.370209827 9.215717012 9.044744341 804653 xylA Carbon cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 8.337107932 8.198473928 7.636111565 7.451749779 7.461919138 6.855293528 7.88911391 7.135095192 7.597769863 209401770 narG Nitrogen Denitrification uncultured bacterium 9.222976904 9.209193958 9.21209991 8.8851639 8.971917048 8.716993228 9.129928513 9.105056899 9.056098267 8.91521947 8.943541518 8.892759503 196228291 obgE Stress Radiation stress Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 9.4184849 9.395974774 9.55225049 8.428140513 8.402416633 8.625823814 8.427147582 8.178639181 8.447040848 8.486723479 8.759365988 78038245 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Xanthomonas campestris pv. vesicatoria str. 85-10 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas euvesicatoria; 8.833410816 8.668987337 8.604418338 8.679642285 8.566209299 8.481974987 8.579756179 8.660395221 8.55683326 8.384949893 8.44840679 8.422752731 118051342 ChrA Metal Resistance Chromium Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 9.167338853 9.17190877 9.197059544 9.087510531 8.981531327 8.695228961 9.226487452 9.480170119 9.171067449 9.416768284 9.203779072 9.29886435 225194140 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.403947316 8.671665698 8.584527127 8.697467501 8.755813609 8.875954697 8.75454856 9.185307203 8.440324596 8.932287914 8.725556458 9.022885024 160900517 gyrB other category gyrB Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 9.200287346 9.104155303 8.905031101 8.366669101 8.575811994 8.900278438 9.531000853 8.928989169 9.460265241 8.846416904 9.207815143 8.761503048 227882417 glucoamylase Carbon cycling Carbon degradation Starch Halogeometricum borinquense DSM 11551 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halogeometricum;species:Halogeometricum borinquense; 9.31220718 9.04285777 9.083951819 9.162734338 9.043529988 8.672777941 8.98689641 8.946199667 8.962737226 9.043848123 8.973634117 227339361 MFS_antibiotic Antibiotic resistance transporter Rhizobium sp. NGR234 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 9.361496078 9.314223101 8.970963022 8.883660881 9.111165192 9.081061577 9.663188839 9.355892356 9.216628095 9.219249027 9.597497913 9.148683959 170605570 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.231462237 9.285674712 9.524355967 8.817601568 8.808913564 8.755691505 8.634020931 8.768353526 8.63193053 8.699413733 8.871116527 213524230 cellobiase Carbon cycling Carbon degradation Cellulose Bifidobacterium longum subsp. infantis ATCC 15697 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 9.742821388 9.901206442 9.934031329 9.590668777 9.846346137 9.584341913 9.80720492 9.950329213 9.570953143 10.11339475 9.918753219 9.951459717 118170097 nitA Organic Remediation Aromatics Other aromatics Mycobacterium smegmatis str. MC2 155 7.793327355 7.624336301 7.506659801 7.545098273 7.577134018 7.90211589 7.871816002 7.630602908 7.839457636 94309786 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.592478437 8.18045853 8.121643826 7.821502085 7.416130247 8.401165932 8.530289239 8.097013582 8.524608372 8.091306386 8.355631352 8.273200351 106768482 ZntA Metal Resistance Zinc Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 8.721551031 8.794946323 8.555071384 8.724268009 8.615174325 8.472780956 8.400208323 8.170033341 118616098 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 8.667052703 8.760340375 8.66418995 7.980062514 7.945346864 8.254830295 8.803461579 8.246175394 8.658594101 8.474120273 8.386035547 126708155 bclA Organic Remediation Aromatics Aromatic carboxylic acid Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 8.771533099 8.845809399 8.776233674 8.44009986 8.583466488 8.558612373 9.04308045 8.807967975 9.092117971 8.554178304 8.546827076 8.590359956 158138869 narG Nitrogen Denitrification uncultured bacterium 8.810575006 8.646509027 8.533706295 7.915453137 8.045967794 8.014287327 8.02734905 7.600576321 8.547618954 7.677371057 7.590154722 7.74665155 260630416 pstB Stress Phosphate limitation Jonquetella anthropi E3_33 E1 10.32339934 10.04586114 10.15700594 9.066131585 9.338163735 9.461710823 9.921912763 9.256824334 9.516821429 9.271272313 9.593835489 9.443689375 206686118 hrcA Stress Heat shock Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.971514683 9.116925339 8.970632828 8.732304702 8.864776708 8.548901908 9.166074783 9.021442821 8.742771129 8.523823643 8.716386859 8.464196201 169637068 gyrB other category gyrB Candidatus Desulforudis audaxviator MP104C superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Candidatus Desulforudis;species:Candidatus Desulforudis audaxviator; 8.68027955 8.612960476 8.576994826 7.955459356 8.181153184 8.098888843 7.947168958 8.165598971 8.625072582 7.858140261 8.147161651 8.01227831 1100221 nifH Nitrogen Nitrogen fixation Nostoc sp. superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc; 8.384347721 8.050026619 8.449152184 7.414265621 7.317521898 7.337178505 6.905793606 6.867830994 7.503440973 7.227474499 7.021133645 7.379258973 241463126 Tet Antibiotic resistance other Allochromatium vinosum DSM 180 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 9.204525199 9.059586837 9.254185863 8.915756094 8.94209752 8.664137637 8.816500564 9.180855754 9.14238637 9.100389772 9.064137331 9.042523181 88813119 CopA Metal Resistance Copper Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 9.0126676 8.932150252 8.81017211 8.871695642 8.96321431 9.061668851 9.208703867 8.885746536 9.15396749 8.794885444 9.119847344 9.001324323 167034307 pheA Organic Remediation Aromatics Other aromatics Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.384870588 8.124827619 8.460478812 8.495868669 8.331376813 8.254363286 8.177925148 9.007734729 8.425403843 8.687773443 8.505594885 8.59599468 227289844 cda Carbon cycling Carbon degradation Starch Deinococcus radiodurans R1 9.544124545 9.493044631 9.018248265 8.936717812 8.924668564 9.185321814 8.869353877 8.903118929 8.993717773 9.070486047 239839051 glnA Stress Nitrogen limitation Micrococcus luteus NCTC 2665 8.399418683 8.518939767 8.108565923 8.283534499 8.489238988 8.281627294 8.311616089 8.465743646 8.070077077 8.392862122 7.987577532 198249221 cap virulence capsule Acidithiobacillus ferrooxidans ATCC 53993 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 8.562926381 8.641458753 8.603941918 8.830614806 8.737854888 8.520199766 8.824669518 8.827305977 8.694230524 8.738722202 8.8054759 8.624907324 222055654 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.673357081 8.705835542 8.913117345 8.333209214 7.92907365 8.300086228 8.376606016 8.435534672 8.016254491 7.861293788 8.425159385 107029134 tfdA Organic Remediation Aromatics Chlorinated aromatics Burkholderia cenocepacia AU 1054 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 8.302522007 8.248079995 7.881203776 8.042438216 7.933114634 7.89066539 8.085657737 8.196234755 7.686479383 7.828592988 7.695056304 238787855 pstA Stress Phosphate limitation Yersinia frederiksenii ATCC 33641 9.285177585 9.350557506 9.410026864 8.787035142 8.831934781 8.525556041 8.505748399 8.526254157 8.552323416 8.386255828 8.657570163 304359 cellobiase Carbon cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas; 9.395476091 9.557778944 9.537318423 9.121981792 8.987085768 8.703107956 9.028984701 9.125429836 8.71941023 8.962155581 8.915338817 9.072551172 225194052 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.517937357 8.873134393 9.029109249 8.856493985 8.880065517 8.514246104 8.638179208 8.848331349 8.712005216 8.866603334 8.958719417 8.70521084 221633802 pstB Stress Phosphate limitation Thermomicrobium roseum DSM 5159 9.965164322 9.965666387 9.851005755 9.287471254 9.6075532 9.778017191 10.17200757 9.374197651 9.928209631 9.546379762 10.48124605 9.85943536 156719705 CopA Metal Resistance Copper Hydrogenobaculum sp. Y04AAS1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenobaculum; 8.255394746 8.374337453 8.615851992 8.328757298 8.160121522 7.961287911 8.048576752 8.124448951 8.044487111 8.082335815 7.90902656 8.279057434 113529632 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 9.385827514 9.3326749 9.534405298 8.858715358 9.01667661 8.876305235 8.995198446 9.283240122 9.234667197 9.380656449 9.124212975 9.218458397 78222782 pimF Organic Remediation Aromatics Aromatic carboxylic acid Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 7.931948049 7.909950382 7.827558547 8.185445528 7.906133105 7.572800171 76666604 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 8.796993806 8.913014328 9.171866411 8.017154767 7.590630351 8.15157598 8.145789299 7.891221887 8.214017505 8.036508253 8.029512258 8.151970628 196480372 linC Organic Remediation Pesticides related compound Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 9.702592925 9.2961161 9.299007578 9.302234958 9.291650097 9.047405692 9.182275895 9.417630468 9.360181497 9.337526473 9.375215583 9.300961794 87281083 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.696622113 9.811422474 9.919197562 9.387886924 9.341072483 9.156297777 9.016895705 9.208128664 9.284409796 9.344876986 9.354595979 9.445160707 167031737 obgE Stress Radiation stress Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.099086383 7.995792645 7.871200345 7.607788136 7.912172953 8.000876927 7.737315567 7.946263409 7.848689814 7.71822785 15806252 pilin virulence pilin Deinococcus radiodurans R1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 9.155523831 8.589963192 8.993773718 8.939436358 8.488173097 8.155701016 8.483753594 8.543671727 209501720 CopA Metal Resistance Copper Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.96079037 8.673591744 8.976997273 8.305893877 8.178007448 8.332595493 8.022323332 8.047380921 8.054363264 8.060543505 8.444862027 109290296 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.181220005 8.008492267 8.343818392 7.151618411 7.325752508 7.641876225 7.353021097 7.499212332 7.446676299 83718108 proV Stress Osmotic stress Burkholderia thailandensis E264 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 8.908527359 8.788054673 8.667957335 8.438126416 8.464357916 8.396369422 8.278742913 8.554204834 8.386137731 8.446574387 8.737162522 94471237 narG Nitrogen Denitrification uncultured bacterium 9.35933519 9.360730846 9.426244552 8.923587821 9.134358959 8.863486733 8.866516261 9.019281951 8.74389487 8.945964562 9.015106824 9.163181968 70734256 nahA Organic Remediation Aromatics Polycyclic aromatics Pseudomonas fluorescens Pf-5 8.894406299 8.942885675 8.994155247 8.503492189 8.645123954 8.825349121 8.912242921 8.526374879 8.619337449 8.642510002 8.534511159 8.611532581 241214266 pstA Stress Phosphate limitation Asticcacaulis excentricus CB 48 7.677271804 7.686644413 7.683543492 7.415557359 7.895209186 7.870120441 7.634904517 7.58153833 7.932568282 241773310 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 8.681184638 8.405121249 8.41822311 8.318919485 8.117832045 8.266074875 8.108897513 8.324575485 8.162211473 8.033006907 8.099568743 124268147 silC Metal Resistance Silver Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 8.797429416 8.604303164 8.813269115 8.581394469 8.068646305 7.930828632 8.43581954 8.105934268 8.73828781 7.981708363 8.031778299 7.99873192 211958105 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 8.513628223 8.614402255 8.554623748 8.601766616 7.998437939 8.2883152 8.757342414 8.52294342 8.588325197 8.077746205 8.094264826 7.914153749 281194808 sigma_70 Stress Sigma factors Cylindrospermopsis raciborskii CS-505 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Cylindrospermopsis;species:Cylindrospermopsis raciborskii; 8.61083592 8.32657427 8.719491726 7.973935759 7.856127741 7.708304809 7.70707485 7.489082568 8.096411665 7.964629581 7.593009187 157321177 BADH Organic Remediation Aromatics Other aromatics Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 8.833238174 8.862384738 9.046227193 8.214415572 8.245928696 8.204808703 8.167845923 8.009571587 8.461727084 8.114100389 7.976615475 8.2421645 214044615 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.567325354 8.998464772 7.746131118 7.586870303 7.747169813 7.922043132 7.387986122 7.501430634 7.467623128 7.662830206 2293079 xylG Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.383238005 8.581844874 8.449964248 7.904908769 8.089467421 8.379567105 8.561003598 8.272932003 8.322304497 8.536384899 8.458920901 8.556440749 84393644 ppx Phosphorus Phosphorus utilization Vibrio splendidus 12B01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 8.465035067 8.102718346 8.292207622 8.6389428 8.464557325 8.340743609 8.761253922 8.552604062 8.793722115 8.565526897 213967612 HBH Organic Remediation Aromatics BTEX and related aromatics Pseudomonas syringae pv. tomato T1 8.283264608 8.079648863 8.073028978 8.021813761 7.664528074 7.872701058 7.790050661 7.881323746 8.040466627 7.968594749 7.991988283 7.830386445 262185836 pstB Stress Phosphate limitation Aeromicrobium marinum DSM 15272 9.221566704 9.060160158 8.819602145 9.579608056 9.417839415 9.061535783 9.525798763 9.436693199 8.958442534 9.280708603 9.21871329 8.997569388 182415523 mannanase Carbon cycling Carbon degradation Hemicellulose Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 8.818930374 8.339917193 8.495522797 8.28473466 8.228184358 8.463146818 8.186670386 8.302903483 8.484789301 8.170829825 8.531845918 8.201237543 116627797 pstB Stress Phosphate limitation Streptococcus thermophilus LMD-9 8.128152919 8.112528581 7.604173587 7.659516735 7.1499077 7.394180858 7.16253266 7.182880469 7.723883859 238843260 endochitinase Carbon cycling Carbon degradation Chitin Microsporum canis CBS 113480 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma otae; 8.805877145 9.05765238 9.126383843 8.381944449 8.281997678 8.432454355 8.6488839 8.424397778 8.990410266 8.439363765 8.392274811 8.414193743 118706461 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.570354578 8.21919198 7.947827539 7.877695291 7.673025715 7.970144407 7.378165219 7.625823249 7.494997041 7.85531004 241909177 hly virulence hemolysin Desulfovibrio vulgaris RCH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 9.176221718 9.287740463 9.142695578 8.429278106 8.373909453 8.794099886 8.886454363 8.897403937 8.892523086 8.915987381 8.700553664 9.056923491 255108427 sigma_70 Stress Sigma factors Sideroxydans lithotrophicus ES-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Sideroxydans;species:Sideroxydans lithotrophicus; 8.676179665 8.923974021 9.020513915 8.40252867 8.236712549 8.342962299 8.317440646 8.09615598 8.631137449 8.353085721 8.176007892 8.241067422 239986857 SMR_antibiotics Antibiotic resistance transporter Streptomyces roseosporus NRRL 11379 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces filamentosus; 8.546611443 8.50001798 8.535173915 8.002736987 7.807166549 8.10485229 8.081414811 7.763318963 7.80535676 7.695543049 8.002252236 23304849 xylanase Carbon cycling Carbon degradation Hemicellulose Clostridium stercorarium superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 9.383911135 9.422309534 9.403924368 8.820175108 8.436546503 8.794765871 8.399792069 8.377035315 8.694747649 8.662735531 8.830891159 8.989766228 186660318 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 8.63426383 9.050253698 9.100559593 8.239931935 7.992736241 8.211514774 7.874716146 7.876933234 7.997213817 8.028868402 8.279066401 8.399348062 239798034 fnr Stress Oxygen stress Desulfovibrio magneticus RS-1 9.311481349 9.333469731 9.455664625 8.803897195 8.921368455 9.000951149 9.081172249 8.895050128 9.192690171 8.946711304 9.232628303 8.99763578 112462895 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.340326366 7.978342524 8.406515512 8.163209574 8.491579288 8.108377739 8.186114742 8.679406762 8.467082972 8.604405182 8.321815194 8.397698539 224608195 pstA Stress Phosphate limitation Natrialba magadii ATCC 43099 8.328649226 8.178270483 8.34185424 8.517783439 8.220999056 8.01612863 7.807681509 8.286359619 8.242876151 8.359570421 8.086698883 8.32407883 239942013 sigma_24 Stress Sigma factors Streptomyces roseosporus NRRL 15998 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces filamentosus; 9.176479027 9.292758696 9.276982891 9.09061056 9.188620029 9.090915246 9.079738758 9.290235635 9.189586283 9.358306676 9.254911085 8.919583006 60683305 CopA Metal Resistance Copper Bacteroides fragilis NCTC 9343 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 9.483189444 9.386487899 9.490400515 8.914532933 8.761947422 8.674448206 8.941127791 8.519146717 8.436914547 8.640713085 8.532972449 8.900997643 114341341 mer Metal Resistance Mercury Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 8.776486098 8.389598362 8.703645847 7.355816588 7.729117343 8.004444658 8.21741923 7.829783314 8.409662041 8.051463261 8.021985997 8.146003161 19070024 silC Metal Resistance Silver uncultured bacterium superkingdom:Bacteria; 8.14800482 7.817023748 7.556635737 7.486945647 7.704917857 7.38372138 7.408864619 7.86424983 7.376049844 7.708200849 7.569019403 251783220 grpE Stress Heat shock Streptococcus dysgalactiae subsp. equisimilis GGS_124 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus dysgalactiae; 8.384266569 8.536178108 7.619311302 7.226499686 7.518633064 7.215807716 6.997425396 7.453225286 7.470846974 133910673 pimF Organic Remediation Aromatics Aromatic carboxylic acid Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 9.35308454 9.322471321 9.215809022 8.921124174 9.077422845 9.067697764 9.58779372 9.35499005 9.071015025 9.231141465 9.566942364 9.508163519 91783202 nagI Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.08488107 8.62229804 8.500819704 7.949163428 8.258660051 8.166484242 8.535699163 8.791991563 8.200770499 8.806491449 8.64258417 8.627904218 196478455 glnA Stress Nitrogen limitation Phenylobacterium zucineum HLK1 8.371021995 8.48197782 8.059922379 7.876365436 7.732545153 7.673866687 7.795600239 7.921024823 7.963481921 7.732421554 8.059264123 225047180 Tet Antibiotic resistance other Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 9.506405454 9.400389996 9.432912945 8.935160933 8.957070225 8.810723497 8.844765583 8.958869863 9.069119241 9.043622511 9.024620216 9.187884249 197934687 pchCF Organic Remediation Aromatics BTEX and related aromatics Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 9.054839823 9.247631699 8.87906353 9.183296999 8.96585681 8.89080809 8.798845461 8.637187501 91203328 TehB Metal Resistance Tellurium Candidatus Kuenenia stuttgartiensis superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;genus:Candidatus Kuenenia; 9.295987399 9.260029597 9.489726969 8.735623449 8.627699252 8.531151359 8.403585127 8.544415082 8.237292472 8.557399494 8.602603143 8.882496736 146278697 nifH Nitrogen Nitrogen fixation Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 9.521766018 9.386286757 9.575997171 8.988078311 9.044240063 8.916277146 8.858541779 8.96293993 8.882507553 9.018458911 8.876364528 9.175571061 iegHydrogenase30 hydrogenase Energy process Energy process 8.955450988 9.068097842 9.099085459 8.066582291 7.722895979 8.369954117 7.802575155 8.252156418 7.823622662 7.814282767 8.11663117 33599266 nahA Organic Remediation Aromatics Polycyclic aromatics Bordetella bronchiseptica RB50 8.121396245 7.992052766 8.357247533 7.563381705 7.576463459 7.478549571 7.4623247 7.78466119 7.633086194 7.449237719 7.911248844 149173614 pcaG Organic Remediation Aromatics Other aromatics Planctomyces maris DSM 8797 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces maris; 8.224929615 8.330213882 8.222885011 7.8808342 7.739528866 7.543851752 7.476052101 7.524445615 68263062 pimF Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium jeikeium K411 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 8.62589232 8.13176563 8.345394891 8.378649678 8.119654134 8.411865088 8.431430285 7.905289039 8.033425735 8.057477844 258527492 pstB Stress Phosphate limitation Dickeya dadantii Ech586 8.05233749 8.061866731 7.781306765 7.482014687 7.402306555 6.937147451 7.484733243 7.712554476 7.288292187 7.43505594 7.246687272 256392461 sigma_24 Stress Sigma factors Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 8.503594184 8.093358193 8.196281781 7.902838809 7.809581757 7.91086242 7.754139989 7.933190211 7.83912666 7.868060687 8.049324831 157962564 pstB Stress Phosphate limitation Shewanella pealeana ATCC 700345 9.149622295 8.443582481 9.130042158 8.122336447 8.128575395 8.051039332 7.786293338 7.564945672 7.688298757 7.656084218 8.206584096 163735734 HBH Organic Remediation Aromatics BTEX and related aromatics Roseobacter litoralis Och 149 8.196662571 7.917378875 7.485095597 7.801142591 8.130403372 7.912427044 8.20333411 8.13517936 8.197668584 33237915 dnaK Stress Heat shock Prochlorococcus marinus subsp. marinus str. CCMP1375 8.792777128 8.934289661 9.038577009 7.811234257 8.203414613 221727934 nmoA Organic Remediation Aromatics Nitoaromatics Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.574396699 8.352853534 8.137301201 8.448953664 8.462570328 8.444384291 7.840499788 8.3831704 8.121745408 8.418258447 8.521228601 8.363697355 213966058 pcc Carbon cycling Carbon fixation Corynebacterium amycolatum SK46 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium amycolatum; 8.25395245 8.566919711 8.344117603 7.753373887 8.194927427 8.550472551 8.780135707 8.584828953 8.503736958 8.132455235 227311124 ahpC Stress Oxygen stress Denitrovibrio acetiphilus DSM 12809 superkingdom:Bacteria;phylum:Deferribacteres;class:Deferribacteres;order:Deferribacterales;family:Deferribacteraceae;genus:Denitrovibrio;species:Denitrovibrio acetiphilus; 7.907014062 7.698120567 7.708484932 7.166699555 7.367732566 7.932327763 7.46691396 7.497671461 7.298225908 89951652 sigma_24 Stress Sigma factors Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 8.547852652 8.608178625 8.60835706 8.560089716 8.47189615 8.695074947 8.581323468 8.77764287 8.70620588 8.849537451 9.044263984 8.601900695 49036602 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.007148954 8.138705141 7.752493027 7.230876923 7.247054841 7.111889029 6.84655071 7.752847021 7.134730091 6.911767422 7.301879127 118174679 nmoA Organic Remediation Aromatics Nitoaromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.903142241 8.910071948 8.758556873 8.323437107 8.231293553 8.416080305 8.606255834 8.14226088 8.523572375 8.059916082 8.122616009 8.318730854 149926943 sigma_24 Stress Sigma factors Limnobacter sp. MED105 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 9.185520253 9.031624977 9.273337425 8.507877677 8.399811998 8.603175506 8.028928777 8.096256752 8.324357058 8.419909617 8.641144969 113525436 Catechol Organic Remediation Aromatics Other aromatics Ralstonia eutropha H16 9.419318096 9.151032879 8.831919671 8.470474633 8.610575927 158316469 tfdA Organic Remediation Aromatics Chlorinated aromatics Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.473706599 8.350501557 8.050249533 8.189115376 7.621086309 8.094227406 8.350708744 7.906323345 8.294187704 7.911006681 8.003523313 7.69366189 188988849 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 7.558624929 7.486793208 7.426342997 7.103367464 7.283928555 7.365438083 7.317333419 7.046878301 7.298261099 51599200 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 8.50209635 8.704895123 8.826345673 8.556573316 8.233456152 8.292576024 8.871348286 8.879394008 8.423092464 8.521046845 8.32849776 211583152 merP Metal Resistance Mercury Penicillium chrysogenum Wisconsin 54-1255 8.430722512 8.210217946 8.436708337 8.059587695 7.991663385 7.890278338 8.048038392 8.216536371 8.278317556 8.206308449 8.440366321 8.377640333 85827488 fnr Stress Oxygen stress Roseobacter sp. MED193 8.40793604 8.37905736 8.412258276 8.10904703 7.981634507 7.998413057 7.757550903 7.765914973 8.23093927 7.795985259 7.715152761 7.898200663 118587776 nhh Organic Remediation Aromatics Nitoaromatics Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 8.054346359 7.949737261 7.853885464 7.412415933 7.198247012 7.086983853 7.606984073 7.537731564 7.268861589 7.473144429 881516 sigma_70 Stress Sigma factors Rhodobacter capsulatus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 9.371246708 9.725408954 9.640980871 8.862526138 8.978462552 9.024659867 9.626747285 8.992013114 9.526723348 8.99504536 8.821262258 9.006042617 123967436 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Sphingobium yanoikuyae 9.603569711 9.368293263 8.795951532 8.799554263 8.817292509 119468370 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Alteromonadales bacterium TW-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales; 8.258580051 8.232735089 8.214617586 8.441113114 8.002240566 8.39251246 8.402900883 8.327305101 8.41309689 8.508034522 8.273766257 261496842 fnr Stress Oxygen stress Mannheimia haemolytica serotype A2 str. OVINE 8.195807222 8.252675392 8.168748274 8.09769288 7.989217678 6.801680273 8.080304544 7.752089753 8.031315613 7.948283769 7.867104076 93356645 ChrA Metal Resistance Chromium Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.166203781 8.559557351 8.172031728 7.656969649 7.684716496 7.957848551 8.196104539 7.366947899 7.658339418 7.837758703 7.647182511 260430968 inv virulence invasion Silicibacter lacuscaerulensis ITI-1157 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria lacuscaerulensis; 8.687703832 8.65331931 8.581445207 8.799868874 8.827291013 8.737243021 8.581885694 8.767049505 8.774559892 8.806660922 148256784 exaA Organic Remediation Chlorinated solvents Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.993559662 7.845399269 8.152717197 7.173347408 7.28545502 7.402150906 7.368826976 7.016291435 7.866067302 7.303714392 7.320761894 7.655162727 115365025 PobA Organic Remediation Aromatics Aromatic carboxylic acid Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 8.67518912 8.737858071 8.581437466 8.864441641 8.77616264 8.709380364 8.600291684 9.34213934 8.607778949 8.692037869 8.876387835 8.548523104 162568551 aoxB Metal Resistance Arsenic uncultured bacterium superkingdom:Bacteria; 8.799253301 7.758111993 8.564051199 8.153971606 8.07741074 7.982562318 7.560377154 8.803851274 251844176 cda Carbon cycling Carbon degradation Starch Paenibacillus sp. oral taxon 786 str. D14 8.426901596 8.356049739 8.360494807 7.699865127 7.628151755 8.10266531 8.347884524 6.942831875 8.517252254 7.602627778 7.933374337 7.622069235 113909224 pulA Carbon cycling Carbon degradation Starch Shewanella baltica OS195 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 8.413337746 8.479221661 8.032657807 7.80749168 7.809261865 7.507034459 7.530765849 8.057613855 7.525280312 7.318425434 7.781076337 220905976 amyA Carbon cycling Carbon degradation Starch Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.73544079 8.83754997 8.774774602 8.447303804 8.618920181 8.268970463 8.073728053 8.229709815 8.394512179 8.361312476 8.103700505 8.472069125 167646279 CopA Metal Resistance Copper Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.699419193 8.261519258 8.306903104 8.309289647 8.212868598 7.717771764 8.25958086 8.012836777 8.202623289 7.865498891 8.076958944 7.980248503 78185150 SMR_antibiotics Antibiotic resistance transporter Synechococcus sp. CC9902 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.164048057 8.171281231 8.416901818 8.03371924 7.949389014 7.812359005 7.928926544 8.254113371 8.062695974 7.878533789 8.195314111 158424374 pulA Carbon cycling Carbon degradation Starch Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 9.002105691 8.899612727 9.084639597 8.623646625 8.59761805 8.628778644 8.305477404 8.474321612 8.336553057 8.386477251 8.464017108 8.718680476 85777065 amyA Carbon cycling Carbon degradation Starch Anaeromyxobacter dehalogenans 2CP-C 8.922085793 8.596350809 8.652963931 8.099249952 7.893747135 7.992622644 8.175665849 7.942480032 8.494536997 7.91730414 7.83023532 8.015721884 219720307 gyrB other category gyrB Stenotrophomonas sp. SKA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 8.432640411 8.561045808 9.010918053 8.691173072 8.664001981 8.401662949 8.635891328 9.34560347 8.65389095 9.013147316 9.004620412 9.304679028 255019592 MFS_antibiotic Antibiotic resistance transporter Acidithiobacillus caldus ATCC 51756 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 8.342500731 8.328999421 8.785120344 7.848929187 8.015242172 7.734106384 7.640768095 7.981513509 7.859321028 7.796650029 8.2254511 58040531 MFS_antibiotic Antibiotic resistance transporter Gluconobacter oxydans 621H superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter oxydans; 8.761670408 8.787786668 8.739400026 7.964065419 8.60104103 9.047944876 7.331723679 8.806294084 8.009222298 8.21444578 8.015738726 133910050 4HBH Organic Remediation Aromatics BTEX and related aromatics Saccharopolyspora erythraea NRRL 2338 9.77054292 10.31081839 9.884047797 9.608277341 9.951311577 10.15673143 10.02516152 9.874177165 10.33739547 10.19671828 10.0795601 10.41142997 197626882 obgE Stress Radiation stress Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 9.704605807 9.950442935 10.10163881 9.078751359 9.08131406 9.150527262 9.476476245 9.076427399 9.637353216 9.107438681 9.071192791 9.246645643 110818384 tftH Organic Remediation Aromatics Chlorinated aromatics Rhodococcus jostii RHA1 8.559552934 8.909232294 8.679694099 8.717765623 9.183289859 8.899986016 9.278928713 9.052334645 8.979249326 8.939106655 8.548051229 8.753210806 241196302 ahpF Stress Oxygen stress Bifidobacterium animalis subsp. lactis DSM 10140 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 8.522557883 8.406141052 8.475401328 8.365121335 7.731284946 8.052939164 8.028551986 8.100546865 8.313779984 8.293595145 8.11623618 255293275 sigma_24 Stress Sigma factors Propionibacterium sp. oral taxon 191 str. F0233 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acidifaciens; 8.323573929 8.262591848 8.502060017 7.93901447 7.936141506 7.766104329 7.604639827 7.126788048 7.697059641 7.341648898 7.864136361 212678702 nagI Organic Remediation Aromatics Aromatic carboxylic acid Providencia rustigianii DSM 4541 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 9.553907475 9.32845406 9.513318459 9.129012562 9.489314636 8.813921082 9.097805435 9.256622531 9.389708792 9.121628752 9.327807714 9.416360083 161784489 katA Stress Oxygen stress Gluconacetobacter diazotrophicus PAl 5 9.665730685 9.14220999 8.377178793 8.654476483 8.90252444 8.568905408 8.595112598 8.751337121 8.416535184 8.827536148 8.64951654 118502217 pstB Stress Phosphate limitation Pelobacter propionicus DSM 2379 8.842382875 8.757190906 8.691713981 8.694907243 8.637832534 8.346460113 8.692589539 8.863468794 8.733760426 8.880131772 8.696747899 8.837841425 182435063 fnr Stress Oxygen stress Streptomyces griseus subsp. griseus NBRC 13350 8.806072339 8.439216587 8.714810994 8.644765478 8.584173975 8.438684274 8.676999895 8.772838423 8.463753025 8.783908148 8.520011091 8.678944301 145217977 nhh Organic Remediation Aromatics Nitoaromatics Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.248353287 8.274849119 8.406368051 8.288795065 8.304655812 8.291920569 8.412432841 8.440799187 8.4752223 8.53279026 8.593038621 8.470786821 251791058 sigma_70 Stress Sigma factors Dickeya zeae Ech1591 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 8.248621875 7.947231523 8.056532756 8.129792383 8.281223956 7.818824048 7.431369359 7.445208875 8.003817858 7.600568051 7.394543324 7.617193693 86283138 4HBH Organic Remediation Aromatics BTEX and related aromatics Rhizobium etli CFN 42 8.223818561 8.232402776 7.914635292 7.857339258 7.840288687 7.697900804 8.07026607 7.981596795 7.771991726 7.905623641 8.021265202 121555140 pimF Organic Remediation Aromatics Aromatic carboxylic acid Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 8.554248859 8.609553372 8.672699639 8.223507129 7.68551466 8.334046447 8.43247144 8.147181144 8.556563866 8.286778731 8.375996056 8.107747864 134102232 CorC Metal Resistance Cobalt Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 8.976504888 9.052843336 9.224586034 8.961492549 8.894510348 8.769955756 8.444333408 8.807894376 8.522532404 8.799118471 8.888640232 8.803300439 153813974 exochitinase Carbon cycling Carbon degradation Chitin Ruminococcus torques ATCC 27756 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus torques; 6.886143264 6.940183257 7.364334636 6.833151304 7.591036856 84684965 phoB Stress Phosphate limitation Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 9.565581826 9.638898859 9.625622231 9.059333352 8.770314891 8.926168653 8.946485875 8.859794935 9.012968852 8.914003986 8.947956482 9.194637034 157913818 BchY other category chlorophyllide reductase Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 8.370199231 8.181120649 8.623161412 8.694046819 8.263615702 8.556425847 8.540513175 8.30344565 8.259157719 8.047480617 8.112024829 48927357 silC Metal Resistance Silver Stenotrophomonas maltophilia superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 9.215736485 9.274803291 9.332364635 8.746371098 8.962319079 9.065049534 9.53982386 8.595645333 9.554984222 9.148042607 8.988599742 9.096714539 115374823 ChrA Metal Resistance Chromium Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 8.350573163 8.173375049 8.163878599 8.383140029 8.099571002 7.914111426 7.828625393 8.206664413 8.384861443 8.08339535 7.797838618 8.064685661 146304749 pimF Organic Remediation Aromatics Aromatic carboxylic acid Metallosphaera sedula DSM 5348 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Metallosphaera;species:Metallosphaera sedula; 9.071855281 8.785345459 9.130783833 8.664608512 8.476429167 8.136844212 8.166908015 8.034131527 8.066279404 8.334771185 8.591815388 71905239 nifH Nitrogen Nitrogen fixation Oscillochloris trichoides superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Oscillochloridaceae;genus:Oscillochloris; 8.187089291 7.962117484 7.50590885 8.041094746 8.050774725 8.213003458 7.89946778 7.826277637 7.461680059 148503424 Catechol Organic Remediation Aromatics Other aromatics Sphingomonas wittichii RW1 8.379928552 8.47980582 8.894746329 8.994904747 8.726082176 8.405836304 8.630100223 9.340337948 8.629393694 9.113322964 8.73252065 9.218255435 119898137 tomA Organic Remediation Aromatics BTEX and related aromatics Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8.54253985 8.230838516 8.338082106 8.066977298 8.308506568 8.566096493 8.698510768 8.083765352 8.966485721 8.360047363 8.078699277 8.291335314 270277187 Tet Antibiotic resistance other Bifidobacterium gallicum DSM 20093 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 10.68382699 10.87067648 10.76254585 9.710855227 10.37677728 10.60915385 10.92803487 9.874759668 11.08349372 10.37642858 10.12862696 10.45724072 262086917 narJ Stress Oxygen limitation Gordonia bronchialis DSM 43247 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 8.599883711 8.702091033 8.447667589 8.674096167 8.97091825 8.963568554 9.102450636 9.116227762 9.068682414 9.305879701 9.303586726 9.011204248 91200182 hzo Nitrogen Anammox Candidatus Kuenenia stuttgartiensis 9.177034265 9.123288437 9.202017083 8.102726617 8.272185245 7.962188297 8.384341315 7.864035609 8.572327961 8.11222312 153894693 CopA Metal Resistance Copper Halorubrum lacusprofundi ATCC 49239 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 8.908228336 8.853788842 9.099219129 8.684429454 8.687715161 8.732511476 9.247264326 8.79056236 9.355807934 8.795654135 8.760790509 8.476394035 254983414 cytochrome Energy process Energy process Geobacter sp. M18 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 9.143685724 9.023179401 8.996775872 9.453188991 9.347685932 9.258451664 8.995126776 9.510854926 8.881634776 9.429430104 9.347536024 8.80287688 193211829 obgE Stress Radiation stress Chlorobaculum parvum NCIB 8327 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum parvum; 8.677828361 8.495059017 8.179316601 8.126401862 8.00393294 7.82907477 8.461440872 8.233895416 8.330669808 8.178007614 8.255718795 55377154 SMR_antibiotics Antibiotic resistance transporter Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 8.530185679 8.598925621 8.556156216 8.337315567 8.352117236 8.514817173 8.157071321 8.738987243 8.539600364 8.694912645 8.427464644 8.318637986 170777475 catechol_B Organic Remediation Aromatics Other aromatics Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 7.136510784 7.214743389 7.199593181 260649700 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Streptomyces scabiei 87.22 8.575589043 8.733695065 8.314131668 8.143752995 8.130230347 7.956388404 8.44851822 8.295086933 8.410088449 8.418377983 8.671415347 214042948 phn Organic Remediation Herbicides related compound Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.397756305 8.572091198 7.945459386 8.36392754 7.698185019 8.148426566 8.038459015 8.0812406 8.412627429 8.20261684 7.78273724 89056342 CopA Metal Resistance Copper Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 9.895029641 9.555138094 9.607587211 9.299873524 9.380167665 9.25445051 9.356253657 9.580107989 9.460225063 9.71585603 9.853270185 9.296241714 256038311 pstC Stress Phosphate limitation Chitinophaga pinensis DSM 2588 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 8.114546379 7.930983759 7.237071368 7.210779373 7.227456756 6.816753188 7.348720339 38906707 ChnE Organic Remediation Other Hydrocarbons Rhodococcus sp. TK6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.844462551 8.957673779 8.962590819 8.559272057 8.374205907 8.29420557 8.395272754 8.530874346 7.986314301 8.564608887 8.507138057 8.252381674 258521599 proV Stress Osmotic stress Corynebacterium genitalium ATCC 33030 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium genitalium; 8.149351662 8.513054478 8.479598625 8.140317081 8.045869275 8.433645368 8.742585358 8.497958774 8.783137745 7.949972123 8.107254196 7.957526957 116050225 arsB Metal Resistance Arsenic Pseudomonas aeruginosa UCBPP-PA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.683901688 8.781462363 8.965266377 9.074144611 9.0605148 8.998004168 8.901221759 9.355868636 8.71470054 9.023274235 9.099093782 8.594613466 25169134 hdnO Organic Remediation Aromatics Heterocyclic aromatics Arthrobacter nicotinovorans superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8.316293704 8.048548643 8.12788129 8.139318537 7.887775075 8.061593287 8.556008537 8.44811474 8.290052744 8.068643779 8.015775679 27349259 sox Sulphur Sulphur oxidation Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.720772757 8.40050785 8.381282794 8.642306888 8.579593045 8.338496925 8.405311658 8.754002954 8.519543811 8.704926591 8.727412071 8.282522315 118731620 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.696394287 8.707378568 8.65777413 8.386553508 8.316219729 8.19141472 8.291050954 8.176874154 8.314884736 8.278538953 8.156145282 8.291465678 170721195 nbzC Organic Remediation Aromatics Nitoaromatics Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 9.685655379 9.733698401 9.899107185 9.363162443 9.250624938 8.966228821 9.086979716 9.049163221 9.117580841 9.327823212 9.256668574 9.436217622 190711131 gyrB other category gyrB Lactobacillus casei BL23 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus casei; 8.60996558 8.436305156 8.586622671 8.3340394 8.312337462 8.251562231 8.670068688 8.801431687 8.562184143 8.645800856 8.060666925 197302376 cda Carbon cycling Carbon degradation Starch Ruminococcus lactaris ATCC 29176 8.406784537 8.006917792 8.22154438 7.707356717 7.492550469 7.650912306 7.370010782 7.27059726 8.038452445 7.518135781 7.485451846 7.642166009 261855188 sigma_32 Stress Sigma factors Halothiobacillus neapolitanus c2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Halothiobacillaceae;genus:Halothiobacillus;species:Halothiobacillus neapolitanus; 9.587566124 9.44485505 9.326237977 8.994613527 9.059559722 8.993817245 9.160603848 9.258679478 9.002431762 9.420062077 9.420269877 9.389707384 89512616 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 9.297417083 9.290923483 9.224699141 8.61555801 8.613166379 8.702003677 8.857169941 8.645822212 8.950291633 8.616884243 8.684650211 8.76334264 160897162 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.280377259 8.251769615 8.423618648 8.21002397 7.811554926 8.129091363 7.871414257 8.453259851 8.149217054 8.238150973 8.396509222 110818645 AceA Carbon cycling Carbon degradation others Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.452795017 8.630849878 8.657336819 8.671821419 8.563676789 8.145680779 8.806073218 8.395014625 8.64760643 8.393323158 8.491867635 119668972 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8.26900688 8.122183323 7.955422936 7.853787746 7.757431603 7.568179519 8.189983993 8.043496832 8.274079037 8.151581766 7.889137975 118029566 vanA Carbon cycling Carbon degradation Others Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 9.230832006 9.139766528 9.201850689 8.341211561 8.512852432 8.579588926 8.555324212 8.372008583 8.681915023 9.103641437 9.191135611 9.043852052 224823769 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Lutiella;species:Lutiella nitroferrum; 9.215314965 9.04335094 8.872993145 8.889300732 8.670235184 8.525548897 8.594157967 8.79499297 8.734558214 8.781532803 8.662728892 8.683204291 3511233 benAB Organic Remediation Aromatics Aromatic carboxylic acid Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 8.347378175 8.335672953 8.44909037 7.732107016 7.518127975 7.418279215 7.071035413 126032285 endochitinase Carbon cycling Carbon degradation Chitin Hypocrea jecorina superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 8.382596827 8.750067465 8.751631339 8.01541794 8.038531998 8.706396282 8.737548476 8.328904503 8.477607349 8.59046935 8.255371641 8.722518729 86281623 nagG Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.024427721 7.975861049 8.148188877 8.107380319 7.999460407 7.529723791 7.968875695 7.965001252 7.797684583 8.298503227 7.609502328 260937381 pilin virulence pilin Vibrio orientalis CIP 102891 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 7.706267062 7.493944571 7.610161511 146409297 phn Organic Remediation Herbicides related compound Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.913586179 8.951504701 8.868619956 8.640622606 8.724370894 8.412541701 8.567415572 9.137402974 8.876937819 8.921895002 9.057162726 9.047442603 218750914 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.18764046 8.073581521 7.667055217 8.007902347 7.940105553 8.067237315 8.016844762 8.209818857 8.095863347 8.083469633 7.96937689 158439606 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 9.08233299 9.022327663 9.029924717 8.317524485 8.832078861 9.06431623 8.473691497 9.115606169 8.762778988 8.679825841 8.783098048 121590136 dsrA Sulphur sulfite reductase Halorhodospira halophila SL1 8.129101665 7.97287062 7.620018847 7.883318521 7.867887016 8.220125248 7.851728913 7.768948079 7.577954729 247545929 ureC Nitrogen Ammonification Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 8.996699501 8.687244906 8.812551023 8.565049359 8.355487579 8.413021695 8.050845304 8.316379121 8.004211515 8.364240616 8.411471287 8.79096222 228015267 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.773129778 8.714642409 8.843597766 8.751945621 8.535478297 8.309482301 73543114 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.525694272 8.060247492 8.531047833 8.215017741 7.929791065 8.040783599 8.31918596 8.232401331 8.195950193 8.10628809 8.301639894 14289338 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. 19070 9.921440057 10.2360932 10.11605038 10.45030023 10.55009272 10.3937878 10.55789405 10.44295916 10.27956742 10.65687062 10.56970146 9.939832741 142230 cellobiase Carbon cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 9.014455549 9.100014286 9.107212217 8.751440944 8.367522732 8.357813647 8.20424597 8.408554255 8.470177812 8.4329321 8.47535585 8.728066875 117989543 nhh Organic Remediation Aromatics Nitoaromatics Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 9.320528034 9.072287539 9.179935222 8.644823753 8.35598862 8.57696137 7.848607525 8.101283349 8.155940981 8.49339263 8.510241926 8.670160672 34017056 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 7.777829254 7.88821163 7.709638375 7.802498088 7.55163698 7.741789871 7.491032647 7.632900856 7.065940363 113528998 xylJ Organic Remediation Aromatics BTEX and related aromatics Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.748826359 8.618464793 8.847583627 8.324795177 8.342696949 8.104260658 8.308592922 8.116369843 8.111261517 8.261281349 8.226708199 218223832 katE Stress Oxygen stress Parabacteroides johnsonii DSM 18315 8.098462453 8.009177496 8.333463315 7.997999894 7.585203037 7.509950818 7.372703337 7.594142826 7.728634728 7.726160193 7.570358904 7.724212031 84666244 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 9.173526225 9.080937695 8.934159706 9.004558871 8.870975357 8.823949455 9.266538806 8.640662822 9.108709579 9.242338228 8.863925697 148570349 pstA Stress Phosphate limitation Roseiflexus sp. RS-1 9.835626705 9.703895102 9.844588671 9.012883866 9.020774982 9.098726829 9.396398053 9.083949955 9.404013697 9.220589598 9.200857276 9.209443074 169793464 narG Nitrogen Denitrification uncultured bacterium 9.336368164 9.182852292 9.304633039 8.419071301 8.210844174 8.787042138 8.853857263 8.445397761 8.882899237 8.496393726 8.588610394 8.914664658 116098633 pstB Stress Phosphate limitation Lactobacillus brevis ATCC 367 7.497082493 7.153881872 7.159650106 6.852147955 7.529797431 6.96051174 7.259082195 117927303 pstC Stress Phosphate limitation Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 8.613542751 8.275408572 8.739221658 8.199940784 8.072620978 7.976495474 7.977867764 8.522983528 8.07827117 8.379949309 8.087136874 8.474465781 74317155 pstC Stress Phosphate limitation Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 8.768424202 8.717129471 8.682718748 8.794359094 9.10127792 9.042095502 8.764549825 9.375348252 8.942631231 9.224122408 9.217733568 8.999571517 119537848 sigma_70 Stress Sigma factors Nocardioides sp. JS614 8.858344796 8.972919123 8.631441017 8.382056363 8.40674213 8.690033884 8.977631499 8.388334223 8.797300942 8.205002564 8.526888593 8.098602475 221724340 nmoA Organic Remediation Aromatics Nitoaromatics Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.627774425 8.382267685 8.741254504 8.570554364 8.559735924 8.215086632 8.281562151 8.714955044 8.451249022 8.729380005 8.400440932 8.575601582 198282308 mer Metal Resistance Mercury Acidithiobacillus ferrooxidans ATCC 53993 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 8.596009143 8.744678591 8.876011335 8.589689453 8.351830782 8.406330275 8.331607078 8.06766917 8.666728563 8.324166317 8.277828892 8.507399691 254281991 ppk Phosphorus Phosphorus utilization gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 9.312073472 8.793578408 9.027868086 8.631651558 8.861486126 9.50551543 9.125409631 8.728258393 8.516501376 8.602355894 8.662783572 89345087 sigma_70 Stress Sigma factors Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 8.486708829 8.550344521 8.508779418 8.542218851 8.546585498 8.053366085 8.28085894 8.168964716 8.516928272 8.307922038 7.826275416 7.983266903 67522228 ara_fungi Carbon cycling Carbon degradation Hemicellulose Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 8.252518316 7.962125557 8.394799531 7.950346184 8.162800494 8.106682843 7.685410444 7.928995932 8.067955826 8.109643854 7.864346377 7.737488744 227479908 SMR_antibiotics Antibiotic resistance transporter Acidobacteria bacterium Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 8.476300878 8.30089509 8.508013755 8.06320823 8.188776228 8.126924938 8.131855265 8.283188334 8.458218376 8.151039545 8.316132285 241871527 ctsR Stress Protein stress Weissella paramesenteroides ATCC 33313 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Weissella;species:Weissella paramesenteroides; 9.27771924 9.155451201 9.190458727 8.608534101 8.583796928 8.33941122 8.239243454 8.29851051 7.825757217 8.24286675 8.278120042 8.860915154 119374770 ArsC Metal Resistance Arsenic Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 9.580706918 9.215367648 9.153760227 9.433581392 9.016754654 8.68384198 9.328925632 9.383905659 9.3301498 9.320024475 9.122851369 9.135559201 83747336 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia solanacearum UW551 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 10.34638529 10.11658809 10.43172569 8.90613118 8.920893286 8.821748272 9.577490794 9.061479763 9.176334095 9.602626253 9.750890798 9.735567677 126627818 phn Organic Remediation Herbicides related compound Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 7.121441937 7.597740327 7.358721975 7.655157224 7.191483663 206564829 silC Metal Resistance Silver Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 9.419782463 9.676833691 9.706212267 8.596209449 8.876007246 9.00389637 9.051090719 8.415973667 9.088545015 8.771789847 9.101926362 9.041370324 212707791 nitA Organic Remediation Aromatics Other aromatics Providencia rustigianii DSM 4541 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 8.720508615 8.69530071 8.710155837 8.016073891 7.580838801 7.963914537 7.840567292 7.410876487 8.103864096 7.733118814 8.028264841 159179212 pnbA Organic Remediation Aromatics Nitoaromatics alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 9.412562056 9.274578379 9.054682361 8.599205605 9.098090644 8.61606768 8.662306758 8.58102767 8.719494714 8.392412262 8.470384874 8.493877501 54022124 ZntA Metal Resistance Zinc Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 8.67518912 8.609959869 8.870197674 8.161764191 8.313908453 8.09036702 8.228156985 8.376728967 8.519292154 8.259451632 8.546612841 88919569 CopA Metal Resistance Copper Acidiphilium cryptum JF-5 8.959654788 9.037191873 9.072300229 8.474907732 8.3645654 8.467491115 8.693968515 7.967797348 8.441872438 8.384841106 8.138584125 8.63116525 170747332 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 9.236397553 9.073768004 8.692361559 8.268967165 8.362849902 8.578020184 9.031507314 8.296636254 8.732885118 8.612076003 8.474931131 8.308326061 254952063 katE Stress Oxygen stress Dyadobacter fermentans DSM 18053 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 8.170691016 8.250067737 7.920306561 7.531217562 7.557053092 7.706798696 7.897159387 7.777101457 7.681047973 7.578789295 7.757723952 120402615 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 9.126923965 9.248591358 9.247583197 9.049162919 8.837973569 8.52466046 8.844791616 9.069435068 8.822147811 9.017199417 8.633524999 9.074647375 6900421 iro virulence Neisseria meningitidis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria; 8.401184685 8.509595129 8.586822742 8.679430891 8.78525842 8.657863896 8.485376618 8.743395746 8.501369011 8.915945807 8.831310609 8.449224097 196227513 exaA Organic Remediation Chlorinated solvents Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 8.676718301 8.746442295 8.55716333 8.300799376 8.306634836 8.595980141 8.578627297 8.389904208 8.707205376 8.488132221 8.340169947 8.497616937 163258542 nagG Organic Remediation Aromatics Aromatic carboxylic acid Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 8.694881722 8.827464526 8.690712335 8.69926062 8.486930347 8.138880754 8.58870465 8.812366738 8.880321311 8.611815911 8.596720055 8.567307159 114537676 pstB Stress Phosphate limitation Fulvimarina pelagi HTCC2506 8.056501368 8.371543222 7.754858856 7.802606247 7.83952433 7.802051387 7.818576716 8.006847355 7.871285898 8.010698425 219939239 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9.656388549 9.405967185 9.59043165 8.907533661 8.860458539 8.798753385 8.819166874 8.904661247 8.635446009 8.926190944 8.825938781 9.193690922 15612817 ureC Nitrogen Ammonification Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 8.823846388 8.835247067 8.94451997 8.136583717 8.156181182 8.241554351 7.813959057 7.591212297 8.149917761 8.153490763 7.88417592 8.130879775 73763002 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.776589644 8.822104536 8.505880153 8.621197682 8.45098565 8.788884836 8.766274601 8.496724299 8.762380499 8.43280506 8.552711728 8.299748569 116634803 narG Nitrogen Denitrification uncultured bacterium 9.173759655 9.110226573 9.332623804 7.758196222 7.427259028 206565052 Catechol Organic Remediation Aromatics Other aromatics Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 8.589383353 8.865046015 8.733144713 8.009557076 7.997756296 7.89185183 7.925861132 8.305257814 8.39446517 8.012081389 8.008617048 8.036788744 163746030 nhh Organic Remediation Aromatics Nitoaromatics Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 9.448212889 9.293051094 9.26819265 9.131842334 9.204102478 8.776953011 9.004229393 9.33448601 9.164968613 9.192883962 9.137555728 9.073918352 119116050 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.741149808 8.122474159 8.487838771 9.014419067 8.823861987 8.299419468 8.793090272 8.894703934 8.504660121 8.407746406 8.424849326 8.337922359 119384830 alkB Organic Remediation Other Hydrocarbons Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.441996319 8.497037239 8.564877371 7.939949925 7.928688958 8.092874287 8.428975993 7.80088883 8.052715266 8.183339899 8.145774797 157074838 trzN Organic Remediation Herbicides related compound Streptococcus gordonii str. Challis substr. CH1 8.283025147 8.157004302 8.267778979 7.628383004 7.490703953 7.505675672 7.198895163 7.477557651 7.802770123 7.226390002 7.401229309 7.498239984 6469467 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.5293826 8.536271323 7.894828965 8.71028852 8.447132844 8.674438152 8.452180744 8.346051251 8.35987447 8.42992503 8.07271116 68200092 nmoA Organic Remediation Aromatics Nitoaromatics Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 9.371565948 9.584382767 9.018377226 9.101290148 9.167256971 9.408021661 9.997475268 9.341352647 9.923952621 9.068028317 8.927134755 8.968610278 262222289 pilin virulence pilin Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;species:Grimontia hollisae; 8.727244481 8.614868068 8.6664805 8.122509412 7.88205885 7.794037448 7.744216497 7.859344047 8.159740376 7.789124341 7.450360387 7.999475455 219847595 TehB Metal Resistance Tellurium Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 8.238605256 8.25373244 8.179159346 8.70197687 8.31512388 8.22976572 8.519777205 7.591618451 8.873324921 8.396845711 7.900663266 227368897 sigma_24 Stress Sigma factors Chryseobacterium gleum ATCC 35910 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Chryseobacterium;species:Chryseobacterium gleum; 8.328725476 8.158030508 8.336897281 7.443838622 7.192329977 7.265897551 7.314021393 7.140575778 7.583029547 72384105 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.694571005 8.510663426 8.559332772 8.084002971 6.93151647 6.864925879 6.937489294 7.417933056 7.535415869 7.343032215 7.672403853 187928452 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia pickettii 12J 9.423256748 9.589683918 9.413251115 9.593990209 9.622573348 9.257595036 9.662688598 10.12907062 9.86211104 9.885645557 9.540374378 9.812857402 161389834 fnr Stress Oxygen stress Phaeobacter gallaeciensis BS107 9.285298477 8.75549133 8.331548227 8.971929132 8.59280653 8.674482625 8.627310145 9.17235902 8.942667882 9.38333273 8.688574509 1592211 glucoamylase Carbon cycling Carbon degradation Starch Methanocaldococcus jannaschii DSM 2661 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanocaldococcaceae;genus:Methanocaldococcus;species:Methanocaldococcus jannaschii; 8.917112204 8.740693459 8.820829863 8.067938482 7.978278155 8.048262249 7.345918193 7.30353556 8.083425151 8.290351754 8.326048372 8.261228086 94971855 pcaG Organic Remediation Aromatics Other aromatics Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 9.75676564 9.809264357 9.754218315 9.706798603 9.491055547 9.162974344 9.228295909 9.698024491 9.338105548 9.552690796 9.523873377 9.721470834 115430534 rd Organic Remediation Chlorinated solvents Desulfitobacterium dichloroeliminans superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium; 8.434511713 8.569449466 8.550937805 8.062824324 8.085316141 8.137494063 7.95957314 7.524654594 8.375317119 7.994175959 7.859796199 8.23085766 117925649 CopA Metal Resistance Copper Magnetococcus sp. MC-1 superkingdom:Bacteria;phylum:Proteobacteria;genus:Magnetococcus; 9.939740218 9.589804132 9.577823992 9.609133988 9.344860478 8.847501392 9.517389814 9.72811467 9.504780353 9.437336326 9.402425072 8.999737745 92112905 glnA Stress Nitrogen limitation Chromohalobacter salexigens DSM 3043 9.249902361 9.154824655 9.370520233 8.870710156 8.743563515 8.758833192 8.609314408 8.599879222 8.562104659 8.689716448 8.728221469 8.815246985 257148160 desK Stress Cold shock Lactobacillus rhamnosus GG superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 8.860506397 8.72953288 9.016724165 8.496742563 8.430578682 8.509316054 8.50233872 8.616363783 8.525988931 8.7004104 8.744334529 8.840274878 157404569 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 8.578630502 8.397283255 8.495851507 8.096377873 7.98661726 7.994746631 7.779351968 8.057374629 8.279757323 8.229332596 7.991579963 8.15947345 228567962 pstC Stress Phosphate limitation Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 8.754067281 8.859361288 9.043023978 8.489639539 8.573008416 8.353359431 8.277733694 8.367835537 8.457943668 8.526811232 8.380603536 8.46558697 67159151 tfdA Organic Remediation Aromatics Chlorinated aromatics Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 8.582350952 8.311101578 8.891656692 9.044431649 8.893344419 8.504068038 9.180570697 8.412720148 8.944640361 8.69692733 9.075159837 33576186 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bordetella bronchiseptica RB50 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella bronchiseptica; 8.882617379 8.675652519 8.298386955 8.676469326 8.476930118 8.286079552 8.886831333 8.562060776 8.67335997 8.510085536 8.286773333 8.384338005 87311919 amyA Carbon cycling Carbon degradation Starch Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 8.311048456 8.236526365 8.661855702 8.50764935 8.567342332 7.960802616 8.580347727 8.26450058 8.260981994 8.444678806 8.14283382 37925891 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.175687971 8.066134403 8.11301808 7.669961784 7.65583033 7.684865891 7.865062211 7.699975882 8.010125036 7.800480829 7.768616954 7.860752047 111023898 ahpC Stress Oxygen stress Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.383364374 8.175706919 8.266009502 8.544477531 8.141806217 7.698336809 8.148114428 8.090369364 8.489549069 7.784925638 7.863828992 7.735986542 6066876 dmsA Organic Remediation Others Yersinia pestis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia; 8.934620642 9.262017428 8.807701153 8.668677861 8.830953576 9.445409159 9.499262847 9.067323323 8.892727706 8.936910244 9.244692189 8.864069114 208605076 hao Nitrogen Nitrification uncultured planctomycete 8.575484774 8.754485404 8.324120917 8.14223716 8.059963111 7.540957384 7.362431629 7.883514846 7.70080767 7.957289151 15158740 xylA Carbon cycling Carbon degradation Hemicellulose Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.163125986 8.578977989 8.564255838 8.190559303 8.193454612 8.164501575 8.217602017 8.436855144 8.411074741 8.836915061 8.421568694 8.281109443 194682750 MATE_antibiotic Antibiotic resistance transporter Proteus mirabilis HI4320 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 9.224889084 9.080433864 8.751493913 8.572845362 8.480315806 8.197244308 8.294747391 8.250300408 8.195600295 8.594318242 209695454 nrfA Nitrogen Dissimilatory N reduction Aliivibrio salmonicida LFI1238 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Aliivibrio salmonicida; 6.866503021 7.188403934 6.78673116 7.196171744 119456953 pstC Stress Phosphate limitation Lyngbya sp. PCC 8106 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Lyngbya; 8.885363927 8.772792886 8.93167485 8.438625166 8.204258984 8.247221108 8.187057414 8.340978593 8.209134086 8.458896803 8.377655353 8.537439694 107028634 iro virulence Burkholderia cenocepacia AU 1054 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 8.433404796 8.471428172 8.575120484 8.375524679 8.320197687 8.351708767 8.901591946 8.327382183 8.909075717 8.878715807 8.819668832 83643975 atzB Organic Remediation Herbicides related compound Hahella chejuensis KCTC 2396 9.403386951 9.053329624 9.464212809 8.735628991 8.699506255 8.600893288 8.519002267 8.3518368 8.58672424 8.499461695 8.871572656 150846171 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 9.02220947 8.967106546 9.008033869 8.252680232 8.839417598 9.099729004 9.231804045 8.914739431 9.195026663 9.335185185 9.373075263 9.463867095 117582119 endochitinase Carbon cycling Carbon degradation Chitin Chaetomium cupreum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium; 8.72759001 8.393191991 8.252428158 8.006891321 8.241055241 8.61446028 8.323502745 8.502763638 8.415937288 8.51746188 8.792244292 8.391562798 116748019 nitA Organic Remediation Aromatics Other aromatics Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 8.955226829 8.78191876 8.697706324 8.592953124 8.450421306 8.345164425 8.385812 8.383316143 8.403470628 8.310717632 8.377240787 8.317983585 237501608 oxyR Stress Oxygen stress Tolumonas auensis DSM 9187 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Tolumonas;species:Tolumonas auensis; 9.454281573 9.27264396 9.511250745 8.706309398 8.083864122 8.593965849 8.468887618 8.323580302 8.531930146 8.660454428 8.569115477 8.839650761 87120232 grpE Stress Heat shock Marinomonas sp. MED121 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 8.122172424 7.62236142 7.842512366 7.583927092 7.186945939 7.326193152 7.379488856 110678172 fnr Stress Oxygen stress Roseobacter denitrificans OCh 114 8.359256077 8.418961792 8.333572339 8.366952523 8.237743019 8.128097855 8.038847638 8.329453668 8.296937351 8.250773294 8.103195649 8.342187849 149912493 oxyR Stress Oxygen stress Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.481469289 8.355263534 8.380852783 8.532570509 8.248573847 8.336574242 8.455200017 8.243999787 8.364118439 8.302692642 8.221935945 159046019 PobA Organic Remediation Aromatics Aromatic carboxylic acid Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 8.037485484 8.308906552 7.900010827 7.596929066 7.48281026 7.353958833 7.381745108 7.806271143 7.74020461 7.242175712 7.577918489 126628241 CopA Metal Resistance Copper Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 9.451754322 9.599827402 9.475062219 8.916931849 9.278763026 9.198724908 9.764226699 9.53417678 9.193756942 9.573588101 9.736257183 9.639230814 27348707 Arylest Organic Remediation Aromatics Other aromatics Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.879720406 8.926395769 8.915233326 9.070175937 8.711623784 8.474392721 8.687277747 9.026376511 9.030278446 8.942568213 8.472213772 8.8824651 209964673 gyrB other category gyrB Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 8.750415893 8.74614141 8.558897652 8.068575333 7.812709739 8.312700473 8.491071433 8.162150514 8.445186594 8.393531968 8.638256104 8.371649157 226718049 ureC Nitrogen Ammonification Azotobacter vinelandii DJ superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 10.06200247 9.970063121 9.928959702 9.257015136 9.184545654 9.170916124 9.089320612 8.895147443 9.207998109 9.074385946 9.205476631 9.338624853 269838207 sigma_24 Stress Sigma factors Sphaerobacter thermophilus DSM 20745 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 8.762405916 8.381675967 8.619295486 8.135800124 8.294321725 8.301335461 8.14314112 8.324120659 8.276679233 8.341543697 8.362207268 8.243286686 120553789 obgE Stress Radiation stress Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 9.34679112 9.274201304 9.543326315 8.799149154 8.711028162 8.713638955 8.539954229 8.673328238 8.504818008 8.722268068 8.787527701 9.071803234 145570245 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas stutzeri A1501 8.356051708 8.604990338 8.39914415 8.52610065 8.718657738 8.733897886 9.246971415 8.759783239 8.976119817 8.885125237 8.810004184 8.605437417 187725034 sigma_38 Stress Sigma factors Ralstonia pickettii 12J 8.964149037 9.153366567 9.156871865 8.962477642 9.075614259 9.30752181 9.066976538 9.098008044 9.110726241 8.895187405 9.387752556 9.057913479 270332484 obgE Stress Radiation stress Prevotella bergensis DSM 17361 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bergensis; 8.992084329 7.948735708 8.375910066 8.209929525 8.203557703 8.379322746 8.673825294 7.830336488 224824411 proV Stress Osmotic stress Lutiella nitroferrum 2002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Lutiella;species:Lutiella nitroferrum; 8.683520683 8.691124806 8.644236628 8.443891767 8.893029048 8.558311575 8.439699171 9.058204182 8.326762003 8.713089501 8.836498512 8.942757914 146408100 catB Organic Remediation Aromatics BTEX and related aromatics Bradyrhizobium sp. BTAi1 8.668994648 8.617685996 8.875308092 8.392221946 8.478527402 8.311955173 8.235099519 8.158860998 8.316751216 8.267639116 8.347966112 8.445137526 88791778 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 8.550478438 8.464085171 8.320706366 7.835348411 8.215332515 7.990933413 8.185352882 8.151883229 7.701051747 14324437 ahpC Stress Oxygen stress Thermoplasma volcanium GSS1 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermoplasmata;order:Thermoplasmatales;family:Thermoplasmataceae;genus:Thermoplasma;species:Thermoplasma volcanium; 8.922564945 8.494123638 8.896842233 8.19418672 8.090665741 8.060834297 7.561255244 7.859057418 8.049226529 7.948824341 7.923523339 8.286759825 15130900 phytase Phosphorus Phosphorus utilization cf. Ceriporia sp. CBS 100231 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Ceriporia; 9.224461014 8.951360266 8.79490408 8.560796439 8.688024337 9.047812077 8.987127397 9.10209905 8.924398993 9.179949947 8.988471924 139478491 mer Metal Resistance Mercury uncultured soil bacterium superkingdom:Bacteria; 8.540058052 8.419446217 8.435603522 8.180857038 8.036794632 8.287318468 8.649586632 8.345144262 8.314623623 8.610525571 8.374478816 151302177 APS_AprA Sulphur adenylylsulfate reductase Desulfovibrio sulfodismutans 9.209891195 9.244371094 8.8167466 8.686711877 8.200360058 8.373976873 8.185733719 8.381106717 8.63741685 8.399484859 259034058 proV Stress Osmotic stress Mesorhizobium opportunistum WSM2075 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 8.788482414 8.990808767 7.967483556 8.178240897 8.057084218 8.186041791 8.294308905 7.939517466 8.377357404 8.267272057 8.331860181 194337338 dsrA Sulphur sulfite reductase Pelodictyon phaeoclathratiforme BU-1 8.189888294 8.309630881 8.332476444 7.593838393 7.480710504 7.436941505 7.393108687 7.319713494 7.347772137 7.366230183 7.335538018 7.675050934 110630500 nifH Nitrogen Nitrogen fixation uncultured soil bacterium superkingdom:Bacteria; 7.926488418 7.905333779 7.484735835 7.225382868 7.195861358 6.992531827 7.16594122 7.65039925 7.296657088 7.109690304 7.499886312 89346104 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 8.681847833 8.620843248 8.720320218 8.374600517 8.797314203 8.455958816 8.517167049 8.915184983 8.391051062 8.527129773 8.585626531 8.669350003 121305736 ctsR Stress Protein stress Thermosinus carboxydivorans Nor1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Thermosinus;species:Thermosinus carboxydivorans; 8.538289265 8.432208938 8.453276218 8.119104855 8.122293974 8.041063738 8.339626858 8.345761199 8.237401452 8.324657517 8.334148735 8.388815899 260900953 type_III_secretion virulence secretion Vibrio parahaemolyticus AQ4037 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.963523061 7.90263289 7.521203791 7.754259372 7.546266306 7.7498541 7.192307974 7.720485757 7.241910769 7.299880438 6.918219228 212633318 glnA Stress Nitrogen limitation Shewanella piezotolerans WP3 9.003684475 9.036404237 9.047257068 8.420040481 8.227329677 8.273194408 7.856793386 7.85394315 8.187758392 8.081643538 8.00142337 8.261392249 84690192 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Parvularcula bermudensis HTCC2503 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 8.71127856 8.661494057 8.952537242 8.25988233 8.193418238 8.089442002 8.527638503 8.125800667 8.681023144 8.040580877 8.292762715 8.3005741 22036058 cumA Organic Remediation Aromatics Other aromatics Rhodococcus sp. YK2 9.32193785 9.201193599 9.100644754 8.713552379 8.489019034 8.269304466 8.843181542 8.851154711 9.012211872 8.594268878 8.503979428 8.577209758 118579103 sigma_32 Stress Sigma factors Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 8.577694503 8.722646422 8.490595897 8.319323051 8.572504442 8.714780978 8.546949322 8.419513396 8.725817921 8.655733435 8.437949589 8.558813765 209960242 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 9.832601278 9.803204577 9.480935691 9.835584113 9.699504785 9.754779301 9.667611184 9.845426376 9.902913697 9.893542347 9.997208217 9.938167548 25029488 sigma_24 Stress Sigma factors Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 8.395261985 8.590252154 8.660050813 8.057836188 7.720703455 7.695517298 7.804441347 7.929643675 8.034263668 8.144845484 8.016930718 7.984461082 255331537 pstA Stress Phosphate limitation Geobacillus sp. Y4.1MC1 8.345786276 8.553457492 8.231923354 8.224641872 8.055652504 7.984627411 8.179019967 8.422782802 7.890328015 8.091448466 149125957 xylJ Organic Remediation Aromatics BTEX and related aromatics Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 8.753001318 9.050325056 8.993620057 8.744998676 8.86011697 8.601004584 8.186841297 8.537347444 8.494226863 8.434518374 8.790904077 253575706 obgE Stress Radiation stress Paenibacillus sp. oral taxon 786 str. D14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 8.869711502 8.847138861 9.517438058 8.417319626 8.216546988 8.535603359 8.454417191 8.533217751 8.44229109 8.520466149 8.713011543 8.807165731 218270187 CopA Metal Resistance Copper Clostridium hylemonae DSM 15053 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 9.103614981 9.427869414 9.499112417 8.717038648 8.190014822 8.822691743 8.813190565 8.417358254 8.492950985 8.707455347 8.576344314 8.761639615 29652498 narG Nitrogen Denitrification uncultured bacterium 8.689925053 8.088546536 8.232658244 8.247063722 8.146950468 8.117042852 8.035835824 8.184028249 8.284703357 8.23910064 8.031731759 119226150 gyrB other category gyrB Nocardia farcinica superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia; 9.159498472 9.110465525 8.867609398 8.880747203 8.973730093 8.774251937 8.667343006 8.800040735 8.782043067 8.873725761 8.984433572 117928077 TerC Metal Resistance Tellurium Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 9.259190096 9.322302197 9.193311567 9.133186966 9.304934317 8.96936959 8.910644723 9.230656752 9.136412803 9.319189207 9.464153523 9.100989582 227548038 B_lactamase_C Antibiotic resistance Beta-lactamases Corynebacterium lipophiloflavum DSM 44291 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium lipophiloflavum; 8.433885501 8.42898922 8.736051927 7.956306123 8.071235841 8.157486437 8.368432209 7.854033972 8.423506936 7.839128991 8.167125928 7.925858429 194683721 TerD Metal Resistance Tellurium Proteus mirabilis HI4320 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 8.029751056 8.020522008 8.259935648 7.474102892 7.32594201 7.348735312 7.157561089 7.300227653 84683974 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.532062177 8.820374653 8.447915175 8.129779982 7.941424748 8.667548537 8.867239 8.349332717 8.854323632 8.000667553 8.126353261 8.275980622 83316700 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.232279603 7.361502264 7.545888123 6.978001106 8.154696917 7.103327747 7.154051587 7.869809604 187727841 mer Metal Resistance Mercury Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.357360228 8.234716794 8.375307875 8.248970372 8.272309679 8.169503478 8.067788347 8.085700712 8.025149374 19909563 gyrB other category gyrB Aquaspirillum itersonii superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Novispirillum; 8.906373571 8.621324371 8.634600277 8.579842291 8.601746012 8.348631495 8.463034185 8.754060253 8.764717736 8.675455919 8.461102791 8.457212884 119868757 pcc Carbon cycling Carbon fixation Mycobacterium sp. KMS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.177190314 8.480871386 7.997011869 8.531220724 8.710397949 8.331811065 8.505366498 8.730331886 8.509164546 8.48274043 8.592431985 8.312532015 54016526 catechol_B Organic Remediation Aromatics Other aromatics Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 8.322509728 8.716404481 8.434725997 7.591794771 8.113385028 8.409336866 8.646150575 8.260621804 8.456942576 7.933359357 7.92012905 158331908 phn Organic Remediation Herbicides related compound Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 8.492309668 8.292006217 8.374693143 8.97975001 8.839364598 8.648116919 8.770479649 9.269849614 8.841124089 8.989705646 8.694020868 8.933683745 16126813 pimF Organic Remediation Aromatics Aromatic carboxylic acid Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 7.686064636 8.051992724 7.624081724 7.138084403 7.669274056 7.535751237 7.48923577 7.708595552 8.116946908 94986176 grpE Stress Heat shock Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 8.927055727 8.881951065 8.626291347 8.328472546 9.00965187 8.547508168 8.276762522 8.580140168 8.462469656 9.058426335 8.599413117 119899965 nagL Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. BH72 8.528047954 8.69459651 8.684684774 7.998297104 8.038237148 8.102956337 8.223886846 7.830415245 8.256800783 8.022821627 8.214835771 8.282776742 158450667 endoglucanase Carbon cycling Carbon degradation Cellulose Coprococcus eutactus ATCC 27759 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Coprococcus;species:Coprococcus eutactus; 9.587946418 9.290472584 9.449166213 8.895634321 8.943035258 8.924516743 8.731402754 8.665038049 8.861940831 8.905509769 9.043572758 9.089545682 118503956 pstB Stress Phosphate limitation Pelobacter propionicus DSM 2379 8.110594035 8.152363486 8.152729081 7.781834162 7.676757641 7.622462322 7.362923978 7.727228662 7.604442059 7.720250953 7.612436506 7.548308695 52207938 cumA Organic Remediation Aromatics Other aromatics Sphingomonas sp. CHY-1 9.569443184 9.306817765 9.203911859 8.909182117 8.781811152 9.361374734 8.551043396 8.733515221 9.051495751 8.536737808 9.043754371 9.598364951 218224637 ara Carbon cycling Carbon degradation Hemicellulose Parabacteroides johnsonii DSM 18315 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides johnsonii; 8.493574427 8.067906556 7.805327818 7.658328695 8.186183889 7.959619162 7.641388629 8.001310258 254385532 phoB Stress Phosphate limitation Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.306419115 8.406352425 7.789204202 8.336324448 8.41035853 8.377505724 8.211707847 8.358389801 7.884165777 8.133119815 8.028311216 121720022 Catechol Organic Remediation Aromatics Other aromatics Aspergillus clavatus NRRL 1 9.147001241 9.438604236 9.756270565 7.824228787 8.550121421 8.837845313 196245698 CopA Metal Resistance Copper Cyanothece sp. PCC 8802 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.150320678 7.990646662 8.394463821 7.334710568 7.136034318 7.271413351 6.92614658 7.624463213 60492256 catB Organic Remediation Aromatics BTEX and related aromatics Bacteroides fragilis NCTC 9343 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 8.310902894 8.026389199 8.064827883 7.294233321 7.176236833 7.227346735 7.266163743 7.105928243 7.367139972 19909743 gyrB other category gyrB bacterium MBIC3367 superkingdom:Bacteria; 8.322950913 7.935466428 7.878597978 7.999599999 7.969104285 8.005099488 8.089691634 7.890470222 8.268239896 8.42167153 8.279155946 95110646 mauAB Organic Remediation Herbicides related compound Pseudomonas superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae; 9.235470183 9.126533837 9.331615913 9.038484741 9.33507137 9.53798127 9.124507569 9.327782119 9.262502824 8.986600449 9.308982681 8.958162554 21886618 cumA Organic Remediation Aromatics Other aromatics Thauera sp. DNT-1 8.678019951 8.934374238 8.397229996 8.089243654 8.064698332 7.863411926 8.058458592 7.940498567 8.629119739 8.397590109 8.061682554 8.162371093 220923304 glnA Stress Nitrogen limitation Methylobacterium nodulans ORS 2060 9.137976862 9.046432243 9.327530138 8.553450558 8.410704664 8.457353989 8.114038892 8.276668169 8.584995472 8.468804759 8.412902389 8.609155224 254404798 ureC Nitrogen Ammonification Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 9.159432004 8.884776079 8.819477157 8.359102727 8.471241327 8.412608937 9.130508704 8.766955482 9.218375887 8.346858224 8.306924994 8.177514642 88863099 ppx Phosphorus Phosphorus utilization Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 9.393919908 9.436496653 9.765150838 8.768029659 8.400665574 8.813602027 8.867829363 8.660122502 8.68477163 8.587579657 8.496694437 8.925543704 254500548 ahpC Stress Oxygen stress Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 7.067447971 7.448555394 6.990703461 7.034075336 90419436 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 9.302283678 9.223275858 9.255093426 8.624821263 8.588037139 8.679917645 8.823808565 8.503177719 8.84711 8.83150031 8.864615673 8.743281957 699190 sigma_70 Stress Sigma factors Mycobacterium leprae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.975347587 7.965978833 8.623899336 8.350298233 8.347474174 8.103015728 8.24875188 8.695312699 8.487985648 8.571829854 8.264541215 8.677206299 119226112 pheA Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 11.00875712 10.80393266 11.07520596 10.2992941 10.71184252 10.82280736 10.53677716 10.6205641 10.90679774 10.58056383 11.11330203 10.72958118 94497876 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.569972657 8.315641298 8.575058083 8.346068768 8.091673166 7.887450495 7.858721272 8.245174059 8.284769511 8.151411752 8.234696722 72163510 nifH Nitrogen Nitrogen fixation Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 8.563420301 8.56118805 8.942493624 8.766577195 9.113610609 8.16672854 8.884028352 8.659132065 8.908121632 8.535171183 8978307 bphC Organic Remediation Aromatics Polycyclic aromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 9.18166415 9.169610154 8.568872797 8.584128943 8.778359774 8.959999592 9.10677592 8.906737927 8.498286982 8.762902007 9.106197907 8.372530333 171913435 sigma_24 Stress Sigma factors Verrucomicrobium spinosum DSM 4136 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Verrucomicrobium;species:Verrucomicrobium spinosum; 8.635099273 8.782851646 8.936220908 8.151764855 7.859051103 7.686261293 7.820411337 7.366792415 8.185489749 8.039125257 7.56031111 8.136415891 198281886 phenol_oxidase Carbon cycling Carbon degradation Lignin Pleurotus ostreatus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pleurotaceae;genus:Pleurotus; 8.586293412 8.426358611 8.511023031 8.229355272 8.115451744 8.058407725 7.678001188 7.864740762 8.217090516 7.768466185 7.650567549 7.985102469 247542444 nplT Carbon cycling Carbon degradation Starch Paenibacillus sp. JDR-2 8.32855388 8.242680039 8.145181342 7.940233468 7.677182446 7.779721423 7.472654288 8.161681179 7.539339657 7.7104909 218519078 gyrB other category gyrB Acidithiobacillus ferrooxidans ATCC 23270 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 9.685215971 9.577659834 9.576652235 9.411862893 8.978754411 197210155 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.344417045 8.350365851 8.438147836 8.331407783 8.093996486 8.470488058 8.213416881 8.161549801 8.101949309 7.940839019 8.04073851 139003062 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 9.295726458 9.164753052 9.328978182 8.658429974 8.514426113 8.335031083 8.367885041 8.531367656 8.491801018 8.571105375 8.62711007 8.907527858 145596104 xylA Carbon cycling Carbon degradation Hemicellulose Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 8.710608549 8.475489926 8.443307184 8.118735246 8.34188076 8.079175282 8.030546153 8.247706151 8.139311398 8.057397719 8.330853566 267984668 amyA Carbon cycling Carbon degradation Starch Edwardsiella tarda EIB202 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella tarda; 8.640076207 8.748261877 8.482122237 8.228179589 7.944195694 8.628618123 8.856288687 8.483439141 8.910890013 8.466039801 8.623717084 8.025642512 72160471 pimF Organic Remediation Aromatics Aromatic carboxylic acid Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 9.463490807 9.660478602 9.546643908 8.885261899 9.143835814 9.04134278 9.306870663 9.696692911 9.509576037 9.614445888 9.354496766 9.336217162 34483279 fnr Stress Oxygen stress Wolinella succinogenes 8.529967442 8.367525534 8.613584684 7.606459913 7.646280767 7.652082395 7.825625599 8.02745226 8.03549524 8.127042323 7.882410005 7.994926422 89207709 pcc Carbon cycling Carbon fixation Bacillus weihenstephanensis KBAB4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus weihenstephanensis; 9.387859229 8.982209836 8.73120851 8.766518217 8.705473777 8.635749937 8.708661967 8.524700266 8.48823596 8.689134742 8.720359419 8.542520987 169848689 phenol_oxidase Carbon cycling Carbon degradation Lignin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 9.1053419 9.146308765 9.149999442 8.791751847 8.863982029 8.675761815 8.991373602 9.244140524 8.92732553 9.280557003 9.198475396 9.16919333 89053930 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 9.527132396 9.71461909 9.527067113 9.958498671 10.05300374 10.00779636 9.836717263 10.21705429 9.755657562 10.1260348 10.17228419 10.13506608 67526117 amyA Carbon cycling Carbon degradation Starch Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 8.522102288 8.644875019 8.52284741 7.448517453 7.576917466 7.601688767 7.523420343 7.159551539 7.963040994 7.710379102 7.561139268 8.004537188 260655296 grpE Stress Heat shock Jonquetella anthropi E3_33 E1 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Jonquetella;species:Jonquetella anthropi; 8.870147067 8.864688089 9.295399987 8.355930361 8.064628408 8.387664953 8.146265748 7.867102141 8.130353447 8.377108002 8.311552332 8.539555224 33320481 dsrB Sulphur sulfite reductase sulfate-reducing bacterium oXyS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 8.698365794 8.438361608 8.869478734 8.307790882 8.140376857 8.372868972 8.240380391 7.992669456 8.403202507 8.221263612 8.106452528 8.489204055 256824561 pstA Stress Phosphate limitation Kytococcus sedentarius DSM 20547 9.163204958 9.164763661 9.054369042 8.719364404 9.32897899 9.391594866 9.196590831 9.636591357 9.345349706 9.221295706 9.185836889 89892751 gyrB other category gyrB Desulfitobacterium hafniense Y51 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 9.286660045 9.290852919 9.548086758 8.601589359 8.329533707 8.446400834 8.397258074 8.307976659 8.35068358 8.58661754 8.517660589 8.858263258 229750937 mannanase Carbon cycling Carbon degradation Hemicellulose Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 9.30310437 9.139563479 9.076194492 8.459840909 8.649325987 8.623472133 8.751225322 8.453406066 8.808527815 8.598849309 8.74590164 8.741349515 167349063 linB Organic Remediation Pesticides related compound Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.824636261 8.777543328 8.678480262 8.736034357 8.701140744 8.391029092 9.091942755 8.801151126 8.659205634 8.901986214 8.998322963 8.526496942 213689234 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium 8.496880644 8.157769211 8.428354131 7.844006649 7.793880787 7.748945022 7.481042876 7.434746593 7.700901972 7.467873895 7.62354669 7.798605 124268543 pcc Carbon cycling Carbon fixation Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 8.546741748 8.662528736 8.615096803 8.341287876 8.391174348 8.512956512 8.550514212 8.290133112 8.748754561 8.676966099 8.841065855 8.570050203 222423901 pcpC Organic Remediation Herbicides related compound Arabidopsis thaliana superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Streptophyta;order:Brassicales;family:Brassicaceae;genus:Arabidopsis; 8.166114015 8.336749075 7.152931885 7.274296219 6.920528476 7.652926703 7.109462053 7.27192039 109455921 glnA Stress Nitrogen limitation Roseobacter denitrificans OCh 114 8.07260396 8.666068953 8.220679191 8.146259837 8.102931491 8.220531592 8.421282467 8.695505772 8.758899947 8.855474187 8.551718909 88703322 tfdA Organic Remediation Aromatics Chlorinated aromatics gamma proteobacterium KT 71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 8.257628587 8.064570302 7.741232212 7.717426433 7.705953462 7.504044238 7.475415042 8.148132262 7.424292153 7.341720993 7.628747547 126707786 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 8.725220156 8.706243881 8.683731923 8.727799148 8.663163494 8.161833773 8.410338775 9.019982842 8.626802842 8.528557701 8.706917832 119957799 TehB Metal Resistance Tellurium Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.573591091 8.07445502 7.865694437 7.82412976 8.118662109 8.319746016 8.09536405 8.37645979 7.916409418 7.905949693 8.028245562 256823990 SMR_antibiotics Antibiotic resistance transporter Kytococcus sedentarius DSM 20547 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermacoccaceae;genus:Kytococcus;species:Kytococcus sedentarius; 8.9091571 8.795535156 8.793859937 8.131555218 8.064106251 7.892746512 8.157211125 8.278935526 8.590027805 8.679047754 8.444104402 8.456303383 77975355 SMR_antibiotics Antibiotic resistance transporter Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 8.562469949 8.106973838 8.390464044 7.964705034 7.881763492 7.633678011 7.580024884 7.735071064 7.663265728 7.57697329 8.03807831 251844068 sigma_24 Stress Sigma factors Paenibacillus sp. oral taxon 786 str. D14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 9.904945501 9.770869884 9.974315318 9.116725396 9.066057229 9.018356173 9.237877366 9.079352719 9.13042733 8.954557135 9.080806196 9.310962029 218532434 chnB Organic Remediation Other Hydrocarbons Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 9.284287065 9.39223588 9.111788226 9.050097692 8.917624499 8.867399622 9.024026934 9.181543547 9.212926992 9.156284947 9.030096725 9.040506519 86574230 phn Organic Remediation Herbicides related compound Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.378283381 9.288696767 9.342686985 9.430688732 8.831127345 8.677948525 8.912959913 8.969250836 8.981664058 8.82912558 9.015499431 8.955357306 116634791 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.946933534 8.258058158 8.037823431 8.092790429 8.384574215 8.058017728 8.018349949 8.281857446 8.016828452 8.037888333 8.236419786 94471295 narG Nitrogen Denitrification uncultured bacterium 8.321770835 8.15622908 8.311655575 8.368831478 8.197468321 8.014357871 8.443552534 8.520018018 8.447779284 8.440574159 8.626657211 109898541 trzN Organic Remediation Herbicides related compound Pseudoalteromonas atlantica T6c 8.761355018 8.534689068 8.693544833 8.787777865 8.858323958 8.644551343 8.278871282 8.651929676 8.51910581 8.448570064 8.621119117 94992112 gyrB other category gyrB Streptococcus pyogenes MGAS2096 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus pyogenes; 8.277160367 8.42632902 8.711338647 8.787472756 8.658305569 8.678292499 8.560650874 9.228090399 8.37956447 9.159571968 9.149013607 8.789720061 78093560 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.235962483 8.295916964 8.377836943 8.302578758 8.08226271 7.63258458 7.952475746 8.287089058 8.124892028 8.44258085 8.360445333 8.390824995 71908861 proO Organic Remediation Aromatics Other aromatics Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 8.36517472 7.971999129 7.143042847 7.377444151 7.797215817 7.371264475 7.600826019 7.392251781 110635632 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 8.018481059 8.255378403 8.044885909 7.966573545 8.010798618 8.369983464 7.840315995 7.926347826 7.903187915 76562590 tutFDG Organic Remediation Aromatics BTEX and related aromatics Streptococcus agalactiae A909 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus agalactiae; 8.177290137 8.009054753 7.128827693 6.695247524 7.173465944 6.619131233 7.449598333 6.873836901 6.850742991 7.409592855 116249158 nahF Organic Remediation Aromatics Polycyclic aromatics Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.424028466 8.451471315 8.327377942 8.711680742 8.63852638 8.623670736 8.842194158 8.971660847 8.654842298 9.144182907 8.81228054 8.507839883 99083381 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.945366039 7.973676039 7.158238632 6.896873742 7.060927655 6.502528213 6.555350579 7.408050437 6.865458403 7.207797968 261410515 integrase_tyrosine Bacteria phage REPLICATION Aggregatibacter phage S1249 order:Caudovirales;family:Myoviridae; 9.020201416 8.744342072 8.57914289 8.424937564 8.116758188 8.704582093 8.84872178 8.456704741 8.831470727 8.777672308 7.922693856 159037300 gyrB other category gyrB Salinispora arenicola CNS-205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 8.184143505 8.200402405 8.1046164 7.377871831 7.635374571 7.955949677 8.301973705 7.452867421 8.394787717 7.533961476 6.921011235 7.52934278 110334813 CopA Metal Resistance Copper Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 8.783733804 8.801237479 8.71731281 8.270733198 8.549264843 8.853446274 9.365400099 8.506818604 9.316981678 8.644582744 8.669483934 8.563311797 152610 nifH Nitrogen Nitrogen fixation Rhodospirillum rubrum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum; 8.639119163 8.320686966 8.521911857 7.665420331 7.812115504 7.551544678 7.719431533 7.610068015 7.928412662 7.523506669 7.851193386 40747420 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 8.60248261 8.406065545 8.702186552 8.306626758 7.34062824 8.215449172 7.906404147 7.477005321 7.776474921 7.844285764 7.954460574 113726985 pulA Carbon cycling Carbon degradation Starch Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 7.414936664 7.64180761 7.615171072 7.596659201 7.684476342 8.172761178 7.825686606 7.641206967 7.798282895 17429895 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 8.187585568 8.21582924 8.1942832 8.602706394 8.377412307 8.888110986 8.519863122 8.327628359 8.24223014 8.861332274 8.425870488 113902699 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 8.801834451 8.731110751 8.547958439 8.841418512 9.098289276 9.004939196 9.285757252 8.961916471 8.672249707 8.586828722 8.66082434 8.359170589 186471988 tfdA Organic Remediation Aromatics Chlorinated aromatics Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 9.361180386 9.371665574 9.397373949 8.842087362 9.19132689 9.724703771 9.104315313 9.63600897 9.295761158 9.498130177 9.581295332 219921387 mer Metal Resistance Mercury Laminaria digitata superkingdom:Eukaryota;phylum:Phaeophyceae;order:Laminariales;family:Laminariaceae;genus:Laminaria; 9.508640276 9.159305343 9.208585114 9.1079488 8.887781066 9.085401576 9.100992063 8.937313364 9.194252454 9.235919899 9.282756629 1336632 bphB Organic Remediation Aromatics Polycyclic aromatics Comamonas testosteroni 8.240132056 7.88819399 7.506375466 8.059243375 8.09107877 8.237402397 7.959902137 8.055683432 7.713250897 229611257 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.758106438 7.202133836 145218960 sox Sulphur Sulphur oxidation Prosthecochloris vibrioformis DSM 265 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeovibrioides; 10.158776 9.258047471 8.974796762 10.02133356 10.06580329 9.703867593 9.98989765 10.01699414 9.475692554 9.848165571 9.536279403 9.470547499 158426066 glnA Stress Nitrogen limitation Azorhizobium caulinodans ORS 571 7.947196663 7.874521868 7.737869579 7.470437641 7.636263087 7.161373855 7.838463764 7.726908017 7.480148972 7.5923978 7.614926335 157962988 sigma_24 Stress Sigma factors Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 8.535649624 8.553222877 8.755896372 8.232677467 8.31973079 8.018994892 7.998887346 7.984481188 7.95668931 7.963256885 8.378773113 123967463 xylL Organic Remediation Aromatics Aromatic carboxylic acid Sphingobium yanoikuyae superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 8.412720019 8.570884888 8.64607306 8.115606204 8.023610954 7.893277626 8.25260444 7.98718655 8.00666876 8.081477869 7.913319567 221159572 katE Stress Oxygen stress Rhodobacter sphaeroides KD131 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 9.046112954 8.263776472 8.318119467 8.987795222 9.070346435 8.490823633 8.8853226 8.831346693 8.732581084 8.712564346 8.678957362 8.479217512 84517160 fnr Stress Oxygen stress Loktanella vestfoldensis SKA53 7.206473764 7.261556419 7.71115268 7.496644589 7.063289378 7.082736202 7.171860444 34497684 napA Nitrogen Dissimilatory N reduction Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 9.448748011 9.530882034 9.366908141 9.177762738 8.93926896 9.084395374 9.708317844 9.198325076 9.510743674 9.114977067 9.074650969 8.986255582 118069597 Arylest Organic Remediation Aromatics Other aromatics Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 8.388415233 8.287306643 8.509062225 8.197448987 8.487100011 8.61789879 8.233369002 8.467561621 8.446599491 8.453789003 8.973152169 8.35853453 218244248 CopA Metal Resistance Copper Thermus aquaticus Y51MC23 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus aquaticus; 8.35903414 8.398843618 8.516502899 7.863175001 7.948736822 7.831443347 7.503999459 7.785243748 7.960966594 7.769140871 8.029255773 209885954 NiR Nitrogen Assimilatory N reduction Oligotropha carboxidovorans OM5 9.414588523 9.356678596 9.384607383 9.552600545 9.510849796 9.498670075 9.2742608 9.852204331 8.998033699 9.541370385 9.66332949 9.973517897 85078636 tfdA Organic Remediation Aromatics Chlorinated aromatics Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 9.264480786 9.525006583 8.826309567 8.665671305 8.533720062 8.377301224 8.47354548 8.765264419 119951498 atzB Organic Remediation Herbicides related compound Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 9.241507652 9.356100576 9.460150288 9.590207192 9.608279273 9.420118627 9.831708651 9.736766382 9.537455555 9.905613388 9.844099135 9.530151812 163746714 sox Sulphur Sulphur oxidation Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 8.422753661 8.379010805 8.225329011 8.703590329 8.275526704 7.794480171 8.326488384 8.346337555 8.490309342 8.176313283 8.164754572 8.186219559 114542109 catB Organic Remediation Aromatics BTEX and related aromatics Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 9.043322288 9.031148213 9.381456161 9.081390697 9.274336213 8.931863247 9.008219939 9.378962562 8.679679039 9.317942481 9.166919426 9.517184879 149144321 pcc Carbon cycling Carbon fixation Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.795960726 8.977074151 8.784779523 9.134340128 8.181544479 8.099946216 8.827579037 8.772914648 8.974136669 8.585242756 8.599863648 8.360956542 109452468 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.226894798 8.015044435 8.197827032 8.371678445 8.262685805 8.007410763 7.865651124 8.324568772 8.186613765 8.312374261 8.13683111 8.021212759 56809503 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.333594522 7.062653343 7.050630981 6.861189573 7.529589935 7.256795267 6.804295262 6.877434128 199593985 narG Nitrogen Denitrification uncultured bacterium 8.219532061 8.339804252 8.282459661 8.270006958 7.922882519 8.046753939 8.39842622 8.249734406 8.482449345 8.350975411 7.854751447 21110474 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Xanthomonas axonopodis pv. citri str. 306 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas axonopodis; 8.352501994 8.192590303 8.300719223 8.452902827 8.202187497 8.29134302 8.331901762 8.535793113 8.454337239 8.405268468 8.099131972 257837647 pap virulence adhesin Enterococcus faecium Com15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus faecium; 6.483856786 7.475175815 45990 B_lactamase_A Antibiotic resistance Beta-lactamases Rhodobacter capsulatus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 10.09081666 10.0941675 10.60169643 10.42069236 10.38808913 9.961733036 10.0538976 10.52815643 10.18738598 10.3912353 10.29316599 10.54441563 85773417 hydrogenase Energy process Energy process Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 8.632246141 8.793097453 8.754921258 7.942536738 8.134332755 8.241119731 8.385113509 7.601510719 8.116493779 8.220772228 8.171720239 2960348 amyA Carbon cycling Carbon degradation Starch Streptomyces sp. superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.250046117 8.361867242 8.858273274 8.772301483 8.804318539 8.778708082 8.694992449 8.682568229 8.561876351 149947841 CopA Metal Resistance Copper Alkaliphilus metalliredigens QYMF 9.320103641 8.550045969 8.938740586 8.726262482 8.484655059 8.70083491 9.28698339 8.963413131 119377450 sox Sulphur Sulphur oxidation Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.729577658 8.807665725 8.619366228 8.873543814 8.907237228 8.744008435 9.227060439 9.107555583 9.060418376 9.50920025 9.294950247 8.688193257 21674530 ppx Phosphorus Phosphorus utilization Chlorobium tepidum TLS superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 8.281168296 8.236615953 7.954853949 7.790967717 8.452747128 8.437817116 8.390045942 8.323094033 92431303 Catechol Organic Remediation Aromatics Other aromatics Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.891073533 9.034718381 9.112525354 9.059410757 8.800090101 8.766068459 9.283321438 9.154872128 8.835436577 9.279433515 9.476508326 9.171989996 168700884 xylA Carbon cycling Carbon degradation Hemicellulose Gemmata obscuriglobus UQM 2246 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata;species:Gemmata obscuriglobus; 8.458400081 8.040592868 8.249392055 7.822492416 7.629631553 7.73977141 7.566126888 7.768146017 8.20371002 7.70701495 7.762361468 7.65586658 219543845 sigma_70 Stress Sigma factors Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 9.570878413 9.415455385 9.334261288 8.952477065 8.931339048 9.05207262 9.769782763 9.324340542 9.625107635 9.136011777 9.250518229 8.98805061 169793518 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 9.011329367 8.731328921 8.639984723 9.1239077 9.195597604 9.008292626 9.3054626 9.220920935 8.828330858 9.015091422 8.951862997 8.861898176 209872402 hly virulence hemolysin Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 8.627435077 8.573666485 8.120810348 8.001661291 7.84797207 7.802017807 7.749931909 7.942471442 8.421595617 7.901996991 7.699223124 8.037312355 223897797 ctsR Stress Protein stress Streptococcus suis 89/1591 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus suis; 8.57304617 8.651826332 7.878077946 8.464003105 7.965606202 7.251023802 7.038708461 7.781455455 7.99273487 8.133248542 77956923 nplT Carbon cycling Carbon degradation Starch Yersinia bercovieri ATCC 43970 9.04675942 8.566263757 8.394752922 7.727347213 8.423329589 8.288341493 89512434 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.108623914 8.005656459 8.101614691 7.511433985 7.370956396 7.441676414 7.208740421 7.205950967 7.738917939 7.275614289 7.341143286 7.377279033 227270714 B_lactamase_C Antibiotic resistance Beta-lactamases Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 9.832796197 9.74087486 9.822786454 9.241404798 9.231588714 9.049845874 9.137975124 8.917303755 8.969044934 8.92364226 9.174223906 9.305678713 184197445 proO Organic Remediation Aromatics Other aromatics Burkholderia phymatum STM815 8.86410987 9.083050214 9.019431156 8.364541206 8.371414509 8.69003632 8.979561411 8.667906702 9.18075563 8.418821259 8.350930739 8.413329798 94471091 narG Nitrogen Denitrification uncultured bacterium 9.50680175 9.879662684 9.42386858 9.366689482 9.110326623 8.901172797 9.150306286 8.763463357 9.689647466 8.659021793 8.769380307 9.002887556 224521826 cda Carbon cycling Carbon degradation Starch Bacteroides cellulosilyticus DSM 14838 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 7.095676472 7.016361205 7.353853054 6.974186441 8.196799937 52209506 sigma_24 Stress Sigma factors Burkholderia pseudomallei K96243 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 8.245487564 8.224445013 7.428813012 7.448546609 7.423642202 7.134822591 7.031869202 7.366147906 7.655725757 156523583 todC Organic Remediation Aromatics BTEX and related aromatics uncultured bacterium 8.195110117 8.179019303 8.271345468 8.104716287 7.995425748 7.96996207 8.111545 8.258112831 8.264005656 8.170272083 8.011156065 8.003543738 228005439 bphF1 Organic Remediation Aromatics Polycyclic aromatics Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 8.725483039 8.676946265 8.459841241 8.171498006 8.333059616 8.52650127 8.837368435 8.657466543 8.6950878 8.899366152 261835663 iro virulence Halothiobacillus neapolitanus c2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Halothiobacillaceae;genus:Halothiobacillus;species:Halothiobacillus neapolitanus; 9.603777503 9.697238573 9.640146594 9.005083555 8.933177866 8.815749329 8.870191135 8.726928216 8.777076833 9.015071144 8.945800361 9.216549325 283472487 oxyR Stress Oxygen stress Xanthomonas albilineans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas; 8.412136985 8.34185144 7.998884453 7.97481208 7.79855454 8.070334064 8.074971525 8.13101997 8.118391591 7.982461426 7.828163488 169830688 sigma_70 Stress Sigma factors Candidatus Desulforudis audaxviator MP104C superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Candidatus Desulforudis;species:Candidatus Desulforudis audaxviator; 9.356289804 9.444667982 9.567188066 8.876257796 8.808168729 8.614097064 8.422099185 8.974757629 8.547523465 8.834379665 9.116184108 9.005974073 62468082 bco Organic Remediation Aromatics Aromatic carboxylic acid uncultured bacterium superkingdom:Bacteria; 8.670966717 8.882415416 8.597423302 8.790473682 8.833751457 8.613790727 9.010503206 9.094593536 8.758232661 9.091679593 8.960745074 8.800624158 149936337 ara Carbon cycling Carbon degradation Hemicellulose Parabacteroides distasonis ATCC 8503 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides distasonis; 8.975896215 8.65396774 8.538070374 7.975742274 7.829020511 7.838172905 7.805479633 7.531475231 7.839171268 7.44377792 8.068575703 39934633 nitA Organic Remediation Aromatics Other aromatics Rhodopseudomonas palustris CGA009 9.951699196 9.778128184 9.814597237 9.688073592 9.727367933 9.479588521 9.799993845 9.800649584 9.981244755 9.579951746 9.580363672 9.661504362 34392410 bphA Organic Remediation Aromatics Polycyclic aromatics Frateuria sp. ANA-18 8.31027512 8.300013945 8.624247751 8.129459433 8.053708826 7.711462004 7.484014278 7.907752753 8.0031574 7.906840626 7.961764968 8.142865482 51491440 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.056181008 8.788502928 8.697899141 9.209649227 8.853181059 8.695873257 8.943711979 8.760846777 8.771797994 8.701931925 8.788340798 8.544166721 37524830 B_lactamase_C Antibiotic resistance Beta-lactamases Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 9.144647376 9.250150878 8.979062998 9.177097831 9.145616498 9.038608529 9.088947494 9.121603646 8.954060138 9.005180787 8.92753344 8.658645815 161166034 pulA Carbon cycling Carbon degradation Starch Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 9.347913318 9.179250655 8.877214922 9.308428199 9.092088077 9.09879433 9.594693198 9.475653236 9.05332001 9.454621506 9.322955147 9.440057771 197210239 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.314022851 8.150220317 8.094155745 8.241514686 7.821685533 7.718574896 8.055020171 7.988374261 8.085848777 7.771594989 7.680737169 7.763694455 238586988 phenol_oxidase Carbon cycling Carbon degradation Lignin Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 8.298531123 8.262147252 8.150862658 7.599833985 7.375880391 7.857717591 8.043777663 7.292526144 8.322022635 7.425528135 7.505346064 7.794057718 145595484 endochitinase Carbon cycling Carbon degradation Chitin Salinispora tropica CNB-440 8.516484599 8.326819511 8.764765182 8.275357607 7.938415062 8.062844806 8.41473865 7.966502373 8.492411023 8.21314839 8.127109557 8.117907817 192360166 mannanase Carbon cycling Carbon degradation Hemicellulose Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 8.340015364 8.541487926 8.506397301 7.40903313 7.552644585 7.858305453 8.107840749 7.56499796 7.515738524 7.687305518 7.777251568 86156836 pimF Organic Remediation Aromatics Aromatic carboxylic acid Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 8.788103126 8.484766419 8.451463036 7.647971949 7.848454371 7.854769045 8.543876525 7.917025706 8.32906924 8.078736737 8.141092837 7.976132093 222877705 SMR_antibiotics Antibiotic resistance transporter Campylobacter rectus RM3267 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter rectus; 9.110810132 8.975430462 9.189907397 8.663962655 8.269216023 8.4923045 8.498533463 8.290991319 8.736838586 8.462457061 8.51627837 8.527871288 87301849 hrcA Stress Heat shock Synechococcus sp. WH 5701 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 9.113775513 8.866609861 8.986272545 9.002621065 8.830514666 8.716891754 9.005031435 9.202353212 9.065289566 9.016289927 8.878692554 9.068726764 82791417 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 8.778245184 8.287009011 8.723023219 8.166817641 7.990186656 7.825262441 7.841749792 8.193003267 8.222234341 8.1606674 7.933689471 8.285390718 78518980 CODH Carbon cycling Carbon fixation Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.219170472 8.236061043 8.479881237 8.571629892 7.981105463 8.039631777 8.043702264 8.352958083 8.240599947 8.296093284 8.260576902 8.402528243 151302272 AprA Sulphur adenylylsulfate reductase Desulfospira joergensenii 8.234381806 8.227901237 8.589258943 7.897396884 7.744530193 8.378642449 8.251742802 8.179698062 8.249565756 8.210823623 8.204976212 8.03858381 77359668 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudoalteromonas haloplanktis TAC125 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas haloplanktis; 8.966156839 8.845449378 8.660679916 7.994783811 8.093049206 8.19023002 8.758803092 8.19587331 8.867312804 8.091499728 7.685057785 8.120870036 115390801 exoglucanase Carbon cycling Carbon degradation Cellulose Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 8.346919624 8.471099943 8.204570391 8.079839217 7.828398365 8.042605499 8.340659067 8.154098135 8.515236779 8.194460896 8.065241497 146192095 pcpE Organic Remediation Herbicides related compound Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.865565472 8.434361925 8.503842341 8.221362243 8.139177086 7.976978997 8.38607355 8.090601783 8.631221343 8.142609171 8.433420411 8.253342697 55978124 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium 8.457713206 8.257843597 8.208294983 8.269312703 8.323973863 8.225561313 8.229681849 8.368066262 8.105327476 8.203025181 7.861043625 91978514 AceA Carbon cycling Carbon degradation others Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.520744862 9.423669651 9.387993927 8.954647602 8.823163444 8.545877548 8.561591645 9.076035367 8.674947276 9.055898816 8.79810912 167423775 dmsA Organic Remediation Others Yersinia pestis biovar Mediaevalis str. K1973002 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia pestis; 9.55486178 9.490867647 9.476678421 9.026613223 8.989738857 8.984952813 8.815078926 8.865502873 8.868152351 8.857868681 8.828294138 9.207772869 188532491 obgE Stress Radiation stress Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 8.743929235 8.547667587 8.730588947 7.699099913 7.744036664 7.764368921 7.652046125 7.519145149 7.715571575 7.513162658 7.964752221 7636018 ppk Phosphorus Phosphorus utilization Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.126905603 8.211681769 7.928126603 7.939402301 7.625086244 7.721218679 7.895682455 7.970216313 7.829477784 7.626365393 7.601385409 126355305 phdCI Organic Remediation Aromatics Polycyclic aromatics Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.175102684 8.330132419 8.071471442 7.965205688 8.01611339 7.799480331 7.932203068 8.086454891 8.296763483 7.97284819 7.873986467 7.842736312 253986290 grpE Stress Heat shock Methylovorus sp. SIP3-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylovorus; 8.680762363 8.968738169 8.710767808 8.328248391 7.786459842 8.669335152 8.939192065 8.322626147 8.77451107 8.234833996 8.359945445 8.255287249 74038434 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.631849275 9.347973134 9.214754194 9.185118075 9.362179474 9.004547269 8.549897338 9.311677181 8.739409451 9.090055793 9.148267105 219678539 pheA Organic Remediation Aromatics Other aromatics gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.008732147 8.15290346 8.141573932 8.135837728 8.180367459 7.875493079 8.119661434 8.237718333 7.987458614 8.427985311 8.256774393 8.033959962 111152179 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 9.272615155 9.12586334 8.691652484 8.706157324 8.52653033 8.84518722 9.134738584 9.185826026 9.399773866 9.1111789 9.064709753 73670092 dsrB Sulphur sulfite reductase Methanosarcina barkeri str. Fusaro 8.326912585 8.116472373 7.584973004 7.184256359 7.391723966 7.194837163 6.929334591 7.081676704 7.325411174 7.681055627 52784429 GroES Stress Heat shock Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 8.318164511 8.356113227 8.304711983 7.704738214 7.83485507 7.716948086 7.446885157 7.907603589 7.721859519 7.904834026 227990289 glucoamylase Carbon cycling Carbon degradation Starch Meiothermus silvanus DSM 9946 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 8.949922478 8.838050107 9.175528917 8.35169604 8.177340816 8.217904164 8.339523313 8.076804163 8.541043145 8.108260328 7.918794011 8.202581927 116611710 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8.652814674 8.654062001 8.52487147 8.333037192 8.350829143 8.383195271 8.235930162 8.461994358 8.336819803 8.787404261 8.658680514 8.329329864 71042856 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 8.259653167 8.179436133 7.329849034 7.620678154 8.136450195 7.445807337 8.487908474 7.694898305 7.636660029 7.789124421 70728351 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.289282178 8.152655415 8.064935421 8.138265685 8.266624073 7.622451792 8.28743835 8.119784957 7.858230104 8.112344357 7.771638084 270492187 iro virulence Acidovorax avenae subsp. avenae ATCC 19860 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax avenae; 8.937653481 9.204566587 8.905624236 9.367271333 9.355544564 9.069844 9.392868741 9.361187845 9.010219282 9.449246695 9.066563206 8.85147866 148658117 fnr Stress Oxygen stress Roseiflexus sp. RS-1 8.571955436 8.384789208 8.308672838 8.169470551 8.074903709 8.029667433 8.056109154 7.89303231 8.321054279 7.535806978 7.889630106 7.903957387 110647328 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Alcanivorax borkumensis SK2 8.982740049 8.567909282 9.071859764 8.263165789 8.412135631 8.075447282 7.910451201 8.020298521 8.189442068 8.050939225 7.852533999 8.386753734 126664628 phoB Stress Phosphate limitation Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 8.190435809 8.155433883 8.323911035 8.266813764 8.133051521 8.068571533 7.911759079 8.308314749 8.168640843 8.047825824 8.008612247 163261327 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 8.863149475 8.714442724 8.705513096 9.015688916 9.026592971 9.023558742 8.397176617 9.092054942 8.364484055 8.900788628 9.104753415 8.595906055 225096466 ahpC Stress Oxygen stress Clostridium sp. M62/1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 9.246728809 9.11437393 9.25851506 8.727081273 8.626247408 8.576968567 8.502797202 8.610638965 8.354359701 8.454542766 8.321217111 8.636738522 261197303 AceA Carbon cycling Carbon degradation others Ajellomyces dermatitidis SLH14081 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 8.329192495 8.442374477 8.335771673 8.18666257 8.034830766 8.279856589 8.05523682 8.708210259 8.547961725 120609414 SMR_antibiotics Antibiotic resistance transporter Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 8.255876814 8.317367241 8.428948983 7.822844578 8.032616788 7.852348724 7.578100408 7.899907819 8.129134256 7.976592782 7.782359194 7.852409092 255010349 pstB Stress Phosphate limitation Bacteroides fragilis 3_1_12 8.741641973 8.424892496 8.61691278 8.131945773 8.032779427 7.940339944 7.743367137 7.656954283 8.038203204 7.664781359 7.686983993 8.216858991 159177285 chnB Organic Remediation Other Hydrocarbons alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 8.901068266 9.04230442 8.702015144 8.876776587 8.866399579 9.070064586 9.423636351 8.921423423 8.800429668 8.775749944 8.65094704 8.580721469 217506114 sigma_70 Stress Sigma factors Thauera sp. MZ1T superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 8.442668524 8.601715653 8.152084175 8.008101123 7.481831044 7.914604035 8.078417011 8.27394713 7.926009726 7.766721225 7.93761954 179346861 sox Sulphur Sulphur oxidation Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 8.370884906 8.06577011 7.673615099 7.333233256 7.45710317 7.576787612 7.141565296 8.089812662 7.07298835 7.046326309 209401786 narG Nitrogen Denitrification uncultured bacterium 9.16370695 9.149083639 9.373208488 9.01543088 9.039727269 9.053437577 8.946763308 8.976792718 8.787771576 8.904302645 8.823743293 8.718442828 171193515 CopA Metal Resistance Copper Polynucleobacter necessarius subsp. necessarius STIR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 7.963880143 7.723647602 7.251145396 7.243181594 7.380121606 209538992 tfdA Organic Remediation Aromatics Chlorinated aromatics Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.861477736 8.657450271 8.260820835 8.830910302 8.789079448 8.722991729 8.616833494 9.061365835 8.667781868 8.764687757 8.808351515 8.664646179 197103361 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 8.340938704 8.38118066 8.307829029 8.104080867 8.126926199 8.016915311 7.658043003 8.249430738 8.161465818 8.16211631 8.329106796 8.448819128 84622002 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Xanthomonas oryzae pv. oryzae MAFF 311018 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 8.929975701 9.044009457 9.277472827 8.941970474 9.050957127 8.876637859 9.183618934 9.338944151 9.183352538 9.290398761 8.991592424 9.268134086 169759514 SMR_antibiotics Antibiotic resistance transporter Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.127954872 8.07972073 7.875674707 7.867420405 7.923909913 8.272030922 8.296177469 8.078192311 8.116066814 8.213466367 7.484671191 226314182 cydB Stress Oxygen limitation Brevibacillus brevis NBRC 100599 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus brevis; 8.424825467 8.083033856 8.530919217 7.946599585 8.014179867 7.579502166 7.750439449 7.566802131 7.463801621 163794836 pcaG Organic Remediation Aromatics Other aromatics alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 8.34077857 8.327187238 8.634468239 7.750384551 7.886892673 8.127782204 8.654036862 7.878068206 7.978046261 7.991685352 8.129025906 258536091 B_lactamase_C Antibiotic resistance Beta-lactamases Pantoea sp. At-9b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 8.876561508 9.154228099 8.824786035 8.526784376 8.586464579 8.726158868 9.073937609 8.5664497 9.293322458 8.420342415 8.392998187 8.452043852 187927792 tfdA Organic Remediation Aromatics Chlorinated aromatics Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.161639926 8.64583793 8.96346235 8.645963222 9.149996604 8.958077088 9.047030111 8.690383823 9.031031435 163737633 bclA Organic Remediation Aromatics Aromatic carboxylic acid Phaeobacter gallaeciensis BS107 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 10.21543448 10.33675279 10.21857487 9.738922804 9.782116734 9.557900044 9.692787832 9.934735059 9.758927417 9.889476401 9.827831083 9.959653219 213536703 exoglucanase Carbon cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 8.03697516 8.38400079 7.899349902 8.193122466 7.995987796 7.491947806 7.880309926 7.787245 7.798511172 7.674094369 7.944845307 229589759 cytochrome Energy process Energy process Pseudomonas fluorescens SBW25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.487123861 8.681213238 8.216743178 7.637445501 7.532771026 8.2828353 8.708539664 7.782492273 8.124853116 7.96056755 8.260798353 7.849770415 108804048 narJ Stress Oxygen limitation Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 8.82613885 8.760017131 8.969347703 7.920496838 8.256758345 8.188706568 8.06985957 7.480728912 8.301286986 8.245878113 8.088371111 8.234673365 70984567 AceA Carbon cycling Carbon degradation others Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 9.194243771 9.041345252 8.267768942 8.406436067 8.615892622 8.123920652 8.819171519 8.201151999 8.278881908 8.590188784 194348928 atzC Organic Remediation Herbicides related compound Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 8.70050435 8.714525943 8.317616005 8.044727669 7.989221943 8.300209968 8.28038528 8.134705897 8.235586129 8.21476509 8.272908943 8.469053103 224368877 hly virulence hemolysin Desulfobacterium autotrophicum HRM2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium;species:Desulfobacterium autotrophicum; 8.566348608 8.619148415 8.66950282 8.087985457 7.893347304 7.911198756 7.777427424 7.434808536 8.259028206 7.960309746 7.592829736 7.963151821 121593769 CopA Metal Resistance Copper Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 8.409027506 8.410149713 8.168058191 8.194701486 8.22451111 8.212907026 8.54006064 8.641968881 8.44677497 8.432589761 85111735 phenol_oxidase Carbon cycling Carbon degradation Lignin Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 8.926730761 8.764263963 8.717812418 8.444025331 8.73806588 7.913281405 8.696563808 8.923501085 8.245801728 114228552 AceB Carbon cycling Carbon degradation others Paracoccidioides brasiliensis superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides; 9.885106974 10.12242807 9.92056904 10.18429264 10.1052777 9.947701226 10.22690915 10.1235409 9.835322414 10.1636563 9.995197202 9.889839888 146272674 dsrB Sulphur sulfite reductase Pelotomaculum thermopropionicum SI superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Pelotomaculum;species:Pelotomaculum thermopropionicum; 7.819455281 7.720418074 7.973986418 8.018274168 7.91640503 7.863801115 7.842107041 7.822273242 154250806 CopA Metal Resistance Copper Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 8.690901116 8.343693562 8.687419573 8.127582579 8.182557735 8.430470942 8.967119799 7.982566163 8.643915193 8.363774027 8.302954588 8.486218562 223586061 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.406668807 9.187241098 9.379876819 9.356152629 9.246489806 9.039816158 8.953805064 9.298299618 9.241732364 9.400530697 9.350411837 9.434430068 253701711 cytochrome Energy process Energy process Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 9.545926812 9.731498073 9.38798012 8.578132394 9.197758527 9.486091984 9.98158754 8.865148569 9.708484185 9.055235031 8.863659324 9.033311602 260576118 hrcA Stress Heat shock Rhodobacter sp. SW2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 10.07583406 10.03879545 9.768359503 9.37520998 9.926224869 10.05579383 10.49501672 10.25963342 9.807625416 9.759044105 10.25805144 9.809494939 111021875 atzA Organic Remediation Herbicides related compound Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.230003681 8.194887204 8.072771703 7.671098803 8.482505346 8.524288725 8.277072409 8.383391616 8.424296034 8.246776504 8.560556296 219721944 atzC Organic Remediation Herbicides related compound Stenotrophomonas sp. SKA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 9.284708606 9.355209552 9.385293238 8.214225571 8.474295397 8.4815318 9.106594611 8.216782633 8.841686389 8.513884529 8.511845068 8.630272796 99082430 pstB Stress Phosphate limitation Silicibacter sp. TM1040 8.37830599 8.445493398 8.909738602 8.194829958 8.243936306 7.87798135 8.187245835 8.701994768 8.640739497 8.746577034 8.653293955 8.661444743 126105748 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacter sphaeroides ATCC 17029 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 9.158261987 9.241333685 9.247042595 9.033405614 8.820836018 8.545472547 8.902292672 8.935634647 9.056274513 8.858906286 8.628030719 8.806406096 145017007 phenol_oxidase Carbon cycling Carbon degradation Lignin Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 9.686322727 9.73045634 9.764316839 9.135707962 8.670504245 9.062952423 8.951928832 8.602517063 8.815732088 8.692279919 8.710118494 9.05460099 212224947 nplT Carbon cycling Carbon degradation Starch Thermococcus onnurineus NA1 8.806740444 8.824621692 8.760188583 8.339699479 8.259579322 7.930885327 7.714395515 8.106805436 8.40000579 7.836903733 7.809383272 8.509703901 12539415 catB Organic Remediation Aromatics BTEX and related aromatics Burkholderia sp. NK8 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.035922074 8.18212123 8.149478248 7.963791187 8.244756714 8.374281812 8.272394162 8.46023626 8.46445407 27375413 sigma_32 Stress Sigma factors Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 9.293647365 8.953620608 9.2918972 8.807071142 9.039458205 8.759874534 8.868087535 8.874448467 8.548288708 8.90576427 8.971653113 9.148796253 12667630 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium UMTRAdsr610-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 8.382036626 8.206394546 8.186692195 8.088253621 7.955550767 7.510233341 7.963556575 8.103546171 7.793148246 8.001110235 8.126093625 83648581 obgE Stress Radiation stress Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 8.318492025 8.435506324 8.430938316 8.51349649 8.656091256 8.245330772 8.139097668 8.850405678 8.436534005 8.650233071 8.395009296 8.596903142 6066626 linC Organic Remediation Pesticides related compound Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.019414857 8.306445848 7.707973716 7.881089557 8.189943693 8.004584055 8.166142415 7.949395521 7.919416453 192764460 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.612947469 8.540650063 8.510499993 7.867714511 8.069151059 8.329910566 8.723139697 7.733779132 8.958342743 7.999984291 7.811478913 8.028988457 158331531 oxyR Stress Oxygen stress Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 9.168615602 9.463326578 9.450279804 8.645781888 8.66296968 8.881382798 9.182050178 8.740209327 9.079078879 8.746112784 8.630477673 9.024203176 23978251 gyrB other category gyrB Chlorogloeopsis sp. PCC 6718 superkingdom:Bacteria;phylum:Cyanobacteria;order:Stigonematales;genus:Chlorogloeopsis;species:Chlorogloeopsis fritschii; 6.898934355 6.824825431 256580790 amyA Carbon cycling Carbon degradation Starch Capnocytophaga ochracea DSM 7271 8.497935634 8.309506122 8.551947097 8.565351115 8.131046964 8.231186015 8.198990664 8.554338321 8.721950886 255297135 pstA Stress Phosphate limitation Corynebacterium tuberculostearicum SK141 8.062179909 7.920289642 7.538971028 7.576232663 7.885474013 7.798051674 7.603676059 8.428966383 7.477326338 7.19091925 7.439626443 260851024 sigma_24 Stress Sigma factors Prevotella tannerae ATCC 51259 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella tannerae; 8.84848992 8.787276192 8.4339194 8.411211686 8.509162719 8.25944344 83311689 linC Organic Remediation Pesticides related compound Magnetospirillum magneticum AMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 9.070158085 8.943344633 8.950982755 8.56931203 8.788302391 8.763439545 9.018849811 8.585409674 9.102786502 8.892872636 8.890527871 8.723341009 37522440 mer Metal Resistance Mercury Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 9.9293787 10.01613841 10.00045995 9.149303186 9.315613732 9.645626552 9.74632415 9.635469433 9.734624243 9.566198419 9.642462514 9.73778805 167850557 sigma_70 Stress Sigma factors Burkholderia pseudomallei B7210 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 8.984844455 8.700528559 8.851937418 9.007911358 9.03910619 8.835361069 8.757961584 9.14410287 8.774701877 8.976730066 9.096513768 9.081737577 110834653 SMR_antibiotics Antibiotic resistance transporter Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 7.744965999 7.601631677 7.349897322 7.544804607 7.440327783 7.78801495 7.734378048 7.597352587 116620147 sigma_24 Stress Sigma factors Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 8.71932241 8.891541403 8.790306734 8.098480045 8.059543784 8.044490852 8.051372089 8.049794091 8.24935311 8.113733042 7.962350375 8.248744463 29339293 hly virulence hemolysin Bacteroides thetaiotaomicron VPI-5482 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides thetaiotaomicron; 8.45487699 8.58635059 8.477866896 8.190563245 8.095412853 7.911874508 7.872127132 8.060742375 8.073388545 8.085224862 8.188268294 8.276311178 4406091 tfdB Organic Remediation Aromatics Chlorinated aromatics Burkholderia sp. TFD2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.511097348 8.343372034 8.089308135 7.875975388 7.567498054 7.93176935 8.159117228 7.817037432 8.331308581 7.251773891 7.780557231 121715826 endochitinase Carbon cycling Carbon degradation Chitin Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 8.885057896 8.779322839 8.965482431 8.322431101 8.290545016 8.270835033 8.061664494 7.870422799 8.122095539 8.048238756 8.077197383 8.503366453 111611644 pcc Carbon cycling Carbon fixation Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 9.769902418 9.573232547 9.739896136 9.205220946 9.154954185 8.929023352 9.379622612 8.922714001 9.385190362 9.195010708 9.279847646 9.427566673 70988593 katE Stress Oxygen stress Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 8.448190928 8.454629574 7.610075324 7.772888353 7.846446863 7.468152885 7.504944176 7.908330794 7.821344267 7.808034236 8.166759451 269923210 amyA Carbon cycling Carbon degradation Starch Brevundimonas subvibrioides ATCC 15264 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas;species:Brevundimonas subvibrioides; 8.962218187 8.49002893 8.560668486 9.116480058 8.872292034 8.584909592 8.64462371 9.095980279 8.731494695 9.328689401 9.461963691 8.817826698 50950413 gyrB other category gyrB Leifsonia xyli subsp. xyli str. CTCB07 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Leifsonia;species:Leifsonia xyli; 9.660605076 9.413177939 9.542980345 9.304353034 8.949630641 8.82181717 9.171889528 9.288325495 9.076426238 9.408082333 9.613647217 8.888181373 266626877 hrcA Stress Heat shock Caulobacter segnis ATCC 21756 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 8.407566088 8.354755007 8.397834383 8.464921821 8.371090448 8.130408441 8.570733762 8.460748796 8.374488879 8.424706471 8.222025555 8.278209377 189202830 BpH Organic Remediation Aromatics Aromatic carboxylic acid Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 8.49012985 8.331207195 8.485746787 8.304080848 8.081467684 8.008289232 8.376344063 8.021985201 8.603891603 8.067386759 8.013384858 8.11952359 88856092 hly virulence hemolysin marine actinobacterium PHSC20C1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 8.150377653 8.397077563 8.348604555 8.479837966 8.256354227 8.307366276 8.380827417 8.711757593 8.458127471 8.642318684 8.1519185 8.30799657 84043023 Catechol Organic Remediation Aromatics Other aromatics uncultured bacterium 8.876682782 8.922772187 8.913047943 8.765910999 8.92865095 8.71133537 8.743507598 8.768507283 8.616601004 8.936966629 8.861974054 8.506807427 116609970 nmoA Organic Remediation Aromatics Nitoaromatics Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8.951628397 8.932069942 9.026108538 8.615825567 8.468027283 8.454926532 8.426305319 8.429075152 8.495160254 8.71268766 8.524437644 62086241 dehH109 Organic Remediation Chlorinated solvents Burkholderia sp. WS superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.059463222 7.988356151 7.19677512 7.399505641 7.016813526 7.48599203 7.587534529 7.37416084 7.41606948 7.368230522 218751118 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.624535707 7.326790631 7.272702262 7.40597173 6.792166509 7.396745812 91798001 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 9.675675733 9.701033986 8.709077627 8.614491709 8.764569979 8.708635865 8.601841198 8.77594329 8.486847186 8.710997004 8.662431496 108805480 ChrA Metal Resistance Chromium Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 9.333274606 9.153151956 9.170214751 9.100701349 8.911773673 8.793352391 8.681268744 8.928177506 8.826815146 9.006864892 9.148761678 168196069 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Methylobacterium sp. 4-46 9.030125933 8.947760315 9.192837368 8.989934481 9.034413445 8.803933155 8.818657965 9.233366357 8.992961397 8.991507509 8.882968188 9.084207484 89950900 xylanase Carbon cycling Carbon degradation Hemicellulose Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 8.60401119 8.575854351 8.599203254 7.95549909 7.797756191 7.840529679 7.67432411 7.128989208 7.614745287 7.715961339 8.004381497 170142016 tfdA Organic Remediation Aromatics Chlorinated aromatics Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 10.11431932 10.16248949 10.02534706 10.29889782 10.36846717 9.809380529 10.3042975 10.27248676 10.01418195 10.31158426 10.16653346 10.13917255 84788721 fnr Stress Oxygen stress Erythrobacter litoralis HTCC2594 8.461126199 8.554336735 8.344632385 8.22721825 8.07822754 8.403652811 8.612227329 8.503357718 8.557021408 8.570533974 8.680672779 8.620647692 260774824 sigma_32 Stress Sigma factors Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 8.37075695 8.428472498 8.512234171 7.309987533 7.487182377 8.232637886 8.39893456 8.011861004 7.949369936 7.730905481 8.026583423 8.161262442 119716951 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 9.148447033 9.228179442 9.234704619 8.932731874 8.995057743 8.807724606 8.914359563 9.084535707 9.00570636 9.209788127 9.239210425 9.176224094 147744752 nasA Nitrogen Assimilatory N reduction Halomonas sp. '80m A1 isolate-5' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 8.640913758 8.902843313 8.34355346 8.095705157 8.060777338 8.142077005 9.055083522 8.363575384 8.757248076 8.274434499 8.116565348 8.242290607 211958541 gyrB other category gyrB Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 8.238793056 8.101879419 8.390978929 7.562116509 7.564442983 7.483516299 7.389439095 7.573950087 7.891640809 7.697016334 7.703527531 7.833388403 68229378 gyrB other category gyrB Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.238260947 8.354158671 8.135743977 8.214202943 8.149457776 8.095476735 8.498728314 8.018146318 8.493329191 8.518840974 8.643535289 41397073 narI Stress Oxygen limitation Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 8.348360203 8.514315629 8.235832246 8.059969883 7.816091082 8.037803877 8.292430788 8.166172855 8.068771985 8.180956892 8.33160159 170747695 mer Metal Resistance Mercury Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 9.347059736 9.436267581 9.221507119 9.409381213 9.45857569 9.496551176 9.924978744 9.502817881 9.727531023 9.253164202 9.443331101 9.56121112 148836228 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 8.873005475 8.82216929 9.096153751 8.316945207 8.313241023 8.199776248 8.123751955 8.256117245 8.243721082 8.216837281 8.265849631 8.442288112 63256070 pcaG Organic Remediation Aromatics Other aromatics Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 8.408129756 8.322625868 8.319899643 8.305760325 8.846105019 8.464484197 7.839063212 8.60789871 8.25599645 8.393200246 8.507769486 8.660228846 15899349 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sulfolobus solfataricus P2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus;species:Sulfolobus solfataricus; 9.183669078 9.186168766 9.190012631 8.462627983 8.332469187 8.441295449 7.94356622 7.677382537 8.059746667 8.247857858 8.500566101 213964047 gyrB other category gyrB Capnocytophaga sputigena Capno superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga sputigena; 9.304998721 9.507853665 9.580960941 8.811793204 8.530685811 8.857885519 8.65892048 8.383517197 8.772935627 8.545708017 8.543269184 8.848463173 225199056 grpE Stress Heat shock Desulfonatronospira thiodismutans ASO3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfonatronospira;species:Desulfonatronospira thiodismutans; 7.26411627 7.278565404 7.547768483 7.191448994 7.070717908 7.54028214 188583331 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 8.519254047 8.521451956 7.834211983 7.410813084 7.889875755 7.563891003 7.828986909 157804801 AprA Sulphur adenylylsulfate reductase Allochromatium warmingii 8.728619483 8.412725742 8.487209941 7.640028117 7.503489828 7.698486083 7.622297132 7.359315365 8.042302582 7.778765986 7.925101615 254475055 hrcA Stress Heat shock Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8.758784904 8.517596637 8.804840538 7.960205832 7.723568307 7.987316103 7.99337263 7.897858079 8.137689246 7.990357535 7.966546725 8.023837515 108803872 glnA Stress Nitrogen limitation Rubrobacter xylanophilus DSM 9941 9.750220543 9.63702202 9.628143222 9.164403099 9.235366719 8.890207228 9.018000761 9.023284015 8.786911051 8.841847785 8.766665115 9.10699096 54027215 atzB Organic Remediation Herbicides related compound Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 9.544746386 9.146523043 9.173388632 9.107783935 8.872973039 8.959688927 8.955976282 8.742268726 8.96084298 8.944185659 8.409905583 76667412 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.031895528 8.143529396 7.415826024 7.351518267 7.492329282 7.266073119 7.152956626 7.683720887 7.249930874 7.298840634 7.367271382 66474941 cmuA Organic Remediation Chlorinated solvents uncultured bacterium superkingdom:Bacteria; 9.295262382 9.178584807 9.277414969 8.562830591 9.313660837 8.990067509 8.776940223 8.842111589 8.693691546 8.707512484 9.240477619 8.994461893 27351704 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.452622366 8.299644472 8.250695463 8.177750629 7.967090395 7.790123531 8.252898331 8.424843481 8.316562179 8.168432512 8.105480785 150387119 CopA Metal Resistance Copper Victivallis vadensis ATCC BAA-548 8.574881276 8.633602127 8.611781376 8.132407831 8.15292666 8.338002494 8.333059297 8.323811359 8.277653373 8.50838899 8.468072808 8.753850747 37726844 dsrB Sulphur sulfite reductase uncultured prokaryote 8.239220572 8.049778638 8.495202384 8.585333843 8.61537672 8.240662417 8.319934869 8.904740106 8.435443043 8.748114137 8.551813608 8.625933957 2654356 dehH109 Organic Remediation Chlorinated solvents Rhizobium sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 8.540405232 8.310329081 8.272784303 8.083966075 8.098251803 7.999081677 8.118865523 8.584877486 8.581973882 8.337054275 7.990774124 8.296899584 219547450 B_lactamase_C Antibiotic resistance Beta-lactamases Methanosphaerula palustris E1-9c superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;genus:Methanosphaerula;species:Methanosphaerula palustris; 8.534695799 8.584343539 8.575937481 8.584866746 8.493502948 8.522479732 8.624043302 8.987086043 8.611261091 8.930629266 8.749379653 8.982075329 70734038 SMR_antibiotics Antibiotic resistance transporter Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.134198274 7.708811183 8.099538292 8.014756108 8.325574312 7.479631303 7.754023764 7.315220237 54015070 TerD Metal Resistance Tellurium Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 8.334864938 8.201347994 8.500735829 8.04203294 8.102533632 7.899266328 7.738830175 8.147937765 8.274822849 8.16596977 8.130771136 8.262762385 15679294 dnaK Stress Heat shock Methanothermobacter thermautotrophicus str. Delta H 8.24445099 8.480779959 7.526084572 7.663309483 7.751558739 7.196753225 8.241139508 7.755093548 7.671273729 8.263747315 7.934547126 145243730 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8.186058454 8.414891072 7.435764815 8.481105607 8.399530871 8.388494287 8.156222956 8.191068973 8.213981274 8.444578309 8.185645721 89113925 glx Carbon cycling Carbon degradation Lignin Phanerochaete chrysosporium superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 8.618806237 8.649976173 8.42450597 8.795327483 8.560311658 8.201840723 8.464377467 8.896550761 9.099428342 8.606852481 8.369369895 8.517297518 117992682 pcaG Organic Remediation Aromatics Other aromatics Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 9.923233732 9.88277336 9.832933991 9.676287148 9.710952937 9.461775216 9.553878221 9.671600625 9.798057216 9.672959986 9.665418202 9.435318366 119960877 pcaG Organic Remediation Aromatics Other aromatics Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 9.504498109 9.244048421 9.238433262 8.634806232 8.840394651 8.85145579 9.037625693 9.014866371 9.019721429 8.983824848 9.274305291 9.058849139 222105548 pcc Carbon cycling Carbon fixation Streptomyces toxytricini superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 9.175948002 9.036560999 9.01434605 8.628678659 8.600457419 8.606545916 8.436751704 8.144772056 8.388582349 8.433326036 8.502678512 94309642 pilin virulence pilin Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.392743525 8.300290971 8.731932456 8.996574052 8.191026555 8.543892354 8.614941685 8.823056151 8.48058988 8.691283574 8.600992917 83727149 pilin virulence pilin Ralstonia solanacearum UW551 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 8.497517005 8.050651655 8.230353036 8.629045699 8.504548671 8.19382598 8.263976165 8.197614029 8.214309118 8.317263795 8.591973669 8.15826674 74038464 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.477796713 8.516474862 8.902699856 8.241998989 8.04496827 8.018326265 8.117237989 8.659261475 8.024088542 8.123465862 8.12608948 266629969 katE Stress Oxygen stress Caulobacter segnis ATCC 21756 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 8.287247237 8.335454189 8.538748783 8.052121869 7.929689397 8.246732441 7.420904582 7.802132283 7.92494865 8.310636943 113530234 Catechol Organic Remediation Aromatics Other aromatics Ralstonia eutropha H16 8.240273006 8.635254644 8.307676491 7.712683389 8.073946402 8.206602381 8.533539068 7.993042915 8.496879448 7.840081501 7.761655887 7.539252917 116203911 ara_fungi Carbon cycling Carbon degradation Hemicellulose Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 8.479183715 8.67422718 8.443120643 8.018725567 8.201379184 8.384134131 8.226803255 8.139055927 8.014617647 8.283063425 8.436177541 8.363632396 116694374 tfdA Organic Remediation Aromatics Chlorinated aromatics Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.307461574 8.507420939 8.476097796 7.453618157 7.979878612 8.262854105 7.50349114 7.74135964 7.378405311 7.903674331 148554477 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 7.278087929 7.70599458 7.234916169 7.234537258 7.039487887 7.287422199 7.573154363 196196159 ahpF Stress Oxygen stress Alcanivorax sp. DG881 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 8.41343411 8.710373993 8.649360004 7.972059697 7.822875334 8.006718555 7.788373133 7.605524843 8.035933899 7.679200213 7.963546829 94985120 fnr Stress Oxygen stress Deinococcus geothermalis DSM 11300 9.282470549 9.158538906 9.039453305 8.730693989 8.841558519 8.948111905 9.183837803 8.802651406 8.96989578 8.922055564 9.274200915 9.321832187 126470054 bphC Organic Remediation Aromatics Polycyclic aromatics Rhodococcus rhodochrous superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 9.135193133 9.186466375 9.134492867 8.958582754 8.886012121 9.003891245 9.378946863 8.827701734 9.307329739 9.185277477 9.254169099 9.423474931 118413641 pstS Stress Phosphate limitation Campylobacter fetus subsp. fetus 82-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter fetus; 8.17124914 8.308391107 8.281473345 7.490698539 7.401836644 7.440233494 7.190766016 7.455495169 7.96166384 7.734443161 7.595725052 7.728094357 169820670 Catechol Organic Remediation Aromatics Other aromatics Burkholderia cenocepacia MC0-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 8.904906572 9.071445569 8.835512025 8.569727414 8.57398424 8.925305783 9.164764671 8.846367663 9.245766365 8.739468503 9.058787628 8.896606709 256668616 CODH Carbon cycling Carbon fixation Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 9.209367734 9.143999211 9.344692208 8.710778642 8.643657946 8.580486547 8.866299934 8.626215209 8.739663054 8.700818023 8.612146873 8.876780826 151302227 AprA Sulphur adenylylsulfate reductase Desulfococcus oleovorans Hxd3 8.543997555 8.468188857 8.534910545 7.793573972 7.649177506 7.764064847 7.84523051 7.748426099 8.158175241 8.013348185 7.982515554 8.340999177 73539976 mhpA Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.488091671 8.630976509 8.451533518 9.094997991 9.505979904 8.963911594 9.296846807 9.058103781 9.039247781 184193716 nitA Organic Remediation Aromatics Other aromatics Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.216379722 8.069086062 8.114877309 7.866161429 7.829388791 7.954563967 8.237750332 8.153815175 8.106120343 8.057908614 7.792884125 186476980 B_lactamase_A Antibiotic resistance Beta-lactamases Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.562469949 8.47496143 8.285459555 8.395178389 8.221592618 8.109205513 8.13276957 8.050373328 8.248661927 8.25956169 8.015450669 8.095702924 255058703 hly virulence hemolysin Geobacter sp. M18 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.72838937 8.823194743 8.521386369 8.212635397 8.151990701 8.572439162 8.107978371 8.188810312 7.949493672 8.3891202 151575684 phdCI Organic Remediation Aromatics Polycyclic aromatics Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.271190337 8.394621251 8.331349566 7.734883141 7.676535947 8.053946169 8.316487428 7.591151196 7.891565478 7.628229298 8.296767093 170736495 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Burkholderia cenocepacia MC0-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 8.834946249 8.865217785 8.620787838 8.438932194 8.365457619 8.487556068 8.775377467 8.181627423 8.848353861 8.283024282 8.769356096 8.154578036 28897261 arcB Stress Oxygen limitation Vibrio parahaemolyticus RIMD 2210633 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 8.323046794 8.194103486 8.281927514 7.657000958 7.337120235 7.688533498 7.239249498 7.120168474 7.88464006 7.651193068 7.716010924 7.848567928 165880079 exoglucanase Carbon cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 8.572254394 8.493411225 8.385629071 8.140102291 7.883163025 8.189291151 7.991439057 8.201367464 8.195636926 8.294493614 7.900253788 226227775 pstB Stress Phosphate limitation Gemmatimonas aurantiaca T-27 8.878235757 8.493348938 8.27109753 8.612178936 8.570211761 8.429328166 8.705110572 8.71580342 8.479206976 8.522959267 8.577046726 8.284514666 179346789 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Methylobacterium populi BJ001 8.882946033 9.075547847 8.774104892 8.624689604 8.697500078 8.830007886 8.801767205 8.73281984 8.631928114 8.826047322 8.927426402 8.784767195 60476050 rubisco Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 9.077069525 9.049468343 9.087185417 8.578742294 8.209986291 8.144681207 8.815643265 8.370212121 9.260130229 8.228464687 8.228479634 8.273643892 46581793 glnA Stress Nitrogen limitation Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough 7.908641579 8.264437842 8.254951228 8.150725676 8.038116823 7.955247369 7.594225736 7.917945723 7.93835013 7.977919601 7.618536004 7.93792533 209401960 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.648531146 8.303901955 8.480711508 8.344047103 8.351261094 8.411675684 8.379717261 8.539647345 8.480279034 8.650049491 8.794091651 8.547043504 153998395 TehB Metal Resistance Tellurium Candidatus Methanoregula boonei 6A8 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;genus:Candidatus Methanoregula;species:Candidatus Methanoregula boonei; 8.200012073 8.214429277 8.113635809 7.935501913 8.009831439 7.706142487 7.739962436 7.795288087 7.998825305 7.685992514 8.01733799 7.686218581 67086786 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 8.622849393 8.747832792 8.967151329 9.032096517 9.145874382 8.877397306 8.629564457 9.286259152 8.691960601 9.248221891 8.954816661 9.223632041 109626292 grpE Stress Heat shock Haloquadratum walsbyi DSM 16790 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloquadratum;species:Haloquadratum walsbyi; 9.44739408 8.77278241 8.734121377 9.507827973 9.453052844 9.121173686 9.502543044 9.259413348 8.948204631 8.954532505 8.815206887 8.883933209 28851214 CopA Metal Resistance Copper Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 10.20508168 9.685953965 9.520836472 10.0681945 9.930672588 9.682205082 10.11724828 9.756128927 9.998807521 10.06429027 10.07913953 10.0268342 103488518 xylanase Carbon cycling Carbon degradation Hemicellulose Sphingopyxis alaskensis RB2256 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 8.511081485 8.44874734 8.404089052 7.964878618 7.690164598 7.733038061 7.775537075 7.432109066 8.158206979 7.764063238 7.900087127 8.156282397 1684835 iro virulence Bordetella bronchiseptica superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 8.423274197 8.150746801 7.712644846 8.048039082 7.589850086 8.045429142 7.957946515 7.986605524 7.727576085 7.600507792 196170274 gyrB other category gyrB Anaeromyxobacter sp. K superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 10.17578154 10.3114847 10.00393909 10.4757301 10.36397061 10.2375521 10.1690022 10.63750675 9.846441154 10.51773241 10.58921863 10.25063944 12543784 tftH Organic Remediation Aromatics Chlorinated aromatics Corynebacterium glutamicum superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium; 7.672254409 7.980919012 7.924593255 7.979906781 8.301789293 8.104832713 8.005165936 8.11744194 187735797 pstA Stress Phosphate limitation Akkermansia muciniphila ATCC BAA-835 10.65764659 10.64779049 10.7621457 10.6919898 10.29735921 10.39967457 10.66618411 10.83985829 10.75055736 11.00430793 10.71568583 10.79047373 197626300 B_lactamase_C Antibiotic resistance Beta-lactamases Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 8.746010295 8.712188063 7.892180044 8.225747613 8.301469194 8.456442152 7.91650509 8.514081103 8.119959695 8.074166017 7.907933892 149782949 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.453295939 8.254760697 8.346258386 8.767316525 8.204688273 7.958830275 8.233757556 8.450583168 8.398056823 8.413480243 8.169847629 7.854855408 118173913 nmoA Organic Remediation Aromatics Nitoaromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.59940386 8.566533897 7.890684958 8.527194716 8.63378466 8.636341941 7.573467179 8.859696671 8.076554764 8.112891294 8.199871401 194291952 B_lactamase_C Antibiotic resistance Beta-lactamases Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 8.525247944 8.747467912 8.677770936 8.520291854 8.511044066 8.203983993 8.00366376 7.908618309 8.020069521 7.9215915 8.044904063 225173871 pstA Stress Phosphate limitation Desulfonatronospira thiodismutans ASO3-1 9.043256973 9.013473861 9.185823928 8.495522729 8.46589068 8.412063443 8.209394593 8.108674193 8.439027889 8.188356846 8.138730341 8.576706603 239808167 obgE Stress Radiation stress Geobacillus sp. WCH70 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.505089735 8.598389993 8.612580325 7.911016866 8.051723611 7.843039812 7.954773192 7.89082802 7.985616372 7.933045282 7.837287415 8.083682183 227991005 sox Sulphur Sulphur oxidation Meiothermus ruber DSM 1279 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 8.333793752 8.537026748 8.442098511 7.828427685 7.728173603 8.02729495 8.428350445 8.044296693 8.41184914 7.892869784 7.72854608 7.77884349 258647771 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Prevotella tannerae ATCC 51259 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella tannerae; 8.223998561 8.313887486 8.475436982 8.285458563 8.397019824 8.120007566 8.127557405 256381060 sigma_24 Stress Sigma factors Actinosynnema mirum DSM 43827 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinosynnemataceae;genus:Actinosynnema;species:Actinosynnema mirum; 7.917031601 7.72581635 7.62837014 7.813688984 7.951535234 8.125407016 8.202338857 7.839895088 8.168958689 90954619 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.982933673 8.183538301 8.288771904 7.203033021 7.183871408 7.260150187 7.76718867 6.903838564 6.942034935 7.268999027 262199591 AceA Carbon cycling Carbon degradation others Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Haliangiaceae;genus:Haliangium;species:Haliangium ochraceum; 9.68626876 9.349661527 9.135995744 10.03100067 9.822971623 9.650437974 9.929892459 9.983819227 9.58398595 9.632915455 9.850326942 9.226254997 108805150 phdCI Organic Remediation Aromatics Polycyclic aromatics Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 8.373495406 8.633156977 8.449710242 8.859413389 8.591033224 8.651243373 8.995037595 8.338282195 9.169912668 8.868693466 8.794240384 167564215 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia oklahomensis EO147 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia oklahomensis; 10.49664868 10.40354148 10.83831937 10.78335058 10.61335634 10.08484136 10.46341635 10.83432121 10.60861959 10.50663503 10.2596837 10.72794928 83317002 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.301905286 8.583471293 8.489035886 8.53009589 8.432544477 8.231009399 8.430582453 8.776275198 8.62548309 8.603841586 7.987899452 8.470506472 163746830 glnA Stress Nitrogen limitation Oceanibulbus indolifex HEL-45 8.692697971 8.334497545 8.215447618 8.19259738 8.283077093 8.071682879 8.501018633 8.269783911 8.409512741 8.329525693 8.493529396 168193100 glx Carbon cycling Carbon degradation Lignin Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 9.979609093 10.06799662 10.14597699 9.279632567 9.249351474 9.242204438 9.158045541 8.800927596 9.169279918 9.205640583 9.178329095 9.334550366 36783593 pcpE Organic Remediation Herbicides related compound Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 8.083273902 8.237416532 7.045417763 7.021706986 7.117257181 6.850253552 7.153860136 74421212 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nitrobacter winogradskyi Nb-255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 8.884680734 8.192524871 8.205326039 8.77077544 8.773255866 8.474550699 8.491351345 8.554674329 8.480276751 8.276522182 8.24209661 8.33047564 40743317 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.695095338 7.465874702 7.633923524 7.426193639 7.050032297 7.978278351 7.342485698 7.11266804 7.399310002 218719086 alkK Organic Remediation Others Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 9.237861893 8.867186156 9.271232228 8.725414764 8.951173927 8.561530913 8.59483838 8.658383803 8.564778082 8.85398318 9.010249377 9.088875611 88643342 dsrB Sulphur sulfite reductase uncultured prokaryote 8.661904213 8.679741315 8.45167384 8.397274361 8.365308669 8.318156193 8.319397644 8.105797971 8.000828852 190012295 CusA Metal Resistance Copper Stenotrophomonas maltophilia K279a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 7.950124225 7.653792743 6.930092482 6.628761601 108804593 bclA Organic Remediation Aromatics Aromatic carboxylic acid Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 8.693631614 8.650999196 8.719680389 8.16777592 8.253075712 8.110220147 8.070048824 8.376140123 8.15749021 8.176943366 8.182698667 214029816 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8.409440889 8.334919212 8.282292722 7.920836424 7.596509231 7.866144126 7.851363516 7.684557952 8.470565884 7.626955706 7.57194073 7.680598503 71555668 gyrB other category gyrB Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 8.630809462 8.859154938 8.866336019 8.963222801 9.276199711 8.990437283 8.932923831 9.296831878 8.999889887 9.226529699 9.135462986 9.062376463 218760664 pstB Stress Phosphate limitation Desulfatibacillum alkenivorans AK-01 8.23071894 8.483670097 8.676477394 8.472691135 8.406939756 8.328678052 8.199418208 8.339725895 8.544486884 8.153245614 8.274569581 8.368458045 166091069 clpC Stress Protein stress Microcystis aeruginosa NIES-843 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 8.766610817 8.671659917 8.824713258 8.37597658 8.194326723 8.031632333 7.934424585 8.025681163 8.235856443 7.753926732 7.944530842 8.365089068 206594662 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Ralstonia solanacearum IPO1609 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 8.051457309 8.149771593 8.341053744 8.122242593 7.806830783 8.141183259 7.827315953 8.155233841 8.084486843 7.79713935 7.896004624 29609322 NirB Nitrogen Assimilatory N reduction Streptomyces avermitilis MA-4680 9.092888534 8.123932339 9.003167502 8.992191901 8.855317273 8.652487295 8.685138958 8.614235833 8.866347912 8.875147142 8.232436501 126710588 pheA Organic Remediation Aromatics Other aromatics Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 8.671305145 8.875663405 9.051854189 8.140126274 8.420977987 8.544371542 8.758107804 8.067395943 8.77416116 8.226203974 8.394491174 8.580910056 108804049 narI Stress Oxygen limitation Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 9.221955049 8.959377305 9.132434979 8.730879169 8.633685726 8.892050165 8.548907474 8.71521718 8.302986002 8.722388406 8.804917807 8.967736924 187923687 MFS_antibiotic Antibiotic resistance transporter Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8.728120865 8.829622268 9.021874414 8.526139297 8.572674124 8.281872374 8.77958339 9.252084321 8.892975609 9.390639953 9.140653846 9.295463719 158329956 pcaG Organic Remediation Aromatics Other aromatics Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 8.199708446 8.484850183 8.436301444 7.799953289 7.993903192 8.246689155 8.21347492 7.510435076 8.400527135 7.556639458 7.662894394 7.767124627 253576694 cda Carbon cycling Carbon degradation Starch Paenibacillus sp. oral taxon 786 str. D14 8.39647425 8.617090041 8.640582842 8.185937005 7.97497291 7.827090845 7.929394809 7.751080705 7.841084844 7.812288444 7.687542768 8.06483794 22255726 nifH Nitrogen Nitrogen fixation Mesorhizobium sp. 128a superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium; 8.490940765 8.397001407 8.530162178 7.687048623 7.998414307 8.355149784 8.799965141 7.791264418 8.405485306 7.926805638 7.973987111 45386193 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 8.417402714 8.433958109 7.846486981 8.262128555 8.408570198 7.90996636 8.317559761 116488839 gyrB other category gyrB Silicibacter lacuscaerulensis 8.548947029 8.627267245 8.542825629 8.669738982 8.461519636 8.402437534 8.570418135 8.633687473 8.647426566 8.414881092 8.181101196 8.41744621 242799769 vdh Carbon cycling Carbon degradation Others Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 8.726123937 8.335996946 8.585721809 7.855077131 7.622026545 7.802469397 7.857499321 7.465094701 8.137449336 7.805415049 7.628348383 7.768951403 153813839 fnr Stress Oxygen stress Ruminococcus torques ATCC 27756 9.74254088 9.645792144 9.470957812 9.553695949 9.513614632 9.175869229 10.00427071 9.857131489 9.536898384 9.733260799 9.76275505 9.528457182 227980291 sigma_24 Stress Sigma factors Tsukamurella paurometabola DSM 20162 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 9.532089609 10.06523298 9.21971897 8.867465561 9.413265838 9.607440738 10.14062167 9.730428163 9.479903517 9.293061075 9.589638156 9.440518137 242133325 sigma_32 Stress Sigma factors Dickeya dadantii Ech703 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 8.567633175 8.759614238 8.76079655 9.181127628 9.046304981 8.790487336 9.153893865 9.220807566 8.645319563 9.355375868 9.008121456 8.96954968 91807192 nosZ Nitrogen Denitrification uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 8.213067661 7.963560518 8.376650864 7.950685979 7.800058687 7.558317787 7.330054837 7.21752989 7.785086229 7.546771196 7.594124424 7.471935382 118466294 fnr Stress Oxygen stress Mycobacterium avium 104 8.880802256 8.682525562 8.967451126 8.37059623 8.539119112 8.544069138 8.314062756 8.618951996 8.819749513 8.336089417 8.573260453 8.333800486 58040520 vanA Carbon cycling Carbon degradation Others Gluconobacter oxydans 621H superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter oxydans; 8.737672558 8.789383368 8.459028447 9.093379167 8.85058721 9.167283142 8.500803062 8.158358725 8.387481928 164606906 nagI Organic Remediation Aromatics Aromatic carboxylic acid Arthrobacter phenanthrenovorans 8.892859267 8.862432569 8.789047229 8.540731536 8.518105832 8.738514259 8.925618907 8.649927284 9.007141853 8.390770946 8.384963859 8.392079955 83972398 nosZ Nitrogen Denitrification uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 8.798818485 8.850259952 8.681081528 9.062743896 9.170929578 9.209248933 8.858871666 9.482448589 8.868550194 9.129864814 9.172850216 9.077431263 169793624 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.670816152 7.600545059 7.674004409 7.280106603 8.066884743 7.900863145 8.095965028 8.142317319 8.072337727 260864251 obgE Stress Radiation stress Ammonifex degensii KC4 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Ammonifex;species:Ammonifex degensii; 8.399809438 8.662610526 8.344102882 7.767283988 8.0608359 8.406944515 8.423556096 8.178693505 8.5131132 8.177281183 8.018720008 8.289143729 169793450 narG Nitrogen Denitrification uncultured bacterium 8.518110938 8.54011865 8.005455709 8.177171472 8.058240534 8.486759529 8.702904224 8.456387353 8.645991725 8.479354482 8.550776975 8.666402246 192764442 narG Nitrogen Denitrification uncultured bacterium 8.648517284 8.526097351 8.288014892 8.21276144 7.657936353 8.072121487 8.400730018 8.109637572 8.312741988 7.968897837 7.795098168 7.904722973 33596558 pstB Stress Phosphate limitation Bordetella parapertussis 12822 8.11808312 8.00676022 7.895822857 7.930312493 7.445876339 7.791736574 7.534829404 7.937715093 7.823248954 7.391815678 167367991 ChrA Metal Resistance Chromium Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.11886706 9.089128559 8.889626534 9.123803487 9.223936312 9.01045022 9.107200512 9.637976181 9.339641243 9.543697677 9.457007228 9.520691781 98976419 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sphingopyxis alaskensis RB2256 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 8.551612883 8.561724584 8.601662586 7.941637598 7.853687371 7.947956978 7.698150735 7.419802814 8.061065903 7.686441101 7.56210555 8.027195041 119386813 nmoA Organic Remediation Aromatics Nitoaromatics Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.486513453 8.295292942 8.447950559 8.418282142 8.475155354 8.129713041 8.28989768 8.555480662 8.569235779 8.464028927 8.148153456 8.396838236 159177791 oxyR Stress Oxygen stress alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 8.239429072 8.184151226 8.405825394 8.382564472 8.106861906 8.182037172 8.352141947 8.262959273 8.179417987 8.288481056 7.589958781 228855579 srt virulence surface protein Bacillus thuringiensis IBL 4222 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus thuringiensis; 8.065295821 7.809638637 7.834438362 84392538 CODH Carbon cycling Carbon fixation Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 9.015386711 9.202515552 8.887384427 8.70509787 8.479514999 8.790568309 8.760753019 8.525628734 8.868018228 8.645419439 8.71269864 9.005376675 147920843 katE Stress Oxygen stress uncultured methanogenic archaeon RC-I superkingdom:Archaea;phylum:Euryarchaeota; 9.48500887 9.338864488 9.401283452 8.909733897 8.828235323 8.958983566 8.934561213 8.742714718 8.895434991 8.921425906 8.97516009 9.179632794 91776727 katE Stress Oxygen stress Methylobacillus flagellatus KT superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 7.824351739 7.704821424 7.690292645 7.809860234 8.206519121 8.132634038 7.691978902 7.953095009 99083157 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.401406358 8.383704147 8.467945365 7.821461578 7.630668056 7.753449482 7.352690442 7.165653874 8.019696282 7.385018124 7.374409058 7.789808811 14024046 pcpB Organic Remediation Herbicides related compound Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 8.666121107 8.738692219 8.662079707 7.967901073 8.091413166 8.445131961 8.60821677 8.166916857 8.686827643 7.813240353 8.060272949 7.956922858 169631203 nmoA Organic Remediation Aromatics Nitoaromatics Mycobacterium abscessus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.169506808 8.957160412 8.146163338 7.524334404 8.205752045 8.778367005 7.947161978 8.476643272 7.795387139 7.592582939 8.194369322 3378419 nagG Organic Remediation Aromatics Aromatic carboxylic acid Novosphingobium aromaticivorans 8.807786098 8.589366187 8.590969169 8.11327669 8.076899846 8.144039938 8.18750318 8.165648083 7.804076601 77970622 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 9.449668263 9.30552854 9.317045604 9.98834994 9.840012569 9.244192201 9.539548403 10.16937018 9.525097362 9.880876044 9.663410831 9.824606402 27884046 ureC Nitrogen Ammonification Burkholderia sp. RS99 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.46598694 7.898363977 7.654515044 7.841683529 7.838145605 8.200752987 7.774810856 7.592837214 7.829552168 113889821 endochitinase Carbon cycling Carbon degradation Chitin Shewanella sp. MR-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 8.979786442 8.965985681 8.968223842 8.387872359 8.519043342 8.922224042 8.732729444 8.846203572 8.39516474 8.543462119 8.446916827 13816008 mer Metal Resistance Mercury Sulfolobus solfataricus P2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus;species:Sulfolobus solfataricus; 7.273329332 7.347543463 7.4177803 7.22312084 7.108599838 7.418911199 7.48962043 7.815579643 91709422 ZntA Metal Resistance Zinc Methylobacillus flagellatus KT 8.421042733 8.08995621 7.559253841 7.71485434 7.807563993 8.159970332 7.450853946 7.478785984 7.779811726 120563162 AmiE Organic Remediation Aromatics Other aromatics Desulfovibrio vulgaris subsp. vulgaris DP4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 8.861091543 8.860344559 8.563043087 7.970168322 8.276729448 8.598943598 8.783551695 7.730999043 8.592652817 8.395668052 8.296784808 8.359946182 257454642 ppk Phosphorus Phosphorus utilization Enhydrobacter aerosaccus SK60 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Enhydrobacter;species:Enhydrobacter aerosaccus; 9.583301286 9.186179151 9.755876228 9.268110288 9.022939486 9.129446005 9.603879805 9.235477942 9.647817425 9.094446053 9.185777954 9.072250292 28855646 CopA Metal Resistance Copper Pseudomonas syringae pv. tomato str. DC3000 9.413432422 9.519837058 9.435525547 9.707588623 9.700532396 9.490627509 208434240 AmiE Organic Remediation Aromatics Other aromatics Helicobacter pylori G27 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter pylori; 8.399241013 8.032145407 7.468763519 7.373240498 7.454662093 7.233678333 7.099256935 7.838881815 7.532814268 7.557293831 7.663573757 46127961 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 7.190003778 7.187128861 7.253812111 6.769030916 6.743160248 7.389527423 7.101425196 7.026318084 6.915068769 259048684 major_capsid_protein Bacteria phage STRUCTURAL Pseudomonas phage LIT1 order:Caudovirales;family:Podoviridae;genus:N4-like viruses; 8.765434987 8.515784958 8.774596053 8.659086077 8.627571253 8.473505932 7.974532649 8.842538252 7.935523605 8.44215968 8.574389644 8.677248241 188028898 nasA Nitrogen Assimilatory N reduction Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 7.753106026 7.747997882 7.658363712 7.391790528 7.560286857 7.836345943 7.437791005 7.713505456 7.35434725 86556067 ureC Nitrogen Ammonification Synechococcus sp. JA-2-3B'a(2-13) superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.939497757 8.650993294 8.687182969 8.466389713 8.414368777 8.40535155 8.109791635 8.205585234 8.453346725 7.972363454 8.231892421 8.264443112 119898251 qorL Organic Remediation Aromatics Polycyclic aromatics Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8.236742458 8.218577355 7.746530924 7.815982132 8.198035985 8.097626694 8.246248518 7.995985395 156972780 gyrB other category gyrB Vibrio harveyi ATCC BAA-1116 8.492115383 8.350764945 8.234378247 8.955508343 9.448309948 9.082023467 8.901219292 9.294615468 8.827320493 9.038480044 9.112243562 9.3588452 118579305 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 8.644159651 8.808509295 8.745327552 8.095792903 8.046734167 7.974172589 7.838436724 7.870204023 7.882918571 7.766842611 7.650562255 8.018871444 115511395 Xamo Organic Remediation Other Hydrocarbons Pseudonocardia sp. TY-7 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia; 9.676557829 9.413062532 8.513594324 7.206084961 8.850719235 11595710 nitA Organic Remediation Aromatics Other aromatics Neurospora crassa superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora; 9.463864653 9.348276321 9.499866136 8.912155048 8.868034549 8.715505132 8.917398766 8.722875999 8.761009972 8.819777706 9.068758907 8.987676967 39650415 ChrA Metal Resistance Chromium Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.55756816 8.399512679 8.451286826 8.107104507 8.249368074 7.963559228 8.244146628 8.729386132 8.595343224 8.689475788 8.464223608 8.52069312 9843807 nirS Nitrogen Denitrification Paracoccus pantotrophus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 8.612954613 8.842574306 8.373503326 8.820077452 9.023805915 8.849887768 9.473972716 9.253906557 8.827505142 8.720595415 9.093620779 8.793482952 63029763 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.495889096 8.21739723 7.718127127 7.723934653 7.851185657 8.12581366 8.040363645 8.002032142 7.870697713 8.018258326 8.003578061 209486033 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.524125472 9.254705012 9.392352877 8.994667169 8.762792738 8.93435716 8.920755734 8.805344071 9.160126995 9.145146047 9.239560603 9.118390136 85668303 nreB Metal Resistance Nickel Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 9.618305758 9.655428109 9.852580288 9.174252695 9.239033347 9.157217532 9.34653587 9.703893296 9.437773223 9.635912428 9.324823391 9.535963885 197285027 alkK Organic Remediation Others Proteus mirabilis HI4320 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 8.103442651 8.196964796 8.312445998 7.667326482 7.453563251 7.483150059 7.131925487 7.367895555 7.657401863 7.315003035 7.543852932 222081397 nmoA Organic Remediation Aromatics Nitoaromatics Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 9.045461409 8.595320289 8.913203408 8.997246524 9.070966051 8.966084229 9.296059306 8.446255756 8.677748941 8.301184029 161390777 sox Sulphur Sulphur oxidation Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 8.952211143 8.931123496 9.158888797 8.57391355 8.366034385 8.441269073 8.293730744 8.075683159 8.180125882 8.283053856 8.454625279 90202964 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 10.87800732 10.72063232 10.79444909 9.726755522 10.15615299 10.4366907 10.77793834 10.07116494 10.76489306 9.977475541 10.17252992 10.09159311 68263153 alkK Organic Remediation Others Corynebacterium jeikeium K411 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 8.510684194 8.502180845 8.831869171 8.151731124 8.047599309 8.153700409 7.947900063 7.763205774 8.019485644 7.914127626 8.231674354 109648132 dmsA Organic Remediation Others Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 7.387655877 7.671744996 7.738089576 7.694127684 6.917803657 8.056586108 7.4110306 8.104726155 118469041 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.104481053 8.26155415 8.085936334 7.936228175 7.889690079 7.616951373 7.789525455 7.480474122 7.636009466 7.470010281 7.680399937 109455406 atzB Organic Remediation Herbicides related compound Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 8.214671667 8.2396436 7.97111096 7.857550373 8.1876814 8.280360105 8.152628122 8.139848431 7.857336203 8.15076672 7.866000081 115524006 nitA Organic Remediation Aromatics Other aromatics Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.370162607 8.124042364 7.572738209 7.614581044 7.422087176 7.34660555 7.460258877 7.846378877 7.73754242 7.406392031 7.621611202 16078882 pcc Carbon cycling Carbon fixation Bacillus subtilis subsp. subtilis str. 168 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 9.275267567 8.864382551 8.832398985 9.663866313 9.489696533 9.399493948 9.681156929 9.669584719 9.11710658 9.2957535 9.555024382 8.964259598 51245731 ArsC Metal Resistance Arsenic Desulfotalea psychrophila LSv54 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfotalea;species:Desulfotalea psychrophila; 8.389223199 8.706747114 8.766643982 7.67460992 7.745855141 7.911356547 7.729920338 7.227670536 8.121526234 7.700414287 7.808038759 7.705212419 219547455 CadA Metal Resistance Cadmium Candidatus Methanosphaerula palustris E1-9c superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;genus:Methanosphaerula;species:Methanosphaerula palustris; 8.249777966 8.065366801 8.463207802 7.122985673 7.466268108 7.37068744 7.165509053 7.296265298 7.394864673 7.748471054 52004829 amyA Carbon cycling Carbon degradation Starch Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 7.857378772 7.689351467 7.292752698 7.807725408 7.743717397 7.393496514 7.550649864 116698348 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 9.739375674 9.582219022 9.533112827 9.455854078 9.458663393 9.274356432 9.612680261 9.4220399 9.316721978 9.430040501 9.45181635 9.513415895 153094025 nrfA Nitrogen Dissimilatory N reduction Mannheimia haemolytica PHL213 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Mannheimia;species:Mannheimia haemolytica; 7.29444188 7.237297941 168701487 pstS Stress Phosphate limitation Gemmata obscuriglobus UQM 2246 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata;species:Gemmata obscuriglobus; 8.469086176 8.393994772 8.454084942 8.093939575 7.722907644 7.886652775 8.055364195 7.891123813 8.242918338 7.814410309 7.936759825 7.790436571 29832204 NirB Nitrogen Assimilatory N reduction Streptomyces avermitilis MA-4680 9.266240645 9.525449131 9.034838873 8.665571545 8.36642695 283821650 BchY other category chlorophyllide reductase Rhodomicrobium vannielii ATCC 17100 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 8.518095144 8.44166063 8.333195625 9.127528966 8.92505108 8.734640873 8.969939866 9.099746991 8.63831014 8.977422107 8.782044557 8.302169634 118168694 carA Organic Remediation Aromatics Heterocyclic aromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 9.387429404 9.022409204 8.82768096 8.497710742 8.589535615 8.773343423 8.79327803 8.878079101 8.803423737 8.732483924 8.792920139 8.860131522 226720418 glnA Stress Nitrogen limitation Azotobacter vinelandii DJ 8.365312593 7.983033433 8.156359793 8.235188274 8.015860779 7.818495279 7.90914901 8.179079696 7.990196114 8.000300849 7.511375778 94551812 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Candidatus Koribacter versatilis Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 8.854416179 8.779645094 9.14416414 8.282838788 8.140961541 8.494778958 8.508796557 8.279064525 8.550659777 8.394196448 8.565215222 8.670601948 169759197 nbzC Organic Remediation Aromatics Nitoaromatics Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.204728307 8.037235536 8.156640831 7.968415123 7.860500637 7.781574899 7.69407419 7.319937913 7.912112168 7.561317263 7.693496358 7.607816797 85860726 katE Stress Oxygen stress Syntrophus aciditrophicus SB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Syntrophus;species:Syntrophus aciditrophicus; 8.515860241 8.270837678 8.259924973 7.541020236 7.391303255 7.866287416 7.498922237 7.596708353 8.011874368 7.76131678 7.63491396 7.891551633 77378681 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.026180261 8.520550498 8.905870354 8.20410673 8.191032012 8.422175282 8.695743777 7.947681164 8.867749052 8.32221638 8.222198923 8.279016221 118473742 pcpB Organic Remediation Herbicides related compound Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 9.282228105 9.358832972 9.318742089 9.118439268 9.30735534 9.218444716 9.128648547 9.535051241 8.813644552 9.488997056 9.43896572 9.480972229 92113319 glnA Stress Nitrogen limitation Chromohalobacter salexigens DSM 3043 8.986144481 9.012930748 9.122842645 8.76202309 8.770126336 8.649387752 8.664171813 8.521482387 8.942635921 8.650205956 8.969088785 8.681112856 84382638 pstB Stress Phosphate limitation Janibacter sp. HTCC2649 8.191650176 7.808770292 8.085553767 7.999107451 7.676440028 7.667186993 7.495248496 7.847395504 7.724092474 7.540675892 7.617730298 183599793 grpE Stress Heat shock Providencia stuartii ATCC 25827 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia stuartii; 7.488977195 7.303649582 7.174300965 7.454862423 7.234462005 7.287833136 206591646 iro virulence Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 9.181070827 9.691210211 9.377182004 9.031863638 9.0245061 8.955384989 8.892847365 9.243375838 9.182375591 9.21389837 9.26208108 9.41248351 148554605 vanA Carbon cycling Carbon degradation Others Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.446768716 8.661622706 8.353474832 8.150815176 8.291817526 8.320321884 8.542378848 8.291628416 8.720956384 8.293095456 8.315202898 8.207974167 167034806 iro virulence Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 9.547793456 9.460184319 9.757497995 9.465461741 9.592431744 9.207085738 9.443910938 9.595573781 9.304172808 9.598743463 9.425022716 9.473951654 227863579 pstB Stress Phosphate limitation Lactobacillus ultunensis DSM 16047 8.189384362 8.268890835 8.342198248 7.629766118 7.560589468 7.54621587 6.969990631 7.094281367 7.581818524 7.569477293 7.672305635 126179837 pstB Stress Phosphate limitation Methanoculleus marisnigri JR1 9.087854514 9.071986268 9.188607104 8.574537051 8.392446651 8.664481566 8.562063895 8.457180411 8.732067592 8.646311285 8.678783197 8.692824182 119671268 sigma_24 Stress Sigma factors Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 9.721995122 9.625920556 9.988645198 9.28024146 9.10739997 9.041482296 9.062285722 8.857492036 9.353066912 9.326371868 9.388834688 9.298856133 68347885 katE Stress Oxygen stress Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.861251851 8.163793875 7.910925417 8.183624298 7.826067095 8.260507615 7.8861026 7.897642308 7.828642622 118027567 ChrA Metal Resistance Chromium Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.655974475 7.834774845 7.391912954 7.501559368 7.624334672 7.667381119 85688078 B_lactamase_A Antibiotic resistance Beta-lactamases Erythrobacter sp. NAP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 8.768332072 8.608271142 8.71678591 7.886750229 8.299372805 8.09979954 8.306122255 7.99796924 8.385404499 7.784186924 8.177052812 7.763936276 91784418 nmoA Organic Remediation Aromatics Nitoaromatics Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 9.038735066 8.559887589 8.069614657 9.162822727 8.995692941 8.972925144 8.52781902 9.175711427 8.618946976 8.678632842 8.98333741 8.527710029 219949079 amyA Carbon cycling Carbon degradation Starch Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 8.829953323 8.798007213 8.557612034 8.607170754 9.264292371 8.851117119 9.056726897 9.163710793 21238927 gyrB other category gyrB Streptosporangium violaceochromogenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium; 8.380100621 8.340465605 8.208566138 8.829600295 8.874200496 8.577965612 8.555066866 8.771780694 8.448813989 8.51935399 8.139448118 8.007443331 32445025 sigma_70 Stress Sigma factors Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 9.25417357 9.320811987 9.444794051 8.830997104 8.668191909 8.602465804 8.437403328 8.481036226 8.445136573 8.550483527 8.561699921 8.90411251 161330961 pstB Stress Phosphate limitation Shewanella benthica KT99 9.002441073 8.633668273 9.10913551 7.878222772 7.905413403 7.488093214 8.156178222 8.06205657 8.403144892 259347288 glnA Stress Nitrogen limitation Silicibacter sp. TrichCH4B 8.490608361 8.207886999 8.181781661 8.244492963 8.205566924 8.020665649 7.975026619 7.77579541 7.846008612 8.114578095 7.930173488 7.646847817 145606584 cadBD Metal Resistance Cadmium Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 8.998594248 9.106397462 9.111833743 8.586983033 7.898227721 8.354610024 8.769822585 8.582386766 8.4978071 8.466583596 8.633021503 229378948 ahpC Stress Oxygen stress Oxalobacter formigenes OXCC13 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Oxalobacter;species:Oxalobacter formigenes; 8.077174997 7.924576076 8.215260417 6.886808974 7.475851103 7.791062368 7.777749071 6.601024661 7.951676449 7.132868921 7.537865362 6.870059379 73535152 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.002344673 7.952676478 8.226250874 7.967605184 7.974379161 7.884690956 8.019299067 7.924035226 8.032924273 7.787262068 7.741974501 7.872075807 160343213 cap virulence capsule Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 8.90859675 9.082194215 8.769494012 8.577749183 8.397862896 8.80003802 9.024528385 8.700531634 8.637459259 8.626248162 8.568692847 8.637560538 238762851 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Yersinia kristensenii ATCC 33638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia kristensenii; 8.506710734 8.549350506 8.64774683 8.33723791 8.177824718 8.392333319 7.882603336 8.365614789 7.970840775 8.439152536 8.684667151 8.297593982 219947584 fnr Stress Oxygen stress Methylobacterium nodulans ORS 2060 9.485269802 9.719359697 9.609869135 8.782210534 8.910046479 9.298517147 9.657646971 9.019233012 9.690116466 9.103000979 9.354528553 9.320326391 149210925 tfdA Organic Remediation Aromatics Chlorinated aromatics Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 8.102558543 8.315256473 7.489884711 7.303883161 7.547775549 6.829642051 7.655351254 6.998477265 7.180715972 7.232455189 54022723 AmiE Organic Remediation Aromatics Other aromatics Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 8.201019938 8.140843592 8.396793497 8.064710983 8.35485964 7.76076551 8.449021032 8.113140711 8.410013363 7.958136048 260218675 SMR_antibiotics Antibiotic resistance transporter Cronobacter turicensis z3032 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter turicensis; 8.165676475 8.043580977 8.403719501 7.87725541 7.708117278 7.443378237 7.506453989 7.863497241 7.533324308 7.505768329 7.55890335 133776955 CopA Metal Resistance Copper Collinsella aerofaciens ATCC 25986 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella aerofaciens; 8.697449764 8.750549126 7.831751466 7.836908275 8.39673257 7.934030435 7.931002565 7.601329405 7.976745158 189209261 nahF Organic Remediation Aromatics Polycyclic aromatics Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 8.568211058 8.412238088 8.400238936 7.40889003 7.275395702 7.440586265 7.008797225 7.366713387 7.549357497 7.488882683 7.680680667 7.986466337 154685082 SMR_antibiotics Antibiotic resistance transporter Bacillus amyloliquefaciens FZB42 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 8.164935613 8.250014773 7.569378737 7.741313697 8.037136043 7.809556075 8.133302191 8.00581963 8.068861529 8.224112937 8.122285738 227438051 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 8.163958157 8.308207949 8.066421704 8.135416452 8.030517309 7.9047754 8.093679762 8.033901307 8.148646612 8.229739269 8.212848089 7.868176264 145620304 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 8.948745389 8.980442768 8.936996451 8.24616626 8.283476765 8.210206753 8.109978923 8.087950637 8.317121351 8.235702698 8.021872798 8.349213009 168702521 sigma_24 Stress Sigma factors Gemmata obscuriglobus UQM 2246 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata;species:Gemmata obscuriglobus; 9.57630589 9.592645585 9.545455683 8.692505308 8.579343067 8.622772771 8.814480728 8.536472651 8.973223359 9.022660959 9.046062397 124005610 catB Organic Remediation Aromatics BTEX and related aromatics Microscilla marina ATCC 23134 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Microscilla;species:Microscilla marina; 8.661217719 8.650638595 8.642425976 8.446407305 8.182803476 8.202435664 8.25010692 8.33339219 8.141846361 8.143883705 8.135847556 8.323280052 124363426 CadA Metal Resistance Cadmium Methanocorpusculum labreanum Z superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanocorpusculaceae;genus:Methanocorpusculum;species:Methanocorpusculum labreanum; 8.902758401 8.82993861 8.923166366 8.43073067 8.197188606 8.143017648 8.063534255 8.216417446 148261979 antioxidant Bioleaching Metal Resistance Acidiphilium cryptum JF-5 8.153188103 8.596831352 8.792332423 8.888717837 9.158882456 9.058373991 8.916542615 9.27506009 8.97197771 9.021215011 8.868071654 8.764210803 116612878 CadA Metal Resistance Cadmium Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8.475836043 8.197524574 8.510151111 8.175035446 8.197332044 8.416265879 8.2032897 8.212104182 8.322265291 8.202451499 8.274175251 8.109113153 85373887 AceA Carbon cycling Carbon degradation others Erythrobacter litoralis HTCC2594 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 8.963436788 8.820120157 8.77955164 8.688492195 8.66893581 8.518293175 8.739342114 8.7769574 8.713617518 8.620810502 8.828408255 8.567261362 148499980 bphA Organic Remediation Aromatics Polycyclic aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.460466247 8.213816315 8.684807413 8.199823837 7.825012792 8.335578442 8.18501847 8.454381728 8.212237235 8.200331319 8.034920631 39649964 ppx Phosphorus Phosphorus utilization Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.444648573 8.518312317 8.545146676 7.824748599 7.971021762 8.107669891 8.558745072 7.977930318 8.407980269 8.242700568 8.265225699 8.152245926 237687084 pstC Stress Phosphate limitation Teredinibacter turnerae T7901 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 8.363647739 8.547503708 8.370052154 8.137531478 7.985290137 8.264873824 7.931627925 8.188422621 7.812445147 7.668244848 7.987528911 118424418 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.591154453 8.186207467 7.897637251 8.171512193 8.42189113 8.330145623 8.538727721 8.096308197 163814087 Al Metal Resistance Aluminum Coprococcus eutactus ATCC 27759 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Coprococcus;species:Coprococcus eutactus; 7.261292604 7.090983019 240102656 cda Carbon cycling Carbon degradation Starch Thermococcus gammatolerans EJ3 8.478313988 8.16680709 8.563429122 7.685164222 8.013412186 7.562234108 8.011460846 197124673 hydrogenase Energy process Energy process Anaeromyxobacter sp. K superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 10.63906704 10.64974818 10.19690374 10.08555153 9.806016936 10.12410734 10.30528716 10.04413057 10.19707109 9.891361911 10.08950807 9.977919452 94314013 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.979940529 8.951355896 8.962347697 8.884613169 8.638901513 8.266347571 8.797109199 8.065407086 8.682570202 8.528434485 8.74334821 3142158 scnABC Organic Remediation Others Thiobacillus thioparus 8.651745502 8.144900965 8.139867039 7.708693307 8.011515051 8.058522324 8.236843788 7.224865951 8.428311375 7.468438541 7.776845561 7.704531696 255510429 dsrA Sulphur sulfite reductase Clostridium carboxidivorans P7 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium carboxidivorans; 9.007521488 9.053025238 8.997735482 8.726866687 8.716866274 8.666819624 8.799716 8.584749299 8.876986175 8.844173626 8.862618572 8.682318961 147886098 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 9.682843741 9.613794429 9.363410367 8.99116647 9.248150158 9.111041514 9.059544638 9.069699763 9.105578719 9.35098005 9.443418356 9.469320338 78102285 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.958314729 8.787590746 8.924997883 8.292726416 8.165456703 8.106616331 8.083768998 8.08405155 8.269266993 8.19530491 7.96633057 8.240756883 253577139 glnR Stress Nitrogen limitation Paenibacillus sp. oral taxon 786 str. D14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 8.354139023 7.810730492 7.246327532 6.828282105 7.299427216 7.328941402 7.18038564 7.292791961 108765945 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 9.228989294 9.265239658 9.057656325 8.804670302 8.510684738 8.730103632 8.918169515 8.827784533 8.429280471 9.067365997 9.204027676 8.828851805 119898786 fcbC Organic Remediation Aromatics Chlorinated aromatics Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8.323593114 8.381977653 7.491291506 7.147815205 7.488849945 7.889752503 7.624946421 7.367336161 7.377627581 163734530 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 8.318723143 8.330261163 7.604875072 7.542223915 7.701964967 7.751686787 7.313903855 7.603029121 7.487413681 7.749354482 227341054 SMR_antibiotics Antibiotic resistance transporter Rhizobium sp. NGR234 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 9.388781076 9.287202524 9.661932475 9.086495485 9.103863361 8.935404023 9.172361474 9.09025253 8.979276718 9.253032917 9.20803598 9.075675536 13422403 ChrA Metal Resistance Chromium Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 8.381620807 8.466901289 7.829912368 7.950756975 8.158551203 8.259749038 7.480128815 7.641393972 7.925985886 90198726 alkB Organic Remediation Other Hydrocarbons Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 9.530207728 9.629117061 9.387202798 9.139443888 9.023556402 9.074007726 9.304172596 9.06183674 9.25319296 9.4435598 9.594906313 9.353984231 77820040 nirS Nitrogen Denitrification uncultured organism 8.555077805 8.208926738 8.156463347 8.300909122 8.310555846 8.041110564 8.082626073 8.782017057 8.423339443 8.55589681 8.446132486 8.655520649 205343114 ZitB Metal Resistance Zinc Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 8.309591931 7.922116694 7.299600522 7.32562449 7.619487707 7.108271591 7.349589415 7.77949583 7.23572447 7.622109845 7.458068715 109660059 ureC Nitrogen Ammonification unidentified bacterial contaminant superkingdom:Bacteria; 8.199187713 7.902333044 8.235544048 8.141434057 8.135340874 7.744936135 7.884076488 8.046670363 7.913502541 7.696377747 7.515227417 15055577 dsrB Sulphur sulfite reductase Desulfotomaculum ruminis superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 8.238219213 8.044502823 8.030625419 8.092055791 7.971501774 7.708904485 8.363601721 8.229658597 8.159802519 8.300392847 8.182303172 209401814 narG Nitrogen Denitrification uncultured bacterium 8.179871195 7.982364638 8.15509375 7.891907565 7.795449728 7.678824709 7.569056241 7.420487533 7.94641172 7.569142215 7.691740163 7.580310242 89276731 pcpE Organic Remediation Herbicides related compound Sphingomonas sp. BHC-A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.921718308 8.735141938 8.786199713 8.385978833 8.845581346 8.335077532 8.471656842 8.886661365 8.432630088 149811696 AceB Carbon cycling Carbon degradation others Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 9.45498658 9.462746689 9.743586104 8.840286225 8.853683936 8.655745528 8.325136752 8.323842676 8.161105723 8.078396823 8.208166958 7.998668266 209498710 proV Stress Osmotic stress Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.540004013 8.325273518 8.322532653 7.9417798 8.04456262 7.735117863 7.606387813 7.721571811 7.649269751 7.97261903 139478535 mer Metal Resistance Mercury uncultured soil bacterium superkingdom:Bacteria; 8.060655213 7.958674944 7.747118214 7.872010097 7.930392585 7.770502194 7.511252648 7.643342079 7.697287615 147849367 NiR Nitrogen Assimilatory N reduction Synechococcus sp. WH 7803 8.916026572 8.83375646 8.913702951 8.415241448 8.174770398 8.214867483 7.789484327 8.047641598 8.286052837 8.210214843 8.278823541 8.475543061 219537395 SMR_antibiotics Antibiotic resistance transporter Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 8.695918964 8.71814687 8.537262135 7.782634881 7.705865944 7.654469216 7.638891943 7.51853209 7.95869397 7.819111715 7.641388629 7.833744747 118729717 proO Organic Remediation Aromatics Other aromatics Delftia acidovorans SPH-1 9.492777579 9.374203844 9.316685935 8.991336511 9.084260028 8.814951601 8.821419801 9.157195083 8.824446744 9.243857795 9.171710584 9.221579926 171853584 hly virulence hemolysin Candidatus Phytoplasma australiense superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Acholeplasmatales;family:Acholeplasmataceae;genus:Candidatus Phytoplasma; 8.603395703 8.339473412 8.484486095 8.048857795 7.508687242 8.023512153 7.786713381 7.468572757 7.953573912 7.602169738 7.48728592 7.996241909 56475057 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 8.055249026 7.859505892 7.586737331 7.65677487 7.441075017 7.129266085 7.205214223 7.668852919 7.543173979 7.374226854 7.242222047 60475992 rubisco Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.516152709 7.988791797 8.201724953 7.808138153 8.026690976 7.455696579 7.503591442 7.330196546 7.504774371 7.453759519 149904322 fnr Stress Oxygen stress Clostridium beijerinckii NCIMB 8052 7.349678706 6.982269548 259501206 nplT Carbon cycling Carbon degradation Starch Lactobacillus iners DSM 13335 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus iners; 8.745777894 8.820534319 8.952734705 8.294630049 8.059827267 8.257990306 7.843710397 7.573724224 7.862341831 7.835413535 8.032925035 8.204447634 149928046 CopA Metal Resistance Copper Limnobacter sp. MED105 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 8.383553874 8.233085217 8.527381531 8.130436188 7.445335286 8.124503869 8.602530395 8.471145474 8.274249023 8.515400951 160917548 narG Nitrogen Denitrification uncultured bacterium 8.676321066 8.469384979 7.88768662 7.806482526 8.070957811 7.902218165 7.950169695 7.842618863 8.112880113 7.701411605 8.015704023 115371162 pilin virulence pilin Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 8.231675309 8.472964853 8.991306961 8.328883413 8.57774809 8.647730815 8.418096681 8.517283276 8.431062424 8.422856813 8.726540651 8.516662715 256579046 nrfA Nitrogen Dissimilatory N reduction Desulfomicrobium baculatum DSM 4028 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfomicrobiaceae;genus:Desulfomicrobium;species:Desulfomicrobium baculatum; 9.01579921 8.844222386 8.356046462 8.809593015 8.739239474 8.954657697 8.340573376 8.930817546 8.495490788 8.755308195 9.215435875 8.358428212 258544953 iro virulence Cardiobacterium hominis ATCC 15826 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Cardiobacteriales;family:Cardiobacteriaceae;genus:Cardiobacterium;species:Cardiobacterium hominis; 8.36114058 8.399991406 8.29248651 7.61157707 7.812337676 8.362773977 8.593125594 8.03253991 8.421192294 8.046450913 7.57786178 8.453206871 116608994 narI Stress Oxygen limitation Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8.633371504 8.322872078 8.379807465 8.708134979 8.556899662 8.450320792 8.678107649 8.787155954 8.365624409 8.578364932 8.695770226 8.342080539 195970039 mer Metal Resistance Mercury Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 8.098222449 8.347447689 8.257745995 8.378294515 8.273504402 8.294070968 8.221962112 8.42883194 8.402235045 8.459732537 8.22225272 8.269811743 225169256 hrcA Stress Heat shock Dethiobacter alkaliphilus AHT 1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Syntrophomonadaceae;genus:Dethiobacter;species:Dethiobacter alkaliphilus; 8.606068559 8.373495302 8.603223077 8.131551735 7.886634239 7.937890567 7.661096042 7.536956078 8.184613022 7.742580567 7.617269822 7.972205828 108799341 chnB Organic Remediation Other Hydrocarbons Mycobacterium sp. MCS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.427661756 7.553612732 7.636972349 7.336151557 7.660206254 7.831991541 7.652978566 7.426427355 146275225 sigma_24 Stress Sigma factors Pelotomaculum thermopropionicum SI superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Pelotomaculum;species:Pelotomaculum thermopropionicum; 8.268733633 8.274108445 8.179725984 8.257882362 8.371565676 8.531079915 8.247577133 8.500818538 8.61294094 8.612524511 8.55368843 8.329326638 86747856 SMR_antibiotics Antibiotic resistance transporter Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.944433619 8.50913207 8.530303386 8.381450979 8.193808662 8.206463864 8.506156431 8.648245075 8.445109162 8.656423667 8.448592757 170290908 atzA Organic Remediation Herbicides related compound Candidatus Korarchaeum cryptofilum OPF8 superkingdom:Archaea;phylum:Korarchaeota;genus:Candidatus Korarchaeum;species:Candidatus Korarchaeum cryptofilum; 8.507125533 8.034436457 8.351519833 7.497111179 7.515908366 7.516258535 7.146548303 7.426150254 7.849766466 7.476804885 7.594068412 7.597515842 227989364 fnr Stress Oxygen stress Meiothermus silvanus DSM 9946 8.258099338 8.24515753 8.575392815 8.066257796 7.98309057 7.882531966 7.618666332 7.563416097 7.69936781 7.64289348 7.540043472 8.073563698 21241807 phoB Stress Phosphate limitation Xanthomonas axonopodis pv. citri str. 306 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas axonopodis; 8.35698815 8.227061734 8.2780372 8.341579249 8.176143247 8.091605668 8.332259204 8.114373013 8.178276687 7.84492856 8.006564868 7.871050834 225542840 B_lactamase_C Antibiotic resistance Beta-lactamases Enterobacter cloacae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 9.086765168 8.95206472 9.07037587 8.58435501 8.39565424 8.667182507 8.732512312 8.514688682 8.952701992 8.695608627 8.8696763 8.78622827 33391459 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.388388309 8.315880942 8.193275372 8.166772107 8.135500282 7.838867193 7.871431477 8.055312673 7.947919515 7.828446774 7.567189181 239910697 pstB Stress Phosphate limitation Thermococcus gammatolerans EJ3 9.003888328 8.976717892 9.037930306 8.438385806 8.228869122 8.258194817 8.224967581 8.021448908 8.242970607 8.199296451 7.975938959 8.40978422 50123356 gyrB other category gyrB Erwinia carotovora subsp. atroseptica SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 9.886573556 9.682738458 9.981532628 8.961805193 9.180362884 9.262732375 9.32215562 9.319424651 9.354135629 9.086719689 9.383416021 9.254411242 269923114 B_lactamase_A Antibiotic resistance Beta-lactamases Brevundimonas subvibrioides ATCC 15264 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas;species:Brevundimonas subvibrioides; 9.092097946 9.050031634 9.100987618 8.912997021 8.972788007 9.009645144 8.487187312 9.118007008 8.598377912 9.142313775 9.379062479 8.770748033 254589929 sigma_70 Stress Sigma factors Neorickettsia risticii str. Illinois superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales;family:Anaplasmataceae;genus:Neorickettsia;species:Neorickettsia risticii; 9.609347716 9.551143254 8.523871656 8.318563751 8.370972466 8.627436418 7.739803247 116743200 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9.104962531 9.019571806 8.829626371 9.282900154 9.253534806 9.273841088 9.27414643 9.974937108 9.003016241 9.709357587 9.674300748 9.712888982 46199494 pcc Carbon cycling Carbon fixation Thermus thermophilus HB27 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 8.944526313 8.889159421 8.981223034 8.790161976 8.711241919 8.699445352 8.289915814 8.77633372 8.71784781 8.574850832 8.456847705 8.8706002 84499194 linB Organic Remediation Pesticides related compound Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 8.905394024 9.16254421 9.059096809 8.61608518 8.443454558 8.716517374 8.904576981 8.453228894 9.242096632 8.419940666 8.329383395 8.46874998 78093524 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.108006501 9.05509096 8.819812456 8.332875343 7.942523907 8.504718922 8.682146668 8.400785747 8.669469869 8.440913158 8.474178727 8.626344818 167654940 Al Metal Resistance Aluminum Anaerostipes caccae DSM 14662 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Anaerostipes;species:Anaerostipes caccae; 8.911443299 8.762742888 9.044724223 8.041841752 8.178072337 8.633591813 8.956097092 8.168690389 9.143528822 8.616049219 8.708682607 8.621598391 226182894 ureC Nitrogen Ammonification Rhodococcus erythropolis PR4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 8.745363163 8.569738015 8.952003318 8.586188225 8.391021535 8.267227577 8.465831143 8.845362875 8.483124701 8.681349571 8.618188616 8.686311127 86361228 fnr Stress Oxygen stress Rhizobium etli CFN 42 8.224707537 8.253090308 8.230858432 7.734141079 7.798457678 8.179125935 8.37398749 7.893971643 8.456519734 7.825745267 7.889700961 8.125030073 99083255 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.371353956 8.319274195 8.42714075 7.939699641 7.876640549 7.865138233 7.802565622 7.876012059 8.051824796 7.856912015 7.818657897 8.140985365 57016642 ppx Phosphorus Phosphorus utilization Campylobacter upsaliensis RM3195 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter upsaliensis; 7.935074842 7.833824391 7.529140682 7.516325563 7.194426761 7.245910951 7.291058921 7.611682241 7.153692754 7.173269799 7.308635372 163857729 alkK Organic Remediation Others Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 8.265042228 8.404357602 8.179633487 7.80173612 7.49604036 7.805202411 8.194330092 7.851902016 8.001965738 7.490167851 7.01592718 7.497105473 39573892 katE Stress Oxygen stress Bdellovibrio bacteriovorus HD100 9.012689259 8.800191765 8.906761997 8.20824149 8.136533821 8.14800046 7.932572581 7.709047847 8.419291095 7.928468487 8.081632678 8.544769754 227821785 SMR_antibiotics Antibiotic resistance transporter Rhizobium sp. NGR234 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 9.439511244 9.402466271 9.214803467 8.865939516 8.830549862 8.894558982 8.951052598 8.531186268 9.048215568 8.762394916 8.844977699 8.613537978 237808376 ureC Nitrogen Ammonification Tolumonas auensis DSM 9187 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Tolumonas;species:Tolumonas auensis; 8.755623636 8.736849681 8.849277719 8.360749642 7.995586462 8.083621616 7.661325619 7.712604136 8.055169149 7.826929192 7.971317249 8.409051201 255062119 ahpC Stress Oxygen stress Nitrosomonas sp. AL212 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 9.047321837 8.983435593 9.207012232 8.536903439 8.477490446 8.326972121 8.290949033 8.100240868 8.171098295 8.227615148 8.096670228 8.620212253 4249601 ureC Nitrogen Ammonification Actinomyces naeslundii superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces; 8.537778921 8.524669927 8.803794354 8.116946587 8.248083376 8.191198942 8.224593758 8.093697002 8.15108474 8.227216532 8.23415197 262261664 pstB Stress Phosphate limitation Streptococcus sp. 2_1_36FAA 7.998538907 8.113808655 7.297624126 7.27538529 7.350058321 6.757878565 6.868986248 7.285069762 260424676 cydB Stress Oxygen limitation Dialister invisus DSM 15470 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Dialister;species:Dialister invisus; 8.352976622 8.394659458 8.654521966 7.897337421 8.078323709 7.975464067 8.112367056 8.43804697 8.437211401 8.218903071 8.218995738 8.290260159 197626783 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 8.448994252 8.652003457 8.817517994 8.311437739 8.08199586 7.729119018 7.937435305 7.905131287 7.975861404 149186547 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Erythrobacter sp. SD-21 9.568334365 9.450081344 8.727555487 9.140373793 9.020068922 8.780960673 8.719128922 9.335871088 8.635442892 8.797151292 8.817856197 8.792346284 148259074 acpA_III Bioleaching other category Acidiphilium cryptum JF-5 9.103131705 9.348573525 9.084073507 8.200892879 8.71806975 8.678613756 8.968089093 8.045823196 8.963721226 8.344079835 8.470471152 8.621002687 62423337 trzN Organic Remediation Herbicides related compound Brevibacterium linens BL2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium linens; 8.706468043 8.192499531 8.251395246 8.381695738 8.238153947 8.558148862 8.736454356 8.702541605 8.687407708 8.823450088 8.81717649 222055632 cmuA Organic Remediation Chlorinated solvents Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.23675709 8.355056988 8.653125959 7.787273719 7.546150611 7.804258187 7.809413135 7.591228583 8.147551955 7.609198339 7.454236345 7.982118516 90422410 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.715181915 9.713077475 9.896745064 9.116864753 9.309446575 9.089243738 9.37079208 9.049981879 9.341548993 9.334676083 9.450483562 8.949823701 34102245 pstC Stress Phosphate limitation Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 8.177656087 8.049767817 7.922564962 7.720279842 7.77824472 8.083292464 7.629414151 8.185686695 7.068016959 7.47152469 7.379194682 73763116 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.818690931 8.646604023 8.728240401 8.437855056 8.324079437 8.348116791 7.920479703 7.938072701 8.283568962 8.043148945 8.138070572 8.331338852 222443503 glnR Stress Nitrogen limitation Staphylococcus capitis SK14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus capitis; 8.067702559 7.891174873 8.180407856 7.253893753 6.736610816 7.310380999 7.01985384 7.344417539 83816198 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Salinibacter ruber DSM 13855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 9.228675367 8.741919271 8.380838535 9.185242957 9.269369548 9.268310207 8.876182926 9.168266883 8.601784607 9.236514636 9.467739866 9.206522029 62529086 nifH Nitrogen Nitrogen fixation gamma Proteobacterium BAL286 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.645098012 8.750554468 8.906362387 8.465850137 8.406799655 8.172729485 7.827643249 7.862190512 7.846644635 7.773410374 8.331040794 83414383 gdh Nitrogen Ammonification Streptococcus anginosus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 8.660971595 8.435557643 8.927414618 8.449052297 8.315548269 8.352996132 8.351043627 8.295764762 8.354416495 8.367437029 8.400713491 8.705447179 224821963 glnA Stress Nitrogen limitation Natrialba magadii ATCC 43099 8.575574171 8.09331691 8.295435913 8.29832148 8.452454721 8.283730943 8.15267313 8.625768724 8.359031466 8.508846436 8.095744714 8.348641793 209549596 nitA Organic Remediation Aromatics Other aromatics Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.16586725 8.188609614 8.138084923 7.976678854 8.128787013 8.09885212 8.040577079 8.320416518 8.415988728 8.077479927 8.13660322 8.047054069 224477742 opuE Stress Osmotic stress Staphylococcus carnosus subsp. carnosus TM300 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus carnosus; 9.391314263 9.258701106 9.338276161 8.666479268 8.769085932 8.738753756 8.225268721 8.362240479 8.431209265 8.298007406 8.603042495 73763060 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.194467042 8.196452753 8.041732615 8.192412481 8.350277812 8.320041927 8.489915582 8.381434174 8.488370152 8.562006368 8.720882836 160943694 mer Metal Resistance Mercury Faecalibacterium prausnitzii M21/2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Faecalibacterium;species:Faecalibacterium prausnitzii; 7.894128196 8.017263569 7.99093049 7.652706714 7.67962794 8.183384756 8.087985354 8.27905823 7.999484581 7.618426678 7.490648398 209500592 THL Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.158242866 8.395728109 8.245199581 7.8437846 7.661292378 7.537850654 7.797207098 7.788991091 7.71690303 209530459 katE Stress Oxygen stress Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 8.174479323 7.842776477 7.611652341 7.574481419 8.109290659 8.00477858 7.996155953 7.852685384 7.966521117 74056985 mer Metal Resistance Mercury Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 8.077040113 8.433355803 8.552523703 7.970186312 7.980579488 8.450538514 8.682345741 8.018158597 8.632572193 7.977666232 8.158941569 8.189589117 148260075 cbb Bioleaching Carbon fixation Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 9.031864068 9.118459745 9.194699329 9.252953539 9.276050022 9.128857652 9.361029598 9.346519207 9.328197476 9.634659845 9.44102712 9.214853238 86747621 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.858366849 9.671858943 9.705126441 9.417006166 9.275042388 8.830166693 9.40547435 8.872053878 197118452 nrfA Nitrogen Dissimilatory N reduction Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 8.062752179 7.849557351 8.255112066 7.977932114 7.88333701 7.641700379 7.729733783 7.932696745 7.835283171 7.902298914 7.622047208 7.971604278 260087722 oxyR Stress Oxygen stress Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 8.919316949 8.682668744 8.609290421 8.686143934 8.588691117 8.356192671 8.450575045 8.62241338 8.432325649 8.733923883 8.851289441 8.492268598 54026524 narJ Stress Oxygen limitation Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 8.61245229 8.534712288 8.283981577 8.553858796 8.722384259 8.791017658 8.953863426 8.663254893 8.215836189 8.391739863 8.651073568 8.029105629 118656554 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 10.39967971 10.12329618 10.04091567 9.668973852 9.513407887 9.522382535 9.567176686 9.332183759 9.378006662 9.588701143 9.82861264 9.60004776 222147389 pstB Stress Phosphate limitation Agrobacterium vitis S4 8.453969014 8.33618323 8.256879498 7.735411809 7.741230384 7.485338318 7.563709252 7.700742332 8.327996912 7.730209513 7.595845276 7.732971962 269098644 pstB Stress Phosphate limitation Sanguibacter keddieii DSM 10542 9.407268782 9.348941228 9.374052782 8.800875265 8.783986268 8.754175126 8.594112806 8.725539119 8.730873429 8.683127478 8.807159967 8.966139408 113529725 phn Organic Remediation Herbicides related compound Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 10.0239972 9.552336663 9.426643318 10.1102746 9.668213014 8.682997185 9.918962741 9.942528783 10.27638808 9.665433045 9.667408167 9.218895122 219848346 clpC Stress Protein stress Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 8.738628436 8.434692164 8.427452125 8.090201859 8.260236056 7.870048504 7.829513166 8.253566468 7.855365914 8.004924543 8.133630025 25028538 gdh Nitrogen Ammonification Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 8.390389061 8.070998546 8.071660147 8.388549636 8.38326798 8.094939639 8.238899807 8.343330404 8.079061795 8.55883948 8.00064129 255336161 fnr Stress Oxygen stress Hyphomicrobium denitrificans ATCC 51888 9.049452428 9.240917639 9.100076125 8.539700604 8.568360279 9.040852821 9.330187322 8.862835149 9.017156385 8.757047569 8.905815935 9.031462013 220718746 ALN Organic Remediation Others Variovorax paradoxus S110 8.602127288 8.889131886 8.833282837 9.088576206 117928091 nitA Organic Remediation Aromatics Other aromatics Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 9.193529413 9.125195747 9.211488272 8.833728046 8.692951753 8.57807857 8.52553434 8.354622525 8.603406346 8.595366913 8.690688819 8.891854611 85773376 ChrA Metal Resistance Chromium Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 8.815157117 8.880448626 8.792946225 8.482512021 8.059114729 8.556434302 8.937090004 8.29550095 8.80835694 8.521256736 8.519775846 8.196499785 171915642 grpE Stress Heat shock Verrucomicrobium spinosum DSM 4136 8.501960095 8.952982813 8.857429466 8.041182593 7.974790344 8.302665584 8.98334776 8.710391148 8.951484716 8.230431505 8.17432873 8.191512971 24985958 iro virulence Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 9.749131657 9.592269805 9.886409987 9.047152123 8.966946262 9.00456842 8.695758891 8.735288645 8.675685807 8.905510571 9.086257639 9.236896868 121305355 nrfA Nitrogen Dissimilatory N reduction Thermosinus carboxydivorans Nor1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Thermosinus;species:Thermosinus carboxydivorans; 8.61863504 8.474545522 8.515561389 8.174536274 8.144608252 8.072127938 7.952783866 8.190901236 8.175652956 7.849358298 7.933647455 260061876 obgE Stress Radiation stress Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 8.625446034 8.337154419 8.712743956 7.955901147 8.033455328 7.953338977 7.910891769 7.679532757 8.050714387 7.660962677 7.680726896 8.025904675 157680436 phoA Stress Phosphate limitation Bacillus pumilus SAFR-032 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pumilus; 8.357497746 8.166097037 8.247384461 7.425428525 7.662951397 7.711332564 7.517926014 7.325383303 7.938650827 7.879275741 7.803633283 7.73748086 46448111 ahpF Stress Oxygen stress Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 8.493078334 8.438599177 8.538583248 8.370816328 8.362699409 8.091106588 7.968043147 8.484224109 8.33660904 8.380469899 8.37293913 8.249543318 158108874 tfdA Organic Remediation Aromatics Chlorinated aromatics Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.788223559 8.662189807 8.783983831 8.812764921 8.702572925 8.561970935 8.75164687 9.191944574 8.842757476 9.098442216 8.536152318 8.938012298 186463510 CadA Metal Resistance Cadmium Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 8.77453469 8.697187474 8.755363427 8.08954963 7.987096848 7.847629382 7.86490933 7.741195466 7.625248129 8.037063003 7.753789839 8.097159491 116013320 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.914547142 8.909925981 9.056300369 8.424362646 8.320706741 8.281988843 8.224141102 8.275464742 8.309004201 8.257855254 7.95763024 8.473500653 212709122 atzA Organic Remediation Herbicides related compound Providencia alcalifaciens DSM 30120 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 9.267773794 9.282083938 9.546567294 8.884459811 8.997350365 8.95876137 8.69624826 9.137369129 8.667267235 9.106156911 9.184912079 9.259062236 81429037 CopA Metal Resistance Copper Lactobacillus sakei subsp. sakei 23K superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus sakei; 9.767578317 9.640471187 9.869091901 9.059482961 8.915505374 8.880731164 8.831518703 8.651176578 8.585749661 8.775794102 8.849203255 9.105714694 189201882 ara_fungi Carbon cycling Carbon degradation Hemicellulose Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 8.978049904 8.588287534 8.805879456 8.14275845 8.127630778 8.170871354 8.000442491 7.752076517 8.442548401 7.98117701 7.860603202 8.228052987 197086979 CopA Metal Resistance Copper Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 9.077240908 9.20263131 9.188424429 8.59427209 8.878252962 8.635591042 8.626803645 9.053772705 8.655064021 9.014265539 8.844732353 8.770695523 219676305 alkK Organic Remediation Others gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.803608841 8.954244901 8.948113182 8.335325524 7.915740893 8.141831753 8.55021019 8.040090645 8.403495613 8.488826225 8.450782954 8.440414342 222354272 hao Nitrogen Nitrification uncultured bacterium superkingdom:Bacteria; 8.742587757 8.565491472 8.999718115 8.243623993 8.083673117 8.044798483 7.728772688 7.936118514 8.163348329 8.093864047 8.022730596 8.251295062 188583265 ArsC Metal Resistance Arsenic Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 9.076252768 9.098878157 8.838860626 8.830729558 9.000903505 9.188362156 9.486294514 9.345294049 9.182007428 9.509087135 9.317250399 9.457360245 225167431 nrfA Nitrogen Dissimilatory N reduction Dethiobacter alkaliphilus AHT 1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Syntrophomonadaceae;genus:Dethiobacter;species:Dethiobacter alkaliphilus; 8.397533842 8.347135363 8.384886343 7.730359781 8.006220746 7.494724357 7.51886752 6.908301555 7.679895406 7.456527092 7.596354283 146401104 sulfoxide_reductase Bioleaching Sulphur Acidiphilium cryptum JF-5 8.95192493 8.527669832 8.752107595 8.020954269 7.912679108 7.990684613 7.00672987 6.937771139 7.822651878 7.853817402 7.781045196 7.989061992 228695252 SMR_antibiotics Antibiotic resistance transporter Bacillus cereus Rock3-44 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 8.274547206 8.057458651 7.62679937 7.680165443 7.790898903 7.995398548 7.849048116 7.991607284 7.457311735 7.314106695 84683883 proO Organic Remediation Aromatics Other aromatics Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.675236326 8.95709949 8.486019153 8.291073226 8.598595751 8.803073301 8.939060599 8.748128224 8.605450922 9.176448639 9.100757545 9.204611312 113129062 endochitinase Carbon cycling Carbon degradation Chitin Hypocrea virens superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 8.716124284 8.769900268 8.299177179 8.102072651 8.248330203 8.412432841 8.194361336 8.630738849 7.966201837 8.172150394 7.947720836 146304202 ferredoxin_oxidoreductase Bioleaching Electron transport Metallosphaera sedula DSM 5348 9.806077015 9.797369911 9.861689802 9.22331375 8.996639666 8.986465024 8.860158726 8.826405616 8.723788709 8.9054031 8.872832668 9.363272324 84043105 Catechol Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 8.303040538 8.405423489 8.289010315 7.863054128 7.767204671 8.260519957 8.611441953 7.902997731 7.843877857 7.892393885 7.733275391 261409551 clpC Stress Protein stress Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.590286478 8.566038585 8.44947003 8.12576528 8.332497577 7.952983815 8.093894918 8.234689999 8.619404068 8.440432141 8.411434184 8.462673853 169637693 cap virulence capsule Candidatus Desulforudis audaxviator MP104C superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Candidatus Desulforudis;species:Candidatus Desulforudis audaxviator; 9.246500393 9.25499583 9.420588204 8.933096463 9.033072245 9.00357063 9.26457514 9.304903242 8.881270853 9.396298689 9.358557401 9.227552862 269922901 sigma_32 Stress Sigma factors Brevundimonas subvibrioides ATCC 15264 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas;species:Brevundimonas subvibrioides; 8.695423609 8.953353562 7.837249868 7.883040005 8.445509681 8.508813908 9.066038806 224027949 AprA Sulphur adenylylsulfate reductase uncultured gamma proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.512875198 8.119945475 8.377884592 7.902249793 8.345720574 8.253672238 8.046355627 8.048962114 7.442754093 7.890022387 67522877 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.472715618 7.47580065 7.981310069 7.34867049 7.86968925 7.867399128 7.8102929 7.798110775 218756938 pstB Stress Phosphate limitation Desulfovibrio vulgaris str. 'Miyazaki F' 8.477730959 8.537292174 8.417843998 8.490694654 8.422554371 8.536494763 8.503268243 118068179 TehB Metal Resistance Tellurium Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 8.153869576 8.482215749 8.221111857 7.841610737 7.901435889 8.555973068 8.817424013 8.259233928 8.633925955 8.529794619 8.06354283 183219066 ppx Phosphorus Phosphorus utilization Bifidobacterium animalis subsp. lactis HN019 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 8.794232555 8.542028517 8.588083846 8.441150072 7.97483749 8.252954839 8.186881519 8.137592288 8.166443632 8.419522021 7.95335702 217966630 ChrA Metal Resistance Chromium Dictyoglomus turgidum DSM 6724 superkingdom:Bacteria;phylum:Dictyoglomi;class:Dictyoglomia;order:Dictyoglomales;family:Dictyoglomaceae;genus:Dictyoglomus;species:Dictyoglomus turgidum; 8.135939921 8.081405775 7.892589707 7.976128384 7.788776392 7.736400214 8.32834918 8.14867332 8.097815184 8.175340951 8.107604703 134101528 dnaK Stress Heat shock Saccharopolyspora erythraea NRRL 2338 8.755262775 8.471169453 8.749305601 8.882421973 8.853948631 8.710055743 8.601983957 8.820546858 8.95328827 8.645331395 8.753870064 8.251490818 140846358 ChrA Metal Resistance Chromium Corynebacterium glutamicum R superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 8.814676393 8.668429907 8.554043479 7.716458141 8.230973674 8.488496242 8.682910593 8.417183511 8.59651408 8.157421925 8.354147265 8.342721865 162147081 silC Metal Resistance Silver Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 8.730885659 8.543372179 8.687128612 8.500879991 8.709062054 8.141512031 8.693957387 8.402016714 8.416309845 8.775036314 8.490538402 242799963 amyA Carbon cycling Carbon degradation Starch Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 8.375416953 8.15256298 8.764275602 7.976222641 7.826336337 7.761213688 7.687058479 7.915586671 7.859708727 8.132732048 7.511576238 7.98714877 225874554 pstB Stress Phosphate limitation Acidobacterium capsulatum ATCC 51196 8.898375369 8.621823492 8.796602392 8.860765943 8.837567189 8.854576467 8.89985655 9.282922786 8.585826556 9.108532833 9.24005972 8.747565491 88863487 nbaC Organic Remediation Aromatics Nitoaromatics Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 9.676431501 9.651376223 9.608462934 9.050226748 9.148806784 9.371182023 9.308523183 9.59384776 9.103122431 9.416656823 9.46981496 9.812114022 74057033 4Fe_4S_ferredoxin Bioleaching Electron transport Thiobacillus denitrificans ATCC 25259 8.696348104 8.318093077 7.614943155 7.748945977 7.966983255 7.956439027 7.495566783 7.5560477 7.545409277 8.043566065 118749674 nagK Organic Remediation Aromatics Aromatic carboxylic acid Marinomonas sp. MWYL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 8.934058755 8.662154732 8.842597312 8.167414218 8.06996673 7.940070589 7.903235428 7.746623773 8.149720661 8.141575896 7.874621334 8.203123789 84704977 sigma_70 Stress Sigma factors Parvularcula bermudensis HTCC2503 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 8.088717986 7.878855128 8.146856475 7.882706966 7.848765773 7.579213996 7.583233347 7.831677909 8.158753527 7.881339046 7.710955522 7.82573708 121594055 pimF Organic Remediation Aromatics Aromatic carboxylic acid Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 7.619756379 7.534803138 7.524502969 7.061936533 7.695810828 7.921875741 7.612574938 7.713816927 7.628757914 171317064 CopA Metal Resistance Copper Burkholderia ambifaria MEX-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 8.521504998 7.796427567 8.13254969 8.239713094 7.921416982 7.7560532 8.014429539 7.792001157 7.997410988 8.035718951 7.950786319 148255462 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 9.314907908 8.93889609 8.729388673 9.318005522 9.39320881 9.395469166 9.10707235 9.547192215 8.842139269 9.667046204 9.652499698 9.548685435 254970800 sox Sulphur Sulphur oxidation Acidithiobacillus caldus ATCC 51756 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 8.712402883 8.559259381 8.236215427 8.091666136 7.583774663 7.980722719 8.168614039 7.812953668 8.489812119 7.868557591 7.744411804 7.911444404 171915734 type_III_secretion virulence secretion Verrucomicrobium spinosum DSM 4136 9.144786485 9.123550079 9.138378813 8.521976501 8.725831894 8.660101068 8.873708834 9.344271338 8.862133637 9.392489709 9.42942423 9.042156231 154298680 nagG Organic Remediation Aromatics Aromatic carboxylic acid Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 8.532831982 8.413737823 8.197202407 8.038850642 8.721311439 8.92944316 8.662017709 8.828893388 8.566870052 8.361106363 8.982890529 8.604152549 118765903 silP Metal Resistance Silver Bifidobacterium adolescentis ATCC 15703 8.340260405 8.221791871 8.509095478 8.272092479 8.243470373 8.360578772 7.89924781 8.206410143 8.016567041 8.209962175 8.27198233 7.947167394 13259303 mcrA Carbon cycling Methane Methane production uncultured methanogen RS-ME32 superkingdom:Archaea;phylum:Euryarchaeota; 9.057906674 8.988171822 9.071172613 8.138607246 8.076566318 8.551853358 8.687692096 8.012069614 8.383211564 8.268340742 8.165937791 8.25844433 83853550 pimF Organic Remediation Aromatics Aromatic carboxylic acid Oceanicaulis alexandrii HTCC2633 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis;species:Oceanicaulis alexandrii; 8.580485038 8.615701107 8.574520762 8.220432326 8.554825292 8.524723525 8.345292541 8.838258789 8.641712006 8.656305864 8.621542242 8.062929162 77462527 AceB Carbon cycling Carbon degradation others Rhodobacter sphaeroides 2.4.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 8.482565159 8.000957505 8.211818133 7.262784151 7.364558711 7.184656416 7.002376998 7.723240025 7.048170658 7.165552837 7.32005377 114315522 gyrB other category gyrB Granulibacter bethesdensis CGDNIH1 8.269967827 8.246168097 7.942759521 7.880035092 8.216635379 7.760875168 7.614914897 8.089918582 7.77511453 7.975761958 228308643 cydA Stress Oxygen limitation Porphyromonas uenonis 60-3 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas;species:Porphyromonas uenonis; 7.290257894 7.191934197 7.483091136 6.917112257 7.571508244 7.497655807 7.264734852 7.158957954 7.512963838 91684674 BchY other category chlorophyllide reductase Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.061644575 8.0681549 7.792727951 7.732750256 7.707194098 7.352906279 7.701585291 8.039650581 7.990216313 7.512609824 7.968221194 4454060 norB Nitrogen Denitrification Bradyrhizobium japonicum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.503145854 8.582623595 8.59660832 8.090819866 8.190871303 8.338004334 8.241884773 7.940100651 8.753466381 8.127052878 8.014921286 8.131294988 109639784 tutFDG Organic Remediation Aromatics BTEX and related aromatics Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 8.945025724 8.820165081 8.990258935 8.181336091 8.210557338 8.1545889 8.237895091 8.006352183 8.397642559 8.120388555 7.943749345 8.271980867 222081597 TerC Metal Resistance Tellurium Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.661607316 8.623550258 8.383113414 8.558197947 8.838008987 8.864140243 9.096406231 8.816362503 8.447912081 8.691279835 8.196656389 14715450 xylG Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 11.36850486 11.24471149 11.22791201 10.49536812 10.6487656 10.66253872 10.65277177 10.0810111 10.96640943 10.77329896 10.96861344 10.90955958 20804137 phn Organic Remediation Herbicides related compound Mesorhizobium loti superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium; 8.4218568 7.964327943 7.791539322 8.283221577 8.276986234 8.24838039 8.05829983 7.579528415 7.932798521 124495181 gyrB other category gyrB Bacillus coagulans 36D1 8.510159561 8.606010946 8.843698934 8.033470986 7.8850707 7.845754576 7.706607791 7.699385156 7.847002764 7.709540478 7.604022798 8.027087486 160917795 narG Nitrogen Denitrification uncultured bacterium 9.571175661 9.19880591 9.259709283 8.836884596 8.868804299 8.997825616 9.186066463 8.919661932 9.09058108 218294802 fnr Stress Oxygen stress Thermus aquaticus Y51MC23 9.344812177 9.260575933 9.321022971 8.788855644 8.681461152 8.575105859 8.558377688 8.619265304 8.487397003 8.720749003 8.73858816 8.83282903 56798449 catechol_B Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 9.083794633 9.04460374 9.137376578 8.473908777 8.451397336 8.534757662 8.39024295 8.273387189 8.579348003 8.222992024 8.162561602 8.609624168 144899226 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Magnetospirillum gryphiswaldense MSR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 9.498505585 9.594552292 9.76766048 9.822292661 9.640780466 9.307552667 9.574532514 9.991973496 9.697182413 9.734186996 9.541854666 9.947834661 226092828 endochitinase Carbon cycling Carbon degradation Chitin Brevibacillus brevis NBRC 100599 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus brevis; 8.661169883 8.094740518 8.014947255 8.46196007 8.371146537 8.261828816 8.304224464 8.343287317 8.481058924 8.444827415 8.424451433 8.200246488 158309671 arcB Stress Oxygen limitation Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;genus:Acaryochloris;species:Acaryochloris marina; 8.589045414 8.690227277 8.544079171 8.356568105 8.23966709 8.107394714 8.265473373 8.621429577 8.303406383 8.410817552 8.241387308 8.350309655 163667975 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 8.98079016 8.581157442 8.347197514 7.855066178 8.07396929 8.236274671 7.920757833 8.399753889 8.213414794 8.001443054 1322077 phenol_oxidase Carbon cycling Carbon degradation Lignin Trametes villosa superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 8.446815284 8.34480025 7.976422351 8.256296865 8.233124158 8.235856641 8.295379605 8.210449781 8.197078028 189198075 amyA Carbon cycling Carbon degradation Starch Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 8.307081719 7.926870982 8.317877823 7.294537532 7.523807478 7.80473777 6.827703609 7.848073581 7.36611717 7.391845392 7.772561203 91777385 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 8.424611821 8.185215926 8.570958378 8.338532968 8.274017752 8.245644097 8.091524858 8.451100075 8.144968056 8.362974566 8.365936303 8.14930149 83017270 gyrB other category gyrB Microbulbifer sp. MBIC03330 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Microbulbifer; 8.854368284 8.592949168 8.688365455 8.117763432 8.030174592 8.180844757 7.613007954 7.509405608 8.33701541 7.744455607 7.646004575 8.116547648 187477094 ArsC Metal Resistance Arsenic Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 8.69685621 8.678520114 8.8022137 8.09917012 8.324408463 7.444886887 8.215613973 8.235074152 7.900763352 8.290607478 54026987 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 8.670370757 8.604148309 8.557654633 8.037300514 8.171612642 8.089425735 8.17111656 7.569066629 7.787252173 7.610633812 8.046183975 2983586 CueO Metal Resistance Copper Aquifex aeolicus VF5 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Aquifex;species:Aquifex aeolicus; 8.433533576 8.303860117 8.113783992 7.939009025 7.700373698 7.642690146 7.442614874 7.295749794 7.971563242 7.514011602 7.461240048 7.711391859 160917536 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.505840649 8.4759336 8.502344731 8.579504085 8.446919927 8.310890144 8.610996416 8.630400418 8.668298207 8.667614358 8.520066566 8.42576316 83316828 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.247030086 8.292048511 8.002464843 7.991271235 7.704379372 7.969950871 7.924677456 8.1563288 8.108292595 8.046647361 8.25841168 157374665 cytochrome Energy process Energy process Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 8.14076034 8.270612892 7.600137588 7.89381257 7.302975965 7.603145224 7.879644652 7.890319254 7.963734793 7.652402777 7.65186707 190685350 ChrA Metal Resistance Chromium Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 9.863848145 9.60745537 9.277400382 9.961011115 9.202199872 10.08742627 9.34787592 83972352 nosZ Nitrogen Denitrification uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 8.335139667 8.346336687 7.833401747 7.699262478 7.683753439 7.715924903 8.040032104 8.031315613 7.737452365 7.728887103 192803550 ara Carbon cycling Carbon degradation Hemicellulose Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.78289882 8.854034914 8.669141462 8.455204159 8.16571957 8.285359181 7.980551031 8.650702713 8.550264551 8.47678418 8.23621915 238750476 proV Stress Osmotic stress Yersinia rohdei ATCC 43380 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia rohdei; 9.217684778 9.005830875 9.022402178 8.47400547 8.606502226 8.110209584 8.068981094 8.446092111 8.633295187 8.555558302 60475956 rubisco Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.610497917 8.560547738 8.619693905 8.058272986 8.295995216 8.510626492 8.854244579 8.354903465 8.938732255 8.492914224 8.676743969 8.725709273 148518037 vdh Carbon cycling Carbon degradation Others Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 10.06945228 9.760850401 9.918856434 9.2077116 9.290099903 9.148240738 9.376119948 8.884234069 9.512894209 9.131493095 9.269702401 9.141009434 126359195 nagG Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.658413469 7.72033959 7.776491746 7.911471165 8.213558985 8.279527151 8.012361742 8.049280075 8.069351343 219670696 dmsA Organic Remediation Others Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 9.088340771 9.081575764 9.238204636 8.721681687 8.441487503 8.476231796 8.244592681 8.284831976 8.334626068 8.323115671 8.526941359 89361802 ppx Phosphorus Phosphorus utilization Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.922954428 8.994454905 8.844882569 9.782950172 9.757950993 9.232156375 9.838371606 9.648029859 9.335862723 9.594970441 9.600739669 8.877386594 125624257 srt virulence surface protein Lactococcus lactis subsp. cremoris MG1363 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Lactococcus;species:Lactococcus lactis; 8.780850731 8.814419428 8.90994472 8.178708582 8.18740378 8.284005382 7.925883981 7.52505506 8.233838825 7.93498575 7.819393147 8.151286556 261249777 dsrA Sulphur sulfite reductase uncultured bacterium 8.613184196 8.470412143 8.850502068 8.036257449 7.999176239 7.981371508 7.410132311 7.057221412 7.894371637 7.806167351 7.795373009 7.939475616 227550311 pectinase Carbon cycling Carbon degradation Pectin Enterococcus faecium TX1330 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus faecium; 8.570698891 8.440822303 8.64353168 8.261693451 7.956911654 7.70404615 7.942456569 8.249010957 7.130619135 8.050498533 7.964239945 8.181238694 192897622 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 8.02107489 8.068895684 7.387603809 7.21301006 7.504843321 6.882834064 6.939414031 7.482302922 7.098525025 7.254569928 7.234988987 167728638 iro virulence Halobacterium salinarum R1 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halobacterium;species:Halobacterium salinarum; 9.630804983 9.665516564 9.7379487 9.29327304 9.323386419 9.399947527 9.853344374 9.361103192 9.633733786 9.251853377 9.043833855 194473842 holin_type_2 Bacteria phage LYSIS Morganella phage MmP1 order:Caudovirales;family:Podoviridae;genus:T7-like viruses; 8.703805159 8.508600648 8.596242512 8.585663403 8.359673614 8.127279337 8.218866033 8.199393876 7.976236768 8.035506436 8.142442305 113941017 ureC Nitrogen Ammonification Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 9.599107827 9.573293653 9.753752093 8.908765479 8.693317452 8.805138105 8.98553583 8.498504748 8.62788779 8.652625636 9.099327333 83954662 sox Sulphur Sulphur oxidation Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 8.590154339 8.693404752 8.413585901 8.07004835 8.29703586 8.19605007 8.235077971 8.112110928 8.121404959 8.189564505 8.11596059 8.390732114 29609361 fnr Stress Oxygen stress Streptomyces avermitilis MA-4680 9.069880979 8.743639349 9.150376158 8.699452598 8.861292072 9.056995029 9.331977723 8.8161481 9.329732776 9.014956718 8.904488881 8.999736556 66130215 lip Carbon cycling Carbon degradation Lignin Pleurotus pulmonarius superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pleurotaceae;genus:Pleurotus; 9.384173268 9.445394671 9.432080589 9.047618765 9.416358064 9.454791696 9.289403633 9.226314953 9.152556661 9.146235301 9.515297386 9.187893248 108766325 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 9.378189914 9.358870831 9.380708542 9.058256676 9.025123517 8.836503808 8.990371496 9.112211282 8.851850284 9.245669666 9.223882996 8.871924661 212635959 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 7.955261587 7.918594475 8.087014999 7.41767633 7.28480049 7.146400446 6.979271282 7.65315012 69286721 TerZ Metal Resistance Tellurium Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 7.950625274 8.207804174 7.050167024 7.018329887 6.906664496 7.258886043 6.990415718 7.006587001 7.121512474 69934127 CadA Metal Resistance Cadmium Paracoccus denitrificans PD1222 8.65866105 8.630789583 9.328230601 8.538660341 8.499701692 8.519183106 8.735683154 9.121723323 269957520 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Xylanimonas cellulosilytica DSM 15894 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Xylanimonas;species:Xylanimonas cellulosilytica; 9.305461895 9.366875865 9.587785373 8.987083253 8.814971869 8.674188044 8.746033646 8.900503699 9.016535472 9.023749614 8.997034737 9.224755686 240169152 sigma_24 Stress Sigma factors Mycobacterium kansasii ATCC 12478 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 8.769915466 9.126350152 8.972630648 8.047921589 8.445016501 8.372025444 8.473636942 8.786659766 8.247155658 8.42572013 113934743 silC Metal Resistance Silver Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.665644798 8.84656305 8.599666734 8.462897348 8.37439118 8.102169207 8.638073577 8.633279519 8.868081233 8.835818846 8.770146084 8.522499187 149375513 xylG Organic Remediation Aromatics Aromatic carboxylic acid Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 9.034310321 8.805647401 9.29598323 8.801131974 8.731414957 8.512905148 8.277288407 8.166985568 8.499226967 8.499329255 8.237633128 8.395910056 163258749 alkK Organic Remediation Others Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 8.6516903 8.600599095 8.368126811 8.479676793 8.819465769 8.629597865 8.760020829 8.750386418 8.689240593 8.873116279 9.042246132 8.771586781 217505795 gyrB other category gyrB Thauera sp. MZ1T superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 8.560165791 8.723163461 8.766785397 9.398487607 9.249104582 9.211742639 9.091345848 9.497803966 8.780086971 9.400893142 9.447393133 9.153433419 85087088 katE Stress Oxygen stress Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 9.047809621 9.087089986 9.144926244 8.996360236 8.832379412 8.414901363 9.069572529 8.701979192 9.102689213 8.757496145 161520827 atzC Organic Remediation Herbicides related compound Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 8.430042179 8.212515978 8.289911548 7.916098908 8.266656069 8.073903108 7.779431302 8.032487512 7.991922134 8.328599052 8.242199722 217186 xylA Carbon cycling Carbon degradation Hemicellulose Thermus thermophilus superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus; 8.500732795 8.325584534 8.849230368 8.331032246 8.225885883 8.173047963 7.931077475 7.851531585 8.256888516 8.015876934 8.155525662 8.306780453 212633612 pimF Organic Remediation Aromatics Aromatic carboxylic acid Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 8.368322565 8.54207465 8.429606515 7.808870622 8.13457824 8.446494374 8.500801639 8.03175625 8.393314257 8.2107621 8.433882476 8.338035139 78060921 atzC Organic Remediation Herbicides related compound Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.667976599 8.86142743 8.610275527 8.850198104 8.695144742 8.526100677 8.678286004 9.197007095 8.921047424 8.859986783 8.879101727 8.938873273 63255724 MFS_antibiotic Antibiotic resistance transporter Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 8.427204018 8.339166687 8.223741105 8.377222593 8.202661073 8.160980996 8.585076527 8.711474772 8.384384007 8.26273181 8.297069904 219867590 gyrB other category gyrB Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 8.136425305 8.361054013 8.541401431 8.03442478 8.060607221 8.234395143 8.187124003 8.222897921 8.556113759 8.179075547 8.113321296 7.835115168 89362129 rubisco Carbon cycling Carbon fixation Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.446616227 9.058411663 8.487719831 8.313534679 8.682420337 9.141800763 9.355191664 9.008355993 8.811827998 8.968931079 8.934555195 9.163096679 170777657 sigma_32 Stress Sigma factors Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 8.139805067 8.381312248 7.817751468 7.550053824 7.976071684 8.053077143 7.502565771 229489177 CDH Carbon cycling Carbon degradation Cellulose Rhodococcus erythropolis SK121 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 8.494500831 8.374742655 8.120493126 8.306564331 8.105394398 8.041368018 8.677951399 8.311457098 8.586181727 8.646426325 8.387000029 169239362 CMCI Organic Remediation Aromatics Other aromatics Mycobacterium abscessus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 9.611498946 9.243385134 9.550085643 9.174227837 9.178039679 9.208697534 9.181400613 9.246976456 8.828252563 8.96514416 9.030440427 9.165322225 163259256 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 8.092576493 8.04123474 7.275542296 7.318124031 7.722752182 7.701553583 6.773660106 8.089978724 7.287065873 7.203894885 7.530192963 93353557 phn Organic Remediation Herbicides related compound Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.518434285 8.488159585 8.673885251 8.51338556 8.201408587 8.127624232 8.418066761 8.168033976 8.242797765 8.182652956 7.952911405 148560412 Arylest Organic Remediation Aromatics Other aromatics Brucella ovis ATCC 25840 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Brucella;species:Brucella ovis; 8.072406866 7.902670372 7.515879513 7.255854303 7.284139654 7.121113719 6.986993005 7.592899781 7.354603712 7.214463417 7.304590266 62149186 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.296998614 8.185854354 8.30673765 8.176015015 8.190705422 8.15955566 8.101994497 8.268156815 8.296192955 8.25023958 8.223680833 8.220217563 219997277 CopA Metal Resistance Copper Thioalkalivibrio sp. HL-EbGR7 8.405528835 8.379739787 8.196327267 7.955068269 7.922348714 7.767322626 7.576195372 7.803763118 8.059574421 7.836635517 7.783377167 7.705623093 13423934 xylC Organic Remediation Aromatics BTEX and related aromatics Caulobacter crescentus CB15 8.715716511 8.466702335 8.506655792 8.076245171 8.158702316 8.052578425 7.954066119 8.091654335 8.000028263 8.156659212 8.13863766 154706990 MFS_antibiotic Antibiotic resistance transporter Coxiella burnetii Dugway 5J108-111 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Coxiellaceae;genus:Coxiella;species:Coxiella burnetii; 7.770576113 7.990244774 7.75872694 7.408639395 7.788101386 7.94377199 7.856040006 7.326861024 7.942681386 151280237 phoB Stress Phosphate limitation Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 9.181359417 9.023835051 8.462519731 7.620359744 8.504278776 8.813704946 8.000106745 8.809418964 8.037297939 8.338258279 7.989639689 214037088 gyrB other category gyrB marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.494113074 8.244358985 8.571712491 8.078647103 7.701334397 7.666720946 8.059488881 7.703749669 7.966650936 7.678749771 7.590204394 7.753303619 145572541 pstB Stress Phosphate limitation Pseudomonas stutzeri A1501 8.655389793 8.668650591 8.633433239 7.966788838 7.833576012 7.737117947 8.495627302 7.941324051 7.791421486 8.261672175 8.021428859 221203922 iro virulence Burkholderia multivorans CGD2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 9.12318365 8.395941695 8.156853742 9.255433712 9.10959495 8.980386154 9.012711948 8.965858798 8.850317086 8.877923893 8.863242209 8.444492555 154159165 catB Organic Remediation Aromatics BTEX and related aromatics Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.480863571 8.796026094 8.465303988 8.032752315 8.386465784 8.13787711 8.729957682 8.4839881 8.26606132 8.023445473 8.071661921 71361353 amoA Nitrogen Nitrification superkingdom:Bacteria; 9.060679917 9.240711203 9.068533371 8.385223827 8.480603811 8.492809328 8.738361009 7.929823703 8.550214014 8.325659455 8.574816177 8.613599611 148571794 pimF Organic Remediation Aromatics Aromatic carboxylic acid Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 8.428455845 8.554388836 8.397729085 8.236992081 7.954837526 8.323579458 8.318812174 8.585676728 8.493351146 8.592737412 7.82722763 207738888 phenol_oxidase Carbon cycling Carbon degradation Lignin Ralstonia solanacearum IPO1609 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 8.464943593 8.24788545 8.199177129 7.801170716 7.907570991 7.835987879 7.976246584 7.883699567 8.017657377 8.137172847 8.30429494 261375377 AceA Carbon cycling Carbon degradation others Geobacillus sp. Y412MC61 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.517747989 8.543845965 8.559261579 8.038463924 7.830954723 7.836689301 7.839166409 7.614363822 8.139254556 8.008287285 7.984364594 7.880776203 110340621 SMR_antibiotics Antibiotic resistance transporter Chlorobium ferrooxidans DSM 13031 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium ferrooxidans; 8.759466788 8.770023573 8.69095156 8.709281559 8.776249012 8.641131741 8.495601472 8.842069033 8.462694536 8.744712117 8.79164494 8.493872804 108467436 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 8.521138029 8.655844204 8.645859573 8.160439016 8.397048913 8.691521237 9.074314675 9.348280941 9.328021387 9.13516917 189185409 pulA Carbon cycling Carbon degradation Starch Methylacidiphilum infernorum V4 superkingdom:Bacteria;phylum:Verrucomicrobia;order:Methylacidiphilales;family:Methylacidiphilaceae;genus:Methylacidiphilum;species:Methylacidiphilum infernorum; 8.40780392 8.273315433 7.580371603 7.712566569 7.520736536 7.510183882 7.574888335 7.57542176 7.672491723 7.364123216 7.8247205 197116719 merB Metal Resistance Mercury Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 8.531758746 8.967843032 8.563657525 8.015003953 8.416494281 8.800979907 8.830379763 8.64421504 9.009905506 108804647 sigma_38 Stress Sigma factors Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 10.09114068 10.0003796 10.07261442 9.608831238 9.603407126 9.542037598 9.376234708 9.416244541 9.286448206 9.47286091 9.670328114 9.746061708 24982880 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.311494674 8.088826559 7.671278852 7.671939055 7.909902692 7.809442814 7.854398474 7.565408697 7.584364673 7.582147078 171057487 nagI Organic Remediation Aromatics Aromatic carboxylic acid Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 9.117494811 9.088327371 9.438982719 8.594902812 8.327070121 8.526666918 8.599333847 8.470470638 8.516632017 8.541316712 8.31265327 8.806106017 207738787 xylC Organic Remediation Aromatics BTEX and related aromatics Ralstonia solanacearum IPO1609 8.372838866 8.311533225 8.317787225 7.879708974 7.742034398 7.523423457 8.109764499 7.712748431 7.336706794 7.478106884 7.633084476 220706797 AceB Carbon cycling Carbon degradation others Geobacillus sp. Y412MC61 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.342725947 7.450929636 7.312827678 6.896042445 7.944405093 7.293439987 7.563970252 18977380 pstB Stress Phosphate limitation Pyrococcus furiosus DSM 3638 8.412408796 7.897560853 7.630252414 7.403627299 7.28730044 7.572570803 7.038038959 7.171069255 222480782 glnA Stress Nitrogen limitation Halorubrum lacusprofundi ATCC 49239 8.590257089 8.504510148 8.635861197 8.555120196 8.442073559 8.332153931 8.004001776 8.590329142 8.05169608 8.425970754 8.495498974 8.569075277 114335934 mer Metal Resistance Mercury Shewanella frigidimarina NCIMB 400 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella frigidimarina; 9.507244833 9.519854411 9.337426529 9.055582718 9.38768453 9.139057156 9.392314822 8.896590503 9.226519627 9.164391286 9.616015015 9.356938777 126618514 hrcA Stress Heat shock Cyanothece sp. CCY0110 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.025603077 8.060588914 7.10779837 7.211700705 6.851436855 115516884 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.014623611 8.89032319 8.784924712 8.794160972 8.631749221 8.472054458 8.574262777 8.570851565 8.542469068 8.650633527 8.444956316 8.57974613 7160855 nirS Nitrogen Denitrification uncultured bacterium pA63 superkingdom:Bacteria; 8.286073984 8.462657649 8.639437364 7.661479346 7.605675503 7.821364248 7.729960012 7.38012906 7.802084142 7.583838473 7.700107656 7.886102567 56477036 gyrB other category gyrB Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 7.849081425 7.497363103 7.411142111 7.724097038 7.563001363 8.197826243 7.664893113 7.396415269 7.281723549 225157179 amyA Carbon cycling Carbon degradation Starch Bifidobacterium pseudocatenulatum DSM 20438 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium pseudocatenulatum; 8.228055159 8.034326955 7.914490538 7.936429763 8.065311549 8.327078319 7.891603551 8.223661675 7.866444902 7.823444917 7.639081926 162457244 nmoA Organic Remediation Aromatics Nitoaromatics Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 8.935104235 8.638611382 8.912656406 8.743392149 8.504647639 8.425712397 8.415270768 8.664880758 8.429033662 8.550085869 8.413692448 8.610032275 42558784 merP Metal Resistance Mercury Arthrobacter aurescens superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8.280617356 8.748068821 8.267546047 7.457338583 7.818962695 8.04594448 8.31826516 7.654357297 8.521290042 7.641109697 7.81835973 7.929049872 91690045 nagG Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 8.413399082 8.549644879 8.37020252 7.955590401 8.036971198 8.224386856 8.622227835 8.075056891 8.514168025 7.930218583 8.053877786 7.977130255 149919935 nbaC Organic Remediation Aromatics Nitoaromatics Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 9.213746399 9.234036147 9.058527258 8.524715335 8.481940037 8.697505347 8.413264823 8.604019798 8.524843338 8.728149389 8.774443904 188535392 CadA Metal Resistance Cadmium Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 8.285805361 8.266428087 8.403774939 7.644647163 7.766642357 7.652517404 7.952361377 7.775270331 7.562457025 7.772300181 7.954049873 85860285 CorC Metal Resistance Cobalt Syntrophus aciditrophicus SB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Syntrophus;species:Syntrophus aciditrophicus; 8.659418125 8.973231788 8.910763178 8.372048328 8.452831438 8.471568527 8.39754108 8.125970104 8.355993108 8.39979525 8.506476989 8.651046666 116226010 ara Carbon cycling Carbon degradation Hemicellulose Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 8.584877691 8.347087338 8.564735798 8.388869512 8.178096704 8.131628564 8.115046586 8.308095998 8.243078781 8.172472631 8.183221815 8.1928045 217333264 CopA Metal Resistance Copper Listeria monocytogenes HCC23 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria monocytogenes; 8.331220038 8.374540055 8.426377688 7.537072245 7.845951078 7.753876545 7.619872981 7.848735212 7.844685827 7.862827669 7.785094477 62149150 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.462819991 8.336701288 8.434475123 7.922697732 7.713326053 7.994195037 8.218897685 8.0772026 8.027732781 8.00649799 8.219834946 8.179879997 118471780 obgE Stress Radiation stress Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 9.788252411 9.822312299 9.490428561 9.502926389 8.996968421 9.609217216 9.789074738 9.393105761 9.615301771 9.451244098 9.712592824 9.390173042 31322007 AceB Carbon cycling Carbon degradation others Bradyrhizobium japonicum 8.087311193 8.125532404 7.988545471 7.643873827 7.814913917 7.870352584 7.802528985 8.075692164 8.205279308 8.456306266 8.201235939 226245609 pstC Stress Phosphate limitation Rhodococcus opacus B4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 9.406931554 9.537178085 9.571816418 8.849942211 8.901633457 8.894404622 8.993764022 8.838069152 8.889448753 8.777388016 8.539069591 9.012659063 116693587 ZntA Metal Resistance Zinc Burkholderia cenocepacia HI2424 9.781654459 9.660672419 9.733150243 9.178717917 9.251136738 9.281535399 9.194779507 9.118652739 9.592320688 9.197821667 9.480048162 9.084550709 194246675 obgE Stress Radiation stress Candidatus Phytoplasma mali superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Acholeplasmatales;family:Acholeplasmataceae;genus:Candidatus Phytoplasma; 7.03648596 7.036396696 7.464322143 113944376 pcc Carbon cycling Carbon fixation Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 8.8331403 8.683819033 8.968570599 7.872546261 8.226585797 8.377928536 8.558384613 8.224527412 8.015758883 8.289518263 8.340722946 151939785 endochitinase Carbon cycling Carbon degradation Chitin Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 9.669736034 9.811666915 9.87422291 9.199032477 8.420682767 8.841172948 8.855576881 8.764188804 8.64769375 8.932548535 8.989965449 9.133669656 188022839 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Providencia stuartii ATCC 25827 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia stuartii; 8.730719846 8.129229294 8.743000261 8.0261219 7.969826895 7.924335703 7.597665367 8.003648377 8.02306024 7.564896247 7.675559162 7.844313809 145961744 pilin virulence pilin Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 8.811510757 8.656310353 8.573320404 7.697132473 7.793313378 7.339558485 6.966100374 7.984345713 7.810997684 7.537732036 7.897962914 218291008 AceB Carbon cycling Carbon degradation others Alicyclobacillus acidocaldarius LAA1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 8.521890147 8.901831999 8.742855443 8.450277583 8.339807124 8.482246588 8.329894325 8.63446558 8.244685652 8.724091002 8.578357971 8.687968506 153887790 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Ralstonia pickettii 12D 7.979426791 7.79854535 7.311824646 7.743954335 7.860237739 8.195338719 7.855679932 7.831172585 7.784685165 257797917 sigma_24 Stress Sigma factors Desulfohalobium retbaense DSM 5692 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium;species:Desulfohalobium retbaense; 8.816387172 8.791742875 8.965218938 8.467622173 8.352259154 8.291255086 7.88346488 8.474644947 8.17417351 8.362678887 8.371632404 8.514256489 148474794 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 8.605833758 8.711604134 8.728534255 8.429818377 8.357835268 8.317955369 8.357484615 8.570905089 8.477617271 8.612164851 8.399442582 8.53630725 88799829 4HBH Organic Remediation Aromatics BTEX and related aromatics Reinekea sp. MED297 8.564204057 8.450034371 8.105715269 8.068693814 7.886701226 7.948853868 8.374653507 8.075128966 8.267978523 8.046194832 8.448815588 37813016 mmoX Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 8.222335213 7.987564726 7.871858809 7.621014925 7.55729906 7.644842701 7.320872439 7.658303045 7.125373387 7.347306942 7.507040568 169793380 narG Nitrogen Denitrification uncultured bacterium 8.871686238 8.957789745 8.750423413 8.802593133 8.812456413 8.782370722 8.966753868 8.891655663 8.909302715 8.768984209 8.988511314 8.830668109 162456980 alkK Organic Remediation Others Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 8.639943533 8.509445321 8.387923205 8.37870052 8.189052254 8.064415013 7.820858373 8.238584306 8.202927154 8.141357302 8.295232924 8.196999829 258537287 amoA Nitrogen Nitrification superkingdom:Archaea; 11.33874896 11.1890816 11.27709356 10.27575511 10.37469429 10.30020174 10.51664308 10.19794259 10.78701362 10.51144983 10.5641645 10.6197031 158251624 APS_AprA Sulphur adenylylsulfate reductase uncultured gamma proteobacterium 9.523105263 9.112699174 9.293693771 9.001577362 8.959252126 8.684856374 8.578331716 8.798395976 8.912224414 8.954671764 8.925865287 8.907359752 169631922 pstB Stress Phosphate limitation Mycobacterium abscessus 8.505005811 8.233937637 8.583404365 8.023257863 7.855587337 7.815914836 7.956924643 7.785305803 8.363404932 7.928391197 7.806128477 7.786745007 iegcoxL85 CODH Carbon cycling Carbon fixation 8.155639343 8.125767475 8.078467829 8.22240189 8.020845052 7.891363988 7.950045629 7.930119802 7.82131645 7.75733568 7.998422191 7.565732386 264678243 iro virulence Comamonas testosteroni CNB-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.488782354 8.382457126 8.621241424 8.312524006 8.11338353 8.12361435 8.118496924 8.564947843 8.479968192 8.497712336 8.216521975 8.337383092 227096019 B_lactamase_C Antibiotic resistance Beta-lactamases Geodermatophilus obscurus DSM 43160 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Geodermatophilus;species:Geodermatophilus obscurus; 8.068704528 8.015189562 7.706903455 7.970668578 7.790075095 7.961388468 8.154672966 7.936353983 8.282918865 7.950486428 7.627958833 119194055 hdnO Organic Remediation Aromatics Heterocyclic aromatics Coccidioides immitis RS superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides immitis; 8.90383442 9.241995065 8.816821275 8.000385998 8.909534499 8.910396826 9.207024511 8.827140882 8.971777752 8.794323912 8.378496752 8.567658098 115365761 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 9.743382169 9.798617235 9.619164404 8.878985529 9.188201964 9.282485358 9.992615378 9.080973799 9.905769192 9.036953671 8.89441611 9.372509069 121607816 glnA Stress Nitrogen limitation Verminephrobacter eiseniae EF01-2 9.87329416 10.29895865 10.21256565 10.43554369 10.13224784 10.29882037 10.47073448 10.21789419 10.32185262 10.07312664 9.741895172 228015273 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.82453176 8.72111026 8.861907976 8.531351362 8.163841091 8.628170454 8.67177274 8.543788607 8.592731222 8.184954767 82618383 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.739678218 8.919045038 8.856201814 8.33091666 8.506723515 8.423912723 8.656954501 8.629571553 8.177044646 8.695122096 8.57619748 8.808519742 146277959 pstB Stress Phosphate limitation Rhodobacter sphaeroides ATCC 17025 9.526896546 9.640587643 9.703424963 9.017766123 8.888898119 8.892508806 8.826939246 8.751612526 8.841911618 8.914356448 8.773845694 9.276867756 111017537 bphF1 Organic Remediation Aromatics Polycyclic aromatics Rhodococcus sp. RHA1 8.818457294 8.709114454 8.642262191 8.622187354 8.212034732 8.178858164 8.602329029 8.343634795 8.580388364 8.300170677 8.444258806 8.285687649 169832329 narI Stress Oxygen limitation Candidatus Desulforudis audaxviator MP104C superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Candidatus Desulforudis;species:Candidatus Desulforudis audaxviator; 8.240398001 8.287731709 8.158602797 7.823809598 7.878701708 7.903601388 7.697068552 8.273321289 8.183325281 7.768364774 8.080420924 168185791 TerD Metal Resistance Tellurium Clostridium botulinum C str. Eklund superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium botulinum; 8.232851092 8.426468036 7.651006675 7.33756326 7.548974491 6.923919797 6.72620077 7.601877485 7.244083567 7.37564252 7.329077277 56478173 pstB Stress Phosphate limitation Aromatoleum aromaticum EbN1 9.082978888 8.984316887 9.051636667 9.722395385 9.75001065 9.680993433 9.307801717 10.00971312 9.032236796 9.561346302 9.848014434 9.518083777 34335350 Catechol Organic Remediation Aromatics Other aromatics Pseudomonas sp. ND6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.691372188 8.796644523 8.526442035 8.380474067 8.375679335 7.987633478 8.272381663 8.589488904 8.505767291 8.421294923 8.109076521 8.334788971 154161962 pstA Stress Phosphate limitation Xanthobacter autotrophicus Py2 8.356673006 8.479700619 8.47522068 7.922327069 7.814496593 8.10122341 8.530059257 8.124174087 8.058458185 8.031724061 7.902919424 40713179 mdlB Organic Remediation Aromatics Aromatic carboxylic acid Actinoplanes teichomyceticus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 9.34298491 9.292083373 9.201455427 8.873456418 8.979721772 9.217879209 9.852874257 8.968606838 9.730134975 8.860115317 8.999619147 8.943301104 20804135 phn Organic Remediation Herbicides related compound Mesorhizobium loti superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium; 8.320224139 8.352064851 8.370231202 7.875317352 8.177172624 8.098495428 8.04916816 8.120137975 8.26390614 8.264470262 8.03992033 7.816224312 114054567 xylanase Carbon cycling Carbon degradation Hemicellulose Geobacillus stearothermophilus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.102271646 7.995416995 8.32228834 7.706995974 7.428475504 7.373508666 6.782714241 7.098110413 7.502334501 7.235999111 7.013007087 7.549650342 254046731 SMR_antibiotics Antibiotic resistance transporter Lactobacillus plantarum JDM1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus plantarum; 7.978654168 7.969455174 8.258344629 7.148416468 7.210082545 7.171956651 6.611669049 7.669436534 182436122 TerD Metal Resistance Tellurium Streptomyces griseus subsp. griseus NBRC 13350 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 8.464727257 8.536211649 8.750547532 8.158718335 8.152989454 8.161329962 8.02412 8.125027124 8.078952349 8.356958661 8.029026527 8.31588044 209401906 narG Nitrogen Denitrification uncultured bacterium 8.67541831 8.625797469 8.723506578 8.157283329 7.922085801 8.010191919 8.075556971 8.421122527 7.969598513 8.104028524 8.138316153 260864434 glnA Stress Nitrogen limitation Ammonifex degensii KC4 8.711850639 8.662750726 8.769615811 8.02818673 8.04891755 8.281908561 8.111218425 7.777879492 8.433639924 7.885851733 7.917789535 8.198891653 118655574 ArsC Metal Resistance Arsenic Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 8.852608406 8.436187925 8.852256128 9.082771583 8.779051139 8.649482577 8.736288543 9.135607508 8.830954288 8.995125146 8.88845603 8.680799645 70986823 xylanase Carbon cycling Carbon degradation Hemicellulose Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 8.572291758 8.510547805 8.588060778 8.416149768 8.114665839 7.868629347 8.045680963 8.172517354 8.226192907 8.449903797 8.622774432 7.871842888 151586713 pcc Carbon cycling Carbon fixation Halorubrum lacusprofundi ATCC 49239 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 9.248736737 9.56423573 9.55808512 9.750138669 9.627038994 9.819443686 10.18434714 9.717823627 9.984636913 9.843601334 9.683248619 88914808 Ni_Fe_hydrogenase Energy process Energy process Dehalococcoides sp. BAV1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 8.589544966 8.368466809 8.935194949 7.885195206 7.706970887 7.839767773 7.287157438 7.15215446 7.63020163 7.976598937 7.73195319 8.268547401 42627732 Catechol Organic Remediation Aromatics Other aromatics Arthrobacter sp. BA-5-17 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 11.86500821 11.72168052 11.80406387 11.20898419 11.0861724 11.15522802 10.90802264 10.81189135 11.53537272 11.11780883 11.05182556 11.29123126 92109500 CopA Metal Resistance Copper Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 8.71568414 8.422444235 8.457724801 8.104759967 7.963731196 8.163418243 7.977176817 7.852275427 7.980926509 8.128164127 8.136019831 148511475 iro virulence Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.932621434 8.779374799 9.026564659 8.37918087 8.329379183 8.319399006 8.505991351 8.331371426 8.429275375 8.331293329 8.69222522 150258155 gyrB other category gyrB Victivallis vadensis ATCC BAA-548 superkingdom:Bacteria;phylum:Lentisphaerae;family:Victivallaceae;genus:Victivallis;species:Victivallis vadensis; 8.440514104 8.124257275 8.244213739 8.531680795 8.407212219 8.257496474 8.593472069 8.422201696 8.37043146 8.14081583 8.266901992 8.299528616 221633686 sigma_70 Stress Sigma factors Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 8.627244109 8.300450446 8.709026135 8.453152737 8.316561037 8.256999038 8.293378369 8.503761752 8.651823213 8.532766802 8.493106031 8.157964979 89087607 hly virulence hemolysin Bacillus sp. NRRL B-14911 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 8.648268013 8.607024362 9.182203247 8.198228511 8.067970422 8.030467981 8.084660113 8.301468994 8.194180992 8.478793782 8.230624734 8.557682583 126719806 inv virulence invasion Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.331676377 7.877549446 8.010281214 7.829739029 7.802346008 7.445425075 7.904133308 7.835215803 7.789622681 7.619060603 7.709199116 258556198 amyA Carbon cycling Carbon degradation Starch Nakamurella multipartita DSM 44233 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 7.432686178 8.282381257 8.26792016 8.386715816 7.969431157 8.001841125 7.969044559 8.115602507 108466697 CusA Metal Resistance Copper Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 9.11171243 9.115990215 9.071783957 8.405311015 8.226848611 8.537483996 8.59443387 8.615417155 8.54577054 8.545307215 8.885384075 268593507 MFS_antibiotic Antibiotic resistance transporter Providencia rettgeri DSM 1131 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rettgeri; 8.741566289 8.936557759 9.179446123 8.377594974 8.276617993 8.272146506 7.939947265 8.03472512 7.937535712 7.982965382 8.288455881 8.423999613 154154413 gyrB other category gyrB Parvibaculum lavamentivorans DS-1 9.400117138 9.414781862 9.429241384 8.57573326 8.516837569 8.559157825 8.526667427 9.281808404 8.540396314 8.440270196 8.530172383 166859083 iro virulence Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.668499324 8.90168023 8.566975219 8.242978306 8.470137541 8.839975536 8.875048306 8.351102278 9.027314887 8.613620011 8.454405365 8.824304403 15891176 cap virulence capsule Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.845839025 8.575044837 8.914207794 8.30361005 8.13968663 8.173026072 8.061926514 8.000482857 8.084347282 7.941812514 7.964031029 8.503211948 24984155 atzA Organic Remediation Herbicides related compound Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.10865953 8.265033394 8.488620846 8.201828665 7.80942048 8.168726638 8.023809112 8.067300456 8.097710092 7.888241173 7.733566454 272533219 iro virulence Burkholderia sp. CCGE1002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.907785095 7.991378526 7.374268765 7.666829856 7.926764013 7.68218109 7.549388436 8.17034692 7.629546723 7.55147735 7.6444425 77378701 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.454002649 8.364287167 8.65482394 7.831985555 7.785628519 7.760220169 7.457896006 7.292465778 7.982522041 7.755607119 7.693881699 7.703913924 221156881 pstB Stress Phosphate limitation Thermomicrobium roseum DSM 5159 10.55917632 10.65663131 10.53474522 9.754022122 9.891625439 10.05248006 10.70141484 10.16754783 10.73839413 10.05237725 10.14322466 10.02701535 182678498 ChrA Metal Resistance Chromium Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 7.988642627 8.668296301 8.06767816 8.407249256 8.44653514 8.6662466 8.362432639 8.692872486 8.010508532 7.957439412 8.136478687 3550667 nagI Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas sp. RW5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 7.501436462 7.437200213 7.274578081 7.144013088 7.239529128 7.882955428 7.161996723 6.992733021 7.343136711 189428222 ara Carbon cycling Carbon degradation Hemicellulose Bifidobacterium longum DJO10A superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 10.1361536 10.22118645 10.28213194 10.46370167 10.40809973 10.40728517 10.6013804 10.50398015 10.60398022 10.78952879 10.61166262 10.5727652 iegcbbL2 rubisco Carbon cycling Carbon fixation 8.012987604 7.605403802 7.376384418 7.822652966 7.486204708 7.782526339 7.577607906 7.87382557 7.478731785 219545406 pstB Stress Phosphate limitation Methanosphaerula palustris E1-9c 9.381019666 9.130713044 9.18339465 8.758838632 8.658348336 8.453611676 8.458189081 8.333399943 8.56359088 8.420418554 8.283826962 8.622833851 251794818 nplT Carbon cycling Carbon degradation Starch Paenibacillus sp. JDR-2 8.938933448 9.094100622 8.922613793 8.698910088 8.673158012 8.662933049 8.508337458 8.387476665 8.425721007 8.614424635 8.4900056 8.663726807 110592183 nirS Nitrogen Denitrification uncultured organism 8.085525636 7.779348616 7.17607008 7.279559324 7.381720175 7.071511857 6.908237003 7.551549678 6.811292204 7.168543393 145555045 tfdA Organic Remediation Aromatics Chlorinated aromatics Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 8.543263172 8.230667588 7.886727477 8.524611781 8.335391499 8.52118856 7.231255778 8.7424777 7.694816941 7.775986703 7.899177397 1223924 endochitinase Carbon cycling Carbon degradation Chitin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 9.28047042 8.896047904 8.819751514 9.365243289 9.002544262 8.646816022 9.248248189 9.113859971 9.267403258 8.906557234 8.702831483 34483771 ahpC Stress Oxygen stress Wolinella succinogenes superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Wolinella; 7.894780143 7.756765447 7.60873319 7.620323975 7.442286868 7.423403246 7.644423907 133912608 alkK Organic Remediation Others Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 9.788219184 9.352892092 9.371661687 8.669938734 8.776114188 8.955895637 9.355243229 8.791921681 9.355394582 9.109852416 9.411507847 9.169805961 153011261 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 8.750190775 8.561866729 8.573811634 8.547014783 8.618685911 8.394911567 8.657598223 8.443387515 8.390118747 8.555243241 8.939473199 8.354882526 52786303 phoA Stress Phosphate limitation Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 8.279145826 8.531613607 8.303016946 7.786068737 7.733423631 8.092330564 8.046707864 7.805423242 8.579252216 7.866202756 7.756055171 7.915122238 55415705 dcmA Organic Remediation Chlorinated solvents Hyphomicrobium sp. KDM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 8.634881694 8.533921906 8.475822715 8.271694144 8.398104152 8.432987959 8.92554807 8.440827057 8.59293719 8.442126294 8.701790362 8.534549437 258527676 amyA Carbon cycling Carbon degradation Starch Dickeya dadantii Ech586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 8.84237147 8.821367083 8.907719831 8.356033849 8.187504371 8.106521764 8.170879086 7.800703851 7.87319627 7.938797534 8.252464361 116668884 narJ Stress Oxygen limitation Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 9.411132369 9.424918888 9.494003717 8.939187247 8.931118116 8.867371219 8.75352237 8.923527955 8.79600449 8.93051421 8.736696015 9.180765869 148500808 fnr Stress Oxygen stress Sphingomonas wittichii RW1 8.754553131 8.900294697 8.632419235 8.215334905 8.529721072 8.716964447 8.959613503 8.574733064 9.1495343 8.473152067 8.4606602 8.549228759 262080207 sigma_24 Stress Sigma factors Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Haliangiaceae;genus:Haliangium;species:Haliangium ochraceum; 8.176646608 8.63620287 8.476123564 8.690774976 8.557155411 8.360413178 8.469619019 8.907837979 8.701773369 9.030578094 8.677001945 8.734755598 254418444 iro virulence Brevundimonas sp. BAL3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas; 8.663778108 8.381892575 8.622070257 7.957734154 7.978721356 8.285132287 8.366545694 8.244400117 8.320277183 8.157035713 8.305025235 254561054 glnA Stress Nitrogen limitation Methylobacterium extorquens DM4 9.171558313 9.010606841 9.231192325 8.519587387 8.360397775 8.376916383 8.12062588 8.11128312 8.489018083 8.461250739 8.390093955 8.721504056 260595988 oxyR Stress Oxygen stress Cronobacter turicensis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter; 8.645098012 8.361188276 8.652751118 8.654124877 8.506669892 8.393457259 8.886607868 8.493113576 8.465091354 8.450792467 8.250740378 126578430 gyrB other category gyrB Algoriphagus sp. PR1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cyclobacteriaceae;genus:Algoriphagus; 8.97189058 8.989360824 9.137518542 8.088056201 8.106893988 8.344797255 7.868146354 7.710093647 8.222035353 7.882875906 8.51152799 98977951 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Sphingopyxis alaskensis RB2256 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 8.328544335 8.455309872 8.377751582 8.014154013 7.803665675 8.016962519 8.444659711 8.238330566 8.679476045 7.937716095 7.985061958 7.877767926 114539228 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 9.095845489 8.980727583 9.032781021 8.649729599 8.390791959 8.019191369 8.720671502 8.401885215 8.571996808 8.09544959 8.15294475 150385414 tutFDG Organic Remediation Aromatics BTEX and related aromatics Victivallis vadensis ATCC BAA-548 superkingdom:Bacteria;phylum:Lentisphaerae;family:Victivallaceae;genus:Victivallis;species:Victivallis vadensis; 8.523233031 8.47913226 9.523128871 8.285742981 8.019622703 8.030629878 8.035242319 8.193951206 8.089527428 8.070200024 8.259273085 8.282303111 220714663 catB Organic Remediation Aromatics BTEX and related aromatics Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.669889685 8.660224053 8.414710707 8.519870306 8.609760929 8.293986864 8.571791215 8.919440721 8.622780679 8.737860699 8.454760727 8.657604416 253576539 cda Carbon cycling Carbon degradation Starch Paenibacillus sp. oral taxon 786 str. D14 8.592068244 8.715983624 8.804246385 7.918403727 7.659202281 7.989978154 8.023149545 7.727937698 7.936055985 7.728858048 7.956991409 8.194111182 212544308 BpH Organic Remediation Aromatics Aromatic carboxylic acid Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 8.341437697 8.171877843 8.475203464 8.00615793 7.763366819 7.739365029 7.417058954 7.198211854 7.838998192 7.552527528 7.565440836 8.086117118 31408060 helicase_family_4_DnaB_like Bacteria phage REPLICATION Bacteriophage Aaphi23 order:Caudovirales;family:Myoviridae; 8.32825824 8.360034602 8.547446333 7.947448601 7.988856026 8.148579327 7.496216514 7.532125361 7.687565724 7.792157368 149951551 CadA Metal Resistance Cadmium Alkaliphilus metalliredigens QYMF 8.971700154 9.08537268 8.634849653 8.481333989 8.872561786 9.1766465 9.54477757 9.069101538 9.099186821 8.908062308 9.229437186 9.179234658 157915094 nmoA Organic Remediation Aromatics Nitoaromatics Salinispora arenicola CNS-205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 8.342444351 8.310611559 8.168331901 8.327011126 8.182698125 7.924984425 8.398320445 8.329042798 8.329013143 8.444584033 8.493946832 7.70808463 189346302 phoB Stress Phosphate limitation Chlorobium limicola DSM 245 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium limicola; 8.270432752 8.437432685 8.234958193 8.075661416 8.132506029 7.939540472 8.024681727 8.179555595 8.15722649 8.015747085 7.753546309 8.066400571 261373477 clpC Stress Protein stress Fibrobacter succinogenes subsp. succinogenes S85 superkingdom:Bacteria;phylum:Fibrobacteres;class:Fibrobacteres;order:Fibrobacterales;family:Fibrobacteraceae;genus:Fibrobacter;species:Fibrobacter succinogenes; 8.348378869 8.644530053 8.150481781 7.622992036 7.643638189 8.428333403 8.34009914 8.146498766 8.327168553 7.849157471 8.218605866 8.372747445 219668647 rd Organic Remediation Chlorinated solvents Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 8.19616646 8.499124017 8.396615968 7.840766117 7.535549139 7.766577869 7.506285245 7.49254575 7.987972511 7.739079362 7.492575873 7.941126573 169006642 ChrA Metal Resistance Chromium Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 9.356016841 9.847470676 9.147995204 8.923455066 8.396953542 8.114780733 8.527087841 8.50393018 8.794985613 8.721322316 8.806393697 8.561851429 261408412 cap virulence capsule Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 9.294522326 9.016496719 8.690719247 8.965179827 8.774704292 8.800667337 8.734732101 9.234908941 8.844278041 8.959119763 9.032457627 8.578217034 117610431 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Magnetococcus sp. MC-1 superkingdom:Bacteria;phylum:Proteobacteria;genus:Magnetococcus; 9.069976388 9.11780773 9.505414975 9.365686372 9.203434836 8.836004423 9.252969595 9.678010304 9.07546197 9.616290249 9.42843258 9.551309684 160936421 sigma_70 Stress Sigma factors Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 8.073904306 7.741792028 7.627929682 7.788603323 7.636981717 7.517002653 7.564427749 7.439792031 73749251 PceA Organic Remediation Others Dehalococcoides sp. CBDB1 8.003163488 8.142712219 8.028742264 7.145012321 7.317260702 7.74606938 7.724270671 7.80567965 7.909466712 7.312345351 7.635279543 7.70018115 146402350 Adaptations_to_atypical_conditionsIII Bioleaching other category Acidiphilium cryptum JF-5 8.517179667 8.794486041 8.542399394 8.85636197 9.052374947 8.445444912 9.243742851 9.006178062 8.879264151 8.514465309 8.728623221 8.547801228 82715329 nagG Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 9.820070438 9.790917026 9.99821508 9.105296283 9.29563398 9.187488455 9.136897556 8.658196025 9.350653561 8.891039585 9.014884082 9.389283508 158317443 ureC Nitrogen Ammonification Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 9.46768392 9.38566892 9.285424897 9.183878003 8.665416158 9.079847072 9.318458359 8.983538488 8.999845539 8.996890727 8.875581093 9.157154263 197297053 pstB Stress Phosphate limitation Ruminococcus lactaris ATCC 29176 8.42409778 8.537026748 8.556243476 7.973593687 7.744963346 7.854148581 7.729682175 7.533462335 7.781012708 7.407816905 7.932606939 134100603 narJ Stress Oxygen limitation Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 8.416294126 8.42240404 8.374771298 7.947474635 7.944802028 8.080168542 8.192371573 8.320690041 7.992421637 7.948216946 7.795725897 124516456 ABC_transporter_II Bioleaching other category Leptospirillum sp. Group II UBA 9.005721087 9.005922069 9.068010373 8.626096836 8.646947572 8.1614796 8.255330453 8.631764023 8.704617242 8.566107648 8.799516024 8.517037066 83950415 pstB Stress Phosphate limitation Roseovarius nubinhibens ISM 9.381598629 9.71940031 9.624439777 8.795102125 9.112565478 9.016868088 9.153232434 9.463287845 9.002466049 9.481629393 9.406885822 9.414253314 224950059 Tet Antibiotic resistance other Clostridium methylpentosum DSM 5476 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium methylpentosum; 8.517637511 8.754553866 8.752893223 8.522113747 8.60223384 8.691565213 8.803104074 9.004367861 8.792246268 9.208541016 9.168771142 8.798332841 55231571 pstB Stress Phosphate limitation Haloarcula marismortui ATCC 43049 8.683074854 8.771117012 8.66224739 8.323597364 8.357199536 8.244411003 8.386468839 8.4429479 8.546752726 8.41767866 8.463020772 8.423779483 269791037 nplT Carbon cycling Carbon degradation Starch Thermobaculum terrenum ATCC BAA-798 8.78050492 8.52495825 8.709812308 8.641584477 8.400082519 8.295648143 8.423868426 8.393923385 8.663176657 8.439930266 8.490417108 8.37869519 148657222 sigma_70 Stress Sigma factors Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 9.069781036 9.343843132 8.836225822 8.67952204 8.913802123 9.170967089 9.210207903 9.405082787 9.157594735 9.442420225 9.512372397 9.209137416 67154177 pheA Organic Remediation Aromatics Other aromatics Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter; 8.920836802 9.269989934 9.01610073 8.844678543 9.167478357 8.896078825 8.93214648 9.586100653 8.447101012 9.27778654 9.485034039 9.127391389 220711708 phtA Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.523060379 8.69888477 8.617864317 8.274893082 8.160536897 7.964461975 7.651580531 8.438048937 8.050612516 7.977346898 8.039989401 255534695 nplT Carbon cycling Carbon degradation Starch Flavobacteriaceae bacterium 3519-10 8.033087797 8.496533856 8.240260666 7.454497519 7.385449683 7.78731801 7.696527035 7.561705878 7.901087096 7.436724508 7.582490777 7.489316572 117998530 silC Metal Resistance Silver Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.024717062 6.95341428 88776438 pcaG Organic Remediation Aromatics Other aromatics Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 7.49815557 7.29032914 7.244206672 6.822272337 7.223637226 7.66057996 7.038526618 7.398522135 166859797 iro virulence Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 9.051351737 8.783695702 9.172166406 8.38064238 8.49089495 8.624065394 8.77000285 8.301152621 8.869718721 8.64712003 8.895904406 8.584265701 85668944 pcc Carbon cycling Carbon fixation Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.35254854 8.28321688 8.439088234 8.092467464 8.168449363 7.93643159 8.071090538 8.397571888 8.037389824 8.282711018 8.214490961 7.916845108 242399849 pstB Stress Phosphate limitation Thermococcus sibiricus MM 739 8.373422446 8.268271368 8.675643427 7.73717708 7.527606795 7.675520786 7.482812766 7.409512076 7.834046686 7.613401858 7.627284234 7.841082518 50954482 ZntA Metal Resistance Zinc Leifsonia xyli subsp. xyli str. CTCB07 8.965788875 8.88020897 8.969998334 8.185597802 8.331631152 8.425450671 8.838285928 7.979460173 8.832055177 8.376290777 8.23648762 8.565309148 148500137 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.261897879 8.392243098 8.611537461 8.466672468 8.487243645 8.047585231 8.565362573 8.983768233 8.132437115 8.691675697 8.100978001 8.773333417 153803876 glnA Stress Nitrogen limitation Campylobacter hominis ATCC BAA-381 8.444054101 8.640637931 8.822302349 8.272281133 8.101990826 8.030040194 8.200244298 8.323521551 8.266278704 8.377691703 8.155602336 8.418329876 211961027 alkK Organic Remediation Others Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 9.166823568 9.1342517 8.945917963 9.093497889 8.96874721 9.019275756 8.800121672 9.178783708 8.659963369 8.951078211 8.971029962 9.169639993 56311479 pilin virulence pilin Aromatoleum aromaticum EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 8.561405425 9.0251857 8.182870447 8.104733284 8.648132881 8.72601818 8.287763157 8.589158524 8.455372002 8.498571111 8.321355434 162952388 amyA Carbon cycling Carbon degradation Starch Renibacterium salmoninarum ATCC 33209 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Renibacterium;species:Renibacterium salmoninarum; 8.623829234 8.609565675 8.738117693 8.535519512 8.474641763 7.994745925 7.952980753 8.004939244 8.181043412 8.352254283 7.9514865 84778365 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.960097144 7.975872699 7.512836365 7.253072071 7.308950506 7.159571253 7.534889729 7.852319187 7.463345278 7.108771591 7.532363958 118697154 linB Organic Remediation Pesticides related compound Burkholderia ambifaria MC40-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 8.47332721 8.807913322 8.226603242 8.756146587 8.909921883 8.870543846 9.255528854 8.60909175 9.067852472 9.11537326 8.951871325 118734797 sox Sulphur Sulphur oxidation Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 9.48936976 9.319374093 9.378267079 8.877776023 8.975630008 8.754123209 8.643045142 8.810969996 8.801723857 8.905479873 8.841347504 9.009317337 111221867 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 8.83648504 8.871670799 8.693842169 8.814665333 8.566998163 8.41585384 8.644908291 8.647526483 8.738867306 8.615997672 8.525874809 85059279 type_III_secretion virulence secretion Sodalis glossinidius str. 'morsitans' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Sodalis;species:Sodalis glossinidius; 8.408525934 8.568695707 8.423654866 8.285587506 8.319251108 8.256841058 8.343987597 8.373091067 8.49106886 8.343660428 8.386982303 8.269046109 258554466 AceA Carbon cycling Carbon degradation others Nakamurella multipartita DSM 44233 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 9.40565129 9.500699499 9.010007089 8.837910056 8.75484985 8.726798386 8.751830136 8.988418575 8.874053144 8.854798849 9.005326295 37963677 ZntA Metal Resistance Zinc Sphingomonas paucimobilis 9.325356972 9.254283186 9.093568112 9.069682389 9.129331653 8.958640252 9.415736052 9.267401071 9.064533079 9.063820896 9.009379164 8.812326617 197783993 mannanase Carbon cycling Carbon degradation Hemicellulose Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 7.903783387 7.885866353 7.371648538 7.518740379 7.422803788 6.873111687 7.203288842 7.527823286 7.2325265 6.911778504 6.979395832 223938614 glnA Stress Nitrogen limitation bacterium Ellin514 8.518300238 8.706724759 8.637266858 8.330267574 8.309173522 8.057110189 8.29213278 8.460313341 8.207288923 8.09403382 8.356897123 28493228 glnA Stress Nitrogen limitation Tropheryma whipplei str. Twist 8.063187424 8.068684087 7.485709722 7.844157911 7.672131026 7.617800968 7.526311987 7.369846958 7.471208057 72118125 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.141139965 8.499292347 8.21016703 8.017241129 7.996576027 7.779423728 8.30429199 7.934714584 7.881919404 8.020015977 7.78210106 196192415 sigma_70 Stress Sigma factors Synechococcus sp. PCC 7335 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 9.302485305 9.474475702 9.123432215 9.247478747 9.219926433 9.068304955 8.683153876 8.879959098 8.701373322 8.933977327 9.079954727 9.180759354 194334662 BchY other category chlorophyllide reductase Prosthecochloris aestuarii DSM 271 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Prosthecochloris;species:Prosthecochloris aestuarii; 9.397216554 9.047398902 9.39561738 8.856944186 8.649740703 8.7162214 8.643960447 8.62507921 8.631711677 8.627833508 8.944008705 226836752 pstC Stress Phosphate limitation Acinetobacter sp. ATCC 27244 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 6.697395912 7.50399935 70729590 exaA Organic Remediation Chlorinated solvents Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 9.486588403 9.067957615 9.299600031 8.544930622 8.599033988 8.817039543 8.826428972 8.089426838 9.010716063 8.537765449 8.812061837 8.769692261 89046618 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 9.613671948 9.288518698 9.338903846 9.45895855 9.240080066 9.050630781 9.313136899 9.35098232 8.863823879 9.131757337 9.167113466 9.16276686 90581170 hly virulence hemolysin Vibrio angustum S14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium angustum; 8.21247886 8.227486058 8.63476899 8.065030467 8.065568087 7.743592066 7.292660506 7.156253216 7.84488189 7.701019089 7.982787971 104779476 sdsA Organic Remediation Others Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 8.491475575 8.443633423 8.008103518 7.739214838 8.158717399 8.256503165 8.054521035 8.421891106 8.285052049 8.31880491 8.498957506 14026766 pcaG Organic Remediation Aromatics Other aromatics Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 8.566852143 8.791075158 8.747538073 7.922155913 7.844901714 8.276677354 8.536889935 8.006591503 8.503628983 8.374255842 8.23744181 8.485770254 163738998 phn Organic Remediation Herbicides related compound Phaeobacter gallaeciensis BS107 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 8.641192798 8.343701587 7.992811841 8.27182842 7.969928271 7.653380668 8.297978781 7.810970939 7.840278468 7.974320342 7.815913486 83853673 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Oceanicaulis alexandrii HTCC2633 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis;species:Oceanicaulis alexandrii; 8.821432172 8.572260659 8.780414306 8.078133715 7.929018033 8.06171394 7.880434242 7.657503356 8.249087429 7.806099421 7.740655177 8.061986841 56965727 katE Stress Oxygen stress Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 8.002820234 8.138663261 7.613202712 7.090369388 7.520464746 7.271321095 7.957741868 7.68559851 7.612714189 7.440113689 217977649 xylG Organic Remediation Aromatics Aromatic carboxylic acid Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 8.701470111 8.307783182 8.294415969 8.538051368 8.465181707 8.350810807 8.25628319 8.52415987 8.256816863 8.467108038 8.408836899 8.311424508 145215975 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 9.777756168 9.909837322 9.671400933 9.156119001 9.214763758 9.300430396 9.601372562 8.982527795 9.900397979 9.031977521 9.020637331 9.203286937 148499635 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 9.127413034 9.034609648 9.230088916 8.375742957 8.508580969 8.468312189 8.519903297 7.948616156 8.614742129 8.328774275 8.247184699 8.529417942 268591304 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rettgeri; 8.867647603 8.649206747 8.871350374 8.814120055 9.114717179 8.599422279 8.989144028 9.182491194 162952422 pimF Organic Remediation Aromatics Aromatic carboxylic acid Renibacterium salmoninarum ATCC 33209 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Renibacterium;species:Renibacterium salmoninarum; 8.222494255 8.740628604 8.291938975 8.033690909 7.888278816 7.809057647 7.911858345 7.822495372 8.375468616 7.855335897 7.852170583 7.809313667 37521111 clpC Stress Protein stress Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 9.590895867 9.339449588 9.430076118 9.282755171 9.116465501 8.963099509 9.351891511 9.512435169 9.265511742 9.405216581 9.247298003 9.395262454 77967729 iro virulence Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 9.196367778 9.127572944 9.203297285 9.638738717 9.694891704 9.489895839 9.497036834 10.03947206 9.530990059 9.553949761 9.51451133 9.741061467 54303284 pilin virulence pilin Photobacterium profundum SS9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 7.641751853 7.557900493 7.244243305 7.007081518 7.520860823 6.973515398 7.18056776 7.551047755 186463005 glnA Stress Nitrogen limitation Nostoc punctiforme PCC 73102 8.699590278 8.665177793 8.747125197 8.259733223 8.16635927 7.980497367 8.018235506 7.896724342 8.257187343 7.733893136 7.645163992 8.007611698 284053338 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira platensis; 8.184639091 8.038741201 7.320580974 7.389803456 7.519284409 7.319377635 6.922608485 7.890945934 7.639104803 7.404064653 7.40380123 256583921 pstB Stress Phosphate limitation Cryptobacterium curtum DSM 15641 9.499348643 9.526751986 9.526390759 8.691039916 8.643713437 8.876436941 8.892193388 8.326811949 8.999542083 9.037334755 9.261272936 220721157 ChrA Metal Resistance Chromium Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 8.427877595 8.667593178 8.766727542 8.514864925 8.797610723 8.675917274 8.80458144 9.1730979 8.760061403 9.272374776 8.992500382 8.779566391 168703207 sigma_70 Stress Sigma factors Gemmata obscuriglobus UQM 2246 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata;species:Gemmata obscuriglobus; 8.187761163 8.126008249 7.416122098 7.66806653 7.634738144 7.733327705 6.784551722 7.871702187 7.172721689 7.226880289 7.143950308 85668143 Catechol Organic Remediation Aromatics Other aromatics Roseovarius sp. 217 8.665188642 8.322937708 7.807691526 8.055509277 8.433821054 7.995772798 8.697218093 7.703714701 7.800083935 7.782174846 159045963 sigma_24 Stress Sigma factors Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 10.21303882 10.46862989 10.37196973 9.240351928 9.772000336 10.03455826 10.6342414 9.980000319 10.52747607 9.559313625 9.427368302 9.937245867 34101330 pcc Carbon cycling Carbon fixation Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 9.319123298 9.186175695 8.908842807 8.753549785 8.441261244 8.448319445 8.782091544 8.776172448 9.094168305 8.991239731 209957348 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 8.910085002 8.961532945 8.65166309 9.155509485 8.76295228 9.382611463 9.169065129 8.959548537 9.053108187 9.093121745 8.727848709 145046538 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.605595247 8.695639918 8.868149649 8.422677749 8.349380326 8.224543391 8.22341449 8.547029322 8.225180233 8.560537342 8.329442465 8.349547359 103423220 sigma_70 Stress Sigma factors Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus delbrueckii; 9.078651473 9.011332609 9.152782041 9.102906222 9.122077232 8.774578792 9.10051129 9.713103701 9.174348963 9.469987696 9.380909562 9.580023351 255300957 nrfA Nitrogen Dissimilatory N reduction Campylobacter showae RM3277 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter showae; 8.415656352 8.252157203 7.930558078 8.153101738 8.234431307 8.47411318 8.202046631 8.255485746 7.929725589 8.358559031 8.125739639 240172222 inv virulence invasion Mycobacterium kansasii ATCC 12478 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 7.880349394 8.251303756 7.661144653 7.748012201 8.055873341 8.213365775 7.919468156 7.958848341 8.309297909 198253935 ureC Nitrogen Ammonification Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 8.323650592 7.911388773 8.280151552 7.76887056 7.866430064 7.798752997 7.666438736 7.819922453 7.986672599 8.02227454 7.897743606 7.910450251 17987073 phoA Stress Phosphate limitation Brucella melitensis 16M superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Brucella;species:Brucella melitensis; 8.476522913 8.485993639 7.563945801 7.409620249 7.526050392 7.735993973 7.176079323 8.183433911 7.416041466 7.323129632 7.723366026 108802861 gyrB other category gyrB Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 9.153273563 8.972212093 8.867748837 8.184422917 8.271872578 8.340662288 9.230254264 8.641150642 9.217459284 8.595624712 8.87673893 8.657125643 212633994 Arylest Organic Remediation Aromatics Other aromatics Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 8.413985763 8.250385422 8.611094451 8.244008519 8.514468597 8.456637441 8.079911259 8.583267143 8.078931193 8.501684368 8.525755183 8.611585415 19552133 cadBD Metal Resistance Cadmium Corynebacterium glutamicum ATCC 13032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 9.055300905 8.397199469 8.964638081 9.077783001 8.766595921 8.951129843 8.936511902 8.760025924 8.862540813 8.570492013 8.924873946 60476298 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 9.298170122 9.476111237 9.721221932 8.950616029 8.853897892 8.797755297 8.807803867 8.902055465 8.762660217 9.02292078 8.937387866 9.27551429 126627124 TerD Metal Resistance Tellurium Marinobacter sp. ELB17 9.41781784 9.569842568 9.876113241 9.384169855 9.619892869 8.745116506 9.709134199 10.11565021 9.362092129 9.982964036 9.753169293 9.987931798 148554939 exaA Organic Remediation Chlorinated solvents Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 9.608674675 9.495625872 9.486893763 8.922829347 8.903622014 8.956009355 9.277453698 8.90994513 9.283643239 9.231784227 9.182517037 9.160263492 152967350 hrcA Stress Heat shock Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 9.848278247 9.696715271 9.85471118 9.367145516 9.256885099 9.186842343 8.979431726 9.194844557 9.10823528 9.210679421 9.169478417 9.474649283 161166085 sigma_24 Stress Sigma factors Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 8.003810161 8.097067559 7.672200206 7.647548102 8.002731616 7.688914708 7.839468459 8.019246524 7.969741144 7.909120568 83595955 phn Organic Remediation Herbicides related compound uncultured marine bacterium Ant24C4 superkingdom:Bacteria; 8.821542828 8.994568093 9.082443609 8.541885002 8.538727651 8.394670269 8.120561443 8.560414784 8.638035831 8.433396025 8.583639965 8.67515269 254984972 nrfA Nitrogen Dissimilatory N reduction Geobacter sp. M18 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.770013572 8.611092325 8.865002747 8.516901897 8.427411597 8.384238213 8.373847841 8.40556559 8.34927458 8.485663771 8.516676983 8.395701813 256679478 ABC_antibiotic_transporter Antibiotic resistance transporter Streptomyces sp. SPB78 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.344914306 8.279941563 8.385893368 8.198327266 8.11019025 8.433221733 8.3228383 8.500134321 8.440215044 8.485410442 8.486349463 8.393297511 227454578 glnA Stress Nitrogen limitation Corynebacterium aurimucosum ATCC 700975 8.174123981 8.620958989 7.806000515 7.673802444 8.603688132 8.748868552 8.124783467 8.505574234 8.0659285 8.163674533 8.669011914 146404457 sox Sulphur Sulphur oxidation Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.408675579 8.30420295 8.338890914 8.703085157 8.544587599 8.518445361 8.104255129 8.719835584 8.743937373 8.637162398 8.669344425 8.221265551 91681627 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.193388904 9.645039985 9.486699799 9.374049555 9.420011514 10.09155961 10.06655199 9.515163174 10.35956364 9.22925979 9.309423139 9.60770757 110621008 glnA Stress Nitrogen limitation uncultured methanogenic archaeon RC-I 8.468597253 8.373042781 8.249133217 7.681034769 7.602769606 7.842442014 7.499452128 7.433702924 7.862048556 7.645244134 7.648156011 7.792535645 223985689 pstB Stress Phosphate limitation Holdemania filiformis DSM 12042 9.068171314 8.698715744 9.140650093 8.823456787 8.574585756 8.682242092 8.966978126 8.763301044 8.86526762 8.626192616 8.706055219 8.600318869 154162596 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 9.160025833 8.858348247 9.237442194 8.674291423 8.486204788 8.477548634 8.457939981 8.556985935 8.689886876 8.538982501 8.906755793 256362986 pstB Stress Phosphate limitation Catenulispora acidiphila DSM 44928 8.518355421 8.416334525 8.449937764 8.281477885 8.211646489 8.213270837 8.404278918 8.329354371 8.430505664 8.578192315 8.466117664 8.368165875 115368445 sigma_32 Stress Sigma factors Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 8.439669772 8.269972873 8.107672186 8.122193912 8.075791336 7.905568801 8.163385598 8.128944835 8.036104243 8.059640743 259033879 rubisco Carbon cycling Carbon fixation Mesorhizobium opportunistum WSM2075 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 8.419816367 8.543359002 8.722109599 7.65244815 7.771811287 8.000668246 8.172761884 7.802608127 8.239888019 7.993203263 7.986844844 8.073467527 113902435 nitA Organic Remediation Aromatics Other aromatics Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 8.354937965 7.977056184 8.029356022 8.105281917 7.903718599 7.407610044 7.987097439 7.834530103 8.048360635 7.791863113 7.893963557 108760925 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 8.552946973 8.213267071 8.56036041 8.377286468 8.25051706 8.061682759 7.862951675 8.371857444 8.242701292 8.431998399 8.16975629 8.223920811 257796211 fnr Stress Oxygen stress Gluconacetobacter intermedius 9.035326642 8.940516836 9.188407572 8.835361739 8.719503511 8.523003256 8.661262677 8.828200791 8.489744747 8.827393693 8.68117531 8.55333251 77165857 ppx Phosphorus Phosphorus utilization Nitrosococcus oceani ATCC 19707 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 9.271939799 9.237050364 9.447722875 8.846398536 9.014649104 8.608488162 8.542979239 8.806870683 8.371732416 8.729412758 8.531832036 9.002367405 21111178 linB Organic Remediation Pesticides related compound Xanthomonas campestris pv. campestris str. ATCC 33913 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 8.813673151 8.569507189 8.316265483 8.625785978 8.113358338 8.776892861 8.500697156 8.39131649 8.116255393 8.141455803 8.242634296 581743 gyrB other category gyrB Streptomyces caeruleus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7.510773226 7.397221235 7.254440052 7.729524527 7.539371502 7.667867099 7.272228951 7.614317053 218763001 pcc Carbon cycling Carbon fixation Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 8.658431418 8.886080495 8.585883546 8.516742317 9.01574576 9.174276684 8.912095081 9.299186608 8.790528198 9.06891256 9.049072895 9.00484411 90822551 amoA Nitrogen Nitrification superkingdom:Bacteria; 8.182092398 8.164608133 7.705644454 8.103637451 7.859046903 8.096715091 8.05905992 8.013147024 8.078530211 7.988763095 159044105 bclA Organic Remediation Aromatics Aromatic carboxylic acid Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 9.336192384 9.14890762 9.226430458 8.526763777 8.585972137 8.479811839 119484786 mer Metal Resistance Mercury Lyngbya sp. PCC 8106 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Lyngbya; 8.528610134 8.308524317 8.653896147 8.292778668 7.954519678 7.94934696 7.404482563 7.215165469 7.470490372 7.657168133 7.893879267 254951454 sigma_24 Stress Sigma factors Dyadobacter fermentans DSM 18053 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 8.424912063 8.378250245 8.272383974 8.227564414 7.81982337 8.046207342 8.280263974 7.91828353 8.244239115 7.636457977 7.454584155 7.670867253 118618973 obgE Stress Radiation stress Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 11.61569322 11.43990136 11.64042774 10.90271244 10.37030321 11.3841532 11.05818032 11.03281607 10.99563503 84514375 pstB Stress Phosphate limitation Loktanella vestfoldensis SKA53 8.744193529 8.608187865 8.389015196 8.219178685 8.005912624 8.361840777 8.408809054 8.453611132 8.31109837 8.278342352 8.22578815 219864989 gyrB other category gyrB Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.606599398 8.220165467 8.419297423 8.250376078 8.299606338 8.128017758 8.278447127 8.295885567 7.929797484 8.027500606 8.1796697 7.92565026 190685950 cap virulence capsule Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 8.730490249 8.749981807 8.390978929 7.39900699 7.366748468 7.872359946 8.055068914 7.608447844 8.698896606 7.632835253 7.633105581 7.603489655 162457339 sigma_70 Stress Sigma factors Sorangium cellulosum 'So ce 56' 8.15999362 8.07318135 8.100007182 8.048379175 8.031448977 8.050293382 7.994835366 8.060016195 8.550601585 7.93446099 7.96900221 7.783678526 113527678 alkK Organic Remediation Others Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.277240699 8.214310368 8.405828174 8.149923139 7.938330557 8.25148997 8.013499223 8.469753404 8.136571204 8.11634276 7.904741323 147851925 pstS Stress Phosphate limitation Synechococcus sp. RCC307 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.608698263 8.512382581 8.020104819 8.109647759 8.175005594 8.0485652 7.991381726 8.232911638 7.868015029 7.95116862 8.179439512 93454895 nrfA Nitrogen Dissimilatory N reduction delta proteobacterium MLMS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 8.950625654 8.462218718 8.734732115 8.118291049 8.110675242 8.364137884 258596802 nrfA Nitrogen Dissimilatory N reduction Desulfurivibrio alkaliphilus AHT2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfurivibrio;species:Desulfurivibrio alkaliphilus; 8.716887579 8.383515717 8.406598417 8.572796754 8.380140205 8.391410013 8.66025508 8.673906442 8.3223589 8.451516696 8.522453485 8.336582766 27354359 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.775072828 7.472123178 7.328170609 7.649029832 7.473011114 7.286078812 7.573182658 7.202417275 142849981 CopA Metal Resistance Copper Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 9.213451268 8.4963476 8.582852187 9.063296207 9.05835047 8.934109367 9.311034006 9.026217453 8.816453825 9.068212369 9.157867064 8.906534161 170653968 Arylest Organic Remediation Aromatics Other aromatics Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 9.387416179 8.936260102 8.894995138 8.841741309 8.786429133 8.645533852 8.927577462 8.865948127 8.801543104 8.765753231 8.804351889 8.903493366 39935070 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.337495474 8.333531878 8.669538231 8.531650842 8.802233244 8.284225325 8.575808877 8.943017621 8.684576682 9.008516156 8.909721944 9.117693388 66044054 pilin virulence pilin Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 8.132077235 8.216498623 8.174649569 7.563439917 7.559435439 7.757891916 7.883645277 7.626127186 8.214854594 7.82918151 7.519109042 7.877438864 148500012 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.975172287 8.973197515 9.038224326 8.400448865 8.421014183 8.464026888 8.8158925 8.174244617 8.931426183 8.494426774 8.153262704 8.776608936 240103081 ahpF Stress Oxygen stress Thermococcus gammatolerans EJ3 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus gammatolerans; 8.48548709 8.816430146 8.633682906 8.009360895 8.258242077 8.709001138 8.812175792 8.765867602 8.838670778 8.845246972 8.880145597 9.045072321 198276183 cda Carbon cycling Carbon degradation Starch Bacteroides plebeius DSM 17135 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides plebeius; 8.482646896 8.252623886 8.340181686 7.717365473 7.316642423 7.445555165 7.308076971 6.964111988 7.254683644 7.312593688 7.602443921 23326899 ara Carbon cycling Carbon degradation Hemicellulose Bifidobacterium longum NCC2705 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 8.615441075 8.642904705 8.578733929 8.2790797 7.8751416 8.140685591 8.058080613 7.655851376 7.888857861 7.914587115 8.115864687 134288314 glnA Stress Nitrogen limitation Burkholderia vietnamiensis G4 9.691423454 9.604047602 9.722750124 8.868445257 8.88613964 8.99770765 9.01397441 8.633028046 9.028855883 9.052590771 9.038266894 9.186470297 62512267 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.342557157 8.665364233 8.772911055 8.778418752 9.122311545 8.987236708 9.066074561 9.120659807 8.919651541 9.298101533 9.348312698 9.162079781 125862616 pstB Stress Phosphate limitation Methanoculleus marisnigri JR1 8.595593127 8.775405791 8.962511547 8.417951788 8.15523089 8.184116516 7.896646034 8.320978213 8.315711433 8.361839533 8.626085838 29293589 gyrB other category gyrB Mesoplasma photuris superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Entomoplasmatales;family:Entomoplasmataceae;genus:Mesoplasma; 8.244336884 8.165486411 7.559358057 7.541599047 7.511641822 7.369549955 7.273573314 229766499 narI Stress Oxygen limitation Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 8.480450011 8.622109453 8.641410104 8.360239952 8.390765283 8.344644015 8.543435901 8.574374245 8.786074099 8.383845053 8.175483457 8.37206969 118761912 nitA Organic Remediation Aromatics Other aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 12.08622997 11.96060416 11.98632586 11.12619517 10.88186595 11.17145682 10.94870954 10.83625539 11.45649004 11.08523549 11.12068658 11.25334316 89046125 nagG Organic Remediation Aromatics Aromatic carboxylic acid Oceanicola granulosus HTCC2516 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 9.268682863 9.186286449 9.188664723 8.67504732 8.76079735 9.023202148 8.771749057 8.612459688 8.997401407 8.699242162 8.732662382 8.801358845 167590448 ahpC Stress Oxygen stress Burkholderia ubonensis Bu superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ubonensis; 8.321425218 8.531287202 8.476656328 8.5698187 8.673122556 8.510601593 8.691762445 8.541905768 8.777858175 8.509777968 8.043847322 24351001 vip virulence virulence protein Shewanella oneidensis MR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella oneidensis; 8.141829695 8.223670851 7.913654065 7.816984913 7.864445163 7.493031431 7.649185292 8.045944298 7.548850552 7.922975221 7.476032553 259168964 obgE Stress Radiation stress Lactobacillus antri DSM 16041 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus antri; 8.713220967 8.864005286 8.645717651 8.365739155 8.375595256 8.486545232 8.261343629 8.840349415 8.629041745 8.854595531 8.971015827 8.934433429 262193712 ahpC Stress Oxygen stress Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Haliangiaceae;genus:Haliangium;species:Haliangium ochraceum; 8.726021411 8.665486597 8.326951353 8.194066318 8.126133653 8.212955997 8.454581781 8.208767599 8.291711117 8.289456787 8.310881538 46198234 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Exophiala lecanii-corni superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Chaetothyriales;family:Herpotrichiellaceae;genus:Exophiala; 8.934974257 8.843413316 9.055279789 8.313225034 8.268903978 8.253070249 8.469556515 7.964039241 8.435949427 8.146003181 8.035866604 8.349768213 142852981 endochitinase Carbon cycling Carbon degradation Chitin Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 9.466419584 9.191267604 9.376046837 9.432609468 9.459567571 9.696081885 8.44634855 9.771208458 8.968658022 8.905195654 9.197921219 29652474 narG Nitrogen Denitrification uncultured bacterium 9.72370478 9.437324871 9.216702898 9.320439836 9.172153451 8.961870341 9.550246027 9.435123732 9.344792642 9.224766758 9.125473417 9.106893268 126727408 sox Sulphur Sulphur oxidation Rhodobacterales bacterium HTCC2150 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 10.84261923 10.56206722 10.856917 10.12925582 10.07436506 9.962778884 10.14222831 9.889108808 10.44978638 10.24016064 10.30415498 10.15806677 115259176 atzA Organic Remediation Herbicides related compound Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.987463195 8.261417632 7.532901742 7.435172964 7.499442033 7.197368604 7.107622538 7.719042832 7.495490849 7.288988943 7.735545721 227486270 nplT Carbon cycling Carbon degradation Starch Anaerococcus lactolyticus ATCC 51172 7.996341541 8.007133195 6.906979336 6.862430145 7.336753233 86570649 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.139096652 8.973257486 9.008720368 9.012774287 8.969255324 8.67112825 9.033308058 8.868637095 8.844360156 9.00795179 9.007737295 8.469984216 146408830 TerC Metal Resistance Tellurium Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.664650578 8.84189576 8.571142057 8.741326104 8.634865246 8.512603169 8.679699417 8.768550579 8.56392397 8.548229147 8.759247449 8.425644874 118169831 katA Stress Oxygen stress Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.313054972 8.181725622 8.029657936 7.88164735 7.906497288 8.130092114 8.355872821 8.346817641 8.23369441 190996028 ppx Phosphorus Phosphorus utilization Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.420007819 8.499894257 8.468643574 7.608653463 7.81221358 8.223646583 8.281378107 7.724417792 8.380001061 7.701098949 7.69780271 8.116578408 83845803 nhh Organic Remediation Aromatics Nitoaromatics Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 8.652766433 8.414965915 9.237662962 8.781988946 8.83084947 8.518020882 8.940609916 9.107329336 8.797271904 9.173015129 9.167693036 9.00857168 260773413 pstS Stress Phosphate limitation Vibrio metschnikovii CIP 69.14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio metschnikovii; 8.190457669 8.080318372 8.257927737 7.493999934 7.15912955 7.506791716 7.120767102 7.276546079 7.130649926 7.141615464 7.460146181 111282984 ureC Nitrogen Ammonification Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 8.859578957 8.422191649 8.247154754 8.296135396 8.524695741 7.777642887 8.397520272 8.226962362 8.003947234 8.438583396 78694144 gyrB other category gyrB Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.924447754 9.297894263 8.987216509 8.631586343 9.804126229 9.909791359 9.453205144 9.782176255 9.50506951 9.454535878 9.701573485 126717282 hrcA Stress Heat shock Roseobacter sp. CCS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.403407762 8.463884181 8.143038144 8.895653373 8.740497025 8.572467686 8.899709947 8.970776483 8.518459562 8.622223109 8.772550232 8.701960383 88810692 amyA Carbon cycling Carbon degradation Starch Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 7.56552418 7.652513642 7.727336016 7.060627567 7.284653849 7.637270917 7.133458538 7.480216223 183176781 linB Organic Remediation Pesticides related compound Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 9.506745985 9.50295173 9.499322524 8.922216388 9.000767915 9.00645436 8.912526976 8.784984309 8.925417507 8.926164034 8.746018477 9.076787792 241365355 hly virulence hemolysin Acidovorax delafieldii 2AN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax delafieldii; 8.290996269 8.078727489 7.915452919 7.823149706 7.482586077 7.521911546 7.807725408 8.207738715 7.9113299 7.618607059 7.699331054 148261842 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 8.77462014 8.890309254 9.15948788 8.892359055 9.087277642 8.713395396 8.573851555 8.941194538 8.487452904 8.94978807 8.859382335 8.893182833 220919127 AceB Carbon cycling Carbon degradation others Anaeromyxobacter dehalogenans 2CP-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 9.132866747 8.666115547 8.834719658 9.20685308 9.21189946 9.113873172 8.906940495 9.484091918 9.069583318 9.032804564 8.899973693 9.145968959 32364162 gyrB other category gyrB Actinobacillus lignieresii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus; 8.045540314 8.445746754 7.339808685 7.183683101 7.401468606 7.06631575 6.832377531 7.685954654 7.305821144 7.019545447 7.524487137 124266069 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 8.549673405 8.250791159 8.419242704 8.281258952 8.493980954 8.539989539 8.278626271 7.633585054 7.826446368 8.067320586 162451220 phoB Stress Phosphate limitation Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 8.410073887 8.382302487 8.197764364 8.208803599 8.316537137 7.761081018 8.396640307 8.380976552 8.575488173 7.955549647 148474738 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 8.151402594 7.847948971 8.315084818 8.031262965 8.40237731 8.237168418 7.980849074 8.575628425 8.087302858 8.473707215 8.313160987 8.475191978 283474117 cap virulence capsule Xanthomonas albilineans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas; 8.646750145 8.377147181 8.917578293 8.794291437 8.792877132 8.841651135 9.108978947 9.124998874 9.017189299 8.871729618 9.049931351 262395663 proX Stress Osmotic stress Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.491337865 8.566900421 8.571767172 8.322175311 8.295704657 8.369597011 8.64722799 8.735167972 8.398320658 8.742147508 8.808527797 8.659130961 72121063 pcc Carbon cycling Carbon fixation Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.187695348 8.077417256 7.825894229 8.101399422 7.78458129 8.036900362 8.058262351 7.752668385 7.906959981 7.305084049 212637312 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 8.411786104 8.296767999 8.654960509 7.828411294 7.557229561 7.784994862 7.396188761 7.438692302 7.672587958 7.502942934 7.617721237 7.848592026 116222990 sigma_24 Stress Sigma factors Candidatus Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 9.077867567 8.89787347 9.030132186 8.704083747 9.038606085 8.939309627 8.47202547 9.033517485 8.573540695 8.815460487 8.746179548 8.894060443 149677 katE Stress Oxygen stress Listeria seeligeri superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria; 9.24203177 9.26720439 9.412159544 8.552355683 8.44247242 8.471905302 8.246680368 8.061651249 8.352167135 8.396915985 8.606453297 256371066 sigma_70 Stress Sigma factors Acidimicrobium ferrooxidans DSM 10331 8.147467888 8.62238926 8.383821713 7.677669608 7.349334507 7.988516456 7.979310043 7.74305368 7.789962979 7.734779553 7.775725555 192808121 ChrA Metal Resistance Chromium Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.425691037 8.589837533 8.912198013 8.138230776 7.891339011 7.692448367 7.612276079 7.844388348 8.052389657 7.931512015 7.608521493 7.947341531 120405615 hly virulence hemolysin Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.547454411 8.340562371 8.49582621 8.376562675 8.218366207 8.21128851 8.027220328 7.85372385 7.964265107 7.98890766 8.275849752 146409840 BchY other category chlorophyllide reductase Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.290461591 8.81207767 8.413851186 8.107709743 7.98391673 8.434882724 9.086735519 8.528755155 8.913284413 8.329038911 8.344172859 8.425000543 192764492 narG Nitrogen Denitrification uncultured bacterium 8.79412282 8.857859754 9.162114393 8.349444819 8.427372667 8.660515589 8.962117629 8.193395943 9.108766414 8.249380963 8.448912019 8.39941441 145702330 antioxidant Bioleaching Metal Resistance Metallosphaera sedula DSM 5348 8.635464102 8.388430902 8.062761892 7.906985074 7.845953979 7.713937913 7.895535223 8.237539017 7.766797163 7.750734254 7.981433017 114308262 iro virulence Nitrosomonas eutropha C91 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas eutropha; 8.953099961 8.649887434 9.090562046 8.535292458 8.273939176 8.239503789 7.858424647 7.611186634 8.588238548 7.660008567 7.748250398 8.187858573 84665743 ppx Phosphorus Phosphorus utilization Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.143781462 8.208880731 8.213496047 7.504651499 7.66440264 7.78091038 7.940657965 8.002396319 8.283870178 8.006854058 8.172740568 179346860 sox Sulphur Sulphur oxidation Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 9.056484934 8.984515918 9.120584668 8.509976501 8.604189313 8.563553462 9.194374006 8.484224944 8.744599175 8.799516024 8.830766518 110668150 nirA Nitrogen Assimilatory N reduction Haloquadratum walsbyi DSM 16790 8.6337721 8.903164888 8.824440283 8.974561443 8.384595328 8.442777571 8.126877474 151302260 APS_AprA Sulphur adenylylsulfate reductase Desulfonema limicola superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfonema; 8.194281705 8.397237579 8.613771939 7.953914757 8.015179919 7.698941582 7.902140207 8.086315866 8.008756366 8.235895282 7.958622734 8.253589979 190891402 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.812786411 8.877559516 9.05606457 8.345008606 8.294345946 8.753681032 8.793728796 8.51457382 8.931232559 8.83710196 9.015457519 8.936113353 88189673 pstB Stress Phosphate limitation Methanospirillum hungatei JF-1 7.677465826 7.422448424 7.428590873 6.964024319 7.688387201 7.342717065 7.607830447 89900754 dnaK Stress Heat shock Rhodoferax ferrireducens T118 9.57449451 9.395713794 9.505252216 8.477551694 8.528019076 8.308066432 9.2733073 8.56515243 8.982375409 8.986518485 9.042047348 9.144078312 60476340 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 9.406347603 9.215549147 9.319600338 8.776534108 8.638198888 8.613058306 8.307303774 8.298077687 8.509532443 8.45555195 8.425856778 8.666425995 221563713 sigma_24 Stress Sigma factors Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.920346258 9.218529053 9.154292604 8.292026208 8.614239904 9.032839601 9.594423227 8.983346153 9.653259898 8.749599784 8.462215464 8.886745228 93006081 linB Organic Remediation Pesticides related compound Psychrobacter cryohalolentis K5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter cryohalolentis; 8.187816045 8.146760934 7.307580178 7.234201013 7.614348525 7.407900336 7.115728785 7.875516209 7.3553617 7.192293062 7.211772211 118501813 sigma_32 Stress Sigma factors Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 8.41827473 8.50260599 8.644795898 7.763150418 8.044920583 8.433868176 7.823154545 7.88096544 7.584907503 7.950856604 124900937 B_lactamase_C Antibiotic resistance Beta-lactamases Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 8.514523222 8.575599477 8.28561556 8.378622168 8.333207398 8.205630869 8.466582836 8.444268759 8.474358229 8.45736113 8.556750801 8.228160678 187766740 endoglucanase Carbon cycling Carbon degradation Cellulose Trichoderma viride superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Trichoderma; 9.038064635 9.053851238 9.098901024 8.798066341 9.105079967 8.881584215 8.999268625 9.351445545 8.671990551 9.495759293 9.315386973 9.227603731 220710578 CopA Metal Resistance Copper Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 9.099358499 8.971881961 8.998689072 8.59405301 8.616289867 8.265250979 8.475492536 9.064116048 8.39103303 8.931914434 8.783513649 8.917515687 169760711 iro virulence Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.622117413 8.693172433 8.464278184 8.174885257 8.000572979 7.750639369 8.009220233 7.797646785 7.835102494 7.663547786 8.166705396 87198562 cbdA Organic Remediation Aromatics Chlorinated aromatics Novosphingobium aromaticivorans DSM 12444 8.633090273 8.79646056 8.445321367 8.240371749 8.406512256 8.204012029 8.269562987 8.531370829 8.625788194 8.680066713 8.37923527 8.503617983 109660038 ureC Nitrogen Ammonification unidentified bacterial contaminant superkingdom:Bacteria; 8.049694688 8.561963664 8.184822794 7.726108198 7.731155719 8.288247381 8.390130153 7.885974188 8.572200094 7.628637463 7.636520456 7.717899264 197756962 CopA Metal Resistance Copper Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.749321029 9.037083409 8.999901405 8.590925554 8.608011599 8.674512947 8.907727904 8.63242428 8.43963442 8.610273467 8.700212747 8.801262666 161163310 gyrB other category gyrB Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 8.934334529 8.578374356 9.00738227 9.082590276 8.844421991 8.631026043 8.794491478 8.791610237 8.653343062 8.768203385 9.279684676 8.543601393 262173468 amyA Carbon cycling Carbon degradation Starch Vibrio mimicus MB-451 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 7.991117507 8.031585556 7.39800772 7.318376639 7.228060876 6.912534551 6.692064694 7.135927301 7.419410236 7.587746914 21224917 linC Organic Remediation Pesticides related compound Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 9.482639366 9.811874272 9.826468552 9.086491959 9.849952477 10.11306704 9.60689565 9.934392368 9.646558132 9.495167018 9.693682177 222440675 ureC Nitrogen Ammonification Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 8.164542484 7.853593286 7.68000388 7.614397994 7.518828269 7.354828354 7.695197949 7.718551367 7.436977232 7.412764531 7.593972513 77464852 fnr Stress Oxygen stress Rhodobacter sphaeroides 2.4.1 9.114227592 9.12707006 9.1873403 8.757499351 8.583860476 8.517752655 8.616773013 8.651653943 8.494418156 8.630708153 8.594776019 8.875977368 193224935 sox Sulphur Sulphur oxidation Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 8.632288374 8.972404967 9.00521224 8.127517136 8.469094203 8.808073854 9.19021596 8.529091656 9.078006823 8.679525973 8.864735152 8.790838604 126727075 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.804947928 9.016000395 9.260619699 8.620011452 8.34972861 8.200611077 8.04337452 7.721565051 8.190347903 8.276632308 8.218405559 219952794 pheA Organic Remediation Aromatics Other aromatics Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 9.063573506 8.509254656 9.047854092 8.665134941 8.427668312 8.268098398 8.520942082 8.438926828 8.674139588 8.402960344 8.562225505 8.265727083 255951272 endochitinase Carbon cycling Carbon degradation Chitin Penicillium chrysogenum Wisconsin 54-1255 8.325306847 8.194289905 7.41909149 7.449118825 7.819102963 8.239176686 7.717189794 7.846747106 7.971923964 8.010895801 87281207 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.151527812 8.502098554 8.349317115 8.160465398 8.003784149 7.896438891 8.254001274 8.640638755 8.635429954 8.450188253 8.586429638 169631446 bphA Organic Remediation Aromatics Polycyclic aromatics Mycobacterium abscessus 8.659835801 8.123421204 8.750978598 7.909641849 8.130497951 7.985313163 7.687818358 7.703056058 7.998438945 7.638760742 7.665953812 8.108310024 110826492 APS_AprA Sulphur adenylylsulfate reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.959435373 8.089780109 7.766529707 7.826331504 7.46476455 7.403228851 7.754279793 8.114736732 7.665864971 7.727644702 7.730913491 158142077 Van Antibiotic resistance other Alkaliphilus oremlandii OhILAs superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus oremlandii; 8.407980076 8.446799134 8.51185275 7.816039325 7.679518128 7.777438911 5453414 pectinase Carbon cycling Carbon degradation Pectin Colletotrichum gloeosporioides f. sp. malvae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;family:Glomerellaceae;genus:Glomerella;species:Glomerella cingulata; 8.703844458 9.004200591 8.569601101 8.696196234 9.077140367 8.885608248 9.280453755 8.826807061 8.719723204 8.7117114 9.022094326 8.489278755 280966603 sigma_70 Stress Sigma factors Frankia sp. EuI1c superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.677572826 9.03578092 8.601306181 9.232235037 9.084441323 8.813997497 9.33918445 9.281647926 8.735014047 9.160769594 9.364580412 8.832327585 110819594 ChrA Metal Resistance Chromium Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 9.215758759 8.547372598 8.609335558 9.519741207 9.297471717 9.049221239 9.460397882 9.242795688 9.198095138 9.21730934 9.205372645 9.063761311 198257424 B_lactamase_C Antibiotic resistance Beta-lactamases Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 8.255907067 8.406050638 8.269397349 8.779177628 8.511662317 8.638494954 8.324466861 8.275306757 8.342938756 158443087 glnA Stress Nitrogen limitation Faecalibacterium prausnitzii M21/2 8.793981163 8.965735474 8.815891577 8.107979185 8.16892035 8.342724312 7.908809786 8.071504052 8.25206015 8.423281246 8.279964744 256741002 sigma_70 Stress Sigma factors Thiomonas intermedia K12 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas;species:Thiomonas intermedia; 8.257290767 8.475278568 8.679041772 8.202345219 8.136315018 8.045588987 7.978397352 8.167462312 7.975905164 8.109949657 7.842027328 117959699 phenol_oxidase Carbon cycling Carbon degradation Lignin Ganoderma tsugae superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Ganodermataceae;genus:Ganoderma; 8.590697363 8.628984655 8.882879303 8.278167953 8.136402121 7.968127269 7.810039757 7.645083131 8.152426609 7.816366847 7.651974682 8.099707604 269790602 obgE Stress Radiation stress Thermobaculum terrenum ATCC BAA-798 superkingdom:Bacteria;genus:Thermobaculum;species:Thermobaculum terrenum; 8.976868931 9.163589072 9.096052023 8.420839334 8.436676712 8.371149365 8.229708768 8.302125472 7.988909363 8.321355957 8.311106694 8.73223586 239982200 sigma_24 Stress Sigma factors Streptomyces albus J1074 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces albus; 8.499335192 8.479546265 8.568426187 8.521588808 8.497636531 8.364185762 8.419957622 8.367927332 8.614649768 8.488522199 8.444846278 8.209574759 256645712 katE Stress Oxygen stress Acetobacter pasteurianus IFO 3283-26 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pasteurianus; 8.293971638 8.295731465 8.246379129 7.596826681 7.51042214 7.652082934 7.785527783 7.685366479 8.130049047 7.421815526 7.368719506 7.705787073 78224356 cytochrome Energy process Energy process Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 7.686707785 7.428616595 7.651609537 7.503472009 7.229853607 7.64396678 7.509542428 7.718555076 119374403 proV Stress Osmotic stress Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 9.806395717 9.850764872 9.771261356 9.321459235 9.427999787 9.15149615 9.985965798 9.999124089 9.874673249 9.745398245 9.545590386 9.615876181 260457516 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 9.695983466 9.848813213 9.981599389 9.378196351 9.303052852 9.26974056 9.064578511 8.933510238 9.402966709 9.411569479 9.26304981 9.483650774 83313596 hrcA Stress Heat shock Magnetospirillum magneticum AMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 8.793316438 8.837873606 8.902357562 8.738238173 8.377576823 8.696284896 8.979141584 8.757324746 9.040038931 8.688697234 8.712356348 8.41924225 56680167 linC Organic Remediation Pesticides related compound Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 9.082014377 9.130866693 8.692112263 7.949536226 7.888786803 8.277068761 8.480018549 7.98510226 8.632781485 8.183298651 8.049400871 7.945079878 223482830 ChrA Metal Resistance Chromium Brevundimonas sp. BAL3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas; 8.547140314 8.662984359 8.453794943 8.222660216 8.434622431 8.30927534 8.949862775 8.652879 8.607192829 8.283764879 8.590702911 8.638776474 66801931 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 8.523233031 8.212515978 8.159912572 8.264683603 7.756894167 7.635631882 8.068904236 8.162693495 8.371927679 8.146814523 7.984690596 7.483881983 114308703 Arylest Organic Remediation Aromatics Other aromatics Nitrosomonas eutropha C91 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas eutropha; 8.279656624 8.088295268 8.198436753 7.7722428 7.549632703 7.957738737 7.875855188 7.75823288 7.673533737 7.413952352 7.90466858 83840341 trzN Organic Remediation Herbicides related compound Sulfitobacter sp. NAS-14.1 8.001075498 8.179814927 8.120957471 7.583973238 7.705370193 7.46946604 7.681277346 7.67691902 7.938289429 7.390806664 7.571236095 7.622713259 163796122 glnA Stress Nitrogen limitation alpha proteobacterium BAL199 8.346779191 8.183076016 8.389910114 8.196095506 7.851980598 8.306079877 8.708677794 8.47027714 8.392976331 8.222261686 8.305665784 15157168 ChnA Organic Remediation Other Hydrocarbons Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 9.961615276 9.847933271 10.03558076 9.546108293 9.571297593 9.230350226 9.44468637 9.538636758 9.926384444 9.758793537 9.810987096 9.762360408 218887652 pstC Stress Phosphate limitation Desulfovibrio vulgaris str. 'Miyazaki F' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 9.520397486 9.352745604 9.526207317 9.080006347 9.098061394 9.022738114 8.866397379 9.103057756 8.827688896 9.001239683 9.005079547 9.419463278 113933512 tfdA Organic Remediation Aromatics Chlorinated aromatics Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.597394652 8.808393154 8.639028467 8.288300635 8.322041373 8.169868819 8.682899876 7.933101965 9.006507808 7.915418191 7.634876318 8.039539534 269306796 arsM Metal Resistance Arsenic Xylanimonas cellulosilytica DSM 15894 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Xylanimonas;species:Xylanimonas cellulosilytica; 8.422007123 8.565794018 8.363269817 8.405196445 8.238353886 8.392024785 8.728749537 7.529063838 8.736454214 7.863530897 7.800753814 8.102849812 157082129 nagL Organic Remediation Aromatics Aromatic carboxylic acid Citrobacter koseri ATCC BAA-895 9.203957223 9.203726959 9.362270072 8.831494151 8.770080063 8.760182426 8.586841498 8.740325514 8.688732435 8.683976908 8.928956815 118469153 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.363712151 8.325559978 8.160242697 8.005935389 7.690715087 7.832990887 8.299199148 7.773438835 7.894594458 7.910178714 7.879671054 7248705 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces peucetius superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 9.629520797 9.350730743 9.609371099 9.628352178 9.633602248 9.614939117 9.294477374 10.03579982 9.080877149 9.784120916 9.702397873 9.922576984 27348949 ZntA Metal Resistance Zinc Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.699787639 8.617835703 8.288720082 8.097433579 8.367694368 8.563022704 8.483893214 8.202254493 8.906393372 8.265767219 8.116399242 8.272378209 119670334 sigma_24 Stress Sigma factors Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 9.108618555 9.103501399 9.261799669 8.629574188 8.584272312 8.482890479 8.275185496 8.106593792 8.574705526 8.304249223 8.12942421 8.508783502 119376796 PobA Organic Remediation Aromatics Aromatic carboxylic acid Paracoccus denitrificans PD1222 8.123598933 7.974437838 8.126550964 7.754080786 7.739339516 7.752661719 7.851881839 7.925849911 8.16681439 7.966757719 7.916999016 8.057415259 82700177 ureC Nitrogen Ammonification Brucella melitensis biovar Abortus 2308 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Brucella;species:Brucella abortus; 8.287495635 8.192132185 8.095862492 7.952218393 8.085268568 7.884213477 8.435656636 8.42952512 8.350610094 8.13953688 90415583 vanA Carbon cycling Carbon degradation Others marine gamma proteobacterium HTCC2207 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.389852745 7.08515224 7.323258761 103487991 mer Metal Resistance Mercury Sphingopyxis alaskensis RB2256 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 8.708021943 8.951867882 8.902744743 8.383597307 8.577186961 8.534810573 8.640405976 7.854716498 8.83664592 8.108418124 8.317324898 8.485224334 119369962 gyrB other category gyrB uncultured bacterium superkingdom:Bacteria; 9.178502506 8.979430403 9.219837467 8.520332801 8.700971549 8.408848529 8.439371244 8.600894825 8.39108233 8.580261667 8.531494987 8.801726026 218288994 AceA Carbon cycling Carbon degradation others Alicyclobacillus acidocaldarius LAA1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 8.185189457 8.190578558 8.17000778 7.955862296 8.176229223 8.227877217 7.869467224 8.217320731 7.617485274 7.881162339 7.777592535 50084612 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Acinetobacter sp. ADP1 8.728504416 8.827771661 8.715129136 8.471286122 8.291685635 8.193616569 8.258615272 8.084862416 8.477631614 7.984387322 7.888512437 8.287024158 198283243 sigma_24 Stress Sigma factors Acidithiobacillus ferrooxidans ATCC 53993 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 9.955594627 9.591455514 9.68490527 9.254970365 9.199694633 9.146634532 9.117529292 9.186958714 9.360436968 9.472905844 99082078 bclA Organic Remediation Aromatics Aromatic carboxylic acid Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8.632935584 8.749526666 8.925657871 8.582548398 8.374002669 8.062874715 8.69061658 8.873495236 8.716801902 8.752010671 8.81507308 9.055215385 38427028 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.750728511 8.376462982 8.460976318 8.037419887 7.833614623 8.102773166 8.203645628 7.674991732 7.861164135 7.852451809 8.197738062 194566416 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia dolosa AUO158 9.585373581 9.504923939 9.093621414 9.253946398 9.195972515 9.011258043 9.471679196 9.367235746 9.116410655 9.446566288 9.41911109 9.324655198 86138268 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.65237334 8.652369488 8.840999291 8.291988814 8.31896559 8.232916812 8.270217535 8.163629217 8.53779101 8.033610039 8.208169989 8.231218496 16081313 ahpC Stress Oxygen stress Thermoplasma acidophilum DSM 1728 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermoplasmata;order:Thermoplasmatales;family:Thermoplasmataceae;genus:Thermoplasma;species:Thermoplasma acidophilum; 8.346751073 8.309905214 8.375596445 8.479823475 8.666787487 8.703150692 8.152428646 8.933074911 8.059443602 8.86028611 8.982345623 8.79173232 145221947 bphA Organic Remediation Aromatics Polycyclic aromatics Mycobacterium gilvum PYR-GCK 8.917159864 9.067213334 9.379431096 8.88661285 9.053987998 8.724095419 9.189794781 9.693629407 9.378076496 9.876717778 9.707047354 9.802300012 3378405 bphB Organic Remediation Aromatics Polycyclic aromatics Novosphingobium aromaticivorans 8.440565217 8.129020116 8.36286564 8.036434929 7.928905267 7.797525954 7.832178897 8.139915196 8.283649551 7.772588954 7.712364854 7.79946711 78223773 cytochrome Energy process Energy process Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 8.317981446 8.320341484 8.066727047 7.978027461 8.15030649 8.082229922 8.700806972 8.597187715 8.194550007 8.391288619 163744186 fnr Stress Oxygen stress Oceanibulbus indolifex HEL-45 7.713405614 7.618123997 7.388323363 7.308325031 7.103557928 7.868001083 7.508505655 7.348975945 7.438493004 41409185 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 8.201409827 7.932160803 8.074237342 7.744512189 7.782149574 7.720283632 7.565544662 7.853927489 7.883202185 7.914073271 7.951924761 7.827612392 162955253 hly virulence hemolysin Renibacterium salmoninarum ATCC 33209 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Renibacterium;species:Renibacterium salmoninarum; 10.40859555 10.35604309 10.83276911 10.64158131 10.4542432 10.02445028 10.48403557 10.83263819 10.52885058 10.79768233 10.65746686 10.9592574 78484155 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces sp. AJ9463 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.238073103 8.493348938 8.446499613 8.098564112 8.11208159 8.045842544 8.350104832 8.405767641 8.196283703 8.26776603 8.101982956 7.677736537 225194053 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.467444467 8.188806715 8.256097902 8.30526385 8.385105799 8.304921414 7.956764911 8.211342025 8.071826905 7.860427262 7.697127526 78521973 nasA Nitrogen Assimilatory N reduction Alkalilimnicola ehrlichei MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 8.775187618 8.4331574 8.722613537 8.552654091 8.096924106 8.268915883 8.44389426 8.268526135 8.316658268 8.086698883 8.251466044 110823428 ahpC Stress Oxygen stress Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.852743891 8.973754088 8.848306644 8.424094425 7.896314873 8.475421412 8.800272741 8.357863657 8.680738662 8.589711692 8.652823847 8.611149262 88785780 cda Carbon cycling Carbon degradation Starch Robiginitalea biformata HTCC2501 8.727308478 8.423810062 8.927321554 8.008142513 7.846103621 8.151148246 8.009943376 7.857092283 7.915986679 7.942803315 7.65143005 8.181572134 219676739 nagK Organic Remediation Aromatics Aromatic carboxylic acid gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.325105929 8.360058325 8.662393657 8.085095254 8.049819662 7.815774952 7.355238307 7.267944455 8.018252443 7.643435972 7.466783731 7.850295996 118659653 silC Metal Resistance Silver Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 8.452950781 8.446384512 8.543901187 8.428805683 8.161407485 7.780507189 7.99722316 8.03261482 7.978254595 8.174015141 7.930252993 157368458 CadA Metal Resistance Cadmium Serratia proteamaculans 568 9.5952521 8.60059911 9.08747929 8.619906482 8.969034929 9.038777176 8.739488182 8.77601053 8.923576753 8.717447489 9.038140015 8.697560401 133737265 SMR_antibiotics Antibiotic resistance transporter Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 8.354324889 8.207509742 8.292408757 8.267891211 7.997616217 8.28854558 8.254511176 8.316600832 8.499034466 8.109513185 7.830537967 225027353 ABC_antibiotic_transporter Antibiotic resistance transporter Eubacterium hallii DSM 3353 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium hallii; 9.249985831 9.015002867 9.467509669 8.877001487 8.708364064 8.601989764 9.019998592 9.274760568 8.995043288 9.128348992 8.948495871 9.201455234 110589044 APS_AprB Sulphur adenylylsulfate reductase Endoriftia persephone 'Hot96_1+Hot96_2' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Endoriftia;species:Endoriftia persephone; 8.617621499 8.492005632 8.662907221 8.726843747 8.832638481 8.692010079 8.578851485 9.018769942 8.54012311 8.84869793 8.807471304 9.038687292 144906068 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9.03180745 8.610661648 9.100324808 9.333678978 9.091456027 8.543788997 8.44123201 8.248318655 8.495096456 8.527410505 8.417082609 8.249428506 56962051 ZntA Metal Resistance Zinc Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 9.352906552 9.311170419 9.037302811 8.713995642 8.552931718 8.835629274 8.844115852 8.529440803 9.165578697 9.003083927 9.001289473 8.894940667 108765414 fnr Stress Oxygen stress Rubrobacter xylanophilus DSM 9941 9.857726495 9.746596171 9.86810099 9.190988464 9.143881501 8.984379529 8.981353624 8.897520876 8.971418182 9.029957569 9.095153845 9.346772571 110825109 tphA Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.716874667 8.578717503 9.009547601 9.196024501 9.173872409 8.92201752 8.792244212 9.186190326 8.772283988 9.349628298 9.068448644 9.30433226 85672174 mer Metal Resistance Mercury Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.588123841 7.458877506 7.779970127 7.579429951 7.515614877 7.779790477 7.69520733 7.585890633 7.638354726 219676341 fnr Stress Oxygen stress gamma proteobacterium NOR5-3 8.873685651 9.069090493 9.285390455 8.995847651 9.199536989 9.200820819 9.355908631 9.524084263 9.432883722 9.018471897 9.45960864 9.151270496 4633555 nosZ Nitrogen Denitrification uncultured bacterium ProB superkingdom:Bacteria; 8.649064133 8.609885987 8.267471923 7.891789307 8.334736434 8.443213662 8.664143753 7.668689939 8.346877943 7.813688284 8.025754389 8.231363736 169240975 glnA Stress Nitrogen limitation Mycobacterium abscessus 8.678372837 8.880218379 8.906122006 8.566969252 8.538191158 8.463670104 8.216004486 8.338921058 8.583323694 8.630408177 8.683495764 8.68960834 95112556 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae; 8.938798781 8.988007287 8.640604715 8.344986894 8.621277 8.336559262 8.129352238 8.251968929 8.482932783 8.574183667 8.287349749 116742196 endochitinase Carbon cycling Carbon degradation Chitin Listeria welshimeri serovar 6b str. SLCC5334 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria welshimeri; 8.300719724 8.213459373 8.381537918 8.098878228 7.878477117 7.694295984 8.076207051 8.063789068 8.244682854 8.137271747 7.88536542 7.939231124 165880027 exoglucanase Carbon cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 8.429568296 8.311078367 7.513911725 7.950862618 8.192533941 7.69213066 7.901493553 8.031112969 7.805240218 8.31053774 7.721252979 145233815 Catechol Organic Remediation Aromatics Other aromatics Aspergillus niger 8.791121499 8.382638794 8.523650978 8.724718486 8.589646675 8.403759531 8.551902071 8.593044621 8.332562016 8.603813185 8.612064908 8.225782911 115374256 vanA Carbon cycling Carbon degradation Others Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 8.885904674 8.935072963 8.910278856 9.155775166 9.087470194 8.902583695 9.26551222 9.143244757 9.098205996 9.211615141 9.230778957 8.602302836 194365086 pstB Stress Phosphate limitation Stenotrophomonas maltophilia R551-3 9.129653732 9.033122453 9.059116012 9.925948623 9.923207438 9.511985591 9.156438028 9.832376642 9.289598915 9.494974433 9.408948673 9.468944959 66044753 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 9.512488145 9.548393253 9.613067246 8.82186033 8.701685608 8.591472651 8.41939213 8.316310083 8.649975931 8.626228939 8.653222093 8.864761694 124516461 GAPDH Bioleaching Carbon fixation Leptospirillum sp. Group II UBA 8.617542933 8.578846661 8.613584684 8.0640966 8.010992673 8.143496954 7.71854478 7.701572519 7.949707357 7.69355214 8.17443105 110224990 gyrB other category gyrB Streptococcus mitis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 8.732287472 8.529827167 8.581847386 8.140319667 7.93704973 8.097075711 7.887900541 7.791774519 7.929923171 7.547619804 7.913960857 8.08003754 152978706 CopA Metal Resistance Copper Actinobacillus succinogenes 130Z superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus succinogenes; 8.64947923 9.251983451 8.946836348 8.429326289 8.284615845 8.557498802 9.220530301 8.687852653 8.740939351 8.191325429 8.404514066 8.234385059 197765725 TerD Metal Resistance Tellurium Streptomyces sp. SPB74 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 10.01310873 9.925027285 9.953907606 9.328721833 9.279887214 9.203117384 9.166504184 9.296170133 9.146024418 9.258461524 9.307634905 9.583644261 152979769 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 8.427774015 7.987599156 8.156185378 7.919603513 7.774563855 7.655280014 8.018020395 8.266727021 7.931422124 7.77674291 7.752061222 73749240 PceA Organic Remediation Others Dehalococcoides sp. CBDB1 9.034437408 9.076942426 9.209818294 8.48993567 7.89567224 8.207497796 8.265252659 8.045228383 8.024985611 8.311309179 8.142488886 8.486102538 283472597 ppk Phosphorus Phosphorus utilization Xanthomonas albilineans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas; 8.46579592 8.618422053 9.10820401 8.777751007 8.902585603 8.694872929 8.781175908 8.509090934 109660032 ureC Nitrogen Ammonification unidentified bacterial contaminant superkingdom:Bacteria; 8.717721408 8.69140867 8.809698107 8.131459295 7.961761495 7.988850878 8.024796985 7.766578324 7.964679247 7.755163958 8.172495773 118171099 SMR_antibiotics Antibiotic resistance transporter Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 9.609392754 9.81543153 9.723296046 9.273547518 9.57818822 9.356240959 9.377489327 9.911223683 9.729027448 9.950860191 9.767195918 9.48885403 241908070 pstB Stress Phosphate limitation Desulfovibrio vulgaris RCH1 7.379682796 7.185069556 7.601341013 7.713461914 7.447224282 7.445816198 7.63882093 7.492838772 89200536 catechol_B Organic Remediation Aromatics Other aromatics Bacillus cereus subsp. cytotoxis NVH 391-98 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cytotoxicus; 8.473500408 8.4477049 8.606661244 8.112492452 7.724771643 7.920770174 7.64365795 7.28117209 8.3925122 7.630235349 7.452985804 7.967858042 260635458 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Prevotella sp. oral taxon 472 str. F0295 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella sp. oral taxon 472; 8.276336951 8.33612655 8.09011772 8.047617112 7.568411355 7.86311117 8.326376911 7.808010736 7.906758932 7.502108165 7.407378179 7.700476495 109290115 endolysin_glycosidase Bacteria phage LYSIS Aeromonas phage 25 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 8.988182599 8.952331491 9.013613181 8.040749093 8.015917949 7.748408175 8.231411968 8.070306439 8.206038423 8.261135905 7.815145293 7.949643899 156031275 tfdA Organic Remediation Aromatics Chlorinated aromatics Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 8.530777808 8.602046367 8.345034231 7.329203264 8.185617229 8.249589057 8.4702174 6.968312657 8.647046261 7.389519604 7.445803666 7.630686413 72123629 catB Organic Remediation Aromatics BTEX and related aromatics Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.463411711 8.343757839 8.718527657 8.102945303 7.315838999 8.116595848 7.840933204 7.321619431 7.943340643 7.839397764 7.832992739 183580042 nmoA Organic Remediation Aromatics Nitoaromatics Kocuria rhizophila DC2201 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 8.73838164 8.593869491 8.639130707 8.207380196 8.08708479 8.31168635 8.55776392 8.216381616 9.164589666 7.978556796 7.745014062 8.086361749 224948302 clpC Stress Protein stress Clostridium methylpentosum DSM 5476 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium methylpentosum; 9.316932671 9.210890372 9.557750051 8.836794934 8.799908411 8.522043421 8.405206609 8.44114748 8.55851132 8.449828881 8.933659632 10442738 Catechol Organic Remediation Aromatics Other aromatics Pseudomonas sp. IMT40 8.50659903 8.519387077 8.770474248 8.248559671 8.233128038 8.577071479 8.295555358 8.349444046 8.528254248 8.421707469 8.44367498 8.425126346 39650578 ureC Nitrogen Ammonification Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.177309726 9.008380898 9.113034667 8.662994814 8.687653689 8.645905288 8.760694968 8.816984209 9.065677173 8.807368924 8.847860405 8.734794371 167033092 TerC Metal Resistance Tellurium Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.844046958 9.188332989 8.809593416 8.22191694 8.638984611 8.64467686 8.351442331 8.512641865 8.698192642 8.245712431 8.385644318 8.408869546 210621513 ppk Phosphorus Phosphorus utilization Clostridium hiranonis DSM 13275 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hiranonis; 8.75210905 8.569629026 8.701095826 8.284578756 8.127315093 8.048043083 7.691215247 7.450788403 8.240765075 7.749726136 7.672106882 8.164291662 126732364 phn Organic Remediation Herbicides related compound Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 9.062558041 9.096412735 9.205110865 8.468706575 8.254532902 8.135772772 8.825726088 8.264618132 8.608336568 8.421284427 8.340265567 8.500188163 224519412 SMR_antibiotics Antibiotic resistance transporter Bacteroides cellulosilyticus DSM 14838 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 8.8250252 8.598738809 8.920378359 8.043560587 8.070439636 8.030740583 7.758666014 7.719592995 8.056437268 8.079467941 7.899967503 8.09683708 90104541 fnr Stress Oxygen stress Rhodopseudomonas palustris BisB18 8.224305496 8.419505805 8.276422239 7.969653632 7.459278171 7.876816824 8.127495192 7.104366884 7.224121902 7.744898457 7.801952049 149197850 clpC Stress Protein stress Lentisphaera araneosa HTCC2155 superkingdom:Bacteria;phylum:Lentisphaerae;order:Lentisphaerales;family:Lentisphaeraceae;genus:Lentisphaera;species:Lentisphaera araneosa; 9.640870707 9.776177061 9.746024865 10.00390462 10.37314182 10.0540665 9.784419416 10.50582926 9.437359643 10.21643705 10.07911339 10.32692572 214042734 nitA Organic Remediation Aromatics Other aromatics Roseobacter sp. GAI101 8.84132143 8.612849967 8.682243254 7.960239962 7.916380762 7.949826328 8.161039446 8.299904454 8.45733325 8.494844361 8.385876952 8.370853495 169793352 narG Nitrogen Denitrification uncultured bacterium 8.772732362 8.636922421 8.894525756 7.952468325 8.055214002 8.205595977 8.494171055 8.503216996 8.157288049 8.398003615 8.474140395 8.406134982 76667604 nirS Nitrogen Denitrification Hydrogenobacter thermophilus superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenobacter; 8.967813485 8.276560955 8.741452298 8.953511593 9.057248814 8.827590585 8.424444272 9.031886031 8.607178618 8.876944929 9.01952703 8.805517426 146274106 pstA Stress Phosphate limitation Pelotomaculum thermopropionicum SI 7.693343891 7.360076244 7.246729665 7.275362702 6.982419084 157804763 AprA Sulphur adenylylsulfate reductase Thiothrix sp. 12730 8.9839042 8.70729478 8.793841184 7.906623143 8.413203706 8.254925051 8.445930932 8.352640457 8.398417235 8.602350236 8.697115094 8.565203752 183581971 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Kocuria rhizophila DC2201 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 8.421372983 8.396681313 8.12626439 8.298442035 8.287953705 8.295233637 7.962722625 8.448552792 8.090645325 8.339754045 8.258160763 8.166524944 119957452 CopA Metal Resistance Copper Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.55796814 8.542859998 8.314510886 7.601819774 8.20333727 8.014658771 8.162439119 8.282122525 7.56854851 228015255 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.305921809 8.152227269 8.194848037 7.978612292 8.11530007 7.980588943 8.327189714 8.032508463 8.066930547 8.073610842 8.140966416 7.859139194 68053497 arsenic_resistance_gene Bioleaching Metal Resistance Leptospirillum ferriphilum superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 8.093360852 7.792976504 7.632717393 7.555317459 7.549558212 7.049219871 7.378963796 7.716162793 7.492733307 7.265132673 7.467875761 33597218 aclB Carbon cycling Carbon fixation Bordetella parapertussis 12822 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella parapertussis; 8.605298894 8.855644967 8.68111656 8.327161495 8.42034704 8.027593827 8.322715454 8.606682176 8.33913716 8.641614052 8.660660484 8.982772049 119956998 katE Stress Oxygen stress Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.600661189 8.090463651 8.605559295 7.73118744 7.622652056 7.959932971 8.402240645 7.545567065 8.246572827 7.28507447 7.551366286 7.499153808 62896435 merP Metal Resistance Mercury Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.575566715 8.353697292 8.563153398 8.147238879 8.272700263 8.063554602 8.399192715 8.673956107 8.513707767 8.649824124 8.357361312 8.31700777 166712577 pilin virulence pilin Xanthomonas oryzae pv. oryzicola BLS256 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 8.575320913 8.616949396 8.66832619 8.541326063 8.533404014 8.433570959 8.620576834 8.621006409 8.866191462 8.593957769 8.762879616 8.509479015 160891972 nrfA Nitrogen Dissimilatory N reduction Bacteroides uniformis ATCC 8492 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides uniformis; 7.333194303 7.312527846 7.69410395 7.373956247 6.935403832 7.641197869 7.137216301 6.948112555 7.796508183 239816077 pilin virulence pilin Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 9.321535254 9.193578863 9.169132175 9.109908136 9.216036948 8.918708666 9.09980954 9.299546059 9.179868203 9.280013753 9.119972794 9.316923634 146292080 pilin virulence pilin Shewanella putrefaciens CN-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella putrefaciens; 8.306526301 8.1854325 8.093147779 7.413576848 7.63693449 7.449329027 7.267443508 7.35050703 7.375408146 7.46380838 7.414364699 2052180 merP Metal Resistance Mercury Pseudomonas sp. superkingdom:Bacteria;phylum:Proteobacteria; 9.08150706 8.854931847 8.768230478 9.216443588 9.291481452 9.146511806 9.219824151 8.983912938 8.916075139 8.620722418 8.564813219 8.425969528 9716120 ureC Nitrogen Ammonification Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 9.105773709 9.32231126 9.297666646 9.124455245 9.086901447 8.970759167 9.266713912 9.196884443 8.886131704 9.344652007 9.32210877 9.065501455 163667743 phoB Stress Phosphate limitation Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 8.839115048 8.842579203 8.946938355 7.737578458 8.954923483 8.828584928 9.210393043 8.548835066 9.142147818 8.576567876 8.754098358 8.922822381 227076821 katE Stress Oxygen stress Corynebacterium accolens ATCC 49725 8.236495761 8.262103631 8.52909921 8.416691489 8.256477707 8.323831515 8.864871658 8.531666572 8.568564357 8.483504203 8.48696547 227844664 phoB Stress Phosphate limitation Mobiluncus mulieris ATCC 35243 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus mulieris; 8.819957495 8.929102622 8.991584195 8.685840997 8.549738382 8.481916084 8.750517589 8.674180194 8.535033737 8.331416298 157144408 fnr Stress Oxygen stress Citrobacter koseri ATCC BAA-895 8.059575516 8.216314539 7.984353091 7.927319938 7.572400467 7.376056023 7.839158049 8.003731016 8.024990718 7.343941351 7.753748387 189338462 arcA Stress Oxygen limitation Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 8.7504409 8.793041056 8.908567167 8.834946678 8.590950929 9.134988231 8.975568077 8.511612856 9.192071315 8.943662825 8.572655372 84514648 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 8.84560594 8.996348054 8.89914211 8.245554306 8.20290426 8.288790413 8.612898853 8.305454258 8.862439573 8.25866718 8.369411171 8.30592645 119883433 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Salinispora arenicola CNS205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 8.630837645 8.766162051 8.499611452 7.877577164 7.451977022 8.558443104 8.999586431 8.517912337 8.838724795 8.672126675 8.749455511 8.620935938 186475131 MFS_antibiotic Antibiotic resistance transporter Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 9.206841457 9.22419253 8.91784506 8.815982215 9.037695172 9.14472216 9.219000532 9.191617449 9.160430737 8.965926427 9.222398926 8.89739011 221730803 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Diaphorobacter sp. TPSY superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax ebreus; 9.082763635 8.873598132 9.120304883 8.451003375 8.051622154 8.619637035 8.162277395 7.844331438 8.47789977 8.095514669 8.055234975 8.544005013 118173753 Catechol Organic Remediation Aromatics Other aromatics Mycobacterium smegmatis str. MC2 155 8.723872611 8.897887325 9.195637396 8.182819232 8.111895944 8.364287855 8.774220209 8.303439139 8.868254438 8.354589585 8.234095199 8.435889631 170744473 sigma_24 Stress Sigma factors Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 9.529573912 9.686619331 9.330947083 9.042934436 8.460764693 9.516047711 9.809685215 9.413449129 9.767049108 9.234639578 9.403094215 9.3777146 169759678 MFS_antibiotic Antibiotic resistance transporter Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.800050951 8.458517735 9.122581513 8.16631936 8.446699044 8.231265271 7.746553437 7.723518928 7.857347077 8.154477562 8.299261717 7.976389197 89360567 bphC Organic Remediation Aromatics Polycyclic aromatics Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.577828299 8.659245607 8.504878479 8.074016159 8.472810226 8.128136081 8.263964536 7.991138737 8.705248102 7.880389001 8.023704308 7.738979972 84696020 nagI Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8.392582571 8.338286288 8.266465446 8.009088143 8.107510325 8.601803069 7.988209958 8.81418163 7.811229416 7.897993706 7.697175985 157911061 gyrB other category gyrB Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 8.467552369 8.224203853 7.863689165 7.754807088 7.647034684 7.586275743 8.015968817 8.105024701 7.909931351 7.771432717 7.885820963 109290273 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.340976364 8.190353694 7.743010406 7.943363908 7.918635691 7.991379251 7.733461197 8.00588067 7.545474924 7.995456972 7.609548787 9955897 groEL Stress Heat shock Propionibacterium granulosum superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium; 8.57113288 8.526331698 8.162468146 8.103159885 8.347494271 8.434355892 8.835168283 8.560297329 8.68095196 8.294912489 8.510179181 8.644355685 51856565 Al Metal Resistance Aluminum Symbiobacterium thermophilum IAM 14863 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVIII. Incertae Sedis;genus:Symbiobacterium;species:Symbiobacterium thermophilum; 8.954574467 8.734753753 8.913725138 8.303830228 8.360087695 8.144484783 8.123505665 7.870789358 7.967936707 8.008942639 8.374999174 189440403 ara Carbon cycling Carbon degradation Hemicellulose Bifidobacterium longum DJO10A superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 8.173879185 8.462579166 8.490138323 8.22339706 8.509596558 8.445083431 8.43614864 8.49825153 8.448315708 8.310326478 8.499556825 8.29237518 49612946 trzE Organic Remediation Herbicides related compound Erwinia carotovora subsp. atroseptica SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 9.280319523 8.846942101 8.524290096 8.961548782 9.013473038 9.126429782 8.740067915 9.258625666 8.712117768 9.035430645 9.342204254 8.903475111 13591679 dsrB Sulphur sulfite reductase Bilophila wadsworthia 8.30727654 8.090463625 8.388777138 8.411011252 8.420418139 8.303819944 8.245116799 8.480781884 8.455954261 8.38748017 8.418167936 8.227337428 118051772 tfdA Organic Remediation Aromatics Chlorinated aromatics Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.390855017 8.346149768 7.665876654 7.62589703 7.899242236 7.670128004 7.423191206 8.146958519 7.688615301 7.832620966 7.748638839 92112457 proO Organic Remediation Aromatics Other aromatics Chromohalobacter salexigens DSM 3043 8.439294289 7.876844641 8.123431031 7.956348979 7.827969781 7.825063591 7.803925469 8.01746733 8.124310594 8.427002039 8.308944054 60650089 alkK Organic Remediation Others Pseudomonas chlororaphis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas chlororaphis; 8.521984423 7.994995656 7.979271709 8.372953571 8.253937748 8.092606716 8.318492103 8.08060922 7.896743537 7.955653684 8.006946729 7.717554897 88947140 ppx Phosphorus Phosphorus utilization Desulfotomaculum reducens MI-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum reducens; 9.86949281 9.752332099 9.853352528 9.035376312 8.895048165 8.959284183 8.452813914 8.637271478 8.991310256 8.932496296 9.082048326 118469676 chnB Organic Remediation Other Hydrocarbons Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.595308376 8.422964043 8.439935226 8.352003653 8.22079942 7.985843547 8.003527926 8.304315954 8.445143183 8.307075657 7.958649965 8.146553211 16331542 pstC Stress Phosphate limitation Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 8.718980472 8.884570212 8.733025067 8.217408799 8.388767064 8.878110077 9.050741201 8.847973239 8.96399397 9.090713212 9.006623483 9.247449306 81428119 pstB Stress Phosphate limitation Lactobacillus sakei subsp. sakei 23K 8.241667589 8.136058078 7.457946316 7.551383787 7.394056631 7.397171818 7.626064258 7.925496653 7.468452182 7.444851459 7.453079758 219949377 TerC Metal Resistance Tellurium Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 9.153933717 8.832081153 8.273058124 8.97226573 8.8094073 8.731087253 8.489106184 9.192790653 8.596616174 8.931120858 8.885149998 9.056679195 253700412 cytochrome Energy process Energy process Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.01704697 7.918508416 8.08973925 7.788159276 7.55870091 7.36099444 7.427969454 7.666668286 7.668407327 7.704716715 7.616752462 83577916 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 9.625298591 9.497196772 9.684738458 8.934048172 8.910485806 8.728937839 8.789982255 8.8238499 8.802614307 8.753260981 8.89989933 9.180414714 166408388 nahA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 10.00047151 9.954002421 9.962896259 9.532810728 9.394243453 9.333722901 9.330319089 8.926748272 9.582047936 9.483844217 9.503362321 9.511261552 220907679 ureC Nitrogen Ammonification Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 9.181107419 9.01639214 9.147061879 8.849727988 8.783229729 8.731321973 8.400171821 8.381966712 8.743818072 8.446518015 8.41893789 8.784522351 32447270 SMR_antibiotics Antibiotic resistance transporter Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 8.634944858 8.317631265 8.570829368 7.696259241 7.884621195 7.87416388 7.681638887 7.7859719 7.849213045 69284809 pulA Carbon cycling Carbon degradation Starch Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 8.738938427 8.630759426 8.772387103 8.054446249 8.053220203 8.165047776 8.710907005 8.102669168 8.551270225 8.180629791 7.612499747 8.013144967 55379419 TehB Metal Resistance Tellurium Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 8.591137443 8.503873541 8.671861363 8.409514277 8.339166738 8.828422198 8.671883345 8.823728389 8.530643702 8.290668834 8.346760644 169156112 iro virulence Clavibacter michiganensis subsp. sepedonicus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 8.923443666 8.840366129 8.443884328 8.401252892 8.650178617 8.924603937 8.423985158 8.368744554 8.290154413 8.5500817 8.314645294 161163931 phoB Stress Phosphate limitation Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 9.587785382 9.464888776 9.74698761 9.286197161 9.134209043 8.981705195 9.005811785 9.253406678 8.989229269 9.2668525 9.382817853 9.15794481 216932 nitA Organic Remediation Aromatics Other aromatics Rhodococcus rhodochrous 9.193802376 9.08788452 8.354572209 8.581465475 8.631278769 9.095969446 8.820351455 8.84509294 8.245624892 8.195858092 8.239535262 179346816 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 8.694861905 8.529366687 8.404873887 8.293230025 8.20867427 8.221635697 8.327253054 8.325200489 8.080178861 8.233531112 8.402347287 8.054894767 241365980 narJ Stress Oxygen limitation Acidovorax delafieldii 2AN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax delafieldii; 8.707907733 7.809278234 7.753834384 8.138483286 8.038870437 8.449743947 7.634414953 8.026394406 237803555 iro virulence Pseudomonas syringae pv. oryzae str. 1_6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 8.897512101 8.82045449 9.111669873 8.460281541 8.670136354 8.48700012 8.258175431 8.262361748 8.427309031 8.45380096 8.881037437 238868536 cda Carbon cycling Carbon degradation Starch Edwardsiella ictaluri 93-146 9.130077302 9.242881667 9.310096395 8.872263093 8.49184907 8.519828118 8.344925704 8.331777465 8.337111496 8.359107246 8.373180739 8.766885008 84509834 obgE Stress Radiation stress Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 8.776626201 8.469859735 8.469229297 8.472361293 8.18079521 8.918476293 8.759377812 8.445712503 8.597963914 8.553990907 8.293805185 119953912 pcc Carbon cycling Carbon fixation Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.28505872 8.548355501 8.697072514 8.29045127 8.061791805 7.940396624 7.814309289 8.285350938 8.151888527 8.276312411 8.162138667 75676104 ArsC Metal Resistance Arsenic Nitrobacter winogradskyi Nb-255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 10.30699538 10.35974687 10.26102461 9.508316701 9.523119919 9.460116138 9.481596087 9.457141259 9.823161428 9.804379305 9.826017296 9.809506695 71155721 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.945941515 8.613874854 8.975662944 8.466682259 8.41092407 8.227961124 8.750723533 8.424744738 8.757457467 8.330487467 8.485488466 8.571400358 3157618 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 8.240002166 8.500244794 8.590631972 7.870033596 7.739914858 7.888237077 7.409317757 7.987051064 7.660631629 7.39372239 7.717501829 1653704 ZntA Metal Resistance Zinc Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 9.050106018 8.922407314 9.248139395 8.54044948 8.408219762 8.372536411 8.304235634 8.34719286 8.277927694 8.055238507 8.604880362 217505946 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 8.948042602 9.147818551 9.217890771 8.853732757 8.879164982 8.870202956 8.794476422 8.970712915 9.043184547 9.229545011 9.124351216 9.065831777 134099347 P450 Energy process Energy process Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 8.600297946 9.204909699 9.164431793 9.432430044 9.2012375 9.128558391 9.674921893 8.81921948 9.341636961 9.240510007 8.915317553 67942375 pmoA Carbon cycling Methane Methane oxidation Methylosinus acidophilus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylosinus; 8.0844308 8.248896177 8.264268778 8.163092179 8.26645475 8.178098496 8.277781891 8.586769764 8.320870649 8.673150683 8.55621056 8.371738095 38569300 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. FL2 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 8.659479757 8.468605068 8.726441907 8.062877589 8.077352304 8.067199613 7.738397388 7.896640296 8.000761741 8.109514886 7.882263055 7.956443222 152983577 PobA Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.324656163 8.223941198 8.641293714 8.566228203 8.217093627 8.412673478 8.353416268 8.132159926 8.385357766 8.535702415 7.993100622 171991065 amyA Carbon cycling Carbon degradation Starch Exiguobacterium sibiricum 255-15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 8.184947297 7.997969011 8.089060336 8.068911474 7.998411181 7.613797231 8.161989405 7.992462255 8.15178208 7.872770629 7.950034698 161383874 phn Organic Remediation Herbicides related compound Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 8.551002442 8.308965428 8.554226345 8.143685186 8.022670726 7.707424133 7.888269844 8.385370954 8.260919623 8.162907877 8.094526342 8.300752436 240866348 hly virulence hemolysin Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.137903206 8.054221984 8.361141099 8.220152794 8.003949111 7.821265734 7.890955968 8.517415575 8.528509715 8.348991952 7.823507261 8.318000571 22087697 Catechol Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 9.439159584 9.467909271 8.984154448 9.265223215 9.156785799 9.60826545 9.304899572 9.254363957 9.153620279 9.045799136 9.128954822 84686870 nagG Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.431040966 8.28597931 8.442187415 7.870379247 8.017750278 8.281980136 8.241461298 7.486679642 8.432967897 7.912381938 7.609437563 8.025041504 126360002 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.40255809 8.837952058 8.817053577 8.358500286 8.228070631 8.055859777 7.983396552 8.197825324 8.152564728 8.009977905 8.105240214 89512910 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.36386749 8.370427503 8.493544426 7.923959949 7.740601491 7.712129631 7.572201279 7.423021347 8.111686268 7.652606935 7.464962619 7.830854777 68567587 thioredoxin Bioleaching Sulphur Sulfolobus acidocaldarius DSM 639 9.551210349 9.585003112 9.606952105 8.922140013 8.905741986 8.855951381 8.767268094 8.67123481 8.715853006 8.760162239 8.875685275 9.207215692 228565769 APS_AprA Sulphur adenylylsulfate reductase Leptotrichia buccalis DSM 1135 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteria;order:Fusobacteriales;family:Fusobacteriaceae;genus:Leptotrichia;species:Leptotrichia buccalis; 8.877652292 8.693976732 8.772898272 8.202783736 8.247312728 8.416406455 8.017967727 8.100434265 8.264138956 8.388208334 8.448015778 8.39364518 268549313 amoA Nitrogen Nitrification superkingdom:Archaea; 9.39147567 9.281099238 9.61181463 8.900069114 9.12776155 8.759900591 8.848875496 8.746371886 9.360755655 8.846019069 8.716676736 8.764463353 15159048 cspA Stress Cold shock Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.386077532 8.6851965 8.329442613 8.74207931 8.482119676 8.684384732 9.21102731 8.595615108 9.04119711 8.852572801 8.683066014 56460908 B_lactamase Antibiotic resistance Beta-lactamases Idiomarina loihiensis L2TR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina loihiensis; 9.105478276 8.918140256 8.679833199 9.463717436 9.242273228 9.163399063 8.844832293 83746333 ChrA Metal Resistance Chromium Ralstonia solanacearum UW551 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 9.996968494 9.795530342 9.358908912 9.571647041 9.790382766 9.881280865 9.94583344 9.879573479 9.990028547 9.549061476 10.00693372 9.614360113 85776425 CopA Metal Resistance Copper Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 8.409141899 8.815126887 8.390773036 8.477691011 8.479295725 8.369232637 8.601309496 8.630109312 8.567622796 8.838903511 8.748117444 8.504528229 156233541 ChrA Metal Resistance Chromium Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 9.129568135 8.925681983 9.214532419 8.97277691 8.897347383 8.738436062 8.697027144 9.145426978 8.851189476 9.100287371 9.099880656 8.967977222 119813285 CopA Metal Resistance Copper Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.972136084 9.147743012 9.065839478 8.711559493 8.488057204 8.627447485 8.981922326 8.704688591 9.295606138 8.487022779 8.513266936 8.461162153 219868357 pstB Stress Phosphate limitation Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 8.331660518 8.26305658 8.578845079 7.806512716 7.827620723 7.75451218 7.761457328 7.360176125 7.990389631 7.931594766 7.380453334 8.059488097 94552051 pstC Stress Phosphate limitation Candidatus Koribacter versatilis Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 8.386302558 8.162664443 8.163091319 8.114313216 8.070257483 7.888248029 7.730398468 8.021949453 8.02077842 7.955089519 7.859918579 8.061536702 224818509 sigma_70 Stress Sigma factors Thioalkalivibrio sp. K90mix 8.302424137 8.148707567 8.058877204 8.085050398 7.713582984 7.606598966 7.832008681 8.085640348 8.195841748 7.955630742 7.868795087 7.923227234 126237535 TerC Metal Resistance Tellurium Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.870551955 8.367152711 8.67037865 8.570427445 8.451004548 8.181639358 8.393864366 170027507 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 8.680058187 8.790221906 8.718197093 8.183242839 8.199461797 8.247789964 7.813694149 8.18369945 8.078223134 8.27141343 8.288267531 223892382 grpE Stress Heat shock bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 9.154301218 8.962329852 9.305242806 8.204431653 8.312144224 8.253171408 8.306597253 7.803064717 8.611434694 269215930 obgE Stress Radiation stress Slackia exigua ATCC 700122 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Slackia;species:Slackia exigua; 8.095926951 8.409133992 8.415843383 8.179974467 8.090526881 7.846827825 7.5950663 8.132034094 8.141442754 8.141836046 8.101284991 8.055329734 15835506 ahpC Stress Oxygen stress Chlamydia muridarum Nigg superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Chlamydiaceae;genus:Chlamydia;species:Chlamydia muridarum; 8.237655494 8.310297457 7.667901597 7.842835599 7.630094483 7.724116991 7.160422966 7.934009752 7.225657669 7.290591174 7.736977768 134101440 NiR Nitrogen Assimilatory N reduction Saccharopolyspora erythraea NRRL 2338 8.728820759 8.398024428 8.3756915 8.253224899 8.439379947 8.325595994 8.080749949 8.542117738 8.488895503 8.278784977 8.511975565 8.20802692 146305065 type_III_secretion virulence secretion Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 8.241511568 8.346863017 8.295693342 7.47497697 7.64747507 8.371406062 8.431912982 8.438905897 8.328953983 8.278962405 8.238398032 8.430493618 19888076 nifH Nitrogen Nitrogen fixation Methanopyrus kandleri AV19 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanopyri;order:Methanopyrales;family:Methanopyraceae;genus:Methanopyrus;species:Methanopyrus kandleri; 8.954355216 9.113819707 9.220233704 8.534764681 8.406438902 8.560879276 8.429644518 8.230228083 8.407274043 8.324983923 8.212172071 8.578116544 111281411 pcc Carbon cycling Carbon fixation Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 9.422612025 9.712449936 9.476741623 9.016163096 9.741651715 9.996741721 9.509943091 9.894144918 9.36090305 9.10022728 9.475353466 220699303 iro virulence Aspergillus flavus NRRL3357 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus flavus; 9.002562572 8.127215512 8.377191898 9.14393287 8.886626473 8.553843687 8.8861322 8.749719081 8.775244758 8.694156293 8.579401967 153092568 pilin virulence pilin Mannheimia haemolytica PHL213 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Mannheimia;species:Mannheimia haemolytica; 8.294948284 8.215005309 8.673257342 8.081424374 8.240931623 8.42442627 8.265071389 8.187397729 8.658397129 8.318435939 8.560569085 8.282012224 77810739 pulA Carbon cycling Carbon degradation Starch Shewanella putrefaciens CN-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella putrefaciens; 8.17743436 7.927078237 7.441329061 7.776862547 7.551311535 7.478759823 7.697112413 7.708885596 7.722643079 7.602018716 7.53730945 222054345 obgE Stress Radiation stress Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.456170244 8.564318802 8.116738511 7.945827752 7.843018674 7.733359343 7.473762656 7.625218813 7.64486057 7.838207507 20089774 pstB Stress Phosphate limitation Methanosarcina acetivorans C2A 8.706056313 8.325805468 8.506597432 8.41974235 8.42182092 8.352239164 8.596483172 8.672045058 8.716790946 8.764005123 8.520463929 227373989 clpC Stress Protein stress Thermobaculum terrenum ATCC BAA-798 superkingdom:Bacteria;genus:Thermobaculum;species:Thermobaculum terrenum; 7.985127062 8.127085766 8.157314964 7.794317539 7.20049118 7.363584231 6.849480713 7.545147392 7.23056137 7.465083705 7.739639748 14026114 fnr Stress Oxygen stress Mesorhizobium loti MAFF303099 8.113695704 7.885065773 8.407731105 7.851398891 7.498023458 7.905106454 7.746276258 7.689059541 8.195371439 7.659250203 7.331125146 7.439378247 99030482 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 8.498410425 8.720972478 8.874552436 8.753647809 8.63976703 8.413528742 8.708590377 9.33236873 8.625237992 8.910644267 9.069646592 78220779 phn Organic Remediation Herbicides related compound Desulfovibrio desulfuricans G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 8.322509728 8.080726189 7.70100878 7.70159868 7.969651899 7.558022486 7.886674663 8.009478009 7.556602051 7.77949683 7.731092799 157011616 APS_AprA Sulphur adenylylsulfate reductase uncultured bacterium 8.610044705 8.478205356 8.657487393 7.817763545 7.911395291 8.058327436 7.986212487 7.754218642 8.232407354 145283213 narI Stress Oxygen limitation Pyrobaculum arsenaticum DSM 13514 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum arsenaticum; 9.627436636 9.647412598 9.684920666 9.122029661 9.015274693 8.838506929 8.802990757 9.012596738 8.881216069 9.009391955 8.90578576 9.240460446 139003476 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.089783903 7.947482368 8.240140979 7.406609571 7.540448357 7.360433625 7.186698728 7.071514977 7.785123832 7.105989248 7.25173425 7.515435972 167033433 silC Metal Resistance Silver Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.625743568 8.403464683 8.629540635 8.293103822 8.359274397 8.154601602 8.456150384 8.540684973 8.61782632 8.707035163 51242285 pheA Organic Remediation Aromatics Other aromatics Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 9.115109449 9.121155894 9.433582961 9.338574559 9.408532245 9.151118525 9.394585759 9.757102621 9.362443494 9.809225294 9.593947703 9.650250024 195542035 fnr Stress Oxygen stress uncultured bacterium 6254 8.573143219 8.020433147 8.100845656 8.660383689 8.401261964 8.097780468 8.196355993 8.442375936 8.564649683 8.28806206 8.416322301 7.978307698 260062153 grpE Stress Heat shock Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 8.769185446 8.723691209 8.742295729 8.518313471 8.309053597 8.140994071 8.227804857 8.087122435 8.037883012 8.134396515 8.299978251 119773542 MFS_antibiotic Antibiotic resistance transporter Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 8.566337361 9.35986042 9.17901637 8.508064571 8.696744399 9.146751159 8.836628152 9.238531725 9.199392831 9.263333519 116077899 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.733343929 8.613273543 8.79237001 8.515771565 8.031946917 8.243985591 7.886567818 7.993345393 8.105495536 8.022108389 7.957859963 8.268841383 156231933 pstA Stress Phosphate limitation Roseiflexus castenholzii DSM 13941 9.481752002 9.508911872 9.308590817 9.021530604 8.674198854 8.761454795 9.51214663 8.959552301 9.119921073 9.308813253 9.565908994 9.507877607 240138496 amyA Carbon cycling Carbon degradation Starch Methylobacterium extorquens AM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 9.927594094 9.729604475 9.742164579 9.479437271 9.562984189 9.139220611 219996669 narI Stress Oxygen limitation Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 8.314051854 8.362356414 8.380383698 8.411445557 8.321385927 8.109825573 8.320456792 8.276578534 8.173464425 8.406727107 8.56192698 161579539 ppk Phosphorus Phosphorus utilization Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 9.109955037 8.973762635 9.027936767 8.60697195 8.632834021 8.143471208 241777129 fnr Stress Oxygen stress Allochromatium vinosum DSM 180 8.410469249 8.442352664 8.472058366 8.169285892 7.928708484 8.100859561 8.156869358 8.530317107 8.31666616 8.424628062 8.443857786 8.379388955 157913904 CopA Metal Resistance Copper Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 8.365974092 8.040012444 8.288022209 8.126662401 8.106162904 7.724492167 8.407929881 8.057235217 7.916652736 8.035697341 8.452518595 266630485 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Caulobacter segnis ATCC 21756 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 8.63528871 8.839039852 8.664830698 8.287642136 8.182140886 8.154155863 8.322792227 8.084272981 8.413776827 8.177823337 8.067716364 8.224951634 227438576 Host_recognition_T4_type Bacteria phage HOST RECOGNITION/STRUCTURAL Enterobacteria phage RB14 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 9.73359538 9.483591216 9.70302183 8.741171796 7.765654463 8.845287005 8.774831818 8.676932752 8.135774373 8.818963918 8.889462583 9.067742735 116697214 pstC Stress Phosphate limitation Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 8.698062754 8.280121419 8.676231146 7.764356016 7.924563437 7.704273488 7.711931603 7.452591411 7.569944389 7.523747077 7.856939988 212171518 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 8.507611901 8.349679028 8.555965763 8.107804616 8.593853003 8.409145221 8.339009738 8.570022338 8.384197005 8.073425183 8.387819693 7.927581828 24474401 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira; 7.500147036 7.453007088 217505074 katE Stress Oxygen stress Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 8.954311863 8.977905665 8.844635857 8.349352648 8.211939589 8.196837818 8.349466378 8.435140038 8.384592186 8.363151323 8.573302626 56479332 Arylest Organic Remediation Aromatics Other aromatics Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 7.993613034 8.18290012 8.098637966 7.857332006 7.706660251 7.705489994 8.029874542 8.184032761 8.043837766 7.737821138 7.705111447 127514462 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 8.365239083 8.653525679 8.394529106 7.356532357 7.994558297 7.963218864 7.799611276 7.638076455 8.105076602 7.878070906 7.917092289 7.91303709 124260228 akbF Organic Remediation Aromatics BTEX and related aromatics Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 8.126497232 8.273608561 8.089586508 7.795396254 7.550282256 7.979808244 8.004644254 7.487574642 8.011983393 7.761321819 7.501599073 7.559442713 213951173 obgE Stress Radiation stress Corynebacterium amycolatum SK46 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium amycolatum; 8.778105276 8.722297926 8.82580446 8.661222024 8.646632714 8.716028651 8.95739699 9.079062968 8.574540829 9.189654925 9.131084875 8.928433982 240107222 endochitinase Carbon cycling Carbon degradation Chitin Coccidioides posadasii C735 delta SOWgp superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides posadasii; 8.327762178 8.121772034 7.903203917 7.807570346 7.924470905 7.701031539 7.94592098 7.857494971 8.078449127 7.718743007 7.760425849 7.549438177 219541160 tutFDG Organic Remediation Aromatics BTEX and related aromatics Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 9.200741827 8.831597752 9.364782671 8.545117502 8.481076604 8.485396182 8.309687063 8.057326055 8.201316491 8.174303647 8.543855809 146341131 catB Organic Remediation Aromatics BTEX and related aromatics Bradyrhizobium sp. ORS278 9.443322836 9.009603925 9.481561721 8.66446183 8.714355898 8.489597114 8.983156234 8.875669167 8.906066981 9.089368118 9.086474904 9.225224314 218241504 sigma_24 Stress Sigma factors Alicyclobacillus acidocaldarius LAA1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 8.696057636 8.402608871 8.715156196 8.364911182 8.093003438 8.039586443 7.974650718 7.758926685 7.876645534 8.009214394 8.092547993 7.910944668 223585868 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.620240276 7.584797599 7.841331075 7.922864858 7.253369555 7.56632425 7.535519689 148843194 linB Organic Remediation Pesticides related compound Planctomyces maris DSM 8797 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces maris; 8.613772198 8.637527658 8.683187051 8.220592542 8.178127634 8.078009037 8.033834613 8.379777152 8.35815327 8.556247476 8.347097298 8.451038295 10863143 nifH Nitrogen Nitrogen fixation marine stromatolite eubacterium HB(0697) A101A superkingdom:Bacteria; 8.477320257 8.772562621 8.705007304 7.801102428 7.711005113 7.894850379 8.538162404 7.87120813 8.649351687 7.679790836 8.226404333 7.744359021 225013137 oxyR Stress Oxygen stress Flavobacteria bacterium MS024-2A superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria; 8.819449894 8.735845721 8.824573733 8.205833742 8.026558421 8.059060772 7.846578791 7.407930557 7.913868515 7.934841461 8.106916208 227978056 bphF1 Organic Remediation Aromatics Polycyclic aromatics Tsukamurella paurometabola DSM 20162 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 8.242426521 8.196825157 8.378547909 8.191010707 8.041646843 7.929115115 7.948168105 8.298248428 8.343866923 8.320433842 8.438301214 8.484536306 53756627 gyrB other category gyrB Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 8.534905241 8.509867391 8.884097512 8.34145004 8.41434998 8.159226233 8.14719705 8.537383824 8.481023037 8.586426339 8.404910011 8.387356586 159891325 xylA Carbon cycling Carbon degradation Hemicellulose Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 8.577337705 8.550520987 8.509793824 7.971048743 7.921376854 7.974109835 7.556480098 7.690827231 7.812331914 7.981105731 7.897708463 8.167544689 224522924 pstS Stress Phosphate limitation Bacteroides cellulosilyticus DSM 14838 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 8.342049305 8.658553661 8.66858858 8.898947057 8.411634305 8.078987351 8.927557092 8.421301662 8.583102243 254419257 obgE Stress Radiation stress Brevundimonas sp. BAL3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas; 8.624382647 8.767462277 8.589512207 8.322245295 8.567067582 8.196672802 8.441980022 8.497685675 8.368518212 8.728645429 8.712898104 8.396116776 118166305 CDH Carbon cycling Carbon degradation Cellulose Mycobacterium avium 104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 8.79071916 8.773953852 8.751135284 8.753045643 8.761623831 8.533886388 8.339818812 8.818477647 8.753713035 8.906888134 8.696347085 8.780719153 117649100 sigma_70 Stress Sigma factors Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 9.802918161 9.658113078 9.522205291 9.570701906 9.569241515 9.160848927 9.328278142 9.636308699 9.439179265 9.587867537 9.513930006 9.611758405 269142822 AceB Carbon cycling Carbon degradation others Brevundimonas subvibrioides ATCC 15264 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas;species:Brevundimonas subvibrioides; 10.13975869 10.02978759 10.09487142 9.512978088 9.102051106 9.358373519 9.355653301 9.13681005 9.27308384 9.474413836 9.380500437 9.726161073 198257930 silC Metal Resistance Silver Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 8.166941787 8.116700879 7.983041109 7.762065364 8.182665098 7.98680649 8.145609357 8.167599526 8.219050474 224819531 pstB Stress Phosphate limitation Natrialba magadii ATCC 43099 8.874856859 9.182585451 8.930158537 9.135197814 8.955589986 8.979411551 9.534862137 9.351361467 9.136492061 9.033086973 8.970278415 8.907076288 39970051 ChrA Metal Resistance Chromium Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 8.462152805 8.288275521 8.302924953 8.568952965 8.500218585 8.431965479 8.267657043 8.957732135 8.168257053 8.581310385 8.769006713 8.302813221 153999728 gyrB other category gyrB Candidatus Methanoregula boonei 6A8 8.295362379 8.12767442 8.223028936 8.049006411 7.803524052 7.895133817 7.66834838 7.946174224 7.973565641 8.095260368 8.082167444 8.014304879 108767036 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 8.659048215 9.374473361 8.658476307 8.253261517 7.92698647 9.104119221 9.541813476 9.021183557 9.064244168 8.59121536 8.999645245 8.881527452 121553271 gyrB other category gyrB Verminephrobacter eiseniae EF01-2 8.228192187 8.271399379 8.145876348 7.583637508 7.629731048 7.818854217 7.958878925 7.591558464 8.05080736 7.87567049 7.798331924 7.763777176 86285622 xylanase Carbon cycling Carbon degradation Hemicellulose Sorangium cellulosum superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium; 8.46981497 8.821797567 8.352597327 7.906236958 7.79724004 7.792892502 7.795517228 7.97742531 7.848408943 7.80240154 8.173207217 83835680 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 8.060049535 8.052513684 8.167232156 7.954199769 7.869628755 8.024013538 8.510235057 8.403815518 8.545881688 8.165080572 8.486313734 189333844 merT Metal Resistance Mercury Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 7.978924722 8.087612543 8.079311763 7.615049478 7.616571513 7.805711053 7.697706109 7.879284357 8.047548175 7.678983955 7.704019432 7.740325802 148262038 glnA Stress Nitrogen limitation Acidiphilium cryptum JF-5 8.262050752 8.652895513 8.57361848 8.249068223 8.049416261 8.266174707 8.748409973 8.747915516 8.438255462 8.780735742 193213306 CopA Metal Resistance Copper Chlorobaculum parvum NCIB 8327 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum parvum; 9.709719783 9.644070531 9.66067654 9.111040063 8.747142554 9.072047369 9.1216775 8.654790431 9.417389335 9.308565965 9.528677538 9.448697428 183580482 CMCI Organic Remediation Aromatics Other aromatics Kocuria rhizophila DC2201 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 9.216074781 9.33191733 8.906513313 9.159735865 9.249994812 8.971421671 9.138461723 9.233279331 117984482 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 8.093843267 8.209175005 8.220713115 8.135308363 7.998721723 8.442947329 7.838592062 8.344157903 8.002355654 7.777656295 7.848937657 46307971 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.384565205 8.28217974 8.24848746 7.98883367 8.27372276 8.220612912 8.379760711 8.234050896 7.814397659 113883978 iro virulence Shewanella sp. MR-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 8.399889339 8.583218322 8.694236175 8.014749361 7.825487146 7.907835589 7.405306529 7.561265245 8.028770943 7.873327859 7.628142681 8.0336742 58039171 phoB Stress Phosphate limitation Gluconobacter oxydans 621H superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter oxydans; 9.627629126 9.555257731 9.498549845 9.005903995 9.312999347 9.448646345 8.890338048 9.529131931 9.343164396 9.642773757 9.575776904 85690157 gyrB other category gyrB Erythrobacter sp. NAP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 9.47375121 8.811675092 9.033657484 8.976408438 8.562297812 8.600914449 9.102017982 9.071394036 9.076423163 8.897651571 8.921799252 8.62528358 15966601 pulA Carbon cycling Carbon degradation Starch Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 8.891600359 8.902769814 8.486410587 8.942357756 8.84234526 8.541051386 9.086868355 8.921933826 9.072836102 8.694292054 8.706970436 8.451382782 83361600 nosZ Nitrogen Denitrification Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 8.897960018 8.958751848 8.772636327 8.659255729 8.646999157 8.485795495 8.402449325 8.562632993 8.422838508 8.416693915 8.517936244 158251644 APS_AprA Sulphur adenylylsulfate reductase uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 8.603388451 9.274285828 8.416783259 8.31590533 8.54319084 8.347791 8.527508018 8.633887084 8.52157304 8.895084527 8.977590967 8.742388853 120604841 Mex Antibiotic resistance transporter Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 9.104414072 9.294378238 8.906060487 8.72590829 8.963573347 8.920515755 9.154294146 9.259667579 9.158520943 9.100683641 9.034242567 9.059484767 227947997 ahpC Stress Oxygen stress Meiothermus ruber DSM 1279 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 9.171738869 9.039581796 9.30224105 8.887061908 8.829011117 8.779128992 8.586003335 8.681202912 8.751203802 8.6917691 8.683917772 9.006048731 88180587 endochitinase Carbon cycling Carbon degradation Chitin Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 8.518891554 8.405778545 9.04054043 8.432636307 8.054380793 8.805694641 8.557438626 8.790499567 8.144637975 8.528113171 8.230680552 28379475 BADH Organic Remediation Aromatics Other aromatics Lactobacillus plantarum WCFS1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus plantarum; 8.997578943 9.065543539 9.294736798 8.294712158 8.335523743 8.159360904 8.263266301 7.816926908 7.900713352 8.065257695 8.490363793 119718514 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 9.722122918 9.514619926 9.48458252 9.297435376 9.250753965 9.261397304 9.394473833 9.244490677 9.564119914 9.129026425 9.264998166 9.145167359 221636011 sigma_70 Stress Sigma factors Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 8.677761117 8.587969703 8.998423983 8.0283466 7.966786022 8.16011428 7.827801621 7.788646538 8.16910743 7.830501121 7.696013601 8.137163418 8517646 sox Sulphur Sulphur oxidation Paracoccus denitrificans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 9.309967368 9.382383411 9.358812917 8.626082792 8.707290676 8.732237453 9.532406861 8.916964106 9.573360825 8.910515906 8.974033332 8.944316815 67154156 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Azotobacter vinelandii AvOP 8.194096274 8.036470968 8.272678986 7.471598073 7.601504433 7.706847084 7.464861155 7.496852334 8.183211346 7.983956868 7.935570236 7.547622014 264675078 fnr Stress Oxygen stress Caulobacter segnis ATCC 21756 9.32278139 9.297559934 9.324311301 8.743064561 8.793204548 8.905499507 8.95087585 8.475592462 9.0621464 8.678542969 8.728616016 8.997418641 119505745 pimF Organic Remediation Aromatics Aromatic carboxylic acid marine gamma proteobacterium HTCC2080 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 9.140172843 8.987040554 9.331992164 9.022979469 9.113661007 8.821019636 8.769210024 9.387418935 9.096027566 8.988263611 8.898804481 9.00224152 33571472 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bordetella pertussis Tohama I superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella pertussis; 9.851273306 9.982275555 9.82459795 9.382174652 9.781547847 10.2325677 10.39799474 10.01775262 10.1283166 10.3587571 10.19453501 10.40639581 86358023 nagL Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium etli CFN 42 8.602446357 8.988547237 8.349024339 7.911547569 8.026063188 8.191494482 8.017391522 8.623095789 8.157520943 8.096324532 8.232001238 115397631 phenol_oxidase Carbon cycling Carbon degradation Lignin Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 9.21943106 9.012543802 8.794747851 8.736071915 7.84784419 8.596943326 9.183658818 8.713673842 8.77917782 8.342560071 8.310198401 8.553413039 210069289 ara_fungi Carbon cycling Carbon degradation Hemicellulose Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 9.509155745 9.600820109 9.380858114 10.1520039 9.247880278 9.507043118 9.891046038 9.772816447 9.792071029 9.705262328 9.755417167 18147159 gyrB other category gyrB Alcanivorax sp. OM-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 8.342228017 8.052954462 8.280193379 8.352106412 8.123843135 8.101276413 7.894468044 7.929524399 8.010198681 7.965264549 7.916238402 94424656 fnr Stress Oxygen stress Sphingomonas sp. SKA58 8.439755091 8.381877994 7.177165815 7.58562397 7.22599573 6.938029516 188590798 gyrB other category gyrB Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 8.264828882 8.363144726 7.662732864 7.827942638 7.714465032 7.661529627 7.52884275 7.781252601 7.584347384 7.647253503 7.785758061 192361983 amyA Carbon cycling Carbon degradation Starch Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 8.902390518 8.79588294 8.788037848 8.350850889 8.138661958 8.029714327 8.164782962 7.734520618 8.367337924 8.214045804 8.38752333 8.263085367 167040971 ChrA Metal Resistance Chromium Thermoanaerobacter sp. X514 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Thermoanaerobacter; 8.105172723 8.304161167 7.566956006 7.470443053 7.370411491 7.240357448 7.78026125 7.1187382 6.969636751 241777128 fnr Stress Oxygen stress Allochromatium vinosum DSM 180 8.948683864 8.667895406 8.787949754 8.399068045 8.423610396 8.320037687 8.190042976 8.164497487 8.608980518 8.148087168 8.420355903 8.340795879 146403333 pyruvate_carboxylase Bioleaching Carbon fixation Acidiphilium cryptum JF-5 10.89756996 10.7605772 10.61537708 10.35289418 10.29938546 10.26100125 10.43155539 10.11642092 11.0171227 9.979700942 10.07426412 10.07208806 260403617 ahpC Stress Oxygen stress Dialister invisus DSM 15470 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Dialister;species:Dialister invisus; 8.331619334 8.652186504 8.808213099 8.068218843 8.240078501 8.250666431 8.196445619 8.264586973 8.57717596 8.816765858 8.519111977 8.35921831 162456995 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 9.11394072 9.144017261 8.98240492 8.576757581 8.587484345 8.605816173 8.862283537 8.439753609 8.988238969 8.5789789 8.701845867 8.787883775 256774742 fnr Stress Oxygen stress Streptomyces hygroscopicus ATCC 53653 8.926694052 8.96718409 8.574302622 8.574050371 8.531640009 8.373776965 8.247091172 8.504934161 8.807619447 8.460843735 123440611 CadA Metal Resistance Cadmium Yersinia enterocolitica subsp. enterocolitica 8081 9.093161548 8.839095344 9.163403458 8.238903365 8.175306062 8.181480682 8.564396507 8.31046263 8.354941306 8.415405353 8.385413319 8.376520511 90423833 ppx Phosphorus Phosphorus utilization Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.185734719 9.259823843 9.403788411 8.17225805 8.646679773 8.507442689 8.400557518 7.636828012 8.619475122 8.774077854 8.746425529 46199449 Catechol Organic Remediation Aromatics Other aromatics Thermus thermophilus HB27 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 8.398058765 8.605992395 8.048419012 7.918586496 7.885116161 7.957204497 8.09088603 7.948403581 7.895958022 8.069029175 78695344 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.46765191 8.631392508 8.489655085 7.30917816 7.713839249 8.104003685 8.604244692 7.822133316 8.552827333 8.057292622 8.149578258 7.819997394 89068382 bclA Organic Remediation Aromatics Aromatic carboxylic acid Oceanicola granulosus HTCC2516 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 8.851269492 8.709157233 8.462083978 8.904971236 8.707818586 8.351213757 8.768538786 8.801423192 8.680610462 8.570703388 8.710186382 8.704980185 85708548 sigma_70 Stress Sigma factors Erythrobacter sp. NAP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 8.440224218 8.637084252 8.588114572 7.699950008 8.070390645 7.79645242 8.110068201 7.781237993 7.960319357 257796826 pstA Stress Phosphate limitation Desulfohalobium retbaense DSM 5692 9.503594601 9.23679707 9.448152196 8.87682901 8.826242772 8.620420251 8.562311394 8.716644468 8.700433976 8.827056394 8.676719306 9.015908884 73538879 tfdA Organic Remediation Aromatics Chlorinated aromatics Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.433619421 8.592848935 8.791442386 8.645111698 8.543264087 8.290561295 8.529479598 9.015368516 8.637979129 8.923578783 8.563857947 8.873034055 113724267 nhh Organic Remediation Aromatics Nitoaromatics Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 9.106544818 8.941821265 9.041286645 8.519616903 8.291602393 8.291108376 8.181731553 8.18702963 8.290312644 8.284985944 8.35358394 8.574145933 222447452 pstB Stress Phosphate limitation Chloroflexus sp. Y-400-fl 7.93425487 8.04008127 7.402483788 7.505367603 7.635689418 7.546822759 7.73792069 7.315995673 7.305764158 7.139331855 255105381 obgE Stress Radiation stress Thalassiobium sp. R2A62 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Thalassobium; 8.142335227 8.347359622 7.604316103 7.587002013 7.86278028 7.715046283 7.790640644 7.948103462 7.974005645 8.037780515 7.965294985 10644441 pcpB Organic Remediation Herbicides related compound uncultured eubacterium superkingdom:Bacteria; 8.76310383 9.00192287 9.140375867 8.918932713 8.830321266 8.472344967 8.780415235 9.369570255 9.001750661 9.224453739 9.188853218 9.399426426 91976909 ahpC Stress Oxygen stress Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.72393679 8.592209776 8.418596638 8.404981152 8.548589027 8.70839784 8.470230643 8.521143316 8.829501418 8.395221276 8.50290552 8.479605268 32351176 CODH Carbon cycling Carbon fixation Stappia sp. M8 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Stappia; 8.25395245 8.083409283 8.201515756 8.113992242 7.79152705 7.818769479 8.336820632 8.261713391 8.229948898 7.919566933 8.096697383 127513453 cytochrome Energy process Energy process Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 8.282875447 7.977774859 8.392101413 7.222286136 7.266023644 7.711520224 7.869396804 7.170523842 7.517086888 7.234886204 7.427338305 121703954 AceA Carbon cycling Carbon degradation others Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 9.810064973 10.08260979 9.645803852 9.501054164 10.33216274 9.992427431 10.19723704 9.777033898 9.96649629 10.18178504 9.773863781 116608903 ara Carbon cycling Carbon degradation Hemicellulose Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 10.09251246 9.970652421 10.01046664 9.269589905 9.300596136 9.241911168 9.18129091 8.884589493 9.083398187 9.115704218 9.141594642 9.556324063 149202583 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.019998027 7.90345705 7.845927947 7.731310945 7.697903238 7.584748818 7.440000909 7.863126815 7.645688579 7.433583891 7.663725307 71892009 ahpC Stress Oxygen stress Candidatus Blochmannia pennsylvanicus str. BPEN superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Candidatus Blochmannia;species:Candidatus Blochmannia pennsylvanicus; 7.131046459 7.109004895 6.595494361 7.367662926 145048266 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Polynucleobacter sp. QLW-P1DMWA-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 8.114558202 8.333686139 7.911388077 7.408857564 7.708697619 7.362118785 7.02374787 7.362811978 7.263972321 7.692061955 145594741 carA Organic Remediation Aromatics Heterocyclic aromatics Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 8.809349549 8.964522365 8.828847457 8.7344724 8.827750656 8.405044783 8.441625573 8.782953934 8.652083792 8.80682504 8.966161414 8.902445389 134100570 4HBH Organic Remediation Aromatics BTEX and related aromatics Saccharopolyspora erythraea NRRL 2338 9.048805379 8.958291207 8.759968587 8.698753938 8.738847549 8.747725882 8.833765718 8.846610874 8.697447435 8.90569964 8.929834585 8.832664317 258512428 glnA Stress Nitrogen limitation Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 8.488172915 8.649863742 7.800733212 8.132894346 8.238266045 194292199 CadA Metal Resistance Cadmium Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 9.523906227 9.397306722 9.527394599 9.595177982 9.572708033 9.233254836 9.343946813 9.855806777 9.391852781 9.677238041 9.438720475 119454627 SmtA Metal Resistance Miscellaneous Lyngbya sp. PCC 8106 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Lyngbya; 8.139954738 7.948735708 6.768478781 6.921805797 6.547402757 7.510904938 84502231 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 9.796789984 9.974300563 9.405147176 9.188937051 9.803288119 9.693439685 10.20932099 9.932257396 9.984927449 9.402817416 9.749885186 9.749729505 111613455 phn Organic Remediation Herbicides related compound Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 8.676543257 9.126963568 8.537585496 8.799610362 9.246008955 9.121905082 9.480837737 9.111529314 9.057764668 8.788527568 9.07050842 8.78535296 145220123 ahpC Stress Oxygen stress Prosthecochloris vibrioformis DSM 265 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeovibrioides; 9.594413551 9.66671806 9.639128963 8.837885783 9.306922735 9.601415954 9.435230182 9.83728499 9.427017727 9.415665683 9.749410232 9.488084084 119444520 glucoamylase Carbon cycling Carbon degradation Starch Alteromonadales bacterium TW-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales; 8.160016215 8.042985929 7.40621175 7.332458397 134097246 ureC Nitrogen Ammonification Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 9.016446401 9.040320193 8.767334397 9.016211964 9.24089194 8.984835673 9.026772095 8.992061417 8.760261274 9.136940459 8.991567269 16124558 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 9.337903534 9.409137457 9.577506897 9.54116732 9.598155274 9.274074485 9.329318578 9.913737577 9.517576232 9.612343897 9.392921684 9.702093195 221194589 obgE Stress Radiation stress Atopobium rimae ATCC 49626 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Atopobium;species:Atopobium rimae; 11.00490855 10.84037898 10.78728408 10.61866535 10.15513731 9.900677286 78222371 TerC Metal Resistance Tellurium Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 9.137034242 9.248838453 9.215854139 8.552078898 8.398669247 8.468014477 8.590097639 8.214834842 8.376093232 8.191330858 8.606704744 255059273 dsrB Sulphur sulfite reductase Geobacter sp. M18 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.463257546 8.268310373 8.433174961 7.943758543 7.995547916 7.868589122 7.997979111 8.079872353 8.118478242 8.120558626 7.860556001 7.936704278 161388887 CODH Carbon cycling Carbon fixation Phaeobacter gallaeciensis BS107 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 8.273721635 8.062868977 8.455129998 8.6287254 8.621182151 8.502778101 8.840968024 8.699659446 8.608940524 8.624357554 8.798428125 8.266744972 116671967 atzB Organic Remediation Herbicides related compound Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8.982938307 9.060866539 8.914102404 8.49933775 8.404821146 8.467019647 8.9013503 8.703897676 8.728526914 8.504130547 8.443493737 8.509963283 282585399 sigma_70 Stress Sigma factors Pyramidobacter piscolens W5455 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Pyramidobacter;species:Pyramidobacter piscolens; 10.67413241 10.66533631 10.70253264 9.789649711 9.571900312 9.208621215 218218877 ChrA Metal Resistance Chromium Mitsuokella multacida DSM 20544 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Mitsuokella;species:Mitsuokella multacida; 9.447443917 9.386762637 9.109568992 8.418192877 8.536980191 8.315858336 8.12840416 8.040400032 7.908022686 7.932268585 8.441561706 18161783 narJ Stress Oxygen limitation Pyrobaculum aerophilum str. IM2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum aerophilum; 8.720141307 8.640936492 8.773326176 8.058761567 8.041165675 7.969849659 7.702451434 7.439489028 8.144522376 7.754877099 7.810545553 8.205626385 84705244 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Parvularcula bermudensis HTCC2503 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 8.551879851 8.507523298 8.702090561 7.798461978 7.816665835 8.011671534 8.253006767 7.688113529 8.323439804 8.054105799 8.164545623 7.958618922 26278814 narG Nitrogen Denitrification uncultured bacterium 8.525067797 8.212131066 7.929587766 7.972533277 8.377681621 7.957293047 8.340291295 8.05791738 8.132532508 8.280914161 7.944728078 217499556 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Shewanella baltica OS223 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 9.305077735 9.174601341 9.158893142 9.278393593 8.854316014 8.948920647 9.026792118 8.872752587 8.713425313 8.595040714 8.683806636 8.641450689 116248770 tfdB Organic Remediation Aromatics Chlorinated aromatics Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 10.06606068 10.31150829 9.982470689 9.507769357 9.648146061 9.964228601 10.25461769 9.780205499 9.938778247 9.663063714 9.979123267 9.858843141 124545520 katE Stress Oxygen stress Shewanella putrefaciens 200 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella putrefaciens; 8.481526585 8.635572827 8.823001317 8.100748261 7.799572825 8.137495797 7.616241416 7.141550442 8.09857465 7.68507293 7.767498598 7.993813285 78221812 Catechol Organic Remediation Aromatics Other aromatics Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 9.125588523 8.568962003 9.059240751 8.360488497 8.201470941 8.25269998 8.328274611 7.756139764 8.575742301 8.083137912 7.941891826 8.378456427 254471654 pstB Stress Phosphate limitation Pseudovibrio sp. JE062 8.270058805 8.565987087 8.400470718 7.948453586 7.754381854 8.199879789 8.343826506 7.797172851 8.184999146 7.843793743 7.876548859 7.91743325 120589685 B_lactamase_A Antibiotic resistance Beta-lactamases Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 9.523692696 9.51851733 9.533369658 8.959663013 8.784483909 8.79730797 8.859102649 8.810796764 8.850377766 8.92173443 9.107259247 9.091044682 126629956 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Marinobacter sp. ELB17 9.320828531 8.912008706 8.936877171 9.13507769 9.040607232 9.089346267 8.99093172 9.401621798 8.806931836 9.239427124 9.384047501 9.655208749 111611199 vanA Carbon cycling Carbon degradation Others Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 8.578511721 8.682101671 8.737350157 8.579149659 8.56471647 8.058235215 8.355968448 8.637613443 8.700819617 8.48277741 8.30175735 8.373967229 206679495 alkK Organic Remediation Others Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.650094688 8.575178735 8.498082248 8.482397391 8.140749677 8.179446156 8.309329154 8.476189104 8.819312773 9.033419553 8.865917019 260631396 hly virulence hemolysin Pasteurella dagmatis ATCC 43325 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Pasteurella;species:Pasteurella dagmatis; 8.741705055 8.637174164 8.689636774 8.229372806 8.229465361 8.304859885 8.401149984 8.06739343 8.401074314 8.367107614 8.160188925 8.474651939 133778508 endochitinase Carbon cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 8.332908891 8.175660367 7.864738959 8.031359738 7.906890897 7.774660654 7.532750502 7.859950782 7.505292098 38537139 ZitB Metal Resistance Zinc Populus balsamifera subsp. trichocarpa x Populus deltoides superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Streptophyta;order:Malpighiales;family:Salicaceae;genus:Populus; 8.721577582 8.488229141 8.649880276 8.077458229 8.091235532 8.113548108 8.477610597 8.04878674 8.99628371 8.062637768 7.827174251 8.289974675 218892354 type_III_secretion virulence secretion Pseudomonas aeruginosa LESB58 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.418980506 7.926151313 7.873070935 7.878050057 7.459743029 7.893725881 7.764107377 7.505738018 7.769239604 7.397078696 124009012 nplT Carbon cycling Carbon degradation Starch Microscilla marina ATCC 23134 8.89964193 8.737597944 8.552961574 8.062864828 8.473292125 8.786521072 8.011494509 8.971277763 88814399 xylA Carbon cycling Carbon degradation Hemicellulose marine actinobacterium PHSC20C1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 10.07031133 10.15168997 10.25086045 9.301304234 9.682083564 9.656775173 10.17738997 9.738011893 10.40522081 9.780412792 9.765542003 10.04052232 86196934 amyA Carbon cycling Carbon degradation Starch Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 8.576586525 8.647078838 8.899997577 8.342192103 8.202420629 8.050406968 7.875361506 7.862078669 8.214274893 8.150712146 8.391366904 192764408 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.526494707 9.446529047 9.394420608 9.239271976 9.034874573 8.818241702 9.227090634 9.173433647 9.258626969 9.222821078 9.414959494 8.812784864 149823051 pilin virulence pilin Limnobacter sp. MED105 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 8.030714692 7.820948859 8.142114273 7.06482893 7.246034379 7.243857659 7.091166265 7.507258335 7.185067888 7.410297144 7.648084443 148831542 fnr Stress Oxygen stress Erythrobacter sp. SD-21 8.872590529 9.096927492 9.185075461 8.58206567 8.700308042 8.392327785 8.363678037 8.268579934 8.361460696 8.295215987 8.466480594 8.754441877 26990767 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.72270323 8.939945891 8.651251973 8.810237204 8.70062184 8.67655573 9.030941278 8.881494864 8.496694038 8.942142999 8.917425853 8.791263498 125863155 dsrB Sulphur sulfite reductase Methanoculleus marisnigri JR1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanoculleus;species:Methanoculleus marisnigri; 9.00616665 9.047319394 9.130493494 8.76947784 8.543200343 8.408516298 8.357596907 8.519615249 8.425838948 8.561654785 8.334525457 8.779261376 116268722 CopA Metal Resistance Copper Polynucleobacter sp. QLW-P1DMWA-1 9.481372745 9.463318707 9.736611735 8.90706278 7.411730817 8.713763801 8.572619219 8.68216452 8.940633977 88802897 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Polaribacter irgensii 23-P superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Polaribacter;species:Polaribacter irgensii; 8.282546051 8.148443822 8.309363654 7.897989903 7.813820659 7.48452831 7.556456503 8.036749047 7.940991492 7.926762638 7.966870871 7.939582221 163857838 pstS Stress Phosphate limitation Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 8.184672129 8.372779228 7.787387946 7.719768133 8.003533957 7.338039787 8.10986907 7.557666348 7.49713468 7.987329853 81251106 gyrB other category gyrB Nitrosomonas sp. OZK11 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 8.263557822 7.978330903 8.125630043 8.499165378 7.841089747 7.690379901 7.973217252 8.077177545 8.072950964 8.150682603 8.015891607 7.912361015 148242812 SilA Metal Resistance Silver Synechococcus sp. RCC307 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.770749137 8.507543769 7.931365705 7.81257743 7.800913598 7.789772192 7.675089095 7.797214745 8.034396306 8.043658361 13813175 terminal_oxidase Bioleaching Electron transport Sulfolobus solfataricus P2 8.332056518 8.024588423 7.771398385 7.733181023 7.672569317 7.228128437 7.708269138 7.924148437 7.674558125 7.528160298 7.777047771 86146990 iuc virulence aerobactin Vibrio sp. MED222 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.440602961 7.076292763 7.02114609 7.574764209 7.307557325 7.482156824 7.147953495 7.454525784 218532617 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 8.361159058 8.60810458 8.314068198 8.152038967 8.201456297 8.053183435 8.226350677 8.461283921 8.489840613 8.116259692 8.129314323 88854957 glnA Stress Nitrogen limitation marine actinobacterium PHSC20C1 9.168644423 9.273037496 9.443919267 8.62239801 8.518506664 8.592832054 8.386188855 8.675837341 8.618867737 8.808843909 9.021332491 9.059478166 2982851 glnA Stress Nitrogen limitation Aquifex aeolicus VF5 7.262630053 7.253851633 6.886180072 7.053727456 7.655855858 7.070125999 7.119029495 238926251 clpC Stress Protein stress Selenomonas flueggei ATCC 43531 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas flueggei; 9.254415348 9.327263589 9.507436545 8.991153317 8.758558277 8.81274727 8.639519387 8.840568985 8.746913142 8.827329043 8.856712575 9.108836551 156254587 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.645785568 8.434831585 8.533543999 7.721340329 7.816482498 8.427377983 8.864694164 8.21150633 9.051463841 7.863686641 7.613192394 7.817260756 219869374 SMR_antibiotics Antibiotic resistance transporter Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 8.239293574 8.595570217 8.320180967 8.449675841 8.374548403 8.21824746 8.379060118 8.288444911 8.29183111 8.642852602 8.466677224 8.220751921 154000508 pstC Stress Phosphate limitation Candidatus Methanoregula boonei 6A8 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;genus:Candidatus Methanoregula;species:Candidatus Methanoregula boonei; 9.686781264 9.506156173 9.654354544 8.963523798 8.869233561 8.858481539 8.74185849 8.853473373 8.705816054 8.952975624 8.985401639 9.263078181 169856762 katE Stress Oxygen stress Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 8.74096046 8.771536238 9.115287061 8.170509933 8.042025547 8.334990249 8.31743072 8.049705251 8.331446409 8.302546561 8.346859858 8.343733827 88187735 CopA Metal Resistance Copper Methanospirillum hungatei JF-1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanospirillaceae;genus:Methanospirillum;species:Methanospirillum hungatei; 9.896958709 9.889317117 10.01518832 9.167469999 8.851755279 9.282442352 8.922751525 8.871962978 9.085353459 9.128280443 9.24382315 9.419103115 210065958 pheA Organic Remediation Aromatics Other aromatics Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 8.483088152 8.310196152 8.642313147 7.9723968 7.972617905 7.773568956 7.486737993 7.536061178 8.046919162 7.725232117 7.672285606 8.183371203 217976985 fnr Stress Oxygen stress Methylocella silvestris BL2 9.374913561 9.29137644 8.897186442 9.015091202 8.963942877 8.70931004 8.970515094 9.066090113 9.102597248 8.798866799 8.732804094 8.736734709 42558552 CadA Metal Resistance Cadmium Arthrobacter sp. B0430 7.864803648 7.604714157 7.994847534 7.685221891 7.649554541 7.588411836 7.556012183 167656053 CopA Metal Resistance Copper Eubacterium siraeum DSM 15702 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium siraeum; 8.199415589 7.889859858 6.921878104 7.092279309 7.084243559 7.704252887 6.731122536 7.439314944 7.53504375 6.981329097 7.26860439 195541889 fnr Stress Oxygen stress uncultured bacterium 1042 8.579098173 8.825257448 8.739340565 8.729221329 9.129118148 9.032145494 8.744570009 9.244952942 8.573006169 8.788881739 8.863723844 9.048616944 227530019 Tet Antibiotic resistance other Lactobacillus vaginalis ATCC 49540 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus vaginalis; 8.326148236 8.308174768 7.853813629 7.568203922 7.637484742 7.229154173 7.364006892 7.804984411 151302256 APS_AprB Sulphur adenylylsulfate reductase Desulfofrigus sp. HRS-La3x superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfofrigus; 8.695516093 8.688241923 8.323961065 8.971808456 8.464750915 8.039198318 8.488409337 8.37080445 8.496883397 8.221910527 8.102515375 8.070496853 219997462 CopA Metal Resistance Copper Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 8.433190125 8.718047395 8.273605082 7.718675668 7.725358045 7.92238206 7.47978808 8.602674061 8.566750679 8.228298294 178466148 fnr Stress Oxygen stress Streptomyces griseus subsp. griseus NBRC 13350 9.77337286 8.839162267 8.795672415 9.751201641 9.751936837 9.641252962 9.754286769 9.588929151 9.177868641 9.632812387 9.436443997 9.396937848 56695240 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 8.715904236 8.436209909 8.701644756 8.705573325 8.740729852 8.709093349 8.502606624 8.978481901 8.91693528 9.041517356 9.027046192 9.167836702 92116515 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 8.896536422 8.70501459 8.465938087 9.031225673 8.95335428 8.752267673 8.821718734 120589303 pimF Organic Remediation Aromatics Aromatic carboxylic acid Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 9.084761934 8.993238377 8.736674769 8.802339858 8.911321858 9.126538523 9.276731435 9.047909291 9.260590593 9.00114128 8.866371837 8.783666585 197773597 chnB Organic Remediation Other Hydrocarbons Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 8.915978886 8.923278754 8.596924484 9.156132837 9.034877163 8.966832755 145237016 tfdA Organic Remediation Aromatics Chlorinated aromatics Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 9.372442511 9.314749742 9.389060437 8.75598277 8.719787961 8.653027978 8.618981018 8.581917403 8.697127598 8.744426417 8.629394192 8.951058075 32443768 gyrB other category gyrB Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 8.510111842 8.124437451 8.338486592 7.526496307 7.796960331 7.337915201 7.695909891 8.124896348 7.770151246 7.79873106 119897406 gyrB other category gyrB Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8.602388328 8.650638595 8.779488194 7.798913593 8.942020629 8.796779807 8.871735529 8.120248378 9.102187671 8.456663938 8.620406883 121604894 katE Stress Oxygen stress Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8.460959161 8.438463949 8.450034836 8.324505335 7.956279818 8.360352359 8.584255621 8.287464737 8.387874412 8.137546957 7.962958679 7.982489373 119510977 linB Organic Remediation Pesticides related compound Nodularia spumigena CCY9414 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nodularia;species:Nodularia spumigena; 8.614517444 8.454515406 8.283620325 7.886064832 8.007972853 7.774410265 7.824561869 7.877467549 7.683785157 7.687448385 8.131015964 168700394 sigma_70 Stress Sigma factors Gemmata obscuriglobus UQM 2246 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata;species:Gemmata obscuriglobus; 9.028413166 9.03834408 8.525378892 8.992329977 8.533093448 9.015192116 9.448769443 9.011504769 8.885506793 8.584750658 8.847483828 8.771794805 210067957 nagG Organic Remediation Aromatics Aromatic carboxylic acid Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 9.615495402 9.46916707 9.74376275 8.83055118 9.007078374 9.398497895 8.997669124 9.017920421 9.183544183 9.601604397 9.609383841 9.53529865 186477252 hrcA Stress Heat shock Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 9.240807136 9.168920239 8.889927772 8.670674684 8.46939232 8.104497732 8.454451805 8.617418987 8.910249554 8.580572581 8.485130072 8.597012964 21223300 pcc Carbon cycling Carbon fixation Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 9.958126481 9.264564674 9.592916202 10.22513605 9.770839048 9.259944816 9.919231243 9.986434692 9.836995886 9.866214298 9.764748532 9.041302006 109452500 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.458201889 8.23875138 8.33674842 8.522677229 8.364607229 8.453002677 8.361060356 8.708553695 8.45843194 8.411629575 8.504471101 219849113 sigma_24 Stress Sigma factors Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 8.601002494 8.455551234 7.68581826 7.829542368 7.847228892 7.792739687 7.375055428 7.765282044 7.793231832 8.003105907 209871581 ChrA Metal Resistance Chromium Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 8.417978323 8.591795998 8.166586109 8.519858304 8.213281132 8.196746757 8.651178459 8.345430634 8.652110846 8.729280448 8.142535361 219996192 sigma_24 Stress Sigma factors Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 8.796975912 8.601897392 8.852981653 8.583470984 8.347885804 8.611883335 8.298677921 7.691571738 8.247025396 7.740709772 8.447405111 8.362475559 71557758 type_III_secretion virulence secretion Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 8.8988229 8.745921054 9.131212501 9.175243617 9.029173616 9.004002786 8.759771447 9.420425339 8.521272285 9.059023412 9.041188569 9.55607094 198260563 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 8.243049888 8.294195728 8.212791655 7.516385583 7.631573027 8.042135773 8.114633363 7.705435282 8.511216118 7.721888584 7.483176416 7.926181341 86159087 cytochrome Energy process Energy process Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 8.925980814 8.809816141 9.103928144 8.834872991 8.722016697 8.20900222 8.765785937 8.972637547 8.661723561 8.569935133 8.337558103 8.542919042 172040173 sigma_24 Stress Sigma factors Corynebacterium urealyticum DSM 7109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium urealyticum; 9.785530941 9.782095328 9.427254451 9.226709118 9.655285098 9.564206178 9.957354549 9.681393503 9.594890084 9.483281219 9.783748769 9.668431638 23305819 phenol_oxidase Carbon cycling Carbon degradation Lignin Phaeosphaeria halima superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria; 8.889817819 8.876149579 8.843050019 8.287558211 7.903625634 8.010646672 7.68398616 7.52342611 8.136536307 8.070409067 8.723538792 25027338 sigma_24 Stress Sigma factors Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 8.641276473 8.360896068 8.708379009 8.157081395 7.822559481 7.878003167 7.774015398 7.825026259 7.882207184 7.977093848 7.776201486 8.045912513 149793442 sigma_70 Stress Sigma factors Thermosipho melanesiensis BI429 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermosipho;species:Thermosipho melanesiensis; 8.35930231 8.274547756 8.343160842 7.328922764 7.313271193 7.292257777 7.261786799 6.794178666 7.197251944 7.306376771 7.543650994 227339510 type_III_secretion virulence secretion Rhizobium sp. NGR234 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 9.108909156 9.032414349 9.19672929 9.15980104 8.997684069 9.038389541 8.844449232 8.632966287 92434474 nmoA Organic Remediation Aromatics Nitoaromatics Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.717753714 8.613936194 8.596638815 8.860613101 8.532502702 8.203978195 8.742495971 8.663033175 8.675986293 8.492591894 8.347846184 8.516863019 46917318 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.245819026 8.15804988 8.366085151 8.390276406 8.26425905 8.084194706 8.496204791 8.736613734 8.564196169 8.624316868 8.335467976 8.320047769 15893400 APS_AprA Sulphur adenylylsulfate reductase Clostridium acetobutylicum ATCC 824 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium acetobutylicum; 9.214179079 8.810305152 8.68685581 8.187823932 8.274309985 8.105688461 222082417 nmoA Organic Remediation Aromatics Nitoaromatics Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 9.840448413 9.617913511 9.406595622 10.27564811 10.12488031 9.875109616 9.878931525 10.40768654 9.970219925 10.06631157 9.984377805 10.05306508 26278846 narG Nitrogen Denitrification uncultured bacterium 8.733744578 8.394388293 8.695562182 8.402541409 8.304875346 8.135532273 8.087645189 8.239699822 8.190258008 8.289488878 8.138537006 8.295511123 163795184 xylJ Organic Remediation Aromatics BTEX and related aromatics alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 8.58601338 8.585126621 8.401026834 8.216079803 8.255254309 8.047626312 8.106207554 8.649005558 8.438999081 8.447883984 8.183122366 8.269107221 187777005 pstB Stress Phosphate limitation Clostridium sporogenes ATCC 15579 8.950728023 8.87385357 8.968213347 8.413553968 8.255837041 8.296832269 8.046149718 7.735508372 8.121251976 8.054370819 8.196069804 8.380834481 218252785 cda Carbon cycling Carbon degradation Starch Mitsuokella multacida DSM 20544 8.801650306 8.744718976 8.709175923 8.233327582 8.34911268 8.464144831 8.391023928 8.217153007 9.149517733 8.401385731 8.45564503 8.464517033 225173868 pstB Stress Phosphate limitation Desulfonatronospira thiodismutans ASO3-1 8.392269493 8.695492965 8.542294819 7.906386858 7.562552811 7.024910429 227069613 NiR Nitrogen Assimilatory N reduction uncultured archaeon 8.520364418 8.1257075 8.485899663 8.092764535 8.196713841 8.439935292 8.256508935 8.022225356 7.963146099 8.030747272 7.758245992 186472054 nmoA Organic Remediation Aromatics Nitoaromatics Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.544377945 8.26762554 8.228042458 8.146595108 8.178747127 7.896835682 8.048265031 8.257122344 8.232388652 8.14639685 8.135489068 7.953883762 146192177 4HBH Organic Remediation Aromatics BTEX and related aromatics Bradyrhizobium sp. ORS278 8.319964485 8.061772177 8.197202407 8.66159251 8.266461533 7.919333588 8.396742753 8.533171695 8.358913189 8.353332796 8.615136494 7.940105339 49613798 CadA Metal Resistance Cadmium Erwinia carotovora subsp. atroseptica SCRI1043 9.828228967 8.916639383 8.85528451 9.988020155 9.336677098 9.464416142 164510699 dnaK Stress Heat shock Opitutus sp. VeGlc2 9.539874399 9.469039281 9.759403008 9.157282851 9.279936437 9.290728927 9.255464839 9.340915881 9.15442148 9.226903602 9.44460303 9.361299238 151302329 APS_AprA Sulphur adenylylsulfate reductase Desulfomonile tiedjei 7.948563891 8.539368857 8.506368114 8.201657595 7.856161039 7.83907221 7.914004985 8.113327192 8.011657915 8.327389501 8.592632428 198283794 CopA Metal Resistance Copper Acidithiobacillus ferrooxidans ATCC 53993 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 8.782723261 9.069662275 8.865090138 7.943328568 8.650473823 8.734199908 9.100815629 8.190214494 8.29019031 8.660932278 8.678687073 159179582 xylJ Organic Remediation Aromatics BTEX and related aromatics alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 8.717262555 8.534088026 8.400841509 8.715965477 8.365593134 8.072737334 8.305468486 8.372096274 8.373280987 8.461714294 8.450078789 7.912018643 119964257 TehB Metal Resistance Tellurium Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 8.393610517 8.528278095 8.595357927 8.164402531 8.028006102 7.975760569 8.016634799 8.147790681 8.19574425 8.238490085 7.976065124 8.373867811 158339615 sigma_70 Stress Sigma factors Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;genus:Acaryochloris;species:Acaryochloris marina; 11.29728437 11.0972793 11.12213225 10.27123878 10.36973325 9.716021809 10.03631037 11.06602815 10.58692026 10.63953477 10.65158178 76876265 sigma_24 Stress Sigma factors Pseudoalteromonas haloplanktis TAC125 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas haloplanktis; 8.397756305 8.68468233 8.698456715 7.954741098 7.566409018 7.995870648 7.719399423 7.264765306 8.080128755 7.678121283 7.651477651 7.944581748 255060611 hydrogenase Energy process Energy process Geobacter sp. M18 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.211954011 8.184433999 7.774245399 7.752226493 7.58919804 7.436103196 7.58205851 7.768919614 8.033478634 7.953122447 8.053320975 213955438 iro virulence Capnocytophaga sputigena Capno superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga sputigena; 8.738141122 8.557885059 8.531635004 8.634859768 8.41989824 8.288095435 8.658381127 8.453349299 8.976554384 8.447056203 8.529859344 8.596563349 38619365 type_III_secretion virulence secretion Pseudomonas sp. KD superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.788310846 8.679818759 8.694626556 8.988120019 9.025735275 9.056742877 8.564505902 8.418793654 113951416 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Shewanella baltica OS195 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 9.205997276 8.660106949 8.972960265 9.063785573 8.918607925 9.058727361 8.979682659 8.399541442 8.637508943 8.676595982 8.620956367 261854644 pilin virulence pilin Halothiobacillus neapolitanus c2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Halothiobacillaceae;genus:Halothiobacillus;species:Halothiobacillus neapolitanus; 8.973617808 9.188464226 8.920367329 8.422637446 8.542590246 8.721126952 8.687193949 8.312941114 8.878488749 8.538339546 8.817315687 8.507660381 18034263 APS_AprA Sulphur adenylylsulfate reductase Syntrophobacter wolinii superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter; 8.678567705 8.424755402 8.722828466 8.291062363 8.275532636 7.927805785 7.815838282 8.5156193 8.204517309 8.479181119 72123018 nagG Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 7.903503172 7.69169849 7.774351399 7.770500246 7.500801677 7.62097715 7.756498099 56695454 mer Metal Resistance Mercury Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 9.664267468 9.594444158 9.627463967 9.207281439 9.396458819 9.410953944 9.326124838 9.202731309 9.372816791 9.186757055 9.575756513 9.255055626 255298686 katE Stress Oxygen stress Corynebacterium tuberculostearicum SK141 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium tuberculostearicum; 8.78432636 9.150160566 8.759793851 8.974118567 9.250744473 9.1601253 9.533467099 9.44198223 9.447310211 9.621446077 9.685197233 9.617468359 62425089 ppx Phosphorus Phosphorus utilization Brevibacterium linens BL2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium linens; 8.427730842 9.05024576 8.906965935 8.51902452 8.468088304 9.196526762 9.495182222 8.902679019 9.196906058 8.700101844 8.625372078 9.099484025 118655662 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 8.131792843 8.358879595 8.02379072 8.059643486 8.190907794 8.276298404 8.293490881 8.518063345 8.35602403 8.500582296 8.2467185 15625032 sox Sulphur Sulphur oxidation Rhodovulum sulfidophilum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodovulum; 8.608345144 8.35264645 8.48703992 8.251299323 8.301360476 8.026317334 8.321885813 8.699660781 8.4304585 8.347281935 8.276825822 257798314 APS_AprB Sulphur adenylylsulfate reductase Desulfohalobium retbaense DSM 5692 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium;species:Desulfohalobium retbaense; 8.513794622 8.290159541 8.309140211 8.716958054 9.035936528 8.903310081 8.222857874 8.849672287 8.20479077 8.853921916 8.926452191 8.991965515 256677175 katE Stress Oxygen stress Streptomyces sp. SPB78 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.199354789 7.88790417 7.727062678 8.394271043 7.923352198 7.744161158 8.128315077 222877587 nrfA Nitrogen Dissimilatory N reduction Campylobacter rectus RM3267 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter rectus; 8.181959956 8.168244812 7.243514783 7.232287596 7.256476916 6.858173077 6.97811391 7.222789168 7.231422694 7.255503315 205824725 bphA Organic Remediation Aromatics Polycyclic aromatics Hyphomonas sp. OC5 8.944304848 8.708824418 8.983668187 8.316896162 8.20612608 8.322577854 7.974893067 7.887495806 8.037903047 8.014376977 8.076920927 8.329894634 221168397 iro virulence Burkholderia multivorans CGD1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 8.647893955 8.589824985 8.622615804 8.028507686 8.109617971 7.963794709 8.562351091 8.153013736 8.898600846 8.118398677 8.055365649 8.04253296 247534485 obgE Stress Radiation stress Aggregatibacter aphrophilus NJ8700 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Aggregatibacter;species:Aggregatibacter aphrophilus; 8.140323085 8.134813409 7.387278529 7.623064334 7.495428603 7.521637871 7.507312501 7.75979317 7.456334699 7.634198534 7.53143952 85708474 AceA Carbon cycling Carbon degradation others Erythrobacter sp. NAP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 9.546369828 9.563248739 9.704432104 9.323630331 8.870563452 8.744554545 84362067 tfdA Organic Remediation Aromatics Chlorinated aromatics Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 8.311426808 8.382256083 8.02513314 7.968835754 8.367431084 8.562518541 8.199458179 8.342265833 8.194887285 8.263876331 8.042321113 83415014 gyrB other category gyrB uncultured bacterium superkingdom:Bacteria; 8.525944785 8.412725742 8.862909019 7.822384906 7.653852876 7.237913177 7.213176011 7.847396156 7.916066083 7.835304634 7.967191182 97954678 nirK Nitrogen Denitrification Ochrobactrum sp. R-25018 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum; 9.109173459 8.868195061 8.720468338 8.858727029 8.790513394 8.444908427 8.481253115 8.728038356 8.779283494 8.490844183 8.588643544 8.577908842 148557493 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.270958077 8.165895408 7.789219319 7.56159255 7.938019708 8.155067944 7.697288255 8.4726028 7.496952624 7.459216519 7.497167513 167772136 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Anaerotruncus colihominis DSM 17241 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Anaerotruncus;species:Anaerotruncus colihominis; 8.999481786 9.037794229 8.954659393 8.590861402 7.613480024 8.098583824 8.6402383 8.236994664 8.363218272 8.211447258 8.20672291 66864085 exaA Organic Remediation Chlorinated solvents Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.780043658 9.116754717 8.890734365 9.129956909 8.977597053 8.766853093 9.24498406 9.122610891 8.614853255 9.001973683 8.915095195 8.844546393 125498651 pimF Organic Remediation Aromatics Aromatic carboxylic acid Streptococcus sanguinis SK36 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus sanguinis; 8.140541737 8.05878461 7.670355067 7.564215234 7.67909776 7.217107632 7.868658909 8.000256072 8.254506763 8.076455451 87280998 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.529236665 7.473839966 7.239909725 6.668419531 7.217038532 7.47512396 7.418160594 7.259933197 149125064 pcpE Organic Remediation Herbicides related compound Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 8.365753641 8.54690703 8.590279286 7.980827903 8.193559968 8.252335792 8.468724584 7.645299254 8.667294546 8.123286471 8.131039648 8.237917932 84516932 AceB Carbon cycling Carbon degradation others Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 8.720527931 9.012477919 8.723821953 7.584230847 7.816239971 8.017383933 7.580709784 7.375252192 7.837492698 3006137 CopA Metal Resistance Copper Schizosaccharomyces pombe 8.902304591 8.697385 8.888995397 8.63596544 8.900515241 9.167372519 9.079000652 9.069443426 8.906995987 8.807190637 9.120014201 9.033923765 170721883 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.783522088 8.53954727 8.668794187 8.590428595 8.125796262 8.092458506 8.132705911 8.038940711 8.218543372 8.074442253 7.64443456 8.221628715 241767493 iro virulence Acidovorax delafieldii 2AN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax delafieldii; 9.582550628 9.647672237 9.508955404 9.114505188 9.11217809 9.017819863 9.02079683 8.965175497 8.869237404 9.022686526 8.983719893 9.338689741 28542653 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.364181539 8.147270807 8.445259316 8.537322243 8.677057161 8.643938922 8.322186586 8.749900661 8.125403914 8.803317535 8.787362964 8.75858186 163738999 phn Organic Remediation Herbicides related compound Phaeobacter gallaeciensis BS107 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 10.10804087 10.08341721 10.17323564 9.906364579 9.789564929 9.452599091 9.57600022 9.675472845 9.726971692 9.572201811 9.529294838 9.877088883 84498092 pcc Carbon cycling Carbon fixation Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 9.025691316 9.366023308 9.329051443 9.065150581 9.449548267 9.187135083 9.291976183 9.541462344 9.086476829 9.526493934 9.353864655 9.114585858 254292716 phoB Stress Phosphate limitation Hirschia baltica ATCC 49814 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hirschia;species:Hirschia baltica; 8.383896786 8.622851399 8.486351034 8.338886556 8.702187184 8.589511889 8.744676467 9.014114652 8.669082423 8.816477947 8.674261345 8.17039292 157402942 trzN Organic Remediation Herbicides related compound Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 8.457662962 8.34180312 8.362634571 8.223578209 7.928621586 7.874188153 8.090831649 8.514418494 8.044766892 8.042209452 8.231190117 78036800 pilin virulence pilin Xanthomonas campestris pv. vesicatoria str. 85-10 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas euvesicatoria; 8.257055256 8.362750752 8.361006092 7.848689918 7.617378801 7.837571828 7.857411985 7.823693832 8.273745488 7.777194358 7.888378901 7.636846877 89046717 ureC Nitrogen Ammonification Oceanicola granulosus HTCC2516 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 8.778372866 8.974104985 8.757882685 9.181812157 9.303177942 9.129871028 9.083233513 9.542127834 9.035261623 9.387958156 9.2065159 9.359326479 39997730 amyA Carbon cycling Carbon degradation Starch Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 9.588472625 9.729678841 9.662226528 9.080917941 8.736924073 9.009864376 8.979859386 8.747725945 8.681446963 8.749291868 8.908913084 9.080243181 74053816 todC Organic Remediation Aromatics BTEX and related aromatics uncultured bacterium 8.465284593 8.687205007 7.870984899 7.67263715 7.976319891 8.232120789 7.824000476 8.264780329 7.957148355 7.678659918 8.015658775 111145988 nagG Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas sp. MT1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 9.170293522 8.887891664 9.046460461 8.299886759 8.179479471 8.272958664 8.673928724 8.179971651 8.311736533 8.326436236 8.757758863 257454829 cydB Stress Oxygen limitation Enhydrobacter aerosaccus SK60 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Enhydrobacter;species:Enhydrobacter aerosaccus; 9.258840391 9.133679198 9.094705499 8.746597577 8.672477498 8.528267855 8.447423261 8.396185121 8.542032086 8.378885444 8.395592491 8.921987367 187919791 nhh Organic Remediation Aromatics Nitoaromatics Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8.609900819 8.127315301 8.194984662 7.971507105 7.924986306 8.255678734 8.068546466 8.026033252 8.286904697 7.811774735 8.069514626 7.824484393 159180263 mer Metal Resistance Mercury alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 8.890187634 8.607610921 8.574847852 8.416697536 8.371683206 8.307842833 8.455520482 8.342576616 8.677729851 8.428355612 8.50401776 8.337344228 118703608 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.10730435 7.98074847 8.190317058 8.102105044 8.04037187 7.766112222 7.924186028 8.439793718 8.023857474 8.193274313 7.839656316 8.185524026 88931093 gyrB other category gyrB Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 9.841614521 9.651919453 9.577464037 9.692560795 9.745796467 9.804812728 9.484223472 9.977652915 9.501733962 9.671511115 9.842690714 9.557680826 85069244 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.552040006 8.181815364 8.278249348 7.420428948 7.42874722 7.524440753 7.400679366 7.155944825 7.853241149 7.416259613 7.42826226 7.657783424 288961688 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum; 8.842040599 8.84966414 8.751063477 8.523733655 8.728007492 8.304083751 8.600818439 8.896697603 9.061329072 8.725581778 8.53467299 8.716482202 39646173 phytase Phosphorus Phosphorus utilization Peniophora lycii superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Russulales;family:Peniophoraceae;genus:Peniophora; 8.557109276 8.326410743 8.445724608 7.903346036 7.781829061 7.862706187 7.640644442 7.292743039 8.03254038 7.676838364 7.47474547 8.035700091 119766100 pilin virulence pilin Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 11.19004434 10.92220055 11.19446054 10.40906486 10.47668107 10.53577038 10.81908009 10.67736243 10.91680571 10.30290253 10.65907613 84621717 amyA Carbon cycling Carbon degradation Starch Xanthomonas oryzae pv. oryzae MAFF 311018 8.085683655 8.252975909 8.238005632 7.958422315 7.402286582 7.56978807 7.725285954 7.324320012 8.313659721 7.615761212 7.461700533 7.527434131 218240628 nplT Carbon cycling Carbon degradation Starch Alicyclobacillus acidocaldarius LAA1 8.841606886 8.967528678 9.06002243 8.402275359 8.320054503 8.449849839 8.175889471 8.220920782 8.384038469 8.163067464 8.303998932 8.555947568 28628931 nifH Nitrogen Nitrogen fixation Methylomonas rubra superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomonas; 7.080391242 7.267907189 12721990 napA Nitrogen Dissimilatory N reduction Pasteurella multocida subsp. multocida str. Pm70 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Pasteurella;species:Pasteurella multocida; 8.469756999 8.556235951 8.796327853 7.604232413 7.923420424 8.044061259 7.909712072 8.010206725 8.349392205 8.080770177 8.344252225 7.913447484 34499661 sigma_32 Stress Sigma factors Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 8.561760392 8.389321968 8.216977104 7.677027506 7.792937075 7.887912505 8.0752971 7.681763929 8.151620278 7.981521083 8.15478097 8.039274657 60328254 katE Stress Oxygen stress Rhodococcus equi superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.272955876 8.428147573 8.170842735 7.925749133 7.659170114 8.074711105 7.926333671 7.716415839 7.835898714 7.956741998 7.889745581 84704101 aclB Carbon cycling Carbon fixation Parvularcula bermudensis HTCC2503 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 9.783501114 9.813829092 9.549715561 9.40867587 9.271356159 9.291161621 9.756314378 9.365789185 9.608095163 9.221587959 9.26891465 9.39415331 255106588 AceB Carbon cycling Carbon degradation others Thalassiobium sp. R2A62 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Thalassobium; 7.622507805 8.201592686 8.017848901 8.119354981 8.207247556 8.100177513 8.179174103 8.269111775 8.267219136 3172510 Xamo Organic Remediation Other Hydrocarbons Ralstonia eutropha superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.269583527 8.369407159 8.035188567 8.298306668 8.214572463 8.081101999 8.49483837 8.46610246 8.515236779 8.45619747 8.239074241 153796145 CopA Metal Resistance Copper Ruminococcus gnavus ATCC 29149 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus gnavus; 7.314076246 6.91578822 159029700 clpC Stress Protein stress Microcystis aeruginosa PCC 7806 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 9.313527294 9.166582964 9.230194052 9.002222654 8.652776325 9.110380474 9.093075602 9.210581353 9.387960164 9.809273736 9.847981503 9.291001107 154251285 tfdA Organic Remediation Aromatics Chlorinated aromatics Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 8.528079188 8.628797341 8.628367675 8.130487156 8.323142676 8.430530667 8.309918188 8.242603687 8.587732851 7.987330342 8.222999611 8.105024134 227951637 pstA Stress Phosphate limitation Meiothermus silvanus DSM 9946 8.924678918 8.892758111 8.971963405 8.352639064 8.326953929 8.434660108 8.352337274 8.21810445 8.604622391 7.908793606 7.823364755 8.41571855 5931577 phdA Organic Remediation Aromatics Polycyclic aromatics Nocardioides sp. superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 9.612133124 9.611759036 9.825550406 9.344442992 9.335764705 229214780 ahpC Stress Oxygen stress Dethiosulfovibrio peptidovorans DSM 11002 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Dethiosulfovibrio;species:Dethiosulfovibrio peptidovorans; 8.535548866 8.283148591 8.591811711 7.600899492 7.508449087 7.652785022 7.297564883 6.935011357 8.075250196 7.451449026 7.65518884 7.756426208 72161684 pimF Organic Remediation Aromatics Aromatic carboxylic acid Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 9.83784445 8.922830751 8.54513865 9.734464025 9.324163938 9.058944401 9.866637058 9.59727491 9.512728364 9.328792068 9.412710918 255284099 ppk Phosphorus Phosphorus utilization Bryantella formatexigens DSM 14469 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;species:Bryantella formatexigens; 8.539479083 8.591589028 8.658046473 7.689065402 7.861996484 8.078346422 8.027167253 7.567386912 7.996019533 8.036460596 45680 xylF Organic Remediation Aromatics BTEX and related aromatics Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.408156201 8.050554673 8.203227905 8.367871089 8.368697409 8.463289121 7.854455408 8.626862506 8.208988247 8.378157336 8.55036159 8.364117247 149832 glnA Stress Nitrogen limitation 8.310213653 8.244376314 7.48647664 7.2041272 7.331340957 7.257747542 6.993123294 7.200558334 7.030775031 7.23626219 114054980 aclB Carbon cycling Carbon fixation Balnearium lithotrophicum superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Desulfurobacteriaceae;genus:Balnearium; 9.381295883 9.197518394 9.474565133 8.949312212 8.659285169 8.500001546 8.423546167 8.323192473 8.481832383 8.591519274 8.636703844 221315650 proV Stress Osmotic stress Bacillus subtilis subsp. subtilis str. NCIB 3610 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 8.127325418 8.009042708 8.049827586 7.867682395 8.072575523 8.019968249 8.190346505 8.103811378 8.242741353 8.120355022 7.991092778 110224952 gyrB other category gyrB Streptococcus bovis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 7.996939517 8.137759417 6.915263105 7.388572075 251777003 cytochrome Energy process Energy process Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.443246798 8.566150749 7.905730874 7.973327395 8.144907448 7.99008891 7.797219255 8.030731075 8.010287014 8.149346826 8.034519572 256358550 sigma_24 Stress Sigma factors Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 8.359847685 8.236517387 8.356085251 8.22904497 7.929382946 7.494183 7.9331266 8.369355707 8.096698266 8.139133139 8.480541824 149819550 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 8.601844393 8.658142981 8.681277578 8.314673066 8.36741748 8.141847951 8.230175749 8.547522555 8.349463094 8.380550505 8.533994871 8.418239133 108765660 pcaG Organic Remediation Aromatics Other aromatics Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 8.408508311 8.514471474 8.6650086 8.728976498 8.741701458 8.514006867 8.769775587 9.022837416 8.765173378 9.169306663 8.63000864 8.696992457 77019732 ArsA Metal Resistance Arsenic Rhodococcus erythropolis PR4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 8.770890046 8.615633762 8.61585947 8.371212861 8.246520033 8.360909377 8.466864939 8.103611502 9.126504139 7.821779003 7.756102807 8.095864672 262203784 pstB Stress Phosphate limitation Gordonia bronchialis DSM 43247 8.637821801 8.647354692 8.940157491 8.000743613 8.181845313 8.457798477 7.872918344 9.296040644 7.985235433 7.908548148 7.954609769 84383340 TerC Metal Resistance Tellurium Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 8.941137131 8.866195316 8.902699856 8.634517717 8.682111989 8.573131274 9.147893435 8.559541274 9.319979011 8.340995354 8.476207065 8.131311783 54015494 TerD Metal Resistance Tellurium Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 8.865983372 8.708288763 8.896740654 8.476170034 8.478723267 8.19654013 8.366474877 8.586263892 8.764382004 8.416647177 8.210316709 8.337389349 17546017 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia solanacearum GMI1000 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 9.781935354 9.534579898 9.530837237 9.717399957 9.665225811 9.614329467 9.98930316 10.00005338 9.983684731 9.884119793 9.809748762 9.780100292 187919593 MFS_antibiotic Antibiotic resistance transporter Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 11.26214857 11.45522071 11.49243136 11.40196854 11.38594012 11.10678652 10.71854175 10.83518819 11.51267311 11.22234983 11.15628213 11.08439903 53722692 nmoA Organic Remediation Aromatics Nitoaromatics Burkholderia pseudomallei K96243 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 9.453046625 9.321332151 9.321266657 8.647640459 8.368138396 8.220774005 8.838743041 8.501044873 8.969575341 8.716336098 8.748956152 8.760600989 212704969 pstS Stress Phosphate limitation Desulfovibrio piger ATCC 29098 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio piger; 8.593086025 8.384557781 8.789955109 8.131477275 8.126862232 8.00465798 8.323235265 7.83485634 8.885630694 8.259281074 8.124183137 7.921241055 76876845 phenol_oxidase Carbon cycling Carbon degradation Lignin Pseudoalteromonas haloplanktis TAC125 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas haloplanktis; 9.648454695 9.613345234 9.804891604 10.1327082 10.08133473 9.856999741 10.24096685 10.24421893 9.889704077 10.1155389 10.04263495 9.768853614 157371970 proX Stress Osmotic stress Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 8.589199688 8.391163062 8.162879732 8.276894889 8.286679265 8.417876755 8.560692383 8.829009162 8.621750836 8.708339506 8.47055276 8.323706879 154505603 bco Organic Remediation Aromatics Aromatic carboxylic acid Ruminococcus gnavus ATCC 29149 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus gnavus; 8.1517782 8.26779031 8.38033733 7.590269754 7.987890117 7.910484869 8.131104883 7.826392336 7.965887584 7.938221994 8.258397227 18160974 dsrA Sulphur sulfite reductase Pyrobaculum aerophilum str. IM2 8.068754037 8.015429527 8.361035002 8.216349071 8.146874634 8.025040407 8.175922494 8.428281831 8.449388003 8.280512452 7.869241849 8.224660801 41408404 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 8.017190193 8.296414194 8.340152128 8.42054519 8.430641889 8.332704429 7.977412363 8.543810348 8.4919751 8.355312684 8.281322746 7.805825908 85858649 bclA Organic Remediation Aromatics Aromatic carboxylic acid Syntrophus aciditrophicus SB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Syntrophus;species:Syntrophus aciditrophicus; 8.726532746 8.647855839 8.548917717 8.550257378 8.510766266 8.375728672 8.742448111 8.595222762 8.260063957 119535075 pcc Carbon cycling Carbon fixation Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 9.585449544 9.648500887 9.638403367 9.247783593 9.325256105 9.668204383 9.480753922 9.778862813 9.379518295 9.701425341 9.421950268 255261248 Tet Antibiotic resistance other Thalassiobium sp. R2A62 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Thalassobium; 10.00716337 10.26093181 10.19436295 8.748004303 9.092202588 9.461356357 9.057823738 9.218278976 84696032 nagG Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 9.271152562 9.094032321 9.239491447 8.863731532 8.448063627 8.159758837 8.074366645 7.904380509 8.221943715 8.042467332 8.02915342 8.295654775 256789171 ureC Nitrogen Ammonification Streptomyces lividans TK24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces lividans; 9.071188553 8.995623879 9.154536876 8.622510433 8.459753141 8.645604312 8.766388632 8.835940904 8.738904008 8.996116081 8.753880602 8.969668576 154247159 nagG Organic Remediation Aromatics Aromatic carboxylic acid Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 9.350634365 9.180473145 9.012899887 9.450579674 9.32844764 9.137170807 9.66322903 9.434266973 9.214909297 9.308831608 9.220096514 9.368850395 226941448 oxyR Stress Oxygen stress Laribacter hongkongensis HLHK9 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Laribacter;species:Laribacter hongkongensis; 8.49192106 8.371636988 8.336309307 8.705177008 8.513903612 8.529090928 8.427904228 8.73128196 8.399647367 8.584137978 8.710630288 8.795048885 260087302 amyA Carbon cycling Carbon degradation Starch Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 9.096840983 8.846402657 8.370126103 9.306664629 9.406091793 9.185212661 8.924502988 9.62216952 8.706334768 9.099166836 9.100207405 9.420726457 157145653 catB Organic Remediation Aromatics BTEX and related aromatics Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 8.463853198 8.432157448 8.318350944 8.238172466 7.976184995 7.792346584 7.906563815 8.116114432 8.272301499 8.049692584 7.912845634 8.205033235 22295646 CopA Metal Resistance Copper Thermosynechococcus elongatus BP-1 8.354538574 8.126336958 8.51639558 269125899 rubisco Carbon cycling Carbon fixation Thermomonospora curvata DSM 43183 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora;species:Thermomonospora curvata; 9.450261615 9.480599754 9.490475318 8.883327007 8.699346337 8.638936541 8.872249803 8.564520083 8.977149804 8.581976151 8.707848037 8.856475433 161985176 ChrA Metal Resistance Chromium Acholeplasma laidlawii PG-8A superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Acholeplasmatales;family:Acholeplasmataceae;genus:Acholeplasma;species:Acholeplasma laidlawii; 8.680849503 8.266966232 8.731554787 8.057959021 7.810224126 7.866085068 7.397279754 7.507042241 8.151153813 7.868676124 7.568355106 7.970286662 187985210 BpH Organic Remediation Aromatics Aromatic carboxylic acid Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7.97832942 7.925138101 7.999192774 7.99099462 7.943993615 7.813528374 7.940663718 7.766571635 7.936192115 7.788243989 7.844643912 150036094 sox Sulphur Sulphur oxidation Chlorobium limicola superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium; 8.436028562 8.545692934 8.443093977 8.193360606 8.785737202 8.985925963 9.093235008 9.158723734 8.983620797 8.976325146 9.255864106 9.13409577 169627615 TerC Metal Resistance Tellurium Mycobacterium abscessus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 9.205588796 9.268260245 9.121017729 8.524581992 9.144883907 9.081242909 9.509031816 8.290234353 9.465267413 8.714401134 8.457339238 8.651250823 77966089 cap virulence capsule Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.557887287 7.583063004 7.355480954 7.171268685 7.74486127 7.787979032 7.729036243 7.656128057 32034997 ZntA Metal Resistance Zinc Actinobacillus pleuropneumoniae serovar 1 str. 4074 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus pleuropneumoniae; 8.528602319 8.466965245 8.606351918 8.151430238 8.025231237 8.044360779 7.991354787 8.46264894 7.987766593 8.155179372 8.158712294 8.429738534 260769403 proV Stress Osmotic stress Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 8.606346647 8.602623463 8.72849419 7.785663682 7.868143088 8.028407649 7.595238887 7.207464733 7.980550536 7.536131166 7.560328491 7.865365727 28853374 xylC Organic Remediation Aromatics BTEX and related aromatics Pseudomonas syringae pv. tomato str. DC3000 8.98351797 8.906699906 8.916219061 8.827901613 8.746509208 8.484366143 8.716909678 8.467876975 8.718330463 8.611323713 8.844960062 8.62694694 144943287 hydrogenase Energy process Energy process Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 8.693995575 8.592385265 8.752029331 8.2281971 8.422364243 8.44204938 8.399899724 8.401088445 8.501978775 8.43081707 8.412099345 8.666311465 110592168 mcrA Carbon cycling Methane Methane production uncultured organism 8.185112397 8.375684936 8.409175068 8.482142005 8.788205875 8.477559124 8.243669499 8.888194696 8.49182929 8.731953493 8.638539969 8.607332423 222439490 ChrA Metal Resistance Chromium Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 8.412785734 8.096954383 7.69653436 7.681760976 7.777447025 7.927307742 8.237815231 7.829141209 7.945469409 7.873532634 91697563 pimF Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 8.40417716 8.319576135 8.360012276 7.907796159 8.035669015 8.231004092 8.689568217 8.012398457 8.061969315 8.05020344 8.124128884 159180030 sigma_24 Stress Sigma factors alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 8.45480132 8.588429111 8.687823076 8.356355889 8.14774394 8.192772885 8.174946369 8.547621164 8.267663973 8.71890244 8.606873688 8.745424248 171057522 Catechol Organic Remediation Aromatics Other aromatics Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 11.13280601 10.96443912 10.6856777 11.03074334 10.97666186 11.04750538 10.95359046 10.825372 10.94957037 10.57097218 10.75056537 10.50932314 257054598 amyA Carbon cycling Carbon degradation Starch Saccharomonospora viridis DSM 43017 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora viridis; 8.452950781 8.044481121 8.55055629 8.285505375 8.440028585 7.921246972 8.554725612 8.191831672 8.229443815 8.407399131 8.068494358 52629459 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Legionella pneumophila subsp. pneumophila str. Philadelphia 1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella;species:Legionella pneumophila; 8.815373943 8.852818442 8.551862551 8.712216789 8.872881511 8.574213897 8.292616728 8.796589155 8.494846053 8.465184226 8.424285394 8.951846484 85373522 linB Organic Remediation Pesticides related compound Erythrobacter litoralis HTCC2594 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 9.914178294 9.996996313 10.03276667 9.256721735 9.194787987 9.229427454 9.228859881 9.12505209 9.055547565 9.316451011 9.313052294 9.477603056 198252325 sigma_24 Stress Sigma factors Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 8.448080961 8.493776236 8.278705097 8.066992485 7.817048762 8.082676265 8.27613851 8.161148841 8.306975694 8.033909334 8.159117075 219719247 fnr Stress Oxygen stress Stenotrophomonas sp. SKA14 8.533088493 8.889760103 8.338703574 8.504787718 8.751083248 9.006897025 9.367607914 9.067223723 8.912678239 9.002506218 9.096251908 9.335795212 91698903 pimF Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 8.580025438 8.757448653 8.394184008 9.088549493 9.13343841 9.067427197 8.849514369 9.480577216 8.70340594 9.142145416 9.194407028 8.747037249 62131464 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 8.724745497 8.612143587 8.693876729 8.211730004 7.960841743 7.44184258 7.63176146 7.459780445 7.838235761 114308298 CopA Metal Resistance Copper Nitrosomonas eutropha C71 8.444359883 8.378282537 7.541591411 7.785758775 7.855727251 8.403775302 7.853758315 8.380763891 7.829828501 7.811591579 7.614777558 2576394 dsrB Sulphur sulfite reductase Allochromatium vinosum 8.237968717 8.467654136 7.539367046 8.026827977 8.25926534 8.545594942 7.801948471 8.792244828 7.823725972 7.932388401 7.694663652 116251122 exaA Organic Remediation Chlorinated solvents Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 9.441267657 8.76676763 9.037420488 9.432381028 9.32436243 8.899961961 9.424571266 9.243608428 9.150202886 9.075421398 8.865921309 9.084936801 86608926 sigma_24 Stress Sigma factors Synechococcus sp. JA-2-3B'a(2-13) superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.83167706 8.237827118 8.424189182 8.500294303 8.346816693 8.238140873 198262293 oxyR Stress Oxygen stress gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.742959527 8.645106899 9.072068173 8.348686566 8.706104855 8.76890425 8.454363349 8.629616259 8.628680946 8.260356816 8.780044765 8.645319311 80563488 narG Nitrogen Denitrification uncultured bacterium 8.054572086 7.826854985 7.728337086 7.474111427 7.638339672 7.351462732 7.692730306 7.407064258 115375434 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 10.68145068 10.40838266 10.40471565 10.47134072 10.4253286 10.46997273 10.35951833 10.57353717 10.39047868 10.45831963 10.69507045 10.50016926 260454453 sigma_24 Stress Sigma factors Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 9.806971963 10.25397224 10.16877703 9.278449577 9.836613362 10.43756071 10.75850534 10.15022321 10.80574483 10.10117529 10.15709356 10.31335004 16081843 gdh Nitrogen Ammonification Thermoplasma acidophilum DSM 1728 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermoplasmata;order:Thermoplasmatales;family:Thermoplasmataceae;genus:Thermoplasma;species:Thermoplasma acidophilum; 9.406886133 9.216180761 8.953044192 9.050898325 8.663382775 8.549912158 9.060778738 9.046000726 9.175837233 9.036334247 9.22570897 9.103115745 56112339 tftH Organic Remediation Aromatics Chlorinated aromatics Pimelobacter simplex superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Pimelobacter; 8.695212189 9.094332074 8.730955409 8.644236782 8.523604945 8.574925116 8.74366314 8.561344651 8.540083147 8.615837645 8.796156178 8.985327792 3243167 cumA Organic Remediation Aromatics Other aromatics Sphingomonas sp. CB3 8.235010634 7.467629375 7.621707624 7.65947914 7.510523218 7.563215071 7.841188723 7.593483989 87199439 nbzB Organic Remediation Aromatics Nitoaromatics Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 8.539834232 8.360580024 8.018349104 8.36461004 8.365829664 8.209431455 8.374600478 8.688038132 8.190734404 8.478964475 8.151747179 117610381 obgE Stress Radiation stress Magnetococcus sp. MC-1 superkingdom:Bacteria;phylum:Proteobacteria;genus:Magnetococcus; 9.014210627 8.603974873 8.624610856 8.079378146 8.011581901 8.50826832 8.384577463 8.389540361 8.851549967 8.155232434 8.265410343 8.331425818 111020964 nagG Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 9.192754287 9.258440354 9.243912516 8.517652561 8.462081391 8.434192865 8.599214881 8.384392915 8.539330996 8.475989317 8.551083561 8.689769877 91680994 TerC Metal Resistance Tellurium Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.799187816 8.673915295 8.712988162 8.075239888 8.589691716 8.710737989 9.01235535 7.724118271 9.027856834 8.254005929 8.330566804 8.16880569 218678804 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium etli CIAT 894 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 9.472236323 9.560979242 9.453541983 9.087295118 9.348986605 9.427372151 9.915947801 8.916300683 9.837458995 9.222458213 9.163050539 9.478738183 161019621 lysin Bacteria phage LYSIS Bacillus phage bg2 8.112654986 7.847275851 7.233359358 7.11865013 7.171584817 6.936221859 7.465749164 6.929725385 7.35949862 7.358902936 88785658 Catechol Organic Remediation Aromatics Other aromatics Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 8.831417589 8.622960808 8.608763626 7.898016854 7.872477574 8.086174112 8.206185356 7.736952997 8.152784293 8.124832363 8.20595265 87135386 mauAB Organic Remediation Herbicides related compound Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 9.670875001 9.105514334 9.67180922 9.059891255 8.904188193 8.915093842 9.023328181 8.541116763 8.801015272 8.682447 8.694084263 9.153058183 50982474 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7.986286283 7.800247792 7.995780682 7.488027813 8.183415625 8.060679116 8.109310693 7.650435198 7.912823184 225194080 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium 8.634657078 8.790047054 8.77945012 8.17972472 8.292322588 8.295827318 8.366714247 8.357276871 8.283469802 8.384843807 8.141374795 8.460454683 77761245 pstB Stress Phosphate limitation Xanthomonas campestris pv. campestris str. 8004 9.069135633 9.155345907 9.101420044 8.12856855 8.248286483 8.562138674 8.853434536 8.38363709 9.244554992 8.304143063 8.342767038 8.446281798 133911705 ureC Nitrogen Ammonification Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 8.855272398 9.023407509 8.673377309 8.122010526 8.646858662 8.82152856 8.888745208 8.900804438 157912582 arcA Stress Oxygen limitation Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 9.060583617 9.508192317 8.958985711 9.471826355 9.446975836 9.195679809 9.513860078 9.4415796 9.126442248 9.516054136 9.173245201 8.759923223 56680519 Catechol Organic Remediation Aromatics Other aromatics Silicibacter pomeroyi DSS-3 9.360168162 9.163188961 9.38724428 8.488968632 8.586495525 8.609240142 8.650557617 8.26201817 8.489214563 8.337983984 8.31350205 8.646611789 46392666 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 8.531813233 8.339497628 238702391 iro virulence Yersinia aldovae ATCC 35236 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia aldovae; 8.350977203 8.171171383 8.230506884 7.896019387 7.857676162 8.20016605 8.106068608 8.012644367 8.351566182 8.350924145 8.386476489 8.375309261 77165617 TerC Metal Resistance Tellurium Nitrosococcus oceani ATCC 19707 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 10.22045739 10.05724219 9.9537566 9.307510436 9.305516459 9.430922181 10.06100634 9.858272973 9.972645587 10.1859381 10.15256508 10.00584263 17741751 nmoA Organic Remediation Aromatics Nitoaromatics Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.689945004 8.609571857 8.756273175 8.042367119 8.032203236 8.287664422 8.090917404 7.831142912 8.348347789 8.034776496 8.084574648 8.156612667 56380062 pimF Organic Remediation Aromatics Aromatic carboxylic acid Geobacillus kaustophilus HTA426 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus kaustophilus; 8.177656087 8.270337579 7.651748554 7.386483699 7.356863321 7.410907924 6.871800371 8.090497604 7.196701492 7.280019306 7.284244311 58331412 DNA_polymerase_type_I Bacteria phage REPLICATION Synechococcus phage S-PM2 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.401379543 7.221847627 7.415724358 6.786422166 6.806110359 7.332905645 6.827601941 7.477528193 33469597 aoxB Metal Resistance Arsenic Alcaligenes faecalis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes; 8.66661761 8.633199092 8.429246276 7.921448387 7.881664326 8.270220127 7.930255983 7.757061555 8.384926812 7.755739825 7.662104527 8.11593632 157324315 TerC Metal Resistance Tellurium Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 8.400971862 8.05952165 8.45036137 8.511134201 8.454016171 8.134987505 8.846133117 8.078072151 8.250396869 8.557083358 7.83231002 209504514 ara Carbon cycling Carbon degradation Hemicellulose Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.445830507 8.536228578 8.115720029 7.912552906 8.454246174 8.520130675 8.403083196 8.489646534 8.305753875 170768316 TehB Metal Resistance Tellurium Escherichia albertii TW07627 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 8.881147985 8.744037946 8.875181233 8.383582751 8.41080507 8.071493492 8.114860245 7.827135799 8.108206513 8.094957523 8.419421529 16041065 phenol_oxidase Carbon cycling Carbon degradation Lignin Pycnoporus coccineus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Pycnoporus; 9.22967102 8.975409087 8.555894361 9.302607976 9.330340643 8.988974578 9.236560445 9.051918795 8.992121707 9.259758517 9.428464786 8.736040593 152957889 mauAB Organic Remediation Herbicides related compound uncultured bacterium superkingdom:Bacteria; 8.469400938 8.269098672 8.42059756 7.861115117 7.879533469 7.85989966 7.972488855 7.708997165 7.711478469 7.842364894 7.875294776 227503848 narH Stress Oxygen limitation Corynebacterium striatum ATCC 6940 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium striatum; 9.505938504 9.483614355 9.366068373 8.843949483 8.662531865 8.345533929 197775383 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 9.435097172 9.428988539 9.149153493 9.010038149 8.666456156 8.910109344 9.18296945 8.848515579 9.059861196 8.993328325 9.161983761 8.92503787 111153423 fnr Stress Oxygen stress Frankia alni ACN14a 8.745187181 8.873342629 9.197740638 8.547128586 8.591031223 8.481517537 8.404580167 8.414161543 8.470726785 8.420770241 8.178355866 8.342055847 119384840 fnr Stress Oxygen stress Paracoccus denitrificans PD1222 9.338028633 9.141085275 9.284621035 8.917041599 8.999729668 8.873132393 8.893044583 9.212008044 8.985105156 9.204429623 9.012893439 9.173882382 73541853 pstA Stress Phosphate limitation Ralstonia eutropha JMP134 9.031056783 8.797323828 8.575283846 8.381403112 8.727355537 8.804981104 9.008824381 7.971658317 9.230333875 8.372533447 8.278080473 8.179473176 215404077 cydA Stress Oxygen limitation Mycobacterium tuberculosis 02_1987 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 8.464444307 8.326843995 8.297133552 8.520864058 8.694944798 8.523524236 8.629012259 8.825375818 8.761220581 8.900363123 8.530052687 8.636557035 62731916 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.446624664 8.362119736 8.454225497 7.875907038 8.071860297 8.231778433 7.786773392 8.16821699 8.018825083 7.944414433 8.016993104 7.753949627 87134243 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Novosphingobium aromaticivorans DSM 12444 9.423671449 9.646207334 9.700101776 8.803913409 8.829657483 8.97859356 9.211179268 8.669969714 8.834329911 8.739153642 8.881157452 9.011651486 157316094 ChrA Metal Resistance Chromium Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 8.23966877 8.185714864 8.24884197 8.023528681 7.855902363 7.743585014 7.655822963 8.256238739 8.305531802 7.963983405 7.970925377 8.063741929 153885263 silC Metal Resistance Silver Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.836617015 8.678163561 8.902520313 8.274778089 8.075805059 8.406149446 7.719840509 7.189664055 8.081779845 8.103219215 8.285904394 218564178 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 8.019868203 8.079222286 8.208301747 7.843729217 8.196904739 8.306318529 7.934472662 7.924149041 7.865800576 7.998287599 8.000662369 50880306 glx Carbon cycling Carbon degradation Lignin Botryotinia fuckeliana superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia; 9.218335088 9.001161089 9.021660259 8.610969001 8.826261515 8.649365154 8.746705793 9.025934198 8.543131224 9.063591188 9.14748279 9.160852938 229467461 glnA Stress Nitrogen limitation Exiguobacterium sp. AT1b 6.942723741 7.187884824 7.059932945 7.078387202 6.940676397 111225355 sigma_24 Stress Sigma factors Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 9.020368516 8.689795284 8.577911333 8.198929713 8.379202089 8.468460004 8.554785102 8.52955397 8.655763461 8.979768497 9.046711627 8.799644242 184201551 pstB Stress Phosphate limitation Kocuria rhizophila DC2201 8.653813831 8.376357978 8.54350082 8.021491168 8.000477148 8.060772403 7.93631676 7.778006222 8.189346839 7.841351702 8.084610661 7.979182557 218244030 catechol_B Organic Remediation Aromatics Other aromatics Thermus aquaticus Y51MC23 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus aquaticus; 9.121312542 9.15847842 9.489184061 8.749032326 8.798146068 8.569814442 9.141052814 9.037602249 9.36711952 9.414688121 9.216829716 9.41264539 241773327 pstB Stress Phosphate limitation Asticcacaulis excentricus CB 48 9.980901501 10.1197879 10.12233183 9.400257812 9.2406721 9.362004402 9.995648214 9.56498683 10.33941513 9.315990165 9.169159625 9.355162587 73537436 nagG Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 9.103509559 9.111517712 9.186799915 8.708606812 8.509771879 8.319750595 8.793306812 8.597978863 8.531808062 8.569157235 8.739133718 8.557986318 283575250 iro virulence Rhodopseudomonas palustris DX-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.442328196 8.463057129 8.661701369 8.968612681 8.820568632 8.627106547 8.978428967 8.926419313 8.733823032 8.947119096 8.545631703 8.452077027 171850989 gyrB other category gyrB Corynebacterium urealyticum DSM 7109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium urealyticum; 9.949592175 9.993902488 9.634219612 8.924710086 9.529741455 9.858407366 10.16478555 9.289346629 10.07358434 9.246896049 9.634175796 9.216963818 219676493 proO Organic Remediation Aromatics Other aromatics gamma proteobacterium NOR5-3 8.423894117 8.553046887 8.370914173 8.165523159 7.796279702 7.775266897 7.983444282 7.759242386 7.808401542 7.874796623 8.241979404 7.906790318 264676902 obgE Stress Radiation stress Comamonas testosteroni CNB-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 9.229489016 8.76971656 9.02773875 8.784668505 8.974519682 8.741476394 8.68430985 9.115979528 8.510710683 8.805186289 8.901136993 9.043968084 162457523 ChrA Metal Resistance Chromium Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 8.31706562 8.536006124 8.434242088 8.553314624 8.47623354 8.806410298 8.53670397 8.596067444 8.809468048 8.785531112 8.675063601 8.362310438 32445804 ahpC Stress Oxygen stress Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 8.423334881 8.459806586 8.52009567 7.964207152 8.729001342 8.955668847 7.850359775 8.417603184 8.058320664 9.107951586 94266081 obgE Stress Radiation stress delta proteobacterium MLMS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 9.453823678 9.62517338 9.503586208 9.146552593 9.168360388 9.150792109 9.067683996 9.270984706 9.072516712 9.276381135 9.240747487 9.349640821 218229792 ara Carbon cycling Carbon degradation Hemicellulose Roseburia intestinalis L1-82 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia intestinalis; 8.898388852 8.770576995 9.022494252 8.593958553 8.013300301 8.392776053 8.339651844 8.45212684 217330187 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.048104929 8.085481877 7.834348983 7.46196677 7.88773808 7.7729052 8.048512934 7.779082596 8.106787676 189024487 ureC Nitrogen Ammonification Brucella abortus S19 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Brucella;species:Brucella abortus; 8.715826545 8.644952328 8.820811585 7.93999229 7.757800803 7.90024363 7.58914449 7.324463595 8.024379421 7.8473526 7.691796043 7.927155211 147851801 Al Metal Resistance Aluminum Synechococcus sp. RCC307 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.450008066 8.374571218 8.543139154 8.222808853 8.371432872 8.147320297 8.24354602 8.716840074 8.454509777 8.660481286 8.187064784 8.357795069 166197612 nagG Organic Remediation Aromatics Aromatic carboxylic acid Nocardioides sp. DF412 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 9.026460244 8.894015066 8.820062332 8.841654937 9.05355928 8.770838297 8.553277564 9.296822996 8.817282032 9.151240513 8.943353353 8.854317332 133948826 Catechol Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 8.544377945 8.770409162 8.886523802 8.472186466 8.145961206 7.963491344 8.26785406 8.418778321 8.567989611 8.043906629 8.256637238 8.434327891 223585864 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.486375015 8.277643303 8.266846965 7.797659558 7.45335761 7.666046249 7.773517807 7.523456637 7.961735022 7.76746816 7.672863006 7.628397201 226314284 fnr Stress Oxygen stress Brevibacillus brevis NBRC 100599 7.693078431 7.767074708 6.983936963 7.337541217 7.299782709 7.512739972 116610587 pheA Organic Remediation Aromatics Other aromatics Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8.240387576 8.514715324 8.348995042 7.84613748 7.862352214 8.232376346 8.054704722 7.632170509 7.648947202 7.804500502 8.007604563 254506647 endochitinase Carbon cycling Carbon degradation Chitin Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 8.683881617 8.557301026 8.856812901 8.383071904 8.35049297 8.204217468 8.439788947 8.229937802 8.449796362 8.27735391 8.280546292 8.232304763 38427030 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.517290196 8.551774926 8.331895798 8.036830383 8.017020284 8.002994998 7.920532177 7.858259331 8.563392163 8.298842052 8.132992382 8.257102751 254979306 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 8.421920276 8.668023234 8.496407544 8.144444182 8.449214884 8.615969538 8.892641409 8.756790296 8.756612131 9.083574747 8.95048894 8.729515914 169237005 pstB Stress Phosphate limitation Halobacterium salinarum R1 9.373757577 9.466809346 9.055183456 8.496950904 8.061282532 8.592256061 8.78392802 8.396450978 8.66065544 8.426586624 8.450685447 8.670153289 77386754 CopA Metal Resistance Copper Rhodobacter sphaeroides 2.4.1 9.296842231 9.075953683 9.172269254 8.61559754 8.357454894 8.515976994 8.358359343 8.427644939 8.41082021 8.304367911 8.538667023 196480469 dnaK Stress Heat shock Phenylobacterium zucineum HLK1 9.083247901 8.642851082 8.683047263 8.218635144 8.050755158 8.108615625 8.441059546 8.361739188 8.528797532 8.322201916 8.461368722 8.243340775 76666785 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium 8.700583206 8.676615051 8.543131143 8.427374829 8.960983069 7.056127621 8.717089523 8.718699888 8.920758162 68510348 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.994828717 9.917565251 9.991827727 9.88613887 9.95011485 9.794270842 10.01496571 9.935320205 9.767043586 9.782035189 10.02888706 9.801607698 182382484 narG Nitrogen Denitrification uncultured bacterium 8.758012592 8.724490562 8.680780387 8.251293257 8.127968049 8.166032101 8.456993792 8.098778111 8.489308525 8.326735304 8.271522968 8.577474932 154247876 pstB Stress Phosphate limitation Xanthobacter autotrophicus Py2 9.352154862 9.439319045 8.845517196 9.02957643 9.451746407 556331 mauAB Organic Remediation Herbicides related compound superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylophilus; 9.075579922 9.085395652 9.0571805 8.470856652 8.032651679 8.434633414 8.492731186 8.311742934 8.279993017 8.350086854 8.609140091 264674104 ara Carbon cycling Carbon degradation Hemicellulose Caulobacter segnis ATCC 21756 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 8.755405883 8.345492166 8.86268713 8.074223916 8.105573225 8.055249185 7.758496305 7.724275171 8.205611314 7.713838443 7.579158923 8.161402804 193087748 CopA Metal Resistance Copper Chloroherpeton thalassium ATCC 35110 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chloroherpeton;species:Chloroherpeton thalassium; 8.309203152 8.350732991 8.519297476 7.29120854 7.65301907 7.461495921 7.094191224 7.223398942 7.462408364 7.661078337 7.042293961 170144172 ArsC Metal Resistance Arsenic Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 9.008019396 8.831992391 9.310693501 9.520094968 9.413317462 8.858636108 9.297166088 9.744588035 9.128974419 9.395275275 9.189837216 9.381224429 170748865 fnr Stress Oxygen stress Methylobacterium radiotolerans JCM 2831 9.077854055 9.434986575 9.326957681 8.812407412 8.715220791 9.310827782 9.79408939 9.210697503 9.584827058 9.070800625 8.933595979 9.252475626 260778617 type_III_secretion virulence secretion Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 8.473434435 8.751554477 9.10228895 8.084746366 7.99745997 8.059527937 8.183662122 7.802711989 8.436752456 8.026119261 8.060329174 7.989595374 211957605 ppk Phosphorus Phosphorus utilization Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 8.497991995 8.20446582 8.822113835 7.940638076 7.876293784 7.877371109 7.360454782 7.415752639 7.935055197 7.815307334 7.767091142 7.843322749 239927944 ureC Nitrogen Ammonification Streptomyces ghanaensis ATCC 14672 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 8.867108002 9.092262279 8.864210103 8.232413864 8.1405651 8.284965113 8.796090267 8.238876358 9.036000051 8.244949373 8.093513862 8.402538063 241880616 pstB Stress Phosphate limitation Desulfovibrio vulgaris RCH1 9.137233874 9.034959972 9.208703418 8.625506538 8.404368943 8.707012216 8.643914301 8.812156512 8.700882816 8.628128806 8.806383698 8.843131514 87281062 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.672569962 8.603881926 8.528956288 8.682992435 8.536242294 8.473592206 8.052102771 8.08026958 8.460569133 8.006728272 8.222175012 8.327916245 88700804 sigma_70 Stress Sigma factors Congregibacter litoralis KT71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 8.280997387 8.306203289 8.218529673 7.847344713 7.782241939 7.659636487 7.548284936 7.583972282 8.030080639 7.849580331 7.741583575 7.826504538 157285341 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.203965156 9.381384543 9.18393264 8.41110761 8.729046217 9.042561106 9.125034862 8.458413878 9.196660133 8.503275544 9.085510393 8.819049688 21222139 TerD Metal Resistance Tellurium Streptomyces coelicolor A3(2) 11.25107253 11.09884203 11.04668183 10.51884049 10.67945199 10.59310027 10.8133828 10.54955904 10.78685506 10.76770522 10.88466281 10.70878975 48431134 gyrB other category gyrB Picrophilus torridus DSM 9790 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermoplasmata;order:Thermoplasmatales;family:Picrophilaceae;genus:Picrophilus;species:Picrophilus torridus; 8.469235277 8.67581396 8.807596253 7.860634571 8.28272429 8.478537188 8.9850348 8.154206804 8.18360472 8.471650316 8.720235162 151579397 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.504562159 8.793661307 8.507788945 7.959814584 8.256098823 8.38230479 8.793642492 7.869556648 9.252373163 8.053230772 8.258771828 8.169562619 91790145 ZntA Metal Resistance Zinc Polaromonas sp. JS666 8.340090802 8.526388605 8.48664451 8.09455247 7.850101423 8.006972362 8.266695754 7.933696446 8.345602334 8.084034951 8.15559435 8.230923601 219864290 ureC Nitrogen Ammonification Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 9.41439539 9.352628413 9.491615478 8.674637885 8.54925662 8.950240006 8.400090601 8.375117683 8.461019533 8.743166912 8.727303862 8.86194292 221315056 obgE Stress Radiation stress Bacillus subtilis subsp. subtilis str. NCIB 3610 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 8.087553893 8.213630148 7.74660368 7.557402856 7.836440662 7.734537304 8.032883057 8.295766255 7.914034076 7.889290295 47572357 phn Organic Remediation Herbicides related compound Rubrivivax gelatinosus PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 8.352985937 8.151906026 8.256633301 8.47641916 8.613035255 8.45985074 8.081596313 8.683534792 8.278110204 8.460814681 8.196778253 8.224431859 110680856 xylA Carbon cycling Carbon degradation Hemicellulose Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 7.889923512 8.057917904 7.233889507 7.05716974 8894835 CopA Metal Resistance Copper Streptomyces coelicolor A3(2) 8.337882816 8.068610023 8.22999031 7.729995209 7.880913061 7.705307265 7.396089001 7.826546855 7.8175332 7.76084077 7.61533253 52699674 rubisco Carbon cycling Carbon fixation Azospirillum lipoferum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum; 8.21334576 8.124979766 7.695921111 8.03655458 7.895306847 8.134842488 7.941070894 7.705172946 7.912180181 6458726 fnr Stress Oxygen stress Deinococcus radiodurans R1 7.706946591 7.608039372 7.288997192 7.812777446 7.874651636 7.595471856 7.692807761 198269262 CopA Metal Resistance Copper Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 8.678560978 8.43358723 8.63076377 7.965091123 8.081523108 8.103340282 8.351177961 7.56374062 8.184940752 7.915672609 7.797993944 8.117684919 126015104 cellobiase Carbon cycling Carbon degradation Cellulose Staphylothermus marinus F1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Staphylothermus;species:Staphylothermus marinus; 9.039686041 9.146605864 9.440805672 8.462559404 8.505279861 8.290746208 8.058126362 8.105997566 8.44584763 8.362523157 8.425929919 8.645077684 86605319 ureC Nitrogen Ammonification Synechococcus sp. JA-3-3Ab superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.805391938 8.647867692 8.790463658 8.186988181 7.707005808 7.755809378 7.455856972 7.492905338 8.059117242 7.804652435 7.637657948 7.861135293 192811585 atzC Organic Remediation Herbicides related compound Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 9.247908195 9.30820949 9.315646999 8.763963468 8.379041059 8.35019513 8.35741046 8.123781959 8.427392433 8.345935943 8.748085748 87200449 PobA Organic Remediation Aromatics Aromatic carboxylic acid Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 9.979993148 9.603156182 9.473503634 9.828312533 9.200878457 8.730273579 9.670877979 9.720633479 9.373321849 9.480683352 9.295500137 9.245873337 148834157 CopA Metal Resistance Copper Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 8.200066286 8.552003365 8.658347356 7.928057302 7.710964421 7.81342245 8.199160067 8.038179959 7.868806001 8.055436276 8.48559929 90903261 aoxB Metal Resistance Arsenic uncultured bacterium superkingdom:Bacteria; 9.737326764 9.490865099 9.694629946 9.369696426 9.279476949 9.162153131 9.123684602 9.089480759 8.938346761 9.033053553 9.22918827 9.494322922 120595860 atzC Organic Remediation Herbicides related compound Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 10.20793474 10.35805217 10.12170032 9.293245401 9.780409329 10.17232363 10.36637172 10.28253263 10.41193231 10.17178912 10.09037329 10.21379825 3337272 tape_measure_protein Bacteria phage STRUCTURAL Enterobacteria phage 186 order:Caudovirales;family:Myoviridae;genus:P2-like viruses;species:Enterobacteria phage P2; 9.087202826 8.942426485 8.676308533 8.414373906 8.40748357 8.556609258 9.029860607 8.371708908 120554772 fnr Stress Oxygen stress Marinobacter aquaeolei VT8 8.367011422 8.439975984 8.766103865 8.356632223 7.93792012 7.922241985 7.60135503 7.422506725 8.162828518 7.813124727 7.556910217 8.021269059 18034255 APS_AprA Sulphur adenylylsulfate reductase Desulfotomaculum thermobenzoicum superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 9.10675063 9.114894408 9.237670978 8.831212901 8.58132598 9.253149352 8.896042816 9.200643053 9.133103985 8.891344508 9.513520906 9.004032357 123967432 cbdA Organic Remediation Aromatics Chlorinated aromatics Sphingobium yanoikuyae 7.929780017 7.681609974 7.902872694 7.480531165 7.772176895 7.897770267 7.71398476 7.959326614 7.392262614 133776512 pstB Stress Phosphate limitation Collinsella aerofaciens ATCC 25986 9.125588523 9.043486668 9.202499429 8.371213949 8.381628745 8.460705427 8.552955212 8.029117734 8.625064516 8.382376376 8.423772451 8.693878665 114538900 hrcA Stress Heat shock Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 10.00690709 9.79499767 9.902599683 9.532640986 9.652992456 9.453320535 9.992189038 9.631065996 10.16651023 9.692073502 9.940402359 9.910570582 171913717 atzB Organic Remediation Herbicides related compound Verrucomicrobium spinosum DSM 4136 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Verrucomicrobium;species:Verrucomicrobium spinosum; 8.059350916 8.355565402 8.183222744 7.469412284 7.585748267 7.919285829 7.801138885 7.585661267 8.391961281 7.864343718 7.878101701 7.609237855 121583358 ophC Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 9.092346753 8.427756069 8.566221453 9.085464427 9.061726773 8.982180021 9.156050048 9.19473803 9.195339463 9.074242609 9.074095199 8.675637921 170078758 dnaK Stress Heat shock Synechococcus sp. PCC 7002 9.028952853 9.123026726 9.228761579 8.620236816 9.226844875 9.390685139 9.139107722 9.30201129 9.073308419 9.163248829 9.109774674 253574453 amyA Carbon cycling Carbon degradation Starch Paenibacillus sp. oral taxon 786 str. D14 8.691809886 8.744700141 8.793953771 7.86862911 7.76157668 7.778784397 7.615031197 7.380657142 8.057247027 7.806671789 7.674571674 8.104981096 257441978 katE Stress Oxygen stress Campylobacter gracilis RM3268 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter gracilis; 8.675654195 8.267105077 8.608070841 7.970274089 8.127080697 7.54064629 7.976355625 7.936371747 169596376 ChrA Metal Resistance Chromium Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 8.598356091 8.449174115 8.132949531 9.147167513 8.966810808 8.493364208 9.04711168 8.98892207 8.434234431 8.922309866 8.796430188 256393948 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 8.788325897 8.804147475 8.714045664 8.495150706 8.707630696 8.750619473 8.730649474 8.715297926 8.716888625 8.850391646 8.898885003 8.597731271 115379787 pimF Organic Remediation Aromatics Aromatic carboxylic acid Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 10.12674023 9.897999822 10.28777077 9.955004251 9.637117006 9.565859429 9.463439825 9.300396556 9.706984415 9.605943085 9.695161234 9.651504649 196226334 nrfA Nitrogen Dissimilatory N reduction Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 8.586934257 8.302931348 8.300325539 8.841568282 8.834498794 8.62682819 6.887271363 8.820626681 8.516495245 8.707924106 8.659412363 8.656735579 221134924 pstB Stress Phosphate limitation Glaciecola sp. HTCC2999 8.586187808 8.632514807 7.926731864 8.00972353 7.92214554 8.095717185 7.805883435 7.898626564 7.876833017 7.840765721 7.97406497 254461873 Tet Antibiotic resistance other Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.150252291 8.344826074 8.447181086 7.834588658 7.869170873 7.665907275 7.473562731 7.506678859 7.991037085 7.515933154 7.465758968 7.762118859 161161178 mer Metal Resistance Mercury Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 8.171851553 8.206154841 8.150041275 7.709900965 7.361072099 7.393516092 7.517317489 7.831040356 7.876694249 8.152018998 7.936497361 7.81108883 148255520 NiR Nitrogen Assimilatory N reduction Bradyrhizobium sp. BTAi1 10.22293002 10.23873258 10.11639381 9.659367895 9.022429609 9.613205175 10.03601425 10.18737358 9.854325728 212637258 cytochrome Energy process Energy process Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 9.182163737 8.834292941 9.159561663 8.891606723 8.855311378 8.678198221 8.771436759 8.833896279 8.549132143 8.939234782 9.118785874 8.643813896 254171808 cda Carbon cycling Carbon degradation Starch Thermococcus sp. AM4 8.600515908 8.605992395 8.912631405 7.764020139 7.838861983 7.778638891 7.64053486 7.740348411 7.968326482 7.750811267 7.695105187 7.871671259 164708996 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.768796189 7.653635785 7.968959332 7.271556825 7.363071514 7.516173072 7.799021232 7.971136828 161830041 CopA Metal Resistance Copper Coxiella burnetii RSA 331 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Coxiellaceae;genus:Coxiella;species:Coxiella burnetii; 8.96491632 8.783555942 8.598861185 8.605405564 8.641414474 8.702523976 8.601590613 8.690616002 8.743245221 8.581359538 8.762846545 8.509689235 218244078 pcc Carbon cycling Carbon fixation Thermus aquaticus Y51MC23 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus aquaticus; 8.799667103 9.128777763 8.823554077 8.417538429 8.563892276 8.680485313 8.730385364 8.777716237 8.618700266 8.613969418 8.629918187 8.837344531 91796201 fnr Stress Oxygen stress Chromohalobacter salexigens DSM 3043 9.667614179 9.690265701 9.694096121 8.861681676 8.986781086 8.912157046 9.236683592 8.967529516 9.464275045 9.036728339 9.331656721 9.108654877 89512584 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.06387093 7.846476745 7.982191659 7.333144191 7.457712953 7.313201565 7.135984841 7.09347766 7.622436226 7.199692068 7.288089886 7.409206054 26989980 SmtA Metal Resistance Miscellaneous Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 10.18316581 9.982298977 9.930133141 9.331961701 9.190924224 9.641792703 9.760770906 9.507453177 9.695940107 9.446728086 9.78980502 9.744957582 197210237 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.914281768 8.464340182 8.177758752 8.811485473 8.8338996 8.727500365 8.448948192 9.001340684 8.426844482 8.941129817 9.146897312 8.733735188 46203198 pheA Organic Remediation Aromatics Other aromatics Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 8.422432556 8.148707567 8.358476185 7.920015947 7.890843415 7.917735695 8.096283207 7.703846127 8.568252245 7.629477225 7.706059744 7.772008606 145246630 groEL Stress Heat shock Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8.357766328 8.0197334 8.479029416 8.322184496 7.909997979 8.153263261 8.138049747 8.202700242 8.039870589 7.584013938 7.823446349 146190530 alkK Organic Remediation Others Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.223289083 8.62681323 8.586638042 8.231944662 8.244593116 8.132026146 7.733070578 8.03954186 8.120649861 7.851997737 7.994162551 8.229702222 118657688 amyA Carbon cycling Carbon degradation Starch Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 8.242738253 8.15670399 8.369208273 8.168803578 7.968347158 7.623859611 7.855814052 7.78571332 8.132092466 7.891752518 7.541325627 7.763873659 254398388 Tet Antibiotic resistance other Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 9.071941424 9.042947634 9.17673683 8.637758595 8.700479028 8.667789079 8.487985426 8.633428927 8.542288158 8.814882681 8.906835317 8.802027767 270737215 Tet Antibiotic resistance other Desulfovibrio aespoeensis Aspo-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio aespoeensis; 9.401093007 9.399154476 9.579758652 8.771129492 8.614279741 8.717725122 8.494693035 8.238776188 8.696707438 8.571249856 8.508003081 8.873917339 146401998 universal_stress_Family_protein_III Bioleaching other category Acidiphilium cryptum JF-5 8.339741971 8.443036882 7.523308562 7.790355012 8.341071733 8.660920139 7.95721516 8.506375125 7.916148648 7.863828992 7.889297027 16081486 antioxidant Bioleaching Metal Resistance Thermoplasma acidophilum DSM 1728 8.809762113 8.533130898 9.048795024 8.301004978 8.156250603 8.136749615 8.001315724 7.609180233 7.705631776 8.018862867 8.394250025 44829093 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.940180738 8.683887679 8.965013376 8.784939698 8.792553068 8.47123426 8.839387106 8.735428762 8.851326617 8.887891476 8.960777919 8.574158047 154252213 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Parvibaculum lavamentivorans DS-1 9.185297636 9.143435879 9.154959845 8.729404981 8.64991916 8.662422214 8.626160847 8.548556759 8.544107037 8.678421284 8.624522936 8.824630239 126742250 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 9.014806037 8.918411922 8.997276211 9.002741919 8.916016215 8.727386595 9.045142838 9.237571727 8.743880621 8.863808652 8.753831425 8.604020817 7380180 CopA Metal Resistance Copper Neisseria meningitidis Z2491 9.10064571 9.061043052 8.880535956 8.269901122 8.095113538 8.651350349 9.022595163 7.760685229 9.087314496 8.492122882 8.653022019 8.998835698 145217397 chnB Organic Remediation Other Hydrocarbons Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 9.65001243 9.553341671 9.565893957 9.105151642 8.959491582 8.952581262 8.685571331 8.900094475 8.878217737 8.978106162 8.969856085 9.207579659 227328857 ABC_antibiotic_transporter Antibiotic resistance transporter Pectobacterium carotovorum subsp. carotovorum WPP14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 9.496841013 9.729956158 9.634432855 9.348656975 9.221066719 9.088457423 8.902872533 9.309065945 9.134958857 9.25305029 9.501962821 218780954 pilin virulence pilin Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 8.408517122 8.381134204 8.41219974 7.921822884 7.922881463 7.753682765 8.27790704 8.080632113 8.075688057 8.254758494 8.228946088 206588682 Catechol Organic Remediation Aromatics Other aromatics Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 8.718851403 8.820938327 8.639751229 8.643730201 8.667458954 8.462916245 8.481078983 8.700758623 8.615428212 8.908086493 8.769509994 8.888486691 66048061 CopA Metal Resistance Copper Pseudomonas syringae pv. syringae B728a 8.070952288 7.857874249 7.015541588 7.116738159 7.076230518 6.609040885 7.665502578 209883889 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 8.727148478 8.316706959 8.616195745 8.528728476 8.822601511 8.177474229 8.638918279 8.509898663 8.834649095 8.553879738 8.78307366 8.535377474 239983392 narI Stress Oxygen limitation Streptomyces albus J1074 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces albus; 9.434901662 9.180455732 8.862126381 9.692005534 9.617913579 9.506254048 9.785021452 9.59864654 9.35846832 9.177600368 9.294536097 8.940423415 193226520 pcc Carbon cycling Carbon fixation Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 9.270784734 9.395562221 9.54760408 9.268540931 9.194232087 8.988502914 9.340549028 9.473883776 9.217505218 9.639901187 9.499770924 9.544280553 146188557 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.497201486 7.222980864 7.31996715 7.136763725 7.76275274 74038398 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.674148513 7.561357368 212639275 gyrB other category gyrB Anoxybacillus flavithermus WK1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Anoxybacillus;species:Anoxybacillus flavithermus; 8.317210288 7.985979938 7.321726652 7.188022432 13816554 Fe_S_cluster_binding_protein Bioleaching Electron transport Sulfolobus solfataricus P2 9.231141365 8.927700813 9.025587691 8.369854735 8.170564643 8.175526867 7.566942358 7.432371697 8.148772818 7.982888673 8.46485976 82795270 type_III_secretion virulence secretion Pseudomonas syringae pv. tagetis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 7; 8.140840896 8.173661408 8.235837474 8.326063856 7.991395207 8.12786047 8.275660961 8.366148499 8.115682372 7.977518695 8.065682544 148262294 dnaK Stress Heat shock Geobacter uraniireducens Rf4 9.479522562 9.390939467 9.340552812 9.096927316 8.970646821 8.861641474 8.818269096 8.903750655 8.682459375 8.827458356 8.74103905 9.072890493 119485652 TerD Metal Resistance Tellurium Lyngbya sp. PCC 8106 8.355105093 8.208641576 8.684492869 7.6150658 7.785668001 7.632957749 7.9428608 7.474257294 7.721708174 7.608498003 7.3119923 7.749600261 163260844 nahA Organic Remediation Aromatics Polycyclic aromatics Bordetella petrii 8.762183448 8.686880035 8.756357606 8.516019536 8.22777182 8.485459801 8.09954927 8.38429155 8.006425865 8.475204363 8.676260085 8.509038496 158108920 CopA Metal Resistance Copper Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.593876125 8.683235468 8.43382075 8.590146546 8.500646989 8.318275371 8.585614343 8.594401835 8.540276172 8.850734812 8.695690184 8.568011599 163856604 oxyR Stress Oxygen stress Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 9.156515856 9.174289671 9.276299642 8.098419948 8.286434967 8.483661708 8.519733962 8.267447511 8.594287917 8.250888362 8.271023547 8.567580725 154251049 AceB Carbon cycling Carbon degradation others Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 8.473063161 8.306023897 8.180962235 7.995924167 8.007782978 7.890844266 8.317526653 7.924417704 7.862030282 7.966197691 8.184954375 7.890564645 23465870 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Bifidobacterium longum NCC2705 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 8.517487553 8.57605188 8.588472389 8.889344197 9.164137823 8.620658717 9.173497879 8.669083205 8.520099849 8.800259777 259166175 cydB Stress Oxygen limitation Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 8.061784488 7.985336438 7.81377472 7.70688807 8.283348898 8.34676946 8.240597558 8.0555528 8.127342241 169820470 type_III_secretion virulence secretion Burkholderia cenocepacia MC0-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 8.787542932 8.803690956 8.653089961 8.77986192 8.804446108 8.711984518 9.026888675 8.831370264 8.86007322 8.762693234 9.145383434 9.089014845 237747497 ahpC Stress Oxygen stress Oxalobacter formigenes HOxBLS superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Oxalobacter;species:Oxalobacter formigenes; 8.077836748 8.222717458 8.215784655 7.760876445 7.461063363 7.402053121 7.41009676 7.448002511 7.900321161 7.536542078 7.392921329 7.499531221 45198795 ppx Phosphorus Phosphorus utilization Eremothecium gossypii superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Eremothecium; 8.616892834 8.374064593 8.742177173 7.846348157 7.847469236 7.760780931 7.513764646 7.789663731 7.883747462 126729544 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 9.175200004 9.310868003 9.142439563 8.856088887 8.765499801 8.839876965 8.92953578 9.161347933 8.951350281 9.244913778 9.059183735 8.922511502 225855080 pap virulence adhesin Streptococcus pneumoniae JJA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus pneumoniae; 8.652635432 8.490209434 7.78430514 7.890963336 7.790173572 7.4404225 7.29628603 7.874773968 7.502649155 7.781715585 149361059 mer Metal Resistance Mercury Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 9.603868065 9.535463794 9.681195365 9.465694404 9.44697858 9.296677535 9.273036765 9.708059194 9.578124871 9.649832445 9.855367461 9.834682478 120556788 nifH Nitrogen Nitrogen fixation Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 8.238915854 8.221539273 8.162076184 7.663868489 8.26997557 8.42738723 8.331062828 7.642955717 22776318 pcpB Organic Remediation Herbicides related compound Oceanobacillus iheyensis HTE831 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Oceanobacillus;species:Oceanobacillus iheyensis; 8.040236984 7.760202785 7.98967113 6.96314735 7.121766743 7.185324452 6.572091999 7.098544771 6.879456917 6.945473443 71369719 atzD Organic Remediation Herbicides related compound Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.123165828 8.209193366 8.106359635 8.23301842 8.221918219 8.036677681 7.952767992 8.649176679 8.140810304 8.268426315 8.264140045 8.239597176 219675676 oxyR Stress Oxygen stress gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.793885364 8.79441947 9.195164282 8.591337932 8.403825358 8.278599363 8.117543894 8.104760162 8.395071911 8.289927128 7.91927564 8.515255875 171989154 fnr Stress Oxygen stress Exiguobacterium sibiricum 255-15 8.620395527 8.769727068 8.940108866 8.376937916 8.163634552 8.50107549 8.228892222 7.874352552 8.284598117 8.30139845 8.416454235 99030605 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 8.143425813 8.303366577 8.165744368 7.93159197 7.787456136 7.929618907 8.352663089 7.661372712 8.10419265 7.796729998 7.741834867 7.881568299 27378624 sox Sulphur Sulphur oxidation Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.620502346 8.862982594 8.616091133 8.529547782 8.701830599 8.763951686 8.75690764 8.761568645 9.030662235 8.708221394 8.556867369 8.469726249 71916270 sigma_70 Stress Sigma factors Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 9.268954683 9.195079029 9.652922126 8.861445592 8.870339872 8.674960989 9.093427891 9.502034096 8.910458904 9.222698313 9.050212265 9.205672225 283782006 sigma_24 Stress Sigma factors Pirellula staleyi DSM 6068 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Pirellula;species:Pirellula staleyi; 10.23715957 10.41693849 9.968057207 10.93077296 10.28491214 10.55979789 10.49344835 238795242 cda Carbon cycling Carbon degradation Starch Yersinia intermedia ATCC 29909 9.24758875 9.193997895 8.678441654 8.238360641 8.053703705 8.14616745 8.000130547 8.154109383 8.21279045 208609026 gyrB other category gyrB Paenibacillus apiarius superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 9.218487815 9.128244295 8.422685159 10.43403201 9.926895486 9.412841568 9.478229116 9.497677831 9.54108477 86138641 nagG Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.290669538 8.135998418 8.270355953 7.876021389 7.795862682 7.951350481 7.863423007 8.107621878 7.730345606 7.474395132 7.777780487 262336742 pilin virulence pilin Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.479839595 8.430254647 7.929250818 8.231591979 8.014244204 7.700806093 8.197203024 8.225699833 8.249167078 8.224250151 7.938052166 113528990 pheA Organic Remediation Aromatics Other aromatics Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.484108809 8.155201023 8.380914118 8.371450657 8.337329284 8.108724281 8.496187228 8.583432718 8.50292272 8.738293863 8.499227171 39995698 cytochrome Energy process Energy process Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 8.592537005 8.269202597 8.842354766 9.019009687 8.969715926 8.682841717 9.351233932 8.689307426 9.04242393 8.734460101 9.035121418 187478070 ChrA Metal Resistance Chromium Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 9.092690952 9.007764687 8.851172741 8.426617938 8.823212999 9.012047432 78185902 gyrB other category gyrB Pelodictyon luteolum DSM 273 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon luteolum; 8.191901604 8.086022796 8.42065207 7.850843189 8.032401103 7.900182753 7.744697601 7.807338242 7.865066019 7.587890243 7.855203652 7.805423783 88918500 mer Metal Resistance Mercury Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 8.069940208 8.384241423 8.446446494 8.141725754 8.117181564 8.0803676 7.941612271 8.433876334 8.249780394 8.239566396 8.215002864 8.049440889 228473206 ahpC Stress Oxygen stress Capnocytophaga gingivalis ATCC 33624 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga gingivalis; 8.694392439 8.665142822 8.834179048 8.256728053 8.223474552 8.04890022 7.822982093 7.624426437 8.163225162 7.904295544 7.891682859 8.056156112 171911859 sigma_24 Stress Sigma factors Verrucomicrobium spinosum DSM 4136 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Verrucomicrobium;species:Verrucomicrobium spinosum; 8.225352571 8.04474124 8.386382426 7.538382335 7.437743126 8.020655102 8.167228439 7.60659639 8.239238627 7.573710035 7.841499297 7.48958147 209536735 cellobiase Carbon cycling Carbon degradation Cellulose Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.175311529 7.956033821 7.869480765 7.736814151 8.006115477 7.71204935 8.223506755 7.62367721 7.712263122 153870795 napA Nitrogen Dissimilatory N reduction Beggiatoa sp. PS superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Beggiatoa; 8.676435556 8.724015438 8.871159319 8.01413894 8.82554857 8.899114277 9.060383276 8.387151442 9.052590416 8.574954306 8.597946246 8.717050358 78165836 narI Stress Oxygen limitation Chlorobium luteolum DSM 273 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon luteolum; 8.240252153 8.494255014 8.272426106 7.887559475 7.994505639 8.275191113 8.58628373 8.057673576 8.318409879 8.183335259 8.024633373 8.175905495 78224692 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 8.932032349 8.945913656 9.177738761 8.473461211 8.688260695 8.493627423 8.144869794 8.294954985 8.198059508 8.367825979 8.564058702 120560296 pimF Organic Remediation Aromatics Aromatic carboxylic acid Shewanella sp. W3-18-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 8.007891644 8.108052663 8.205179543 8.438216084 8.427543056 8.017658499 8.527400766 8.295170592 8.198994184 8.236176238 8.153309134 8.126812542 169826489 pcc Carbon cycling Carbon fixation Lysinibacillus sphaericus C3-41 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Lysinibacillus;species:Lysinibacillus sphaericus; 8.303421932 8.276079512 8.489027397 8.069645704 8.072515775 8.111005301 7.766253426 8.134403066 8.208533712 7.882382564 7.948456702 7.931521989 192823857 DNA_polymerase_type_I Bacteria phage REPLICATION Mycobacterium phage DD5 order:Caudovirales;family:Siphoviridae; 8.314467743 8.272556345 8.351597723 7.819283341 7.397166966 7.759105315 7.960263735 7.46703356 7.544044553 7.406202796 7.637226107 114539953 MFS_antibiotic Antibiotic resistance transporter Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 8.849713653 8.839788848 9.028377223 8.61913372 8.855207776 8.71304932 8.489488773 9.246176573 8.759787419 8.839174664 8.915894591 8.801094023 88704608 sigma_70 Stress Sigma factors Congregibacter litoralis KT71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 9.272848803 9.360808359 9.188424429 8.880718878 8.773075359 8.634332574 8.682085405 8.762009607 8.600634469 9.069800133 9.083233712 9.174638554 157679103 rubisco Carbon cycling Carbon fixation Acidithiobacillus thiooxidans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus; 8.499536125 8.761711667 8.510890237 7.692173685 8.018068087 8.466379111 8.56028938 8.368872945 8.561934493 8.107147821 8.360939768 8.258929703 68347895 cytochrome Energy process Energy process Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 9.097729453 9.047176223 9.263850501 8.481254799 8.39976149 8.508455622 8.497537436 8.217527587 8.193109595 8.243042538 8.719454033 256376208 glnA Stress Nitrogen limitation Actinosynnema mirum DSM 43827 9.092462228 8.864210662 9.030063035 9.090278458 9.043734319 8.960117784 9.529157676 9.698133971 9.235635251 9.518162571 9.404620829 9.59272409 260574488 ahpC Stress Oxygen stress Rhodobacter sp. SW2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 8.163216021 8.600847707 8.285875489 163800505 iuc virulence aerobactin Vibrio sp. AND4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.211214522 7.964547341 7.241211078 6.866635841 7.331318035 259025134 desR Stress Cold shock Ferroglobus placidus DSM 10642 superkingdom:Archaea;phylum:Euryarchaeota;class:Archaeoglobi;order:Archaeoglobales;family:Archaeoglobaceae;genus:Ferroglobus;species:Ferroglobus placidus; 8.684195708 8.777766902 7.713128037 7.700287902 7.729098451 7.302002827 7.660755102 7.520749871 7.997751288 42524666 vanA Carbon cycling Carbon degradation Others Bdellovibrio bacteriovorus HD100 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 7.948229222 8.11805269 7.191138947 7.56621517 7.308032891 7.155266047 6.967773342 7.386452296 119955331 nhh Organic Remediation Aromatics Nitoaromatics Mycobacterium vanbaalenii PYR-1 9.094188534 9.225560971 9.505691305 9.131028761 9.137512517 8.693666166 9.067417322 9.607837307 9.193418133 9.411815934 9.060696816 9.496494373 196156596 mer Metal Resistance Mercury Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 8.895150519 8.427467848 8.433587598 8.228627466 8.116753082 7.915901206 8.250189491 8.187756705 8.28420188 7.956388759 7.883739975 8.156140165 85710598 BchY other category chlorophyllide reductase Erythrobacter sp. NAP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 8.73610069 8.281905488 8.480114086 8.212358568 7.968362348 7.990006295 8.013567302 8.056033653 8.037307555 8.083263595 8.041970202 46401100 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Candidatus Protochlamydia amoebophila UWE25 superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Parachlamydiaceae;genus:Candidatus Protochlamydia;species:Candidatus Protochlamydia amoebophila; 9.019011869 9.070783811 8.444129821 8.079724271 8.072883451 7.977610217 116265087 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Polynucleobacter sp. QLW-P1DMWA-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 8.392528898 8.322051181 8.609613891 7.782624664 7.773162061 7.753007231 7.417829274 7.391105778 7.803665556 7.597077432 7.954557785 221722723 B_lactamase_A Antibiotic resistance Beta-lactamases Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 9.179761037 9.241815019 9.375536458 8.637521947 8.602271255 8.737477364 8.557685873 8.735616842 8.602198427 8.816633401 8.551835104 8.858440549 93006823 katE Stress Oxygen stress Psychrobacter cryohalolentis K5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter cryohalolentis; 9.040116728 9.232064588 8.911058095 8.435622581 8.436542267 8.649399139 9.27707785 8.510918907 8.855321219 8.342710433 8.429672463 8.382360815 99030630 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 9.333494522 9.388064473 9.07980577 8.733767084 9.064572602 9.345850162 9.457671804 9.261681486 9.333071656 9.532788059 9.448937789 9.659308767 58616642 pcpE Organic Remediation Herbicides related compound Achromobacter xylosoxidans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter; 8.023458005 8.344769882 7.856282815 7.687109462 7.934978657 8.193454164 7.859213213 8.178168748 7.760057563 7.955166156 7.485779767 228709356 glx Carbon cycling Carbon degradation Lignin Bacillus cereus F65185 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 7.484078719 7.137209922 7.252589027 6.544109378 7.534502658 6.822054558 7.105133943 7.212294321 94731722 pstB Stress Phosphate limitation Lawsonia intracellularis PHE/MN1-00 8.130619747 8.032222221 8.495961053 7.743799521 7.564737348 7.343529053 6.917859021 7.338539216 6.889211198 6.929560924 7.654463493 89055304 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 10.24603171 8.793405063 8.565490683 10.19212977 10.04113449 9.760066508 9.986427632 9.985121679 9.296020197 9.817047925 9.621200242 9.461666472 58337837 bglH Stress Glucose limitation Lactobacillus acidophilus NCFM superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus acidophilus; 8.570451889 8.661107952 8.80238118 8.152460343 8.001228516 7.989078216 7.729515436 7.735737532 7.953991976 8.052176705 7.668208441 8.044240194 126249639 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pyrobaculum calidifontis JCM 11548 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum calidifontis; 9.026384343 9.152736926 9.38009613 8.926831484 8.825620493 8.813179135 8.655319787 8.638971535 8.633552388 8.294829984 8.837904523 147919152 pstB Stress Phosphate limitation uncultured methanogenic archaeon RC-I 9.114466604 8.985320095 8.962971206 8.385014573 8.153257531 8.31655543 8.167007993 7.347512596 8.333608657 8.128034466 8.027008582 8.399133532 119949109 ArsC Metal Resistance Arsenic Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 9.073816632 8.868275919 8.964438618 7.964515763 8.241587485 8.288398481 8.132236213 7.857379476 7.892602846 7.772014236 8.208979587 94551563 sigma_24 Stress Sigma factors Candidatus Koribacter versatilis Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 8.307227838 8.338948685 8.469344797 7.901909835 7.864363074 7.605663964 7.92736082 7.580754546 7.280526543 7.655602075 7.767781129 7.803832546 28542629 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.613721999 8.608616529 8.668049562 8.240080977 8.028713433 8.155049902 7.636171347 7.683503691 8.255004977 7.810625815 7.682528159 7.961379666 41395832 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 8.677471933 8.661125508 8.259316644 8.135667842 8.868438382 8.53071713 8.529911248 7.989619368 8.898547342 8.230526719 8.43538815 8.199466076 22651419 HBH Organic Remediation Aromatics BTEX and related aromatics Pseudomonas mendocina 8.570129941 8.783550747 8.456086329 9.337880048 9.409179095 9.270982402 8.895098868 9.597896621 8.810240478 9.117308623 9.263490573 8.904176314 91797601 pimF Organic Remediation Aromatics Aromatic carboxylic acid Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 8.274466711 8.226709445 8.282470099 8.472402256 8.122357985 8.346073029 8.54719123 8.430879843 8.523629501 8.384986718 7.897827612 53988146 CODH Carbon cycling Carbon fixation Stappia marina 8.530076567 8.396399257 8.527740742 7.848844721 7.816724139 7.761771919 7.445393421 7.765884195 8.121748795 7.885833805 7.728947519 8.067973027 88793954 ureC Nitrogen Ammonification Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 8.617935663 8.660540236 8.353154114 8.117708941 7.932833156 7.935526499 7.637771968 7.673083215 7.918521162 8.022124738 8.032183218 71916431 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 8.898413133 8.072578741 8.672974432 8.52637219 8.613024688 8.611446885 8.627047584 8.177262146 8.40016767 8.297766332 8.057156044 56809407 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.573324262 8.670756325 8.756004397 8.308359869 8.43354703 8.353908277 8.366497023 8.243286439 8.41272518 8.314117894 8.364898017 8.327147142 118719753 nitA Organic Remediation Aromatics Other aromatics Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 9.338969794 9.763865442 9.538251919 9.835009286 9.934614001 9.852940048 9.979555042 10.09733379 9.940627088 10.29557062 9.954275927 9.911833943 93356902 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.905067304 9.00456173 8.910284427 8.553262689 8.351494629 8.710642681 9.342178527 8.528386628 9.264728008 8.276691926 8.176580543 8.464772572 193085181 dsrB Sulphur sulfite reductase Chlorobaculum parvum NCIB 8327 8.553072662 8.695149924 8.620658079 7.749766064 7.778604009 7.966394413 8.536757105 7.632755503 8.417503778 8.101830193 8.084941572 8.18929495 115385537 pheA Organic Remediation Aromatics Other aromatics Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 8.484753346 8.049606086 8.634431563 8.303037507 7.984303431 7.819598639 7.479382038 7.121218299 7.652268852 7.917242319 7.749009394 218759844 narI Stress Oxygen limitation Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 8.87621971 8.815788752 8.956463418 8.423821783 8.282018667 8.267473341 8.214338377 8.232272739 8.330562395 8.008180261 7.653395674 8.285423195 118424374 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.442736603 8.370260573 8.499863288 8.114003845 7.988033474 7.923724123 7.956590903 8.265937366 8.102800646 8.210339546 8.128841947 8.363085011 145240877 chnB Organic Remediation Other Hydrocarbons Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8.757835715 8.534825148 9.165967984 8.508365342 8.349771594 7.89169224 7.915517588 7.673013758 7.652684716 7.663276027 8.291975661 25169082 SMR_antibiotics Antibiotic resistance transporter Arthrobacter nicotinovorans superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8.999861926 8.727678865 8.785852114 8.324668947 8.196168938 8.096938253 7.673278831 7.91353492 7.82679612 7.795862955 8.272909748 229864285 Tet Antibiotic resistance other Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 8.208949625 8.222499753 8.566292122 8.195867257 7.891704462 7.883738898 8.155093878 7.925153031 8.457359749 7.785401284 7.90199505 7.812788252 116622215 AceB Carbon cycling Carbon degradation others Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 8.790599059 8.824661454 8.846575302 7.897415073 7.903019658 7.966280553 8.111600553 8.06782219 8.063920411 8.190156238 8.236371229 8.026511229 118173568 SMR_antibiotics Antibiotic resistance transporter Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 9.299174809 9.6397612 9.594105596 9.428579678 9.441441638 9.114216553 9.372667935 9.655646353 9.575552406 9.688284938 9.442822405 9.417464958 182678209 nmoA Organic Remediation Aromatics Nitoaromatics Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 8.131305204 8.407476536 8.154556441 7.946537773 7.945538262 7.677486849 7.421034227 7.858106511 8.100517123 7.751485339 7.744912908 7.855051316 158312423 ArsC Metal Resistance Arsenic Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.937751996 8.94560554 8.576637327 9.240773534 9.084446718 8.933776543 9.317786207 9.156620597 8.945460465 9.228154377 9.279878783 8.895686059 91788876 pimF Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 8.771973814 8.775499747 8.64328446 8.205964541 8.152645489 8.387033218 8.374160471 8.043283764 8.616820474 8.035795103 8.300365207 8.160000426 55230681 ZntA Metal Resistance Zinc Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 9.307054371 9.317284694 9.103675782 8.543759641 8.520469036 8.733826458 8.516531122 8.654741742 8.507100446 8.318215883 8.551060699 149937760 cda Carbon cycling Carbon degradation Starch Parabacteroides distasonis ATCC 8503 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides distasonis; 8.391335327 8.359672975 8.537342851 8.405790988 8.610023418 68347720 vanA Carbon cycling Carbon degradation Others Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 9.903221354 9.858397599 10.10805149 9.67967563 9.465218232 9.615041912 9.71067347 9.563256474 9.268406242 9.773847238 9.738749631 9.72647216 152056 AmiE Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.436285386 8.550337962 8.585209176 8.238332516 8.092243867 8.447934413 8.383537488 8.17847695 8.048048325 8.122282472 8.34456635 50951171 glnA Stress Nitrogen limitation Leifsonia xyli subsp. xyli str. CTCB07 8.522144195 8.476897803 8.409900827 8.378603445 8.319337955 8.470378127 8.346518677 8.46287896 8.302233523 8.190846689 8.643047343 8.410811565 95110302 glnA Stress Nitrogen limitation Pseudomonas entomophila L48 8.643433857 8.612143587 8.831049812 7.986454371 7.794437451 8.464979298 8.496992061 8.009327606 8.773889087 8.093543803 7.814044542 8.283862292 218439121 trzE Organic Remediation Herbicides related compound Cyanothece sp. PCC 7424 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 9.45822073 9.361215164 9.759538765 8.692160158 8.562281981 8.709107365 8.357234556 8.463740658 8.684521312 8.773179223 8.824051936 256781200 sigma_24 Stress Sigma factors Streptomyces hygroscopicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces hygroscopicus; 8.498217322 8.594857763 8.220801231 8.332001639 8.052048305 8.04650231 8.57638784 8.198040414 8.437858176 7.794975072 8.153610077 7.763476102 187717724 sigma_24 Stress Sigma factors Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 9.410344043 9.318376948 9.279249274 8.998431256 9.232939918 9.038493636 9.275550014 9.026941967 8.997169449 9.551098294 9.172440346 91780241 exaA Organic Remediation Chlorinated solvents Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.738840373 8.73412032 8.589270448 8.12006957 8.215656148 8.241655999 8.043476053 7.968041899 8.034822836 8.318067811 94495106 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.438064475 8.378723721 8.196963808 8.312881016 8.297365449 8.482502944 8.256498482 8.446904388 8.54413527 8.245978106 8.602545934 8.253097468 84375752 amyA Carbon cycling Carbon degradation Starch Vibrio splendidus 12B01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 8.294731352 8.300525942 8.629901839 7.783000581 7.693712177 7.472976705 7.593939313 7.474353449 7.956258033 7.69058877 7.593928367 7.818397069 67845245 pstC Stress Phosphate limitation Erwinia amylovora superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia; 8.191672009 8.066491486 8.461822594 8.699522781 8.416479962 7.999816987 8.749694785 8.310302898 8.690718592 8.600697134 8.600968075 59892060 nifH Nitrogen Nitrogen fixation uncultured forest soil bacterium superkingdom:Bacteria; 8.826764718 9.01253969 9.079744673 8.233752622 8.013972617 8.106038821 7.828125451 7.713440771 8.037570702 7.888987361 7.870185775 8.265613237 118669130 ChrA Metal Resistance Chromium Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 9.573462669 9.660950167 9.790520264 8.790987028 8.896424009 8.990814384 9.162229323 8.795446321 8.801016601 8.805304918 9.084118744 115522280 oxyR Stress Oxygen stress Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.631657609 9.748000194 9.931511769 9.624660701 9.209320166 8.898522488 9.128784751 9.532348379 9.308235001 9.264682643 9.249212333 9.483556272 220710110 Catechol Organic Remediation Aromatics Other aromatics Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.929379848 8.760954776 8.608876539 9.266044871 9.030285656 8.632886109 8.987650292 9.213166432 8.832483985 9.104770212 9.209709634 8.527053812 83317026 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.046605983 9.282945142 8.979057797 8.908715323 8.502544847 9.545118227 9.762936139 9.390316262 9.45205622 9.209032062 9.543722676 9.605519945 32453667 scaffold Bacteria phage STRUCTURAL Enterobacteria phage RB69 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 8.879610532 8.875757826 8.89330886 7.822206507 8.118781785 8.166481405 7.944078957 8.195750924 8.538964502 8.511799993 8.519549425 8.255590483 227091386 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glucuronolyticum; 9.204195565 9.374719895 9.20485376 8.483971649 9.018730572 9.205971438 9.667205801 8.670815596 9.535439042 8.918510957 8.933011786 8.997602343 163740884 pcc Carbon cycling Carbon fixation Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 8.739874117 8.694367466 8.078508209 8.368061837 8.539219946 8.904557367 7.850919156 8.932718312 8.306534558 8.096656673 8.523547758 258510244 sigma_24 Stress Sigma factors Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 8.784743327 9.222455132 9.147006945 9.201979381 9.25035296 9.275018625 9.30380501 9.370957766 9.047627129 9.316797041 9.168177109 8.833947198 118669271 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 9.554207022 9.615688296 9.608410304 9.090802799 9.203928192 9.278802813 10.05211288 9.139965062 9.917938552 9.445026012 9.297211241 9.396058772 189339000 CusA Metal Resistance Copper Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 8.388792384 8.311566415 8.237471082 8.157666003 8.047899716 7.873542903 7.7528996 7.894633456 7.953248405 7.83126538 8.144669704 62425588 linB Organic Remediation Pesticides related compound Brevibacterium linens BL2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium linens; 8.519482521 8.688868092 8.68074861 9.048320889 9.240309351 9.15838519 9.405623168 8.87441758 9.240825304 9.222383535 9.119075929 260362554 iuc virulence aerobactin Vibrio parahaemolyticus K5030 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 9.141645444 8.84518658 9.235489273 8.445213989 8.349651254 8.356729278 8.366065305 8.099812313 8.307478357 8.390887084 8.528767895 253580083 dsrB Sulphur sulfite reductase Ruminococcus sp. 5_1_39B_FAA 8.057577134 8.104603931 6.912076074 7.426181542 7.066167943 6.943764437 7.307683737 145229965 BpH Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 9.598026077 9.487142565 9.601293287 8.645948199 8.656212584 8.622688761 8.572727949 8.267159553 8.669199723 8.512255065 8.766770882 8.913694693 257780149 obgE Stress Radiation stress Desulfotomaculum acetoxidans DSM 771 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum acetoxidans; 8.38517697 8.475306745 8.548502252 8.27728869 8.02179265 7.82792142 8.118706807 8.133951029 8.314254201 8.354390518 8.091438133 7.844252327 12698725 glnA Stress Nitrogen limitation Azospirillum brasilense 9.205453922 8.786383559 8.746869533 9.099455468 8.846389298 8.787706794 8.831121603 9.088825929 8.798812454 8.917845556 8.865571107 8.832453915 196196179 silC Metal Resistance Silver Alcanivorax sp. DG881 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 8.607371636 8.268379726 8.561552729 7.977681551 7.932152566 8.229196187 8.228642779 7.900226376 8.310017824 8.092380164 8.17005075 8.027853751 260463627 fnr Stress Oxygen stress Mesorhizobium opportunistum WSM2075 9.346160629 9.075420273 8.349278063 9.589824073 9.496139221 9.403706013 9.837349903 9.571314045 9.138477482 8.879827552 8.984085488 8.981620581 87199696 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 8.759919036 8.5382845 8.594006664 8.444366328 8.385582172 8.186355166 8.284965989 8.709811036 8.473006642 8.738947489 8.53744412 8.711373748 120326977 mer Metal Resistance Mercury Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 8.314999469 8.362624573 7.793869249 7.7611443 7.927891678 8.049559731 8.315971942 8.175800502 8.268407116 8.211832257 118424316 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.171572698 8.524896043 7.597896167 7.540466228 7.525847204 7.52805338 7.564040546 7.403841102 7.657697859 154638 nifH Nitrogen Nitrogen fixation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus; 8.376635354 8.145650728 8.121417129 7.687514892 7.518792943 7.695756797 7.688813407 7.344592625 7.965437626 7.323291839 7.259734835 7.359206831 94551291 ZntA Metal Resistance Zinc Acidobacteria bacterium Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 9.020659661 9.219376441 8.989003952 8.157843281 9.264710869 9.200658172 9.25220348 9.231591403 9.114713599 9.445537447 9.106654698 188989789 pcaG Organic Remediation Aromatics Other aromatics Xanthomonas campestris pv. campestris str. B100 8.677229742 8.621373066 8.183856159 8.577036221 8.74797021 8.433984143 8.554111688 9.011627796 8.233928642 9.005618053 8.849187289 8.977843992 118433726 hrcA Stress Heat shock Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 8.125703373 8.251223228 8.414143887 8.304935504 8.336002101 8.042666839 8.179670718 8.410074877 8.332737136 8.369516289 8.184420644 8.451318745 3157722 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 9.267676868 9.192238156 9.474314907 8.596124583 8.489791284 8.421791665 8.062490171 7.825093967 8.387977189 8.210490149 8.324390173 8.64334926 110636077 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 9.356368265 9.328315969 9.324616728 8.67085761 8.505575381 8.630758157 8.241161433 8.174317371 8.509758761 8.36573059 8.257200174 8.850629378 160362816 xylJ Organic Remediation Aromatics BTEX and related aromatics Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 10.25217467 10.3375104 10.21464073 9.563030614 9.648827965 9.662842449 9.687367679 9.204244726 9.960610491 9.600635532 9.652804974 9.813407429 148523557 CopA Metal Resistance Copper Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 8.217200762 8.305752078 8.048596832 8.139063693 7.833390385 7.905681974 8.19679185 8.061434318 8.372654627 7.866831223 7.923871892 27349592 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.746481238 8.955455279 9.024865502 8.452609909 8.473949339 8.284481037 8.484201276 8.419996335 8.400452959 8.631735046 8.591056406 8.484281596 15623688 related_thiosulfate_gene Bioleaching Sulphur Sulfolobus tokodaii str. 7 7.928752156 8.280151532 7.279973576 7.411146702 7.303072362 7.248643828 7.096354744 7.332889459 170692657 phdCI Organic Remediation Aromatics Polycyclic aromatics Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 9.736412725 9.401135608 9.057680345 9.560151533 9.203521896 8.642521555 9.53191528 9.595528226 9.386904468 9.24090736 9.051261637 9.022763171 19909555 gyrB other category gyrB Rhodothalassium salexigens superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodothalassium; 9.631789707 9.651202324 10.06836671 10.31667772 10.07274476 9.694851928 9.867892745 10.48470678 9.972155377 10.07548589 9.615515045 10.17050249 214035802 ppx Phosphorus Phosphorus utilization Carboxydibrachium pacificum DSM 12653 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Carboxydibrachium;species:Carboxydibrachium pacificum; 8.495372756 8.269029412 8.63838559 8.012809254 7.792461599 7.59142841 6.82735479 7.713872566 7.226831769 7.840984585 78093582 narG Nitrogen Denitrification uncultured bacterium 8.807207285 8.610517024 8.546597613 8.444041823 8.41928316 8.40267613 8.426436839 8.475181082 8.393351908 8.571891908 8.636282591 8.481223007 170695798 MFS_antibiotic Antibiotic resistance transporter Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 8.687963437 8.758404638 9.122577007 8.893837791 8.829306565 8.519263969 8.898020613 9.242894094 8.985530652 9.084711526 8.487067542 8.845264628 18958172 hdnO Organic Remediation Aromatics Heterocyclic aromatics Arthrobacter oxydans superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8.174813661 8.292370032 8.588360469 8.069791503 7.83134617 7.616825343 7.551961876 7.485915121 7.467063825 7.686095435 7.882374306 145620593 CopA Metal Resistance Copper Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 9.030352819 9.171118548 9.324491626 8.649451015 8.62044241 8.60678972 8.439474708 8.057870287 8.632971016 8.719756272 8.835437617 260215783 endochitinase Carbon cycling Carbon degradation Chitin Cronobacter turicensis z3032 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter turicensis; 9.320609352 9.206623581 9.290462951 8.699573082 8.826694575 8.632247405 8.788034838 9.122615295 9.217520685 9.248909947 9.328712545 9.270583179 119958185 CDD Organic Remediation Aromatics Other aromatics Mycobacterium vanbaalenii PYR-1 9.179980816 8.479759058 9.098349867 8.384413265 8.325590173 8.381200275 8.1745046 8.189407853 8.248622235 8.110032994 8.066852096 8.22194163 63081980 nosZ Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 9.344211513 8.670037516 8.470667914 8.905211617 9.104699343 8.742261759 9.047007484 8.951130429 8.786904428 8.854842071 8.692464554 8.757654348 260861994 ctsR Stress Protein stress Selenomonas sputigena ATCC 35185 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sputigena; 9.019131371 8.881524039 8.819373509 8.532694937 8.406485046 8.209944502 8.231855341 8.157164759 8.807096551 8.308619465 8.281055071 8.624927789 75701251 vanA Carbon cycling Carbon degradation Others Anabaena variabilis ATCC 29413 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena variabilis; 8.806261576 8.748261877 8.935520777 8.217660307 8.151323969 8.236234975 7.828704492 7.699692208 7.865429141 7.997687448 7.871442959 8.255152714 154156025 chnB Organic Remediation Other Hydrocarbons Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 8.954814053 8.55717771 8.328484381 8.997331744 9.026636377 8.999924014 8.585357923 9.014072441 8.681435088 8.886640661 9.037978751 8.966179142 144945974 nrfA Nitrogen Dissimilatory N reduction Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 9.3556209 9.465333933 9.396395031 8.745572121 8.523292645 8.650415632 8.299706632 8.421122276 8.406291945 8.595721662 8.313589343 8.910855459 94554519 phoB Stress Phosphate limitation Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 9.097318481 8.988631579 8.759463696 9.55727308 8.8264275 8.424782694 9.290788649 9.285324684 9.21422568 9.057543372 9.154358381 8.892945633 229823904 cda Carbon cycling Carbon degradation Starch Catonella morbi ATCC 51271 8.355235117 8.131191414 7.495453115 7.43749762 7.358005143 7.364243538 7.096174323 7.763996455 7.324026803 7.561716459 49482927 ZntA Metal Resistance Zinc Staphylococcus aureus subsp. aureus MRSA252 8.347181693 8.251875356 8.277114661 7.561385717 7.555509229 7.728844862 7.367276773 7.219835599 7.777667512 7.384066167 7.09394698 7.762120678 117996270 pcc Carbon cycling Carbon fixation Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 8.499696842 8.749371349 8.86389518 8.183945217 8.166534016 8.265112389 8.547457612 9.103064946 8.311944718 8.776811057 8.670608851 8.665536044 116196128 nagG Organic Remediation Aromatics Aromatic carboxylic acid Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 9.451245623 9.220781579 9.456242159 8.822419841 8.728461549 8.522713646 8.728392803 8.679930724 8.419997672 8.868852244 8.634661399 8.898354592 110594277 CopA Metal Resistance Copper Acidovorax sp. JS42 8.803116594 9.241445036 8.880702275 8.994520611 9.369365334 8.947218508 9.482163265 9.324840013 9.193794615 9.279045383 9.479395439 9.156452401 117980996 ChrA Metal Resistance Chromium Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 9.63347186 9.060948914 8.884708929 9.900795039 9.529730341 9.310681255 10.00677624 9.826241559 9.918660503 9.580968813 9.695659919 9.557051583 83859093 alkK Organic Remediation Others Oceanicaulis alexandrii HTCC2633 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis;species:Oceanicaulis alexandrii; 8.661245059 8.385691219 8.523798488 7.91883877 7.85571897 7.190810261 7.300892597 8.095548007 7.696166423 7.91657715 7.890656241 1652792 sigma_70 Stress Sigma factors Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 9.007971063 8.971118386 9.266840912 8.483622406 8.582084505 8.354613129 8.432880243 8.73413067 8.856613656 8.927301632 8.95154616 153840480 sigma_24 Stress Sigma factors Vibrio parahaemolyticus AQ3810 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 8.287286974 8.140528553 8.188198631 7.594834728 7.756274704 8.011154301 8.250113998 7.287869779 7.551476575 7.446047259 7.471842204 116099637 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Lactobacillus brevis ATCC 367 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus brevis; 9.107687207 8.911120538 9.180989173 8.344030409 8.386986045 8.459468706 8.283319712 8.38157132 8.314814371 8.602558121 8.543420934 8.660047323 89347328 pcc Carbon cycling Carbon fixation Rhodoferax ferrireducens DSM 15236 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 8.475585037 8.224928149 8.281739596 8.178093302 8.12161133 8.222957906 8.547681885 8.645447816 8.292976331 8.721586524 8.540618519 8.776073522 55981190 pilin virulence pilin Thermus thermophilus HB8 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 8.760383491 8.716127625 8.697720078 7.940101716 7.876687159 7.916202969 7.948487126 7.706067322 8.131586805 7.762407129 7.841459933 8.117655403 39545769 iro virulence Aeromonas hydrophila superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas; 9.853012496 9.807322896 9.709081987 10.08960028 10.0861164 9.882896651 10.22640254 10.14398398 9.915029475 9.889882891 9.794623998 9.683767728 145608542 nagG Organic Remediation Aromatics Aromatic carboxylic acid Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 8.446082288 8.349102424 7.339970818 7.974878597 7.877871498 8.351431675 7.47235991 8.057692607 7.709898465 8.137465114 157913910 CadA Metal Resistance Cadmium Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 9.228884656 9.066686961 9.369546321 8.750176694 8.63920481 8.488618577 8.450318247 8.588984406 8.742601078 8.807898253 8.498843877 8.856391612 237746574 pstA Stress Phosphate limitation Oxalobacter formigenes HOxBLS 8.71631841 8.612143587 8.437374216 8.384350864 8.637265798 8.545850543 8.569754025 8.731393987 8.635244991 8.664532417 8.497060063 8.470556105 145217438 chnB Organic Remediation Other Hydrocarbons Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.729743627 8.836848377 8.494071732 8.261588521 8.457057988 8.371974598 8.620009869 8.586733629 8.579446129 8.11257661 8.468980061 8.294482032 38427020 narG Nitrogen Denitrification uncultured bacterium 8.792720187 8.630309981 8.94327088 8.279836671 8.412736587 8.422483835 8.744009433 8.505388498 8.760083559 8.46229976 8.635830108 8.522500554 115522776 proO Organic Remediation Aromatics Other aromatics Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.806781831 8.918959131 8.091720317 8.300289926 8.316709028 8.086906709 8.388495729 8.412109297 8.248518867 8.177184132 7.956195429 255115521 pstA Stress Phosphate limitation Thermoanaerobacter italicus Ab9 8.949170941 8.970384309 8.879474175 8.384933663 8.307086319 8.194945048 8.011055573 7.944436145 8.00197563 8.039551763 7.954392929 8.235156163 212687056 nagI Organic Remediation Aromatics Aromatic carboxylic acid Providencia alcalifaciens DSM 30120 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 9.211690555 9.234718846 9.492626827 8.810973825 8.455994703 8.408657351 8.320217897 8.859660917 8.747863487 8.614691496 9.271803803 194337614 pstB Stress Phosphate limitation Pelodictyon phaeoclathratiforme BU-1 8.785951027 8.572567547 8.746016821 8.083423629 7.352324417 7.91457256 7.853887577 7.28240425 7.668674623 7.797783791 7.910018455 212687978 phoA Stress Phosphate limitation Providencia alcalifaciens DSM 30120 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 8.349453249 8.279950116 8.43995306 8.110466348 7.47813997 7.80083383 8.221243634 8.354713655 8.204184915 8.187005203 7.822152633 8.204845 94310675 silC Metal Resistance Silver Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 9.655845051 9.67428143 9.589726281 9.118902044 9.51199248 9.445281788 9.82824703 8.795333918 10.24438557 9.07928772 8.733426315 9.128183187 90426391 pstB Stress Phosphate limitation Rhodopseudomonas palustris BisB18 10.53343545 10.5344322 10.34945871 9.785651865 10.45076132 9.541999518 9.410851235 9.762701876 9.824217377 10.14895002 9.741411703 90419915 glnA Stress Nitrogen limitation Aurantimonas manganoxydans SI85-9A1 9.682245487 9.793392299 9.387341042 9.11014469 9.135629108 9.210689405 9.719680632 9.353077386 9.461506368 9.486088512 9.540335183 9.235546313 16331541 pstA Stress Phosphate limitation Synechocystis sp. PCC 6803 8.156183248 8.187595568 7.396475718 7.403480539 7.411700293 7.170150929 6.685949825 7.646759927 7.241501249 7.002729202 7.468243373 56698510 nagG Organic Remediation Aromatics Aromatic carboxylic acid Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 8.511677083 8.376190741 8.316780435 8.510232691 8.540529738 8.084701871 8.903893159 8.185035241 8.255898399 8.446703338 8.375239987 257200980 ppk Phosphorus Phosphorus utilization Roseburia intestinalis L1-82 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia intestinalis; 9.400711254 9.444916509 9.621912166 8.821279106 8.728446404 8.744777754 8.293507137 8.400684222 8.578181095 8.508788818 8.864603321 169830749 Al Metal Resistance Aluminum Candidatus Desulforudis audaxviator MP104C superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Candidatus Desulforudis;species:Candidatus Desulforudis audaxviator; 8.556475603 8.754159439 8.642345893 8.468129635 8.458603949 8.312435447 8.402722759 8.710618575 8.549274441 8.638083447 8.441126582 8.423607781 260845868 ureC Nitrogen Ammonification Escherichia coli O103:H2 str. 12009 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 7.416135157 7.295173712 7.77757411 7.585565304 7.58032968 7.182636139 7.202951136 156863454 bphF1 Organic Remediation Aromatics Polycyclic aromatics Clostridium sp. L2-50 8.060136861 8.107218201 7.392324676 7.167759358 7.033128252 7.056004811 160356822 obgE Stress Radiation stress Bacillus selenitireducens MLS10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus selenitireducens; 8.193889026 7.971352102 8.129126247 7.470295994 7.596058473 7.605336901 7.66271035 7.42492439 7.942469058 7.158915106 7.280245488 7.655981325 94471355 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.596249951 8.894015066 8.796334097 8.894489494 8.954292976 8.992754184 9.11566864 9.030489521 8.929463293 9.385705151 9.378240665 8.946607455 81251655 nirS Nitrogen Denitrification uncultured organism 9.024936043 8.834597961 9.115550122 8.370587449 8.620908864 8.502356354 8.198854694 8.693344665 8.567883468 8.983974271 9.038224603 8.801394619 148912767 terminase_large_subunit Bacteria phage REPLICATION Pseudomonas phage F10 order:Caudovirales;family:Siphoviridae; 8.020620921 7.888910478 7.476486634 7.361542587 7.378224581 7.249504241 7.246453176 7.678357808 7.258663378 7.432669341 7.360387659 508289 bphA Organic Remediation Aromatics Polycyclic aromatics Burkholderia cepacia 8.405696556 8.440019785 8.01776512 7.875930131 8.086420579 8.205195778 7.967600747 8.315321796 7.971609217 8.201316554 8.005276991 152981908 ChrA Metal Resistance Chromium Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 9.086447942 9.161966422 9.335277446 9.333926629 9.211944215 8.860217631 9.307489551 9.663238107 9.408843895 9.403536588 8.845599612 9.225663839 83592302 CODH Carbon cycling Carbon fixation Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 8.280617356 8.165300011 8.066227461 8.069797637 7.674171037 7.914747918 8.264471598 7.860996917 7.665959619 7.412775228 7.118551985 195933595 pstC Stress Phosphate limitation Hydrogenobaculum sp. Y04AAS1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenobaculum; 9.171857854 9.105949428 9.176301641 8.277644604 8.253799831 8.21612761 8.041202319 7.746794615 8.163349166 8.083115853 8.025568853 8.496992218 118706975 xylJ Organic Remediation Aromatics BTEX and related aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 10.16582646 9.906168186 9.915371436 9.706166327 9.614112677 9.547090332 9.588295104 9.340624118 9.852054809 9.491912448 9.659869575 9.520030296 44829113 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.310796124 8.289913652 7.66522925 7.900271841 7.692618597 8.256693027 7.968314304 7.845684374 7.780231789 7.767296505 255336734 sigma_32 Stress Sigma factors Hyphomicrobium denitrificans ATCC 51888 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 9.508596323 9.587573322 9.459832153 9.06934069 8.928671487 8.934995813 8.891064367 8.71625048 9.234203434 8.937893281 9.126741949 9.080683156 73762984 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.150221977 9.412535095 9.271406867 8.67921029 8.629789756 8.783125111 9.23999329 8.735978633 9.033461712 8.531318232 8.790798135 8.565698813 256847165 hly virulence hemolysin Lactobacillus coleohominis 101-4-CHN superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus coleohominis; 8.85335898 8.501988788 8.514949757 7.977169755 7.91564519 7.946996448 7.68455943 7.687643876 8.10523354 7.784548915 7.682097383 7.950710824 121606973 CopA Metal Resistance Copper Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8.655919137 8.719974504 8.76387603 8.094128183 8.455775204 8.419385843 8.546868668 8.137224276 8.30751069 8.466616366 8.426078482 212545246 BADH Organic Remediation Aromatics Other aromatics Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 9.035298419 9.036480624 9.071504403 8.395595897 8.381568275 8.376839388 8.258669073 8.383017243 8.316345984 8.330654026 8.435136959 8.708073576 85775835 nrfA Nitrogen Dissimilatory N reduction Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 8.395368988 8.54341825 8.571860895 8.318781548 8.184388646 8.176852417 8.07683004 8.151237754 8.21517773 7.963210417 7.919608002 116621051 exaA Organic Remediation Chlorinated solvents Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 8.959563459 9.297386543 9.247813648 9.424120519 9.449723376 9.106839154 9.396005856 9.412912302 9.267273753 9.364347972 8.93817841 8.629041834 29828669 nirA Nitrogen Assimilatory N reduction Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 8.662700135 8.631579337 8.779288156 8.690713974 8.392337904 8.802026707 8.708420613 8.523797918 8.6668104 8.767341139 8.607048143 218246380 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Cyanothece sp. PCC 8801 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 9.114570878 8.983808549 9.195183121 8.461297378 8.439870308 8.308614455 8.27253738 8.200946969 8.469033587 8.330503252 8.194892546 8.58806245 150835469 pmdAB Organic Remediation Aromatics Others Marinomonas sp. MWYL1 8.657333921 8.611547373 8.786835339 7.932574746 7.81604971 7.924129649 8.09758377 7.619255307 8.637949465 7.930899785 7.621575945 8.031540196 257803655 ahpF Stress Oxygen stress Enterococcus gallinarum EG2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus gallinarum; 8.689213992 8.572493341 8.281312045 8.239747286 8.067846139 8.21731928 8.4267392 7.152723904 7.956539066 8.300400249 112462903 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.516618932 8.684676595 7.874312182 8.122074002 8.784064721 8.938469352 8.450144977 8.365706514 8.395681491 8.473393209 8.176357416 115365848 pstC Stress Phosphate limitation Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 8.502793468 8.296919628 8.033277654 8.10781587 8.09535112 8.207210282 8.281232493 8.228595076 8.116601887 8.086194777 150007698 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Parabacteroides distasonis ATCC 8503 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides distasonis; 8.514325279 8.497230248 8.516527678 8.097089574 8.309745001 7.960309283 7.762664737 8.037447987 8.073573713 8.097750605 8.181162745 78195174 ahpC Stress Oxygen stress Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 9.455793015 9.611374526 9.488615887 9.176964514 9.229867768 9.128768095 9.186302374 9.20659844 9.489799014 9.309962473 9.341784833 9.409870738 227993777 oxyR Stress Oxygen stress Meiothermus ruber DSM 1279 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 7.432809995 7.207812948 7.145686675 6.9766131 7.209871257 7.653749361 7.194029512 7.385958689 7.308370922 110335253 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 8.838130334 8.783126174 9.095617269 8.605329057 8.708529121 8.537917391 8.769186159 8.667169483 8.711712508 8.98999381 8.780701548 8.267833891 255325774 SMR_antibiotics Antibiotic resistance transporter Corynebacterium tuberculostearicum SK141 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium tuberculostearicum; 8.642809637 9.130248339 8.883474298 8.27919421 8.756440121 8.573762574 8.717595775 8.894587774 8.835207454 8.892265272 8.851075918 8.862989917 88812719 TerD Metal Resistance Tellurium Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 9.881087966 9.779916875 9.540403976 9.352948698 9.442273515 9.44706039 9.262092212 9.785769399 9.506894516 9.558990862 9.737954293 218888277 hydrogenase Energy process Energy process Desulfovibrio vulgaris str. 'Miyazaki F' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 8.777582066 8.754234068 8.800997055 8.417653025 8.270657377 8.267358316 8.156962576 8.420007891 8.293440905 8.684176569 8.667762598 8.615205559 145603717 glx Carbon cycling Carbon degradation Lignin Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 8.440522593 8.508191659 7.613066178 7.826227597 7.940075528 8.104934554 7.738096621 8.544940315 7.793939285 7.733196799 7.987909948 111222973 bbsG Organic Remediation Aromatics BTEX and related aromatics Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 9.265467588 9.303339178 9.251561102 9.015994264 8.826348577 9.025952099 9.250364001 9.093066981 9.210517909 9.243429097 9.529543916 9.323957858 192764484 narG Nitrogen Denitrification uncultured bacterium 8.779949569 8.805400954 8.657341602 8.19546864 8.403465006 8.403823114 8.502023669 8.213107828 8.451436993 8.308097302 8.467221655 8.549499288 84515379 sigma_70 Stress Sigma factors Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 8.657429996 8.406307124 8.280616717 8.389981783 8.074945398 7.871071036 8.23734091 8.302522602 7.986716913 7.920009778 7.9873234 119378072 phn Organic Remediation Herbicides related compound Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 9.459403162 9.463402653 8.846498155 8.314151102 8.401248155 8.871683099 9.302369559 8.728749039 9.131109975 8.476669461 8.808133615 8.405100725 223932470 obgE Stress Radiation stress Streptococcus suis 89/1591 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus suis; 8.326721553 8.217923396 7.545394254 7.400464706 7.596852091 7.12084673 7.537547806 7.335759769 7.199898557 7.626932722 13620786 bphF1 Organic Remediation Aromatics Polycyclic aromatics Streptomyces coelicolor A3(2) 8.551330605 8.808630464 8.841989414 9.004363608 8.807421184 8.445821942 8.746513386 8.945519474 8.948106886 8.882293433 8.524304574 8.333117076 24940371 dehH109 Organic Remediation Chlorinated solvents Rhizobium sp. NHG3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 8.07305952 8.091498363 7.56404159 7.533448752 7.815790043 7.445055773 7.555658978 8.005841776 7.365687653 7.314884557 149376515 tfdA Organic Remediation Aromatics Chlorinated aromatics Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 8.411400002 8.528572066 8.559229922 7.790231377 7.569772385 8.055933708 7.725545091 7.416723088 7.836529622 7.962695255 8.046778304 206586917 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 8.681713916 8.542582005 8.966525155 8.877041501 8.711151492 8.560378473 8.823121134 9.338130083 9.033242255 9.277178263 9.115069787 9.479459509 182633340 dehH Organic Remediation Chlorinated solvents Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 7.18266328 7.075376981 20520730 pimF Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 9.48728597 9.707945489 9.541832161 9.359918047 9.663646204 9.502280698 9.194302433 9.77704543 9.240025755 9.526925486 9.468609953 9.601728239 76577396 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.284034047 9.276575476 9.17781972 8.717702815 8.587859613 9.021354271 9.183048338 8.912065238 9.171667438 9.007336032 9.004833608 9.225440497 32470881 NiR Nitrogen Assimilatory N reduction Rhodopirellula baltica SH 1 9.760404888 8.866147645 8.605528856 8.561911557 8.497801738 8.680327649 8.564395931 8.809558122 8.639321461 8.802365024 8.656514703 126105557 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 8.164666068 8.05879528 8.382265151 7.31246389 7.587050116 8.10888943 8.177831322 7.738251374 8.182737874 8.085415668 7.884079526 7.92082752 209897542 ppx Phosphorus Phosphorus utilization Enterobacter cancerogenus ATCC 35316 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 8.363307502 8.233513861 8.081611852 8.246038655 8.288006693 7.9790263 7.975013263 7.77149971 270738485 sigma_32 Stress Sigma factors Desulfovibrio aespoeensis Aspo-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio aespoeensis; 8.41780392 8.188102743 8.28141594 7.881045974 8.05849021 8.516847821 8.472911308 8.297989296 8.524236327 8.41551352 8.039680009 8.161743958 114228090 nitA Organic Remediation Aromatics Other aromatics Alkalilimnicola ehrlichei MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 8.295992956 8.457069359 8.409055554 8.540227192 8.823613486 8.565348776 8.567738448 8.974557468 8.673891932 8.871779981 8.576419821 8.585728498 283440389 sigma_24 Stress Sigma factors Pirellula staleyi DSM 6068 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Pirellula;species:Pirellula staleyi; 8.607566436 8.360319209 8.116891011 7.996487482 7.822523738 8.71126296 8.770528712 8.187218193 8.624981097 7.965713868 8.257208832 8.338174183 90336628 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 7.536675943 7.711743912 7.295863166 7.587493784 7.707050926 7.343179714 7.768938674 7.631707921 91721294 gyrB other category gyrB Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 8.289272251 8.102871763 8.119178125 7.828857085 7.810391471 7.77505442 7.442889918 7.720731604 8.042893065 7.744904489 7.795350109 7.809233453 167594237 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 8.628339786 9.074430004 8.962426981 8.345865437 8.342232822 8.407803525 8.839499648 8.217227069 8.723604586 8.258839982 8.166999598 8.256841523 85069066 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.694723067 8.939348035 8.723526698 8.192163046 8.11706791 8.268483714 7.981457226 7.689617123 7.968976153 8.156183596 8.335848334 114226940 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Alkalilimnicola ehrlichei MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 8.542824619 8.422414529 8.717238532 8.32919305 8.193587869 8.137407128 8.071527783 8.233509968 8.115817385 8.157301257 8.141306743 8.455918348 119669004 pimF Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8.730598669 9.050602542 8.521369794 8.780141949 9.22972077 9.519956983 9.224223388 9.525908401 9.231706237 9.420589396 9.43225962 9.532505886 163739821 ahpC Stress Oxygen stress Phaeobacter gallaeciensis BS107 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 9.824971831 9.669599179 9.795440154 8.879760639 9.165323456 8.9415466 9.32195937 9.126226144 9.558599995 9.059171713 9.143449791 9.101865239 120595331 pimF Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8.271432649 8.301624606 8.451635608 8.120684708 8.212705844 7.91072947 8.530538445 7.89831628 8.157247768 8.321850365 8.135651638 108463154 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 9.30414006 9.371932906 9.73086614 9.312942026 9.422726662 9.153890291 9.120632922 9.048743208 9.3733549 9.436163025 9.469288646 9.135089519 120556269 dnaK Stress Heat shock Marinobacter aquaeolei VT8 8.290706433 8.107734552 8.013325935 7.542064245 8.005168138 7.941835076 8.039190591 8.130345297 7.710208484 110680817 dmsA Organic Remediation Others Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 9.228749029 8.945579122 9.099818198 8.509170291 8.702060139 8.33448598 8.189130695 8.377365688 8.229306361 8.334634673 8.565301117 8.667943889 148591751 phenol_oxidase Carbon cycling Carbon degradation Lignin Verpa conica superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Pezizomycetes;order:Pezizales;family:Morchellaceae;genus:Verpa; 8.967451168 8.751650674 8.634541586 8.518030426 8.249449335 7.913852595 8.356780898 8.30672871 8.411575934 8.296758908 8.207069106 7.879875098 251791760 pstC Stress Phosphate limitation Dickeya zeae Ech1591 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 8.058027146 7.999938027 8.009785407 8.028839665 7.865607461 7.596609324 7.775199164 8.099833802 7.741271638 7.751045499 7.928511811 270494734 sigma_70 Stress Sigma factors Acidovorax avenae subsp. avenae ATCC 19860 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax avenae; 8.261479952 8.084274244 7.914571724 8.237269174 8.383329974 8.134479168 8.187254088 8.187515326 7.798305803 8.178543216 7.869710991 44829101 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.197797783 8.386758439 7.573282062 7.571055162 7.554827327 7.208166596 7.136353571 7.453404776 7.297856243 7.440921809 134134868 CadA Metal Resistance Cadmium Burkholderia vietnamiensis G4 7.890236458 7.554275648 7.464949848 7.748431111 7.763653258 8.230511621 7.722656277 7.442396893 7.797936618 104304159 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 8.793579957 8.654969026 8.946992019 8.606702603 8.41667041 8.412331684 7.722522976 7.924832101 8.173604471 8.143302059 8.205845492 8.234373787 229792636 cda Carbon cycling Carbon degradation Starch Shuttleworthia satelles DSM 14600 8.317297069 8.410367748 8.328823092 8.27097171 8.209763688 8.148628717 7.666941854 7.662936014 8.083914045 7.930599931 7.918283799 8.05283904 170721391 atzC Organic Remediation Herbicides related compound Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.773019753 9.064922503 8.73823014 8.334160075 8.579092727 8.936865479 9.451707168 9.017166101 9.57605028 8.703282015 8.791248275 8.653085474 118046180 catechol_B Organic Remediation Aromatics Other aromatics Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 7.56046751 7.717363832 7.42010422 7.481785812 8.082652128 8.045238239 8.135252368 7.851382728 7.742875469 149144079 obgE Stress Radiation stress Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.329449764 8.536477531 7.675292779 7.293942173 7.715012958 7.388484671 7.150991165 7.593874762 7.564948766 7.67863933 7.832644206 252125642 obgE Stress Radiation stress Corynebacterium matruchotii ATCC 14266 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium matruchotii; 9.171348981 9.045540307 9.237867622 8.546223631 8.528466926 8.513288444 8.678482766 8.213346908 8.720467975 8.535330093 8.429594737 8.74088584 145216180 tfdA Organic Remediation Aromatics Chlorinated aromatics Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.482941103 8.329456055 8.110939733 8.31256753 8.274812 7.913124867 8.110304553 8.149968917 7.814051902 7.695770975 7.807627134 7.430950066 260427689 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 9.501050375 9.319977445 9.0179529 9.137416915 9.069612667 9.379331698 9.103466792 9.352411182 9.090458704 8.805159335 163746331 CopA Metal Resistance Copper Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 9.19475315 9.310568547 9.034557762 8.472628131 8.434954589 8.896672903 8.838483727 8.765917934 8.808805581 8.843592673 8.533473939 8.908064617 161392403 nhh Organic Remediation Aromatics Nitoaromatics Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 8.400776754 8.17819459 8.513296033 8.108794702 8.26294475 8.381948735 8.271072093 8.260918299 8.510551012 8.338689321 8.192880857 254474283 SMR_antibiotics Antibiotic resistance transporter Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 8.552200095 8.665125336 8.525714335 8.205892884 8.102258478 8.189796333 8.138483286 8.350902218 8.412820607 8.363687906 8.35039715 8.371681103 111615554 ppx Phosphorus Phosphorus utilization Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 9.069144736 9.431063228 9.384056288 8.822876405 8.975155636 9.044061521 9.611857971 8.979439774 9.766348121 8.980038537 8.669816384 8.539001514 55231420 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 8.316004082 8.327677359 8.328454514 8.044161468 8.275024779 8.035542371 8.198956489 8.099182609 8.138480525 7.854423222 7.913248723 7.650249811 224607311 amyA Carbon cycling Carbon degradation Starch Natrialba magadii ATCC 43099 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natrialba;species:Natrialba magadii; 10.16400728 10.27423872 10.16718924 9.326739099 9.63057866 9.628659381 9.451069554 9.925405822 9.432368629 9.495503385 9.649095858 87247613 aoxB Metal Resistance Arsenic Mesorhizobium sp. DM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium; 8.455439841 8.515784459 8.371653078 8.275446288 8.277408135 7.887181826 8.562463368 8.414537113 8.353518028 8.140382728 8.260644911 238717413 pstB Stress Phosphate limitation Yersinia mollaretii ATCC 43969 9.291232648 9.306872976 9.025478524 8.738028937 9.05384059 9.159883554 9.033551648 9.411930117 8.89918408 9.145423244 9.339886462 8.99043814 27356122 4HBH Organic Remediation Aromatics BTEX and related aromatics Bradyrhizobium japonicum USDA 110 8.677619884 8.425790348 7.637864837 8.051317674 8.711575923 7.390040392 8.072143065 7.97434332 8.166018924 255267734 phoB Stress Phosphate limitation Bryantella formatexigens DSM 14469 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;species:Bryantella formatexigens; 9.209290674 9.013642492 8.620646492 8.591688065 8.373367355 8.649735128 9.18210313 8.894550159 9.403583065 8.861921493 8.669577566 8.556860336 33320471 dsrA Sulphur sulfite reductase Desulfovibrio piger superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 9.011936133 9.373423514 9.082373291 8.740947427 9.66462465 9.804853513 9.387258739 9.840474485 9.122948066 9.058291626 9.555848371 71558721 glnA Stress Nitrogen limitation Pseudomonas syringae pv. phaseolicola 1448A 8.222462471 7.950547295 8.537590084 8.204024668 8.086582304 8.354481863 8.463095308 8.493207573 8.193531233 7.906943595 7.87026243 119768086 amyA Carbon cycling Carbon degradation Starch Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 9.575840353 9.369714415 9.493236246 8.744074303 7.830035656 8.581591762 8.462587917 8.177205193 8.410207579 8.623969995 8.666622975 8.848951692 170690923 ArsC Metal Resistance Arsenic Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 7.447314519 6.801464104 7.564815991 7.743057743 7.193545519 8.071420717 7.252035693 7.301660448 7.090385158 27355876 MFS_antibiotic Antibiotic resistance transporter Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.285247911 8.587982274 8.416217614 8.468309959 8.377240708 8.221763862 8.13541622 8.581071567 8.60914256 8.254083411 8.190933131 8.371330332 240145151 pstA Stress Phosphate limitation Roseburia intestinalis L1-82 9.504368664 9.509335347 9.605261151 8.890809827 8.814211184 9.039111777 8.513499187 8.29578288 8.621891279 8.643598357 8.700027418 8.946643591 86571062 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.363546455 8.626758722 8.503867403 8.285530651 8.771379128 8.293555449 8.146993082 8.352718448 8.071669495 8.432478338 8.526820272 8.08007618 118619084 pcc Carbon cycling Carbon fixation Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 8.423517003 8.230415568 8.389902058 8.413319937 8.408703195 8.352930286 8.424945516 8.852780305 8.374887747 8.853285314 8.497976947 8.522377779 91783049 pcc Carbon cycling Carbon fixation Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.533158424 8.610483161 8.155539952 8.426757825 8.176827289 8.534146764 8.818099336 8.544130821 8.29127827 8.227529203 8.481864159 8.147912186 229853624 endochitinase Carbon cycling Carbon degradation Chitin Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 8.955654731 8.6599605 8.752700953 8.619362646 8.435908349 8.309063332 8.36946283 8.14875678 8.574258584 8.486917183 8.413887398 8.331400757 26665349 hao Nitrogen Nitrification Nitrosospira multiformis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira;species:Nitrosospira multiformis; 8.015209596 8.252191622 8.024988222 7.638731642 7.776360718 7.272986896 7.401254278 7.604682254 7.797062977 7.497400022 7.57546379 238488699 ara_fungi Carbon cycling Carbon degradation Hemicellulose Aspergillus flavus NRRL3357 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus flavus; 8.572598054 8.386492353 8.460740679 7.926241819 7.795925975 7.817178073 8.468529301 8.016558699 77543317 arhA Organic Remediation Aromatics Heterocyclic aromatics Sphingomonas sp. HL4 9.111355095 9.066166137 9.130312535 8.771197955 8.709646302 8.822528637 8.899437013 8.697546366 9.036024503 8.878506834 8.902759862 8.850796485 83368632 mer Metal Resistance Mercury Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 8.613392188 8.441113981 8.753841013 8.412185621 8.339629109 8.179654368 8.336119761 8.181478447 8.557178003 8.030451434 8.201308416 8.115126932 56696201 nhh Organic Remediation Aromatics Nitoaromatics Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 9.002275817 8.907761166 9.065663115 8.501287931 8.536530456 8.460982644 8.572047709 8.622262305 8.617257748 8.620053998 8.662066851 8.496704673 118644983 linB Organic Remediation Pesticides related compound Burkholderia ambifaria MC40-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 8.829818997 8.920594437 8.725919797 8.416711949 8.534913909 8.634824996 8.660231596 8.291082358 8.819396844 8.424476444 8.955863383 8.532204511 90418432 MATE_antibiotic Antibiotic resistance transporter Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 8.69040988 8.550592863 8.447738339 7.970705346 8.100486612 7.798084931 8.138000459 7.686718743 8.129520898 7.784623248 7.774079642 8.183775596 116249426 alkJ Organic Remediation Other Hydrocarbons Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.350302642 8.161315098 8.389049085 7.801705334 7.61968067 7.674088761 7.67117236 7.278474806 7.42130951 7.209316568 7.845747621 167583994 ChrA Metal Resistance Chromium Burkholderia ubonensis Bu superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ubonensis; 9.413403424 9.297494916 9.334253996 8.928165284 9.049216088 8.965859601 9.154382018 9.472633916 9.177328155 9.583634929 9.497236973 9.298619317 92118063 ppx Phosphorus Phosphorus utilization Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 10.46813929 10.44633988 10.53474302 9.911677221 9.82437936 10.05782252 10.13946331 9.647445329 10.33300774 9.988618998 10.44014839 10.19396413 251843904 nplT Carbon cycling Carbon degradation Starch Paenibacillus sp. oral taxon 786 str. D14 9.0939269 8.907255844 9.039558519 8.650162852 8.763172559 8.617472235 8.429603112 8.770072966 8.769951526 8.643892297 8.600827112 8.957181777 163262702 pstB Stress Phosphate limitation Bordetella petrii 8.985190625 8.723482344 8.384391857 8.452385731 8.01274002 7.809612828 8.305695003 8.610422665 8.22457215 7.864836553 110082626 narI Stress Oxygen limitation Halomonas halodenitrificans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 8.745099178 8.649390277 8.596547356 8.382539637 8.69642983 8.616944694 8.877595934 8.794726495 8.750952544 8.9717407 9.006454326 8.814783291 67157834 glucoamylase Carbon cycling Carbon degradation Starch Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 8.248880055 8.565974236 8.343798797 7.936041216 8.067883457 7.909061588 7.993991504 8.263054802 8.678846505 8.291818576 8.114879754 8.003515981 109455169 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 9.498336873 9.465598297 9.819530472 8.908043667 8.673077749 8.693905062 8.577707982 8.640943926 8.54554815 8.752104885 8.717802631 8.979274014 182378422 pstB Stress Phosphate limitation Clostridium butyricum 5521 8.077383359 8.448498542 7.194712881 7.359658012 7.087493671 197296831 B_lactamase_C Antibiotic resistance Beta-lactamases uncultured bacterium BLR13 superkingdom:Bacteria; 8.44950131 8.582895701 9.287981436 8.167914308 8.156723589 8.190292769 8.12393129 8.210148347 8.186560718 8.053827471 8.301323894 8.045640829 88934218 ppx Phosphorus Phosphorus utilization Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 9.415148379 9.500806348 9.379671396 9.034798292 8.676164598 8.884106262 8.921579362 8.770652969 9.021529553 8.936664341 9.107424518 9.253682092 77382373 glnA Stress Nitrogen limitation Pseudomonas fluorescens Pf0-1 8.428481758 8.607919475 8.864862902 9.017740688 8.865858504 8.445304517 8.660067212 9.217235505 8.908842757 8.936864835 8.8577025 9.14790766 110168330 chnB Organic Remediation Other Hydrocarbons Trichodesmium erythraeum IMS101 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Trichodesmium;species:Trichodesmium erythraeum; 8.926903738 8.94464538 8.302679966 7.936484507 7.960038052 7.812867419 7.700506822 7.445885799 8.138152871 8.014781541 8.493790514 223485784 AceA Carbon cycling Carbon degradation others Brevundimonas sp. BAL3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas; 8.47356642 8.876861859 8.601359268 8.086505383 8.250225527 8.64827226 9.141184435 8.36146582 9.003320357 8.356706897 8.479341263 8.183476903 160897176 ChrA Metal Resistance Chromium Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.976709378 8.921068265 8.799834901 8.306449405 8.240990461 8.030208595 7.994509486 7.92566335 8.100936749 7.981903731 7.708115893 8.190795237 123983469 AceA Carbon cycling Carbon degradation others Microscilla marina ATCC 23134 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Microscilla;species:Microscilla marina; 8.536834835 8.299812435 8.608763626 7.841662543 7.557116029 7.277169805 7.114680211 7.439678635 7.892169238 7.31054709 7.327855664 7.819691978 146447506 ahpC Stress Oxygen stress Lodderomyces elongisporus NRRL YB-4239 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Lodderomyces;species:Lodderomyces elongisporus; 8.127465358 8.006707238 7.272340397 7.107228316 89335085 phoB Stress Phosphate limitation Desulfitobacterium hafniense Y51 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 9.030697756 9.177806831 8.854725484 8.68251267 8.114974668 8.522469043 8.811804565 8.605362214 8.318061104 8.485390055 89348620 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.531097127 8.592673528 8.267016461 7.955711211 8.231303851 8.177859657 7.914033048 8.090181442 8.259207777 7.970129877 8.198548713 8.102705343 86139125 fnr Stress Oxygen stress Roseobacter sp. MED193 7.377006413 7.655175455 77865826 linB Organic Remediation Pesticides related compound Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 7.406927714 7.52037546 7.669727053 7.095322251 7.457627331 7.387351569 7.408754988 7.127246492 7.673970036 268680475 pstB Stress Phosphate limitation Sulfurospirillum deleyianum DSM 6946 8.589067444 8.334278523 8.737482531 8.069290444 7.976975996 7.884282298 7.44989871 7.616693422 7.799759903 7.504216782 7.509085165 7.889798353 118617205 amyA Carbon cycling Carbon degradation Starch Mycobacterium ulcerans Agy99 7.760236783 8.101414571 7.864657474 7.873166311 7.550156899 8.092606486 7.84944092 7.343694377 7.715029825 159177531 MFS_antibiotic Antibiotic resistance transporter alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 9.037065168 9.347998992 8.900311819 8.846200977 8.427559492 149913806 CODH Carbon cycling Carbon fixation Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.141852704 8.202746223 8.297154123 7.928581171 7.862214252 8.162897942 8.446617142 7.548317013 7.378641568 7.927559775 1183904 APS_AprB Sulphur adenylylsulfate reductase Desulfovibrio vulgaris superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 8.545069273 8.595601438 8.1728469 8.428950242 8.590709471 8.751743457 8.539094059 8.16430461 8.307483113 8.270547913 8.517720643 8.235552945 169765806 nagI Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus oryzae RIB40 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus oryzae; 8.561397862 8.665294333 8.550171849 7.695370018 7.827201964 8.014838549 7.474481627 8.203898102 7.803672849 7.650429904 7.851595666 148512462 iro virulence Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 9.338806617 9.715469532 9.871605342 8.905282773 9.321602293 9.689153837 10.0134572 9.336297971 9.683834451 9.205609452 9.043447208 9.607948889 170741635 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 8.439319923 8.708193877 8.752342376 8.144529953 8.569588871 8.566277676 8.856549865 7.581141377 9.026748975 7.829212346 8.017106856 8.35315142 125997558 iro virulence Shewanella baltica OS155 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 8.473277701 8.465678454 8.598496201 8.299894914 7.766836121 7.995879595 7.706810882 7.332900419 8.229210813 7.52262869 7.970912721 91779181 cbdA Organic Remediation Aromatics Chlorinated aromatics Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 9.749709628 9.61759432 9.811662649 8.917247882 8.816670012 9.064177978 9.759462834 9.236341452 9.850051051 9.204162324 9.187797696 9.371290047 119714316 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.3423926 8.368357027 7.821680734 7.829507573 8.098122469 8.087903252 7.996509089 7.911362909 8.015920194 8.112682893 7.991586399 146188562 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.641834272 8.593086943 8.657874471 7.7675771 7.907637395 8.28502427 8.416979252 7.636145455 7.610883613 7.754319671 7.762463919 126103762 exaA Organic Remediation Chlorinated solvents Rhodobacter sphaeroides ATCC 17029 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 9.072072894 9.435768865 9.326770453 9.775952308 9.700633169 9.163064516 9.674767754 9.657932411 9.488937475 9.379470007 9.145667164 9.224058892 87286321 CopA Metal Resistance Copper Blastopirellula marina DSM 3645 8.530131104 8.483243785 8.601139345 7.827474754 7.979270391 7.878628409 7.844544185 8.282587208 160897727 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.44841087 8.577159706 7.875727545 8.2413882 8.173842216 8.689291195 8.873912398 8.514643392 8.708896386 8.673173093 8.535645616 8.659181818 218533347 SMR_antibiotics Antibiotic resistance transporter Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 8.547791407 8.685773222 8.311483783 8.371957959 8.380493918 8.402565798 8.739780265 8.477148927 8.522548948 8.409403932 8.678573023 8.33113081 119673096 dsrB Sulphur sulfite reductase Pyrobaculum islandicum DSM 4184 8.764687338 9.164353406 8.185435108 8.158715319 8.436931097 8.042480653 8.594948395 8.019434695 8.396469157 8.235797825 88816179 fnr Stress Oxygen stress marine actinobacterium PHSC20C1 8.540181489 8.18817784 8.662022607 8.288191849 8.237676576 8.011345527 7.891060695 7.980134056 8.57991591 7.842277161 7.767639874 8.137988822 220964589 mdlD Organic Remediation Aromatics Other aromatics Caulobacter crescentus NA1000 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 8.468240779 8.355311208 8.471669928 8.418221697 8.472720755 8.442028346 8.459671858 8.559125892 8.404067817 8.466435987 8.581385483 8.42635617 32445505 tftH Organic Remediation Aromatics Chlorinated aromatics Rhodopirellula baltica SH 1 7.411601118 7.465524836 7.958705287 7.755866237 7.810604672 8.018102501 7.606512492 7.61452686 7.700696704 110823901 chnB Organic Remediation Other Hydrocarbons Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.913193057 8.823428566 8.886381229 8.530005687 8.398426787 8.28139223 8.630945242 8.458129761 8.584128623 8.588065934 8.870525328 8.368469322 83814744 linB Organic Remediation Pesticides related compound Salinibacter ruber DSM 13855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 8.512827609 8.214145726 8.625711275 8.370064287 8.500264968 7.89260333 8.62668319 8.096715234 8.149065533 8.476058676 8.046654678 229557227 katE Stress Oxygen stress Listeria grayi DSM 20601 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria grayi; 8.42221117 8.430729315 8.401402016 7.830130917 7.644648322 7.59187135 7.78854905 7.485919635 8.1573879 7.636886201 7.431589227 7.808721552 84503302 linC Organic Remediation Pesticides related compound Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 8.987497121 8.891053372 8.82891389 8.663242337 8.916483361 8.759374712 8.315142099 8.663685653 8.363732966 8.571247592 8.4343129 9.006408148 90420163 TerC Metal Resistance Tellurium Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 8.711460611 8.33247148 8.635942612 8.50778095 8.067549688 8.596806797 8.437002011 8.251628111 8.38478398 8.47592418 8.304264034 117927589 aclB Carbon cycling Carbon fixation Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 7.840686983 7.996824499 8.054992331 7.549445525 8.111510708 7.823476283 7.931015406 7.896587375 7.692762718 217413262 ppx Phosphorus Phosphorus utilization Bifidobacterium gallicum DSM 20093 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 8.679950828 8.747730842 8.542431556 8.356598005 8.161895063 8.36087412 8.285457758 8.152446515 8.159264143 8.544320122 8.518496907 170694248 fnr Stress Oxygen stress Burkholderia graminis C4D1M 8.424591604 8.348120026 8.977221228 8.106621645 7.953701458 7.973003898 8.327469242 7.889120979 8.401857152 7.970101049 8.02736819 8.139437596 94470913 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.475000479 8.379182605 7.621947245 7.519175426 7.857995817 7.793801384 7.493004217 7.559661062 7.574365918 7.672302234 46095836 pheA Organic Remediation Aromatics Other aromatics Ustilago maydis 521 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Ustilaginomycetes;order:Ustilaginales;family:Ustilaginaceae;genus:Ustilago;species:Ustilago maydis; 9.004029044 9.002596753 9.001666358 8.641834231 8.496368824 8.373071947 8.268067265 8.389418442 8.350753086 8.420439536 8.333622156 8.672104748 221157776 catechol_B Organic Remediation Aromatics Other aromatics Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 9.684410282 9.612367147 9.69652148 9.293046226 9.306306097 9.140775203 9.157079248 9.150329062 9.396249191 9.277913499 9.422713905 9.413349543 110632106 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.795141847 8.142948004 8.419491683 8.04173619 8.237344837 7.612436772 8.384280489 7.994940233 8.223506755 8.567988771 7.817343869 241880363 AceB Carbon cycling Carbon degradation others Desulfovibrio vulgaris RCH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 8.531470808 8.738199402 8.347148633 8.75345692 9.054242493 8.854513182 8.635201374 9.218399869 8.628381526 8.90468281 8.916520214 8.871802788 82703538 hrcA Stress Heat shock Nitrosospira multiformis ATCC 25196 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira;species:Nitrosospira multiformis; 11.24684771 10.99065309 11.08741184 9.955031033 10.1729607 9.782538444 76557515 ureC Nitrogen Ammonification Natronomonas pharaonis DSM 2160 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natronomonas;species:Natronomonas pharaonis; 8.839054956 8.89035809 8.752935582 8.34907799 8.484725232 8.570372805 8.915997906 8.405283203 8.845837476 8.468770997 8.48685309 8.435370081 196254686 sigma_70 Stress Sigma factors Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.51077162 8.123185796 8.943082301 8.679013504 8.420689278 7.81583059 8.424840524 8.925699938 8.357293838 8.774319265 8.448130236 8.575667624 209884187 narH Stress Oxygen limitation Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 8.313916414 8.157217402 8.342227746 8.235328584 8.221446102 8.228565258 8.066273807 8.222603325 8.257933117 8.408211554 8.460770866 7.966489657 122878987 hly virulence hemolysin Xanthomonas oryzae pv. oryzae KACC10331 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 9.031887664 8.960761445 8.958959179 8.869250705 8.732348739 8.516217026 8.679267928 8.768407505 8.754722913 8.714923365 8.630724026 8.766496033 87124752 clpC Stress Protein stress Synechococcus sp. RS9917 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.732332059 8.858300209 8.520391752 9.131863557 9.367883863 9.143478236 9.470149415 9.210631423 9.107467739 9.363253054 8.970968965 197104151 narG Nitrogen Denitrification Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 8.832339815 8.744032569 8.264152385 8.54072978 7.975046439 8.317740548 8.248761945 8.051561945 8.404656026 8.253345078 113733318 pbrA Metal Resistance Lead Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.845259087 9.033328131 9.14891668 8.916404222 8.744716107 8.619986518 8.716610848 8.972364289 8.820682719 9.201044121 9.243123497 9.046091286 90422011 MFS_antibiotic Antibiotic resistance transporter Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.629525993 8.641205106 9.392514476 8.39817172 8.416922218 7.951546259 8.210931578 8.629774868 8.722138368 8.605697195 8.478041554 8.582482817 229309978 ahpC Stress Oxygen stress Enterococcus faecalis TX1322 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus faecalis; 8.223214903 8.094637425 7.229012321 7.298549468 6.942137758 6.895879171 7.557838847 7.010830442 7.000186253 7.653780246 15672887 gyrB other category gyrB Lactococcus lactis subsp. lactis Il1403 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Lactococcus;species:Lactococcus lactis; 8.169965047 8.044925453 8.249370477 7.742009294 7.920845667 8.076655758 7.400540118 7.776942873 7.666069051 7.878183789 7.931001656 7.56324775 68007700 amyA Carbon cycling Carbon degradation Starch Exiguobacterium sibiricum 255-15 8.251859657 7.941984996 7.270852967 7.281043748 7.330578314 6.610301237 7.469679562 7.166697895 6.977273845 7.113579641 118168993 narJ Stress Oxygen limitation Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.485723409 8.547647922 8.53571662 8.449949709 8.267883038 8.424289253 8.4787543 8.483455831 8.577275916 8.584211521 8.41635553 8.469820836 106769529 xylA Carbon cycling Carbon degradation Hemicellulose Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 7.774600322 7.631313137 7.597755949 8.038422557 8.244637353 8.092961231 8.173215044 8.06209209 120592900 vdh Carbon cycling Carbon degradation Others Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8.716402505 8.481230962 8.483650418 8.724608703 8.672803452 8.377546887 8.524206223 8.512479756 8.87337572 8.306234447 8.200667304 8.507659037 77917904 silC Metal Resistance Silver Pelobacter carbinolicus DSM 2380 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter carbinolicus; 8.003176704 7.980448021 7.517368888 7.14928899 7.186810249 7.510347013 6.960620789 7.795651973 7.141676888 7.308704264 7.293877224 115374516 ureC Nitrogen Ammonification Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 9.510244386 9.538061731 9.457969501 9.377440518 8.944939066 9.517087507 9.105880465 111018731 nmoA Organic Remediation Aromatics Nitoaromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.788127207 8.913596315 8.978901858 8.790236931 8.56840437 8.584902395 8.620852051 8.58328526 8.501664628 8.753400235 8.617025274 8.614454726 192801344 mannanase Carbon cycling Carbon degradation Hemicellulose Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.229119403 8.37705393 8.235712732 8.517707042 8.562866773 8.420413554 8.291542216 8.752656096 8.334786863 8.897635284 8.694212906 8.732304525 261374836 obgE Stress Radiation stress Geobacillus sp. Y412MC61 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 9.189401837 9.116684222 9.325458918 8.852246635 8.751436427 8.6878023 8.909489998 8.929460472 9.213557916 8.863279457 9.000972641 9.103468344 115390232 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 9.468309382 8.970440139 8.960278893 9.453722584 9.234442379 9.482395672 8.956111067 9.414943488 9.117180923 9.592991227 9.817902173 9.372432985 19909761 gyrB other category gyrB Rhodomicrobium vannielii superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium; 8.508177751 8.699521207 8.515867048 8.152610013 8.245255595 8.480121146 8.219929119 8.497012476 8.525877041 8.321622563 8.556672724 8.332553862 158308820 sigma_70 Stress Sigma factors Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;genus:Acaryochloris;species:Acaryochloris marina; 9.18522883 8.838672494 8.996765653 8.556443963 8.565266007 8.315409042 8.025252002 8.249038378 8.289358815 8.126214807 8.425978676 8.679640484 99036436 mer Metal Resistance Mercury Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8.749633955 8.564132131 8.463625649 8.654524014 8.678906749 8.404801955 8.333755319 8.834789331 8.559181021 8.592564073 8.3797665 163736477 ppx Phosphorus Phosphorus utilization Phaeobacter gallaeciensis BS107 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 10.68538158 10.48707904 10.5559414 9.878889874 9.796189662 10.18137212 10.45790216 9.881628527 10.52147047 10.14806217 10.35534752 10.35040237 255278584 AceB Carbon cycling Carbon degradation others Geobacillus sp. Y4.1MC1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 9.197664015 9.313372408 8.417835203 8.491634768 8.810751195 8.936026029 8.614918269 8.630563479 8.557726773 8.763990286 126617761 pstA Stress Phosphate limitation Cyanothece sp. CCY0110 7.988307695 8.280960365 8.157456814 8.051305221 8.370331659 8.3934204 8.220276737 8.828407671 8.29581783 8.456782906 8.599582932 8.509588193 149123831 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 9.178791839 9.016308069 8.933270507 8.893214745 8.84615199 8.588502442 8.817128333 9.1058042 9.16990459 8.807823413 8.746372445 8.774193544 115372212 cap virulence capsule Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 9.192874808 9.143778966 9.270979937 8.261292452 8.24352912 8.052709187 8.67357196 7.920946778 8.100920096 8.630620343 86610159 sigma_70 Stress Sigma factors Synechococcus sp. JA-2-3B'a(2-13) superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 9.130248401 8.960019701 8.253609958 9.293790473 8.767300129 8.27234212 9.225131413 9.278101613 9.048075004 8.825895081 8.695759058 8.696931135 149917988 pcc Carbon cycling Carbon fixation Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 9.44157472 9.492945311 9.301623806 9.836405427 9.610493394 9.139563684 9.645287801 9.476145055 9.348173355 9.506816864 9.468340926 9.430933216 94554100 pbrA Metal Resistance Lead Deinococcus geothermalis DSM 11300 8.743998457 9.033608256 8.605910662 8.369267245 8.473443764 8.420430769 8.298022945 8.495713186 8.522600652 8.173247217 8.575598152 120323711 sigma_38 Stress Sigma factors Marinobacter aquaeolei VT8 8.13827231 8.021154647 8.098879743 8.009106519 7.980345248 8.059790229 7.915343688 7.976329868 7.70846575 7.808332672 7.653746332 56477495 pimF Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 7.168274422 7.339616184 7.506338613 7.255702668 7.688315066 7.333987557 7.263262987 7.702061787 3261588 ZntA Metal Resistance Zinc Mycobacterium tuberculosis H37Rv superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 9.685854154 9.715334983 9.711818617 9.079652151 9.092540416 9.08742211 8.893574044 8.813461614 8.997848699 9.047606489 9.097902971 9.395199601 108766353 sigma_38 Stress Sigma factors Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 8.644416907 8.300836374 8.533361373 8.290856636 8.429460369 8.462421015 8.631622019 8.468526022 8.524912263 8.479809747 8.758138432 8.33182075 188585609 pstB Stress Phosphate limitation Natranaerobius thermophilus JW/NM-WN-LF 7.932499593 7.733489588 7.413636813 7.432750931 7.24240325 6.923724238 7.104161386 7.540254033 7.395133795 6.933385648 7.462075673 192897610 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 8.416398948 7.959973318 7.976742405 7.887097913 7.757127892 8.247782869 7.859010674 7.982166226 7.40380476 7.709933386 7.757775005 6689448 hao Nitrogen Nitrification unidentified anaerobic bacterium superkingdom:Bacteria; 9.508279876 9.382340737 9.588161411 8.913823431 8.697040072 8.775267422 8.654739128 8.356075697 8.469582924 8.512618993 8.545897705 8.924950873 157912977 Arylest Organic Remediation Aromatics Other aromatics Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 8.80726045 8.781260043 8.697623657 8.302937288 8.216790285 8.234263934 8.427129793 8.118564637 8.525951978 8.384715965 8.327558579 8.235358921 146324709 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 8.587302386 8.323782519 8.755636438 7.853814667 7.802634057 7.795432735 7.715255743 7.321197991 7.630784806 7.683009998 7.930004405 228567232 cellobiase Carbon cycling Carbon degradation Cellulose Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 9.160971929 9.351059499 9.219109947 8.737869181 8.256259598 8.817142064 8.786646618 8.420653209 8.76586749 8.631494886 8.76620377 8.677288946 3157524 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 9.335011667 9.330711986 9.159579014 9.255066881 9.299967595 9.104361108 9.125925502 9.642236742 9.232782809 9.447375958 9.429832586 9.129512455 38427044 narG Nitrogen Denitrification uncultured bacterium 8.740941519 8.744554808 8.894248546 8.767998269 8.774408184 8.608836477 8.721209964 8.979829983 8.715645221 8.929359549 8.940604585 8.837889901 115370210 endochitinase Carbon cycling Carbon degradation Chitin Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 8.401920362 8.436561516 8.754986307 8.003129803 7.91820697 7.925997577 7.220620825 7.222289133 7.980256287 7.850973003 7.656463196 7.96604952 133911164 Catechol Organic Remediation Aromatics Other aromatics Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 8.491686201 8.51507426 8.770557488 8.055406075 8.06211149 8.014629231 8.046392681 7.847280773 8.375890667 8.074345802 7.77493079 8.034084247 91690461 mhpA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 9.943551578 9.823436507 9.588381887 9.177876173 9.647341753 9.66943695 9.988063742 8.997002901 10.12987309 9.243576628 9.493244547 9.244659472 148657617 ara Carbon cycling Carbon degradation Hemicellulose Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 8.473624127 8.273789603 8.581615391 7.806208157 7.554988725 7.708241745 7.198328021 7.240356782 7.711478719 7.695326608 7.691430225 7.902306409 224604871 glnA Stress Nitrogen limitation Natrialba magadii ATCC 43099 8.679084924 8.698428305 8.775023256 8.419500223 8.532709908 8.144006458 7.768444027 7.951268134 8.200743361 8.108321299 8.111379819 8.353650428 152967510 ara Carbon cycling Carbon degradation Hemicellulose Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 8.656489388 8.437213164 8.544159488 8.33608769 8.410458047 8.273778151 8.314960817 8.527348914 8.495837298 8.582418278 8.539674655 8.404867773 108766126 AceA Carbon cycling Carbon degradation others Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 9.642889937 9.571836751 9.692379578 8.949329314 8.877391099 8.920955477 8.900149076 8.840919252 8.915864901 8.941294863 8.928078053 9.160530492 120597258 tutFDG Organic Remediation Aromatics BTEX and related aromatics Shewanella sp. W3-18-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 8.167772705 7.942774405 261286253 cydB Stress Oxygen limitation Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.729673428 8.600076813 8.707485997 8.438729537 8.63462837 8.477353825 8.98239203 8.587338554 8.505922919 8.468767234 8.736179516 8.543620007 121996908 phoB Stress Phosphate limitation Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 9.502109528 9.449717109 9.473677986 8.463049061 9.269929989 9.275310388 9.707934674 8.257515719 9.743346857 8.584429892 8.765731798 8.940120981 217977166 nagG Organic Remediation Aromatics Aromatic carboxylic acid Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 8.519474676 8.703387517 8.44683904 8.580536041 8.4368818 8.091301833 8.630573309 8.578908871 8.218819595 8.258607569 8.098100626 255990144 clpC Stress Protein stress Clostridium thermocellum DSM 2360 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 8.032780257 8.241550226 8.336343885 7.500121678 7.521598057 7.833432742 7.377248251 7.853833519 7.681748773 7.636404112 7.532782601 170134404 linB Organic Remediation Pesticides related compound Burkholderia ambifaria IOP40-10 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 8.101494249 8.30406902 7.88507381 7.865672321 7.58589735 7.330392225 7.785937977 8.037281095 7.894447864 7.626240648 7.674325116 257068382 AceA Carbon cycling Carbon degradation others Brachybacterium faecium DSM 4810 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermabacteraceae;genus:Brachybacterium;species:Brachybacterium faecium; 11.58842001 11.55287153 10.99515698 11.20426895 10.65918454 11.04141208 10.93792793 10.82583306 11.3255263 10.92185992 10.98218776 10.93735121 56675807 dsrA Sulphur sulfite reductase Desulfotomaculum thermobenzoicum superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 8.476851802 8.543845965 8.094440666 8.455160341 8.685773978 8.32380741 8.832344467 8.580279359 8.624631533 9.026416512 8.751273616 254427358 phoB Stress Phosphate limitation Alcanivorax sp. DG881 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 9.300470736 9.564425428 9.38237688 9.089238772 8.87497426 8.965340561 9.268693941 8.937305178 9.001829836 9.069121596 9.336818413 9.253396666 147668755 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. BAV1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 8.274245289 8.493604935 8.637215644 7.763715203 7.591997644 7.682515233 7.947887311 7.563797146 7.93795002 7.530282015 7.773016053 169004216 ara Carbon cycling Carbon degradation Hemicellulose Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 8.288736649 8.266245751 7.75708038 7.87684589 7.923130116 8.056636023 8.012131106 8.202326749 7.987500343 7.557932862 7.787618027 217332983 nplT Carbon cycling Carbon degradation Starch Listeria monocytogenes HCC23 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria monocytogenes; 8.519348615 8.428871128 8.68840716 8.227310481 8.205557596 7.851863389 7.340302908 7.022921324 7.858103283 7.735003385 7.781946144 7.851149464 171058340 pstB Stress Phosphate limitation Leptothrix cholodnii SP-6 8.257986779 8.286651693 8.371977753 8.311937829 8.077475947 8.428362291 8.290560281 8.492346896 8.506137158 8.644823467 8.342413621 255920442 AceB Carbon cycling Carbon degradation others Actinosynnema mirum DSM 43827 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinosynnemataceae;genus:Actinosynnema;species:Actinosynnema mirum; 10.14951398 10.13603551 10.07664124 9.585531476 9.570057735 9.384476095 10.08454135 9.550084522 10.21257241 9.471140363 9.509770428 9.519347972 116099627 ctsR Stress Protein stress Lactobacillus brevis ATCC 367 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus brevis; 8.380969582 8.311035126 8.595853712 8.700238767 8.563047871 8.503287179 8.739916155 8.992907974 8.365824513 8.828551535 8.585545481 8.865308467 83309357 proO Organic Remediation Aromatics Other aromatics Magnetospirillum magneticum AMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 8.45589322 8.136492903 7.952020737 8.108959672 8.035728081 8.212155062 8.595909048 8.154814397 8.638207837 7.973037101 8.111022471 7.955252826 86136004 dehH109 Organic Remediation Chlorinated solvents Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 10.05564849 10.35440451 10.30328011 10.42072173 10.32515243 10.31595553 10.47964277 10.72684202 10.63471536 10.86323756 10.6439104 10.53843092 118619779 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 8.937046604 8.746512138 8.707765574 8.708642905 8.480337749 8.34087407 8.492468339 8.517078355 8.335947542 8.713101249 8.709468744 8.705321395 17428457 pcaG Organic Remediation Aromatics Other aromatics Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 8.498008067 8.368537341 8.448551552 8.545300345 8.60781008 8.273283351 8.306804584 8.652546452 8.45295223 8.36427949 8.333381494 8.58466883 254547599 RNA_dependent__RNA_polymerase Bacteria phage REPLICATION Enterobacteria phage Qbeta family:Leviviridae;genus:Allolevivirus;species:Enterobacteria phage Qbeta sensu lato; 8.83697836 8.901289164 8.71827805 8.586414605 8.545715296 8.584746363 8.439574261 8.678032457 8.537087832 8.830527056 8.706651954 8.623556294 170134549 sigma_38 Stress Sigma factors Burkholderia ambifaria IOP40-10 10.94327351 10.73801706 10.77490303 10.4779804 10.52511993 10.47041386 10.67188678 10.40149499 11.02021056 10.47449067 10.45814721 10.37174831 146195928 atzD Organic Remediation Herbicides related compound Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.153517557 8.542792792 8.408641868 8.117803571 7.790927328 8.603426599 8.867792473 8.324468989 8.81222835 8.177147286 8.093252081 8.345708917 145317688 CusF Metal Resistance Copper Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 8.324809267 8.108378099 8.244961329 8.429657541 8.318982149 8.04143128 8.077026396 7.87231273 8.427816801 7.610742052 8.041554417 7.884905045 94471103 narG Nitrogen Denitrification uncultured bacterium 9.563484707 9.727374965 9.748240921 9.789546075 9.874869439 9.842172187 9.946011312 9.988340948 9.94542459 10.21591966 10.18115433 10.14021979 260575136 proV Stress Osmotic stress Rhodobacter sp. SW2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 9.464235295 9.318698322 9.236120566 8.745586783 8.752857147 8.800014402 9.213906845 8.728809112 9.431213442 8.762242624 8.885203904 9.051398184 120589760 pstA Stress Phosphate limitation Acidovorax citrulli AAC00-1 8.894457749 8.793538311 8.939070673 8.938815088 8.876643556 8.528854536 8.832002654 9.225195552 8.892012418 9.167335954 9.020767794 9.303926668 222055138 linB Organic Remediation Pesticides related compound Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 9.110059782 9.003133035 9.388694715 7.924595478 7.904894797 8.231271343 8.395856121 8.030026901 8.151467598 8.023587035 8.230503212 8.145095004 269211752 obgE Stress Radiation stress Actinomyces sp. oral taxon 848 str. F0332 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 848; 9.105484402 8.928220556 8.744959748 8.929242348 8.745188383 8.728991038 9.086455483 8.974074251 8.992485303 9.184742236 9.10896121 9.055423452 227077709 narH Stress Oxygen limitation Corynebacterium accolens ATCC 49725 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium accolens; 7.448592766 7.840741552 7.638439756 7.291537254 7.979872265 7.393119263 7.533869712 7.366090628 110340113 gyrB other category gyrB Chlorobium ferrooxidans DSM 13031 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium ferrooxidans; 8.468763019 8.465272879 8.367695839 7.441295158 7.533339974 7.749773099 7.884471944 7.352629311 7.585122284 7.33412976 7.672782529 158330628 AceA Carbon cycling Carbon degradation others Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 8.072505385 7.869872897 8.108857106 7.58004699 7.643522336 7.505183954 7.383811153 7.792512537 7.859282833 7.633288081 7.75644572 7.609597779 67920889 clpC Stress Protein stress Crocosphaera watsonii WH 8501 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Crocosphaera;species:Crocosphaera watsonii; 9.728120259 9.495199088 9.873022357 9.235001995 9.667037836 9.350788207 8.705179422 9.022964897 9.334778864 9.444280446 9.369345695 9.398596306 33639370 CopA Metal Resistance Copper Synechococcus sp. WH 8102 8.788518522 8.520213735 8.791636747 8.570253442 8.345266037 8.115199828 8.27907068 8.147725316 8.55900164 8.123569099 8.191706857 8.317469109 118581556 phoB Stress Phosphate limitation Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 8.949747455 9.091322812 9.03165437 9.003708722 9.102454507 9.274242586 9.609460075 9.251655394 9.786523775 9.614618329 9.420134156 118467822 arsB Metal Resistance Arsenic Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.62932133 8.193870138 8.871710731 8.515144175 8.161252421 8.577344089 8.358173943 8.605695055 8.427791199 8.480574653 8.254122909 146408257 nmoA Organic Remediation Aromatics Nitoaromatics Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.447903259 8.038021362 8.298049845 8.026191229 7.749695177 8.006671581 8.010337984 8.011344016 8.099784913 7.899137992 7.583543668 187603789 SMR_antibiotics Antibiotic resistance transporter Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 8.38084291 8.269358419 8.413585901 8.120564847 8.186764746 8.170688343 7.969182593 8.397022503 7.964291986 8.3275249 8.355142134 8.097310018 45386113 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 8.361537344 8.239955666 8.366859828 8.493092671 8.506561514 8.527985201 8.426366426 8.433540883 8.536050579 8.66721689 8.475630443 94554270 pbrA Metal Resistance Lead Deinococcus geothermalis DSM 11300 8.47062593 8.565806903 8.441793135 8.606400439 8.57820836 8.659761422 8.191119612 8.679751994 8.505755862 8.561428364 8.567044291 8.348655734 148559316 AceB Carbon cycling Carbon degradation others Brucella ovis ATCC 25840 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Brucella;species:Brucella ovis; 8.63173932 8.537530025 8.389714659 8.029441132 7.870193033 8.177767698 8.373626851 7.972693577 8.733845663 8.034556456 8.11383439 8.047252762 172072486 AceA Carbon cycling Carbon degradation others Micrococcus luteus NCTC 2665 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus;species:Micrococcus luteus; 9.579045487 9.066027608 9.747691583 10.20116179 10.36400889 10.25979402 9.679833002 10.23903491 9.445344708 10.03199264 9.952722765 10.58966811 189346339 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Chlorobium limicola DSM 245 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium limicola; 9.358984796 9.379366701 9.552438011 8.714367514 8.650662624 8.6138153 8.507409524 8.507744264 8.391113767 8.459639158 8.571478911 8.962505333 144770 endoglucanase Carbon cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 8.231139398 8.560314813 8.255980096 7.56538186 8.066927115 8.474662411 8.159078465 8.164789042 8.431370357 8.058703193 8.39695363 7.971365126 220914954 fnr Stress Oxygen stress Methylobacterium nodulans ORS 2060 8.72403953 8.655745809 8.834221106 8.800116152 8.718446509 8.59673973 8.757242974 8.690853393 8.676678425 8.668200516 8.549485057 8.395171102 29424892 single_strand_annealing_protein Bacteria phage REPLICATION Mycobacterium phage Che9c order:Caudovirales;family:Siphoviridae; 9.171864003 9.066704506 9.086541409 8.833532848 8.852386424 8.796576066 9.077486185 8.907785575 9.213297139 8.783573203 8.725724471 8.712529421 82793122 holin_type_2 Bacteria phage LYSIS Vibriophage VP4 order:Caudovirales;family:Podoviridae;genus:T7-like viruses; 8.54290928 8.67778384 8.235592455 7.975097251 7.865097664 8.066021433 7.574610882 7.366840171 7.617135726 66850759 nmoA Organic Remediation Aromatics Nitoaromatics Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 7.982232939 8.398856334 7.680057998 7.898645849 8.063757109 7.568230835 7.917986848 7.743854229 8.141978233 8.196940727 7.517446081 163811759 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 8.223998561 8.132137558 8.081955712 7.927755378 7.550820762 7.822218808 8.342203788 8.222722494 8.28968485 8.12912246 8.399612201 74316583 sox Sulphur Sulphur oxidation Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 8.132813843 8.111719619 7.384146898 7.317829304 7.330251583 6.787358497 7.642609543 7.318748365 7.340360402 256359618 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 8.421068792 8.540016276 8.676238159 8.686021608 8.433927837 8.122595207 8.344344055 8.577260227 8.649079089 8.412335051 8.456140702 8.565307136 167646695 tfdA Organic Remediation Aromatics Chlorinated aromatics Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.571327381 8.674042356 8.76650898 8.764679003 8.77153699 8.612565257 8.758929333 9.147303739 8.832248486 9.034323072 8.527507677 8.866148089 241895538 obgE Stress Radiation stress Weissella paramesenteroides ATCC 33313 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Weissella;species:Weissella paramesenteroides; 8.726040621 8.016171348 8.236204495 8.445221259 8.351377081 8.26750675 8.149239749 8.240760911 7.828269561 7.91229031 8.193354038 7.749237763 71909130 ahpF Stress Oxygen stress Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 8.875563351 8.777183904 8.756032815 8.573550528 8.250428946 8.558971571 8.630595381 8.566563358 8.507943643 8.376060318 8.266927716 8.465023554 256582665 grpE Stress Heat shock Cryptobacterium curtum DSM 15641 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Cryptobacterium;species:Cryptobacterium curtum; 9.392821888 9.382576807 9.454359919 8.337072112 8.385067521 8.864425915 9.229178035 8.837009361 8.525592027 114767349 mer Metal Resistance Mercury Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.264706904 8.365066273 8.539999376 8.208431429 8.165590528 8.086150866 8.315959668 8.150465007 8.10393639 8.225228067 7.958062388 7.936367974 39936323 CadA Metal Resistance Cadmium Rhodopseudomonas palustris CGA009 8.029699578 8.376991719 8.244127062 7.4668901 7.782944779 8.214164524 8.264529747 8.03773994 8.509811907 8.376949004 8.356449666 8.482560482 192286755 nitA Organic Remediation Aromatics Other aromatics Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.391231201 8.077092009 8.409073947 8.227237316 7.758602238 7.804397335 8.184413147 8.194013627 8.174431694 8.165678567 7.957312823 7.998681172 158449904 bphF1 Organic Remediation Aromatics Polycyclic aromatics Coprococcus eutactus ATCC 27759 8.830889827 9.27269792 8.214223503 8.098174014 8.125164929 8.067950835 7.69559434 8.117130879 7.989667229 7.994076197 8.139195337 77954443 AmiE Organic Remediation Aromatics Other aromatics Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 9.933723901 10.42196083 10.13838934 9.863717442 9.269445347 10.32523004 10.72848591 10.1414243 10.65185803 10.03061389 10.21168365 10.03945915 116691654 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia cenocepacia HI2424 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 8.950036855 8.674359995 8.870093352 8.587907045 8.41975375 8.24484991 8.361031729 8.869424788 8.34704838 8.579285743 8.505964023 8.532873637 255036187 amyA Carbon cycling Carbon degradation Starch Dyadobacter fermentans DSM 18053 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 8.016734456 8.031113262 8.02665612 7.602812139 7.492117607 7.684658731 7.609750542 7.380476141 7.815900282 7.233189315 7.06784944 7.067407478 144945410 ChrA Metal Resistance Chromium Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 8.978610489 8.505888422 7.880804441 8.687865708 8.715508355 8.705347351 8.369662679 8.515193068 8.177447592 169761481 iro virulence Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 9.023890053 8.978084647 9.223577068 8.634415015 8.711620351 8.291848828 8.615405251 8.237475036 8.718756344 8.721615414 8.399033454 171465252 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.46916073 8.199660119 8.279921464 7.875401119 8.034602002 8.121179473 8.241654037 8.404533074 7.922195466 8.854308108 8.814521146 8.486997283 194540593 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.797966193 8.792222828 8.842552635 8.35584582 8.163464777 8.104865112 8.021619947 7.935258399 8.183099558 7.959523455 7.963014842 8.311391037 119535732 nahA Organic Remediation Aromatics Polycyclic aromatics Nocardioides sp. JS614 8.804074164 8.578555491 8.586340668 8.908055711 9.105515473 8.402280285 8.752123605 126387645 ChrA Metal Resistance Chromium Acinetobacter baumannii ATCC 17978 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 8.325010245 8.302160917 8.434161444 7.293238226 7.26793806 7.627513264 7.44035891 6.922560776 7.816747141 7.318535078 7.256871933 7.560246253 112464119 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.655651059 8.595314049 8.845750082 8.430509714 8.293782298 7.871414257 8.578910606 8.22421503 8.008624449 8.777257609 220933976 pilin virulence pilin Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 8.250066766 8.317102206 7.422919151 7.649490372 7.622136727 7.978929546 7.17572555 7.876680896 7.029674826 7.332144671 7.550489929 14906681 groEL Stress Heat shock Anaplasma platys superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales;family:Anaplasmataceae;genus:Anaplasma; 8.739279939 8.819660902 8.355110759 7.843061381 7.918408561 7.830313293 7.805361629 7.819261233 7.72861763 16330349 sigma_70 Stress Sigma factors Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 8.933590293 8.784233837 8.960263015 8.233883713 8.357546007 8.365758599 8.099360017 8.448786071 8.148276324 8.353484362 8.538847497 8.724937535 15076650 merB Metal Resistance Mercury Bacillus cereus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 8.703516867 8.821855454 8.796234242 8.219502012 7.902214468 8.078195217 7.96680844 7.79144116 8.449250777 8.038233158 7.836896445 8.240752916 145702999 pimF Organic Remediation Aromatics Aromatic carboxylic acid Metallosphaera sedula DSM 5348 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Metallosphaera;species:Metallosphaera sedula; 7.117405863 7.30568195 7.630131386 88791363 ppx Phosphorus Phosphorus utilization Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 8.015561677 8.02002222 8.368949983 7.569037693 7.526901419 7.583374566 7.428106136 7.298784758 7.565223326 7.329676144 7.769516944 7.603488036 264680502 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.122744201 8.106240339 7.965276486 8.155325378 8.321101938 8.109324641 8.286664457 8.127751809 8.375239509 8.585393756 8.260467936 86157704 cytochrome Energy process Energy process Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 8.657169194 8.58935991 8.726943668 8.327107442 8.342390538 7.905901858 8.169555457 8.091886455 8.180002548 8.142688866 8.277277453 8.188606394 197790853 ArsC Metal Resistance Arsenic Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 8.160275722 8.077773806 8.179991859 8.162534392 7.934874678 7.94586595 7.598489482 8.256207318 7.990075961 8.01961497 8.164745076 7.668114687 154492924 tutFDG Organic Remediation Aromatics BTEX and related aromatics Parabacteroides merdae ATCC 43184 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides merdae; 8.562937687 8.474721768 7.803787597 9.037087059 9.118790904 8.963256059 8.724112216 8.368115322 8.676488734 171060823 TerC Metal Resistance Tellurium Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 8.723088898 8.770865395 8.302608082 8.905079223 8.729824294 8.537367137 8.837304176 8.698992354 8.58651133 8.526653085 8.223107118 8.309321731 171319162 MFS_antibiotic Antibiotic resistance transporter Burkholderia ambifaria MEX-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 9.656926694 9.711310377 9.628667289 8.954978175 8.930613351 8.755399933 9.106490421 8.949232005 9.149564044 8.917593303 8.934578651 9.021151449 118660610 HBH Organic Remediation Aromatics BTEX and related aromatics Burkholderia multivorans ATCC 17616 9.127044107 8.798298565 8.645050008 8.58668019 8.532220941 8.699361015 8.928146438 8.736938902 9.1294482 8.618247121 8.577610395 8.549127797 187724227 sigma_32 Stress Sigma factors Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 9.176748532 9.520550772 9.695970898 9.183904286 9.082414801 8.921446907 9.24490991 9.751484301 9.392887459 9.790206011 9.360613146 9.621394014 119898807 nahA Organic Remediation Aromatics Polycyclic aromatics Azoarcus sp. BH72 8.459145079 8.342261982 8.383953675 8.309583942 8.037555567 8.11249734 8.443153514 7.886395736 8.308669232 7.989372378 8.027557024 7.94896323 83631701 phoB Stress Phosphate limitation Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 8.918741133 8.638808815 8.46022558 8.27756033 8.260669916 8.382876063 8.012648263 8.207680849 8.403615094 8.28639762 8.418306744 8.155783066 126740618 PobA Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. SK209-2-6 9.069253844 8.858317021 8.729732231 8.380793437 8.559547185 8.368258357 8.245311193 8.961322586 8.410712512 8.807139815 8.656134182 8.768019215 157704432 bphA Organic Remediation Aromatics Polycyclic aromatics Sphingomonas sp. LB126 8.396198072 8.497437017 7.981558535 7.751268636 7.449523016 7.661849711 7.657887355 7.926698014 7.832090852 7.616182854 7.940250216 168990714 AceB Carbon cycling Carbon degradation others Lysinibacillus sphaericus C3-41 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Lysinibacillus;species:Lysinibacillus sphaericus; 7.802858389 7.626943073 7.397940963 7.067386395 7.005074628 7.404515536 7.474824358 7.410001496 170937805 phdCI Organic Remediation Aromatics Polycyclic aromatics Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 8.371003698 8.66724432 8.492906038 8.857529003 9.142751053 8.751375385 9.098068527 8.779162627 8.796652892 8.800381468 8.386632 148545400 cytochrome Energy process Energy process Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.525310586 8.314888861 8.504602812 8.232119378 8.402011117 8.264267784 7.926797072 8.362494792 8.353092624 8.245052595 8.295366275 8.446107619 14717376 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Azotobacter vinelandii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter; 8.733013122 9.073411657 8.880019563 8.991491478 8.805441487 8.368951579 9.015824532 9.022724518 8.850915303 8.877184353 8.776764662 8.586999006 194291091 sox Sulphur Sulphur oxidation Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 7.988923827 8.086511427 7.499388831 8.009472462 7.385845529 7.53074146 7.763771532 8.081714237 7.644046666 7.428176578 7.743584268 198268949 Arylest Organic Remediation Aromatics Other aromatics Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 8.599200181 8.498738657 8.684660354 8.469366642 8.030065579 8.026597 7.810894746 8.074314673 8.60219337 8.137898711 7.963942032 8.27757957 6630979 RNA_dependent__RNA_polymerase Bacteria phage REPLICATION Enterobacteria phage M12 family:Leviviridae;genus:Levivirus;species:Enterobacteria phage MS2; 7.953972833 8.211750919 7.257000417 7.050017359 7.231330723 6.826679247 7.623976124 6.928378321 6.99278412 148555962 nahA Organic Remediation Aromatics Polycyclic aromatics Sphingomonas wittichii RW1 8.744705163 8.704951135 8.718401174 8.30126281 8.238970092 8.087464677 8.048564626 8.119188983 8.213786029 8.101602753 7.950376606 8.154806978 27381154 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.630612118 8.078276948 8.401443682 8.493211925 8.464419146 8.278728337 8.38864629 8.42821305 8.524977399 8.49377567 8.518272074 8.151121606 119391455 narG Nitrogen Denitrification uncultured bacterium 8.539378711 8.486607279 8.640261954 8.188191031 8.239233856 8.070744897 8.224839362 8.255012568 8.622786462 8.314229617 8.131993595 8.282469174 47573625 rubisco Carbon cycling Carbon fixation Rubrivivax gelatinosus PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 8.383030366 8.201496254 8.993602627 8.695983051 8.68488314 8.476452423 8.561231945 8.538895955 8.615040659 8.4938375 8.032188149 116695363 pcpA Organic Remediation Aromatics Chlorinated aromatics Ralstonia eutropha H16 8.850070297 8.831316504 8.838154697 8.431869398 8.002466701 8.375509657 8.549210127 8.476313836 8.250440395 8.599453033 8.579293225 8.703632304 126730095 grpE Stress Heat shock Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 8.148176133 8.4332456 8.413576746 8.770395043 8.75665461 8.533324161 8.975510568 8.832914177 8.517362701 8.659929828 8.449245521 8.411855874 159892576 CadA Metal Resistance Cadmium Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 8.556088344 8.563764591 8.780864346 7.577246263 7.760197464 7.95912064 8.06517881 7.599592566 8.520384678 7.453950037 7.52233987 7.998089833 119669794 sigma_38 Stress Sigma factors Azoarcus sp. BH72 8.722394602 9.06768362 8.917126407 8.00997006 8.229471723 8.52764837 8.473327187 8.130784983 8.303712025 8.392949344 8.374383629 8.724028866 90336762 katE Stress Oxygen stress Aurantimonas manganoxydans SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 8.787898362 8.850792511 9.032347413 8.691722345 8.566699596 8.335495905 8.872178887 8.789192581 8.590335409 8.865483703 9.172393825 8.578513232 186470605 fnr Stress Oxygen stress Burkholderia phymatum STM815 8.906437784 9.066335873 9.010409394 8.664197354 8.656060939 8.679149384 8.999735817 8.746699025 9.051090751 8.824988187 8.890304178 8.707991271 227964844 hly virulence hemolysin Tsukamurella paurometabola DSM 20162 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 8.553442013 8.487582116 8.162850465 8.56921477 8.282537257 8.306316293 8.945572565 8.509506397 8.686390172 8.6128256 8.409106343 6759582 NiR Nitrogen Assimilatory N reduction Streptomyces coelicolor A3(2) 10.13208168 10.11652803 10.19316422 9.665277141 9.680051949 9.595974699 9.189729329 9.436739842 9.290941314 9.32856979 9.489751198 9.662685054 219563170 nahA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 8.572179663 8.397903895 8.745412913 8.754008484 8.718831603 8.66350974 8.615118334 8.809956842 167033539 nmoA Organic Remediation Aromatics Nitoaromatics Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 9.056148756 8.667680359 8.766357876 8.207835381 8.310989282 8.565183549 7.705651455 8.025553826 8.288850212 8.302796398 1857716 katE Stress Oxygen stress Aspergillus fumigatus superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 8.828501246 8.408403531 8.314882828 8.401934227 8.322158633 7.891246487 8.462740952 8.075356756 8.320932695 8.386288804 8.449563037 78358251 cytochrome Energy process Energy process Desulfovibrio desulfuricans G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 9.768039494 9.727824086 9.643976912 8.666901417 8.799742306 8.71916965 8.95092736 8.289770574 8.864413682 8.873611933 9.09882389 9.140217488 14024664 AceB Carbon cycling Carbon degradation others Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 8.829206579 8.395171041 8.147585015 8.374288553 8.025992166 7.842013392 8.252213735 8.183969702 8.366262789 8.174555931 8.181766382 7.812946943 116743257 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9.076144421 8.844728947 9.132747055 8.284516954 8.256132733 8.221543774 8.197400992 8.287489108 8.293924933 8.323376964 8.220095557 8.486824454 111919316 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.497927576 8.339271599 8.312354907 7.801531972 8.186403581 8.327315448 8.430946759 8.094436058 8.481117593 7.937894743 7.974737683 7.670441413 126348097 TerD Metal Resistance Tellurium Streptomyces ambofaciens ATCC 23877 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ambofaciens; 9.497051454 9.527837138 9.535937381 9.024152064 8.998149752 8.907484829 8.761807164 8.917184782 8.900190402 8.941432322 8.949468349 9.181522309 119353652 ArsC Metal Resistance Arsenic Chlorobium phaeobacteroides DSM 266 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 8.726309718 8.905532129 8.782611944 8.124806803 7.755843712 8.428121967 8.438074055 7.881392313 8.385404433 8.202312761 8.314044782 8.132731055 30269561 nasA Nitrogen Assimilatory N reduction uncultured bacterium superkingdom:Bacteria; 8.697865052 8.670304244 8.813949884 8.916797956 8.970668218 8.82343632 9.381314088 8.922065463 9.373493341 9.11274296 9.334458978 163867452 obgE Stress Radiation stress Bartonella tribocorum CIP 105476 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella tribocorum; 9.467534356 9.379372413 9.629486779 8.966494107 8.896008799 8.771972895 8.789785625 8.875192117 8.877778146 8.796063493 8.741133332 8.986985653 221735864 nagG Organic Remediation Aromatics Aromatic carboxylic acid Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 9.087287657 8.90894919 9.004523327 8.542003126 8.405892094 8.455151391 8.805177466 8.386219904 8.814332841 8.436496711 8.630832283 8.762354858 46121369 nagG Organic Remediation Aromatics Aromatic carboxylic acid Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 8.887503386 9.128200296 9.320624103 8.259256803 7.895122701 8.155469173 7.667218675 7.595583584 8.008150163 8.135625861 8.596694978 167348716 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.00727386 8.128950364 7.609660511 8.275135872 8.229557066 7.953226987 8.308512845 8.102609624 8.097039516 8.244294953 196198112 endoglucanase Carbon cycling Carbon degradation Cellulose Clostridium thermocellum DSM 4150 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 9.176466784 9.203689538 9.28259706 8.344347987 8.329738166 8.328004234 8.450918625 8.159883356 8.521480742 8.255951001 8.360302161 8.660139046 154253091 SMR_antibiotics Antibiotic resistance transporter Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 8.964467123 8.793256389 8.989081151 8.598856848 8.588112456 8.607367535 8.956215864 8.488558232 8.79298733 8.548185266 8.529002033 8.67834648 161785006 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 8.795638035 9.134289965 8.949072398 8.186425513 8.822232348 9.026614881 9.356932043 8.620378592 9.408369273 8.692416918 8.717862716 8.674737252 110679886 obgE Stress Radiation stress Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 8.810604415 8.76724657 8.970098006 8.456544341 8.371834768 8.268835428 7.985660986 7.781095189 8.518634505 8.056102998 7.932667914 8.308971683 62512297 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9.607815484 9.650173546 9.492160181 9.222714542 9.514956506 9.852977921 10.03773232 9.542318303 9.928481786 9.501281544 9.306714833 9.359297233 26278668 narG Nitrogen Denitrification uncultured bacterium 9.215593821 9.287737341 9.245116331 9.173792604 9.091916668 8.745946844 8.717180336 8.95442787 8.485332348 8.737612239 8.821818689 9.096893044 146409274 SMR_antibiotics Antibiotic resistance transporter Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 9.451006694 9.285514909 9.505242997 8.630425605 9.163749562 9.210084179 9.532057346 8.39257631 9.536036011 8.946847777 8.990357884 9.007524727 134296777 pilin virulence pilin Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 8.298167486 8.203892934 8.27382658 7.5660295 7.460423734 7.45229466 7.259210181 7.461854848 7.979954916 7.68832602 7.483651934 7.64330183 13422557 linB Organic Remediation Pesticides related compound Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 8.33149577 8.351514763 8.233350466 8.586092033 8.623195685 8.216712894 8.32693391 8.074787234 8.065610802 7.798563568 29654887 sigma_70 Stress Sigma factors Coxiella burnetii RSA 493 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Coxiellaceae;genus:Coxiella;species:Coxiella burnetii; 8.258385746 8.257576468 8.334295649 7.74705012 7.930491555 8.131509563 8.062862907 8.070677224 8.066102976 8.259635681 8.172364043 8.314425969 139478553 mer Metal Resistance Mercury uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 8.566476407 8.566810415 8.438356567 8.608738559 8.578482773 8.6206184 8.830371839 8.676412719 8.76944902 8.752999385 9.018550293 8.736802475 89899153 PobA Organic Remediation Aromatics Aromatic carboxylic acid Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 8.325947538 7.77278447 8.198139522 8.015872258 8.200905853 7.594166622 7.918447991 8.157760605 8.003646751 8.196628018 7.859084188 83017284 gyrB other category gyrB Microbulbifer sp. MBIC06494 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Microbulbifer; 7.270561508 7.747517654 7.217701877 6.985512097 171779940 obgE Stress Radiation stress Streptococcus infantarius subsp. infantarius ATCC BAA-102 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus infantarius; 7.333102231 6.918624282 7.281341015 6.981150372 6.895342816 196191270 pstB Stress Phosphate limitation Synechococcus sp. PCC 7335 8.069977228 7.818179793 7.183478935 7.290452992 6.950211093 6.649530328 7.290979497 7.21458598 7.228714257 7.457907343 186471992 pstS Stress Phosphate limitation Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 9.554002668 9.475834091 9.426161451 9.041327835 8.635185313 9.057241958 9.006423227 8.902425477 8.897916771 8.758237311 8.724480865 8.858711811 242224962 ctsR Stress Protein stress Clostridium cellulovorans 743B superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium cellulovorans; 8.963755074 8.97442155 9.141529763 8.687578238 8.506036488 8.365303829 8.054021876 8.192407283 8.304747376 8.224032389 8.487650848 148645204 nrfA Nitrogen Dissimilatory N reduction uncultured Geobacter sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.433078496 8.227540229 8.052510274 7.883941566 7.770544043 7.596919237 7.549012831 7.406691933 7.64445172 7.561937819 7.890359935 114321506 phtA Organic Remediation Aromatics Aromatic carboxylic acid Alkalilimnicola ehrlichei MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 8.786216526 8.527415731 8.466250608 8.576602365 8.616835206 8.510832992 8.153354228 8.616788188 8.264440489 8.496511305 8.248055931 8.641404619 209401612 narG Nitrogen Denitrification uncultured bacterium 9.083046148 9.257338616 9.190433492 8.210004674 8.329665961 8.581600369 8.05851463 8.924271073 8.198768562 8.977544929 163735387 vanA Carbon cycling Carbon degradation Others Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 8.122228726 8.007446637 8.26841394 7.858493599 7.98338297 7.97670084 7.88046495 7.987102931 8.051850947 7.916018259 7.696074301 7.665387043 226089127 MFS_antibiotic Antibiotic resistance transporter Gemmatimonas aurantiaca T-27 superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 8.022552023 8.333677993 8.268445696 7.559047688 7.524794684 7.734610617 7.331137636 6.962975036 7.704863369 7.707486271 7.470168799 7.569606884 113946682 TerC Metal Resistance Tellurium Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 9.001361559 9.159435112 9.242783132 8.518426048 8.235154588 8.471266697 8.656223919 8.248875899 8.379383355 8.270670529 8.541109678 218779817 alkH Organic Remediation Other Hydrocarbons Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 9.077299526 9.237260857 8.95975441 8.603918076 8.592942815 8.956498454 9.063765339 8.894487088 9.087786391 9.127518379 9.01503153 9.116341873 255322395 sigma_70 Stress Sigma factors Campylobacter showae RM3277 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter showae; 8.459345876 8.570737592 8.40296609 7.841961887 7.679141083 8.12970821 152995022 nagG Organic Remediation Aromatics Aromatic carboxylic acid Marinomonas sp. MWYL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 8.483790471 8.114127357 8.411344906 8.455219907 8.152298402 8.351026553 8.419668177 8.416129052 8.473318905 8.192168957 8.181353613 133919284 B_lactamase_A Antibiotic resistance Beta-lactamases Leminorella richardii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Leminorella; 8.959964154 8.873650165 9.315995902 8.217213034 7.93139452 7.968543961 7.867460009 8.467227507 8.475629617 8.488153978 91786891 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 8.577003116 8.489751178 8.778770813 8.141885399 8.306696431 8.601864442 8.803579597 8.258763916 8.874602509 8.415196923 8.470692643 8.35083139 85835511 aoxB Metal Resistance Arsenic Vibrio sp. MED222 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 11.21057738 10.98428196 11.18394373 10.56358365 10.59226377 10.5140572 10.56126128 10.074027 10.81921677 10.60375371 10.79627409 10.64371775 148556953 MFS_antibiotic Antibiotic resistance transporter Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 9.131692971 9.09191626 8.928907762 8.758269512 8.905826919 8.930122283 9.216107274 8.592863625 9.177149776 8.797414809 8.705209233 8.841039475 56799003 catechol_B Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 8.39837889 8.608172465 8.358814523 8.990008349 8.3324749 8.407255403 8.766743325 8.770976024 8.480156764 8.670876888 8.603930295 8.45666815 163858335 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 8.347630808 8.078570323 8.19615669 8.007076208 7.944000546 7.893586204 8.040326865 8.044757462 8.046085705 7.930582788 8.016971086 7.911589556 118682316 nrfA Nitrogen Dissimilatory N reduction Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 8.699649483 8.543576196 8.711759768 7.779185584 8.0573044 7.87033801 7.932297087 7.201119159 8.219712783 7.672258768 7.616851054 7.92673724 83723753 xylXY Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia solanacearum UW551 10.3321851 9.974231842 10.12874687 9.86078224 9.791109072 9.969199769 10.11900998 9.98721472 10.12393569 10.05185477 10.18521103 146283885 katE Stress Oxygen stress Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 8.437312206 8.954794655 8.320632907 8.307205156 8.838274376 8.886189436 9.132972486 8.708843007 8.342296143 8.621965164 8.221355231 206687179 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.900497337 8.191814171 8.0501837 8.331020086 8.267520015 8.219368868 8.109107353 8.415269945 8.312413895 8.323576529 8.149298604 8.212094996 198263181 atzA Organic Remediation Herbicides related compound gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.907726159 7.909638734 7.973607446 7.378444714 7.931290366 7.614574865 7.98527789 7.956331549 118173803 nahA Organic Remediation Aromatics Polycyclic aromatics Mycobacterium smegmatis str. MC2 155 8.196982426 8.145567427 7.472017108 7.444843022 7.408948179 7.133313855 7.250607618 7.800952897 7.610972101 7.401225913 7.410318004 121712467 BpH Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 8.438679571 8.224240071 8.597819108 7.750370545 7.772267068 7.584473024 7.47144239 7.230122509 7.580321743 7.409426152 7.345311949 7.529998384 270283843 sigma_70 Stress Sigma factors Bifidobacterium gallicum DSM 20093 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 9.350284338 9.526183111 9.495664047 9.800538535 9.653755219 9.382907343 9.930945591 9.805179585 9.566684569 9.923039302 9.7487305 9.481531526 84705196 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Parvularcula bermudensis HTCC2503 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 8.482565159 8.795969861 8.302035376 8.689780651 8.692338986 8.476701643 8.94450631 8.907537691 8.55655307 8.790899063 8.8719934 8.344657292 106767327 xylA Carbon cycling Carbon degradation Hemicellulose Clostridium phytofermentans ISDg superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium phytofermentans; 8.879522595 8.782483776 9.482127633 8.131472187 8.350273793 7.820607547 7.802199084 8.233124158 8.026836735 8.293605143 8.257110703 8.178393439 84043039 pcaG Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 8.195872506 8.017241324 8.143277964 8.328204223 8.448736175 8.275966266 8.228725934 8.664595342 8.439184369 8.55659804 8.440848007 8.335218916 118471275 nmoA Organic Remediation Aromatics Nitoaromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 7.283798597 7.790103342 7.746481366 7.73347798 8.094320321 7.970161576 7.901357568 7.969314014 7.836642537 94972049 CadA Metal Resistance Cadmium Deinococcus geothermalis DSM 11300 8.223363201 8.009907132 7.901848796 7.750092928 7.584066256 7.546579649 7.883942762 7.632869857 7.272453039 7.496122575 127512629 pstB Stress Phosphate limitation Shewanella loihica PV-4 9.073445492 8.382526679 8.684241631 8.682189355 7.929307424 7.835183171 8.419362263 8.425802577 8.024907546 8.031865074 7.788131868 206576326 NirB Nitrogen Assimilatory N reduction Klebsiella pneumoniae 342 8.96567292 8.981950918 9.084139023 9.070597009 8.701467078 8.668886935 8.408431655 8.520759102 8.506998055 8.436097552 8.66181077 8.766043192 154246475 hrcA Stress Heat shock Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 9.540915942 9.701561983 9.816725069 9.602552617 9.470833028 9.033929472 9.467211825 9.846068729 9.719863654 9.67371362 9.529856793 9.831910597 4468700 TerD Metal Resistance Tellurium Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 11.17832886 10.9472303 11.04279914 10.45846165 10.42609167 10.19503135 10.27483489 10.1261551 10.88541592 10.70096168 10.74118392 10.56529986 39647585 bclA Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.967451168 8.924513685 8.789176078 9.167666052 9.237119482 9.037244483 9.036461529 9.453203882 8.994385703 9.209974081 9.167875317 9.179795601 126636243 trzN Organic Remediation Herbicides related compound Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 8.738153796 8.896547377 8.575968583 8.234163455 8.486637989 8.559825591 8.32918398 8.587006036 8.257169671 8.591609188 8.845229396 8.665888116 118434457 HBH Organic Remediation Aromatics BTEX and related aromatics Stappia aggregata IAM 12614 7.572519026 7.294098488 6.964672883 7.507888204 7.645232823 7.323272202 7.446203128 7.305251482 66351663 nhh Organic Remediation Aromatics Nitoaromatics Agrobacterium tumefaciens superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 9.407975313 9.408417202 9.485306526 8.537827856 8.445076932 8.561141182 8.55345582 8.16336952 8.71618809 8.390041946 8.297001159 8.677983102 56798873 catechol_B Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 8.16973036 8.017575398 8.369858486 8.136605006 7.90397614 7.68913189 7.534864472 7.812669747 7.925745745 7.793757559 7.598383368 7.807209964 217968619 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 9.867137497 10.03911704 9.855412537 9.525718349 9.179190126 9.571521271 9.631256914 9.350567973 9.553370397 9.253014655 9.326291895 9.535732394 222056817 cytochrome Energy process Energy process Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 9.331569496 9.209034981 9.321525025 8.896224615 8.82817312 8.695665776 8.523361124 8.429741064 8.610114961 8.494798305 8.820577562 194307774 silC Metal Resistance Silver Pelodictyon phaeoclathratiforme BU-1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 8.628636461 8.014966289 8.342634311 8.340034416 8.161058067 8.258594234 8.071572069 8.145239419 8.226978302 8.207069106 7.984649805 90418134 fnr Stress Oxygen stress Aurantimonas manganoxydans SI85-9A1 9.723106844 9.606323862 9.504745333 9.265929893 9.017405895 8.880945868 9.144741298 8.621304534 9.444811953 9.006357609 8.911726237 8.848266942 84386977 dmsA Organic Remediation Others Vibrio splendidus 12B01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 8.610936567 8.491943257 8.492720066 7.942482079 7.665993723 7.585455272 7.603132831 8.443191288 7.45503967 7.785176373 7.997478581 126032010 PhaB Organic Remediation Aromatics Aromatic carboxylic acid uncultured bacterium superkingdom:Bacteria; 8.661655168 8.505549692 8.662286629 8.428639124 8.112201433 8.036522976 8.087756186 8.276705104 8.411287377 8.165129787 8.182335746 8.398678588 167563426 alkB Organic Remediation Other Hydrocarbons Burkholderia oklahomensis EO147 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia oklahomensis; 8.418300862 8.139891114 8.281829318 7.8937652 8.278206328 8.672478957 8.270314776 8.773919339 8.305652769 8.380375713 108804635 pbrA Metal Resistance Lead Rubrobacter xylanophilus DSM 9941 8.986450718 9.017713967 9.006487512 8.673383485 8.406687666 8.518068124 8.321570323 8.461556598 7.613482576 8.58173566 8.550870933 8.455798017 209401760 narG Nitrogen Denitrification uncultured bacterium 8.72613354 8.728239815 8.917626759 8.203495083 8.212031209 8.403760347 8.515717142 8.523587402 8.602975913 8.566681851 8.527107264 119449965 aclB Carbon cycling Carbon fixation marine gamma proteobacterium HTCC2143 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.872961231 9.050007854 8.934091842 8.047774204 8.05227046 8.311327145 7.879156497 7.907045367 8.184947704 8.126497988 8.342082267 118656399 ChrA Metal Resistance Chromium Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 8.804355639 8.596943676 8.357828168 8.893455259 8.77120619 8.449690289 8.782937098 8.596143495 8.39273983 8.472746079 8.818773406 8.184402016 76057029 narG Nitrogen Denitrification uncultured bacterium 8.916781354 8.823431062 8.285252122 8.318059885 8.382053007 8.421546837 8.12097168 8.474436347 8.452232747 8.441834677 8.505500162 163662509 ChrA Metal Resistance Chromium Methylobacterium extorquens PA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 8.440138938 8.39807516 8.242456352 7.91312296 8.032276191 8.178786484 8.041158704 8.15453616 8.398078427 8.142487861 7.893490619 8.00779232 228767087 nplT Carbon cycling Carbon degradation Starch Bacillus pseudomycoides DSM 12442 8.457721595 7.880299616 8.574279234 7.83984552 7.696343276 7.560565061 7.239703219 7.109279433 7.794611222 7.237156839 7.238601541 7.948843904 118575772 pstB Stress Phosphate limitation Cenarchaeum symbiosum A 8.960296248 8.872353131 9.029912359 8.625276559 8.573031131 8.266532339 168192786 sox Sulphur Sulphur oxidation Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 8.867219287 8.656633674 8.732100569 8.441371632 8.46231996 8.210663701 8.473852929 8.535622217 8.674005803 8.453390334 8.242433498 8.562815315 88702619 nosZ Nitrogen Denitrification uncultured soil bacterium superkingdom:Bacteria; 8.69599344 8.038465326 7.674379054 8.120969533 8.050579191 8.089049321 8.19869866 32307889 narG Nitrogen Denitrification uncultured bacterium 9.287575883 9.271810379 8.840862032 9.821758132 9.450078204 9.257529988 9.749578167 9.612412542 9.388839461 9.418897327 9.351850512 9.088156196 260173517 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Bacteroides sp. D2 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 8.71048491 8.534944658 8.665136666 8.27736027 8.031858918 8.458681787 8.833313696 8.751422289 8.616217474 282948099 ABC_antibiotic_transporter Antibiotic resistance transporter Citrobacter rodentium ICC168 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 8.547255251 8.720790619 8.809852018 8.17497878 8.215007735 8.132999789 8.212689077 7.933755746 8.295880103 7.970463402 7.954271814 8.39096745 207090051 TerC Metal Resistance Tellurium Nitrosococcus oceani AFC27 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 9.506522896 9.586210171 9.498073588 8.976933564 8.807469743 8.755666803 8.830560659 8.888133358 8.254690849 9.018549076 13898441 dsrA Sulphur sulfite reductase sulfate-reducing bacterium STC superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 8.728568333 8.845444495 8.787068409 8.219565445 7.772960637 8.023433071 7.768230128 7.681440169 8.077317172 7.785009787 8.08360641 170017607 pstB Stress Phosphate limitation Leuconostoc citreum KM20 8.709749275 8.483718985 8.704993622 8.012279464 7.801917985 7.812581395 7.709982031 7.458088103 7.98548191 7.549935639 7.579255573 8.028007339 28974732 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 9.637976431 9.421935047 9.385539048 9.647810061 9.705194614 9.442812753 9.534712963 9.905679466 9.090518854 9.512990973 9.528228279 9.546055901 268163777 sigma_32 Stress Sigma factors Photobacterium damselae subsp. damselae CIP 102761 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium damselae; 8.67574178 8.65974959 8.770851978 8.270929717 8.177706898 8.204364801 7.835634113 8.079339978 8.040141964 8.032670483 7.836949169 8.233186507 119697264 katE Stress Oxygen stress Mycobacterium sp. KMS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 9.033330656 8.961870835 8.969846224 8.331559784 8.456631354 8.477722319 8.640723687 8.257607779 8.900116578 8.505445422 8.397111724 8.425949325 3643998 nagG Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas aeruginosa 8.978761788 8.927723211 8.919446359 8.115730242 8.042700512 7.966273429 7.381066829 6.996148494 8.364377037 7.753740124 7.944614065 196193778 ChrA Metal Resistance Chromium Alcanivorax sp. DG881 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 9.136813303 9.085392346 8.323852584 7.820368497 8.423951988 8.068974778 8.242137712 8.30015883 8.218067992 31414751 endochitinase Carbon cycling Carbon degradation Chitin Verticillium fungicola superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;genus:Verticillium; 8.300935414 8.059040252 8.770943389 8.628971555 8.808895425 8.606249232 8.966502505 8.747264527 9.021908604 9.153165658 8.385829459 239817384 fnr Stress Oxygen stress Variovorax paradoxus S110 10.03368764 10.02965806 9.839606341 9.366483621 9.634425949 9.704319228 10.15932339 9.669649961 9.966458751 9.857636436 10.04672365 9.804694574 15828087 ZntA Metal Resistance Zinc Mycobacterium leprae TN superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium leprae; 9.245471822 9.500578915 9.585874689 8.92504636 8.81402604 8.833615423 8.619788209 8.357303375 8.828396725 8.710755607 8.721921913 8.964673136 99083279 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.933064306 8.810907937 8.947708308 8.392584944 8.326367227 8.302967418 8.397920944 8.49725987 8.369094061 8.39717326 8.311568898 8.521835194 72121215 fnr Stress Oxygen stress Ralstonia eutropha JMP134 9.083436153 9.103091563 9.086027757 8.782642257 8.560298914 8.445864019 8.459301603 8.629751797 8.807146056 8.820176407 8.864462596 15621066 cytochrome_c Bioleaching Electron transport Sulfolobus tokodaii str. 7 6.849822472 7.194563608 120405941 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.206421913 8.085826304 7.877840347 8.249235634 8.110084838 8.233790556 8.168216444 7.965060946 67910920 CODH Carbon cycling Carbon fixation Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 9.900914561 9.85285845 9.806906161 9.514034145 10.1257803 10.05210232 10.44469268 8.862822584 10.47437835 9.346331901 9.474836618 9.51853814 119776320 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 8.530310382 8.603497737 8.777760542 8.222506205 8.220136979 7.890454704 8.54598109 8.569694734 8.471095574 8.575431491 8.255609251 119538648 sigma_24 Stress Sigma factors Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 9.631066807 9.751937092 9.762072021 9.076509968 9.119013483 9.001407596 9.018060966 9.067660242 9.013924237 9.228894966 9.056451811 9.477199762 211587994 bphA Organic Remediation Aromatics Polycyclic aromatics Penicillium chrysogenum Wisconsin 54-1255 8.737875223 8.314508299 8.378168795 8.852530199 8.351200561 7.910659177 8.531241615 8.552974077 8.524742961 8.563986029 8.510045834 8.046383144 114316543 obgE Stress Radiation stress Granulibacter bethesdensis CGDNIH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 8.640013368 8.770178361 8.783424553 9.007487062 8.694035859 8.812935223 8.296968552 8.711979391 8.517857842 77385595 CopA Metal Resistance Copper Pseudomonas fluorescens PfO-1 9.264989262 8.952143439 8.98117375 8.634430363 8.782548177 8.831224024 9.189421836 8.899805946 8.724978005 8.863064291 8.918700086 121594756 sigma_24 Stress Sigma factors Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 8.652000851 8.598782398 8.552045816 8.097222044 8.269192319 8.668001465 8.896196147 8.411211148 8.906485385 7.983006033 8.011152373 8.343694082 117619683 tfdA Organic Remediation Aromatics Chlorinated aromatics Aeromonas hydrophila subsp. hydrophila ATCC 7966 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas hydrophila; 9.056079662 9.165035871 8.869983197 8.302756167 9.19590599 9.447311946 9.413680242 9.32251005 9.155195252 9.218864993 9.076349502 92911790 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.698260417 8.772259013 8.739644417 8.512642769 8.312748719 8.458660801 8.643529914 8.586061304 167630730 atzA Organic Remediation Herbicides related compound Heliobacterium modesticaldum Ice1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Heliobacteriaceae;genus:Heliobacterium;species:Heliobacterium modesticaldum; 8.251983158 8.137526874 8.017682157 7.851289714 8.210734952 8.010262792 8.034900027 8.168530279 7.618945432 157915826 SMR_antibiotics Antibiotic resistance transporter Salinispora arenicola CNS-205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 9.220088064 8.97854479 8.990808767 8.643228619 8.56663806 8.425596748 8.366189243 8.54705752 8.448115159 8.402789354 8.425964049 8.740083695 118030226 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 10.58958886 10.26029596 10.35472216 9.839248801 9.692760322 9.669397754 9.908453791 9.739224477 9.681227647 9.888150676 9.962024119 9.795152251 39995891 hydrogenase Energy process Energy process Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 8.666685607 8.754543223 8.891284982 8.345690485 8.314454978 8.482312367 8.440372271 8.246784599 8.592404442 8.246468673 8.401965308 8.6756925 209499625 AceB Carbon cycling Carbon degradation others Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.770565297 8.8787557 8.861360683 8.669419602 8.169789358 8.448666867 8.875594954 8.702964099 8.938599209 8.66099115 8.651431652 8.52515984 22417101 pcpE Organic Remediation Herbicides related compound Sphingobium chlorophenolicum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 9.049800122 9.057664189 8.964781394 8.816303049 8.977299727 9.107253704 8.691870135 8.854350273 8.864850798 8.951365368 9.113584134 8.947499239 154274530 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Ajellomyces capsulatus NAm1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 8.023496787 8.487073914 8.337914325 7.634251843 7.476658252 7.664151887 7.4888666 7.910578272 7.398020306 7.380231379 7.919691724 146304952 ABC_transporter_I Bioleaching other category Metallosphaera sedula DSM 5348 8.434700394 8.599681935 7.549315092 7.425224747 7.443646625 7.306017324 6.84596945 7.410362546 7.359374467 7.510084446 21219537 TerD Metal Resistance Tellurium Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 9.040135445 8.636250846 8.55064265 8.61751016 8.45128126 8.139946848 8.368583105 8.273142112 8.403374387 8.430164799 8.566585484 8.203695506 241773665 fnr Stress Oxygen stress Asticcacaulis excentricus CB 48 8.479946168 8.575006568 8.741412748 8.411460755 8.102923514 8.042405765 8.00571417 8.360983013 8.428564441 8.297694175 8.261154873 8.443554037 76803733 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 8.655045899 8.489751178 8.46305979 8.673229885 8.565821085 8.335454724 8.669944669 8.609836216 8.534682751 8.692305916 8.639843925 8.57247746 262338554 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 10.10214036 10.0400237 10.05036727 9.212559574 9.417021163 9.797239383 10.09235296 9.636592165 10.02259699 9.600433906 9.713796028 9.729200901 260552284 xylA Carbon cycling Carbon degradation Hemicellulose Lactobacillus fermentum 28-3-CHN superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus fermentum; 9.379614133 9.233587358 9.543003995 9.159385684 9.145093692 8.784605052 9.26195591 9.214882742 167361256 ChrA Metal Resistance Chromium Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.443153264 8.450308948 7.947433451 7.977547081 7.534826993 7.902033284 8.01188775 8.406417114 8.088840905 7.680418663 7.715341425 157411468 napA Nitrogen Dissimilatory N reduction uncultured prokaryote 9.15046091 8.130582807 8.229528454 8.659972777 8.302814732 8.568578418 8.273933158 8.584427995 8.475434708 8.50340843 8.726679624 8.38660725 73662713 gyrB other category gyrB Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus saprophyticus; 8.57397906 8.231755816 8.71228253 7.995859776 7.460199112 7.982291882 7.63966106 7.326923113 7.315383748 7.384794741 7.630943079 7.80291697 32262572 CopA Metal Resistance Copper Helicobacter hepaticus ATCC 51449 8.482344461 8.48437552 8.555465686 7.839475893 7.619960224 7.951528999 8.225827234 7.320327832 7.659649091 8.156911292 7.800220286 260651430 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 8.167089367 8.082710483 7.766720398 7.783682489 7.824845546 7.924150082 8.382060912 8.34210028 8.085071849 7.872472158 39651383 sox Sulphur Sulphur oxidation Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.410715184 8.627654535 8.280350118 8.263303444 8.471521903 8.765048965 8.203838485 8.597759294 7.973032983 8.099813285 8.135081919 196477735 ArsC Metal Resistance Arsenic Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 8.752339985 8.57571418 8.643444411 8.293330582 8.299100946 8.215028542 7.935174774 8.185666083 8.194481421 8.154679606 8.116040359 8.407872287 91682469 bclA Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.423993808 8.377675556 8.41377612 8.519748057 8.390479804 8.345991539 8.800056059 8.469994773 8.582614702 8.386621033 8.702276219 53758066 ArsC Metal Resistance Arsenic Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 8.367149042 8.2602557 8.119590313 8.273391069 8.39118719 8.105847899 8.213604895 8.339747404 8.227596057 8.517584962 8.024785472 156935911 oxyR Stress Oxygen stress Enterobacter sakazakii ATCC BAA-894 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 8.330982268 8.445239318 8.635707331 8.711289941 8.625810524 8.264718171 8.614158572 8.532274049 8.601245878 8.311803829 8.145946315 8.039982015 88783391 catB Organic Remediation Aromatics BTEX and related aromatics Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 9.652413 9.664008917 9.639835241 9.032214833 8.981032693 8.98856466 9.298914881 8.943058727 9.500410544 8.925559135 8.812341834 9.114102559 27353567 B_lactamase_C Antibiotic resistance Beta-lactamases Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.669062483 8.314855782 8.807113732 8.747649873 8.494390641 8.679639543 8.466458793 8.451859211 8.515804856 8.638056956 8.373355761 262196338 fnr Stress Oxygen stress Haliangium ochraceum DSM 14365 8.451113655 8.199418794 8.28614579 8.243208729 8.250277922 8.247948176 8.011193393 7.965667998 8.048322556 8.126047292 7.769963449 150410129 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Ajellomyces capsulatus NAm1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 8.504809976 8.602040169 8.785744897 8.037896584 8.03096534 8.264354246 8.685000347 7.795772891 8.927349101 7.969062731 7.604571693 7.792795537 161329305 pilin virulence pilin Shewanella benthica KT99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella benthica; 7.280353029 7.697331954 7.674382847 6.926152807 7.766026434 7.337704601 7.486091218 162450056 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 8.31706562 8.052997445 8.18601828 7.43858315 7.67160098 7.784539957 7.683469778 7.413034005 7.632701479 7.403355697 226227848 sigma_24 Stress Sigma factors Gemmatimonas aurantiaca T-27 superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 7.433232793 7.186560244 7.095586906 7.006415614 7.586979885 239808020 pstB Stress Phosphate limitation Geobacillus sp. WCH70 8.852817263 8.95304835 9.042350872 8.304761818 8.411579217 8.141941051 8.038943789 7.886662543 8.264106586 8.176611451 8.157845668 8.488286608 151585961 atzA Organic Remediation Herbicides related compound Halorubrum lacusprofundi ATCC 49239 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 9.365753191 9.251882992 9.056526486 8.766686876 8.742033156 8.23615418 8.853062833 8.851910103 8.712229321 8.765184382 8.487716352 8.575492687 149939127 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 8.18363661 8.173251156 8.523003277 7.539239179 7.449490749 7.693232384 7.333641846 7.315472113 7.69062359 7.254173951 7.101116269 7.417989621 116048312 nifH Nitrogen Nitrogen fixation uncultured soil bacterium superkingdom:Bacteria; 8.428208491 8.382307116 8.417563911 7.926663651 7.998642745 8.040255292 7.97882379 7.969119837 8.117546949 8.260173262 8.188718499 8.146554944 2764919 helicase_family_4_DnaB_like Bacteria phage REPLICATION Bacillus phage SPP1 order:Caudovirales;family:Siphoviridae;genus:Lambda-like viruses; 9.061000811 9.127723393 9.210853606 8.586712877 8.591711332 8.493341897 8.376472971 8.535696661 8.297398051 8.570457165 8.597558218 8.721046912 118472281 SMR_antibiotics Antibiotic resistance transporter Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.451889367 8.186796677 8.241489549 8.042017604 7.942168991 7.632760262 7.695176036 7.900157577 8.143504119 7.863430087 8.223996588 7.452237081 108804884 AceB Carbon cycling Carbon degradation others Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 8.343525122 8.460192922 8.109648388 7.83973486 7.83805651 7.455026631 7.982064781 7.808897304 8.035093016 8.172134682 8.159543589 89512818 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.793566902 8.728744759 8.828108593 8.316349367 8.308478203 8.380540272 8.207006993 8.039790644 8.252200922 8.33791272 8.340898218 8.372123607 258524352 amyA Carbon cycling Carbon degradation Starch Desulfurivibrio alkaliphilus AHT2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfurivibrio;species:Desulfurivibrio alkaliphilus; 8.643818836 8.964181033 8.560004791 8.601363022 7.875185722 8.769450843 8.999590886 8.697725549 8.962387305 8.72359681 8.549558311 8.513813075 14021335 pcc Carbon cycling Carbon fixation Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 8.339628847 8.383214495 8.406579978 8.033484391 8.122066402 8.245688182 7.680130857 8.067646409 7.881484742 7.758282814 8.147635135 7.98843133 283836559 type_III_secretion virulence secretion Citrobacter youngae ATCC 29220 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter youngae; 8.642872302 8.325232565 8.751442104 8.322912634 8.155090381 7.925554827 7.957564898 8.174312816 7.909955746 8.141572417 8.252118391 119450673 inv virulence invasion marine gamma proteobacterium HTCC2143 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.897382547 8.693971079 8.995048306 8.544440635 8.107320476 8.090300029 7.998701314 8.118463659 8.094714832 8.404769803 8.185087763 8.503018365 116662379 cadBD Metal Resistance Cadmium Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8.282555993 8.452913391 8.229946309 8.25255128 8.653266622 8.755430801 8.733534089 8.966864856 8.5574598 9.081369152 8.951708816 8.949342249 111071930 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.332495785 9.10395992 9.40893515 8.717301806 8.589508918 8.581603579 8.503934441 8.310513557 8.558509196 8.697470829 8.641032156 8.695051697 37199712 pilin virulence pilin Vibrio vulnificus YJ016 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 8.385771426 8.219701598 8.317585772 8.154678822 8.194245534 7.448429626 7.605125554 7.397400079 8.183500584 7.973308071 7.838288302 7.580064662 228569276 glnA Stress Nitrogen limitation Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 9.470658261 9.428344918 9.440251921 9.131606958 9.142186609 8.943740486 8.724878644 9.014852639 8.842664848 8.928679463 8.897346365 9.028196018 237736374 pstB Stress Phosphate limitation Fusobacterium mortiferum ATCC 9817 7.067663252 7.294432177 7.031582106 6.500128195 7.339074454 6.917865838 7.283452559 82393825 nagG Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas sp. KB35B superkingdom:Bacteria;phylum:Proteobacteria; 8.212382489 8.386626847 7.831479077 7.869499754 7.654091956 7.350035098 7.420469828 7.836547075 7.456073079 7.510785127 7.750232888 237807423 amyA Carbon cycling Carbon degradation Starch Tolumonas auensis DSM 9187 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Tolumonas;species:Tolumonas auensis; 8.744067674 8.490452343 8.859060063 8.294021553 8.393674095 8.096876681 8.359852864 8.666472012 8.640696141 8.604210802 8.423232357 8.741213409 154253694 pimF Organic Remediation Aromatics Aromatic carboxylic acid Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 8.733273949 8.832505184 9.132550917 8.54139095 8.369806598 8.439670429 8.237603717 8.495710889 8.651068743 8.305239374 8.21488244 8.568993687 226943372 iro virulence Azotobacter vinelandii DJ superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 8.971544765 8.996209964 9.009093724 8.349878652 8.175666938 8.039785693 8.275907647 8.094721684 8.393336211 8.142512124 8.233684579 8.391729563 209958486 sigma_32 Stress Sigma factors Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 8.537879454 8.703208005 8.35951981 8.922658229 8.774788978 8.811483287 8.640517752 9.362413798 8.50188361 9.24248924 9.106244827 8.885496135 206590728 silC Metal Resistance Silver Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 11.13340684 10.95357401 11.02341071 10.71014338 10.53674733 10.75806914 10.87683668 10.4652925 11.05161801 10.67114744 10.77863089 10.70223159 225105854 AceB Carbon cycling Carbon degradation others Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 9.548466502 9.706934432 9.506722254 10.10951615 9.788305782 9.464500983 10.22336732 10.10326103 9.640076071 10.00413426 9.706473701 9.726024303 67516497 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 8.521394955 8.517880263 8.317626082 7.960024484 7.766923225 7.956831265 7.95119887 7.873679217 8.188642365 7.935905227 8.206736277 7.965731009 283438386 sigma_70 Stress Sigma factors Pirellula staleyi DSM 6068 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Pirellula;species:Pirellula staleyi; 9.051920815 8.906750245 8.950752845 8.446641284 8.587014144 8.266065805 8.264776192 8.488355629 8.595331048 8.332842603 8.185959002 8.565928095 68560999 FTHFS Carbon cycling Acetogenesis Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 8.361131341 8.039100927 8.420488531 8.007230355 7.807553795 7.821986522 262284393 mcrA Carbon cycling Methane Methane production uncultured archaeon superkingdom:Archaea; 9.001614517 9.273662379 9.036341175 9.4437222 9.339133506 8.892918604 9.486060804 9.455727001 9.025840172 9.279615846 9.012574839 8.941022052 159177587 grpE Stress Heat shock alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 9.360086596 9.15960927 9.218880952 9.572206909 9.11874342 8.891263584 9.45174193 9.474127363 9.101374193 9.547093834 9.761064902 9.077304388 116668998 TehB Metal Resistance Tellurium Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8.855049974 8.906562587 8.515900108 8.082339754 8.801306512 8.899362317 9.292299883 8.045225813 9.16458207 8.305619279 8.489790633 8.651891231 85058228 ArsC Metal Resistance Arsenic Sodalis glossinidius str. 'morsitans' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Sodalis;species:Sodalis glossinidius; 9.145561789 9.179644375 9.776929929 9.191683877 9.274199717 8.948347316 9.030826732 9.679190804 9.058569845 9.37580934 9.486927624 9.520826036 270505470 sigma_24 Stress Sigma factors Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 7.254175052 7.388104235 6.880544549 7.132030414 7.623484618 7.580068266 7.142319721 7.407933452 45738230 PceA Organic Remediation Others Desulfitobacterium hafniense 9.173853827 9.231826536 9.254777848 8.874873138 8.974539684 8.945208971 8.823473549 8.854755368 9.184869353 9.20173415 8.699207839 15625036 sox Sulphur Sulphur oxidation Rhodovulum sulfidophilum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodovulum; 9.048278603 8.756119368 8.768653965 8.345040893 8.269179227 8.123261973 8.771463368 8.307861292 8.811701565 8.210943381 8.521840123 8.350055983 66848854 nitA Organic Remediation Aromatics Other aromatics Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 8.361076002 8.972464964 8.822934489 8.790145821 8.659118329 8.437909248 8.921068145 9.156768722 8.839451178 9.042964955 8.742072109 8.676033443 269794902 sigma_70 Stress Sigma factors Sanguibacter keddieii DSM 10542 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Sanguibacteraceae;genus:Sanguibacter;species:Sanguibacter keddieii; 8.753294436 9.327507998 9.223861963 8.718120337 8.765422035 8.810597993 9.04465375 8.576684151 9.209072147 8.478679888 8.265114037 8.641840311 157406168 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 8.998194108 9.001981121 8.84653376 8.712321055 8.95245068 8.6280998 8.374479254 9.136178552 8.874110671 8.972189756 9.099808848 160355818 nrfA Nitrogen Dissimilatory N reduction Bacillus selenitireducens MLS10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus selenitireducens; 9.383067813 9.302865015 9.517835439 8.808059763 8.568018992 8.618616651 8.787475365 8.771869507 8.761342667 8.804131445 8.907417522 162568509 aoxB Metal Resistance Arsenic Pseudomonas sp. 1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.151470902 8.095647262 7.555397498 7.78974009 7.696469728 7.493444625 7.971972909 8.087158344 7.991164324 8.157074134 83954568 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 9.411083922 9.746576409 9.647464975 9.318032099 9.362151786 9.566466124 9.607379414 10.07232751 9.516596103 9.938851963 9.964587634 9.822087453 154247979 atzC Organic Remediation Herbicides related compound Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 9.163693169 9.037966845 9.274475397 8.899901173 8.813046579 8.571404072 8.835136737 9.079320529 8.721112026 8.875981649 8.72514082 9.046955953 145304821 exochitinase Carbon cycling Carbon degradation Chitin Salinispora tropica CNB-440 8.767029111 8.890779027 8.615635205 8.306037819 8.34104219 8.359297552 8.739168533 8.31516333 8.853787892 8.350265472 8.241369716 8.240238265 239916725 pstB Stress Phosphate limitation Micrococcus luteus NCTC 2665 8.555723752 8.377562941 8.694754354 7.804288965 8.110142117 8.013427963 8.317413071 8.011213534 8.569225151 7.887941771 8.040246644 8.087659545 72118456 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 9.176797512 9.094931331 9.198604905 8.629350629 8.316477686 8.597726736 8.562749817 7.97350265 8.379719692 8.362761862 8.591822178 77362237 silC Metal Resistance Silver Pseudoalteromonas haloplanktis TAC125 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas haloplanktis; 10.41428835 10.39285158 10.45406844 10.10895273 10.42030655 10.17971216 10.17061508 10.3683076 10.4113368 10.48190774 10.54241607 10.02118842 145221603 nhh Organic Remediation Aromatics Nitoaromatics Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.877167669 8.953061461 8.857253334 8.69573938 8.521271027 8.615313331 9.081775258 8.735191334 9.090778947 8.882050252 8.942044665 9.073769723 221066116 pstC Stress Phosphate limitation Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 9.167849748 8.908734534 9.207674169 8.759496098 8.655169939 8.6385131 8.315893409 8.356765502 8.415529436 8.441833423 8.464849887 8.642789563 229420716 fnr Stress Oxygen stress Fusobacterium mortiferum ATCC 9817 8.482238187 8.344777938 8.576753925 7.952853829 7.937440792 7.63363608 7.284298433 7.235025921 7.79441016 7.420460741 7.526315831 7.743711805 150386993 CadA Metal Resistance Cadmium Victivallis vadensis ATCC BAA-548 superkingdom:Bacteria;phylum:Lentisphaerae;family:Victivallaceae;genus:Victivallis;species:Victivallis vadensis; 9.766034958 9.614836495 9.686138853 9.576004498 9.383583015 9.3299784 9.247452302 9.397719419 9.341618032 9.558980749 9.701818823 9.596893599 7160170 mdlD Organic Remediation Aromatics Other aromatics Streptomyces coelicolor A3(2) 8.38984214 8.233480114 8.311321621 8.0328893 7.980994207 7.773978695 7.905425618 7.771280837 7.983521304 7.848143773 7.817486533 7.880351972 220719430 gyrB other category gyrB Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 8.933918247 8.972263519 9.094385954 9.206276551 9.009923042 9.182886846 9.705770982 9.293116036 9.42946743 9.070784783 9.339782052 212636867 cytochrome Energy process Energy process Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 9.059578871 9.013547892 9.054224416 8.452947914 8.534113367 8.373451611 7.806888057 7.903766832 8.180199329 7.943986226 8.247089554 146284301 sigma_32 Stress Sigma factors Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 9.547458174 9.613785404 9.630747262 9.08389883 8.896707437 9.219222911 9.207976342 8.883730892 9.402726793 9.302224818 9.525146024 9.120103228 116672619 pcaG Organic Remediation Aromatics Other aromatics Arthrobacter sp. FB24 9.448194213 9.209156758 9.007700551 9.624927645 9.306454371 8.70697626 9.36512088 9.547911471 8.88104624 9.291820865 9.262834112 21219574 cellobiase Carbon cycling Carbon degradation Cellulose Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.92217531 8.801028936 9.043862285 8.473576752 8.427397454 8.676240849 8.35803961 8.281975887 8.337986132 8.487035069 8.722549127 8.637281901 226318176 fnr Stress Oxygen stress Deinococcus deserti VCD115 9.859330731 10.0716325 9.619613756 8.930661354 9.712656781 10.00060078 9.924655053 10.04788108 9.294833104 9.485943272 9.323869545 91684474 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.875276406 8.751108074 8.508924976 7.871309712 8.231219664 8.410194877 8.190535554 8.559135974 8.1102132 8.397031426 7.994266696 229749363 cellobiase Carbon cycling Carbon degradation Cellulose Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 8.270331691 8.228947385 8.220923299 8.258425946 7.924474486 7.595889336 8.048816233 7.825300264 8.356516425 7.748632122 7.733523295 7.70296466 161378932 ureC Nitrogen Ammonification Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 8.801971063 8.813452723 8.706527341 8.633543239 8.662695607 8.619612067 8.746379824 8.741701328 8.521248539 8.596977628 8.612807399 8.418520517 221722453 ChrA Metal Resistance Chromium Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.93198281 8.678313083 9.172984557 8.972672064 8.849142854 8.563527557 8.429183528 9.069519029 151361599 nifH Nitrogen Nitrogen fixation Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 9.312647424 9.421806537 9.385445576 8.770680634 8.770933624 8.636137774 8.51545151 8.755842556 8.830587667 8.655067261 8.638240331 8.917317035 146141304 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 10.04215336 9.957960466 9.921286493 9.608352443 9.753062149 9.613393368 9.783795128 9.861451111 10.03955634 9.796919229 9.802246986 9.472462393 117561692 hly virulence hemolysin Aeromonas hydrophila subsp. hydrophila ATCC 7966 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas hydrophila; 8.17344503 8.354325703 8.323921049 7.565474742 7.845295009 8.118566939 8.064846686 7.864018536 8.493267162 7.541961505 7.704385692 7.650852626 218356397 pcaG Organic Remediation Aromatics Other aromatics Escherichia fergusonii ATCC 35469 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia fergusonii; 8.238813884 8.071789995 7.227918823 7.240037567 7.481023597 7.687093691 7.106875761 7.500715895 7.027626708 7.271843051 239837828 grpE Stress Heat shock Micrococcus luteus NCTC 2665 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus;species:Micrococcus luteus; 9.399725219 9.312842771 9.516129523 9.114957225 9.056862511 8.818486344 9.167149356 9.394720046 8.918199015 9.459350112 9.335682396 9.369935223 240103143 proV Stress Osmotic stress Thermococcus gammatolerans EJ3 8.60729228 8.21693206 8.352813849 7.790225773 7.778580611 7.650587727 7.419242171 7.433642117 7.944054016 7.496630352 7.444618957 7.581957491 163794757 sigma_24 Stress Sigma factors alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 10.18568911 10.20709828 10.34733602 9.373931612 9.437087023 9.388583004 9.578767999 9.391237756 9.473705523 9.421928644 9.473738546 9.679013317 56314116 pcc Carbon cycling Carbon fixation Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 8.041622652 8.278581899 7.316352521 7.393081189 7.57152092 7.918995953 6.911843247 7.974592319 7.087118664 7.174923624 7.001485108 76802550 pimF Organic Remediation Aromatics Aromatic carboxylic acid Natronomonas pharaonis DSM 2160 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natronomonas;species:Natronomonas pharaonis; 9.634076751 9.345907312 9.268986471 9.087227323 9.285937662 9.160178303 9.201930313 9.464600114 9.272821915 9.485383806 9.414362666 9.478987382 91978111 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.639049265 8.835772937 8.725973363 8.980803537 8.949019326 9.016716061 8.808536999 9.307411877 8.868442909 9.249099078 9.249295807 9.325975184 86372242 contractile_central_tail_tube_protein Bacteria phage STRUCTURAL Stenotrophomonas phage SMB14 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 8.186631085 8.160566864 8.142348488 7.479152569 8.403866419 8.170377682 8.141388518 8.279532189 8.356922264 91763331 pilin virulence pilin Candidatus Pelagibacter ubique HTCC1002 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales;genus:Candidatus Pelagibacter;species:Candidatus Pelagibacter ubique; 8.391490875 8.793748421 8.758770697 7.678090847 8.211273564 8.591915091 8.96626024 8.507099003 8.581301181 8.080497342 8.431683943 8.37641069 89901201 Arylest Organic Remediation Aromatics Other aromatics Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 9.209725286 9.240445709 8.46009837 8.415197686 8.326755522 8.232502292 8.320679043 158538027 mcrA Carbon cycling Methane Methane production uncultured euryarchaeote superkingdom:Archaea;phylum:Euryarchaeota; 8.316399888 8.179492971 8.343989678 7.948223485 7.786662875 8.527567016 8.566355995 8.421226627 8.206645516 8.149324322 7.86139586 20501991 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.834515202 8.409442574 8.557282221 8.970643957 8.459311591 8.16551638 8.539355548 8.569556929 8.431987519 8.472302558 8.475216618 7.9869918 56677923 glnA Stress Nitrogen limitation Ruegeria pomeroyi DSS-3 9.192364492 9.096980464 9.318594042 8.073818266 8.647717151 8.626562443 8.303598978 8.757968967 8.519793768 8.684469505 8.794100747 171465226 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9.09635885 9.209596355 9.318482985 8.612132329 8.484776888 8.556649248 8.708193553 8.520139888 8.349946571 8.236113089 8.322018083 8.761854033 159179813 AceB Carbon cycling Carbon degradation others alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 8.47944611 8.673505077 8.63440954 8.033271253 8.324440187 8.249100945 8.284874852 8.698240002 8.530252641 9.008081604 8.7217188 8.548973033 218757575 ChrA Metal Resistance Chromium Desulfovibrio vulgaris str. 'Miyazaki F' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 8.546473445 8.545712638 8.633895816 8.330878066 8.312089454 8.148414567 8.059914105 8.258588374 8.261514904 8.261109241 8.430561022 8.167355328 211957163 nitA Organic Remediation Aromatics Other aromatics Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 7.940633541 7.442680923 7.504528583 7.813349502 8.073676235 7.767171683 7.933261061 7.392496575 7.822813385 61968003 endochitinase Carbon cycling Carbon degradation Chitin Torrubiella confragosa superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Cordycipitaceae;genus:Torrubiella; 8.15796019 8.252738282 7.396101958 7.453253376 7.470329184 7.622381095 7.239807038 7.637383141 7.505174659 7.438903114 170290133 CopA Metal Resistance Copper Candidatus Korarchaeum cryptofilum OPF8 superkingdom:Archaea;phylum:Korarchaeota;genus:Candidatus Korarchaeum;species:Candidatus Korarchaeum cryptofilum; 8.008141253 8.158011184 8.372073691 7.450109437 7.192970048 7.382482708 7.368650422 7.029593284 7.580086224 7.388702356 7.131000553 7.562503892 115373024 sigma_24 Stress Sigma factors Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 9.014114555 8.542331666 8.733061733 8.731192198 8.33595978 8.708721624 9.032783514 8.98670012 9.117588413 9.010208603 9.291780505 78093522 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.61907729 8.947575789 8.845043054 9.261678844 8.687484254 8.515442839 9.186191367 8.990349657 9.204948973 8.916209653 9.021051527 8.68372789 28627880 CadA Metal Resistance Cadmium Bacillus sp. MSA 235 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 9.063925463 9.140866213 9.007799042 8.682045813 8.61610702 8.450660053 8.536564914 8.739800626 8.687911564 8.393069851 8.633662663 8.620619987 160938658 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 8.923001782 9.096518732 8.941847586 8.5650751 8.788153319 9.151512241 9.460065883 9.376250833 9.055609007 9.485972752 9.339432819 9.607866415 237759416 AceB Carbon cycling Carbon degradation others Corynebacterium kroppenstedtii DSM 44385 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium kroppenstedtii; 8.915549583 8.815733619 8.387251756 8.613797255 8.505169907 8.348234986 8.746317588 8.287778722 85825337 narH Stress Oxygen limitation Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.364659864 8.739049478 8.494738472 8.712222095 8.621393152 8.615146157 8.919695969 8.704499952 8.845554515 8.732868119 8.809930292 8.773993727 74422788 benAB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens 8.318732783 8.397195685 8.399125573 8.114293701 7.967522919 8.315564751 8.385764628 8.493633076 8.541487539 8.363201593 8.257147262 8.24225829 237785668 ahpC Stress Oxygen stress Corynebacterium kroppenstedtii DSM 44385 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium kroppenstedtii; 8.028966544 7.785097523 7.467260199 7.420747507 7.483121579 7.229739716 7.381652181 7.762624856 7.448372936 7.169148933 7.498311947 152975268 ChrA Metal Resistance Chromium Bacillus cereus subsp. cytotoxis NVH 391-98 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cytotoxicus; 8.311387967 8.276165499 8.602261305 7.874215964 7.976817577 7.798966458 7.556182655 7.437581463 8.118377004 7.653660004 7.363301608 7.910298172 17230335 phoA Stress Phosphate limitation Nostoc sp. PCC 7120 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc; 7.758722902 7.836957107 7.577654648 7.598068454 7.668923608 7.758347574 7.850894137 7.663950063 7.55329573 196477749 B_lactamase_C Antibiotic resistance Beta-lactamases Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 8.855399084 9.11780773 9.186369084 9.182109731 9.381812796 9.137311227 9.345187332 9.657372223 9.23525465 9.482122502 9.430626482 9.441162199 70983075 endochitinase Carbon cycling Carbon degradation Chitin Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 8.370418704 8.278707353 7.848424563 7.991613968 7.588457988 7.481251576 8.146176122 8.048587492 7.834862093 7.829151063 7.915891945 171090073 pcc Carbon cycling Carbon fixation Geobacillus sp. WCH70 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.198376479 7.397399645 6.963020675 6.998450186 7.394951818 262207476 hrcA Stress Heat shock Comamonas testosteroni CNB-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 9.673464595 9.472793314 9.458468512 8.97182979 8.944312749 9.014525685 8.631710623 8.708529885 8.693580851 8.712650597 8.944844622 9.130560373 148845627 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Planctomyces maris DSM 8797 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces maris; 8.488302968 8.58526551 8.653089961 8.44393131 8.29812537 8.276940083 8.683112571 8.779257034 8.537165874 8.839706415 8.864763447 8.55457631 34733004 endolysin_glycosidase Bacteria phage LYSIS Bacteriophage 44RR2.8t order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 9.025510865 9.042168531 9.152974268 8.471593249 8.330073598 8.448598845 8.342676636 8.160890841 8.243700399 8.169130297 8.381921528 8.628793086 219543945 carA Organic Remediation Aromatics Heterocyclic aromatics Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 9.241974397 9.451611266 9.395175189 9.129854817 9.039578737 9.102844003 8.988807285 9.435892836 8.74542553 9.294288784 9.38150606 8.960503664 228557049 nplT Carbon cycling Carbon degradation Starch Citrobacter youngae ATCC 29220 8.411110339 8.301829956 8.43018265 7.944502147 8.082851773 7.680328331 7.892613959 7.844161456 7.732363925 151280243 ureC Nitrogen Ammonification Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 10.23869103 10.10101607 9.877784203 9.844992821 9.596038088 9.784163005 10.00776531 9.454743037 9.98266432 9.777360129 10.00824468 10.02236724 153808291 pstB Stress Phosphate limitation Bacteroides caccae ATCC 43185 8.447132925 8.508723299 8.788792627 8.06874264 7.936327487 7.701233601 7.588982055 7.758144262 8.193343381 39969205 nagI Organic Remediation Aromatics Aromatic carboxylic acid Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 8.690263809 8.170445338 8.356017408 8.28739303 8.311471768 8.042066426 8.167551328 8.166522817 8.144368793 8.197095129 8.489834088 7.943467712 116699123 bclA Organic Remediation Aromatics Aromatic carboxylic acid Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 8.726213625 8.581033836 7.861824845 7.856216805 7.721147995 7.683574694 7.760165907 7.649690713 7.518354081 8.059590941 147679128 sigma_24 Stress Sigma factors Pelotomaculum thermopropionicum SI superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Pelotomaculum;species:Pelotomaculum thermopropionicum; 8.940604746 8.628319801 8.977819913 8.288992494 8.220759648 7.949122999 8.042004371 8.40394955 8.37966451 8.232901169 8.292403359 8.324598249 126709357 CopA Metal Resistance Copper Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 8.103347133 8.006129624 8.330345681 7.855366663 7.581424345 7.290080986 7.64368495 8.247641058 7.3806342 7.832916566 56709218 dehH109 Organic Remediation Chlorinated solvents Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 9.087345713 9.101329974 8.350321612 8.951609874 8.808069889 9.321701812 9.611327144 9.324411805 9.024988031 8.900672242 9.193239651 8.856864308 29827258 pimF Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 8.178412182 8.089968168 8.17945703 7.568268151 8.161819045 8.18305905 8.265758069 8.105362574 259416463 sigma_24 Stress Sigma factors Silicibacter sp. TrichCH4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 9.255023356 9.350663214 8.983688895 9.026938929 9.105838628 9.145974783 9.129121745 9.172548398 9.165492797 9.728452269 9.723840729 12661158 endochitinase Carbon cycling Carbon degradation Chitin Cellulomonas sp. GM13 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas; 8.523076094 8.321763673 8.061554496 7.766143802 8.974573041 8.837365815 8.827913446 8.844539444 8.791913454 8.853929206 8.673496919 85824657 glnA Stress Nitrogen limitation Roseobacter sp. MED193 9.730026114 9.652158375 9.829413372 9.485149338 9.321686079 9.402265329 9.442172783 9.597709877 9.445348059 9.830014006 9.758846136 9.764927713 116612750 CopA Metal Resistance Copper Arthrobacter sp. FB24 9.881297873 9.819233478 10.18309209 9.350996997 9.556215012 9.918250233 9.585523122 10.15103633 9.747663369 9.958600406 9.756377503 89082881 exaA Organic Remediation Chlorinated solvents Oceanospirillum sp. MED92 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Neptuniibacter; 8.126944924 8.375922437 7.977007859 7.88145115 7.653657238 7.813664185 7.628256364 7.72751336 110006524 mcrA Carbon cycling Methane Methane production uncultured euryarchaeote superkingdom:Archaea;phylum:Euryarchaeota; 8.351365629 8.365986242 8.560993064 8.405105318 8.396019461 7.901638942 8.605376988 8.284891938 8.241875599 8.315456142 8.404803556 251827855 phoB Stress Phosphate limitation Gallionella ferruginea ES-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Gallionella;species:Gallionella capsiferriformans; 8.78073548 8.889024324 8.832820236 8.164760807 7.930917054 8.059095937 7.669112064 7.435475115 8.181719234 7.743882658 7.597490605 8.15055039 53804461 sigma_24 Stress Sigma factors Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 8.40895714 8.52232669 8.803558951 8.692442224 8.72007812 8.489984142 8.79876986 8.565528286 8.771736265 8.811546701 255261126 obgE Stress Radiation stress Sideroxydans lithotrophicus ES-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Sideroxydans;species:Sideroxydans lithotrophicus; 8.171539254 8.280052919 8.137397697 7.772254383 7.561141783 7.918669361 7.904924328 7.420764524 8.31293606 7.555093985 7.646942745 7.767797491 222447598 sigma_24 Stress Sigma factors Chloroflexus sp. Y-400-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus; 8.961843703 8.77822531 8.950565673 8.313515978 8.556848434 8.829001823 9.124576452 8.095277925 9.089513509 8.391958638 8.825754101 8.729109071 71906817 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 8.365661768 8.834040862 8.305630839 7.951637581 7.931297621 8.039342903 8.01669307 8.029830948 7.851469335 8.115026877 262082635 amyA Carbon cycling Carbon degradation Starch Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Haliangiaceae;genus:Haliangium;species:Haliangium ochraceum; 8.373805293 7.976209292 8.12863476 7.947414401 7.851843794 8.095294974 8.269553975 8.214446248 8.226930512 7.988341376 8.244263275 260770212 pstS Stress Phosphate limitation Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 8.277601927 7.943760841 8.23719826 8.033246515 8.061841711 7.898515759 8.112242518 8.339561119 8.394323752 8.129931608 7.893544594 7.952209994 109452497 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.416948969 8.341287659 8.354931287 7.743178581 7.938553972 8.141510947 8.075783069 7.728701246 8.098458053 8.164851901 7.892460388 8.099961878 4520315 proO Organic Remediation Aromatics Other aromatics Sphingomonas paucimobilis superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.77946072 8.730062758 8.498830328 8.680075649 8.736332078 8.503677264 8.432410498 8.705137979 8.784289518 8.752226565 8.578393847 242793959 ABC_antibiotic_transporter Antibiotic resistance transporter Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 8.834934744 8.65592227 8.69796798 8.163084098 8.132502258 8.167197753 7.649477355 8.301910306 7.949732605 7.892398042 7.855027058 114797392 sigma_32 Stress Sigma factors Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 8.94494851 9.049273904 8.554806477 8.712160999 8.598962684 8.916969102 9.129549689 8.707439221 8.973356689 8.594815846 8.885176181 8.885276069 148259775 glycosyl_transferase_EPS Bioleaching EPS Acidiphilium cryptum JF-5 8.015157363 8.256059928 7.867044604 7.941130949 7.657206725 7.997335347 7.734375895 7.867150947 7.547355861 7.440040839 7.545028913 238783907 B_lactamase_C Antibiotic resistance Beta-lactamases Yersinia bercovieri ATCC 43970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 8.686944551 8.409028605 8.565789352 8.105737709 8.055996658 8.004517232 7.915497806 7.986392577 8.084212108 7.986370561 7.832810689 8.133152525 240102876 pstB Stress Phosphate limitation Thermococcus gammatolerans EJ3 8.841886548 8.790124214 9.028674046 7.93767208 7.862622567 7.908808979 7.9224454 7.788158659 8.324807727 7.912038968 8.185145375 197717960 glx Carbon cycling Carbon degradation Lignin Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 8.589170306 8.745867299 8.330146782 8.10247576 8.518494021 8.884759107 8.540822476 8.705925243 8.498181604 8.599492542 8.762667246 8.454317946 91807168 nosZ Nitrogen Denitrification uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 8.834727151 8.514832965 8.736514419 8.124592128 8.712673711 8.381150999 8.48057999 8.80174855 8.208616603 150272429 clpC Stress Protein stress Bacteroides capillosus ATCC 29799 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides capillosus; 9.474151567 9.703717723 9.482426192 9.354113124 9.203525433 8.971134066 9.347243317 9.377048807 9.05623147 9.238003811 9.180263025 9.204042918 262334533 glnA Stress Nitrogen limitation Rhodothermus marinus DSM 4252 8.178465168 8.149186061 8.216620642 7.604997478 7.705415669 7.963162614 8.177252973 8.097634838 8.16430056 8.035251219 8.090671407 8.075234033 1294823 nifH Nitrogen Nitrogen fixation Fischerella sp. UTEX 1931 superkingdom:Bacteria;phylum:Cyanobacteria;order:Stigonematales;genus:Fischerella; 7.936613974 7.928272173 8.192510951 7.285184287 7.125024185 7.207114381 6.554640671 7.363222815 7.0204727 6.938419471 7.261815671 146410451 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 9.428758277 9.461517574 9.445058288 9.318600132 9.328448426 9.103895986 9.246174075 9.584940825 9.512929151 9.290640681 9.099904265 9.331581027 247546011 obgE Stress Radiation stress Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 9.713486261 9.694329924 9.725676323 9.256084509 9.313015379 9.20570485 9.225551315 9.314355784 9.421840897 9.584560583 9.728306295 9.244037908 114561400 CopA Metal Resistance Copper Shewanella frigidimarina NCIMB 400 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella frigidimarina; 8.077971524 7.926480703 8.210473746 7.52503711 7.621572925 7.386570504 7.368479548 7.404823783 7.411775256 7.629273515 7.356290787 166865139 dsrB Sulphur sulfite reductase uncultured Syntrophobacteraceae bacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae; 8.277953037 8.078045595 8.45604744 8.190892204 7.893215633 8.237178425 8.134171147 8.367030987 7.941774361 7.914416356 7.800479164 145701216 4Fe_4S_ferredoxin Bioleaching Electron transport Metallosphaera sedula DSM 5348 8.842884663 8.502900761 8.548510251 8.244963208 8.098591795 8.140243807 7.679029015 7.847403757 8.049138079 8.031760995 7.693181891 8.079776473 118570601 TehB Metal Resistance Tellurium Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 9.220760281 9.617016369 9.417645747 8.534717339 8.852966851 9.188816562 9.541111139 9.143060962 9.507584035 8.849728852 8.815913616 9.116637366 21221345 SMR_antibiotics Antibiotic resistance transporter Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.401663383 8.433774529 7.907769395 7.794785487 7.837282869 8.022806109 8.442181164 8.334238036 8.303148866 7.921389631 7.838759376 186685317 linB Organic Remediation Pesticides related compound Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 8.589067444 8.679502863 8.778745421 7.906973647 7.835996729 8.044014865 7.853298372 8.210460885 8.075481792 8.089751112 7.923575717 8.048679574 256779866 B_lactamase_C Antibiotic resistance Beta-lactamases Streptomyces hygroscopicus ATCC 53653 8.819683314 8.372137044 8.533892917 8.101885462 8.331307446 8.496078053 8.750896543 7.575836008 8.556416013 8.282280143 8.439906041 8.416128548 212637336 pilin virulence pilin Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 8.792986894 8.729827894 8.936703661 8.044921096 7.923633977 8.030003168 7.739646076 7.947241883 8.034858878 7.766151012 7.941116181 8.06761079 119774344 cytochrome Energy process Energy process Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 8.460190456 8.220010868 8.456586024 8.039155049 8.12220982 7.997437433 7.912533065 8.380717173 8.504126072 8.478645215 8.482636144 8.319893525 10639669 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Thermoplasma acidophilum superkingdom:Archaea;phylum:Euryarchaeota;class:Thermoplasmata;order:Thermoplasmatales;family:Thermoplasmataceae;genus:Thermoplasma; 8.856473805 8.762118997 8.722250729 8.140176982 8.214989284 8.346727839 8.29293773 8.400919883 8.152497637 8.3896874 8.496069611 8.717574109 62288592 T4_recomb_endonuclease Bacteria phage REPLICATION Enterobacteria phage RB43 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 8.530629809 8.379259047 8.614303594 7.937506708 8.510834817 8.414299232 8.714863385 7.302378107 8.505379031 7.913306411 8.189683425 8.247900981 163787341 amyA Carbon cycling Carbon degradation Starch Flavobacteriales bacterium ALC-1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales; 8.87189855 8.497443933 8.716880502 8.317832595 8.034332864 8.024234834 7.853312415 7.918174871 8.365605725 7.884811787 7.79434655 8.199173759 72122453 tfdA Organic Remediation Aromatics Chlorinated aromatics Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.45204949 8.464268944 8.535449356 8.078686587 8.226212951 8.19426979 8.156649214 8.12964763 8.17755567 8.696146153 8.0269338 32446261 gyrB other category gyrB Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 8.907378885 8.790391593 8.595045084 8.520442462 8.26490042 8.234418022 7.979232724 8.193242012 8.279691189 8.283204975 8.086880262 8.559481002 183984628 cspB Stress Cold shock Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 8.599520185 8.831721106 8.919865587 8.850043319 8.758099211 8.448448635 8.397624533 8.96735053 8.629234139 8.80807997 8.501740063 8.978044439 240139142 sox Sulphur Sulphur oxidation Methylobacterium extorquens AM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 8.890659647 8.709142703 8.278131293 8.906471907 8.744045436 8.88340495 8.829929396 8.774346547 8.486466942 253998516 iro virulence Methylovorus sp. SIP3-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylovorus; 8.766204671 8.419222674 8.526458359 8.66112962 8.156527428 7.892449038 8.571175359 8.596444657 8.522821825 8.311694456 8.074131158 26541551 MFS_antibiotic Antibiotic resistance transporter Streptomyces atroolivaceus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 9.348047467 9.221012229 9.289343038 8.532273041 8.481154613 8.416562887 8.826342796 8.562949048 8.964788483 8.343864484 8.531339222 8.505121597 218243015 glnA Stress Nitrogen limitation Thermus aquaticus Y51MC23 8.695271654 8.871391084 8.796390264 8.534661619 8.228028097 8.401977107 8.19728162 8.413008935 8.369781411 8.344450612 8.623178044 41399216 ZntA Metal Resistance Zinc Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 9.790241679 9.602715876 9.272798948 10.16223314 10.11648375 10.17857808 9.422756788 10.017055 9.30198034 9.780149321 9.932719198 9.461842596 167072912 amyA Carbon cycling Carbon degradation Starch Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.759070126 8.611399807 8.852096774 8.759124444 8.666148793 8.395017223 8.663352867 8.935168906 8.742672447 8.732800892 8.304230248 8.542198849 260459911 glnA Stress Nitrogen limitation Mesorhizobium opportunistum WSM2075 9.970985742 9.945309488 10.08381861 9.586487753 9.671452818 9.615601542 9.737829854 9.333614819 9.992202975 9.713676802 9.997078024 9.880911741 239517829 glnA Stress Nitrogen limitation Clostridiales bacterium 1_7_47_FAA 8.334296322 8.276088098 8.27970181 8.478594965 8.583664228 8.458400431 8.184808596 8.799882143 8.059217347 8.577548683 8.260824234 8.617340825 148259629 glycosyl_transferase_EPS Bioleaching EPS Acidiphilium cryptum JF-5 10.50136582 10.29158955 10.30000323 9.942978823 9.891085237 9.63659255 9.828429573 9.937149655 9.911970153 10.07643844 10.05079618 9.853543219 153011323 bclA Organic Remediation Aromatics Aromatic carboxylic acid Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 8.596753179 8.521472612 8.485397697 7.945615781 8.307371641 8.553129721 8.517611273 8.368180203 8.779936452 8.228887624 8.641421368 8.41359201 67087537 Arylest Organic Remediation Aromatics Other aromatics Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 8.494944971 8.70370062 7.714832417 7.701875733 7.943748224 8.147952447 7.518615305 7.618709143 7.367329134 7.762721066 46520013 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9.017155425 8.984371945 9.185354627 8.320714366 8.288497257 8.542414932 7.951767046 8.097109389 8.321602642 8.049624118 8.250208898 8.512865453 75908647 mer Metal Resistance Mercury Anabaena variabilis ATCC 29413 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena variabilis; 8.561035201 8.452286367 8.505028784 8.413014221 8.27689405 8.189347653 8.457830738 8.242550599 8.432665557 8.239981511 8.176189424 8.174197207 197931118 mdlD Organic Remediation Aromatics Other aromatics Streptomyces sviceus ATCC 29083 9.513615436 9.519925061 9.508341712 9.097486418 9.27344371 9.432173494 9.196370102 9.09679224 9.157155161 9.236930071 9.496691894 9.292754814 34391456 norB Nitrogen Denitrification Nitrosomonas marina superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 9.223023671 8.975708156 9.385494045 8.630131597 8.295330184 8.34974794 8.313099664 8.07614977 8.189016046 8.162153701 8.213782898 8.662526617 237718608 glnA Stress Nitrogen limitation Bacteroides sp. 2_2_4 7.932556251 7.982332474 7.036463548 7.117008552 24350485 pilin virulence pilin Shewanella oneidensis MR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella oneidensis; 8.66285712 8.823209672 9.052119971 8.464738537 8.50038109 8.648545347 8.230604029 8.240452374 8.313964034 8.268957918 8.3179742 8.709683511 120401356 TerC Metal Resistance Tellurium Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.306789467 8.217552234 8.363077359 7.872051488 8.515783669 8.721461051 8.650485278 8.405101708 8.092950309 8.026776039 8.205423317 154351195 katE Stress Oxygen stress Bacillus amyloliquefaciens FZB42 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 8.666372776 8.841436643 8.918728856 8.721823939 8.318242431 8.392315838 8.633734846 8.360443351 8.779771897 8.6148937 8.686004468 8.565943948 214044081 alkK Organic Remediation Others Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 9.806078104 9.181262959 9.559456297 9.116072799 9.02275311 8.759811813 8.990234204 9.106946482 9.022248473 9.095141488 9.036004458 9.003681732 44903459 pcpE Organic Remediation Herbicides related compound Sphingobium herbicidovorans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 9.171763472 8.897915011 8.716393955 9.185173649 9.323408933 9.086023732 8.750812187 9.44855562 8.800254808 9.209294486 9.234909673 9.386266771 146342325 exaA Organic Remediation Chlorinated solvents Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.807184538 7.54194768 8.00587561 8.117902067 7.827965517 7.660171366 7.926424161 209550108 nhh Organic Remediation Aromatics Nitoaromatics Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.94988832 8.929639537 8.942640355 8.945322627 8.848452164 8.550880977 8.563845035 9.160794483 8.933710373 9.048542597 8.858844842 9.036275405 146761192 fcbB Organic Remediation Aromatics Chlorinated aromatics Pseudomonas sp. CBS3 superkingdom:Bacteria;phylum:Proteobacteria; 8.516152709 8.237456269 8.560573708 9.238030697 9.130225315 8.851935975 8.580132761 9.477055678 8.605250744 8.978284999 8.685609666 9.126865843 116252599 catechol_B Organic Remediation Aromatics Other aromatics Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.790905345 8.650674077 8.775564928 8.937296388 8.786281289 8.682752454 8.662759681 9.080092821 9.039818577 9.242886048 9.177837269 9.192516622 156104506 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 9.179476083 9.309128077 9.347707819 9.489176153 9.532157016 9.15278137 9.390322376 9.774682344 9.356376118 9.718282192 9.255726952 259048570 major_capsid_protein Bacteria phage STRUCTURAL Pseudomonas phage LUZ7 order:Caudovirales;family:Podoviridae;genus:N4-like viruses; 8.143907638 8.167842426 7.634114117 7.135148523 7.484840148 7.33837032 7.327856446 7.440242426 7.498038404 7.545365439 257485337 iro virulence Pseudomonas syringae pv. tabaci ATCC 11528 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas amygdali; 8.974827606 8.476707854 8.505254216 8.938323061 8.23685292 7.755786891 8.829690231 8.937308354 8.443017209 8.328599052 8.172658564 16502039 pstB Stress Phosphate limitation Salmonella enterica subsp. enterica serovar Typhi 8.590844078 8.561995952 8.564657117 8.439601748 8.426402111 8.226483999 8.550341249 8.971995737 8.479943492 8.593076869 8.438522723 8.559660744 229469697 hly virulence hemolysin Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 8.478223678 8.365954811 8.202911716 7.912611208 7.717252561 8.080605534 8.363619074 8.05383393 8.196538202 7.880217808 7.891404132 8.086361533 66801865 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 8.940527217 8.983410176 9.013301802 8.883461885 8.955156626 8.760038929 8.53527887 8.992719442 8.583424686 8.813546489 9.012877172 8.577863823 253701452 cytochrome Energy process Energy process Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.700944647 8.501899597 8.451322057 8.216670733 7.910703949 7.989540305 7.966822535 8.197383002 7.986044842 8.08542853 8.001803474 8.003501124 99038360 pimF Organic Remediation Aromatics Aromatic carboxylic acid Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 9.185447389 9.112132849 9.280245948 8.31457824 8.01943525 8.197048259 7.905059308 8.085474892 7.922180655 8.300688649 167364645 ppx Phosphorus Phosphorus utilization Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.242946021 8.106851608 8.044594921 8.07732666 8.19229039 8.252369102 7.139692441 8.323398783 7.917933451 7.653680686 7.837132421 220907060 sigma_24 Stress Sigma factors Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.876936257 8.82876172 8.873010471 8.303594342 7.876111783 8.259386966 7.889820154 7.896844373 8.079129577 8.292108108 8.164713419 8.573547285 76056999 narG Nitrogen Denitrification uncultured bacterium 8.665512048 8.730817922 8.709420988 8.190873761 8.268926046 8.590653434 8.91427943 8.73427744 8.506970374 8.32217295 8.403458275 8.551431215 68200308 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.667766094 8.827786522 9.139313637 8.037705323 8.108708212 7.872352334 7.786788374 7.670418683 8.160354403 7.875593548 7.578288657 8.239137341 254819340 pstC Stress Phosphate limitation Mycobacterium intracellulare ATCC 13950 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 8.754945374 8.766025105 8.873576711 8.246675422 8.610188276 8.691810643 8.663668041 8.589640502 8.959608792 8.84192356 8.885076064 8.85996076 86166949 ZntA Metal Resistance Zinc Synechococcus sp. RS9917 8.98465648 9.160522263 9.283038234 8.759886764 8.691165818 8.641968625 8.850058313 8.603365683 8.932562391 8.650130865 8.727702376 8.569397749 239800364 katE Stress Oxygen stress Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 8.77000745 8.971804758 8.830419766 8.710918861 8.714397882 8.946928521 8.8437752 8.903183169 8.95176198 9.092349472 9.078405147 9.156555029 211957241 sox Sulphur Sulphur oxidation Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 8.342510144 8.117327326 8.394286609 7.393042013 7.524610382 7.502531766 7.31306006 7.034043949 7.181080824 7.698508742 7.264264483 7.811155005 237867588 ppk Phosphorus Phosphorus utilization Kingella oralis ATCC 51147 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Kingella;species:Kingella oralis; 8.280337247 8.345468094 8.400785908 7.39068601 7.911533541 8.475660107 7.077803417 7.623681947 7.358084215 7.550886818 7.82869 151578025 pcc Carbon cycling Carbon fixation Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.486279995 8.350509527 8.232230546 8.978678539 8.651276844 8.189174619 8.842954677 8.690309331 8.549841845 8.655949154 8.484242726 8.362588079 114541356 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.205267702 8.588724797 8.326860813 8.433975703 8.576682302 8.899132352 8.617773038 8.741566958 8.722512882 8.707392021 145574778 sigma_24 Stress Sigma factors Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 7.896368382 7.547895984 7.588189166 7.312176965 158109529 oxyR Stress Oxygen stress Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.477361341 8.927525999 8.56538063 7.9552155 8.962710592 9.24746274 8.872069357 8.734793268 8.74635726 8.726278896 8.948128346 91204460 alkK Organic Remediation Others Candidatus Kuenenia stuttgartiensis superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;genus:Candidatus Kuenenia; 9.22962842 9.038139431 9.238725974 8.542909454 8.329111835 8.33472603 7.991226439 7.661942174 8.163960081 7.997296294 8.507318911 255259615 pstA Stress Phosphate limitation Sideroxydans lithotrophicus ES-1 9.237201098 9.102519759 9.265748849 9.509701317 9.669537853 9.503076885 9.301841442 9.778739141 9.355521472 9.450951911 9.506120068 9.549387297 294671 atzA Organic Remediation Herbicides related compound 8.309028173 8.229807879 8.277167108 8.484961795 8.266970961 8.015506548 8.15720308 8.304273025 8.244956376 7.986632526 7.950973942 7.9108422 187928930 CopA Metal Resistance Copper Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 9.209365756 9.123815331 9.063295993 9.314604357 8.918966613 8.622549702 9.164417731 9.157756484 8.93680224 9.168565313 9.331504937 8.776549994 167644183 katE Stress Oxygen stress Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.235230009 8.460657747 8.876639216 8.011474574 7.913036339 8.329930603 8.491519995 7.887610909 8.884358703 7.930372833 7.814597316 8.096089122 116612780 Catechol Organic Remediation Aromatics Other aromatics Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8.059513125 8.342616043 8.473808794 8.373407522 8.294045353 8.202235326 8.480427118 8.656776799 8.644895659 8.637409646 8.269459642 8.436899447 219690735 toxin virulence toxin Haemophilus parasuis SH0165 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus parasuis; 8.07259163 8.289557371 7.99884213 7.872841247 7.511998236 7.530636846 7.367242545 7.140095459 7.782488951 7.513998569 7.296212806 7.643199414 145097 hydrogenase Energy process Energy process superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 8.365909825 8.511540352 8.241543877 8.134237165 7.997200924 8.098613611 7.935452728 8.090453447 7.991964761 8.045802105 8.183995318 8.082179296 157285559 narG Nitrogen Denitrification uncultured bacterium 8.704054079 8.500437186 8.522498737 8.306253282 8.285328342 8.142797485 8.329283155 8.176363763 8.209002387 8.171712183 8.163176879 8.412832689 118472423 dnaK Stress Heat shock Mycobacterium smegmatis str. MC2 155 9.269237588 8.926283581 9.270277041 8.41606017 8.607586415 8.63340942 9.004951597 8.433711466 9.037373853 8.646795632 8.651641772 8.603066282 32170802 gyrB other category gyrB Sphingomonas elodea superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 9.321143089 9.074813088 9.119672815 8.63780182 8.667801392 8.645806154 8.687481899 8.773671571 8.725074075 8.625080861 8.879000999 8.89257942 158331619 pstB Stress Phosphate limitation Azorhizobium caulinodans ORS 571 8.761552924 8.546257505 8.590233281 8.552268992 8.391645571 8.325743777 8.62949828 8.623230776 8.572543494 8.471808976 8.267296342 8.460394419 29340410 ara Carbon cycling Carbon degradation Hemicellulose Bacteroides thetaiotaomicron VPI-5482 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides thetaiotaomicron; 9.236520638 9.331343765 9.446743214 8.513368628 8.40308999 8.563673496 8.20931842 8.085729775 8.180756565 8.156888958 8.588431438 209519708 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.435009004 8.104741039 7.984217217 7.746144438 7.713522612 7.538610218 7.828817015 8.01990501 8.03212874 7.743075908 7.791354628 167349245 glnA Stress Nitrogen limitation Caulobacter sp. K31 8.49130542 8.727032703 8.665769694 8.129478566 8.846734108 8.950879363 8.985922426 8.905080305 8.534302271 8.819737461 8.594471865 157321962 BADH Organic Remediation Aromatics Other aromatics Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 8.70419161 8.651873564 8.772195335 8.693472889 8.366484875 8.020176634 8.420666018 8.30513016 8.365952377 8.347822461 8.392893509 66044063 TerD Metal Resistance Tellurium Pseudomonas syringae pv. syringae B728a 8.368395849 8.435344995 8.29380759 8.585214724 8.458060114 8.108669483 8.008586689 8.526116628 8.308405783 8.135768934 8.285043041 8.235722482 194539069 cda Carbon cycling Carbon degradation Starch Vibrio sp. Ex25 9.159137036 8.362427418 8.080844426 8.455876555 8.231796379 8.240741641 8.175147264 8.36610287 7.950374469 8.498756582 8.344823474 8.607741882 254512359 pstB Stress Phosphate limitation Rhodobacteraceae bacterium KLH11 8.250046117 8.42939501 8.507305828 7.975328873 8.127041887 7.794995779 7.78317869 7.645860557 8.367673339 8.046691267 7.685671304 7.896903493 117621305 hly virulence hemolysin Aeromonas hydrophila subsp. hydrophila ATCC 7966 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas hydrophila; 9.098731912 9.002239059 8.927989155 8.946614625 8.738786708 8.797706305 8.814774512 8.90231569 8.984582543 9.171331732 9.102559831 8.966427225 118589430 obgE Stress Radiation stress Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 9.428783656 9.627036933 9.327016415 9.147804711 9.187564236 8.807109317 9.091004016 9.254057165 9.296991039 9.226726636 9.147346525 9.280954833 190696714 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 9.433677255 9.056620727 9.1151782 9.036990886 9.036261561 8.776755547 9.103637959 8.937119636 8.88659887 8.985547822 9.091074225 8.854608899 170694698 mer Metal Resistance Mercury Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 9.048176477 9.257148435 8.842543681 8.896917887 8.690154607 8.772202194 8.838418236 8.815700452 8.862876839 9.007117059 9.115308412 8.986895627 88791236 katE Stress Oxygen stress Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 7.002434473 6.971701408 7.62002283 7.449129024 7.511783041 7.433510285 160917496 narG Nitrogen Denitrification uncultured bacterium 8.539270597 8.596918726 8.198848309 7.814347543 8.181372722 8.002650085 7.725999425 8.065673966 8.197764378 7.936620648 8.06411346 197932924 pulA Carbon cycling Carbon degradation Starch Streptomyces sviceus ATCC 29083 9.171414661 9.447203731 9.206440962 8.927647534 9.118708757 9.264848385 9.564409547 9.347851168 9.404053588 8.99919928 9.024758198 9.011570036 55378283 pstB Stress Phosphate limitation Haloarcula marismortui ATCC 43049 9.482855825 9.574728479 9.310133717 9.807139546 10.2816317 9.866064871 10.14400777 9.898760342 9.67588437 10.05888134 9.554445451 88774780 ureC Nitrogen Ammonification Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 8.409555235 8.801903497 8.734791851 8.018140509 7.621215188 7.902970495 7.415668757 7.218772059 7.931524136 7.926371194 7.764357129 7.949155239 37703775 phenol_oxidase Carbon cycling Carbon degradation Lignin Coprinopsis cinerea superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis; 8.724084486 8.603212608 8.783035712 8.27150602 8.305720357 8.291709155 8.167066955 8.142190449 8.515247051 8.068443601 8.103367329 8.288627295 3985984 gyrB other category gyrB Nitrosomonas sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 8.434923278 8.5512461 8.633690253 8.141703748 8.035930402 8.048788553 7.623489744 7.295837375 8.169640016 7.755607119 7.495825455 7.870750664 120326688 phn Organic Remediation Herbicides related compound Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 9.27561896 9.007454373 8.930987899 8.235965673 8.240630999 8.457251569 8.32370879 8.164265562 8.752401128 8.478144815 8.467524162 8.670427057 269211903 pcc Carbon cycling Carbon fixation Actinomyces sp. oral taxon 848 str. F0332 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 848; 8.373707463 8.312445238 7.928036701 7.780288315 8.162217248 7.817973105 7.866988317 7.927708936 7.68456672 119671725 exaA Organic Remediation Chlorinated solvents Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 9.846029176 9.83437438 9.94238167 9.218316075 8.918495441 9.080948462 9.230328622 8.959066972 8.938622485 9.032094286 8.984229178 9.300635874 19774218 dsrB Sulphur sulfite reductase Desulfovibrio aespoeensis superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 8.375244075 8.393887777 8.066473472 7.529033482 7.763699603 7.589189788 7.763378894 7.720090834 7.944699973 7.900280663 7.811961034 7.890046581 89512486 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.192360596 8.319689723 8.197497723 8.023299387 8.000025438 8.100120431 8.294729802 8.139790679 8.349068815 8.027236509 8.073657373 8.057345478 78358749 cytochrome Energy process Energy process Desulfovibrio desulfuricans G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 8.142289292 8.143409603 8.536602248 8.23137509 8.25230036 8.48911918 8.405944406 8.188759033 8.435009016 8.339356804 8.046587938 15644200 sigma_70 Stress Sigma factors Thermotoga maritima MSB8 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga;species:Thermotoga maritima; 8.122802769 8.458883078 8.170399434 7.707961682 7.965846732 8.404083326 7.661610445 7.900301589 7.977335392 116609781 iro virulence Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8.818480671 8.469158169 8.342306363 8.951348878 8.480606044 8.294442909 8.759264 8.641642323 8.527097982 8.593196128 8.280271359 118062629 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 7.651391306 7.855114163 7.200365534 7.893411763 7.854695958 7.995231976 7.601148373 227874771 hrcA Stress Heat shock Mobiluncus mulieris ATCC 35243 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus mulieris; 8.022564985 8.665509893 8.490028137 7.838727956 7.741029333 7.692655825 7.69910077 7.656446877 7.784801771 7.753389811 7.736060965 7.838670441 68262963 clpC Stress Protein stress Corynebacterium jeikeium K411 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 8.904303624 8.872104418 8.798540674 8.379457988 8.380954129 8.550721123 8.696128954 8.549451625 8.590864889 8.580265022 8.565073108 8.543228337 163758366 ppx Phosphorus Phosphorus utilization Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 8.77901721 8.615661321 8.930693322 8.44239193 8.279228109 8.140270719 8.263153372 8.64341035 8.464197577 8.498771139 8.37604731 8.604815562 241765338 fnr Stress Oxygen stress Acidovorax delafieldii 2AN 8.578682494 8.918018308 8.539692935 8.481485576 8.431960388 8.757405894 8.851609531 9.24790625 8.725515809 9.423375861 9.213321496 8.897984608 71916874 pstB Stress Phosphate limitation Thermobifida fusca YX 9.649651204 9.459628934 9.595439515 8.846283661 8.84489407 8.571285241 8.826527072 8.482980064 8.542480212 8.750821043 8.694898724 9.053117877 4106534 lip Carbon cycling Carbon degradation Lignin Trametes versicolor 8.079379262 8.090629244 7.723867632 7.786758733 7.942032708 7.714377373 8.241813417 7.893075737 7.959315356 8.234133594 7.831596976 169240669 obgE Stress Radiation stress Mycobacterium abscessus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 10.85945234 10.80893331 10.7636459 11.22723515 10.86439722 10.55235225 10.95744816 10.62482745 11.06456605 11.17243607 10.96676992 10.67006934 148264066 linB Organic Remediation Pesticides related compound Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 8.930811406 9.094582428 9.133076868 8.482066914 8.452395144 8.460401361 8.486410901 8.324018862 8.437133254 8.397623474 8.669424862 189425711 narI Stress Oxygen limitation Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 8.673184865 8.588668173 8.941475256 8.344372857 8.367190246 8.51116011 256008915 B_lactamase_C Antibiotic resistance Beta-lactamases Acidimicrobium ferrooxidans DSM 10331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Acidimicrobiales;family:Acidimicrobiaceae;genus:Acidimicrobium;species:Acidimicrobium ferrooxidans; 8.983493205 8.685590549 9.086399739 9.077238189 9.036818388 8.531732144 9.468638167 8.728671789 8.971640868 9.113031197 9.264260071 147847617 sigma_70 Stress Sigma factors Synechococcus sp. WH 7803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.426988011 8.03511507 8.365336443 8.492172121 8.373887771 8.098437757 8.129780708 8.446951133 8.291889664 8.155658406 7.969694976 7.939318582 158521467 pimF Organic Remediation Aromatics Aromatic carboxylic acid Desulfococcus oleovorans Hxd3 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus;species:Desulfococcus oleovorans; 8.61104798 8.574355899 8.427190388 7.880368232 8.166515137 8.129496639 8.369610423 8.073842178 8.404167589 8.006398701 8.09546825 8.116998172 85060397 pstC Stress Phosphate limitation Sodalis glossinidius str. 'morsitans' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Sodalis;species:Sodalis glossinidius; 8.706363482 9.12765735 8.785404289 9.127589137 9.117335686 8.836383844 9.394710434 9.394385854 9.175025886 9.345150857 9.243995297 8.553578305 209503632 bphA Organic Remediation Aromatics Polycyclic aromatics Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.422484648 8.283293732 8.342640387 7.751813498 7.472348663 7.761741546 7.907969788 7.681443897 8.144811639 8.008616234 8.055764627 7.86054085 150029091 fnr Stress Oxygen stress Sinorhizobium medicae WSM419 8.883000802 8.746786072 8.362854651 8.277662385 7.82806739 8.677253866 8.432201801 8.258969564 8.404075603 8.218906001 117164621 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Streptomyces ambofaciens ATCC 23877 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ambofaciens; 8.541715826 8.692106608 8.874030821 8.92161533 8.825701934 8.356545502 8.998186625 8.582804459 8.745289874 8.582740033 8.727761405 167624832 nrfA Nitrogen Dissimilatory N reduction Shewanella halifaxensis HAW-EB4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella halifaxensis; 8.374825374 8.155336861 8.302863632 8.163210302 8.065365956 7.937671348 8.033266275 8.281346899 8.28654759 8.215393664 8.059900374 8.064304026 254498211 fnr Stress Oxygen stress Legionella drancourtii LLAP12 7.159274104 6.943013113 160866990 arcA Stress Oxygen limitation "Salmonella enterica subsp. arizonae serovar 62:z4,z23:--" superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 8.946959222 8.468193593 8.476999923 9.255646648 8.945680142 8.675930185 9.059974015 9.113811101 8.700672759 8.8248095 9.020516267 8.494282858 195542017 fnr Stress Oxygen stress uncultured bacterium 1114 8.850172164 8.872642022 8.541457795 8.866376544 9.096150588 9.320560734 9.180640845 9.347341951 9.156824689 9.112629561 9.448652896 9.121565149 49613597 amyA Carbon cycling Carbon degradation Starch Erwinia carotovora subsp. atroseptica SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 8.488701117 8.438295796 8.439551928 8.530533511 8.638067258 8.262671061 8.282511543 8.118581472 8.367086517 8.421108677 8.612176216 8.426036633 3845548 pheA Organic Remediation Aromatics Other aromatics Comamonas testosteroni superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 8.996293706 8.958191223 8.770813573 8.16535731 8.92401984 8.980289737 9.335679603 8.107060799 9.283513074 8.508235931 8.671524656 9.153769153 262275369 hly virulence hemolysin Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;species:Grimontia hollisae; 8.579929054 8.667465266 8.640188997 8.27260557 8.07861143 8.148866648 7.948519033 7.768896535 8.227953626 8.001058883 7.698963413 8.013827881 258587775 pilin virulence pilin Vibrio mimicus VM573 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 9.310860339 9.08927727 9.237410076 8.372078846 8.429709539 8.541586798 8.406859752 8.194492801 8.294706709 8.201796798 8.199616212 8.645982643 34017052 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 7.451287068 7.690983128 7.677288914 7.604255944 7.647959652 91686232 cmtAb Organic Remediation Aromatics Other aromatics Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.65869189 8.205536785 8.008121901 8.466318937 8.500224492 8.764684465 8.387172551 8.533305091 8.806703883 8.234423079 8.740432231 8.319084535 16264857 NirB Nitrogen Assimilatory N reduction Sinorhizobium meliloti 1021 8.348388227 8.165415301 8.381207182 7.885443667 7.998196428 8.060123366 8.098212819 7.916708075 7.774308427 8.089890446 7.864360065 219677641 czcA Metal Resistance "Cadmium,Cobalt,Zinc" gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.453287513 8.214264654 8.5557118 8.234964309 7.940801152 7.745577617 8.139008037 7.897072398 7.608752162 8.083751151 7.833696235 167571979 glnA Stress Nitrogen limitation Burkholderia oklahomensis C6786 8.415350463 8.156539261 8.454269449 8.251301902 7.957900522 7.662696158 7.913498067 8.200555042 8.34873748 8.10887346 8.339752829 7.817404554 222437859 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 10.42978694 10.26466428 10.40076869 9.68665358 9.568184038 9.57701699 9.463019757 9.415921403 9.388304714 9.437469242 9.522511982 9.929517055 238059464 glnA Stress Nitrogen limitation Micromonospora sp. ATCC 39149 9.206631471 9.110062262 9.474679128 9.268139518 9.20250705 9.019118814 9.166611744 9.19556374 9.37973821 9.32787406 9.450058166 9.148075288 148260113 NADH_quinone_oxidoreductase Bioleaching Electron transport Acidiphilium cryptum JF-5 8.058389485 8.441057518 8.298207294 8.175875157 8.13313074 8.526493937 8.532196166 8.294376976 8.51830722 8.380986111 8.187422613 116633916 narG Nitrogen Denitrification uncultured bacterium 8.621324432 8.476774681 8.645314946 8.059895534 7.976700323 7.758863762 8.10617078 8.055468867 8.29631664 8.391487235 8.317256955 8.30242305 193873609 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium superkingdom:Bacteria; 8.292865554 8.078035876 8.314347473 8.617932446 8.341373031 8.107765204 8.083370505 7.946793832 8.133135459 8.075261857 7.584573924 7.898453927 21902153 MFS_antibiotic Antibiotic resistance transporter Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 9.481457033 9.574669815 9.428876801 9.011858252 8.779575689 8.996465837 8.651641343 8.59481253 8.662761676 8.696559087 8.968534887 9.024559706 169760402 atzC Organic Remediation Herbicides related compound Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.665433766 8.254312604 8.645833725 8.344229519 8.293017805 8.252931369 8.287568943 8.056599972 8.47067712 8.093612941 8.079588991 8.275847616 78093558 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.795189704 8.586691011 8.589596604 8.155046405 8.473939696 8.697575815 8.515936279 8.707831352 8.702422085 8.786179565 8.843885208 8.581518532 27349072 gyrB other category gyrB Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.300798186 8.250217759 7.556583084 7.633731841 8.164428052 8.243752604 7.949006431 8.14389843 7.829397204 7.541874619 8.044401037 194100397 major_capsid_protein Bacteria phage STRUCTURAL Enterobacteria phage 13a order:Caudovirales;family:Podoviridae;genus:T7-like viruses; 8.638657741 8.884832228 8.937977233 8.22576515 8.54128426 8.553944849 8.52822638 8.744507048 8.624165503 8.82695501 8.70536042 8.222900459 88191351 arsB Metal Resistance Arsenic Campylobacter jejuni subsp. jejuni 84-25 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter jejuni; 8.329363981 8.559926441 8.426187962 8.010953713 8.008330447 7.957174618 7.667161635 7.404401612 8.015109367 7.386313091 7.642339145 8.000811494 29466090 norB Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.524534966 8.440808229 8.138468019 7.815074343 8.148396153 7.986932499 7.881063158 8.158800026 7.995477653 8.009319896 8.171400595 114552065 grpE Stress Heat shock Mariprofundus ferrooxydans PV-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Zetaproteobacteria;order:Mariprofundales;family:Mariprofundaceae;genus:Mariprofundus;species:Mariprofundus ferrooxydans; 8.561511172 8.277780651 7.604182025 7.962145224 8.080394208 7.738255714 8.21285381 8.609185149 8.187373533 90426128 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.51624757 8.407906238 8.400730268 8.560679961 8.206912614 8.281010775 8.657624905 8.568315813 8.29947074 8.430731348 8.552310037 8.12289856 114340211 sigma_24 Stress Sigma factors Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 8.694352784 8.369837856 8.205426184 8.35857213 8.260170933 8.184204028 8.602634102 8.361782493 8.389990544 8.152229478 8.375537255 187926096 Arylest Organic Remediation Aromatics Other aromatics Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.415734997 9.065773879 8.861261287 8.879855829 9.028390156 8.913476732 9.181856002 9.471642845 9.201947463 9.588285647 9.387635145 9.231586653 149124613 exaA Organic Remediation Chlorinated solvents Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 9.11684048 9.266214523 9.392356317 8.914386095 8.914094779 8.503729061 8.794191683 9.02663928 8.930211354 9.068234338 9.028676702 8.932362739 86748033 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.505850388 9.07655632 9.312069252 9.26527019 9.224929456 8.912054709 9.083274532 9.655636015 8.845101363 9.434994998 9.079163428 9.444171711 71556311 TerD Metal Resistance Tellurium Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 9.966282755 9.795981854 10.26715043 9.606954067 9.650747832 9.409389676 9.682018291 9.896760604 10.01733741 10.06675087 9.933167004 10.15155611 149811120 mer Metal Resistance Mercury Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.503297977 8.644393216 8.739723657 8.405340118 8.671546139 8.418612785 8.282162047 8.783742847 8.357683797 8.627687244 8.5342793 8.454756545 118431399 narH Stress Oxygen limitation Aeropyrum pernix K1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Aeropyrum;species:Aeropyrum pernix; 9.658176186 9.841570431 9.597808093 9.333819728 9.752119807 9.772232923 9.712363997 10.19087641 9.580578513 10.05299714 10.22776873 10.17232722 71906694 iro virulence Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 8.746349402 8.371277444 8.731827715 8.460850246 8.273802436 8.189091021 8.106798547 8.60145564 8.165512799 8.422835881 8.302488553 8.417703216 139478573 mer Metal Resistance Mercury uncultured soil bacterium superkingdom:Bacteria; 8.474975744 8.693670947 8.634416881 7.889905288 8.120489848 8.118714358 8.228889807 7.995299741 8.730552508 8.01680488 7.586805092 8.103609689 241763908 fnr Stress Oxygen stress Acidovorax delafieldii 2AN 7.995024818 8.291422069 7.457125702 7.336327411 7.837143971 7.990801539 7.443515232 7.651787745 7.879218424 163731468 pstB Stress Phosphate limitation Roseobacter litoralis Och 149 8.83078885 8.808504228 8.686375311 8.384356832 8.314399357 8.22497074 8.357098909 7.952730545 8.402452515 8.086823827 8.167466941 8.308576368 261877676 hrcA Stress Heat shock Selenomonas noxia ATCC 43541 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas noxia; 8.690301843 8.642296279 9.036809541 187483925 cellobiase Carbon cycling Carbon degradation Cellulose Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 8.930090639 9.063194066 8.830278017 8.50441307 8.486557088 8.669612419 8.783356561 8.707216405 8.479307757 8.583616366 8.509849705 8.641701392 85110024 nitA Organic Remediation Aromatics Other aromatics Neurospora crassa OR74A] superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 9.919802401 9.9244849 9.825155707 9.511901477 9.179391719 9.647133217 9.995919131 10.16316221 9.431285195 9.833463142 9.648274903 9.953910687 192361066 dnaK Stress Heat shock Cellvibrio japonicus Ueda107 10.56303677 10.50050392 10.68948055 9.710984947 9.474734764 9.750912634 9.672571739 10.24624116 9.749872657 9.799132761 9.81285843 118473805 nmoA Organic Remediation Aromatics Nitoaromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.538706644 8.683235468 8.833265356 8.131644854 8.180208332 8.449832458 8.493349187 8.328037294 8.705321242 8.159151674 8.112037408 8.215541725 109632807 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.487639048 9.510414527 9.345353727 8.797521942 8.857256909 9.095958186 9.420433356 9.197564564 8.845975021 8.978606513 9.009958484 9.073997613 221633904 amyA Carbon cycling Carbon degradation Starch Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 9.442507844 8.957297484 8.972301015 8.447306176 8.404869359 8.282201313 8.325545933 8.233933096 8.423373026 8.209876308 8.188782978 8.362830882 24984794 Catechol Organic Remediation Aromatics Other aromatics Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.969688406 8.740936573 8.678044888 9.306338658 9.046589432 8.95157089 9.01183344 9.20795965 8.836471464 8.925367453 8.947422591 8.578297682 28805643 pilin virulence pilin Vibrio parahaemolyticus RIMD 2210633 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 8.726482642 8.449976574 8.517608485 7.800578021 8.026174678 8.18757295 7.717797835 7.766615928 7.911442322 7.674790545 7.609084479 8.147799403 222451840 pstC Stress Phosphate limitation Halorubrum lacusprofundi ATCC 49239 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 8.218191403 8.069551317 8.231638033 8.43562019 8.93662199 8.758267399 8.346193002 9.024288377 8.392671186 8.761676746 8.74306682 9.105675713 169813020 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 9.089994062 8.812550488 8.765679297 8.228457038 8.147498759 8.293751162 8.186841297 7.935948287 8.397935261 8.01267748 8.020206203 8.511415138 83571795 gyrB other category gyrB Moorella thermoacetica ATCC 39073 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Moorella;species:Moorella thermoacetica; 9.540283197 9.566736799 9.523309861 9.401720737 9.359388491 9.2635261 9.24022734 9.478625832 9.458810663 9.736816186 9.739377838 9.545838435 225168111 gyrB other category gyrB Dethiobacter alkaliphilus AHT 1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Syntrophomonadaceae;genus:Dethiobacter;species:Dethiobacter alkaliphilus; 9.893677078 9.824674606 9.886529561 9.612875721 9.283398034 9.968668246 10.28416928 9.903018081 10.28920781 9.97521413 10.23086728 10.37903406 118027568 ChrA Metal Resistance Chromium Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 9.432315412 9.480241311 9.398700458 9.41861566 9.43732358 9.261922003 9.476224996 9.559478946 9.356320424 9.553055374 9.342061866 8.761891689 153005350 cytochrome Energy process Energy process Anaeromyxobacter sp. Fw109-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 8.484549421 8.51620436 8.382774833 9.005220543 8.684641117 8.237421855 8.973745596 8.999335067 8.579337263 8.417685031 8.400428136 91807172 nosZ Nitrogen Denitrification uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 9.020411475 8.83823147 9.003504275 9.318520879 8.870453332 8.547006336 8.812446051 8.909046967 8.896822737 9.016884292 9.232481395 8.529151506 146337804 nagI Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 9.263470563 9.363177156 9.523979254 8.981072324 8.784490453 8.687283229 8.557075148 8.708918931 8.611757463 8.832950574 8.766431 8.955806787 219952182 phtA Organic Remediation Aromatics Aromatic carboxylic acid Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 8.967657518 9.142825252 8.936269743 9.126576861 9.07227577 8.809410998 9.44045241 9.064583798 8.988429529 9.187851898 9.132964415 9.226174744 158425420 nhh Organic Remediation Aromatics Nitoaromatics Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 8.555754133 8.21048886 8.205393686 8.236029272 8.254716819 8.144966056 7.670532402 8.485664793 8.326135516 8.452246792 7.960288202 26278876 narG Nitrogen Denitrification uncultured bacterium 8.695826517 8.756358762 8.423509912 8.737028038 8.67934905 8.402416699 8.924641191 8.775881591 8.661870123 8.911777384 8.946265573 8.146363361 78516810 ureC Nitrogen Ammonification Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 9.457308334 9.385620723 9.405028357 8.743748954 8.710388905 8.902783171 8.740570754 8.470042786 8.77519262 8.738025034 8.727868227 8.922230683 23015177 cap virulence capsule Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 8.316563922 8.228000477 8.61109184 8.174504851 8.678459584 7.817154041 8.452333985 7.947489211 8.347900252 8.51642759 8.032283364 27379080 ppx Phosphorus Phosphorus utilization Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.277293932 7.809939374 7.654406404 7.976106951 7.709829574 8.044022497 7.939641144 7.708405715 7.656705897 87122607 AceA Carbon cycling Carbon degradation others Marinomonas sp. MED121 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 7.226447649 7.341344582 7.558639504 7.472772604 7.491038531 7.949583853 7.183956736 7.361373646 83954038 ppx Phosphorus Phosphorus utilization Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 8.557272372 8.618818868 8.579501561 8.56962152 8.437532426 8.462695289 8.306898198 8.743712284 8.355203798 8.55097436 8.624780752 8.2090137 62424587 AceB Carbon cycling Carbon degradation others Brevibacterium linens BL2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium linens; 8.588766132 8.682797557 8.530145898 7.812554876 7.880135832 8.2449306 8.573662957 8.189054687 8.791898413 8.066074433 7.966741611 8.180513583 110168569 cap virulence capsule Trichodesmium erythraeum IMS101 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Trichodesmium;species:Trichodesmium erythraeum; 8.949227332 9.047482414 9.106214842 8.458839681 8.218891071 8.466439768 8.118211654 8.210164808 8.223940374 8.427603572 8.440050277 8.654438204 146402360 ATP_synthase_F1_or_F0 Bioleaching other category Acidiphilium cryptum JF-5 8.413810662 7.992989034 8.410910526 8.180104787 8.132591973 7.675344909 7.903028498 7.983559905 8.190484894 8.297504233 8.248449048 7.669953148 72163275 clpC Stress Protein stress Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 8.54450089 8.788564726 8.739353785 8.887190526 8.794353443 8.528151587 8.726796189 8.803821172 8.756006144 8.717335329 8.684904274 8.883398808 52139921 terminase_small_subunit Bacteria phage REPLICATION Enterobacteria phage JS98 order:Caudovirales;family:Myoviridae;genus:T4-like viruses;species:Enterobacteria phage JS; 8.764707875 8.719522055 8.724063456 8.395029102 8.152553796 8.117915446 7.949169462 8.08079647 8.151050398 8.164343344 8.096822703 8.365397053 118048274 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 9.381362431 9.442265114 9.571000019 8.939725623 8.987749195 8.731440146 8.622747231 8.844130198 8.759256939 9.095522432 9.224886872 9.195925981 226241603 sigma_24 Stress Sigma factors Rhodococcus opacus B4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 8.560498532 8.711197978 8.519379808 8.421528999 8.477136937 8.264058608 8.431918884 8.645591164 8.380933718 8.744018161 8.556674864 8.479057758 82940331 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9.142051294 9.05471605 9.322760646 8.76969892 8.758586336 8.651597701 8.500348055 8.739259951 8.829346845 8.810935105 8.63975731 8.87139136 157963750 cytochrome Energy process Energy process Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 8.930811406 9.023065338 9.13379402 8.593813135 8.547113314 8.450657592 8.398096668 8.58966151 8.398784588 8.551460312 8.520539083 8.777302517 6911973 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.953431773 8.523180006 8.555132162 9.035526223 8.977372778 8.845638886 9.081655093 8.895305547 8.882173063 8.58911758 8.671690556 8.401724224 119951935 nhh Organic Remediation Aromatics Nitoaromatics Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 8.404884156 8.251655065 7.716075541 7.843746664 7.843561745 7.423242518 7.792514191 7.953964346 7.878333576 7.724606984 226243761 bphF1 Organic Remediation Aromatics Polycyclic aromatics Rhodococcus opacus B4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 8.785649231 8.840351454 9.033514738 8.411875148 9.107595755 9.293290315 8.988271483 9.261390917 8.724873462 8.685312521 8.788789208 160944954 hrcA Stress Heat shock Faecalibacterium prausnitzii M21/2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Faecalibacterium;species:Faecalibacterium prausnitzii; 8.385654375 7.889113108 7.503892953 7.574870225 7.905284123 7.664910938 7.492006125 8.085507199 7.671609568 7.532476688 7.462012318 140845791 TerC Metal Resistance Tellurium Corynebacterium glutamicum R superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 7.856936621 7.828933248 8.016540877 6.975752886 7.945005346 7.481557861 7.536061237 7.811113789 7.974871086 88812720 TerD Metal Resistance Tellurium Nitrococcus mobilis Nb-231 9.194204996 8.946939994 9.127383717 9.206508185 9.031830423 9.134864347 8.929522224 8.896092779 9.565397692 8.88098259 9.115439326 8.686212278 108467099 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 8.366947173 8.756778922 8.926061729 8.374392739 8.588268569 8.412764037 8.517937995 8.720355907 8.625614669 8.75583576 8.63071608 8.458515019 218762338 pilin virulence pilin Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 8.560793327 8.521775306 8.646392074 8.035793331 7.89951122 8.062107106 7.764119402 7.59878435 8.071063377 7.827157261 7.824277333 7.942533333 78224712 cap virulence capsule Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 8.181131577 8.028098611 8.19752045 7.412443879 7.42816187 7.505546668 7.74563963 7.239986447 7.634130538 7.131836206 7.05981573 7.433641134 253700413 B_lactamase_C Antibiotic resistance Beta-lactamases Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.746744875 8.958417242 8.614640392 8.083832337 8.417522012 8.565557502 8.990793377 7.930453522 8.978277278 8.29592382 8.151254544 8.295342428 144898235 fnr Stress Oxygen stress Magnetospirillum gryphiswaldense MSR-1 8.024673237 8.151195039 7.995678673 7.273703893 7.369760048 7.693689646 7.797328468 6.986038514 7.331323413 7.45497047 7.637063154 149811766 BchY other category chlorophyllide reductase Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.589981859 8.278514351 8.475831301 8.223389246 8.019818754 7.922989467 7.586115368 7.792828891 7.81769796 7.980708535 7.900633503 8.042455863 94554604 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 9.424529031 9.421880363 9.59184934 8.869439977 8.80332653 8.781279801 8.682699378 8.478236673 8.748675145 8.844211417 8.977765077 9.125747772 145230746 tftH Organic Remediation Aromatics Chlorinated aromatics Aspergillus niger 8.517578316 8.574489905 7.948628847 8.357329506 8.552290853 7.980784214 8.429138593 8.392240968 8.194790249 8.571570593 8.033080722 72494416 phoA Stress Phosphate limitation Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus saprophyticus; 9.060973303 9.318082761 9.357047787 8.489033631 8.238191999 8.298382682 8.047245502 8.073248718 8.270269674 8.280690573 8.304789042 8.577550123 6179922 dsrB Sulphur sulfite reductase Solar Lake Mat Clone9065 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 8.473822038 8.562079942 8.497123225 8.665583507 8.541235842 7.941868211 8.576813337 8.525407896 8.203800977 8.350896008 8.140447599 8.1232372 157679455 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.439388184 8.544451037 7.769140349 7.934046745 8.364155716 8.708015975 8.011143943 7.877835714 7.760281077 7.665218527 7.880233767 72163247 CopA Metal Resistance Copper Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 8.713928118 8.444142335 8.536771258 8.282568714 8.181597901 8.46726562 8.124463294 8.345068159 8.233199889 8.242707227 219965691 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.016317643 7.911264994 8.215505851 7.5780831 7.621997469 7.446732196 7.18036207 7.433855469 7.52205862 40787174 phn Organic Remediation Herbicides related compound Pseudomonas stutzeri superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.466679474 6.897034649 7.469698206 6.914282981 7.411666478 26278894 narG Nitrogen Denitrification uncultured bacterium 8.070779573 8.03597909 7.470177288 6.997528642 7.344737112 7.619753312 228307501 obgE Stress Radiation stress Porphyromonas uenonis 60-3 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas;species:Porphyromonas uenonis; 8.186223312 8.519640994 8.493087228 8.488956707 8.28002799 8.231397544 8.588775635 8.591185494 8.724162683 8.140431382 8.254601645 221536031 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 8.603337729 8.854425614 8.571423406 8.948274249 8.946708594 8.75959676 8.963451732 9.649795945 8.980305149 9.520947992 9.480117829 9.377507419 241365376 AceB Carbon cycling Carbon degradation others Acidovorax delafieldii 2AN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax delafieldii; 8.543540077 8.750302967 8.208936717 9.07242682 8.946579291 8.66325823 9.140131951 9.063282711 8.871889261 8.969049374 8.60291365 8.465314974 91777987 tfdA Organic Remediation Aromatics Chlorinated aromatics Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 9.507388574 9.259434739 9.262622064 9.236085271 9.218530688 9.248541917 9.192104029 9.207936198 9.309839283 9.581115196 9.707130631 9.544072603 256765208 B_lactamase_C Antibiotic resistance Beta-lactamases Streptomyces sp. C superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.852043662 8.760064838 8.864280062 8.718962684 8.619254381 8.69018907 8.341320893 8.693713969 8.401266207 8.457073969 8.55494279 8.766968524 140713899 nasA Nitrogen Assimilatory N reduction uncultured marine bacterium superkingdom:Bacteria; 9.202247349 9.447534243 9.18167705 9.544871657 9.485396599 9.090492219 9.579435023 9.395580512 9.117461724 9.451613904 9.176218743 9.218607748 33640924 rubisco Carbon cycling Carbon fixation Prochlorococcus marinus str. MIT 9313 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 9.297877182 9.409702236 9.426207987 8.568525608 8.6548401 8.520355518 8.712545511 8.457304341 8.640067991 8.475716151 8.523104079 8.731243368 255108604 fnr Stress Oxygen stress Sideroxydans lithotrophicus ES-1 8.660171201 8.272306089 8.694595464 8.083795161 7.763980058 8.039247608 8.174816655 7.855357884 8.1528112 7.787529033 7.864547273 8.066387713 149120191 sox Sulphur Sulphur oxidation Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 9.96484878 9.617279529 9.767693554 9.510913176 9.536414928 9.684262287 9.624562407 9.949659188 9.313726849 9.755310035 10.07556892 10.03638774 148568491 sigma_32 Stress Sigma factors Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 9.025225861 9.019539106 9.107966441 8.036035316 7.872852675 7.925258947 8.175137104 7.610121982 8.111062648 7.777381599 7.90828022 8.069291533 254671991 ppk Phosphorus Phosphorus utilization Neisseria meningitidis serogroup W135 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria meningitidis; 8.188737594 8.186636832 8.267588425 7.374451444 7.237865489 7.469239392 6.972778595 6.917595952 7.763587953 7.399041431 7.341158514 7.481780544 225171557 hrcA Stress Heat shock Desulfonatronospira thiodismutans ASO3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfonatronospira;species:Desulfonatronospira thiodismutans; 8.45489377 8.486433098 8.491857414 7.850575597 7.543622453 7.702996301 7.371301158 7.376616589 7.909901225 7.78956841 7.395226922 7.944476846 91698997 pimF Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 8.430300591 8.728893401 8.651958743 8.238732368 8.472094159 8.98088559 9.108239205 8.735092715 8.590677946 8.65829849 8.899049066 8.799677753 76884183 pchCF Organic Remediation Aromatics BTEX and related aromatics Nitrosococcus oceani ATCC 19707 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 9.70941545 9.586725052 9.678001501 8.989246743 8.951875161 8.905285633 9.007251181 8.689024678 8.940857123 8.8786662 8.875626188 9.040363712 184199868 AceA Carbon cycling Carbon degradation others Kocuria rhizophila DC2201 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 8.296298289 8.009895871 7.974343485 8.511581744 8.112366762 8.029858829 8.396479908 8.165819122 8.481916099 7.84927828 7.615316815 8.095881148 186467250 phtA Organic Remediation Aromatics Aromatic carboxylic acid Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 8.750784765 8.661002638 8.76568571 8.182249524 7.943774124 8.281422627 7.903428983 7.506709864 7.920039833 7.731103721 8.333896052 260423396 glnA Stress Nitrogen limitation Citreicella sp. SE45 9.558770253 9.445715092 9.628102478 9.103143031 9.049515455 9.054694219 9.089937067 9.100359589 9.26034663 9.184090524 9.253793106 9.227953447 14024055 sigma_32 Stress Sigma factors Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 8.412943516 8.397504151 8.780357234 8.400764481 8.354441911 8.246238475 7.751006958 8.081996557 7.990550817 7.988412549 8.213318618 8.561363644 67522849 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 9.827134484 10.27395654 9.713762708 9.025740008 9.111492293 9.986605274 10.28055889 9.757234306 9.618927984 9.386471699 9.602971406 9.614147376 85813892 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces rimosus subsp. paromomycinus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces rimosus; 9.243430599 8.889774071 9.03166708 8.830693344 8.807138954 8.838229651 8.114509088 8.648000871 8.607272188 8.560904639 8.52545287 8.906063799 197762285 exochitinase Carbon cycling Carbon degradation Chitin Streptomyces sp. SPB74 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.270436071 7.995724345 8.45957955 8.42559222 8.385750564 7.820730328 8.200249378 8.313397358 7.987993945 8.323134585 7.377254659 222109536 silC Metal Resistance Silver Diaphorobacter sp. TPSY superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax ebreus; 8.70878492 8.718749081 8.598465792 8.226306986 8.673734814 8.537363367 8.880389593 7.68154809 8.106530026 8.099590314 8.167016929 205375459 phoA Stress Phosphate limitation Bacillus coahuilensis m4-4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coahuilensis; 8.239178878 8.129328833 8.398020267 7.096460922 7.283658401 7.196154571 7.324223367 7.360211826 81251653 nirS Nitrogen Denitrification uncultured organism 9.768660855 9.712055225 9.887848098 9.691908206 9.707091336 9.610937361 10.22066422 10.11105075 9.776154006 10.14447324 10.27282091 9.642305697 45386139 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 8.273761914 8.447284733 8.584766193 8.152375973 8.058219234 7.849700795 7.927178352 8.045024007 8.384040456 7.980885774 8.115209117 7.706149641 229208227 katE Stress Oxygen stress Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 9.384478465 9.273256403 9.408843839 9.521163399 9.662624704 9.35186378 9.204233548 9.835582326 9.182272862 9.516695467 9.561035604 9.651465727 209401598 narG Nitrogen Denitrification uncultured bacterium 8.431653244 8.500563665 8.38564847 8.34002692 8.269136353 8.723169744 8.715105188 8.540899181 229377924 pstB Stress Phosphate limitation Oxalobacter formigenes HOxBLS 8.754839529 8.698343764 8.778954972 8.911808552 9.100519913 8.877505667 8.626946076 9.306046912 8.831486828 8.82820939 8.845356022 9.316454682 260462835 fnr Stress Oxygen stress Mesorhizobium opportunistum WSM2075 8.129887311 8.272582238 8.200044421 8.26254068 7.997453347 8.728422049 8.446324304 8.326699129 8.229367556 8.64416906 8.196318931 167568274 sigma_70 Stress Sigma factors Burkholderia oklahomensis C6786 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia oklahomensis; 8.711935111 8.51507426 8.38401022 8.350499621 7.767779158 8.208259179 8.40379554 8.4306916 8.296854986 8.338719158 8.270414228 8.650509466 226318818 gdh Nitrogen Ammonification Deinococcus deserti VCD115 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 9.418661218 9.666287749 9.486465116 9.210663476 9.74307114 9.961767432 10.03985455 10.25689674 10.01475939 10.15762237 10.08131202 10.10584434 154087800 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Parabacteroides merdae ATCC 43184 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides merdae; 9.303438917 9.146443828 9.450724242 9.032914937 8.953450638 8.930310675 8.703213931 8.985648736 8.669803989 8.918933608 8.892742183 8.908906754 257789905 katE Stress Oxygen stress Eggerthella lenta DSM 2243 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Eggerthella;species:Eggerthella lenta; 8.605457917 9.067739448 8.901313113 9.290805098 9.241751714 9.258614826 9.329383518 9.462555206 9.078939881 9.502083715 9.523158326 8.878283134 156741993 clpC Stress Protein stress Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 9.034277356 9.133781317 9.123535698 8.866753113 8.712205472 8.655256192 8.555883872 8.745438615 8.663294745 8.637411765 8.607935763 8.7673942 124267200 SMR_antibiotics Antibiotic resistance transporter Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 8.576735324 8.591714467 8.269672123 8.193488365 7.987466192 8.353058839 8.681241149 8.124692689 8.527590303 7.976598937 8.197415735 8.118109099 162146360 cydA Stress Oxygen limitation Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 9.20417968 9.183698059 8.767068141 9.480948603 9.369543735 9.183940624 9.517415721 9.333405103 9.403319522 9.030823348 9.084059671 8.832336532 88920597 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 8.007313344 8.355422411 8.420479439 8.237634655 8.115114565 8.037958618 8.062544236 8.324277218 8.591161801 8.467292992 8.423146794 8.2145684 139004122 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.609670481 8.594914038 8.999993027 8.418141363 8.505062855 8.242386676 8.331008935 8.378191175 8.781369356 8.702634913 8.696401032 8.803230489 254461523 phoB Stress Phosphate limitation Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 9.330225732 9.350495844 9.237811442 9.005306762 9.03363434 8.961722224 9.058024056 9.512515685 9.080728364 9.295776473 9.064263529 9.404318136 150954967 SMR_antibiotics Antibiotic resistance transporter Klebsiella pneumoniae subsp. pneumoniae MGH 78578 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 9.280812644 9.321138633 9.392387265 8.345629994 8.035196457 124493065 srt virulence surface protein Lactococcus lactis subsp. cremoris MG1363 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Lactococcus;species:Lactococcus lactis; 8.483047303 8.262940423 8.480788485 8.067300399 7.843670518 7.835515731 7.687785246 7.360314652 7.982428788 7.496033484 7.627379051 7.794242981 188581239 fnr Stress Oxygen stress Methylobacterium populi BJ001 9.795750682 9.820654796 9.69817143 9.169606798 9.144964245 9.160478779 9.053231777 8.88238562 9.22278997 8.851323575 8.940690553 9.193254876 256679463 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces sp. SPB78 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.774906958 8.811629809 8.961549254 8.654420423 8.744576926 8.723469455 8.564022578 8.953625128 8.393823178 8.776323845 8.702681762 8.433421699 184200778 obgE Stress Radiation stress Kocuria rhizophila DC2201 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 10.18881908 9.999268971 9.782836486 10.02081897 10.02400945 9.760283394 9.735990764 9.839636423 10.04556486 10.01441262 10.21866556 9.598645808 118173204 pcc Carbon cycling Carbon fixation Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 10.25870087 10.10701082 9.933098752 9.534507535 9.285351305 9.266551814 9.790069567 9.217338867 10.09046553 9.40719128 9.258853417 9.4123872 258648419 sigma_38 Stress Sigma factors Prevotella tannerae ATCC 51259 8.391267038 8.535309659 8.432214446 8.314656277 8.241558007 8.154601497 8.350468721 8.138388007 8.460528615 229166066 AceB Carbon cycling Carbon degradation others Bacillus cereus AH621 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 8.413758117 8.086947849 8.378851089 7.983849174 8.087913326 7.863905725 8.194482232 8.087509352 8.139930605 8.028029272 7.886896283 8.008135946 213585306 CopA Metal Resistance Copper Salmonella enterica subsp. enterica serovar Typhi str. E98-0664 8.065646009 8.371167199 7.87823789 7.863518244 7.770996688 7.491796719 7.933538832 7.993090511 8.002375569 7.957388778 7.946344881 163858141 narH Stress Oxygen limitation Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 10.22107396 10.31231444 10.06546464 9.6937801 9.858954957 9.745409359 9.648502951 9.664173299 9.650805227 9.501199593 9.875422295 9.851408599 118440372 sigma_24 Stress Sigma factors Methylophilales bacterium HTCC2181 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales; 8.421286081 8.010434399 7.13922255 7.012454851 7.056315914 6.672266919 7.317617043 6.987537984 7.338225233 120552949 gyrB other category gyrB Marinobacter aquaeolei VT8 9.178433231 8.65570757 8.791743322 8.399902055 8.340298575 8.322731631 7.986542622 8.218195832 8.242551483 8.216263316 8.240438344 8.403832852 169848586 phenol_oxidase Carbon cycling Carbon degradation Lignin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 8.902906043 8.409875187 8.94285596 8.085621608 7.98953305 7.822675446 7.72040764 7.882514642 8.068362237 7.796629592 7.756045644 8.134964015 146338913 proO Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. ORS278 8.496380958 8.194756635 8.221078417 7.784311301 7.688894673 7.59983288 7.366330927 7.772760689 7.721276124 7.452508381 7.391341217 13813689 PGK Bioleaching Carbon fixation Sulfolobus solfataricus P2;Sulfolobus solfataricus 8.078216502 8.431270998 169191017 ChrA Metal Resistance Chromium Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 8.955501928 8.598611138 8.628640761 8.486501488 8.363864131 8.286519048 172071645 CopA Metal Resistance Copper Micrococcus luteus NCTC 2665 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus;species:Micrococcus luteus; 8.597321776 8.579435206 8.715282125 8.647667436 8.28571923 8.688585704 8.75465089 8.695295694 8.610599068 8.780260319 8.275035605 196223617 pstA Stress Phosphate limitation Chthoniobacter flavus Ellin428 8.886172219 8.753802186 8.66422555 8.60978895 8.845883511 8.506070267 8.936622284 8.732112697 8.461655771 8.530516745 8.733825981 8.523937193 68263044 pstB Stress Phosphate limitation Corynebacterium jeikeium K411 8.288438933 8.00466429 8.216119151 7.73915234 7.685188716 7.567312551 7.594002966 7.966952868 8.06916445 7.999764438 7.424891565 7.914251313 57903688 gyrB other category gyrB Xylella fastidiosa superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xylella; 9.09398456 8.997991169 9.130765975 8.346859575 8.263718803 8.322300117 8.318725618 8.030218604 8.20092519 8.179160732 8.06825688 8.430099422 29608516 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 9.119917713 8.782349047 8.94408941 9.00869219 8.711316532 8.335244961 9.012365258 9.160101599 8.661812045 8.980542404 8.814415352 8.691756844 56313182 phoB Stress Phosphate limitation Aromatoleum aromaticum EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 9.436622109 9.300922884 9.040138149 9.114810694 8.546219271 8.437305748 8.937660713 9.014798683 8.889878056 8.838426641 8.62704627 8.664858764 166200726 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.638035239 8.368662777 8.481438475 8.107687731 7.772178849 8.121614498 8.127460511 7.920085243 8.015046262 8.01267748 8.306883803 8.147593078 54022310 fnr Stress Oxygen stress Nocardia farcinica IFM 10152 9.460870007 9.468927116 8.974091794 9.246998091 9.576090277 9.589706372 9.426247844 9.749484034 9.571160399 9.584331916 9.7107853 9.59948467 261878646 grpE Stress Heat shock Prevotella bergensis DSM 17361 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bergensis; 8.702749825 8.770041951 8.773428344 8.939115797 8.855912177 8.800320874 8.779252679 9.132400321 8.962168222 8.911587858 8.966730823 8.578409301 260414292 pstS Stress Phosphate limitation Synechococcus sp. WH 8109 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.280767394 8.189978919 8.616165869 7.768913091 8.053750202 8.157057283 8.167852324 8.089948936 8.265345669 8.14243935 8.383591377 8.056052134 110833030 oxyR Stress Oxygen stress Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 8.122849671 8.013167199 8.449002077 7.841759588 7.496661874 7.749510543 7.54693716 7.293387897 7.970635317 7.899065546 7.734536215 7.974354802 213583335 CopA Metal Resistance Copper Salmonella enterica subsp. enterica serovar Typhi str. E98-0664 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 10.01942684 10.42122534 10.42684107 10.25978412 10.37023653 10.21832086 10.33232888 10.48759647 10.26820967 10.59079116 10.45142969 10.47525288 52080511 pcc Carbon cycling Carbon fixation Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 8.408191413 8.421768044 8.491459637 8.186423054 7.987824303 8.121411404 8.235918202 7.942170385 8.476455199 7.947999491 7.86835664 7.873086523 167033300 cytochrome Energy process Energy process Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.035595827 8.117931807 8.194551937 7.995041473 7.89459051 8.157907753 7.730269536 8.142732642 8.185512257 8.17720289 8.106077216 118435774 nifH Nitrogen Nitrogen fixation Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 8.803573258 8.762420419 8.915892445 8.060081619 8.372091632 8.496915482 9.066370787 7.883246438 8.747217993 8.187429455 8.103559171 8.188266584 168702514 gyrB other category gyrB Gemmata obscuriglobus UQM 2246 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata;species:Gemmata obscuriglobus; 9.841297387 9.62053736 9.982222914 8.895203444 8.868841052 8.595722168 223692980 pcc Carbon cycling Carbon fixation Desulfobacterium autotrophicum HRM2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium;species:Desulfobacterium autotrophicum; 8.398690061 8.325117953 8.463172987 7.731114024 8.072943846 7.697401729 7.399653534 7.203125052 7.674498499 54025551 linB Organic Remediation Pesticides related compound Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 8.230508616 7.926492943 8.204604628 7.946536096 7.846909595 8.029270949 7.431187456 7.938821067 8.012949064 7.849380527 7.810847751 7.699598411 260464221 fnr Stress Oxygen stress Mesorhizobium opportunistum WSM2075 8.870158174 9.024616378 9.176075442 8.622547555 8.671829086 8.465040085 8.606320267 8.994017427 8.810682623 8.677122483 8.689196635 8.677690121 39650781 fnr Stress Oxygen stress Rhodopseudomonas palustris CGA009 8.46081714 8.212076053 8.411534191 8.532497439 8.428889921 8.008148842 8.168662661 8.394958705 8.380482995 8.228995705 8.288735564 8.129567814 95133664 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Desulfuromonas acetoxidans DSM 684 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Desulfuromonadaceae;genus:Desulfuromonas;species:Desulfuromonas acetoxidans; 8.657361367 8.332687153 8.772528341 8.802033166 9.042520257 8.548321127 9.114590965 8.650102593 8.951945608 9.220762909 8.634496976 17744079 nmoA Organic Remediation Aromatics Nitoaromatics Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 9.133293227 9.102704136 9.360280298 8.701886344 8.607305557 8.644884961 8.314091533 8.475933872 8.489437852 8.497464479 8.382056543 8.892708541 110680921 Catechol Organic Remediation Aromatics Other aromatics Roseobacter denitrificans OCh 114 8.122832083 8.253244291 8.130705881 7.910154268 7.805130227 7.95843114 7.942172534 8.126642304 8.140543277 7.899204048 7.864341977 27351342 ArsC Metal Resistance Arsenic Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.050384233 7.979846137 7.683520726 8.18852622 8.253621079 8.139144608 7.9494047 7.800020113 7.994593556 145214734 ArsC Metal Resistance Arsenic Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.894484821 8.982871679 9.006548203 8.789812559 8.74400883 8.581037969 8.810403184 8.73686766 8.765097584 8.739581069 8.781045161 8.320188901 239988087 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Streptomyces roseosporus NRRL 11379 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces filamentosus; 9.446961062 9.440621525 9.419678599 8.918413826 8.834156702 9.234438482 9.57772097 9.159952274 9.535058941 9.030934557 8.859680993 8.998492769 149817795 cap virulence capsule Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 10.00841534 9.939025366 9.917702215 9.487518818 9.378229005 9.121935649 9.082301957 9.261923654 9.168301967 9.200772308 9.380188789 9.535720689 124021870 gyrB other category gyrB Prochlorococcus marinus str. MIT 9303 8.049797113 8.016759843 7.837323942 8.398625518 8.255842762 7.316586449 7.99147678 8.271678008 8.292722808 89473884 nifH Nitrogen Nitrogen fixation uncultured cyanobacterium superkingdom:Bacteria;phylum:Cyanobacteria; 7.595513733 7.329517214 7.328571894 7.215537248 7.148601566 7.6879829 7.384095748 7.098778173 7.382937218 240168291 glnA Stress Nitrogen limitation Mycobacterium kansasii ATCC 12478 8.220892128 8.25667385 7.957550899 8.090152787 8.157343289 7.875855286 7.82900646 7.932525922 8.658629925 7.93154627 7.794520755 8.064467188 159185947 amyA Carbon cycling Carbon degradation Starch Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.61011666 8.491797736 8.709978983 8.167217682 7.975698801 7.899546091 7.708738294 8.13057084 8.026694856 7.953830401 7.852438831 8.351952973 219861521 Catechol Organic Remediation Aromatics Other aromatics Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 8.387939145 8.364354065 8.520021628 7.596741039 7.572398417 7.598968716 8.236120372 7.763548678 8.386211224 7.598644324 7.753054292 7.816413726 32307957 narG Nitrogen Denitrification uncultured bacterium 7.8222985 7.696698598 7.478769249 7.588765199 7.381350762 7.810384306 7.434373512 7.613645653 7.495529727 167462574 narJ Stress Oxygen limitation Paenibacillus larvae subsp. larvae BRL-230010 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus larvae; 8.311390579 8.326747817 8.461942833 8.914707968 8.397907701 194597843 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 8.188189148 8.019110935 8.52159979 7.616168064 7.671269677 7.517290957 7.27094784 7.28743387 7.739494095 7.371639157 7.572856587 7.802812242 31619067 linB Organic Remediation Pesticides related compound Mycobacterium bovis AF2122/97 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium bovis; 8.169484086 7.976356541 8.097382901 7.67410172 8.126292204 8.044873118 8.039471115 8.026339875 8.096658449 219722844 linC Organic Remediation Pesticides related compound Stenotrophomonas sp. SKA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 9.191157949 8.824934661 8.497414994 8.96925865 8.778772794 8.784477077 8.343355966 9.043189677 8.658228992 8.960180677 8.968706331 8.765072862 110602716 CopA Metal Resistance Copper Methanoculleus marisnigri JR1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanoculleus;species:Methanoculleus marisnigri; 8.428231515 8.443524311 8.55682247 8.344006961 8.144414989 7.983684619 7.905482226 8.466662496 8.294266633 8.398424997 8.015355107 8.285898706 148241021 fnr Stress Oxygen stress Bradyrhizobium sp. BTAi1 8.821449633 8.756082125 8.975021211 8.186343825 8.099200242 8.052646713 7.898917725 7.802588352 8.085874276 8.004775964 8.187126935 189420335 obgE Stress Radiation stress Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 8.207540945 8.143385833 7.139803337 7.317370443 7.542302082 7.077291046 6.988400718 7.737294191 7.529153626 7.289558751 7.414441481 83637454 pilin virulence pilin Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 8.738799276 8.499000149 8.820062332 8.105990304 7.916164795 8.010938042 7.856483225 8.321882955 7.630414696 7.636931068 8.044391098 116196058 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 8.599803739 8.292843698 8.618419879 7.07198783 7.235710701 7.912357915 7.839109461 7.26377116 8.128647345 7.723223089 7.755888427 7.88157962 229760704 amyA Carbon cycling Carbon degradation Starch Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 9.048724187 8.753940843 8.833794455 8.599681018 8.453978234 8.182406019 8.482959131 8.571800821 8.38670931 8.37820935 8.569436557 8.381166447 71024643 ahpC Stress Oxygen stress Ustilago maydis 521 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Ustilaginomycetes;order:Ustilaginales;family:Ustilaginaceae;genus:Ustilago;species:Ustilago maydis; 8.686724659 8.267365342 8.166986253 9.060886006 8.632793876 8.355706898 8.445395465 8.539349105 8.5178162 8.549489658 8.678084339 8.077974139 227406968 rubisco Carbon cycling Carbon fixation Geodermatophilus obscurus DSM 43160 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Geodermatophilus;species:Geodermatophilus obscurus; 8.802997972 8.895270443 8.586345567 8.895656697 8.630182001 8.411819446 9.021428631 8.657816175 8.683076469 8.592610709 8.573653817 8.285731179 54633216 pcpA Organic Remediation Aromatics Chlorinated aromatics Sphingobium japonicum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 8.789631485 8.690602303 8.500979009 8.567964319 8.402365362 8.798745724 8.843098105 8.455711499 8.870090748 8.487030167 8.501491437 8.219013406 169860759 ChrA Metal Resistance Chromium Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 8.123973415 8.133799977 8.570688635 8.461809639 8.488332064 8.767135897 8.303641 8.932160009 8.545061491 8.706387033 8.523135049 8.798286363 86156891 pcc Carbon cycling Carbon fixation Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 7.713755259 7.694619735 7.93161716 7.210517757 7.788730122 7.961517545 8.003332103 7.50325046 7.750454874 6460775 AceB Carbon cycling Carbon degradation others Deinococcus radiodurans R1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 8.549184109 8.743768637 8.573780434 8.616441854 8.713241523 8.82436664 8.92080158 8.916006172 8.837891122 9.137116151 9.047725404 9.004563473 160893000 sigma_70 Stress Sigma factors Clostridium sp. L2-50 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 7.829477384 7.592442406 7.867426111 6.85006451 7.611212955 7.682232205 7.26109289 7.376776454 139003387 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 9.071456191 8.802279538 9.21771882 9.379017982 8.638815544 8.459894392 8.764279002 8.898888925 8.633007333 9.088029289 9.001111181 8.494196128 127511805 obgE Stress Radiation stress Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 7.83997325 7.230424698 7.111945014 7.522471051 7.879580895 7.44633779 7.437731616 7.524506383 57015494 gyrB other category gyrB Campylobacter upsaliensis RM3195 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter upsaliensis; 9.951161099 9.769518879 9.773201436 8.872848077 8.874683087 8.942618245 9.224249217 8.886574411 9.605620057 9.363136902 9.410406265 9.518593879 108762837 cydB Stress Oxygen limitation Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 9.282235461 9.10901974 9.205736764 8.68225354 8.671342936 8.435396633 8.472255976 8.659420108 8.612845058 8.674067338 8.809492635 84667634 hrcA Stress Heat shock Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 10.68848892 10.64035218 10.69501254 10.01634303 10.08104799 9.990432517 10.28468323 9.839423548 10.50396419 10.11099995 10.49884973 10.57588808 225179839 clpC Stress Protein stress Clostridium sp. M62/1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 8.745042603 8.949577257 8.58544447 8.289021451 8.438560388 8.581195079 8.407349735 8.834634286 8.282461792 8.770492219 8.797493737 8.676549117 261879139 cda Carbon cycling Carbon degradation Starch Prevotella bergensis DSM 17361 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bergensis; 8.77333147 8.561149279 8.657688123 8.347718249 8.210776485 8.127794808 7.941477377 8.247839251 8.240026321 8.248849245 8.165450753 8.587296379 259166311 fnr Stress Oxygen stress Corynebacterium efficiens YS-314 8.307062265 8.271993991 7.685392651 7.603580509 7.734154517 7.658149607 7.394676907 8.153873715 7.618211555 7.534054112 7.645203131 163792356 MFS_antibiotic Antibiotic resistance transporter alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 8.619155645 8.777308928 8.480702947 8.303326353 8.287390276 8.258389919 8.780721971 8.451288349 8.664160677 8.339957487 8.201988766 7.968641833 262220849 type_III_secretion virulence secretion Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;species:Grimontia hollisae; 8.522777785 8.550645127 8.31032791 7.771074392 7.768914123 7.743944923 7.884182848 7.538878682 8.216420333 7.444772164 7.645690769 7.781349434 167594299 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 8.26908787 8.192796239 7.593113322 7.710959809 7.832410957 7.956239647 7.69510617 7.604665532 7.45330181 139478525 mer Metal Resistance Mercury uncultured soil bacterium superkingdom:Bacteria; 8.751721945 8.668487989 8.363125506 8.755309529 8.222383833 8.064281099 8.437741675 8.485599848 8.41989505 8.251053189 7.92888787 7.934854225 113526722 catB Organic Remediation Aromatics BTEX and related aromatics Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.474044668 8.652983121 8.631234948 7.808739318 8.082818288 8.085908139 8.48524237 7.590111874 8.658753165 7.83562555 8.013714423 7.84658773 62114794 contractile_central_tail_tube_protein Bacteria phage STRUCTURAL Aeromonas phage 31 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.224560884 7.309545135 7.284233814 6.671779834 7.462949367 7.150183593 7.208608551 187728358 fnr Stress Oxygen stress Ralstonia pickettii 12J 9.168685583 9.130998352 8.96068135 8.739616448 8.719237957 8.778713417 9.08163661 8.619696491 9.451773339 8.554740757 8.482497922 8.69047169 116812191 nifH Nitrogen Nitrogen fixation Clostridium sp. Kas104-4 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 8.097015264 8.135402757 8.319236212 7.319163287 7.319889824 7.324232522 6.796515746 6.759102386 7.635609495 7.16289561 7.086898015 7.417461439 209401818 narG Nitrogen Denitrification uncultured bacterium 8.714479251 8.433789233 8.825616604 8.46055887 8.487236906 8.414158302 8.311186221 8.361177304 8.573440496 8.391777684 8.410852733 8.36321148 148531753 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Lactobacillus reuteri F275 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus reuteri; 8.412058057 8.493535753 8.681221564 7.926663829 7.820234119 7.662541588 7.266541822 6.929326749 7.300477581 7.400624572 7.639958771 187940072 TerD Metal Resistance Tellurium Pseudomonas aeruginosa superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 9.266169714 9.57971673 8.374663839 8.751003443 8.829448773 9.213180917 9.169094339 197622681 tutFDG Organic Remediation Aromatics BTEX and related aromatics Aciduliprofundum boonei T469 superkingdom:Archaea;phylum:Euryarchaeota;genus:Aciduliprofundum;species:Aciduliprofundum boonei; 8.467278482 8.72050199 7.902550848 7.574034215 7.448653369 7.32361227 7.729863934 7.522821189 7.926901731 145701890 drug_resistance_transporter Bioleaching Antibiotic Resistance Metallosphaera sedula DSM 5348 8.726098315 8.874387875 8.919705635 8.315317449 8.304725716 8.157217208 8.02669247 7.733146701 8.128994236 8.023483575 7.927476193 8.276561243 118705303 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.278133538 8.428561113 8.689713157 8.32567663 8.417324465 8.407230343 8.332600322 8.12164653 8.579301848 8.1367211 8.109765727 8.140694842 259377418 dsrB Sulphur sulfite reductase Desulfoglaeba alkanexedens superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Desulfoglaeba; 8.706468043 8.891271857 8.738428507 8.480119004 8.601668723 8.375912115 9.069545579 8.899906298 8.906750904 8.71167217 8.629382258 8.677120132 145247126 AceA Carbon cycling Carbon degradation others Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8.829743888 8.690448905 8.813207749 8.401509973 8.144932309 8.238026759 8.320165103 7.778399821 8.302404459 8.034761087 8.126106519 8.264893827 22295747 Al Metal Resistance Aluminum Thermosynechococcus elongatus BP-1 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Thermosynechococcus;species:Thermosynechococcus elongatus; 8.833502903 9.102286437 8.892640352 7.837244986 8.279539932 8.758254685 9.000809888 8.047946074 8.639665762 8.089016427 8.635616639 8.70717652 92394043 pimF Organic Remediation Aromatics Aromatic carboxylic acid Psychrobacter cryohalolentis K5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter cryohalolentis; 7.983566602 7.943089287 8.28181267 7.525088829 7.349977546 7.287188903 6.724360663 6.592435731 7.62994995 7.145807776 7.022436617 7.183008414 69283912 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 8.341136416 8.513393661 8.360070191 8.39083268 8.06686115 7.956578921 7.953358546 8.588454118 8.278998028 8.425767099 8.269607876 8.499084578 89358823 catB Organic Remediation Aromatics BTEX and related aromatics Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.317547714 8.608844659 8.740390386 8.593219343 8.781391998 8.72325381 8.870782292 8.851942437 8.62085837 9.18426541 8.92132103 8.72873553 239831673 nirK Nitrogen Denitrification Ochrobactrum intermedium LMG 3301 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 9.085916062 8.921045717 8.803819118 8.270876549 8.405823652 8.458802199 8.892530978 8.800058495 9.133677433 8.320343906 8.441815481 8.405380584 90206686 TerC Metal Resistance Tellurium Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.153721974 7.842683866 7.65553193 8.083847343 8.157656288 7.961555988 8.221692274 7.654304023 7.875522153 7.663876555 170774889 fnr Stress Oxygen stress Leptothrix cholodnii SP-6 8.601416266 8.224801444 8.060304075 7.916014486 7.981620445 8.36277212 8.262680243 8.105582337 8.502506889 8.45758019 8.413323026 121530927 cbdA Organic Remediation Aromatics Chlorinated aromatics Ralstonia pickettii 12J 9.581772161 10.07994295 9.694535917 8.873452796 8.417795798 9.593586781 261281092 ara Carbon cycling Carbon degradation Hemicellulose Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.989355197 8.839225925 8.80550237 8.694366242 8.960447323 9.202637157 8.917432657 9.292652747 9.11011615 8.928207219 9.175951613 8.793222089 86158121 cytochrome Energy process Energy process Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 8.189472006 8.230649573 8.468132531 8.194908708 8.411794282 8.529912377 8.119338846 8.519417243 8.497246381 8.251301892 8.500358276 8.159500488 111221747 TerZ Metal Resistance Tellurium Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 9.110879911 8.974943229 8.362721233 8.545477382 8.311044976 8.729757163 9.079188064 8.694953446 8.664773839 8.640555127 8.755826434 8.521373041 24984867 fnr Stress Oxygen stress Pseudomonas putida KT2440 8.738577828 8.693093105 9.070266755 8.479558825 8.070415515 7.896466053 7.98292208 7.797772708 7.969054504 8.230959583 8.42734313 154159775 fnr Stress Oxygen stress Xanthobacter autotrophicus Py2 8.625637308 8.836686393 8.855208032 8.464469761 8.610928276 8.519538378 8.623356496 8.73604087 8.550564055 8.70272399 8.691328447 8.251653976 158520948 bco Organic Remediation Aromatics Aromatic carboxylic acid Candidatus Desulfococcus oleovorans Hxd3 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus;species:Desulfococcus oleovorans; 8.857373221 8.963679653 8.960554287 8.615546443 8.609513462 8.28127535 8.106823034 8.401617489 8.354917554 8.142469465 8.590140958 78212364 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Synechococcus sp. CC9605 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.322970059 8.257751647 8.396792768 7.879677709 7.9704356 7.568667317 7.661108814 7.655244088 7.590421827 7.544644494 7.690039974 145217578 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 9.716503539 9.620591156 9.549404114 9.362991289 9.160581081 8.901550756 9.301176991 9.147715261 9.061602705 9.21705256 9.354213522 9.391346987 119881392 chnB Organic Remediation Other Hydrocarbons Salinispora arenicola CNS205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 8.738647404 8.679988567 8.3512201 8.34979143 7.904632307 7.886197885 8.266718116 8.39028817 8.402047708 8.383243001 126707826 tftH Organic Remediation Aromatics Chlorinated aromatics Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 8.492520076 8.707088042 8.364000832 8.165624431 8.195602885 8.491989089 8.583518948 8.358818829 8.563316218 8.613600544 8.576189088 8.402132823 77966253 SMR_antibiotics Antibiotic resistance transporter Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.606072175 8.298304808 8.145981479 7.862990795 8.179521106 8.491379137 8.034053053 8.60574355 7.58619293 8.120139896 8.003942106 151302277 APS_AprB Sulphur adenylylsulfate reductase Desulfobacterium catecholicum superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae; 8.508607844 8.570404489 8.804698237 8.061425248 7.994639272 7.898049508 7.766926793 7.685114366 8.106738646 7.972388137 7.982341764 7.87225152 88864126 ZntA Metal Resistance Zinc Jannaschia sp. CCS1 9.042794976 9.010573846 8.993909441 8.621050143 8.518383204 8.578114051 8.840479889 8.684038842 8.541361331 8.637159229 8.545659821 8.424011493 35211760 cydB Stress Oxygen limitation Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 8.115183926 7.898476947 8.369829793 7.245454879 7.589967019 8.075166254 8.312040297 7.790620618 8.079677201 7.737329351 7.73614601 154246628 pcaG Organic Remediation Aromatics Other aromatics Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.349696014 8.294812008 8.52419279 8.444962591 8.46450139 8.163641576 8.613134278 8.419987086 8.69233793 8.719494553 8.390592243 110165288 phenol_oxidase Carbon cycling Carbon degradation Lignin Trichodesmium erythraeum IMS101 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Trichodesmium;species:Trichodesmium erythraeum; 9.072417349 8.669498052 9.134034442 8.265932538 8.106647208 8.042437679 7.791960409 7.726753916 7.894521715 7.861756362 7.880884868 8.194905851 69934848 mauAB Organic Remediation Herbicides related compound Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 9.316446385 9.165470579 9.199389183 8.905479209 8.850959676 8.585452398 8.731407854 8.857860531 8.80710055 8.779289318 9.015437238 8.868441933 56911395 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 8.563669046 8.595782601 8.497972934 8.392212426 8.507932439 8.160672873 7.88448894 8.220167494 8.20166661 8.361226142 8.321936932 8.379331913 56478348 CopA Metal Resistance Copper Azoarcus sp. EbN1 9.229334083 8.794035345 8.604788729 9.239575694 9.057482179 8.908882305 9.273820185 9.006942031 9.040963635 8.995715989 9.064161799 8.809334603 126627815 phn Organic Remediation Herbicides related compound Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 9.417894831 9.405822707 9.48399603 8.560652967 8.613183225 8.739670421 8.995802978 8.367303301 8.914060827 8.574376096 8.67513771 8.875907376 33330434 mhpA Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.45254657 8.54851267 8.093840877 8.068097568 8.248547858 8.512340506 8.755526729 8.143337868 8.695853014 8.316471893 8.183635046 8.048366294 14090318 dsrB Sulphur sulfite reductase Desulfovibrio longus superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 8.204307344 8.434361925 8.354300397 7.726946488 7.969931467 8.243735315 8.135368588 8.086516948 8.13796558 8.473503118 8.349826446 8.401003548 223936161 sigma_24 Stress Sigma factors bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 8.319319948 7.947589879 8.372369337 7.947699497 7.944466262 7.724306947 7.710071093 7.748243932 8.021313429 7.996817748 8.327660792 8.195551361 116622615 ZntA Metal Resistance Zinc Solibacter usitatus Ellin6076 8.511859659 8.507489168 8.74797699 8.515245111 8.255320894 8.222664713 8.263251163 8.593842283 8.337095836 8.51758218 8.319603749 8.376739395 157407680 ureC Nitrogen Ammonification Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 8.732357522 8.334221735 8.493049698 8.562381738 8.495049173 8.232557137 8.171387132 8.492088832 8.177917551 8.592215081 8.534113028 8.571067815 197709980 pulA Carbon cycling Carbon degradation Starch Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 9.514948164 9.351505498 9.25983099 9.287176276 8.629076529 9.057365958 9.305317246 9.053475446 8.913227642 9.160019372 8.970781159 9.017060467 170768174 dmsA Organic Remediation Others Escherichia albertii TW07627 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 9.707688376 9.558675964 9.818451019 9.468216885 9.341167126 9.308124826 9.808000078 9.519389956 9.333762353 9.36689919 9.418003391 9.333676109 111026206 akbF Organic Remediation Aromatics BTEX and related aromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.436525099 8.231773767 7.676358923 7.671247239 8.04162431 7.551985577 7.533928314 8.186019458 7.38490931 7.399237051 7.622658591 83847416 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 8.516460912 8.40986392 8.800762435 8.835416583 8.91617379 8.37098378 8.931323178 8.32385672 8.537921849 8.799202199 8.327201907 199594037 narG Nitrogen Denitrification uncultured bacterium 8.732421192 8.441463868 8.518180035 8.03303196 7.84990452 7.8852028 7.892962469 7.930334552 8.095371189 8.133195103 7.999028877 8.141919697 146303093 ferredoxin_oxidoreductase Bioleaching Electron transport Metallosphaera sedula DSM 5348 8.364025084 8.650818994 7.809553536 7.435008145 7.105881732 7.266066206 254394015 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 8.208078825 8.193347181 8.089422035 7.613058275 7.687302945 7.57145865 7.436430597 7.556941257 7.768153215 7.604618034 7.678093582 7.465248939 119385205 fnr Stress Oxygen stress Paracoccus denitrificans PD1222 8.509698281 8.569378933 8.640276522 8.483399605 8.471640025 8.429285902 8.627266468 8.708843007 8.344870801 8.714878377 8.524739757 8.369000698 210074669 ara_fungi Carbon cycling Carbon degradation Hemicellulose Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 8.702179083 8.728521516 7.950829855 8.378154925 8.430472302 8.29226396 8.116299978 8.256980814 8.103345202 8.416452751 8.07210783 214042235 pheA Organic Remediation Aromatics Other aromatics Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.525968249 8.655163285 8.490417989 8.420228518 8.608007247 8.480299607 8.291316985 8.565430069 8.419784524 8.800349766 54309435 atzB Organic Remediation Herbicides related compound Photobacterium profundum SS9 9.667988954 9.588106021 9.729274217 8.471694114 8.373450835 8.049386704 8.376863757 8.232909774 8.099513758 8.084914436 8.692526417 26278818 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.893108676 9.094525541 8.916440438 9.435124279 9.286728819 9.000462626 9.618656993 9.494107611 9.150632624 9.503017734 9.459469884 8.858295199 255110080 APS_AprB Sulphur adenylylsulfate reductase Sideroxydans lithotrophicus ES-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Sideroxydans;species:Sideroxydans lithotrophicus; 9.012354876 9.024221718 8.725256754 8.589439989 8.575630273 8.61202912 8.556154903 8.849365578 8.677621093 9.065049915 8.847131908 8.910294322 150019136 gyrB other category gyrB Clostridium beijerinckii NCIMB 8052 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium beijerinckii; 8.16823168 8.07214108 6.980716663 7.077310925 6.811631667 7.433344753 14209504 glnA Stress Nitrogen limitation Bradyrhizobium elkanii 7.083292647 7.481835538 7.1082764 7.462041531 7.04555823 6.880303552 109896488 mauAB Organic Remediation Herbicides related compound Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 9.120513876 9.049388979 9.265694214 8.463004605 8.304061998 8.331585321 8.037739683 8.167193965 8.273474129 7.952980346 8.166519397 8.616800047 271500425 type_III_secretion virulence secretion Dickeya dadantii Ech586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 7.593078865 7.37903296 6.981339446 7.809360958 7.425849222 7.459900996 7.482631796 196181027 Al Metal Resistance Aluminum Microcoleus chthonoplastes PCC 7420 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus chthonoplastes; 8.527680813 8.777345389 8.823341513 8.154730136 7.790201951 8.339907732 7.695984962 7.548166459 8.234383724 217976478 sigma_24 Stress Sigma factors Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 8.860464401 9.03461367 8.808009591 8.630677225 8.366139605 8.723846058 8.89304087 8.438576027 8.774590045 8.437559108 8.54766493 8.546633564 218215156 atzA Organic Remediation Herbicides related compound Clostridium hylemonae DSM 15053 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 8.447285335 8.389091588 8.865014406 7.80136728 7.773449379 7.95331347 8.102134756 7.93145404 7.954124306 8.000595646 7.861761056 8.029660992 144898973 pulA Carbon cycling Carbon degradation Starch Magnetospirillum gryphiswaldense MSR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 9.297902509 9.024429234 8.749802563 9.178785454 9.127200157 9.118405578 8.96787505 9.473902372 9.203353872 9.45945507 9.523798561 9.668233407 118002931 CopA Metal Resistance Copper Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.509348197 8.580590046 8.502018116 8.152263857 8.333756899 8.385667233 8.332348303 8.532631623 8.364215031 8.783645313 8.447479079 8.175106304 220725387 katE Stress Oxygen stress Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 8.573076029 8.614622917 8.349639047 8.567736156 8.575425596 8.498228296 8.858798508 8.702147677 8.770245294 8.652533428 8.663336661 8.45104248 89360576 akbF Organic Remediation Aromatics BTEX and related aromatics Xanthobacter autotrophicus Py2 8.747234295 8.728849643 7.996569027 8.072198505 8.134621341 8.214213673 8.303954538 8.410284719 7.948967395 8.208079053 8.328877846 118567081 APS_AprB Sulphur adenylylsulfate reductase Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:Candidatus Ruthia magnifica; 7.432608674 7.224655819 7.066612492 7.370850683 188581281 ppx Phosphorus Phosphorus utilization Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 8.967229683 8.789074518 8.77065994 8.818169079 8.654634794 8.46303907 8.84664078 9.152668567 8.751022982 8.803172547 8.545382938 8.794176549 27356535 cspA Stress Cold shock Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.238563537 8.37689069 8.815120269 8.531300073 8.5169665 8.010487409 8.413338968 8.896646815 8.423074484 8.543194415 8.30262094 8.41949411 164451687 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 8.452573344 8.444893244 8.011516628 7.892130996 8.366502553 8.224189105 8.40471113 8.575798819 8.353271395 222138063 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.794627478 8.648448563 8.628493165 8.000689574 8.226507729 8.633409063 8.592884499 8.517531727 8.719441902 8.201692256 8.137228165 8.045840227 111918898 amoA Nitrogen Nitrification superkingdom:Bacteria; 8.893601912 8.844339304 9.113839021 8.430869837 8.359296324 8.294638514 8.245747252 7.87992241 8.061424035 8.228623716 8.036824017 8.401064751 148568718 nifH Nitrogen Nitrogen fixation Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 8.649603759 8.557936943 8.731268457 8.311579323 8.188363853 8.155268436 7.853638612 8.216608296 8.324609349 8.172116027 8.13652833 8.269777176 2633685 glnR Stress Nitrogen limitation Bacillus subtilis subsp. subtilis str. 168 8.665733265 8.712332611 8.944939581 7.883571703 7.712904262 7.867112319 7.454890778 7.563675703 7.918012092 7.570442002 7.553958446 7.927840482 88794714 merB Metal Resistance Mercury Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 8.506463345 8.649715814 8.376375486 8.495368014 8.620556136 8.646770878 8.79738356 8.890086913 8.75868411 8.923912024 9.01896266 8.895267324 110681409 ZntA Metal Resistance Zinc Chondromyces crocatus superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Chondromyces; 9.010833079 8.804953465 9.117643016 8.535634265 8.567394485 8.434185596 8.229636524 8.253566468 8.481016266 8.270428999 8.367102255 8.641195535 89346304 narI Stress Oxygen limitation Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 8.611583356 8.655875199 8.884326114 8.141286193 8.11774126 8.395260792 8.891050698 8.20496363 8.89322912 8.286955739 8.278473266 8.292407512 262333572 mannanase Carbon cycling Carbon degradation Hemicellulose Rhodothermus marinus DSM 4252 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 9.380090633 9.198132438 9.122705339 8.807445806 8.935713301 8.623933574 8.928285339 8.138980562 8.675421631 8.676019211 8.703886057 145591423 mer Metal Resistance Mercury Pyrobaculum arsenaticum DSM 13514 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum arsenaticum; 9.201910995 9.152078239 9.101334949 8.678442981 8.705510624 8.824260843 8.816632445 8.631444527 8.853356487 83593841 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 8.517400713 8.729368942 8.616053777 8.171434163 8.147639447 8.089627724 8.112264177 8.536486781 8.591028454 8.585741283 8.316710525 8.316863649 146153917 AceA Carbon cycling Carbon degradation others Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 6.837105439 7.047239767 6.874317518 6.901295757 116624778 AceB Carbon cycling Carbon degradation others Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 8.538984814 8.733502803 8.780886527 8.971590405 9.098023601 8.802732433 8.859752332 9.15115031 8.800868652 9.058744085 8.786778523 8.778191755 209883800 pstB Stress Phosphate limitation Oligotropha carboxidovorans OM5 8.967446156 9.083798138 8.776316437 8.898913679 9.107838445 9.05443957 8.990760763 9.405037629 9.234112164 9.009908918 8.949004626 9.036030302 167541492 mcrA Carbon cycling Methane Methane production uncultured bacterium superkingdom:Bacteria; 8.331048869 8.619422945 9.140742961 8.93671643 8.883118543 8.433844964 8.504724793 9.017146527 8.758794505 8.855678146 8.396059807 8.810861389 170125159 hly virulence hemolysin Escherichia albertii TW07627 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 9.219732241 9.271506927 9.262301017 9.184305376 9.269349674 8.820545957 9.273340369 9.906116506 9.560103339 9.555199542 9.03654738 17743934 catB Organic Remediation Aromatics BTEX and related aromatics Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.741326535 8.631404545 8.153215918 8.698100663 8.732687114 8.914840807 8.462208259 8.840371605 8.607690624 8.679971553 8.851999791 8.512414898 115259972 nhh Organic Remediation Aromatics Nitoaromatics Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.792147596 8.498490845 9.131450858 8.951051933 8.615239359 8.7462089 8.926775055 8.396770669 8.650374545 8.430566745 30525501 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.258416408 8.517731709 8.297811826 8.151957692 7.981096378 7.928991907 7.622571118 7.948878259 8.258171119 8.04892786 7.919862185 8.282196803 25990065 gyrB other category gyrB Mesoplasma lactucae superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Entomoplasmatales;family:Entomoplasmataceae;genus:Mesoplasma; 8.633069192 8.391431258 8.634160054 8.082400524 7.787448931 7.891892308 7.38448414 7.148527278 7.7144927 7.807667852 7.753698064 71553794 SMR_antibiotics Antibiotic resistance transporter Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 8.641143957 8.607018164 8.692063782 8.176464117 8.04394737 7.933599901 8.450422746 7.922294362 8.137006875 7.689028229 270350206 iro virulence Burkholderia sp. CCGE1002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.572926684 8.47431988 8.536954854 8.598739291 8.632356877 8.48573647 8.514515671 8.74395284 8.537293019 8.769218817 8.439143648 8.566753181 260850322 mnp Carbon cycling Carbon degradation Lignin Lactarius fulvissimus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Russulales;family:Russulaceae;genus:Lactarius; 8.717708472 8.350134291 8.554989203 8.360603246 8.316638878 8.000635285 8.040801052 7.993718576 7.938931913 7.988605682 8.300311269 240865645 sigma_70 Stress Sigma factors Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.982417822 8.553568257 8.686026971 8.92153499 8.833629951 8.700877322 8.735391567 8.872127066 8.490033428 8.716211112 8.566343997 8.57315995 218169752 clpC Stress Protein stress Cyanothece sp. PCC 7424 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.87262925 8.660013227 8.929219244 8.396229384 8.345257529 8.344288246 8.463527882 8.310108714 8.503306548 8.672428678 9.010082192 8.937638997 261193797 endochitinase Carbon cycling Carbon degradation Chitin Ajellomyces dermatitidis SLH14081 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 8.129933882 8.065685233 7.642661775 7.826892553 7.413803797 7.459603256 7.663642845 7.709267583 7.555418233 7.343751935 7.655945646 40746932 tfdA Organic Remediation Aromatics Chlorinated aromatics Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 9.189534858 9.124868307 9.204023936 8.543649091 8.911178777 9.36469452 9.786850253 9.316555036 9.766324645 9.338548868 9.331528593 9.644735626 45386183 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 8.656956366 8.391147402 8.59543209 8.759597407 8.592367197 8.387407018 9.370616225 8.418166067 8.745961143 8.588771991 8.976942846 163758893 pulA Carbon cycling Carbon degradation Starch Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 9.028593094 9.120206225 8.907926366 8.314795296 8.475232056 8.918677317 9.175740165 8.674276098 8.729252218 8.489289437 8.437004887 8.71831842 116872885 sigma_70 Stress Sigma factors Listeria welshimeri serovar 6b str. SLCC5334 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria welshimeri; 8.706441912 8.948493628 9.200601957 8.273856096 8.098941332 8.084869704 7.541681076 7.694713249 8.211616404 8.055570454 8.225306926 227195206 pstS Stress Phosphate limitation Lactobacillus ruminis ATCC 25644 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus ruminis; 9.110779595 9.0958068 9.163334284 8.258835642 8.151569479 8.441960652 8.513832693 8.245487488 8.379271218 8.553351522 8.494120996 90415902 glnA Stress Nitrogen limitation marine gamma proteobacterium HTCC2207 8.509109428 8.923776068 8.559056121 8.848991758 8.790469079 9.231360228 9.042353981 8.956901581 9.205305348 8.995030286 9.078591253 152997624 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Marinomonas sp. MWYL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 9.32229794 9.032077283 9.338156388 8.395091405 8.458454596 8.409335739 8.142366321 8.225592824 8.165508117 8.421863889 8.310693687 8.633044251 88772743 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 9.213738521 9.194965819 9.43021186 8.713549606 8.694330627 8.527050633 8.459267163 8.515873733 8.4435181 8.505443027 8.53466643 8.76016607 150036136 sox Sulphur Sulphur oxidation sulfur-oxidizing bacterium OAII2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.89768835 7.926125129 8.267735855 8.105469174 8.354894725 8.097499838 7.797217071 7.929487954 219939177 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.319714445 8.287689189 8.490993985 7.888211619 7.96444422 7.72330346 7.295066642 7.599927756 7.393581084 7.199699152 7.800494588 254403484 sigma_70 Stress Sigma factors Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 9.46471906 9.403920439 9.43268841 9.832397496 9.546586444 9.294138296 9.430046512 10.02131844 9.512988763 9.597447457 9.324031229 9.684691518 148569130 pcc Carbon cycling Carbon fixation Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 8.558371645 8.478472272 8.014706887 8.487916807 8.094406517 7.656233187 7.897741172 7.812286049 7.982919049 8.053234799 239916766 AceB Carbon cycling Carbon degradation others Micrococcus luteus NCTC 2665 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus;species:Micrococcus luteus; 9.25849433 9.182903215 9.045337364 8.513688361 8.992015368 9.02029575 9.666364205 8.61128394 9.593152884 8.783648974 8.534847914 8.704124446 22074061 phtA Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 8.756456842 8.657326919 8.680752366 8.718247883 8.806815449 8.509700526 8.789480288 9.063363086 8.780364595 9.341525156 8.977281987 8.998693921 56708840 nosZ Nitrogen Denitrification Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 7.252304261 7.746173424 7.55194625 7.09330642 6.979871992 7.764584057 7.150585492 7.220284204 7.28502297 37221876 nhh Organic Remediation Aromatics Nitoaromatics Rhodococcus erythropolis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.914302995 8.64973948 8.774978633 7.96525731 7.954415798 8.045456141 8.082508902 7.676776952 8.214796899 7.888835507 7.765933814 8.022610495 145608376 groEL Stress Heat shock Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 9.533119269 8.929541113 9.224728348 9.289434981 9.533040863 9.138146529 9.30107473 9.33622328 8.921786734 8.912990751 9.058643904 8.816338258 158112419 obgE Stress Radiation stress Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.345008105 8.353760969 8.34355346 8.164711756 8.217857002 7.837175856 7.89538885 8.41219736 8.279579093 8.064701561 8.250546862 218243761 pilin virulence pilin Thermus aquaticus Y51MC23 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus aquaticus; 8.877597228 8.843530329 8.963140239 8.359094737 8.199788282 8.14917269 7.713687824 7.748069851 8.229781755 7.718975973 7.940922176 8.291299936 1256708 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.704086846 9.01607424 8.675034216 8.203082817 8.001550805 8.343019804 8.626243448 8.366082222 8.419038644 8.267551942 8.330867129 8.690847744 120589759 pstC Stress Phosphate limitation Acidovorax citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 10.20938802 9.334075895 9.311182125 9.017063403 8.964259275 8.819285377 9.070467288 8.964246167 8.863841592 8.871438933 8.911450228 8.850423475 20977652 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.151810855 8.065708657 8.058053178 7.295679546 7.988146954 8.074961521 8.256902868 7.741688531 13474529 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 9.732631077 9.574496136 9.368817905 9.41639729 8.533951104 9.232763829 9.547119195 9.247718183 9.338939653 8.903585613 9.339895259 9.193820071 219848993 fnr Stress Oxygen stress Chloroflexus aggregans DSM 9485 8.351878048 8.384472923 8.623061137 7.5850718 7.677801793 7.901968424 7.702985694 7.694683879 8.214915137 7.780420491 7.616763447 220932987 pstB Stress Phosphate limitation Halothermothrix orenii H 168 8.944016335 8.929232401 9.116298086 8.489907105 8.329541405 8.299824232 8.255166167 7.901887703 8.218415095 8.053776362 8.077781145 8.421826127 88180879 amyA Carbon cycling Carbon degradation Starch Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 8.149579764 8.177144656 7.752762615 7.809895235 8.041606339 8.123765904 7.266829509 7.264416373 7.749855071 15074413 nagG Organic Remediation Aromatics Aromatic carboxylic acid Sinorhizobium meliloti superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium; 8.28381313 8.354707306 9.156358283 8.954732676 9.019944567 8.560604073 9.015559023 9.38937638 8.787152741 9.211672255 9.253617309 9.139465389 24429540 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.59662923 8.319576135 8.541256464 8.494877017 8.524175313 8.535066553 8.090065057 8.526463613 8.275155541 8.529787563 8.607547525 8.657427214 163744398 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 8.51026291 8.721864864 8.568559398 9.32110346 9.170909737 8.738414313 8.940295489 8.759811214 8.923666071 8.576570817 8.373310559 229473018 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 8.907533871 8.74454942 9.007240779 8.276262362 8.246108573 8.144811269 9.060312981 8.370651258 8.716330733 8.367785731 8.414634765 8.413762355 238760486 ppk Phosphorus Phosphorus utilization Yersinia aldovae ATCC 35236 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia aldovae; 9.080172476 8.988564102 9.056632316 8.446241774 8.424212344 8.282870823 8.092738661 8.199772947 8.383310805 8.007430698 8.095171348 8.515415208 218779566 proV Stress Osmotic stress Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 9.260809139 9.261879478 9.23796393 8.616674617 8.828147357 8.868409379 9.607603426 9.314269251 9.682449691 9.079223884 9.30618422 9.318195621 3165396 bco Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.201074096 8.375653808 8.463112034 7.54621587 7.716800654 7.639473073 8.065822904 7.542347177 8.22822435 7.546349807 7.253286992 7.689657875 119494105 nagG Organic Remediation Aromatics Aromatic carboxylic acid Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 8.626260524 8.613703097 8.804184487 8.170130442 8.052062563 8.11966444 7.950628243 8.525975875 8.313122666 8.056925349 8.200467456 152967241 nitA Organic Remediation Aromatics Other aromatics Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 9.59977664 9.529660278 9.47289475 8.873289547 8.821286312 8.748034594 8.889810901 8.799529367 8.740887338 8.922713422 8.856758529 9.074050481 56709000 norB Nitrogen Denitrification Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 8.557788047 8.428177109 7.980296608 7.645894763 7.659687066 7.988888797 7.79891839 8.185308044 7.695088092 7.715777854 7.779995327 140713617 nasA Nitrogen Assimilatory N reduction uncultured marine bacterium superkingdom:Bacteria; 9.114079815 8.899704914 9.388656746 8.378126495 8.331167676 8.302209771 8.179559327 7.929292251 8.66318567 8.170411958 8.54133778 8.213655161 154795719 obgE Stress Radiation stress Helicobacter cetorum superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter; 8.160647951 8.258216392 7.311552759 7.267613185 6.711432794 7.536932046 7.094707739 7.15120346 7.349796279 69934124 ArsC Metal Resistance Arsenic Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.086934942 7.877805604 8.306719821 7.932601595 7.7852553 7.661225047 7.869051523 8.171911314 8.196054389 8.173262787 7.739769494 8.077669904 56677636 sox Sulphur Sulphur oxidation Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 9.389824161 8.917619997 9.160541919 9.368094151 9.212794519 8.862629756 9.043723938 9.559676382 9.38390216 9.167610797 8.734064271 9.164397915 86140260 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 9.862299096 9.657823738 9.479316911 9.12536375 9.002884074 8.963632629 9.146341718 9.033771651 9.218660616 9.299597729 9.523177857 9.330052279 24347491 ZntA Metal Resistance Zinc Shewanella oneidensis MR-1 8.47410237 8.298026438 9.102821866 7.783803806 7.645457873 7.786696436 7.487671399 7.346542833 7.737742469 7.605103667 7.853234565 150024774 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Flavobacterium psychrophilum JIP02/86 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium psychrophilum; 9.414079882 9.306851505 9.733054873 8.759441485 8.535287169 8.541980258 8.146553601 8.138695513 8.339744488 8.336657589 8.36039067 8.833677872 183176592 sigma_24 Stress Sigma factors Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 8.140161946 7.871046839 8.551424199 8.177580813 8.360430489 8.158956686 7.887483615 8.375809345 8.201477145 8.36221157 8.308828932 8.490432627 73541158 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.547078985 8.762647753 8.587999321 8.270721599 8.284427865 8.604585967 8.755469801 8.751472112 8.447795834 8.671540787 8.732109692 8.604246122 156232035 sigma_24 Stress Sigma factors Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 8.360669812 8.880692939 8.322498837 9.115180595 9.062544941 8.780467988 9.324518337 8.763891829 9.121184683 9.188720202 8.898414751 1245152 dxnA Organic Remediation Aromatics Heterocyclic aromatics Pandoraea pnomenusa 8.141521957 7.957357302 7.837400611 8.017710321 7.725493937 8.231655389 8.12870591 8.116867589 7.804479732 171911993 phoB Stress Phosphate limitation Verrucomicrobium spinosum DSM 4136 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Verrucomicrobium;species:Verrucomicrobium spinosum; 8.508631761 8.187379439 8.616053777 7.679748082 7.697911917 7.918782769 8.095103554 7.802392139 8.338781654 7.632431254 7.94863157 8.091435666 198261783 pstC Stress Phosphate limitation gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 9.961987684 9.461564871 9.627480273 9.295375165 9.303808135 9.057096007 9.481319263 9.248584397 8.865701315 9.218975035 9.291315218 9.33923429 239517007 Tet Antibiotic resistance other Clostridiales bacterium 1_7_47_FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales; 9.725458693 9.587932337 9.68782392 9.011341422 8.844275487 8.795800322 8.819787639 8.513772675 8.703303027 8.886270046 8.828466939 9.171634743 68343070 nmoA Organic Remediation Aromatics Nitoaromatics Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.796331082 8.660001501 8.384611809 8.206337166 8.137401249 7.900444917 8.073905012 8.268839348 8.172358264 8.061733788 8.241204507 189474078 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Lysobacter enzymogenes superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Lysobacter; 9.528339537 9.755580499 9.817117485 9.29592417 9.388704725 9.456142353 9.732418678 9.626837535 9.650132671 9.524790228 9.426343681 9.501747803 49532025 ppx Phosphorus Phosphorus utilization Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 9.564906344 9.64089958 9.697032904 9.164170008 9.218609148 8.987908108 8.967304064 9.501174904 9.155419354 9.505450097 9.288583078 9.441073923 167366432 nagG Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.781482763 9.715909767 9.847855776 9.218730847 9.168863403 9.012501315 8.936523723 8.690736737 8.805139439 8.930709635 9.065794663 9.359245502 170719664 hly virulence hemolysin Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.221539683 7.998531642 8.277576037 7.988096594 7.909110691 7.943675685 8.045539131 7.608255629 8.481051794 7.919455165 7.947229804 7.993996033 56477933 ahpC Stress Oxygen stress Aromatoleum aromaticum EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 8.343045936 8.347021509 8.085390971 7.747263302 7.912520153 7.921604189 7.978600608 8.113756783 8.101443871 8.230538781 7.505423797 145304624 pcc Carbon cycling Carbon fixation Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 8.622344901 8.571966482 8.441226634 7.826370289 8.145891645 8.193606961 8.388124466 7.943058957 8.734366034 7.819373492 7.825820142 7.991227899 83952566 sox Sulphur Sulphur oxidation Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 8.249065881 8.003930817 8.066771224 6.963814565 7.555159246 7.552933463 7.150598855 8.213856995 7.250869722 7.566566098 7.646231361 157011618 AprA Sulphur adenylylsulfate reductase uncultured bacterium 7.680005265 7.585218597 7.335353396 7.143820519 7.760406683 7.989887884 7.659373792 7.39974059 7.602889511 151364295 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Shewanella baltica OS185 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 8.950902021 8.79813024 8.663869408 8.366014501 8.05088785 8.282933069 8.730602782 8.337139451 8.469787451 7.852752873 7.972261722 8.156615648 62390046 mhpA Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium glutamicum ATCC 13032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 9.562932682 9.415249887 9.535395166 8.872843008 8.7259137 8.740961877 8.359148692 8.290459073 8.723430701 8.567749131 8.607813819 8.929117197 163763485 narH Stress Oxygen limitation Bacillus selenitireducens MLS10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus selenitireducens; 9.261694565 9.413266201 9.445550696 8.765123777 8.564647475 8.566975755 8.709961639 8.523201689 8.529833421 8.570125003 8.356648262 8.914066 242132817 obgE Stress Radiation stress Dickeya dadantii Ech703 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 8.790575005 8.75071497 8.806701166 8.04043102 7.855932297 7.933604519 7.412154805 7.457988061 8.158338796 7.72353934 7.721070498 7.868209649 146403579 phn Organic Remediation Herbicides related compound Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 8.89008432 8.813515519 8.812397502 8.65505913 8.931581501 9.173229724 8.779181799 8.758527177 9.021060406 8.417150308 8.77206745 8.545460296 77165733 pilin virulence pilin Nitrosococcus oceani ATCC 19707 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 8.42882683 8.402502756 8.507289188 7.814511714 7.761541329 8.298118133 8.373920803 7.795115351 8.57752696 7.90193969 7.802296931 7.668660259 29606960 TerD Metal Resistance Tellurium Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 9.921434234 9.5786818 9.409310458 9.799621164 9.676520628 9.486932874 9.914179407 9.737314313 9.621339129 9.700431444 9.643250904 9.382726469 171997969 narI Stress Oxygen limitation Burkholderia ambifaria MC40-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 9.100310845 9.239222225 9.082912236 9.064665898 8.970341361 8.993261729 9.468011288 9.107425029 9.328822145 8.907209232 8.918612236 8.890840874 186459891 amyA Carbon cycling Carbon degradation Starch bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 8.540562108 8.415347518 8.735766908 8.107165488 8.079359101 7.782121324 7.865002966 7.768053858 8.333023389 7.968790649 7.733776621 8.143062763 194683717 TerD Metal Resistance Tellurium Proteus mirabilis HI4320 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 9.143242523 8.900391419 9.033810039 8.376854522 8.41789909 8.260697433 7.982521387 7.913121678 8.105235744 8.155461761 8.456699021 146402341 hrcA Stress Heat shock Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 8.721770618 9.007917742 8.918436194 8.822847377 8.680651431 8.521151107 8.392377412 8.746661829 8.646156202 8.564265679 8.628192044 8.236267138 163746219 oxyR Stress Oxygen stress Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 9.517704109 9.350906866 9.728414657 9.150001095 9.012803355 8.79423598 9.207994447 9.135861344 9.390897005 9.313392581 9.377684571 9.465466815 268315626 sigma_24 Stress Sigma factors Rhodothermus marinus DSM 4252 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 9.714860175 9.454677356 9.527376577 9.303439874 9.257232673 8.95344862 9.050272861 9.259884893 9.271991467 9.398590165 9.470112767 9.476770938 84502903 nhh Organic Remediation Aromatics Nitoaromatics Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 9.62177036 9.553650883 9.587284695 9.718872801 9.513634292 9.526403075 9.724480214 9.76820711 9.783961945 9.78093413 9.738329733 9.668729451 39944310 nagG Organic Remediation Aromatics Aromatic carboxylic acid Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 8.419180813 8.570462157 7.988885366 7.825828167 7.973187426 7.723392221 7.826009118 8.489341901 7.874737712 7.95110003 8.209708266 169828489 ArsC Metal Resistance Arsenic Lysinibacillus sphaericus C3-41 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Lysinibacillus;species:Lysinibacillus sphaericus; 8.901090348 8.451440848 8.703698175 8.826567872 8.145185685 8.434077253 8.2932166 8.21449935 167747118 sigma_24 Stress Sigma factors Anaerostipes caccae DSM 14662 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Anaerostipes;species:Anaerostipes caccae; 9.232933816 9.133631776 9.285298608 8.98778128 8.999033476 8.749081391 9.107962126 9.668208067 9.103979904 9.337980647 9.04361811 9.265561911 67153747 tfdA Organic Remediation Aromatics Chlorinated aromatics Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 8.515543937 8.5444642 8.183729526 7.44519329 8.145288013 7.888048875 8.336331871 7.648866182 8.250456201 7.750152127 7.845066155 7.860648092 154350455 clpC Stress Protein stress Bacillus amyloliquefaciens FZB42 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 8.729947906 8.355335044 8.569968953 7.90888336 7.918637304 8.016319828 7.917312576 7.933006452 8.066500415 7.955753993 7.956055798 8.078911939 238917142 phoB Stress Phosphate limitation Eubacterium eligens ATCC 27750 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium eligens; 8.229582688 7.987358177 8.308906552 7.382952921 7.533950156 7.458953856 282571923 Tet Antibiotic resistance other Subdoligranulum variabile DSM 15176 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Subdoligranulum;species:Subdoligranulum variabile; 8.527008622 8.530694112 8.660722792 8.126965366 7.979529823 8.194038843 8.640551274 8.161033704 8.748715379 7.953587608 8.248082143 8.185870948 260590675 sigma_70 Stress Sigma factors Prevotella veroralis F0319 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella veroralis; 7.398435601 7.143528567 7.660749489 6.985851467 6.873613599 6.975064937 7.108179893 7.346211772 38490083 xlnD Organic Remediation Aromatics Other aromatics Silicibacter pomeroyi 9.522676384 9.435310361 8.927255869 9.439384014 9.353964533 9.678570382 9.915865743 9.650355196 9.2688014 9.26228865 9.481947811 9.278173947 71908949 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 8.102761746 8.50827345 8.129381591 7.748224945 7.977738577 8.077952703 8.102646134 7.690543274 8.187229587 7.738679757 7.810919904 7.509485768 283781936 sigma_24 Stress Sigma factors Pirellula staleyi DSM 6068 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Pirellula;species:Pirellula staleyi; 8.885205467 8.541857162 8.433130073 8.769051039 8.994414137 8.635791126 8.443433546 9.092338233 8.630381254 8.900293264 8.699938448 8.557402273 88062456 dsrA Sulphur sulfite reductase uncultured Desulfohalobiaceae bacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae; 9.390862843 9.411300675 9.364333691 9.388525076 9.078857126 8.62589671 9.181198867 9.16913491 9.199164445 9.397751847 9.360014589 8.899908466 27349338 linB Organic Remediation Pesticides related compound Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.563525835 8.7907103 7.774477942 8.839391592 8.424809738 8.410383002 8.102674061 8.006716367 8.350883437 7.915515778 256735945 cda Carbon cycling Carbon degradation Starch Parabacteroides sp. D13 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides; 8.514372797 8.418864917 8.556933469 7.598489271 7.773890965 7.755961015 7.286483627 7.10824339 7.395558151 7.335864392 7.713623605 196166905 bphA Organic Remediation Aromatics Polycyclic aromatics Acidovorax sp. NA3 9.264913262 9.201960416 9.480720639 8.733242803 8.441589158 8.37490867 8.181849648 8.319701174 8.527904542 8.26160986 8.244196648 8.773776544 68264736 alkK Organic Remediation Others Corynebacterium jeikeium K411 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 9.054982793 9.197819477 8.993215259 8.530835041 8.321424356 8.652985124 8.905293979 8.462916446 8.895097109 8.324891499 8.514231582 8.590705463 167588714 fnr Stress Oxygen stress Burkholderia ubonensis Bu 8.619519239 8.251584586 8.634614956 8.069265199 8.196692442 7.735744603 7.738731835 8.339464751 8.188734046 8.075625064 8.397608426 8.385169927 83814442 phoB Stress Phosphate limitation Salinibacter ruber DSM 13855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 9.040804491 9.340491198 9.021829605 9.36026421 9.801663088 9.246805891 9.42043876 9.192618077 9.251856841 258584328 pilin virulence pilin Vibrio mimicus VM573 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 8.447852475 8.11113009 8.3301965 7.616643013 7.565462052 7.244430497 7.584831426 7.188525301 7.559921777 7.780310835 7.816044714 87301590 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.376644451 8.298888332 8.24172863 8.098130745 8.026882796 7.803979034 8.609283102 8.466662496 8.313227878 8.372666608 8.005127545 15026850 tfdB Organic Remediation Aromatics Chlorinated aromatics Burkholderia cepacia superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.553662809 8.149508129 8.817798976 8.748320253 8.715394819 8.396645379 8.558791847 8.842523095 8.683025572 8.752298917 8.587132025 8.802349655 148547688 fnr Stress Oxygen stress Pseudomonas putida F1 9.168850181 9.134040229 8.924726428 8.700915434 8.810874852 8.500590482 8.841470104 8.352200339 8.76828125 8.810712109 8.920797659 119376530 pimF Organic Remediation Aromatics Aromatic carboxylic acid Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.451880929 8.659755469 8.695783003 8.524686886 8.545880185 8.409893801 8.476431731 8.647440076 8.587195797 8.562274549 8.457327425 8.570676287 57234837 rd Organic Remediation Chlorinated solvents Dehalococcoides ethenogenes 195 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides;species:Dehalococcoides ethenogenes; 9.161469508 9.119658921 8.825495398 8.204543711 8.344435835 8.598579213 8.823980014 8.497990024 9.021839704 8.30887043 8.323488469 8.077063879 15026923 Fe_S_cluster_binding_protein Bioleaching Electron transport Acidithiobacillus ferrooxidans 9.041482447 9.033070015 9.115482095 8.654937565 8.644369827 8.418505039 8.605153185 8.449499423 8.782368469 8.659252135 8.692570809 91799149 pstC Stress Phosphate limitation Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 8.068893987 7.747575299 7.609420991 8.228101535 7.938219545 7.811446621 7.615815701 7.539746434 163763487 narI Stress Oxygen limitation Bacillus selenitireducens MLS10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus selenitireducens; 8.464244531 8.649650721 8.764075849 7.809580444 7.990034788 7.900857765 7.373196739 7.216250609 7.509139249 7.403712369 8.081042897 196112202 nitro Organic Remediation Others Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 8.346001792 8.279804489 8.587453493 7.738397024 7.851818114 7.528950212 7.035298571 7.111400935 7.796438333 7.679471432 7.662831646 7.690933634 106013289 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.1660467 8.044839825 7.527690158 7.541723932 7.352767459 7.264426375 7.191579315 7.810137105 7.437566556 7.256432369 7.618702422 188932184 sigma_38 Stress Sigma factors Sulfurihydrogenibium sp. YO3AOP1 8.438619811 8.534626001 8.806824696 7.805824958 8.006332615 7.692799578 7.573771242 7.700409881 7.798354431 192813532 CadA Metal Resistance Cadmium Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 9.018160637 8.854227875 8.952627968 8.766164689 8.266560878 8.979968987 8.86923134 8.917590322 9.294268735 9.054539115 9.145502159 9.142931126 68348555 bphA Organic Remediation Aromatics Polycyclic aromatics Pseudomonas fluorescens Pf-5 8.954337362 9.086724966 9.131368742 8.438738331 8.492787282 8.863238343 8.985208431 8.433068376 8.850325824 8.530943427 8.566671262 8.500128849 241766746 pcc Carbon cycling Carbon fixation Acidovorax delafieldii 2AN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax delafieldii; 9.18030226 9.297182134 9.20485791 8.710442579 8.671568496 8.629561174 8.383101852 8.450672856 8.496290642 8.572425323 8.558028031 8.587202902 56908062 alkJ Organic Remediation Other Hydrocarbons Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 8.854464072 8.667668722 8.742750102 8.642027737 8.46057362 8.506494031 8.502089678 8.567705414 8.528786124 8.5567767 8.434121892 8.326009317 120590008 pimF Organic Remediation Aromatics Aromatic carboxylic acid Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 8.523452784 8.252870328 8.602215848 8.422177893 8.449129703 8.272486252 8.207407268 8.503542571 8.531500764 8.560699328 8.573132102 8.673345582 90856159 sox Sulphur Sulphur oxidation Allochromatium vinosum superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium; 9.615132035 9.428749606 9.375522463 9.296639256 9.186492623 8.78913927 9.519681056 9.347539623 9.552244456 9.233090636 9.149217066 9.276996713 219868142 phoB Stress Phosphate limitation Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 8.327666747 8.353896215 8.457120532 7.514169848 7.765500803 7.885763008 7.872113376 7.560484273 8.093493203 7.631755668 7.50418851 8.055408791 262351005 iro virulence Vibrio sp. RC586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.655114687 8.658811729 8.571087342 7.546241455 7.68200994 7.983298914 8.258369633 7.766544142 8.143036649 7.82290088 7.97338548 8.249576202 82570672 lip Carbon cycling Carbon degradation Lignin Ceriporiopsis rivulosa 7.362412117 7.58451306 7.408668344 7.386763328 7.368679479 7.73696554 7.499207363 7.722268579 7.911219801 90425497 AceB Carbon cycling Carbon degradation others Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.359459505 8.530920729 8.376460965 7.827382987 7.718229906 7.917785633 8.412256329 7.824594124 8.444403728 7.819244213 7.859899257 7.812628156 256800395 iro virulence Streptomyces viridochromogenes DSM 40736 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 8.375253185 8.083699062 8.550234305 8.355821379 8.221880866 8.392770213 8.279744062 8.232688046 8.097583211 7.926665182 8.447523165 124008106 gyrB other category gyrB Microscilla marina ATCC 23134 8.312667537 8.263939417 7.763380688 7.638567573 7.767097445 6.987845703 7.558987813 7.830673574 7.417480915 7.560172051 7.747844762 197779021 pulA Carbon cycling Carbon degradation Starch Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 8.222957522 8.047823289 7.775783108 8.240711459 8.119307183 8.126906335 8.169643158 7.897439682 8.016406496 17427792 alkK Organic Remediation Others Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 8.613012033 8.718765653 8.728414056 8.624031956 8.578391259 8.420558063 8.720375262 8.560714533 8.77976986 8.598032049 8.739162235 8.311912515 68536710 sigma_24 Stress Sigma factors Corynebacterium jeikeium K411 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 8.491767175 8.540287023 8.487014399 7.814338111 8.006219084 8.233016495 8.472760259 7.725032628 8.47723891 7.872118109 8.161353733 7.94665913 145224906 pcc Carbon cycling Carbon fixation Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 9.039812447 9.192210642 9.265807386 8.809176665 8.697413398 8.728015764 8.51393417 8.427662586 8.553329748 8.534950932 8.636140348 8.844675167 116122570 TerC Metal Resistance Tellurium Leptospira borgpetersenii serovar Hardjo-bovis L550 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira borgpetersenii; 8.510453701 8.449991042 7.919341183 7.853673771 7.842438726 7.580476644 7.471735831 7.856578346 7.688195009 7.803628741 8.083140058 146192101 tfdB Organic Remediation Aromatics Chlorinated aromatics Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.540752332 8.491825451 8.432178519 8.128973101 8.297280528 8.296740797 8.299026181 8.333933072 8.281689418 8.529053126 8.811209764 8.635223067 261282862 fnr Stress Oxygen stress Geobacillus sp. Y412MC10 8.994134867 9.029076905 8.740265 8.52844315 8.253824072 8.528129683 9.087804864 8.57558885 8.902317842 8.569100673 8.273851729 8.527122309 169793580 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 9.139698437 9.167902088 9.244873297 8.559524183 8.327250509 8.384130265 8.500634547 8.00519776 8.293144231 8.344782234 8.226076887 8.608427089 219563168 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 8.869272953 8.782846473 9.054824519 8.234398729 8.165561899 8.151473062 7.813089015 7.965738022 8.112448722 8.111106537 8.16314623 8.157832085 219678496 B_lactamase_C Antibiotic resistance Beta-lactamases gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.965055065 9.180861164 8.701084604 8.439207391 8.640235607 8.152549591 7.92101855 8.316869942 8.150067055 8.185870672 8.530950396 163812727 hrcA Stress Heat shock Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 8.748030627 8.864167673 8.820446171 8.416984441 8.414558962 8.299415672 8.309944857 8.22854111 8.298638193 8.383943054 8.38536762 8.651581079 251792642 MATE_antibiotic Antibiotic resistance transporter Aggregatibacter aphrophilus NJ8700 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Aggregatibacter;species:Aggregatibacter aphrophilus; 8.049719918 7.939074367 8.312638362 7.221554597 7.032904032 7.435288507 7.177425194 6.997521317 7.673572984 7.2596737 7.314862341 7.411876995 146283407 trzN Organic Remediation Herbicides related compound Pseudomonas stutzeri A1501 8.668399318 8.555828026 8.323881036 8.398733284 8.505119875 8.457263385 8.49328281 8.485844435 8.03765558 116609764 katE Stress Oxygen stress Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8.869209103 8.978088924 8.922146189 8.268371805 7.873036762 8.241660675 8.203944605 7.575463665 8.256499494 8.022225693 8.206513656 8.480582385 84694317 CopA Metal Resistance Copper Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8.473525179 8.433267649 8.142726249 8.624388602 8.016825582 7.949529081 8.271102696 8.238703696 8.254837453 8.157363876 8.063150448 8.18392688 260578582 ahpC Stress Oxygen stress Corynebacterium jeikeium ATCC 43734 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 8.489082848 8.537569756 8.398735616 8.542930812 8.51058484 8.237483926 8.474250834 8.801279879 8.571700125 8.834084648 8.677612476 8.849975215 113526420 bphA Organic Remediation Aromatics Polycyclic aromatics Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.369192651 8.527502675 7.560188954 7.914428471 8.587435993 8.190827448 7.619697657 7.760693789 8.033766202 212703866 dsrA Sulphur sulfite reductase Desulfovibrio piger ATCC 29098 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio piger; 8.634965936 8.587894146 8.466189842 8.443136374 8.376110857 8.296442107 8.486269335 8.765778254 8.589298701 8.90063924 8.694218499 8.659267451 78355720 proV Stress Osmotic stress Desulfovibrio desulfuricans subsp. desulfuricans str. G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 8.851586009 8.645044489 9.122770624 9.057322389 8.745185364 8.635638266 150836911 fnr Stress Oxygen stress Marinomonas sp. MWYL1 8.990437922 8.551925042 8.93366221 8.378252522 8.658410398 8.462459175 8.761978278 9.090889154 9.072832534 9.239118087 9.294640417 9.111154562 31337508 rd Organic Remediation Chlorinated solvents Dehalobacter restrictus 8.874133303 8.903458805 8.749527954 7.678883438 7.94569585 7.990285859 7.771792731 8.354833128 7.991517105 7.596745095 7.866729383 134096754 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 8.828657373 8.255261278 8.6446434 8.575746543 8.276377497 8.293300825 8.427453863 8.168660673 8.583362128 8.415418538 8.402082663 8.471267889 225155489 sigma_24 Stress Sigma factors Opitutaceae bacterium TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 8.333711507 8.011230372 8.119359788 7.954996323 7.882901995 7.666096145 8.284896167 8.209485807 8.055662249 8.115079446 229499278 narH Stress Oxygen limitation Geobacillus sp. Y412MC52 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.858457061 8.883788473 8.765981663 8.626201369 8.262886256 8.939395432 8.932046281 8.555281853 8.914780946 8.545988181 8.726861884 8.824359521 113733457 CopA Metal Resistance Copper Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.940754667 8.832628401 8.776774716 8.666928173 8.580347443 8.434261058 8.339788619 8.772353457 8.742253395 8.858759823 8.939591355 9.018279419 145577568 fnr Stress Oxygen stress Pseudomonas mendocina ymp 8.273520165 8.682170435 8.804611598 9.228911409 9.260535776 9.352916162 9.071425496 9.410830111 8.928432103 9.315470118 9.510877442 8.851294218 19909605 gyrB other category gyrB Halomonas halmophila superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 8.059425744 8.13658185 7.544709796 7.339692853 7.525966023 7.819841994 7.252644101 8.021180032 7.45056325 7.211536163 7.372038549 218716833 amyA Carbon cycling Carbon degradation Starch Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 8.184870276 8.140410357 8.218802095 8.162226849 8.138259753 8.075383612 7.570067259 8.181600331 8.24607141 7.858179433 7.766895598 7.991946252 16412616 catB Organic Remediation Aromatics BTEX and related aromatics Listeria innocua superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria; 8.307218087 8.882396663 8.767832484 8.312706568 8.330641518 8.090125221 8.146239584 8.477694622 8.427003662 8.52634853 8.236484673 8.431530979 217979123 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 8.195589425 7.885027625 7.693027525 7.594167355 7.85707931 7.429516678 7.629813986 7.859880144 7.585140432 7.754438964 7.307205874 118616210 proO Organic Remediation Aromatics Other aromatics Mycobacterium ulcerans Agy99 8.466348525 8.271814747 7.662853339 7.334130606 7.945878737 7.846626489 7.637742129 8.25278849 7.555838973 7.902079442 7.73742406 220712744 CopA Metal Resistance Copper Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.632098331 8.255722112 8.363452649 8.538080372 8.484113139 8.584492158 8.301694796 8.402597141 8.463221214 8.469604606 84043029 pcaG Organic Remediation Aromatics Other aromatics uncultured bacterium 8.181959956 7.921761328 8.085186878 7.454047275 7.583635008 7.805956147 7.837827677 7.428264329 7.974960338 7.551417097 7.598818301 7.501778103 7208813 endoglucanase Carbon cycling Carbon degradation Cellulose Clostridium thermocellum superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 8.369357463 7.943952657 7.081326192 7.159732269 7.437416716 220712554 iro virulence Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 11.06995365 10.93352458 10.64196275 9.672693773 10.42140882 10.84415017 9.883792508 10.85038609 9.81039439 9.913917866 9.876175778 160917611 narG Nitrogen Denitrification uncultured bacterium 9.454847469 9.226787985 9.244319268 8.603456363 8.322705533 8.333767073 8.139446892 8.089689974 8.466501988 8.143281596 8.757866601 120611678 ChrA Metal Resistance Chromium Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 8.617228645 8.291422174 8.466222163 8.405111652 8.210026216 8.283333406 8.571498255 8.372266292 8.469834385 8.283267462 13249567 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.019959109 8.04407996 8.200819787 8.066201149 7.806039968 7.93476162 7.517435315 8.02958818 7.970663608 7.974805258 7.941923473 7.391181656 76558687 glnA Stress Nitrogen limitation Natronomonas pharaonis DSM 2160 8.888233684 8.782680701 8.896204335 8.746024269 8.523974498 8.481810605 8.443649354 8.778612428 8.842972444 8.920902487 8.932439003 8.970068728 106013321 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.246639711 7.778789941 7.667215956 7.673451035 7.750323621 7.631871174 7.873723937 7.418584475 225016327 Tet Antibiotic resistance other Clostridium methylpentosum DSM 5476 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium methylpentosum; 8.172709904 8.120155313 8.360986793 7.953810497 7.637890098 7.815493313 7.825401968 7.828807376 7.83391273 7.925284279 7.761155996 7.920270606 224944362 ABC_antibiotic_transporter Antibiotic resistance transporter Corynebacterium matruchotii ATCC 33806 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium matruchotii; 8.301111815 8.068207805 8.349912129 8.214192413 7.86362416 7.701816599 7.888246119 7.841411422 8.297420852 7.830576864 7.649243248 7.585090631 119377250 SMR_antibiotics Antibiotic resistance transporter Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 9.012561773 9.163164172 8.791417289 8.785783399 8.762947855 9.023988936 9.296162082 8.84199266 9.223830548 8.667741457 8.688188103 8.666532654 116494875 hly virulence hemolysin Lactobacillus casei ATCC 334 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus casei; 7.261687247 7.121104411 6.924348442 6.780409068 6.568723035 7.5354393 257055085 ahpC Stress Oxygen stress Saccharomonospora viridis DSM 43017 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora viridis; 10.42473529 10.71003342 10.46039623 9.367105387 9.175176956 9.818444367 9.716263169 9.430115264 10.08954634 9.763692343 9.870639065 9.894290384 167585208 ChrA Metal Resistance Chromium Burkholderia ubonensis Bu 8.209959274 8.512470842 8.534095705 8.53990142 8.443190566 7.900807379 8.283217017 8.985557827 8.312162671 8.307278501 8.099637615 8.468899406 66045818 iro virulence Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 9.005246241 9.122112049 8.786135827 8.239874453 7.252794813 8.327890567 8.174217334 8.105232136 8.181206036 8.25424304 90106694 fnr Stress Oxygen stress Rhodopseudomonas palustris BisB18 8.969567875 8.880340571 9.119573469 8.676866016 8.609659666 8.43723061 8.238334403 8.580874761 8.631789792 8.578145232 8.581207033 8.840211341 170079490 nhh Organic Remediation Aromatics Nitoaromatics Synechococcus sp. PCC 7002 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 10.29284984 9.619344121 9.721095721 10.01082081 10.04792706 9.867740041 10.19480801 10.18504996 10.09466003 9.862115569 9.791525106 9.806936828 254983038 cytochrome Energy process Energy process Geobacter sp. M18 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.787898362 8.942466238 9.003707149 8.306294688 8.13106627 8.064201609 8.346156571 8.116769691 8.508867375 8.178966927 8.014413698 8.22613303 29606233 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces avermitilis MA-4680 8.724854575 8.896972652 8.860734841 7.874738431 7.966518761 7.935058995 8.367877713 8.090800767 8.364914965 8.252685866 8.073935521 8.267876698 68518471 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Shewanella baltica OS155 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 8.473871521 8.556989416 8.850336542 8.605614503 8.332261125 8.226366202 8.327986588 8.349632315 8.761188969 8.379465393 8.213819066 8.144606997 76577420 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.562522788 8.577286968 8.487490411 9.004950185 8.869904158 8.94644353 8.456307797 9.174070508 8.844594504 8.902364043 9.214179964 114771065 ppx Phosphorus Phosphorus utilization alpha proteobacterium HTCC2255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.460767051 8.358626281 8.554266083 8.16594517 8.116107936 7.78154918 7.114283621 7.502320945 8.031823417 7.774178212 7.925451453 7.772117111 33564608 atzA Organic Remediation Herbicides related compound Bordetella pertussis Tohama I superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella pertussis; 9.736608656 9.591104677 9.713879891 9.288492442 9.123296012 9.052225373 8.347531464 8.441318086 8.772450824 8.785633148 9.024847943 9.020915637 238062995 clpC Stress Protein stress Micromonospora sp. ATCC 39149 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 8.343186894 8.585139259 8.35932663 7.609617444 8.76661415 8.639174115 8.463304799 8.702438202 8.769977864 8.333215671 226940975 pcc Carbon cycling Carbon fixation Laribacter hongkongensis HLHK9 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Laribacter;species:Laribacter hongkongensis; 8.317528464 8.233569843 8.265850407 7.605756093 7.322886888 7.566320738 7.704293593 7.422964693 7.860445046 7.547808326 7.531964233 7.841841823 223583479 CopA Metal Resistance Copper Tolumonas auensis DSM 9187 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Tolumonas;species:Tolumonas auensis; 9.33979213 9.120324531 9.633344549 8.752092562 8.742237546 8.540987468 8.553587614 8.338363557 8.570992467 8.462579813 8.881948919 241880985 hydrogenase Energy process Energy process Desulfovibrio vulgaris RCH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 7.458367509 7.880129828 7.921846614 7.575860851 8.151804589 7.366218864 7.715433109 7.566385476 85069184 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.555330709 8.553751247 8.646599398 8.007453642 7.931036425 7.977312808 7.65307564 7.617504595 7.9943645 7.901825059 7.977807907 8.051401257 77683937 ChrA Metal Resistance Chromium Alkaliphilus metalliredigenes QYMF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus metalliredigens; 9.125287681 9.052309324 9.167295147 8.532223936 8.471373624 8.640969045 8.476222883 8.549689865 8.511297597 8.485083241 8.593046872 8.766805431 126732051 glnA Stress Nitrogen limitation Sagittula stellata E-37 8.572515909 8.428442971 7.743080933 8.268261367 8.250166758 8.835177477 7.301300917 8.577369821 7.962440866 8.011812867 8.083334331 110678868 norB Nitrogen Denitrification Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 8.574240125 8.620837166 8.787748377 8.414905906 8.170516453 8.126271566 8.06400875 8.268275734 8.372241266 8.171695354 8.036752063 8.352721463 49239849 ppk Phosphorus Phosphorus utilization Bartonella quintana str. Toulouse superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella quintana; 8.593290953 8.45001994 8.718190342 7.937705701 8.024573369 7.810749711 7.643155965 7.86827613 8.272071857 7.863439231 7.603906327 8.323268688 227864465 ppk Phosphorus Phosphorus utilization Lactobacillus ultunensis DSM 16047 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus ultunensis; 8.273923065 8.483923354 7.74069698 7.915186122 7.553083945 7.369103567 7.323276511 7.577017918 99083183 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.445259621 8.425633966 8.574530489 8.058567225 8.146017122 8.152885284 8.007875959 8.266936882 8.324724565 8.282715242 8.215775151 8.084865154 160917573 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.390648954 8.373581117 8.233874584 8.231716834 8.230493181 8.122672777 7.977077646 8.269150826 8.139733911 8.262852106 8.367748462 8.151401521 197624841 ChrA Metal Resistance Chromium Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 9.770238509 9.750781656 9.719065403 9.308244021 9.301874996 9.262354804 9.38251454 9.303715643 9.253413372 9.409905987 9.420767184 9.478678403 92114257 fnr Stress Oxygen stress Chromohalobacter salexigens DSM 3043 9.43000772 9.137094696 9.046426465 8.960181018 8.757935218 8.681693468 9.068476297 8.938006714 8.981287576 9.032982416 9.077285393 8.827867224 197714149 xylC Organic Remediation Aromatics BTEX and related aromatics Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 8.69534431 8.835030746 8.788308378 8.691622285 8.711097026 8.549790891 8.640064214 9.272069963 8.794715946 9.254399683 9.293880264 9.234141378 145048437 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Polynucleobacter sp. QLW-P1DMWA-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 8.199816903 8.338641759 8.245654258 7.504802706 7.410906502 7.280529162 6.847305416 7.450267963 7.716560851 7.572386892 7.362941722 7.660382871 62003505 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.45897771 8.525092505 7.933794582 8.043044796 7.982557279 7.844931622 7.938213777 8.092914558 8.287168721 8.090385012 8.191011825 158331758 iro virulence Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 9.183928515 8.94784376 9.10632928 8.824915256 8.793716415 8.700676285 8.893228131 9.046802973 8.921748721 9.066729365 9.018097302 9.304175261 113935157 PobA Organic Remediation Aromatics Aromatic carboxylic acid Caulobacter sp. K31 8.276909414 8.517630423 8.248475092 7.710454684 7.888006585 7.804933354 8.152055314 7.79025848 8.230300152 7.679592601 7.786332453 7.545970741 55978116 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9.954407892 9.926954668 10.09293992 9.309687901 9.296867595 9.250899532 9.172152266 9.180230682 8.977711658 9.373602644 9.416250796 9.611173133 72122182 HBH Organic Remediation Aromatics BTEX and related aromatics Ralstonia eutropha JMP134 8.728255143 9.058655468 9.010364048 8.985850134 8.936383184 8.706642267 8.9441269 9.381133189 9.102331021 9.225796745 8.967081395 9.170730592 33566921 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Bordetella bronchiseptica RB50 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella bronchiseptica; 8.504050279 8.500904287 8.247406082 8.170852316 8.071831739 8.222196899 8.576949447 7.945719994 8.352656004 8.201443946 8.04500374 8.086876064 126233845 ArsC Metal Resistance Arsenic Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 9.766696047 9.508382908 9.307674417 9.697951942 9.153875959 8.861541554 9.451780943 9.025349005 9.413924384 9.291739589 9.400596183 9.144525739 214044111 ppx Phosphorus Phosphorus utilization Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 9.427459593 8.563110069 8.907810098 9.072949485 9.263106425 218295835 hrcA Stress Heat shock Thermus aquaticus Y51MC23 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus aquaticus; 9.082036819 9.060277926 8.992282096 8.529921444 8.465073255 8.325364133 8.302367831 8.235100868 8.322320639 8.115521745 8.544681085 221722934 ppk Phosphorus Phosphorus utilization Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.319752913 8.690119282 8.324171456 7.946329346 8.251068833 8.97647367 8.343039582 8.492225479 7.909795762 8.14562047 8.027611939 193201230 scaffold Bacteria phage STRUCTURAL Yersinia phage Yepe2 order:Caudovirales;family:Podoviridae;genus:T7-like viruses; 8.71679705 8.27161532 8.037208778 8.141993463 7.977033323 7.807193028 8.065848846 8.025842368 8.238490085 8.046016615 8.15633014 256815151 sigma_24 Stress Sigma factors Streptomyces griseoflavus Tu4000 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoflavus; 8.613736353 8.773875461 8.411479181 8.503291831 8.357451023 8.185487418 8.360752989 8.310955898 8.550421506 8.564906545 8.458635442 8.28834676 169189458 TehB Metal Resistance Tellurium Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 8.537778921 8.20255185 8.14671949 8.313782999 8.29223976 8.141922185 8.501410505 8.530853708 8.482612166 8.604994826 8.467014931 108760263 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 8.556900615 8.594326228 8.630933132 8.532883455 8.500472029 8.200550086 7.882616949 8.079177461 8.13844522 8.068215044 8.492372626 227341127 Tet Antibiotic resistance other Rhizobium sp. NGR234 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 8.44765783 8.168244812 7.296903092 7.403800243 7.741345832 7.985946752 7.515509406 8.273471748 7.379304222 7.440876862 7.322322574 169627987 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium abscessus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.271190337 8.518528249 7.909062629 7.872083977 7.72361266 7.607108719 7.742113616 8.225232838 7.971401526 7.921262433 8.00178462 121554533 fnr Stress Oxygen stress Verminephrobacter eiseniae EF01-2 8.815045752 8.890899936 8.466753967 8.421100741 8.505626319 8.407105521 8.63425552 8.830428149 8.732346615 9.007420684 8.870026631 8.623138922 118462966 CDH Carbon cycling Carbon degradation Cellulose Mycobacterium avium 104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 8.956662606 8.835851553 9.362808512 8.743039494 8.816279522 8.666414951 8.870263465 9.07136066 8.987119192 9.032804564 8.933366056 8.995841018 110679091 sigma_70 Stress Sigma factors Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 9.819222568 9.264404658 9.712240696 8.698060199 8.407630518 8.873915422 9.098504549 8.553742898 9.332379361 8.735710403 9.024735425 9.342545373 83571727 helicase_family_4 Bacteria phage REPLICATION Enterobacteria phage K1E order:Caudovirales;family:Podoviridae;genus:SP6-like viruses; 8.66619593 8.664868893 9.1630273 8.257256837 8.017200946 8.03420594 7.734011731 7.429026318 7.951259363 7.924409619 7.970316133 7.944498011 56696859 obgE Stress Radiation stress Ruegeria pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 9.675742656 9.372280631 9.202058665 9.721586147 9.455695001 9.483115189 9.827942233 9.722232467 9.284665608 9.202422516 9.357788645 9.276310635 188144432 cap virulence capsule Helicobacter pylori Shi470 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter pylori; 8.015353013 7.78366341 8.212422503 6.894718872 6.932152055 7.09495918 6.971779574 7.464298123 6.810491542 7.081175138 7.62121097 150274269 tutFDG Organic Remediation Aromatics BTEX and related aromatics Bacteroides capillosus ATCC 29799 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides capillosus; 8.935790195 8.790227066 8.905372481 8.259109739 8.246111349 8.254666464 7.93973814 7.528400426 8.31526963 8.054348117 8.218755835 8.556693376 148503104 katE Stress Oxygen stress Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.972862213 9.028765045 8.802201286 8.785288721 9.150765087 8.884067706 9.280228934 9.065844039 8.766695106 8.899609121 9.151716701 8.833808858 240170880 B_lactamase_C Antibiotic resistance Beta-lactamases Mycobacterium kansasii ATCC 12478 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 9.616789833 10.02421263 9.323969964 9.344594821 9.121862498 10.3701269 9.26770877 83025984 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 8.406190717 8.332134458 8.684248615 7.656758597 8.137333489 8.266709289 8.369808233 7.242310297 8.527232434 7.635618289 7.94108055 7.948841706 144900227 pstB Stress Phosphate limitation Magnetospirillum gryphiswaldense MSR-1 9.108994341 9.016629999 8.895215618 9.028512401 8.897051971 8.947907557 9.332484166 9.519754163 9.21344395 9.355063035 9.421085367 9.583649491 157374553 AceB Carbon cycling Carbon degradation others Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 8.807349063 8.678474124 8.890564002 8.219365225 8.118215181 7.930380079 7.76076551 7.874051743 8.123209881 8.060604697 7.892248395 8.232806203 119355449 cap virulence capsule Chlorobium phaeobacteroides DSM 266 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 7.428095363 7.350107795 7.252163353 7.387959669 7.140089052 7.574238718 7.211416336 7.409226273 7.055272419 94471271 narG Nitrogen Denitrification uncultured bacterium 8.970692275 9.065059245 8.704597016 9.106603869 9.297984075 9.155499227 9.428927296 9.438955328 8.982515493 9.113024257 9.335020105 9.331073274 83944012 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 8.414090781 8.581274704 8.663049824 8.227286728 7.852301193 8.13088628 8.248182401 7.862117503 8.251596294 8.109135104 7.800705981 8.160243999 77459481 TerC Metal Resistance Tellurium Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.488749869 8.450034371 8.53291077 8.007017039 8.109448154 7.934612477 7.865328822 8.100987359 7.970025379 8.01072207 8.070325573 7.915702605 134052105 nitA Organic Remediation Aromatics Other aromatics Desulfotomaculum reducens MI-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum reducens; 7.775618116 7.910218392 8.148853467 6.848592171 7.968246039 7.530113187 7.572513239 7.695141429 154277022 groEL Stress Heat shock Ajellomyces capsulatus NAm1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 8.533686681 8.268080712 8.194756928 7.958927247 8.115899938 8.052015594 8.454438351 7.90310982 8.328321047 7.952479424 8.127690213 62120301 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 8.358580904 7.765088199 8.127596956 7.91414325 7.776195325 7.722774815 7.509953629 7.793707502 7.626444792 7.774416447 7.642181717 4996796 gyrB other category gyrB bacterium rM4 superkingdom:Bacteria; 9.197480094 9.03005242 9.052641661 8.715101371 8.773541547 8.526969542 8.557645978 8.806917784 8.512603504 8.905266518 8.71690639 8.83025599 111022199 CODH Carbon cycling Carbon fixation Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.665243139 8.831291814 8.671696436 8.46397657 8.648775703 8.674945517 9.094905759 8.847337818 8.828251618 8.945564588 9.158411 8.979180311 2897667 nifH Nitrogen Nitrogen fixation Paenibacillus macerans superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 8.906036456 8.892901972 8.737429578 8.455934103 8.27480835 8.112472789 8.028728626 8.336903737 8.830850038 8.201434148 8.01665177 8.268958608 212529448 pheA Organic Remediation Aromatics Other aromatics Penicillium marneffei ATCC 18224 8.244616906 8.01054652 8.391961186 7.597740027 7.483468123 7.468250906 7.01322793 7.198643198 7.72215288 7.211381145 7.236517367 7.467839915 187719728 nmoA Organic Remediation Aromatics Nitoaromatics Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8.453804987 8.611903935 8.415656216 7.990076384 7.985268308 8.242691859 8.148614582 8.218045676 8.282228838 8.09892363 8.052205277 8.13495411 90018513 Catechol Organic Remediation Aromatics Other aromatics Acinetobacter baumannii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 8.056326139 8.381519048 7.600493559 7.278430549 7.210879019 7.437390207 77172854 gyrB other category gyrB Streptococcus agalactiae COH1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus agalactiae; 8.140300102 8.147231643 8.392447268 8.093616294 7.856905009 7.773703176 7.364844068 7.564935236 7.531518913 7.529660908 7.837640364 160900347 pstB Stress Phosphate limitation Delftia acidovorans SPH-1 8.091586074 8.200745521 8.156487026 7.913539336 7.91133892 8.065535966 8.072520041 7.693048082 8.059191381 7.858506376 7.791173451 7.856448399 170776938 pstA Stress Phosphate limitation Leptothrix cholodnii SP-6 8.09721355 7.958210121 8.027564538 7.976629764 7.640479696 8.02991716 8.378702813 8.392857564 8.132087821 8.1225995 8.01154264 126194738 pcc Carbon cycling Carbon fixation Pseudomonas aeruginosa 2192 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.437679875 8.574681286 8.659027672 8.171743179 8.201018434 8.655722717 8.891020876 8.629835427 8.998149192 8.5587445 8.568369414 8.66065695 91781130 nagG Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 8.02427266 8.162544025 7.41872101 8.122426938 7.972022399 7.93909113 219948272 fnr Stress Oxygen stress Methylobacterium nodulans ORS 2060 8.906710573 8.779738626 9.132225392 8.485918713 8.471995171 8.397568014 8.64569483 8.403211984 8.834962612 8.396138825 8.485890357 8.576339821 152964900 nmoA Organic Remediation Aromatics Nitoaromatics Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 8.879324717 9.003079001 9.040431501 8.409593923 8.72099567 8.505816557 8.654362867 7.805843987 8.964453486 8.273562317 8.367689028 8.19903372 260770365 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 8.648842679 8.241007117 8.009616789 8.095276355 7.997272087 7.75360009 7.946491628 7.936776102 8.417329918 7.868402604 7.835005336 7.715026252 15075 RNA_dependent__RNA_polymerase Bacteria phage REPLICATION Enterobacteria phage fr family:Leviviridae;genus:Levivirus;species:Enterobacteria phage MS2; 8.947739777 8.791116276 9.214113374 8.121301608 7.981185172 7.93112965 7.682268519 7.868591022 8.109294856 7.886142893 8.015498447 8.422433932 149175824 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Planctomyces maris DSM 8797 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces maris; 7.089809024 7.514156244 7.08886328 6.839010773 7.545646378 167759663 sigma_24 Stress Sigma factors Clostridium scindens ATCC 35704 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium scindens; 8.181838492 8.069043764 7.765257982 7.72520887 7.213436111 7.169268341 7.594094063 7.224816331 7.356015195 157679028 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9.150854833 9.193661308 9.26220704 8.72927326 8.650075866 8.608307526 8.448727721 8.411706172 8.575066448 8.389181067 8.538930244 8.918202152 148566535 fnr Stress Oxygen stress Roseiflexus sp. RS-1 9.868565248 9.916952141 10.0693159 9.33628047 9.354501543 9.311881011 9.348024239 9.156424773 9.324568128 9.209256316 9.215557637 9.54931825 254818854 CDH Carbon cycling Carbon degradation Cellulose Mycobacterium intracellulare ATCC 13950 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 8.196014074 8.451117705 8.142426311 7.680101504 7.488441362 8.248391661 8.434321542 7.963472363 8.35892092 8.021067966 7.94992935 7.902640376 147829482 phn Organic Remediation Herbicides related compound Clavibacter michiganensis subsp. michiganensis NCPPB 382 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 8.501671431 8.521640813 8.447641078 7.975831848 8.082047871 8.285677705 8.216441306 8.406593445 8.490676376 8.355024052 8.21829686 8.321580471 119669923 mmoX Carbon cycling Methane Methane oxidation Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8.341964646 8.82633432 8.668978477 7.874387898 8.557978616 8.714249185 9.144476079 8.325497615 8.782086056 8.165031503 8.556561482 83311938 ppx Phosphorus Phosphorus utilization Magnetospirillum magneticum AMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 9.536441275 9.257209692 8.993087135 9.604410042 9.508038915 9.178036532 9.713115332 9.623423111 9.170789658 9.543193875 9.432168713 9.416957029 15077499 dsrB Sulphur sulfite reductase Desulfoarculus baarsii superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfarculales;family:Desulfarculaceae;genus:Desulfarculus; 8.647228632 8.738248135 8.651490014 8.657203764 8.881544699 9.241020441 9.391484116 9.409258176 9.217216744 9.514586569 9.500621918 9.724510898 220715153 Catechol Organic Remediation Aromatics Other aromatics Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 10.80476003 10.38048532 10.7067811 10.75693713 10.50089422 10.34540656 10.6369459 10.5953002 10.50771049 10.36138198 10.6319218 10.25089522 186471905 tfdA Organic Remediation Aromatics Chlorinated aromatics Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.49742035 8.391109414 8.301810289 7.353185875 7.462045349 7.73699709 7.799129948 7.39098138 8.478190034 7.600168679 7.427832688 156857767 APS_AprA Sulphur adenylylsulfate reductase uncultured bacterium superkingdom:Bacteria; 9.032618849 8.857257234 9.352996857 8.648052573 8.725423594 8.544818507 8.40329371 8.720690359 8.8425247 8.906533028 8.977363455 8.90289607 186464347 CopA Metal Resistance Copper Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 9.073852849 8.889271202 9.162235585 8.362756952 8.511709866 8.411444846 8.366651253 8.59712715 8.576664104 8.965391285 9.091353736 9.186317005 224536342 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Bacteroides cellulosilyticus DSM 14838 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 8.364448332 8.351881522 8.032405921 7.901257963 7.871334881 7.60099389 7.935215073 7.036308357 7.803130389 7.683481361 8.062388156 120553093 sigma_32 Stress Sigma factors Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 9.074983478 8.338714467 8.540475021 8.541554903 8.173665556 8.509127636 9.278261438 8.415209575 169760313 atzA Organic Remediation Herbicides related compound Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 9.209642342 9.488757531 9.270545053 8.835510404 8.686223054 8.759406326 8.867666537 8.808322609 8.846609174 8.815744571 8.687056513 9.085600057 146405992 exaA Organic Remediation Chlorinated solvents Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 10.39746717 10.42194675 10.33841819 9.534412945 9.427328347 9.402152422 9.693317817 9.435941126 9.50511563 9.748188143 9.76572016 9.717907193 261415258 sigma_32 Stress Sigma factors Fibrobacter succinogenes subsp. succinogenes S85 superkingdom:Bacteria;phylum:Fibrobacteres;class:Fibrobacteres;order:Fibrobacterales;family:Fibrobacteraceae;genus:Fibrobacter;species:Fibrobacter succinogenes; 8.407654191 8.185357149 8.144775407 8.429346287 7.858087246 8.010797197 7.791888391 7.811828936 149203209 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.251282953 8.446661408 8.103089 8.263843822 8.395621982 8.424436353 8.456740533 8.569025615 8.394407945 8.227094596 8.227260967 37727205 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 9.042360766 9.035527474 9.309898511 8.387397173 8.589482659 8.452867932 8.855200817 8.73778178 8.702247042 8.849597278 9.049642742 8.784290986 28900975 pimF Organic Remediation Aromatics Aromatic carboxylic acid Vibrio parahaemolyticus RIMD 2210633 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 8.945144098 8.981292707 9.329000159 8.482204018 8.00934293 8.274570742 8.272900625 7.994472727 8.470990761 8.156668786 8.494124563 89045485 mer Metal Resistance Mercury Oceanicola granulosus HTCC2516 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 8.595125797 8.274332404 8.33621538 7.528430132 7.789651869 7.895659971 8.010905761 7.80728573 7.930527102 7.858283462 8.026157873 190685374 pilin virulence pilin Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 9.305519313 9.021630224 9.043482203 8.88336833 8.302118105 8.366316996 8.057803312 7.995590668 8.124927289 8.453370006 8.318020369 8.731063952 54024043 scnABC Organic Remediation Others Nocardia farcinica IFM 10152 9.078930643 9.108481255 9.338740606 9.182449929 8.911573235 8.76691197 9.086152869 9.540585933 9.317676652 9.358184392 9.34048644 9.523008027 194566460 pulA Carbon cycling Carbon degradation Starch Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 8.290431843 8.108348182 8.33859275 7.969028511 7.924816074 8.34505444 8.240524739 7.992647108 8.029751412 7.658516114 220718018 nhh Organic Remediation Aromatics Nitoaromatics Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 8.549398193 8.696063753 8.571665624 7.96198633 7.999763415 8.08954787 8.163214512 7.987623707 8.452598028 8.029027593 8.147696317 8.168226709 28808852 pcc Carbon cycling Carbon fixation Vibrio parahaemolyticus RIMD 2210633 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 8.798323905 9.157798592 9.060932838 9.008575251 9.400508243 9.130783594 9.192520564 9.78974194 9.247601889 9.580754132 9.376458378 9.558717942 260579699 sigma_24 Stress Sigma factors Corynebacterium jeikeium ATCC 43734 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 9.06716507 8.826899595 9.060391484 8.698675215 8.62523123 8.613887817 8.497391909 8.674753132 8.529919845 8.889091451 9.029496961 8.542013502 168700747 sigma_24 Stress Sigma factors Gemmata obscuriglobus UQM 2246 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata;species:Gemmata obscuriglobus; 8.466510485 8.924392283 8.662479274 8.027041167 8.202921009 8.115907221 8.079838616 8.117436925 8.075538001 8.250685415 8.302212081 197124506 phoB Stress Phosphate limitation Anaeromyxobacter sp. K superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 8.580403538 8.873266905 8.30249559 8.24773355 8.493729796 8.519869237 8.482568425 8.379860456 8.690355284 8.303750822 8.825379733 8.133837726 49176897 tfdA Organic Remediation Aromatics Chlorinated aromatics Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.100824002 8.141798031 7.523368578 7.450559785 7.542798739 7.191694446 7.646174834 7.707399782 7.734742845 7.503201388 7.837374806 110588902 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.683307541 8.414694814 8.455115387 8.125146824 8.194951454 8.289631586 8.722901267 8.493713268 8.565116195 8.593795053 8.269670584 8.406486236 281405933 sigma_70 Stress Sigma factors Prevotella copri DSM 18205 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella copri; 8.169763924 8.499275345 8.27162496 7.47101608 7.513908501 7.657111558 7.312286008 7.522268153 7.756988597 8.201375321 7.93931722 7.878289682 83593229 CopA Metal Resistance Copper Rhodospirillum rubrum ATCC 11170 9.514907409 9.542523943 9.660581884 9.512771122 9.733860176 9.544352361 9.563592879 10.14073977 9.329878004 10.0167569 9.745210195 9.67903436 269791353 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Thermobaculum terrenum ATCC BAA-798 superkingdom:Bacteria;genus:Thermobaculum;species:Thermobaculum terrenum; 9.033109138 9.331080321 8.858966303 8.473387328 8.332824874 8.791983872 8.978820628 8.748128224 8.98516138 8.764879363 8.896978079 8.765638762 157086264 merP Metal Resistance Mercury Citrobacter koseri ATCC BAA-895 8.458098608 8.474975541 8.274289434 7.677165352 7.765938519 7.934555475 7.975296817 7.965421486 8.059720292 7.835331038 8.227511081 91777327 nmoA Organic Remediation Aromatics Nitoaromatics Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.37404217 8.36816098 8.083749993 8.471062998 8.374233496 8.294526942 8.232440193 8.596914102 8.617033725 8.557129353 8.333828009 8.514397901 126720294 grpE Stress Heat shock Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.945931218 8.754948137 8.986324159 8.270252809 8.340202734 8.097817389 7.95701161 7.964844158 8.536575132 7.991426385 7.985240011 8.354905287 182633150 CopA Metal Resistance Copper Beijerinckia indica subsp. indica ATCC 9039 7.861568212 7.934520838 7.401903781 7.127138213 7.100828233 6.715939395 7.631947661 6.907444288 7.015048049 78217950 ZntA Metal Resistance Zinc Desulfovibrio desulfuricans G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 8.59485554 8.715183943 8.424207264 7.815177379 8.320106517 8.442091485 7.980333237 8.467805784 8.264844284 8.546705649 8.620360719 8.443256485 9622537 bbsG Organic Remediation Aromatics BTEX and related aromatics Thauera aromatica superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 8.890747541 9.117852189 8.795834771 8.470545029 8.965511359 9.26787844 9.480169833 9.394162325 9.421538193 9.584759699 9.557523163 9.632127118 46371029 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.723820545 9.432909204 9.504044489 8.836077951 9.226420779 9.164138345 9.386092256 9.163516418 9.40453476 9.693531129 9.213547775 9.173736487 32527393 catB Organic Remediation Aromatics BTEX and related aromatics Ralstonia eutropha superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.272017999 8.389145344 8.35187997 8.180259885 8.172716851 8.065092415 7.961791407 8.261832801 8.604413391 8.43276616 8.560965343 8.265187688 219861465 pcaG Organic Remediation Aromatics Other aromatics Arthrobacter chlorophenolicus A6 8.927385817 9.209476328 9.151667304 8.487188356 8.998676742 9.391788406 9.78427775 9.107152241 9.63340229 9.238940367 9.043688434 9.39990885 89512298 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.405528835 8.449911522 7.632311521 8.147200574 8.30788064 7.587130641 8.032511461 7.925385479 7.918595626 7.823932477 115374416 AceB Carbon cycling Carbon degradation others Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 9.964637131 9.897452837 9.573980754 9.665557712 9.752021632 9.857246414 9.478487636 9.776809202 9.702446168 9.792275309 159897826 fnr Stress Oxygen stress Herpetosiphon aurantiacus ATCC 23779 9.399552072 9.406375469 9.087647181 8.984774372 9.015542012 9.448580052 9.781901577 9.445738277 8.788599558 9.183484882 9.336212305 9.07298042 71907885 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 8.422640861 8.236105816 8.19984587 7.652019402 7.523958921 8.053229185 8.09835286 7.492338921 8.146573706 7.694811502 7.759032824 7.931661827 157850317 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 8.913203668 8.653566945 8.754303195 9.012457783 9.041583287 9.240506907 8.979141584 9.587085338 8.764503689 9.357102667 9.519056647 8.667501648 126719237 glnA Stress Nitrogen limitation Roseobacter sp. SK209-2-6 9.263781229 9.279032338 9.113648231 8.436277049 8.308438303 8.667781344 8.806930965 8.374646999 8.68577173 8.71071242 8.87908778 8.790542846 84369762 xylanase Carbon cycling Carbon degradation Hemicellulose Xanthomonas oryzae pv. oryzae MAFF 311018 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 8.624063399 8.958052092 8.768833578 8.834407296 9.159660045 9.296843206 8.901331234 9.227146742 8.895222709 8.87043686 9.187565514 8.901901567 110282865 pstC Stress Phosphate limitation Cytophaga hutchinsonii ATCC 33406 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Cytophaga;species:Cytophaga hutchinsonii; 6.996169716 7.034291102 87310939 ChnA Organic Remediation Other Hydrocarbons Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 8.370034558 8.84515737 7.969388348 7.902127329 8.490705221 8.655373272 8.210272279 8.512333535 8.211499939 8.509058071 8.189341548 88800613 mer Metal Resistance Mercury Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 9.256211859 8.997025693 9.363084709 8.920780685 9.086175566 8.732163076 8.857557876 9.018852997 9.025244693 9.19082193 9.331058323 9.464955645 163740790 pimF Organic Remediation Aromatics Aromatic carboxylic acid Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 9.705429075 9.326930923 8.462885613 9.878463585 9.474798221 9.536812467 9.835092094 9.664097962 9.021642114 9.477284408 9.261713335 187921783 MFS_antibiotic Antibiotic resistance transporter Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 10.08123889 9.92752705 9.929534538 9.054325474 9.132587488 8.973928581 9.146213663 8.99184247 9.445781878 9.100179625 9.29372366 9.398862123 220906192 fnr Stress Oxygen stress Cyanothece sp. PCC 7425 8.189208994 8.059179916 7.337575338 7.230738217 89343434 merB Metal Resistance Mercury Mycobacterium flavescens PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.018257064 8.059510987 7.705209758 7.951628377 7.825003834 8.00073163 7.665060709 8.120292269 7.706779206 7.834172995 7.967437016 189197479 katE Stress Oxygen stress Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 8.763128554 8.566739696 8.457190616 8.123548891 8.244160083 7.928556703 8.644951204 8.443069549 8.11194073 8.104393424 8.176713998 219847328 pcc Carbon cycling Carbon fixation Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 8.350265282 8.253991798 8.510657764 7.804089329 7.886985718 7.779184134 7.889882243 8.037882217 260428808 fnr Stress Oxygen stress Citreicella sp. SE45 8.307373936 8.096017933 8.161844584 7.801762563 7.703996096 7.991182152 8.022293694 7.439792414 8.504048081 7.721930827 7.411971866 7.488606645 221723811 nhh Organic Remediation Aromatics Nitoaromatics Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.363683204 8.216048163 8.015579519 8.062959629 8.506846326 8.48857859 8.368784107 8.73100097 84683825 PobA Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2654 8.46695474 8.552446996 8.762198674 8.933421664 8.507493161 8.30561271 8.299205887 8.370292482 8.453976873 8.751695146 7.99794414 108464850 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 8.285237996 7.969758943 8.385328807 7.922435421 8.094767284 7.811242459 7.596627191 7.640651091 7.584594246 260771431 pstS Stress Phosphate limitation Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 8.075598378 8.142666278 7.767666436 7.486218429 7.678991929 7.487112456 7.564698912 7.37322625 7.677122341 7.322344237 197731402 amyA Carbon cycling Carbon degradation Starch Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 9.335680567 9.207233753 9.097895338 8.762730209 8.606709141 8.638878946 8.691334609 8.387900945 8.78923109 8.661748242 8.362226755 8.640458452 114330063 mer Metal Resistance Mercury Nitrosomonas eutropha C71 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas eutropha; 11.06063308 11.07796668 11.0695503 10.67169294 10.37280546 10.28496336 10.4376934 10.15344785 10.30993081 10.18118081 10.18291694 10.41840415 114548970 mer Metal Resistance Mercury alpha proteobacterium HTCC2255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 9.252346904 9.35687994 9.188108174 8.54637088 8.673763682 8.474343707 8.701484939 8.749103776 8.616450638 8.735177838 8.449426518 8.698987589 60326766 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.141956117 8.213285403 8.405565895 7.574433979 7.416788781 7.603897112 7.307913543 6.919487575 7.676939726 7.125603382 7.090755381 7.429386945 256669207 phoB Stress Phosphate limitation Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 9.054959736 9.222775488 9.186128239 8.95248865 9.021720867 8.757721096 9.057741121 9.375467279 9.179744278 9.578522322 9.253665257 9.360830112 32307925 narG Nitrogen Denitrification uncultured bacterium 9.140350679 8.667796608 8.625895548 8.564846274 8.771466881 8.459424799 8.395156453 8.815292133 8.856456434 8.659161022 8.664742152 8.565963888 40019131 nagG Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida 8.862227282 8.345339715 8.251244959 8.265544916 8.309441776 8.249544734 7.833899058 8.275696913 8.304682555 8.240839485 8.353603597 8.663603292 150839541 gyrB other category gyrB Actinobacillus succinogenes 130Z 7.976961616 7.864774212 8.432169532 7.884039752 7.802376879 7.924062491 7.553662746 8.080654155 8.066492281 7.989925633 7.880317074 8.121851692 114544403 chnB Organic Remediation Other Hydrocarbons Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.273832437 8.333945849 8.198417209 7.584559029 7.734364113 7.849833217 7.65747993 7.345769973 8.019224249 7.425648878 7.255780516 7.911669392 221157510 linB Organic Remediation Pesticides related compound Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 8.928427801 8.734571656 8.725665354 8.869329092 8.69762599 8.470788003 8.910593539 8.808639751 8.850216533 8.738578044 8.867638349 8.543597161 83853472 pcc Carbon cycling Carbon fixation Oceanicaulis alexandrii HTCC2633 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis;species:Oceanicaulis alexandrii; 9.960948306 9.591418586 9.810595027 9.319150491 9.19083914 9.07861044 9.42761281 9.126313899 9.137006792 9.395528747 9.274563053 9.411738633 254970969 MFS_antibiotic Antibiotic resistance transporter Acidithiobacillus caldus ATCC 51756 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 8.559363747 8.576395825 8.86549782 8.135676302 8.284243575 8.160175133 8.212490691 8.213266014 8.461730383 8.350262676 8.487890519 8.341699403 83859634 pimF Organic Remediation Aromatics Aromatic carboxylic acid Oceanicaulis alexandrii HTCC2633 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis;species:Oceanicaulis alexandrii; 9.120397271 9.068670192 8.961543961 9.138231188 8.962872447 8.590629929 8.848848279 8.627879989 8.851891577 8.954637146 9.134333939 8.539302888 119536291 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.169350304 8.05258895 8.422585413 7.736155424 7.618466633 7.360501929 7.765717488 7.728559235 7.634990876 7.889942663 7.605961047 111147421 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 9.172731318 9.101096373 9.243453727 8.489477964 8.398861763 8.409321846 8.325880593 8.280989349 8.514642936 8.050312306 8.424505145 8.56714284 56678009 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 8.025448198 8.200077746 8.135611124 8.052728289 8.044990984 8.135403163 8.188962689 8.423873571 8.222164044 8.541672549 8.419782071 8.219697406 145238722 exoglucanase Carbon cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8.938954158 8.591087125 8.360552713 8.348798951 8.137494762 8.271276703 8.503940843 8.401952076 8.503292101 8.196013709 8.295490581 8.216624088 80563498 narG Nitrogen Denitrification uncultured bacterium 9.564499186 9.289243271 9.38474252 9.65855476 9.420137461 8.939160069 9.49499202 9.140753633 9.510093328 8.842264689 8.777092471 9.35989644 255325922 pstC Stress Phosphate limitation Corynebacterium tuberculostearicum SK141 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium tuberculostearicum; 8.130887057 8.157420741 8.141618111 8.465989855 8.328043068 8.285726647 8.686228315 8.386699903 8.237371161 8.124570421 121551813 proO Organic Remediation Aromatics Other aromatics Verminephrobacter eiseniae EF01-2 9.246146221 9.089425979 9.104006124 8.818007247 9.03904232 9.135667915 8.955808257 9.097776017 8.832567394 8.995868073 9.275664318 9.033861715 158113061 pcc Carbon cycling Carbon fixation Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.117777074 8.255226166 8.734161421 8.604319756 8.533798815 8.131386519 8.686026616 8.566924313 8.365320167 8.394488659 8.329754513 169758213 silC Metal Resistance Silver Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.563495689 8.374610199 8.610268007 8.426970849 8.320592491 8.19307782 7.457536469 7.629927624 7.911325563 8.044021984 8.060292042 196257859 gyrB other category gyrB Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.812725937 7.864103278 7.697190963 7.680631314 7.415966227 7.657838437 7.198858918 7.350820781 7.165390261 78166132 BchY other category chlorophyllide reductase Chlorobium luteolum DSM 273 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon luteolum; 9.80550351 9.700194677 9.685541487 8.636670154 8.952763258 8.789653597 8.594280835 9.559730697 8.969927086 9.173888161 8.939919232 89337434 ZntA Metal Resistance Zinc Mycobacterium flavescens PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 9.039625176 9.318855936 8.972287924 8.808137985 8.087789479 8.529224168 8.905279275 8.56273939 8.695676596 8.759487348 8.907428975 8.785264103 211582772 cellobiase Carbon cycling Carbon degradation Cellulose Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 7.255777854 7.000389116 110820383 bphF1 Organic Remediation Aromatics Polycyclic aromatics Rhodococcus sp. RHA1 9.124324427 9.010982164 9.08273886 9.108792439 8.960078678 8.666776096 8.893380651 9.19773698 9.060571298 8.99480595 8.973771179 8.855881577 212008941 CopA Metal Resistance Copper Thermococcus onnurineus NA1 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus onnurineus; 6.872381408 7.126388483 83953218 nasA Nitrogen Assimilatory N reduction Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 8.563495689 8.76364102 8.943561754 7.737391414 7.707251602 7.715791249 7.504637759 8.231322389 7.78465795 7.88673327 7.94609484 126316318 sdsA Organic Remediation Others Pseudomonas putida GB-1 8.836708776 8.578561855 8.876230264 8.416310976 8.644235846 8.284704226 8.169528604 8.600630845 8.686571958 8.384968336 239910430 ABC_antibiotic_transporter Antibiotic resistance transporter Thermococcus gammatolerans EJ3 9.392479752 9.151820371 9.247062479 8.336571771 8.165616143 8.169720722 7.875738738 8.537849964 7.994093563 7.883622572 8.279040453 83317102 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.579288469 9.665332255 9.360322899 8.981141726 9.15319656 8.840146165 8.767761661 8.637979594 8.887132944 8.904162509 9.05617173 114341711 narH Stress Oxygen limitation Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 8.865688086 8.538641681 8.357111999 8.978659389 8.971406206 8.881372823 8.539071093 9.079454804 8.859979853 8.87146568 8.915787046 8.875752929 117999746 tfdA Organic Remediation Aromatics Chlorinated aromatics Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.785027288 8.826949166 8.837807547 8.999217147 8.855690221 9.041581859 9.352277889 9.457417948 8.949899687 9.343886073 9.327586078 9.369514132 134278823 tfdA Organic Remediation Aromatics Chlorinated aromatics Burkholderia pseudomallei 305 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 9.727444943 9.295685023 9.459809654 9.906519124 9.627914456 9.200647591 9.876455931 9.736757328 9.573529922 9.756909494 9.533701135 9.566275216 167034533 cytochrome Energy process Energy process Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 9.660524549 9.49337301 8.643584792 8.688794463 8.588587963 8.274839873 9.24773871 8.473003896 8.553209858 8.798174834 119775049 ArsC Metal Resistance Arsenic Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 8.437953388 7.738315617 8.199691034 8.222234376 7.961875279 7.97985731 7.653718469 7.907550406 8.077095165 7.576426135 7.648042734 209958848 BchY other category chlorophyllide reductase Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 10.19997927 10.03258845 10.00638889 9.534767488 9.376441002 9.298633327 9.740495533 9.111156081 9.694368543 9.381196584 9.521122637 9.551506598 83026018 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 8.347490475 8.251628625 8.063420516 7.923470134 7.820544145 7.786113262 8.382888064 8.241216308 8.167016498 8.292353206 8.295637594 193160952 amoA Nitrogen Nitrification superkingdom:Bacteria; 9.404856994 8.515967628 8.701336027 9.171436166 9.228406601 8.79865185 9.132951999 9.170474167 8.455285485 8.625989587 8.554162484 8.731306474 68345139 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.734145066 8.889355023 8.787565831 8.276700635 8.027872526 8.060917153 8.246173665 7.786558006 8.248602504 8.123533779 8.221274944 7.967510997 110826490 APS_AprA Sulphur adenylylsulfate reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.320262587 8.207979054 8.257018613 8.262712556 8.387092858 8.125010919 7.884981886 8.270729427 8.151678532 8.081024529 8.009830076 8.321960037 56809489 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.091670625 7.845888581 7.262766115 7.108421044 7.069635682 6.709779331 6.725707291 7.433245287 7.069576897 6.913212947 7.216427032 146402080 formate_hydrogenlyase_complex Bioleaching Carbon fixation Acidiphilium cryptum JF-5 8.073650234 7.998551175 7.017191956 7.407360235 7.664672311 7.151090064 7.257958789 27381147 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 10.72170411 10.57038457 10.93433363 10.86301181 10.76564645 10.48518811 10.71059498 10.09430282 10.59931981 10.58986128 10.08451226 91784525 ppx Phosphorus Phosphorus utilization Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 9.298817128 8.598913156 8.624988681 8.868576906 8.524387283 8.224614775 8.581725694 8.701761351 8.73182456 8.585040149 8.625505877 8.339222688 117992010 phtA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8.70009674 8.430522996 9.106978971 8.695153157 8.365948183 8.163930527 8.281247768 8.553416137 8.418626692 8.519440636 8.58829915 34494872 ureC Nitrogen Ammonification Haloarcula vallismortis superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula; 8.768178536 8.550344521 8.50218561 8.123886652 7.946596887 7.943984726 7.745635714 7.900718348 7.953139526 7.554066307 7.987044316 2105093 narG Nitrogen Denitrification Thermus thermophilus superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus; 8.458860544 8.751458271 8.5899802 8.028492313 7.894216419 7.926379664 7.467631966 7.776086632 7.844863491 7.960713062 7.94056178 8.026617025 134098972 proV Stress Osmotic stress Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 9.021661358 9.065699717 8.798291568 8.661622466 8.49628653 8.509581288 8.882736961 8.570406438 8.63246499 8.708554019 8.732199435 8.953875533 229473029 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 8.064342951 8.166019827 7.684936155 7.7187029 7.821488845 7.380532274 7.606991428 7.965347166 7.717211614 7.54783506 7.692707282 165880023 exoglucanase Carbon cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 9.037811339 9.403811874 8.68233508 8.606722549 8.293111036 8.51039262 8.835077857 148734518 tape_measure_protein Bacteria phage STRUCTURAL Enterobacteria phage TLS order:Caudovirales;family:Siphoviridae;genus:T1-like viruses; 8.714595909 8.131050149 8.832717962 7.842231658 7.787135288 7.825814473 7.74757167 7.309410988 7.672508353 7.619273643 7.79027917 218758105 SMR_antibiotics Antibiotic resistance transporter Desulfovibrio vulgaris str. 'Miyazaki F' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 8.417725438 8.312396002 8.506889197 7.665481738 7.766763531 7.817937799 8.2535829 7.918700501 7.764169505 7.65470922 7.832264703 147850472 SMR_antibiotics Antibiotic resistance transporter Synechococcus sp. RCC307 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.056817738 7.671386387 8.256814963 7.425036842 8.19199637 7.898154578 7.944722841 8.20847305 7.38027487 118653577 tftH Organic Remediation Aromatics Chlorinated aromatics Burkholderia cenocepacia MC0-3 8.501911983 8.503863269 8.59197631 7.983378999 7.88488075 8.146285193 8.310603483 7.999278295 8.319063497 7.859286515 7.705643999 8.054948111 33320447 dsrA Sulphur sulfite reductase Desulfacinum infernum superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Desulfacinum; 8.866646047 8.8648456 8.749724119 8.617286372 9.081888948 8.914316374 8.471709872 9.122436478 8.596241918 8.907211374 8.894455786 9.13883338 119962703 nmoA Organic Remediation Aromatics Nitoaromatics Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 9.088505793 8.94710997 9.07781577 8.599059291 8.515015292 8.545872478 8.480159124 8.319636298 8.468609697 8.406464195 8.661804993 8.778820978 88788680 amyA Carbon cycling Carbon degradation Starch Synechococcus sp. WH 7805 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.258194762 8.354588046 8.051940742 7.992078283 8.288883784 7.864911165 7.966090173 8.239820374 7.724889849 163795093 CopA Metal Resistance Copper alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 8.863953593 8.281439465 8.886353971 8.716304191 8.331328614 8.948253798 8.694991263 8.334950873 8.483302618 8.679265862 161898386 phytase Phosphorus Phosphorus utilization Buttiauxella sp. GC21 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Buttiauxella; 9.54793711 9.528668028 9.45315057 10.08855577 10.01694354 9.921921666 9.7354028 9.555824493 9.970117064 9.870294639 9.052362538 119483160 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 9.441610213 8.698129537 9.112161411 9.320761372 9.534478148 9.293837978 9.100976829 9.74601936 9.121206295 9.5664054 9.443520584 222056633 phoB Stress Phosphate limitation Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 7.926759193 8.028324471 7.681565192 7.367123738 7.617290931 7.60716929 7.791584507 7.989324612 7.82188889 7.544650379 7.569011302 91225162 AceB Carbon cycling Carbon degradation others Vibrio alginolyticus 12G01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 7.424831104 7.158292462 7.117326438 7.610085996 7.269621207 7.373612542 7.239975996 229587660 cytochrome Energy process Energy process Pseudomonas fluorescens SBW25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.749483754 8.893723014 8.726716235 8.044393316 8.435061146 8.121777502 8.481868882 8.938151837 8.419646942 8.616873458 8.350728377 8.577503478 198275984 fnr Stress Oxygen stress Bacteroides plebeius DSM 17135 7.912960821 7.851003821 7.785293074 7.417964821 8.082928663 7.758001679 8.153713562 8.04323231 7.873637133 89512372 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.387327993 8.307743183 8.065385351 8.303059182 8.367918792 8.389484648 8.416396101 8.528000114 8.384905626 8.285137303 8.426775306 8.281803364 26989874 iro virulence Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.446506042 8.889327076 8.870603302 8.219964523 8.057203626 8.387477708 8.679739334 8.213867175 8.499862462 8.239761391 8.325452815 8.420918849 227549966 pcc Carbon cycling Carbon fixation Corynebacterium lipophiloflavum DSM 44291 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium lipophiloflavum; 8.511089437 8.799144956 8.596730236 7.973041306 8.12884351 8.440257357 8.959940691 8.327227886 9.129356467 8.256529472 8.085133554 8.4656599 261346682 AceA Carbon cycling Carbon degradation others Providencia rustigianii DSM 4541 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 8.72632251 8.272530474 9.008018732 7.803928911 7.997866085 8.293524644 7.909324049 7.114633805 7.682259635 7.758971078 8.107736813 269138915 MATE_antibiotic Antibiotic resistance transporter Edwardsiella tarda EIB202 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella tarda; 8.61810698 8.852997147 8.767138834 8.277207352 8.100392441 8.131205945 8.545923181 8.265228668 8.821621656 8.123562049 8.506074288 8.08812933 3157532 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 8.866278571 8.645136641 8.636608197 7.98843249 7.809698898 7.77257619 7.740704766 7.622722806 8.036206868 7.707743271 7.756198073 7.946465885 219537596 dmsA Organic Remediation Others Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 8.176169247 8.170037607 7.414448308 7.288037185 7.181414107 7.167837592 7.121144015 7.226315587 25028566 pulA Carbon cycling Carbon degradation Starch Corynebacterium efficiens YS-314 8.93704141 8.954120508 8.970352336 8.249220714 8.107280398 8.157594826 7.871973939 7.764227299 8.291401146 7.881629268 7.906113703 8.34043411 198256910 ara Carbon cycling Carbon degradation Hemicellulose Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 8.824305282 8.46045753 8.427009849 8.059322298 8.358223437 8.683581759 8.66862528 8.685000485 8.681702537 8.310941695 8.37131318 8.337868244 161379854 pimF Organic Remediation Aromatics Aromatic carboxylic acid Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 8.154913656 8.167037262 7.520717016 7.302144323 7.263333865 7.18121417 6.804060787 7.296671416 146313505 CopA Metal Resistance Copper Enterobacter sp. 638 8.69347276 9.007557814 8.598534218 8.893901757 9.203097285 8.705783811 8.313513804 8.587052315 9.402491278 8.570945799 9.608043795 158314787 tfdA Organic Remediation Aromatics Chlorinated aromatics Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.349350567 8.109892124 8.223527018 8.409168555 8.617782681 8.451955555 8.010600059 8.525267043 8.118692646 8.295561062 8.212543334 8.696786984 227237954 narH Stress Oxygen limitation Mobiluncus curtisii ATCC 43063 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus curtisii; 9.15456214 9.147505621 9.180007512 8.782030909 8.782222692 8.690606997 8.710927837 8.608733946 8.553268989 8.739730802 8.68966681 8.833574309 240103915 pstB Stress Phosphate limitation Thermococcus gammatolerans EJ3 9.06700561 9.09194288 9.237088851 8.246817219 8.256443226 8.925626041 9.260495139 8.400374151 8.955761559 8.678344214 8.991476101 8.848495024 45386161 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 8.515140536 8.505795762 8.494324982 8.646984108 8.314133765 8.111971104 8.24898572 8.768944569 8.625970359 8.489145457 8.507591696 3378678 hydrogenase Energy process Energy process Rhodobacter sphaeroides superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 8.721043241 8.413820234 8.678079998 8.659805558 8.658257027 8.526503923 8.906267117 8.732574647 8.582671094 8.753872394 8.630390243 8.686041381 120404959 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.756500364 8.8177417 8.642607908 8.751174643 8.501964249 8.021426934 8.620309684 8.757811982 8.193655123 8.575534415 8.494281588 8.357103531 162281688 sigma_70 Stress Sigma factors Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 9.022995353 8.607740529 8.38392542 8.956686044 8.821009606 8.652294861 8.538998635 9.132562538 8.649776017 8.660035181 8.799292833 8.618319371 158332310 nhh Organic Remediation Aromatics Nitoaromatics Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 9.015957447 8.977244774 8.954707336 8.348976712 8.246460226 8.303019042 8.156491207 8.159403457 8.348410257 8.169521734 8.211951662 8.6217487 269925463 sigma_24 Stress Sigma factors Thermobaculum terrenum ATCC BAA-798 superkingdom:Bacteria;genus:Thermobaculum;species:Thermobaculum terrenum; 9.039896734 8.952187175 9.221967935 8.825452258 8.636974037 8.552537254 8.216121644 8.761548433 8.832827516 8.256752103 8.295513496 8.649911447 26000705 B_lactamase_A Antibiotic resistance Beta-lactamases Klebsiella pneumoniae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella; 8.410144175 8.348927832 8.559102394 8.431131889 8.342503262 8.389461362 8.820163156 8.6624746 8.683403975 8.59569605 8.725840882 78365334 nrfA Nitrogen Dissimilatory N reduction Shewanella sp. PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 9.554976467 9.667084009 9.716414465 9.233422399 9.217629996 9.473167202 10.03285319 9.265421567 9.988404684 9.306805137 9.365400185 9.280513313 213926251 B_lactamase_C Antibiotic resistance Beta-lactamases Pseudomonas syringae pv. tomato T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 8.626847973 8.941246649 9.254616073 8.847198019 8.645976263 7.941791767 8.601288456 9.03607398 8.696897831 8.80208261 8.786390973 8.948816516 2266938 mnp Carbon cycling Carbon degradation Lignin Trametes versicolor 8.398885577 8.692151976 8.062620808 8.374529543 8.578630012 8.328985581 8.511294179 8.338880556 8.742854535 8.30604612 8.350452362 8.219164235 257444843 sigma_70 Stress Sigma factors Treponema vincentii ATCC 35580 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema vincentii; 9.175972523 8.647150023 8.729828929 9.119771839 8.884403607 8.507832284 8.895561678 8.753496024 8.883931334 8.92365337 8.958085288 8.654262978 184192107 pstC Stress Phosphate limitation Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.842040599 9.112382507 9.07251804 8.891039744 8.915607037 8.658164079 8.941907642 9.143851981 8.995475679 9.290855069 9.086682048 9.14483549 194347965 pilin virulence pilin Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 9.076099271 9.2710969 9.108277105 8.669271923 8.612241 8.758658974 9.154033365 8.261903618 9.141821195 8.671581624 8.577006901 8.670955466 68164567 proO Organic Remediation Aromatics Other aromatics uncultured bacterium BAC17H8 superkingdom:Bacteria; 9.596505905 9.819204073 9.415857293 9.134068279 9.436056363 9.512727162 9.406373823 10.00992276 9.210383288 9.706047825 10.02744073 9.881811163 160366203 pilin virulence pilin Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.472039431 8.783473104 8.652265069 8.756027207 8.607480579 8.336852105 8.792548028 8.640670136 8.552432562 8.626585598 8.7218978 15842811 sigma_24 Stress Sigma factors Mycobacterium tuberculosis CDC1551 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 8.181131577 7.996873229 8.242291771 7.673358857 7.715977784 7.625478723 7.932725681 7.885277307 7.717357412 8.11726933 7.865715437 56911908 srt virulence surface protein Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 8.44472497 8.215325159 8.416628036 8.313863322 8.086556733 8.308466082 8.307304108 8.071266381 8.383526436 8.553980182 8.179568412 115442792 phoA Stress Phosphate limitation Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 8.243361399 8.828242061 9.054716096 8.036421885 8.100148408 7.912923711 7.937163923 7.79621266 8.050739307 8.09933266 8.128149351 7.88428551 198270388 pcc Carbon cycling Carbon fixation Bacteroides plebeius DSM 17135 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides plebeius; 9.70481048 9.722670272 9.745952437 8.76138928 9.303108733 8.971871513 9.232689317 8.990642165 9.408355476 9.089205407 9.19856434 9.173799576 55740969 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.276316891 8.085679597 7.501457693 7.557675494 7.498403616 7.407070678 7.327598934 7.751234759 7.331046972 7.431952322 7.53219954 110635018 ureC Nitrogen Ammonification Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 8.373768801 8.449362146 8.267418985 7.857904563 8.167443903 8.212738615 8.268250299 7.837553579 7.961751903 7.834267863 8.248559675 7.863877249 89052698 hrcA Stress Heat shock Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 8.836812043 8.582436904 8.900396925 8.403142558 8.355094549 8.201950052 8.156514516 9.000247423 148518934 linB Organic Remediation Pesticides related compound Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 7.947824678 7.790044879 7.911508398 8.118806797 7.938493148 8.079662324 7.81348871 7.79389014 7.825445475 7.858098511 7.374272747 227953017 sigma_24 Stress Sigma factors Meiothermus silvanus DSM 9946 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 8.992501637 8.881359759 8.89182962 8.677884208 8.572773331 8.435378336 8.821748839 8.907238398 8.785743621 8.774575344 8.475467222 8.783113079 34102341 atzA Organic Remediation Herbicides related compound Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 8.867430683 8.793809921 8.3756915 8.890601765 8.892608455 8.882774307 9.125632645 9.175409857 8.928500407 9.120318115 9.110008553 9.085541015 33243249 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.166506527 8.255155939 8.590869552 8.164871139 8.329701493 8.094331809 7.875310023 8.558143616 8.257874914 8.299713205 8.234151314 8.452546177 149818385 tutFDG Organic Remediation Aromatics BTEX and related aromatics Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 10.60732613 10.58099358 10.66658575 9.953299622 10.03237446 9.949560334 10.57578086 10.23399559 10.61109587 9.895671809 10.05164036 9.955966702 214045195 pcaG Organic Remediation Aromatics Other aromatics Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.212796239 7.103078424 7.544182326 7.172162269 7.423027371 7.787762539 7.526275717 7.502422038 7.375328394 74057662 Arylest Organic Remediation Aromatics Other aromatics Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 9.392512657 9.427893866 9.224951941 9.409343029 9.423269196 9.157540222 9.40980261 9.645039033 9.513347702 9.610940107 9.44102712 9.480231135 269130580 ppk Phosphorus Phosphorus utilization Slackia exigua ATCC 700122 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Slackia;species:Slackia exigua; 9.954554202 9.929535204 9.424791022 9.327500042 9.006621167 9.323374673 10.0786936 9.502776324 9.349656359 8.911379025 9.077918148 9.1055861 113954561 sigma_70 Stress Sigma factors Synechococcus sp. CC9311 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.871726852 8.8776726 9.440491157 8.489615304 8.627578564 8.165538485 8.767822112 8.923728469 19421892 fnr Stress Oxygen stress Desulfitobacterium hafniense 8.554515085 8.715651276 9.146401802 8.073847978 7.8104203 7.841002039 7.557140761 7.372544383 8.088728398 7.566189189 7.556311252 8.066242702 212562070 ahpF Stress Oxygen stress Anoxybacillus flavithermus WK1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Anoxybacillus;species:Anoxybacillus flavithermus; 8.202610948 8.445282889 8.529934143 8.035021468 7.887869636 8.19282902 8.231969452 8.844480385 8.352981366 8.684392305 8.546770906 8.407710088 225849854 fnr Stress Oxygen stress Persephonella marina EX-H1 8.713240424 8.806573627 9.069625979 8.247234797 7.786999522 8.229524597 7.748530455 7.411622602 8.248507953 7.852789934 7.789898624 8.118578598 28872010 ureC Nitrogen Ammonification Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 8.798437148 8.918348593 8.515577924 8.511057277 8.392881521 8.911746991 8.527824802 8.523288763 8.423770302 8.441419482 8.318085019 148261424 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 8.35820145 8.677910439 8.693164399 8.132157662 8.055379901 7.849826417 8.024776288 8.222451667 7.858927283 8.103334393 8.187569259 8.396309996 87331970 arhA Organic Remediation Aromatics Heterocyclic aromatics uncultured bacterium 8.58482604 8.518028813 8.695061681 8.18233495 8.289725417 8.19985374 8.311484676 8.662330028 8.296157584 8.20927994 8.264906427 8.391955108 18413621 narG Nitrogen Denitrification Halomonas halodenitrificans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 7.995021835 8.313182257 8.35944502 7.995800216 8.127958225 7.965387054 8.364891656 7.933517149 219858294 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 9.165515606 9.124128399 9.163639028 8.751502219 8.557510005 8.539077861 8.782761233 8.460634402 9.039364891 8.618762116 8.744281334 8.701106309 224472736 phenol_oxidase Carbon cycling Carbon degradation Lignin Laccaria bicolor superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria; 9.29575182 9.249176459 9.306865781 8.648504141 8.65440693 8.741382396 8.520205855 8.548644316 8.430318748 8.536197869 8.558482951 8.935822757 83373796 ChrA Metal Resistance Chromium Rhodobacter sphaeroides ATCC 17029 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 9.892432465 9.803660102 9.869341609 9.074069192 9.120189395 8.786172133 9.177208692 8.995962749 9.075866504 9.091230071 9.307158311 9.301841488 163664452 ppx Phosphorus Phosphorus utilization Methylobacterium extorquens PA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 12.06950699 11.65027781 11.93328002 11.29253246 11.22480015 11.21928084 10.71862835 10.61037937 11.53689924 11.22926421 11.16171312 11.10029783 197628933 pstB Stress Phosphate limitation Thermococcus barophilus MP 8.676997616 8.64467875 8.838705131 8.092964662 7.954867177 8.077187701 7.638096128 7.234228801 7.799952402 7.642483245 7.940723706 40745790 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 8.548273722 8.759561214 8.545451482 8.236546012 8.223567407 8.119517045 7.8222767 7.70109093 8.328487428 7.480787377 7.639152962 8.162535227 209401902 narG Nitrogen Denitrification uncultured bacterium 9.463113759 9.17252821 9.418913834 8.809483346 9.041563955 8.667185287 8.802613397 9.032008026 8.65725509 9.141733973 9.298491122 9.237100939 115516327 hrcA Stress Heat shock Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.506977838 9.274980657 9.232952039 8.996038911 8.935859445 8.799087081 9.121604473 8.681543419 9.07685241 8.845257266 8.988287199 9.063143319 209401722 narG Nitrogen Denitrification uncultured bacterium 8.603098659 8.370730016 8.470326495 8.143001881 7.65772658 7.924256676 7.405924068 7.2267092 7.59502552 7.758659914 7.959632924 94425345 MFS_antibiotic Antibiotic resistance transporter Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.086801368 8.005059002 8.043760214 7.73747681 7.78819575 7.867779892 7.497420683 7.802691116 7.393317222 7.401534936 7.482206828 126105515 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 9.014378706 8.695001006 8.797593816 8.365340196 8.077910007 8.073023723 7.948560487 8.018448273 8.116285059 8.074260433 8.055941115 8.30258981 170720003 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.729628723 8.729311562 8.714099883 8.803023657 8.746872677 8.662789194 8.399865191 8.900167088 8.704466156 8.686285532 8.668175989 8.781359395 142057 nifH Nitrogen Nitrogen fixation Anabaena sp. L-31 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena; 7.255437119 6.860557172 6.707944243 6.807953946 7.36057767 189496218 narI Stress Oxygen limitation Chlorobium phaeobacteroides BS1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 8.992212008 8.910008089 9.06950253 8.425810547 8.300401323 8.196483254 8.075785885 8.126356596 8.325045907 8.151565705 8.151244918 8.397229105 87125501 sigma_70 Stress Sigma factors Synechococcus sp. RS9917 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 9.736212085 9.817070067 9.793591124 9.452564718 9.385212591 9.342379015 9.044664412 9.178499728 9.025736547 9.202231551 9.276688364 9.407033617 139478623 mer Metal Resistance Mercury uncultured soil bacterium superkingdom:Bacteria; 8.937819388 8.467320387 8.808101948 8.776154569 9.000995238 8.467398511 9.209822852 8.406701754 8.860338525 9.099104974 8.643753706 146217337 mmoX Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 9.163792434 9.328886254 9.105413496 9.256509665 9.214310814 9.127613618 9.261714022 9.263354742 10.00269185 9.631317406 9.948680132 9.848299999 145248179 tftH Organic Remediation Aromatics Chlorinated aromatics Aspergillus niger 8.199111781 8.138872834 7.466918168 7.812926216 7.722028824 7.536228608 8.034800923 7.713359846 8.144952673 8.095371554 7.597299041 110680113 pstB Stress Phosphate limitation Roseobacter denitrificans OCh 114 8.741279189 8.82097073 8.835416007 8.165027623 8.594354177 8.488291167 8.508054978 8.726373328 8.771672272 8.380561423 8.348652456 8.646228693 110599661 linB Organic Remediation Pesticides related compound Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.164093064 8.043462942 7.888709246 7.700383232 7.755807379 7.308905662 7.996109765 7.938983305 7.672097926 7.681127457 7.488224753 225128153 AceB Carbon cycling Carbon degradation others Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 9.018772822 9.034476732 9.032081254 8.229106623 8.376951101 8.371219453 8.713532971 8.456524524 8.925452624 8.379850916 8.58878442 8.247298936 42522821 dnaK Stress Heat shock Bdellovibrio bacteriovorus HD100 8.568106017 8.435711582 8.637135172 7.715608565 7.869100127 7.553610677 7.341156814 7.566935202 7.787224035 7.804674992 144899381 sox Sulphur Sulphur oxidation Magnetospirillum gryphiswaldense MSR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 7.742941772 7.576468958 7.408328781 7.206526818 7.199107519 7.879672679 7.253756826 7.018231228 7.251835939 108772041 akbF Organic Remediation Aromatics BTEX and related aromatics Mycobacterium sp. MCS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.837282245 8.812605796 8.538466169 8.383311802 8.153706826 8.28321541 8.564317248 8.243085589 8.293935012 8.182080056 8.163775936 8.165338797 119537106 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 9.336564777 9.020393242 9.732580318 9.831462131 9.974178908 9.945361861 9.419090801 10.10558468 9.082261801 9.871366031 9.801490131 10.32314325 239816975 sigma_24 Stress Sigma factors Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 9.193461171 8.596325861 8.973349714 8.719398768 8.626397908 8.590571356 8.360017743 8.702332731 8.369541943 8.69002921 8.728295346 8.695988057 168235563 SMR_antibiotics Antibiotic resistance transporter Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 8.805024923 8.727481766 8.786274512 8.314654842 8.159187519 8.080109287 8.045307551 7.981524555 8.034429048 8.135035885 8.056524177 221089232 AceB Carbon cycling Carbon degradation others Geobacillus sp. Y412MC61 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.812621904 8.842510885 8.699371581 8.647617192 8.476402264 8.240650434 8.833869019 8.912832508 8.894325282 8.647954606 8.47226498 8.313632971 187718536 alkB Organic Remediation Other Hydrocarbons Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8.482344461 8.59990888 8.462691227 8.454725317 8.679824254 8.679634936 8.620906047 8.706478786 8.192605325 8.601063484 8.155124665 194292483 pimF Organic Remediation Aromatics Aromatic carboxylic acid Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 8.437431924 8.398820796 8.440345083 8.552040952 8.137117172 7.850180824 8.152020171 8.262644854 7.906913433 7.762740098 7.865227874 154159011 sigma_24 Stress Sigma factors Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.722150206 8.582750164 8.673715952 8.099942895 8.124442901 8.542406266 8.332200538 8.290048056 8.266198305 8.362984753 8.351498187 8.580181175 157845782 cytochrome Energy process Energy process Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 7.878873745 7.817069778 7.829736465 7.633827889 7.329365949 8.037718321 7.531844557 7.560554416 8.0116245 238720982 pap virulence adhesin Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 8.34892088 8.781892846 8.924503952 8.368890594 8.533772611 8.474873624 8.404648893 9.01647194 8.714923899 8.825163329 8.4416595 8.69168871 89512896 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.844684509 8.726112044 8.6430299 8.506594527 8.539297497 8.302683819 8.337422041 8.646852026 8.455114212 8.481560797 8.454992829 8.639900015 126179353 gyrB other category gyrB Methanoculleus marisnigri JR1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanoculleus;species:Methanoculleus marisnigri; 8.668078454 9.09226989 8.851695382 8.619215455 8.551557407 8.580388793 8.757532235 8.985737179 8.730664686 8.705207389 8.836009254 94428141 trzN Organic Remediation Herbicides related compound Oceanobacter sp. RED65 8.42086016 8.243044497 8.009644213 8.078627901 7.731140696 7.990306829 7.308944976 8.081595029 7.988027038 7.662781461 8.099130704 8.097809713 154499897 glnA Stress Nitrogen limitation Bacteroides capillosus ATCC 29799 8.253022252 8.18743585 8.577359999 8.08517102 7.894037421 7.620817337 7.610944822 8.309804991 8.207970889 8.083424995 8.297826882 169758175 nitro Organic Remediation Others Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.917509113 8.89159715 9.195666696 8.911079437 8.872104188 9.037164851 8.212123194 8.872204 8.303749522 8.573988946 8.83447519 8.568939036 78193991 pimF Organic Remediation Aromatics Aromatic carboxylic acid Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 8.403460854 7.95497901 8.34066407 7.538900865 7.422670197 7.114797669 7.007385027 7.425684331 7.251221395 7.518727653 283814209 sigma_24 Stress Sigma factors Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 8.200499887 8.228911337 8.079833387 8.055866482 8.117971745 8.333794373 8.122714825 8.322922243 8.305109772 8.346771463 8.248211979 95112320 silC Metal Resistance Silver Pseudomonas superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae; 9.216771255 9.350536953 9.163459653 8.608841115 8.345403584 8.980394655 9.118876998 8.679554931 9.106665108 8.893981644 9.073264794 8.985949624 113731946 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 9.898140168 9.934040904 9.908264237 9.538083065 9.308554394 9.372199399 9.534566046 9.267650996 9.360780246 9.350296626 9.378304629 9.452052722 270735340 hly virulence hemolysin Frankia sp. EuI1c superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.518781202 8.284181209 8.467855249 8.433246768 8.422853726 8.12935944 7.913616969 8.457055899 8.256015324 8.421001122 8.285909963 8.421605017 83316878 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.695670071 9.786443747 9.757175757 9.024031277 8.683983351 9.149286168 9.444418433 8.92789503 9.450663461 9.329247053 9.52149685 9.544527356 74316965 atzA Organic Remediation Herbicides related compound Thiobacillus denitrificans ATCC 25259 8.081456674 8.118978788 8.164121233 8.031646345 7.902171335 8.240511409 8.098025083 8.408041369 8.218418089 8.324954 8.072219788 211957439 ppx Phosphorus Phosphorus utilization Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 8.862557139 8.527108026 8.747734628 8.751516038 8.709824203 8.214668775 8.909098288 8.671135632 8.763039907 8.537760358 222437647 obgE Stress Radiation stress Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 8.743488574 8.57850148 8.54527503 8.625585621 8.330442037 8.289190759 8.4711366 8.529802593 8.434877063 8.594449586 8.299259534 35212857 Catechol Organic Remediation Aromatics Other aromatics Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 8.462644889 8.344994672 8.378623722 8.543982463 8.682099501 8.500865299 8.171583645 8.848531796 8.216828939 8.610926739 8.49368487 8.674981851 224367210 fnr Stress Oxygen stress Desulfobacterium autotrophicum HRM2 8.594336722 8.596307129 8.749390622 8.279369711 8.318289612 8.099123656 7.879457292 7.801321408 8.349353134 7.953964346 8.159864507 8.197914042 223585979 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.329754536 8.235120873 8.255401493 8.455739869 7.99809825 8.3543077 8.260685585 7.847693759 8.463679634 7.918883174 8.138881409 7.88011912 155964465 nasA Nitrogen Assimilatory N reduction uncultured marine bacterium superkingdom:Bacteria; 8.381928187 8.451391949 8.632117776 8.355363228 8.199996159 8.016153131 7.970278618 8.533843209 8.194992508 8.19188248 8.352317919 110622303 ahpC Stress Oxygen stress uncultured methanogenic archaeon RC-I superkingdom:Archaea;phylum:Euryarchaeota; 8.4634492 8.532029748 8.738276433 7.904194799 8.030931434 8.285444903 8.511742832 7.992974766 8.453749685 8.249766597 8.136656941 8.303616738 118173735 ureC Nitrogen Ammonification Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.835856607 8.875908878 8.85728857 9.017983264 8.691829556 8.634643169 8.938491869 9.018422989 8.757897858 124485074 dsrB Sulphur sulfite reductase Methanocorpusculum labreanum Z superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanocorpusculaceae;genus:Methanocorpusculum;species:Methanocorpusculum labreanum; 8.798627834 8.756374723 9.016125769 8.348595931 8.395874279 8.333647957 7.872264835 7.920179037 8.014263492 8.026158194 8.095636173 8.453169211 120593784 fnr Stress Oxygen stress Polaromonas naphthalenivorans CJ2 9.485488679 9.357888993 9.418356209 9.246681223 8.763497663 9.06761525 8.45641993 9.147841976 9.118624517 8.988210785 8.95299807 182416199 CopA Metal Resistance Copper Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 8.817639127 8.990173749 8.662511366 8.828909389 8.888553545 8.09805079 8.584817165 8.948694412 8.162054405 223940674 sigma_24 Stress Sigma factors bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 7.694216308 7.408708253 7.134954234 7.531511259 7.114561629 8.08094051 7.683187311 7.59304283 7.141070935 78698297 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 10.40963129 10.38377386 10.23639922 9.548283766 9.041068546 9.417748045 9.71999776 9.917193786 9.580591203 222524221 CadA Metal Resistance Cadmium Chloroflexus sp. Y-400-fl 9.010524606 9.198000773 8.954067986 8.721194592 8.637425001 8.364856216 8.515493125 8.470812122 8.653198905 8.408293926 8.324009613 8.601080854 77390256 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 8.978497999 8.76605672 9.08328698 8.644261183 8.574709754 8.323173856 8.349558232 8.501636692 8.618903591 8.501442325 8.518258736 8.421709744 119883836 bphF1 Organic Remediation Aromatics Polycyclic aromatics Salinispora arenicola CNS205 9.587892291 9.691703003 9.726256359 9.097307314 9.137250783 9.073354962 9.743423626 9.285594113 9.663142163 9.206175514 9.369235121 9.262418863 77380811 ureC Nitrogen Ammonification Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 9.644393702 9.521739168 9.321750143 9.319288353 9.319281673 9.114769389 9.325815927 9.625988946 9.736810326 9.23868619 9.294805058 9.406888706 66801829 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 9.285122635 9.196395376 8.978605475 9.102785101 9.040703767 8.717294183 8.943257956 9.008257249 8.819750313 8.98571042 8.969121358 8.818691039 15791066 trzA Organic Remediation Herbicides related compound Halobacterium sp. NRC-1 9.306358878 9.55201024 9.222978525 9.067761159 9.554712287 9.583111075 9.75374618 9.00200767 9.555014264 8.760098697 9.207403452 8.806576701 124258845 exaA Organic Remediation Chlorinated solvents Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 8.711343587 8.673227657 8.543902509 9.019222757 8.496889665 8.2747535 8.739181554 8.706926806 8.700493488 8.631095221 8.577463746 8.176975405 238714241 proV Stress Osmotic stress Yersinia bercovieri ATCC 43970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 9.556195166 9.055307945 9.145040726 9.313430954 8.882770387 9.41105935 9.675917568 9.457604468 9.054169558 9.039982894 9.287007603 8.98719934 112379411 pcaG Organic Remediation Aromatics Other aromatics Cupriavidus necator superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 7.83247926 8.04702041 7.704824015 7.714739198 7.726569796 7.72309856 7.523949084 7.642144896 7.527046838 7.334823282 161165458 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 9.981033025 10.12006271 10.30676678 10.21274041 10.26283541 9.986192121 10.21446574 10.56972278 10.40759909 10.61887074 10.39449664 10.55605395 51534865 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.524331147 8.485331586 8.578881294 8.021351235 7.814607538 7.849332015 7.667385573 7.53695177 7.954479462 7.763719086 7.82220614 8.095141371 86280934 MFS_antibiotic Antibiotic resistance transporter Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.330401912 8.269514218 7.400721843 7.442957236 7.91182194 7.57087241 7.272057474 7.566658215 7.652967274 162954634 gyrB other category gyrB Renibacterium salmoninarum ATCC 33209 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Renibacterium;species:Renibacterium salmoninarum; 8.415096912 8.086405997 7.574203602 7.642789215 7.732070525 7.597829187 7.693360754 7.843417138 7.942238158 7.854655616 7.783712488 17431447 narG Nitrogen Denitrification Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 8.169473295 8.277222503 8.672713429 8.670161213 8.475114866 8.123781397 8.596142002 8.531296486 8.491907852 8.372206236 8.294659606 152974220 TerD Metal Resistance Tellurium Bacillus cereus subsp. cytotoxis NVH 391-98 7.205401633 7.145664724 7.297658576 6.994574849 7.548790833 255060802 fnr Stress Oxygen stress Geobacter sp. M18 9.351320341 9.212637847 9.165631598 8.738224618 8.417324225 8.527687839 8.505322628 8.582038392 8.586744068 8.481024811 8.333630177 8.733368036 170748947 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 9.674475221 9.567876305 9.814441694 9.110009861 9.119588636 9.045925434 9.046424619 8.951353108 9.002618453 9.18157628 9.186244235 9.376936273 257780793 glnA Stress Nitrogen limitation Desulfotomaculum acetoxidans DSM 771 8.355894025 8.054329329 8.144883282 7.81798461 7.64157192 7.513960459 7.917856471 7.934452448 7.549872956 7.252672489 7.650972945 239816104 fnr Stress Oxygen stress Variovorax paradoxus S110 8.633849401 8.264785774 8.717380352 8.130831476 8.115523888 7.961879155 8.213352545 8.591484832 8.501893411 8.459772933 8.323493871 8.329958052 108766498 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 8.445149344 8.410615833 8.566566982 8.181199186 8.092685974 8.380172944 8.615765366 8.4181995 8.294842309 8.146030823 8.277000205 8.01395855 205824735 nahA Organic Remediation Aromatics Polycyclic aromatics Lysobacter sp. OC7 8.891364137 9.021230307 8.939341125 8.490119305 8.621990018 8.507695935 8.151135028 8.177580312 8.157339971 8.178875677 8.374551226 148253386 napA Nitrogen Dissimilatory N reduction Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.681841164 8.886290716 8.436659151 8.662507376 8.575218728 8.648005787 8.750563355 8.763979545 8.884753485 9.219697662 9.148060822 8.862362108 82716042 CopA Metal Resistance Copper Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.673252417 8.614242833 8.833644161 8.263404943 8.36033543 8.386020905 7.938624208 8.469724725 8.223871061 8.467308039 8.137777924 8.561455757 75992409 pcaG Organic Remediation Aromatics Other aromatics Terrabacter sp. DBF63 9.484117581 9.765193064 9.538557941 8.90035259 8.969632243 8.838532916 9.050511824 8.891960571 9.186279163 9.083883057 8.987034523 158315140 pcc Carbon cycling Carbon fixation Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 9.158871064 9.314393597 9.275070954 8.683443726 8.376932179 8.596714307 8.766288675 8.505281546 8.52488098 8.407810207 8.457762046 8.637888238 237666821 obgE Stress Radiation stress Clostridium butyricum E4 str. BoNT E BL5262 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium butyricum; 8.147616416 8.131312784 7.134859368 7.068800893 7.055966531 6.930314886 7.342643327 6.855572592 7.446294124 206579037 BADH Organic Remediation Aromatics Other aromatics Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 8.532870848 8.312860238 8.725049025 8.251233739 8.443754556 8.394051903 8.368065371 8.590249655 8.53919006 8.808042557 8.388315969 8.205748096 94553603 sigma_24 Stress Sigma factors Candidatus Koribacter versatilis Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 8.749540078 8.576593215 8.758343003 8.798647967 9.111073167 8.787261874 8.922162065 8.975809217 78062246 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.635891902 8.961043242 8.623194718 9.01735144 9.089659532 8.878782303 8.861290512 9.099218771 9.129948439 9.217163792 8.985915639 9.105314323 157411516 napA Nitrogen Dissimilatory N reduction uncultured prokaryote 7.223788808 7.570952678 7.409861623 7.311748949 7.472916682 240170513 ahpC Stress Oxygen stress Mycobacterium kansasii ATCC 12478 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 8.606917005 8.407348347 8.461770117 7.554434968 8.006086694 7.924924358 8.394102964 7.204650765 8.500291891 7.635083029 7.64965132 7.914405214 82501221 FTHFS Carbon cycling Acetogenesis Caldicellulosiruptor saccharolyticus DSM 8903 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Caldicellulosiruptor;species:Caldicellulosiruptor saccharolyticus; 7.94074281 7.859283244 7.824759298 7.571616783 7.767712495 7.667328141 7.491929811 8.073503847 7.874271574 166862082 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 9.504723478 9.439146657 9.372782668 26278844 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.155924089 9.332085836 9.007660137 8.309912639 8.166641866 8.789080065 8.799766379 8.364517603 8.933332048 8.542683509 8.930656875 8.471927057 146406878 tfdA Organic Remediation Aromatics Chlorinated aromatics Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.440360614 8.189828941 7.56735291 7.398565639 7.598235985 7.673068177 7.36065546 7.900816935 7.938765081 119958855 pstB Stress Phosphate limitation Mycobacterium vanbaalenii PYR-1 8.925204079 8.948388276 9.269328723 8.152654069 8.046503128 8.070817156 7.58375071 8.246428844 7.797946329 7.908501113 8.409430178 5578708 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas xenophaga superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 9.003495149 8.935366533 9.04398894 9.113624992 9.070492131 8.69148337 9.092433641 9.106422949 8.966435332 8.850237945 8.689653701 9.002090376 114738227 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 8.126543899 8.167737031 8.274604925 7.377107339 8.053723662 8.109683101 8.174557175 7.70052508 8.203191179 8.094751502 8.15538188 8.154057593 85069178 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 9.362178024 9.445322559 9.409071644 8.930393366 8.918638554 8.862899954 8.893468036 9.025334356 8.83157677 8.925542286 8.977802218 9.092077925 188026296 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia stuartii; 7.829726469 7.689837598 7.157512187 7.720948947 7.409959837 7.453907746 8.201351997 229917220 sigma_24 Stress Sigma factors Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 8.238438367 8.354985459 8.119165836 7.621423421 8.010086881 8.07427102 6.95354777 7.596387876 7.409233012 7.737135026 116698740 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 7.89302345 8.244518772 8.148086255 8.411489129 8.460469847 8.337052889 8.285651507 8.488279226 8.737468255 8.755969029 8.431746964 8.393698326 26278738 narG Nitrogen Denitrification uncultured bacterium 9.139732345 9.007785361 8.607377589 8.007458129 8.735308113 7.768105052 8.302312598 8.629249977 8.720788574 154492571 catB Organic Remediation Aromatics BTEX and related aromatics Parabacteroides merdae ATCC 43184 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides merdae; 7.88275706 7.758703614 7.208885178 7.476933135 7.705501009 7.341719954 7.216908227 7.647083204 7.41369075 7.675067482 254292542 obgE Stress Radiation stress Hirschia baltica ATCC 49814 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hirschia;species:Hirschia baltica; 8.211857589 8.199423406 7.440169084 7.564204468 7.710047996 7.850586408 6.968092422 7.444726905 7.549798392 7.726263308 262407730 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Bacteroides sp. 2_1_22 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 8.357701483 8.321681518 8.20738607 8.31413678 8.270307707 7.941848821 7.969647996 8.008036981 7.936023825 7.706885713 8.118220926 83852595 sigma_32 Stress Sigma factors Oceanicaulis alexandrii HTCC2633 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis;species:Oceanicaulis alexandrii; 8.67997766 8.679244343 8.603813309 8.511239169 8.605445719 8.583825404 8.425547455 8.76133229 8.689290486 8.686862857 8.920533395 8.943486817 77384111 MATE_antibiotic Antibiotic resistance transporter Pseudomonas fluorescens Pf0-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 9.201506812 8.831089447 8.732313469 7.670117415 8.179302306 7.914249025 8.051613786 8.38061359 8.26500814 8.256696442 8.098099192 7.959971717 13814513 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sulfolobus solfataricus P2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus;species:Sulfolobus solfataricus; 8.933027826 8.874477696 8.980761306 8.27575068 8.1456319 8.159234242 8.040998801 7.936900084 8.217573119 7.986070672 7.950121616 8.383631847 159881980 cap virulence capsule Hydrogenivirga sp. 128-5-R1-1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenivirga; 9.361411223 9.105825664 9.283621059 8.649601494 8.014931623 8.206454629 8.16302149 8.118316992 8.210949306 8.122328514 8.344381842 8.514770074 284007028 type_III_secretion virulence secretion Arsenophonus nasoniae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Arsenophonus; 8.297302212 8.082303528 8.334275867 7.776451762 7.818334639 7.563127067 7.567591467 7.831005125 8.084065459 7.87853137 7.875183913 7.80974832 198269163 pcc Carbon cycling Carbon fixation Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 7.873346753 8.131994069 8.364106615 7.658420564 7.76678847 7.954727101 7.931358173 7.892269939 8.117585538 7.884962026 7.444666112 7.752013897 166408352 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 8.965582139 9.064348003 9.138383248 7.936959974 8.130894828 8.415419548 8.946149555 8.097350043 8.705076837 8.394208569 8.525225524 8.577386866 182382478 narG Nitrogen Denitrification uncultured bacterium 9.452724473 9.643672091 9.489343705 9.719081566 9.124768409 9.577249366 9.467849063 50236433 B_lactamase Antibiotic resistance Beta-lactamases Ralstonia pickettii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 10.24030472 9.960864325 9.902360202 9.921367698 9.93226611 9.983489075 9.797083644 10.17830068 9.633468218 9.851041247 10.17231097 9.825733041 108771092 tfdA Organic Remediation Aromatics Chlorinated aromatics Mycobacterium sp. MCS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.37471615 8.582566656 8.436015193 7.968211656 8.281946038 8.15558799 8.379953483 7.166084572 8.602962634 7.652987271 7.699875889 7.930389447 110818369 CadA Metal Resistance Cadmium Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 9.030414251 8.829454172 9.043711256 8.656529439 8.873297187 8.668762043 8.502877829 8.941548231 8.572760536 9.192303042 8.663462592 9.135083798 85709407 ahpF Stress Oxygen stress Erythrobacter sp. NAP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 8.566326073 8.826170624 8.529657178 7.99438807 8.312682579 8.507846221 9.069018365 8.081712248 9.021021212 8.137397185 8.177668615 8.065400748 148850060 TehB Metal Resistance Tellurium Bacillus sp. SG-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 8.344811107 8.17452736 8.35069193 8.33011647 8.252950766 7.856762726 8.064886434 8.188734264 8.171260994 8.143352748 7.731868244 91687041 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.314564442 8.442869532 8.379068965 8.210164607 7.948185199 7.920760007 7.663351094 7.935679906 7.871032205 7.809016095 7.809105479 7.917372643 258553509 rubisco Carbon cycling Carbon fixation Nakamurella multipartita DSM 44233 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 8.531486351 8.39073376 8.533048828 7.998049007 7.725106329 7.928912635 7.984492495 7.582937811 8.100721491 7.884834231 7.695588596 8.168090922 171914265 TerD Metal Resistance Tellurium Verrucomicrobium spinosum DSM 4136 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Verrucomicrobium;species:Verrucomicrobium spinosum; 8.344867403 8.526860465 8.432546687 7.963050724 7.954436356 7.70847056 7.63380458 7.61176143 8.013325113 7.541098598 7.526843169 7.999470279 242222987 glx Carbon cycling Carbon degradation Lignin Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 8.550628346 8.709722113 8.537423829 8.368100973 8.121069108 8.053989991 8.17945047 8.010555736 8.135770684 8.196243751 90334548 rubisco Carbon cycling Carbon fixation Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 8.601974958 8.708489653 8.675463857 8.0759353 8.387602575 8.546340062 8.628616494 8.511623378 8.706586986 8.646741216 8.410637387 8.49592722 183581426 alkK Organic Remediation Others Kocuria rhizophila DC2201 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 8.522110153 8.789805293 8.76777469 8.885704829 8.893141212 8.40102932 8.878961659 8.80130782 8.568854523 8.786489056 8.580027006 8.624411808 90424439 SMR_antibiotics Antibiotic resistance transporter Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.601394507 8.300089517 8.521361607 8.436326021 8.53773671 8.191096432 8.339229874 8.745938094 8.385164481 8.605690654 8.559112663 8.33603581 115525329 Mex Antibiotic resistance transporter Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.990978832 9.199630891 8.996213975 8.446564123 8.507261102 8.57099555 8.917266814 8.463296285 8.913768647 8.603474427 8.878591785 8.688610706 145220118 grpE Stress Heat shock Prosthecochloris vibrioformis DSM 265 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeovibrioides; 8.158559345 8.102687685 8.270654278 7.81998665 7.739682388 7.679813696 7.702153604 7.714056962 8.070394682 7.660589557 7.512479165 7.461114442 12667584 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium UMTRAdsr624-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 8.298029878 8.229794345 8.528132513 7.161376052 7.363624675 7.406480865 7.224483971 7.551952153 7.545797327 7.610550518 221726225 dnaK Stress Heat shock Agrobacterium radiobacter K84 8.553906413 8.542950837 8.697802737 8.197753927 7.957489094 8.176533714 8.283280917 7.779031302 8.741454895 7.836877828 7.817889642 8.064852521 239982330 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces albus J1074 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces albus; 9.865359162 10.16428441 10.05429651 10.37342916 10.08242151 9.884039456 10.38095088 10.25128146 10.02137617 10.30145069 10.27281591 10.18292131 255057879 ahpC Stress Oxygen stress Geobacter sp. M18 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 9.452250367 9.702510333 9.593582777 9.129362151 9.076163982 8.951810814 9.246593075 9.197074134 9.040628146 9.317357079 9.346599529 9.603622361 209965038 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 9.908866015 9.600342184 9.752351366 9.383064771 9.1621719 9.147146417 9.570282794 8.717871699 9.705053891 9.242073799 9.322034143 9.319082424 114799243 ppk Phosphorus Phosphorus utilization Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 8.120574883 8.500485278 8.385319389 7.955191653 8.31787935 8.462086099 8.608025467 8.3660353 8.414007674 8.403745363 8.303282613 8.466138532 116747543 ChrA Metal Resistance Chromium Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 9.197827935 9.327628186 9.357001469 8.860657414 8.850978699 8.735910235 8.713043079 8.670944277 8.759502269 8.777595586 8.751552566 8.983834727 86281200 nmoA Organic Remediation Aromatics Nitoaromatics Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 10.24261773 10.21711622 10.11780131 9.28697289 9.255468911 9.424048733 9.839389374 9.390649798 9.620888532 9.579440351 9.793414908 9.641157257 114341396 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 8.171193342 8.17499366 8.154307446 7.743997668 7.596330091 7.470457857 7.4783822 7.823009181 8.076538792 7.948264709 7.691516611 7.709375345 16082372 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Thermoplasma acidophilum DSM 1728 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermoplasmata;order:Thermoplasmatales;family:Thermoplasmataceae;genus:Thermoplasma;species:Thermoplasma acidophilum; 8.829033178 8.753049967 8.680822423 8.232533047 7.954522517 7.983318565 7.840901233 7.68122426 8.073243263 7.976619372 7.813716329 8.167907082 116201967 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 9.421612201 8.871798773 9.268216005 8.967409297 9.105958281 9.096205569 8.895914206 9.390000144 8.72463722 9.250393385 9.360812267 9.374887177 72121305 Catechol Organic Remediation Aromatics Other aromatics Ralstonia eutropha JMP134 9.446393805 9.29657178 9.280738135 8.829471079 8.952619765 8.696489624 8.790019383 9.008404371 8.656625536 9.203904538 9.229581267 9.326451676 55380290 pcc Carbon cycling Carbon fixation Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 8.213367259 8.022983758 7.439165631 7.910261614 8.225957341 8.043661665 7.562347531 7.674419747 7.402675118 7.666411564 89047094 ara Carbon cycling Carbon degradation Hemicellulose Oceanicola granulosus HTCC2516 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 8.716784137 8.626782938 8.459461874 8.002090105 7.614765959 8.06540301 8.313952001 8.468090991 8.258046715 8.435998956 7.968984479 169760229 atzB Organic Remediation Herbicides related compound Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.763653201 8.763773047 8.932562858 8.710761588 8.776269989 8.466859691 8.889217195 9.111450942 8.8330142 9.010226249 8.526330869 9.013568147 49530588 cbdA Organic Remediation Aromatics Chlorinated aromatics Acinetobacter sp. ADP1 8.994227973 8.987728753 9.234056326 8.895274788 8.604618383 8.55615476 8.602647455 8.744297493 8.658658531 8.774540352 8.449983594 8.655820499 227543193 gdh Nitrogen Ammonification Corynebacterium glucuronolyticum ATCC 51866 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glucuronolyticum; 8.058876566 7.972197239 7.821653927 7.945732095 7.642166919 7.747127063 8.04904447 8.041590758 7.835926983 7.780399173 7.899331668 82409501 TehB Metal Resistance Tellurium Nitrosospira multiformis ATCC 25196 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira;species:Nitrosospira multiformis; 9.057690559 9.245618293 9.293837965 8.676139096 8.84412638 8.65559347 8.554682468 8.866966574 8.629022413 8.817588498 8.965986692 8.927023317 110285070 pcc Carbon cycling Carbon fixation Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 8.537902681 8.334140598 8.535222524 8.497403732 7.848060433 8.426518632 8.665904217 8.220916453 8.73776203 8.05996501 8.270983696 8.190631787 260437194 amyA Carbon cycling Carbon degradation Starch Butyrivibrio crossotus DSM 2876 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Butyrivibrio;species:Butyrivibrio crossotus; 8.398823391 8.46478883 8.605899051 8.118053426 8.001182477 7.976945208 7.808166071 7.768623685 8.025858691 7.856778266 7.711588224 7.798028069 220922656 sigma_24 Stress Sigma factors Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 8.891298963 8.731777779 8.68853663 8.598830749 9.01567197 8.852578442 8.98179273 9.132302485 70993932 amyA Carbon cycling Carbon degradation Starch Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 8.942035842 8.917266816 9.2946079 8.722229666 8.57982088 8.345481338 8.147006154 8.247344816 8.4953186 8.414314181 8.552869145 78697507 CopA Metal Resistance Copper Bradyrhizobium sp. BTAi1 8.817446178 8.652298644 8.84347872 8.222791725 8.41117362 7.652337972 8.227447767 8.039042224 8.069275266 8.523655548 8.550781279 8.6614001 134026356 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces halstedii superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 9.086371986 8.716559475 8.633939856 9.345901555 9.120865109 9.36621317 8.617178395 9.311849952 8.616774453 9.222008071 9.341020645 8.545697767 119698481 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 8.095686274 7.80889373 7.051746605 6.955916146 78166202 rubisco Carbon cycling Carbon fixation Pelodictyon luteolum DSM 273 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon luteolum; 8.863395251 9.117147866 9.033608256 8.413538412 8.329639725 8.272894035 7.79544567 8.029391091 8.218510563 8.217017464 8.064911459 8.597318611 164659143 glx Carbon cycling Carbon degradation Lignin Malassezia globosa CBS 7966 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Exobasidiomycetes;order:Malasseziales;family:Malasseziaceae;genus:Malassezia;species:Malassezia globosa; 8.719993063 8.790381325 8.830844867 8.538955756 8.357380413 8.000266595 8.5727775 8.588789152 8.574892353 8.604992472 8.422381299 8.168424725 119768675 gyrB other category gyrB Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 8.80763847 8.510323316 8.648058098 7.84875402 8.124982154 8.287945105 8.323667858 7.84480253 8.717231358 8.34119606 8.291757747 256686144 endochitinase Carbon cycling Carbon degradation Chitin Jonesia denitrificans DSM 20603 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 8.834658885 9.299075897 8.81579368 8.405509878 9.070085148 9.267732541 9.342171402 9.072920687 8.932468321 8.964335378 9.225839347 9.276762678 212527446 Arylest Organic Remediation Aromatics Other aromatics Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 8.245093794 8.137807668 7.248727109 6.909251163 7.184675195 6.831174064 7.130644021 7.011614041 7.336132672 171988630 ctsR Stress Protein stress Exiguobacterium sibiricum 255-15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 8.549069394 8.482740391 8.851305649 8.142995544 8.21172241 8.256623113 7.674135288 7.690026805 7.811103921 7.699583584 8.265817483 260220986 pstC Stress Phosphate limitation Curvibacter putative symbiont of Hydra magnipapillata superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 8.065708019 8.309739295 7.289591044 6.767623116 7.447498379 7.082197225 7.144763165 179346795 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 9.224507712 9.275654969 9.045707011 8.663845961 8.345929744 8.446653152 8.626925041 8.508509575 8.774948316 8.404297726 8.559419903 8.720003096 113524845 tfdA Organic Remediation Aromatics Chlorinated aromatics Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 9.069735598 8.747918634 8.85787551 8.531336914 7.802584037 8.263181157 8.40400995 8.425234882 8.385306872 8.368941599 8.519587165 8.391222996 217976494 ChrA Metal Resistance Chromium Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 8.524691716 8.346943129 8.461674211 8.372647945 8.792245699 8.464682155 8.314684405 9.006025 8.596620036 8.383344639 8.570879271 238723202 B_lactamase_C Antibiotic resistance Beta-lactamases Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 8.176235884 8.147955213 8.134901643 8.133321738 7.872821498 8.065624336 8.37558442 8.421509732 8.340992504 8.019003251 7.954684733 193225757 cap virulence capsule Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 10.86777699 10.81082283 10.77087773 9.615908677 9.497790057 9.042816462 238715226 pstA Stress Phosphate limitation Yersinia bercovieri ATCC 43970 8.779254178 8.677749308 8.814437194 7.988821112 7.95169234 7.985931217 7.83708633 7.810676626 8.079972338 7.798340034 7.783372531 8.131679509 125713538 cda Carbon cycling Carbon degradation Starch Clostridium thermocellum ATCC 27405 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 8.670763584 8.355589232 8.651316881 7.948359665 7.960797828 7.883386325 7.633574432 7.87236499 7.960687054 8.039378863 7.890309272 8.004691553 19909581 gyrB other category gyrB Caulobacter leidyia superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae; 7.677210041 7.745734182 8.216195578 7.663826074 8.143865372 8.048213135 8.050240071 7.822121419 8.079600015 113935317 pcc Carbon cycling Carbon fixation Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.66418718 9.041068752 8.788346117 8.419187974 8.2497545 8.51613141 8.705655238 7.998419336 8.74028435 8.145916855 8.149902816 7.982258187 39982965 pstC Stress Phosphate limitation Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 8.682784729 8.524645328 8.060340259 8.232517032 8.320343822 8.275955803 8.350040206 8.22813504 7.782672316 283951027 sigma_70 Stress Sigma factors Conexibacter woesei DSM 14684 9.005318938 9.29186544 9.113161954 9.028893257 9.213126994 9.017782489 8.86114967 9.161308962 8.96690795 9.477814323 9.435674248 8.874798033 239797195 AceB Carbon cycling Carbon degradation others Desulfovibrio magneticus RS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio magneticus; 8.17252043 8.37522557 8.380365687 7.566469661 8.038642084 7.628145052 7.502138392 7.528513386 7.451171675 7.938869541 46200026 pstA Stress Phosphate limitation Thermus thermophilus HB27 8.581255538 8.821656143 8.719559121 8.1993213 7.975967377 8.212449046 8.255694138 7.932421676 8.130737567 8.039163687 8.007202458 8.203173095 123961855 sigma_70 Stress Sigma factors Prochlorococcus marinus str. NATL1A superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 8.087845044 7.996008821 8.199879836 7.607646989 7.538088798 7.464935509 7.169143218 6.932456506 7.7738585 7.294652332 7.57691061 7.542687696 240103071 pstB Stress Phosphate limitation Thermococcus gammatolerans EJ3 8.919148363 8.846288408 9.081471262 8.370900718 8.459318506 8.20368314 7.969681722 8.201684463 7.929178843 8.307885314 8.299232662 8.616587104 56680245 nagI Organic Remediation Aromatics Aromatic carboxylic acid Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 9.291312758 9.119692217 9.239627647 9.149425707 9.046495877 9.085310631 8.593185855 8.90221359 8.812883649 9.003221208 9.099336221 223582016 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Tolumonas auensis DSM 9187 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Tolumonas;species:Tolumonas auensis; 7.27150626 7.23691697 7.146832766 6.650574287 7.149893718 6.858089763 121605103 pstB Stress Phosphate limitation Polaromonas naphthalenivorans CJ2 9.528376873 9.67695022 8.90429105 8.915220574 8.900211674 8.883234738 8.86139756 9.170348856 8.900115498 227856116 nplT Carbon cycling Carbon degradation Starch Lactobacillus plantarum subsp. plantarum ATCC 14917 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus plantarum; 8.951873808 8.753065981 8.658970397 9.151341136 9.096303341 9.088371179 8.726021108 9.466675815 8.762046551 9.13810789 9.22191731 9.373743964 49072907 Catechol Organic Remediation Aromatics Other aromatics Mycobacterium vanbaalenii superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 9.895248597 9.770846744 9.933092742 9.347694074 9.151690964 9.162094763 9.222788464 8.96324573 9.069002102 9.022505392 9.119888756 9.429290822 189424876 pcc Carbon cycling Carbon fixation Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 9.208013392 8.98528201 9.409192132 8.76080919 8.712262843 8.687399837 8.558265019 8.399842632 8.712275957 8.466410907 8.671599028 8.806547449 32445105 TehB Metal Resistance Tellurium Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 8.361915535 8.171811041 8.556608339 8.364338077 7.85494403 7.706384498 7.331108035 7.269423493 7.852919546 7.905422626 7.704562529 94502842 B_lactamase_C Antibiotic resistance Beta-lactamases Enterobacter cloacae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 9.475705945 9.309862336 9.414264126 9.168701865 9.380661006 9.470113939 9.283397832 9.433525661 9.437425008 9.104428537 9.518937341 9.154676297 229589790 xylA Carbon cycling Carbon degradation Hemicellulose Pseudomonas fluorescens SBW25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.714194004 8.579359002 8.727224548 8.744474403 8.596325081 8.407329274 8.490355562 8.913172484 8.657763421 8.732839302 8.434702056 8.65783965 198276813 ChrA Metal Resistance Chromium Bacteroides plebeius DSM 17135 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides plebeius; 9.155181815 8.790185911 9.156515 8.33617598 8.269029484 8.209162493 8.031177695 7.762358285 7.76550946 7.891162783 8.416930716 91780684 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 10.57302898 10.38342689 10.65192932 9.798326917 9.957188567 10.00079072 9.946311154 9.647950169 9.957279968 9.85220325 10.05478907 9.987461852 255513748 grpE Stress Heat shock Candidatus Micrarchaeum acidiphilum ARMAN-2 superkingdom:Archaea;phylum:Euryarchaeota;genus:Candidatus Micrarchaeum;species:Candidatus Micrarchaeum acidiphilum; 8.002965439 8.140932201 8.311428504 8.172033871 7.688066818 7.721899045 8.236855852 8.226630971 8.275894509 8.08121808 7.914493071 239820237 fnr Stress Oxygen stress Variovorax paradoxus S110 8.756034101 8.818931648 8.880576109 8.306102888 8.180541455 8.05521639 7.589587539 7.686233625 8.206770234 8.222272215 8.28813135 8.37931031 198248506 glucoamylase Carbon cycling Carbon degradation Starch Acidithiobacillus ferrooxidans ATCC 53993 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 9.516678795 9.227329534 9.382182383 8.896129834 8.709190298 8.617869121 8.69243872 8.606935917 8.489386941 8.666500541 8.669338691 9.016787275 169190099 gdh Nitrogen Ammonification Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 8.676502889 8.287145058 8.616023898 7.986505798 7.729022172 8.065269592 7.924145179 7.881157644 7.933483934 7.823745025 7.874532477 7.924544901 209401654 narG Nitrogen Denitrification uncultured bacterium 9.333197798 9.485800747 9.665690868 8.862674673 8.745861795 8.651914818 8.782408943 9.093582136 8.90864544 9.133753488 9.223969709 9.321996762 229554987 bglH Stress Glucose limitation Listeria grayi DSM 20601 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria grayi; 9.612365541 9.48341897 9.718617656 8.77897868 8.619466209 8.787459364 8.675493238 8.540417021 7.357451153 8.59222171 8.474921846 8.667053308 37527096 AmiE Organic Remediation Aromatics Other aromatics Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 9.341105807 8.958486785 9.067972343 8.48121274 8.386598473 8.28782521 7.876791445 7.809367491 8.247601934 8.358512089 8.351618418 159044084 pstA Stress Phosphate limitation Dinoroseobacter shibae DFL 12 8.244865716 8.416057997 8.468409735 7.524126277 7.89039795 8.07530823 8.183157765 7.005235613 8.21366424 7.632408156 7.73194343 7.50323519 13422062 xylanase Carbon cycling Carbon degradation Hemicellulose Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 8.688049986 8.502331744 8.479281641 8.681557933 8.44551953 8.181670087 8.460728282 8.463355886 8.444249487 8.461852819 8.443170293 7.837409342 212171526 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 8.152744869 8.074728515 8.111038807 7.308154597 7.150799247 7.305177975 6.576113055 7.597731314 50542694 rubisco Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.714018907 8.364271405 8.505821748 8.271716471 8.245918301 7.709830871 7.711163541 7.658368319 8.026874346 7.932380413 7.889933246 77820046 nirS Nitrogen Denitrification uncultured organism 9.022676306 8.503024113 8.421605603 8.729761611 8.302860868 8.079399176 8.837289752 8.631055818 8.927523427 8.44972877 8.433386534 8.395211915 160936848 ppk Phosphorus Phosphorus utilization Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 8.348070361 8.465984312 8.322729342 7.86810675 7.637117074 7.563867777 7.632354409 7.498645782 7.988626964 7.469118409 7.662957138 7.823818215 167664305 sigma_70 Stress Sigma factors Clostridium scindens ATCC 35704 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium scindens; 8.52659416 8.920246814 8.571876525 8.274684941 8.391743412 8.29617477 8.273398589 8.375560242 8.849975028 8.565783098 8.341242496 8.385481839 115280883 alkB Organic Remediation Other Hydrocarbons Burkholderia cepacia AMMD superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 8.308999024 8.51211097 8.498058981 8.486975727 8.366877839 8.109688491 8.579888618 8.381211795 8.451315651 8.298353676 8.444056988 27349177 pcaG Organic Remediation Aromatics Other aromatics Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.98394878 8.919257492 8.813336592 8.270056718 8.13408238 8.226484536 8.223765756 8.076538443 8.294847003 8.223635523 8.529571828 77458554 Catechol Organic Remediation Aromatics Other aromatics Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.245311391 8.290252834 7.808097052 7.951266097 8.021653564 6.93385656 8.230340985 7.617157146 7.599425776 7.714387904 51338936 phtA Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 9.291043302 9.385223714 9.539493263 9.187146405 8.959787323 8.806070955 8.701563052 9.016152603 8.661891571 8.980782261 8.904940488 9.33665615 150014820 rubisco Carbon cycling Carbon fixation uncultured gamma proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.728106705 7.598194759 7.586635981 7.349524311 7.659734737 7.890742781 7.82884719 7.871986117 7.939510195 219678873 mauAB Organic Remediation Herbicides related compound gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.866384375 8.572299017 8.296902234 8.779145796 8.765554632 8.478302913 8.9058429 8.474035535 8.719202321 8.760723355 8.503060203 118702832 Catechol Organic Remediation Aromatics Other aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.243901162 9.125695902 8.540225127 8.152327233 8.981725651 9.117608563 9.240340205 8.866097705 9.064862531 8.944563092 41397187 pcaG Organic Remediation Aromatics Other aromatics Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 8.967924182 8.923875038 8.648680315 8.855502112 8.92011761 8.992798864 9.017646053 8.931616418 8.996539643 8.619641126 9.162894212 8.693507842 170087268 grpE Stress Heat shock Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 8.829555188 8.796710929 8.862838956 8.306920211 8.237140353 8.325946564 8.276984548 8.24942933 8.46956116 8.157145292 8.222130177 8.394604447 170017888 ppx Phosphorus Phosphorus utilization Leuconostoc citreum KM20 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc citreum; 7.978681183 8.171250889 154688000 cydA Stress Oxygen limitation Bacillus amyloliquefaciens FZB42 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 7.165306975 7.490815547 7.767903601 7.943845064 7.619057256 7.833595664 7.800674697 7.939729602 7.578297681 257811892 srt virulence surface protein Enterococcus casseliflavus EC20 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus casseliflavus; 8.331809433 8.274521914 8.72924187 8.047449693 8.022882125 7.859243741 7.688525971 7.841005354 8.136635254 8.049665961 7.963624678 8.079088434 15602572 alkK Organic Remediation Others Pasteurella multocida subsp. multocida str. Pm70 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Pasteurella;species:Pasteurella multocida; 8.357201315 8.223479077 8.489069812 7.822229849 7.499364754 7.347563896 7.367385348 7.618921968 16081590 heat_shock_protein Bioleaching other category Thermoplasma acidophilum DSM 1728;Thermoplasma acidophilum 8.863250018 8.687598265 8.84764292 8.102875017 8.125909528 8.222433896 8.080291554 7.867825239 8.194761072 8.022542252 7.921074635 8.155198981 192286541 Mex Antibiotic resistance transporter Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.615118997 8.626286287 8.234192131 8.66496258 8.523997746 8.206320587 8.401740066 8.720606103 8.877948909 8.582299944 8.536547455 8.465691555 206600215 mycobacterium_LysB_lipase Bacteria phage LYSIS Mycobacterium phage Ramsey order:Caudovirales;family:Siphoviridae; 8.279776739 7.965533191 7.757998951 7.502237261 7.534073315 7.474521315 7.279560137 7.350736232 7.36389408 7.412031381 264677148 grpE Stress Heat shock Comamonas testosteroni CNB-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.544354908 8.801003488 8.482489563 8.925435058 8.514186756 8.414495334 8.703975414 8.584808114 8.694039184 8.608200098 8.623853104 8.428234297 167777078 ahpF Stress Oxygen stress Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira biflexa; 8.451585924 8.044329358 8.085275823 7.241439137 7.094148519 7.136015505 7.137708706 6.890668004 7.332119879 148846553 sigma_24 Stress Sigma factors Planctomyces maris DSM 8797 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces maris; 9.282286892 9.051026529 9.292737014 8.665731599 8.43170775 8.201195912 8.147968126 8.098743777 8.833071118 8.019258281 8.259146354 8.714839851 146409792 oxyR Stress Oxygen stress Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 9.035072652 9.091151564 9.259296963 8.511493221 8.413239476 8.554968934 8.369609374 8.460622451 8.631003028 8.710869482 8.832059653 8.74560027 116181846 nagG Organic Remediation Aromatics Aromatic carboxylic acid Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 8.21205048 8.541013021 8.772885488 8.349988955 7.771971757 7.739320431 7.868284581 7.509913836 8.055259985 7.876983729 8.110409986 116624723 xylanase Carbon cycling Carbon degradation Hemicellulose Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 8.945365377 9.002430402 9.184152849 8.714631589 8.548546197 8.608642133 8.623765718 8.569679423 8.707109302 8.444566096 8.55270099 8.761641014 116698610 sigma_32 Stress Sigma factors Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 8.645167452 8.634545891 8.409616091 8.116664144 8.037489521 7.946523754 7.841499553 8.064511232 7.877398597 8.140892221 7.926819807 8.209974757 196184346 MFS_antibiotic Antibiotic resistance transporter Brevundimonas sp. BAL3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas; 8.86404291 9.173357628 8.666452062 8.353708021 8.836695825 8.971211306 9.306546723 8.309622305 9.202239817 8.534421748 8.572504843 8.538040981 21224834 narI Stress Oxygen limitation Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.805504383 8.361875122 8.249521428 8.582548694 8.374345511 8.242232226 8.806199367 8.724026076 8.430467138 8.461026414 8.290677207 8.32076647 186685740 cadBD Metal Resistance Cadmium Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 8.511573881 8.461793892 8.633748994 8.177149769 8.390901245 8.30913881 7.062996427 7.669102205 7.714815247 8.151734078 90337312 nreB Metal Resistance Nickel Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 7.813260054 7.658095277 7.682072873 8.107527588 8.201376357 8.009036167 7.944191479 7.703197486 4757094 mer Metal Resistance Mercury Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.593276303 8.250967531 8.27946121 8.604664609 8.369488337 8.003056928 8.144411034 8.671161489 8.564781267 8.240248712 8.18853417 8.507661474 226718105 iro virulence Azotobacter vinelandii DJ superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 8.749796662 8.871898291 8.977481558 9.249724373 9.091296475 8.67417564 9.034888195 9.122013535 8.812920759 8.874145691 8.784135784 8.690723048 29466066 norB Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.176229896 9.130061662 9.025860546 8.702256686 8.665473107 8.555512494 8.61526608 8.55904311 8.621927012 8.823736742 8.756954783 167945944 phoB Stress Phosphate limitation Endoriftia persephone 'Hot96_1+Hot96_2' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Endoriftia;species:Endoriftia persephone; 8.908628785 9.155700693 8.956527446 8.887488022 8.74260464 8.201280277 7.967707892 8.183441704 8.569514699 8.552630769 256743116 fnr Stress Oxygen stress Thiomonas intermedia K12 8.938876472 8.787776348 9.099214535 8.176724371 8.150881226 8.17445999 8.431074724 8.279076822 8.687406995 8.239374518 8.295655142 8.141966086 255297134 pstC Stress Phosphate limitation Corynebacterium tuberculostearicum SK141 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium tuberculostearicum; 7.395097141 7.288527614 7.691666642 8.178873047 7.710502239 7.664054596 7.98550135 7.84846781 219994958 sigma_24 Stress Sigma factors Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 8.34841625 8.596469405 8.577134704 7.697343233 7.872105028 8.246776803 8.10223596 8.001653536 8.201489638 8.036423476 7.799078273 7.724025536 110338015 CopA Metal Resistance Copper Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 8.740013152 9.0958068 8.955058791 8.761714492 8.794632799 8.680588864 8.856015865 9.219381391 8.877512156 9.412168472 9.499698448 9.41481619 145235659 hdnO Organic Remediation Aromatics Heterocyclic aromatics Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8.314322729 8.492905978 8.738739224 7.960683628 7.793513328 7.933757907 7.537951623 7.347003146 8.18223283 7.656966063 7.136441602 8.074579372 49474370 glnA Stress Nitrogen limitation Bartonella quintana str. Toulouse 8.915257961 8.82525249 9.02002008 8.490596445 8.382156226 8.527524156 8.444296487 7.975950919 8.478144834 8.055138944 8.126616385 8.570631393 95112323 fnr Stress Oxygen stress Pseudomonas entomophila L48 8.654350901 8.595470247 7.412338255 7.987419921 8.079564426 7.845660103 7.378915953 7.890124319 7.412523525 7.712653448 8.060282164 83972356 nosZ Nitrogen Denitrification uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 9.449248661 9.587770221 9.093329341 9.096076631 9.37945758 9.562718034 9.829712746 9.435928249 9.23967096 8.975852279 9.265810059 8.869713174 54399741 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira; 7.380478254 7.177314272 7.964213395 120611736 pimF Organic Remediation Aromatics Aromatic carboxylic acid Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 9.165891237 9.51659913 9.038327209 8.908433288 9.379521901 9.585833887 9.770634017 9.407495654 9.365292529 9.233337516 9.522926374 9.722006744 116662140 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 9.038411616 8.803371292 9.246350525 8.520564844 8.399767916 8.356342718 8.179693503 8.269651126 8.48360227 8.253767167 8.263156497 8.625461491 262259077 katE Stress Oxygen stress Acinetobacter calcoaceticus RUH2202 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter calcoaceticus; 7.319735217 7.248795578 149143286 glnA Stress Nitrogen limitation Roseovarius sp. TM1035 8.711928605 8.679083455 8.96689354 8.685719476 8.727630536 8.460384726 8.837784031 8.81794744 8.645510654 8.985470246 8.878672401 8.867494323 89350409 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 9.286396658 9.333054463 9.302906792 8.776938877 8.788650296 8.673451744 8.778942716 8.926559697 8.574666551 8.929345609 8.923985467 9.01374072 148501986 obgE Stress Radiation stress Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 9.402959421 9.585147114 9.568425737 9.463447714 9.406960284 9.265599123 9.423514499 9.878227714 9.538302695 9.918951592 9.876791107 9.678185367 189435053 ChrA Metal Resistance Chromium Bacteroides intestinalis DSM 17393 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides intestinalis; 8.871139576 8.734987463 8.979909924 8.050040161 8.275496717 7.780609043 7.688645761 8.082059715 7.913073664 8.35122732 99030569 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 9.438352186 9.497379344 9.674857016 8.518087064 8.184620306 8.67379709 8.928007518 8.665749036 8.761687596 8.841315461 8.825978001 9.022377404 159177701 sigma_70 Stress Sigma factors alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 8.768841739 8.315897486 8.44313842 8.714027482 8.649273639 8.621368642 8.357151898 8.657307142 8.430542769 8.493431665 8.774774912 8.07809622 169772315 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus oryzae RIB40 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus oryzae; 8.120093438 8.229022342 7.932005906 7.593169903 7.499832399 7.750468603 7.646803059 7.66972101 8.107740112 7.82044783 7.480512627 189194379 nagG Organic Remediation Aromatics Aromatic carboxylic acid Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 10.90945666 10.57947138 10.54667399 9.890853383 9.347850048 9.449513446 10.4887794 9.658726612 99644206 merP Metal Resistance Mercury Plasmid QKH54 7.739797925 7.927301549 7.41443793 7.652543669 7.452170219 7.649299161 8.042184404 7.573506584 160362805 nmoA Organic Remediation Aromatics Nitoaromatics Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.612725016 8.466233176 8.360243914 8.359335631 8.175528333 8.4551518 8.444842248 8.408036066 8.637736922 8.735237237 8.655786496 8.778678896 147886006 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 9.005551521 9.220383659 8.885702362 8.637960229 8.749856416 8.599580054 8.376610184 8.553672889 8.503573862 8.63712435 8.731887094 8.635817908 29832286 ara Carbon cycling Carbon degradation Hemicellulose Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 9.030905622 9.055714192 8.891767238 8.673751734 8.59090348 8.272730538 8.565820309 8.335913844 8.443914201 8.644324659 8.603877242 8.612111185 227501684 narH Stress Oxygen limitation Corynebacterium accolens ATCC 49725 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium accolens; 8.655217861 8.933492374 8.895938893 8.044279609 7.970968138 8.03426222 8.098885375 7.642505384 7.94984607 8.189238709 8.146089702 71906690 CopA Metal Resistance Copper Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 8.477385973 8.502482587 8.48788127 8.5066396 8.673932231 8.547820091 8.342177591 8.937367719 8.371284363 8.788849047 8.848919019 56909125 alkH Organic Remediation Other Hydrocarbons Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 8.112773307 8.401812978 8.137590615 8.160130566 8.136047476 8.044995802 8.097534301 8.199706452 7.94718283 8.141669555 8.248874022 7.751497084 269838062 arsM Metal Resistance Arsenic Sphaerobacter thermophilus DSM 20745 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 8.627449198 8.432760476 8.677145462 8.21786735 8.159593164 7.961721675 8.066163232 8.179845039 8.504142748 8.203066642 8.079630354 8.151984943 134100479 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 8.983666526 8.991284661 8.981223034 8.645986441 8.735828242 8.886518355 9.047080845 8.940680143 9.184681649 8.832863694 8.845511478 8.715759815 187929942 grpE Stress Heat shock Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.44887591 8.746238129 8.602640075 7.954689215 7.97091649 8.600879715 8.579888513 7.99723673 8.607863048 8.155418918 8.004816826 8.313449302 51856530 atzA Organic Remediation Herbicides related compound Symbiobacterium thermophilum IAM 14863 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVIII. Incertae Sedis;genus:Symbiobacterium;species:Symbiobacterium thermophilum; 9.240362837 8.975618451 8.834761693 8.775638913 8.760643218 8.605989095 8.310211478 8.441084796 8.50212473 8.490545099 8.591860276 50955094 hrcA Stress Heat shock Leifsonia xyli subsp. xyli str. CTCB07 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Leifsonia;species:Leifsonia xyli; 7.912523901 7.574198745 7.343514678 7.234051247 7.873649665 17548256 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia solanacearum GMI1000 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 9.10064571 9.11567089 9.148627169 8.663346104 8.555950361 8.660987372 8.949916678 8.513824477 8.9071752 8.702359711 8.637094176 8.689352438 118151833 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium superkingdom:Bacteria; 9.443662098 9.576395555 9.400813073 10.01353005 9.688082204 9.666444864 9.973227585 10.09680626 9.871291715 10.14216917 9.791727933 9.843108265 91790351 mdlD Organic Remediation Aromatics Other aromatics Polaromonas sp. JS666 9.155019106 9.059429701 9.068728229 8.876999966 9.216729951 9.28658483 9.242636511 9.225766928 9.217594654 9.229883901 9.29366224 9.252190327 83942035 hrcA Stress Heat shock Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 8.581403644 8.461279581 8.441938407 7.874671627 7.803380579 8.144858539 8.136497766 7.803781233 8.570443769 8.133433531 8.039843218 8.543144495 49530856 pimF Organic Remediation Aromatics Aromatic carboxylic acid Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 8.810027263 8.832150213 8.836789288 7.971600575 7.94528205 8.045256396 8.052801312 7.804344227 7.933299541 7.902883895 8.353485412 197757814 pcpB Organic Remediation Herbicides related compound Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.378496451 8.517657432 8.590631972 8.77017089 8.706734395 8.623577775 8.727854539 8.860756723 8.881623535 8.998143632 8.738959029 8.685472384 238750114 obgE Stress Radiation stress Yersinia rohdei ATCC 43380 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia rohdei; 8.232452312 8.02236337 8.175787643 7.255241967 7.27089589 7.62883486 8.148156237 7.313376964 8.177781028 7.959336148 7.711040238 7.768217802 240171708 B_lactamase_C Antibiotic resistance Beta-lactamases Mycobacterium kansasii ATCC 12478 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 9.347097608 9.425901098 9.401527075 8.872642121 9.035848903 8.878195483 8.891435881 9.078062433 9.042837844 9.250894618 9.307306261 9.287741413 229567815 pstA Stress Phosphate limitation Beutenbergia cavernae DSM 12333 9.681637021 9.44847718 9.392452586 9.0797022 8.792525528 8.768156764 9.069305008 9.218630241 9.065373638 9.118101598 9.077895359 118170179 bphC Organic Remediation Aromatics Polycyclic aromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 9.245650941 8.802437022 8.858385859 8.341644016 8.41104345 8.63009888 8.382705233 8.495954851 8.373006962 8.639809212 8.904505498 8.483217165 206559531 nahF Organic Remediation Aromatics Polycyclic aromatics Burkholderia cenocepacia J2315 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 8.768264531 8.544773141 8.459937357 7.645184662 8.088537988 7.970803454 8.016478864 7.41435839 8.316234659 7.474331206 7.577719447 7.775014246 115520443 SMR_antibiotics Antibiotic resistance transporter Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.443824738 8.000255304 8.43686479 8.329874451 8.068201269 7.921122159 8.075549941 8.289369423 8.302202991 8.270602808 8.322018083 8.166399946 170122677 CueO Metal Resistance Copper Escherichia albertii TW07627 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 9.166530752 9.317448608 9.394626456 8.837459043 8.906294937 8.822660821 8.724532268 8.904350135 8.611286064 9.055753857 9.03009406 9.104595891 21224766 CopA Metal Resistance Copper Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.16052387 8.272539112 8.383727465 8.305427356 8.27577092 7.947745237 8.013383874 8.337129791 8.476730914 8.263144015 8.166411951 8.467563067 37924788 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.646521233 8.416035565 8.517995966 8.086895792 8.084452443 7.880173904 8.370678526 7.946528322 8.397025504 7.819033498 8.060135886 7.942275356 225194119 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.830771521 8.334002653 8.362721233 7.772553855 7.800901927 7.967609873 7.992597711 7.61176541 8.044956459 7.68697139 7.698610298 7.469616686 226831872 obgE Stress Radiation stress Actinomyces coleocanis DSM 15436 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces coleocanis; 8.524558464 8.127142105 8.320021265 8.126400806 7.809572043 8.212106032 8.240952358 8.303531111 8.406568012 8.484557755 7.778155562 2935031 catB Organic Remediation Aromatics BTEX and related aromatics Rhodococcus opacus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 9.107573476 8.285042286 8.452130348 8.363963235 8.003196074 7.97081213 8.555069024 8.33532319 8.377102504 8.435663421 8.353140313 90954605 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.452378093 8.111637023 8.515635762 7.892216945 7.721757227 7.935380831 7.951503133 7.690476899 7.939435941 7.755300901 7.669087046 7.899369007 222147673 ppx Phosphorus Phosphorus utilization Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 8.023626141 8.079523247 7.919870012 7.708268126 7.777125952 7.887347992 7.636430973 7.385118056 7.583274759 7.539599949 7.549570483 150396971 proV Stress Osmotic stress Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 8.659794716 8.798507678 8.658419001 8.247795494 8.185312733 8.280775198 8.433567777 8.334467856 8.016601301 8.197446228 8.112744584 8.356592405 257897914 endochitinase Carbon cycling Carbon degradation Chitin Enterococcus faecium Com15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus faecium; 8.589640427 9.140918725 9.179386563 8.441459725 8.441239084 8.375832018 8.384127785 8.144779074 8.236737178 8.224172415 8.289738985 8.711504378 238711151 pap virulence adhesin Yersinia rohdei ATCC 43380 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia rohdei; 8.753350546 8.74768257 8.761261996 8.093111942 8.556158066 8.55064963 8.746478922 7.74801762 9.267364211 8.096756307 8.077591201 8.16216642 219852472 dsrA Sulphur sulfite reductase Candidatus Methanosphaerula palustris E1-9c superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;genus:Methanosphaerula;species:Methanosphaerula palustris; 9.163920625 9.004055279 9.292558473 8.604240336 8.619273231 8.575959655 8.4559699 8.600335184 8.566629988 8.462192759 8.464437103 8.771208966 116623484 xylanase Carbon cycling Carbon degradation Hemicellulose Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 8.680158819 8.453640858 8.46493899 8.151525093 8.474761642 8.638386006 8.7690247 8.356001765 8.724728227 8.684295534 8.47573168 8.567842323 210630874 cda Carbon cycling Carbon degradation Starch Collinsella stercoris DSM 13279 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella stercoris; 8.525318426 8.695150869 8.816738739 8.19419233 8.142469993 8.080116628 7.88457734 7.795440849 8.161191134 7.951741642 7.909183936 8.334340915 32170710 nagI Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces sp. WA46 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.704394621 8.611824028 7.909772895 8.260716313 8.301530574 8.643148652 8.307727991 8.640472095 8.375928595 8.521851198 8.383216273 148724467 helicase_family_4 Bacteria phage REPLICATION Cyanophage Syn5 8.243776604 7.905078324 7.515650182 7.559263069 7.53924821 7.34434569 7.326891249 7.792403442 7.23020545 7.411891221 7.57408501 118706581 vanA Carbon cycling Carbon degradation Others Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.697443163 8.756263016 8.601033146 9.374251928 9.190521007 8.752210184 9.166323009 9.169466111 8.60027014 8.990151219 8.793298414 8.53177561 218551058 tutFDG Organic Remediation Aromatics BTEX and related aromatics Escherichia fergusonii ATCC 35469 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia fergusonii; 7.973459058 8.033877833 7.101942046 6.899746501 7.667532772 7.467554566 7.150193761 7.780300431 7.367397069 7.436879849 7.877907754 84503002 linB Organic Remediation Pesticides related compound Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 8.746487506 8.868123697 8.988391317 8.399604909 8.395793338 8.295289031 8.441880708 8.425411768 8.254788503 8.422448243 8.353591803 8.594713173 251841079 sigma_24 Stress Sigma factors Bacteroides sp. 1_1_6 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 8.117280857 8.131634938 8.070472681 8.293952036 8.684952049 8.514115569 9.082976774 9.091973897 8.562787728 219965738 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.769684802 7.557065612 7.261978772 7.268854232 7.071836807 7.571249926 7.237036837 7.433208961 7.224036007 261491825 xylA Carbon cycling Carbon degradation Hemicellulose Mannheimia haemolytica serotype A2 str. BOVINE superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Mannheimia;species:Mannheimia haemolytica; 8.268156496 8.213431904 7.373401185 7.6252681 7.43094129 7.551361456 7.599358916 8.15599917 157372856 nagI Organic Remediation Aromatics Aromatic carboxylic acid Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 8.647429663 8.714936313 8.700299331 7.935593528 7.938029932 8.006906475 7.556404579 7.409973608 7.798946193 7.877063927 7.753300762 241994935 toxin virulence toxin Aggregatibacter actinomycetemcomitans 7.391325787 7.684970716 7.388660674 7.879306894 7.051451861 7.393390528 7.024290115 7.790295469 222480466 pstB Stress Phosphate limitation Halorubrum lacusprofundi ATCC 49239 9.592693969 9.092957751 8.99988105 9.499379209 9.345347239 9.151309671 9.353900917 9.268716281 9.021318941 9.221286324 9.389396711 9.125350389 255010034 ara Carbon cycling Carbon degradation Hemicellulose Bacteroides fragilis 3_1_12 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 9.179659269 9.215707092 9.393040304 8.384634897 8.260643613 8.39062023 8.162452526 7.919191585 8.340395505 8.377637443 8.846233988 126648239 fnr Stress Oxygen stress Algoriphagus sp. PR1 7.080361723 6.801367329 229361896 iro virulence Pseudomonas fluorescens SBW25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.970867842 8.743246001 8.822509052 8.729040194 8.666155734 8.505114002 8.437209649 8.59405225 8.4802479 8.677085925 8.773523708 8.708991055 18389591 norB Nitrogen Denitrification Roseobacter denitrificans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 9.273727346 9.449658599 9.192031119 8.682009019 8.463504953 8.627433385 8.615413434 8.3651753 8.870966887 8.575691736 8.656454644 8.808188322 106887012 xylanase Carbon cycling Carbon degradation Hemicellulose Clostridium phytofermentans ISDg superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium phytofermentans; 8.195948742 8.19348726 8.610080094 7.657167618 7.395969581 7.655910441 7.35292076 7.347242325 7.497633194 7.476463817 7.743652741 257444370 amyA Carbon cycling Carbon degradation Starch Treponema vincentii ATCC 35580 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema vincentii; 8.369997976 8.396101892 8.618762751 8.416697151 8.157225192 8.11688635 7.684737999 7.813263651 8.147954054 7.623828256 7.800580691 8.066345975 38488532 bphC Organic Remediation Aromatics Polycyclic aromatics Pseudomonas graminis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 9.522552162 9.550326024 9.610983277 8.749387099 8.50511004 8.819935313 8.867046799 8.501915265 8.971925052 8.550087014 8.760525355 8.694675146 255303784 ppk Phosphorus Phosphorus utilization Acinetobacter radioresistens SK82 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter radioresistens; 9.060060739 9.106046931 9.138839685 8.466188334 8.027930777 8.568951439 8.420630207 8.157192511 8.41424115 8.54206078 8.698617791 8.79717781 160917530 narG Nitrogen Denitrification uncultured bacterium 8.350820274 8.073065438 8.243411367 7.426979192 7.477962558 7.527897367 7.579831241 7.06411431 7.682269472 7.161654774 7.151774606 7.077096618 149120469 pheA Organic Remediation Aromatics Other aromatics Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 8.220669151 8.344946504 8.594403824 7.897380577 7.994927056 7.993968095 8.506299977 8.000204169 8.371892716 8.069566447 8.110691726 8.136116683 163669885 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 10.51869177 10.5091655 10.26342045 9.668302725 10.11372476 10.24732308 10.71237392 9.509657836 10.78415885 10.05935543 9.931684532 10.17585218 214043870 alkK Organic Remediation Others Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 9.688933823 9.997752899 9.805642419 9.075103008 9.238917494 9.32097367 9.490156897 9.018877424 9.581344555 9.114339885 9.069664784 9.264617099 87290254 mer Metal Resistance Mercury Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 8.689757669 8.169452818 8.44978661 8.088940385 8.824343759 8.168507978 8.328181454 8.239097701 8.608100183 84687263 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.312183032 8.342149306 8.476149364 8.110375389 7.738498546 7.726224729 7.814918259 7.893773009 8.057384504 7.669920822 7.551249364 8.053156018 126637200 glnA Stress Nitrogen limitation Shewanella loihica PV-4 8.591071412 8.751746889 7.833098199 8.48372808 8.805700049 8.280999566 8.610885931 8.382204592 8.169916915 8.307408933 229543285 sigma_24 Stress Sigma factors Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 7.243271881 7.509984908 7.301806118 6.823077885 7.654883473 7.061060349 7.055611402 7.552708266 76876307 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudoalteromonas haloplanktis TAC125 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas haloplanktis; 8.296741334 8.236821501 8.158579169 7.523344502 7.328143118 7.193677207 7.186726029 7.150016444 7.620373974 6.889696531 7.125948191 254396854 ABC_antibiotic_transporter Antibiotic resistance transporter Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 8.642280281 8.70650671 8.394426529 8.153369327 8.154493362 8.483580174 220907409 CopA Metal Resistance Copper Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.730952615 8.806543255 8.852559958 8.298740712 8.059288435 8.175250801 7.733703378 7.660863753 8.434231272 7.803325035 7.823585185 8.112489991 269955723 AceA Carbon cycling Carbon degradation others Xylanimonas cellulosilytica DSM 15894 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Xylanimonas;species:Xylanimonas cellulosilytica; 9.113118743 8.967937757 8.964048229 9.344786252 9.327266076 9.034622711 8.850370305 9.361380715 8.99062063 9.158888592 9.100018574 9.390130533 160940247 nitA Organic Remediation Aromatics Other aromatics Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 9.623495555 9.692135046 8.812459973 8.672074765 8.810354868 9.016798177 8.435337956 8.858855835 8.716814376 8.576631629 8.841090501 206590422 bphA Organic Remediation Aromatics Polycyclic aromatics Ralstonia solanacearum 7.94249456 8.088214529 8.090009405 8.19056981 8.16626262 8.254644945 8.579415653 8.50113106 8.415431741 8.073479571 8.510670165 261867710 MATE_antibiotic Antibiotic resistance transporter Aggregatibacter actinomycetemcomitans D11S-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Aggregatibacter;species:Aggregatibacter actinomycetemcomitans; 9.176544372 8.901537627 8.909733049 8.676160569 8.870281487 8.841312284 8.617215985 8.84909352 8.372445561 8.924243563 9.064587965 9.081264887 91695141 gyrB other category gyrB Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 8.885385777 8.889410892 9.073478614 8.247401185 8.137346115 8.202617768 8.105403602 7.908134829 8.114649369 8.179273547 8.426909171 222138054 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 10.26481625 10.20683515 10.40916962 9.669220975 9.808017017 9.690505656 9.817734091 10.01655506 10.08445863 10.2761528 10.13238779 10.10411773 152970670 mhpB Organic Remediation Aromatics Aromatic carboxylic acid Klebsiella pneumoniae subsp. pneumoniae MGH 78578 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 10.60192452 10.6000028 10.52329625 10.21975583 10.12326706 10.3083049 10.67150916 10.19272536 10.85582554 10.36785169 10.44878527 10.35137117 218169995 pilin virulence pilin Cyanothece sp. PCC 7424 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 9.109780429 8.973501522 9.07702902 8.280818693 8.49084036 8.257300144 8.424444272 8.524118735 8.315464128 8.671934829 8.545021578 8.393558052 218888272 hydrogenase Energy process Energy process Desulfovibrio vulgaris str. 'Miyazaki F' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 8.799052806 9.02789964 8.886987347 9.090050584 9.392493312 9.299538163 9.280608365 9.363569639 9.10403374 9.184530049 9.437632553 87200161 ZntA Metal Resistance Zinc Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 8.523962639 8.251143871 8.455156346 8.56406636 7.98020437 7.969552981 8.170148503 8.479422121 8.386154606 8.302174361 8.521873347 7.962222976 3757737 nirS Nitrogen Denitrification Azospirillum brasilense 8.650619925 8.454468512 8.734373678 8.293863747 8.193274844 8.190050461 8.040428709 8.291674928 8.181096268 8.149981046 8.304409206 8.299649616 163740368 CopA Metal Resistance Copper Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 9.391640349 9.418593931 9.480479307 8.741507119 8.947306562 8.679084683 8.536946594 8.752907258 8.63307714 8.653140514 8.980581747 83724317 tfdA Organic Remediation Aromatics Chlorinated aromatics Ralstonia solanacearum UW551 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 8.14265678 8.08002551 8.126300997 7.872386901 7.741719172 8.076822193 7.365946959 7.985906835 7.994421569 7.611089227 259910306 pstB Stress Phosphate limitation Erwinia pyrifoliae Ep1/96 8.482655078 8.557365936 8.66304269 7.770492216 7.718921713 7.766588049 7.786218308 7.282759232 8.062729688 7.351791445 7.514176405 7.575767396 111064186 glnA Stress Nitrogen limitation Phaeosphaeria nodorum SN15 8.318665356 8.355533641 8.29504409 8.232464929 7.896833152 8.22749603 8.241199062 8.199041193 8.099376086 7.930401603 7.890489668 156857781 APS_AprA Sulphur adenylylsulfate reductase uncultured bacterium 8.574090953 8.253415817 8.685790038 8.831104988 8.452046434 8.145049553 8.253286649 8.616089754 8.47713711 8.540867676 8.556677003 8.126507727 147678008 pstC Stress Phosphate limitation Pelotomaculum thermopropionicum SI superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Pelotomaculum;species:Pelotomaculum thermopropionicum; 8.297557919 8.340973443 8.442107408 7.588816479 7.567296806 7.571489303 7.91570052 7.225051003 8.331380736 7.531927488 7.590221263 7.61595284 118504015 CopA Metal Resistance Copper Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 8.758735306 8.438829394 8.524904233 8.174566426 8.055644423 8.166727893 7.768993784 7.788509441 8.24183144 7.979503727 7.986965859 8.00765805 206679033 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.975314615 9.056050142 10.04168194 10.00636006 10.15458173 116181212 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 8.950866215 8.64009433 9.018806936 8.272884577 8.191904199 7.954933931 7.929612614 8.111300079 8.098427134 8.027267258 7.861662477 8.255755799 162072842 dsrB Sulphur sulfite reductase Thiocystis gelatinosa superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocystis; 8.250231781 7.956305868 7.762171109 7.771486078 8.250521955 7.696867585 7.900752566 7.997253222 7.791647924 8.322634611 7.748656765 89473922 nifH Nitrogen Nitrogen fixation uncultured cyanobacterium superkingdom:Bacteria;phylum:Cyanobacteria; 8.55736528 8.272310754 8.542568296 7.840787111 7.658753379 7.671567123 7.467577777 7.336678624 7.798348552 7.39582268 7.301094681 7.801807212 12667618 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium UMTRAdsr610-29 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 8.681908134 8.520671692 8.340265487 8.317854693 8.192231726 7.893227114 8.06833673 8.313776105 8.003443641 7.849093562 8.200007548 183175614 CadA Metal Resistance Cadmium Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 8.409757438 8.198731532 8.440505442 7.792314948 8.011573145 7.920836049 7.531433831 7.912031743 7.959336713 7.936720238 7.723844112 8.014929828 15920951 peroxiredoxin Bioleaching Metal Resistance Sulfolobus tokodaii str. 7 7.278706624 7.181119583 7.138484668 7.157035142 2627153 xylG Organic Remediation Aromatics Aromatic carboxylic acid Acinetobacter sp. YAA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 8.397711816 8.363121284 8.144835418 8.744760497 8.561037884 8.47378293 8.04550439 8.853073271 8.288420784 8.505982933 8.353216953 8.589106383 47573395 Xamo Organic Remediation Other Hydrocarbons Rubrivivax gelatinosus PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 7.884362824 7.81188339 7.637225256 7.659973 7.61022392 7.509109558 7.425622069 227502902 sigma_24 Stress Sigma factors Corynebacterium accolens ATCC 49725 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium accolens; 8.595206144 8.260969412 8.592615302 7.560273908 8.03226166 8.08979382 7.592032336 7.521519416 7.75597508 7.717238101 8.26099388 8.065911543 86357847 pcc Carbon cycling Carbon fixation Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 9.380067323 9.567008792 9.729649738 9.443466974 9.61054521 9.562977021 9.477538673 9.652742017 9.628929192 9.762881536 9.735452627 9.191477794 149914852 pstC Stress Phosphate limitation Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 9.163204958 8.670959127 8.478158581 9.10366342 8.974832027 8.67257617 9.219966977 9.087185601 8.862271627 9.051560708 9.224755273 8.714263808 94313984 tftH Organic Remediation Aromatics Chlorinated aromatics Ralstonia metallidurans CH34 8.550467964 8.637473761 8.572587026 8.679215629 8.651093118 8.338678158 8.556245221 8.563585463 8.684387837 8.461804979 8.205456537 8.316569379 198275447 katA Stress Oxygen stress Bacteroides plebeius DSM 17135 8.564015708 8.284692841 8.495847291 7.879252147 7.857607755 7.996272719 7.71981781 8.238312801 8.019198139 8.082713634 8.12121837 8.189702333 120556930 gyrB other category gyrB Shewanella sp. W3-18-1 8.210066624 8.079334846 7.525439404 7.949435258 8.293381266 8.124000867 8.38849023 8.439838008 8.438526287 8.578757706 8.327920221 156189683 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 8.969793869 8.942205643 8.603692283 8.875509368 8.310126959 8.141234854 8.754719483 8.947592323 8.564724797 8.482758224 8.497607258 113869666 silC Metal Resistance Silver Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 9.155035791 9.059963847 9.172024988 9.029238281 8.875459564 8.719906551 8.835848802 9.061491304 9.029621976 8.858907126 8.821372255 9.052661561 209401716 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.13192054 8.447618002 8.771952399 8.74185869 8.526263241 8.175200055 8.235468245 8.885199449 8.304632861 8.709804812 8.567250333 8.503781847 217506410 fnr Stress Oxygen stress Thauera sp. MZ1T 8.966202191 8.886776414 8.373436655 8.648792897 8.799364024 8.66686825 8.936698272 8.723946033 8.616347127 8.678879514 8.965453815 8.594635091 46115524 nagI Organic Remediation Aromatics Aromatic carboxylic acid Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 9.069858262 8.901275356 9.160689308 9.383425348 9.418857232 9.095564142 9.137340962 9.763977884 8.953509828 9.305137655 9.138470749 9.44342643 91977807 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.708204588 8.807862798 8.416828852 8.934814897 8.820529111 8.743343484 8.874266323 9.22511367 8.987460358 9.30779673 9.042085093 8.959282995 218219429 ppx Phosphorus Phosphorus utilization Mitsuokella multacida DSM 20544 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Mitsuokella;species:Mitsuokella multacida; 9.964832074 9.852842455 10.01731632 9.537803197 9.655803391 9.169866401 9.566880212 10.12655087 9.973119582 9.783583099 9.809144304 9.93451002 91710691 nmoA Organic Remediation Aromatics Nitoaromatics Methylobacillus flagellatus KT superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 9.220838397 9.266307157 9.219461504 8.964881336 8.882590759 8.770425138 8.763516918 8.897407252 8.841133953 9.005201267 8.932228901 9.109827174 160362149 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 10.71901374 10.66268817 10.72921101 9.834613218 10.00687051 10.21742061 10.65546435 10.27450609 10.75303852 10.44824789 10.54910001 10.3353516 224816793 fnr Stress Oxygen stress Thioalkalivibrio sp. K90mix 8.641520548 8.368474637 8.629813401 7.677579325 7.630378456 7.751051742 7.485395807 7.58417333 7.681585499 7.567883841 7.524203693 7.773814276 32451212 Tet Antibiotic resistance other Bacteroides coprosuis superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 8.338279461 8.213065634 7.366469726 7.29710569 7.187641156 6.82893526 7.433743536 7.090162195 7.609205817 29652626 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.895071447 9.137730632 9.423568686 8.661082671 8.987644497 8.539377828 8.772751123 8.626553019 8.714086111 8.511010232 8.556345675 29828984 gyrB other category gyrB Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 9.095686105 8.766741321 9.162988373 8.658972995 8.505302028 8.542228532 8.588872778 8.479799084 8.68327842 8.590788186 8.712110997 8.767389936 220709906 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 9.428951815 9.42283414 9.549439374 8.884190962 9.187444998 8.724549446 8.786425864 8.524016161 8.801938333 8.944458586 9.184494655 156710794 CopA Metal Resistance Copper Hydrogenobaculum sp. Y04AAS1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenobaculum; 7.479057226 7.86023922 7.146368367 7.463278529 2633393 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 9.181016652 9.17319285 9.168405519 8.58359417 8.461850674 8.545857417 8.272005519 8.030793538 8.535682987 8.181090102 8.136707405 8.69161769 116013326 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.203075854 8.738323988 8.493936667 8.717093417 8.529522657 8.324225065 8.423216864 8.841584432 8.83558723 8.745105857 8.294329557 8.572284121 56679458 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 8.26049043 8.139385702 7.441898525 7.39003058 7.483116109 7.320483949 6.774582255 8.076763649 7.306381069 7.291584634 7.501557835 86747333 MFS_antibiotic Antibiotic resistance transporter Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.349948013 8.326214483 8.443866599 8.035597838 7.930414538 8.022114119 8.273393985 8.226024712 8.236901863 8.353306091 8.146688771 160899138 nagG Organic Remediation Aromatics Aromatic carboxylic acid Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.868342528 8.841524571 9.149758435 9.051674738 8.875335485 8.612364039 9.029583218 9.393574066 8.924727324 9.124722637 8.859636753 9.005282496 17428103 phdA Organic Remediation Aromatics Polycyclic aromatics Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 8.797793259 8.79488024 8.417357706 7.813376988 7.487471886 7.966166389 8.317383299 7.733302192 8.294577465 8.314034006 8.532242759 8.280745771 161391017 CopA Metal Resistance Copper Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 9.829604934 9.699515503 9.954687756 9.856972393 9.686473803 9.368048805 9.751429524 10.01399743 9.762656335 9.746527265 9.505119637 9.852555568 60476255 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 8.179483895 8.077354309 8.256761741 7.315196946 7.255773925 7.654811086 7.528224482 7.454353824 7.821424872 7.631749875 7.121593337 7.636585126 116624095 exaA Organic Remediation Chlorinated solvents Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 9.96514762 10.103135 9.836506932 9.859443129 9.855103773 9.854291696 9.975281797 10.04419331 10.01372342 10.20362705 10.03712623 10.01095088 221070130 Catechol Organic Remediation Aromatics Other aromatics Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.918196687 8.540194574 8.836219822 8.888928655 9.015744451 9.005400657 8.672015259 9.312858279 8.582515818 9.061677012 8.868057553 9.199907097 10175887 amyX Carbon cycling Carbon degradation Starch Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 8.881137028 8.887541823 8.21816025 8.608833091 8.722489034 9.097080542 8.338780275 9.104804982 8.486059619 8.464924921 8.539771056 48153 mer Metal Resistance Mercury Acidithiobacillus ferrooxidans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus; 7.861522532 8.000685742 7.374152255 7.332478297 7.571264785 6.911725346 6.504970772 7.569189194 7.066879546 6.980537983 7.62817396 104781779 ZntA Metal Resistance Zinc Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 8.88687075 8.774638311 8.862622903 8.717213507 8.691110502 8.547979107 8.379178314 8.636703198 8.736896581 8.562399822 8.447161694 8.604463699 251846639 katE Stress Oxygen stress Paenibacillus sp. oral taxon 786 str. D14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 8.569837846 8.409860146 8.578958864 7.967294909 7.690229256 7.737150504 7.43608989 7.411135024 8.133200853 7.545056117 7.653258418 8.038467429 119897238 nasA Nitrogen Assimilatory N reduction Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8.560082579 8.433561502 8.608929225 8.773067125 9.411143407 8.906996984 8.497728982 8.929186904 8.6374519 9.034218682 8.871612664 209499411 sigma_24 Stress Sigma factors Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.796313177 8.700202271 8.374379178 8.360197654 8.660910661 8.530556291 8.609121663 8.563747197 8.643269211 8.409563175 8.511370662 8.464363675 21224392 proV Stress Osmotic stress Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.985571287 9.139309634 9.092174149 8.534896442 8.593009247 8.57839418 8.76708664 8.392934486 8.85444299 8.625861356 8.624091096 8.745373354 145702252 ABC_transporter_I Bioleaching other category Metallosphaera sedula DSM 5348 8.47589776 8.377683352 8.720784685 7.877750164 7.63775727 7.846147712 7.769306706 7.569603695 7.790409477 7.401749528 7.702668633 8.087571655 68345513 xylL Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.729673428 9.163362484 8.754459361 9.185796782 9.318081472 8.901283566 9.387849672 9.330940893 8.988528013 9.271561491 8.880885249 8.666322438 115360323 xylC Organic Remediation Aromatics BTEX and related aromatics Burkholderia cepacia AMMD 8.960131477 8.774920316 8.798602922 8.38218681 8.187804975 8.141269214 8.459031724 8.017696037 8.63248326 8.33956195 8.375201282 8.148574663 118470157 LMO Carbon cycling Carbon degradation Others Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.812992023 9.183552318 8.938220913 8.523420017 9.19434385 9.425558536 9.516104209 9.62364621 9.138824932 9.55717827 9.519584366 9.421017417 163740735 nhh Organic Remediation Aromatics Nitoaromatics Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 11.18760748 11.24937527 11.29022418 11.06082937 10.98370245 10.88006177 10.93281073 10.8475971 11.44296727 11.22279932 11.05761326 11.14701234 215450203 BpH Organic Remediation Aromatics Aromatic carboxylic acid Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 8.892343968 9.056482817 8.887805914 9.350705938 9.177167524 8.96614296 9.613820438 9.463926666 9.129783364 9.567432167 9.691818838 9.03737187 93354645 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 9.154130004 9.010210752 8.90372045 8.523764425 8.485149974 8.315116689 8.706703316 8.359128819 8.98858917 8.478833415 8.291924016 8.401336324 194291402 Catechol Organic Remediation Aromatics Other aromatics Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 9.097672032 8.898078922 8.787238444 9.05033983 8.889700185 8.771931291 9.120534627 9.203082453 9.071703457 9.06208612 9.018657444 9.0406194 4633563 nosZ Nitrogen Denitrification uncultured bacterium 696F superkingdom:Bacteria; 8.645945231 8.458109245 8.435567733 7.937196944 8.431565618 8.672725121 8.702250931 8.44729544 8.257169414 8.43102441 8.231259594 146275645 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 8.80172754 9.0933262 8.665449686 8.272716717 8.685865349 8.741846619 8.418738635 8.489648571 8.853018538 8.374654347 8.778803567 8.488659026 116068675 sigma_70 Stress Sigma factors Synechococcus sp. RS9916 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.328372708 8.71228815 8.631176059 8.292317734 8.315387337 8.431783309 8.440743416 8.270948253 8.643764799 8.127735529 8.089644777 8.132454785 109660077 ureC Nitrogen Ammonification unidentified bacterial contaminant superkingdom:Bacteria; 8.208616473 8.243337716 8.292827264 8.363201105 8.387312089 7.997009838 8.070997408 8.414290313 8.297750143 8.332533125 8.203195782 7.943238065 218645705 phytase Phosphorus Phosphorus utilization Buttiauxella agrestis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Buttiauxella; 8.401237896 8.750741704 8.464286886 7.698299724 8.080150405 8.338929295 8.395277809 8.618899674 254487807 ppk Phosphorus Phosphorus utilization Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.899895073 9.066351476 8.595159556 8.323434432 8.624563525 9.05464125 9.303080136 9.036101353 9.080663083 8.372962951 8.673810507 8.651381911 167645302 silC Metal Resistance Silver Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.320195264 8.506513081 8.599955339 7.565122498 7.672694061 7.662932417 7.363075768 7.004554774 7.945430714 7.24492583 7.241291337 7.646553026 145240525 pheA Organic Remediation Aromatics Other aromatics Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8.560066563 8.23922895 8.123934305 8.457740659 8.509170192 8.473056035 8.497726908 8.283582444 8.126590469 240102266 ABC_antibiotic_transporter Antibiotic resistance transporter Thermococcus gammatolerans EJ3 8.296042208 8.266550227 7.680256304 7.708786366 7.318428182 7.51997709 7.673373849 7.359749791 7.770162988 7.405109413 238719299 B_lactamase_C Antibiotic resistance Beta-lactamases Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 7.39511318 7.81764496 7.316897265 7.761742899 7.862450844 7.872241289 145701469 NAD_dependent_epimerase_dehydratase_family_protein_EPS Bioleaching EPS Metallosphaera sedula DSM 5348 9.55982849 9.594128887 9.710025899 9.019730423 8.928359726 8.850534364 8.666624644 8.83810779 8.542753781 9.020892513 9.033039676 9.212939471 27379301 pnbA Organic Remediation Aromatics Nitoaromatics Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.671778801 8.595270308 8.512035198 8.261754975 8.380514675 8.197711794 7.808518935 8.767108671 7.97152768 8.123487305 7.940624216 218512984 Tet Antibiotic resistance other Rhizobium etli 8C-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.647679143 8.586873763 8.573850601 8.178040785 8.253488176 8.224961348 8.108084053 8.404316687 8.144530753 8.00354191 8.111819526 87199758 pimF Organic Remediation Aromatics Aromatic carboxylic acid Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 8.893851164 8.879019245 8.280559263 8.690840805 8.850758798 8.657332321 8.606647336 8.946254682 8.947017971 8.896039373 9.00517654 8.938198626 260063147 hly virulence hemolysin Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 9.435692938 9.202481502 9.59204084 8.712797074 8.706739747 8.59326876 8.273080482 8.188476515 8.489454727 8.468547123 8.589991409 8.727814036 149921840 TehB Metal Resistance Tellurium Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 9.351666575 9.181746281 9.41208538 8.987489092 8.73102324 8.85988013 8.817922855 8.816337156 8.822716171 9.162279598 9.204501195 9.156365049 163748904 cytochrome Energy process Energy process Shewanella benthica KT99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella benthica; 8.811057704 8.706808595 8.907557924 8.375553562 8.29586887 7.946223309 8.023045927 7.734929955 7.947953211 7.617086461 8.183184483 238720129 iuc virulence aerobactin Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 8.995696938 8.68756407 8.352726349 8.78476352 8.902604266 8.96301653 9.248880101 9.044208541 8.855382393 8.805114811 9.181678103 8.413730406 183601882 pcc Carbon cycling Carbon fixation Bifidobacterium animalis subsp. lactis HN019 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 9.353594378 9.344782734 9.366050728 9.439679422 9.505667599 9.518967708 9.327552319 9.908930165 9.305258606 9.404833144 9.421747098 9.554749876 170722735 cytochrome Energy process Energy process Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.089759664 7.920326468 8.039504925 7.767647366 7.580151636 7.440332372 7.957167127 7.942337099 7.782623419 7.598600858 8.110579758 148260119 NADH_quinone_oxidoreductase Bioleaching Electron transport Acidiphilium cryptum JF-5 8.624616682 8.059340107 8.054032868 7.950179918 8.001785784 7.661002495 8.27568869 8.173344554 8.170570352 8.116920721 8.122406094 28204277 TerD Metal Resistance Tellurium Clostridium tetani E88 11.34584908 11.26751454 11.09554433 10.25081804 10.25431599 10.21129945 10.26806651 9.633540462 10.6206511 10.28880515 10.57672264 10.57563758 19421872 PceA Organic Remediation Others Desulfitobacterium hafniense superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 9.149941051 9.389557062 8.464735531 8.304660072 8.361016057 8.232346547 8.028212988 8.266336168 8.388601319 8.168214867 8.613374162 116697716 sigma_70 Stress Sigma factors Syntrophobacter fumaroxidans MPOB 8.758753898 8.788847973 8.747832891 8.359954294 8.322994276 8.240913636 7.898502007 8.345843549 8.277906956 8.183548171 8.226788202 8.127739324 214043366 glnA Stress Nitrogen limitation Roseobacter sp. GAI101 11.16567872 11.04536079 11.00464672 10.9911475 11.06858654 10.91128132 10.89270994 10.83890828 11.10468198 11.20729065 11.10722518 11.14713359 3157413 katE Stress Oxygen stress Claviceps purpurea superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Clavicipitaceae;genus:Claviceps; 8.4491633 8.461472483 8.479804157 8.196047211 8.21051999 8.360702292 7.314473426 7.771193154 7.564583524 8.007886337 195953839 sox Sulphur Sulphur oxidation Hydrogenobaculum sp. Y04AAS1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenobaculum; 8.473871521 8.647517805 8.894503139 8.203079478 8.027002583 8.038160249 7.776045062 7.691903288 8.289617235 7.799258933 7.526201937 8.112180729 58198973 ZntA Metal Resistance Zinc Rubrivivax gelatinosus superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Rubrivivax; 8.324024182 8.297946531 8.452695667 7.871991256 7.826964348 8.012407314 8.203801312 7.273556544 8.483431002 7.715151857 7.740916376 7.774235137 91697230 glnA Stress Nitrogen limitation Polaromonas sp. JS666 8.991018151 9.196042469 9.065729849 9.10692267 9.288685484 9.296003809 9.162808128 9.291538286 9.060548071 9.658583678 9.699017508 9.413399127 227847991 pstB Stress Phosphate limitation Halogeometricum borinquense DSM 11551 8.068815854 8.228343307 8.100545359 8.166694476 7.930956006 8.258360515 7.970901025 7.881823425 8.10502128 7.885392403 7.885995198 7.658251927 59611733 CODH Carbon cycling Carbon fixation Ruegeria sp. WHOI JT-08 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.589620526 8.224820056 8.064484967 8.44384179 7.723847186 8.41039774 8.037744486 8.006049309 8.137229126 12667600 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium UMTRAdsr857-10 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 9.188744524 8.973090457 9.168470023 9.405119711 9.639963671 9.43186496 9.018075191 9.836425611 8.93847452 9.548900973 9.360513571 9.743679523 71155188 TerZ Metal Resistance Tellurium Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.486847178 8.465543269 8.47128998 8.570092294 8.378450024 8.198322004 8.435096305 8.106051127 8.189650493 8.053071083 8.253013311 183601488 TerC Metal Resistance Tellurium Bifidobacterium animalis subsp. lactis HN019 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 7.387077687 7.406853745 7.615590097 7.273356612 7.033649247 8.20644404 7.019370448 7.125350738 7.532404726 197626310 pcpB Organic Remediation Herbicides related compound Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 8.914085364 8.733380347 8.655930383 8.951955722 8.793805951 8.640608973 8.700732079 9.049493987 8.65710751 9.021560424 8.933796992 9.20874647 229566260 glnA Stress Nitrogen limitation Beutenbergia cavernae DSM 12333 9.302002758 8.674538967 9.092098104 8.78750218 8.533105172 8.960571543 8.939854652 8.928535432 8.88159188 8.852674635 8.800483421 221734214 phn Organic Remediation Herbicides related compound Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 8.557928287 8.362746815 8.974525284 8.273772074 8.236737304 8.009763616 8.401794981 8.276712136 8.286741237 8.335393248 8.269779379 56798126 narI Stress Oxygen limitation Pseudomonas sp. MT-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.264391823 8.180800571 8.005499793 7.858391976 7.766052293 7.742179941 8.260363165 8.00406435 8.12402113 7.967715471 7.991822246 156255109 napA Nitrogen Dissimilatory N reduction Pseudomonas sp. MT-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.283853057 8.366206314 8.225715525 7.596762903 7.891531181 7.889301059 8.111654734 7.597469661 7.873159958 7.646318282 7.843679817 239831489 fnr Stress Oxygen stress Ochrobactrum intermedium LMG 3301 8.442294166 8.509540641 8.48043766 8.294412451 8.280807833 8.162849173 8.354624242 8.70905213 8.407214439 8.715703251 8.510040231 8.557430809 111609816 AssA Carbon cycling Carbon degradation Others sulfate-reducing bacterium AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 8.228961412 8.430994462 8.493442584 8.074169599 7.941327039 7.97434982 7.972233477 7.890588006 7.823114179 8.493255959 7.962598391 8.03287564 142850623 SMR_antibiotics Antibiotic resistance transporter Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 9.898287001 10.06500018 9.831829764 9.635447515 10.37093313 10.52984761 10.22447214 10.6164084 10.54471911 10.3498219 10.64519467 37548678 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.15124323 8.088048536 8.160466635 7.840648943 7.576191618 7.531830597 7.233084974 7.859493413 7.263606025 7.758277778 209549164 nagG Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.932032349 8.84233517 8.769032408 8.593749146 8.568393175 8.287278294 8.729122217 8.675429687 8.725353966 8.414927718 8.469148183 8.531584385 90954599 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.554773667 8.630590514 8.661258627 8.386149986 8.556532202 8.333575564 8.17608763 8.541156148 8.42689994 8.424152208 8.540305446 7.986967911 211997242 lysin Bacteria phage LYSIS Kluyvera phage Kvp1 order:Caudovirales;family:Podoviridae;genus:T7-like viruses; 6.956225701 6.81024592 7.527719069 261409790 cydB Stress Oxygen limitation Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.461510244 8.699341028 8.94295296 8.795607465 8.883094097 8.642890399 8.453095114 8.855310413 8.554933257 8.708024521 8.751897541 9.242732704 182414362 pstC Stress Phosphate limitation Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 9.165763299 9.271030138 9.31167424 8.724632715 8.751495101 8.651476789 8.494199708 8.672467909 8.585409056 8.722982121 8.602617445 8.842270755 89336443 SMR_antibiotics Antibiotic resistance transporter Desulfitobacterium hafniense Y51 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 9.271743048 9.128878545 9.569160689 8.52119906 8.350052639 8.30369414 8.214634176 8.2160742 8.170101824 7.958898901 8.763324798 256690756 pstB Stress Phosphate limitation Halorhabdus utahensis DSM 12940 8.544685281 8.539094578 8.641916355 8.347757206 8.059091842 8.205294384 8.494121151 8.76903361 8.355118583 8.56582831 182415296 CadA Metal Resistance Cadmium Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 8.683400308 8.553561718 8.805897997 7.884187623 7.671636215 8.026220317 8.188225112 7.994124322 8.491866283 8.088613676 8.275747785 83851976 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Oceanicaulis alexandrii HTCC2633 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis;species:Oceanicaulis alexandrii; 9.262245694 9.313141547 9.409425387 9.088754585 8.960794279 8.619537235 8.868479119 9.512147637 8.935258423 9.293027072 9.191235418 9.37027298 219861484 CopA Metal Resistance Copper Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 7.541337132 7.563396479 7.361069077 7.69996626 7.922815523 7.584189321 7.851752244 3059212 bphB Organic Remediation Aromatics Polycyclic aromatics Rhodococcus erythropolis 8.8327718 9.087804335 8.044376093 8.265724514 8.542583322 89044913 pstB Stress Phosphate limitation Oceanicola granulosus HTCC2516 8.418483902 8.076483287 8.564473279 8.364453704 8.386061617 8.525924733 8.476853284 8.213916913 8.208405803 8.305556531 7.925661152 16504378 pstB Stress Phosphate limitation Salmonella enterica subsp. enterica serovar Typhi 9.647580587 9.409179003 9.507212814 9.205283304 9.182647589 9.134019977 9.075022786 9.26590403 9.323271609 9.270868672 9.578455906 9.56119788 3282757 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira; 8.477468135 8.205258431 7.599234599 7.456572363 7.728575679 7.674890363 7.60095289 7.960309391 7.699632001 7.619541244 7.713209377 229204548 katE Stress Oxygen stress Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 8.715269704 8.879842323 8.575314999 8.163601208 8.672591156 8.394834308 8.740668981 8.515419594 8.423497398 8.281469081 8.522234312 8.481475071 178464399 pulA Carbon cycling Carbon degradation Starch Streptomyces griseus subsp. griseus NBRC 13350 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 9.361618243 9.394202657 9.051856597 8.843678696 8.513350366 8.882809032 9.203118071 8.896657855 9.089541275 88703495 Arylest Organic Remediation Aromatics Other aromatics gamma proteobacterium KT 71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 8.633758031 8.570776024 8.429712921 8.285851295 7.587492638 8.227138847 8.691444594 8.358374154 8.572666563 8.430320752 8.633339093 140846285 Catechol Organic Remediation Aromatics Other aromatics Corynebacterium glutamicum R superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 8.252754898 8.253873134 8.67028175 8.251100896 8.134289816 8.058590567 8.095314262 8.279287677 8.532446129 8.285292469 8.059443254 8.259761376 104345875 holin_type_3 Bacteria phage LYSIS Aeromonas salmonicida bacteriophage 25 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 9.143445145 9.06779399 9.172333526 8.480022178 8.352719053 8.468139316 8.418764552 8.07944248 8.361237287 8.186786131 8.554446192 197718967 iro virulence Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 9.591651085 9.701121589 9.734823903 9.028647962 9.2838298 9.330574347 9.601451967 9.81599764 9.217425769 9.7678914 9.798764653 9.75051686 29293410 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.914467537 8.68625262 8.707438256 8.326902502 8.252164173 8.127039185 7.92824977 8.238462784 8.051277038 8.018960269 7.956589983 8.235620686 221726866 type_III_secretion virulence secretion Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.073312612 7.243171872 7.18605351 7.17354894 7.05805481 7.865544377 7.300405206 6.835323442 7.565922097 256558588 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Brachybacterium faecium DSM 4810 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermabacteraceae;genus:Brachybacterium;species:Brachybacterium faecium; 8.453312746 8.590044865 8.301871674 8.15934953 8.197825551 8.39299868 8.820183924 8.46268302 8.337711909 8.407225209 8.471666618 7.989819185 145590766 proO Organic Remediation Aromatics Other aromatics Pyrobaculum arsenaticum DSM 13514 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum arsenaticum; 8.475650868 8.625134549 8.7768638 8.22933334 7.921381116 8.18771739 7.954405448 7.822188266 8.379898743 8.076850911 7.756264753 8.184395918 209520722 atzC Organic Remediation Herbicides related compound Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 9.056038208 9.223175804 8.934151639 8.948448051 9.226813549 9.360988044 9.685096321 9.338611601 9.434941803 9.300190351 9.363063015 9.604490526 196156841 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 9.280367368 9.162721384 9.203629532 8.510267136 8.598113005 8.687138144 8.204547244 8.044470144 8.503169658 7.9939468 8.053693859 8.62352463 241871701 pstB Stress Phosphate limitation Weissella paramesenteroides ATCC 33313 7.988361277 8.053330569 7.480612899 6.923827665 6.758319075 7.481753035 14423343 cumA Organic Remediation Aromatics Other aromatics Burkholderia sp. DBT1 8.341668284 8.162946109 8.223366555 8.067511699 7.913919486 8.00919025 8.181322891 7.999588139 8.164075827 7.896598725 7.96663549 7.772577759 27530791 gyrB other category gyrB Gordonia rhizosphera superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 9.404349888 9.301780352 9.46352459 9.107789653 9.012483075 8.834501087 8.969944463 9.180916408 8.879270029 9.149242706 9.251494664 9.326225759 158316361 CDH Carbon cycling Carbon degradation Cellulose Frankia sp. EAN1pec 8.604995213 8.504400647 8.679441624 9.141752579 8.658713653 7.922424588 8.878532635 8.732175176 8.792686527 8.455255383 8.328972497 8.052218376 95112416 groEL Stress Heat shock Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 8.588111754 8.170483557 8.602343563 8.640769974 8.38940621 7.954012196 8.578370398 8.195473136 8.35996092 8.512600967 8.4495034 59479073 pilin virulence pilin Vibrio fischeri ES114 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Vibrio fischeri; 8.285656078 8.356073558 8.607543432 7.847713802 7.965412236 7.719120517 7.647544129 7.588601966 7.728962866 7.400046672 8.112140892 90417177 obgE Stress Radiation stress marine gamma proteobacterium HTCC2207 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 9.281022329 9.147850905 9.102909123 8.97415617 8.980266786 8.786681113 8.741278348 8.929529918 9.163629401 9.109201409 9.086066155 9.064540078 213964766 TerC Metal Resistance Tellurium Corynebacterium amycolatum SK46 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium amycolatum; 8.490227212 8.493521936 7.659029201 7.961979232 7.997057166 7.806106867 7.974199985 7.945321007 7.840932397 8.148212997 8.069277446 39998513 mer Metal Resistance Mercury Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 8.204695897 8.026378177 7.571259024 7.884581132 7.756213762 7.792907392 8.135547633 8.098445649 7.586506009 7.416872129 149278877 gyrB other category gyrB Pedobacter sp. BAL39 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter; 8.321309952 8.70178211 7.826361963 8.147498633 8.424021755 8.084593316 8.312462014 8.003653792 8.436299088 8.688793719 8.36564204 77546257 obgE Stress Radiation stress Pelobacter carbinolicus DSM 2380 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter carbinolicus; 9.554917725 9.211359588 9.427805484 8.74801597 8.578719145 8.604813175 8.472686619 8.603315352 8.642521163 8.805664981 8.806601981 8.844838108 39651590 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.741234677 9.421366197 9.588119005 9.920001772 9.806271662 9.437626461 9.907894708 9.895838676 9.664382308 9.668978425 9.855553076 9.361771594 221210608 catechol_B Organic Remediation Aromatics Other aromatics Burkholderia multivorans CGD1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 7.777648341 7.861134378 7.571866515 7.671231282 7.748560689 7.894056551 7.714072529 7.792382344 7.440205899 90105743 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.86113628 9.608649382 9.725981773 9.266170001 9.250027089 9.172371773 9.24640581 9.25220503 9.198335815 9.345041532 9.219456136 9.32512775 62906758 dsrB Sulphur sulfite reductase uncultured prokaryote 8.192677376 8.296372084 8.417011239 7.30571991 7.265619444 7.48592783 7.640173508 7.138930815 7.843821165 7.296947723 7.1307068 7.643171688 259348399 B_lactamase_C Antibiotic resistance Beta-lactamases Silicibacter sp. TrichCH4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8.879302734 8.935293154 9.207337046 8.33509027 8.448718821 8.578665934 8.495721419 8.245381956 8.519758879 13249525 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.407028484 8.553053396 8.401888145 8.354132722 8.382977484 8.264272872 8.027105328 8.443036534 8.579705902 8.231132742 8.330912706 8.021750088 33385703 nifH Nitrogen Nitrogen fixation Desulfotomaculum nigrificans superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 9.005105684 9.112833256 8.994388187 9.151447636 9.238031436 9.353645292 8.9916501 9.523088625 9.004656574 9.159489245 9.515693462 8.752115519 91796317 katE Stress Oxygen stress Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 8.108516995 8.573411022 8.036990119 7.893036405 7.98441437 8.577995201 8.92102473 8.448317714 8.657365975 8.102717855 8.486519279 8.471287945 39962604 amyA Carbon cycling Carbon degradation Starch Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 9.131940646 9.338695147 8.794535329 8.778356983 8.291758014 8.908390735 9.15024097 8.868399752 9.010305689 8.601058262 9.051433817 8.347096571 118758862 exaA Organic Remediation Chlorinated solvents Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.296928328 8.70865705 7.874841583 8.104721784 8.28030053 8.423613603 8.2220269 8.478242728 8.135901524 8.390371874 8.357752788 116252977 sigma_24 Stress Sigma factors Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.354705769 7.776376706 8.392908957 8.402389217 8.321720158 7.973120786 8.337112407 8.11355965 8.04666839 8.094421064 7.873484656 25028857 Catechol Organic Remediation Aromatics Other aromatics Corynebacterium efficiens YS-314 9.279292013 9.212098416 8.378254121 8.74956993 8.670328837 9.069367794 8.629212401 8.833426394 8.438281367 8.486055659 8.478799625 206677815 phenol_oxidase Carbon cycling Carbon degradation Lignin Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 9.606110833 9.507532466 9.227112106 8.538618603 8.695845729 8.926062298 9.212849854 8.905487108 184192923 pchCF Organic Remediation Aromatics BTEX and related aromatics Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 9.197644023 9.129878606 9.209422038 8.457173693 8.44794768 8.378591576 8.365568786 8.404850591 8.373571078 8.431651219 8.545837544 198252890 obgE Stress Radiation stress Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 8.638594812 8.480906402 8.317716234 8.594438206 8.37697824 8.336738667 8.614140904 8.599919612 8.889352627 8.826342344 8.866902995 113529329 xylJ Organic Remediation Aromatics BTEX and related aromatics Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 9.524797333 9.511160003 9.531094664 9.443301254 9.75235027 9.544801591 9.143424167 9.756133133 9.125316038 9.593040793 9.627297773 9.748891072 229378051 sigma_70 Stress Sigma factors Oxalobacter formigenes HOxBLS superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Oxalobacter;species:Oxalobacter formigenes; 8.964608456 8.781409226 8.642910353 8.131242909 8.093493411 8.558183535 8.47856713 8.193732144 8.037352721 8.250910763 262184637 hrcA Stress Heat shock Corynebacterium aurimucosum ATCC 700975 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium aurimucosum; 9.014455549 8.741282248 9.252514558 9.132541415 9.025828798 8.722987022 9.068560589 9.327789293 9.279826003 9.311822179 9.330843325 9.500827903 116672620 Catechol Organic Remediation Aromatics Other aromatics Arthrobacter sp. FB24 8.033049317 8.258276999 7.794475362 7.876669144 8.030904374 8.056842116 7.799890867 8.223204844 7.971190398 8.219111671 8.047440629 209499358 MFS_antibiotic Antibiotic resistance transporter Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.684977074 8.344826074 7.46203555 7.639538261 7.99139019 8.266144534 7.496941857 8.427688135 7.312949365 7.61783611 118424526 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.401299979 8.262966566 8.448286438 7.430979655 7.530351846 7.926805522 7.953520413 7.599802566 8.547829286 7.547456454 7.593597783 7.531713963 242121046 proV Stress Osmotic stress Desulfovibrio salexigens DSM 2638 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio salexigens; 8.783389005 8.606647548 8.665200707 8.157471048 8.129842282 8.090131745 8.12062588 8.188537044 8.208685309 8.016407836 7.973898996 8.176553768 99082987 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 9.600935191 9.570502492 9.707147015 8.893546615 8.743290845 8.8111362 8.786209338 8.753290192 8.695544408 8.823133292 8.822720349 9.189676549 146407251 sox Sulphur Sulphur oxidation Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.793705728 8.718622032 8.956256027 8.364584959 8.625976927 8.339332626 8.910859184 8.277492884 8.836055675 8.526752223 8.68385938 8.41709474 15487810 clpC Stress Protein stress Lactobacillus sakei superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus; 8.02260387 8.060981888 7.506067082 7.328856953 7.341825246 7.743473525 7.991003034 7.623383516 7.647950948 145303059 TehB Metal Resistance Tellurium Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 8.992614549 9.116654548 8.894593626 7.797836821 8.116188143 8.45646847 8.913917525 8.001769707 8.801371422 8.449713456 8.312497628 8.273455214 115371867 trzN Organic Remediation Herbicides related compound Stigmatella aurantiaca DW4/3-1 9.202052314 8.976186469 9.300101636 8.796123902 8.803832432 8.964937911 8.677046082 8.768570661 8.636998833 8.714242663 9.003604371 8.993130577 116619348 TerC Metal Resistance Tellurium Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 8.349173124 8.350605326 8.199267836 8.356626249 8.010041258 7.838706117 8.100177084 8.152016871 8.351649096 8.059102615 7.919202803 7.572101103 63003127 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured soil bacterium 8.738134801 8.792273281 8.827350299 8.037455417 7.986814683 8.13647065 8.277722229 8.066961513 8.55483621 8.088447074 8.128716703 8.263271691 209401662 narG Nitrogen Denitrification uncultured bacterium 8.124335988 8.101562084 7.266025875 7.388847383 7.579690276 7.360730413 7.379036817 8.073245669 7.290581996 7.358130819 7.490664832 156744181 obgE Stress Radiation stress Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 8.364586305 8.017724264 7.786978882 8.024694252 7.166790147 7.843407584 7.730785126 8.06032566 7.696227605 92115784 hrcA Stress Heat shock Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 8.79778135 8.58220583 8.348213915 8.133463768 8.274709867 8.229636394 8.082065282 8.540358681 8.311939754 8.5044733 8.522792112 8.53027298 255035584 katE Stress Oxygen stress Dyadobacter fermentans DSM 18053 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 10.19083218 10.04186251 10.23946949 10.1125877 10.09850047 9.577959987 10.27190464 9.870367179 9.780471119 10.26708986 10.02905383 119715876 fnr Stress Oxygen stress Nocardioides sp. JS614 9.0580354 8.946045655 9.235247913 8.660691825 8.509900074 8.461755746 8.588516298 8.686271924 8.547713876 8.515676808 8.577499066 183983051 B_lactamase_A Antibiotic resistance Beta-lactamases Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 11.11544908 10.9723028 11.0013396 10.54805033 10.61307788 10.32416253 10.5219508 10.37603163 10.67301156 10.39110618 10.39947797 10.58089009 39995216 cytochrome Energy process Energy process Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 9.763406695 9.698792341 9.848012752 8.924729473 8.941967999 8.990743819 9.114709185 8.753312553 8.937099007 8.887809241 8.665424491 9.310248964 28629753 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.21303552 7.79544077 8.181889179 7.975742384 8.011583152 7.201793337 7.768036792 7.679376092 7.800869797 8.000047082 7.562822756 153899584 nagG Organic Remediation Aromatics Aromatic carboxylic acid Methylobacterium extorquens PA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 8.964446935 8.897647177 8.681991423 8.639855181 8.966360912 9.159117364 9.110241567 9.064284544 8.849932184 9.002324306 8.633551665 212538231 ABC_antibiotic_transporter Antibiotic resistance transporter Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 11.21983017 10.9434062 10.13208368 10.21773138 10.01919846 9.835230043 10.82323382 218521423 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 8.092363554 8.088625234 7.76570019 7.780963616 8.041384715 8.203751492 8.005715352 8.105351807 212716932 clpC Stress Protein stress Bifidobacterium catenulatum DSM 16992 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium catenulatum; 9.124036107 8.626746598 8.509960021 9.033279186 8.682890952 8.290534074 8.997142845 8.854764837 8.8672317 8.693159594 8.688238741 8.759559151 229468292 pstB Stress Phosphate limitation Exiguobacterium sp. AT1b 8.310067969 7.928941599 242348599 katA Stress Oxygen stress Staphylococcus epidermidis M23864:W1 8.273359003 8.396925207 8.353863422 7.953321239 7.645773446 8.070217527 8.271661573 7.80341231 8.099804358 7.669487101 7.871550861 75700940 ZntA Metal Resistance Zinc Anabaena variabilis ATCC 29413 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena variabilis; 8.012048094 8.260948738 7.607871178 7.19138734 7.255701988 7.005755541 7.41115167 7.455526221 148265519 silC Metal Resistance Silver Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 9.022199929 9.1374109 9.02777836 8.521733713 8.438139811 8.465006195 8.262840127 8.469694259 8.355374501 8.539218719 8.614773245 8.788295815 260453997 sigma_70 Stress Sigma factors Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 8.75029708 9.009236344 8.754719627 8.319093972 8.301978188 8.346948743 8.890677799 8.382655496 9.011880622 8.134166033 8.126764362 8.313350289 239820644 fnr Stress Oxygen stress Variovorax paradoxus S110 9.494541024 9.144316835 9.292292495 8.401711075 7.975377874 8.269083447 8.702250749 8.201551165 8.878122243 8.421656767 8.529026224 8.536074674 117929322 dnaK Stress Heat shock Acidothermus cellulolyticus 11B 8.309242027 8.386600143 8.496298047 8.296402328 8.000977947 7.771747674 7.669921518 8.304687217 8.178592467 8.221282856 7.903504795 8.140417608 158426312 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 9.257854551 9.230499757 9.458056472 8.735608185 8.802992009 8.555726489 8.877924637 8.650883453 8.886039918 8.621240078 8.778721337 8.806845308 118577255 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 8.554058626 8.201032897 8.740832426 8.068183822 7.933108923 8.099930568 8.409910601 7.479317658 8.032879721 7.878147658 7.910901197 7.81816208 239794764 pstB Stress Phosphate limitation Desulfovibrio magneticus RS-1 8.527125895 8.256787827 8.020469238 7.542931656 7.777272227 7.596623272 7.698904552 7.549707812 189423285 nrfA Nitrogen Dissimilatory N reduction Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 6.889308331 6.984049263 225871583 cap virulence capsule Bacillus cereus 03BB102 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 8.582454507 8.53917058 8.795616232 8.175135303 7.952056003 7.785460141 7.266074901 7.683882445 7.745141759 7.77898483 7.994917372 86741831 glnA Stress Nitrogen limitation Frankia sp. CcI3 8.70432914 8.577694091 8.597651659 8.629444249 8.357971573 7.890968299 8.320103517 8.316795226 8.54904501 8.45423829 8.426427135 8.130683883 121535015 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Thermosinus carboxydivorans Nor1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Thermosinus;species:Thermosinus carboxydivorans; 8.841618284 8.682038652 8.975887198 8.096591117 8.235144888 8.231826422 7.899926066 7.681469931 8.498486309 7.74603354 7.891287626 8.38868174 74056228 iro virulence Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 10.01575509 9.967342782 9.968944247 9.49289524 9.518748432 9.283346204 9.410759412 9.549774868 9.443954373 9.64179598 9.557120505 9.645686637 54022690 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 8.0057992 8.064015972 8.382464473 8.525699118 8.266608254 8.363255747 8.342301808 8.435574087 8.240376449 120611299 phoB Stress Phosphate limitation Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 8.139275186 8.056923488 7.63278538 7.430904529 7.771253258 7.872023855 7.662492315 8.143681364 7.726717173 7.561174001 7.854387404 283947235 sigma_24 Stress Sigma factors Conexibacter woesei DSM 14684 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Conexibacteraceae;genus:Conexibacter;species:Conexibacter woesei; 8.301826963 8.155966244 7.84211811 7.772798792 8.178961172 8.10814124 8.059813543 8.234555046 7.786252903 7.980151132 7.742515715 153889031 dehH109 Organic Remediation Chlorinated solvents Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 9.028327906 9.003394845 8.908032398 8.528468801 8.702092685 8.526953295 8.32873267 8.126368522 8.506404568 8.84279313 8.661283494 74318308 phn Organic Remediation Herbicides related compound Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 8.78580014 8.763556543 8.721813824 8.045688218 7.901923715 8.036544091 8.29656552 7.793639307 8.465113438 7.690468926 7.881292639 7.849615014 222119380 gyrB other category gyrB Macrococcus caseolyticus JCSC5402 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Macrococcus;species:Macrococcus caseolyticus; 7.446141041 7.158381191 257486120 ureC Nitrogen Ammonification Pseudomonas syringae pv. tabaci ATCC 11528 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas amygdali; 9.666804184 9.722196559 9.967974074 9.468066808 9.455261633 9.53752894 9.447474389 9.775524457 9.274540102 9.696223096 9.690560661 9.889608616 126437893 linB Organic Remediation Pesticides related compound Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.846520866 8.716553948 8.687955213 8.258205667 8.511386981 8.613728308 8.226015741 8.480129026 8.449837847 8.696357908 8.66670921 8.645804396 89343562 gyrB other category gyrB Rhodoferax ferrireducens DSM 15236 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 8.880220287 8.627836023 8.891057965 8.483819869 8.349102112 8.446198962 8.452114451 8.232249135 8.247288131 8.365952377 8.354417025 8.434827969 115961441 mdlB Organic Remediation Aromatics Aromatic carboxylic acid Strongylocentrotus purpuratus superkingdom:Eukaryota;kingdom:Metazoa;phylum:Echinodermata;class:Echinoidea;order:Echinoida;family:Strongylocentrotidae;genus:Strongylocentrotus; 7.955455451 7.97157138 6.624768043 7.301443782 222526531 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Chloroflexus sp. Y-400-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus; 8.227770487 8.627805762 8.495177071 8.747179717 8.767701226 8.67817236 8.695443078 9.07053427 8.69171345 8.839544155 8.801423702 8.729259528 93355860 iro virulence Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.690947551 9.034142373 8.847132968 8.2336267 8.179408564 7.971416814 8.601937485 8.058863443 8.407052823 8.146928422 8.243970026 8.002082639 197777144 gyrB other category gyrB Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 9.507848977 9.709663178 9.826653415 9.261829324 8.927445976 9.314958712 9.483368146 9.127700313 9.59337505 9.45305808 9.684445396 9.448518394 119718358 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 10.13949526 9.820854802 10.41874929 10.0322278 10.3552186 10.1623753 9.988031376 10.23170464 10.04905096 10.08889176 10.18543881 10.66915283 118617247 cydB Stress Oxygen limitation Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 9.629645396 9.46366491 9.472231527 9.784903878 9.919052579 9.576782891 9.3446711 9.829890392 9.149282284 9.819319258 9.688048518 9.959033483 161389988 sox Sulphur Sulphur oxidation Phaeobacter gallaeciensis BS107 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 7.989686869 8.094493086 8.327258221 7.980039622 8.337035226 8.40404968 8.460034322 8.244343441 7.689302616 8.017051816 7.999482756 9950104 CopA Metal Resistance Copper Pseudomonas aeruginosa PAO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.457025859 8.158794681 8.600205909 7.736227727 7.634330075 7.870836286 8.030431556 7.632612206 7.760946278 7.728874097 7.754121649 37548710 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.767920474 8.265993867 8.853594699 8.176314991 7.804689251 7.981078513 7.645736774 7.638783612 8.086862504 7.80689001 7.887080164 8.028411547 4704462 nahA Organic Remediation Aromatics Polycyclic aromatics Rhodococcus sp. NCIMB12038 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 10.02352815 9.868078279 9.597051887 9.827306516 9.586538158 9.429263695 9.621923469 9.394324774 9.705651563 9.591781312 9.529850326 9.412863405 118049144 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.271089352 8.457980227 8.502202368 8.898871168 8.852144684 8.509349081 8.561109051 8.662117869 8.87965101 8.638613302 8.67226432 8.122630623 149211003 amyA Carbon cycling Carbon degradation Starch Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 7.992306001 7.984639544 7.263263553 7.129716049 7.160555353 6.502040481 7.302371527 6.89272489 7.003083283 7.053143325 223954132 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 9.232146147 9.388641262 9.02967767 8.381693652 8.768045877 8.866144511 8.970652828 9.129910565 9.092232349 8.51766912 8.781022941 8.651365889 161166430 sigma_24 Stress Sigma factors Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 9.032632987 8.997652728 8.885045889 8.626682901 8.590131236 8.307858242 8.430113602 8.548419129 8.246944843 8.241338815 8.539058705 8.461442136 227493823 xylA Carbon cycling Carbon degradation Hemicellulose Mobiluncus curtisii ATCC 43063 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus curtisii; 8.346971091 8.533110945 8.454919331 8.127720949 7.632604336 7.935566528 7.020398387 6.747866937 7.659722669 7.52940002 7.360075653 7.899102822 257454246 MATE_antibiotic Antibiotic resistance transporter Enhydrobacter aerosaccus SK60 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Enhydrobacter;species:Enhydrobacter aerosaccus; 8.509833506 8.488531651 8.613974145 8.147662491 8.199697854 8.419547479 8.402346006 8.6846996 8.428127693 8.695116115 8.760198178 8.637684409 78061123 TerC Metal Resistance Tellurium Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 9.189276872 9.311930655 9.089799231 9.09562036 8.741363703 8.901082786 8.745000118 9.234451455 8.778380939 9.258954195 9.438102225 8.997592798 113529260 qorL Organic Remediation Aromatics Polycyclic aromatics Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.784356584 9.520731603 9.143520523 8.197085844 7.833410361 8.841575056 9.296662556 8.93743768 8.908361981 8.61363301 8.645309097 8.725383115 261854651 pilin virulence pilin Halothiobacillus neapolitanus c2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Halothiobacillaceae;genus:Halothiobacillus;species:Halothiobacillus neapolitanus; 8.214073107 8.360200655 8.30533413 8.078676362 7.912963619 7.739950128 7.946459678 8.1118496 8.191402981 8.009222298 7.885888519 7.987746575 225386702 Tet Antibiotic resistance other Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 8.502897623 8.426965144 8.174009922 8.532506351 8.632946186 8.267958345 8.519843805 8.576239645 8.221916917 8.926509828 8.177868107 134142967 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 8.720192857 8.929612693 8.898956292 8.168031231 8.130045537 8.413046707 8.726925068 8.181146558 8.603727746 8.320584688 8.237671387 8.649918337 163781955 ppx Phosphorus Phosphorus utilization Hydrogenivirga sp. 128-5-R1-1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenivirga; 8.390980451 8.594645183 8.400136944 7.958950653 7.827903061 7.841852941 7.634210111 7.96535144 7.838895399 7.934215567 7.94519148 7.952428248 124362922 CadA Metal Resistance Cadmium Methanocorpusculum labreanum Z superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanocorpusculaceae;genus:Methanocorpusculum;species:Methanocorpusculum labreanum; 8.75482502 8.988686379 9.120516982 8.682937118 8.770955481 8.576501274 8.628471072 8.891321979 8.843504034 8.991061053 8.905557909 8.947464752 110818896 Catechol Organic Remediation Aromatics Other aromatics Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.544739048 8.585757723 8.766412536 8.774312706 8.427938526 8.263393844 8.441565186 8.610571357 8.47098792 8.398180768 8.403267931 8.681123291 121609529 4HBH Organic Remediation Aromatics BTEX and related aromatics Verminephrobacter eiseniae EF01-2 8.370930604 8.533390223 8.611192073 8.0707078 7.903933485 7.949521922 8.05532908 8.095293924 8.129089273 8.101787782 8.048676764 7.982510427 209500955 phn Organic Remediation Herbicides related compound Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.107054484 8.298325029 8.318491834 7.344203439 7.727225025 8.12537476 8.368662723 7.990851983 8.345682744 8.051243055 8.13319496 8.170271406 118051712 gyrB other category gyrB Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.445870322 8.830407992 8.626520606 8.138823584 8.591574447 8.927649901 8.998768845 8.89703759 8.945386629 8.858209307 8.744016201 9.199412599 77465015 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacter sphaeroides 2.4.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 8.754129584 8.742237644 8.356588749 7.800044576 8.282491034 8.302222287 8.014078478 8.628085624 8.137024353 8.252992148 7.999350472 76875588 katE Stress Oxygen stress Pseudoalteromonas haloplanktis TAC125 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas haloplanktis; 8.342312703 8.4295499 8.264151929 7.606408208 7.795850976 8.139648707 8.356063938 7.82871422 8.004446273 7.808188483 7.833785214 7.889349464 85831632 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Leeuwenhoekiella blandensis MED217 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Leeuwenhoekiella;species:Leeuwenhoekiella blandensis; 8.336067518 8.220738161 8.263811854 7.80921355 7.913284711 8.010455081 7.636040585 7.964858175 7.80669117 7.796370964 7.888226472 212527992 pcpB Organic Remediation Herbicides related compound Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 8.304838646 8.323680802 7.388848011 6.9627084 7.538886816 7.182156379 7.048890007 7.465656091 146406446 napA Nitrogen Dissimilatory N reduction Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.215109618 8.192328299 7.569471728 7.553316698 7.421868229 7.760930978 7.260918799 8.160614328 7.465366595 7.387295865 7.610141572 169628755 hrcA Stress Heat shock Mycobacterium abscessus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.407557268 8.345195294 8.730620378 8.47434208 7.950494531 8.319720718 8.530078181 8.531506248 8.402027637 8.224724291 7.778493797 194560975 MFS_antibiotic Antibiotic resistance transporter Burkholderia cenocepacia PC184 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 8.979970359 8.784430417 8.870470036 8.58442689 8.478939622 8.251820632 8.330029362 8.811156419 8.497917189 8.543640104 8.492002119 8.585088897 224943104 obgE Stress Radiation stress Eikenella corrodens ATCC 23834 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Eikenella;species:Eikenella corrodens; 9.412126588 9.698458563 9.636894066 9.166086014 8.655783661 8.792285784 84778383 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.368514985 8.576380781 7.901781982 8.036746497 7.887225513 7.910298773 8.084210785 8.25706136 8.302124136 8.286327725 8.139500912 35213051 clpC Stress Protein stress Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 9.230835878 9.43701925 9.13714584 9.165623116 9.225951815 9.327615648 9.56384277 9.334213041 9.468467323 9.279212214 8.945624945 9.11377678 197931425 exochitinase Carbon cycling Carbon degradation Chitin Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 9.428231384 9.482639658 9.530858192 8.98921135 8.947821305 8.742636844 8.925921393 9.139302635 8.970317919 9.015686513 8.936526471 9.191670595 91202446 hzo Nitrogen Anammox Candidatus Kuenenia stuttgartiensis 8.643707515 8.433150062 8.651230317 8.479127348 8.438785426 8.159733261 7.583173602 8.41654429 8.627832335 8.114715032 8.386672818 78193355 ppx Phosphorus Phosphorus utilization Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 8.835756146 8.927669442 8.762360071 8.064508696 8.180244733 7.974088216 8.119422191 8.450036271 8.283108608 8.03492269 8.326073911 196186298 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Brevundimonas sp. BAL3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas; 9.519444472 9.446606411 9.302263623 8.762760808 8.760451818 9.042149444 9.348570209 8.960062263 9.105978784 9.039792169 9.069467534 8.916618835 89099463 SMR_antibiotics Antibiotic resistance transporter Bacillus sp. NRRL B-14911 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 9.064606206 8.991335116 9.036831927 8.462727869 9.325378701 8.826885048 8.265410655 8.578068293 8.317738496 8.659894709 8.928786049 8.724958558 153877007 pstB Stress Phosphate limitation Beggiatoa sp. PS 8.493256241 8.615394945 8.98691742 8.25872568 8.464504793 8.347429414 8.538036832 9.018106229 8.292646474 8.904812197 8.630940528 8.749869961 148498930 atzA Organic Remediation Herbicides related compound Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 10.24945502 9.909261446 10.00536685 9.744338979 9.608621598 9.594425111 10.1438906 9.696165441 10.22241326 9.525685033 9.724196872 9.684788184 126314902 Catechol Organic Remediation Aromatics Other aromatics Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.658211993 8.869440491 8.483633346 8.435051857 8.904011539 8.930483511 9.1047185 8.929540602 8.626669088 8.663324555 9.1266488 8.834199994 198267442 bphC Organic Remediation Aromatics Polycyclic aromatics Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 8.112714148 8.10654602 8.462223448 7.712735996 7.773816573 7.700830301 7.683100681 7.684960455 7.89238293 7.688536187 7.811625376 7.882202866 120600573 AceA Carbon cycling Carbon degradation others Shewanella sp. W3-18-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 8.815186423 8.924054984 9.08349304 8.319497495 8.264542125 8.372580236 8.071987386 8.130982849 8.513851151 8.374253085 8.393217366 8.518839661 39996127 cytochrome Energy process Energy process Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 8.353516147 8.988791802 8.503449304 8.271995519 8.293779821 8.508209908 8.987972943 8.493094342 8.343391132 8.563496829 8.32854872 219939155 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9.271442281 9.096147675 9.267760449 8.821863358 8.755577904 8.775944482 8.801086206 8.826619975 8.709694565 9.014501775 9.000831337 9.120978267 239821905 cydB Stress Oxygen limitation Ochrobactrum intermedium LMG 3301 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 8.296406618 8.22832885 7.884841344 7.627889533 7.706831183 7.923135423 7.993489229 7.795632301 7.822763334 7.609087612 68234636 amyA Carbon cycling Carbon degradation Starch Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.635842839 8.36534156 8.485585036 8.083514934 8.023618307 7.965491317 7.743186986 7.550475147 8.401485556 7.758170815 7.712857403 8.156542586 254512502 glnA Stress Nitrogen limitation Rhodobacteraceae bacterium KLH11 7.846797888 8.280100755 7.800586597 7.267430871 8.054451826 7.858083199 7.678049604 7.922229137 7.723582042 241205462 Tet Antibiotic resistance other Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.934584221 8.61390554 8.750070557 7.727031709 8.097143819 8.169152863 8.430576557 7.480751657 8.348695849 7.900660361 7.87070413 8.138831763 84666255 pulA Carbon cycling Carbon degradation Starch Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.272965967 8.070100867 8.245502722 8.209951567 7.953080707 7.321207299 7.980842883 7.785542282 7.964815899 7.496535861 7.484035933 118170007 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.551094013 8.228791217 7.694663038 7.445495215 7.683644808 7.426940815 7.113537626 7.138966968 7.655942065 7.300147356 113529246 nahA Organic Remediation Aromatics Polycyclic aromatics Ralstonia eutropha H16 8.907068842 8.473248636 7.865570768 8.041789685 7.776044679 8.63393623 7.981050397 70729461 endochitinase Carbon cycling Carbon degradation Chitin Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 9.668483442 9.903984207 9.854033173 9.226412172 9.147745261 9.354079966 9.27179849 8.969582429 9.241086457 9.218355182 9.432160715 21616730 phenol_oxidase Carbon cycling Carbon degradation Lignin basidiomycete C30 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 8.50649526 8.558248258 8.716380428 8.561309712 8.247300353 8.191003797 7.078905696 6.95795418 7.619461653 7.678815901 7.834890875 8.023736512 121604041 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 10.22152933 10.32286346 10.00430462 9.601563087 9.897287467 10.17672743 10.43833738 10.11905508 10.26925943 10.20353041 10.35340888 10.48551582 239928121 exoglucanase Carbon cycling Carbon degradation Cellulose Streptomyces ghanaensis ATCC 14672 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 9.260959273 9.816495318 9.612534938 9.262800226 9.711142736 10.23403874 10.15181291 9.884545138 10.05760845 9.937215266 9.791719224 10.18340924 112875704 arhA Organic Remediation Aromatics Heterocyclic aromatics Terrabacter sp. HH4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Terrabacter; 8.30331436 8.517265657 8.470616063 7.777090071 7.958841497 8.177246232 8.382430399 7.585665353 8.360559024 7.904405462 7.989345366 7.796778634 89145062 ppk Phosphorus Phosphorus utilization Microbacterium arborescens superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium; 8.423881101 8.089295473 7.586511189 7.184953276 7.73272297 7.697388423 8.162764801 8.12177541 8.025457083 8.353224819 8.200857689 212561543 AceA Carbon cycling Carbon degradation others Anoxybacillus flavithermus WK1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Anoxybacillus;species:Anoxybacillus flavithermus; 8.878241266 8.755118571 8.908121691 8.448075902 8.71277547 7.947785169 8.101099903 166711712 glnA Stress Nitrogen limitation Xanthomonas oryzae pv. oryzicola BLS256 8.746449864 8.467767736 8.733868986 8.283918128 8.0924174 8.679107435 8.276872774 8.255670905 8.539686657 8.348862243 8.595936724 8.486975721 120401651 grpE Stress Heat shock Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 9.089071944 8.707635522 8.645347594 8.455727058 7.77856245 8.313012758 8.646398215 8.276294563 8.240839467 8.159185757 8.118185094 8.056272941 94152547 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 7.270159362 7.294281317 7.508119365 7.350470198 6.724060478 7.91861179 7.285139851 7.137688955 220720621 bphA Organic Remediation Aromatics Polycyclic aromatics Variovorax paradoxus S110 9.322220293 9.436577474 9.1681388 9.032573105 8.770480047 8.883574919 8.608976671 8.635958356 8.561433287 8.750228527 8.914182954 8.910993835 88861520 TehB Metal Resistance Tellurium Pseudoalteromonas tunicata D2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas tunicata; 8.313384163 8.476581178 8.447720678 8.250168717 8.456223734 8.530784695 8.612769173 8.542186519 8.096553096 8.120358331 8.017260432 118617141 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 8.31221214 8.358618336 8.216634581 8.135697842 7.842719773 8.418599118 8.181133858 8.595750294 8.289853517 7.87482933 87301993 cap virulence capsule Synechococcus sp. WH 5701 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 9.748979629 9.780860628 9.836728905 9.073420733 9.148751177 9.160275536 9.286642064 8.767542318 9.287220472 9.023449468 9.150523184 9.235411835 222111338 CopA Metal Resistance Copper Diaphorobacter sp. TPSY superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax ebreus; 9.798275669 9.829347986 9.909642579 9.100541864 9.136899418 9.147308458 9.395108392 9.130706807 9.532932865 9.088831454 9.080371683 9.39912338 217413234 ppk Phosphorus Phosphorus utilization Bifidobacterium gallicum DSM 20093 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 8.408508311 8.629884505 8.678403043 8.255776696 8.011028916 8.147449449 8.66779677 8.095782229 8.923733854 7.86845276 7.849484132 8.056312819 194291986 iro virulence Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 9.56053521 9.34997007 9.363332511 8.232745454 8.655620109 8.839501812 9.26865646 8.696369452 9.467145693 8.53959858 8.624097095 8.944625358 115525110 phn Organic Remediation Herbicides related compound Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.629462487 8.516177313 7.772452192 7.959605934 8.001027326 8.368947652 7.86387278 8.109694 8.158416069 8.224656712 229861703 sigma_24 Stress Sigma factors Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 9.29150934 9.195397985 8.890955775 8.733675561 8.687132848 9.001761419 9.07600247 8.805174698 9.417095715 8.623044426 8.577993676 8.65632311 88799325 ahpC Stress Oxygen stress Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 8.661607316 8.613193776 8.044443634 8.640246203 8.647216894 8.60638696 8.307569458 8.749171454 8.197034726 159037801 katE Stress Oxygen stress Salinispora arenicola CNS-205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 8.263150724 8.078423646 8.086190245 7.587434542 7.647080301 7.879915046 8.031600455 7.493183945 7.905850917 8.150208077 7.880203477 7.836588588 157144924 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Citrobacter koseri ATCC BAA-895 9.383459684 9.167408506 9.370330436 9.003327592 8.814787812 8.467200041 8.548186304 8.649911744 8.599512285 8.658064109 8.861444953 153890549 ara Carbon cycling Carbon degradation Hemicellulose Opitutaceae bacterium TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 9.749884562 9.731349605 9.787541843 8.972943716 9.197457304 9.362405343 9.29012348 9.500866014 9.166804338 9.473575412 9.529826075 9.765251979 145557579 oxyR Stress Oxygen stress Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 8.28886561 8.539937041 8.197713473 7.803651325 7.693817442 7.755329943 8.03666555 7.779581421 8.387926215 7.834513137 7.756417149 7.79996449 77460301 atzA Organic Remediation Herbicides related compound Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.889355372 8.601195667 8.436426659 9.477550896 9.427024718 8.977463328 8.818903771 9.77260339 8.785519109 9.085251753 9.003743916 9.441380129 50952849 lip Carbon cycling Carbon degradation Lignin Trametes versicolor superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 8.404937123 8.698405763 8.613150079 8.372481333 8.593675042 8.414536169 7.987984726 8.649754882 8.455808793 8.496243676 8.441805883 8.617739973 16753175 CopA Metal Resistance Copper Geobacillus stearothermophilus 8.622810297 8.665783638 8.728544278 8.114961865 7.950956691 7.997955641 7.962591338 7.682037357 8.299486649 8.074707491 8.32540609 8.351149475 171852912 pimF Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium urealyticum DSM 7109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium urealyticum; 10.1243073 10.06152828 9.989782844 10.27325586 10.37419395 10.09283851 10.05161987 10.62439065 10.19530716 10.36932081 10.22352789 10.30893559 83765297 bphA Organic Remediation Aromatics Polycyclic aromatics Aspergillus oryzae 9.545918351 8.844748421 8.512673489 9.540440223 9.24461169 8.955571781 9.1633847 9.090569985 8.72877836 9.040182067 9.094404473 8.852262081 120604835 silC Metal Resistance Silver Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 9.634627021 9.555420426 9.680687809 9.354557216 9.454310112 9.646357535 9.974915267 9.353761946 10.02237967 9.36666178 9.271871537 9.441566251 119398924 amyA Carbon cycling Carbon degradation Starch Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 8.564437528 8.959989328 8.803936784 8.899824118 8.946311041 8.982805291 8.773356633 9.20322385 8.724806048 9.003013565 9.030929133 9.030085731 191163463 gyrB other category gyrB Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.457595892 8.480850362 8.603873832 8.327687347 8.304691334 8.298642473 8.192237574 8.122322124 8.341277244 7.851617653 7.942856586 8.047182945 91186958 pcc Carbon cycling Carbon fixation Psychroflexus torquis ATCC 700755 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Psychroflexus;species:Psychroflexus torquis; 8.570586617 8.786306137 8.500460117 8.547721889 8.400710591 8.702625935 8.723461713 8.382210202 8.776209825 8.883645598 8.392475919 34498086 inv virulence invasion Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 8.264239308 8.170244631 8.338890914 7.98337406 7.998858688 7.848257024 7.564922312 7.93216683 7.884320677 7.826582271 7.798299958 7.968119399 20090442 gyrB other category gyrB Methanosarcina acetivorans C2A superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina acetivorans; 8.390702728 8.3420205 8.638473273 8.176436369 8.365098656 8.336240376 8.092316113 8.156456754 8.068309262 8.075124696 8.042517135 8.278079774 82393828 xylG Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas sp. KB35B superkingdom:Bacteria;phylum:Proteobacteria; 8.085647211 8.272841082 7.56958283 7.751931546 7.588982759 7.508778745 7.298084247 8.086304837 7.511571829 8.068894661 7.740052002 229242918 hly virulence hemolysin Cellulomonas flavigena DSM 20109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 8.362855728 8.297929688 8.120857703 8.151233215 8.113700076 8.154838316 8.244446249 8.277209472 8.215915534 8.109007909 8.191437521 121610744 pilin virulence pilin Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 9.04946633 8.551716203 8.923245536 8.587625838 8.486468047 8.73862012 8.441453868 8.48408841 8.532501643 8.687910485 8.332438133 39937454 AceA Carbon cycling Carbon degradation others Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.745759026 8.973685599 9.053771069 8.93560042 9.14068432 8.850077747 9.181948916 9.462506305 9.109933671 9.195471561 8.933620925 9.175147225 84389125 sigma_24 Stress Sigma factors Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 9.020487856 8.961129936 9.075245954 8.176852531 8.249603265 8.476064282 8.385480329 8.465672507 8.398710847 8.325975393 8.39446979 8.510629429 91783324 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.125703373 8.606004773 8.040916029 8.407677049 8.488235133 8.483275175 8.901871083 8.609152037 8.568011288 8.73097647 8.986081344 8.756906261 29605663 trzN Organic Remediation Herbicides related compound Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 10.24886688 10.04074843 9.996040357 9.127096898 9.597997457 9.761839897 10.2858262 9.374960305 10.21858486 9.598073433 9.50714348 9.915488015 148369429 pcaG Organic Remediation Aromatics Other aromatics Brucella ovis ATCC 25840 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Brucella;species:Brucella ovis; 8.283404264 8.14466564 8.252395889 7.497182164 7.628174246 7.627592841 7.380788345 7.144116453 8.112651288 7.497593578 7.259215629 7.35905443 120593785 pimF Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8.458894015 8.357279388 8.540241259 8.618610809 8.638972266 8.360656264 8.777711636 8.737819309 8.654715472 8.597467033 8.531453306 8.261657852 125972954 endoglucanase Carbon cycling Carbon degradation Cellulose Clostridium thermocellum ATCC 27405 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 9.672231582 9.594570693 9.114070673 9.379492798 9.206661848 9.649036543 9.32060603 9.254929524 9.043233938 8.916366458 8.926205875 83311795 rubisco Carbon cycling Carbon fixation Magnetospirillum magneticum AMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 8.180136673 8.4242254 8.576341912 8.043428361 7.911351492 7.886530106 7.725772284 7.381551718 7.974043938 7.521443557 7.395288423 7.746630525 145237002 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8.708015412 8.652876948 8.630218711 8.672283231 8.685723244 8.357183238 8.898447534 8.752259468 7.959740508 8.634455576 8.93618551 8.32249535 221534612 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 9.226300413 8.730843387 8.24468571 8.265664721 8.146847008 8.335448487 8.123113333 8.32855567 8.155728527 8.105001855 8.384080074 114704565 gyrB other category gyrB Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 8.194597896 8.185366597 7.874890079 8.196470676 8.443329813 7.899554327 8.336192358 8.376884565 8.009816165 8.360671763 7.863100194 114740570 ppx Phosphorus Phosphorus utilization Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 8.305921809 8.636670644 8.499359537 7.92970688 7.975438666 7.868096935 7.294257067 7.327389866 7.706645216 7.380383978 8.015985972 115516578 bclA Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.48374965 8.418238514 8.51293033 8.355554562 8.392566053 8.161527524 8.02320578 8.315433856 8.53576556 8.034278423 7.855850553 8.000394702 73476100 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 8.682430293 8.744969172 8.742341834 8.052960312 7.746150207 8.374108436 8.642154509 7.967294107 8.580297202 8.355430322 8.728230479 8.284540096 40062872 bphD Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 442 superkingdom:Bacteria; 8.540544111 8.572733753 8.592079646 8.058920236 7.960790783 8.026767535 7.701810758 7.415242766 7.944570718 7.715390964 7.906230545 8.150580481 99083389 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.322739946 8.011499275 8.351373778 7.470108148 7.403852144 7.354400053 7.033491135 7.109350071 7.497241513 7.278907804 7.145721333 7.516475547 69287553 ara Carbon cycling Carbon degradation Hemicellulose Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 8.301003995 8.262766151 8.173568349 8.585205884 8.346886024 8.275567586 7.930976834 8.133167176 8.11119463 8.156520057 8.183790351 8.089414593 54018931 TehB Metal Resistance Tellurium Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 9.266942229 9.098557092 9.219457415 8.996125112 8.822772308 8.695127323 8.813453838 9.164371681 8.741706793 8.806899955 8.767971682 9.116516499 37675778 hly virulence hemolysin Vibrio vulnificus YJ016 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 8.68898132 8.609403274 8.368146902 8.229125147 8.305841205 8.172111733 7.971505169 8.400025678 8.255926621 8.021371858 191162597 cytochrome Energy process Energy process Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 9.721007729 9.75108564 9.670461502 9.107523172 9.722009092 9.698902324 10.11994584 9.020689209 10.16659057 9.512306746 9.292129613 9.605201395 194346732 iro virulence Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 8.444444803 8.060183456 8.3279734 8.203275014 8.045735315 7.890422027 8.312440228 8.068142846 8.005132344 8.217038849 7.934072748 227988147 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 8.888636768 9.113905282 9.156266855 8.654379924 8.642630703 8.558522243 8.144408406 8.336435985 8.429110772 8.384364957 8.286352954 8.624600596 82948437 hrcA Stress Heat shock Magnetospirillum magneticum AMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 8.296347526 8.470567914 8.642506023 7.947409275 8.310479286 8.592712461 8.47162102 8.348823007 8.531267184 8.107948224 8.330416607 8.178162328 70906158 bphC Organic Remediation Aromatics Polycyclic aromatics Rhodococcus erythropolis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.415114373 8.614543258 8.567406809 7.546721718 8.172267152 8.250631635 8.782787543 7.661748598 8.656354513 8.123039137 8.20855183 8.089504827 16609998 fnr Stress Oxygen stress Streptomyces sp. EC3 9.534621823 9.668104092 9.457219012 9.566575848 9.839051178 9.517349726 9.646930808 9.952578986 9.747997382 9.879956121 9.578508264 9.796700384 139003319 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.427013916 8.390051136 8.39062525 8.264864044 8.34576558 8.259471028 8.301957397 8.404051282 8.271590285 7.979781751 8.213933983 262308325 Mex Antibiotic resistance transporter Acinetobacter lwoffii SH145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter lwoffii; 8.391526679 7.916994984 8.424207264 7.635593679 7.578002487 7.469063445 7.805332419 7.520317695 8.220347171 7.685078421 7.544562098 7.386763687 184196421 MFS_antibiotic Antibiotic resistance transporter Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.992852984 7.993878827 7.390715278 7.385803615 7.997236444 8.101459796 7.541101678 8.175583689 7.781161992 7.711249505 7.808732981 55980675 CopA Metal Resistance Copper Thermus thermophilus HB8 9.377852744 9.250627988 9.4808822 8.736066662 8.685646324 8.649111387 8.132801408 8.068940671 8.570338038 8.730670468 8.615568184 8.862618977 262334437 endochitinase Carbon cycling Carbon degradation Chitin Rhodothermus marinus DSM 4252 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 8.250417356 8.457478274 8.322338491 7.712960011 7.642659426 7.910503556 8.208979257 7.728573431 8.430927356 7.750270122 7.832298794 7.826374611 198275725 pcc Carbon cycling Carbon fixation Bacteroides plebeius DSM 17135 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides plebeius; 9.254691083 9.146389807 9.344609265 8.538606911 8.519382748 8.532182459 8.537656443 8.361188623 8.44498533 8.42882123 8.472095054 8.720568541 70930925 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.436756143 8.487011266 8.332739364 8.46906257 8.523648957 8.537882577 8.75632194 8.415009045 8.636034747 8.631016548 8.90436046 8.768877697 111060190 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 8.725874036 8.609029593 8.492474869 8.157380203 8.156168999 8.303248951 8.286043039 8.298135275 8.50248489 8.02627889 8.071876026 8.079267515 115402751 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 9.521526019 9.618187664 9.769430704 9.336052102 9.396367449 9.223672539 9.353761658 9.445690457 9.316586179 9.672088659 9.597134466 9.517503482 145222137 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.813168227 8.611233765 8.198905004 8.483720996 8.509971104 8.797768433 9.093639008 8.541168759 8.496165045 8.498428849 8.637727584 8.325401639 78223278 pimF Organic Remediation Aromatics Aromatic carboxylic acid Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 8.503370023 8.592660984 8.613247501 8.438685836 8.277198809 8.1479725 8.245740143 8.534181181 8.340369427 8.22964398 8.053941446 8.263763494 145254229 nagI Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8.220222991 8.343685497 8.426666746 8.034649726 7.9995066 7.952083097 7.780925915 8.04447533 8.250069979 8.245521729 7.866485763 7.974892734 193087371 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Chloroherpeton thalassium ATCC 35110 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chloroherpeton;species:Chloroherpeton thalassium; 8.577456665 8.432275152 8.482472472 7.651575726 7.715166252 7.795596603 7.636428484 7.746540088 7.812114289 7.575165878 7.411027237 7.637353503 62149208 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.733254878 8.602704078 8.879227243 8.129569343 8.274718885 8.050306473 7.799492808 7.645079265 8.181529045 7.725734377 7.814273778 8.091835814 38427058 narG Nitrogen Denitrification uncultured bacterium 8.565363455 9.236543696 9.072257624 8.746041218 8.710381858 8.746672047 8.768962924 8.414089992 9.104090622 8.474577927 8.307506985 8.640381555 156864227 ChrA Metal Resistance Chromium Clostridium sp. L2-50 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 8.259080996 8.336774137 8.597286233 8.270912357 8.437860746 8.235010346 7.924009535 8.425020805 8.055113239 8.202635913 8.29217765 8.4598902 227428545 AceA Carbon cycling Carbon degradation others Xylanimonas cellulosilytica DSM 15894 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Xylanimonas;species:Xylanimonas cellulosilytica; 8.998818648 8.950613723 9.318901221 8.565196204 8.422632825 8.389352179 8.644278613 8.683495849 8.637381086 8.677680766 8.616448134 8.793123564 240102265 pstC Stress Phosphate limitation Thermococcus gammatolerans EJ3 9.339795603 9.246397425 9.163822695 9.442359522 9.464973128 9.203820983 8.954367485 9.558392633 9.031469378 9.410177246 9.122778503 9.473470605 167035719 dnaK Stress Heat shock Pseudomonas putida GB-1 9.584005202 9.413892036 9.149399023 9.487837683 9.425382565 9.199689947 9.339659882 9.325569343 9.19893542 9.322282178 9.460029128 8.894825929 20136445 B_lactamase_C Antibiotic resistance Beta-lactamases Escherichia fergusonii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 8.711746639 8.573442974 8.736926427 8.272941 8.788137293 8.623222792 9.071309275 8.724806485 8.50351806 8.470586398 8.756688477 8.581784342 227505989 katE Stress Oxygen stress Corynebacterium striatum ATCC 6940 8.461301545 8.468881639 8.55869193 7.880352028 7.831473561 8.00239962 7.926112326 7.544969996 8.46795021 7.707986866 7.82311532 7.692718586 89349355 nagG Organic Remediation Aromatics Aromatic carboxylic acid Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.278334081 8.075359347 8.571392162 8.178709901 8.015190113 8.093947491 7.546026473 8.054128822 8.104306074 7.67091555 8.009038816 7.962418676 88703740 CopA Metal Resistance Copper gamma proteobacterium KT 71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 8.569373325 8.027139484 8.268936551 8.312209621 8.006239753 8.123591328 7.879024754 7.935075322 7.997498375 7.806850389 192293511 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.859220104 9.002679919 8.413997547 8.715169526 8.640839429 8.918799765 9.091741452 8.854185559 8.89510134 9.196472343 9.109427789 9.04076144 126641532 nmoA Organic Remediation Aromatics Nitoaromatics Acinetobacter baumannii ATCC 17978 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 9.104712474 9.068783076 9.26210912 8.35826562 8.354170461 8.378514418 8.353267576 8.010546912 8.429211548 8.222563378 8.228274674 8.617108081 125861399 TehB Metal Resistance Tellurium Methanoculleus marisnigri JR1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanoculleus;species:Methanoculleus marisnigri; 8.638776626 8.6011149 8.775953485 8.162815293 8.018709651 8.03536539 8.331991885 7.926499719 8.382259232 8.002491232 7.907320405 8.064719683 53757474 obgE Stress Radiation stress Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 8.366093517 8.232968507 8.159735668 8.559141744 8.35683092 8.373027458 8.564477474 8.355157749 8.123296217 7.848315927 8.119030435 7.733709158 144899578 fnr Stress Oxygen stress Magnetospirillum gryphiswaldense MSR-1 9.19587125 9.2454324 9.274339991 8.674127066 8.521278798 8.535546118 8.879110084 8.272056102 8.571572636 8.788534214 8.763501708 256392887 amyA Carbon cycling Carbon degradation Starch Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 8.630971571 8.823597677 8.784665899 8.570668634 8.565996732 8.390522107 8.98467385 8.688771899 8.552494073 8.841629033 8.933129239 8.717646515 225042218 sigma_24 Stress Sigma factors Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 8.308969823 8.54899713 8.360494807 8.06912645 8.07702732 8.086550843 8.104563519 8.326171724 8.189742438 8.721788516 8.3068124 8.408058396 126618342 gyrB other category gyrB Cyanothece sp. CCY0110 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.450193847 8.727377748 8.716981844 8.110895145 7.904392313 7.965619375 7.695151377 7.397869688 8.055844171 7.615221046 7.658387447 7.957495137 33391359 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.555624997 8.530307412 7.939548114 8.409083314 8.313958764 8.571045299 8.353978748 8.237963596 8.209777466 8.49423605 8.596014145 32141278 xylanase Carbon cycling Carbon degradation Hemicellulose Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.450430204 9.032503836 8.596364473 9.233420803 8.909123527 8.570341526 8.834821274 8.813422023 9.073772001 8.785500138 8.469425988 8.553385285 238761943 katE Stress Oxygen stress Yersinia kristensenii ATCC 33638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia kristensenii; 8.690091121 8.743062739 8.869722306 8.258401619 8.418202955 8.769537048 7.67534753 8.566774597 8.201355722 8.3699837 8.270996732 52350346 fnr Stress Oxygen stress Bacillus licheniformis DSM 13 8.103956013 7.676382211 7.063416967 6.99601047 7.289229924 94309058 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 7.73284067 7.308855018 7.120274735 7.416999283 7.041269675 7.152965818 6.957247997 88813973 glnA Stress Nitrogen limitation marine actinobacterium PHSC20C1 8.252302227 8.376626292 8.187980819 8.882763608 8.857799908 9.015032274 8.055914371 8.825265541 8.233780288 8.403697338 8.891849091 115421988 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 8.101709581 7.778472135 7.333216433 7.379524662 7.561252898 7.024597391 7.057096366 7.039226729 7.38218567 6.962191076 116248777 Catechol Organic Remediation Aromatics Other aromatics Rhizobium leguminosarum bv. viciae 3841 9.765679338 9.651454459 9.910945339 9.274143169 9.153018128 8.94433993 9.069788822 9.127810722 8.888584248 9.140521626 9.129636111 9.36081954 67532411 ChrA Metal Resistance Chromium Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 9.839922696 9.761746137 9.87219281 9.38281173 9.253302243 9.124339229 9.611721361 9.226900773 9.831222721 9.115371501 9.228733946 9.107447887 178463953 AceB Carbon cycling Carbon degradation others Streptomyces griseus subsp. griseus NBRC 13350 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 9.952127969 9.904799326 9.888229285 9.264202068 9.289586247 9.344250351 9.201711722 9.128814368 9.188505315 9.232330999 9.283108716 9.363208858 86606034 glnA Stress Nitrogen limitation Synechococcus sp. JA-3-3Ab 8.838725851 8.948945639 9.050867746 7.791464323 8.101964258 7.905379732 8.126227644 8.39903303 8.18994307 8.44445078 8.390871935 8.42120318 172040581 sigma_70 Stress Sigma factors Corynebacterium urealyticum DSM 7109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium urealyticum; 8.252765195 8.149707765 7.704574623 7.555055492 7.729622742 7.675297042 7.427667264 8.336854069 7.279281744 7.453475893 7.435290704 90654477 glucoamylase Carbon cycling Carbon degradation Starch Chaetomium thermophilum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium; 8.19099392 8.147752092 257085000 pstB Stress Phosphate limitation Enterococcus faecalis Fly1 8.190589048 8.469768709 7.260611597 7.346487443 154161550 pstB Stress Phosphate limitation Xanthobacter autotrophicus Py2 8.378904542 8.490042795 8.304826149 8.194876814 8.055781857 8.25928171 8.695251932 8.40478577 8.545946523 8.288727175 8.494128417 77733980 SMR_antibiotics Antibiotic resistance transporter IncP-1beta multiresistance plasmid pB8 8.64777615 8.784575219 8.691779781 9.316199495 9.242896971 9.259602106 9.205386809 9.525106588 9.029453516 9.295471235 9.284767807 8.704211675 146283697 cytochrome Energy process Energy process Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 8.200510736 8.183915545 8.365019526 7.584744219 7.468565816 7.636419122 7.524999951 7.199704234 8.053340989 7.54430937 7.504500998 7.525499658 219667647 dmsA Organic Remediation Others Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 8.692837091 8.125587564 8.492390292 8.047063642 7.761766983 7.594260425 7.626090938 7.481815548 8.114741883 8.00388963 7.833926242 7.785167413 56314735 pimF Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 8.748738676 9.085962028 8.810301345 8.475014004 8.321902427 8.781338184 9.022382673 8.628789636 9.137142151 8.53601784 8.442628588 8.45349676 219677225 linB Organic Remediation Pesticides related compound gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 9.139295873 9.047846126 9.110300925 8.546365061 8.489092942 8.540789037 8.340929965 8.352483512 8.377595391 8.421715756 8.560435899 8.700706332 179346821 CopA Metal Resistance Copper Methylobacterium populi BJ001 9.486612372 9.49564365 9.356791293 9.108088209 9.213466746 9.178995153 9.365468928 9.252621983 9.201908447 9.407066017 9.530526682 9.577931753 152971068 MFS_antibiotic Antibiotic resistance transporter Klebsiella pneumoniae subsp. pneumoniae MGH 78578 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 9.272986023 8.745598483 8.395237631 8.911697113 8.867885337 8.943310251 8.331111185 8.994639263 8.679857391 9.000949861 9.068278087 8.530223393 227533945 ctsR Stress Protein stress Lactobacillus paracasei subsp. paracasei ATCC 25302 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus paracasei; 8.281747013 8.120577324 8.373596136 8.690186951 8.644964847 8.459466181 9.001500761 8.536618631 8.420355903 8.707606142 15896888 CopA Metal Resistance Copper Clostridium acetobutylicum ATCC 824 8.473153938 8.493985373 8.507564084 7.751009889 7.912163291 7.734238181 7.644566083 7.738961395 8.098430495 7.657455921 7.759061321 7.973089573 157679473 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.139793539 8.020222187 7.827451264 7.816199962 7.614071043 7.716925727 7.911437531 8.129239923 8.110738504 8.213391438 56461677 oxyR Stress Oxygen stress Idiomarina loihiensis L2TR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina loihiensis; 11.11839024 11.14115613 11.04175574 11.07777876 10.79644268 10.78205904 10.94933203 10.83722124 10.93720371 11.19952178 11.15102729 11.05769762 146337831 fnr Stress Oxygen stress Bradyrhizobium sp. ORS278 8.645771667 7.914010561 8.496935237 8.370326149 8.342169049 7.928897278 8.438886699 8.47837741 8.213910268 8.240131609 7.788765323 260614748 GroES Stress Heat shock Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 8.587854287 8.957386665 8.697210328 8.54055949 8.338419444 8.544125473 9.120263404 8.460581473 9.082714029 8.529808731 8.675105407 8.394068624 61611847 glnA Stress Nitrogen limitation Delftia tsuruhatensis 9.158060275 9.015725453 9.317471856 7.707685312 7.925160263 7.951469353 8.614601072 7.76976575 8.402780671 7.54673348 8.16952633 7.898120307 119954449 chnB Organic Remediation Other Hydrocarbons Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 9.542205712 9.545625994 9.669169311 9.428731471 9.391738933 9.083195418 9.564870844 9.763571516 9.719486474 10.01738969 9.80828313 9.906818153 167644129 gyrB other category gyrB Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 9.164307213 9.178098203 8.771731765 9.158549146 8.926059354 8.928880058 9.28712474 9.185438732 9.22496534 9.100465574 8.953655228 9.069040211 63253817 nifH Nitrogen Nitrogen fixation uncultured Enterobacteriaceae bacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae; 8.160709986 8.074891524 8.192810499 7.704226733 7.627951493 7.570370277 7.593301969 7.597099209 7.940567611 7.556229933 7.431162458 7.583033163 109452509 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.222674494 8.470209778 8.14596478 7.698787006 7.806470525 7.511295714 7.989416958 7.905781013 7.554587956 121707184 phytase Phosphorus Phosphorus utilization Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 8.759634089 8.982146183 8.705909365 9.288894558 8.833190115 8.589409069 9.193967426 9.232445032 8.729251193 9.190886323 8.963930353 8.438494612 17223654 tutFDG Organic Remediation Aromatics BTEX and related aromatics Azoarcus sp. T superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8.25942844 8.371496316 8.072159806 8.402550581 8.772855307 8.962350643 8.728806496 8.705028833 8.65749529 8.730403038 8.972560493 83749132 ZntA Metal Resistance Zinc Ralstonia solanacearum UW551 8.761188004 8.538648284 8.879887546 8.429723466 8.453046065 8.544555969 8.594640323 8.596481176 8.710584173 8.556883198 8.501491437 8.514869799 270043665 endochitinase Carbon cycling Carbon degradation Chitin Serratia odorifera 4Rx13 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia odorifera; 9.282048063 9.164059776 9.179369536 8.696062206 8.772579016 8.840687042 8.985169406 9.192424382 8.991983127 9.24342334 9.268641782 9.149425421 256776489 sigma_24 Stress Sigma factors Streptomyces hygroscopicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces hygroscopicus; 9.368968701 8.646019099 9.074693407 8.042854652 8.247178042 8.485176842 8.575695599 7.817734288 9.060392878 8.078601886 8.261682231 8.298217705 229565886 amyA Carbon cycling Carbon degradation Starch Beutenbergia cavernae DSM 12333 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Beutenbergiaceae;genus:Beutenbergia;species:Beutenbergia cavernae; 8.706102084 8.830417882 8.228309714 8.148924852 8.072921559 8.232704847 8.293870613 8.226882482 161787988 ArsC Metal Resistance Arsenic Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 9.529034421 9.268779784 9.416055416 9.04718342 8.968208064 8.889477521 8.830085251 8.873864671 8.728874723 9.12535713 9.040541364 9.155739765 119504491 nahA Organic Remediation Aromatics Polycyclic aromatics marine gamma proteobacterium HTCC2080 8.483798644 8.42527033 8.296845668 8.677967882 8.752763222 8.560865266 8.38233325 8.904752146 8.598145295 8.6726898 8.61309858 8.638285377 154158832 mer Metal Resistance Mercury Xanthobacter autotrophicus Py2 8.266346931 8.237853926 8.195986083 8.043255053 8.186717477 8.09085799 8.273572581 8.072785782 8.21122938 8.140718626 7.953656246 8.062080472 19909633 gyrB other category gyrB Roseobacter litoralis superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 8.940387588 8.514180094 8.822144258 8.044301956 7.880647115 8.077080029 8.029617216 7.923471482 8.251282463 7.662487417 7.654076401 8.104404311 256740399 pilin virulence pilin Thiomonas intermedia K12 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas;species:Thiomonas intermedia; 8.990678889 9.092991949 8.948911701 8.741739582 8.753193952 8.608404528 8.392125698 8.829132022 8.664955506 8.838222688 8.883915508 8.469602949 256688380 cap virulence capsule Kytococcus sedentarius DSM 20547 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermacoccaceae;genus:Kytococcus;species:Kytococcus sedentarius; 8.266036316 8.154513788 8.205888334 8.388564129 8.115310483 8.701309713 8.393223604 154157964 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 8.202160294 8.191888127 8.073578601 8.247574762 8.152453852 8.172162108 8.572005835 8.450421418 8.230703007 157850598 nahA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 8.484582043 8.082084273 8.087129526 8.17586211 8.031944865 7.544040151 8.303838688 8.192140348 8.145795946 7.925129688 8.116349978 53759164 AceA Carbon cycling Carbon degradation others Paracoccidioides brasiliensis superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides; 8.059650393 8.265055325 8.202764822 7.622134801 7.443701087 7.674602671 8.327421207 8.158722451 8.46024247 7.848822794 8.120110106 7.956263665 227194817 nplT Carbon cycling Carbon degradation Starch Lactobacillus ruminis ATCC 25644 8.037523793 8.269367064 8.323009872 7.518079703 7.574613229 7.487457101 7.021821517 7.001878016 7.259673659 7.233834758 7.5405279 148253317 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.255435823 8.196992721 8.440211442 8.418206419 8.178347155 8.404778688 8.156086986 8.467876975 8.320430764 8.46353374 8.133874277 8.218536711 253983760 hrcA Stress Heat shock Methylotenera mobilis JLW8 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylotenera;species:Methylotenera mobilis; 8.083554105 7.823615722 7.440778837 7.342660314 7.211771877 7.225347647 7.635288164 7.287448982 6.968621728 7.110999768 62131454 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 8.430791363 8.290987842 7.492119149 7.745934282 7.896474863 7.812176789 7.532296491 8.056827342 7.628735957 7.494328864 7.753736915 269211661 srt virulence surface protein Actinomyces sp. oral taxon 848 str. F0332 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 848; 9.212167479 9.184457602 9.225658967 8.813772552 8.590090607 8.560917031 8.497203979 8.582334758 8.430524682 8.597139334 8.60196344 8.945424516 3157632 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 8.23072941 7.931457112 7.478216797 7.469171694 7.656394473 7.591280371 7.252512628 8.071952136 7.496013645 7.255921918 7.482718256 229565019 fnr Stress Oxygen stress Beutenbergia cavernae DSM 12333 10.42461926 10.41674641 10.37069348 9.879862138 9.819449043 9.709956888 9.788229926 9.415477909 10.37210501 9.7989702 9.970910095 10.05649324 126717504 glnA Stress Nitrogen limitation Roseobacter sp. SK209-2-6 8.787157238 9.072764465 9.101948823 8.312193024 7.998976339 8.418710548 8.401711686 8.104825976 8.549552607 8.133942307 8.216690289 8.368812498 227497034 pstB Stress Phosphate limitation Actinomyces urogenitalis DSM 15434 8.749646485 8.647197477 8.325880729 8.29941651 8.205007059 8.092968528 8.109615179 8.541392442 8.301021084 8.326694942 8.51415123 8.247340782 46096526 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Ustilago maydis 521 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Ustilaginomycetes;order:Ustilaginales;family:Ustilaginaceae;genus:Ustilago;species:Ustilago maydis; 9.637080228 9.385158489 9.329450628 8.427165149 8.79498499 9.052147298 9.473970635 8.493504199 9.315892358 8.494565705 8.865660632 8.510539937 119671055 ArsC Metal Resistance Arsenic Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8.988335398 8.819925509 8.795503808 9.190070722 9.243183347 8.864744143 9.454560601 9.405921782 9.061984954 9.076572928 9.486003239 8.818078915 187426600 katE Stress Oxygen stress Akkermansia muciniphila ATCC BAA-835 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Akkermansia;species:Akkermansia muciniphila; 8.560748004 8.147573966 7.752174259 7.658274741 7.461329311 7.12667596 7.18138477 7.619769269 55229190 CopA Metal Resistance Copper Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 8.95186869 8.817346418 8.707363241 8.35104612 8.285498839 8.175668615 8.057971995 8.254009542 8.327096999 8.15857881 8.041815767 8.369271343 146277281 SMR_antibiotics Antibiotic resistance transporter Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 8.598996499 8.314781318 8.180872825 8.174511347 8.407400181 8.452515304 8.229705506 8.422795923 8.368333408 8.475483462 8.2890016 151562371 mer Metal Resistance Mercury Ochrobactrum anthropi ATCC 49188 8.371834941 8.039765507 8.609854528 8.419104456 8.1846234 7.887936752 7.865235242 8.086151991 8.33084612 8.435153884 8.347735469 8.404013056 115365508 pimF Organic Remediation Aromatics Aromatic carboxylic acid Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 8.505425317 8.203467711 8.258109488 8.272105304 8.096969695 7.999511286 7.895610828 7.959424562 8.11096191 7.990240519 7.897993706 7.946733793 86573237 CODH Carbon cycling Carbon fixation Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.128548999 9.134313669 9.1167013 8.624537042 8.626002486 8.452747302 8.700736595 8.813703959 8.807168159 9.019178938 8.853438059 8.981560681 83591613 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 9.239711349 9.187005978 9.088220579 8.718386477 9.035447324 9.121284425 8.844455745 8.696834725 9.158671317 8.966448096 9.310523939 9.157948505 77164105 pstB Stress Phosphate limitation Nitrosococcus oceani ATCC 19707 8.262407364 7.991492833 7.083848298 7.189819806 7.302491871 7.587347354 6.882307981 7.426062641 7.270860817 7.098582063 7.298165006 115364803 katE Stress Oxygen stress Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 8.678177932 8.878454432 9.107925311 8.76463881 8.783212861 8.514199443 8.570966566 8.983237818 8.544651763 9.064669582 9.004137819 8.82947554 149912897 hrcA Stress Heat shock Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 9.129854842 8.968669336 9.042585047 8.446624081 8.241611928 8.291562783 8.871162799 8.357824687 45358661 pstB Stress Phosphate limitation Methanococcus maripaludis S2 8.306662745 8.387688459 7.240094079 6.900583872 7.26642482 188020644 AmiE Organic Remediation Aromatics Other aromatics Providencia stuartii ATCC 25827 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia stuartii; 8.06617914 8.250265062 6.627928708 7.070735766 6.743548801 6.873796435 227950406 sigma_70 Stress Sigma factors Meiothermus ruber DSM 1279 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 8.79564701 8.807304361 8.758696181 8.325544457 8.32075967 8.409280797 8.525876396 8.430616823 8.561235519 8.426610107 8.355891559 8.569833051 2632980 opuE Stress Osmotic stress Bacillus subtilis subsp. subtilis str. 168 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 8.501679459 8.487178377 8.353601139 8.019321373 7.927059657 7.85872341 7.759217308 7.477393361 7.665474101 7.758405686 7.908145642 255924150 fnr Stress Oxygen stress Actinosynnema mirum DSM 43827 8.324005055 8.540775468 8.407040595 8.513389781 8.416367275 8.091151231 8.156496382 8.309266765 8.257617043 8.637363151 8.619497265 8.7885587 194366948 pilin virulence pilin Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 9.036520439 8.596541184 8.723838736 8.755543326 8.735868256 8.342142174 8.618095629 8.740681744 8.770487317 8.753731328 8.675244115 8.685980531 49610127 TerC Metal Resistance Tellurium Erwinia carotovora subsp. atroseptica SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 8.260112745 8.187106906 8.000245369 8.449458847 8.541306454 8.17708803 8.356816656 8.360287622 8.425464185 8.894902795 8.348123374 2632019 catB Organic Remediation Aromatics BTEX and related aromatics Bacillus subtilis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 8.735897698 8.450453421 8.851110725 8.417604517 8.284243777 8.213325881 8.348598798 8.322022222 8.361852496 8.396348576 8.286941435 8.449731313 68135557 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.021561057 8.166105252 8.260890132 7.733283876 7.713614044 7.787522865 7.644778256 7.59997255 7.96666903 7.722061166 7.636314476 7.769245974 47827047 mcrA Carbon cycling Methane Methane production uncultured Methanosarcinales archaeon superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales; 7.349463448 7.51373304 7.512427051 7.465230105 7.854297008 7.791726862 7.781032617 7.842312454 7.372077529 237759553 sigma_24 Stress Sigma factors Corynebacterium kroppenstedtii DSM 44385 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium kroppenstedtii; 8.75653144 8.985220664 8.880748171 8.613722986 8.680505797 8.606708209 8.963495653 8.889221341 8.984948984 8.889762326 8.844592816 9.015621723 145241722 hdnO Organic Remediation Aromatics Heterocyclic aromatics Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8.885271025 8.786027325 8.727064044 8.106307643 8.168948679 8.59606582 8.954775679 8.660456742 8.38955028 8.550333703 8.593156191 8.677960009 119473513 nagG Organic Remediation Aromatics Aromatic carboxylic acid Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 8.674312326 8.72835744 8.491755851 8.135561894 7.734345109 8.670970115 8.678791678 8.32218303 8.962456805 8.387975167 8.379643904 8.295100246 145223139 pcc Carbon cycling Carbon fixation Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 9.913400745 9.809219812 9.762380804 10.25880826 10.2149656 9.980264168 9.89039296 10.28408579 10.04475591 10.0456126 9.96760021 10.07968641 94311542 sigma_70 Stress Sigma factors Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 9.518609483 9.464728999 9.244678026 9.093589584 8.973207074 8.702577294 8.856552435 9.090326217 9.124445396 9.196147316 9.306687551 9.297770728 15840397 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium tuberculosis CDC1551 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 7.528671233 7.612075243 7.884131758 7.79414758 7.156284679 7.903264367 7.536467992 7.605352933 15610605 akbF Organic Remediation Aromatics BTEX and related aromatics Mycobacterium tuberculosis H37Rv 8.350358581 8.140745143 8.646007782 8.110632497 7.663180006 7.916145029 7.415804598 7.728962911 7.468003212 7.559076287 7.805447114 74038394 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.869270189 8.666883723 9.008250981 8.808396687 8.697569544 8.702983286 8.658032893 8.810829249 8.72041075 8.766128564 8.864192664 8.426578246 117982816 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.262845291 8.214456719 8.030233477 7.760092751 7.525850482 7.826677226 7.814903666 7.832913376 7.794057151 8.037090202 7.972779111 111025701 pcc Carbon cycling Carbon fixation Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 9.178233495 9.286889646 9.272705937 8.16424658 8.699606798 8.661122676 9.028329847 7.960934209 8.990633379 8.21517773 8.509441632 8.390171257 119668799 oxyR Stress Oxygen stress Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8.426936154 8.53603264 8.353445665 7.989957811 8.7291498 8.945535417 8.711328453 8.894320281 8.503990505 8.51324683 8.213175376 144900614 ArsC Metal Resistance Arsenic Magnetospirillum gryphiswaldense MSR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 8.852551946 8.806163772 8.715771883 8.117426133 8.411391464 8.577102569 8.058153781 8.28944705 8.153291884 8.109076521 8.167217949 84693251 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 10.50864959 10.26466781 10.32272991 10.17002594 10.21212782 10.00305871 10.05877898 10.57467078 10.06251722 10.42216882 10.42812358 10.4785435 38479650 rubisco Carbon cycling Carbon fixation Magnetospirillum magnetotacticum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum; 8.137660872 8.33490957 7.90091041 7.705549087 7.545104039 7.412830807 7.604046086 7.534566445 7.545000485 7.614550628 133909785 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 8.281623363 8.420463927 8.238808518 8.005379754 8.575823218 8.068811678 8.40277869 8.385882877 8.50551524 99083137 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 9.280395148 9.136239438 9.30754683 8.620702508 8.642818042 8.575359832 8.645856971 8.57079498 8.764487496 8.840132011 8.774073855 8.75858381 69957073 B_lactamase_A Antibiotic resistance Beta-lactamases Pseudomonas aeruginosa superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.37942119 8.227083677 7.752268098 7.715261274 7.715656356 7.544031967 7.851265795 7.805072565 206676012 pheA Organic Remediation Aromatics Other aromatics Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.591489995 7.443454232 7.242488859 7.098560504 7.374833224 7.197881901 7.405712874 150036102 sox Sulphur Sulphur oxidation Ectothiorhodospira mobilis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Ectothiorhodospira; 8.043069764 8.226348007 8.130220113 7.88054735 7.58230997 7.735208875 7.91158699 7.42422187 8.123580022 7.436225983 7.400141879 7.426888231 190994564 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.516618932 8.55343794 9.081247592 8.241647559 8.258187927 8.183896857 8.038739811 8.065919788 8.213529047 8.017429599 8.003381966 8.270394405 163702066 pbrA Metal Resistance Lead Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 8.829691905 9.057243007 8.946100632 8.733684832 8.8122278 8.254771506 8.411949366 8.495229864 8.795581973 8.610213246 163119336 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 9.480915031 9.417641596 9.360826898 9.344162676 9.277997498 9.112850999 9.45409857 9.261229957 9.276437265 9.530829611 9.580518903 9.307628709 54026525 narI Stress Oxygen limitation Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 10.41996306 10.57339906 10.3355867 9.933198293 10.7165462 10.79945687 10.61493273 10.69738741 10.34144342 10.35360575 10.36632546 170721899 nitA Organic Remediation Aromatics Other aromatics Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.726661947 8.855755748 8.856195933 8.530665631 8.40856901 8.505123051 8.771558607 8.916605931 9.501514874 9.241071233 8.872399989 133915722 aclB Carbon cycling Carbon fixation Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 8.491127166 7.973594593 8.647811994 7.853415946 7.134335017 8.14700592 8.221076068 7.561307215 7.925363969 7.882506561 7.738414534 177839347 mer Metal Resistance Mercury Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 9.452764758 9.637260125 9.872938727 9.780178111 9.887136057 9.640911992 9.740240928 9.926241116 9.872326184 9.979291821 9.969940768 9.655328823 219949705 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 9.479208844 9.504626969 9.304146832 9.344477282 9.837505516 9.8443991 10.14602181 9.788580075 9.620720968 9.350147457 9.778746519 9.788893607 74057795 APS_AprA Sulphur adenylylsulfate reductase Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 8.593294596 8.592632799 8.709271237 8.213279324 8.355922094 8.451818143 8.69557229 8.304998485 8.769799304 8.322494356 8.250139145 8.259638846 147886084 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 9.014690824 8.720255803 8.985838952 8.681233829 8.604447045 8.442661273 8.320068328 8.774893178 8.404328343 8.666227524 8.456828795 8.819936593 116091820 obgE Stress Radiation stress Oenococcus oeni PSU-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Oenococcus;species:Oenococcus oeni; 8.274627748 7.952256618 7.630992943 7.948777224 8.246886029 7.944380065 8.275140016 8.109462129 7.850272254 8.133090409 8.067600755 91769806 CopA Metal Resistance Copper Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 8.05666404 8.403419251 8.571876525 8.176508779 8.230235912 8.027369343 8.063912129 8.386587107 8.112162983 8.055796888 8.019858646 7.762918277 190688666 ara Carbon cycling Carbon degradation Hemicellulose Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 7.798574031 7.55869702 7.934660692 7.750639719 7.75507115 7.628088542 7.268064152 162568543 aoxB Metal Resistance Arsenic uncultured bacterium superkingdom:Bacteria; 8.445420822 8.311607931 8.472895155 7.954255219 8.162016438 8.190437603 7.855332787 8.30769118 8.153323738 8.355550769 8.332431652 8.28790819 145015306 katE Stress Oxygen stress Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 8.370482682 8.375233366 8.781390213 8.29272452 8.238924712 8.181464483 8.136377504 8.536744746 8.38964033 8.196340009 8.132740736 8.40945038 219870531 toxin virulence toxin Haemophilus parasuis SH0165 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus parasuis; 8.784900421 8.664501615 8.806670294 8.454217008 8.184307394 8.111390227 7.877685418 8.030315768 8.407128947 8.053965705 7.984887662 8.291626118 93354021 bclA Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 9.294551371 9.340630594 9.000868179 8.939291176 8.670916833 8.763989276 9.163566408 8.882545754 8.832959656 8.84161008 8.814476516 8.876527867 256757650 sigma_24 Stress Sigma factors Thiomonas intermedia K12 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas;species:Thiomonas intermedia; 8.665529066 9.050975041 8.669145021 8.017681944 8.316134801 8.87559117 8.534279532 9.005920465 8.370659132 8.323929974 8.5601705 226241022 CDH Carbon cycling Carbon degradation Cellulose Rhodococcus opacus B4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 7.994558864 7.95994569 7.901815815 7.152897901 7.146824528 7.51191107 7.602442154 6.613377958 7.979149524 7.102563246 7.065799557 7.360486075 197714150 HBH Organic Remediation Aromatics BTEX and related aromatics Streptomyces sviceus ATCC 29083 9.479661302 9.470147163 9.459719657 8.975058535 8.767051387 8.763267232 8.952493472 8.768969658 9.035581852 8.681650828 8.709297977 8.908352142 157322506 pcaG Organic Remediation Aromatics Other aromatics Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 7.267841529 7.13695502 7.409349053 7.041590492 6.768220554 7.698922448 7.263107022 7.346362897 109456619 AceB Carbon cycling Carbon degradation others Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 9.084094768 8.824119755 8.903669999 8.687922375 8.460070773 8.674402772 8.50338705 8.656915733 8.541084708 8.799282036 8.822050034 8.367217423 108764331 nitA Organic Remediation Aromatics Other aromatics Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 7.069245026 6.965043816 240171610 pcc Carbon cycling Carbon fixation Mycobacterium kansasii ATCC 12478 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 9.874997524 9.080220334 9.26448222 9.153647886 9.336218461 91687242 fnr Stress Oxygen stress Burkholderia xenovorans LB400 8.266372298 7.939748652 8.199301865 7.918907086 7.830316487 7.507834783 7.636162639 8.231173618 8.022698506 8.119786001 7.874659413 8.074551033 158110579 tfdA Organic Remediation Aromatics Chlorinated aromatics Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 9.523158678 9.451242279 9.188837525 9.023079353 8.937103635 8.681828196 8.860660406 9.102506123 9.126336659 9.095427548 9.095046469 8.94174013 209965070 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 8.826115666 8.765714217 8.899085816 8.609520265 8.705618292 8.478796101 8.592221185 8.971160856 8.605493218 8.888386442 8.776237541 8.836735762 214030554 CopA Metal Resistance Copper Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 9.17953308 8.963225595 8.991142644 8.25350284 8.358728369 8.094441854 7.823302077 7.911789363 8.511956582 8.015083942 7.924173839 8.175129255 34102575 CopA Metal Resistance Copper Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 11.45689884 11.47264715 11.2945849 10.77038776 10.68136308 10.774553 10.83539622 10.38656236 11.12024782 10.91098458 10.97338731 10.84234811 77384702 4HBH Organic Remediation Aromatics BTEX and related aromatics Pseudomonas fluorescens PfO-1 9.00828035 9.034259202 9.107198491 8.336739376 8.460562263 8.402588725 8.49602401 8.866254344 8.662525229 8.887478551 8.672313865 8.82845383 241196301 ahpC Stress Oxygen stress Bifidobacterium animalis subsp. lactis DSM 10140 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 8.837442745 8.821915224 8.969095733 8.355095699 8.092785939 8.331331313 8.183140099 8.162642884 8.212561163 8.243484165 7.952457243 8.183490109 169828140 ArsC Metal Resistance Arsenic Lysinibacillus sphaericus C3-41 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Lysinibacillus;species:Lysinibacillus sphaericus; 8.280917409 8.180477472 8.064724124 7.395619833 7.273700954 7.516908377 7.299385651 6.685768471 7.513046738 7.232362929 7.498620918 7.784801263 114340342 glnA Stress Nitrogen limitation Maricaulis maris MCS10 9.084806671 9.108514907 8.83288643 7.918521217 8.026736507 8.832133098 8.959975488 8.494623837 8.842490722 8.994153934 8.951855793 84689378 AceB Carbon cycling Carbon degradation others Parvularcula bermudensis HTCC2503 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 9.016106085 8.781114734 8.545162729 8.847341951 8.674061561 8.558044054 8.674921097 9.009246227 9.020282222 8.948634043 8.788807309 8.840987695 162284183 pulA Carbon cycling Carbon degradation Starch Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 8.548839965 8.485331586 8.544689309 7.954154131 7.679747103 7.742076961 7.553004529 7.54885739 7.33773812 7.430573911 7.879747276 241759214 glnA Stress Nitrogen limitation Neisseria flavescens SK114 8.14619863 7.822465881 8.054241811 7.983963147 7.180130509 7.542422689 7.932440316 7.711536697 104781634 iro virulence Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 7.787927072 7.631720759 7.812623355 7.54824685 7.37173812 7.593145191 7.518921865 115516227 oxyR Stress Oxygen stress Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.82761021 9.135745194 9.058357627 8.507505216 8.853216982 8.993838038 8.728465609 8.812279235 8.668057076 8.562082965 8.730437959 163855173 alkK Organic Remediation Others Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 8.301209814 8.216576198 7.985777016 7.81390175 7.820010507 8.008335087 7.954081973 8.100894374 8.368653131 8.042942221 8.03057352 8.116514657 162568583 aoxB Metal Resistance Arsenic uncultured bacterium superkingdom:Bacteria; 9.268187452 9.083514377 9.412304472 8.351519994 8.28303561 8.169748485 8.193963469 8.437488832 8.323631475 8.232587781 8.244913977 145217785 alkB Organic Remediation Other Hydrocarbons Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.864076405 9.093383156 9.180156313 7.885626936 8.767292314 8.696279012 8.898087255 7.448554679 9.112931669 8.302576078 8.479808005 8.750706295 189425114 hydrogenase Energy process Energy process Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 8.956703298 9.058565032 8.790435421 8.560232303 8.868105895 8.965607585 9.163195861 9.040172294 9.354582513 9.31855583 9.406270716 145214433 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium gilvum PYR-GCK 8.941666647 9.351630158 9.141109911 8.786530683 9.18342216 9.197326372 9.4467496 9.56967854 9.523223317 9.477728605 9.263054212 9.46439743 67085133 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 10.75755451 10.61123644 10.41432096 9.990711876 9.746603973 10.14496952 9.933555176 9.532373518 10.39814969 10.14598375 10.4117818 10.30856477 59711178 pilin virulence pilin Vibrio fischeri ES114 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Vibrio fischeri; 8.295372194 7.943305184 7.427220227 7.115190473 6.839108323 7.114321639 114537780 mer Metal Resistance Mercury Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 8.616928567 8.593969621 8.221400241 8.975287125 8.887098612 8.809460045 8.465102675 9.284116587 8.394001824 8.847467304 8.904292466 8.911992832 149914010 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.875910896 8.571912111 9.170922939 8.100594057 7.988374433 7.914925618 8.171242916 8.097370918 8.707400151 8.164428127 8.336576234 8.108808951 227086882 obgE Stress Radiation stress Lactobacillus fermentum ATCC 14931 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus fermentum; 8.543401655 8.588152222 8.537852221 7.3576469 8.165898378 8.32009864 8.558282348 7.878664262 8.628339919 7.806283784 7.832620966 8.142115136 150918 ureC Nitrogen Ammonification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus; 8.216880965 8.205841255 8.40713819 8.37791565 8.593888366 7.530959393 8.611164966 8.01021204 8.340972609 8.387427056 7.914645729 68510354 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.024213473 8.415070716 8.351042658 8.564406326 8.406993851 7.857999189 8.379431243 8.105534941 8.636001926 8.245781215 8.229322795 8.013094927 89901639 pstB Stress Phosphate limitation Rhodoferax ferrireducens T118 9.416524147 9.543922506 9.147589044 8.772321862 8.974535377 9.09344388 8.850504912 9.040615955 9.218427171 9.069620486 9.242382947 8.956013249 145224137 SMR_antibiotics Antibiotic resistance transporter Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 9.380393744 9.345798155 9.393191479 9.066415969 9.046858523 8.739308945 8.836729626 9.084640922 8.820215532 9.070027733 9.012668396 9.189405626 110283534 ArsC Metal Resistance Arsenic Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 9.301318157 9.179989207 9.232205738 8.474655768 8.055453289 8.091900024 8.301478572 7.973458177 8.473286519 8.810099654 8.442923233 240266947 obgE Stress Radiation stress Bartonella grahamii as4aup superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella grahamii; 9.404122243 9.189934139 9.290676129 8.641922321 8.533251433 8.608971655 8.129996217 8.148406857 8.431734051 8.497109575 8.479826485 8.701829984 149200797 phn Organic Remediation Herbicides related compound Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 10.113134 9.86139711 10.09449496 9.146874207 9.374871539 9.572357772 10.00388239 9.131634229 9.999282314 9.696710362 9.409786661 9.812683781 170721785 exaA Organic Remediation Chlorinated solvents Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 9.178510666 9.181562014 9.122140114 8.471955618 8.235898703 8.563553662 8.53202225 8.329539322 8.543180717 8.269061754 8.497874861 8.49389311 153010483 mer Metal Resistance Mercury Ochrobactrum anthropi ATCC 49188 8.267893105 8.231656903 8.550068084 7.386781743 7.352351332 7.819796722 7.869127488 6.800476677 8.226043001 7.335441323 7.580596331 7.63224288 192824189 mycobacterium_LysB_lipase Bacteria phage LYSIS Mycobacterium phage Pukovnik order:Caudovirales;family:Siphoviridae; 8.147079274 8.140735313 7.89714261 7.797289005 7.881478608 8.245093089 7.965522324 7.770414065 7.854918884 7.54284335 88083778 tfdA Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 8.363362295 8.183585488 8.561613636 8.356807733 8.024691826 8.590072447 8.394167026 8.439373545 8.590577861 8.7049363 8.123617051 145572032 fnr Stress Oxygen stress Pseudomonas stutzeri A1501 9.07894414 9.316877841 8.810092103 8.63465021 8.886979005 9.161050363 9.470650888 8.992093403 8.73537423 8.52552416 8.806703607 8.578271832 114569032 pstB Stress Phosphate limitation Maricaulis maris MCS10 8.152665268 8.195400003 7.972225997 8.222081435 8.171158408 8.159309233 7.926027512 8.160764098 8.159258408 8.064730401 7.94515008 7.69977656 24461668 glnA Stress Nitrogen limitation Pseudomonas aeruginosa 7.277118068 7.189712673 7.722953924 6.989902601 6.969396169 7.275025832 119354217 pstB Stress Phosphate limitation Chlorobium phaeobacteroides DSM 266 8.605515768 8.242840049 8.499787749 7.772083049 7.781743739 8.029485593 7.879852214 8.311013495 8.213582661 8.128572844 7.898988209 218666490 hly virulence hemolysin Acidithiobacillus ferrooxidans ATCC 23270 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 8.704643393 8.491617518 8.686660851 8.106821529 7.943542309 7.943388989 8.015757464 7.694665514 8.466656849 7.824593235 7.64200283 8.009833078 260864500 pstA Stress Phosphate limitation Ammonifex degensii KC4 8.962794796 8.768949944 8.983554367 8.525549897 8.260385703 8.015793176 8.329964014 8.02809194 8.336846675 8.232245501 8.081414218 8.317985672 73540492 pilin virulence pilin Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.971584882 8.867043302 8.790928032 8.318281731 8.166711779 8.369247998 8.915603276 8.177545184 8.944664254 8.39616302 8.045988098 8.463324066 224519790 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Bacteroides cellulosilyticus DSM 14838 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 8.127850001 7.837964116 8.243628286 7.199018118 7.166286738 7.004682822 6.624096402 7.546048235 7.051808515 6.754184461 7.238697929 254449746 AceA Carbon cycling Carbon degradation others Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 9.183733933 9.04224847 9.234084522 8.908927952 8.739267424 8.442904014 8.706969272 9.049294969 8.843852849 8.828195417 8.840035146 8.814081519 220720163 pcaG Organic Remediation Aromatics Other aromatics Variovorax paradoxus S110 8.375107565 8.380506951 8.74966584 8.414643179 7.438915917 8.347238219 8.20931556 8.479014024 8.163888834 7.979054014 7.830056432 227380130 endochitinase Carbon cycling Carbon degradation Chitin Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 9.181886211 9.169794862 9.238661819 8.987856236 8.931706425 8.911009575 8.941080507 8.92245419 8.800424276 8.965421223 8.907180405 8.815914977 35212160 amyA Carbon cycling Carbon degradation Starch Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 8.556004832 8.512409731 8.317273514 7.6142214 7.787257059 8.182777 8.384086519 7.48781858 8.299867938 7.598056064 7.700515638 7.507228315 33571857 ppk Phosphorus Phosphorus utilization Bordetella pertussis Tohama I superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella pertussis; 10.623212 10.58412769 10.54535714 10.63862539 10.77668128 10.32369828 10.82471216 10.6083146 10.52826578 10.43150696 10.60414399 10.17104441 255334634 sigma_70 Stress Sigma factors Hyphomicrobium denitrificans ATCC 51888 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 8.342077556 8.229019523 8.216453492 8.007899152 7.969063171 7.746112591 7.784310714 7.886965628 8.125904228 7.795367513 7.789659125 7.858752138 219850477 pstB Stress Phosphate limitation Chloroflexus aggregans DSM 9485 8.866490167 8.469519646 8.574310387 8.719485134 8.549451706 8.418739836 8.728024241 8.74396699 8.655476987 8.610182273 8.228628129 8.529116644 84710200 nagK Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8.484630996 8.408546665 8.487405445 7.632892805 7.834110487 7.845683974 8.339734702 7.625812439 8.386031956 7.703800681 7.765886644 7.917011037 118471001 AceA Carbon cycling Carbon degradation others Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.308503 8.294288645 8.373331891 8.677788556 8.610620446 8.759920317 8.201698822 8.778659634 8.093169821 8.633673276 8.855913586 8.437377294 148550480 TehB Metal Resistance Tellurium Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.043957355 8.097098367 8.399886522 7.993866872 7.308615824 7.378275017 7.258002072 7.477689997 7.829902651 7.609626551 7.516576161 7.544149734 161318460 BMO Organic Remediation Other Hydrocarbons Pseudomonas butanovora superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 9.425611887 9.252207015 9.26095698 8.713402577 8.977148965 8.699516062 9.287214222 8.854233935 8.761964261 8.822949016 9.279749037 9.165085409 154245717 ChrA Metal Resistance Chromium Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.840813153 8.65796691 8.575322787 8.777312539 8.581153369 8.423975168 8.534467933 8.716142037 8.744508965 8.825503006 8.743808656 8.910394415 256363589 pstB Stress Phosphate limitation Catenulispora acidiphila DSM 44928 8.847678915 8.948976372 8.823711946 8.460181934 8.642690154 8.471936661 8.295235051 8.74491115 8.534798762 8.752268785 8.493843868 189438581 ara Carbon cycling Carbon degradation Hemicellulose Bacteroides intestinalis DSM 17393 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides intestinalis; 9.212329018 9.266987341 9.101760333 8.502423891 8.347237489 8.259198172 8.070430056 8.075203777 7.982619767 8.133371366 8.556634917 83576191 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 9.010322089 8.875885277 8.946406805 8.229922873 8.146531332 8.112400281 7.781966284 7.591525903 8.133765412 7.813216244 7.769751917 8.288531547 217502395 phoB Stress Phosphate limitation Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 8.568788607 8.723850593 8.681830519 8.288422445 8.107880346 8.21211864 8.025568019 8.037489703 8.37227872 8.013237733 7.896223061 8.355919733 168199016 CopA Metal Resistance Copper Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 9.204739603 9.021271123 9.178795027 9.045381406 8.810940467 8.59520296 8.681559931 9.070466529 8.601967269 8.766888097 8.850561046 9.082380197 225163408 B_lactamase_C Antibiotic resistance Beta-lactamases Opitutaceae bacterium TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 8.823974194 8.982417781 9.016155839 8.843462043 9.319126906 13539569 AceB Carbon cycling Carbon degradation others Rhodococcus fascians superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.25960209 8.408508984 8.388421163 8.276153093 8.043033595 8.49410914 8.537447075 8.337427919 8.299559178 7.836404222 7.98672937 14039125 gdh Nitrogen Ammonification Thermococcus waiotapuensis superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus; 8.323006001 8.372318174 7.92242647 8.28760985 8.156623393 7.816702981 7.968181816 8.167798849 146310572 Al Metal Resistance Aluminum Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 8.021442215 8.034808664 7.769175954 7.748614485 7.543548273 7.702157665 7.872700126 8.147812362 7.985640981 7.418048555 7.665696293 146283160 ArsC Metal Resistance Arsenic Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 7.998770986 8.097098282 7.796471442 7.680777262 7.350936929 7.273062116 7.755044251 7.845612847 7.909843885 7.696569881 7.877180405 83649246 sigma_24 Stress Sigma factors Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 7.938967601 8.139891114 7.584235666 7.616737078 7.494023036 7.194857497 7.706023764 7.679897058 7.704090856 7.522809159 7.62137833 167772155 ppk Phosphorus Phosphorus utilization Anaerotruncus colihominis DSM 17241 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Anaerotruncus;species:Anaerotruncus colihominis; 8.225458282 7.883768117 7.165256314 7.563395265 7.712849005 7.840801777 7.397053911 7.971413538 7.341273845 7.608653989 7.589313397 206685279 ppx Phosphorus Phosphorus utilization Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.769332718 8.483628149 8.594246422 8.511565452 8.332418338 8.77171685 8.661131862 8.882928643 8.512551961 8.392985589 8.47462959 154159345 phn Organic Remediation Herbicides related compound Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 10.26898982 10.22208228 9.96235876 10.28791002 10.27899896 10.32039112 10.12072884 10.7312815 9.915890507 10.52125553 10.58168626 10.42301598 194332882 dsrA Sulphur sulfite reductase Prosthecochloris aestuarii DSM 271 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Prosthecochloris;species:Prosthecochloris aestuarii; 8.382949059 8.323331518 8.655183289 8.057892836 7.829939659 7.748196506 8.022068508 7.845485043 8.007974094 8.093333682 8.137331098 113473919 nahA Organic Remediation Aromatics Polycyclic aromatics Sphingomonas sp. KA1 8.89218661 9.094453462 9.080717127 8.022581243 8.467544325 8.894232078 7.730116731 8.636181941 7.829913774 8.453540123 8.265931696 58616762 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Ehrlichia ruminantium str. Gardel 8.872955693 8.803868529 8.842930908 8.242279538 8.210032064 8.079479048 7.665406337 7.704384597 8.180218971 7.9315206 7.936636555 8.230976354 150391689 CadA Metal Resistance Cadmium Alkaliphilus metalliredigens QYMF 8.779126609 8.799078694 8.73980289 8.023274781 7.927992096 7.951670972 7.762860608 7.526661814 7.900369334 7.754764742 7.697350681 8.127974176 89346303 narJ Stress Oxygen limitation Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 9.057340994 9.187372461 9.627374274 9.369552421 9.53582797 9.200487784 9.221630997 9.89167313 8.939734148 9.571838346 9.291726601 9.458321113 198265177 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 9.384670824 9.038420278 8.425420778 8.260428779 8.287301131 8.62167816 8.526451425 62122373 AceA Carbon cycling Carbon degradation others Fomitopsis palustris superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Fomitopsis; 8.432906706 8.598819768 8.910234307 8.302206519 8.441173546 8.271748274 8.323316394 8.195167709 8.375592542 8.33344987 8.299640747 8.343514719 163745103 hrcA Stress Heat shock Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 9.714223548 9.531617317 9.741226293 9.643190411 9.421181963 8.90382151 9.287193316 9.532322649 9.604878717 9.522883159 9.666189413 9.616493263 119668780 sigma_24 Stress Sigma factors Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 10.06286458 9.683342813 9.593042806 10.31074588 9.970537323 9.515320976 10.31042915 10.13188971 9.940452938 10.01928725 9.890270053 9.851770061 121554010 pcc Carbon cycling Carbon fixation Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 9.457813959 9.364973232 9.279476409 9.377499393 9.85500616 9.678271035 9.458146286 10.27968881 9.245177475 9.712778984 9.460361924 9.938787415 238027834 katE Stress Oxygen stress Burkholderia glumae BGR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia glumae; 8.133497799 8.054393688 7.685341222 7.624200727 7.716122349 7.570877225 7.754407801 7.868856357 7.530758813 7.368873873 7.400052379 146192104 rubisco Carbon cycling Carbon fixation Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.002859825 7.784914846 8.34372358 8.231815246 8.091567609 7.379972068 8.239198152 8.010979356 7.993299163 8.262662924 7.589220411 193212046 BchY other category chlorophyllide reductase Chlorobaculum parvum NCIB 8327 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum parvum; 8.766715423 8.61442065 8.619314089 7.271436114 8.150767082 8.094360564 8.063184347 7.002149704 8.552383992 7.840086204 7.713702628 7.781947195 182413547 CopA Metal Resistance Copper Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 9.182114999 9.109105727 9.101139447 8.590738371 8.513366216 8.424525036 8.629449843 8.407811077 8.869155873 8.53999696 8.474329718 8.648660343 227967398 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 8.564708632 8.801074702 8.559490937 8.239347558 7.980643747 8.639612253 8.605316924 8.293137647 8.721262581 8.411035737 8.494452339 8.532897673 116750382 atzA Organic Remediation Herbicides related compound Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 9.237543088 9.242662539 9.055977944 8.884050546 8.733481984 8.657866184 8.845097446 8.87416508 8.765471904 8.664970337 8.634829572 8.81337309 119461883 phn Organic Remediation Herbicides related compound Nodularia spumigena CCY9414 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nodularia;species:Nodularia spumigena; 8.13331235 8.01684021 7.621651245 7.679077137 7.303920592 6.987601179 7.547385939 7.878464678 7.402984616 7.375084861 7.347263101 220710022 iro virulence Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.482336277 8.300836374 7.78642393 8.048547542 8.360658743 8.513694956 7.964342214 8.684495706 8.460988621 8.333073897 8.353187354 56809439 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.965978665 7.945665245 8.272815912 7.689991905 7.444951819 7.449547312 7.083057923 7.116007243 7.820216594 7.258334398 7.307166886 7.507006994 145221509 CopA Metal Resistance Copper Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.825216693 8.81636502 8.769244004 8.412749379 8.478296212 8.884997535 8.935570885 7.881035702 9.015703348 8.379079721 8.832895774 8.535454531 256825061 glnA Stress Nitrogen limitation Kytococcus sedentarius DSM 20547 9.609612567 9.718415002 9.554068516 8.765283486 8.889541807 8.909846504 9.006932472 8.926647554 9.034196985 8.847155557 8.909703909 9.109479588 159172516 merP Metal Resistance Mercury Vibrio campbellii AND4 8.104850825 8.201815407 7.669593741 7.491734559 7.40240639 7.358039928 7.685218177 7.752919164 7.467639019 7.623698881 55231681 norB Nitrogen Denitrification Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 8.66183964 8.49726473 8.249790951 8.234431424 8.020202158 7.993350699 7.799515023 7.852181302 8.057402048 8.161358497 8.059622221 170077212 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Synechococcus sp. PCC 7002 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.78907817 8.770557488 8.274375565 8.294645551 8.170321684 7.931674471 8.575107758 8.09315831 8.37618652 8.340273535 8.105441726 18034187 APS_AprA Sulphur adenylylsulfate reductase Desulfotignum balticum superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfotignum; 9.016264274 9.357418141 7.902712318 8.564450566 8.813860759 9.139427426 7.974577623 8.486634679 8.379557083 8.763267996 163735960 sox Sulphur Sulphur oxidation Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 8.749452457 8.738524369 8.628876864 8.537476898 8.485575279 8.274040152 8.408129559 8.719653731 8.72990264 8.711717283 8.575001021 8.763250463 149816524 sigma_24 Stress Sigma factors Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 9.196375794 9.316990201 9.089059112 9.068643887 9.335532676 9.298216668 9.671477216 9.361161476 9.365620579 9.234550032 9.604795516 9.549618035 114545228 hrcA Stress Heat shock Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.351626535 8.527261891 8.369141314 7.662824307 7.848432576 7.883984414 8.231993484 7.801427058 8.005046133 7.762442611 7.878181809 7.783453425 283945980 cap virulence capsule Conexibacter woesei DSM 14684 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Conexibacteraceae;genus:Conexibacter;species:Conexibacter woesei; 8.17488033 8.201700035 7.825421289 8.125747689 8.088804421 8.258884245 7.891905143 7.753492139 7.873202908 7.980379858 196158069 CusA Metal Resistance Copper Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 8.691378829 8.588410231 8.977882359 8.614181381 8.53643985 8.161805898 7.868771774 7.737832824 8.12042754 8.195664751 8.288654444 83316854 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.74676369 8.297323774 8.448639902 8.180250677 8.101112331 8.071238714 8.30086884 8.40344161 6599025 major_capsid_protein Bacteria phage STRUCTURAL Bacteriophage phiYeO3-12 order:Caudovirales;family:Podoviridae;genus:T7-like viruses; 8.151800921 8.143188661 8.230001311 7.982041776 7.748618796 7.815900272 7.791939895 8.332905651 8.482002707 7.85034068 8.136630431 256376309 B_lactamase_A Antibiotic resistance Beta-lactamases Actinosynnema mirum DSM 43827 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinosynnemataceae;genus:Actinosynnema;species:Actinosynnema mirum; 8.642468362 8.78507154 8.866853707 8.492248625 8.740696875 8.984599456 8.679340109 9.051411033 8.65137716 8.741043234 8.925625695 8.920085103 21221747 linC Organic Remediation Pesticides related compound Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 9.33663437 9.331981133 8.979374843 9.872953186 9.650736104 9.432479848 9.940849737 9.66765718 9.812256127 9.791570789 9.764838005 9.666823197 115423501 fnr Stress Oxygen stress Bordetella avium 197N 8.789553328 8.999488971 8.740938288 8.417962286 8.515044407 8.112042116 8.267033152 8.34296859 8.20265951 8.609858108 9944313 primase Bacteria phage REPLICATION Roseobacter phage SIO1 8.162338208 7.837870831 8.190728782 7.368787737 7.606391412 7.536829161 7.145893722 6.964691399 7.443113422 7.06567605 7.387208665 183602404 glnA Stress Nitrogen limitation Bifidobacterium animalis subsp. lactis HN019 8.814852271 8.275890339 8.572961589 8.730881525 8.56696311 8.062140748 8.443569655 8.339046402 8.357688404 8.358744171 8.100988173 74056840 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 9.465676721 9.23125767 9.473763565 9.478145935 9.309506942 9.065522681 9.680116823 9.459953736 9.590956096 9.464189582 9.469419177 9.266873078 118760123 tfdA Organic Remediation Aromatics Chlorinated aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 9.394829614 9.177360004 9.34387147 9.189466367 8.962607162 8.890945304 8.979468132 9.254477206 8.959394628 9.056165395 8.840260704 9.209132811 117989266 pbrA Metal Resistance Lead Burkholderia phytofirmans PsJN 8.448089431 8.139789698 8.119055321 8.320041736 8.056517037 7.855832331 8.096089217 8.24630023 8.251336678 8.241539761 8.021723064 7.860924023 118424388 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.310330154 8.469058922 8.305792828 7.544952788 7.683988079 7.814839888 8.164926825 7.579527178 8.254752115 7.77229791 7.559186497 7.728806445 189026229 gyrB other category gyrB Treponema pallidum subsp. pallidum SS14 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema pallidum; 9.212285693 9.109845613 9.281764038 8.663214061 8.146326035 8.17589213 8.193910934 8.256303677 8.543730928 8.439242706 8.472520978 8.795847446 43823426 nhh Organic Remediation Aromatics Nitoaromatics Agrobacterium tumefaciens superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 8.794286415 8.559460215 8.717008881 8.451924719 8.359832396 8.281399672 8.624906424 8.518325038 8.652222927 8.399176044 8.420784836 8.140794774 116251514 linC Organic Remediation Pesticides related compound Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.117458634 7.357858764 7.128614557 7.7198263 27349343 pstC Stress Phosphate limitation Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 9.519928327 9.31024455 9.232564847 9.699268499 9.529988358 9.058954523 9.888220284 9.744807427 9.306502959 9.62129126 9.571097004 9.250672005 241362840 sigma_24 Stress Sigma factors Acidovorax delafieldii 2AN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax delafieldii; 8.642259356 8.606573389 8.319316637 8.169939335 8.234263162 8.197622718 8.56919693 8.287078902 8.323748353 7.971027215 8.204656881 8.201220071 110636076 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 8.348612539 8.165203941 8.066680618 7.545594578 7.5272112 7.702112302 7.710748972 7.663226004 7.753530994 7.665557887 7.635061822 7.617290209 126708680 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 9.199261987 9.014065999 8.84645661 8.758660861 8.176691556 8.602806126 8.761917473 8.443488261 8.537991744 8.556009115 8.667777912 8.517486518 12722969 SMR_antibiotics Antibiotic resistance transporter Lactococcus lactis subsp. lactis Il1403 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Lactococcus;species:Lactococcus lactis; 8.928302192 9.000394566 9.18388606 8.883331996 8.462215288 8.381366948 8.680959059 8.514332737 8.545425428 8.501401012 8.683412051 113526287 Arylest Organic Remediation Aromatics Other aromatics Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.236067079 8.223397488 8.404255295 8.242494875 7.931018113 7.891321357 7.78405883 7.9413097 7.780987858 7.780812862 8.071473952 209886261 sigma_32 Stress Sigma factors Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 8.744294209 8.682170435 8.633337764 8.612774568 8.601894768 8.579961205 8.679484465 9.078240155 8.965823935 8.97640043 8.737596123 8.837739514 88864008 rd Organic Remediation Chlorinated solvents Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 8.331790405 8.353538141 8.13621137 7.823403861 7.863052017 7.730333003 8.230582757 7.927867984 8.037702141 7.978531698 8.174729881 119376611 CadA Metal Resistance Cadmium Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.694928008 8.642883851 8.656831168 8.366456371 7.944656215 8.000263792 7.945852233 8.008129636 7.879669454 8.170236684 7.658471483 7.989163696 126732180 AceB Carbon cycling Carbon degradation others Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 8.463432519 8.282550714 8.5923016 8.375621806 8.408472726 8.232650317 8.404335539 8.469061213 8.358871187 8.485822383 8.510296824 8.321543672 157149059 CadA Metal Resistance Cadmium Citrobacter koseri ATCC BAA-895 8.437816619 8.408467579 8.700285584 8.647554502 8.491086882 8.441869089 8.197174658 8.326928324 8.237938119 8.458779353 8.162453731 8.08526236 218258140 cydA Stress Oxygen limitation Parabacteroides johnsonii DSM 18315 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides johnsonii; 7.665196051 7.582816485 7.814932718 7.844393765 8.002704093 8.06736435 7.856781355 7.984237857 239519185 ara Carbon cycling Carbon degradation Hemicellulose Clostridiales bacterium 1_7_47_FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales; 8.97041129 8.839402187 9.298565839 8.354710713 8.072529123 8.356574188 8.244846483 7.99383024 8.244902433 8.234000683 8.464538046 169627729 akbF Organic Remediation Aromatics BTEX and related aromatics Mycobacterium abscessus 8.528976933 8.934685833 8.790187453 8.548708538 8.53713733 8.282419441 8.773643178 8.78132157 8.776600587 8.660125037 8.330302604 8.46714664 190996078 cytochrome Energy process Energy process Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 9.451115309 9.694783719 9.117692786 8.212674307 9.078490333 9.152702546 9.331889754 7.747798205 9.441986857 8.691435508 8.759979128 218665458 ppx Phosphorus Phosphorus utilization Acidithiobacillus ferrooxidans ATCC 23270 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 8.15741725 8.427190388 7.774116878 7.743018105 7.375494868 7.857104485 7.513266157 7.720309118 7.882166476 7.814504065 113936383 ara Carbon cycling Carbon degradation Hemicellulose Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.492244882 8.635188603 8.877997329 8.501502026 8.350659075 8.250705086 8.116589936 8.557756328 8.223711847 8.493414583 8.566858676 8.169253918 116250319 phoB Stress Phosphate limitation Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.698332856 8.689937401 8.83269388 8.157381015 8.765784805 8.809191763 9.08145685 7.67955884 8.964789823 8.029357537 8.32865548 209909672 atzC Organic Remediation Herbicides related compound Enterobacter cancerogenus ATCC 35316 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 8.395850477 8.067757838 8.665961655 8.062319035 8.089908981 8.039788012 7.719881954 8.281638978 7.963821307 8.12881133 8.072873627 8.167686864 68343114 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 9.351652868 9.283523046 9.27269432 8.810750661 8.588200147 8.50148229 8.864230883 8.511365339 8.956233375 8.497274878 8.432432665 8.558493355 190994006 mer Metal Resistance Mercury Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 10.5100152 10.38724429 10.4167096 10.01885088 10.18236323 9.963433026 9.733589741 9.715775364 9.893230871 10.04459037 9.902177508 10.08433959 283824054 sigma_32 Stress Sigma factors Rhodomicrobium vannielii ATCC 17100 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 7.912247773 7.608015034 7.826693719 7.630076535 7.657226948 8.220193254 7.781462912 7.809913801 7.967380491 229019220 nplT Carbon cycling Carbon degradation Starch Bacillus cereus AH1273 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 8.188748572 8.077679419 8.235912566 8.636073875 8.677413011 8.418096681 8.542314978 8.387090766 8.919413432 8.845982506 8.557920568 3618270 bphA Organic Remediation Aromatics Polycyclic aromatics Sphingomonas sp. 8.805149231 8.686694717 8.783168514 8.207848706 8.587504239 8.780570672 8.884324048 8.386587099 8.919869024 8.439113882 8.665616345 8.49263927 189425456 bclA Organic Remediation Aromatics Aromatic carboxylic acid Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 8.148518669 8.724614126 8.435415538 7.690260995 8.688241407 8.985365074 8.898451488 8.75416721 8.650506306 8.702700247 8.682757459 194291249 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 10.4613897 10.17023096 10.29737091 9.973161267 9.870865064 9.557696341 9.703720558 9.415914834 9.991430123 9.893805244 10.0275169 9.661303687 209886504 AceB Carbon cycling Carbon degradation others Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 8.653276472 8.703600621 8.602988399 8.595021142 8.727274583 8.747112351 8.926301776 9.089356929 8.518432413 9.206421948 8.906431308 8.854616901 29424788 DNA_polymerase_type_I Bacteria phage REPLICATION Mycobacteriophage Bxz2 order:Caudovirales;family:Siphoviridae; 9.48643566 8.749258831 8.882598845 8.714857612 9.117747252 8.576186339 8.794766558 8.61726863 8.425095835 8.887149402 9.101597693 8.857555626 126213339 tfdA Organic Remediation Aromatics Chlorinated aromatics Pichia stipitis CBS 6054 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Scheffersomyces;species:Scheffersomyces stipitis; 8.315872129 8.17152153 7.378190796 7.827645894 145576501 linB Organic Remediation Pesticides related compound Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 7.81636697 7.779584985 7.832312055 7.61403791 7.894810863 7.955577862 7.884995642 7.922144411 7.681867675 268310392 sigma_24 Stress Sigma factors Thermomonospora curvata DSM 43183 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora;species:Thermomonospora curvata; 9.064058004 8.812032381 8.900706164 8.424192091 8.580345033 8.818651549 9.166906049 8.704214927 9.014782122 8.744549829 8.687803544 8.597062974 78223282 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 8.009230883 8.011678482 7.308583628 7.480091431 7.914194192 7.676344413 7.85321622 8.051155234 7.654817774 7.886440615 8.207829751 158523522 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 8.90426878 8.752414665 8.374693143 8.851282617 8.837031974 8.525952167 8.349797403 8.705624571 9.27022322 8.406269879 8.355348838 8.569686691 119448637 pcc Carbon cycling Carbon fixation marine gamma proteobacterium HTCC2143 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 9.191512023 9.322912152 9.48079093 9.108164838 9.3464864 9.295401848 9.426826931 9.736998454 9.054955286 9.661258166 9.495380398 9.612780517 91681825 pstC Stress Phosphate limitation Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.983580079 8.329162526 7.481430845 7.712231648 7.809506338 7.889087608 7.635246718 8.066582191 7.690338222 7.853493821 7.844370323 266619189 fnr Stress Oxygen stress Clostridium hathewayi DSM 13479 7.926952795 8.004690377 7.795437869 7.957043224 8.366320555 7.963835021 8.018250155 7.90378428 7.848768703 256760111 rubisco Carbon cycling Carbon fixation Thiomonas intermedia K12 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas;species:Thiomonas intermedia; 8.270604502 8.457006647 8.013344529 7.637959169 8.119203906 8.071491106 7.843062484 8.101677992 7.834895095 7.859031522 8.212919288 187920620 phn Organic Remediation Herbicides related compound Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 9.051083273 8.637006362 8.72015189 8.649192325 8.44145477 8.383040543 8.480310938 8.440469955 8.518569036 8.245756198 8.147577169 8.498242402 78102057 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.564648371 8.582079193 8.280371087 7.703487249 7.745751183 7.848023065 8.239064573 7.674414669 8.572356424 7.726711905 7.748591215 7.773643764 145701525 CopA Metal Resistance Copper Metallosphaera sedula DSM 5348 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Metallosphaera;species:Metallosphaera sedula; 8.338100043 8.125297657 8.618829832 7.673406947 7.763024027 7.703578252 7.559597594 8.46046157 7.482505535 7.522375977 7.835183925 282599164 T4_recomb_endonuclease Bacteria phage REPLICATION Deftia phage phiW-14 order:Caudovirales;family:Myoviridae; 8.427860355 8.04052756 8.257264672 8.125300627 7.879082937 7.781083079 7.96647877 8.257834901 7.745980355 270737754 hly virulence hemolysin Desulfovibrio aespoeensis Aspo-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio aespoeensis; 8.669950675 8.857439948 8.734054956 8.529356117 8.574883278 8.379319602 8.686415757 8.770994803 8.660654941 8.46331036 8.430471231 8.294808125 17428871 MFS_antibiotic Antibiotic resistance transporter Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 8.938638195 8.835669758 8.441911744 8.490575503 8.61525134 8.740243524 8.394178543 8.737223832 8.926313057 8.682556064 8.925257322 8.54609703 192803541 ChrA Metal Resistance Chromium Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.926720265 8.780221794 8.414628436 8.167022431 8.13193613 8.090115595 8.343461269 7.931781511 8.50740838 7.964559188 8.175738664 8.158933235 161382920 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 7.899091992 8.128274629 7.258923675 7.010948041 7.286289889 7.258046583 7.294057031 7.585340158 7.247560657 7.339656318 109452531 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.788240932 8.139719195 8.239409786 7.841224409 8.084519256 8.140812382 8.528716099 7.995243564 21223206 alkJ Organic Remediation Other Hydrocarbons Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.647699954 8.507148011 8.845236325 8.976907501 8.822432362 8.621844827 9.17098285 8.637333774 9.059817326 9.019751882 8.872796138 149810599 proV Stress Osmotic stress Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.048093093 8.09014262 8.209048965 7.957823558 8.128307892 8.238360935 8.240092113 8.864194425 8.398618232 8.800731301 8.604992787 8.643414406 221085505 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 8.12578512 8.174527384 8.209503555 8.101129981 7.898589715 8.061374192 7.937513884 7.988178457 8.145129667 7.974920004 7.940114076 7.896297873 15116 Host_recognition_T2_type Bacteria phage HOST RECOGNITION/STRUCTURAL Bacteriophage M1 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 9.22574662 9.028045742 9.217393263 8.353715248 8.393453596 8.342166192 8.473778424 8.050993365 8.645832371 8.386083404 8.143566171 8.574068053 157371265 bphF1 Organic Remediation Aromatics Polycyclic aromatics Serratia proteamaculans 568 8.520332943 8.508341621 8.744447246 8.162492521 8.139242661 8.346088916 8.430119514 7.999402881 8.630348998 8.008517155 8.097855532 8.268546346 72162854 nagG Organic Remediation Aromatics Aromatic carboxylic acid Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 8.516160622 8.576822396 8.582025253 8.42988026 8.524649701 8.325673128 8.328065145 8.570269514 8.318313626 8.138903903 149191879 gyrB other category gyrB Vibrio shilonii AK1 9.261068101 9.327162387 9.27336452 8.618685276 8.712041958 8.431635739 8.663452733 8.871575868 8.733792221 8.877009785 8.858333955 8.686909093 68055671 ChrA Metal Resistance Chromium Exiguobacterium sibiricum 255-15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 8.563224296 8.041800069 8.365979615 8.39988938 8.252931924 7.962983066 8.410425197 8.298834758 8.161841049 8.019368057 7.966241778 8.080049957 67545823 ChrA Metal Resistance Chromium Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 9.201470969 9.289748909 9.1503455 8.910433108 8.906310725 8.738262308 9.347914856 9.322777897 9.042572318 9.244952909 9.34530057 9.117193504 110283054 ZntA Metal Resistance Zinc Mesorhizobium sp. BNC1 9.280632357 9.208141542 9.368795017 8.830117686 8.836436681 8.465947434 8.583026128 8.160693425 8.635880933 8.536113698 8.542552396 8.864718812 90954549 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.305774729 7.762201457 33599718 nahA Organic Remediation Aromatics Polycyclic aromatics Bordetella bronchiseptica RB50 8.851902426 8.78211577 8.619887468 8.631300331 8.59842507 8.202508034 8.869952548 8.777926372 8.848141445 8.586726469 8.541717845 8.587908585 76817842 type_III_secretion virulence secretion Burkholderia pseudomallei 1710b superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 9.761249488 9.620920591 9.676033147 9.190890299 8.956249787 9.258819223 9.055858461 8.772973377 9.379786247 9.390725518 9.611063648 9.441794259 154155569 chnB Organic Remediation Other Hydrocarbons Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 9.932031442 9.755410105 9.933509113 9.282778418 9.350383658 9.262182226 9.015997839 9.10569582 9.605564299 9.337403715 9.365437345 9.564248469 119116052 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.316631491 8.307408248 8.310753924 7.967939661 8.170643388 8.540066478 8.607249985 8.087831664 8.487258831 7.962225048 8.010059202 8.140005203 229855168 endochitinase Carbon cycling Carbon degradation Chitin Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 8.494298927 8.325584534 8.4932187 8.064416913 7.702761557 8.03878564 8.409136185 8.104423744 7.696209713 7.992858933 7.699881576 269839307 cda Carbon cycling Carbon degradation Starch Thermobaculum terrenum ATCC BAA-798 8.678036758 8.59509531 8.374864363 8.647647676 8.67095336 8.557950856 8.551870664 8.48324969 8.700139645 8.589690643 8.525086442 8.254561973 115291791 gyrB other category gyrB Gordonia sp. D2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 9.256694392 9.463077345 9.014948011 9.095081789 9.350756697 9.336720295 9.729816227 9.707900271 9.414427917 9.932255464 9.887163043 9.752486749 49072886 phtA Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii 10.57415003 10.45709361 10.64727317 10.19301369 10.25092567 10.05801311 10.20012075 9.855546533 10.28687768 9.979120615 10.25032909 10.20879696 189085863 ssb Bacteria phage REPLICATION Salmonella phage phiSG-JL2 order:Caudovirales;family:Podoviridae;genus:T7-like viruses; 8.276166184 8.292683005 8.235843886 8.486992258 8.536107827 8.286315794 8.123513679 8.753367339 8.586143919 8.722465763 8.384827501 94496764 type_III_secretion virulence secretion Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 9.993620933 9.787542613 9.984880432 9.919665683 9.765512428 9.412360456 9.798310342 10.19442524 10.08287174 9.863949835 9.644054539 9.824842482 54026451 SMR_antibiotics Antibiotic resistance transporter Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 9.505920891 9.409721609 9.42027061 8.942926645 8.831921141 8.682820961 8.773025259 8.775897792 8.868954296 8.926384056 8.933945158 8.840102239 219563142 nahA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 8.772811877 9.159950401 8.979811226 8.165442539 8.211690896 8.199776607 7.610171182 7.680067708 7.842375965 7.633126575 7.715924149 8.156310867 260629435 hly virulence hemolysin Jonquetella anthropi E3_33 E1 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Jonquetella;species:Jonquetella anthropi; 8.707571684 8.614181513 8.789955109 8.158117439 7.787928765 7.662107063 7.949883198 7.71186068 7.908907422 7.942805208 7.955126425 33595354 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Bordetella parapertussis 12822 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella parapertussis; 7.988809267 7.601788661 7.385020184 7.844174293 7.611178635 7.740036939 7.696691635 7.821951956 7.702839075 162455503 sigma_24 Stress Sigma factors Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 8.778634298 8.908062885 9.050519372 8.546492561 8.403300388 8.291981348 8.113114053 8.067507278 8.522428061 7.897614291 8.06812788 8.374564556 72123437 silC Metal Resistance Silver Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.318578694 8.51060903 8.642513305 7.668084706 7.623021532 7.740164043 7.128860725 7.749415205 7.500798739 7.676464866 7.765474564 145701850 4Fe_4S_ferredoxin Bioleaching Electron transport Metallosphaera sedula DSM 5348 8.3801459 8.364420997 8.467031554 7.084433502 7.737290614 7.896642666 7.708732802 7.715916776 7.81520328 119538980 atzA Organic Remediation Herbicides related compound Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 9.137153176 9.018274968 9.233786416 8.596563927 8.580181149 8.439410818 8.593470392 8.472129623 8.563763315 8.407172016 8.76393036 8.661565425 46307850 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.215152328 8.233614728 8.450264186 8.601793364 8.617501682 8.407565192 8.188877419 8.85261878 8.40932405 8.633015587 8.410062903 8.524880368 254820051 CDH Carbon cycling Carbon degradation Cellulose Mycobacterium intracellulare ATCC 13950 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 8.807030027 8.513929311 8.969515662 8.210475658 7.9985576 8.176773005 7.704981489 7.036731782 8.222396064 7.976181495 8.089733498 8.083580913 85722427 pstB Stress Phosphate limitation Syntrophus aciditrophicus SB 6.704313816 7.126989925 6.810163168 7.014978085 7.225250113 163858180 B_lactamase_C Antibiotic resistance Beta-lactamases Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 8.905859832 8.721842844 8.999285238 8.428928402 8.112832437 8.657524965 7.826807858 8.171874845 8.393402528 8.485072626 8.452600958 15889672 ureC Nitrogen Ammonification Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.490413745 8.747537684 7.82595287 7.783221384 8.331359599 8.736575756 7.95738744 8.567064704 7.565417921 7.930669671 7.977956987 120559756 AceB Carbon cycling Carbon degradation others Shewanella sp. W3-18-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 8.336218936 8.488729814 7.336862051 7.829740139 8.123609023 8.228904267 7.903647629 7.841218341 7.856833634 7.495250584 7.568812091 194343326 sigma_70 Stress Sigma factors Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 9.066636496 8.628011409 8.75524641 8.501260882 8.377805076 8.478949625 8.444028358 8.581067031 8.642476909 8.491758746 8.716129728 8.634844809 76577376 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.478658675 8.569192955 8.761475243 8.213246161 8.187951957 8.106443405 7.980129293 8.374531616 8.421743296 8.347777648 8.387482224 50876763 hly virulence hemolysin Desulfotalea psychrophila LSv54 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfotalea;species:Desulfotalea psychrophila; 8.97292728 8.850506918 9.092707839 8.632472205 8.729867925 8.474497915 8.731591535 8.701887455 8.643339666 8.701519817 8.575863874 8.408677979 70728377 iro virulence Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.888685734 7.580154107 7.417547249 7.226791292 7.389762406 7.779078346 56809411 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.466863427 8.151662588 8.584303441 8.015232479 7.9739092 7.969530008 7.686864178 7.889866499 8.026825707 8.004245001 8.012919868 7.728240233 51090287 nagI Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus opacus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 9.661570956 9.451122797 9.848121748 9.130100789 9.020300773 9.140613601 8.967153201 8.558100252 9.116342348 8.886382079 9.02286766 9.204416935 188028904 katE Stress Oxygen stress Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 8.445887299 8.079104484 8.455138781 7.83589431 7.926198195 8.023883372 7.43782148 7.474898098 7.945320245 7.61875592 7.446281053 7.864120682 151585353 glucoamylase Carbon cycling Carbon degradation Starch Halorubrum lacusprofundi ATCC 49239 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 9.337809712 9.16597219 9.13823697 9.107331005 8.895966108 8.595372122 8.948685616 8.919947815 8.951787518 8.997988953 9.091456497 8.839304822 197707433 iro virulence Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 9.260099478 9.296488098 9.373275087 8.811361277 8.674779703 8.623642649 8.583616983 8.795641768 8.645988343 8.716062683 8.657122345 9.008383141 54312035 AceB Carbon cycling Carbon degradation others Mycobacterium sp. P101 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.646899258 8.375054236 8.459360626 8.46799151 8.294922278 8.288146649 8.408752774 8.442278555 8.510136138 8.466334456 8.469990699 8.151618613 121555349 ChrA Metal Resistance Chromium Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 10.13070024 10.24872119 10.3492514 9.625442372 9.424209531 9.598558438 9.903311398 9.533755316 9.966886305 9.817828326 9.790168963 10.01970403 156742580 xylA Carbon cycling Carbon degradation Hemicellulose Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 8.966514582 9.189071775 8.93056785 9.384779886 9.365828671 9.078231771 9.347563789 9.899074067 9.091405202 9.465209518 9.168526378 9.404617197 190575633 nagK Organic Remediation Aromatics Aromatic carboxylic acid Stenotrophomonas maltophilia K279a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 8.675431805 8.499997355 8.788490788 9.027108769 8.986053033 8.785187455 8.894092082 9.299816851 9.05374086 8.868743257 8.767625279 9.105449292 126707644 nagI Organic Remediation Aromatics Aromatic carboxylic acid Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 9.403224196 9.708169344 9.749817387 9.001484957 9.198124639 9.198728372 9.821740817 9.520610563 9.553158243 9.156564092 9.130091939 9.089615948 7188936 pmoA Carbon cycling Methane Methane oxidation Methylocystis sp. M superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylocystis; 9.363855469 9.274014304 9.326983375 8.698223488 8.51406535 8.493022694 8.655871804 8.458081836 8.798235419 8.250216391 8.4241755 8.757433164 71158692 alkB Organic Remediation Other Hydrocarbons Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.648115618 8.693891814 8.189893758 8.225316857 8.354075727 8.558550346 8.316690498 8.502486927 8.440666758 8.488973311 8.531350192 8.321290837 189354062 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 8.846037922 9.083069408 8.785467361 8.140338905 8.049682454 8.062125542 8.451329614 8.156815459 8.787001163 8.115935102 7.835476249 8.148792439 91782280 CDO Organic Remediation Aromatics Other aromatics Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 9.000738618 8.933291845 8.823845517 8.060208476 8.609749249 8.644383314 9.248018618 8.174012673 9.14738824 8.725881602 8.676516288 8.429503088 118466032 narH Stress Oxygen limitation Mycobacterium avium 104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 8.480134629 8.489855327 8.264364397 8.127359811 8.267466589 8.140695276 8.595042249 8.688604709 8.905440127 8.556609482 8.732716199 8.818156958 59892268 nifH Nitrogen Nitrogen fixation uncultured forest soil bacterium superkingdom:Bacteria; 8.576132581 8.736377685 8.032467356 8.15103267 8.057657352 8.349927655 7.987111147 8.424579072 7.927257052 8.06168466 7.904125608 226721634 sigma_70 Stress Sigma factors Azotobacter vinelandii DJ superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 8.535928645 8.425425898 8.47468715 8.265262797 8.233598596 8.066705809 8.213553213 8.237754607 8.293224813 8.069722991 8.120232571 8.162049506 171705277 phytase Phosphorus Phosphorus utilization Yersinia frederiksenii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia; 8.408288274 8.479033962 8.26904854 8.303423071 8.635885215 8.605127706 8.126393182 8.73971473 8.368501305 8.62822905 8.623739088 8.299158595 253700946 cytochrome Energy process Energy process Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 9.176352436 9.039791471 8.954611448 9.498220861 9.439063396 9.398913269 9.306869841 9.66682457 9.101771713 9.59236856 9.725195393 9.066389159 56798381 catechol_B Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 8.877822976 8.693931447 8.707636029 8.815720695 8.860605196 8.703833076 9.021042393 8.966513823 8.666255988 8.692623885 8.87463051 8.287193607 163698292 xlnD Organic Remediation Aromatics Other aromatics Methylobacterium nodulans ORS 2060 8.63104907 8.654839503 8.92132599 8.498200259 8.256631953 8.471451086 8.63932678 8.361413976 8.467389689 8.38645553 8.492522296 8.405773579 38234547 clpC Stress Protein stress Corynebacterium diphtheriae NCTC 13129 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium diphtheriae; 9.787948909 9.813165584 9.704844747 8.998616791 9.11574869 8.918100255 9.011744221 9.258071224 9.104146649 9.359455865 9.303849211 9.313427667 145297045 Catechol Organic Remediation Aromatics Other aromatics Corynebacterium glutamicum R 8.787482676 8.860195937 8.483573627 8.500627226 8.331351351 8.356949417 8.382513066 8.619893097 8.54978715 8.733229117 8.685241043 8.75439238 13475302 type_III_secretion virulence secretion Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 7.621959243 7.593548888 7.609525844 7.648999726 8.064045503 7.823010597 7.543661183 7.746897152 194289664 glx Carbon cycling Carbon degradation Lignin Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 8.531050397 8.398540572 8.08735287 8.123457139 8.224483463 8.440268901 8.59678149 8.388314374 8.23424442 8.18272136 8.144855785 256558705 amyA Carbon cycling Carbon degradation Starch Brachybacterium faecium DSM 4810 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermabacteraceae;genus:Brachybacterium;species:Brachybacterium faecium; 8.544931021 8.645980501 8.693967874 8.662626768 8.702960868 8.914443338 9.065406726 8.666469352 9.283663116 9.155015948 8.980488575 220907335 CadA Metal Resistance Cadmium Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.06611716 7.957358979 8.359558427 8.040591619 7.600496948 7.669787322 7.900635564 8.100957668 90336290 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 8.30033735 8.184972302 7.671305189 7.855263567 7.554498245 7.414238533 7.923725653 7.949450954 8.036118643 7.762709812 227965842 ureC Nitrogen Ammonification Tsukamurella paurometabola DSM 20162 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 8.417734169 8.173556054 8.613747725 8.469947073 8.512221986 7.862770977 8.683672784 8.377252498 8.393181363 8.644345439 8.260416731 251733351 sigma_70 Stress Sigma factors Mesorhizobium loti superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium; 8.499343239 8.089396718 8.324691397 8.633241023 8.382438863 8.387433141 8.250198917 8.820975672 8.403400252 8.754812293 8.726166952 8.590456055 45386149 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 9.594953854 9.516551869 9.266256028 8.692345391 8.652765283 8.540898674 9.129385191 8.710451002 8.976409467 8.8397392 8.902292885 8.934544496 194307044 DNA_polymerase_type_I Bacteria phage REPLICATION Morganella phage MmP1 order:Caudovirales;family:Podoviridae;genus:T7-like viruses; 8.415114396 8.476440431 8.717542392 8.477318506 8.036765172 8.209213898 8.071928186 7.915769247 8.272910008 8.073712949 8.152476268 8.152373495 60476318 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.926481654 7.701187885 7.409689141 7.548546662 8.373682626 7.540589367 7.670904191 7.916625287 256636548 katE Stress Oxygen stress Acetobacter pasteurianus IFO 3283-03 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pasteurianus; 8.174958183 8.108500142 8.289020644 197766675 glx Carbon cycling Carbon degradation Lignin Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 9.064295591 9.228059976 9.183962285 8.265779998 8.569003323 8.877211449 9.011458903 8.71625048 9.181231342 8.763863247 8.843758396 8.703168981 95133480 nrfA Nitrogen Dissimilatory N reduction Desulfuromonas acetoxidans DSM 684 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Desulfuromonadaceae;genus:Desulfuromonas;species:Desulfuromonas acetoxidans; 10.1568137 9.878315927 9.878211556 9.501256326 9.625095339 9.45762612 9.519920958 9.515420699 9.556029124 9.741442566 9.832444391 9.968391041 146303090 4Fe_4S_ferredoxin Bioleaching Electron transport Metallosphaera sedula DSM 5348 9.599359361 9.389615966 9.636263841 8.672833303 8.794213565 8.836651014 8.557567922 8.608954795 8.769779826 8.604797096 8.966655106 83317124 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.311029028 8.280618016 7.798308801 7.789786195 8.036802722 7.883852857 7.947923544 8.018757775 7.993444024 7.651361289 7.768008721 76803698 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 7.924590937 8.304077553 8.16747791 7.406790347 7.418301183 8.093443526 8.064812609 7.542094758 8.232121396 7.587672984 7.874642489 8.177698716 51511958 T5_genome_internalization_A1 Bacteria phage REPLICATION Enterobacteria phage T5 order:Caudovirales;family:Siphoviridae;genus:T5-like viruses; 8.409405721 8.445340957 8.902391233 8.207501075 8.758494439 8.291892916 8.966865241 8.915291186 9.089718796 8.301024402 8.185276958 8.617336214 148608031 endoglucanase Carbon cycling Carbon degradation Cellulose Trichoderma viride superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Trichoderma; 8.528930363 8.161094656 7.974420983 8.207185665 8.299262245 8.412426767 7.978842611 8.049738313 256671930 pcc Carbon cycling Carbon fixation Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 9.56987865 9.669968347 9.596617499 9.079126723 8.947968118 8.999163722 8.960005649 9.141836544 8.977663219 9.181760189 9.075034473 9.217426085 50085095 TerZ Metal Resistance Tellurium Acinetobacter sp. ADP1 8.71185711 8.401615789 8.894661492 8.373678445 7.931738646 8.122383912 7.7955256 8.26757888 7.772034372 8.401610661 8.482194292 147829330 SMR_antibiotics Antibiotic resistance transporter Clavibacter michiganensis subsp. michiganensis NCPPB 382 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 8.870446592 8.780735857 8.370661121 8.513766382 8.878628549 8.843223219 8.42261153 8.631864742 8.797513427 8.532203573 8.692832391 8.308317979 282566060 ppk Phosphorus Phosphorus utilization Providencia rustigianii DSM 4541 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 8.625778985 8.485059528 8.495817778 8.061330945 7.925935722 7.829092806 7.660258125 7.786571402 7.802161988 7.772598968 7.863550947 8.139154153 121715065 endochitinase Carbon cycling Carbon degradation Chitin Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 10.31385568 10.42122937 10.53128145 9.888644648 9.584494341 9.909213337 9.887056894 9.744542164 9.763857382 9.943038542 10.07422425 10.22362863 29891971 glx Carbon cycling Carbon degradation Lignin Ustilago maydis superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Ustilaginomycetes;order:Ustilaginales;family:Ustilaginaceae;genus:Ustilago; 8.380625713 8.289727037 8.498813547 7.916702594 8.014170514 8.007118604 8.111432538 8.225925391 8.328084573 8.342741646 8.374236449 8.336221564 192359785 cap virulence capsule Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 9.140520029 8.888301992 8.438303013 9.588913092 9.550740149 9.465246867 8.877340206 9.602786142 8.909351301 9.239098408 9.470365876 9.093312209 119505498 glnA Stress Nitrogen limitation marine gamma proteobacterium HTCC2080 8.256512317 8.479953096 8.381169393 7.783516653 8.077875029 8.163045789 8.228458374 8.022240674 8.121420393 8.110789363 8.512802145 8.454093669 145701917 ureC Nitrogen Ammonification Metallosphaera sedula DSM 5348 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Metallosphaera;species:Metallosphaera sedula; 8.187486768 8.20495412 7.758367611 7.511697152 7.525817551 7.364300727 7.09853716 7.745697009 7.371264512 7.302463044 7.668562305 187603920 TerC Metal Resistance Tellurium Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 8.468787908 8.589284458 8.759068677 8.206490824 8.179987899 8.106460096 7.936721885 7.944604933 8.199476546 7.971294606 7.416598063 8.31734788 83312163 pulA Carbon cycling Carbon degradation Starch Magnetospirillum magneticum AMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 9.430752203 9.419350772 9.302237285 8.878313088 8.958353227 9.427115823 9.454490567 8.682932048 9.29644973 8.753682422 9.161019882 8.897376398 71279090 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Colwellia psychrerythraea 34H superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Colwelliaceae;genus:Colwellia;species:Colwellia psychrerythraea; 8.219266191 8.15834013 8.638670546 7.701952751 7.418679677 7.680724905 7.256008712 6.856173072 7.818888119 7.277587595 7.246625536 7.535506836 54022568 pstC Stress Phosphate limitation Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 9.237654495 9.633257752 9.348685254 8.909055824 9.367304412 9.884108419 10.04140744 9.845171112 9.792584856 9.889090893 9.606825146 9.980987441 76056987 narG Nitrogen Denitrification uncultured bacterium 9.157261297 9.008715727 8.813400995 8.784958393 8.796549559 8.891001943 9.161681944 9.225968305 9.161930895 9.015780592 9.05629542 9.066534743 56543388 katE Stress Oxygen stress Zymomonas mobilis subsp. mobilis ZM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Zymomonas;species:Zymomonas mobilis; 8.923348997 8.86645741 8.944288569 8.151776787 8.080209917 8.269138577 7.759502484 7.783141354 8.122781387 7.860576165 7.960709595 8.280544826 157147251 tutFDG Organic Remediation Aromatics BTEX and related aromatics Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 8.892219147 9.143833137 8.600334983 9.042869016 8.99109547 8.653993119 8.840331512 8.857581595 8.954207965 8.645832292 8.704737087 8.64197858 126355539 nmoA Organic Remediation Aromatics Nitoaromatics Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.581647956 8.287553216 8.514205364 7.544379565 7.78355104 8.136343822 8.497712405 7.680162744 8.630222443 7.742006518 7.90893662 7.907409059 242226711 pstB Stress Phosphate limitation Clostridium cellulovorans 743B 8.064901594 8.057800973 8.412588065 7.325299974 7.162357371 7.12059873 6.948185274 7.299127494 149176164 catB Organic Remediation Aromatics BTEX and related aromatics Planctomyces maris DSM 8797 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces maris; 7.161656798 7.477607033 7.375834075 7.337721366 7.536513056 7.81001035 7.578796209 7.736937797 7.856307278 179351755 CopA Metal Resistance Copper Natranaerobius thermophilus JW/NM-WN-LF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Natranaerobiales;family:Natranaerobiaceae;genus:Natranaerobius;species:Natranaerobius thermophilus; 8.248880055 8.095935585 8.345935364 7.617043661 7.454997636 7.302141544 7.070614441 6.946152662 7.554370285 7.334006261 7.75792165 251844177 endochitinase Carbon cycling Carbon degradation Chitin Paenibacillus sp. oral taxon 786 str. D14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 8.6348115 8.82389853 9.198442118 8.235155003 8.074137975 8.294343944 7.742442582 7.616183039 8.520807555 8.111209656 8.139654261 8.320347777 28542635 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.479165481 7.689244009 7.754887217 7.948397815 7.429478912 8.206089347 7.620895399 7.279436363 7.86286636 219868355 pstC Stress Phosphate limitation Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 8.551406911 8.247053682 8.260970068 7.992053345 7.730971883 8.097204575 7.679129219 7.429387938 8.130821391 7.547582119 7.349598421 8.020717122 99083227 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.109003982 8.131293649 8.28220231 7.583053122 7.677659171 7.668930136 7.63766678 7.56597051 7.693005217 7.647339605 7.630574826 7.702585335 219951770 pstB Stress Phosphate limitation Methylobacterium nodulans ORS 2060 10.29292472 10.6040283 10.3974695 10.35680703 10.51070873 10.38333835 10.62353871 10.78893739 10.58942507 11.01237901 10.96813451 10.70283317 161158855 grpE Stress Heat shock Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 8.959071257 8.751650674 8.707738312 8.40926584 8.386974449 8.202216742 7.976755229 7.932375339 8.245220783 8.018226617 7.898927409 8.257762445 50950653 xylA Carbon cycling Carbon degradation Hemicellulose Leifsonia xyli subsp. xyli str. CTCB07 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Leifsonia;species:Leifsonia xyli; 9.155661435 9.458121777 9.173121556 8.954841817 9.065192296 8.789269303 9.055748848 9.240762133 9.130472094 9.239270888 9.252776257 9.157265096 126668415 TerD Metal Resistance Tellurium Marinobacter sp. ELB17 10.22666183 10.59895597 10.69312107 10.13751008 10.19866082 10.23102828 10.64600755 10.196698 10.78297699 10.06305694 10.24392933 9.992905518 6460028 TerZ Metal Resistance Tellurium Deinococcus radiodurans R1 8.980536826 9.453287255 9.122500444 8.450880452 8.440186502 8.916944663 9.039757188 8.810353947 9.307569279 8.631152627 8.567315947 8.950041764 163757532 AceB Carbon cycling Carbon degradation others Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 7.917079812 8.236571072 8.363972007 7.766486079 7.67865165 8.004349924 7.575686132 8.125437855 7.584764792 8.282165608 8.443893705 8.159455016 29609297 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 9.456999888 9.479678882 9.339081559 8.468935888 8.704653255 9.17905154 9.522818422 9.359682471 9.637975975 9.028279482 8.995070304 9.132327729 68195235 cda Carbon cycling Carbon degradation Starch Enterococcus faecium DO 8.632056127 8.324610217 8.67967305 8.224782548 8.017596636 7.729399331 7.543380363 7.328121436 7.778137453 7.608651681 7.820380828 8.033235082 260362768 type_III_secretion virulence secretion Vibrio parahaemolyticus K5030 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 8.640599782 8.593838216 8.964501905 8.39493815 8.317199687 8.246039197 8.09865759 7.916602167 8.289433584 8.230120365 8.076212159 8.4253225 196112646 CopA Metal Resistance Copper Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 8.953436883 9.026002519 8.53236975 8.574923038 8.216273978 8.301989376 8.054913094 8.164484324 85723058 fnr Stress Oxygen stress Syntrophus aciditrophicus SB 8.17156153 8.13202842 7.12280846 7.256614515 6.877309943 6.67873265 6.930659856 7.321454799 55978097 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.537051619 8.267460743 8.206159591 7.987910351 7.776489236 7.816725256 7.148977783 7.215628149 7.734209176 7.67287986 7.548591546 7.742117632 167346955 mauAB Organic Remediation Herbicides related compound Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.75410467 8.547556166 8.360813199 8.960730512 9.065648056 8.816075721 8.335082342 8.959845668 8.599707612 8.655310121 8.849013241 8.425797408 114539505 gyrB other category gyrB Fulvimarina pelagi HTCC2506 8.552245847 8.527074592 8.680738349 7.919378568 7.993450972 7.943019589 7.725066619 7.922647196 7.987054372 7.709428244 7.650504023 8.136926077 215429671 pstB Stress Phosphate limitation Mycobacterium tuberculosis EAS054 8.8775587 8.831681623 9.063200428 8.937516586 8.956995307 8.821960219 8.804860531 8.823651572 8.496317375 8.837833701 8.687614023 8.880402857 114567302 glnA Stress Nitrogen limitation Syntrophomonas wolfei subsp. wolfei str. Goettingen 8.663212 8.855134283 8.472058366 7.602268582 7.858773839 7.769171411 8.159954028 7.824368319 8.598503942 7.687845579 7.44832442 7.985786072 184193643 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 9.462190466 9.378433349 9.445987458 8.419679701 8.858482096 8.740794413 157165358 gyrB other category gyrB Campylobacter concisus 13826 8.335660517 8.318966708 7.857455183 7.711311708 8.022930828 8.543621494 8.1077366 8.502076519 7.832667447 7.782196779 7.778925646 219564332 AprA Sulphur adenylylsulfate reductase uncultured bacterium superkingdom:Bacteria; 8.640229832 8.668209174 8.791975239 7.991388816 8.141793509 8.039341737 7.217525112 7.199210024 7.876639414 7.768027758 7.688692503 7.704763256 84359810 endochitinase Carbon cycling Carbon degradation Chitin Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 8.775163223 9.041940672 8.806837029 8.459393611 8.465129232 8.312919298 8.577002188 8.778640998 8.963121758 8.565920193 8.66625337 110592636 pheA Organic Remediation Aromatics Other aromatics Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 8.547477416 8.098578233 8.039118029 8.086768162 8.098971493 8.226788764 8.172902217 8.597556826 7.93339779 7.967245051 7.851935289 113970948 cytochrome Energy process Energy process Shewanella sp. MR-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 8.108362482 8.885285882 8.315034342 8.997707953 8.89432112 8.962976928 9.119294509 9.107371372 8.88709085 9.398033345 9.04864922 8.916622137 157369166 iro virulence Serratia proteamaculans 568 8.833287076 8.778199301 8.788434188 8.700854003 8.572207365 8.614270936 8.725929499 8.607024425 9.022543439 8.579706679 8.733972903 8.421050176 50841271 alkK Organic Remediation Others Propionibacterium acnes KPA171202 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 8.962202991 8.457428069 8.740937969 7.963410523 8.122283254 8.039593052 8.129551869 7.671520678 8.085085379 7.773279276 8.16082374 78198348 ZntA Metal Resistance Zinc Synechococcus sp. CC9605 8.643547494 8.71864415 8.892107502 8.245334126 8.026673947 7.948122367 8.174868801 8.049938287 8.076327363 8.130128132 8.08295274 8.214663598 151302200 APS_AprA Sulphur adenylylsulfate reductase Desulfonatronum lacustre 8.828926242 8.79255636 8.60502297 8.388097157 8.548412521 8.807969866 8.771752895 9.016553207 157315726 silP Metal Resistance Silver Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 7.592702928 7.600847725 7.370811987 7.229344173 7.16279768 7.459643236 163862734 proV Stress Osmotic stress Bacillus weihenstephanensis KBAB4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus weihenstephanensis; 7.711081298 7.569149438 7.268260074 7.333152113 7.698251263 7.932531839 7.712794984 7.416196633 7.623630593 1856979 Catechol Organic Remediation Aromatics Other aromatics Rhodococcus erythropolis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.437953388 8.235774622 8.222130971 8.206769075 8.311502676 8.413186669 8.304487632 8.704128716 8.075117259 8.022964081 8.161748822 262043618 glnA Stress Nitrogen limitation Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884 8.833825123 8.660458276 9.034149535 8.684403066 8.666249048 8.340420891 8.58326877 8.772998365 8.666728623 8.980867687 8.845527503 8.808103752 iegAssA7 AssA Carbon cycling Carbon degradation Others 8.639524457 8.793015087 7.771173353 7.867388744 7.749907388 7.908829701 7.478200931 7.780340853 7.567020844 8.0433572 56379279 CopA Metal Resistance Copper Geobacillus kaustophilus HTA426 9.009149696 8.719516517 8.756578397 8.594935231 8.641106548 8.525570382 8.332537319 8.710950973 8.064605419 8.631039922 8.669946277 9.028678085 166860387 phdCI Organic Remediation Aromatics Polycyclic aromatics Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.311572294 8.264376946 8.273163442 8.461279536 8.396369828 7.991026164 8.188812203 8.26132024 8.378849877 8.565396548 7.868978751 114544598 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 9.470792144 9.096742066 9.588766181 8.623383433 8.731388896 8.812434687 8.513597979 8.618306842 9.098748467 8.655825749 8.595647703 8.744189948 118719179 ChrA Metal Resistance Chromium Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 8.227327429 8.14729034 8.43029963 7.984207056 7.69429625 7.680715201 7.600867467 7.44712081 7.469308697 7.816724662 7.588510095 110630458 nifH Nitrogen Nitrogen fixation uncultured soil bacterium superkingdom:Bacteria; 8.320337876 8.244234728 8.430491585 7.66074383 7.599122881 7.748517226 7.661086263 7.424395998 7.891378258 7.510652978 7.511680198 7.795918415 116065671 hrcA Stress Heat shock Synechococcus sp. BL107 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.122216994 8.362064507 8.473627857 8.255391796 8.445855167 8.33191552 8.084849377 8.40145083 8.307630514 8.476257455 8.290353397 8.150225937 87331846 arhA Organic Remediation Aromatics Heterocyclic aromatics uncultured bacterium superkingdom:Bacteria; 9.01080898 8.954912421 8.846699917 8.369995869 8.590552485 8.663986504 8.320303665 8.312956941 8.367871501 8.548857876 8.622629935 148264606 pstB Stress Phosphate limitation Geobacter uraniireducens Rf4 8.963497412 8.473254356 8.425537223 8.184357791 8.391234889 8.48130926 8.532413685 8.616589519 8.585519585 8.538213563 8.806152034 8.471800834 27379682 nirA Nitrogen Assimilatory N reduction Bradyrhizobium japonicum USDA 110 8.801959188 8.824929702 9.119162369 8.944124293 8.611361636 8.593271492 8.450010957 8.738684973 8.304783709 9.126092358 167568252 gyrB other category gyrB Burkholderia oklahomensis C6786 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia oklahomensis; 9.194877454 8.997351803 9.001844207 8.319382118 8.122815106 8.321367638 8.534103943 8.34462665 8.514464048 8.782355674 8.85759326 8.764603117 237884988 ABC_antibiotic_transporter Antibiotic resistance transporter Micromonospora sp. ATCC 39149 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 8.393422866 8.473811938 7.947589137 8.198492572 8.345067012 8.086087063 7.888382863 8.309603637 8.005568358 8.252870416 8.139655224 192801916 CopA Metal Resistance Copper Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 9.519458963 9.462654825 9.653393654 9.28669519 9.102596593 9.022506474 9.385536839 9.215204647 9.520628258 9.246800715 9.502805207 9.141581487 148569373 sigma_70 Stress Sigma factors Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 8.562930176 8.451969089 8.504744834 7.8750386 8.167768419 8.302732111 8.606956137 8.25879735 8.3251677 7.957773915 8.21690665 8.062951287 91693851 bphD Organic Remediation Aromatics Polycyclic aromatics Burkholderia xenovorans LB400 8.108421898 8.412110507 8.342502859 7.805381457 7.910232929 8.442092594 8.581806968 7.930459335 8.700397381 7.933995691 7.805067646 8.166802133 166408392 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 8.788575719 8.741878801 8.660990759 7.974919427 7.991445192 8.005519558 7.89932822 7.820095261 8.259646273 8.053463821 7.901649174 8.253251205 115422926 nmoA Organic Remediation Aromatics Nitoaromatics Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 8.378051953 8.48460591 8.763469847 8.046893174 8.262324225 8.446315852 7.993519 8.697049075 8.0991624 8.382482724 8.566212637 8.069846903 217977929 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 9.331292035 9.323216975 9.367923377 9.011376693 8.807794972 8.871960309 8.776616999 8.900057057 8.945467033 9.078776876 9.144759895 9.096317807 77381140 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.915777508 9.139001275 9.213056755 8.433079388 8.637263734 9.079583775 9.619718421 8.893728863 9.48908021 8.746991842 8.627201774 8.987458851 86135971 phn Organic Remediation Herbicides related compound Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.517929459 8.521916563 7.985922358 7.970573987 7.662196598 7.94855917 7.839297996 8.000047082 8.041615617 154310361 nagG Organic Remediation Aromatics Aromatic carboxylic acid Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 8.802392641 8.623106678 8.80345364 7.935797519 7.899933118 7.87138424 7.624001696 7.462517568 7.966343011 7.550590493 7.639321614 8.115274827 90023293 mer Metal Resistance Mercury Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 9.788803781 9.741790654 9.976505156 9.359219625 9.029903348 8.932962022 8.962514959 8.869805925 8.807509071 8.95387986 8.979089568 9.354687448 54015812 sigma_24 Stress Sigma factors Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 11.45587329 11.31789454 11.38013466 11.16117722 11.34585915 11.20329291 10.6174507 10.84389822 11.49637026 11.24000586 11.16523346 11.12139511 90424640 nagG Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.249890965 9.773147012 9.370492117 8.879525594 9.036241428 9.515432792 9.829997561 9.290592358 9.459195917 9.275353424 9.509576867 9.295192897 86568013 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia sp. CcI3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.563767049 8.464973948 8.43951182 8.089497601 8.182338934 8.29982425 8.29380865 7.748231742 8.636598454 8.142966064 8.081574197 8.247381124 40743871 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 8.822485821 8.759688487 8.922025125 8.555495139 8.694121875 8.678744454 8.340308262 9.023863617 8.734738107 8.726256746 8.831364247 8.486521258 209885445 SMR_antibiotics Antibiotic resistance transporter Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 8.237801666 8.215745371 7.559631309 8.252428893 8.046393252 8.044348756 6.699405212 8.181399782 7.156716146 7.452972903 7.984804635 10639376 ATP_binding_protein_related_resistance Bioleaching Antibiotic Resistance Thermoplasma acidophilum;Thermoplasma acidophilum DSM 1728 8.189515824 8.196908943 8.422848357 7.819681663 7.421253476 7.954037725 7.992399313 7.51589599 7.931821164 7.426932814 7.412052505 6.956073317 50085487 CopA Metal Resistance Copper Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 8.283344399 8.186592534 7.985536899 8.144044675 7.488432133 8.149572809 8.213736635 8.075606716 7.829033064 115379677 sigma_24 Stress Sigma factors Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 9.315281194 9.431493898 9.43176992 9.656334782 9.562965652 8.935075595 9.518482009 10.15844865 9.367257337 9.883551134 9.82105162 9.776582871 39648976 SilA Metal Resistance Silver Rhodopseudomonas palustris CGA009 8.393887457 8.527449154 8.451586367 7.927577083 7.829702647 8.36816008 8.45791123 7.775355039 8.603216021 7.947232952 8.007565554 7.861371672 240278619 endochitinase Carbon cycling Carbon degradation Chitin Ajellomyces capsulatus H143 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 9.689079777 9.717346652 9.597120992 9.615350427 9.520081497 9.671915147 9.954327738 9.717034316 10.29080449 9.703808304 9.642271579 9.620947801 157320222 CadA Metal Resistance Cadmium Serratia proteamaculans 568 9.046736172 9.811707645 8.871590595 8.624393616 8.309925717 9.031641601 134101441 NirB Nitrogen Assimilatory N reduction Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 9.340097309 9.393944021 9.010872731 9.025189459 8.659424262 8.931315577 9.146058628 8.933749636 9.020353641 9.288475617 9.336822335 9.3615821 214036450 mer Metal Resistance Mercury marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 9.45162097 9.009000855 8.980647134 8.715258619 8.347689636 8.170807562 167367095 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.244243535 8.198313342 8.340782159 7.925700546 8.032752109 7.852916074 7.941740731 7.890221083 7.854580368 8.212327746 8.004541908 7.739240141 260677272 iro virulence Brucella abortus bv. 6 str. 870 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Brucella;species:Brucella abortus; 8.150377653 8.592955422 8.649403368 7.231535097 7.844740358 8.396517477 8.19272238 7.544325608 8.463491489 7.566078152 7.399087302 8.334846039 189348092 pcpE Organic Remediation Herbicides related compound Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 8.376017236 8.24254664 8.234350307 8.065278069 7.391170951 7.788507881 8.249369578 8.250101215 8.215035978 8.199414966 134291561 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 10.24058234 10.07104411 10.13501485 9.371701621 9.1797733 9.324784171 9.278850292 9.281964914 9.515031385 9.741626085 9.960870175 9.889411054 219864852 cadBD Metal Resistance Cadmium Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.419816344 8.341086252 8.208575842 7.91052915 8.298419199 7.403877895 7.610679417 7.902216387 8.015593658 8.009149778 8.066386897 229818349 amyA Carbon cycling Carbon degradation Starch Bifidobacterium angulatum DSM 20098 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium angulatum; 9.418395133 9.202246539 9.521090437 9.930108801 8.923693896 8.510493193 939838 BADH Organic Remediation Aromatics Other aromatics Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.445904231 8.571294625 8.80844124 8.183188113 8.219940733 8.021416752 8.075285873 8.020425828 8.019382048 8.019132803 7.885712789 8.304370579 29425808 helicase_P4alpha_type Bacteria phage REPLICATION Mycobacterium phage Barnyard order:Caudovirales;family:Siphoviridae; 7.306612365 6.998222081 6.857964296 6.565490345 7.567505796 84663915 sigma_32 Stress Sigma factors Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.792983911 9.117989291 8.51890226 8.959421315 8.421918103 8.825664701 8.83650094 8.993264932 8.802500098 8.705089124 225138011 AceB Carbon cycling Carbon degradation others Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 9.592758608 9.625844749 9.693582354 9.497346885 9.396021018 9.289655861 9.34519838 9.820511834 9.669208732 9.621520321 9.540052774 9.593670224 1841362 tdnB Organic Remediation Aromatics Other aromatics Pseudomonas putida 8.417721096 8.23266323 8.380954339 8.340666133 8.346321454 8.271251615 8.134202124 8.478437313 8.374677003 8.368297459 8.325209101 8.300425835 206676661 ureC Nitrogen Ammonification Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 9.453783436 9.651474023 9.804584293 9.20513034 9.061856188 9.189966043 9.623176279 9.946506739 9.605890358 9.656278901 9.524548098 9.72562945 30267722 tfdA Organic Remediation Aromatics Chlorinated aromatics Streptomyces hygroscopicus subsp. yingchengensis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces hygroscopicus; 8.261357564 8.255305199 8.361295344 8.371360394 8.331191483 8.16453069 8.075701618 8.786267396 8.407001218 8.694409822 8.291238045 8.459595911 146310242 dnaK Stress Heat shock Enterobacter sp. 638 8.204447666 8.032628167 7.233130476 7.377180236 7.612809247 7.525394446 7.076754702 7.793553474 7.425194444 7.536697411 7.568913615 90195860 limEH Carbon cycling Carbon degradation Others Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 10.268846 10.14255498 10.01457765 10.09659867 9.979231088 9.79302826 9.963340277 9.812992569 10.09260202 10.07615878 10.20213756 9.912222565 119862693 AceA Carbon cycling Carbon degradation others Psychromonas ingrahamii 37 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas;species:Psychromonas ingrahamii; 9.075652203 9.06849502 8.858479697 8.526232182 8.467177108 8.704016765 9.067257918 8.773323155 9.167735154 8.873406698 8.983102823 8.947946652 168193824 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 8.7164219 8.629624891 8.892583691 7.975762893 8.11764523 8.355790842 8.543751656 8.555860293 8.313262464 8.397517599 8.581130844 8.499447467 154351187 perR Stress Oxygen stress Bacillus amyloliquefaciens FZB42 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 9.397445777 9.271440193 9.497104889 8.803981952 8.583711971 8.59872515 8.657400963 8.70789626 8.577063562 8.498991999 8.622079383 8.870248892 219549658 pilin virulence pilin Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 8.703851017 8.478212371 8.452282034 8.040541465 7.811851916 8.407016345 8.319923132 7.94446189 8.472228083 7.892900927 8.155078274 8.021869887 242770468 MFS_antibiotic Antibiotic resistance transporter Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 8.678759171 9.217845746 8.199949737 8.795876793 8.661420886 7.686353983 9.022247465 187424769 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Akkermansia muciniphila ATCC BAA-835 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Akkermansia;species:Akkermansia muciniphila; 7.37521817 7.335958619 7.308785524 6.913280271 7.221906167 7.812361398 7.154614752 7.10909915 110819766 chnB Organic Remediation Other Hydrocarbons Rhodococcus sp. RHA1 8.286203342 8.270716616 8.609659013 7.79165072 7.813830886 7.858491381 7.656280178 7.628778833 7.93642209 7.814593146 7.896848109 7.885739098 67084744 ZntA Metal Resistance Zinc Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 8.23025618 8.332085666 8.103401919 7.932588071 7.948520436 8.155208029 7.890474771 8.012101151 8.032844384 8.266806045 56798881 catechol_B Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 9.275352649 9.298544023 9.294205944 8.966602643 8.961180927 8.855405334 9.539107774 9.12049388 9.260393123 9.066740373 8.954789366 8.858509719 120595854 CopA Metal Resistance Copper Polaromonas naphthalenivorans CJ2 9.998980519 9.745568081 9.817295471 9.606818849 9.640913656 9.479653012 9.462597173 9.574902285 9.486132201 9.592869055 9.677337386 9.769375605 121495592 narG Nitrogen Denitrification uncultured bacterium 9.057823917 9.186995602 8.920317711 9.273162677 8.697434726 8.496357547 9.258638731 8.687931839 9.056908798 8.950383609 8.467557323 188997117 sigma_70 Stress Sigma factors Sulfurihydrogenibium sp. YO3AOP1 8.326148236 8.321048747 8.691266993 7.863965524 7.971913089 7.807480965 7.59408133 7.523031694 7.783725942 56477835 sigma_32 Stress Sigma factors Aromatoleum aromaticum EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 8.392251628 8.884083441 8.866900208 8.35379992 8.530452862 8.839140488 8.808658459 8.508047199 8.928118311 8.705512984 8.676644688 9.020090421 237802400 AceB Carbon cycling Carbon degradation others Pseudomonas syringae pv. oryzae str. 1_6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 9.472287962 9.597355072 9.533303959 8.550132182 8.402237901 8.499018656 8.492599771 8.369883106 8.583150315 133919232 bclA Organic Remediation Aromatics Aromatic carboxylic acid Stigmatella aurantiaca superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella; 8.942918282 9.049619129 8.933640461 8.975114846 8.747294311 8.620192518 9.038297371 8.860981006 8.773823869 8.851446401 8.958075265 8.712976229 10441044 pmoA Carbon cycling Methane Methane oxidation uncultured methanotroph 'type 2' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae; 7.979803445 7.907927949 7.280747145 7.015921418 146400742 LpxB Bioleaching other category Acidiphilium cryptum JF-5 7.831429602 8.212754208 7.938907976 7.99344782 7.85141977 7.601537618 7.753625076 7.981224229 7.895825764 219114643 SMR_antibiotics Antibiotic resistance transporter Phaeodactylum tricornutum CCAP 1055/1 superkingdom:Eukaryota;phylum:Bacillariophyta;class:Bacillariophyceae;order:Naviculales;family:Phaeodactylaceae;genus:Phaeodactylum;species:Phaeodactylum tricornutum; 8.725572802 8.280746432 8.621969718 8.026517205 8.280777652 7.939226082 8.107166026 7.845655621 8.196211917 8.046102163 8.189409578 83836741 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 8.668913261 8.567774375 8.689803399 8.074827349 8.077434746 8.131356618 8.20836699 7.973305304 8.441928248 8.141985154 8.145546253 8.118575954 109898865 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 8.527868311 8.47150192 8.588099224 8.034846993 7.817822338 8.006228936 7.531341873 7.47477457 8.006439418 7.303337465 7.566946027 7.835159308 149783097 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.105309012 9.148250003 9.37884577 8.455107941 8.91827716 8.906533098 8.550247349 9.327141419 9.000728503 9.244430912 9.321274104 217503018 bphA Organic Remediation Aromatics Polycyclic aromatics Methylocella silvestris BL2 8.844895027 9.140300654 8.561610521 7.939153708 7.69443733 7.537987435 8.432667227 8.006697373 227069667 NiR Nitrogen Assimilatory N reduction uncultured archaeon 8.278875335 8.234054235 8.293869468 8.011033576 7.839418276 7.575935511 7.583440136 7.5056677 8.056477658 7.582910879 7.725991698 7.403393343 219932617 clpC Stress Protein stress Mycobacterium leprae Br4923 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium leprae; 9.081964998 9.014477018 8.653852977 8.94539995 8.852774096 9.008587122 8.180404505 8.971651622 8.22541305 8.801038139 9.115647285 8.337611285 89360616 dehH109 Organic Remediation Chlorinated solvents Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.289411122 8.334278523 8.264417496 8.054514838 7.95446702 7.961412845 7.783126008 8.227368879 7.958982111 8.245712431 8.225671896 8.133254103 255333671 katE Stress Oxygen stress Hyphomicrobium denitrificans ATCC 51888 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 8.088330127 8.52140533 8.281843983 7.629778455 7.957966618 7.84384303 8.033658872 7.401547291 8.358119511 7.726630481 7.729757251 7.58188436 119867880 pcc Carbon cycling Carbon fixation Mycobacterium sp. KMS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 9.084623159 9.020307437 8.593318874 8.589288855 8.700003845 8.748849724 8.378564392 8.62591927 8.356827228 8.936423077 8.980324085 8.767092866 158187217 nagK Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. NCIMB 10467 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.555549013 8.565105138 8.901082739 7.875185222 8.079103854 8.157925592 8.207124084 7.730581026 8.368976295 7.772950138 8.087554155 8.217158033 54026830 ppx Phosphorus Phosphorus utilization Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 8.593956573 8.270863572 7.662611841 7.83431996 8.115416036 8.039337084 7.58800553 8.063931031 7.849143534 7.668473664 7.827641789 119816418 atzC Organic Remediation Herbicides related compound Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.913825184 9.347758213 9.115105608 8.610727844 9.075914666 9.341469595 9.624887613 8.965215701 9.40626231 8.708111165 8.890852597 8.912395205 85857973 pstB Stress Phosphate limitation Syntrophus aciditrophicus SB 8.461589564 8.31012549 8.578012249 7.738361084 7.807347772 7.991123408 8.081261207 7.500741476 8.500116849 7.821363366 8.054371041 8.070861707 88771705 rubisco Carbon cycling Carbon fixation Thiovibrio halophilus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Thiomicrospira; 8.468680139 8.516819636 8.301933055 8.186806086 8.45251024 8.199081131 8.299414748 8.442631536 8.388313627 8.300326079 8.329152454 8.174791551 71848870 rubisco Carbon cycling Carbon fixation Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 8.781711663 8.670640434 8.796159356 8.220966828 8.291517335 8.438230819 8.407905947 8.502029963 8.138634797 8.635715712 8.485658428 8.44811225 69934171 nagI Organic Remediation Aromatics Aromatic carboxylic acid Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.540150632 8.425514746 8.642797087 8.220077621 8.276278846 8.177752855 7.481068319 7.716316749 7.902133617 7.810447096 8.124225992 8.111285404 189422403 amyA Carbon cycling Carbon degradation Starch Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 8.679487783 8.749698053 8.489960317 7.948836781 7.76512008 7.899690157 8.072891902 7.831898876 8.311869563 7.840463666 8.103049153 226870051 AceB Carbon cycling Carbon degradation others Actinosynnema mirum DSM 43827 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinosynnemataceae;genus:Actinosynnema;species:Actinosynnema mirum; 10.09479081 10.08143844 9.825153475 9.72437984 9.789145108 9.6565147 10.04228675 9.827574657 10.10615668 9.803679837 9.812906289 9.815377219 119371710 narG Nitrogen Denitrification Dechloromonas denitrificans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas; 8.657951395 8.894283874 9.008579066 8.89298999 8.697733481 8.191348901 8.786196789 9.104904504 8.85911587 8.653448755 8.627139974 8.922743379 196194800 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Alcanivorax sp. DG881 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 8.356487625 8.37060484 8.091303347 8.167673207 7.960545805 7.270998074 7.322127765 7.893736638 7.343171983 7.48805224 7.662306558 134300136 pstA Stress Phosphate limitation Desulfotomaculum reducens MI-1 8.56136009 8.474757035 8.928120445 8.207016853 7.933297132 7.87302737 7.5349292 7.713677779 7.855641242 85672710 pcc Carbon cycling Carbon fixation Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.210528078 8.049584495 8.149397944 7.897964907 8.252788919 8.241663398 8.167213059 8.280954601 8.230542571 8.226978594 7.579900853 260577202 oxyR Stress Oxygen stress Rhodobacter sp. SW2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 8.227443493 8.142358461 7.717481058 7.702308571 7.237135719 7.823332804 7.451945527 7.291353521 7.501107427 7.494910176 22299896 obgE Stress Radiation stress Thermosynechococcus elongatus BP-1 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Thermosynechococcus;species:Thermosynechococcus elongatus; 8.723037464 8.563242069 8.488348374 8.354507569 8.052341221 8.02094054 46203679 ZntA Metal Resistance Zinc Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 8.362837281 8.324405382 8.066046141 8.127182382 8.509634206 8.46197973 8.33796668 8.693519183 8.578336729 8.592948757 8.744046353 8.64553691 255262676 pstC Stress Phosphate limitation Thalassiobium sp. R2A62 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Thalassobium; 8.590352522 8.487310634 8.330176637 7.969418556 8.036419759 8.095819671 8.239076495 8.089102559 8.330409924 8.184020159 8.165568629 145305305 hrcA Stress Heat shock Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 8.993193517 8.502441438 8.565922914 8.622569867 8.601977222 8.537376744 8.268970527 8.458227333 8.305766355 8.497870255 8.404115472 8.336340527 253701007 sigma_38 Stress Sigma factors Geobacter sp. M21 8.400599325 8.840180268 8.462005513 7.784788319 7.802453761 8.052768243 8.44922273 8.008249103 8.013929465 7.967994487 8.131569913 8.007624849 78218561 APS_AprB Sulphur adenylylsulfate reductase Desulfovibrio desulfuricans G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 7.851647758 7.776844425 8.30738818 8.598759701 8.143194803 8.383320681 8.070483153 8.075876616 7.961234885 157408057 amyA Carbon cycling Carbon degradation Starch Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 8.757817107 8.700432933 8.669233607 8.832295925 9.041115964 9.046743815 8.627405602 9.08954176 8.708346547 9.128941123 8.991268349 9.137276433 126714079 phoB Stress Phosphate limitation Roseobacter sp. CCS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.53352356 8.454418155 8.318129539 7.772287658 7.685762649 7.90860148 8.029373071 7.856608185 7.824931837 7.725271529 7.937908285 7.932325177 169757354 oxyR Stress Oxygen stress Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.276246542 8.064325902 8.289341888 7.959681036 8.061766274 8.483159603 8.134240798 8.325566022 8.02581987 8.120654309 8.747654529 8.308539915 73762956 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.861343429 8.526599475 8.648419915 8.402614156 8.272301837 8.431097221 8.53340402 8.149013312 8.632897437 8.244423653 8.515531934 8.399033636 19909689 gyrB other category gyrB Halorubrum saccharovorum superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum; 8.759423412 8.73295842 8.417348586 8.501391988 8.396588352 8.305377674 8.082213177 8.434468949 8.457220725 8.347347868 8.173413773 18072148 glnA Stress Nitrogen limitation Mycobacterium bovis BCG 8.57339703 8.445471617 8.753619616 7.73997117 7.613685685 7.866263167 7.723741703 7.433330916 8.142313903 7.470863587 7.48372074 7.655606701 194564761 ChrA Metal Resistance Chromium Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 8.620349262 8.596438211 8.33856055 8.594643293 8.525037893 8.313529103 8.269909983 8.740740464 8.437277803 8.746693533 8.570856941 8.590763849 186970916 hly virulence hemolysin Elusimicrobium minutum Pei191 superkingdom:Bacteria;phylum:Elusimicrobia;class:Elusimicrobia;order:Elusimicrobiales;family:Elusimicrobiaceae;genus:Elusimicrobium;species:Elusimicrobium minutum; 8.91507234 8.754239417 8.843442983 8.711294492 8.671766901 8.479386657 9.252393087 9.10620451 8.743294944 8.852450636 9.010795593 8.552884454 86606217 pstC Stress Phosphate limitation Synechococcus sp. JA-3-3Ab superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.651524641 8.569186518 8.559459303 8.446673247 8.178064327 7.904338935 8.209753271 8.235867586 8.328250757 8.256728908 8.046234036 8.188630746 257050889 hrcA Stress Heat shock Leptotrichia buccalis DSM 1135 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteria;order:Fusobacteriales;family:Fusobacteriaceae;genus:Leptotrichia;species:Leptotrichia buccalis; 9.455249277 9.303936201 9.532491366 8.914694646 8.841798456 8.760868406 8.474565645 8.375153017 8.668677197 8.679673852 8.697546259 8.940253948 111023889 grpE Stress Heat shock Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 9.894898253 9.764878785 9.984140618 9.337771412 9.193476864 9.170814 9.074809775 8.918243158 9.102228572 9.207769068 9.26765779 9.37946248 197723327 pulA Carbon cycling Carbon degradation Starch Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 9.600292661 9.170419141 8.86967011 9.549604102 9.535669063 9.268063993 9.643248542 9.404670331 9.048201725 9.307739441 9.434842573 9.33453903 196185698 sigma_32 Stress Sigma factors Brevundimonas sp. BAL3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas; 8.126660588 8.15485281 7.711876538 7.992944986 7.877674623 7.610059323 8.040012638 8.18874358 8.124310594 7.825829028 7.713894877 28971837 xylJ Organic Remediation Aromatics BTEX and related aromatics Sphingomonas sp. P2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.829726571 8.662072905 8.781415564 8.448203814 8.101281515 8.125104516 8.323103688 8.262769744 8.241353926 8.293551526 8.295902279 8.51329613 113529205 pnbA Organic Remediation Aromatics Nitoaromatics Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.903018789 8.810955102 8.934591915 8.500986275 8.800670618 8.695137536 8.354386207 8.388974625 8.234959169 8.425704434 8.611856426 8.749433001 188480949 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 8.564422489 8.578914468 8.001906052 7.840119532 7.966135623 8.399672227 8.009622514 8.814730378 7.560300339 7.775384128 7.476083286 126464149 nitA Organic Remediation Aromatics Other aromatics Rhodobacter sphaeroides ATCC 17029 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 8.713746516 8.656028121 8.688163833 8.394179504 8.579713167 8.376497081 7.95957314 8.590261649 8.299560879 8.394610009 8.231504584 7.898852393 159184527 hly virulence hemolysin Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.639964506 8.624242537 8.842877295 8.32804018 8.519397443 8.23272585 8.573120848 8.812544501 8.684118415 8.657420724 8.487205134 8.30515942 146190249 P450 Energy process Energy process Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 9.732406254 9.598148542 9.887954925 10.3506723 10.38986102 9.967703707 10.67626296 10.19106082 10.49988452 10.10200879 10.35894446 33456990 bphA Organic Remediation Aromatics Polycyclic aromatics Cycloclasticus sp. A5 8.817381842 8.683510126 8.753626132 7.678497028 7.440308587 7.827316756 8.557939069 7.695953892 7.873492913 7.787850271 7.819352904 8.080932615 115422862 nagI Organic Remediation Aromatics Aromatic carboxylic acid Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 8.665930611 8.83908391 8.635135646 8.444011908 8.600059231 8.51981172 8.490552194 8.707457895 8.59105826 8.540478958 8.507279658 8.517339494 241215212 grpE Stress Heat shock Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 9.476150917 9.491023302 9.658881855 8.905245395 8.813940738 8.846512552 8.581564826 8.64957114 8.619042479 8.648546132 8.680020624 9.079663359 77458043 CopA Metal Resistance Copper Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 9.286414952 8.379212502 8.879066404 8.677032713 8.501757995 8.170466491 8.648335929 8.722049385 8.435671518 8.62551073 8.487244115 8.341637617 197696889 TerD Metal Resistance Tellurium Streptomyces sp. SPB74 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 9.537224506 9.403307828 9.378636648 8.831680832 8.997938405 9.076000666 9.193175816 8.493061282 9.052691828 8.765154618 8.887348574 9.010879143 53758371 pstC Stress Phosphate limitation Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 9.130581952 9.038909645 9.151689169 8.954339489 8.78259824 8.829643626 8.666346189 8.781132599 8.391849695 8.720577924 8.707540872 8.766000746 114739561 nagG Organic Remediation Aromatics Aromatic carboxylic acid Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 8.765398019 8.295259208 8.641990452 8.614515079 8.425214556 8.17553368 8.627284652 8.350846841 8.563305892 8.507046604 88707106 ZntA Metal Resistance Zinc gamma proteobacterium KT 71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 8.033869016 8.586830441 7.668897517 7.74069798 7.562920912 7.537860262 7.617753074 7.962367148 7.766988915 7.472100703 7.605348916 67540632 pheA Organic Remediation Aromatics Other aromatics Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 8.691849677 8.368854286 8.552120888 8.194255599 7.861865328 8.524249273 8.334510478 8.546427178 7.905144005 8.004289215 7.78840955 158314743 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.439746551 7.996303806 8.157934002 8.205924195 7.707979456 8.24831477 8.005641919 7.85234082 7.987091488 7.746765773 7.958854464 146341750 nmoA Organic Remediation Aromatics Nitoaromatics Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.788524548 8.053546901 9.004556861 8.707724228 8.518075958 8.822502435 8.683534792 8.397684305 8.40394555 8.477770762 8.242936024 197702316 pstC Stress Phosphate limitation Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 8.906689184 8.356978037 9.005571713 8.065259667 8.714817465 8.877626097 9.212257853 7.992606732 9.177491624 8.453761071 8.250667985 87331934 carA Organic Remediation Aromatics Heterocyclic aromatics uncultured bacterium superkingdom:Bacteria; 8.677431566 8.43607068 8.737886168 8.125712685 8.152052754 8.348461206 8.427287893 7.508914804 8.444832306 8.068820518 8.044036271 8.063539876 86138930 glnA Stress Nitrogen limitation Roseobacter sp. MED193 9.040846581 9.025726256 8.976069691 8.586935315 8.326999227 8.596856329 8.420608326 8.138964056 8.656351316 8.059441634 8.190772762 8.577258837 218251368 dsrA Sulphur sulfite reductase Mitsuokella multacida DSM 20544 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Mitsuokella;species:Mitsuokella multacida; 8.928401633 8.853576494 8.777919472 8.556186321 8.400087203 8.364854641 8.513877995 8.547970159 8.523493699 8.592259289 8.656063493 8.544047547 118667820 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.775626726 8.611418258 8.729675542 8.368923792 8.474010586 8.145226205 8.175363374 8.319726735 8.215828779 8.501057378 8.482032434 8.70330208 221083076 nitA Organic Remediation Aromatics Other aromatics Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 8.643105154 8.676245275 8.516268142 8.837643511 8.635341697 8.742470938 8.796719702 77456903 trzN Organic Remediation Herbicides related compound Pseudomonas fluorescens Pf0-1 9.842216997 9.244725959 9.550772568 9.64812479 9.617359704 9.508332085 149279472 phoA Stress Phosphate limitation Pedobacter sp. BAL39 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter; 9.019676089 9.126555882 8.996295732 8.521602967 8.458894512 8.15053581 8.452604265 7.221757021 8.548524795 8.464669315 8.592349335 221133583 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Glaciecola sp. HTCC2999 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola; 8.387723484 8.504592241 8.573023977 8.649044476 8.727576908 8.736482954 8.871061266 8.940017474 8.787772155 9.136678908 8.911391717 8.822694942 12659186 nifH Nitrogen Nitrogen fixation Treponema denticola superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema; 9.283252604 9.178016198 9.113421028 8.65202429 8.512535248 8.48210525 8.447078477 8.39349708 8.520835936 8.25344149 8.277348168 8.710927346 260770175 ahpF Stress Oxygen stress Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 9.187997979 9.205632938 9.157950392 8.768371058 8.376445941 8.505862173 8.396722387 8.356238716 8.535538332 8.895607229 8.867233227 257452542 obgE Stress Radiation stress Fusobacterium sp. 3_1_5R superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteria;order:Fusobacteriales;family:Fusobacteriaceae;genus:Fusobacterium; 8.829853628 8.61935585 8.697795847 7.769648497 7.871452589 8.002798099 7.550932377 7.475794541 8.419936562 7.634869954 7.725893511 8.032191295 258513489 pstB Stress Phosphate limitation Desulfotomaculum acetoxidans DSM 771 8.357145709 8.229641227 8.38436831 7.883873269 7.880492676 7.804783879 7.356953156 7.951764715 7.995738147 7.882231896 197712606 mannanase Carbon cycling Carbon degradation Hemicellulose Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 8.747422441 8.985205856 9.098324505 8.679159793 8.583562024 8.518874746 8.474684371 8.321500362 8.720903357 8.488357902 8.366572053 8.570121606 229784240 pstB Stress Phosphate limitation Bifidobacterium angulatum DSM 20098 8.504522177 8.368991965 8.488696436 7.917098689 7.916906766 7.682107136 8.147129078 6.80209214 8.511610459 7.212198696 7.396108073 7.7612368 171097765 CopA Metal Resistance Copper Burkholderia ambifaria MEX-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 8.058364473 8.465159031 8.240140979 7.72604892 7.71825341 8.131024682 8.251377676 7.735536597 8.621694345 7.745791313 7.935243747 7.87229007 144900406 sigma_70 Stress Sigma factors Magnetospirillum gryphiswaldense MSR-1 8.04488212 7.986428091 8.205258431 7.913940624 7.421999744 7.673196027 7.543294275 7.351403083 7.931133744 7.528964795 7.617491451 7.837151826 29565736 lysin Bacteria phage LYSIS Staphylococcus phage 44AHJD order:Caudovirales;family:Podoviridae;genus:AHJD-like viruses; 8.933951191 9.108470031 8.851193427 8.690189842 9.043777702 9.122526492 9.496424441 9.371482571 9.223627904 9.639364479 9.544124389 9.600198079 115401174 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 9.619216312 9.521370422 9.183691224 9.581409411 9.508867217 9.668264767 9.104939282 9.750955828 9.223869639 9.450181684 9.829199455 9.240483129 145319978 ureC Nitrogen Ammonification Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 8.373650337 8.429741657 8.268789449 8.407595294 8.449112212 8.311646168 8.45602943 8.650437269 8.313062974 8.507035848 8.371891055 8.537445066 148558144 pcaG Organic Remediation Aromatics Other aromatics Brucella ovis ATCC 25840 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Brucella;species:Brucella ovis; 9.52097927 9.70093338 9.690565671 8.824237231 8.773955861 8.908114505 9.187336966 8.873708779 9.146927977 8.844798882 9.038052777 9.151570693 85703610 AceB Carbon cycling Carbon degradation others Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.904563596 8.865527829 9.038136121 8.750998922 8.596605945 8.331393314 8.780123679 8.495456956 8.664941456 8.645402664 8.497981484 8.561941096 159883063 atzA Organic Remediation Herbicides related compound Hydrogenivirga sp. 128-5-R1-1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenivirga; 9.085280992 9.075339081 9.003732521 8.697152181 8.493244901 8.748508702 8.423062097 8.487913754 8.248491709 8.576141134 8.470153986 8.777049749 99083155 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.909365155 8.73179789 8.923949348 7.732617734 7.93243563 7.992587833 8.173240944 7.911271912 8.610295553 8.214939212 8.376108811 8.32914289 118736884 ChrA Metal Resistance Chromium Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 8.649389314 8.481522766 8.551679252 8.008822176 8.004793097 7.902469851 7.852343721 7.694000485 8.253081465 7.730476407 7.61135528 8.079459876 183580154 nahA Organic Remediation Aromatics Polycyclic aromatics Kocuria rhizophila DC2201 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 9.661802229 9.640737032 9.652561717 9.285236138 9.02876889 8.804625755 8.997780829 9.056819511 8.873970446 9.053931876 8.940792539 9.148082429 83839670 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 8.656750366 8.73783099 8.650580792 8.077871445 8.524562031 9.03464062 7.079707378 8.820437917 7.902398091 8.299372398 8.073971234 35214934 sigma_70 Stress Sigma factors Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 8.299856657 8.165847427 8.171903589 7.643322599 7.829902862 7.690604158 7.754616357 7.988297576 8.130518456 7.684823742 7.693757494 7.859995946 38427034 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.323104278 8.336393335 7.95626078 8.065040449 7.899914131 8.40105667 7.519232698 8.449750613 7.976791203 7.880535818 7.936345882 207725024 proO Organic Remediation Aromatics Other aromatics Ralstonia solanacearum MolK2 8.572224491 8.591093397 8.77755074 8.254170595 8.349335028 8.130625584 8.203678986 8.213167608 8.40263478 8.389485709 8.204723797 8.336260803 223414530 mer Metal Resistance Mercury bacterium enrichment culture clone IC10Bj1P3 8.874912088 9.08132597 8.652225435 8.671405259 8.814846035 8.521989819 9.391694554 9.159071021 258513491 pstC Stress Phosphate limitation Desulfotomaculum acetoxidans DSM 771 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum acetoxidans; 8.474267205 8.316814296 8.450775619 7.920093138 8.202936453 8.119917914 8.352665208 7.46752692 8.659839948 8.092156011 8.089733498 8.205499101 110285204 glnA Stress Nitrogen limitation Mesorhizobium sp. BNC1 9.418443227 9.06171746 8.826585747 9.130292611 8.96151054 8.719075357 9.009624961 8.906205494 8.60256382 8.949412311 8.867794298 8.838595697 84694970 CopA Metal Resistance Copper Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8.478256507 8.613506771 8.510117877 8.261800504 8.172193684 7.976387555 7.966758339 8.540807924 8.031845874 8.23511205 8.065743622 8.26198073 114226889 sigma_24 Stress Sigma factors Alkalilimnicola ehrlichii MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 9.539161439 9.419465887 9.446316547 9.521227169 9.412703188 9.058875658 9.497572969 9.711616135 9.422219793 9.601904863 9.417155978 9.467398412 192764352 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.062466503 8.875238425 9.068761494 9.022959882 9.024047547 8.701616485 9.114523345 8.83055554 8.744293577 9.019349133 8.925276558 8.80748329 89347395 pcc Carbon cycling Carbon fixation Rhodoferax ferrireducens DSM 15236 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 8.760358732 8.993540542 8.874344666 8.476814093 8.475388043 8.349129085 8.424148963 8.274932385 8.518115994 8.321990487 8.278473266 8.512271987 151283004 iro virulence Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 9.56258856 9.742372263 9.726397927 8.889363536 8.964922657 9.127964157 9.176120582 8.816518997 9.163209844 8.843982873 8.992994154 9.264055561 159043291 ppx Phosphorus Phosphorus utilization Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 9.699985837 9.657478155 9.797088522 9.047085419 8.921051625 9.014806626 8.585845387 8.8722074 8.730037792 8.884637741 8.9549876 9.234168448 59044731 pectinase Carbon cycling Carbon degradation Pectin uncultured bacterium superkingdom:Bacteria; 8.220371733 7.890011706 8.316739407 7.717998069 7.820079464 8.087860752 7.292027296 7.993563335 8.350739115 7.713944848 7.689476929 7.602202137 118725042 silP Metal Resistance Silver Shewanella oneidensis MR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella oneidensis; 8.365340195 8.011465668 7.701012024 7.495520083 7.574896561 7.620514357 6.96768219 7.898478662 7.345351142 7.377104897 7.330196953 126347651 sigma_24 Stress Sigma factors Streptomyces ambofaciens ATCC 23877 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ambofaciens; 8.740736918 8.665595102 8.341408736 8.33380521 8.462677914 8.253459479 8.340261852 8.280836173 8.114473193 121704164 nmoA Organic Remediation Aromatics Nitoaromatics Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 8.343337237 8.520341728 8.59066262 9.019212846 9.066165603 8.820152636 8.943643718 8.639534832 8.528821181 221636194 alkK Organic Remediation Others Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 9.093793843 9.223555936 9.358478627 8.36372855 8.303797438 8.224396311 8.129772734 8.130942488 8.228511957 8.337976851 8.417494508 8.50505328 256039439 fnr Stress Oxygen stress Chitinophaga pinensis DSM 2588 7.96434687 7.867533854 7.61662459 7.394327702 7.362675164 6.969447414 6.960988082 7.564759901 7.349656939 6.856908067 7.332769963 142852780 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 8.361666485 8.590810961 8.57983481 8.191604853 8.214199812 8.124524477 8.066823676 7.922275747 8.028242925 8.23836098 8.276802124 8.2724431 32307905 narG Nitrogen Denitrification uncultured bacterium 8.009899901 7.951071088 7.063286812 7.398840447 7.564150916 7.689757883 7.595569382 7.914116343 7.720478242 7.559244498 8.049209469 87301910 fnr Stress Oxygen stress Synechococcus sp. WH 5701 8.894576843 8.510316523 9.239952065 9.151169556 9.264792014 9.148299048 9.057300255 9.5488275 9.039740598 9.221279244 9.086586351 9.198511687 264678591 iro virulence Comamonas testosteroni CNB-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.906753349 9.278278232 9.197573531 8.266743693 8.320297735 8.226834508 8.81431435 8.620731464 8.806473074 8.318188807 8.323342608 8.484446512 256357221 glnA Stress Nitrogen limitation Catenulispora acidiphila DSM 44928 8.1875965 8.092986535 8.497590363 8.183000876 7.659371519 8.104991822 8.06703913 8.373355217 8.16930243 8.044475496 7.697519163 119715071 bphA Organic Remediation Aromatics Polycyclic aromatics Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 9.261600803 9.020025072 8.593161763 8.865180797 8.89965422 220919359 amyA Carbon cycling Carbon degradation Starch Anaeromyxobacter dehalogenans 2CP-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 8.553647607 8.360801249 8.437195507 8.396128976 8.285916724 8.193367879 8.084632286 8.277330872 8.276745918 8.165102668 8.203101346 8.215502141 78513962 nmoA Organic Remediation Aromatics Nitoaromatics Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.460073432 8.522474547 8.19548552 8.274959962 8.348293196 8.626419889 8.544092801 8.723245059 8.551570318 8.897329006 8.678158225 8.81305139 192897542 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 8.617985651 8.541309859 8.217645188 7.871831081 8.038336102 7.879599439 7.73948296 7.606652571 7.994836343 7.590445916 7.729348798 7.881628847 225214208 hly virulence hemolysin Brachyspira hyodysenteriae WA1 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Brachyspiraceae;genus:Brachyspira;species:Brachyspira hyodysenteriae; 9.349920457 9.242747583 9.543876074 8.554077537 8.521259718 8.425401779 8.180237545 8.279259023 8.094318642 8.567418341 8.469479673 8.810988775 57233751 rd Organic Remediation Chlorinated solvents Dehalococcoides ethenogenes 195 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides;species:Dehalococcoides ethenogenes; 9.248231322 9.570245735 9.64272496 9.311467204 9.353703708 9.177978039 9.259537011 9.853105418 9.234758647 9.874238417 9.650347971 9.358142282 210631468 cellobiase Carbon cycling Carbon degradation Cellulose Collinsella stercoris DSM 13279 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella stercoris; 8.950641026 8.819426196 8.932295996 8.346455086 8.490004081 8.541556104 8.431342416 8.550191144 8.589142297 8.247445926 8.584004291 8.651134873 256583393 glnA Stress Nitrogen limitation Cryptobacterium curtum DSM 15641 8.893423077 8.927557374 8.683284875 8.347165539 8.393726609 8.331834403 8.068830707 8.344734028 8.234625098 7.978499664 8.122368343 8.516722908 222102574 nmoA Organic Remediation Aromatics Nitoaromatics Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 8.236600301 8.269862281 7.565989211 7.147310241 7.392054203 7.250149394 7.610324992 7.268874196 7.243560457 7.501210541 28270441 pstB Stress Phosphate limitation Lactobacillus plantarum WCFS1 8.164272833 8.054982028 7.551657429 7.309651796 7.612508943 7.603821509 7.360791767 7.760237933 7.514920884 7.49425769 7.406172532 127511603 ahpC Stress Oxygen stress Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 8.484910971 8.606177857 8.37084257 7.931265449 7.779349744 7.801507619 7.334308184 7.264025437 7.769717881 7.987552945 7.840212632 7.914786108 171691568 pheA Organic Remediation Aromatics Other aromatics Podospora anserina superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 9.329139593 9.170679269 9.320971274 8.468884669 8.262236934 8.46781409 8.997869064 8.223214372 9.083480065 9.104508547 9.439426962 68164680 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.128270497 8.641604928 8.592837136 8.404069892 8.214625552 8.116996379 7.963970221 8.081981592 8.317891436 8.059351243 7.886850308 8.259307543 109642772 ChrA Metal Resistance Chromium Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 8.318174156 8.160784515 8.064210536 7.78751283 8.131005214 8.202374581 8.149365357 8.007491321 7.793167914 7.716853489 7.993308263 209910398 toxin virulence toxin Clostridium perfringens superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 8.599411102 8.407340817 8.423908468 7.79973576 7.695894083 7.678468191 7.507089011 7.263358549 7.823291525 7.465789463 7.748154373 7.858790229 118672084 nhh Organic Remediation Aromatics Nitoaromatics Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 9.78238774 9.659228604 9.601137034 9.918439562 9.944392223 9.912195046 10.105992 10.35473479 10.11592114 10.03094276 10.01121317 10.16016349 209401858 narG Nitrogen Denitrification uncultured bacterium 8.677335149 8.640166033 8.656113467 8.419766669 8.330632086 8.441590159 8.298692897 8.321646214 8.546920432 8.453481759 8.4582311 8.503341331 256769764 sigma_24 Stress Sigma factors Streptomyces sp. C superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 9.167483069 9.283025252 9.151496703 8.864033958 8.832517689 8.77091662 9.184495061 9.221294937 149783135 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.049757695 7.830634404 8.29490567 8.46142526 8.13389145 7.963857159 8.732421118 8.112063522 8.360685682 8.178524483 8.357643214 260460584 glnA Stress Nitrogen limitation Mesorhizobium opportunistum WSM2075 8.473855012 8.419639884 8.849005423 7.614723703 7.550118728 7.766390561 7.256951731 7.132198035 7.442317903 7.742032958 8.046005042 119465388 mer Metal Resistance Mercury Nodularia spumigena CCY9414 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nodularia;species:Nodularia spumigena; 8.742842769 8.279206963 8.371341034 8.048458416 7.879614125 8.278523843 8.084752983 7.722867084 212527146 AceB Carbon cycling Carbon degradation others Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 8.417769045 8.30592373 8.487430922 7.953018772 7.968821236 7.877147503 7.767064462 7.502610279 7.875953946 7.699917977 7.639709672 7.826619401 118002791 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.021256406 8.123225864 7.830926981 7.993418775 8.206070013 8.043307795 8.392455668 8.277230537 8.532121408 8.506566956 8.356972938 86211173 gyrB other category gyrB Pseudomonas pertucinogena superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 9.460021524 9.207104973 9.534306857 8.796475098 8.728871598 8.535417076 8.57817709 8.527205148 8.594478372 8.812594618 8.788714024 9.079959076 111022363 pcc Carbon cycling Carbon fixation Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.454330611 8.229046567 8.13954216 8.398724761 7.560796127 8.272827508 8.604072501 7.892963015 8.222443285 7.770992126 7.865350452 7.589235275 163259590 hrcA Stress Heat shock Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 7.129254241 7.269878428 7.580997272 7.067534427 7.672771866 4220434 nagK Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia sp. U2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 8.78031073 8.776871263 8.430020662 7.880941447 8.125907051 8.445043421 8.694339258 7.34806337 8.358002206 8.06016447 8.001069222 8.176271827 119460638 gyrB other category gyrB marine gamma proteobacterium HTCC2080 8.96801976 8.521627346 9.189663189 8.051472276 8.202208626 7.960716946 7.189056577 7.329302419 7.095829634 7.424096666 8.366421403 188583079 fnr Stress Oxygen stress Methylobacterium populi BJ001 9.054406218 8.965864882 8.97173303 8.703621675 8.48770641 8.489131853 8.311523513 8.416669775 8.582760685 8.491159718 8.401468267 8.636621895 158315294 nmoA Organic Remediation Aromatics Nitoaromatics Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 9.23615521 9.058388062 9.156906677 8.664329798 8.705099825 8.644456021 8.830898583 8.999056056 8.84016782 8.858891894 8.693015326 8.896238486 227530191 ctsR Stress Protein stress Lactobacillus vaginalis ATCC 49540 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus vaginalis; 8.433748174 8.51866658 8.492639739 7.807649435 7.819595317 7.785183742 7.728951471 7.394545522 7.968362679 7.544451204 7.480541334 7.974385985 33565372 pnbA Organic Remediation Aromatics Nitoaromatics Bordetella parapertussis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 8.348565809 8.153724955 8.290211793 8.07089293 8.024506662 7.75314171 7.758493737 7.939189303 7.965376707 7.907676459 7.739188293 7.8634225 156869021 ara Carbon cycling Carbon degradation Hemicellulose Clostridium leptum DSM 753 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 8.746776256 8.902264236 8.954664723 8.491621872 8.356374186 8.241559613 8.241413721 8.196796285 8.357171809 8.302782798 8.464941334 8.639405198 221212711 sigma_70 Stress Sigma factors Burkholderia multivorans CGD1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 8.322135547 8.199604462 7.802287045 7.584492007 7.562385385 7.86459372 7.604564712 7.864659678 7.574713421 7.524257752 7.701499839 39974845 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 8.002423961 8.104751394 7.36921814 8.015194498 8.10699363 8.354318199 7.188714175 8.339989359 7.384265927 7.443230949 8.339036262 15842013 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium tuberculosis CDC1551 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 8.539346594 7.936796271 7.547795617 8.130368563 8.084143621 8.313196652 7.810543702 7.877456383 7.668087593 84665050 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 9.832840688 10.06218356 9.777383893 9.342515726 10.24746952 10.1952375 10.40170409 9.11827862 10.48995972 9.503349326 9.592049749 9.638811437 256670308 pstB Stress Phosphate limitation Streptomyces sp. AA4 8.727282887 8.68626118 8.824464541 8.708620183 8.484174708 8.672465345 9.088332471 8.634531586 8.815476797 8.477997383 8.459568189 8.384594868 15265 scaffold Bacteria phage STRUCTURAL Enterobacteria phage T4 order:Caudovirales;family:Myoviridae;genus:T4-like viruses;species:Enterobacteria phage T4 sensu lato; 8.980904376 9.11793002 9.410411898 8.713092528 8.759398761 8.328494886 8.522553029 8.927250611 8.677999234 8.865406319 9.029222283 8.860548713 70985925 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 9.52110079 9.668659676 9.904785326 9.088130632 8.887521999 8.77186183 8.961284261 8.821541175 8.960038586 8.900926628 8.861480535 9.040493539 46448394 TerC Metal Resistance Tellurium Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 9.077849543 9.104226668 8.77821816 8.883986026 8.680810758 8.68169912 9.039009325 8.82711721 8.816537975 9.051437804 9.179987797 8.796403224 33600822 sigma_24 Stress Sigma factors Bordetella bronchiseptica RB50 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella bronchiseptica; 10.03126383 9.798549696 9.888966124 8.649044021 8.943192445 8.893533222 9.468315539 9.082164954 9.121008121 9.380025196 9.394798883 9.504498566 262401503 pilin virulence pilin Vibrio sp. RC586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 9.153332074 9.160120941 9.321163285 8.48020855 8.630564238 8.689625887 8.175159973 8.108081619 8.38021442 8.304871596 8.582222354 83951907 ppx Phosphorus Phosphorus utilization Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 8.019985101 8.079277659 7.260873116 7.39984904 121611130 nagI Organic Remediation Aromatics Aromatic carboxylic acid Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 8.99431619 8.859231713 8.7768638 8.397845955 8.263290564 8.304821413 8.586644385 8.410545334 8.502790285 8.92928406 8.852685772 8.838934099 13474128 ureC Nitrogen Ammonification Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 7.306961025 7.577601825 7.724709693 7.594330267 7.437044621 7.875488858 7.540070385 7.831618804 7.648321785 169282 mnp Carbon cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 8.6793602 8.810632695 8.453715825 8.06535108 8.010927604 8.215008282 8.702180203 7.803945883 8.867199323 8.085426708 7.927227339 7.914124527 163261300 silC Metal Resistance Silver Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 8.936475712 8.597124564 8.409496647 8.485141209 8.072680457 8.003173212 8.248756608 8.214047462 8.572650087 7.949553953 8.04102614 8.112159293 260802026 Tet Antibiotic resistance other Branchiostoma floridae superkingdom:Eukaryota;kingdom:Metazoa;phylum:Chordata;family:Branchiostomidae;genus:Branchiostoma; 8.505521201 8.453266403 7.790814472 8.080343517 7.924183104 8.188142276 8.418701764 8.586052729 8.62479474 8.622333944 78034306 vanA Carbon cycling Carbon degradation Others Xanthomonas campestris pv. vesicatoria str. 85-10 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas euvesicatoria; 7.704850392 7.364872346 7.754774493 7.662104979 7.610163827 7.23667353 7.376384892 182678499 ChrA Metal Resistance Chromium Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 9.386532802 9.453350844 9.569584125 8.803739703 8.680692372 8.704372229 9.082667298 8.64611755 8.989879907 8.768935426 8.718097558 8.968718826 49482924 CopA Metal Resistance Copper Staphylococcus aureus subsp. aureus MRSA252 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus aureus; 8.100189225 8.289913652 7.060241264 7.284048931 7.436290969 7.205132613 7.161237347 7.662549469 7.556477514 7.304545288 7.395724338 145282905 narI Stress Oxygen limitation Pyrobaculum arsenaticum DSM 13514 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum arsenaticum; 9.080235423 9.023460456 9.221845612 8.409962592 8.160819611 8.253608787 7.921489495 7.809547595 8.297224994 8.069674539 7.981494224 8.302828147 158440007 sigma_70 Stress Sigma factors Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 8.541777485 8.53592657 8.447366872 8.64015439 8.59608608 8.656378518 8.178771709 8.764483714 8.640590933 8.844450051 8.158609058 39996436 cytochrome Energy process Energy process Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 8.80880704 8.904087687 8.611912704 8.229366313 8.321533662 8.376735316 8.222328444 8.476697022 8.679401294 8.465625907 8.439516499 8.520266978 73762878 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.564068425 8.46966137 8.691835207 7.843136915 7.201143597 8.309852547 8.155311765 7.515632442 7.819162805 8.100846406 7.932006633 89896861 pstB Stress Phosphate limitation Desulfitobacterium hafniense Y51 8.236150725 8.12638636 7.765152121 7.675894333 7.599478591 7.428170548 7.312720637 7.513450909 7.626015013 7.231551485 7.503424845 90335958 AceA Carbon cycling Carbon degradation others Aurantimonas manganoxydans SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 8.680051471 8.461472466 8.839144649 8.893772779 9.03765309 8.875768639 8.805123295 8.967519742 8.680953872 114764808 sigma_70 Stress Sigma factors Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.118928936 7.714043073 167463189 gyrB other category gyrB Paenibacillus larvae subsp. larvae BRL-230010 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus larvae; 8.473343683 8.246548974 8.654931769 7.912039204 7.827951825 7.720990379 7.928503627 7.500190634 7.983603909 7.494282037 7.531260671 7.805997882 33414818 endolysin_glycosidase Bacteria phage LYSIS Bacteriophage Aeh1 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 8.648205686 8.529893885 8.539733255 8.123034363 7.971079452 7.985120413 7.749317075 7.863798354 8.039402226 8.133151958 8.004619933 8.382665298 124267621 sox Sulphur Sulphur oxidation Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 9.355518473 9.484570127 9.170154639 8.752461984 8.777237273 8.651830332 8.676259173 8.417235223 8.554733875 8.627656185 8.948937073 5107071 exoglucanase Carbon cycling Carbon degradation Cellulose Thermobifida fusca superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida; 8.199892839 8.161517605 8.182192694 8.51755159 8.306544539 8.219007202 8.878049864 8.545175201 8.386187337 8.639185044 146405046 atzD Organic Remediation Herbicides related compound Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 9.27107456 9.249316188 9.004335812 8.856638901 9.03005939 9.0110804 8.844795521 8.924802946 9.203468863 8.905154976 9.140694406 8.993982015 240247498 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.646396357 8.301557563 8.55950673 8.156417006 7.954885876 7.878103684 8.220427418 7.544240228 7.918579716 7.878506394 7.883596641 197118545 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 8.766555446 8.7658038 8.93940063 8.364347088 8.338818498 8.236788707 7.936980035 8.163449957 8.719653744 8.122763432 8.133332167 8.315367821 222081518 Tet Antibiotic resistance other Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.744319369 8.421693708 8.830036718 8.121351675 8.197198317 8.344556191 7.833392802 8.035590029 7.99612932 8.047034519 8.399557731 8.229971862 170136901 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia ambifaria IOP40-10 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 8.51248259 8.154288465 8.351836187 8.472919709 8.502159901 8.244806899 8.430775459 8.212517868 8.349732711 8.302146286 8.242966429 8.022533772 158330288 pcc Carbon cycling Carbon fixation Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 9.490295168 9.906174932 9.447563459 9.168978896 9.937284488 10.01595208 10.17904698 9.904076149 9.640823482 9.632681181 9.938061953 9.973462556 218750822 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.649811199 8.653814503 9.167592226 9.223037265 9.006055431 8.744992968 8.780706707 9.199839461 9.079341159 8.878568267 8.569890539 8.648990735 160865666 Arylest Organic Remediation Aromatics Other aromatics "Salmonella enterica subsp. arizonae serovar 62:z4,z23:--" superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 10.77379818 10.18717473 10.46922097 10.64227503 10.29495388 10.07750074 10.63301737 10.36935907 10.4785336 10.41525763 10.4365913 10.34354807 282864699 sigma_24 Stress Sigma factors Streptomyces sp. ACTE superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.810133291 8.690994199 8.699978239 8.520611175 8.60451103 8.249802556 8.77231595 8.685647477 8.89255415 8.896526135 266631213 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 8.955089265 8.802310027 9.05670928 8.16193604 8.225724089 8.195117267 8.157389741 7.925316342 8.100198801 8.395277809 8.468713811 8.539646024 167040972 ChrA Metal Resistance Chromium Thermoanaerobacter sp. X514 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Thermoanaerobacter; 8.629631841 8.507468697 8.869658506 8.205204906 8.325408471 8.307286199 7.655596421 8.140070484 8.118328106 7.838119207 7.937189161 8.268523975 56475838 sigma_38 Stress Sigma factors Aromatoleum aromaticum EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 8.939342465 9.301909827 8.9673775 9.350317301 9.42621571 9.357315667 9.412899663 9.559965354 9.171122415 9.625676897 9.568139613 8.972589135 94550648 pilin virulence pilin Candidatus Koribacter versatilis Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 9.037576745 8.946485597 8.964248711 8.788107301 8.741176378 8.741725746 9.006835078 8.966367618 8.893176221 8.944581305 8.985657976 8.855532868 157368345 atzC Organic Remediation Herbicides related compound Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 9.100346092 9.007731598 8.949206297 8.351244403 8.593374284 8.931370161 9.514551833 9.12252281 9.479328349 8.826969 8.959407485 8.81132126 150270585 sigma_24 Stress Sigma factors Bacteroides capillosus ATCC 29799 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides capillosus; 8.618613614 8.461386738 8.014608207 7.964250967 7.649964039 7.494632931 7.598384083 8.185599131 7.953482924 7.565713612 7.89806865 118434453 pcaG Organic Remediation Aromatics Other aromatics Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 8.327237247 8.744614021 8.742855443 8.431376006 8.418583528 8.800886295 8.536895248 8.217272792 8.892353109 8.359980441 8.371290006 8.116190897 260621641 ara Carbon cycling Carbon degradation Hemicellulose Bacteroides finegoldii DSM 17565 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides finegoldii; 8.028799304 8.413842715 8.207903205 7.548027606 7.699578688 7.671881698 7.364357954 7.318396249 7.543041429 7.23998326 7.684312687 46199439 hly virulence hemolysin Thermus thermophilus HB27 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 8.975262175 9.037388675 9.036277363 8.443513422 8.372055919 8.373708896 8.114422643 8.212769504 8.302443123 8.323669075 8.278388504 8.549778187 5020380 hydrogenase Energy process Energy process Rhodobacter capsulatus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 9.416864594 9.621176004 9.471980728 9.530835353 9.519181488 9.431495421 9.285927242 9.778211928 9.411507556 9.773569146 10.01885388 9.501936835 121711647 tfdA Organic Remediation Aromatics Chlorinated aromatics Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 8.442328196 8.751527765 8.732539633 7.666610451 7.869057765 8.296361226 8.802359474 8.211440611 8.948548677 8.305451422 7.880636761 8.600662695 77462748 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacter sphaeroides 2.4.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 8.906052529 8.692690681 8.513258856 8.521358483 8.368453253 8.769461264 8.743277337 9.035689345 8.811877913 8.465032771 8.35764621 85824034 glnA Stress Nitrogen limitation Roseobacter sp. MED193 9.079200747 8.829948504 8.910534971 7.944728641 7.911483037 7.90310214 8.048181307 7.594871569 8.184024741 8.031788099 7.769013915 8.222075111 161524100 ChrA Metal Resistance Chromium Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 7.287173493 7.555320162 7.657912311 7.371215972 7.725119916 7.987739819 7.77049954 7.299730081 7.597638572 15898620 related_thiosulfate_gene Bioleaching Sulphur Sulfolobus solfataricus P2 8.248177673 8.493445804 8.669729471 7.561464222 7.461974719 7.633216107 6.886758838 7.680321982 7.51451178 7.385448161 7.514781365 32562911 bphD Organic Remediation Aromatics Polycyclic aromatics Bacillus sp. JF8 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 10.49415109 9.729457743 10.06040928 9.940237954 9.800981877 9.489785708 9.98163501 9.815001213 9.762674392 9.728054768 9.715190551 9.540599574 3192934 katE Stress Oxygen stress Lactobacillus sakei 8.314467743 8.31310059 8.225152256 7.546609436 7.479811085 7.466548251 7.716354616 7.341826117 7.883147586 7.364462174 7.51545881 7.779099334 28926875 glnA Stress Nitrogen limitation Neurospora crassa OR74A 8.312677235 8.535183567 8.434484089 8.911523483 9.030859171 8.795062924 8.909162972 9.222368832 8.721743824 9.124581577 8.866936672 8.330694995 220936402 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 8.816526881 8.726045217 8.451265481 8.74121194 8.616564691 7.885981317 8.264930377 7.996034232 8.435327938 111026935 bphD Organic Remediation Aromatics Polycyclic aromatics Rhodococcus jostii RHA1 9.231943352 9.339370893 9.434636574 9.002056575 9.208497705 8.660397955 8.981852535 9.173827447 8.775573972 9.045085336 9.058455477 9.069623125 163840139 dehH Organic Remediation Chlorinated solvents Renibacterium salmoninarum ATCC 33209 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Renibacterium;species:Renibacterium salmoninarum; 9.515829845 9.649363701 9.722779772 8.736511279 8.159960016 8.784071033 8.699382724 8.500093286 8.697407148 8.699250514 8.986905045 198259533 B_lactamase_C Antibiotic resistance Beta-lactamases Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 9.790144408 9.704554815 9.849402617 9.281256088 8.938372357 9.246243377 8.805686519 8.738766179 8.783280518 8.876376053 8.868494591 9.209962661 126737799 SMR_antibiotics Antibiotic resistance transporter Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.645896658 8.765419076 8.997408906 8.104789936 8.151521055 8.219984037 8.174646226 8.009834254 8.161235366 8.071350685 8.20460517 8.50620027 39995640 cytochrome Energy process Energy process Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 8.248249969 8.616539592 8.44998187 8.019463795 7.984827403 8.384677445 8.51414616 8.627199373 8.413764743 8.679270675 8.476710031 8.785931906 99080402 4HBH Organic Remediation Aromatics BTEX and related aromatics Silicibacter sp. TM1040 9.572297826 9.531352678 9.692266221 9.356900196 9.394776958 8.85652658 86574209 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.274342244 9.268967781 9.054316018 8.343253037 8.3772928 8.287605114 8.789766372 8.457741108 8.502647127 8.54990296 8.380813816 89361126 nmoA Organic Remediation Aromatics Nitoaromatics Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.520364418 8.724493304 8.528156973 8.164304554 8.273316663 8.444807078 8.269574552 8.457552722 8.630059131 8.000280037 8.40088599 7.98466551 88919941 rubisco Carbon cycling Carbon fixation Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 8.921959385 8.889517995 9.067120695 9.589275139 9.146429028 8.958194064 9.114797623 9.296432961 9.280770886 9.166559522 8.850564235 8.983223788 153892568 gyrB other category gyrB Opitutaceae bacterium TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 8.817299969 8.627485098 8.548622177 8.980897421 8.617457106 8.338275418 8.894617274 9.020684647 8.637252016 9.040297892 8.95717992 8.664049839 213968972 iro virulence Pseudomonas syringae pv. tomato T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 9.96185736 9.989731975 10.29929686 9.490801853 9.389211353 9.177987692 9.732531721 9.304742478 9.805665267 9.83172118 9.791493994 9.786623924 118735435 pcaG Organic Remediation Aromatics Other aromatics Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 8.607991938 8.829256371 8.675682144 8.389721653 8.425564001 8.483049323 7.894059372 7.943173554 8.464582048 8.28461615 8.396584648 8.243172739 94310300 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.289054083 8.294736037 8.347744938 7.6220091 7.719381375 7.791485259 7.66158912 8.17157395 8.086053895 8.137066155 8.185642839 7.93791376 170142908 AceB Carbon cycling Carbon degradation others Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 8.794789015 8.736887647 8.57534612 8.089136871 8.280461698 8.092619905 8.685659844 7.686826096 8.684192454 8.017527798 8.165260934 8.019963509 223894271 sigma_70 Stress Sigma factors bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 10.01734343 10.28444275 10.26299011 8.951129597 9.308088552 9.988783365 119535391 clpC Stress Protein stress Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 10.71267304 10.11652666 9.731757879 10.36402712 10.07553774 9.611962288 10.41695173 10.10038281 10.61290835 10.15517337 10.05022563 9.668886451 163855546 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 8.292025327 8.21869124 8.151374158 7.349132294 7.297593707 7.755736949 7.576422127 7.145707595 7.896111179 7.428859214 7.335175254 7.662650413 27350645 vanA Carbon cycling Carbon degradation Others Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.877255784 8.936024558 8.787603598 8.833232398 8.577702368 8.727649364 8.869942386 8.973990464 9.095470438 8.953325402 8.923529041 8.988612327 256781691 B_lactamase_C Antibiotic resistance Beta-lactamases Streptomyces hygroscopicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces hygroscopicus; 8.686817952 9.141946611 8.351753446 8.527920096 8.64605061 8.859663728 9.085117582 8.933544293 8.728008635 8.813535863 8.886052168 9.050272502 83651670 czcC Metal Resistance "Cadmium,Cobalt,Zinc" Burkholderia thailandensis E264 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 10.08464207 10.2874779 10.17019805 10.11239377 10.32710522 10.06574457 9.99052035 10.31988525 10.05751654 10.29404762 10.11108509 10.21581165 85716147 ahpC Stress Oxygen stress Nitrobacter sp. Nb-311A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter; 8.937788274 8.174622538 8.245102154 9.192155393 8.954318055 8.675773254 9.212021669 9.128577117 8.815119001 8.917146151 8.88776651 8.850712171 121584279 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 8.15710041 8.227601754 7.757179321 7.588499371 7.620938185 7.454357661 7.834377325 7.917951025 7.640480035 7.359470291 7.686634157 255259180 phoB Stress Phosphate limitation Sideroxydans lithotrophicus ES-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Sideroxydans;species:Sideroxydans lithotrophicus; 8.64409703 8.772164753 8.184620021 8.429954335 8.642093971 8.882965009 8.595995855 8.388067352 8.543626844 8.329694934 151279883 grpE Stress Heat shock Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 8.603279789 8.382201955 8.293124743 7.838302093 7.579424216 8.262012909 8.032267391 7.840606661 7.936203003 7.923098797 162568559 aoxB Metal Resistance Arsenic uncultured bacterium superkingdom:Bacteria; 8.275462584 8.345780901 7.757500676 7.996371883 8.131772607 7.948896905 8.073793148 8.183912743 8.102791769 8.097479773 7.834804635 169761700 pilin virulence pilin Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.37348628 8.436631098 8.484733225 8.006930552 8.092314193 7.983442911 8.002698921 8.143489122 8.24460321 8.020083232 7.785763829 7.929102506 186471136 pmdAB Organic Remediation Aromatics Others Burkholderia phymatum STM815 8.302365452 8.794460316 8.654898838 8.61425698 8.048761857 8.395407412 8.81991284 8.400712106 8.539041548 8.213119575 8.522408797 209401868 narG Nitrogen Denitrification uncultured bacterium 7.955162405 7.833326642 7.905462765 7.85619542 7.719644937 7.666696433 7.815847792 7.769854778 63253985 ALN Organic Remediation Others Pseudomonas syringae pv. syringae B728a 8.81973582 9.011654087 8.705704414 8.336081893 8.47801143 8.063208889 8.030928062 7.986616161 8.413065171 8.607443152 110825410 CDH Carbon cycling Carbon degradation Cellulose Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 9.417500198 9.55434567 9.548804466 8.947538705 9.098227555 8.981443313 9.180863164 9.474670727 8.949288225 9.296635892 9.093803321 9.287011137 42741699 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Alcaligenes faecalis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes; 8.399702862 8.422585337 7.806604054 8.125229146 8.233116358 8.514803566 7.618002958 8.646105517 7.650688763 7.909157367 7.714975802 218758843 ChrA Metal Resistance Chromium Desulfovibrio vulgaris str. 'Miyazaki F' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 8.569245896 8.540841459 8.664396435 8.308127997 8.293524701 8.075101386 8.175980932 8.31835951 8.350527641 8.336309285 8.095161167 8.334326784 229469654 amyA Carbon cycling Carbon degradation Starch Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 9.960023505 10.03074886 9.370618627 9.45462825 9.557478935 9.48317145 9.034670762 8.982789176 8.994168215 9.349921583 9.199636681 9.341849067 256765964 katE Stress Oxygen stress Streptomyces sp. C 8.11106821 8.546349379 8.824306791 8.789219357 8.702930594 8.590663384 8.599105887 9.00604282 8.486452751 8.723848776 8.570994019 8.186332235 83645136 AceA Carbon cycling Carbon degradation others Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 9.014541974 9.13132014 8.92021849 8.368471194 8.188171109 8.072387931 9.034586794 8.600355969 8.850519219 8.518647547 8.367921574 8.221924851 157411478 napA Nitrogen Dissimilatory N reduction uncultured prokaryote 8.610922173 8.454705895 8.675893341 7.70952945 8.18887285 7.459150498 7.563587407 7.601767397 8.026966483 7.913053576 7.882019489 8.185992028 83746982 mdlD Organic Remediation Aromatics Other aromatics Ralstonia solanacearum UW551 8.703051448 8.579930296 8.774583316 8.344484843 8.162811862 8.228311686 8.439431763 8.186147012 8.818289961 8.068200969 8.112337685 8.009395501 154275098 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Ajellomyces capsulatus NAm1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 8.468033458 8.231351214 8.426910551 8.192452652 7.76970639 7.822026026 7.980635968 8.089399609 7.946954822 7.693770168 8.120718541 150376948 fnr Stress Oxygen stress Sinorhizobium medicae WSM419 8.407645372 8.511784952 8.747885295 8.380706523 8.019464112 8.043163785 7.912632266 7.928519269 8.219017856 8.293399536 8.17409982 8.110579351 126348553 iro virulence Streptomyces ambofaciens ATCC 23877 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ambofaciens; 9.292622546 8.957282245 9.308186958 8.847019989 8.733356091 8.636273501 8.55383488 8.831805064 8.565973046 8.64458064 8.758099083 9.0070119 83768949 tfdA Organic Remediation Aromatics Chlorinated aromatics Aspergillus oryzae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 8.149978758 8.107554071 8.39019248 8.177712833 8.023337368 8.001401872 7.792079772 8.22378332 8.296256822 8.298174839 8.178118506 8.118482484 37925029 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.276166184 8.38591469 8.460374012 7.917980846 7.81115104 7.645160942 7.299580941 7.825448523 7.894716396 7.727809155 7.530096918 7.932251422 254515065 hly virulence hemolysin gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.276497688 8.51958705 8.457593497 7.672484804 7.765575422 7.769845744 7.352654551 7.913626374 7.878546203 7.595885058 7.548949064 7.739508016 78355627 cytochrome Energy process Energy process Desulfovibrio desulfuricans G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 9.561110793 9.465805046 9.625439781 9.89339703 10.01236093 9.809618512 9.637057367 10.17068443 9.582684805 9.869990189 9.525672164 9.980818055 77382984 silC Metal Resistance Silver Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 9.325596227 9.599637446 9.511772648 8.875736992 8.773861148 8.769726951 9.045040566 9.121011867 8.653785004 9.03422646 9.226505213 9.014267489 197625355 sigma_70 Stress Sigma factors Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 8.765422653 8.918995314 8.713889837 8.313530975 8.367134003 8.558307248 8.750088418 8.467641322 9.040136708 8.206834031 8.112547826 8.314204911 227987144 glnA Stress Nitrogen limitation Meiothermus silvanus DSM 9946 8.957674528 8.907299304 9.086704778 8.426196322 7.477300828 8.158407259 8.041469735 7.637749919 8.002977071 7.981500747 7.930537647 8.320666071 268312745 amyA Carbon cycling Carbon degradation Starch Thermomonospora curvata DSM 43183 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora;species:Thermomonospora curvata; 9.200183653 9.456250475 9.398129727 9.130649934 9.183005034 9.229242765 9.443644221 9.199954415 8.952940546 8.98718443 9.095598207 9.156971917 157371005 SMR_antibiotics Antibiotic resistance transporter Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 8.522290834 8.173908505 8.420797439 7.775324232 8.15217352 8.360591553 8.665865304 7.333267818 8.01672628 7.978779546 8.174810374 77457139 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 9.503067418 9.647443146 9.594279809 9.314900608 9.228243979 9.169384627 9.507939973 9.435625588 9.4632997 9.493266406 9.288280532 9.128228855 148663461 clpC Stress Protein stress Mycobacterium tuberculosis H37Ra superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 9.352262779 9.519177418 9.489077943 8.740659015 8.519331602 8.539069089 8.722813314 8.526394858 8.427739099 8.457544537 8.415657481 8.789015498 211585922 nagG Organic Remediation Aromatics Aromatic carboxylic acid Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 9.427268946 9.928654353 9.590933565 8.81110956 8.857187299 9.226454733 9.802728318 9.506867366 9.316156157 9.426115226 9.439743555 9.728173822 146188553 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.689140889 8.896968037 8.825428737 8.357125066 8.246459864 8.194934057 8.167989345 8.384809288 8.177795988 8.425519034 8.122057849 8.290811636 39578119 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.540250967 8.530454094 8.537480417 8.560163222 8.320202704 8.040017892 8.372859296 8.452822846 8.631946989 8.337276792 8.257990635 8.528609092 149361062 merP Metal Resistance Mercury Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 8.499592353 8.486920729 8.390894719 8.846770309 8.531695002 8.204144333 8.705222826 8.749217653 8.500069291 8.445337085 8.118314427 8.175806743 152972624 MFS_antibiotic Antibiotic resistance transporter Klebsiella pneumoniae subsp. pneumoniae MGH 78578 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 8.758691882 8.923708562 8.855843225 8.437378105 8.133564052 8.10822317 8.212937631 8.120009556 8.369456134 8.494425144 8.021956785 8.586160655 163259796 sigma_24 Stress Sigma factors Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 8.413845676 8.158291737 8.127699792 8.237042295 8.311984248 8.49066905 8.285863537 8.492469112 8.2853826 8.348120284 8.412003588 225043436 grpE Stress Heat shock Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 8.744904299 8.699408616 9.031474735 8.364503417 8.217742671 8.151696117 8.053932898 8.016663787 8.220357493 8.000168145 7.713429251 8.314053371 145206692 phoA Stress Phosphate limitation Chlorobium phaeovibrioides DSM 265 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeovibrioides; 9.231419723 9.005822587 9.613500053 8.585579804 8.524435678 8.498402826 239980627 AceB Carbon cycling Carbon degradation others Streptomyces albus J1074 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces albus; 8.815356375 8.910546235 8.797369424 9.078302228 8.842825619 8.443327831 8.99920505 8.968737316 8.955688383 8.669191683 8.417291653 8.451969299 241204069 pstA Stress Phosphate limitation Rhizobium leguminosarum bv. trifolii WSM1325 8.990088612 9.110334844 8.689699265 8.245072976 8.518175716 8.34387706 8.41681875 8.434701202 8.242747611 8.341701429 8.017983716 269132573 iro virulence Klebsiella variicola At-22 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella variicola; 9.052124316 8.953293027 9.24500478 8.322930787 8.485833465 8.411590899 8.065161778 8.089486231 8.230656103 8.355924163 8.510430137 8.534096417 145593704 TerC Metal Resistance Tellurium Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 8.131862503 8.096470829 8.128737047 7.316510884 7.681661633 7.850130197 7.906567126 7.633159187 7.748719479 7.625356135 7.466523193 270352328 sigma_24 Stress Sigma factors Burkholderia sp. CCGE1002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.9894843 7.779282959 7.926161259 8.20846559 7.968613301 7.896901903 8.033358499 144898429 gyrB other category gyrB Magnetospirillum gryphiswaldense MSR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 9.2992037 9.167510759 9.032386841 8.411454356 8.675147711 8.596565646 8.131427929 9.346786852 8.277096443 8.334019445 94984197 CopA Metal Resistance Copper Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 8.386995291 8.874255511 8.911580945 8.906459932 9.004875078 9.082018484 8.658889129 9.21017958 8.534875147 9.255122226 9.141264451 9.0637924 15967056 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 8.189066517 8.152022871 8.121484542 8.016808907 8.130298376 7.640394997 7.639808736 8.080184657 8.107714791 8.011405923 8.038556548 7.912031963 121554547 phn Organic Remediation Herbicides related compound Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 8.656592419 8.60035042 8.297935084 7.964113747 8.265960248 8.305487881 8.569359813 8.151986655 8.810440258 8.249761914 8.548193626 8.21637444 209959715 fnr Stress Oxygen stress Rhodospirillum centenum SW 8.035125174 7.732713934 7.723635824 7.597239465 7.671547003 7.687878332 7.684745768 7.972312135 151580204 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Opitutaceae bacterium TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 10.51064137 10.63956039 10.49997128 10.23388064 10.33987931 10.72795246 10.85701726 10.4734346 10.83983417 10.69952685 10.58643597 10.88403716 167365665 pcc Carbon cycling Carbon fixation Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.021132021 8.714958485 8.50664745 9.138583488 8.901417595 8.768117071 9.071096505 8.951938314 8.878815465 8.605585959 8.868853164 8.379493974 251835250 pstB Stress Phosphate limitation Fusobacterium varium ATCC 27725 8.232032405 8.036405391 8.327058706 7.422774064 7.397976677 7.402502093 7.19083745 7.00403465 7.761933497 7.241996057 7.315883777 7.353173545 146305070 type_III_secretion virulence secretion Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 7.655538891 7.539145373 7.492688894 7.133980304 7.57228478 7.852454081 7.793644585 7.369070305 7.764503435 227422045 type_III_secretion virulence secretion Denitrovibrio acetiphilus DSM 12809 superkingdom:Bacteria;phylum:Deferribacteres;class:Deferribacteres;order:Deferribacterales;family:Deferribacteraceae;genus:Denitrovibrio;species:Denitrovibrio acetiphilus; 8.131595516 8.31830744 8.419815875 7.569557418 7.565267719 7.81410637 7.747043169 7.451116445 7.994122521 7.604947385 7.491611347 7.770635309 226306073 SMR_antibiotics Antibiotic resistance transporter Rhodococcus erythropolis PR4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 8.96252676 8.906319942 8.824197547 8.622217648 8.476515543 8.274010843 8.317156089 8.597481628 8.655348516 8.636737489 8.805601824 8.925079106 118592586 tftH Organic Remediation Aromatics Chlorinated aromatics Stappia aggregata IAM 12614 8.906667795 8.423995517 8.284710424 8.575245911 8.35198674 8.21006418 8.481029354 8.439202502 8.456066702 8.659540333 8.43745084 8.414292843 146283430 MFS_antibiotic Antibiotic resistance transporter Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 11.44410833 11.31112898 11.28160849 11.15195705 11.17582186 11.20067885 10.95376645 10.60113848 11.20154674 11.0161407 11.16387211 11.54257279 197086643 TehB Metal Resistance Tellurium Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 8.642468362 8.553529157 8.618442228 7.992884812 7.881257168 7.706462082 7.496261131 7.392497986 8.21609275 7.378426487 7.430913563 7.932833564 33333865 nidA Organic Remediation Aromatics Polycyclic aromatics Mycobacterium sp. S65 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 9.280978198 9.323699704 9.408881049 8.615898163 8.536326572 8.632279076 8.662370799 8.529292546 8.572981812 8.675939916 8.667370101 8.935903331 167358754 nhh Organic Remediation Aromatics Nitoaromatics Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.084990546 7.992920542 7.710394135 7.840131262 7.420803717 7.30058747 7.082780094 7.736301046 7.127546659 7.545779692 7.502786501 154245081 Catechol Organic Remediation Aromatics Other aromatics Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.859803197 9.026981036 8.954398363 8.154028898 8.511591105 8.946255212 9.150381934 8.536865001 9.195931688 8.733010223 8.912747107 8.651463483 108801270 pcc Carbon cycling Carbon fixation Mycobacterium sp. MCS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.717650326 8.581762528 8.61665889 8.162730268 8.216399995 8.484977947 8.819700889 8.344950671 8.943970973 8.526263537 8.575385303 8.499000049 55737022 pstB Stress Phosphate limitation Streptococcus thermophilus LMG 18311 8.574657654 8.343597098 8.536671732 7.891778905 8.052958142 7.85282484 7.658290334 7.458567299 8.069997572 7.888704365 8.028482299 29605672 katE Stress Oxygen stress Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 9.035698081 8.808650653 8.771491904 8.604127741 8.639314959 8.605685326 8.872935925 8.746754186 8.777220917 9.135082181 9.008517723 8.906913926 169005548 atzC Organic Remediation Herbicides related compound Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 8.354139023 7.997339221 8.010534548 7.51726262 7.517677004 7.8431252 7.774155902 7.222188967 7.625526877 7.477358081 7.537706573 15899608 heavy_metal Bioleaching Metal Resistance Sulfolobus solfataricus P2 8.308571115 8.160101195 7.497370949 7.396492376 7.362242439 7.282344409 7.057603472 7.767843462 7.342369957 7.322483105 7.40856429 34332835 narG Nitrogen Denitrification Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 9.246656481 9.391196066 9.228822321 9.029202727 8.896628473 9.000595021 9.096219496 9.255409319 9.203442403 9.54049208 9.375018366 9.288052169 187478460 Arylest Organic Remediation Aromatics Other aromatics Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 8.261102641 7.980991047 8.523671549 8.055645731 8.588630059 7.947418047 8.528720058 8.095818153 8.451816899 8.686169863 8.249141989 255335976 sox Sulphur Sulphur oxidation Hyphomicrobium denitrificans ATCC 51888 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 8.500010114 8.592892782 8.589458488 8.301430824 8.734935044 8.313027221 8.062313708 8.281736997 8.288601914 8.395840237 8.343031939 8.466615306 212171420 alkB Organic Remediation Other Hydrocarbons Alcanivorax dieselolei superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 8.435180432 8.666726643 8.394724934 8.435151123 8.756845158 8.390454597 8.018363394 8.327982711 8.098046424 8.397316148 8.443179878 8.32388151 154501061 bco Organic Remediation Aromatics Aromatic carboxylic acid Bacteroides capillosus ATCC 29799 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides capillosus; 9.223744551 9.18323651 9.102275156 8.673123126 8.679240671 8.877251671 8.846952537 8.85526208 8.685334426 9.023864478 9.116187775 9.178835889 183226115 ppx Phosphorus Phosphorus utilization Lactobacillus fermentum IFO 3956 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus fermentum; 8.79056301 8.35117981 8.945439639 8.44274576 8.350658372 8.354928776 8.038034298 8.267055949 8.105809326 8.167028901 8.302678854 8.401438201 256831609 ara Carbon cycling Carbon degradation Hemicellulose Jonesia denitrificans DSM 20603 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 8.588244125 8.53503095 8.592875369 8.372752227 8.23799243 8.25278964 8.299246321 8.270332942 8.35262624 8.094184226 8.062084633 8.064044726 71849048 Xamo Organic Remediation Other Hydrocarbons Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 10.05084956 10.04744209 9.883853613 10.37973974 10.34800392 9.938917893 10.5542797 10.39930032 10.05416842 10.37453164 10.43456597 9.910668821 194350165 pilin virulence pilin Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 8.468912168 8.450886678 8.442294104 8.627132622 8.380307369 8.32987111 8.453299211 8.607739533 8.742427633 8.563958731 8.211785569 8.45390927 50086617 MFS_antibiotic Antibiotic resistance transporter Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 6.922854276 7.330255758 116186099 merP Metal Resistance Mercury Vibrio sp. Ex25 8.73159319 8.590810961 8.601594343 8.562783429 8.734597335 8.843828122 8.823690264 9.028683816 8.498257073 9.308781937 9.017243342 9.144120717 269786459 gyrB other category gyrB Sphaerobacter thermophilus DSM 20745 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 7.844181506 7.65972733 7.541285114 7.686086566 7.784045329 7.893493176 8.039878292 8.069040979 8.051596862 189186869 mauAB Organic Remediation Herbicides related compound Methylacidiphilum infernorum V4 superkingdom:Bacteria;phylum:Verrucomicrobia;order:Methylacidiphilales;family:Methylacidiphilaceae;genus:Methylacidiphilum;species:Methylacidiphilum infernorum; 8.115148542 8.039645656 7.439089771 7.471414851 7.940720301 7.459769656 7.69623999 8.012582223 7.842601525 7.741762386 7.806442904 156056144 Catechol Organic Remediation Aromatics Other aromatics Sclerotinia sclerotiorum 1980 8.95707462 8.50639698 9.120268773 8.606957108 8.315822251 8.276236507 7.804822497 7.734427505 8.249179768 88864660 linB Organic Remediation Pesticides related compound Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 10.05071668 9.859806724 9.311849401 10.03700656 9.73671285 10.00159472 10.26863676 9.983977056 9.746034775 9.24797981 9.44208138 9.559558699 86159489 cytochrome Energy process Energy process Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 8.64541058 8.774956865 8.453021155 8.720685924 8.430966045 8.142977071 8.444096374 8.467885451 8.201619883 8.518940166 8.324697754 8.476565712 189500418 mer Metal Resistance Mercury Chlorobium phaeobacteroides BS1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 8.219872237 7.931784759 8.170877746 7.776672035 7.647421274 7.508688167 7.669263909 7.547271049 7.743257669 7.827190022 254439620 xylA Carbon cycling Carbon degradation Hemicellulose Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 8.595600435 8.295360407 8.412569737 8.104310858 8.135333497 7.909513502 7.920145065 7.864574974 8.185413824 7.933739509 7.727431485 7.850756885 34494854 ureC Nitrogen Ammonification Haloarcula argentinensis superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula; 8.856982626 8.90767659 8.95726593 8.42843646 8.716100065 8.810122188 8.440230559 8.74232088 8.911016478 114331808 pilin virulence pilin Nitrosomonas eutropha C91 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas eutropha; 9.27664657 9.100874009 9.198542299 8.587345204 8.686044297 8.753135324 8.594915256 8.813392025 8.628991875 8.642242977 8.820220784 8.916942174 170746771 fnr Stress Oxygen stress Methylobacterium radiotolerans JCM 2831 8.709853448 8.125437618 8.795940888 8.164778002 8.105445986 7.869529399 8.009556375 7.998180745 7.725234703 7.777018177 8.100990963 114740076 pstA Stress Phosphate limitation Hyphomonas neptunium ATCC 15444 9.364072151 9.671394611 9.771037712 9.651971036 9.72538144 9.713038255 9.709330506 10.08889965 9.743505546 10.03616294 9.900724771 9.99067141 84390971 SMR_antibiotics Antibiotic resistance transporter Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 8.477402423 8.424670168 8.380847995 8.074029674 7.977907867 8.418311089 8.551221468 8.027747146 8.442718589 8.002885827 8.253803317 7.899876687 145250423 AceB Carbon cycling Carbon degradation others Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8.328768396 8.565581612 8.408241781 8.265451967 8.39510994 8.252627005 8.267242028 8.338691545 8.339968031 8.292072295 8.231400939 8.103353058 113729901 xylanase Carbon cycling Carbon degradation Hemicellulose Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.86908139 8.793543454 8.833998796 8.474501561 8.454885562 8.2947901 7.980613319 8.097200246 8.352877155 8.160006905 8.286535139 8.519055387 77978460 ureC Nitrogen Ammonification Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 9.462779506 9.387447719 9.746266237 8.825548635 8.580119579 8.444169119 8.37796047 8.610537557 8.708150535 8.88237527 8.937684094 218229896 cda Carbon cycling Carbon degradation Starch Roseburia intestinalis L1-82 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia intestinalis; 9.581589708 9.384691776 9.332751552 8.820184204 8.958398206 8.935750152 9.439307075 9.304048516 170659059 ureC Nitrogen Ammonification Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 9.241664541 9.017853219 9.17002581 8.987693233 8.952618925 8.801356241 8.703062467 8.728759493 8.639843774 8.738040326 8.779610093 8.870758584 87123483 fnr Stress Oxygen stress Synechococcus sp. RS9917 8.110012939 8.461100914 8.103102239 8.09662839 7.938808857 7.993906167 8.07141836 8.557000179 8.414861723 8.151761371 8.305123872 34105223 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 8.966272738 9.035624035 8.897017175 8.890309302 9.041639138 8.980749659 9.343825124 9.053708546 8.960658844 9.125189782 9.451487691 9.295536776 187483075 SMR_antibiotics Antibiotic resistance transporter Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 8.048307603 8.360070191 7.238386969 7.222090893 229758967 nplT Carbon cycling Carbon degradation Starch Streptosporangium roseum DSM 43021 8.814391937 8.905188395 8.404553971 8.552906118 8.422033115 9.116382775 8.53676586 8.578786024 29832895 TerD Metal Resistance Tellurium Streptomyces avermitilis MA-4680 11.50489612 11.34895216 11.62698501 11.23539242 11.15075053 11.03280542 10.93023386 10.50682932 11.3130219 11.12310237 11.14657128 11.29545614 227393011 AceB Carbon cycling Carbon degradation others Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Haliangiaceae;genus:Haliangium;species:Haliangium ochraceum; 8.82642287 9.061541067 9.313803935 8.679246385 8.618514392 8.465963246 8.539705265 9.051155641 8.467221938 8.588591895 8.574633399 8.603545386 187736115 sigma_70 Stress Sigma factors Akkermansia muciniphila ATCC BAA-835 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Akkermansia;species:Akkermansia muciniphila; 7.965115088 8.256112573 8.17231131 7.602219821 7.47425427 7.399049745 7.351444197 7.740390529 7.979046726 7.47543947 7.640402106 111067630 nagG Organic Remediation Aromatics Aromatic carboxylic acid Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 7.485725358 7.451195891 7.373520573 7.276721698 7.707569576 7.945977675 7.554083199 7.374408283 7.789052446 169241779 inv virulence invasion Mycobacterium abscessus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 9.95882521 9.803656375 9.987741352 9.099086292 9.112413086 9.563140541 9.373969203 8.668836137 9.459495112 9.173357655 9.425373649 9.454924578 145304073 glnA Stress Nitrogen limitation Salinispora tropica CNB-440 8.26185712 8.466162073 8.518304569 8.5054663 8.213072966 8.244120524 8.803961695 8.468279397 8.365905254 8.268923534 8.514720223 255994333 grpE Stress Heat shock Eubacterium saphenum ATCC 49989 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium saphenum; 8.904140099 8.591118507 8.521279438 8.159013223 7.859801821 7.882383087 7.560963897 7.571724225 7.904960243 7.780525035 7.92285024 8.02214657 84664413 POBMO Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2654 9.871521654 9.830469773 9.90054474 9.05126604 9.096816443 9.197897858 9.464804708 9.125885134 9.399223028 9.067854525 9.15692855 9.352520781 145617404 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 9.010114728 9.24176592 9.157633033 8.500857455 8.345283768 8.501873426 8.386746688 8.108958193 8.542652212 8.148548916 8.244309208 8.388695007 146277258 exaA Organic Remediation Chlorinated solvents Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 9.603281939 9.609134696 9.689585332 9.612609872 9.529072076 9.190982902 9.54546442 9.952405368 9.623189468 9.795067887 9.490635138 9.895640509 213952711 cda Carbon cycling Carbon degradation Starch Corynebacterium amycolatum SK46 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium amycolatum; 9.079916142 8.696611661 8.669775503 8.373659021 8.401052375 8.400751302 8.690024919 7.943590305 8.863408345 8.299058418 8.188416699 8.446525024 26278836 narG Nitrogen Denitrification uncultured bacterium 8.053831941 8.148898017 8.894118394 8.502731985 8.300446804 7.805018567 8.199045883 8.819355944 7.93211738 8.572116367 8.392408435 8.585452878 161525784 cap virulence capsule Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 9.623519058 9.487682881 9.727610907 9.002120126 8.776457463 8.683645649 8.752575069 8.794468493 8.709988463 8.924822311 8.938432537 9.134636443 210159748 cellobiase Carbon cycling Carbon degradation Cellulose Collinsella stercoris DSM 13279 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella stercoris; 8.160444945 8.834080528 9.045697279 8.22489368 7.961556197 8.081091018 7.645358043 8.293754144 8.237374104 8.083785484 88186476 endochitinase Carbon cycling Carbon degradation Chitin Sanguibacter antarcticus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Sanguibacteraceae;genus:Sanguibacter; 8.873099524 8.966938486 8.620229867 8.7151518 8.265306013 8.703799134 9.172247961 8.517776886 8.582106908 8.158036386 8.378616894 8.373863577 29125958 nosZ Nitrogen Denitrification uncultured soil bacterium superkingdom:Bacteria; 8.340222743 8.688048298 8.685873689 8.649874027 8.666506338 8.853044087 9.15931981 8.424190603 9.062371752 8.738336438 8.752344425 8.85915698 86608149 sigma_70 Stress Sigma factors Synechococcus sp. JA-2-3B'a(2-13) superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.879495115 8.658301414 8.870261416 8.535020268 8.421795163 8.353410803 8.005985228 8.681989631 8.392779654 8.579258881 8.447953774 8.626500042 39837120 Catechol Organic Remediation Aromatics Other aromatics Pseudomonas stutzeri superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.944691084 8.523106133 8.426784138 7.814518715 7.976342344 8.038924419 8.593950576 7.990029496 8.427017566 7.626874443 7.839498564 8.026317478 89056241 pimF Organic Remediation Aromatics Aromatic carboxylic acid Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 8.315318349 8.271874415 8.149862687 8.028283998 8.557824542 8.479499165 8.091146728 8.629626545 7.935331182 8.282786645 8.238948614 32351158 CODH Carbon cycling Carbon fixation Aminobacter sp. COX superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Aminobacter; 8.234077949 7.972045736 7.976952262 8.260685108 8.056564305 7.900268086 8.101064665 8.215273587 8.158974927 7.699880205 7.94475176 7.795044476 146740636 rubisco Carbon cycling Carbon fixation Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 8.735700984 8.827707269 8.477085778 8.749373207 8.733326217 8.76150982 8.748828438 9.111439358 8.65909849 8.915659494 9.056407687 8.34602479 145221205 CadA Metal Resistance Cadmium Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.441114903 8.643556948 8.751500824 8.64423274 8.671165328 8.44707152 8.524851686 8.865687374 8.714817628 8.686216109 8.375624385 8.42998946 126731211 oxyR Stress Oxygen stress Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 8.681412459 8.781410485 8.592094963 8.597576686 8.613349865 8.569221068 8.650160789 9.065550339 8.917425222 9.205498117 9.131762735 9.010707199 260863759 Mex Antibiotic resistance transporter Selenomonas sputigena ATCC 35185 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sputigena; 8.249354887 8.413585901 7.920126727 8.234489181 7.846939385 7.873946672 8.447792069 8.482540619 8.264919314 8.36764108 5441780 cumC Organic Remediation Aromatics Other aromatics Streptomyces coelicolor A3(2) 8.152744869 8.83469634 8.060326182 8.309145479 8.484353984 8.462845407 8.095472305 8.597701739 8.632540084 8.400150788 99083447 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.304643997 7.186662306 6.867464528 6.693085236 7.346236859 7.09818037 7.106320595 7.488966998 63147344 phenol_oxidase Carbon cycling Carbon degradation Lignin Trametes versicolor superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 9.131513588 9.47322196 9.236803697 8.93358907 9.287781468 9.625560355 8.150572113 9.503111392 8.976087238 8.354623879 8.803767553 118175219 katA Stress Oxygen stress Mycobacterium smegmatis str. MC2 155 8.747638818 8.77981137 9.02781795 8.531814736 8.689924878 8.562534222 8.674921097 8.651209505 8.377387012 8.549254287 8.55180501 8.395042012 154292281 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 9.184050115 9.284442623 9.453438487 8.809773254 8.605983235 8.618644817 8.519579024 8.46532246 8.430785226 8.37871123 8.402449623 8.68841897 110548284 CopA Metal Resistance Copper Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 9.624915299 9.557556957 9.732668399 9.055265942 9.028462764 8.982046392 8.738543407 8.766207295 8.903544298 8.621152032 8.907837099 9.063384198 27355481 atzA Organic Remediation Herbicides related compound Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.775980313 8.792333164 8.910612902 8.87251837 8.868869553 8.701139711 8.578059828 8.978070819 8.477864633 8.756610672 8.741620611 8.83084852 118748948 nagK Organic Remediation Aromatics Aromatic carboxylic acid Marinomonas sp. MWYL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 8.470055022 8.561782754 8.414975729 7.625187594 7.675798231 8.297260632 8.265484985 8.029727424 8.34335421 8.12864617 8.058088246 8.284114084 182413376 sigma_24 Stress Sigma factors Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 9.882348789 9.501680198 9.562633905 9.568190912 9.461726824 9.327096966 9.601573497 9.334592187 9.308779244 9.22199669 9.614333854 9.088864478 256794907 oxyR Stress Oxygen stress Kangiella koreensis DSM 16069 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Kangiella;species:Kangiella koreensis; 8.342745189 8.278338488 8.374379178 8.101963169 8.023490749 7.780958552 7.693475475 8.002462571 7.99705429 8.055413322 8.152109916 166861916 CMCI Organic Remediation Aromatics Other aromatics Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.327008088 8.396597477 8.717265536 8.712775968 8.585982221 8.255392629 8.788026571 8.980712473 8.780325508 8.898997695 8.480620818 8.572704394 239526477 glnA Stress Nitrogen limitation Lactobacillus paracasei subsp. paracasei 8700:2 9.7281038 9.714431366 9.731645224 9.009940848 8.76965929 9.177656214 8.737700605 8.594132933 8.768037963 8.864051242 8.841281525 9.135408563 116619185 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 8.451779806 8.433421941 8.526915965 7.637417167 7.629723254 7.849841088 8.130413768 7.707228694 8.243786458 8.110839452 7.952468986 7.999777432 167647600 ChrA Metal Resistance Chromium Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.325545919 8.146301979 8.495918929 8.339376675 8.106317053 7.916093196 7.935161858 8.462906222 8.421169421 8.228264318 8.204754212 8.408918282 207087659 obgE Stress Radiation stress beta proteobacterium KB13 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 9.696699786 9.17441925 9.116637883 9.079360023 8.99840412 8.758613619 9.1728735 9.131522499 9.113707379 8.957284617 8.80303351 8.933134984 254819956 CDH Carbon cycling Carbon degradation Cellulose Mycobacterium intracellulare ATCC 13950 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 8.553624783 8.169929126 8.662712732 8.149828234 7.715888496 8.411656352 8.529689432 8.484405818 8.073636835 8.050810265 8.171271311 108804581 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 8.686558031 8.999677491 8.854266248 8.221152796 8.240060985 8.136089397 7.635914145 8.301200682 8.128895645 8.233835258 8.407990292 91710123 nmoA Organic Remediation Aromatics Nitoaromatics Methylobacillus flagellatus KT superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 8.396830544 8.43337785 8.279900576 8.550309213 8.824221045 8.520294933 8.059054907 8.964506178 8.588521187 8.515399136 8.179928518 8.664808652 86568613 TerZ Metal Resistance Tellurium Frankia sp. CcI3 8.981936744 8.88370886 9.100780527 8.783646596 8.760064401 8.430349467 4514411 gyrB other category gyrB Acinetobacter sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 9.503862501 9.382963486 9.829435585 8.968502546 8.534501029 8.717334904 8.631264345 8.37987342 8.648715363 8.747688107 9.059189603 2588985 phdI Organic Remediation Aromatics Polycyclic aromatics Nocardioides sp. superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.740385847 8.645826036 8.78073125 8.166715403 8.100002121 8.008554373 8.61919307 8.165075957 8.144579179 8.317729743 8.057078926 157321291 ZitB Metal Resistance Zinc Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 8.762486224 8.834607809 8.975631652 8.131303256 8.107957798 8.088002625 8.46652489 8.011347342 8.521063829 7.910276798 7.849149987 8.008779355 221725708 akbF Organic Remediation Aromatics BTEX and related aromatics Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.035346482 7.744829439 8.141522261 7.898183422 7.883389397 8.303406511 7.583359644 8.014498314 7.776496922 196187172 CadA Metal Resistance Cadmium Brevundimonas sp. BAL3 9.167384169 8.598551961 9.274165863 8.674071144 8.451936675 8.493246823 8.29394413 8.616398477 8.528439524 8.843255323 158435894 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 9.528727236 9.517088966 9.567043724 8.772833457 8.744848698 8.842353957 8.689890439 8.582547907 8.629021857 8.754857385 8.769131259 9.009712725 121701251 pheA Organic Remediation Aromatics Other aromatics Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 8.705184131 8.281450227 8.189942195 8.560131939 8.555921609 8.745415932 8.592652705 8.731641101 8.165494573 14209512 pcpE Organic Remediation Herbicides related compound Burkholderia sp. NK8 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.824340135 8.671358796 8.407666677 8.026677249 8.383106707 8.53301019 8.776445587 8.256211514 8.779547342 8.216379212 8.056431589 8.283145475 147847028 sigma_70 Stress Sigma factors Synechococcus sp. WH 7803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 9.068207736 9.02876098 8.792037922 8.371778274 8.103595718 9.137998444 9.479358648 9.026378445 8.890210591 8.737466953 8.958321523 8.939597017 152993846 pstA Stress Phosphate limitation Sulfurovum sp. NBC37-1 8.898267498 8.865723346 8.717866419 8.089321229 8.216418499 8.15650916 8.034546028 8.161406881 8.195097903 8.286745751 8.187139079 8.398502217 223937982 sigma_24 Stress Sigma factors bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 8.764035716 8.740163787 8.700045131 9.049081685 9.049090382 8.912392056 8.851738802 8.96026328 8.832906973 9.007662931 9.147011116 8.209622732 237746571 phoB Stress Phosphate limitation Oxalobacter formigenes HOxBLS superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Oxalobacter;species:Oxalobacter formigenes; 7.904351884 7.971299639 8.079209496 7.321484097 7.218627166 7.10471071 7.111670721 7.932108344 7.333473953 7.229678367 7.3587387 88788871 sigma_70 Stress Sigma factors Synechococcus sp. WH 7805 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.962286147 7.890631363 7.751505397 8.096609209 8.00618276 7.663147458 7.852426025 8.049882397 7.804433749 7.908167709 7.884066791 262635626 B_lactamase_A Antibiotic resistance Beta-lactamases uncultured bacterium superkingdom:Bacteria; 8.471394919 8.873252729 8.822089519 8.152953903 8.624282047 8.851701436 8.977773952 8.339044471 9.087346259 8.353546091 8.690385695 8.700461909 168196086 AceB Carbon cycling Carbon degradation others Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 8.973262598 9.168479993 9.002098205 8.814082085 8.893501773 8.517092922 9.293754837 9.066186109 9.136928511 9.035257485 8.956801486 8.610396165 20090988 proV Stress Osmotic stress Methanosarcina acetivorans C2A superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina acetivorans; 8.890867077 8.58591542 8.9453375 8.366375849 8.126634895 8.278762423 8.186200248 8.171031201 8.333234733 8.168431473 8.272314986 8.46863416 85710414 linC Organic Remediation Pesticides related compound Erythrobacter sp. NAP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 8.576013463 8.340384973 8.404382616 8.281306588 8.254553574 8.599786265 8.4842783 8.537137987 8.407461906 8.275028962 8.181032778 121609213 silC Metal Resistance Silver Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 8.41718458 8.302428986 7.823576384 7.965212724 7.958088279 7.876520701 7.789178033 8.133732353 7.741670208 8.006127216 7.865774461 139478279 mer Metal Resistance Mercury uncultured soil bacterium superkingdom:Bacteria; 9.327121876 9.546398791 9.543639649 8.90370289 8.769239625 8.833533253 8.974847933 9.312623774 8.972024079 9.431134072 9.41620461 9.404213004 148559126 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Brucella ovis ATCC 25840 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Brucella;species:Brucella ovis; 8.880363077 8.912240862 8.909075435 8.398815616 8.032215343 8.611289651 8.872234605 8.52018654 9.023057064 8.534913484 8.433159044 8.740424738 222453513 atzA Organic Remediation Herbicides related compound Halorubrum lacusprofundi ATCC 49239 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 8.497814886 8.836008743 8.59655498 8.792423425 8.686620302 8.558477126 8.383644883 8.903634443 8.53482317 8.483549066 8.735324651 8.585144026 68231993 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.503930267 8.90959288 8.551631437 8.301831639 8.79925329 8.931481341 9.207561671 8.866216779 8.835252314 8.750455022 9.066980645 9.117304532 145244078 alkJ Organic Remediation Other Hydrocarbons Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8.665488214 8.589630189 8.770384593 8.189659491 8.032034508 7.884689326 7.874571919 7.67858887 8.261551597 7.849840417 7.816397327 7.987989044 162568577 aoxB Metal Resistance Arsenic uncultured bacterium superkingdom:Bacteria; 8.479962533 8.589802979 8.656849099 8.546044231 8.421012207 8.309899502 8.391226464 8.301055996 7.962022148 146401793 NADH_quinone_oxidoreductase Bioleaching Electron transport Acidiphilium cryptum JF-5 9.835922397 9.78588152 9.880955356 9.38990142 9.13676907 9.117396347 9.254139776 9.254151382 9.065950083 9.409866955 9.478538945 9.522343723 50955457 sigma_24 Stress Sigma factors Leifsonia xyli subsp. xyli str. CTCB07 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Leifsonia;species:Leifsonia xyli; 9.47787743 9.274632235 9.570804446 8.641893586 8.691155968 8.834500583 240857960 pstB Stress Phosphate limitation Rhizobium leguminosarum bv. trifolii WSM1325 8.546143683 8.58453306 7.998786685 8.683459292 8.566204225 8.792586436 8.689286942 8.958923813 8.779954954 8.857492347 9.07868251 8.949705035 148553989 vanA Carbon cycling Carbon degradation Others Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.281667095 8.461586787 8.344759813 7.334802062 7.600647804 7.904872675 7.639226288 7.900412618 7.483155813 7.242048283 224418474 vip virulence virulence protein Helicobacter canadensis MIT 98-5491 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter canadensis; 9.22806277 9.14395589 9.385445576 8.494853472 8.38333124 8.2465823 8.004007804 8.115656466 8.582788041 8.037417298 8.155158179 8.366062916 239988068 proV Stress Osmotic stress Streptomyces roseosporus NRRL 11379 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces filamentosus; 9.14924049 8.899451392 8.879864595 9.232058248 9.165256145 9.2633965 8.992421869 9.48502476 8.944712139 9.208457258 9.416099551 9.065085534 29652452 narG Nitrogen Denitrification uncultured bacterium 8.330435207 8.213198429 8.320477266 7.999514822 8.038178156 7.653638402 7.974995568 7.912473472 8.019969606 8.172503833 7.742482156 70731219 Catechol Organic Remediation Aromatics Other aromatics Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 9.404694496 9.505389352 9.625611344 9.163989074 9.080175115 8.947870418 9.244239696 8.920737088 9.231077379 8.933619154 8.856497038 8.966015242 24350716 pstB Stress Phosphate limitation Shewanella oneidensis MR-1 8.310223323 8.066114949 8.192710675 7.810638715 8.145059651 7.93682563 8.062794637 8.089915537 8.282382371 7.975426036 7.84421816 7.834636311 3153 mnp Carbon cycling Carbon degradation Lignin Phanerochaete chrysosporium 8.773031961 8.533177444 8.792232168 8.066231152 8.656363254 8.682588739 9.035014105 7.941952417 8.926137219 8.166812442 7.813370015 161382408 mer Metal Resistance Mercury Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 8.734500907 8.946824219 8.61609861 8.192349459 8.607653331 8.629333307 8.756341847 8.318890878 8.660808134 8.667593859 8.619645913 8.807676825 242130380 sigma_70 Stress Sigma factors Dickeya dadantii Ech703 8.56408351 8.403063356 8.436677043 7.305921624 7.321261323 7.257490475 7.483965555 7.330640662 7.442845186 7.497369005 7.323081891 7.761277387 167364506 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.979383656 8.975699604 8.812925474 8.409813007 8.37952384 8.478432037 8.601912602 8.423407568 8.541116324 8.350732787 8.196201718 8.330506202 260518458 ahpC Stress Oxygen stress Sanguibacter keddieii DSM 10542 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Sanguibacteraceae;genus:Sanguibacter;species:Sanguibacter keddieii; 8.602301335 8.663229597 8.503992105 8.295279101 8.223175553 8.471641813 8.602085802 8.616776395 8.856622245 8.591069115 149915310 proV Stress Osmotic stress Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.700806651 8.530627448 8.41712977 7.898015425 8.804217436 8.87032564 8.839366617 8.750762031 8.846034515 8.814602138 8.666261854 223892900 pstA Stress Phosphate limitation bacterium Ellin514 8.614474454 8.65814884 8.567712722 7.97927253 7.909201165 7.94431214 7.696289014 7.516374586 7.614997864 7.610887211 8.129852233 242122413 hydrogenase Energy process Energy process Desulfovibrio salexigens DSM 2638 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio salexigens; 8.159169449 8.122042907 8.014879109 7.682234301 7.800488696 7.978443668 7.778993062 7.645003986 7.689790584 7.526771275 7.746094951 108764466 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 9.139408185 8.81974578 9.401397597 8.721059578 8.653097041 8.737594371 8.622427011 8.741210692 8.635861017 8.74241481 8.822780634 9.500150909 219868139 pstA Stress Phosphate limitation Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 9.348047467 9.450402926 9.296891493 8.76923609 8.72601423 8.988289725 9.361960482 9.190078196 9.487983612 9.063552565 8.975216395 8.954236594 118165602 mhpC Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium avium 104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 9.345036479 9.213651872 9.335150027 9.109276547 8.718633131 8.730115862 9.29372493 9.081113362 8.893921569 9.056657361 9.252672809 9.097040379 154160043 phdCI Organic Remediation Aromatics Polycyclic aromatics Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 9.161850822 8.92445523 8.983518143 9.077168771 8.881338789 8.908382919 8.609291348 8.820646927 8.606533284 8.966261059 8.892158093 8.923444412 85058249 gyrB other category gyrB Sodalis glossinidius str. 'morsitans' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Sodalis;species:Sodalis glossinidius; 9.015760853 8.837079029 8.640086865 7.846117787 8.323736265 8.661192304 8.968411982 8.732649145 8.936378687 8.509935212 124004267 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Microscilla marina ATCC 23134 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Microscilla;species:Microscilla marina; 8.203227169 8.38064943 7.487662004 7.349245262 7.542644701 7.318515641 7.099789743 7.787483111 7.299890123 7.255112516 7.443292782 241764031 katE Stress Oxygen stress Acidovorax delafieldii 2AN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax delafieldii; 9.356282991 8.787884589 8.932001826 9.419923904 9.295528589 9.137264931 9.281422339 9.212559634 8.938643585 8.933463575 9.16107365 8.646352565 168195379 phn Organic Remediation Herbicides related compound Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 8.154108015 8.418578419 7.76898888 7.811918047 7.989447195 8.372671474 7.329418873 8.353419092 7.82734731 7.605447083 7.738285495 251772645 fnr Stress Oxygen stress Leptospirillum ferrodiazotrophum 8.251004819 8.447299239 8.487651888 7.706016388 7.833246163 7.939147415 8.035107774 7.767254863 8.382281808 7.808769339 7.508920499 7.866390381 50121086 nmoA Organic Remediation Aromatics Nitoaromatics Erwinia carotovora subsp. atroseptica SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 9.594082787 9.58534681 9.566971534 8.817001721 9.036149281 9.294724592 9.254244358 9.18283312 9.216547003 9.262209475 9.542866904 9.206181837 260615552 pstB Stress Phosphate limitation Vibrio furnissii CIP 102972 8.120140467 7.639707338 8.489307357 7.970097118 7.9272046 7.85219563 7.734425356 7.733229745 7.895601 7.643664345 7.559937345 7.609608146 126348485 ureC Nitrogen Ammonification Streptomyces ambofaciens ATCC 23877 8.831838462 8.837373381 8.529938234 8.033490173 8.185555687 8.36217121 8.193149428 8.804878354 8.235094686 8.26806031 8.42692802 39981876 gyrB other category gyrB Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 8.316370953 8.527007686 8.228978341 7.98953938 7.734390524 7.988357566 7.84747195 7.60225094 7.819555424 7.785773077 7.875352353 34102589 SMR_antibiotics Antibiotic resistance transporter Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 8.774162284 8.615811332 9.02091777 8.728080074 8.489514111 8.330149444 8.328832983 8.756068777 8.546939572 8.741197515 8.668891364 8.702076344 146342849 CODH Carbon cycling Carbon fixation Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 9.371162676 9.200497862 9.070072178 9.280438224 9.235089749 9.003585185 8.970384239 9.114794264 9.310119332 8.952315791 9.008012489 8.905987974 190893565 merP Metal Resistance Mercury Rhizobium etli CIAT 652 8.266597699 8.093160947 7.958776978 7.815341037 8.219296276 8.235297343 8.296542029 8.199772113 8.289643945 219541970 hly virulence hemolysin Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 8.337117396 8.294862652 8.141766093 8.279430569 8.125391852 7.947322978 8.132082266 8.185917804 8.280165173 8.261913492 8.230900805 89143200 gyrB other category gyrB Microbacterium luteolum superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium; 8.966635482 9.08456465 8.784539626 8.764862455 8.797923907 8.621581516 9.035332594 9.251818865 8.864936667 9.253330851 8.98007058 9.060365887 254950142 pcc Carbon cycling Carbon fixation Dyadobacter fermentans DSM 18053 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 8.689493182 8.791491241 8.97476022 7.756749704 8.535935611 8.527410538 8.83736712 7.445623608 8.857752922 8.115198083 8.224924018 8.237519568 256363064 sigma_24 Stress Sigma factors Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 8.907707539 8.829335501 8.867629736 8.561155909 8.514134139 8.47232888 8.403466739 8.383346578 8.722943162 8.558230056 8.700248883 8.741144523 95109709 iro virulence Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 8.514729008 8.124817631 8.170469439 8.754976574 8.727236516 8.594945025 8.574646537 8.627585253 8.425315625 8.554933533 8.404827847 7.923206103 89513040 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.273096978 8.116866933 8.084023529 7.616011825 7.720060494 7.710824201 7.684747546 7.57535871 7.92780168 7.602253053 7.560970651 7.726717527 121706158 phoA Stress Phosphate limitation Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 8.455159842 8.435591841 8.459028447 8.019371808 8.133163206 8.379270001 8.257459871 8.066465276 8.39756276 8.038552404 8.104935764 8.10880495 195364366 bphA Organic Remediation Aromatics Polycyclic aromatics Mycobacterium vanbaalenii PYR-1 9.074038349 9.155613575 9.132372561 8.441004394 8.376256607 8.395757463 8.081657742 8.064587352 8.358652325 8.365187036 8.39422698 8.612713782 57168953 cap virulence capsule Campylobacter coli RM2228 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter coli; 6.659442196 7.360880185 7.180766782 7.473901266 124266688 iro virulence Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 8.503970273 8.830472211 8.889154625 8.279661098 8.469025467 8.73677389 8.945294136 8.608518937 8.919898696 8.372351678 8.420297063 8.572269935 154247298 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.148221799 8.419021447 7.634951538 7.94641427 7.734020303 8.031741336 7.97853425 7.981594651 7.943234881 7.673535787 7.979453043 119714901 pcpB Organic Remediation Herbicides related compound Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.303451295 8.383492543 8.538643794 8.427921936 8.167113704 8.191605883 8.51276472 8.487406843 8.228530236 8.309269465 8.547777166 8.121806132 118733238 nagK Organic Remediation Aromatics Aromatic carboxylic acid Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.611224059 8.514261431 8.774206968 7.890311592 8.241775441 8.487889326 8.738389965 7.964869383 8.820548505 8.263945504 8.374244151 8.279341108 105896137 linB Organic Remediation Pesticides related compound Burkholderia cenocepacia AU 1054 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 9.088082057 9.051806708 9.177517151 8.480293119 8.106023839 8.531742325 8.186603987 8.032085593 8.423445606 259501925 srt virulence surface protein Lactobacillus antri DSM 16041 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus antri; 9.368813738 9.033316031 8.668364752 8.709123432 8.300876504 8.554621585 8.758527177 8.684212849 8.706309427 8.826778588 134134771 fnr Stress Oxygen stress Burkholderia vietnamiensis G4 7.273735025 7.761737239 7.462407687 7.835866658 220710089 vanA Carbon cycling Carbon degradation Others Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.651255382 8.819226401 8.492189607 8.474163077 8.260117923 8.708147297 8.568366401 8.711327118 8.723478561 8.92612404 8.452837204 149139071 clpC Stress Protein stress Lentisphaera araneosa HTCC2155 superkingdom:Bacteria;phylum:Lentisphaerae;order:Lentisphaerales;family:Lentisphaeraceae;genus:Lentisphaera;species:Lentisphaera araneosa; 9.035768597 8.887033169 9.031509263 8.424365766 8.201951141 8.16041943 7.992594673 7.850215164 7.973431201 7.965832463 8.378736421 227100384 xylA Carbon cycling Carbon degradation Hemicellulose Geodermatophilus obscurus DSM 43160 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Geodermatophilus;species:Geodermatophilus obscurus; 8.627314837 8.46465356 8.709958589 8.395749828 8.692618296 8.629580896 8.415754637 9.0879792 8.628399675 8.821107938 8.657404774 8.670380065 55791922 catechol_B Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 8.419172141 8.169900435 8.297290299 7.885533272 7.862149253 8.136846576 8.132138461 8.139700738 7.952997266 7.829633844 69259015 CopA Metal Resistance Copper Magnetococcus sp. MC-1 superkingdom:Bacteria;phylum:Proteobacteria;genus:Magnetococcus; 9.560117911 9.67472531 9.474435268 9.10514855 9.373358413 9.546236682 9.63181638 9.959883915 9.450374849 9.752415027 9.805516612 9.873738951 183227519 fnr Stress Oxygen stress Lactobacillus fermentum IFO 3956 8.317567016 8.443647946 8.45078444 8.392105068 8.517526097 8.344627752 7.675602979 8.272039597 8.087894809 8.21686841 8.192245953 8.395373685 149948840 phn Organic Remediation Herbicides related compound Alkaliphilus metalliredigens QYMF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus metalliredigens; 8.320608607 8.189782048 8.499812913 7.95070518 7.911911612 7.935313473 7.706242112 7.292861056 8.117316485 7.696967652 7.596647328 7.978570845 226090969 ppk Phosphorus Phosphorus utilization Gemmatimonas aurantiaca T-27 superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 8.652021536 9.046738642 8.461552117 8.463702427 8.448985138 8.910181329 9.09357304 8.491435031 9.267729856 8.532342062 8.561467895 8.572960346 227492489 sigma_24 Stress Sigma factors Mobiluncus curtisii ATCC 43063 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus curtisii; 8.510223155 8.425337005 8.558011088 8.569544362 8.443857097 8.037184265 8.397141996 8.535008965 8.564768922 8.252376935 8.017649752 8.200805061 77815140 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Shewanella putrefaciens CN-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella putrefaciens; 9.218718821 9.178302293 9.243278146 9.054249715 8.709019233 8.714270163 9.348032111 9.03856839 9.189809246 9.101483691 9.324555436 9.180534344 58001197 sigma_70 Stress Sigma factors Gluconobacter oxydans 621H superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter oxydans; 9.179252116 9.163008333 9.170944387 8.697787524 8.364188082 8.31512166 8.035957107 8.053370901 8.2945804 8.238557789 8.070932483 8.329539495 239930964 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Streptomyces ghanaensis ATCC 14672 9.662382684 9.881788177 9.656659034 10.27491463 10.02583759 10.23830656 9.515588894 9.485791227 9.642376885 255919682 hrcA Stress Heat shock Actinosynnema mirum DSM 43827 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinosynnemataceae;genus:Actinosynnema;species:Actinosynnema mirum; 10.53166239 10.59733852 10.70367659 10.22485635 10.26125065 9.860652474 10.59199305 10.49102048 10.56966133 10.49051664 10.42943367 10.48057241 145618229 ChrA Metal Resistance Chromium Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 9.40733687 9.229926811 8.996014688 8.825020528 8.688952693 9.047626402 8.950053762 8.756279698 9.250366972 9.145729592 9.190134725 9.17109028 87284596 fnr Stress Oxygen stress Synechococcus sp. WH 5701 8.443833244 8.276896073 8.525133418 7.719365194 8.087852307 8.102466016 8.044539995 7.67026441 7.816376479 7.591089637 7.716480687 260175067 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Bacteroides sp. D2 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 9.135061206 8.667514683 8.813882449 8.318745908 7.99941245 8.142952399 7.624804415 8.199622228 8.284744809 7.884502755 8.382559645 118619241 pstB Stress Phosphate limitation Mycobacterium ulcerans Agy99 8.809143187 9.016205508 8.959515901 8.606828812 8.526243057 8.308369763 8.33159403 8.368124015 8.613273039 8.22307836 8.036881577 8.433526066 85860482 alkK Organic Remediation Others Syntrophus aciditrophicus SB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Syntrophus;species:Syntrophus aciditrophicus; 9.418302148 9.555468274 9.568033545 8.930219654 8.749974544 8.753008718 8.804029802 9.144970586 8.924212342 9.308261367 9.286472613 9.356662976 126730283 CopA Metal Resistance Copper Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 10.05778563 10.02415025 10.02723492 10.37133799 9.994902942 9.681040991 10.2801212 10.08659228 10.10358575 10.04169746 10.01825687 9.995139305 21228110 pstA Stress Phosphate limitation Methanosarcina mazei Go1 8.166932484 8.439462789 7.522687095 7.243615486 7.286035986 7.297940296 7.294385272 7.611586583 17431162 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 8.633849401 8.663929997 9.025185718 8.845544119 8.648591358 8.354360276 8.542651798 8.765812225 8.805576913 8.906791292 8.75571775 8.92482939 221728375 nmoA Organic Remediation Aromatics Nitoaromatics Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 10.33265362 10.27099933 10.26369381 9.305557089 9.571353218 9.798307834 9.434464304 10.18299884 9.759833266 9.867944318 9.714455736 167778288 ppx Phosphorus Phosphorus utilization Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira biflexa; 8.532194391 7.958517325 8.258579714 7.224248306 7.221505625 7.010387434 7.047129986 6.992317776 164598090 exoglucanase Carbon cycling Carbon degradation Cellulose Infundibulicybe gibba superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Infundibulicybe; 8.764316341 8.789347343 8.796474496 8.341743978 8.208531043 8.43499299 8.351368787 8.178419576 8.42425695 8.207293794 8.212590109 8.356932668 158251628 APS_AprA Sulphur adenylylsulfate reductase uncultured archaeon 9.068212268 8.77704323 8.658179018 8.528318609 8.269493143 8.274062008 7.799605722 8.082230908 8.36257945 8.071693003 8.052130878 8.319411739 33238381 amyA Carbon cycling Carbon degradation Starch Prochlorococcus marinus subsp. marinus str. CCMP1375 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 9.056268512 9.166265259 9.152524239 8.467288446 8.545721956 8.411039098 7.959431182 8.02090569 8.178423453 8.364551572 8.176489817 8.530802567 77457967 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens Pf0-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 9.31409686 9.171397828 9.403387221 8.549025058 8.517539217 8.476391583 8.60699494 8.442900982 8.181689109 8.600593631 8.57335723 8.824492203 23015524 HBH Organic Remediation Aromatics BTEX and related aromatics Magnetospirillum magnetotacticum MS-1 9.464636406 9.439973265 9.423066999 9.012419067 9.094598703 9.115891815 9.191262161 9.297658687 9.111102617 9.471621702 9.480978066 9.387269433 41407115 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 10.33946198 10.46029586 10.34155314 10.04111915 10.41085765 10.73545579 10.71410905 10.42231772 10.2854325 10.16538894 10.60701388 10.43242433 61338416 BADH Organic Remediation Aromatics Other aromatics Corynebacterium glutamicum superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium; 8.218723643 7.918373176 7.568171715 7.780435813 7.631263259 7.479499309 7.326620639 7.651252165 7.213910715 7.352348415 7.313356201 77967181 MFS_antibiotic Antibiotic resistance transporter Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 9.443862144 9.335185746 9.575058171 8.997334496 8.895936051 8.848993989 8.662842433 8.78717074 8.845267177 8.78652 8.838387027 9.129223742 14587798 gyrB other category gyrB Thermotoga naphthophila superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga; 7.158679011 7.286696653 7.043022959 6.669864088 7.326809529 6.815522459 7.397808079 124875943 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Burkholderia cenocepacia PC184 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 10.99316694 11.06476258 10.58376477 10.84590973 10.56977506 10.79214942 10.9490175 10.69187068 10.8566412 10.30425651 10.48846076 10.44274369 77952905 CopA Metal Resistance Copper Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 9.211651129 9.015770592 9.330321703 8.237613 8.384596712 8.724163513 9.077395935 8.261128477 8.733632594 8.531482665 8.664576056 8.661086651 146191733 vanA Carbon cycling Carbon degradation Others Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.980079692 8.754921515 8.572196699 8.515464573 8.364916289 8.064795051 8.500673114 8.349758235 8.863027564 8.282304233 8.27386592 7.974072844 118731626 CadA Metal Resistance Cadmium Delftia acidovorans SPH-1 9.474448688 9.578108969 9.543395291 9.367011549 9.55707079 9.583295545 9.68736002 9.78579936 9.634728533 9.526843297 9.575253508 9.696677934 115255612 linC Organic Remediation Pesticides related compound Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.79736378 9.002933525 8.9813838 8.394288646 8.583186328 8.70306067 9.016354232 8.554523551 9.190321308 8.301467975 8.132760347 8.33725118 148284974 cspA Stress Cold shock Orientia tsutsugamushi str. Boryong superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales;family:Rickettsiaceae;genus:Orientia;species:Orientia tsutsugamushi; 8.158495291 8.257777925 8.120626389 7.486400424 7.444140088 7.470722229 7.078129212 7.769153926 7.124822506 7.488490243 162454831 ureC Nitrogen Ammonification Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 8.40904512 7.953484135 8.312577594 8.010189925 7.997774767 7.758407454 7.759178778 8.164107094 8.329300866 8.252941944 7.77342442 8.101077008 218441523 amyA Carbon cycling Carbon degradation Starch Cyanothece sp. PCC 7424 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.782741411 8.545689639 8.794832209 8.117305389 8.014783264 7.992709034 7.629021274 7.673540966 8.084314467 7.789295161 8.043221346 119355023 ahpC Stress Oxygen stress Chlorobium phaeobacteroides DSM 266 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 8.561072986 8.333097419 8.300745586 8.630983422 8.640546107 7.952558509 8.452439956 8.521567643 8.410894294 121699996 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 9.27369771 9.30858009 9.208786042 8.587649978 8.559278137 8.576703403 8.426930165 8.389273571 8.387852809 8.332358254 8.527404156 8.714775004 209401670 narG Nitrogen Denitrification uncultured bacterium 8.369892779 8.287323645 8.52762647 8.459314543 8.561336797 8.597532236 8.370979604 8.539061819 8.591623435 8.356190587 8.513403204 8.749888039 171060107 fnr Stress Oxygen stress Leptothrix cholodnii SP-6 8.498957355 8.649853771 8.088896668 8.51156842 8.019121834 7.979354104 7.643639319 114705882 sigma_32 Stress Sigma factors Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 8.807756574 8.840938172 8.505170746 8.793930574 8.557552926 8.392945573 8.736809235 8.077781278 8.867268463 8.97577388 119775514 AceA Carbon cycling Carbon degradation others Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 8.088026977 8.042310788 7.54585746 7.867854458 8.071519221 7.452672832 8.097666762 8.078029015 7.791170349 8.126534166 8.001596584 47572055 ppx Phosphorus Phosphorus utilization Rubrivivax gelatinosus PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 8.473681875 8.528097661 8.482429776 7.270461722 7.639231784 7.844648645 7.946450089 7.216345436 8.45486242 7.625631506 7.319089337 8.008612463 149178306 catB Organic Remediation Aromatics BTEX and related aromatics Planctomyces maris DSM 8797 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces maris; 8.181761172 8.046981999 7.703904716 7.715797477 7.787886701 7.369128746 7.593096464 7.796869664 7.685215333 7.570387582 7.546612376 89902345 AceB Carbon cycling Carbon degradation others Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 9.662023398 9.508222407 9.393115894 9.457038929 9.424130502 9.111598326 9.460121458 9.658990036 9.38524789 9.673763846 9.485538613 9.604698345 15597336 SmtA Metal Resistance Miscellaneous Pseudomonas aeruginosa PAO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.459053021 8.523629904 8.071499238 7.933061561 7.945049212 8.275848928 8.317758397 8.420505437 8.04937043 116179488 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 8.42764449 8.742944125 8.730068998 8.40494002 8.480983817 8.628519363 8.05251964 8.406191457 8.22353617 8.297964218 8.462866497 8.656359638 254266623 sox Sulphur Sulphur oxidation Methylobacterium extorquens DM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 8.314980118 8.015747526 8.211054988 8.15478155 7.892927078 8.449836069 8.197394279 8.08853365 8.287294357 8.07098028 120401797 sigma_24 Stress Sigma factors Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.752502253 8.904899576 8.549141677 8.329876699 8.288658639 8.803795356 9.185414871 8.703596399 9.218949348 8.423542657 8.652699484 8.437689561 138894329 fnr Stress Oxygen stress Geobacillus thermodenitrificans NG80-2 8.488546757 8.4543822 8.262737831 8.030608102 8.71025939 8.884124471 8.690256405 8.838087267 8.424902479 8.380746381 8.474047563 262031871 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Vibrio cholerae CT 5369-93 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 9.273638416 9.257657675 9.309607239 8.396393548 8.589031057 8.692754813 9.141068304 8.862485619 8.933655288 8.953950026 8.994928091 48131 amyA Carbon cycling Carbon degradation Starch Thermomonospora curvata superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora; 8.915051129 8.89287878 8.45621783 8.057359653 8.263340858 8.668020585 9.007825247 7.429680018 8.864991716 8.096495043 8.294732699 8.202231368 52425369 MATE_antibiotic Antibiotic resistance transporter Mannheimia succiniciproducens MBEL55E superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Basfia;species:Mannheimia succiniciproducens; 8.14505379 8.255866929 8.395358772 8.20985738 8.059811068 8.050455625 7.918568803 8.167118387 8.273574696 7.903309848 8.059970682 8.047681563 169762273 katE Stress Oxygen stress Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.246512704 8.076630249 8.216249574 7.810424549 7.84025424 8.228624708 7.97168616 8.346246386 8.13239947 8.322045131 8.290945557 124515943 glycosyl_transferase_EPS Bioleaching EPS Leptospirillum sp. Group II UBA 8.606981998 8.334059454 7.839847195 7.969652521 7.982973642 7.287243944 7.249994733 7.423495781 7.514012576 7.823745013 218883554 atzA Organic Remediation Herbicides related compound Desulfurococcus kamchatkensis 1221n superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Desulfurococcus;species:Desulfurococcus kamchatkensis; 9.226883035 9.132540538 9.332382885 9.025026663 8.717543666 8.717352261 8.623445818 8.790125222 8.452444752 8.783541262 8.71108133 8.827336705 86283991 MFS_antibiotic Antibiotic resistance transporter Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 9.699526047 8.996467714 8.773475174 8.784998409 8.644401485 8.590226405 8.993557238 77971437 iro virulence Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.542786138 8.741730376 8.549804629 9.535442793 9.384014156 9.616678464 8.991273545 9.64184326 8.946379264 9.123808463 9.451435235 9.130749848 88789107 Arylest Organic Remediation Aromatics Other aromatics Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 8.651804173 8.595723257 8.663007048 8.118092575 8.074765492 7.910237709 7.937779899 7.768434348 8.174943631 7.764907988 7.739120464 8.103422335 255532816 ahpC Stress Oxygen stress Pedobacter heparinus DSM 2366 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter;species:Pedobacter heparinus; 8.535742653 8.675421608 8.095865801 7.812206683 7.876353934 7.564252751 7.684702666 8.030442703 7.85053686 7.793800814 7.965357266 170726764 fnr Stress Oxygen stress Shewanella woodyi ATCC 51908 8.112796995 7.833034517 8.14778792 7.117981083 7.118517412 78355574 dsrA Sulphur sulfite reductase Desulfovibrio desulfuricans G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 8.232704194 8.329676135 8.528222252 8.077205657 8.096351373 8.248854033 8.275270619 8.585988279 8.522823572 8.823077137 8.652194099 8.500947593 227069629 NiR Nitrogen Assimilatory N reduction uncultured archaeon 8.845028729 8.788737265 8.839231337 8.924323483 8.750701912 8.701323021 8.478155379 8.626374424 8.794632704 9.114944333 8.504012272 91801800 narJ Stress Oxygen limitation Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 8.21944169 8.184075849 8.485814894 7.900934817 7.805846236 7.754770714 7.580167802 7.282201798 7.903295225 7.560790336 7.647556199 7.768008706 163733671 CODH Carbon cycling Carbon fixation Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 8.452992878 8.565504361 8.889762958 7.78359879 7.954722422 7.290291665 8.123145812 7.733799243 7.727080927 8.021840174 146303269 cytochrome_c Bioleaching Electron transport Metallosphaera sedula DSM 5348 7.333492378 7.023276563 7.104110336 6.743859315 7.412801832 195977899 gyrB other category gyrB Streptococcus equi subsp. zooepidemicus MGCS10565 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus equi; 8.760544426 8.809841367 8.438296872 8.198608298 8.351020271 8.374818753 8.195370316 8.112944382 8.168713173 8.13086138 56962489 narG Nitrogen Denitrification Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 8.268470393 8.450597837 7.678291701 7.967491817 8.398558415 7.710466086 8.550701236 7.398530999 7.540534076 8.020384142 13422880 ArsC Metal Resistance Arsenic Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 8.670203643 8.495574588 8.823092456 8.878695248 8.544583966 8.185485012 8.444253749 8.502703059 8.635943063 8.6400263 8.795126975 8.267828391 153833270 colonization_factor virulence colonization factor Vibrio harveyi HY01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 8.813191713 8.652959531 8.997291512 8.404956299 8.129451623 8.069825533 7.953059919 8.162006259 8.211637262 211590658 chnB Organic Remediation Other Hydrocarbons Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 8.553061244 8.426780276 7.570905347 7.436885716 7.636525747 7.583343624 7.241784724 7.313235383 7.263668383 7.599418858 90420449 pcaG Organic Remediation Aromatics Other aromatics Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 9.127730385 9.360305431 9.060956779 8.673148544 7.828946409 9.063847966 9.418126532 9.109719757 8.880587101 8.827895067 9.042318526 8.998295463 146277090 cytochrome Energy process Energy process Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 9.692213758 9.73561624 9.591333786 8.370985333 9.228091321 9.412453009 9.948540057 8.897990703 9.952760112 9.027920652 9.224046537 206565652 dmsA Organic Remediation Others Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 8.360013994 8.207988246 8.331349566 7.905466374 7.862455281 7.790226867 7.915397248 7.607632742 8.246417761 7.686875755 7.685770966 7.764428448 3157594 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 8.293566852 8.534493075 7.724501696 7.722698742 7.784580686 6.924159659 7.077061262 7.816370079 7.302205752 7.641404657 7.729206958 89338509 TerC Metal Resistance Tellurium Mycobacterium flavescens PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 9.826836169 9.648328675 9.880193588 9.19821109 9.368144762 9.356217131 9.923732594 9.148098283 9.779093211 9.600045051 9.500816662 9.5397212 118435893 rubisco Carbon cycling Carbon fixation Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 8.736804542 8.381768788 8.290708536 7.703113203 8.229017098 8.167386016 8.592529446 7.862671889 8.595823208 7.924329874 7.798267991 7.568529842 46318036 tftH Organic Remediation Aromatics Chlorinated aromatics Ralstonia sp. SJ98 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 9.238967388 9.350460599 9.177683363 9.155765741 9.178529448 8.84276645 9.206269472 9.312475909 9.436451979 9.292735255 9.248260447 9.415996127 256779531 sigma_70 Stress Sigma factors Streptomyces hygroscopicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces hygroscopicus; 8.538729831 8.718055674 8.938507865 8.423325916 8.725281792 8.694426817 8.893105358 8.869749218 8.844965703 9.025204835 8.798550635 163761043 pimF Organic Remediation Aromatics Aromatic carboxylic acid Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 8.997881685 9.224775436 9.025567833 8.928792527 8.828408162 8.755731935 8.606183138 9.003982153 8.779517004 8.93952536 8.870067286 8.861084995 27530795 gyrB other category gyrB Gordonia amarae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 8.029365314 8.318422835 8.468167173 8.177240216 8.333841491 8.201295142 8.616998507 8.328652322 8.530203953 8.087803756 8.380713761 93456273 sigma_70 Stress Sigma factors delta proteobacterium MLMS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 8.833514424 8.785738094 8.739710442 8.565745703 8.430647843 8.244432784 8.312093521 8.656667334 8.728279041 8.563933734 8.478175766 8.572860852 115377575 type_III_secretion virulence secretion Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 8.830223204 8.602189123 8.064938936 8.638201078 8.304495047 8.046120778 8.263739063 8.534551573 7.87357279 8.673110068 8.004876208 121307452 fnr Stress Oxygen stress Thermosinus carboxydivorans Nor1 8.508711395 8.461508185 8.460662143 7.766373516 7.806018942 7.885915468 7.873372618 7.050640903 8.363008889 7.433475937 7.237801988 7.396713092 142850069 NirB Nitrogen Assimilatory N reduction Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 8.808134375 8.614714871 8.455305566 8.415126655 8.288121689 8.424075529 8.518847202 8.36234787 8.660415211 8.266000031 8.245527557 8.283633239 206576715 pcaG Organic Remediation Aromatics Other aromatics Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 8.220297337 8.418851525 8.070674565 8.364808795 7.860807449 7.688430822 8.075999275 8.188111242 8.088248283 7.91212863 7.768071079 119884258 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Salinispora arenicola CNS205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 8.489983832 9.424032579 8.963314506 8.14106811 8.509043967 8.699093033 9.155428198 8.582349876 9.568784504 8.601739497 8.163132491 8.912290056 13475310 type_III_secretion virulence secretion Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 9.744266715 9.688011588 9.825242694 9.351402513 9.373525972 9.161321387 9.588040727 9.73049387 9.370870642 9.190387878 9.458244525 227183317 pstB Stress Phosphate limitation Corynebacterium glucuronolyticum ATCC 51866 8.015000858 8.210351097 8.127434474 8.378789025 8.123572629 8.335428997 8.005717286 8.241616738 7.860116622 7.734935258 7.909877802 119695017 pcpB Organic Remediation Herbicides related compound Mycobacterium sp. KMS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 9.614602528 9.558237101 9.236743438 8.634794182 9.12585759 9.405228417 9.671537006 8.733314614 9.664454359 9.178027475 9.138226825 9.336217276 220898656 APS_AprA Sulphur adenylylsulfate reductase gamma proteobacterium symbiont of Laxus oneistus 8.525373265 8.336369419 7.983471463 7.995567837 7.751053111 7.632995216 7.942296549 8.017114116 8.480043478 8.610491374 88813010 obgE Stress Radiation stress Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 9.037328025 8.733393934 9.08743266 8.610273857 8.522523529 8.446880347 8.934833651 9.074563303 9.309140805 8.878604781 8.739335106 8.704739975 34017032 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 8.527454206 8.293917051 8.669509908 8.715499151 8.618219441 8.219791176 8.317363445 8.800826741 8.466685816 8.490873528 8.43566825 8.522957823 162430697 cnrA Metal Resistance "Cobalt,Nickel" Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 8.902755714 9.029801539 8.811408378 8.475449041 8.347279635 8.647317783 9.041740923 8.6381183 8.807476572 8.535706765 8.598801841 8.412884355 218241208 pstA Stress Phosphate limitation Alicyclobacillus acidocaldarius LAA1 9.912268499 9.722162135 9.954822947 9.526135967 9.918112658 9.505469819 9.351720611 10.29391327 9.696707746 9.988379337 9.944155949 213014728 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Thermotogales bacterium TBF 19.5.1 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Kosmotoga;species:Kosmotoga olearia; 9.683055379 9.609823714 9.76270136 8.892486275 8.713089725 8.687585068 8.716570892 8.752486491 8.759249795 8.765934843 9.159886878 iegHydrogenase10 hydrogenase Energy process Energy process 8.753356787 8.833377295 9.058900065 8.693037451 8.491719826 8.400544661 8.449547456 8.445802803 8.624231977 8.403865469 8.422072978 8.539224496 46201123 Arylest Organic Remediation Aromatics Other aromatics Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 9.335617881 9.188352576 8.732493073 9.012483106 9.370261103 9.487967846 9.198136447 9.574455979 9.359772548 9.398866489 9.606915706 9.415398189 256760446 narI Stress Oxygen limitation Thiomonas intermedia K12 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas;species:Thiomonas intermedia; 9.059946029 8.953891324 9.121464135 8.662397721 8.818351901 8.624380573 8.866379546 9.027817508 8.508839231 8.502232611 8.866891506 227188417 ctsR Stress Protein stress Lactobacillus paracasei subsp. paracasei ATCC 25302 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus paracasei; 8.026119304 8.026709268 7.733805655 7.882040253 7.737495455 7.591813645 8.118045255 8.012841765 7.851084335 7.441783939 7.729789421 239991742 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Streptomyces roseosporus NRRL 11379 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces filamentosus; 8.681466044 8.484096193 8.541691272 8.371739258 8.116830294 8.050667449 8.106937391 8.331818256 8.338277547 8.159132592 8.24647106 221083402 tfdA Organic Remediation Aromatics Chlorinated aromatics Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 8.682985664 8.331817352 8.624232918 8.713899703 8.345099034 8.030697015 8.481649949 8.592725979 8.385272321 8.309902916 8.244578132 8.129599324 111150342 mhpA Organic Remediation Aromatics Aromatic carboxylic acid Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 8.791238564 9.590693669 9.10776079 8.873403058 8.74366052 9.505936424 9.669726348 9.572143721 9.239842407 9.404016738 9.402776222 9.491995225 210158763 cellobiase Carbon cycling Carbon degradation Cellulose Collinsella stercoris DSM 13279 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella stercoris; 8.582898229 8.332890299 8.770391001 8.527897125 8.402304848 8.184653168 8.337491223 8.545659547 8.459988892 8.279364489 8.338622814 8.514532174 154157185 glnA Stress Nitrogen limitation Parvibaculum lavamentivorans DS-1 9.156807428 8.949971818 9.119275318 8.302375688 8.372525694 8.291617278 8.517056871 7.978561901 8.412057056 8.245746824 8.289163329 8.644805155 118503722 fnr Stress Oxygen stress Pelobacter propionicus DSM 2379 8.817756056 8.809795976 8.733696276 8.59545067 8.684935406 8.622600215 8.733698465 9.113897291 8.722732888 8.847878247 8.620079677 8.777459385 84502689 glnA Stress Nitrogen limitation Oceanicola batsensis HTCC2597 8.425621834 8.596531821 8.569781144 8.093360356 8.257980546 8.533506188 8.733903533 8.262130623 8.203784089 8.361756352 8.160036668 148570350 pstC Stress Phosphate limitation Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 8.360217268 8.688367177 7.764392617 7.905373032 7.920715607 7.834407678 7.359817651 7.614477942 7.54357576 7.723777493 89145066 ppk Phosphorus Phosphorus utilization Microbacterium aurum superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium; 8.140518758 8.07157901 8.233162519 7.857290307 7.780479924 7.881302325 7.564444756 7.990786433 7.816153563 8.073722221 8.015799761 8.078004967 258555979 phoB Stress Phosphate limitation Nakamurella multipartita DSM 44233 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 9.183697447 8.883654998 8.96908261 8.356246077 8.446844461 8.859866239 8.793138243 8.700228668 8.77403893 8.576169217 8.701471152 8.714792773 88917166 ChrA Metal Resistance Chromium Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 8.70325469 8.554226055 8.558050676 8.112078468 7.805919607 8.268769414 8.435341362 7.981174349 8.139367017 7.809633898 8.244393794 119767296 cda Carbon cycling Carbon degradation Starch Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 9.008217543 8.946525189 8.686295177 9.030858667 9.23464453 9.130353169 9.266724895 8.802925858 8.90046546 9.325665491 8.968175003 70930914 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.357164212 8.183208119 8.533073169 8.206910025 8.115642636 7.942813756 7.9134254 8.300505524 8.37535678 8.038921517 8.241228966 8.133406188 228568449 obgE Stress Radiation stress Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 8.650412616 8.696385754 8.776208217 8.012135813 8.588371076 8.425611153 8.692684253 7.284471165 8.691564706 8.170270376 8.250470429 7.982244088 87200962 iro virulence Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 8.780620215 9.128357974 8.998378091 8.148561968 8.345368136 8.969971729 9.311045438 8.89431668 9.087631149 8.824024344 8.889546927 8.955923999 88857937 vanA Carbon cycling Carbon degradation Others Pseudoalteromonas tunicata D2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas tunicata; 8.552908879 8.281738759 8.525853358 8.304349427 8.032565955 7.990913882 7.680723029 7.382074006 8.265965271 7.695578475 7.942844313 94314465 vanA Carbon cycling Carbon degradation Others Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.650143057 8.686925669 8.33956336 8.345115002 8.027586754 8.057019554 7.987475729 7.773266085 8.146078558 8.104066773 50122084 pstA Stress Phosphate limitation Pectobacterium atrosepticum SCRI1043 7.537176277 7.551874986 7.410796979 7.428546138 7.712100813 7.847073183 7.371109515 7.598659485 209401896 narG Nitrogen Denitrification uncultured bacterium 8.634165503 8.877950564 8.938502448 8.620071049 8.817149308 8.680728755 8.766122532 9.059536274 8.671167971 9.012469405 8.648186702 8.572613547 41394792 linB Organic Remediation Pesticides related compound Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 9.050856407 9.01016122 9.281591213 9.486488048 9.413603217 8.952326644 9.402436288 9.890560581 9.468846737 9.722982068 9.424857529 9.617755122 144947381 trzN Organic Remediation Herbicides related compound Petrotoga mobilis SJ95 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Petrotoga;species:Petrotoga mobilis; 8.746575386 8.589391325 8.948702759 8.288987404 8.106058646 8.194252744 7.991327302 8.067446565 8.085310058 7.990700526 8.021631752 8.520964913 269958878 sigma_70 Stress Sigma factors Anaplasma centrale str. Israel 9.298777393 9.383560274 9.458413793 8.817382093 8.855688784 8.767964493 8.637583704 8.772002086 8.599321439 8.69889648 8.732691085 8.975379926 171184822 dsrB Sulphur sulfite reductase Thermoproteus neutrophilus V24Sta 8.82339889 8.962792958 8.764333599 8.053946556 8.205500299 8.331338004 8.495907778 8.931969249 8.809868715 8.923195481 8.850343141 238750477 proW Stress Osmotic stress Yersinia rohdei ATCC 43380 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia rohdei; 8.82989407 8.714054371 8.547294261 8.322236198 8.231144872 8.161177339 8.154644971 8.130227545 8.225606684 8.156482454 8.087386579 8.316607525 117949578 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 8.833266954 8.791367978 8.704077067 8.172678241 8.400667953 8.572335447 9.074083539 8.230984576 8.782987623 8.41607259 8.349381756 8.466213654 113868193 AceB Carbon cycling Carbon degradation others Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 9.083301681 9.243947162 8.993871048 8.389314796 8.687959059 8.904604702 9.176808146 8.885060959 8.596250215 8.700027418 8.550020846 118593529 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 9.975573056 9.138199143 8.940016976 9.77350669 9.808553532 9.582904468 9.643651458 9.656528767 9.133109727 9.609051454 9.283456268 9.199351144 37575469 bphA Organic Remediation Aromatics Polycyclic aromatics Mycobacterium sp. PAH2.135 9.763579249 9.776731358 9.759714989 9.108368113 9.044895638 9.027740565 8.708055366 8.648779023 8.900997529 9.26508496 110821037 akbF Organic Remediation Aromatics BTEX and related aromatics Rhodococcus sp. RHA1 8.345889325 8.396040855 8.581584434 7.126206888 8.234792541 8.332261341 8.59407435 7.740681703 8.781740581 8.108522133 8.116472332 8.20541699 197715299 TerD Metal Resistance Tellurium Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 10.0029335 9.90762097 10.05498621 10.31856068 10.22796135 9.705545675 10.13135721 10.62811917 10.33771441 10.38350001 9.864435057 219939159 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.789715655 8.773979998 8.530870398 8.069609327 8.55358582 8.667169729 8.295454659 8.961096944 8.867785471 9.036061412 8.590473123 169850992 phenol_oxidase Carbon cycling Carbon degradation Lignin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 8.259520383 8.464073006 9.0627607 8.256476971 8.012342448 7.97416094 7.655209059 8.09505935 8.053537766 226094243 endochitinase Carbon cycling Carbon degradation Chitin Brevibacillus brevis NBRC 100599 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus brevis; 9.511597663 9.519514733 9.554539321 8.78207379 9.008116937 9.390444484 9.22973979 8.618647327 9.363244014 8.879970138 8.924574956 9.016334301 78694552 rubisco Carbon cycling Carbon fixation Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.410141333 7.668151749 7.306373127 7.544620953 7.644887323 210076904 alkB Organic Remediation Other Hydrocarbons Mycobacterium austroafricanum superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 9.464569053 9.546022125 9.619695937 9.058839219 9.28109422 9.362063688 8.98165604 9.572538924 9.254929683 9.141030748 9.346219211 149145461 ureC Nitrogen Ammonification Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 9.921412905 9.776528083 9.73496548 9.490688983 9.466725105 9.309372561 9.389819874 9.606657382 9.453398401 9.631777938 9.776474462 9.762829805 184204571 xylA Carbon cycling Carbon degradation Hemicellulose bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 9.599934419 9.624200098 9.666893493 8.888697364 9.115826246 8.913727467 9.015787234 8.942768833 8.932303135 8.925230688 9.286669116 113888806 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Shewanella sp. MR-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 9.156915717 9.368636493 9.335950666 9.040953536 9.102479417 9.023781578 9.245816785 9.389172644 9.074809054 9.315857229 9.374150718 9.283305313 16329675 ureC Nitrogen Ammonification Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 8.076156913 8.385444607 8.313326405 8.31080301 8.3069774 8.538096286 8.604665115 8.398348165 8.327007789 8.208684828 8.588699483 8.205588136 266623709 ureC Nitrogen Ammonification Clostridium hathewayi DSM 13479 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 8.259694016 7.962102051 8.264024394 8.121862474 7.964114069 7.517924378 8.187594431 7.669462521 8.059791828 7.892198508 8.203426284 118680846 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 8.320493297 8.18758614 8.475779701 8.14310311 8.178888359 8.107022233 7.771220257 8.132147943 8.237377149 8.100038101 8.411988104 7.8762371 220708127 nagI Organic Remediation Aromatics Aromatic carboxylic acid Geobacillus sp. Y412MC61 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.294898979 8.321582948 8.427731846 7.484618807 7.426880377 7.416536083 7.027597878 6.483548561 7.591941882 7.329574584 7.152101452 7.382429295 160365231 sigma_24 Stress Sigma factors Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 9.333114012 9.52475826 9.533584638 9.034871527 9.14752574 9.065587491 9.007808658 8.850373294 8.894570735 9.299676183 9.375339177 9.305026331 145297807 cydB Stress Oxygen limitation Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 8.801644375 8.763028268 8.913020185 8.202386298 8.518557687 8.598995261 8.357785458 8.896059269 8.566321201 8.892445391 8.966776248 8.616223934 121495608 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.932913225 9.204226734 9.023252969 8.479495748 8.667202122 8.686883008 9.266281913 8.394548357 9.58738978 8.631186639 8.444956316 8.500362363 194334393 ahpC Stress Oxygen stress Prosthecochloris aestuarii DSM 271 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Prosthecochloris;species:Prosthecochloris aestuarii; 8.15363114 8.365577476 7.549317737 7.829039607 8.011367121 7.594883765 8.316866283 7.356518545 7.564346967 7.578278142 197104264 fnr Stress Oxygen stress Phenylobacterium zucineum HLK1 8.516587338 8.753295424 8.887868544 8.096120419 8.090534969 8.237409994 8.462353272 8.215365247 8.872233395 8.136891912 8.086873418 8.076884958 149130553 ChrA Metal Resistance Chromium Bacteroides caccae ATCC 43185 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides caccae; 9.203551887 9.144627162 9.501772593 8.630466087 8.539597522 8.520752084 8.565288556 8.301919378 8.491111824 8.571234052 8.595858562 8.756906891 114561201 pimF Organic Remediation Aromatics Aromatic carboxylic acid Shewanella frigidimarina NCIMB 400 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella frigidimarina; 8.125095898 8.215745371 7.688094722 7.429250281 7.314447444 7.069232276 7.758003188 7.537649081 7.45847909 7.645069561 186473966 ALN Organic Remediation Others Burkholderia phymatum STM815 7.469187386 7.435782281 7.020878359 7.405991193 7.056359705 7.49076754 156532084 catB Organic Remediation Aromatics BTEX and related aromatics Enterobacter sakazakii ATCC BAA-894 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 10.1481147 10.23693343 10.3086995 9.352944209 9.400352051 9.455942738 9.632871038 9.308689428 9.436019529 9.286701099 9.44629525 9.748735927 126659614 phn Organic Remediation Herbicides related compound Cyanothece sp. CCY0110 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 9.003699027 9.122211672 9.25890413 8.717420306 8.588711395 8.8501379 9.151256042 8.688998862 9.262406201 8.640521432 8.557211647 8.583139417 210630067 pstB Stress Phosphate limitation Collinsella stercoris DSM 13279 9.86790276 9.772016805 9.944010928 8.837245448 8.703611467 8.619454874 126178328 mcrA Carbon cycling Methane Methane production Methanoculleus marisnigri JR1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanoculleus;species:Methanoculleus marisnigri; 8.852263944 8.918316927 8.740251793 9.037662044 9.010868246 9.116727136 8.449186003 9.084597919 8.602893103 8.868934371 8.917504889 8.48834938 iegcoxL23 CODH Carbon cycling Carbon fixation 8.669503302 8.870262009 9.016896843 8.741130835 8.678275831 8.70706508 8.953978963 8.644827356 9.007329999 8.578976654 8.783377239 8.488999346 110818044 adpB Organic Remediation Pesticides related compound Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.498603491 8.425492525 8.279325183 8.7428702 8.546634326 8.079000099 8.098402288 8.676932752 8.469127301 8.582353527 8.092997034 8.343645498 13958044 nirS Nitrogen Denitrification Azospirillum lipoferum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum; 8.310417533 8.351315405 8.51801246 7.634801672 8.123960489 8.608023825 7.897033383 8.572772423 8.195554749 8.280494131 8.401964067 84717127 vanA Carbon cycling Carbon degradation Others Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 9.05393086 9.054708167 9.266256028 8.391799739 8.295268184 8.475573981 8.672499386 8.241432945 8.920943157 8.500420275 8.446853759 8.680672413 241771570 Tet Antibiotic resistance other Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 8.946758845 8.452949435 8.768185551 7.932703315 8.141065625 7.821318088 7.497521219 7.253632208 8.224616719 7.434714736 7.61994524 7.833213673 32035311 nrfA Nitrogen Dissimilatory N reduction Actinobacillus pleuropneumoniae serovar 1 str. 4074 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus pleuropneumoniae; 8.241189092 8.342294167 7.572644166 7.636920991 7.94487801 7.617654426 7.60525982 7.542340592 7.757383367 7.800261405 116754215 CopA Metal Resistance Copper Methanosaeta thermophila PT 8.116681734 8.041930513 7.91566091 8.104402161 7.368251644 8.044029954 8.15154855 8.158345981 7.861376239 211957234 sox Sulphur Sulphur oxidation Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 8.737564902 8.192814618 8.351149783 8.583408483 8.47835327 8.331523605 8.718762835 8.519557296 8.656574277 8.466934752 8.610178893 8.344032611 148554586 glnA Stress Nitrogen limitation Sphingomonas wittichii RW1 9.410314956 9.486212328 9.182305051 9.226975494 8.917693131 9.140336011 9.385396613 9.116318168 9.435600368 9.269844251 9.565422332 9.205559974 117986546 silC Metal Resistance Silver Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.334697504 8.123546401 8.538110759 8.431700604 8.298183366 8.075190843 7.944601016 8.18931453 8.093826612 8.188416443 8.255484397 8.255256394 219859372 katE Stress Oxygen stress Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 8.395547348 8.666051484 8.720616435 7.944551107 8.251355527 8.342080031 8.614565027 7.591945216 8.806929259 7.825664386 7.653991995 7.910020978 260535205 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Prevotella veroralis F0319 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella veroralis; 8.86251243 8.119702955 8.545074466 8.536232887 8.339391791 8.174249138 8.391200135 8.246361587 8.271868791 7.950064576 7.936230851 8.088383955 78518946 nasA Nitrogen Assimilatory N reduction Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.839532694 8.368999789 8.594182337 8.969044941 8.832185599 8.704849085 8.889100152 8.746437324 8.540102363 8.866880524 8.716911858 8.687157038 78223987 arsM Metal Resistance Arsenic Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 8.121771553 8.082439163 7.555650473 7.449649288 7.627654546 7.568312464 7.270038629 7.403344777 7.783795045 7.369463054 7.950957769 260452426 amyA Carbon cycling Carbon degradation Starch Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 8.781814702 8.484452311 8.70067019 8.942271919 8.72221774 8.440041983 8.798687453 8.862588434 8.847682386 8.933191678 9.09815942 8.400696209 270495517 iro virulence Acidovorax avenae subsp. avenae ATCC 19860 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax avenae; 8.566528995 8.589410187 8.536671732 8.522116674 8.469474706 8.622447005 8.287143919 8.25740065 8.55457256 8.333633107 8.680812607 8.277565418 222110212 CopA Metal Resistance Copper Diaphorobacter sp. TPSY superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax ebreus; 8.595125797 8.580418808 8.200910344 8.527081823 8.289291676 8.092304378 8.463343006 8.440802676 8.380058657 8.159183525 8.304576619 256360018 endochitinase Carbon cycling Carbon degradation Chitin Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 8.350321272 7.988367657 8.250495615 8.05511715 7.596939662 7.794475058 8.239681716 8.370005497 7.734550035 7.745991356 7.807508741 212001342 glucoamylase Carbon cycling Carbon degradation Starch Schizosaccharomyces japonicus yFS275 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Schizosaccharomycetes;order:Schizosaccharomycetales;family:Schizosaccharomycetaceae;genus:Schizosaccharomyces;species:Schizosaccharomyces japonicus; 8.455481834 8.428649683 8.41986133 8.373585436 8.199457625 8.270361874 8.443799033 7.915745702 8.629545318 7.990458429 8.029925306 7.935781731 93355167 CopA Metal Resistance Copper Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.899717361 8.88172114 8.924712519 8.109604121 7.873384335 8.324095735 8.459179118 8.022542379 8.371797344 8.318249867 8.180081283 8.336733588 29466006 norB Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 10.57103932 10.61138042 10.62438494 10.14570447 10.25555277 10.37249588 10.05072295 9.625138839 9.921985626 10.1491014 10.43970071 10.25418114 29606248 clpC Stress Protein stress Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 8.235010207 8.483663103 7.853847538 7.863546209 7.704079467 8.088854461 8.312331309 8.44515519 8.319246619 8.120854598 8.196648172 87281050 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 10.02817918 10.10003403 10.14496344 9.136473529 9.240357741 9.164066709 9.463825378 9.052830594 9.237188585 9.226703185 8.99102176 9.47202855 85697590 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nitrobacter sp. Nb-311A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter; 8.957852409 9.05383544 8.861553642 8.792965287 8.795350063 8.764046755 8.775362121 8.845602257 9.022225541 8.97233192 9.108943971 9.032341505 254452863 phoB Stress Phosphate limitation Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 7.875404044 7.88874915 8.04687037 7.642662411 8.110112853 7.942559994 8.195242424 7.665140273 7.90484305 227235681 amyA Carbon cycling Carbon degradation Starch Anaerococcus lactolyticus ATCC 51172 6.917324509 6.888179025 283810582 ABC_antibiotic_transporter Antibiotic resistance transporter Kribbella flavida DSM 17836 8.556984093 8.391515528 8.510491684 8.134362713 8.156148223 8.390267162 8.886917446 7.511194346 8.86532461 7.997623363 7.954564809 8.053966547 189435438 nrfA Nitrogen Dissimilatory N reduction Bacteroides intestinalis DSM 17393 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides intestinalis; 8.31631303 8.360327101 8.504477522 8.237285668 8.014645573 7.920336541 7.838981362 7.712842218 7.805948996 7.805081254 66801991 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 7.938631977 7.72704553 7.376821325 7.676788146 7.576886126 8.157630412 7.632465873 7.531427663 88783822 cap virulence capsule Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 8.519230425 8.443778827 8.516098313 8.522619774 8.132800602 7.993480511 8.51016165 8.495161734 8.410720763 8.469712202 8.251028134 8.118146247 160896619 iro virulence Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 9.99993035 10.08241632 9.994409032 9.488522544 9.702453199 9.766138871 10.05239967 9.988718876 10.16157495 10.11988542 9.919787114 10.13012244 192361234 CadA Metal Resistance Cadmium Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 8.872089575 9.099014105 9.201813261 9.496971543 9.334646503 9.162076701 113953173 dnaK Stress Heat shock Synechococcus sp. CC9311 8.342622992 8.311483418 8.389799006 7.89821166 7.925336044 8.064782519 7.921463284 7.840789583 8.079838944 7.763324181 8.132907418 8.075789793 213692924 fnr Stress Oxygen stress Bifidobacterium longum subsp. infantis ATCC 15697 9.196171615 9.317697458 9.051496483 8.919432653 8.965721891 8.773665541 8.467010366 8.998067574 9.003242229 9.186624851 83846568 ChrA Metal Resistance Chromium Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 9.633107199 9.572802376 9.843433014 8.625178246 8.822519342 8.985373602 9.301679082 8.540681841 9.237295889 8.975599194 9.210362958 9.132043749 186684855 pstB Stress Phosphate limitation Nostoc punctiforme PCC 73102 7.456849477 7.378217081 7.253348313 6.881527692 7.23586313 7.693762321 7.448692094 7.144552456 7.475953798 170739375 endoglucanase Carbon cycling Carbon degradation Cellulose Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 9.598235024 9.592424287 9.509337818 9.502342757 9.222964079 9.175574897 9.322674726 9.691083432 9.197768806 9.465399725 9.364230375 9.553832511 115379274 glnA Stress Nitrogen limitation Stigmatella aurantiaca DW4/3-1 8.238177478 8.224031787 8.314690967 7.497280994 7.620818869 7.871928097 7.653092403 7.163332754 8.001621559 7.483370261 7.444669364 7.677798597 84503535 ppx Phosphorus Phosphorus utilization Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 8.529764727 8.711637517 8.526858775 8.024921873 8.142230397 8.56970601 8.926065407 8.337058316 8.379499596 8.057100085 8.536337899 8.151147544 78698389 mdlD Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. BTAi1 8.925025552 9.005461914 8.811562026 8.604325036 8.703241246 8.524992139 8.587043638 9.024181476 8.555721016 8.913016425 8.891120569 8.997128926 6729166 gyrB other category gyrB Actinoplanes cyaneus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 8.54543777 8.360303384 8.349726842 7.860310553 7.785312918 7.88190958 8.097910707 7.594940573 8.266340106 7.707073891 7.104366433 7.650313472 10190796 rubisco Carbon cycling Carbon fixation Thiobacillus denitrificans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 7.956604068 7.775965644 7.336985582 7.959201416 7.735306081 7.339153751 7.707547814 7.848810724 7.867148102 7.585054469 7.425547947 227505957 clpC Stress Protein stress Corynebacterium striatum ATCC 6940 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium striatum; 9.398692433 9.47682579 9.4946806 8.661733482 8.780898458 9.123611866 9.271571714 9.127203322 9.190157849 8.923135877 8.965674105 9.08289446 91763023 pilin virulence pilin Candidatus Pelagibacter ubique HTCC1002 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales;genus:Candidatus Pelagibacter;species:Candidatus Pelagibacter ubique; 8.309747411 8.376602997 8.978595045 9.04526344 8.669728567 8.703810576 8.667213918 8.629972896 8.74241957 8.742335093 8.509500358 148555965 nagI Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.999530531 9.004665471 9.029909888 9.34174205 9.320119529 9.038539684 9.321046256 9.386113645 9.50631273 9.487350132 9.266279414 9.218940173 26992054 cytochrome Energy process Energy process Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.299002623 8.363073981 8.338042612 8.013936715 7.984819969 7.975043679 8.193444171 8.369950416 8.395964541 8.069805011 7.881574199 8.032781401 119948118 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 11.73760722 11.50615376 11.70693007 11.23171729 11.18560049 10.98424743 10.95534454 10.83590391 11.47640607 11.22027429 11.10332713 11.24079283 90106246 phoB Stress Phosphate limitation Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.590844078 8.805530952 8.414856942 9.005109264 8.895020699 8.3302342 8.867792473 8.757989558 8.666463592 8.78139549 8.69606569 167621704 alkB Organic Remediation Other Hydrocarbons Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.302600327 8.457980227 8.190259874 7.850205522 7.698635767 8.049364976 8.047878138 7.796941693 8.718782313 7.972593762 262282533 obgE Stress Radiation stress Streptococcus sp. 2_1_36FAA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 9.89318461 9.933309949 9.982514522 9.171860343 9.060364577 9.475418975 9.545567117 9.321433037 9.42852167 9.933039469 9.998632646 10.00662311 240861989 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 9.442495328 9.141565114 8.663393766 8.688685475 8.777565551 8.743896241 8.994113779 8.634949236 8.537035946 46108130 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 8.152744869 8.144685273 8.089042349 7.171192781 7.511266849 7.868671221 7.968144785 7.941854896 7.952519424 7.570829128 7.933094105 148259986 glycosyl_transferase_EPS Bioleaching EPS Acidiphilium cryptum JF-5 8.524785729 8.314205998 7.825520118 7.926337503 7.988536123 8.2266173 8.056525804 8.002881141 7.903111708 7.656410569 8.071344654 259021639 hydrogenase Energy process Energy process Rhodobacter sp. SW2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 8.414843297 8.40093294 8.594907719 7.968515018 8.056745194 8.350244058 8.438138573 7.745025445 8.562314422 7.998148058 8.139435131 8.238008606 169295113 pstB Stress Phosphate limitation Clostridium botulinum C str. Eklund 7.171391629 7.044537054 7.115628777 6.854773779 7.331919496 3282057 cytochrome_c Bioleaching Electron transport Acidithiobacillus ferrooxidans 8.76837508 8.711871138 8.146451707 8.206367008 7.777306298 7.633729299 7.871043345 7.795890422 8.172213526 164470935 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 8.515543937 8.668969947 8.894559692 8.239774574 7.894371812 7.928754212 7.319880112 7.86229923 7.95518693 7.813081381 7.776122115 8.20937629 221066331 ChrA Metal Resistance Chromium Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 10.17652093 10.02948235 9.956668721 9.432771193 9.931086935 10.00931897 10.01310439 9.795529647 9.786221052 10.1693443 9.89428696 88711180 fnr Stress Oxygen stress Flavobacteriales bacterium HTCC2170 9.461269403 9.37868461 9.495034375 8.834734204 8.77087501 8.816409772 8.86620247 8.811820059 8.580220865 8.853210396 8.780604084 9.153963121 196195016 sigma_24 Stress Sigma factors Alcanivorax sp. DG881 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 8.309523885 8.457607357 8.573757064 8.124291238 7.969114759 8.038701508 7.630994884 7.915526309 7.937308413 8.136093397 8.140687585 7.828337586 89055729 atzA Organic Remediation Herbicides related compound Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 10.30862109 10.18859702 10.018545 9.682966804 9.739775238 9.606885086 9.986417242 9.415682926 10.18900454 9.758057294 9.715710898 9.586428331 71368759 xylA Carbon cycling Carbon degradation Hemicellulose Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.933715239 8.964958545 8.674202571 8.751202051 8.93135492 8.837523041 9.389137393 9.023638693 8.936123857 8.801249799 9.007302552 8.750475752 83945261 sigma_24 Stress Sigma factors Oceanicaulis alexandrii HTCC2633 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis;species:Oceanicaulis alexandrii; 8.521249454 8.475514562 8.581429726 8.498237382 8.37948359 8.309133467 8.546015308 8.670090801 8.411999228 8.652351739 119387078 iro virulence Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.293566852 8.346438354 8.645594305 7.649123618 8.150734132 8.18637639 8.429510453 7.826533984 7.74984933 7.995711907 8.123323214 82947718 ppx Phosphorus Phosphorus utilization Magnetospirillum magneticum AMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 8.638203148 8.840273191 8.716001819 9.170795067 8.999642545 8.628727639 9.434806029 9.37864556 8.957263996 9.126937069 8.93501541 8.999844609 124259659 fnr Stress Oxygen stress Methylibium petroleiphilum PM1 8.306565279 8.269384395 8.039991806 7.924353847 8.107790738 7.865314972 8.171829262 8.365660704 8.484706682 8.190177323 8.196550612 108805976 glnA Stress Nitrogen limitation Rubrobacter xylanophilus DSM 9941 8.027640597 8.072043108 8.355348425 7.826574326 7.715513877 7.746558614 7.816866631 7.635371453 7.989900179 7.552289904 7.811158874 7.674112274 148499003 nahA Organic Remediation Aromatics Polycyclic aromatics Sphingomonas wittichii RW1 8.755334331 9.372645457 8.617099443 8.077597847 8.298697753 8.656608088 8.505020102 8.601514963 7.711435883 8.618255733 8.403967204 8.44334879 217035791 mcrA Carbon cycling Methane Methane production uncultured archaeon superkingdom:Archaea; 8.626904563 8.16909688 8.387885631 8.668235836 8.139912554 8.013642682 8.096217182 8.161370027 8.310747189 8.25549605 8.363325233 7.849646451 78363644 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Thiomicrospira crunogena XCL-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Thiomicrospira;species:Thiomicrospira crunogena; 8.378505531 8.468186472 8.520909675 8.238605914 7.902673951 7.977557223 7.78458129 7.626477217 8.01800876 7.93186721 7.785814695 8.144317803 158449062 clpC Stress Protein stress Coprococcus eutactus ATCC 27759 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Coprococcus;species:Coprococcus eutactus; 8.424652254 8.385837641 8.465078062 8.114171141 8.39328859 8.420074225 8.592983286 8.119852323 8.393857708 8.070244751 8.313924806 7.936619492 55378701 pimF Organic Remediation Aromatics Aromatic carboxylic acid Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 8.568946077 8.4330398 8.382661601 9.029115296 9.365340389 9.041991433 8.669842352 9.316005675 8.558018013 9.041833272 8.837130568 9.139416786 144898944 dsrA Sulphur sulfite reductase Magnetospirillum gryphiswaldense MSR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 9.233142215 9.036444438 9.415521399 8.368138965 8.301311545 8.187678175 8.317138442 8.197267459 8.430928813 8.581305903 8.531725299 8.48046868 227981537 ahpC Stress Oxygen stress Tsukamurella paurometabola DSM 20162 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 8.238274453 7.837440027 7.658377876 8.177519365 8.048000231 8.076925505 7.60375111 7.837792373 7.684614099 239623611 sigma_70 Stress Sigma factors Clostridiales bacterium 1_7_47_FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales; 8.995481622 8.503359873 8.482848179 8.537856275 8.272494314 8.109551811 8.269606958 8.296853513 8.533552607 8.332364004 8.241771331 8.294102212 144429 xylanase Carbon cycling Carbon degradation Hemicellulose 9.226012876 9.009550249 8.850838927 9.402792285 9.170143481 9.004747197 8.986343963 9.007422472 8.912672361 8.772388188 8.883770537 8.520311418 189341905 obgE Stress Radiation stress Chlorobium limicola DSM 245 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium limicola; 9.613426629 9.704888633 10.02441184 9.080713085 9.038270436 8.979521961 8.870986452 8.865396935 9.012963892 9.131408003 9.148727275 9.348667467 222354086 hao Nitrogen Nitrification uncultured bacterium superkingdom:Bacteria; 8.820948623 8.901293759 8.992938477 8.983387345 9.16707938 8.382762012 196195006 Arylest Organic Remediation Aromatics Other aromatics Alcanivorax sp. DG881 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 8.764812648 8.650271959 8.818592647 8.325006146 8.295518877 8.279087899 7.820041472 7.626658085 8.285407438 7.93380354 8.009656348 8.361429856 224027963 APS_AprA Sulphur adenylylsulfate reductase uncultured gamma proteobacterium 9.021811512 8.841632038 8.663787488 8.490716087 8.567128075 8.558523025 9.071374651 8.66958045 8.95498341 8.51758814 8.502189692 8.464959483 26278834 narG Nitrogen Denitrification uncultured bacterium 9.030450498 8.893082303 8.339243707 8.092878402 8.299824649 8.082706934 8.282049983 8.157712119 8.294861948 8.419836948 171465194 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9.079302005 8.993238377 9.05383137 8.511498077 8.54078704 8.415648423 8.309983746 8.367667836 8.670173305 8.492119218 8.377542772 8.67528113 254225100 pilin virulence pilin Vibrio cholerae V51 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 8.758270117 8.66591756 9.007604558 8.359356274 8.28267816 8.110329314 8.085486486 8.39936893 8.461079572 8.30879705 8.39861362 8.572843009 219563152 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 9.376626638 9.300197461 9.432430786 9.110030385 8.892784794 8.698073602 8.891776212 8.802423351 8.765907092 8.902743286 8.838937239 8.917204778 115521899 sigma_70 Stress Sigma factors Brevundimonas diminuta superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas; 8.181043199 8.122484171 7.539365366 7.389259858 7.8096766 7.81372185 7.29279521 7.558946922 7.960006689 7.961654171 151559413 grpE Stress Heat shock Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 8.464219573 8.513922542 8.31675954 7.798245838 8.181494564 8.220344119 8.67371098 7.326089792 8.326208572 7.981883404 7.912988159 8.107804092 76874183 CusA Metal Resistance Copper Pseudoalteromonas haloplanktis TAC125 8.828547501 8.858785283 9.276654835 8.290075027 8.425065572 8.133399131 8.045249642 7.854888618 8.459375206 8.114046887 8.010062897 8.422056436 237730373 nplT Carbon cycling Carbon degradation Starch Citrobacter sp. 30_2 9.306588363 9.093552135 9.374392401 8.721788364 8.585658333 8.55359297 8.717889147 8.842080693 8.737575775 8.670550912 8.537111509 8.946499632 254820595 sigma_24 Stress Sigma factors Mycobacterium intracellulare ATCC 13950 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 8.473764342 8.313075726 8.172963319 8.098343456 8.197784979 8.387009364 8.264579733 8.541034844 8.42534613 8.238531042 8.428062063 8.255550493 68164738 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.004078392 7.674570127 7.685569936 8.075108836 7.932441956 7.877176535 7.962579017 7.927108839 259503042 cspA Stress Cold shock Lactobacillus antri DSM 16041 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus antri; 8.297272667 8.353697292 8.275718829 8.198762278 8.113422739 7.952040091 7.584358684 8.160870106 8.041131601 8.097478058 7.996390167 8.066933164 160896535 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.577189034 8.583894873 8.408022362 8.319250814 8.084825488 7.998161224 8.327514657 8.411327302 8.294340935 8.217708584 8.215564508 170287495 obgE Stress Radiation stress uncultured Termite group 1 bacterium phylotype Rs-D17 superkingdom:Bacteria;phylum:Elusimicrobia;species:uncultured Termite group 1 bacterium; 8.772805756 8.806725359 9.025567833 8.369664362 8.114055816 8.062164725 7.954227872 7.556890675 8.11952421 7.934354285 7.819978723 8.350936205 120612629 katE Stress Oxygen stress Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 9.131727129 9.359415226 9.055631327 9.656177885 9.609068706 9.315067409 9.335041251 9.506642427 9.239407138 9.477763257 9.404661141 9.026063475 84497311 narH Stress Oxygen limitation Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 8.233690154 8.294499701 8.159594141 8.290723148 8.24640552 8.061683805 7.906676899 8.23539394 8.228796239 8.201404751 8.243174253 8.182466265 159130670 iro virulence Aspergillus fumigatus A1163 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 8.42789488 8.808135589 8.894684128 7.784840272 8.455597165 8.737015211 9.034294997 8.068063685 8.535701112 8.353759368 8.38164125 8.441031723 25270162 nhh Organic Remediation Aromatics Nitoaromatics Rhodococcus sp. superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.481600217 8.774507737 8.807781352 8.182705362 8.082487191 8.299402291 8.295997852 7.780161579 8.442279756 7.656678724 7.995115708 8.023372297 27350592 4HBH Organic Remediation Aromatics BTEX and related aromatics Bradyrhizobium japonicum USDA 110 9.30039858 9.042160539 9.164846271 8.851509195 8.897558871 8.728799623 9.035905825 9.042959354 8.815239293 8.994383149 9.024660407 9.003886659 209966523 pstA Stress Phosphate limitation Rhodospirillum centenum SW 8.31105817 8.482586506 8.37765676 7.990384409 8.17221713 8.442338491 8.040056226 8.152326035 8.400159757 8.172297735 8.412974014 8.091936792 214029233 rd Organic Remediation Chlorinated solvents Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8.616878564 8.566115779 8.696838184 7.953962838 8.052735355 8.312245005 8.380875028 8.196920769 8.40667236 7.893985848 8.008591144 8.184833425 25990802 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 8.521984423 8.465543269 8.41244598 8.669135927 8.682010238 8.740283249 8.393119008 8.432604413 8.04635934 8.444054126 8.069528518 124258862 alkK Organic Remediation Others Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 9.679320493 9.525406846 9.348484092 8.949577589 8.812841672 8.791479494 8.878085802 8.593514173 8.857104786 8.91111229 9.139935431 9.121364083 163790849 proV Stress Osmotic stress Carnobacterium sp. AT7 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Carnobacteriaceae;genus:Carnobacterium; 7.027288653 7.14924115 6.791677842 6.667237196 7.24153166 48428777 alkK Organic Remediation Others Collimonas fungivorans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Collimonas; 8.100440748 8.238394269 8.526466537 7.739972457 7.678873764 7.594306849 7.403234327 7.103524761 7.864622317 7.637796604 7.267558049 7.618328943 153797772 CopA Metal Resistance Copper Actinomyces odontolyticus ATCC 17982 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces odontolyticus; 8.40771583 8.274651072 8.598055017 8.049530964 8.092734262 8.306281462 7.994076835 8.220749339 8.076387058 8.003989168 7.947485532 8.265144522 29828693 amyA Carbon cycling Carbon degradation Starch Streptomyces avermitilis MA-4680 8.207271868 8.285476864 8.420824671 8.565064419 8.506811146 8.402843121 8.220757867 8.387979897 8.399471787 8.4288772 8.120169686 8.078533279 13423933 BADH Organic Remediation Aromatics Other aromatics Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 8.516706977 7.94308811 7.754945688 8.65763275 8.254320214 8.340108974 8.126771268 8.266813385 8.147517412 186472366 tfdB Organic Remediation Aromatics Chlorinated aromatics Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 9.202724814 9.349987701 9.283318179 8.653253377 8.757103519 8.808499119 8.856767238 9.289640321 9.125294393 9.059128749 8.854845685 9.096294906 21223376 exochitinase Carbon cycling Carbon degradation Chitin Streptomyces coelicolor A3(2) 9.156061637 9.299131537 8.995191533 8.700977049 8.657895184 8.612424268 9.123370397 9.193118217 8.70268176 9.23658891 9.223875312 9.110470495 116748147 pstB Stress Phosphate limitation Syntrophobacter fumaroxidans MPOB 8.555115816 8.507297492 7.983273013 7.970888329 7.923230977 7.883555089 7.720901566 8.165729472 7.990383781 7.779096561 7.934315752 76884072 atzA Organic Remediation Herbicides related compound Nitrosococcus oceani ATCC 19707 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 8.747434999 8.653578718 8.957419965 8.061411101 7.983364779 7.833407149 7.233143639 6.894678331 8.06104382 7.652489544 7.896053278 8.1410268 227954125 Tet Antibiotic resistance other Meiothermus silvanus DSM 9946 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 9.045493995 8.868068989 8.892118849 8.685277854 8.685955997 8.528501243 8.411628259 8.656251795 8.401140048 8.498835462 8.641491135 8.604243597 32308025 narG Nitrogen Denitrification uncultured bacterium 8.276658399 8.289113925 7.500683734 7.414922815 7.615771325 7.645451806 7.19922205 8.255662737 7.641824705 7.520364036 7.709470863 254442885 mannanase Carbon cycling Carbon degradation Hemicellulose Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 8.303265517 7.98396668 8.50628409 8.25354159 8.169491141 8.023217629 8.491615497 7.907927023 8.291514045 8.187494996 8.409210229 39578197 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 9.961177515 9.9336001 9.443654729 10.09674957 10.19073104 10.25884058 9.790696521 10.32666106 9.646153704 10.32115988 10.39662031 10.48424761 259171720 pstB Stress Phosphate limitation Erysipelothrix rhusiopathiae ATCC 19414 8.608554145 8.749708747 8.94724425 8.309510304 8.231846566 8.397081743 7.408852794 7.486236393 7.897397299 7.994230128 8.050364204 15606224 ppx Phosphorus Phosphorus utilization Aquifex aeolicus VF5 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Aquifex;species:Aquifex aeolicus; 8.799217594 8.978783308 8.703864891 8.057552567 8.160100579 8.303697876 8.683375696 8.326882462 8.232513387 7.813216244 8.260490609 8.058168662 118174596 mhpA Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 9.018624604 9.032323543 8.975589921 8.118680136 8.105338105 8.21747458 8.09133086 8.270842982 8.109951771 8.367266796 8.388925848 8.533383774 177842304 linB Organic Remediation Pesticides related compound Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 8.284978942 8.049262263 7.550761775 8.155612586 8.043877141 8.34345058 7.979838191 8.148645773 77975926 dmsA Organic Remediation Others Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 8.354445664 8.532911423 8.695506962 8.108361009 8.239702997 8.013612001 8.030543207 7.78963907 8.019936286 8.233297437 8.080980506 115381158 gyrB other category gyrB Spiroplasma alleghenense 9.212051233 8.833879535 9.243691135 8.442658749 8.520204954 8.274983565 7.866404505 7.954930062 8.482574313 8.288728559 8.227140696 8.491859815 167594111 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 8.292865554 8.431318464 8.314488928 8.236268116 8.504404915 8.166131353 8.401423773 8.18120527 8.569874541 8.506202206 8.171223005 8.192319622 21225631 tfdA Organic Remediation Aromatics Chlorinated aromatics Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 9.397449037 9.682411922 9.134283711 8.835224782 9.017780706 9.482389678 9.886594561 9.345865603 9.380823189 9.107532433 9.31369066 9.094163055 78067690 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.950881557 8.560690083 8.337777977 8.276481674 8.240202328 8.219856181 8.613617934 8.186814978 8.355948442 8.527142001 8.345327645 149120043 CopA Metal Resistance Copper Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 8.79173968 8.732097679 8.820598437 8.882341564 8.769396777 8.369212745 8.613389478 8.95473004 8.757432702 8.817899018 8.599656704 8.640849933 73762892 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.382000481 8.410615833 8.320853798 8.427410807 8.614926097 8.261560352 8.700745605 8.6539534 8.609049007 8.788972543 8.59762598 8.099663373 83856439 amyA Carbon cycling Carbon degradation Starch Croceibacter atlanticus HTCC2559 8.1572815 8.248972756 8.210305564 7.761704141 7.814857756 7.880544361 7.808716437 8.291143046 8.326967528 7.932273581 7.757887525 7.800390027 119898274 bphA Organic Remediation Aromatics Polycyclic aromatics Azoarcus sp. BH72 9.861268068 9.985850503 9.806826656 9.796552213 9.897759761 10.24564306 10.10342064 9.983666589 10.13457427 9.809160487 10.184119 9.873195543 227313710 ahpC Stress Oxygen stress Denitrovibrio acetiphilus DSM 12809 superkingdom:Bacteria;phylum:Deferribacteres;class:Deferribacteres;order:Deferribacterales;family:Deferribacteraceae;genus:Denitrovibrio;species:Denitrovibrio acetiphilus; 8.478798186 9.101047382 8.956915229 8.767661731 8.805721806 8.845589855 8.776849676 9.103337056 8.726428273 9.183574223 8.89679693 8.676069267 69278799 CODH Carbon cycling Carbon fixation Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 8.728351007 8.782354222 8.586376346 8.421054999 8.230264049 7.743120403 8.055945015 8.070912249 8.354020288 8.265692254 8.215226669 15822560 dnaK Stress Heat shock Fibrobacter succinogenes S85 8.459730605 8.382147825 8.613981638 7.999902627 8.043071847 8.003143355 7.879956123 7.918536081 8.329954936 7.596573368 8.34689152 7.861368524 187927761 pilin virulence pilin Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 9.461426039 9.026152809 9.258499343 8.766797457 9.053103245 9.129199838 9.468217855 8.777390385 9.599947907 9.098764634 9.282297292 9.353605684 239804992 katE Stress Oxygen stress Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 10.48736072 10.38320945 10.41972328 9.6513891 9.700066 9.464936034 10.06196249 9.477477636 9.998148617 9.671182009 9.648950378 9.652190503 38233110 narJ Stress Oxygen limitation Corynebacterium diphtheriae NCTC 13129 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium diphtheriae; 9.515969446 9.704068312 9.572792923 8.676916422 9.586994533 9.641858765 9.207788994 9.562893332 9.510644854 9.584424002 9.806846992 150259884 clpC Stress Protein stress Victivallis vadensis ATCC BAA-548 superkingdom:Bacteria;phylum:Lentisphaerae;family:Victivallaceae;genus:Victivallis;species:Victivallis vadensis; 8.556498362 8.643679023 8.364558367 7.870118612 7.761350473 7.720785056 7.583001218 7.480007593 7.523021054 7.673478369 7.498201789 8.117679223 197210195 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.758276296 8.619435158 8.995288705 8.704459134 8.54407882 8.237774272 8.072039275 8.095104497 145574027 exaA Organic Remediation Chlorinated solvents Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 8.744520658 8.591018091 8.442889649 7.994371344 8.054150727 7.865045929 7.998021596 7.972042492 8.00877636 8.02314777 8.088726398 8.196389621 145226753 phtA Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. DK17 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7.792613004 7.64427271 7.72998132 7.405114317 7.928920377 7.805917306 7.553296268 7.816854669 7.626788331 117674730 dmsA Organic Remediation Others Yersinia pseudotuberculosis IP 31758 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia pseudotuberculosis; 8.28374336 8.257077044 8.511670268 7.655961676 7.761006032 7.988505964 8.302927424 7.329662295 8.38373164 7.565862289 7.32395188 7.80376551 89070275 fnr Stress Oxygen stress Oceanicola granulosus HTCC2516 9.187901088 8.494185876 8.475624934 9.406817557 9.306849061 9.024076239 9.313032591 9.173057699 8.652554066 8.965367954 8.903583541 8.897406552 84517124 Catechol Organic Remediation Aromatics Other aromatics Loktanella vestfoldensis SKA53 8.915051129 9.041160765 8.633150462 8.747147632 8.728341545 8.723811572 8.788232503 8.630341462 146191339 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 10.20064965 10.60894823 10.38947048 9.661717263 10.23457411 10.37366953 10.8423902 9.814815651 10.81576968 9.939458428 9.85036273 9.892014912 242129793 amyA Carbon cycling Carbon degradation Starch Dickeya dadantii Ech703 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 8.452100061 7.992977638 8.320391909 8.042986924 8.002005823 8.025417991 7.817904842 8.172772425 8.209760557 8.132030039 8.345803886 8.14525585 121583065 CopA Metal Resistance Copper Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8.184517981 8.413625437 8.134934292 8.210903669 8.182422919 8.067899846 8.175655676 8.671678731 8.408311497 8.563633505 8.225084963 8.370133428 88806144 aclB Carbon cycling Carbon fixation Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 7.473149689 7.31124459 7.488580832 7.328342534 7.017282535 7.711673141 7.469247566 7.408039569 7.156107274 144416 endoglucanase Carbon cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas; 8.785142046 8.349766931 8.752590122 8.575239138 8.890796969 8.921474525 8.776943006 8.823321335 9.010046768 8.811359555 9.284541589 8.771810251 169004730 atzC Organic Remediation Herbicides related compound Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 9.062558041 9.273833601 9.105262315 8.494956693 9.079584341 9.380521879 8.899454997 9.438317201 8.773519252 8.902948256 9.19290194 91975984 CadA Metal Resistance Cadmium Rhodopseudomonas palustris BisB5 8.132825452 8.455279223 7.740272861 7.836052384 7.970623058 7.974984703 7.77129275 8.268843457 7.976607103 8.053186114 7.820108335 256374862 hly virulence hemolysin Actinosynnema mirum DSM 43827 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinosynnemataceae;genus:Actinosynnema;species:Actinosynnema mirum; 9.166617371 8.65522802 8.941847575 8.397615295 8.502370844 8.944887273 8.529365081 9.105011426 8.664385366 8.537995681 8.663069883 260418643 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 8.858922813 8.995104513 8.978173751 8.125646821 8.534055431 8.622992601 7.985772329 8.556601892 8.268774631 8.205027904 8.087616657 156719686 mer Metal Resistance Mercury Hydrogenobaculum sp. Y04AAS1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenobaculum; 9.064793428 8.947632907 8.510445371 8.617157775 8.425650533 8.219321083 8.281835018 8.351060096 8.36135423 8.169460168 8.673456847 114328828 ureC Nitrogen Ammonification Granulibacter bethesdensis CGDNIH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 8.170054409 8.081854595 8.100182448 7.439429223 7.594912821 7.385027822 7.492091578 7.64051398 7.416718497 7.513408602 7.720495832 54015553 scnABC Organic Remediation Others Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 8.159395323 8.178061823 8.349287826 8.68114373 8.649936 8.342940372 8.509158942 8.834775242 8.345150798 8.756008441 8.472055478 8.092354985 159139828 proV Stress Osmotic stress Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.473145678 8.166596024 8.404310703 8.052103513 8.001910051 7.465471281 7.738196666 7.685236716 8.005784595 7.825868937 7.914448884 7.831221953 1373328 dnaK Stress Heat shock 8.537840782 8.437461985 8.338358362 8.253816104 8.155634385 7.897881712 7.848209163 8.273434541 8.216431466 8.151840453 8.028417218 8.260328444 139003567 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 9.310560387 9.512656781 9.323751721 8.982137982 9.216391977 9.25385296 9.370164219 9.70644424 9.336630925 10.04442792 9.794253606 9.46478207 167751919 atzA Organic Remediation Herbicides related compound Alistipes putredinis DSM 17216 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes;species:Alistipes putredinis; 8.78692817 8.652971341 8.715920678 8.681754817 8.543267139 8.14980258 7.811222262 7.699597179 8.300516934 8.369593628 8.371820286 7.998767853 167574422 glnA Stress Nitrogen limitation Burkholderia oklahomensis C6786 8.615383833 8.259938754 8.389545981 8.776538471 8.440368246 8.392157345 8.847410904 8.685871233 8.386831155 8.425344026 8.456736604 8.450718244 227986995 hly virulence hemolysin Meiothermus silvanus DSM 9946 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 9.393426934 9.301672443 9.282700657 8.537196963 8.249702848 8.478957119 8.329432444 8.290710045 8.425869311 8.371979804 8.401443283 8.461341607 86285059 pnbA Organic Remediation Aromatics Nitoaromatics Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.965834244 9.19431034 9.088052784 8.433423543 8.422552611 8.459053472 8.432936253 8.370296226 8.930808717 56478065 ChrA Metal Resistance Chromium Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 8.188748572 8.200170523 8.275340657 7.543146068 6.899425716 7.94213344 8.091708223 6.81517012 7.562933555 7.948016451 8.172732366 91691075 linB Organic Remediation Pesticides related compound Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.764276261 8.312545238 9.123442808 9.034120298 9.159294198 8.831436923 9.438163204 8.584163611 9.1090643 9.145775174 9.227318935 85059650 SMR_antibiotics Antibiotic resistance transporter Sodalis glossinidius str. 'morsitans' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Sodalis;species:Sodalis glossinidius; 8.825541563 8.542127394 8.496660203 8.173615445 8.089795147 8.085783907 8.360894478 8.1096497 8.567067213 8.185820978 8.155710949 8.094668116 117998472 TehB Metal Resistance Tellurium Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 9.254192463 9.396547035 8.897062317 9.235439972 9.575439123 9.538766845 9.197183436 9.886353788 9.196289278 9.568561135 9.355530793 9.121710508 159044821 dmsA Organic Remediation Others Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 8.52141459 8.734443873 8.262205691 8.551926458 8.339951758 8.258392122 8.588868576 8.459905025 8.288035102 8.394206848 8.011688187 29465998 norB Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.658115993 8.003840469 8.460531191 8.237296215 8.119850583 7.868514358 7.575121043 7.960827245 7.741289669 8.131401141 7.947052724 8.011343293 253320609 ureC Nitrogen Ammonification Mycobacterium tuberculosis KZN 1435 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 9.366793542 9.309363698 9.300531399 9.132104876 9.018927907 9.020058897 9.011134928 8.747327356 9.178090717 8.98501363 9.109285007 9.083974018 121604590 sigma_24 Stress Sigma factors Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8.149214751 8.318109584 8.249144008 7.978975883 8.075688149 7.533722499 7.657129977 7.790311894 8.289999977 7.863732419 7.733961704 7.767925984 1437475 Catechol Organic Remediation Aromatics Other aromatics Ralstonia pickettii 9.350651521 9.473502437 9.538645574 8.626752583 8.636609042 8.920175848 9.045696636 9.018466 8.904782448 9.247828641 9.188064899 1652157 mer Metal Resistance Mercury Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 8.384401835 8.685967289 8.88793689 8.145448584 7.803010473 8.160733879 7.636319539 7.602730216 8.043014528 7.644474542 7.621406999 8.263957439 28853520 Mex Antibiotic resistance transporter Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 8.180954814 8.193393861 8.078623404 8.062431017 7.927142172 7.890797176 8.120051562 8.302529041 8.051356953 8.028119682 8.101546962 254431917 amyA Carbon cycling Carbon degradation Starch Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 8.559650079 8.49977935 8.332422962 8.498372673 8.142197216 8.202842137 8.51550204 8.67824214 8.334325091 8.782341482 222481420 pstC Stress Phosphate limitation Halorubrum lacusprofundi ATCC 49239 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 8.941085455 8.948221447 8.431980902 8.295175267 8.48285488 8.026803797 7.946712136 8.467180016 8.385496743 8.60461045 8.45149613 8.738984166 78515478 pcc Carbon cycling Carbon fixation Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.658924893 8.760080714 8.912698058 9.041984461 9.007022746 8.747913753 8.969761836 8.935912288 8.759957509 8.957752545 8.714503347 8.466494446 26986924 cytochrome Energy process Energy process Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 9.386390445 9.336693413 9.212167835 9.458702091 9.627015494 9.691238268 9.232031179 9.575602823 9.148727854 9.399133853 9.774176972 9.495402832 255264519 ppk Phosphorus Phosphorus utilization Thalassiobium sp. R2A62 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Thalassobium; 8.131340083 8.020311012 8.118759043 7.986642183 7.917574698 8.028431256 8.219374524 8.086021721 8.077894095 8.024298281 7.992804759 133737699 CusF Metal Resistance Copper Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 7.723133318 7.576150534 7.592716072 7.59647101 7.998774391 7.953961186 7.538327865 7.549417748 7.833886023 119855025 Catechol Organic Remediation Aromatics Other aromatics Mycobacterium sp. KMS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.377634426 8.205739745 8.334572953 8.548002896 8.275944743 7.947327111 8.357764267 8.249900952 8.617527897 8.544537792 8.533441098 8.0028659 111918708 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.217243383 8.373526517 8.526579736 8.314467615 8.438119238 7.864007336 8.489378179 8.29481355 8.044759264 8.266167172 7.824562765 160363293 iro virulence Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 9.82063886 9.868690602 9.628186671 9.527616977 9.515663901 9.402301445 9.662073149 9.482028113 9.598547282 9.408513395 9.555909983 9.385400554 146401081 glycosyl_transferase_EPS Bioleaching EPS Acidiphilium cryptum JF-5 8.163294728 7.936746964 7.998135362 7.973115921 7.999516931 7.802101751 7.890499774 8.423372123 8.202169323 8.287192694 8.46889599 8.431106147 218885652 atzA Organic Remediation Herbicides related compound Desulfovibrio vulgaris str. 'Miyazaki F' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 9.030036111 8.996461017 8.284772889 8.378222173 8.956631398 9.165193695 9.216921362 9.246110091 8.835761672 9.054535794 8.962169314 1652920 pstC Stress Phosphate limitation Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 8.611935334 8.462462624 8.955511258 8.050495659 7.861965125 7.917720939 7.788960672 7.654246401 7.750377865 7.830633323 8.169343603 16081914 heat_shock_protein Bioleaching other category Thermoplasma acidophilum DSM 1728 7.973309504 8.230111219 7.249112478 7.06424158 6.705853385 7.459752444 21220201 cymC Organic Remediation Aromatics Other aromatics Streptomyces coelicolor A3(2) 8.721629057 8.697136698 8.590394304 8.54352532 8.386681501 8.408079292 8.638427226 8.809158056 8.58801163 8.795093017 8.550665075 8.494899145 114226623 fnr Stress Oxygen stress Alkalilimnicola ehrlichii MLHE-1 9.153962965 9.257641556 9.157463455 8.743344448 8.520828063 8.549361659 8.186564812 8.319103356 8.207506568 8.323145392 8.710608889 85706071 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.677814898 8.584855153 8.444798262 7.924075584 8.018620688 8.287039128 8.125997971 8.166027762 8.25728402 8.425555598 8.121056343 8.192228783 53722064 czcC Metal Resistance "Cadmium,Cobalt,Zinc" Burkholderia pseudomallei K96243 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 9.875194506 9.839822173 9.850649242 9.517532021 9.521147731 9.319852637 9.517003772 9.77771036 9.268671174 9.519782291 9.461409857 9.711159566 111151328 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 8.244056811 8.271503021 8.432977541 7.815661754 7.808429967 7.762117428 7.491353459 7.656336196 8.085724002 8.147811387 7.818990644 7.92063817 99079220 nirK Nitrogen Denitrification Bosea sp. PD 23 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bosea; 8.08496619 7.863203116 7.671027034 7.804225929 7.945399589 8.129748774 8.190550091 8.140678925 8.418595122 8.256692102 8.393555721 104781693 nagI Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 9.782095829 9.169142038 9.517635245 9.342410499 9.274039064 9.337266984 9.547614317 9.334670562 9.539460683 9.334331974 9.712382721 9.562413506 223937280 acetylglucosaminidase Carbon cycling Carbon degradation Chitin bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 8.129736126 7.839282617 7.820047047 7.795345081 7.764834844 7.703266961 7.975376861 8.073107531 7.960010282 7.803796795 7.748657511 78093518 narG Nitrogen Denitrification uncultured bacterium 9.399204051 9.419449439 9.500980221 9.092349084 8.929729869 8.692553326 9.228173496 9.160757178 9.156202204 9.178196657 9.260711389 9.261861539 224283222 cda Carbon cycling Carbon degradation Starch Bifidobacterium bifidum NCIMB 41171 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium bifidum; 8.758840707 9.020344212 8.420182523 8.306540884 8.765732664 8.996665765 145217453 fnr Stress Oxygen stress Mycobacterium gilvum PYR-GCK 8.294652465 8.16332881 7.944289294 8.234351327 7.871691561 8.086292734 8.57069404 8.149614635 8.393146274 8.361020416 8.4051587 229329789 narH Stress Oxygen limitation Geobacillus sp. Y412MC52 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 9.406564999 9.061983958 9.243078569 8.096925008 8.07690161 8.180858846 8.650668253 8.209734788 8.620371535 8.466731757 8.594083895 8.583139944 119958186 nahA Organic Remediation Aromatics Polycyclic aromatics Mycobacterium vanbaalenii PYR-1 8.682169265 8.460625568 8.546921977 8.202428168 7.823383214 8.050702118 7.974443557 8.036067029 8.205871037 7.806780083 8.078024567 7.999860342 114543919 rubisco Carbon cycling Carbon fixation Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.143850293 8.290286737 7.882187034 7.916785026 8.081014035 8.112136892 7.922869413 8.360916852 7.838344739 7.964796841 8.081274983 86158699 cytochrome Energy process Energy process Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 8.80928469 9.010676966 9.196737641 8.828237719 8.951019126 9.02341244 9.114437872 9.40556277 8.88675683 9.450148883 9.397413858 9.332518934 169655859 hmgA Organic Remediation Aromatics Aromatic carboxylic acid uncultured soil bacterium superkingdom:Bacteria; 8.760315378 9.015072685 8.794241476 9.107308894 9.254330133 9.02780553 206686009 glnA Stress Nitrogen limitation Rhodobacterales bacterium Y4I 9.944343941 9.916742134 10.25591847 9.524840215 9.610449551 9.415878414 9.756314378 9.861717814 9.984179747 9.88592206 9.769262654 9.818178929 227311350 pstB Stress Phosphate limitation Denitrovibrio acetiphilus DSM 12809 6.911025266 7.011132538 7.097853711 209523453 arcB Stress Oxygen limitation Arthrospira maxima CS-328 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira maxima; 8.442540915 8.576338498 8.744650958 7.909464044 8.26518808 8.326774172 8.419957622 8.126051246 8.035891163 8.066089404 8.270451253 8.374265313 195940579 pulA Carbon cycling Carbon degradation Starch Escherichia coli O157:H7 str. EC4024 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 9.922482563 9.6628192 9.642012691 9.012274226 9.088884803 8.617170745 8.583994643 9.160169466 9.016908302 9.238197027 9.108695136 251807218 grpE Stress Heat shock Gallionella ferruginea ES-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Gallionella;species:Gallionella capsiferriformans; 8.250138926 8.224665639 7.820918928 8.050268883 8.630211528 7.955702717 7.603822418 7.714383261 7.916391741 149919759 sigma_24 Stress Sigma factors Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 8.762028964 9.022930879 8.828035699 7.876502311 8.061665206 8.306814802 8.794892446 8.147293282 8.815818316 8.308180511 8.146952215 8.11105235 89143264 fcbB Organic Remediation Aromatics Chlorinated aromatics Arthrobacter sp. FG1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 9.011314925 9.118396785 9.218623271 8.596309488 8.500051782 8.693862272 8.507232599 8.191726051 8.67539521 8.47173415 8.554629883 8.775943992 194292617 pcc Carbon cycling Carbon fixation Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 10.13919591 10.08845729 9.986515975 9.504374056 9.543517935 9.484326413 9.867001473 9.381722694 10.1702656 9.681918019 9.685792901 9.64951363 258560520 inv virulence invasion Corynebacterium genitalium ATCC 33030 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium genitalium; 9.078547894 8.547602045 8.720144505 8.813548197 8.522632413 70734133 ureC Nitrogen Ammonification Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.3565525 8.289464055 8.68473011 7.772262062 7.958932626 8.060953794 7.711887156 7.77065467 8.086936503 7.859063351 7.985005126 8.225240918 88783395 silP Metal Resistance Silver Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 9.281349659 9.266798987 9.47085927 8.806826969 8.657540514 8.618440192 8.37935869 8.602288121 8.666786307 8.627505878 8.678747224 8.579635962 209499494 MFS_antibiotic Antibiotic resistance transporter Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 9.296317101 9.684727032 9.189680042 9.010758017 9.202413463 9.433294457 9.605473603 9.882477131 9.494604851 9.729156723 9.820093012 9.721356661 119497757 nagG Organic Remediation Aromatics Aromatic carboxylic acid Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 8.140507238 8.144832336 8.384321175 8.227357886 8.089267016 7.875664938 7.787860134 8.190169739 8.132880657 8.17409597 8.051356448 7.703844749 94471337 narG Nitrogen Denitrification uncultured bacterium 9.282018673 9.308653579 9.279299322 8.721256844 8.456533574 8.81624644 8.784839188 8.666906943 8.732574315 8.649736466 8.670597398 8.978860565 145556289 pcc Carbon cycling Carbon fixation Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 8.659027674 8.63133223 8.835187956 7.966544586 8.087897554 7.939513119 7.959052535 7.846937035 8.000401235 7.936034487 7.689904539 8.30940629 160898109 proV Stress Osmotic stress Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 9.572624898 9.485083604 9.58986175 8.804019505 8.924617052 9.248806191 9.507282552 8.938908882 9.255822376 8.970149798 9.011205738 9.366817562 89084660 ChrA Metal Resistance Chromium Bacillus sp. NRRL B-14911 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 8.954416394 8.901528416 8.8346476 8.324195069 8.413200657 8.217958565 7.70496928 7.799484128 7.913772697 7.969641112 8.358087556 255010727 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Bacteroides fragilis 3_1_12 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 8.074351245 8.218390658 8.210344808 7.513118898 7.704934773 7.41266786 7.564294878 7.385267195 8.026736258 7.497607899 7.42945521 7.504599723 223041033 SMR_antibiotics Antibiotic resistance transporter Campylobacter rectus RM3267 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter rectus; 9.150351942 8.938129086 8.986463478 8.458202294 8.406177926 8.287716726 8.646813989 8.415527199 8.560336511 8.627604376 8.454675177 218245218 sigma_24 Stress Sigma factors Cyanothece sp. PCC 8801 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.169607401 7.918164109 7.302543072 7.029146829 7.868756233 7.90025414 7.421001169 7.338265 7.451234635 254394474 pstC Stress Phosphate limitation Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 8.420694963 8.236427922 8.077815174 8.526937595 8.046645242 7.823745952 8.140867551 8.06230248 7.915987828 7.815015063 7.763178527 110831557 bbs Organic Remediation Aromatics BTEX and related aromatics Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 9.131868046 8.746941817 8.61522394 8.450289805 8.605694666 8.738223508 8.682063963 8.481099793 8.401781414 8.213445459 8.215466362 8.036730109 126718511 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.693538955 8.345050852 8.787773542 8.114614457 8.056564638 8.067241934 7.373757912 7.502084981 7.826420592 8.053792901 8.235701444 219557779 linB Organic Remediation Pesticides related compound Mycobacterium tuberculosis T17 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 8.407381038 8.246876619 8.247697747 8.387887886 8.215727721 7.982519509 8.075221244 8.292083236 8.261511855 7.932701182 7.927171138 7.826052732 256583866 clpC Stress Protein stress Cryptobacterium curtum DSM 15641 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Cryptobacterium;species:Cryptobacterium curtum; 8.792705217 8.906809743 8.938789298 8.639820072 8.739581854 8.661402417 8.85983888 9.238636589 8.877967193 9.036651805 8.972023145 9.049991968 118706460 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.812968533 8.581680176 8.857546863 8.634342346 8.523262405 8.408010175 8.26023264 8.603871847 8.212226602 8.340935668 8.615771861 8.617245572 148830818 linC Organic Remediation Pesticides related compound Erythrobacter sp. SD-21 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 9.512651566 9.636704466 9.663960196 8.824450875 8.662928734 9.03095571 8.885412584 8.383504295 8.959039204 8.876121463 8.92963351 9.016379421 188572651 mcrA Carbon cycling Methane Methane production uncultured archaeon superkingdom:Archaea; 7.603689997 7.497740284 7.439152952 6.983610559 7.445515231 7.588920519 7.547613564 7.500295684 7.655182844 148258804 MFS_antibiotic Antibiotic resistance transporter Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.642907118 8.792897448 8.555545093 8.364814721 8.274873433 8.37140027 8.901589514 8.549444595 8.735936511 8.828314131 9.135377842 9.075334477 157363044 pcc Carbon cycling Carbon fixation Thermotoga lettingae TMO superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga;species:Thermotoga lettingae; 8.524103779 8.814569975 8.780560105 8.237972091 8.047288012 8.257668269 7.810750162 7.799540364 8.125530192 8.063302049 7.810707939 8.306785435 254474379 sox Sulphur Sulphur oxidation Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 9.697396192 9.618627951 9.492125945 9.034100215 8.775992565 9.086015988 9.451061397 8.937899713 9.048269004 8.966312763 8.985288775 9.02336378 229488416 vdh Carbon cycling Carbon degradation Others Rhodococcus erythropolis SK121 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 8.307675815 8.258810812 8.332372265 7.572579555 7.857065369 8.077290024 7.105115593 7.5217789 7.238985099 7.435903822 145238192 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8.204674346 8.422286133 7.525606479 7.424108104 7.640557074 7.340261912 7.090854292 7.606201387 7.284788477 7.484427293 7.837346762 75677240 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Nitrobacter winogradskyi Nb-255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 9.107205895 9.05987745 8.947716346 8.651552444 8.668899319 8.604800846 8.724019824 8.895140807 8.607460722 8.777905904 8.682472033 8.830153964 iegcoxL63 CODH Carbon cycling Carbon fixation 8.619376672 8.649419863 8.499997571 8.614711227 8.46685978 8.189604037 8.372237296 8.382703493 8.387439672 8.547360183 8.519262996 8.407162481 156451631 nitA Organic Remediation Aromatics Other aromatics Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 8.811010602 9.029951259 8.743474037 7.96244214 8.043360049 8.066933935 8.652805911 8.077382982 8.903669639 8.185239979 7.872876597 8.189961955 90104681 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.756617045 10.1649596 10.08946172 9.766080384 9.515850853 121553659 sigma_70 Stress Sigma factors Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 9.487232103 9.348079115 9.366477754 8.925970918 8.969959775 9.016171244 9.620395246 9.11087273 9.760310734 9.090030808 8.934232626 9.276644347 58616389 TerC Metal Resistance Tellurium Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 7.194931661 7.692535435 7.243086401 7.337047659 7.638347678 7.574525865 7.047154895 120606513 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 8.309446157 8.218272219 8.474332541 8.316607633 8.113793423 8.397343592 8.500035835 8.301234711 8.357867254 8.507113331 8.26351177 88863485 phtA Organic Remediation Aromatics Aromatic carboxylic acid Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 9.470947312 9.375037999 9.47215217 9.075074947 9.037076525 8.714997385 8.855933493 8.982151819 8.984048015 9.071379902 8.909228888 9.144734954 150376296 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 8.765521218 8.711604134 9.145172814 8.814425773 9.075670344 8.9202941 8.992148954 9.099331467 9.00520171 9.339362887 9.303628282 8.932355172 160915744 ChrA Metal Resistance Chromium Eubacterium dolichum DSM 3991 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichi;order:Erysipelotrichales;family:Erysipelotrichaceae;species:Eubacterium dolichum; 8.054095463 8.260820995 8.218446239 7.664282346 7.79134279 8.036285209 8.125407541 7.871352821 8.312981581 7.798584522 7.944400635 7.761088957 256823636 oxyR Stress Oxygen stress Kangiella koreensis DSM 16069 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Kangiella;species:Kangiella koreensis; 8.391848949 8.221555473 7.282644858 7.565866411 7.802900018 8.013300176 7.057297847 7.667493724 7.591168288 7.597863171 198271354 pcc Carbon cycling Carbon fixation Bacteroides plebeius DSM 17135 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides plebeius; 9.022390517 8.895478765 9.069260319 8.716648077 8.712771027 8.447322958 8.470332861 8.320685626 8.834829848 8.739983508 8.765544336 8.533182923 72122397 silC Metal Resistance Silver Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.846378848 8.706439627 8.537658249 8.560810415 8.321540734 8.165806735 8.297306161 8.181221064 8.542714541 8.510682934 8.135990916 8.123859464 59893466 nosZ Nitrogen Denitrification uncultured forest soil bacterium superkingdom:Bacteria; 8.426875642 8.339400759 7.846490659 8.295282912 8.639298804 7.42416409 7.736903076 8.226590922 254504636 AceB Carbon cycling Carbon degradation others Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 8.60710467 8.489943353 8.044117824 8.271610296 8.092423348 7.919291562 8.042027212 8.192561807 7.898559166 8.090227139 159045063 oxyR Stress Oxygen stress Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 8.581218508 8.717157119 8.859522964 8.385391314 8.111048086 8.18367161 8.768597782 8.124092792 8.971986108 8.08872753 7.941417013 8.097308701 158329927 tftH Organic Remediation Aromatics Chlorinated aromatics Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 8.5261404 8.64139607 8.742743515 8.616052918 8.524228142 8.173598531 8.390226548 8.611332413 8.461935939 8.145872122 8.530733522 88643481 dsrB Sulphur sulfite reductase uncultured prokaryote 9.208060884 8.98746283 9.087553915 8.447545 8.384577044 8.19949266 7.860178606 8.222429023 8.055277357 8.397590791 156190103 CopA Metal Resistance Copper Methylobacterium chloromethanicum CM4 8.989936081 9.200105435 8.875013971 8.59645827 8.961100692 9.085823339 9.442540845 8.501097353 9.30731063 8.702021065 8.826567745 8.693749004 71158072 ChrA Metal Resistance Chromium Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 9.260689028 9.346956963 9.276921143 8.839037866 8.77492349 8.553597373 8.488361002 8.174099083 8.516327501 8.470314244 8.679422915 8.901198443 20904457 CODH Carbon cycling Carbon fixation Methanosarcina mazei Go1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina mazei; 9.667366744 9.300987679 9.265257025 9.462706652 9.467763152 9.150734374 9.228238252 9.271961487 9.04207329 9.179348231 8.948813873 9.066088044 269923620 AceA Carbon cycling Carbon degradation others Brevundimonas subvibrioides ATCC 15264 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas;species:Brevundimonas subvibrioides; 8.277160367 8.075485435 8.252676605 8.479709707 8.263351101 8.165091229 8.687188532 8.414634532 8.517554791 8.46645016 8.481225032 154157184 alkH Organic Remediation Other Hydrocarbons Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 8.115537951 8.142894186 7.831368398 7.963295706 8.093390089 8.351041305 8.179314429 7.913309783 8.149287142 170781052 pcc Carbon cycling Carbon fixation Clavibacter michiganensis subsp. sepedonicus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 9.693524665 9.637465119 9.559927471 9.119311631 8.991017136 8.959847632 9.319364113 9.039563268 9.515792424 8.953818274 8.853628825 9.034499123 3184044 bphA Organic Remediation Aromatics Polycyclic aromatics Ralstonia sp. JS705 9.022216612 8.870524626 9.133023382 8.580152729 8.666568799 8.601345915 8.737886024 8.685941204 8.88952067 8.605037578 8.577477015 8.583708209 187720077 ArsC Metal Resistance Arsenic Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.622201779 7.623872222 7.413532695 6.943585122 7.424371047 7.915713495 7.517320035 7.468214098 7.580698674 146343093 fnr Stress Oxygen stress Bradyrhizobium sp. ORS278 9.348429223 9.121399641 9.287225473 8.624537668 8.837627 8.452503673 8.344929991 8.265853344 8.530227472 8.527371115 8.703682071 254391487 amyA Carbon cycling Carbon degradation Starch Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 8.884817387 8.810622633 8.707510049 8.523258887 8.470584598 8.747885272 8.597825555 8.622477237 8.563669892 8.692300198 8.465203076 27351087 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.266412873 8.471247265 8.448648724 8.226292725 8.339480122 8.095117108 7.929719863 8.325012775 8.275622644 8.083498306 8.194657543 8.352105133 251776491 cytochrome Energy process Energy process Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 9.680031561 9.961637583 9.561897043 9.509967444 9.64846193 9.803760398 10.15720706 9.627696563 9.803741052 9.706633339 9.818194239 9.585319826 88927372 gyrB other category gyrB Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 8.492892297 8.462479228 8.696445202 8.432643486 8.548860601 8.542656908 8.27823614 8.781965048 8.317304419 8.510363876 8.534180853 8.45308626 89044975 ara Carbon cycling Carbon degradation Hemicellulose Oceanicola granulosus HTCC2516 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 8.84989481 8.654150399 8.951907191 8.951645951 9.055673512 8.872464922 8.902022282 9.4713247 8.903962375 9.412249286 9.011750075 9.331635651 2306819 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Alcaligenes sp. SH-69 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes; 8.615040234 7.957973756 8.680675969 8.613845141 8.47367225 8.355573658 8.453504085 8.410682198 8.352796474 8.295946701 8.089422594 150395819 exaA Organic Remediation Chlorinated solvents Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 8.406940326 8.554089322 8.449823058 7.99992675 8.37954942 8.488862628 8.674876369 7.72733708 8.623170974 8.084020264 8.016894019 8.079362778 150390568 proV Stress Osmotic stress Alkaliphilus metalliredigens QYMF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus metalliredigens; 8.381485164 8.049174603 8.28880302 7.841936907 7.73983456 7.423865419 7.511454569 7.908196543 91801259 sigma_70 Stress Sigma factors Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 9.435021495 9.275635977 9.291497942 9.147986424 8.345506917 8.84705324 9.034032195 9.161170832 9.077059549 9.305697763 9.433138858 9.35002035 91693268 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.65802685 8.873900867 9.00908363 8.270607618 8.150042436 8.092561321 8.025934119 7.988100408 8.211662415 7.947932141 7.741008263 8.291074561 116692173 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia cenocepacia HI2424 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 9.124195343 9.374330015 9.203396964 9.867995412 9.718330046 9.299149351 9.677303869 9.606215975 9.188270032 9.493621887 9.155809394 8.939003701 126173616 phoB Stress Phosphate limitation Shewanella baltica OS155 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 8.292351616 8.40757465 7.718970746 7.919761257 7.594380926 7.113923657 6.95313925 7.645340387 139478585 mer Metal Resistance Mercury uncultured soil bacterium superkingdom:Bacteria; 8.259060532 8.420188622 7.951044068 8.112095366 8.059995173 7.600000116 7.919061546 7.851494831 7.601384114 7.933003228 7.855740351 196110780 SMR_antibiotics Antibiotic resistance transporter Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 9.054415432 8.93598011 8.917220424 7.762654882 7.8888804 8.222770559 8.677438533 8.296610107 8.601451169 8.018634705 8.087037658 8.057138762 69154474 ZntA Metal Resistance Zinc Paracoccus denitrificans PD1222 8.295244069 8.32799578 8.425862663 8.114127462 7.999570202 8.037230779 7.904442789 8.185016217 8.361913306 8.247326288 8.041915993 8.068658313 160896992 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 9.048900498 8.861891824 8.843514433 8.531205729 8.660271665 8.853421635 8.976458072 8.751989005 8.909441681 8.989414434 9.050955031 8.830235541 182678250 hrcA Stress Heat shock Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 8.66185332 8.692520591 8.53175697 8.687257084 8.658392051 8.315575802 8.392866353 8.564032093 8.588959121 8.693121633 8.769912783 8.636106715 17428662 ahpC Stress Oxygen stress Ralstonia solanacearum GMI1000 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 8.592807889 8.675519875 8.434331729 8.790265521 8.720354459 8.431997952 8.831450109 8.767278474 8.713255149 8.720760662 8.739381438 8.581283977 68345718 iro virulence Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 9.281614378 9.332824358 9.13752742 8.827416512 8.760485611 8.544513157 8.721989519 8.895778621 8.517304646 8.70360046 8.472697812 8.770226161 207742414 pilin virulence pilin Ralstonia solanacearum IPO1609 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 8.186399205 7.910137355 8.075598149 7.933827902 7.921897448 7.830165648 7.991220333 7.844094231 8.215511071 7.810398789 7.847203657 7.876320774 198036178 bphA Organic Remediation Aromatics Polycyclic aromatics Burkholderia cenocepacia J2315 9.621032315 9.363322124 9.282432044 8.973886889 8.528915887 8.42960862 167360981 Tet Antibiotic resistance other Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.766749255 8.738452607 9.021213504 8.219516851 8.213775386 8.16169369 8.277322269 8.09868493 8.465862723 8.281294874 8.256390312 8.212385312 239911316 pstB Stress Phosphate limitation Thermococcus gammatolerans EJ3 8.426495369 8.198090258 8.678845284 8.02854971 7.948062481 8.342311824 8.691545519 7.595330083 8.831406055 7.866189054 7.788576057 7.858014064 146327856 phenol_oxidase Carbon cycling Carbon degradation Lignin Lentinus tigrinus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Lentinaceae;genus:Lentinus; 8.737609254 8.847384149 8.688184677 8.375473059 8.09799224 8.052982287 7.801537977 7.623204228 7.946512215 8.036118643 8.144487414 196186477 sigma_24 Stress Sigma factors Brevundimonas sp. BAL3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas; 8.038849462 7.997430102 7.454879497 7.705434218 7.736567457 7.73692452 7.740516843 7.821198313 7.79673491 7.543855566 7.395384722 62149134 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.60827092 8.687331555 8.576406432 8.184179449 8.444767663 8.503360383 8.660146206 8.732014722 8.610842405 8.467359941 8.49528808 8.443131573 187928407 pcaG Organic Remediation Aromatics Other aromatics Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.135523708 8.555117679 8.110146837 8.824647644 8.546547645 8.562323501 8.817682161 8.64439551 8.646111197 8.661964755 8.660801209 8.645029752 77463896 norB Nitrogen Denitrification Rhodobacter sphaeroides 2.4.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 8.932032349 8.694621977 8.494434695 8.689591907 8.573461135 8.634183169 8.818027145 8.358862303 8.99843597 8.48661748 8.541324747 8.49421285 194368252 sigma_70 Stress Sigma factors Myxococcus xanthus superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus; 8.983062198 8.883825927 8.664574442 8.452951007 8.588762746 7.97780958 8.542591931 8.785791371 8.579391005 8.535560413 8.348345171 114542776 Catechol Organic Remediation Aromatics Other aromatics Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.307062265 8.302194419 8.383642605 8.744613275 8.630628916 8.320840466 8.454292185 8.220840499 8.579037542 8.350586422 8.458066641 8.114480834 119898730 pheA Organic Remediation Aromatics Other aromatics Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8.143884676 8.171114071 8.12344009 8.135262906 7.954351765 7.76515443 8.203043483 7.883643647 8.00039989 7.752939612 8.146420407 229864795 amyA Carbon cycling Carbon degradation Starch Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 8.329020979 8.360445679 8.57639634 8.217963092 8.235254661 8.126163494 8.07332836 8.165642541 8.365874696 8.043493414 8.10414793 7.833214553 148569675 hrcA Stress Heat shock Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 9.503338407 9.420884615 9.747896418 8.594323543 8.833333759 8.965132897 9.25204321 8.970776483 9.36075899 8.860316548 9.363994722 8.870800759 32474704 pstA Stress Phosphate limitation Rhodopirellula baltica SH 1 8.914621428 8.908560956 8.974478282 8.070661169 8.222357786 8.581694833 9.019213934 8.293085153 8.897454683 8.539325923 8.523537573 8.535926258 62003523 narG Nitrogen Denitrification uncultured bacterium 8.89514781 8.752291809 9.016073184 8.640657189 8.482844404 8.422188926 8.451297778 8.590247408 8.315453572 8.686913136 8.628084497 8.392371739 167071091 CopA Metal Resistance Copper Rhizobium leguminosarum bv. trifolii WSM1325 7.714469986 7.757875689 7.390035463 7.53761014 7.398719383 7.433088678 7.797850927 7.585879338 68164666 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.522840581 8.90472073 8.839321009 8.24466816 8.276490567 8.191617878 8.118741773 8.244237446 8.512319739 8.328359866 8.152881609 123967460 bphA Organic Remediation Aromatics Polycyclic aromatics Sphingobium yanoikuyae 8.622984356 8.357303138 8.402147327 8.37257276 8.249798242 7.955147429 8.050347061 8.017895444 8.251865139 8.208379864 8.390581526 8.23540345 91976687 Catechol Organic Remediation Aromatics Other aromatics Rhodopseudomonas palustris BisB5 9.219716601 9.166222901 9.044154547 8.703701032 8.767324081 8.73649585 8.673043542 8.745243377 8.621043291 8.368311304 8.641788818 8.656139681 78695932 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.695575541 8.812102813 8.529657178 8.011228085 8.01546147 8.07289501 8.359451155 8.113245031 8.433636568 8.126950814 8.100951009 8.007187386 169186127 linB Organic Remediation Pesticides related compound Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 8.294070339 8.478563578 8.403488434 8.131489273 7.459139022 7.717952634 7.576995738 7.645357135 7.409869692 7.801386825 7.855899332 91715324 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Shewanella denitrificans OS217 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella denitrificans; 8.662017277 8.318892549 8.561252792 8.317222089 8.193225741 8.157507808 8.129831256 7.8915402 8.282136243 7.910171865 7.915684155 8.080075761 254488349 sox Sulphur Sulphur oxidation Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.874067998 8.359441446 8.33672934 7.967683515 8.114007815 7.923195117 8.092276066 8.19900245 8.150410501 8.053454359 7.888623009 7.705035784 157804875 APS_AprA Sulphur adenylylsulfate reductase endosymbiont of Inanidrilus exumae 9.225515296 8.802393855 9.305379715 8.490910208 8.365595669 8.399130913 8.436868172 8.106537843 8.543180123 8.271160672 8.348536561 8.543407698 221727407 ara Carbon cycling Carbon degradation Hemicellulose Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.65880152 8.942351407 8.255187112 8.232017343 8.7376541 8.930457993 8.417182877 8.783520334 8.541208885 8.707238622 8.885939826 8.354437139 120561285 gyrB other category gyrB Desulfovibrio vulgaris subsp. vulgaris DP4 8.469541746 8.662499507 8.817908897 8.517586618 8.64879869 8.490788627 8.364477937 8.735895655 8.409725117 8.666492328 8.571778162 8.019780622 218680146 endoglucanase Carbon cycling Carbon degradation Cellulose Rhizobium etli CIAT 894 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.388980859 8.077102538 8.226565331 7.644086602 8.209103244 8.058337864 7.894651505 8.382092025 7.9939468 8.198245691 7.775762765 67985209 ureC Nitrogen Ammonification Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 9.307530919 9.030921865 8.97376786 9.365697497 9.220325549 8.918093684 9.31105442 9.275465351 8.922005401 9.290278883 9.145179194 8.896139826 126709873 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 8.024867034 8.323454523 8.081192235 8.146466139 8.112647904 7.705977923 8.073170735 8.140865683 8.220802209 8.204343533 8.150439606 121595815 sigma_32 Stress Sigma factors Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 8.339232687 8.301155124 8.866311588 8.627480622 8.31232322 8.178345995 8.898312613 8.670515619 8.758063155 8.474401721 8.537654404 89512918 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.390645948 8.176984759 8.254972672 7.605268512 7.486914178 7.571007564 7.385362721 7.430263474 7.804224519 7.571891126 7.595853663 7.65755174 261341537 hly virulence hemolysin Enterobacter cancerogenus ATCC 35316 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 9.26651313 9.125324482 9.320398746 9.069509651 9.029982816 9.084619321 9.256316481 9.176708202 9.2709806 9.043243795 9.357909612 9.201534002 240949300 sigma_24 Stress Sigma factors Actinobacillus minor NM305 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus minor; 7.006890759 6.998622256 222111359 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Diaphorobacter sp. TPSY superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax ebreus; 9.711574901 9.646871285 9.584150524 9.143560633 8.988349869 8.952528902 8.924639995 9.027860113 8.98388257 9.112270844 9.15310086 9.354505957 221163273 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 9.432536713 9.444411385 9.290245918 8.605295845 8.476493257 8.343984344 8.61298419 8.387153267 8.61726175 8.509374921 8.560243014 8.747681011 257062777 hly virulence hemolysin Slackia heliotrinireducens DSM 20476 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Slackia;species:Slackia heliotrinireducens; 9.301112666 9.027857204 9.067832467 8.786567727 8.396469085 167541394 mcrA Carbon cycling Methane Methane production uncultured bacterium superkingdom:Bacteria; 9.043616165 8.857151421 9.183915707 8.524672806 8.376865484 8.550644248 8.222248386 8.166685493 8.142962919 8.45836371 8.633899322 8.676346701 159036240 phtA Organic Remediation Aromatics Aromatic carboxylic acid Salinispora arenicola CNS-205 8.393190537 8.12507767 8.623943818 7.800510594 7.750801892 7.531194962 7.475929315 7.556968648 7.909679303 7.848518229 7.822897014 7.641166881 110635280 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 8.056238479 8.208195378 7.427347493 7.718405784 7.561647779 7.047057776 7.605700634 6.966428547 7.562633778 188578913 pcaG Organic Remediation Aromatics Other aromatics Xanthomonas oryzae pv. oryzae PXO99A 8.67208991 8.663988342 8.840020139 8.462774869 8.678641814 8.891996037 8.925127767 9.012730446 8.719582059 9.070564983 9.070566002 9.167054013 56459705 ZntA Metal Resistance Zinc Idiomarina loihiensis L2TR 8.444385342 8.541626393 8.758945612 8.451608696 8.569791974 8.688272949 7.96140105 8.199857178 8.283750376 8.526669608 8.711066665 8.162570976 71735592 xylC Organic Remediation Aromatics BTEX and related aromatics Pseudomonas syringae pv. phaseolicola 1448A 8.916889883 8.739271354 8.951597352 8.35165475 8.470513811 8.375543574 8.367971021 8.439097828 8.820947864 8.545721906 8.808802136 8.501911703 110284454 nagG Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 9.583679125 9.665859391 9.461979981 10.25233934 9.914896365 10.18617568 9.967761295 10.39707546 9.879637454 10.24375076 10.47474652 10.04978466 94416900 tftH Organic Remediation Aromatics Chlorinated aromatics Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.655664787 8.426647115 8.775284577 8.032018294 7.97593668 7.973414356 7.956552931 7.857585472 7.978189252 8.098413831 8.056638887 10174629 alkH Organic Remediation Other Hydrocarbons Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 9.384554745 9.219510352 9.375316144 8.966289284 8.869933662 9.000086031 9.03666998 8.844411746 8.884285856 8.892442107 8.877555602 8.817444237 225200693 SMR_antibiotics Antibiotic resistance transporter Proteus penneri ATCC 35198 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus penneri; 9.001351843 8.842188721 8.977047631 8.482967116 8.23340381 8.315739772 8.335340173 8.082091295 8.422793518 8.10802357 8.103495228 8.589553503 256792560 sigma_70 Stress Sigma factors Slackia heliotrinireducens DSM 20476 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Slackia;species:Slackia heliotrinireducens; 9.031292887 8.811317675 8.573671289 8.919409922 8.751075788 8.360065283 8.709980998 8.681685787 8.525229751 8.548875762 8.638104281 8.60341676 255008523 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Bacteroides fragilis 3_1_12 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 8.129829156 7.9173406 7.235925047 7.194806184 7.093906336 6.651095817 6.919160579 7.355633801 7.020531253 6.787409059 117649665 fnr Stress Oxygen stress Acidothermus cellulolyticus 11B 8.506072207 8.465400996 8.62258612 7.581662008 7.76384815 8.200448614 8.158556368 7.449352994 7.516361052 8.000106797 8.071484295 94549089 gyrB other category gyrB Acidobacteria bacterium Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 7.606648859 7.649508927 7.792735977 7.097049352 7.916799188 6.94396563 7.300331373 218960464 obgE Stress Radiation stress Candidatus Cloacamonas acidaminovorans superkingdom:Bacteria;genus:Candidatus Cloacamonas; 8.57856368 8.35315609 8.073003289 7.924024269 8.079157173 8.198875299 8.112491597 7.598392168 8.327423834 7.691791661 8.034046432 7.576909537 114568734 CopA Metal Resistance Copper Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 8.672880825 8.886393467 9.229959488 8.519548616 7.942568078 8.261809314 7.720918357 7.519197694 8.313748916 8.264568443 8.170823491 8.423644004 39940324 CadA Metal Resistance Cadmium Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 9.288045358 9.218529053 9.555950396 8.554006706 8.739175982 8.408173724 8.543586312 8.324727229 8.729217315 8.8096144 9.081139237 8.730219243 256714968 srt virulence surface protein Lactobacillus coleohominis 101-4-CHN superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus coleohominis; 9.122875625 8.826644266 8.970790072 8.702318209 8.648630926 8.553370522 8.448024416 8.79533636 8.707924619 8.738756575 8.83341171 8.959654114 115370099 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 8.497967822 8.364633516 8.439275529 7.901861598 7.94883159 8.037066108 8.129668954 7.817206396 8.378801228 7.813360796 8.089528746 7.990617769 167657242 ppk Phosphorus Phosphorus utilization Eubacterium siraeum DSM 15702 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium siraeum; 8.514594463 8.43253989 8.50308126 7.551191793 7.642079168 7.86409457 8.042259968 7.182248107 8.190863458 7.599936131 7.49416794 7.592215494 91788100 mer Metal Resistance Mercury Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 9.176773011 8.906585486 9.074074381 9.163586979 8.724054863 8.387870506 9.01524406 8.917648703 8.950689256 8.949820538 9.080547791 8.693876316 10174232 sigma_24 Stress Sigma factors Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 7.519743875 7.213074127 7.269901988 6.985216499 7.122976388 7.75532446 7.25139373 7.335784622 7.543877365 72121326 tfdA Organic Remediation Aromatics Chlorinated aromatics Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 9.990325473 10.3138374 9.917822165 10.59197353 10.54390654 10.32214715 10.82139492 9.957089858 10.55442205 10.63187266 10.30449753 53802588 sigma_32 Stress Sigma factors Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 8.181330485 8.341972189 8.300038573 7.551904673 7.455948784 7.586966167 7.519119917 7.409355772 7.915867413 7.63767317 7.464930751 7.58319513 227989602 pstC Stress Phosphate limitation Meiothermus silvanus DSM 9946 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 8.593129945 8.805292906 8.676625113 8.388930946 8.500218872 8.084051578 8.053243746 7.818618888 7.932500248 8.154851308 8.407634763 269933986 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Mobiluncus mulieris 28-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus mulieris; 9.078773048 8.809795976 8.869478734 8.653785265 8.44823484 8.344882167 8.594050923 8.629973823 8.644664544 8.478571355 8.81929042 148255927 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Bradyrhizobium sp. BTAi1 8.835285226 8.479405935 8.705642942 7.859964155 7.991454539 8.06835967 8.065794548 7.509935964 7.717577411 7.695208975 7.977982169 150036086 sox Sulphur Sulphur oxidation Leucothrix mucor superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Leucothrix; 9.807949738 9.653601588 9.827345782 8.494649721 9.423145083 9.302166624 9.097898413 9.111199787 9.404147568 134132818 ChrA Metal Resistance Chromium Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 8.899900435 9.092725981 8.924449046 8.621660494 9.145250502 9.481254078 9.315115845 9.515830936 8.808892219 9.27383838 9.506724148 9.274894902 214042208 vanA Carbon cycling Carbon degradation Others Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 9.139473865 8.518288679 9.16905051 8.795110721 8.559700074 8.033252895 8.673631866 8.297246565 8.462117235 8.179167464 8.262493282 95109091 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae; 9.995030475 9.656529338 9.74484852 9.434023742 9.541700155 9.399355227 9.30913614 9.452068976 9.084259884 9.466329887 9.500051615 9.713495003 18161786 narH Stress Oxygen limitation Pyrobaculum aerophilum str. IM2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum aerophilum; 8.454776125 8.581059185 8.779773718 8.302141005 8.095822053 8.065033169 7.714135479 7.6036318 8.297158714 7.768264658 7.935693637 8.232117527 145702867 Fe_S_cluster_binding_protein Bioleaching Electron transport Metallosphaera sedula DSM 5348 8.377016925 8.524790623 7.797365981 7.560341669 7.287293367 7.459710808 254512272 pcc Carbon cycling Carbon fixation Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 9.031741378 8.969426177 9.31079796 8.660772178 8.545580468 8.555286414 8.88011321 8.55040345 8.560970569 8.905416838 8.939302506 8.682185012 158338215 ureC Nitrogen Ammonification Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;genus:Acaryochloris;species:Acaryochloris marina; 9.23310941 9.271773835 9.390969727 8.667771185 8.581657105 8.578479739 8.479649192 8.383037544 8.326904667 8.627241227 8.679350068 8.849630932 146154646 gyrB other category gyrB Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 8.636137296 8.448457881 8.548014435 8.117888445 8.027093153 7.768376518 8.130238248 8.322090867 7.212828306 8.332642033 8.387824759 8.507397133 209521659 tfdA Organic Remediation Aromatics Chlorinated aromatics Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 9.587915291 9.676702306 9.379605222 9.036863796 8.74381337 9.283336398 9.516775802 8.897053039 9.513245958 9.223428836 9.400940159 9.306556697 110598124 nifH Nitrogen Nitrogen fixation Chlorobium ferrooxidans DSM 13031 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium ferrooxidans; 8.152062569 7.811880173 8.110444265 7.28068697 7.156303633 7.790396044 7.708417982 7.238521174 8.077296011 7.374116017 7.204606247 7.316009043 94492660 gyrB other category gyrB Coxiella burnetii Dugway 7E9-12 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Coxiellaceae;genus:Coxiella;species:Coxiella burnetii; 8.36303076 8.156752411 7.388742269 7.520228996 8.096628256 8.046696311 7.671934076 8.091979873 7.860544044 7.797212499 7.725930094 182633629 nitA Organic Remediation Aromatics Other aromatics Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 8.355327904 8.653071614 8.526924139 8.124558833 8.35032694 7.833742367 7.909987224 8.109858269 8.181262499 8.231205717 8.148713327 7.759465587 269218804 amyA Carbon cycling Carbon degradation Starch Actinomyces sp. oral taxon 848 str. F0332 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 848; 8.272875253 8.164968549 8.292135303 8.235061264 7.879708107 7.875085821 8.037509204 7.676778809 8.198170441 7.755517828 7.554684096 7.773883904 169759883 benD Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida W619 8.059475715 8.356410838 8.26662442 8.177234084 8.181497566 8.281779004 7.986410577 8.593239053 8.140366634 8.24886795 8.359987112 8.081763726 119719969 pstB Stress Phosphate limitation Thermofilum pendens Hrk 5 9.21330171 9.047088714 9.078712465 8.491749652 8.240850522 7.997084875 7.71715623 8.044801466 7.874361687 8.043851782 8.278730334 8.56087012 192764428 narG Nitrogen Denitrification uncultured bacterium 8.374169706 8.167286552 7.825197401 7.64496025 7.95316362 7.875455864 8.141818254 8.36839632 8.034602787 7.892034277 8.081309927 113525897 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.321799665 8.005780397 8.111707238 7.550756137 7.837711862 7.617328834 7.835573409 7.336585349 7.994403037 7.276170853 7.202702633 7.562493686 118592923 xlnD Organic Remediation Aromatics Other aromatics Stappia aggregata IAM 12614 8.353041775 8.787384513 8.619455623 7.513402817 7.537376956 7.623450338 7.869248347 7.205175259 7.496952657 7.662125458 7.686219716 247538325 vip virulence virulence protein Dickeya zeae Ech1591 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 9.210068894 9.131171436 9.522543433 9.020325725 8.847675295 8.775660245 9.022571194 8.962430398 8.83017911 9.243191622 9.130417403 8.993482937 150377959 CopA Metal Resistance Copper Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 8.386761463 8.385390652 8.258365972 8.073195431 8.127125184 8.025361196 7.952450335 8.444831836 8.296201425 8.280965216 8.260208667 8.509591759 209520083 proO Organic Remediation Aromatics Other aromatics Burkholderia sp. H160 8.948134962 8.971292181 8.765698598 8.541437523 8.362016122 8.331716611 8.776610034 8.471615504 8.731946495 8.391669623 8.387742445 8.495764779 26278916 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.54931412 8.474834568 8.526164101 8.548401663 8.579194257 8.448312735 8.76689811 8.367241446 8.660492303 8.310207778 8.695343881 8.227855276 255326551 srt virulence surface protein Rothia mucilaginosa ATCC 25296 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Rothia;species:Rothia mucilaginosa; 11.09172163 10.96646408 10.95996264 10.71253104 10.95155073 11.04691449 10.87466159 10.80169278 11.10230824 10.75660501 11.11530838 10.98856188 115423486 MATE_antibiotic Antibiotic resistance transporter Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 8.741402237 8.393482587 8.697492792 8.847878769 8.454901768 8.35354817 8.817279527 8.615750588 8.655250981 8.564620259 8.237023728 8.5897293 119879227 mdlD Organic Remediation Aromatics Other aromatics Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 8.661415958 8.862222061 8.839840913 8.3842461 8.455397936 8.062077449 8.148487943 8.562323017 8.753278938 8.712919052 8.512828966 8.669660631 118619352 clpC Stress Protein stress Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 8.246398888 8.351028224 8.390220559 8.001756658 8.254102097 8.095297497 8.361669167 8.184577497 8.115275569 7.8928253 8.316248138 8.172957543 227820960 oxyR Stress Oxygen stress Rhizobium sp. NGR234 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 8.663687229 8.391155409 7.853847412 7.965582455 8.432169817 8.207719893 7.806543777 7.915009232 8.010653947 8.01128907 170750903 pcpB Organic Remediation Herbicides related compound Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 8.419154704 8.285289418 8.180014988 8.180869808 8.067064878 7.708410678 7.832150236 7.975651442 8.32048053 8.122505348 8.260985254 8.04261006 217503846 hrcA Stress Heat shock Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 9.138689601 8.257681596 8.45084615 8.845812426 8.50146804 8.005302095 8.612276607 8.574233266 8.580331019 8.395703058 8.023325142 161386168 glnA Stress Nitrogen limitation Phaeobacter gallaeciensis 2.10 11.15786764 11.05646174 11.02118883 10.26318879 10.29231328 10.16895923 10.37527823 9.773435765 10.37283174 10.11538339 10.4925856 10.39961189 111279206 TerC Metal Resistance Tellurium Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 8.463453371 8.620398497 8.557290151 8.159648865 8.453041562 8.393277859 8.537380358 8.825519272 8.40027723 8.944214453 8.715337859 8.563290187 126353033 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Caldivirga maquilingensis IC-167 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Caldivirga;species:Caldivirga maquilingensis; 8.558682234 8.326835833 7.802691019 8.124450289 8.076094573 7.409339648 7.919959158 7.810028059 7.83592226 7.959758029 8.13965565 87309129 endoglucanase Carbon cycling Carbon degradation Cellulose Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 8.084312125 8.177934906 8.256638895 7.888120591 8.267338663 118469013 CODH Carbon cycling Carbon fixation Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 9.542619227 9.337708153 9.436732254 9.945289743 9.611315709 9.105968746 9.861107255 9.955314872 9.581231945 9.537215173 9.367642543 9.165878425 119434075 nphA Organic Remediation Aromatics Nitoaromatics Arthrobacter sp. JS443 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.616334888 7.357510858 14389143 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.59662193 8.655845805 9.04934752 8.353417346 8.501489673 8.391098235 8.304807587 8.221521705 8.33543154 8.404239052 8.22368029 8.550704891 237746843 AceB Carbon cycling Carbon degradation others Oxalobacter formigenes HOxBLS superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Oxalobacter;species:Oxalobacter formigenes; 8.5167927 8.503195445 8.970559437 8.058000505 8.264083642 8.138361981 7.868543757 7.874199097 8.013682135 8.035891515 8.002228125 8.354813159 28854202 arsB Metal Resistance Arsenic Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 8.897047793 8.375435806 8.681907474 9.333309442 8.846903819 8.800177942 9.146006623 9.145344326 8.976760074 9.118644097 8.905966797 8.44318752 209520689 silC Metal Resistance Silver Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.773704202 8.979134581 8.701071803 9.195298252 9.170314587 9.025577378 9.229667602 9.479928616 8.994123319 9.192983373 9.06909278 9.23414207 170079013 dnaK Stress Heat shock Synechococcus sp. PCC 7002 8.191333051 8.192721156 8.388645811 7.986747885 7.79719379 7.693442257 7.626284639 8.140707881 8.150870683 8.16674815 7.893170862 8.031566474 115519141 nifH Nitrogen Nitrogen fixation Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.924276748 8.065216823 7.588657507 7.343567637 7.129280543 7.73785746 7.403617502 7.751001252 69155188 TehB Metal Resistance Tellurium Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 9.093456675 9.081771714 8.771152809 8.732813961 8.762952811 8.573280502 8.631030669 8.895564222 8.725631469 9.049225893 9.051582493 8.822866917 145318504 TehB Metal Resistance Tellurium Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 8.415394174 8.550030703 8.336758961 8.152692415 8.045648238 8.049981467 7.849819259 7.878104906 8.101740974 7.941320953 7.810116908 8.225375162 167361692 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.091936457 7.983551992 7.823055232 7.85011657 7.769755208 7.65394062 7.91089325 8.111832731 8.209336678 8.118294531 7.854637441 46199374 fnr Stress Oxygen stress Thermus thermophilus HB27 8.443000223 8.726013331 8.334800692 7.915305015 7.961164213 8.595793014 8.644989357 8.319547822 8.381992439 8.16904256 8.447870301 8.190745107 110611605 mauAB Organic Remediation Herbicides related compound Alcaligenes faecalis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes; 8.161549749 8.785955031 8.262397316 7.993437066 7.959937247 8.573529816 8.93820146 8.403166772 8.640159817 8.18183682 8.351406261 8.01359534 72122405 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 9.817815019 9.501137281 9.664641297 8.713635405 8.477018818 8.382709208 9.128399432 9.316691336 9.029167509 88778859 ChrA Metal Resistance Chromium Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 8.093131635 8.215973715 7.993321711 7.696779045 7.748397994 6.766372848 7.318590307 7.504323321 7.853582006 22449889 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.618142669 8.62353203 9.276484973 8.490397444 8.54117223 8.588257956 7.770675543 7.777730782 7.95211756 8.449379451 8.348776237 8.253497298 22295628 xylanase Carbon cycling Carbon degradation Hemicellulose Thermosynechococcus elongatus BP-1 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Thermosynechococcus;species:Thermosynechococcus elongatus; 8.67785525 8.796409455 8.981985205 8.693718453 8.826374233 8.834062292 8.603356921 8.601336977 8.554380943 8.915774668 8.792511306 8.513310406 239838136 amyA Carbon cycling Carbon degradation Starch Micrococcus luteus NCTC 2665 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus;species:Micrococcus luteus; 9.154927321 9.021711821 9.078385413 8.767964092 8.587028141 8.50845659 8.589697919 8.722916722 8.648768669 8.639836609 8.603820106 8.8454867 37521126 NiR Nitrogen Assimilatory N reduction Gloeobacter violaceus PCC 7421 8.174846996 8.205426029 8.161632687 8.49317728 8.63197941 8.515183683 8.648757226 8.588736576 8.50788011 8.861691882 8.738506122 8.400621764 116073047 todF Organic Remediation Others Synechococcus sp. RS9916 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.343525122 8.510350522 8.707874665 8.378284349 8.483211933 8.103992952 8.249764788 8.52704857 8.281131131 8.455470864 8.195056862 8.10856681 227964587 amyA Carbon cycling Carbon degradation Starch Tsukamurella paurometabola DSM 20162 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 10.16694946 10.15832455 10.01619853 9.826934169 9.545866387 9.733783284 9.716586012 9.334759617 9.947730281 9.858469931 9.92712609 9.837740262 198269682 sigma_24 Stress Sigma factors Bacteroides plebeius DSM 17135 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides plebeius; 8.981346225 8.981972155 8.53499564 8.086240313 7.93417623 8.419838718 8.205461833 8.427151507 7.984163994 8.099270975 8.30628227 145224031 katE Stress Oxygen stress Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 9.575758172 9.577250291 9.54459089 9.292364393 9.181373919 8.994585389 9.027083945 8.886175064 8.993002752 9.345942879 9.231460062 9.104821212 75907348 CopA Metal Resistance Copper Anabaena variabilis ATCC 29413 8.435223307 8.516711491 8.920494109 8.087503244 8.006873052 7.900961342 7.849234714 7.767417114 7.798706149 7.810174135 7.738618872 7.961060923 197695337 CopA Metal Resistance Copper Streptomyces sp. SPB74 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 9.354845633 9.260630549 9.393071231 9.080566236 9.162064336 9.047288494 9.52867369 9.218446284 9.176263784 9.109004968 9.458152475 9.256900543 16332205 nifH Nitrogen Nitrogen fixation Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 9.039100576 8.972327826 9.158376268 8.230273186 8.115012937 8.187883814 7.673606402 7.552996365 8.264721833 7.956215693 8.284979183 62825531 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.98465378 8.907742888 8.962430348 8.459477775 8.361913443 8.323898124 8.25951288 8.146187381 8.366883015 8.409372326 8.37425442 8.501471861 120590206 linB Organic Remediation Pesticides related compound Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 9.627348183 9.846358876 9.990091165 8.481786062 8.39239078 9.072606731 8.875596219 8.696185982 9.10521986 9.156916068 8.998588384 9.245508753 124257903 tutFDG Organic Remediation Aromatics BTEX and related aromatics Desulfobacterium cetonicum superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfosarcina; 8.167100585 8.3416179 8.270189738 7.479703221 7.21963927 7.680992829 7.97474083 7.483495513 7.601646058 7.48159808 7.306263195 186684234 pstA Stress Phosphate limitation Nostoc punctiforme PCC 73102 9.018748914 9.284386145 9.405612127 9.200745717 9.304538148 9.196018351 9.42641375 9.977176849 9.438784254 10.02837604 9.654141514 9.881050794 84872788 sigma_32 Stress Sigma factors Sinorhizobium sp. BL3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium; 7.819701517 7.787693238 7.85019843 7.721690972 7.660996717 8.222861968 7.635474415 7.405113997 7.802813657 42526144 dnaK Stress Heat shock Treponema denticola ATCC 35405 8.103191819 8.109780441 7.400517304 7.445559628 7.545648506 7.259114843 7.293985772 7.891297885 7.698514161 7.420790049 7.392840817 260896735 iuc virulence aerobactin Vibrio parahaemolyticus Peru-466 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 8.215718187 8.082209567 7.601382011 7.475054588 7.713211133 7.456185818 6.946028416 7.681803712 7.192786838 7.260533517 151302287 APS_AprA Sulphur adenylylsulfate reductase Desulfobulbus marinus 8.064305688 8.130065469 7.430289888 7.195897614 7.510822541 7.447606521 7.448044826 7.369725972 7.379105954 7.323636275 7.818634984 83755457 Arylest Organic Remediation Aromatics Other aromatics Salinibacter ruber DSM 13855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 9.714171066 9.913984592 9.46191263 9.178419629 9.271506674 9.743248234 10.07880235 9.631482804 9.902319604 9.346751945 9.401870325 9.379537163 251798478 proV Stress Osmotic stress Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 8.690562575 8.718340272 8.742150808 8.097006554 7.889564274 8.072418299 7.592851994 7.199499315 7.995393687 7.797992813 7.786526544 8.06815594 46307878 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.900596633 7.984129623 7.803091834 7.682630585 7.586156778 8.121224988 7.783189538 7.73922705 7.887377935 260063171 amyA Carbon cycling Carbon degradation Starch Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 8.36973266 8.172793563 7.934724646 8.222653741 8.415249051 7.835407351 8.393465124 8.26469895 8.089254062 8.250190007 7.894807041 227379411 endochitinase Carbon cycling Carbon degradation Chitin Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 10.00287094 10.04912715 9.65355254 10.16696986 10.15472826 9.94575631 9.959548752 10.37558186 9.99866554 10.15184787 10.10617846 10.19508974 108804401 PobA Organic Remediation Aromatics Aromatic carboxylic acid Rubrobacter xylanophilus DSM 9941 8.787380236 8.847418155 9.020648552 8.568245846 8.492484212 8.256770512 8.325380747 8.44050219 8.217714495 8.373399141 8.202176315 8.559854703 32307929 narG Nitrogen Denitrification uncultured bacterium 9.463527592 9.41896145 9.26582494 9.056303313 9.346230016 9.341228311 9.836118038 9.105575325 9.538802548 9.119373154 9.358691704 9.192488327 18496953 helicase_P4alpha_type Bacteria phage REPLICATION Mycobacterium phage TM4 order:Caudovirales;family:Siphoviridae; 8.109929861 8.423164479 8.394738928 8.291593986 8.451457935 8.205513121 8.313632257 8.587032339 8.471909952 8.161153603 8.287313794 229214419 AceA Carbon cycling Carbon degradation others Dethiosulfovibrio peptidovorans DSM 11002 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Dethiosulfovibrio;species:Dethiosulfovibrio peptidovorans; 8.651089651 8.46026445 8.848519871 8.444154102 8.187815599 8.204698482 8.609895696 8.629265781 8.188587873 8.384748596 8.307196815 8.487265754 118729799 HBH Organic Remediation Aromatics BTEX and related aromatics Delftia acidovorans SPH-1 8.243755879 8.121496803 7.966836459 8.132798568 7.757919275 7.835437721 7.702946784 7.935167156 7.720816506 7.488836642 7.564415496 89351430 pcc Carbon cycling Carbon fixation Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.467112513 8.388646052 8.522420783 8.804128539 8.829145362 8.686588953 8.398106837 8.884977185 8.608625053 8.795746117 8.849118631 8.284593714 158329216 phn Organic Remediation Herbicides related compound Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 9.486765089 9.42657215 9.643656047 8.827480386 8.608418739 8.754945654 8.65323637 8.539434324 8.366320893 8.623119451 8.761650028 8.849579009 269835747 SMR_antibiotics Antibiotic resistance transporter Vibrio harveyi 1DA3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 8.9644318 8.945508676 9.001122445 8.23013871 8.134316278 8.477649885 8.724743627 8.941183978 8.757926695 9.43831839 9.215044676 90335751 katE Stress Oxygen stress Aurantimonas manganoxydans SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 8.683874962 8.550409884 8.178754408 8.344878434 8.206848769 8.195968909 8.463571714 8.304445711 8.75873071 8.083380636 8.422141502 8.102735024 149143393 ahpC Stress Oxygen stress Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.648558835 8.45378485 8.540346049 8.12649866 8.033830503 7.806809717 7.746604167 8.104950247 8.20968706 8.221782443 7.927428033 7.806590116 55232584 P450 Energy process Energy process Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 8.056789174 8.212799991 8.434233156 8.595594861 8.770934164 8.535421435 8.431590354 8.773328159 8.552812105 8.675905354 8.332726065 8.120281529 192764478 narG Nitrogen Denitrification uncultured bacterium 8.7950731 8.930801855 8.78483004 8.595060359 8.6037676 8.554764853 8.851191238 8.756629649 8.874972209 8.749681943 8.71869443 8.92758419 224602465 ureC Nitrogen Ammonification Lutiella nitroferrum 2002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Lutiella;species:Lutiella nitroferrum; 9.761620339 9.51932624 9.717197438 9.154984514 8.978914462 8.963157584 9.250049866 8.860054929 9.483201702 8.963259039 9.279070966 9.322144368 219675961 atzA Organic Remediation Herbicides related compound gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.694835434 8.695865993 8.831790881 8.198163988 7.891230643 7.680182549 7.81363058 7.935105346 8.08005573 7.788857824 8.190103254 8.007365634 222112606 fnr Stress Oxygen stress Diaphorobacter sp. TPSY 8.670668782 8.661657799 8.782232299 8.636145928 8.605700566 8.445980546 8.742880851 8.762970454 8.723125448 8.689174866 8.574713237 8.608194296 261857033 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.664875378 8.375669353 7.801049639 7.694990784 7.869691404 8.012316158 7.601795589 8.378895656 7.755714289 7.708610538 7.796896495 153898656 trzN Organic Remediation Herbicides related compound Methylobacterium extorquens PA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 8.30171922 8.118666834 8.167366734 7.969125277 7.824945311 7.602072396 8.312020323 7.944275718 8.008758854 8.065981255 8.014691873 121609670 pimF Organic Remediation Aromatics Aromatic carboxylic acid Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 8.682710149 8.519755218 8.368886694 8.436645995 8.363819952 8.331805115 8.270212421 8.185280059 8.334189284 94984656 hly virulence hemolysin Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 8.196612589 8.131477485 8.572571408 7.872352889 7.96809891 7.840608007 7.682010412 8.10477479 8.230421604 8.015180379 7.560096719 7.893697443 194341797 sigma_70 Stress Sigma factors Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 9.180074404 9.239363335 9.159895756 9.814272302 9.857963563 9.779348831 9.520565492 9.973975143 9.381326418 9.948578142 10.02306496 9.778844838 254440483 pstA Stress Phosphate limitation Octadecabacter antarcticus 307 8.079195748 8.063624305 7.638513383 7.671228637 7.75304508 7.853508844 7.698957341 7.944288342 7.723497165 7.633143289 7.753370269 268618508 pstC Stress Phosphate limitation Sulfurospirillum deleyianum DSM 6946 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Sulfurospirillum;species:Sulfurospirillum deleyianum; 8.051584166 7.767761392 8.022178796 7.612939932 7.590786214 7.866920718 77465753 B_lactamase_C Antibiotic resistance Beta-lactamases Rhodobacter sphaeroides 2.4.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 8.191289312 8.454756237 8.853205682 8.565241459 8.63147776 8.273694826 8.484302075 8.81003373 8.282260476 8.713649607 8.639763216 8.3630272 46487401 amyA Carbon cycling Carbon degradation Starch Bacillus halodurans superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 8.538273827 8.745560845 8.947614439 8.167629239 8.093904772 8.107281428 7.563957612 7.688050664 8.179013245 7.826311248 7.655489144 8.058589042 281325269 sigma_70 Stress Sigma factors Burkholderia sp. CCGE1001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.445106915 7.994710892 7.94230997 7.81740572 7.629278444 7.879535896 7.599713737 8.038763662 7.624224071 7.654297933 7.591954871 115525806 4HBH Organic Remediation Aromatics BTEX and related aromatics Rhodopseudomonas palustris BisA53 9.135265492 9.102327833 9.342139406 8.647731153 8.759714259 8.600207636 8.5289594 8.312593685 8.285462667 8.551894277 8.646940495 8.754135347 84381134 obgE Stress Radiation stress Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 8.862188157 8.805429662 8.671420739 8.684430654 8.581860754 8.243279356 8.363625392 8.722253143 8.588279025 8.553461592 8.769065528 8.682130539 154283569 nbaC Organic Remediation Aromatics Nitoaromatics Ajellomyces capsulatus NAm1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 9.076076695 9.192908743 9.220593036 8.433215197 8.592269416 8.488504132 8.409210636 8.559674283 8.354421822 8.358925792 8.455099388 8.773973225 83653427 atzA Organic Remediation Herbicides related compound Burkholderia thailandensis E264 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 8.461752297 8.632645419 9.025205564 8.742424592 8.565239456 8.662912769 8.875996231 8.589575956 8.926560116 8.275396957 8.327596238 8.299010397 84786242 glnA Stress Nitrogen limitation Erythrobacter litoralis HTCC2594 8.197884693 8.545134606 8.20018574 8.852899817 8.857722242 8.645578169 8.667167352 9.296450725 8.442828288 8.717752686 9.01872146 8.724815814 90413284 CadA Metal Resistance Cadmium Photobacterium profundum 3TCK 9.536395696 9.03895377 9.518520623 9.035876298 8.386320205 8.958225882 8.76128943 8.81756273 8.532378714 8.818073638 8.843554499 9.13503869 114769362 pstB Stress Phosphate limitation alpha proteobacterium HTCC2255 9.223561465 9.166787647 9.393222402 8.433894815 8.308083674 8.229622347 8.137440843 8.454145339 7.274107141 8.29143938 8.025212237 8.696558132 145216439 AceB Carbon cycling Carbon degradation others Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.833871133 8.801720524 8.564845922 8.966104168 8.883960548 8.74506055 8.687125377 8.860882601 9.010873416 9.104190086 9.263871375 9.225273078 260415491 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria lacuscaerulensis; 9.282345676 9.141465362 8.920196425 8.795948506 8.711822958 8.5244292 8.653416057 8.68493295 8.964539072 8.441923352 8.516839501 8.683336023 116669946 pcc Carbon cycling Carbon fixation Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8.701345337 8.612450777 8.541087329 8.177838273 7.991346011 8.538109277 8.413252798 8.397850109 8.64264358 8.387044649 8.501663221 8.370298303 20136437 B_lactamase_C Antibiotic resistance Beta-lactamases Enterobacter cancerogenus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 8.261337201 8.212523166 8.103640109 7.769419925 7.57076171 7.893756207 8.219347717 8.193124735 7.658114372 7.636713706 7.886082366 92118883 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 8.464527538 8.325584534 8.350857581 8.232141809 7.974354726 7.998934694 8.098026067 7.827293425 8.311654277 7.988345818 7.983545329 7.97901016 257056811 AceB Carbon cycling Carbon degradation others Saccharomonospora viridis DSM 43017 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora viridis; 9.142300648 8.805379013 8.891216887 8.948693466 8.741608489 8.548373611 9.141785214 8.785080603 8.918907969 8.937763412 8.870472187 8.903543023 256588416 sigma_24 Stress Sigma factors Cyanothece sp. PCC 8802 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.063783996 8.452891771 8.229407432 7.694217987 7.492311672 7.761132579 7.96507197 7.46377225 8.097064455 7.381917939 7.524984263 7.083564042 94471347 narG Nitrogen Denitrification uncultured bacterium 8.255035678 8.362064507 7.817007986 8.134930664 8.281916363 8.389982488 8.146442664 8.180481768 8.282479043 7.8227054 7.915157649 147849840 sigma_70 Stress Sigma factors Synechococcus sp. RCC307 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.553944469 8.541072376 8.142414304 7.766345347 7.856309892 8.091103685 8.473317129 7.83176118 8.430094953 7.75572959 7.973400812 7.687895225 37900195 rubisco Carbon cycling Carbon fixation Synechococcus sp. OH20 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.124043561 8.138290737 8.302526282 7.988489209 7.515029125 7.630587106 7.579397641 7.94038509 8.035198111 7.989136753 7.896715681 8.078965552 256742998 hly virulence hemolysin Thiomonas intermedia K12 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas;species:Thiomonas intermedia; 8.84454223 8.711253629 8.786381648 8.382406325 8.72771478 8.185612839 8.270365511 8.212366856 8.559857482 8.513769766 8.367828562 8.248598399 55229628 nitA Organic Remediation Aromatics Other aromatics Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 8.754783502 8.770070736 8.283664767 8.242806014 8.277230851 7.880966724 7.955708361 8.397316673 8.048364416 8.176023543 8.47971934 214038437 ppx Phosphorus Phosphorus utilization marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.267609408 8.634281483 8.251675368 7.520298964 8.027147638 8.267214093 8.83759658 8.25745086 7.454614733 8.686522936 8.482390743 163794918 HBH Organic Remediation Aromatics BTEX and related aromatics alpha proteobacterium BAL199 8.407707012 8.213257929 8.612692807 8.493184151 8.288102068 8.031387077 8.117376866 8.673009326 8.306864495 8.61363084 8.39422698 8.549919902 50288619 cellobiase Carbon cycling Carbon degradation Cellulose Candida glabrata superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Nakaseomyces;species:Candida glabrata; 8.05720198 8.836215046 7.744128399 7.613945896 8.642213767 8.585779621 8.114525096 8.579324904 8.156613435 8.290593473 8.176053956 258554962 obgE Stress Radiation stress Nakamurella multipartita DSM 44233 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 8.343919536 8.207794935 8.436650222 8.215777674 8.137456219 7.977455942 8.064307079 8.399670239 8.159941521 8.330922469 8.319559009 8.292729737 86139088 HBH Organic Remediation Aromatics BTEX and related aromatics Roseobacter sp. MED193 8.360235714 8.202730954 7.568533849 7.456309379 7.6277922 7.400578755 7.36054553 7.580170437 7.571892702 67903538 pheA Organic Remediation Aromatics Other aromatics Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 9.005478842 9.073992592 9.370769701 8.344974758 8.923781442 9.055070144 9.528212468 8.627439301 9.574193866 8.955951764 8.690277146 8.851071843 168702162 amyA Carbon cycling Carbon degradation Starch Gemmata obscuriglobus UQM 2246 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata;species:Gemmata obscuriglobus; 8.293596481 8.312184529 8.548322353 8.047038783 8.040931297 8.258541227 8.476118449 8.091482704 8.535378071 8.286207024 8.27647945 8.046583832 84715412 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8.481133764 8.356240231 8.516610205 8.526114943 8.037796985 8.026355137 8.435360958 9.133484757 8.322138959 8.800476434 8.658149153 8.792182262 167778797 B_lactamase_B Antibiotic resistance Beta-lactamases Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' 8.571589099 8.529533565 8.485184789 7.888389778 7.706358578 7.850103413 7.406118855 6.866248358 8.114734786 7.435762306 7.467241671 7.649662429 217978789 pstA Stress Phosphate limitation Methylocella silvestris BL2 8.315453062 8.305468247 8.225548125 8.165861463 8.258212138 7.719457559 7.941527823 8.032184001 268549447 amoA Nitrogen Nitrification superkingdom:Archaea; 8.605804823 8.582604637 8.46278978 8.208825909 7.910735727 7.98951966 8.215945524 8.277593357 8.332527376 8.131694255 8.274848871 121607001 gyrB other category gyrB Polaromonas naphthalenivorans CJ2 8.698517314 8.511146173 8.720023941 8.576287369 8.36592394 8.118873822 8.200792166 8.590886928 8.63022053 8.369176502 8.277011523 8.400522504 188994524 ahpC Stress Oxygen stress Porphyromonas gingivalis ATCC 33277 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas;species:Porphyromonas gingivalis; 7.900833725 8.011768125 7.922175244 7.889798094 7.648279402 7.756963891 7.754165577 8.108442865 7.925062451 7.738291612 7.64758444 198262709 obgE Stress Radiation stress gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 9.090056395 8.631392508 8.872799147 8.810619385 8.653481843 8.791792776 8.822790119 8.483047402 8.602240822 8.822840469 8.295537896 167031251 tfdA Organic Remediation Aromatics Chlorinated aromatics Pseudomonas putida GB-1 8.351426222 8.276088119 8.475366902 8.048420637 8.065401073 8.056460879 7.972671009 8.042690047 8.128281165 7.98734045 8.129255307 7.901805659 163761442 sox Sulphur Sulphur oxidation Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 8.996631069 8.69098283 8.596173914 8.336786555 8.285965583 8.158209168 8.187013439 8.446031532 8.95262323 8.529230906 8.316219571 8.351678423 88925625 Al Metal Resistance Aluminum Desulfotomaculum reducens MI-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum reducens; 8.166528975 8.327636505 8.651893848 7.945335575 8.086149212 7.730210349 7.240163181 7.408101784 7.945475069 7.525556586 7.366056443 7.701960716 72087016 mdlB Organic Remediation Aromatics Aromatic carboxylic acid Strongylocentrotus purpuratus superkingdom:Eukaryota;kingdom:Metazoa;phylum:Echinodermata;class:Echinoidea;order:Echinoida;family:Strongylocentrotidae;genus:Strongylocentrotus; 9.115725861 8.778157648 8.955830513 8.63134231 8.616258095 8.233397738 8.605723674 8.595549208 146410487 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 9.411855545 9.346234713 9.270665448 9.120681811 8.973402498 8.871994008 9.182882207 9.164375058 9.195702728 9.173436772 9.188913467 9.110078645 261189215 endochitinase Carbon cycling Carbon degradation Chitin Ajellomyces dermatitidis SLH14081 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 9.496129326 9.212604148 8.954020013 9.222866632 9.151884668 9.048016832 9.265845882 9.14852707 9.020292822 9.332562201 9.316618304 9.276371421 222120567 pstB Stress Phosphate limitation Macrococcus caseolyticus JCSC5402 9.131885145 8.928654974 9.09967998 8.273570573 7.986296928 7.905679398 8.148461818 8.357437798 8.296280171 8.245346506 8.656625158 82948309 fnr Stress Oxygen stress Magnetospirillum magneticum AMB-1 8.60198222 8.53989081 8.422467526 8.464958979 8.846292203 8.380992526 8.382085199 8.608191926 8.403938548 8.693045688 8.660481174 8.67979858 112821555 ArsC Metal Resistance Arsenic Sphingomonas sp. KA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 9.146151291 8.680478945 9.048887125 8.532794844 8.512784483 8.625821592 8.151231402 8.57076745 8.361932772 8.374648863 8.45330294 8.699291195 211584716 chnB Organic Remediation Other Hydrocarbons Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 8.581040752 8.540636883 8.537043805 8.684818546 8.521496689 8.319064923 8.830567258 8.55615444 8.742728164 8.47474949 8.417719444 8.47681578 149811157 nagG Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.125962825 8.121724619 8.114451429 7.536681332 8.020226924 7.97164545 8.155496907 7.903539021 73535201 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.809778029 8.579816638 8.63100161 8.204249376 8.277135282 8.254473161 8.49617108 8.150705014 8.599723399 8.641606014 8.794564379 8.698674692 45822 amyA Carbon cycling Carbon degradation Starch Pelomonas saccharophila superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Pelomonas; 8.134979968 8.635314686 8.197350076 8.28452819 8.613316531 8.756268331 8.399147991 8.906435118 8.281085553 8.906993026 8.829879204 8.675773286 260464249 glucoamylase Carbon cycling Carbon degradation Starch Mesorhizobium opportunistum WSM2075 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 9.610618371 9.590603602 9.751626657 8.920739738 8.979520273 8.862150214 8.749133549 8.55566235 8.726736247 8.764417954 8.815172198 9.125325993 254470698 narI Stress Oxygen limitation Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 8.265732868 8.30590702 8.119955863 8.29898949 8.601218722 7.82205569 7.774218303 8.031630041 8.636820942 87331834 arhA Organic Remediation Aromatics Heterocyclic aromatics uncultured bacterium 9.315998939 9.184648259 9.48309681 8.58676789 8.545106235 8.511162742 8.441119964 8.103875012 8.39916653 8.469553533 8.409478176 8.756994604 188532466 arcB Stress Oxygen limitation Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 9.163134615 8.679640729 9.075406465 8.627318163 8.34915708 8.066766276 8.460442291 8.612152361 8.339405405 8.269731863 8.185500329 187728729 CadA Metal Resistance Cadmium Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 9.288122048 8.947760315 8.928612594 8.68809331 8.809438861 8.761020021 8.576306125 8.882871562 8.885365915 9.010536198 8.957583999 8.880555075 268309468 grpE Stress Heat shock Thermomonospora curvata DSM 43183 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora;species:Thermomonospora curvata; 9.023528468 9.06106659 8.79374108 8.513325231 8.632657366 8.847995471 9.000206142 9.016046783 8.909817252 9.403394168 9.365026604 9.012868798 207667142 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 8.389869073 8.283993521 8.503390757 8.078369794 7.92643849 7.825532547 7.778959048 7.562007869 8.261089748 7.784771993 7.774495953 7.800272599 26989378 pstB Stress Phosphate limitation Pseudomonas putida KT2440 8.874901034 8.539421744 8.893099306 7.890427198 7.748120241 7.76776002 7.256709707 7.230397192 7.936320525 8.007521967 8.039159712 8.009611832 170691351 grpE Stress Heat shock Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 9.442551659 9.378607525 9.512617498 8.638735983 8.968795358 8.941747002 8.300631762 8.983129248 8.92687298 9.14184847 9.084395704 71546568 FTHFS Carbon cycling Acetogenesis Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 8.11687023 8.057212506 8.265786771 7.490916971 7.462075841 7.308764965 7.016878295 7.510108371 7.175268812 6.935866062 7.776889019 167034582 nagG Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 9.947151967 9.837219313 9.645459554 10.00983468 9.697490005 9.450924659 10.07333165 10.10048683 9.672588603 9.945008699 10.08127756 9.641503165 169264 lip Carbon cycling Carbon degradation Lignin Phanerochaete chrysosporium 8.56555151 8.464810194 8.843181032 7.947399979 7.942107921 8.123070999 8.832105486 8.187604144 8.804326099 7.92229729 7.921276567 7.980517841 221184113 bphC Organic Remediation Aromatics Polycyclic aromatics Burkholderia multivorans CGD2M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 8.307315489 8.284884654 8.443760078 8.467707881 8.144462681 8.117547651 8.330320064 8.45252766 8.459500771 8.325187482 8.33265247 8.322846644 239933833 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces ghanaensis ATCC 14672 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 8.243117314 7.923235551 7.624036847 7.754244578 7.943259506 7.989072995 7.922398813 7.859242081 7.610739363 254281760 pstA Stress Phosphate limitation gamma proteobacterium NOR51-B 8.60283548 8.327736173 8.1353792 8.262385821 8.144933618 8.272634605 8.200258727 8.214612938 8.629797154 192808970 Tet Antibiotic resistance other Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.372227485 8.762732307 8.787433624 8.293345631 8.278558616 8.070195966 7.985147626 7.796008542 8.498188225 7.856829008 7.822798984 7.929007057 229469441 SMR_antibiotics Antibiotic resistance transporter Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 8.104135039 8.516271992 8.851057549 7.977671018 7.753649026 7.386914051 7.676813262 7.550738169 7.823925072 7.745100485 7.773049814 7.928716481 161161797 pstB Stress Phosphate limitation Sorangium cellulosum 'So ce 56' 8.701791836 8.808277 8.694554016 8.181139601 8.599926763 8.490117061 8.32425591 8.688466892 169884881 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Synechococcus sp. PCC 7002 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.824264644 8.949397467 8.731161888 8.348401324 8.197380456 8.254450688 8.070830909 7.855404798 8.354083153 8.056733873 7.893926485 8.311493713 158316069 mdlD Organic Remediation Aromatics Other aromatics Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 9.616045482 9.805796813 9.889558132 9.208270838 8.782514385 8.94193164 9.083459097 9.122255871 8.887267555 9.197835332 9.173020009 9.375437666 110818676 linB Organic Remediation Pesticides related compound Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.484394419 8.624218259 8.497493502 7.8394518 7.852335514 8.096617418 7.754597004 7.995854333 8.127012039 8.04620196 7.963562926 167648221 sigma_70 Stress Sigma factors Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 9.689144189 9.795336501 9.48465776 9.4439755 9.679891528 9.764601384 10.14571991 9.798441617 9.798089283 9.866321267 10.1026896 10.1853423 153010732 xylA Carbon cycling Carbon degradation Hemicellulose Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 8.407037332 8.163174781 8.455660912 8.100573137 7.809678223 7.783291766 7.74574314 7.920118939 8.029204175 7.846115648 7.702354524 7.793743449 17385101 narG Nitrogen Denitrification Enterobacter sp. Lgg10.2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 8.32859201 8.387823568 8.224610833 8.183787128 7.801071255 8.144947529 8.564627349 8.13057203 8.275464141 8.048276837 8.102522112 8.011482094 196256716 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.856366948 8.774037481 9.036282275 8.152197548 7.916391962 7.987765471 7.784566275 7.5795107 8.236034715 7.784747187 7.670893817 8.266065929 219869492 atzA Organic Remediation Herbicides related compound Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 8.549168819 8.710187388 8.858130717 8.395443845 8.586187517 8.543152505 8.741112329 8.705556714 148656906 TehB Metal Resistance Tellurium Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 8.882178968 9.018369101 9.125374001 9.09664375 9.111463813 8.551595952 8.460743568 8.389741093 8.716769769 8.851813096 8.923070923 8.795457484 118758980 exaA Organic Remediation Chlorinated solvents Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 9.556946347 9.551229751 9.581080521 9.23447847 9.355827755 9.116889211 9.311308334 9.266150508 9.414721223 9.515512501 9.485505659 9.506021123 209960264 katE Stress Oxygen stress Rhodospirillum centenum SW 8.32273992 8.433304372 8.279712276 8.109695089 7.802082012 8.074074934 8.20036827 8.228739206 8.255344223 8.785166631 8.80263381 8.579433111 118758664 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 9.200044077 9.312495099 9.282792728 9.206047582 8.892060417 9.014563154 9.431640845 9.035342369 9.544553371 8.947362441 9.060796315 8.850894605 229542865 katE Stress Oxygen stress Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 8.411838753 8.593769382 8.507205855 7.821023245 7.895944977 8.214958028 8.147743393 7.913254516 7.890847595 8.160187379 8.043561119 8.422055901 229474692 sigma_24 Stress Sigma factors Planctomyces limnophilus DSM 3776 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces limnophilus; 8.192273186 8.082858824 7.546722551 7.343340305 7.638487249 7.259578656 7.415327781 8.024233214 7.36896088 7.306888239 7.582513701 73660393 arsB Metal Resistance Arsenic Dehalococcoides sp. CBDB1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 9.113240555 9.001877101 9.088164656 8.619117279 8.459115476 8.376651661 8.190260895 8.152312087 8.374155239 8.166856409 8.177181005 8.568267099 94471361 narG Nitrogen Denitrification uncultured bacterium 8.939689234 8.908677454 8.953889423 8.197662737 8.215333647 8.231577285 8.787542907 8.257120248 8.589653646 8.374002894 8.314392358 8.430069071 160362626 pstB Stress Phosphate limitation Delftia acidovorans SPH-1 9.533916529 9.764548883 9.596805284 8.841197277 9.311374944 9.457950026 9.340068463 9.604383114 9.489041583 9.006753482 9.679358093 9.346713725 16308743 AceB Carbon cycling Carbon degradation others Laccaria bicolor superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria; 8.412044863 8.602393895 8.796833173 8.017413318 8.17035295 8.049953651 8.024067755 8.202943328 8.307032964 7.957672457 7.82493417 8.104027842 145309491 gyrB other category gyrB Alicyclobacillus kakegawensis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus; 7.853973413 7.619894184 7.552557037 7.029222763 7.499061235 7.833658775 7.43518595 7.463444615 7.442835161 145251427 phytase Phosphorus Phosphorus utilization Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8.653607183 8.476637492 8.488789785 7.971664449 7.83151841 7.863045289 7.505570255 7.869118695 7.915022323 7.88359322 8.21634549 140844339 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium glutamicum R superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 8.235439342 8.128422277 7.837437176 8.073724199 7.937431647 7.932679382 8.125078825 7.623834095 7.837335206 119671127 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. BH72 8.146686754 8.383978999 8.144778511 8.434200344 8.194396427 8.187132783 8.518329881 8.362834941 8.332679282 8.309083795 8.382478984 114339030 gyrB other category gyrB Maricaulis maris MCS10 8.230750462 8.537874225 8.460443868 8.559765698 8.476654382 8.238352508 8.262493014 8.809632123 8.457497364 8.767028241 8.479699426 8.569836224 161784678 mauAB Organic Remediation Herbicides related compound Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 9.234603611 9.11896328 9.167389881 9.550630391 9.316547777 9.214013987 9.383553621 9.657755169 9.403119805 9.437143562 9.096475117 9.390883588 74056882 dsrA Sulphur sulfite reductase Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 8.50544931 8.403653912 8.530186621 7.953769175 7.860430342 8.148057311 7.805582664 7.63825913 8.068170656 8.040592386 7.977757253 8.091115028 157322646 tutFDG Organic Remediation Aromatics BTEX and related aromatics Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 8.259346665 8.121320432 7.790175848 7.84033885 7.627565728 7.959979995 8.356907571 8.156229273 7.985916648 8.019419454 7.958025876 4538621 cmuA Organic Remediation Chlorinated solvents Methylobacterium chloromethanicum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 8.504937884 8.505235218 8.793978805 8.136167836 8.007583825 8.179343355 7.716696516 7.922407375 8.274106784 7.884206148 7.977753437 8.038341722 268310329 fnr Stress Oxygen stress Thermomonospora curvata DSM 43183 9.34527796 9.429897593 9.412398839 9.506383749 9.286056888 9.053587383 9.472553604 9.402592189 9.125756841 9.12965432 9.25442891 9.293493159 114706526 xylA Carbon cycling Carbon degradation Hemicellulose Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 8.551536593 8.837339044 8.282522245 8.303160234 8.9366775 8.849527945 9.122563248 8.918352284 8.723332191 8.535358161 8.746531689 8.621991487 145237168 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8.614460149 8.695865993 8.997255782 8.365979858 7.840295732 8.088533643 7.978158848 7.920562981 8.035617684 7.744320229 8.264056377 118474021 glnA Stress Nitrogen limitation Mycobacterium smegmatis str. MC2 155 8.61904872 8.381575372 8.683221043 8.480619758 8.659965438 9.010082445 8.738707142 8.595699635 8.322561621 8.681486062 41325302 PobA Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium glutamicum ATCC 13032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 8.451880929 8.202089028 8.381594599 8.507695165 8.225575732 7.878410313 7.982259306 8.332458989 8.352561889 8.480577511 7.741264535 8.333269892 260210610 phoB Stress Phosphate limitation Clostridium difficile CD196 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium difficile; 9.299756192 8.998868069 9.44038301 8.768255559 8.708573883 8.539662644 8.256163231 7.992579466 8.217341275 8.488818134 8.742298696 209545011 fnr Stress Oxygen stress Gluconacetobacter diazotrophicus PAl 5 8.403230846 8.598122102 8.558739393 8.681581936 8.397637762 7.983364575 7.966498353 8.25782321 8.470437569 8.387793463 8.302529926 8.519826826 77969930 silC Metal Resistance Silver Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.338940237 8.241817227 8.286010669 7.871405035 7.966988213 7.990073225 7.757678287 8.147505823 8.185879898 8.270898548 7.956952442 7.880551192 260617799 sigma_38 Stress Sigma factors Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 8.118765448 8.29583746 7.554176995 7.707152391 7.631697924 7.096489429 7.217340452 7.707927183 7.401073191 7.537231162 7.643819271 262199546 sigma_70 Stress Sigma factors Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Haliangiaceae;genus:Haliangium;species:Haliangium ochraceum; 7.913144045 8.174717707 8.184544377 8.178308742 8.029370028 7.939120165 8.468034622 7.996922514 7.976664384 8.106267953 8.184788458 262195882 amyA Carbon cycling Carbon degradation Starch Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Haliangiaceae;genus:Haliangium;species:Haliangium ochraceum; 10.56221684 10.43712695 10.41373138 10.75559283 10.66782388 10.37032505 10.92204095 10.78217385 10.64409908 10.72942308 10.80913161 10.35836344 70734212 CopA Metal Resistance Copper Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.31560817 8.395873069 8.663470382 8.385794754 8.518821591 8.351994146 8.548629221 8.689252944 8.518497316 8.55607102 8.370442519 8.379593878 227113829 AceB Carbon cycling Carbon degradation others Pectobacterium carotovorum subsp. brasiliensis PBR1692 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 8.712143025 8.816191379 8.3831921 8.181693571 8.275044748 7.803781722 8.35288392 7.903991995 7.989667863 8.236082441 157679123 rubisco Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.866473445 8.702972379 8.788912073 8.473150196 8.388350357 8.341506464 8.131046427 8.15697277 8.405565362 8.118451947 8.899232845 8.28666691 34103912 type_III_secretion virulence secretion Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 9.704649151 9.51248947 9.68524652 9.159786566 9.152373208 8.839316575 77959247 SMR_antibiotics Antibiotic resistance transporter Yersinia bercovieri ATCC 43970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 8.909631836 8.9243743 8.795978339 8.758527369 9.005987378 8.705770954 8.911986769 8.975931237 8.835363287 9.094562442 8.931373343 8.273344427 219860831 AceB Carbon cycling Carbon degradation others Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 8.327991164 8.30192633 8.200155474 7.728451873 7.834458479 8.167460832 8.215188879 7.901030484 8.448058422 7.651459325 7.934291542 7.805116353 254228246 type_III_secretion virulence secretion Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.559817792 8.490459272 8.581429726 8.142766948 8.322372886 7.969156716 8.280872668 8.172032087 8.153056233 8.086970381 8.086496932 8.090193468 111020519 nitA Organic Remediation Aromatics Other aromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.540019465 8.452127723 8.418960733 8.465915206 8.559709309 8.390411479 8.568045769 8.929423076 8.557986808 8.745716589 8.539713819 8.701150885 194540305 AceB Carbon cycling Carbon degradation others Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.390613119 8.423260976 7.695494432 7.374318428 7.754818966 8.127071071 7.921383146 8.05677043 7.9283783 7.950184389 7.904376797 14027978 nmoA Organic Remediation Aromatics Nitoaromatics Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 9.285840399 9.1231963 9.395257479 9.102797929 9.006589054 8.696405752 8.794147866 8.91689594 9.040260186 9.033656519 8.710650461 8.801268678 73534359 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.962339607 9.106076921 8.865672507 8.471256391 8.497820727 8.370125666 8.104885447 8.314266348 8.192453658 8.165760714 8.452841625 268590431 MFS_antibiotic Antibiotic resistance transporter Providencia rettgeri DSM 1131 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rettgeri; 7.579345569 6.800565915 7.040041235 6.613898914 7.178777846 7.282862515 6.792641011 6.752478415 1244586 ara_fungi Carbon cycling Carbon degradation Hemicellulose Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 9.252551297 9.0364967 9.336794279 8.502998241 8.412397319 8.563040983 8.670761342 8.46639599 8.414417832 8.257845992 8.41547273 8.692763403 126739174 gyrB other category gyrB Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 9.093816023 9.149072862 9.373148913 8.640409218 8.554740931 8.40848737 8.249606667 8.60317617 8.622943661 8.754087823 8.853477371 198249413 TehB Metal Resistance Tellurium Acidithiobacillus ferrooxidans ATCC 53993 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 8.701181163 8.439844604 8.245957261 8.293575052 8.030060779 8.29881419 8.564761688 8.113692025 8.341984959 8.246946475 8.397989566 7.746047284 119855663 vanA Carbon cycling Carbon degradation Others Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.779663874 7.514483894 7.333116697 7.995408505 7.91741491 7.9257859 7.808933796 7.938728141 222450326 AceB Carbon cycling Carbon degradation others Chloroflexus sp. Y-400-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus; 7.660334861 7.69747192 7.791379305 7.261780445 7.482769366 7.888311828 7.376460016 8.028964888 7.684015143 99083189 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.78224301 7.794248854 7.219517933 6.9148859 7.130572229 6.688455225 6.760510198 7.357511365 6.879768377 6.740271466 7.177278404 110340092 MFS_antibiotic Antibiotic resistance transporter Chlorobium ferrooxidans DSM 13031 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium ferrooxidans; 8.773074767 8.66567298 8.941151385 8.747196891 8.665478758 8.373686837 8.550842579 8.509075851 8.775188544 8.513707584 8.287316761 8.399497635 56178598 obgE Stress Radiation stress Idiomarina loihiensis L2TR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina loihiensis; 9.178335408 9.149589933 9.343792064 8.820174468 8.989955197 9.024821711 8.426141127 8.400312492 8.83455839 9.116065518 8.844861739 39648361 nifH Nitrogen Nitrogen fixation Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.763739586 8.816590443 8.97099446 8.234080747 8.357209694 8.50682651 8.621574754 8.09628872 8.796632976 8.349631741 8.408942702 8.452197632 172072567 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Micrococcus luteus NCTC 2665 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus;species:Micrococcus luteus; 8.826683609 8.793343539 8.978808262 8.202719928 8.208864862 8.269926989 8.601045997 8.144989805 8.612338715 8.272190223 8.099924751 8.30900395 237785018 pstB Stress Phosphate limitation Corynebacterium kroppenstedtii DSM 44385 8.697489331 8.507768848 8.269587583 8.091089394 8.080274907 8.072119744 7.789697422 7.91362933 8.113920105 7.983095482 7.512725276 7.955811432 147886170 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 9.838902008 9.642751617 9.762601641 9.287621712 9.565389656 9.184447567 9.672375969 10.24406541 9.536171784 10.12924084 9.835312025 9.978127549 159029820 ArsC Metal Resistance Arsenic Microcystis aeruginosa PCC 7806 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 8.36245026 8.443342479 8.700203158 8.029561649 8.145654757 7.905842836 7.914815174 7.892691874 8.03868168 7.969759181 7.771174677 8.002682738 109632489 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.501871895 8.84246208 8.44323612 8.028151271 7.723558815 7.628175988 8.077898332 8.013248173 8.076221535 8.324244444 7.713817568 225794164 sigma_24 Stress Sigma factors Acidobacterium capsulatum ATCC 51196 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteria;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 8.61863504 8.636190861 8.515280413 9.11623624 9.049337178 8.777457539 9.150196853 9.101226497 8.737583669 9.184582098 8.916629173 8.707572853 153798811 sigma_70 Stress Sigma factors Actinomyces odontolyticus ATCC 17982 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces odontolyticus; 8.31706562 8.49937854 8.280266566 7.950971413 7.903307551 8.1839953 8.193300607 8.237335213 7.938498465 8.327141548 8.004561709 116698891 nrfA Nitrogen Dissimilatory N reduction Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 8.766764626 8.383585235 8.661629988 8.368867045 8.336262696 8.245898124 8.338066071 8.614446949 8.508342541 8.546117832 8.571485235 8.578277065 108758458 pstB Stress Phosphate limitation Myxococcus xanthus DK 1622 8.566296011 8.317251724 8.511670268 8.309201893 8.435739142 8.086055672 7.964729973 8.371857444 8.237815322 8.377343717 8.139302006 8.100610068 194681977 pap virulence adhesin Proteus mirabilis HI4320 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 8.341437697 8.328224332 8.680906463 8.314672679 8.214644913 8.077357812 7.966993191 7.631681631 8.178407549 7.708471115 7.825864568 7.861087543 262037079 amoA Nitrogen Nitrification superkingdom:Archaea; 9.181473195 9.216607226 9.405469608 8.552825234 8.350888426 8.523284027 8.740803303 8.37391914 8.591387684 8.403862819 8.802110112 8.881512904 225171954 narI Stress Oxygen limitation Desulfonatronospira thiodismutans ASO3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfonatronospira;species:Desulfonatronospira thiodismutans; 9.600509146 9.648016294 8.921748977 8.517206109 8.296904332 8.365650184 9.036501075 158109090 TerD Metal Resistance Tellurium Frankia sp. EAN1pec 8.492746639 8.226709445 8.476931213 7.859861644 7.359317922 7.663656694 7.612662152 7.467001274 8.120564701 7.702762797 7.538960929 7.81789463 66731650 Van Antibiotic resistance other Paenibacillus apiarius superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 8.139240644 7.848951189 8.075482713 7.391709974 7.209142152 7.332483275 7.279353281 7.021100478 7.78979941 7.509008659 7.177212297 7.384496721 46915311 pilin virulence pilin Photobacterium profundum SS9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 9.418542601 9.343000289 9.692011455 8.960146319 8.949682385 8.903538704 8.828723812 8.811749141 8.81677355 8.7954106 8.764163323 9.174975531 239815939 ahpC Stress Oxygen stress Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 8.43398845 8.654863063 7.828724283 8.206444241 8.558074129 8.573052528 7.56484322 8.097039257 7.946308642 8.072876011 37925835 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 9.968512172 9.722160103 9.471907693 9.701775078 9.849999128 9.61321097 10.06459797 10.11817931 9.681477192 9.748677176 9.495275806 113530119 iro virulence Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.454086755 8.577840366 8.94014129 8.986841531 8.781917241 8.437050068 8.59659495 9.265454397 8.579322274 8.962137264 8.577568498 8.964883675 3760223 pcpA Organic Remediation Aromatics Chlorinated aromatics Sphingobium chlorophenolicum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 9.020483078 8.802030568 8.582883075 8.994880101 8.999885513 8.744722846 8.402827054 9.116807878 9.028306633 8.806298705 9.172790935 115362727 glnA Stress Nitrogen limitation Stigmatella aurantiaca DW4/3-1 8.536021608 8.3857914 8.626594308 8.528977037 8.335758123 8.411445588 8.383626022 8.384728391 8.355651596 8.397538201 7.88960571 157912564 sigma_38 Stress Sigma factors Dinoroseobacter shibae DFL 12 8.888707553 8.825550355 8.707540559 9.033565153 9.084864497 9.006183225 9.18417854 8.909032362 9.355540415 9.293847023 150386242 CadA Metal Resistance Cadmium Victivallis vadensis ATCC BAA-548 superkingdom:Bacteria;phylum:Lentisphaerae;family:Victivallaceae;genus:Victivallis;species:Victivallis vadensis; 7.987385137 8.04546586 7.793940936 7.810698913 8.042773041 8.088847169 8.229611122 7.932747761 7.964728295 219563160 nahA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 8.203097439 8.361132996 7.730775305 7.723589746 7.718631981 8.016350713 8.046620443 8.14441141 8.213472397 8.215179183 83594651 fnr Stress Oxygen stress Rhodospirillum rubrum ATCC 11170 8.718012084 8.566006395 8.567704875 8.167266507 8.106243935 7.972904485 8.018434786 8.101845726 8.281116167 7.900611795 8.219544301 8.017415076 74056854 mer Metal Resistance Mercury Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 8.75983232 8.900557224 9.185248885 8.387920985 8.394191252 8.32794997 8.211613365 8.42887424 8.377253319 8.380504065 8.336436269 8.497443505 167750376 pstB Stress Phosphate limitation Eubacterium siraeum DSM 15702 8.747535352 8.760901824 8.995370537 7.334677713 7.411930374 8.089939578 8.035850433 7.560295238 8.172483678 7.767019176 8.08854877 7.781370419 56551299 ppx Phosphorus Phosphorus utilization Zymomonas mobilis subsp. mobilis ZM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Zymomonas;species:Zymomonas mobilis; 8.07585005 7.86889144 8.010946563 7.987663432 7.825485848 7.819141634 8.372588658 8.218450212 8.127178581 8.117857655 83574526 SMR_antibiotics Antibiotic resistance transporter Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 9.689068363 9.658902926 9.722179178 9.094841749 9.415646408 8.99924898 9.078735953 9.134541908 9.148501439 9.475875739 9.284405213 9.374767566 91795567 vanA Carbon cycling Carbon degradation Others Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 8.323679343 8.151302803 8.173021026 8.146456128 8.249550097 7.977774829 8.232568789 7.933957083 8.213626254 8.335710804 8.430119412 117648590 glnA Stress Nitrogen limitation Acidothermus cellulolyticus 11B 9.021914005 9.143999202 9.171904977 8.862380145 8.913079918 8.655567094 8.621413667 8.483095267 8.429931074 8.697464862 8.677305361 8.62287576 45386135 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 8.436191245 8.632795894 8.330435187 7.892482824 8.032090338 8.288854418 8.525201135 8.241258594 8.633329 8.207886494 8.263687102 8.250232752 42627730 catB Organic Remediation Aromatics BTEX and related aromatics Arthrobacter sp. BA-5-17 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 10.96510229 10.85779032 10.77991283 10.25330114 10.32524453 10.07099877 10.25526649 10.24622765 10.55429805 10.39453939 10.5181911 10.48813697 183178268 pstB Stress Phosphate limitation Mycobacterium marinum M 9.5972569 9.534638522 9.421747415 8.831975327 8.750468593 8.841312965 8.618403364 8.487928705 8.850587562 8.671806215 8.697144835 8.877000839 15827767 obgE Stress Radiation stress Mycobacterium leprae TN superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium leprae; 9.607112204 9.69242296 9.735753581 8.898762824 8.886849574 8.79681892 8.564212145 8.821605451 8.750642145 8.886599484 8.784527616 9.189623191 114328503 AmiE Organic Remediation Aromatics Other aromatics Granulibacter bethesdensis CGDNIH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 8.430356563 8.463010782 8.467751219 8.137771241 7.966559752 8.269306372 8.242102404 8.069708359 8.326707309 8.049529039 8.199714035 8.48002825 209552099 ara Carbon cycling Carbon degradation Hemicellulose Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 9.196371786 8.758975147 9.216161741 8.419625206 8.087245467 8.228599504 8.085359939 8.167397733 7.996323538 8.256153656 8.264510666 254271359 phoB Stress Phosphate limitation Methylobacterium extorquens DM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 8.284799796 8.095193993 7.853568514 8.235842517 7.993451899 8.100206594 8.09913362 8.270283204 7.839865782 7019623 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Geobacillus stearothermophilus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.634509623 8.687598265 8.792770891 8.246453017 7.817696104 7.991876316 7.874200941 7.603764536 7.936978341 7.748647533 7.73834495 8.1743302 219965682 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.299248118 8.057918667 8.103071594 7.958516312 7.691997604 7.508486592 7.741708966 7.907538602 7.765034395 7.790202521 7.953921039 158332807 CopA Metal Resistance Copper Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 8.380761472 8.567260394 8.698690666 7.974534037 8.051615247 8.258419735 7.993875675 7.881727463 8.260352282 8.196408964 8.244917107 8.100752559 228570022 endochitinase Carbon cycling Carbon degradation Chitin Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 9.0683852 9.357842364 9.229749155 9.65278784 9.595560732 9.286210776 9.727668441 9.661400552 9.270745209 9.638918295 9.506753102 9.185818495 228275067 oxyR Stress Oxygen stress Capnocytophaga gingivalis ATCC 33624 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga gingivalis; 7.997975099 7.95593265 7.31543539 7.192702961 7.167615581 7.081676704 7.302473793 149822448 nitA Organic Remediation Aromatics Other aromatics Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 8.989768744 8.704811126 8.832922523 8.935936037 8.831073619 8.920159604 8.70566868 8.516082486 8.277967038 8.241445947 8.380968308 158138913 narG Nitrogen Denitrification uncultured bacterium 8.656671414 8.543665016 8.815665141 8.389157531 8.365688837 8.30561915 8.197720072 8.648186319 8.501285152 8.531571938 8.226603725 8.434562709 189423226 hydrogenase Energy process Energy process Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 8.50819366 8.307691552 8.555322774 8.305199567 8.270968013 7.975899279 8.050125237 8.404856296 8.626899478 8.241994842 8.178255932 8.187561007 145556313 BchY other category chlorophyllide reductase Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 8.326788388 8.350725023 7.735677684 8.231053799 8.344705931 8.439665991 8.364666089 8.557618561 7.934618867 8.045353369 7.942470614 198248722 mer Metal Resistance Mercury Acidithiobacillus ferrooxidans ATCC 53993 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 8.137328065 7.991038075 7.842101762 7.861713984 8.211780129 8.097151694 7.830022986 7.996641329 71907872 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 8.270551042 7.94672153 7.835754238 7.876829135 8.225240686 8.185027427 8.222802486 7.897231021 116668784 ArsC Metal Resistance Arsenic Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8.773044201 8.642910655 8.888284155 8.331340954 8.786931479 8.415648592 8.44519945 8.312699609 8.132175383 8.621570309 8.164287703 144900473 type_III_secretion virulence secretion Magnetospirillum gryphiswaldense MSR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 8.661456977 8.368078635 8.627422418 7.839560746 7.766099681 7.700825487 7.84835372 7.678932195 7.760646763 7.778766343 7.789578511 7.807813336 153893454 cellobiase Carbon cycling Carbon degradation Cellulose Opitutaceae bacterium TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 8.403292758 8.677110386 8.309830665 7.935098137 8.297453145 8.856327094 9.22425189 8.974940392 9.031066015 8.604645377 8.695857707 8.940503754 115436968 BADH Organic Remediation Aromatics Other aromatics Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 8.236213483 7.839974417 8.048458306 7.564797008 7.517177662 7.463268691 7.012813379 7.329683449 7.70770592 7.465216543 7.867777426 7.590819464 19073918 PceA Organic Remediation Others Desulfitobacterium chlororespirans superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium; 9.051351737 9.095139842 9.012367082 8.447126178 8.345263213 8.151335832 8.350360959 8.002604208 8.389793173 7.896160927 8.043614719 8.42822132 116608881 pstA Stress Phosphate limitation Arthrobacter sp. FB24 9.027451405 8.884158349 9.132149582 8.650200617 8.626570934 8.741894356 8.341019359 8.439352519 8.541484909 8.498945879 8.501278926 8.653231473 238782896 AceB Carbon cycling Carbon degradation others Yersinia bercovieri ATCC 43970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 8.116752393 8.342889547 8.343690844 7.838762492 8.047692079 7.70779112 8.184089047 8.018220563 7.667605203 7.626300311 7.473177862 282570372 obgE Stress Radiation stress Subdoligranulum variabile DSM 15176 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Subdoligranulum;species:Subdoligranulum variabile; 8.152187705 7.937724402 8.333532706 8.348996976 8.146793367 8.30642557 8.663054094 8.37812494 8.764955622 8.199013781 8.510163527 261868533 obgE Stress Radiation stress Aggregatibacter actinomycetemcomitans D11S-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Aggregatibacter;species:Aggregatibacter actinomycetemcomitans; 10.24470372 10.21880964 10.29983536 10.19664787 10.23257936 10.00889037 10.50477986 10.17396484 10.18644147 10.05711823 10.34788821 10.0767808 163847342 SMR_antibiotics Antibiotic resistance transporter Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 8.061428596 7.979363682 7.773811615 7.92266849 8.070350586 7.978459346 8.020970114 8.021167758 7.864826325 183983100 mer Metal Resistance Mercury Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 10.19853722 10.21065543 10.40873669 9.672807427 9.725589313 9.650378232 9.822104005 9.507918224 10.25170472 9.620721543 9.792224252 9.758083753 59044727 pectinase Carbon cycling Carbon degradation Pectin uncultured bacterium superkingdom:Bacteria; 8.016099445 7.855438061 7.848063972 7.941310328 7.673916063 7.806771907 7.725176875 7.542812521 7.437102381 187926549 CadA Metal Resistance Cadmium Ralstonia pickettii 12J 8.75645062 8.692452563 8.576139702 8.339215587 8.010250649 8.331544598 8.304287036 8.118499721 8.412768953 8.171055551 8.152983534 8.229453724 149389254 cumA Organic Remediation Aromatics Other aromatics Pseudomonas nitroreducens 8.236647362 8.316735835 8.266372525 8.3010677 8.417633493 8.467145052 8.299559166 8.391967573 8.491363922 8.628976391 8.391051321 90424192 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.80516701 8.631290037 8.632192779 8.161917462 8.378713356 8.342684167 8.497106327 8.516810449 8.553328303 8.294126535 8.141553453 56478726 ebdABC Organic Remediation Aromatics BTEX and related aromatics Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 8.165564251 8.332719648 8.164406978 7.950844443 7.968936641 8.659762411 8.745050447 8.416221829 8.510478295 8.510982702 8.630310755 8.452876434 89346327 pcc Carbon cycling Carbon fixation Rhodoferax ferrireducens DSM 15236 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 8.616113597 8.710279304 9.103680373 8.467653093 8.423408928 8.298239 8.446570774 8.393150069 8.384476018 8.405113723 8.335633426 8.342659742 56478152 grpE Stress Heat shock Aromatoleum aromaticum EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 10.02830637 9.862860067 9.777131195 10.40282651 10.14029506 9.636211177 10.15208483 10.15168057 10.08340805 9.942104833 9.604176557 120324182 ahpC Stress Oxygen stress Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 7.776213848 7.561084221 7.507316738 7.611664269 7.54885739 7.881148815 7.715900853 7.430481558 7.530655822 89046651 trzN Organic Remediation Herbicides related compound Oceanicola granulosus HTCC2516 8.230571673 8.407695155 8.49792248 7.632063238 8.095982676 8.013187846 7.92767351 8.089940694 7.868603169 7.862729194 8.039478844 255261823 sigma_70 Stress Sigma factors Thalassiobium sp. R2A62 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Thalassobium; 8.464286156 7.99342261 8.551358187 8.54460578 8.674981511 8.200150056 8.827952478 8.172422283 8.630925093 8.640884687 8.648389376 260174003 hly virulence hemolysin Bacteroides sp. D2 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 8.517452036 8.636361823 8.737280652 8.6555733 8.704500727 8.498421974 8.862852543 9.051969838 8.800232283 9.237547089 9.162963436 8.901214468 227991342 pstB Stress Phosphate limitation Meiothermus ruber DSM 1279 8.216337065 8.195828716 8.305385098 8.337622594 8.511081909 8.154848487 8.323717548 8.7099215 8.711112053 8.723242002 8.544963142 8.316041855 161503128 narI Stress Oxygen limitation "Salmonella enterica subsp. arizonae serovar 62:z4,z23:--" superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 8.323094732 8.693631304 8.840587445 8.494147803 8.688816444 8.624909652 8.62624506 9.021715664 8.611882804 8.804932555 8.652742235 8.599737803 220923098 fnr Stress Oxygen stress Methylobacterium nodulans ORS 2060 9.322269709 9.118041159 9.093588966 8.759504383 8.752958974 8.670881756 8.701902455 8.800926379 8.680859345 8.636371628 8.837952774 8.804794727 86574218 phn Organic Remediation Herbicides related compound Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.268996749 8.528812536 8.484409369 7.827755997 7.956789215 7.987068728 8.026418115 7.853739514 8.048962136 8.288413921 8.085197456 154246624 PobA Organic Remediation Aromatics Aromatic carboxylic acid Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 9.253213367 9.463355442 9.281207028 8.635018443 8.939503199 9.354525377 9.541500957 8.846987458 9.774421392 9.120548831 9.13033906 9.015806851 146411296 CusA Metal Resistance Copper Bradyrhizobium sp. BTAi1 8.303578373 8.0009462 8.347989211 7.599014411 7.414423768 7.927543893 7.985796211 7.464392093 8.285298149 7.731370921 7.696140055 7.745182945 120606320 CadA Metal Resistance Cadmium Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 8.978856336 8.730303019 8.364856243 8.81826965 8.32723897 8.214305045 8.799262482 8.525809517 8.692494139 8.404356424 8.265434674 8.364917245 221736529 ureC Nitrogen Ammonification Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 7.953695442 8.053018963 8.174745149 7.950951233 7.688091639 8.181716412 8.094234116 8.585508182 8.049715393 7.82154602 7.87369703 146279435 CadA Metal Resistance Cadmium Rhodobacter sphaeroides ATCC 17025 8.983490712 8.690014142 8.807694992 8.508127663 8.473135553 8.629609791 8.558848153 8.494910141 8.518351808 8.549950972 8.618546604 8.653405936 253577145 ctsR Stress Protein stress Paenibacillus sp. oral taxon 786 str. D14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 8.396233708 8.304583281 8.224234911 8.051614193 7.967369169 8.001794575 8.127324497 7.962184406 8.273555268 7.831594334 8.163084929 7.947767907 41408737 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 8.046779563 8.115360094 8.126459515 8.119562292 8.211228754 8.350071837 8.354143883 8.592383279 8.32940395 8.603456933 8.363078635 8.500641531 121998964 CopA Metal Resistance Copper Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 8.758189437 8.658272061 8.498485777 8.11327494 8.246479883 8.13493534 8.257171012 8.237451554 8.515048221 8.289098321 8.388644996 8.553900596 17429262 PobA Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 8.97787062 9.179383072 9.166532677 8.957425926 9.322909303 9.035727503 9.069463447 9.404665679 8.829554533 8.998768027 9.012679242 9.206326355 17547421 cspA Stress Cold shock Ralstonia solanacearum GMI1000 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 8.0124669 7.929713659 7.790146306 7.289422718 7.441203679 7.687743662 7.577455439 7.667485222 7.435901396 98978105 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Sphingopyxis alaskensis RB2256 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 7.404683353 7.49758138 7.400369272 218512672 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium etli 8C-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.331391177 8.765961873 8.686897578 8.28786704 8.20727071 8.251214663 8.339564297 8.081585035 8.519863144 8.312760232 8.376067811 8.280107848 160895948 silC Metal Resistance Silver Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 9.462439008 9.315735313 9.296304992 9.328133155 9.342685209 9.345129132 9.369140016 9.179323139 9.601944571 8.93272207 9.139944981 9.101556171 76163896 atzA Organic Remediation Herbicides related compound Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 7.732400519 7.675445229 8.068347441 7.684451441 7.900154607 8.01165819 7.822853172 8.024680714 7.942381662 262076772 amyA Carbon cycling Carbon degradation Starch Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Haliangiaceae;genus:Haliangium;species:Haliangium ochraceum; 9.491881292 9.527418958 9.405503536 9.277901225 9.190194428 9.052668692 9.304977196 9.122747402 8.932835093 9.398475669 9.427852693 8.988102553 254353051 cap virulence capsule Legionella drancourtii LLAP12 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella;species:Legionella drancourtii; 7.136694482 6.753312941 7.003644115 6.627484568 7.391133414 6.976245769 6.864377805 160898508 ChrA Metal Resistance Chromium Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 9.164759749 9.300033795 9.411387311 8.81977108 8.865687617 8.788880635 8.874599913 8.858871203 8.632262016 8.966470909 8.83051871 9.080112028 94471255 narG Nitrogen Denitrification uncultured bacterium 8.154039917 8.274995469 8.319613231 7.994718646 7.960424679 7.811763309 7.332992753 7.840987375 7.785363214 7.793853328 7.519253929 7.682170124 156528074 amyA Carbon cycling Carbon degradation Starch Vibrio harveyi ATCC BAA-1116 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 9.27778013 9.09665501 9.005232506 8.305241578 8.259787273 8.493395572 8.558207805 8.325378393 8.708483208 8.257166314 8.655666376 8.14567759 154247266 CadA Metal Resistance Cadmium Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.533049636 8.530120683 8.31993982 8.503289202 8.567519254 8.440978053 8.490860057 8.643644995 8.702653447 8.683518985 8.580114772 8.382855922 159140729 B_lactamase_C Antibiotic resistance Beta-lactamases Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.385213001 8.509118434 8.488144558 8.030553085 8.264336332 8.512667245 8.219682305 8.244480156 8.140583318 8.313448464 8.48791687 8.377189215 167728823 ArsA Metal Resistance Arsenic Halobacterium salinarum R1 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halobacterium;species:Halobacterium salinarum; 8.484492297 8.20825517 8.401628896 7.729938564 8.049664354 8.121938603 8.311523513 7.25851287 8.462455766 7.425450097 7.599921513 7.746174297 62468078 bco Organic Remediation Aromatics Aromatic carboxylic acid uncultured bacterium superkingdom:Bacteria; 8.818371595 8.723350406 8.384952256 8.630817242 8.641729116 8.66124507 8.998959641 8.724113988 8.718395824 8.262827542 8.557102603 8.083536364 6014584 dsrB Sulphur sulfite reductase Solar Lake Mat Clone22 superkingdom:Bacteria; 7.938911231 8.028096654 7.702380813 7.49575602 7.378703947 7.598987243 7.354287817 8.111180542 7.462073029 7.467190799 7.303903839 94502863 B_lactamase_C Antibiotic resistance Beta-lactamases Enterobacter cloacae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 8.135408048 7.964923045 8.409441526 8.323477444 8.214948162 8.266817375 8.485775557 8.616551532 8.516254848 8.665993458 8.725064902 8.851780281 118619261 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 9.098352248 9.255967821 9.297632622 8.568114314 8.530252602 8.499197976 8.680610935 8.600033703 8.552397991 8.662523318 8.488593753 8.782795187 254284208 pstB Stress Phosphate limitation gamma proteobacterium NOR51-B 8.648742292 8.295254975 8.655980647 7.901930123 7.950980701 7.835573236 8.048944618 7.898858772 8.02900974 7.631365692 7.731482166 7.844993237 85104727 amyA Carbon cycling Carbon degradation Starch Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 9.275888902 9.287756089 9.388843083 8.666984662 8.644145123 8.505514292 8.673531806 8.594116495 8.640710973 8.653908189 8.764903575 8.837623842 88782973 sigma_24 Stress Sigma factors Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 8.188814318 8.073286626 8.447083771 7.639352469 7.198795497 7.390562251 7.102453593 6.910918787 7.67492759 7.332344675 7.154041873 151248 dehH109 Organic Remediation Chlorinated solvents superkingdom:Bacteria;phylum:Proteobacteria; 8.426106248 8.381374152 8.679476713 8.049421978 7.738357293 7.791895974 7.786139511 7.597008105 7.961361129 7.684585428 7.764479954 7.946091334 226304230 bphF1 Organic Remediation Aromatics Polycyclic aromatics Rhodococcus erythropolis PR4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 9.401096273 9.229393303 9.028001114 8.452300414 8.2186998 8.667879317 8.918295304 8.267822363 8.869706884 8.893690612 9.006230559 8.622358855 198262073 CusA Metal Resistance Copper gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.626543682 8.523676893 8.823159273 7.953432705 8.067861271 8.257522308 8.143490286 7.74787855 7.918618722 8.000860403 8.362546923 116670783 hrcA Stress Heat shock Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.610419864 7.646456725 7.501833079 7.827203364 7.586881883 7.494465011 204323662 cda Carbon cycling Carbon degradation Starch Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433 8.383436564 8.427090844 8.562475604 7.868841248 7.607365993 7.651730783 7.507212984 7.399837182 7.673542996 7.633199848 7.797732646 84686857 SMR_antibiotics Antibiotic resistance transporter Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.387525774 8.430567213 8.352891625 8.233791345 8.276029705 8.167254513 7.817466782 7.847510937 8.163339518 7.973032983 8.038333859 7.951035457 84392934 mer Metal Resistance Mercury Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 8.096215674 8.455331875 7.785797276 7.557572826 7.581194462 8.096613327 7.618855197 8.310049755 7.714503365 8.095018621 7.930679478 62468052 bco Organic Remediation Aromatics Aromatic carboxylic acid uncultured bacterium superkingdom:Bacteria; 9.15562391 8.847772608 9.162036484 8.147285967 8.227968617 8.230532577 8.302922954 8.111261331 8.475853867 8.175951355 8.137299749 8.527178468 42523321 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bdellovibrio bacteriovorus HD100 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 8.10914651 8.203769823 7.626194054 7.850243071 7.667019569 7.494175871 7.90525272 8.004677149 8.156755855 7.755788367 7.744867622 113732401 tfdA Organic Remediation Aromatics Chlorinated aromatics Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.766819986 8.921830434 8.531683786 8.464169451 9.02691231 9.440613971 9.33520466 9.309665884 9.327672962 8.95413543 9.487109867 8.856328162 42558534 CadA Metal Resistance Cadmium Acinetobacter sp. B0064 8.104993882 8.182486003 7.505384467 7.514637938 7.680068937 7.419424913 7.653250241 7.986757 7.675210943 7.57994322 7.730517995 169856907 glx Carbon cycling Carbon degradation Lignin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 8.583463661 8.479219984 8.623487746 8.231956866 8.295676008 8.354252175 7.891886309 8.130878259 8.263658447 8.622031293 8.269229151 71023925 ureC Nitrogen Ammonification Ustilago maydis 521 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Ustilaginomycetes;order:Ustilaginales;family:Ustilaginaceae;genus:Ustilago;species:Ustilago maydis; 9.116853499 9.093538838 9.332503352 8.813538531 8.799225918 8.594181277 8.545479064 8.459069093 8.709190757 8.666334273 8.49305816 8.816116888 83316708 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.084927524 9.094377589 9.242411703 8.610463028 8.330951742 8.584352341 8.458704332 8.189110693 8.271736492 8.240425138 8.615616045 104780947 CopA Metal Resistance Copper Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 9.737809099 9.629288176 10.14378345 9.874081383 9.786455095 9.454555495 9.541351793 9.82075287 9.450817456 9.910263092 9.798924018 9.775660528 99083099 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.199144287 8.129667399 8.23343643 7.423560512 7.359982361 7.319071229 7.116657115 7.082749645 7.577823439 7.315696878 7.118235021 7.459951397 56180474 ppx Phosphorus Phosphorus utilization Idiomarina loihiensis L2TR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina loihiensis; 9.04608969 9.04139681 9.230194052 8.432051943 8.34488421 8.618144289 8.800980134 8.307049306 8.622791167 8.460025273 8.626896725 8.606298028 38637875 napA Nitrogen Dissimilatory N reduction Cupriavidus necator superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 9.660214935 9.614786903 9.809693906 8.980797662 8.947877894 8.922526998 8.78192302 8.874309601 8.705205337 9.003548486 8.867372632 9.159374108 32308065 narG Nitrogen Denitrification uncultured bacterium 8.510819286 8.651445339 8.792310495 8.241300051 8.130467209 8.464526034 8.546521448 8.466392589 8.598824395 8.415708693 8.6781497 8.312492054 115255880 glnA Stress Nitrogen limitation Rhizobium leguminosarum bv. viciae 3841 7.962327375 8.014306376 7.648548529 7.601531862 7.54662037 7.148282186 7.469511674 7.85437483 7.682050925 7.526555564 7.605773882 145306288 mer Metal Resistance Mercury Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 9.103614981 8.731950517 8.843806068 8.579225889 8.391625478 8.44927759 8.678654914 8.28607502 9.009395993 8.548337706 8.589769995 8.340677342 52213479 trzA Organic Remediation Herbicides related compound Burkholderia pseudomallei K96243 10.43864411 10.48456447 10.64922981 9.767727129 9.348404141 9.496297839 10.16164316 10.08674232 10.118946 10.3238004 10.10876853 281325602 sigma_70 Stress Sigma factors Burkholderia sp. CCGE1001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.930748739 8.88601975 9.102867784 8.573882356 9.309093355 9.453751727 9.215660584 9.409895917 9.081271556 9.078856378 9.048802107 119391655 narG Nitrogen Denitrification Rhodococcus sp. D6-28 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.448444693 8.121189919 8.334610079 7.954572689 7.72271537 8.197599901 8.129678528 7.729188235 7.860152562 7.800740522 254521974 B_lactamase_C Antibiotic resistance Beta-lactamases Stenotrophomonas sp. SKA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 8.353175194 8.23966309 8.231800989 8.180740859 7.950298652 7.885176805 7.719605708 7.95470151 8.212930644 258528803 xylA Carbon cycling Carbon degradation Hemicellulose Dickeya dadantii Ech586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 8.754668307 8.677847127 8.924037231 8.947782619 9.116050901 8.512481766 152982618 iro virulence Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 8.771569841 8.45375606 8.489451568 8.112317928 8.021762459 8.041065185 7.675364096 7.82205893 8.346695033 7.89094161 8.000934986 8.03960118 226939584 ppk Phosphorus Phosphorus utilization Laribacter hongkongensis HLHK9 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Laribacter;species:Laribacter hongkongensis; 8.111198581 8.276707055 8.263694952 8.150263101 8.095552225 8.006886381 7.954319832 8.37601749 8.328300574 8.380666594 8.18879225 8.157025998 116222446 exochitinase Carbon cycling Carbon degradation Chitin Solibacter usitatus Ellin6076 8.059762666 8.258110654 8.345984304 7.887044616 8.054920407 8.134333513 8.147213845 8.082701997 8.145342934 8.30846303 163781987 pstA Stress Phosphate limitation Hydrogenivirga sp. 128-5-R1-1 7.332178824 7.452843163 7.684773169 8.08428706 7.709811768 7.243846717 7.874720162 225872965 sigma_24 Stress Sigma factors Acidobacterium capsulatum ATCC 51196 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteria;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 10.62255249 10.83083753 10.75233032 9.828311369 9.694624224 9.667422435 167349638 vanA Carbon cycling Carbon degradation Others Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 9.494549931 9.187731909 8.684248615 9.747807523 9.738194965 9.439764564 9.691451313 9.535701198 9.378318105 9.527797568 9.494797889 9.509174674 1001193 pstB Stress Phosphate limitation Synechocystis sp. PCC 6803 8.603011728 8.931730744 8.98877749 8.083948245 7.866294329 7.973718872 7.823227961 7.803889894 8.066733107 7.834258448 7.719757371 8.081241963 190996222 cytochrome Energy process Energy process Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.954263429 9.055710255 9.023407138 8.477167855 8.519654761 8.757884295 9.200455722 8.866180362 9.3830804 8.591306082 8.215303861 8.505040775 163813348 SMR_antibiotics Antibiotic resistance transporter Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 9.389718572 9.256951763 9.608246842 8.948327919 8.91912305 8.770369609 8.981083348 9.429300872 9.228075859 9.315117183 9.280553195 9.44385758 237797965 katE Stress Oxygen stress Pseudomonas syringae pv. oryzae str. 1_6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 8.341842354 8.127580626 7.080037988 6.90769319 7.150856096 6.713181941 7.576405238 157273328 sigma_70 Stress Sigma factors Candidatus Chloracidobacterium thermophilum 8.822910469 8.597430175 8.552049801 7.89944256 8.046387199 8.059638335 7.829823853 7.910258388 8.106392841 7.842561785 8.005273616 8.12368631 224948769 clpC Stress Protein stress Clostridium methylpentosum DSM 5476 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium methylpentosum; 8.820744641 8.659995652 8.563444884 8.199761278 8.329330659 8.144494925 8.454184471 8.438759295 8.663439116 8.758113716 8.897626294 8.749772629 89274948 bphA Organic Remediation Aromatics Polycyclic aromatics Rhodococcus sp. R04 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.593744498 9.029797498 9.091858441 8.420798707 8.400729788 8.429502481 8.798155736 8.439212972 8.628252825 8.293995438 8.3533926 8.399140547 167568470 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Burkholderia oklahomensis C6786 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia oklahomensis; 9.23391366 8.908423893 8.929574305 8.907959141 8.848512655 8.760553805 8.53980592 8.906904052 8.89286615 8.622081505 8.725028749 8.840796735 39578179 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.949283721 8.872495217 8.92225623 8.644165201 8.502680248 8.548112492 7.98957168 8.380263931 8.244684881 8.244747019 8.451070663 8.641958032 195931869 Catechol Organic Remediation Aromatics Other aromatics Gordonia amicalis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 8.513160604 8.379127189 8.491087152 8.610709775 8.512481797 8.570043459 8.320327854 8.916587538 8.553817331 8.503096736 8.550738242 8.137546337 182413603 sigma_24 Stress Sigma factors Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 9.340918738 9.137803286 9.001513885 8.696073777 8.472344056 8.555955599 8.499620407 8.2849073 8.53121394 9.004194408 9.25127788 9.056534406 260579371 AceB Carbon cycling Carbon degradation others Corynebacterium jeikeium ATCC 43734 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 8.43379968 8.166058603 8.647515141 8.111872559 7.834659958 7.814929479 7.751354712 7.618569863 8.349745838 7.765231505 7.630327448 7.838938822 112463765 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.184495834 9.065051433 9.123810081 8.451204399 8.422245449 8.534489225 8.580746513 8.583014865 8.321780172 8.719387263 8.599531698 8.895704685 119456978 TerD Metal Resistance Tellurium Lyngbya sp. PCC 8106 8.518907336 8.311890048 8.328394739 8.092084467 8.042411218 7.755600969 7.747103652 7.848528643 7.863867485 7.763339367 7.686166958 7.846879563 167346814 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.621342238 8.575695059 8.40233241 7.86806329 7.722248968 8.038610711 8.178254732 7.544001119 8.392508038 7.548473987 7.87603775 7.710599008 49530746 pimF Organic Remediation Aromatics Aromatic carboxylic acid Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 9.460854642 9.282219144 8.94561164 9.709693112 9.846766491 9.947596952 9.697005988 9.805358935 9.444016641 9.657965531 9.591823363 8.996757883 28416421 phenol_oxidase Carbon cycling Carbon degradation Lignin Phanerochaete chrysosporium superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 8.410899619 7.749806788 8.169150047 7.21568032 7.458199018 7.580020602 7.452694357 8.057219618 7.744819385 7.596733922 7.665125884 209401864 narG Nitrogen Denitrification uncultured bacterium 8.788969885 8.173270204 8.30885066 7.913350472 7.803274265 7.948747016 8.022339129 7.945752368 8.18340246 7.894265739 7.855685274 7.81227554 88779207 ureC Nitrogen Ammonification Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 8.088160387 8.302424011 8.035135127 7.788960337 7.646297172 7.822515513 7.640838126 8.101901682 7.61183279 7.649664566 7.399829016 1652379 ZntA Metal Resistance Zinc Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 9.123338688 8.775588457 8.927759371 8.5452601 8.351858739 8.197616931 8.161045485 8.07391758 8.51019896 8.13980848 8.060350258 8.412561878 56708990 fnr Stress Oxygen stress Ruegeria pomeroyi DSS-3 9.064647306 8.990863997 8.771734952 8.796090612 8.764562062 8.839496997 8.989163358 9.019141192 8.986046789 9.139048756 9.055888429 9.087530461 222106587 CadA Metal Resistance Cadmium Agrobacterium vitis S4 8.653209869 8.609685804 8.371777982 8.253502993 8.399386911 8.395150816 8.512760644 8.450866846 8.471124056 8.321280589 8.452130428 8.378019603 27351209 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.747554153 8.568307387 8.469197657 9.05601523 9.324655371 8.95688508 9.138779632 9.479695683 9.04633079 9.370026016 9.24601044 9.350062014 29893189 alkJ Organic Remediation Other Hydrocarbons Rhodococcus ruber superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.706905723 8.209230132 8.76107455 8.212465779 8.173867596 7.9364862 7.797417493 8.241634891 8.251214254 8.321344359 8.138281876 8.267008616 91777976 tfdA Organic Remediation Aromatics Chlorinated aromatics Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.417585873 8.444824848 8.468978925 8.248381863 8.216028024 8.150077029 8.353174855 8.49546129 8.118693334 8.130630301 8.054007996 71159022 Xamo Organic Remediation Other Hydrocarbons Nocardioides sp. JS614 8.309242027 8.472562223 8.477729591 8.102106901 7.897915469 7.934971397 8.007276284 7.728143724 8.052532612 7.623458483 7.625014059 7.772518777 83575495 fnr Stress Oxygen stress Rhodospirillum rubrum ATCC 11170 8.851393841 9.279672404 8.982062928 8.52271809 8.46858848 9.068842375 9.232876519 9.008002442 8.843795516 9.017375599 9.240189798 38232603 ureC Nitrogen Ammonification Yersinia intermedia superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia; 7.517937378 7.597359372 8.284383727 8.111478607 7.562821199 8.419171897 7.658215646 7.286538873 7.603517019 108460736 sigma_24 Stress Sigma factors Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 9.133664123 9.031863263 8.679911465 8.596437157 8.505930662 8.349273417 8.260377419 8.27564966 8.509614256 8.115433114 8.173952412 8.41487044 158444004 bglH Stress Glucose limitation Faecalibacterium prausnitzii M21/2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Faecalibacterium;species:Faecalibacterium prausnitzii; 8.523586142 8.897397746 8.742842269 8.241298401 8.462947564 8.636394894 8.381187529 8.092742804 8.336638365 8.569862789 8.709984541 8.258062265 255707096 nirS Nitrogen Denitrification uncultured bacterium 9.644577836 9.520082464 9.325999176 8.932396629 8.61520429 9.133166333 9.653739168 9.126956048 9.292813053 9.077255033 9.156289856 9.078847863 119190135 grpE Stress Heat shock Coccidioides immitis RS superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides immitis; 8.20292446 8.46285077 7.595054371 7.812104189 7.633498937 7.991329651 7.76015072 8.114483997 213956029 pcc Carbon cycling Carbon fixation Propionibacterium acnes SK137 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 8.151584718 8.369924005 8.436113591 8.616772938 8.665089044 8.762486808 8.638035171 8.989640645 8.694149434 8.906917186 8.869471361 8.805825948 239816950 iro virulence Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 8.399791661 8.258110654 8.565364898 7.926942971 8.232184467 8.328980043 8.312964542 7.334297053 8.339831386 7.886716026 8.034143832 7.920849389 119862699 sigma_70 Stress Sigma factors Psychromonas ingrahamii 37 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas;species:Psychromonas ingrahamii; 8.006826748 7.717112339 7.262587956 6.879345299 212688034 atzA Organic Remediation Herbicides related compound Providencia alcalifaciens DSM 30120 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 8.095072337 8.06266673 7.925664934 7.904642078 7.919531722 7.299989799 7.662405052 7.828075683 7.954102429 7.937638177 7.553307761 4104775 nagG Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas stutzeri superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.335906603 8.123920221 7.882783119 7.625522779 7.456390422 7.077413034 7.535152567 7.68998249 7.559133261 7.634123196 118571428 bphC Organic Remediation Aromatics Polycyclic aromatics Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 8.638468942 8.651973948 8.830314228 8.400781847 8.403212756 8.888498453 7.964202603 8.280834026 8.585752396 8.310496697 8.46789378 119716135 hrcA Stress Heat shock Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.769130218 8.81325927 8.458486205 8.590863931 8.577352525 8.356795059 8.636633698 8.903308395 8.721347588 8.422124372 8.754495162 262208607 iro virulence Comamonas testosteroni CNB-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.148986565 7.965720875 7.880913695 7.882593983 7.742482431 7.375784563 8.05222714 7.884934371 7.65775427 7.70068684 7.846244603 254451280 AceA Carbon cycling Carbon degradation others Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 8.376653524 8.1840947 8.491696615 8.089132769 8.224617636 8.17279211 8.02372956 8.385608414 8.154540987 8.285615424 8.357373061 8.408445816 146343491 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 9.003762145 8.925569715 8.71250648 8.841145455 8.716617803 8.458904516 8.784959414 9.256892109 8.854564553 8.946728366 8.698610367 8.790353238 229474119 sigma_24 Stress Sigma factors Planctomyces limnophilus DSM 3776 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces limnophilus; 8.000294663 7.866718391 7.157384273 6.712253362 260220977 ppk Phosphorus Phosphorus utilization Curvibacter putative symbiont of Hydra magnipapillata superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 8.725745854 8.759767998 8.7831622 8.311711902 7.971029762 8.297568725 7.957896729 7.726969091 8.266646717 8.273802466 7.877717934 8.370402439 237502006 sigma_32 Stress Sigma factors Tolumonas auensis DSM 9187 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Tolumonas;species:Tolumonas auensis; 8.391392421 8.082992145 7.745155026 7.908566723 8.001452549 7.471545176 7.399519019 7.437566448 7.648129281 7.852373534 145554364 alkB Organic Remediation Other Hydrocarbons Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 8.26563133 8.178611764 8.053153395 7.781946463 7.964019238 7.61870045 7.684447307 8.14517007 8.301847279 7.982269953 7.919073303 7.992706715 169289 mnp Carbon cycling Carbon degradation Lignin Phanerochaete chrysosporium superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 9.166027444 9.156929439 9.159353343 8.868606677 9.110826819 8.891347829 8.982100471 9.07046189 8.926262453 9.01070787 8.871098757 8.575615614 88778327 Arylest Organic Remediation Aromatics Other aromatics Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 8.785932903 8.521546606 8.373150894 8.720324977 8.776325031 8.401362846 8.625914618 9.148118313 8.797201525 8.965629731 9.069294588 8.974862819 167350105 trzE Organic Remediation Herbicides related compound Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.511867605 8.584520413 8.377078033 8.487495111 8.494441291 8.337924816 8.509970647 8.630349986 8.663487826 8.708642571 8.786848198 8.692309496 15612976 amyA Carbon cycling Carbon degradation Starch Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 9.382240419 9.197597099 9.322299774 8.556274606 8.428245299 8.625054209 8.09263926 7.953391482 8.366947018 8.342536518 8.52464296 238765168 cda Carbon cycling Carbon degradation Starch Yersinia kristensenii ATCC 33638 9.293230776 9.250204986 9.285741153 8.950511262 8.859079206 8.742656994 8.673718184 9.125412852 8.551130734 8.984683724 9.081885116 9.120976496 238755712 proV Stress Osmotic stress Yersinia ruckeri ATCC 29473 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia ruckeri; 8.7272957 8.731263484 7.900722867 7.893275479 8.319077917 8.214524178 8.024548853 8.266222687 7.914068903 8.108209321 7.773938903 109452443 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.381910089 8.148648952 8.214295054 8.201270501 8.093646504 8.040527625 8.341501933 8.120494879 8.366703983 7.977459246 154243817 CadA Metal Resistance Cadmium Xanthobacter autotrophicus Py2 8.219606514 8.115955689 7.623027617 7.488712255 7.560204614 7.079521962 7.325919844 7.324623804 7.211429407 72383743 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.200207261 8.119743163 7.581210738 7.685980809 7.815310125 7.810955131 7.71955358 8.003609229 7.531921119 7.580885835 7.420923592 156528610 Arylest Organic Remediation Aromatics Other aromatics Vibrio harveyi ATCC BAA-1116 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 8.316028509 8.456494003 8.035654251 8.212409842 8.654403661 8.29529621 8.472472013 8.600070548 8.502921399 146406180 nmoA Organic Remediation Aromatics Nitoaromatics Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.404062245 8.164560042 8.352327583 7.848905668 8.178016283 8.311479212 8.246019708 8.075103355 8.501409195 8.201519088 8.456944612 8.497208116 150955610 narG Nitrogen Denitrification Klebsiella pneumoniae subsp. pneumoniae MGH 78578 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 9.037534517 8.867067125 9.045935536 9.050334135 8.934711921 8.659436144 9.156535238 9.050569881 8.8949633 8.91609453 9.044447224 8.7574353 134300117 cap virulence capsule Desulfotomaculum reducens MI-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum reducens; 8.249158781 8.076682759 7.515344896 7.333679403 7.468555855 7.085607113 7.636885159 7.469648426 7.106293227 7.346726516 261345447 sigma_24 Stress Sigma factors Providencia rustigianii DSM 4541 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 9.02474594 8.623696027 8.526507393 9.245280169 9.096022818 8.480255557 9.526989414 8.814205423 9.361369274 9.138071353 9.112562596 154685746 glnR Stress Nitrogen limitation Bacillus amyloliquefaciens FZB42 8.128956489 8.215270322 8.385281755 7.603763649 7.379788359 7.4776454 7.183036645 7.071980626 7.767351811 7.286764132 7.278434594 7.623968639 226200258 iro virulence Burkholderia pseudomallei Pakistan 9 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 9.159141196 9.204977633 8.936307719 9.135415525 9.476188668 9.811961148 9.50939148 9.848931867 9.565016985 9.567762242 9.682658381 9.440000652 242240710 hly virulence hemolysin Dickeya dadantii Ech703 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 8.302923185 8.553639914 8.558929319 8.056100227 7.931507027 7.592751796 7.602460185 7.682938965 7.87098163 7.759925429 7.360302128 8.302354797 114763950 ureC Nitrogen Ammonification Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 9.964222977 10.21963989 9.969834354 9.532266034 9.752994775 10.24445262 10.39411679 10.40295339 10.16337769 10.57498859 10.44706172 10.59795414 45386179 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 9.632615613 9.444090533 9.457676478 9.794179935 9.953108665 9.838131811 9.714291207 10.44069461 9.384180453 9.928496453 9.616008341 9.979129775 167574030 katE Stress Oxygen stress Burkholderia oklahomensis C6786 8.926720265 8.904972942 9.175827832 8.602726122 8.40542087 8.334230949 8.616220241 8.691951453 8.691509663 8.556701123 8.63567001 8.773530793 153888442 CopA Metal Resistance Copper Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.442064398 8.406397725 8.239596674 8.566081071 8.76772693 8.348228686 8.186703073 8.568188543 8.281877194 8.341983883 8.429363953 8.676998611 218510508 AceA Carbon cycling Carbon degradation others Rhizobium etli Brasil 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.714764418 8.536324341 8.659693181 8.280187028 8.282429536 8.509289434 8.648315339 8.703376751 8.65355361 8.612336049 8.681452916 8.775806138 150014758 rubisco Carbon cycling Carbon fixation uncultured gamma proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.773917991 8.983176993 9.087068785 8.843265614 8.926164719 8.690305608 8.398115524 8.794160523 9.097036768 9.122399003 152997917 pmdAB Organic Remediation Aromatics Others Marinomonas sp. MWYL1 9.405857469 9.113220515 8.898060479 9.019769173 8.797498255 8.746021084 8.798702445 8.785453323 8.544172224 8.86711565 8.843220467 9.136476921 3378445 xylJ Organic Remediation Aromatics BTEX and related aromatics Novosphingobium aromaticivorans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 8.831088847 8.908634054 8.622237096 8.431324248 8.276437129 8.337472093 8.411861064 8.043250079 8.768976402 8.291412514 7.875746175 8.278120352 255059040 amyA Carbon cycling Carbon degradation Starch Geobacter sp. M18 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 9.097146079 9.314329664 9.254513474 9.652285335 9.608466844 9.253597367 9.581452753 9.445325677 9.33635597 9.381848502 9.149517447 9.143120836 126736475 bclA Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. CCS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 9.901055055 9.398815973 9.60445493 9.461809523 9.055056092 8.76390914 9.251750394 9.239016903 9.22305699 9.484801759 9.592684572 9.193176164 220905138 CopA Metal Resistance Copper Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 9.276650249 9.128618293 9.084826682 9.35410827 9.316924214 9.134269536 169765942 nahA Organic Remediation Aromatics Polycyclic aromatics Aspergillus oryzae RIB40 9.178795896 8.723721315 8.952179009 8.131591627 8.101725057 8.246950976 8.348106044 8.395048307 8.401246012 8.564019346 8.214030085 118171974 CDH Carbon cycling Carbon degradation Cellulose Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.859993756 8.89568702 8.638392902 8.764742223 8.718920744 8.686684203 8.489785824 8.767061059 8.717686447 8.705724166 8.70630206 8.702886163 45386231 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 9.494199286 9.260453827 9.087926924 9.098471028 9.29863318 9.328923246 8.982161739 9.211490799 9.168263399 9.061208261 9.231364191 9.067993634 71279822 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Colwellia psychrerythraea 34H superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Colwelliaceae;genus:Colwellia;species:Colwellia psychrerythraea; 9.118490634 8.928086161 8.85036018 8.738389999 8.770850057 8.556156354 8.632584857 9.088657372 9.028553669 9.020561272 8.956052796 8.686092561 169239146 chnB Organic Remediation Other Hydrocarbons Mycobacterium abscessus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.618777675 8.797538242 8.666409431 8.445493943 8.430387574 8.392256296 8.457581549 8.568824703 8.577672582 8.944542447 8.876142306 8.728130489 145213762 nagI Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.839704284 8.263820021 8.405224585 9.02963751 8.798979626 8.764473788 9.000314221 8.773732746 8.501952228 8.884812637 8.901279469 8.44519489 33385641 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.754851993 8.622450079 8.837975136 8.133919011 8.157964323 8.157498597 8.06091511 7.77813632 8.395031293 8.056114329 7.890338428 8.336488468 167593558 phoA Stress Phosphate limitation Heliobacterium modesticaldum Ice1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Heliobacteriaceae;genus:Heliobacterium;species:Heliobacterium modesticaldum; 8.019985101 8.201951105 7.384002239 7.310022245 7.15092269 254482609 oxyR Stress Oxygen stress marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 9.024527297 9.585003112 9.292136678 8.583537924 9.760648009 9.733983571 10.01659776 9.729867809 9.788290721 9.477323113 9.846810373 218751028 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.557699551 7.359439184 7.744927287 7.853137002 7.584132309 8.182896925 7.400942218 7.408579154 7.496591171 158138887 narG Nitrogen Denitrification uncultured bacterium 8.500788956 8.174327471 8.590915528 8.004654502 7.835458917 8.017830621 7.847097831 7.989786155 7.922369342 8.147776913 8.0665716 8.155249713 241880391 hydrogenase Energy process Energy process Desulfovibrio vulgaris RCH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 8.313706736 8.422013317 8.214144064 8.932828638 8.755185979 8.430124323 8.678547332 8.537652616 8.729946001 8.600593631 8.507580773 8.063999332 158315832 pcc Carbon cycling Carbon fixation Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.927118598 9.381700534 9.229295962 9.130208509 9.240463411 9.342682373 9.280607813 9.694582352 9.270931925 9.831890777 9.709788484 9.492085827 110818906 benAB Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 9.0207408 9.497004036 9.276067935 9.632622216 9.807557919 9.613265713 9.667280717 10.05773634 9.616558414 10.20443908 9.693428289 9.651915856 86608713 pilin virulence pilin Synechococcus sp. JA-2-3B'a(2-13) superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 9.419859303 9.420720383 9.223186228 9.160116344 9.278329669 9.264379118 9.087462836 9.439850736 9.073184443 9.227246902 9.1855396 9.369002045 2983829 pilin virulence pilin Aquifex aeolicus VF5 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Aquifex;species:Aquifex aeolicus; 8.275261518 8.136613436 116620373 pectinase Carbon cycling Carbon degradation Pectin Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 9.125571316 8.838745966 8.994500801 8.277488167 8.171077141 8.312882568 8.590606282 8.144750965 8.081400429 7.978333375 8.404800843 146341422 nmoA Organic Remediation Aromatics Nitoaromatics Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.459119993 8.529440099 8.285532358 7.930175848 8.107668669 8.650259608 8.831145358 8.661305107 8.445413887 8.570591168 8.615314654 121998625 obgE Stress Radiation stress Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 9.112298269 9.055678706 8.486810344 8.721539657 8.652754514 8.608898953 8.415236769 8.401440813 8.715385697 8.759629945 8.604754552 194459560 amoA Nitrogen Nitrification superkingdom:Archaea; 8.379520878 8.189763327 7.826777983 8.119543473 8.138785051 8.433493148 7.377141461 8.47736051 7.913650695 7.680685804 7.972923443 119537865 sigma_70 Stress Sigma factors Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 9.603575045 9.477852701 9.434176685 9.061728106 9.027331471 9.203997177 9.343965773 9.160473968 9.315896296 9.402069199 9.358370305 9.392138641 160359868 atzA Organic Remediation Herbicides related compound Petrotoga mobilis SJ95 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Petrotoga;species:Petrotoga mobilis; 8.775065604 8.655469293 7.579451027 7.854444958 7.867134357 7.262249375 7.552293608 7.950124385 7.902411305 7.818659575 8.261503684 34497219 pcc Carbon cycling Carbon fixation Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 8.24546682 8.223080211 8.738218272 8.656961619 7.989471338 8.558608186 8.428387644 8.464660666 8.149402937 8.110210447 7.966581126 71740349 CopA Metal Resistance Copper Pelobacter propionicus DSM 2379 9.245342222 9.126504454 9.224439631 8.362525024 8.217058152 8.258564249 8.170730975 7.659590174 8.090561895 8.211220646 8.457023933 85089955 nagG Organic Remediation Aromatics Aromatic carboxylic acid Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 8.221306168 8.353506315 8.697906004 8.101489162 8.172859171 7.823474578 7.945065209 7.864895675 8.161451072 7.917959472 7.893444946 8.023460765 71741082 ArsC Metal Resistance Arsenic Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 8.152187705 8.466496209 7.222293707 7.548792599 8.13568759 8.110125468 7.745629492 8.352529095 7.900973709 7.771873577 7.795191928 118052718 nagI Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 9.139698437 9.087357457 9.15246741 9.725551415 9.708439421 9.427559901 8.986280694 9.784867452 8.999361796 9.429373637 9.133482412 9.609557159 167668964 ChrA Metal Resistance Chromium Anaerotruncus colihominis DSM 17241 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Anaerotruncus;species:Anaerotruncus colihominis; 8.429292434 8.768387723 8.421605603 8.026497381 7.742993304 8.121625522 8.245434447 7.72928683 8.274753071 7.749448908 7.820666671 7.868880014 209515919 fnr Stress Oxygen stress Burkholderia sp. H160 8.484410711 8.208862365 8.289030987 8.050862085 8.050294008 7.568846456 8.096595929 8.130322413 7.804399774 7.58239444 8.147796287 221736076 pstB Stress Phosphate limitation Agrobacterium vitis S4 8.10092941 8.111922706 7.965784357 7.681506498 7.660495149 7.814552592 7.419782695 7.360651642 157369466 endochitinase Carbon cycling Carbon degradation Chitin Serratia proteamaculans 568 8.428395471 8.330360524 8.483138448 7.914290587 7.598678106 7.732540279 7.560108272 7.424683873 8.08557213 7.661686123 7.564566217 7.79312495 119535751 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.411496553 8.625025348 8.110510881 8.447828953 8.355849085 8.592301609 8.409968908 8.721428834 8.301515298 8.504186857 8.521006444 39996164 cytochrome Energy process Energy process Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 8.848540935 9.036500714 8.741907055 8.05821836 9.292536348 9.244821797 8.774785926 9.377988199 8.693577185 8.971280117 9.360423928 213924539 oxyR Stress Oxygen stress Pseudomonas syringae pv. tomato T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 8.11810662 8.160610771 8.353500178 8.239891049 8.125525307 7.891432219 8.479301457 8.076657257 8.101064634 8.176145609 7.579144095 117989599 dehH109 Organic Remediation Chlorinated solvents Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8.682932161 8.80058118 8.474256668 8.288191177 8.558647367 8.339798495 8.488004017 8.229832424 8.710795698 8.436327513 8.286652842 8.581538412 89332504 dsrB Sulphur sulfite reductase Desulfitobacterium hafniense Y51 8.206464201 7.969747221 8.156558012 7.328628766 7.243307825 7.316052327 6.949951362 6.904856426 7.275379247 7.019072727 7.338909757 256036614 fnr Stress Oxygen stress Chitinophaga pinensis DSM 2588 8.058651743 7.971521175 8.107416504 7.315200989 7.106612647 7.007766322 6.899979576 7.192939171 254398047 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 8.214607542 8.147329479 8.274678523 8.350062349 8.286790746 8.023077953 8.207374025 8.378751936 8.352285985 8.25400282 8.331471529 8.191291133 95113354 pstA Stress Phosphate limitation Pseudomonas entomophila L48 9.977517959 9.849970406 10.11082772 8.939037274 9.081513611 9.12177032 9.320215652 9.0176172 9.447855076 8.999927419 9.195532393 9.371129127 261746512 perR Stress Oxygen stress Leptotrichia goodfellowii F0264 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteria;order:Fusobacteriales;family:Fusobacteriaceae;genus:Leptotrichia;species:Leptotrichia goodfellowii; 7.856731316 7.728550041 7.478932288 7.052526553 7.354323926 7.446316939 7.179851798 7.582975752 118029817 ALN Organic Remediation Others Burkholderia phymatum STM815 9.329581199 9.313312228 8.947737812 9.352557769 9.619186249 9.107825409 9.457390393 9.867778918 9.095760191 9.66506564 9.507130249 9.407738986 218517340 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Acidithiobacillus ferrooxidans ATCC 23270 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 8.966655626 8.975417641 8.812992974 8.152167975 8.124863313 8.094541834 8.072477791 8.001250833 8.379993121 8.094733344 7.970225772 8.388792261 54027279 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 9.373405498 8.902948987 8.620467964 9.431675603 9.246966193 8.764489154 9.423007228 9.235017569 9.06352878 8.956447965 8.931333634 152027013 silC Metal Resistance Silver Anaeromyxobacter sp. Fw109-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 7.837037324 7.83279655 7.647053882 7.283729138 8.402079666 7.636279739 7.678263516 7.770322373 198266771 pstB Stress Phosphate limitation Octadecabacter antarcticus 238 8.885740831 8.675185322 8.534874069 8.273784513 8.39758421 8.183171815 8.415438752 8.234144061 8.303207742 8.533029515 8.453338521 8.026246237 256357131 sigma_24 Stress Sigma factors Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 8.983339638 8.99638571 9.076222791 8.351985553 8.394250487 8.367826243 8.415864581 8.191332731 8.258893731 8.372197447 8.24827726 8.539221426 148260891 ABC_transporter_III Bioleaching other category Acidiphilium cryptum JF-5 8.380716221 8.540960218 8.347334398 7.695440626 7.947323882 8.553160617 8.708794689 8.12201074 8.701890899 7.999580549 7.928699495 8.109591605 146402261 narH Stress Oxygen limitation Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 8.967098801 9.413415115 8.781504236 8.892035675 8.978083266 9.556827453 9.712406632 9.360031245 9.415616619 9.183306189 9.34436587 9.461903362 219965694 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.576653519 8.643684968 8.458267455 7.899808958 7.844850213 8.420666549 8.543661953 8.156736775 8.482526557 8.096807104 8.332404883 8.652489835 177842236 ara Carbon cycling Carbon degradation Hemicellulose Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 8.688136493 8.276638277 8.613097615 8.701452884 8.531764929 8.517923732 8.562863699 8.567332547 8.399642507 8.57175077 8.088064952 6759560 sigma_38 Stress Sigma factors Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.33689049 8.596931186 8.55799524 8.829600971 9.102821623 8.638148062 8.650666668 9.206321439 8.77195784 9.035084309 8.68782043 8.741714786 260456454 proV Stress Osmotic stress Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 9.400117138 9.558442243 9.546431729 9.633726945 9.480668907 9.134303292 9.562737455 9.690904321 9.563383678 9.668447307 9.550630496 9.515796952 196194009 pstA Stress Phosphate limitation Alcanivorax sp. DG881 8.538157854 8.546893932 8.343847842 8.08979787 7.881813317 8.116062164 8.578494808 8.565285463 8.493791941 8.424178059 34483022 nosZ Nitrogen Denitrification Wolinella succinogenes superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Wolinella; 8.342745189 8.185526646 8.467993882 7.833066759 7.80197677 7.639882186 7.193155043 7.291152422 7.833883898 7.418289261 7.419456927 7.642441124 4406087 tfdB Organic Remediation Aromatics Chlorinated aromatics Alcaligenes sp. JD17 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes; 8.569043525 8.628960492 8.858151249 8.281423951 8.275617739 8.077470991 7.888022525 8.23197232 8.093212591 8.04550041 7.856035921 8.170571926 262163971 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Vibrio mimicus VM223 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 8.725354824 8.606950232 8.504243553 8.95416923 8.545270636 8.075114848 8.662864302 8.536865001 8.878905366 8.51132791 8.392537001 8.228029431 94471307 narG Nitrogen Denitrification uncultured bacterium 8.902519424 8.913355371 8.805489996 8.096211998 8.24853491 8.171029733 8.266505472 8.461283892 8.185119243 8.449155017 8.431556678 8.485362353 32364176 gyrB other category gyrB Bisgaard Taxon 14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae; 8.488749869 8.847534688 8.646979139 8.352016048 8.79453976 8.736643179 9.02807487 8.79562467 8.567946334 8.858575213 9.088807678 8.996651465 167561665 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Burkholderia oklahomensis EO147 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia oklahomensis; 11.14239175 10.96882555 11.2021825 10.20104217 10.01839458 10.27588538 10.65715098 10.32283469 10.74624819 10.44772223 10.46119296 10.59254673 114564488 gyrB other category gyrB Shewanella frigidimarina NCIMB 400 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella frigidimarina; 8.360291149 8.338585218 8.509045582 7.85849565 7.880392544 7.847568545 7.557277529 7.323543086 7.534560061 7.341447005 7.795879237 10580386 endochitinase Carbon cycling Carbon degradation Chitin Halobacterium sp. NRC-1 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halobacterium;species:Halobacterium salinarum; 8.90277184 8.900055126 8.66518647 8.197150604 8.693058685 8.822092423 8.098584382 8.598325978 8.471414901 8.555399115 192285577 ppx Phosphorus Phosphorus utilization Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.542216497 8.818331846 8.733570048 8.449577035 8.506630249 8.436199192 8.180369094 8.599889613 8.564608887 8.623328923 8.009108036 225019681 ppk Phosphorus Phosphorus utilization Clostridium methylpentosum DSM 5476 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium methylpentosum; 8.412873379 8.278192627 8.423899407 7.778532331 8.008114924 7.205977924 8.120451326 7.795726391 8.854285901 7.896790392 7.771850132 7.782624398 217501955 sigma_24 Stress Sigma factors Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 8.589846023 8.643530147 8.296218216 7.760740204 7.807871018 7.934275068 7.822432296 7.802261855 8.28305335 8.002929672 8.048462541 7.883612538 146401621 NADH_quinone_oxidoreductase Bioleaching Electron transport Acidiphilium cryptum JF-5 8.433696666 8.325011505 8.256279986 8.073082122 8.306898633 8.478807086 8.116182738 8.148266854 8.398598417 8.222100435 8.419804147 8.159176371 124265860 ureC Nitrogen Ammonification Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 8.629038976 8.393264657 8.50289717 8.364449999 8.196854276 8.114584009 8.840022317 8.36074531 8.706053686 8.502052465 219872054 pilin virulence pilin Haemophilus parasuis SH0165 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus parasuis; 9.063312869 9.101386485 9.285015387 8.54696869 8.544031921 8.363893791 8.234795338 8.152382972 8.47104763 8.290891235 8.177210706 8.674344047 1408294 BADH Organic Remediation Aromatics Other aromatics Acinetobacter calcoaceticus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 8.475642628 8.420272842 8.578369287 7.677889082 7.640500341 7.672851306 7.051486809 7.27384748 8.016259443 7.654992739 7.500793877 7.88247762 121535620 glnA Stress Nitrogen limitation Thermosinus carboxydivorans Nor1 6.783133581 7.006827686 71907973 pimF Organic Remediation Aromatics Aromatic carboxylic acid Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 10.4519744 9.848877432 9.795047178 10.35355708 10.08315099 9.680996634 10.36336064 10.20447445 10.24100433 9.935388949 9.726306497 9.888360575 90903283 aoxB Metal Resistance Arsenic uncultured bacterium superkingdom:Bacteria; 8.368872212 7.967174078 8.027491089 8.17820265 8.000664528 7.714154781 7.866001053 8.20540233 8.18498028 8.185132615 8.019554892 8.088647786 151281305 atzB Organic Remediation Herbicides related compound Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 8.914159684 8.709922743 8.652268674 8.834269223 8.878826946 8.745937629 8.942512202 9.088576266 8.950693758 9.311949196 9.295266113 9.048011733 94313800 catB Organic Remediation Aromatics BTEX and related aromatics Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 9.62506394 9.719999147 10.02211759 9.390454813 9.101209744 8.955437835 9.07594669 9.004910966 8.842787634 9.050289115 8.937311848 9.421455707 86554549 fnr Stress Oxygen stress Synechococcus sp. JA-3-3Ab 9.26199079 9.357317527 9.486946933 8.53386968 8.605732382 8.928227748 8.923587941 8.9285369 8.877191869 8.816691679 8.707671475 9.086624556 126174930 fnr Stress Oxygen stress Shewanella baltica OS155 8.57698078 8.379243519 8.675872212 8.000092479 7.880026186 7.960721561 7.60335242 7.525503223 8.122990805 7.4087261 7.29570717 7.923502536 89053167 pimF Organic Remediation Aromatics Aromatic carboxylic acid Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 8.816995806 8.765503422 8.661672823 8.457043559 8.066376157 8.086322519 8.144463458 8.150020174 8.03525505 7.769220798 8.070925206 151302183 AprA Sulphur adenylylsulfate reductase Desulfomicrobium baculatum DSM 4028 8.103132154 8.205619844 8.003223875 7.567572575 7.535472336 7.693884936 6.879797186 7.860352991 7.103895852 7.395759804 218781629 pcc Carbon cycling Carbon fixation Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 8.843454572 8.676931845 9.171506278 8.697715617 8.902734672 8.406237287 8.837746016 9.435883178 8.646285322 9.254393978 9.070560884 9.377779482 225569383 phoB Stress Phosphate limitation Clostridium hylemonae DSM 15053 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 9.420153802 8.895099148 9.946748118 8.554245353 8.596588846 8.722903043 134034468 mer Metal Resistance Mercury Bradyrhizobium sp. Is-D302 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 9.307269387 9.128214962 8.665093246 8.491349578 9.156189729 8.934049447 9.52087083 9.26214273 9.617605988 9.091345294 115371545 phenol_oxidase Carbon cycling Carbon degradation Lignin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 8.3181838 8.142613954 8.101745957 8.906293286 8.738416618 8.441831608 8.434851187 8.48874253 8.462694086 8.297634824 8.137504709 8.096579159 91775712 silC Metal Resistance Silver Methylobacillus flagellatus KT superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 9.016350543 8.910113009 8.639714746 8.087121206 8.686093872 9.162738993 8.703825376 8.879381179 9.048713458 9.253572556 9.230545375 194346779 pcc Carbon cycling Carbon fixation Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 8.480585151 8.125387655 7.944852827 7.450759219 7.622667789 8.086211088 7.788964423 7.585902909 8.214187299 7.728454337 7.670193302 7.737238222 187928870 mer Metal Resistance Mercury Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 9.305759769 9.113823441 9.366611833 8.646467199 8.557160671 8.487033605 8.799427296 8.557113085 8.781590841 8.655200107 8.682245652 8.660857524 119714930 bphA Organic Remediation Aromatics Polycyclic aromatics Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.982502098 8.961329308 9.073275213 8.663387977 8.438144802 8.860558074 9.223500835 8.772152152 9.19197985 8.970919081 8.877972997 8.95920854 84690480 fnr Stress Oxygen stress Parvularcula bermudensis HTCC2503 9.197863909 9.147106226 9.464721466 8.571063512 8.426760989 8.459613511 8.998223534 8.533822029 9.078388135 8.876245917 8.740993049 7321235 narH Stress Oxygen limitation Paenibacillus sp. A-234 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 8.742757889 8.29547848 8.290843023 8.104437925 7.949135139 7.888119134 7.812578801 7.616482962 8.167128694 7.909327618 7.578567452 7.907239418 145577440 CadA Metal Resistance Cadmium Pseudomonas mendocina ymp 8.729520181 8.821840504 8.869873064 8.300082992 8.172575763 8.338843241 8.428609979 8.153567512 8.507019372 8.229867899 8.087716574 8.481115473 84666749 bclA Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.476646259 8.472265463 8.72477424 8.090800718 8.118703125 8.124687408 8.009832387 8.28600995 8.275807456 8.332948633 8.262238028 8.191518772 84663553 dsrB Sulphur sulfite reductase sulfate-reducing bacterium AR1103 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 8.043006335 8.094730225 7.603154691 8.332801115 8.461272098 8.390587387 8.08772259 8.475266203 8.382130958 8.044136274 8.101210197 159889604 katE Stress Oxygen stress Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 9.112809791 8.928390755 8.93597131 8.775742158 8.955475545 8.818911171 8.674532287 8.662071796 8.901682007 8.956057782 9.125076064 8.96936073 120556132 carA Organic Remediation Aromatics Heterocyclic aromatics Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 8.281527197 8.855827976 8.857270958 7.811601405 8.391737444 8.631658302 8.766402715 7.908493766 8.713577428 7.853512034 8.201647123 7.739387103 209401878 narG Nitrogen Denitrification uncultured bacterium 8.442974729 8.24018745 7.955643409 7.728017064 7.558177276 7.843930735 7.793682226 7.890097228 8.11534858 8.211490239 8.225469339 7.831516672 171994894 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Burkholderia ambifaria MC40-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 7.900497337 8.375225724 8.023904102 7.770290843 7.820128973 7.670161705 7.922983419 8.005199285 7.604855388 7.56370625 7.769791572 192810708 atzC Organic Remediation Herbicides related compound Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.321137079 8.320966534 8.443191715 8.888821911 8.842936605 8.348490323 8.413823765 9.013714028 8.553424518 8.687506174 8.208239701 116608683 gyrB other category gyrB Arthrobacter sp. FB24 9.419097041 8.893665047 8.742891643 8.439366423 8.403607237 8.299271445 8.62118906 9.101276912 66474889 cmuA Organic Remediation Chlorinated solvents uncultured bacterium superkingdom:Bacteria; 8.40018227 7.935405952 8.567570658 8.400279169 8.372818116 7.612325181 8.297362265 7.973272782 8.15461453 8.371550033 7.900682432 149279256 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Pedobacter sp. BAL39 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter; 8.310796124 8.199808629 8.366046785 7.628528505 7.512029064 8.052644562 8.072272064 7.66074977 8.302063115 7.831485509 7.797445626 7.896454743 269306246 ara Carbon cycling Carbon degradation Hemicellulose Xylanimonas cellulosilytica DSM 15894 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Xylanimonas;species:Xylanimonas cellulosilytica; 8.912741269 8.783519706 8.607302208 8.492663336 8.44418978 8.858013984 8.510113185 8.467851218 8.507011364 8.582089577 8.312985202 17428649 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 8.69737506 8.795862466 7.754686173 7.986120309 8.138852207 8.724319392 7.60252083 8.312895257 7.71613978 8.119934656 8.184868704 126665913 proV Stress Osmotic stress Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 8.612796778 8.612671901 8.73545524 8.883100609 8.805657795 8.528136128 8.449841157 9.185465196 8.806476524 9.052802794 8.843901259 8.870867386 258508159 ABC_antibiotic_transporter Antibiotic resistance transporter Lactobacillus rhamnosus GG superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 8.396964121 8.205536785 8.507639054 7.981275263 8.015105599 7.908917072 7.677353036 7.412913533 8.123009666 7.45770362 7.542617934 7.941336262 88804719 nbaC Organic Remediation Aromatics Nitoaromatics Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 8.596403118 8.515094577 8.836129872 8.374962905 8.241619875 8.502288578 8.662327061 8.334394251 8.19392968 8.363654801 8.082385642 241368104 fnr Stress Oxygen stress Acidovorax delafieldii 2AN 9.018457213 9.029910795 9.244343187 8.712171358 8.619895802 8.637743924 8.663352867 8.872329579 8.310868484 8.764202067 8.866373406 8.94387565 114765511 oxyR Stress Oxygen stress Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 9.420477009 9.156205754 8.868886965 9.343430411 9.159734843 8.98232576 8.945330626 9.250000571 9.066385644 9.175805053 9.297813922 9.229496173 145218860 dsrA Sulphur sulfite reductase Prosthecochloris vibrioformis DSM 265 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeovibrioides; 8.253680147 8.350214141 8.695858919 7.979801457 7.6654901 7.636486419 7.393163241 7.532971017 7.729093409 223894228 sigma_24 Stress Sigma factors bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 8.05395743 8.01156646 8.189378634 7.571761205 7.454186451 7.548283716 7.619584139 7.246079354 7.592496571 7.243862618 7.745994233 166860183 proV Stress Osmotic stress Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 9.899653162 9.681922954 10.12577244 10.20288763 9.859126535 9.624602524 9.910538161 10.13875668 9.84423573 10.01879475 9.963478562 10.12193646 213522519 amyA Carbon cycling Carbon degradation Starch Bifidobacterium longum subsp. infantis ATCC 15697 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 8.75427909 8.560275976 8.804227826 8.583291447 8.55185832 8.483166903 8.583878907 8.737752018 8.740519029 8.82735002 8.743540736 8.775878176 150401856 nifH Nitrogen Nitrogen fixation Methanococcus aeolicus Nankai-3 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanococcaceae;genus:Methanococcus;species:Methanococcus aeolicus; 8.311484964 8.410176314 7.411909652 7.620402234 7.583156275 7.096616539 7.081445045 7.255062558 7.157186457 7.608909916 262038558 pstB Stress Phosphate limitation Leptotrichia goodfellowii F0264 8.277270788 7.778373131 8.105637792 7.42498381 7.291559108 7.317895229 6.61426228 7.441790562 7.051168719 6.837044533 7.264869701 113473698 cbdA Organic Remediation Aromatics Chlorinated aromatics Sphingomonas sp. KA1 8.74330594 8.656598403 8.657688123 7.881669385 7.726919063 7.821561491 7.584510187 7.556855534 8.132326093 8.024632031 8.087795209 8.266805855 115520069 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.61173423 8.364428857 8.129697628 7.866242314 7.757652621 7.953129727 8.201916698 7.50589175 8.260682593 7.798821598 7.67787726 7.881541229 222453397 CopA Metal Resistance Copper Halorubrum lacusprofundi ATCC 49239 10.44357899 10.25032496 10.44331653 9.880078104 9.695400423 9.53809285 10.00137491 9.658181971 10.03052823 9.835320062 9.949052282 9.814115267 220709894 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 9.084748491 9.068101731 9.0848407 8.283494367 8.317645381 8.440131409 8.265754428 8.21560525 8.635513753 8.219082883 8.249511146 8.613126697 88941397 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 8.318029627 8.425337005 8.477163068 7.981315 8.175990643 8.264436848 8.439363429 8.064710404 8.510537409 8.138006647 8.184445475 8.332071927 77381500 pcaG Organic Remediation Aromatics Other aromatics Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.077236296 8.120225681 7.4353581 8.174379565 8.434745278 7.371763484 7.627147196 7.665802627 7.812296171 114567595 ZntA Metal Resistance Zinc Syntrophomonas wolfei subsp. wolfei str. Goettingen 8.544677571 8.283421762 8.686173287 8.130863988 7.823496759 7.856290087 7.675028753 7.874736085 8.231329134 7.733037417 7.656668415 8.008245919 68197571 tfdA Organic Remediation Aromatics Chlorinated aromatics Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.367708464 8.417380312 8.36961193 8.13374616 7.957556121 8.593199245 8.452385636 8.265885336 8.434429362 8.429616598 8.279527636 84787662 tfdA Organic Remediation Aromatics Chlorinated aromatics Erythrobacter litoralis HTCC2594 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 8.435720222 8.710663566 8.298294534 8.859074765 8.887171436 8.658305302 9.035640216 8.924639768 8.766680073 8.830250053 8.901420409 8.586303023 158425658 pstB Stress Phosphate limitation Azorhizobium caulinodans ORS 571 9.160395257 8.717361786 8.661165772 9.207290479 8.970055728 8.6540563 9.213114657 9.007433337 9.138223041 8.840782852 8.794300826 8.556158622 73762900 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.24186517 8.269315155 8.414573596 7.637735848 7.750456477 8.231219948 8.44184371 8.313969793 8.514988069 7.897078385 7.655014938 8.117978965 157804744 APS_AprB Sulphur adenylylsulfate reductase Thiocystis violacea superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocystis; 8.279516444 8.592491801 8.254060828 7.835489147 7.97453729 7.882841829 7.67847345 8.013627376 7.874877308 7.969544937 8.298990499 8.098661194 145237182 tfdA Organic Remediation Aromatics Chlorinated aromatics Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8.211428943 7.865668989 8.571907753 7.849798653 8.031448653 8.014906196 7.794688957 7.865999517 8.090385792 7.882796092 8.043907681 7.836595969 84362693 ChrA Metal Resistance Chromium Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 9.027062649 8.984439685 9.031450077 8.994220928 8.987136729 8.862249795 8.885714992 9.181659792 8.770525082 9.007868647 8.985069516 9.038209622 171994939 CopA Metal Resistance Copper Burkholderia ambifaria MC40-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 8.094951903 7.963395963 7.995817601 7.589640231 7.842367509 8.102797759 8.117740497 8.287748942 8.084371502 8.065348348 8.079492471 7.856402088 56695591 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 8.22027612 8.547680675 8.606480172 8.439356457 8.584714634 8.401632099 8.495699272 8.96271672 8.474941399 8.974512287 8.478793371 8.459116523 148270571 vanA Carbon cycling Carbon degradation Others Thermotoga petrophila RKU-1 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga;species:Thermotoga petrophila; 8.647582126 8.299400905 7.65908181 7.701414214 7.742405529 7.740005653 7.469884246 8.038148508 7.746361804 8.113942721 254398648 fnr Stress Oxygen stress Streptomyces pristinaespiralis ATCC 25486 8.489805342 8.661891688 9.178050127 9.287737562 9.235686108 8.782150307 9.488936763 8.565616255 9.116688633 9.037066191 9.265154435 260888199 nrfA Nitrogen Dissimilatory N reduction Selenomonas sputigena ATCC 35185 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sputigena; 8.106756959 8.044567817 7.887671994 7.796111344 7.666152704 7.304415131 7.857688467 7.994056711 7.89545568 7.756831357 7.638323165 33567315 HcaACD Organic Remediation Aromatics Aromatic carboxylic acid Bordetella bronchiseptica RB50 8.271392277 8.454360611 8.560273478 8.4089809 8.172814015 8.050299253 77378765 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.750128226 8.573992097 8.790212557 8.053989005 8.100088219 8.055032583 7.921387907 7.726166846 8.143924814 7.842339503 7.895017394 8.081556858 195541931 fnr Stress Oxygen stress uncultured bacterium 1062 8.118953552 8.224068012 7.347143091 7.399006257 7.664251175 8.122718153 7.83970361 8.337946903 7.476600299 7.515746594 7.313609166 13815558 peroxiredoxin Bioleaching Metal Resistance Sulfolobus solfataricus P2 8.778415444 8.624066488 8.592798902 8.056926294 7.860035835 7.84261487 7.457838704 6.961011005 7.652200971 7.602796399 7.979923383 69938613 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.469715601 8.626516469 8.633514039 8.008848267 8.216194639 8.318204495 8.163111574 8.513782378 8.079096787 8.450712249 8.297464214 8.604126674 218521417 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 9.473456909 9.37117095 8.946310118 8.860742413 8.52759724 9.123466037 9.599811366 8.948999425 9.276832932 8.68916885 8.980240057 8.608633487 121306593 hrcA Stress Heat shock Thermosinus carboxydivorans Nor1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Thermosinus;species:Thermosinus carboxydivorans; 8.537840782 8.671219797 8.784905766 8.651348927 8.63869513 8.58674998 8.356301559 8.490886842 8.690032516 8.906436152 9.103222623 8.815744195 126649885 katE Stress Oxygen stress Bacillus sp. B14905 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 8.668601126 8.555783247 8.08895586 7.945466865 8.016250495 7.378974774 7.55951772 7.924998403 7.798819147 7.781481839 7.992195243 47574840 ChrA Metal Resistance Chromium Rubrivivax gelatinosus PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 8.650329702 8.653855757 8.541280637 8.410378724 8.292461875 8.337473544 8.439193565 8.287631217 8.45018166 8.234062588 8.237026672 8.044029246 257388962 endochitinase Carbon cycling Carbon degradation Chitin Halomicrobium mukohataei DSM 12286 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halomicrobium;species:Halomicrobium mukohataei; 9.01782567 8.657285809 8.85067937 8.337633039 8.12391978 8.150809127 7.861976613 7.983835003 8.367076479 8.154590575 8.448726163 8.497923595 219949992 ppx Phosphorus Phosphorus utilization Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 8.994193685 8.795888046 8.926006919 8.62185795 8.574009899 8.589393026 8.561528998 8.581645873 8.625206821 8.400553338 8.626387105 8.512243676 33564820 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Bordetella parapertussis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 8.706239317 8.677352185 9.04659651 8.465578742 8.277982043 7.977839839 8.604699871 8.966057613 8.604974102 8.871142926 8.835531066 9.043089616 83749597 benAB Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia solanacearum UW551 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 8.22095585 8.324159548 8.368806452 8.507122828 8.174340666 7.786574266 8.231892588 8.295474774 8.101976495 8.029512759 8.06226001 8.045186436 118435759 pstB Stress Phosphate limitation Stappia aggregata IAM 12614 8.378396708 8.212167724 8.25036203 7.942453617 7.91562999 7.784521358 7.901791021 7.810282435 8.347016332 7.59036465 7.903081309 7.993406265 146337729 exaA Organic Remediation Chlorinated solvents Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.177922155 8.405302619 8.669800304 8.033497979 8.418111912 8.4424239 8.396734966 8.420673395 8.544094853 8.674538976 8.596018146 239623567 clpC Stress Protein stress Clostridiales bacterium 1_7_47_FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales; 8.409212252 8.243497666 8.262546313 7.735226811 8.322595744 8.109783203 8.353969535 7.943457145 8.261225184 8.229800468 8.451538016 147735311 ara Carbon cycling Carbon degradation Hemicellulose Thermotoga petrophila RKU-1 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga;species:Thermotoga petrophila; 8.478996404 8.204761284 7.852437543 8.270892454 8.193674733 8.13051103 8.21248933 8.255868825 8.083952943 39648700 PobA Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris CGA009 8.668241394 8.654539169 8.61152995 8.413809592 8.315153083 8.049592141 8.125284608 8.559166124 8.56994952 8.504301944 8.471136642 8.394251953 258519823 pilin virulence pilin Cardiobacterium hominis ATCC 15826 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Cardiobacteriales;family:Cardiobacteriaceae;genus:Cardiobacterium;species:Cardiobacterium hominis; 8.691650742 8.566527475 8.944762061 8.039547051 7.894789974 7.778084626 7.765625708 7.802528875 7.782152975 85097536 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 9.227911498 9.234399002 9.088052784 9.63315842 9.704794186 9.314692978 9.329957385 10.02401443 9.351038723 9.791558133 9.646751438 9.807597677 154496065 cda Carbon cycling Carbon degradation Starch Bacteroides capillosus ATCC 29799 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides capillosus; 8.455061824 8.522272891 8.291080941 7.560763377 7.546045552 7.733602526 8.119532402 7.617110268 7.714056576 7.513496641 7.632102716 209532152 mauAB Organic Remediation Herbicides related compound Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 8.495170985 8.388799713 8.578927825 8.806278567 8.735111372 8.665519663 8.417083071 9.06281436 8.446600344 9.006913985 8.499885854 15899356 sulfide_quinone_reductase Bioleaching Sulphur Sulfolobus solfataricus P2 8.540235519 8.662393657 7.688941496 7.682544955 7.725416246 7.974057069 7.686444714 8.02706889 7.812559981 7.830957157 192764372 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.052475747 7.958304687 7.831398143 7.411604146 7.377811553 7.737353995 7.558916283 110822331 pnbA Organic Remediation Aromatics Nitoaromatics Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.667474005 8.698642468 8.865567712 8.842938413 8.768084932 8.619877504 8.829363787 9.353635418 8.421227604 8.866085698 8.856405103 9.012736428 256393617 narH Stress Oxygen limitation Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 8.445768544 8.780439905 8.448498542 8.091366142 8.326459043 8.18127884 8.357700721 7.772511632 8.600013885 8.111540393 8.084992999 8.109602293 13423947 pcaG Organic Remediation Aromatics Other aromatics Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 8.936029152 9.143150491 8.862056271 8.58794524 8.590382757 8.465259338 8.599407043 8.854079569 8.648485356 8.934831426 8.874582256 9.071678727 189426528 ChrA Metal Resistance Chromium Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 8.942830576 9.013946787 8.69985274 8.354789699 8.402311369 8.183060612 8.030503554 8.007639578 8.476669684 8.002648681 7.927464153 8.336619819 84310484 gyrB other category gyrB Bacillus vallismortis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.061253343 7.203320808 7.025297857 6.916289696 7.256168251 13474034 MFS_antibiotic Antibiotic resistance transporter Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 9.381363747 9.405866731 9.208945794 222437536 sigma_32 Stress Sigma factors Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 7.839394821 7.834138009 7.666448577 7.595075374 7.711492347 7.77455527 7.739120884 7.630354457 7.22097687 4586274 cumA Organic Remediation Aromatics Other aromatics Alcaligenes faecalis 8.867430683 8.83125234 8.426690818 7.884344081 7.692809523 7.838450475 7.815746355 7.954682808 7.80811343 8.149315447 238028638 MFS_antibiotic Antibiotic resistance transporter Burkholderia glumae BGR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia glumae; 8.804385263 8.103464636 8.368739466 8.490057856 8.089920024 8.381659281 8.541319787 7.998855682 8.176593472 8.07617336 8.440984902 8.416813846 219537038 rd Organic Remediation Chlorinated solvents Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 8.879297231 9.022527412 9.112065851 8.432302533 8.287173267 8.62125011 8.707384505 8.336008617 8.539800712 8.399100986 8.104020114 8.524284062 166712801 sigma_24 Stress Sigma factors Xanthomonas oryzae pv. oryzicola BLS256 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 11.02002563 10.74201832 10.60832882 10.34440209 10.41381322 10.29775984 10.4189694 10.32336394 10.6337231 10.15475736 10.30813792 10.4908389 119955806 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.817633274 8.725772038 8.767883851 8.726894028 8.919068289 8.814612664 8.641767099 9.346676914 8.779611612 9.036284618 8.916046927 8.686514689 183580086 pimF Organic Remediation Aromatics Aromatic carboxylic acid Kocuria rhizophila DC2201 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 8.538683477 8.66591756 8.559332772 8.203895555 8.142635859 8.047522483 8.272558535 7.999236834 8.351209139 261213082 pstC Stress Phosphate limitation Vibrio sp. RC341 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.764424258 8.960683379 8.761875774 8.33675627 8.253101547 8.497924609 8.409035572 8.21617667 8.514522026 8.281182473 8.457190385 8.535215019 220720612 bphA Organic Remediation Aromatics Polycyclic aromatics Variovorax paradoxus S110 9.013153364 8.943554189 8.568676942 8.217504191 8.410686145 8.867267701 9.189394636 8.784707738 9.123682835 8.577283942 8.660824554 83724055 nahA Organic Remediation Aromatics Polycyclic aromatics Ralstonia solanacearum UW551 8.77264675 8.699160816 8.481797501 7.978683313 8.547983567 8.589684149 8.899074005 7.425559128 8.823428562 8.093871346 7.834172995 8.189772708 159186540 proV Stress Osmotic stress Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.221932218 8.448805208 8.1683098 8.242674663 7.917314601 7.90986789 8.224376046 8.077046017 7.891075354 7.93183713 8.07387952 152023095 CadA Metal Resistance Cadmium Bacillus cereus subsp. cytotoxis NVH 391-98 9.289206216 9.28227259 9.368043163 8.672285361 8.302884613 8.474261941 8.589195529 8.890657989 8.631175065 8.896752057 8.725339625 8.991599022 126466281 cellobiase Carbon cycling Carbon degradation Cellulose Staphylothermus marinus F1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Staphylothermus;species:Staphylothermus marinus; 8.203281208 8.41216304 8.228273756 7.62150469 7.984875115 7.57406555 7.085020729 7.291685669 7.778860098 7.193411879 7.254522732 7.602196084 115379584 fnr Stress Oxygen stress Stigmatella aurantiaca DW4/3-1 8.560861388 8.185630182 8.218613057 8.367300648 8.494625927 8.278736263 8.297339904 8.167292414 8.212629873 8.327536427 8.074872773 7.922205755 171060030 catechol_B Organic Remediation Aromatics Other aromatics Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 8.764757178 8.818546819 8.61048596 7.89365656 7.745798467 8.14697379 8.551467594 7.776584223 7.75372733 7.883026962 8.117641153 89512796 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.234364345 7.892753119 8.142240293 7.57648616 7.592252003 7.712631247 7.621288423 7.633179088 7.914299232 7.791114877 7.749690112 7.671874731 171060255 fnr Stress Oxygen stress Leptothrix cholodnii SP-6 9.038781935 9.086294819 9.111118865 8.666121884 8.619504686 8.490628849 8.989711874 8.671417373 8.894059129 8.608654688 8.659454828 8.544106946 87080641 amyA Carbon cycling Carbon degradation Starch Arthrobacter globiformis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.968633262 7.89757339 7.851744564 7.850887143 7.726402903 7.771441125 7.866496079 7.881617803 7.894456773 7.931865101 7.713862059 9957143 phenol_oxidase Carbon cycling Carbon degradation Lignin Polyporus ciliatus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Polyporus; 8.179506053 8.350565256 8.273638561 8.177939694 8.222306157 8.055017317 8.333050832 8.212570128 8.024094256 7.706271499 88766403 katE Stress Oxygen stress Metarhizium anisopliae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Clavicipitaceae;genus:Metarhizium; 8.767010673 8.670982296 8.672162832 8.726614537 8.771399886 9.087831345 9.035323672 225575103 ahpF Stress Oxygen stress Blautia hydrogenotrophica DSM 10507 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Blautia;species:Blautia hydrogenotrophica; 9.386827342 9.108930013 7.929522221 8.039439157 8.243850006 8.507659408 8.827216101 94498543 sigma_70 Stress Sigma factors Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 7.295779853 7.340381638 7.556880674 7.769825486 6.92175755 8.059563836 7.534407271 7.269187209 7.646271723 119957507 CadA Metal Resistance Cadmium Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.688049986 8.617744036 8.594892445 8.319530018 8.309527301 8.057659982 7.846638843 8.385535704 8.511603393 8.349066654 8.378551713 8.497111506 182678200 gyrB other category gyrB Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 9.201821411 8.859150133 8.772137805 7.98164374 8.58779997 8.886064104 8.554538793 111225511 carA Organic Remediation Aromatics Heterocyclic aromatics Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 9.044080141 9.024368202 8.958876976 9.016217603 9.176846268 8.981274654 8.706311722 8.917850418 8.991175285 8.844421175 9.036192379 123228438 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 8.814359687 8.637515694 8.913136789 8.110896957 7.89383164 8.09858055 7.64926218 7.636033777 7.926032261 7.99577872 7.836887658 8.146883575 17743141 vdh Carbon cycling Carbon degradation Others Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.140138959 8.125577558 8.05023082 7.733781211 7.743761672 7.839294484 7.722122673 8.109599803 7.833456162 7.862497954 8.025353044 220718442 Arylest Organic Remediation Aromatics Other aromatics Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 9.108041501 8.936708782 9.184301034 8.587305913 8.449957661 8.626571976 9.067243323 8.498110102 8.976912934 8.479556159 8.313425662 8.361101861 114538697 atzB Organic Remediation Herbicides related compound Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 8.328686996 8.301593041 7.984467708 8.013999455 8.448374766 7.935228867 8.06918031 8.289721896 159184842 gyrB other category gyrB Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 9.014162592 9.257225803 9.145238852 9.700097435 9.52553234 9.484269786 9.46391228 9.923944277 9.268513828 9.643133185 9.717901443 9.152279108 13242044 proO Organic Remediation Aromatics Other aromatics Arthrobacter keyseri 8.265306372 8.001455555 8.350322683 8.270593606 8.000515187 8.525518217 8.531752581 8.260499575 8.37600544 8.556995685 7.96555846 221159793 pstB Stress Phosphate limitation Rhodobacter sphaeroides KD131 8.685611114 8.302922989 8.209208196 8.170390015 8.454093617 8.350742872 8.090535026 8.441371506 8.158101206 8.60106553 8.16764707 145304916 pulA Carbon cycling Carbon degradation Starch Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 8.513897596 8.556833574 8.623090836 8.130008631 8.49773328 8.699505471 8.372519116 8.477667761 8.533073677 8.231494291 8.622580187 7.936115078 255266351 hly virulence hemolysin Bryantella formatexigens DSM 14469 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;species:Bryantella formatexigens; 8.01216584 8.251646266 7.818456907 8.246578477 8.211982747 7.943742509 8.468336277 8.184782905 8.02643459 8.231590454 8.200301166 119954834 phtA Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii PYR-1 9.320821473 9.144064193 8.754556966 8.643505786 8.321877366 8.880774604 8.998005312 8.605233665 8.623150492 8.918215808 9.075117271 8.605533183 229818682 ara Carbon cycling Carbon degradation Hemicellulose Beutenbergia cavernae DSM 12333 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Beutenbergiaceae;genus:Beutenbergia;species:Beutenbergia cavernae; 9.816917876 9.738572765 9.778029396 9.602353085 9.383342731 9.203108107 9.358065035 9.477485045 9.301930628 9.541680092 9.616405768 9.493631213 167644743 ahpC Stress Oxygen stress Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 9.279236738 9.258919961 9.242092097 9.046711719 8.898839236 8.666927536 8.896912984 8.870981324 8.760764995 9.262887977 9.193024578 9.039993043 88711809 nbaC Organic Remediation Aromatics Nitoaromatics Flavobacteriales bacterium HTCC2170 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales; 6.938834092 7.609330434 238763591 ppk Phosphorus Phosphorus utilization Yersinia kristensenii ATCC 33638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia kristensenii; 8.683139497 8.922362257 8.981217844 8.255251599 7.900742412 8.389741025 8.094435338 7.873308569 8.175277933 7.999192612 8.137084983 8.391193793 177840590 sigma_24 Stress Sigma factors Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 8.660725374 8.675041093 8.725919797 8.264046387 7.858302446 7.805292709 8.387678427 7.720681511 8.421417317 7.60540707 7.703959213 7.889003381 196477140 obgE Stress Radiation stress Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 10.02189526 9.889212603 9.855100885 9.075053855 8.978819378 8.94028617 9.323235519 8.945598849 9.617246105 9.024147256 8.998379354 9.227258676 146192973 sox Sulphur Sulphur oxidation Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.761596192 8.647577115 8.984971224 8.93231203 8.93866625 8.682727981 8.487109129 8.958336452 8.666960012 8.823601719 8.808060416 8.594011776 110637772 TerC Metal Resistance Tellurium Cytophaga hutchinsonii ATCC 33406 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Cytophaga;species:Cytophaga hutchinsonii; 7.981774487 8.111670142 7.302089103 7.109958272 7.043526572 7.063313368 7.507117638 7.070821889 6.848345981 218244573 CopA Metal Resistance Copper Thermus aquaticus Y51MC23 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus aquaticus; 8.762418286 9.015507904 9.211348184 8.504363062 8.480629503 8.331885067 8.452781167 8.30573838 8.190827717 8.509353316 8.447199881 8.723926213 171697252 pstB Stress Phosphate limitation Cyanothece sp. ATCC 51142 8.596461495 8.362727092 8.544544849 8.203098988 7.860463092 7.917868111 7.532174109 7.523578662 8.079604126 7.660738276 7.541549983 7.801853638 212669323 catB Organic Remediation Aromatics BTEX and related aromatics Bacteroides finegoldii DSM 17565 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides finegoldii; 8.102343394 8.17150561 8.153405808 7.141814337 7.283524494 7.084611861 7.575679856 170077287 nitA Organic Remediation Aromatics Other aromatics Synechococcus sp. PCC 7002 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.549207075 8.467419808 8.08703784 7.951711436 7.828927977 7.454885577 7.668388294 7.801781489 7.933888873 8.131112791 254468051 phoB Stress Phosphate limitation beta proteobacterium KB13 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 7.286388567 7.269851467 170654467 exaA Organic Remediation Chlorinated solvents Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 8.799217594 8.923618562 9.101599396 8.385749425 8.285714886 8.420848113 8.285564997 8.35980708 8.446694504 8.212696157 8.234254675 8.665341643 26278744 narG Nitrogen Denitrification uncultured bacterium 8.888311779 9.188016954 9.174939378 8.365633394 8.390095497 8.328279651 8.645957404 8.487507145 8.669369891 8.645910508 8.511858491 8.52314008 88703386 pcc Carbon cycling Carbon fixation gamma proteobacterium KT 71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 8.947103052 8.586968305 8.644229387 8.297031661 8.221880411 8.028163179 8.209303674 8.299232147 8.076502767 8.278862595 8.448373417 8.515174827 220711562 cap virulence capsule Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.292539433 8.103290898 8.466380814 7.974691373 7.740029945 7.71231971 7.708511248 8.036347208 8.08925261 7.86004765 7.583606479 7.735891585 113882503 obgE Stress Radiation stress Synechococcus sp. CC9311 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.194139891 8.287221609 7.596192116 7.562447455 7.449073771 7.6507926 7.957692435 8.035627785 8.027156414 7.887942697 7.866226315 35210347 gyrB other category gyrB Bacillus tusciae superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae; 8.485250715 8.571415587 8.05145763 8.606253958 8.902035804 8.965329565 8.830165043 8.741233186 8.502719652 8.809526695 8.495225036 254386270 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.813992001 8.821870403 8.43623883 7.931449716 8.235576225 8.114262568 7.913988471 8.095402187 8.185904474 7.937775627 8.192279829 8.052213199 76577502 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.322586499 8.207113407 8.562712081 7.981625043 7.956030436 7.910329117 7.836226686 7.988522105 7.998723017 7.926668005 7.540179447 7.971415337 116804538 nasA Nitrogen Assimilatory N reduction uncultured prokaryote 8.757668129 8.816686763 8.266662804 8.338420059 8.374519738 7.674594579 8.981981053 7.915728402 8.077494488 8.196631515 221535983 pcc Carbon cycling Carbon fixation Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 9.307022118 9.134707272 9.235058806 8.689518543 8.60531043 8.523229549 8.193818596 8.236488434 8.545542339 8.25806833 8.502888329 154150648 rubisco Carbon cycling Carbon fixation Candidatus Methanoregula boonei 6A8 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;genus:Candidatus Methanoregula;species:Candidatus Methanoregula boonei; 8.869492266 9.056778305 8.621665092 8.80719432 8.697260492 8.571460235 9.02379733 9.02056046 8.799091097 8.903402632 8.843779265 8.575019102 270323032 Tet Antibiotic resistance other Micromonospora aurantiaca ATCC 27029 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora aurantiaca; 8.297154635 8.107910248 8.278759935 8.599801933 8.571668524 8.110581104 8.212836013 8.595942176 8.547774146 8.420935527 8.447044738 8.541334535 177841896 fnr Stress Oxygen stress Opitutus terrae PB90-1 8.15258572 8.396280867 7.317035379 7.327870837 7.672742112 7.944629838 7.228057169 7.62246494 7.476873263 7.405615224 183984829 pstA Stress Phosphate limitation Mycobacterium marinum M 8.061445375 8.184160686 8.06325746 7.491840295 7.344467333 7.897000653 7.665592601 7.578669591 8.119545724 7.613451891 8.103104748 7.607349903 219882844 clpC Stress Protein stress Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 9.839788065 10.11787988 9.608180349 9.275909038 10.09200633 10.0212657 9.634359172 10.12823688 10.03821842 9.863713431 10.17059481 146403690 CadA Metal Resistance Cadmium Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 8.92743822 8.964150786 9.069720932 8.400614551 8.413744533 8.424683992 8.534020479 8.529284575 8.711011325 8.460333027 8.371130352 8.536072646 157375488 AceB Carbon cycling Carbon degradation others Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 8.441928189 8.16694136 8.49248333 8.068784275 7.928883329 7.878910497 7.597493214 7.615966517 7.884949566 7.838668857 7.752031268 7.867315115 71846680 ureC Nitrogen Ammonification Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 8.308853163 8.148033436 7.612803064 7.953575122 8.04040265 8.127543191 7.921394852 8.396861006 7.888060226 7.819607749 7.973167546 170782088 SMR_antibiotics Antibiotic resistance transporter Clavibacter michiganensis subsp. sepedonicus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 9.974270057 10.12767273 10.12705962 9.676113099 9.745929509 9.87174924 9.733054447 9.510162508 9.886420509 9.860007931 9.830972792 9.855798413 282766125 colonization_factor virulence colonization factor Bordetella pertussis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 9.307828196 9.265904581 9.438290052 8.994484831 8.983815464 8.885627587 8.910500914 9.032957904 8.889125518 9.068275535 9.057716318 8.972944958 157070370 nagG Organic Remediation Aromatics Aromatic carboxylic acid Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 9.001074459 8.860675283 8.726361608 8.503057988 8.285143222 8.366367657 8.637244175 8.089577804 7.989745008 8.157391205 7.966276524 8.419704066 240102660 apu Carbon cycling Carbon degradation Starch Thermococcus gammatolerans EJ3 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus gammatolerans; 8.765111545 8.87865685 9.125888022 8.458430133 8.336690782 8.271764629 8.271457228 8.068522495 7.987268205 8.199596038 8.13854513 8.422749496 87331956 nahA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium superkingdom:Bacteria; 8.60183713 8.430935555 8.66055843 8.091706654 7.729828687 7.827522355 7.683969526 7.62052983 7.959910773 7.69552713 7.569653152 8.18512921 157401497 nifH Nitrogen Nitrogen fixation Methanococcus maripaludis C6 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanococcaceae;genus:Methanococcus;species:Methanococcus maripaludis; 9.727626172 9.886231918 9.829668752 9.210912027 9.226972828 9.375920391 9.409919487 9.238787949 9.259284953 9.15287729 9.227542553 9.511151724 148847197 sigma_24 Stress Sigma factors Planctomyces maris DSM 8797 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces maris; 8.949698786 9.04449055 8.089405411 7.942981427 8.037020474 7.905265767 7.735758689 7.795450882 7.841665479 8.071536449 68345516 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens Pf-5 8.223638584 8.454331838 8.083648178 7.830132955 8.07472621 8.357326082 8.133734739 8.114650605 8.211517226 8.055229717 8.260326632 7.985626126 15678374 tutFDG Organic Remediation Aromatics BTEX and related aromatics Methanothermobacter thermautotrophicus str. Delta H superkingdom:Archaea;phylum:Euryarchaeota;class:Methanobacteria;order:Methanobacteriales;family:Methanobacteriaceae;genus:Methanothermobacter;species:Methanothermobacter thermautotrophicus; 9.102256807 8.702029262 8.636454446 8.530421457 8.257585394 8.160284128 7.903075228 7.780323409 8.227478208 7.934964446 7.648235605 8.328989116 126740695 glnA Stress Nitrogen limitation Roseobacter sp. SK209-2-6 8.899485717 9.205279885 9.306285118 8.667320613 8.871817432 8.741036265 8.611803509 8.639648467 8.861619378 9.013221333 9.039962347 8.582967231 262195735 sigma_70 Stress Sigma factors Haliangium ochraceum DSM 14365 8.634565818 8.531820037 8.552479896 8.617606354 8.758217548 8.002713298 8.240549503 8.317057429 8.23744835 8.70365881 8.682747393 8.245367755 229360700 sigma_38 Stress Sigma factors Pseudomonas fluorescens SBW25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.284989037 8.128055545 7.742017455 7.510464685 7.549681819 7.144112907 7.265826161 7.608104182 7.449586546 7.442867135 91700848 phtA Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 8.860285119 8.768025019 9.021575566 9.022723136 8.97725424 8.725500804 8.827353896 8.993879186 8.696064259 8.845307048 8.874358081 8.825124326 3059192 bphC Organic Remediation Aromatics Polycyclic aromatics Rhodococcus erythropolis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.377334814 8.20289423 7.668379225 8.337237402 8.165788242 7.969173219 8.013776882 8.14206163 8.031695173 7.848442274 7.655964493 139478301 mer Metal Resistance Mercury uncultured soil bacterium superkingdom:Bacteria; 8.61154024 8.520947709 8.196236293 8.246734266 8.222936587 8.317769287 8.349257044 8.019122927 8.14567717 8.121366088 8.040006401 7.888813608 42493191 tfdB Organic Remediation Aromatics Chlorinated aromatics Pseudomonas sp. WZ-2003 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 9.382363404 9.108982353 9.379204667 9.248956159 8.989822521 8.624902463 8.984973708 9.271471322 9.245867605 9.027348538 8.782785345 9.115685456 206679243 cydB Stress Oxygen limitation Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.533640072 8.552870867 8.794872841 7.943989831 7.9714836 8.340801396 8.247929462 7.582325671 8.27902891 8.433476063 8.244183092 118424454 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.411329802 8.736882231 8.579571328 8.903582672 8.85278507 8.753477396 8.172149977 8.877715738 8.542363482 8.66936156 8.821352555 8.832560041 14970545 MFS_antibiotic Antibiotic resistance transporter Erwinia chrysanthemi superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya; 9.267587398 9.042232487 8.715859804 9.015770109 9.123283454 8.326593054 8.974707346 9.211804239 8.508144664 9.077931245 9.103356366 9.229883473 91783171 nagK Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 9.182212452 8.702040506 8.631654375 8.920936159 8.419078159 8.013559511 8.677435448 8.795248388 8.404124333 8.53862646 8.365692074 8.03381506 88941688 ZntA Metal Resistance Zinc Acidiphilium cryptum JF-5 9.292575284 9.09416513 9.21335699 8.628549329 8.717838231 8.853402591 8.475940591 8.641952872 8.591312739 8.577685806 8.835587217 114193137 endoglucanase Carbon cycling Carbon degradation Cellulose Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 8.428973423 8.532805021 8.649092519 8.528847726 8.515167448 8.149441599 8.335253512 8.319614668 8.262719601 8.202400901 7.968470764 7.690536416 89048971 pilin virulence pilin Photobacterium sp. SKA34 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium; 8.163047266 8.306455065 7.553431264 7.374340256 7.450516452 7.323700347 7.029846848 7.428778103 7.387256081 163661512 sigma_24 Stress Sigma factors Methylobacterium extorquens PA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 8.740916274 8.542331666 8.427894204 8.22945948 8.316067904 8.214821506 8.544140278 8.43819716 8.267654689 8.688167164 8.580839599 8.330205051 78046442 Arylest Organic Remediation Aromatics Other aromatics Xanthomonas campestris pv. vesicatoria str. 85-10 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas euvesicatoria; 8.100632393 8.026831246 7.638740178 7.385150126 7.312332413 7.190830677 7.560417093 7.79748459 7.544952154 7.480776611 7.645627021 58271484 endochitinase Carbon cycling Carbon degradation Chitin Cryptococcus neoformans var. neoformans JEC21 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Tremellomycetes;order:Tremellales;family:Tremellaceae;genus:Filobasidiella;species:Filobasidiella neoformans; 8.163935651 8.186580446 7.070365696 7.42609452 7.599411508 7.588413202 6.907180035 7.739720341 7.261225729 7.580893296 4586452 isopullulanase Carbon cycling Carbon degradation Starch Brevibacterium fuscum var. dextranlyticum superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium fuscum; 8.507093638 8.47673599 8.713469612 8.494195837 8.542962489 8.433001868 8.762793812 9.046668041 8.672633078 8.943240734 8.457594361 8.623635021 29160353 exoglucanase Carbon cycling Carbon degradation Cellulose Coprinopsis cinerea superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis; 8.22843465 8.152888868 8.770604891 8.788997848 8.805475496 8.27598581 8.893364485 8.030989883 9.006397069 9.217548002 9.077754079 148843408 gyrB other category gyrB Planctomyces maris DSM 8797 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces maris; 9.704321592 9.690723441 9.635511895 8.91849092 9.225746849 9.146700672 9.407303525 9.611486436 9.168175163 9.247901514 9.28712894 227273381 exochitinase Carbon cycling Carbon degradation Chitin Kribbella flavida DSM 17836 8.609569706 8.679077717 8.439052535 8.773091764 8.780620754 8.611656379 8.669218876 8.495546012 8.713354335 8.503889084 8.548637946 8.112159845 84366046 pcaG Organic Remediation Aromatics Other aromatics Xanthomonas oryzae pv. oryzae MAFF 311018 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 9.468132459 9.328508104 9.413379054 8.705823705 8.691455593 8.837439243 8.775920212 8.801943176 9.058359272 9.127839721 9.178571328 85374038 dnaK Stress Heat shock Erythrobacter litoralis HTCC2594 8.72012195 8.64583793 8.642498741 8.051584114 7.890594602 8.225016861 8.602136596 7.817001677 8.275727012 8.051987023 8.026150811 7.82712026 68348063 MFS_antibiotic Antibiotic resistance transporter Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.566040392 8.427955547 8.503173275 8.180509533 8.036098697 7.691329017 8.312756272 7.886031816 7.910936792 8.055789337 8.008856079 6624271 xylG Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 8.904906572 8.460586247 8.78180819 7.975963104 7.874239011 8.035917521 7.875217372 7.956477583 7.977884186 8.090503494 7.975847193 8.239273276 151474 pilin virulence pilin Pseudomonas aeruginosa superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.798871787 7.399880872 7.234139871 7.734501421 87290775 sigma_24 Stress Sigma factors Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 8.756102506 8.686748901 8.938253398 8.036614695 8.354137729 8.577789745 8.991856863 8.483228824 8.809137996 8.532295125 8.703886292 8.64201875 20521522 arsB Metal Resistance Arsenic Salmonella typhimurium superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 8.249860473 8.573168284 8.542520053 8.078564213 8.604579102 8.350061013 8.102853889 8.801081881 8.433750261 8.603828481 8.611417055 8.497983547 154353329 nmoA Organic Remediation Aromatics Nitoaromatics Bacillus amyloliquefaciens FZB42 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 8.632203907 8.794521882 8.520202593 7.806871393 8.077441173 8.436832849 8.35381855 7.976782288 8.729689381 8.457200476 8.22254258 8.548497742 76667453 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 9.735983886 9.65448601 9.837203813 9.20162798 9.079574538 9.023882345 8.855184074 8.89270847 8.724700089 9.061787597 9.061754729 9.263860388 62896434 merT Metal Resistance Mercury Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.543278574 8.392013429 8.684904535 7.72789832 7.556791704 7.702846734 8.020018731 7.465972277 8.643908901 7.584801516 7.682640951 7.713989457 194099990 gyrB other category gyrB Neisseria gonorrhoeae NCCP11945 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria gonorrhoeae; 9.563168517 9.749666253 9.604963764 9.521051325 9.600891629 9.369229829 9.714407406 9.768511878 9.486454189 9.73835765 9.699431724 9.58058114 224472742 phenol_oxidase Carbon cycling Carbon degradation Lignin Laccaria bicolor superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria; 8.47821546 8.133879315 8.19170303 8.013700544 7.879078154 8.220991058 8.422100545 8.3292863 7.893479118 8.084228124 196478574 ppx Phosphorus Phosphorus utilization Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 9.509094248 9.38839249 9.489380666 9.197382282 9.207344393 9.027495525 8.793029955 8.904701765 8.970339147 8.884972855 9.199630065 111283404 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 9.20861468 9.125107459 8.899766899 8.563476193 8.690646069 8.683873218 8.734893378 8.563585463 8.706815672 8.566928737 8.634421952 8.539639865 223890644 sigma_24 Stress Sigma factors bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 8.96489109 8.85860761 8.890200498 8.632013468 8.684962401 8.546613646 8.576612518 8.714654433 8.178861007 8.773987536 8.713088382 8.94877771 197103197 fnr Stress Oxygen stress Phenylobacterium zucineum HLK1 8.699136205 8.552870867 8.802691263 8.090589513 7.982850644 7.991457033 7.938943059 8.117626655 8.186138469 7.978132058 8.058711426 8.343964031 24421329 nirS Nitrogen Denitrification uncultured organism 7.945030298 7.853645752 7.555006868 7.32031698 7.304048441 6.636148053 6.861028976 7.875430893 8.315073852 6.971340091 7.450017667 159902812 fnr Stress Oxygen stress Prochlorococcus marinus str. MIT 9211 9.084484364 9.134233463 9.088807629 8.602250458 8.391698406 8.255208542 8.074526939 7.990081429 8.398725189 8.100280384 8.08992115 8.551610576 76667345 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 9.710725344 9.920027218 9.640567356 9.232457417 9.364411589 9.509384136 9.98274271 9.839491019 9.84499814 9.489145247 9.481873646 9.584675804 77995717 cydB Stress Oxygen limitation Carboxydothermus hydrogenoformans Z-2901 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Carboxydothermus;species:Carboxydothermus hydrogenoformans; 9.405477549 9.133215869 9.243764932 8.763296436 8.89121797 8.862049882 8.785851699 8.744186908 9.055618735 8.832319606 9.023950129 8.753307403 55980501 sigma_70 Stress Sigma factors Thermus thermophilus HB8 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 8.411768538 8.683161063 8.266709211 8.228689837 8.155275522 8.420676837 8.698414332 8.360915097 8.305019697 8.260184276 8.277478269 8.238854509 108803721 sigma_70 Stress Sigma factors Rubrobacter xylanophilus DSM 9941 8.658671306 8.698701649 8.797413059 8.122865034 8.300629789 8.216183274 8.418265182 8.5188141 8.319183844 8.539677808 8.376439317 8.254479938 149783065 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.070648469 8.910040019 8.984976394 8.645746731 8.447623266 8.702824039 8.751268205 8.370406483 8.324953289 8.689116691 8.672900602 8.413477642 113526969 AceB Carbon cycling Carbon degradation others Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.730802773 8.217998856 8.484528703 8.861582065 8.373109076 8.285675122 8.383151411 8.385728033 8.027721675 8.296054647 8.169375095 8.405279798 222479022 amyA Carbon cycling Carbon degradation Starch Halorubrum lacusprofundi ATCC 49239 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 8.827743331 8.889625087 8.927151856 8.49276626 8.334342529 8.312917821 8.22697709 8.468529415 8.548543619 8.337014328 8.085513979 8.565380251 2426 phenol_oxidase Carbon cycling Carbon degradation Lignin Emericella nidulans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella; 7.73163948 7.860227779 7.621343777 7.564992531 7.684079221 8.06521101 7.818492124 7.903763732 7.984301403 124261362 pilin virulence pilin Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 8.30940729 8.700489187 8.570094161 7.911578678 8.907665634 9.158316696 8.687008815 9.203176265 8.730631974 8.611680296 8.988336474 218673150 sigma_24 Stress Sigma factors Rhizobium etli GR56 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.775468168 8.423935651 8.259226076 8.074511619 8.050824737 8.086376093 8.507807801 8.388240696 8.531694062 8.662919341 8.310876363 260880311 amyA Carbon cycling Carbon degradation Starch Vibrio parahaemolyticus AN-5034 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 8.604177664 8.966283254 8.232279855 8.159924538 7.91517855 7.725010785 7.729439398 8.049097522 7.809311152 7.770653703 8.205116737 118570209 pcc Carbon cycling Carbon fixation Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 10.01379131 9.876401732 9.918344512 10.1819475 10.33180967 10.21914068 10.10981868 10.7258109 10.23900457 10.47539392 10.26601974 10.46127592 85825132 pheA Organic Remediation Aromatics Other aromatics Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 9.392871228 9.248880698 10.04640107 9.374856274 9.393041404 9.106528491 9.352740873 9.073299203 9.442526018 9.536077765 9.887835739 9.300185273 283781831 sigma_24 Stress Sigma factors Pirellula staleyi DSM 6068 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Pirellula;species:Pirellula staleyi; 8.658499973 8.287863436 8.458280587 8.328174441 8.123275135 7.856422627 7.613449498 7.806533936 8.617080683 7.981244201 7.662808114 8.009209449 58616380 TerZ Metal Resistance Tellurium Azoarcus sp. EbN1 8.595607743 8.790396727 8.846937229 8.11197807 8.158639271 7.628325822 8.666140784 8.078432029 8.7555008 7.981280877 8.277616836 7.615883062 22294339 sigma_70 Stress Sigma factors Thermosynechococcus elongatus BP-1 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Thermosynechococcus;species:Thermosynechococcus elongatus; 8.573355991 8.725922863 8.919882141 8.881307688 8.869934386 8.971708881 8.544410992 8.430348997 8.623465534 8.649599013 8.683024815 94471239 narG Nitrogen Denitrification uncultured bacterium 8.839861534 9.325947299 9.026591927 8.797727713 9.139066116 9.647170521 9.780658401 9.727643443 9.446916379 9.524867219 9.475475678 9.68796751 56687026 phtA Organic Remediation Aromatics Aromatic carboxylic acid Synechococcus elongatus PCC 6301 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus;species:Synechococcus elongatus; 8.618199754 8.865861628 8.720468338 8.179921281 7.759336501 7.855361282 7.667724619 8.012892126 213923433 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Pseudomonas syringae pv. tomato T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 8.660451733 8.418007251 8.338384406 8.367928458 7.894906754 8.448193764 8.25628273 8.585322413 8.379995802 8.370269842 8.022035292 269217295 nrfA Nitrogen Dissimilatory N reduction Slackia exigua ATCC 700122 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Slackia;species:Slackia exigua; 8.790671121 8.742631389 8.504368872 8.413157251 8.637860665 9.016394005 8.740650207 8.555957319 8.785394933 8.470259294 8.825448405 8.520348154 145596916 exochitinase Carbon cycling Carbon degradation Chitin Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 9.563004829 9.609848634 9.512285136 8.921282645 8.870157029 8.865943486 9.059743077 8.968054958 8.975002835 8.918485439 9.113815762 9.125525952 167348099 pcc Carbon cycling Carbon fixation Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.411601833 8.408252853 8.488925579 8.039825887 8.204662127 8.194468369 8.16555086 8.379456834 8.443141613 8.68120194 8.538398805 8.51581465 196194618 SMR_antibiotics Antibiotic resistance transporter Alcanivorax sp. DG881 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 8.645549483 8.672128764 9.104909458 8.479480234 8.278710077 7.908134745 7.103418608 7.88995775 7.994417157 7.850927913 8.027649409 150390747 sigma_38 Stress Sigma factors Alkaliphilus metalliredigens QYMF 8.551078772 8.484913002 8.352240016 8.468074798 8.621353415 8.3103006 8.583664303 8.364062593 8.022039374 8.381473397 8.317547719 8.225181398 260902639 SMR_antibiotics Antibiotic resistance transporter Vibrio parahaemolyticus AQ4037 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 8.674852004 8.763139221 8.734851583 8.264824465 8.292476836 8.102806115 8.227886872 8.646184206 8.420276735 8.463938444 8.470534107 8.627495122 2764840 terminase_large_subunit Bacteria phage REPLICATION Bacillus phage SPP1 order:Caudovirales;family:Siphoviridae;genus:Lambda-like viruses; 7.432082093 7.426460667 7.251434279 7.299550435 7.13013313 7.754327236 110821897 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 9.006539412 8.877988238 8.907099993 9.303206956 9.127550834 8.653625806 8.853629362 9.440115578 9.007727942 9.103702417 8.899498581 9.223983432 69933167 pcaG Organic Remediation Aromatics Other aromatics Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.770105547 8.889098864 8.604017539 8.927283817 8.876724033 8.558433161 9.026935327 9.016809785 8.485284782 8.782545757 8.630805468 8.796742852 254948566 mannanase Carbon cycling Carbon degradation Hemicellulose Dyadobacter fermentans DSM 18053 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 9.952421236 10.2084863 9.831802449 8.875469411 9.643430587 9.735498573 9.867908187 9.105310545 9.988754012 9.176781367 9.726044781 9.277294127 110821616 Catechol Organic Remediation Aromatics Other aromatics Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 9.448007479 9.624383227 9.645310052 8.610356077 8.686607773 8.857939931 8.843429215 8.377033456 8.832114117 8.643356828 8.652021044 8.903664575 147668923 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. BAV1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 6.968509087 7.598662894 194343095 TerD Metal Resistance Tellurium Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.582972163 8.389421787 8.454453922 8.301243377 8.380517984 8.275834194 8.322961132 8.49892061 8.604076879 8.545267896 8.580284015 8.477724127 260402796 cydB Stress Oxygen limitation Dialister invisus DSM 15470 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Dialister;species:Dialister invisus; 8.436935837 8.320267427 8.522855618 7.516571585 7.562753755 7.689342126 7.444444799 7.467445133 7.445984432 78059728 silC Metal Resistance Silver Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.616514008 8.733807528 8.92420748 8.079292622 8.104081879 8.380156496 7.615231083 8.679960484 8.137985766 8.408188585 8.527111368 161330814 nrfA Nitrogen Dissimilatory N reduction Shewanella benthica KT99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella benthica; 8.168332401 7.82364272 8.246595448 7.630565326 7.028427613 7.519044805 7.702602361 7.145701224 8.137277759 7.532520926 7.169534381 7.456088377 171464945 mer Metal Resistance Mercury Dyella sp. Is-D134 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Dyella; 9.163833794 8.853740584 9.229372853 8.62642259 8.387541169 8.461685354 8.385470031 8.561739815 8.33012449 8.458399093 8.511128897 8.811957296 27376338 phn Organic Remediation Herbicides related compound Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.608388399 8.331801069 8.428750726 8.861874911 8.836863253 8.80957351 8.006208049 8.84554997 8.403214022 8.629592888 8.721789531 8.106560899 169638418 pstB Stress Phosphate limitation Candidatus Desulforudis audaxviator MP104C 8.17016613 8.079251087 7.616651573 7.758261986 7.605097664 8.138137683 8.141979127 8.308594085 86571765 CODH Carbon cycling Carbon fixation Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.372035826 8.580875367 8.025820453 8.044880772 7.999269657 7.593375826 7.988778518 8.421086749 8.30316878 8.29905546 8.41773665 8.540968833 114706054 hrcA Stress Heat shock Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 9.850135077 9.8776124 9.810556558 9.328586756 9.237054921 9.253079434 9.06278824 9.063946073 9.240437796 9.235449741 9.274956352 9.568614073 16329540 obgE Stress Radiation stress Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 8.653682966 8.234896882 8.392456618 8.210486481 8.112028389 7.940043281 7.778815428 7.638068685 8.111791804 7.620600491 7.787828749 8.124535466 146308004 cytochrome Energy process Energy process Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 8.266960617 8.216539701 8.187208512 8.36622692 8.236074188 8.417109017 8.152040119 8.114545822 7.902702102 7.960360146 7.716558754 83309738 gyrB other category gyrB Magnetospirillum magneticum AMB-1 8.591423344 8.690102256 8.362104879 8.617654107 8.691945331 8.33611028 8.479476655 8.706634447 8.58756858 9.002775566 8.96287067 8.806579943 116695183 alkK Organic Remediation Others Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 9.309899472 9.104838789 9.446163427 8.599565148 9.288144164 9.264314308 8.855993985 9.18818688 9.44740404 9.298678679 9.540054374 9.159109166 167352986 cytochrome Energy process Energy process Shewanella halifaxensis HAW-EB4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella halifaxensis; 8.413863205 8.418066925 8.334077747 7.81997611 7.446219723 7.703830419 7.944735489 7.334017887 7.500459377 7.891075354 7.756350479 7.927676009 197710240 TerD Metal Resistance Tellurium Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 9.732455443 9.87357576 9.707457497 8.96503879 9.33333051 9.333136013 8.886660345 9.352931179 9.057517824 9.235067409 9.382169667 9.438784214 219949607 sigma_24 Stress Sigma factors Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 8.384374803 8.517697959 8.335513255 8.122045155 8.701397475 8.359385596 8.523862295 8.696787259 8.345170035 8.825204761 8.418901756 239931244 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Streptomyces ghanaensis ATCC 14672 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 8.511783233 8.287480986 7.977862447 8.153832286 8.294229253 8.093461426 8.230445783 8.030410601 8.247082011 67939261 CopA Metal Resistance Copper Chlorobium phaeobacteroides BS1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 9.417269118 9.288965379 9.356787728 8.605045525 8.744803481 8.677122327 8.916866023 9.184345467 8.631709007 9.147782622 9.20640532 9.31089587 126731646 pcpE Organic Remediation Herbicides related compound Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 8.498120735 8.477706438 8.372845943 8.47339724 8.260382585 8.098057508 8.541529573 8.493760269 8.422004191 8.034896156 8.05295781 8.147336643 46447132 grpE Stress Heat shock Candidatus Protochlamydia amoebophila UWE25 superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Parachlamydiaceae;genus:Candidatus Protochlamydia;species:Candidatus Protochlamydia amoebophila; 7.248566927 6.903902993 146323637 glnA Stress Nitrogen limitation Aspergillus fumigatus Af293 8.423178777 8.356375142 8.5018171 8.079361331 8.186628831 8.582769569 8.910686156 8.416196841 8.5105926 8.255102825 8.272923148 8.387857134 213974283 dmsA Organic Remediation Others Salmonella enterica subsp. enterica serovar Typhi str. AG3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 8.159305003 8.395842563 8.322589048 8.518349595 8.571705171 8.293969771 7.975854051 8.497687459 8.642575159 8.500623022 8.711357865 241214265 pstB Stress Phosphate limitation Asticcacaulis excentricus CB 48 8.687930155 8.335883581 8.173393844 7.663807537 7.787147687 7.892991629 7.864013877 7.785589301 7.842114894 7.82467549 8.051110465 124491660 exoglucanase Carbon cycling Carbon degradation Cellulose Chaetomium thermophilum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium; 7.258168272 7.355888024 7.501922642 7.133653782 7.763045603 7.335619956 7.679124646 268317380 pstC Stress Phosphate limitation Rhodothermus marinus DSM 4252 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 8.719361121 8.732974759 8.750273153 8.292538567 8.253725255 8.714100497 8.579661167 8.231315372 8.551469106 8.176785627 8.196827305 8.372643103 154158343 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 9.531940779 9.407857248 9.358592446 9.024037358 9.106135987 8.683810719 8.834424175 9.090851876 9.007850191 9.210716343 9.088316292 9.027994435 118745139 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 8.812392713 8.60190982 8.803026034 8.003943832 7.831728484 8.157583879 7.68859629 7.935324812 8.170915731 8.126306383 7.783884606 8.232622591 262371411 vdh Carbon cycling Carbon degradation Others Acinetobacter johnsonii SH046 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter johnsonii; 8.749665246 8.965014679 8.65659797 8.337588427 7.924474302 8.478843575 8.838478493 8.560005173 8.943658598 8.044296703 7.837735304 8.11889788 68250353 Catechol Organic Remediation Aromatics Other aromatics Pseudomonas sp. M1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.299925312 8.389790232 8.130815163 7.709770006 8.040270719 8.105596966 8.323750427 7.224924705 7.784519132 7.782637558 7.806749442 94314430 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.732115549 8.173108166 8.564625661 7.98844769 7.739261658 7.654309802 7.598797222 7.33484988 7.67693994 7.602455307 7.521457853 8.055644499 255274115 pstC Stress Phosphate limitation Hyphomicrobium denitrificans ATCC 51888 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 8.420886247 8.412650749 8.395768705 8.351669936 8.170267022 8.251414756 8.280821196 8.094082617 8.200418697 8.20559336 8.166620511 7.924159237 77682720 catB Organic Remediation Aromatics BTEX and related aromatics Bradyrhizobium sp. UO superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.227148083 7.965814675 7.543676183 7.522176611 7.582353161 7.564313626 7.352148328 7.818160633 7.80749101 8.037223268 8.163350922 114567099 grpE Stress Heat shock Syntrophomonas wolfei subsp. wolfei str. Goettingen superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Syntrophomonadaceae;genus:Syntrophomonas;species:Syntrophomonas wolfei; 9.376288923 9.359243502 9.607099127 9.337075658 9.157454332 9.389458967 9.277658038 9.55473102 9.185147389 56314677 nagI Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 8.682892013 8.410345188 8.677567166 8.590195877 8.205706537 7.818805828 8.256491449 8.718308605 8.60473272 8.419600534 8.529220843 46101727 Catechol Organic Remediation Aromatics Other aromatics Ustilago maydis 521 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Ustilaginomycetes;order:Ustilaginales;family:Ustilaginaceae;genus:Ustilago;species:Ustilago maydis; 9.462374586 9.589394898 9.346308263 9.460419592 9.474234089 9.553211178 9.308608315 9.833536771 9.677077481 9.862050371 10.12532709 9.597366607 99080404 sigma_32 Stress Sigma factors Ruegeria sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8.126835596 8.284070312 7.878257444 8.088340403 8.018010488 8.088352622 8.119602592 8.328578602 8.305850716 8.014826365 119377281 pimF Organic Remediation Aromatics Aromatic carboxylic acid Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.574523473 8.901459414 8.897665839 8.363594381 8.076287677 8.199918625 8.420566559 7.862066248 8.637227775 7.845147881 8.213943627 8.013362764 83575606 katE Stress Oxygen stress Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 8.746807636 8.349191595 8.643771566 7.962313514 8.179429848 8.20359428 8.533789572 7.582913196 8.56072374 8.096571257 7.905619539 8.242898749 17427727 pilin virulence pilin Ralstonia solanacearum GMI1000 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 10.71439227 10.66280122 10.75440029 9.81204387 9.838562963 9.897327131 10.16325123 9.753263551 10.02536026 10.07598484 10.30414641 10.28416129 83573056 glnA Stress Nitrogen limitation Moorella thermoacetica ATCC 39073 8.296111177 8.615915401 8.678814467 8.508204935 8.300871924 8.694844439 8.578711854 8.494090638 8.784647022 8.569214769 8.427755669 110599599 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.29846232 8.324641364 7.597160534 7.652888805 7.841239035 7.217326311 7.190083892 7.31383886 7.542435106 7.542711441 218533296 pulA Carbon cycling Carbon degradation Starch Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 8.885647993 8.799313136 8.782808054 8.365452767 8.246001402 8.363667604 8.0970368 8.028904771 8.194748829 8.066418561 8.071389596 8.374760275 237879597 sigma_70 Stress Sigma factors Burkholderia glumae BGR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia glumae; 8.890983908 8.613341063 8.769667074 8.750937921 8.499443561 8.53087769 8.539183288 8.79473199 8.717904523 8.887700668 8.834529468 8.627082043 109897169 xylanase Carbon cycling Carbon degradation Hemicellulose Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 9.159569071 9.187735359 9.32664562 8.529438523 8.533165118 8.533087128 8.844005135 8.324854364 8.913263733 8.820770258 8.639436375 8.831567324 108743445 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Streptomyces kanamyceticus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.885325668 8.873342629 8.892895355 8.601013661 8.756461629 8.635702803 8.78417145 8.77030351 8.914367625 8.895686924 8.605033552 8.556377239 222106171 vdh Carbon cycling Carbon degradation Others Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 8.324589134 8.270405369 8.052457727 8.105148527 7.844289844 8.206381048 7.5592566 7.868757679 8.169204555 8.204912354 8.070903747 66043275 gyrB other category gyrB Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 7.883784011 8.185914868 7.179673642 7.312072377 7.509241995 7.545267738 7.248790723 7.620286171 7.594039342 7.218426541 7.680483171 227329114 nrfA Nitrogen Dissimilatory N reduction Pectobacterium carotovorum subsp. carotovorum WPP14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 8.17608043 8.415392411 8.18452371 8.007601155 8.362802789 8.675943804 8.917185703 8.87186339 8.871263233 9.045232899 8.902986082 9.129952136 119026319 CopA Metal Resistance Copper Bifidobacterium adolescentis ATCC 15703 8.498724143 8.464354407 8.531212111 8.163879053 8.017049088 8.186095591 7.990697579 7.931204731 8.085698555 8.020535568 8.206756513 7.972592891 99083167 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.53824291 8.27931609 8.776901973 8.030837804 7.697209071 7.902937448 7.456650133 7.361171216 7.823028839 7.604659581 7.488382262 7.694653527 210159308 obgE Stress Radiation stress Collinsella stercoris DSM 13279 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella stercoris; 9.082171438 9.016787845 8.652009207 8.71260205 8.80866114 8.982926128 8.69285476 8.950217334 8.663155714 8.851719534 8.458678146 89052495 gyrB other category gyrB Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 8.269168799 8.795545397 8.922536792 8.346223479 8.211381086 8.362270088 8.844926971 8.59136498 8.853341772 8.35282174 8.298428454 8.322477783 88811018 glnA Stress Nitrogen limitation Nitrococcus mobilis Nb-231 8.554324902 8.776323918 8.614408393 8.068715314 8.402583238 8.611712785 8.719800219 8.060841699 8.728797591 8.168171377 8.640715563 8.238825859 257064130 SMR_antibiotics Antibiotic resistance transporter Slackia heliotrinireducens DSM 20476 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Slackia;species:Slackia heliotrinireducens; 9.137484432 9.028193691 9.209851311 8.699438405 8.591943481 8.499528088 8.136349746 8.246917804 8.554434366 8.467410726 8.43512005 8.5312561 218771736 bphA Organic Remediation Aromatics Polycyclic aromatics Pseudomonas aeruginosa LESB58 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.580877759 8.481914817 8.476123564 8.631697601 8.392498537 8.054290397 8.598491654 8.54940084 8.381425665 8.610701064 8.321171089 8.287943708 40740293 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 8.405793612 8.604717982 8.724425633 8.710540367 8.740597213 8.461014511 8.798117552 8.767711905 8.617104906 8.740338143 8.800755255 8.457845789 18893674 trzA Organic Remediation Herbicides related compound Pyrococcus furiosus DSM 3638 8.698774145 8.600568029 8.854707815 8.154376469 7.867715491 7.632975446 7.859056176 7.259313595 7.717667576 7.86519243 8.109058781 221068250 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.601537252 7.477270387 7.497213586 7.218054967 7.78943864 7.901329292 7.431678367 7.842443547 7.60271297 118503756 MFS_antibiotic Antibiotic resistance transporter Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 9.259832762 9.330466355 9.46793377 8.788441162 8.827178872 8.638247954 8.694056299 8.710405782 8.98799016 9.190518158 9.078234375 9.004106794 218229782 amyA Carbon cycling Carbon degradation Starch Roseburia intestinalis L1-82 8.314071223 8.054333552 7.36404934 7.47659196 7.188800917 7.267906382 iegHydrogenase3 hydrogenase Energy process Energy process 9.433216134 9.390742049 9.68218396 8.694981696 8.684110596 9.142333226 9.445129207 9.178277316 9.302294286 9.166820887 9.243142879 9.379668631 116202717 Catechol Organic Remediation Aromatics Other aromatics Chaetomium globosum CBS 148.51 8.869253543 8.861154424 8.777003777 7.671211403 7.705406378 7.794509293 7.655826563 8.138298823 7.96152333 8.181561461 121705728 endochitinase Carbon cycling Carbon degradation Chitin Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 8.253197072 8.022019767 8.264045658 8.480537893 8.884822267 8.595933441 8.003902183 8.766017331 8.058057395 8.558879362 8.765665843 8.626171829 110821154 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 9.228973777 9.19386397 9.319881331 9.220172675 9.129201053 8.762039712 9.204221739 9.663864226 9.203742692 9.385580166 9.032444334 9.306628196 116620758 exaA Organic Remediation Chlorinated solvents Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 9.398146179 9.505210761 9.773809735 9.065333428 9.145904783 8.984155344 9.1717159 9.82315482 9.093565197 9.604812194 9.409460303 9.6851981 26989931 vanA Carbon cycling Carbon degradation Others Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.632661272 8.771368566 8.515420895 8.073360342 8.44165972 8.512247353 8.678472012 8.563410598 8.821326873 8.561431405 8.64896333 8.484809413 119896759 pimF Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 9.198299515 9.305433319 9.028085265 8.531267202 8.248572397 9.057374008 9.141732023 8.738006951 9.515395144 8.938894101 8.887764974 9.043185269 170739619 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Methylobacterium sp. 4-46 7.216941354 7.04531838 7.571550667 73538232 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 8.358303276 8.323503738 8.228416908 8.16304292 8.028589869 7.932592016 8.298382998 8.466596925 8.305734082 7.883454831 8.085985834 72162954 pcc Carbon cycling Carbon fixation Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 9.357404793 9.94087391 9.341790461 8.921176113 9.114776662 9.765701948 10.12814268 9.720275968 9.581791551 9.319071659 9.573812854 9.581872717 71736676 ppk Phosphorus Phosphorus utilization Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 8.491378335 8.413235653 8.605883973 8.064185354 7.748822781 7.881079382 7.807259162 7.642160936 7.815478003 7.753933065 7.540316809 90022149 xylA Carbon cycling Carbon degradation Hemicellulose Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 7.971798595 7.819836733 6.923486891 7.004324247 91798038 exaA Organic Remediation Chlorinated solvents Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 9.212533889 8.993326515 9.366386014 8.694699131 8.569104987 8.589090536 8.499837283 8.228756442 8.458203617 8.49092981 8.607807722 8.648150219 119386259 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.836295693 8.735807715 8.577856987 8.377667239 8.514835211 8.309012089 8.223303025 8.434865012 8.962039934 8.720013901 8.86011539 8.394778021 118706429 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.966202191 8.803564121 9.020269524 8.669910487 8.463204999 8.158075465 8.34524322 8.355309548 8.549273403 8.337678924 8.19493094 8.423540668 90419867 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 8.329964003 8.652115647 8.435863066 8.053576748 8.182201554 8.105437029 7.56009416 7.76480617 7.80770563 7.899538518 8.113434599 7.984271235 38489891 hly virulence hemolysin Vibrio vulnificus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.721107636 8.462257975 8.788264344 8.03004731 7.948061444 8.001760242 7.4991872 7.624154532 7.989128367 7.880690789 8.022850994 8.094747129 118174806 scnABC Organic Remediation Others Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.640502076 8.544549642 8.270435061 8.343065718 8.339028913 8.257238929 8.465019895 8.539080927 8.756192327 8.700988904 8.390402166 119537378 mannanase Carbon cycling Carbon degradation Hemicellulose Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 9.056977485 9.211416958 8.915089265 9.099051063 8.974587318 8.74917426 9.030555455 9.133379328 9.126718232 9.197509549 9.10188544 9.062949054 219859257 sigma_70 Stress Sigma factors Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 8.420781917 8.129707208 8.40363632 8.5038261 8.392667246 8.591508548 8.274179605 8.756885527 8.485368626 8.80555179 8.207936391 34330308 ChrA Metal Resistance Chromium Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 9.357561552 9.214540404 9.380318875 9.215893963 9.244449531 9.03232883 9.199717608 9.752115281 9.196362323 9.597485485 9.501909521 9.656215206 121611099 pcc Carbon cycling Carbon fixation Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 8.652290589 8.267556178 8.265277489 8.42418625 8.451933026 8.289878911 8.549871126 8.557982525 8.722327846 8.625733089 8.329960515 8.338946398 134288165 ChrA Metal Resistance Chromium Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 10.25472858 10.16455376 10.07589689 10.15118406 10.32980227 10.05559073 10.19352904 10.3937947 10.36555181 10.28883433 10.36259132 10.31932107 148657926 pcc Carbon cycling Carbon fixation Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 10.46912416 10.3497656 10.41119247 10.22273965 10.31149156 10.28155046 10.26296715 10.40215451 10.18333741 10.21378993 10.20284879 10.39435078 146147086 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 9.470871254 9.511747481 9.532225336 8.510676229 8.557651113 8.662925412 8.690637839 8.262409642 9.06121448 8.624310448 8.637052724 8.992617693 219950530 ChrA Metal Resistance Chromium Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 8.580529514 8.271131533 8.730458282 8.514524697 8.530578917 8.250359309 8.679413622 8.372215022 8.426101257 8.737351531 8.164829822 148553976 exaA Organic Remediation Chlorinated solvents Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 7.97166236 8.132272127 7.951748637 7.942399256 7.839218117 7.573641906 8.024662395 7.924845089 7.985129982 7.967164055 7.872336992 149820984 tftH Organic Remediation Aromatics Chlorinated aromatics Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 8.989685053 8.567012916 8.530931413 8.388406 8.302011791 8.169063309 8.010097843 8.529796984 8.732566365 8.443598326 8.335668113 8.497644423 108765317 fnr Stress Oxygen stress Rubrobacter xylanophilus DSM 9941 8.865816233 8.728625443 8.926308351 8.595833441 8.465326783 8.31425012 8.273140427 8.577313409 8.744470663 8.456891757 8.183833833 8.418314129 239629045 ara Carbon cycling Carbon degradation Hemicellulose Clostridiales bacterium 1_7_47_FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales; 8.613442365 8.701641653 8.920138545 8.369905887 8.149068394 8.119768259 7.762774201 7.641483292 8.329466515 8.212654128 7.9795932 8.227475714 146406578 sigma_24 Stress Sigma factors Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.416294126 8.344055138 8.42128786 8.438627585 8.471265272 8.501954125 8.469168109 8.749412117 8.599027161 8.597726587 8.272514524 87286689 sigma_24 Stress Sigma factors Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 8.398085431 8.756358762 8.314327253 8.075425528 8.010018995 8.240309659 8.850237409 8.168685808 8.685130367 8.006533713 8.146758851 7.863481576 157964040 pstC Stress Phosphate limitation Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 8.407971259 7.933348691 8.425718028 8.562306048 8.513631159 8.226688833 8.425329689 8.513116701 8.318709968 8.435456471 8.066466831 8.185997982 61393984 terminal_protein_linear_DNA_phage Bacteria phage REPLICATION Enterobacteria phage PR3 family:Tectiviridae;genus:Tectivirus;species:Enterobacteria phage PRD1; 9.280499876 9.010359314 9.337470114 8.827189858 8.89994183 8.5999324 8.909775448 9.224834597 8.480494732 9.070767748 8.984745174 8.886927456 184199998 alkK Organic Remediation Others Kocuria rhizophila DC2201 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 8.547661238 8.729603914 8.738269816 8.774339839 8.918814601 8.720685586 8.594171344 8.982997824 8.715283199 8.883263864 8.656222295 8.504897355 256804271 glx Carbon cycling Carbon degradation Lignin Streptomyces viridochromogenes DSM 40736 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 8.471808126 8.29146443 8.263110156 8.022834584 7.913735253 7.530476408 7.7864657 7.565972891 7.914880118 149358038 phoB Stress Phosphate limitation Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 8.917069869 8.788441101 8.331975193 8.664568333 9.040184862 8.806711447 9.515979814 9.297226197 8.958004052 9.344675264 8.779055882 38199526 pcc Carbon cycling Carbon fixation Corynebacterium diphtheriae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium; 7.299992957 7.287549516 7.003851361 56679414 AceB Carbon cycling Carbon degradation others Ruegeria pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 8.287048473 8.127115713 8.384622648 8.123939655 8.35563225 8.137242774 8.132326453 8.353980634 8.352953526 8.436547085 8.365031581 8.230892591 168199246 nhh Organic Remediation Aromatics Nitoaromatics Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 9.486771084 9.214732145 8.840115693 9.483205615 9.254421307 9.082033363 9.768401161 9.566552051 8.967705005 9.231240644 9.091992684 9.427690243 221068516 TehB Metal Resistance Tellurium Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 9.86127219 10.1259474 10.03540183 10.63401182 10.64769145 10.56589461 10.0022507 10.65627045 10.15229209 10.26278863 10.32216053 10.19200672 227548547 AceB Carbon cycling Carbon degradation others Corynebacterium lipophiloflavum DSM 44291 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium lipophiloflavum; 8.308882316 8.240347859 8.358350493 8.339232037 7.52313404 8.40430895 7.435010144 7.357669739 7.739509147 46197414 AceA Carbon cycling Carbon degradation others Thermus thermophilus HB27 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 8.177329739 7.884126163 7.399517056 7.513988552 8.137106296 8.026952304 8.201228255 8.225874412 8.159246996 121589793 BchY other category chlorophyllide reductase Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 9.344159731 9.288843573 9.290683731 8.792431134 8.636464216 8.541081985 8.609167791 8.624662155 8.430697531 8.711330759 8.728498929 8.887445446 71736436 AceB Carbon cycling Carbon degradation others Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 8.595388709 8.83962734 8.606359439 8.107940956 8.170645203 8.437824287 8.754012796 7.702327311 8.716302342 8.151026322 7.965307057 8.347499637 67153719 nmoA Organic Remediation Aromatics Nitoaromatics Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 8.519104333 8.481550803 8.313097057 7.944738378 8.417786219 8.179432809 8.373384963 8.146795616 8.606227779 8.107915946 8.171795258 8.223767912 154303275 katE Stress Oxygen stress Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 8.048282404 7.970908819 7.53979137 7.639449531 7.452161943 7.584585913 7.592620662 7.795705186 7.739250568 7.473220132 7.651361417 169757337 pstA Stress Phosphate limitation Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.208336921 8.360018812 8.335691297 7.828813303 7.710900538 7.904196061 8.229927832 7.979258487 8.335512874 7.670426614 7.760532559 7.708968144 34483462 nifH Nitrogen Nitrogen fixation Wolinella succinogenes superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Wolinella; 9.145902895 9.065691901 9.17961627 8.495975427 8.548882146 8.562333622 8.436078124 8.576790573 8.493524129 8.502533469 8.583835677 8.851915739 149143993 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.242301177 8.340144753 8.289138587 8.12039761 8.468046491 8.370929946 8.064055863 7.973389313 8.116677904 254385517 pstC Stress Phosphate limitation Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.763054446 8.86242778 8.934439761 8.690825087 9.035604756 9.135825248 9.031401472 9.477649124 8.871705309 9.195766581 9.216711426 8.947684315 85704032 pcaG Organic Remediation Aromatics Other aromatics Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 9.103316251 8.929026525 9.079984358 8.88742155 9.055535457 8.938450643 9.149135578 9.421783941 8.979840453 9.46283915 9.401275744 9.34997465 150385470 gyrB other category gyrB Victivallis vadensis ATCC BAA-548 superkingdom:Bacteria;phylum:Lentisphaerae;family:Victivallaceae;genus:Victivallis;species:Victivallis vadensis; 8.145912528 8.338415576 8.644846725 7.815462358 8.039898455 8.026468439 8.238740119 7.024717353 8.526812277 7.629303545 7.435141304 7.726771246 108462113 SMR_antibiotics Antibiotic resistance transporter Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 8.685737867 8.711314833 8.497616897 7.934683725 7.98731614 8.11978138 8.395672584 7.666096822 8.269183128 7.902803404 8.239817437 7.786334448 214030581 ureC Nitrogen Ammonification Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.211777241 6.988028854 7.687772826 7.496337422 7.566195375 7.730527234 7.691834105 184185951 carA Organic Remediation Aromatics Heterocyclic aromatics carbazole-degrading bacterium CAR-SF superkingdom:Bacteria; 8.322125991 8.180685582 8.568692606 7.638167189 7.5837933 7.637578159 7.626042507 7.194012213 7.841608446 7.524097386 7.548339447 7.857216253 91712737 phoB Stress Phosphate limitation Methanococcoides burtonii DSM 6242 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanococcoides;species:Methanococcoides burtonii; 7.190437049 6.698862483 7.125607238 33415260 APS_AprB Sulphur adenylylsulfate reductase Thiobacillus denitrificans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 8.305414539 8.166327373 7.681287783 7.82040805 7.267197646 7.899068382 7.694963348 7.564398899 7.803906999 63256204 phn Organic Remediation Herbicides related compound Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 9.263186022 9.261898717 9.312277874 8.840467613 8.847899719 8.613425162 8.812866754 9.128130494 8.951481657 8.899635125 9.086685825 9.064510459 256362025 sigma_24 Stress Sigma factors Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 9.700798409 9.607630355 9.379650505 9.066066014 8.988692868 8.949677081 9.177135873 8.76813384 9.263197197 9.112301066 9.419814284 9.04328706 224819291 pcc Carbon cycling Carbon fixation Natrialba magadii ATCC 43099 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natrialba;species:Natrialba magadii; 6.982227975 7.112804461 6.711239424 7.225267332 227950923 phoA Stress Phosphate limitation Meiothermus silvanus DSM 9946 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 8.35887553 8.139633523 7.976246321 8.40181507 8.156428991 8.292537762 8.049944274 8.009689877 197119974 pstS Stress Phosphate limitation Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 8.556953749 8.434486698 8.612205333 7.966761851 7.782901562 7.790669004 7.533749609 7.499949696 8.077430067 7.685943292 7.654714491 7.636201239 72117504 mer Metal Resistance Mercury Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.300827575 8.514485004 8.600471605 8.708356894 8.171023366 8.149220906 8.323594809 8.454865435 8.732088055 8.502767207 153804427 CorC Metal Resistance Cobalt Campylobacter hominis ATCC BAA-381 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter hominis; 9.082135545 8.9342095 9.099951769 8.521025912 8.683165494 8.310949609 8.477950651 8.735193923 8.828934382 8.949684486 8.866298071 9.076511259 168197704 gyrB other category gyrB Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 9.070153538 9.001877101 9.350296669 8.840533091 8.793731736 8.539851442 8.857532173 9.370679459 9.047861955 9.133086549 9.008804953 8.871135025 33596686 ppx Phosphorus Phosphorus utilization Bordetella parapertussis 12822 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella parapertussis; 8.575417741 8.297963332 8.936036424 8.602589509 8.667605057 8.606894876 9.016603086 8.734446263 8.738115554 8.675569826 8.698480432 8.214201578 262335331 AceA Carbon cycling Carbon degradation others Rhodothermus marinus DSM 4252 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 8.687224341 8.752985909 8.225847998 8.363758815 8.278610348 9.049799002 8.581110926 9.00492036 8.205773933 8.212295841 8.212118607 146402959 polysaccharide_biosynthesis_protein_EPS Bioleaching EPS Acidiphilium cryptum JF-5 8.736874276 8.839333651 8.845375835 8.167821719 8.034409905 8.120650486 8.008517602 7.894657504 7.976422969 7.841328712 8.05929928 89345149 mer Metal Resistance Mercury Rhodoferax ferrireducens DSM 15236 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 8.648364963 8.461929585 8.396355348 8.549132982 8.589854602 8.562759715 8.653294696 8.374749339 8.62899858 8.386536977 8.636288517 8.276357486 146343107 SilA Metal Resistance Silver Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.930498088 8.587497475 8.920918388 8.537076163 8.442729391 8.242489571 8.390667342 8.774975481 8.774265209 8.460191787 8.451778882 8.68238358 196212902 nplT Carbon cycling Carbon degradation Starch Geobacillus sp. G11MC16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.477468135 8.612469208 8.427840088 8.130297303 8.446296487 8.6790606 9.249049527 8.657811974 8.98964431 8.697982069 8.660880238 8.764038922 2707272 mnp Carbon cycling Carbon degradation Lignin Ceriporiopsis subvermispora 8.177101587 8.057940053 8.16367301 8.162517228 7.703807967 7.755395046 7.661019515 8.364701795 8.101136962 8.271236866 8.174814688 177840761 CopA Metal Resistance Copper Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 8.581899618 8.275511843 8.352852751 8.269367137 8.164600406 8.027385073 7.897535853 8.23159667 8.496315376 8.166064567 7.981851571 8.045368447 54778533 adpB Organic Remediation Pesticides related compound Flavobacterium sp. MTCC 2495 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium; 8.467145709 7.939026167 7.6314634 8.031974988 7.734378357 7.636310832 7.748776422 7.81060169 8.048874946 7.645911919 124515312 ADP_heptose_synthase_EPS Bioleaching EPS Leptospirillum sp. Group II UBA 8.758189437 8.731874206 8.81932472 8.153628812 8.116914869 8.223756618 7.615876727 7.689569145 8.012539376 7.997169036 8.145092453 226327281 phoA Stress Phosphate limitation Proteus penneri ATCC 35198 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus penneri; 8.690037996 8.720465343 8.868643189 8.176774464 7.87587989 8.205485271 7.801641416 7.484502131 7.906259624 7.692963735 8.229198062 126348276 nagI Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces ambofaciens ATCC 23877 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ambofaciens; 8.262437903 8.721892408 8.618479524 8.534982297 8.489110337 8.330482421 8.277628139 8.638355622 8.297494777 8.32893535 8.232709049 8.011768159 170525 pheA Organic Remediation Aromatics Other aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Tremellomycetes;order:Tremellales;genus:Trichosporon; 9.479130392 9.445867261 9.926139047 9.44599811 9.474782375 9.27675712 9.709877003 9.941344809 9.851415578 9.86699146 9.767523569 9.990632391 212529518 nagG Organic Remediation Aromatics Aromatic carboxylic acid Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.863410767 7.672808799 7.444188082 7.908132536 7.843109979 7.750057326 7.549681286 7.498155412 146343236 linB Organic Remediation Pesticides related compound Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.356478343 8.076598804 8.364020073 8.491598874 8.435080078 8.325679714 7.984172438 8.557654056 8.246038918 8.352959358 8.297965846 8.694158401 157368764 phn Organic Remediation Herbicides related compound Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 8.051985537 8.213529552 7.141809092 7.486936868 7.067024476 7.669447451 7.135453048 6.895714507 7.519294757 37523402 todF Organic Remediation Others Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 9.708763354 9.716148151 9.728429397 9.032835986 9.120305975 9.140319341 8.958804375 8.58208376 9.114506162 8.913561625 8.938998978 9.346965421 184197269 narH Stress Oxygen limitation Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.490016278 8.23725072 8.486334008 8.065960016 7.79973165 7.646548891 7.817350411 8.127417487 8.111263757 8.212469947 8.131818582 8.295423827 282950657 sigma_70 Stress Sigma factors Citrobacter rodentium ICC168 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 8.794477895 8.610273877 7.960934416 7.987752403 7.907110916 8.627790521 8.116362623 7.969190518 7.794910316 8.114066758 206566475 MATE_antibiotic Antibiotic resistance transporter Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 8.253854852 7.871008153 7.805524575 7.544171135 7.624060088 7.669689711 7.76659199 7.936276029 7.653620444 7.588104781 7.749092452 218214375 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Clostridium hylemonae DSM 15053 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 8.684476268 8.910947374 8.772016325 8.784773867 8.57504618 8.897652781 8.860382422 9.088365714 8.707792178 8.749808265 8.712588966 224608196 pstB Stress Phosphate limitation Natrialba magadii ATCC 43099 8.746569136 9.008380898 8.941987843 8.844092592 9.272634221 9.37645912 9.710490569 9.220319618 9.642293049 8.864507625 8.993419957 9.033994332 50952845 lip Carbon cycling Carbon degradation Lignin Trametes versicolor 9.64389995 9.413126516 9.551461117 9.25808031 9.313259633 9.648102569 9.522455866 9.373908889 9.570299058 514392 contractile_tail_sheath_protein Bacteria phage STRUCTURAL Phage PS17 order:Caudovirales;family:Myoviridae; 8.411838753 8.057137587 7.544134655 7.467645115 7.692204771 7.862218283 7.506106864 7.37230573 7.720695495 7.39130505 109452546 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.153801492 8.241131785 8.317172741 8.50426844 8.936070246 8.768269714 8.732791874 8.850951321 8.891384232 8.894319992 8.689325908 8.403040496 87199256 pmdAB Organic Remediation Aromatics Others Novosphingobium aromaticivorans DSM 12444 8.289262376 8.43340821 7.82089868 8.14839619 8.185208156 8.485484762 7.243222137 8.67807305 7.792794285 7.776602915 7.966357009 52347680 SMR_antibiotics Antibiotic resistance transporter Bacillus licheniformis DSM 13 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 8.257700258 8.622966878 8.33177997 8.42282437 8.47583959 8.652875307 8.896693189 8.314641171 8.965809273 8.769738203 8.711306893 75909823 ureC Nitrogen Ammonification Anabaena variabilis ATCC 29413 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena variabilis; 9.013417782 8.945072723 9.20604751 8.654332233 8.478342732 8.401241038 8.346291578 8.277507245 8.358024058 8.463961078 8.582946339 8.573238346 148572656 exaA Organic Remediation Chlorinated solvents Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 8.600864532 8.211782678 7.52355972 7.48208925 7.508539115 7.191714844 7.01231694 7.301329949 7.304193558 7.452520835 114317122 sigma_38 Stress Sigma factors Granulibacter bethesdensis CGDNIH1 8.017775835 8.207979054 8.345915772 8.387856694 8.454637547 8.473158385 8.702638883 8.409331941 8.415855191 148628320 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 8.492815421 8.762058184 8.903630763 8.053080022 7.867736779 8.022810127 7.591658709 7.76133829 8.144237613 7.924489358 7.889552994 8.246724387 119391665 narG Nitrogen Denitrification Mycobacterium sp. D9-7 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.810186301 9.018471441 8.653305955 8.253580615 8.863813762 8.975358514 9.43784974 9.015574396 8.967965803 8.643692851 9.229154421 9.01129781 262083377 sigma_24 Stress Sigma factors Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Haliangiaceae;genus:Haliangium;species:Haliangium ochraceum; 8.604886726 8.615480682 8.381821329 7.638095478 7.646364332 7.950466768 7.538117517 7.317538832 8.280547097 7.637239578 7.71204631 7.620967065 71383943 nasA Nitrogen Assimilatory N reduction uncultured bacterium superkingdom:Bacteria; 8.213153254 8.13241639 7.623061691 7.458280639 7.454628121 7.133036335 6.99933401 7.60184469 7.386977357 7.284571432 7.754837184 167659920 ChrA Metal Resistance Chromium Alistipes putredinis DSM 17216 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes;species:Alistipes putredinis; 8.506032286 8.398896852 8.198019995 8.265246298 8.156601671 8.162214851 7.727838508 8.221749413 8.004145621 8.132518499 8.037978173 8.40046764 120405367 bphD Organic Remediation Aromatics Polycyclic aromatics Mycobacterium vanbaalenii PYR-1 9.509812867 9.425315428 9.478829819 8.901518912 8.832928148 8.889117146 8.663799079 8.619893091 8.841248693 8.723500853 8.774144343 9.046020464 56678387 nbaC Organic Remediation Aromatics Nitoaromatics Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 8.681914802 8.733660618 8.467005552 9.137335794 9.200966974 8.921920237 8.645035453 9.280328558 8.701887509 8.840508676 8.796714974 9.062624502 229208557 fnr Stress Oxygen stress Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 8.848552255 8.591451015 8.42056123 8.68146906 8.615833979 8.301309427 8.595205976 8.465635132 8.475918232 8.490401254 8.346875689 8.429979204 56678520 ChrA Metal Resistance Chromium Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 9.83666972 10.02328153 10.14501689 8.554961467 8.883813392 9.113155264 8.857276407 8.808028296 8.804279164 8.99095572 9.075776857 9.074334187 89051941 MFS_antibiotic Antibiotic resistance transporter Photobacterium sp. SKA34 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium; 8.191300203 8.070819074 8.116187958 8.055104604 7.931993614 8.428751074 8.133290347 8.236112984 8.12761593 7.518686334 7.632414932 112463241 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.909321829 7.640858161 7.309059876 7.715324207 7.844707685 8.240211448 7.702009319 7.626978047 7.735158858 114542306 bclA Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 9.214580131 9.552715761 9.00600694 8.992915666 9.26541054 9.731951492 9.863004392 9.506480435 9.280046955 9.091022015 9.429407249 9.364583848 256829313 sigma_24 Stress Sigma factors Desulfomicrobium baculatum DSM 4028 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfomicrobiaceae;genus:Desulfomicrobium;species:Desulfomicrobium baculatum; 8.354166885 8.506554063 8.270939284 8.187619529 8.313553723 8.442957412 8.45027383 8.818662686 8.463237336 8.597497821 8.786972242 8.827257376 89518329 amyA Carbon cycling Carbon degradation Starch Flavobacteria bacterium BBFL7 8.736582652 8.587837911 8.081406236 7.915505522 8.242699084 7.878705149 7.899415624 8.210580786 8.178733653 8.392880077 90420342 ureC Nitrogen Ammonification Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 9.05200639 9.220256562 9.097408279 8.400118531 8.32867516 8.514164615 8.649482199 8.512571621 8.274959064 8.755141672 8.789558923 8.56320074 84778387 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.357386564 8.17342267 7.574574725 7.563301189 7.710949196 7.351946558 7.64231636 7.695269724 7.731777001 148544820 cda Carbon cycling Carbon degradation Starch Lactobacillus reuteri F275 8.703595486 8.562603071 8.6327794 8.503092334 8.559422377 8.55462036 7.971778626 8.570268731 8.418601535 8.43708678 8.366062277 8.349124414 88932877 Ni_Fe_hydrogenase Energy process Energy process Dehalococcoides sp. BAV1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 8.140058347 7.932160803 8.604660229 7.840578693 7.74368146 7.472298223 7.566456429 7.45798575 7.889843352 7.680126588 7.574919912 7.735714223 118667089 nagG Organic Remediation Aromatics Aromatic carboxylic acid Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 9.5447266 9.423729701 9.672323902 8.89788358 8.836497283 8.781993331 9.077989886 8.778298045 9.078295325 8.768147771 8.765986899 9.057754333 218507318 sigma_24 Stress Sigma factors Rhizobium etli Brasil 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 9.29984283 9.083330277 8.924756428 8.561680993 8.494254502 8.78242341 109660121 ureC Nitrogen Ammonification unidentified bacterial contaminant superkingdom:Bacteria; 8.667236183 8.819044064 8.671625751 8.277918385 8.20719143 8.410638527 8.700476492 8.402410529 8.761462759 8.315549633 8.314238349 8.541028616 163859311 narH Stress Oxygen limitation Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 8.468680139 8.383747385 8.386955795 8.376720161 8.724896552 8.302144734 7.86917929 8.650012068 8.195536341 8.409748896 8.393030941 8.637430476 148724095 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured soil bacterium superkingdom:Bacteria; 8.437620011 8.146732669 8.419606699 8.050088577 7.853707672 7.871608861 7.690274187 7.46684907 8.343114727 7.675310464 7.558374135 7.78764346 184200250 Catechol Organic Remediation Aromatics Other aromatics Kocuria rhizophila DC2201 8.879159822 8.902852512 9.012296691 8.481933526 8.302208469 8.31162056 8.272800164 8.44364794 8.273423042 8.702556197 88703473 pstC Stress Phosphate limitation Congregibacter litoralis KT71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 8.869553306 8.836264157 8.970066539 8.539817753 8.487655037 8.263766154 8.301303752 8.197940498 8.413906925 8.327527761 8.013062552 8.422194499 134079989 phytase Phosphorus Phosphorus utilization Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 8.766143115 8.812920025 9.269628075 8.559863394 8.605158947 8.267695058 8.780453411 8.992397163 8.947936495 8.636218386 8.717015299 14495302 dhph Organic Remediation Aromatics Heterocyclic aromatics Arthrobacter nicotinovorans superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 9.196880083 9.090313905 8.99103479 9.016509418 8.978869651 8.979287249 8.922393878 9.414970447 8.926792737 9.2147872 9.037271259 9.202131611 29833084 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 9.363469402 9.375330217 9.30532158 8.83451309 9.211187744 9.488162809 9.524050562 9.348823153 9.740503587 9.170450539 9.499606804 9.252648128 256421611 endochitinase Carbon cycling Carbon degradation Chitin Chitinophaga pinensis DSM 2588 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 8.323181426 8.03038021 7.564597273 8.173088073 7.750455616 8.053336881 8.019833032 7.742681732 183976708 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.604322414 8.623015523 9.065882357 8.438014703 8.741426106 8.64582025 8.700187746 8.958088335 8.681792953 8.864504264 8.731269304 8.726415371 238793169 amyA Carbon cycling Carbon degradation Starch Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 8.516026228 8.568324299 7.462155204 7.664094195 7.904977839 7.902517659 7.318665529 7.760524862 7.540486799 8.070654779 148499213 pstB Stress Phosphate limitation Sphingomonas wittichii RW1 9.944940638 9.926558594 9.814669362 9.201193313 8.894409833 9.149881307 9.300382536 9.134965679 9.095346014 9.211987516 9.426021338 9.390718995 91714605 AceB Carbon cycling Carbon degradation others Shewanella denitrificans OS217 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella denitrificans; 8.762467702 8.949857845 9.032815504 8.463782029 8.319490857 8.346710203 8.395519601 8.234407426 8.159994978 8.312307004 8.321319974 8.511507963 15157719 pcpE Organic Remediation Herbicides related compound Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 9.670416582 9.802694671 9.805824355 9.25803645 8.93291293 8.853423641 9.165559256 8.908081424 9.158915353 8.911401518 9.094851666 9.22824323 22651592 napA Nitrogen Dissimilatory N reduction Sulfurospirillum barnesii superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Sulfurospirillum; 8.728900646 8.997928512 9.082617018 8.584988965 8.318475791 8.512054182 8.177836407 7.8687762 8.2230143 8.443922734 8.384349017 8.546197373 70982686 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 7.870371032 7.456072768 7.277867402 7.445176546 7.263039086 256806545 Tet Antibiotic resistance other Streptomyces viridochromogenes DSM 40736 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 9.998497193 10.18303747 10.36705601 10.32767885 10.43389608 10.27093651 10.38624665 10.5075345 10.17016642 10.78860726 10.57506214 10.34411126 76667520 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.143272852 7.929193045 8.142510308 7.483135746 7.382983925 7.490433776 7.282716914 7.146211999 7.771149969 7.407062172 7.379704036 7.498491432 262076956 sigma_24 Stress Sigma factors Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Haliangiaceae;genus:Haliangium;species:Haliangium ochraceum; 8.947467675 8.250517735 8.703756496 8.419123302 8.321309967 8.519530366 8.3954181 8.401479168 8.27052048 8.467783715 8.253409567 258602131 glnA Stress Nitrogen limitation Corynebacterium jeikeium ATCC 43734 8.242935622 8.348408004 8.474179153 8.132612894 7.996423887 8.08896791 7.830148841 7.935549989 8.194153261 8.35602403 8.169847629 7.960338972 146402310 fnr Stress Oxygen stress Acidiphilium cryptum JF-5 8.701496407 8.051007068 7.665208776 7.819425214 7.74314326 7.478703667 7.46661841 154292538 nagG Organic Remediation Aromatics Aromatic carboxylic acid Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 8.102869282 8.108947421 8.265871633 8.208951527 7.79346267 7.612712937 7.561829627 8.018557626 8.071700428 7.629868178 7.619187435 193084245 CadA Metal Resistance Cadmium uncultured marine group III euryarchaeote KM3-28-E8 superkingdom:Archaea;phylum:Euryarchaeota; 8.390317324 8.322333073 8.2490793 8.018035868 7.850192933 7.474884077 7.575593529 7.771654992 8.057412797 7.927403182 7.965500253 7.892914739 157011638 APS_AprA Sulphur adenylylsulfate reductase uncultured bacterium 8.31682446 8.355199992 8.331359467 7.594258434 8.142554381 8.249755776 8.299403523 7.472254411 8.349661909 7.916022618 7.883790286 7.880025765 114778865 ArsC Metal Resistance Arsenic Mariprofundus ferrooxydans PV-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Zetaproteobacteria;order:Mariprofundales;family:Mariprofundaceae;genus:Mariprofundus;species:Mariprofundus ferrooxydans; 8.154051252 8.203051498 8.159110354 8.511148985 8.400971901 8.322901327 8.687698192 8.505727245 8.535915673 8.723658845 8.524468066 8.308294773 56475860 dehH109 Organic Remediation Chlorinated solvents Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 8.369165204 8.376245195 8.147539316 8.010746716 7.830009007 7.880205445 7.36635132 7.958843899 7.80666695 7.880981571 7.68469457 118664168 CadA Metal Resistance Cadmium Clostridium cellulolyticum H10 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium cellulolyticum; 8.719760955 8.565993512 8.72040103 8.054968408 7.998765633 7.888627634 7.750841789 7.819244945 8.123004541 7.897291005 7.364901886 8.093153371 229215253 ahpC Stress Oxygen stress Dethiosulfovibrio peptidovorans DSM 11002 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Dethiosulfovibrio;species:Dethiosulfovibrio peptidovorans; 8.621961017 8.226438379 8.280088799 7.713690938 7.791372877 8.339471763 8.441037131 8.077162529 8.1679041 8.303045549 8.563949268 8.518581739 182437288 TerC Metal Resistance Tellurium Streptomyces griseus subsp. griseus NBRC 13350 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 8.358775159 7.938604507 8.35877584 7.706166234 7.579716065 7.329488309 7.391840584 7.000077302 7.261080465 7.079161791 7.630424752 47779042 helicase_P4alpha_type Bacteria phage REPLICATION Burkholderia cepacia complex phage BcepC6B order:Caudovirales;family:Podoviridae;genus:Bpp-1-like viruses; 8.679195719 8.694186198 8.813692364 8.865398422 8.544851478 8.179591315 8.507279109 8.604672016 9.120633119 8.220928796 8.158473409 8.364391972 157317468 narI Stress Oxygen limitation Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 11.55081073 11.29447921 11.58442701 11.1584962 11.06321084 10.89726521 10.89010955 10.71125042 11.21665927 11.06673962 11.09570809 11.05524269 148260567 cytochrome_c Bioleaching Electron transport Acidiphilium cryptum JF-5 9.2339098 9.240029293 8.315317038 9.065370343 9.519250322 9.858753865 9.526614949 9.905066238 9.560713741 9.633922983 9.772071526 9.641362575 258531633 sigma_70 Stress Sigma factors Pantoea sp. At-9b 8.871627158 8.241314335 8.560202383 8.448852549 8.538510473 8.55775059 8.73945203 8.90984707 8.808693248 8.998363101 9.008080542 167349367 fnr Stress Oxygen stress Caulobacter sp. K31 8.257106464 8.56355177 8.24118519 8.490430647 8.454142151 8.373798646 8.544987327 8.418174561 8.610286507 8.3324328 8.521361573 8.315243304 218438751 Tet Antibiotic resistance other Cyanothece sp. PCC 7424 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 9.25057378 9.234412191 9.435013892 8.549826011 8.533763917 8.467731047 8.389586533 8.299968293 8.277550295 8.435603841 8.430561022 8.750626722 83859323 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Oceanicaulis alexandrii HTCC2633 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis;species:Oceanicaulis alexandrii; 9.078642456 8.878477984 8.428669602 8.361085121 7.973365492 8.281313954 8.533821539 8.333878809 8.479860172 8.378863572 8.422723765 8.424568202 2738813 dnaK Stress Heat shock Mannheimia haemolytica 8.676327807 8.542311895 8.272057234 8.709901244 8.932505971 8.816676009 8.609841372 9.416367331 8.754567837 9.26654168 9.184405211 9.029073145 258650533 ureC Nitrogen Ammonification Nakamurella multipartita DSM 44233 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 9.21875797 9.090115798 8.993609805 8.825283867 9.015874851 8.747792579 8.986918867 9.225053249 8.930717208 9.203593912 9.129611988 9.158469638 145296365 Catechol Organic Remediation Aromatics Other aromatics Corynebacterium glutamicum R superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 8.345242563 8.1449598 7.947784388 7.858887598 8.007790983 7.728840234 7.868013652 7.940849254 8.031222644 8.20225102 8.14870341 121608071 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 8.909071723 9.213597992 8.826295105 8.980941914 9.447482069 9.14275236 9.495434862 9.249072717 9.270437545 9.35518416 9.40411405 9.291781249 118677392 nitro Organic Remediation Others Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 8.99017227 9.169712183 8.970585642 8.515286452 8.54988856 8.87129047 9.427290099 8.835358826 9.516513511 8.52163401 8.579544151 8.672480803 227549512 amyA Carbon cycling Carbon degradation Starch Corynebacterium lipophiloflavum DSM 44291 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium lipophiloflavum; 8.219234305 8.093616262 8.390426602 8.148296002 7.816191353 7.5908414 7.5346136 7.503126427 8.21515316 7.827665488 7.677521772 7.924114038 229029467 srt virulence surface protein Bacillus cereus AH1271 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 7.010428526 7.020107077 167350030 ChrA Metal Resistance Chromium Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 9.855446833 9.516402634 9.312724761 9.394560007 9.413388703 9.301235545 9.122190502 9.407596999 9.227901972 9.343131019 9.431501805 9.193151573 78195518 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 8.423456284 8.544168264 8.7864636 8.934303702 9.021442092 8.638805323 8.914375352 9.585363443 8.939576479 9.288700369 8.941766712 9.351789469 111019375 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. RHA1 8.326664226 8.49373638 8.377599855 8.316560446 8.515457061 8.394421664 8.800472766 8.496101544 8.370188795 8.402353791 8.716676736 8.467428706 62149162 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.560218712 8.533928574 8.599165232 8.707469508 8.453678011 8.12947038 8.512202178 8.428951788 8.492750658 8.339894885 8.243785768 8.243957538 113529412 tftH Organic Remediation Aromatics Chlorinated aromatics Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.446514525 8.2764537 8.149151705 7.957850503 7.638513633 8.437209649 8.182728238 8.125462352 8.26435367 8.161650677 7.793462133 117607080 gyrB other category gyrB Magnetococcus sp. MC-1 9.712225173 9.243791525 9.149592712 9.27968498 9.406235471 9.362856289 9.436040597 9.216484853 9.504974624 9.346879328 121583390 TerD Metal Resistance Tellurium Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8.835101373 8.346334151 8.983688895 8.401154624 8.241624336 8.008743612 7.743993457 7.549231262 7.939343942 7.914822877 8.207426887 66391506 T4_recomb_endonuclease Bacteria phage REPLICATION Enterobacteria phage RB43 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 8.303363253 8.237670787 8.251589292 7.571509499 7.572041257 7.907006337 7.921043736 7.502992968 8.229409979 7.724440026 7.383140635 7.748708275 118167832 mhpC Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium avium 104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 9.488461435 9.688533191 9.474770957 9.194580295 9.782138613 9.671425398 9.671132529 9.596521565 9.666680906 9.899047542 9.729627887 221064883 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.67211699 8.612530634 8.691405609 8.056536782 8.044661323 7.997290281 8.138718003 7.637967632 8.254634301 7.897308729 7.709873521 8.136834861 91696106 nagI Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 9.134737671 9.40298745 9.135413536 9.51453386 9.499191956 9.432385714 9.601909923 9.745221965 9.410670466 9.834749758 9.860132912 9.594832602 81343992 endolysin_transglycosylase Bacteria phage LYSIS Enterobacteria phage RTP order:Caudovirales;family:Siphoviridae;genus:T1-like viruses; 8.135292376 8.207532243 7.630015266 7.8635604 7.959544209 8.132626307 7.070281289 8.428766294 7.650756802 7.806323293 8.085629207 241661730 iro virulence Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.115467143 8.163482767 7.597149556 7.226612077 7.70350139 8.546817817 8.059034407 8.058887864 8.222025555 8.07968492 217409481 SMR_antibiotics Antibiotic resistance transporter Phaeodactylum tricornutum CCAP 1055/1 superkingdom:Eukaryota;phylum:Bacillariophyta;class:Bacillariophyceae;order:Naviculales;family:Phaeodactylaceae;genus:Phaeodactylum;species:Phaeodactylum tricornutum; 8.24989484 8.040886644 8.138590946 8.333258796 7.559186843 8.135575306 7.669626487 7.803501268 7.889912329 7.874112347 8.06317848 7.810583955 187716423 silC Metal Resistance Silver Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8.601358216 8.550266068 8.544472595 7.991520028 7.954172534 7.905798044 7.897404952 7.939072795 8.131003881 7.974309173 7.947513068 8.142466989 91782304 phtA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.300366753 8.662254089 8.589028631 8.279165419 8.349938804 8.453212337 8.748513187 8.458651729 8.427792782 8.244943098 8.725787695 8.514334746 67525869 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 9.509928445 9.418887415 9.798253133 9.05621829 8.925462646 8.947147001 8.860269592 8.715424986 8.868900162 8.985974374 9.003835567 9.101393595 153798630 obgE Stress Radiation stress Actinomyces odontolyticus ATCC 17982 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces odontolyticus; 8.414510882 8.414112415 8.277230045 8.282692421 8.42188706 8.094831628 8.061049084 8.40529493 8.558261424 8.560455184 8.317156391 8.488135628 91720906 ppx Phosphorus Phosphorus utilization Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 9.053856991 8.91588459 8.978600272 8.52894078 8.361969724 8.270441078 8.143456121 8.234259693 8.305070934 8.176588002 8.153699702 8.382455022 19909693 gyrB other category gyrB Ochrobactrum anthropi superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum; 8.550055507 8.547077555 7.703089504 7.721944788 7.542825384 8.187592466 7.686663208 8.487315963 7.904181159 7.639666859 7.962227859 238927772 narH Stress Oxygen limitation Selenomonas flueggei ATCC 43531 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas flueggei; 8.244720573 8.150581088 8.170824928 8.29482163 8.126434097 8.329353978 8.467061264 8.544791349 8.621967795 8.516596828 8.443256578 158434732 tutFDG Organic Remediation Aromatics BTEX and related aromatics Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 8.362781988 8.488695037 8.855296283 8.023435792 8.016194409 7.999146793 7.91236774 8.230290425 8.263389759 8.20959963 8.410971155 260454552 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 9.224137888 8.911225341 8.657845815 8.909250733 8.993877321 8.501357115 8.925010052 8.80942554 8.80520914 8.564861111 8.714720716 8.637188404 221087860 akbF Organic Remediation Aromatics BTEX and related aromatics Geobacillus sp. Y412MC61 8.966912501 8.916215579 9.160485561 8.747526919 8.417802949 8.452252966 8.316946493 8.580008335 8.300565823 8.508162523 8.563912347 91689980 nmoA Organic Remediation Aromatics Nitoaromatics Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 9.089219002 8.867314705 9.286472763 8.784462345 8.706967347 8.285149755 8.298149675 8.642936618 8.58292936 8.510965449 8.790360057 115371933 ppk Phosphorus Phosphorus utilization Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 10.57479683 10.31740579 10.33690318 9.394886133 9.593071786 9.350910577 9.731809846 9.28354611 9.808006503 9.564913006 9.86367696 9.670520929 206684870 ppx Phosphorus Phosphorus utilization Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 9.402660884 9.738996974 9.510160276 8.954466179 8.770493618 8.568610556 119525860 catB Organic Remediation Aromatics BTEX and related aromatics Thermofilum pendens Hrk 5 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermofilaceae;genus:Thermofilum;species:Thermofilum pendens; 7.848219938 7.810089973 7.484181432 7.547142038 7.741978761 7.721107083 7.535498397 7.691829609 166408356 nahA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 8.322039578 8.43937 7.68030677 8.580548312 8.328449696 8.460302027 8.085935951 8.049049655 7.938158466 8.003611505 264679340 ppk Phosphorus Phosphorus utilization Comamonas testosteroni CNB-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.076689585 7.794425217 7.633821558 7.891516634 7.647688892 7.815386693 7.559505459 7.873854829 56420147 linC Organic Remediation Pesticides related compound Geobacillus kaustophilus HTA426 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus kaustophilus; 8.390138076 8.282282324 7.859765521 7.583440701 7.626516707 7.379893223 7.704671905 7.92849349 7.41358018 7.42313868 7.841075176 149916441 CopA Metal Resistance Copper Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.493183462 8.408365882 7.9620738 8.168862482 8.232204542 8.425965053 8.458857519 8.428205983 8.416648722 8.615867873 8.67204324 8.533743674 218549081 narI Stress Oxygen limitation Escherichia fergusonii ATCC 35469 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia fergusonii; 9.161270506 9.014883745 9.149955629 8.45360103 8.137796373 8.194340958 8.466980788 8.116177089 8.47193959 8.382970649 8.235222798 8.401193334 77385741 MATE_antibiotic Antibiotic resistance transporter Pseudomonas fluorescens Pf0-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.546872077 8.765798538 8.71232325 7.970994817 8.378765971 7.998978277 8.542614816 8.025583548 8.559594377 8.606028662 8.443536855 8.592142038 114190155 pectinase Carbon cycling Carbon degradation Pectin Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 8.431660396 8.382194234 8.196999756 8.297720187 7.705367844 7.894237855 8.244625325 7.985624756 7.630186988 8.03084738 126315942 atzC Organic Remediation Herbicides related compound Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.221730659 8.589529624 8.688740766 8.860006291 8.872620444 8.701826811 8.673975042 8.863378627 8.636958288 8.682111634 8.338441893 8.312639316 153888844 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.322164366 8.745528576 8.801779354 8.152791747 8.14170658 8.568702158 8.784439702 8.747873303 8.79515864 8.424484283 8.540333714 8.419538644 1944015 gyrB other category gyrB Comamonas terrigena superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 8.240658257 8.276199884 8.401555839 8.611493346 8.325419679 8.143180497 8.737203111 8.562779631 8.612518015 8.226535282 18369667 bclA Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus evansii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 9.052471106 8.847282161 8.861781607 8.956977486 8.844664277 8.867830059 8.512617767 8.952989776 8.502894103 8.786567336 8.774423976 8.778205889 148628318 nahA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 8.279246001 8.152888868 8.168818752 8.257429195 8.221868972 7.840219036 8.580378024 8.376502417 8.278690215 8.145481711 8.217304131 158523516 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 9.182167781 9.05861615 9.11842107 8.864982029 9.012115112 8.802125343 8.977482186 9.296431478 8.868055169 9.046196492 8.988617797 9.159607988 167589143 fnr Stress Oxygen stress Burkholderia ubonensis Bu 8.83885753 9.063264526 9.383719949 8.97663692 9.028847226 8.75990794 8.914083924 8.983862346 8.81723524 9.14831899 9.249883141 9.044190485 225793774 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Acidobacterium capsulatum ATCC 51196 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteria;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 8.598363341 8.550906472 8.235461268 8.500171677 8.146783618 7.902779096 8.205327159 8.256054394 8.375317039 8.395573866 8.267147765 7.714867216 223887072 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 9.270134179 9.205256118 9.274603045 8.535961867 8.493827042 8.438602361 8.22219259 8.200982393 8.321776279 8.280005105 8.1799254 8.735183266 170776907 CopA Metal Resistance Copper Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 8.507037788 8.654898366 9.018287134 9.10105082 8.911192121 8.784901376 9.427007673 8.832455506 9.296274064 9.123116069 9.104419388 77378473 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.52864135 8.753098008 8.767087428 8.508859125 8.370689815 8.44773465 8.480487068 8.434975379 8.562338204 8.399894414 8.510983363 8.678069923 169818633 iro virulence Burkholderia cenocepacia MC0-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 9.29508106 9.486701896 9.238717951 8.698064005 9.031999659 9.008899155 9.100912354 9.0539114 9.059559638 9.390576283 9.505398003 9.250981306 196202910 pstC Stress Phosphate limitation Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.826109863 8.63440771 8.593685752 7.977664835 7.694166843 7.914686739 7.484589626 7.55462857 7.962429895 7.872987522 7.452082379 7.952072429 255279683 ara Carbon cycling Carbon degradation Hemicellulose Bryantella formatexigens DSM 14469 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;species:Bryantella formatexigens; 8.845532037 8.54341825 8.407547018 8.439760985 8.332159573 8.194220771 8.302002817 8.579806778 8.714027267 8.664244462 8.768219287 8.759532524 171852849 fnr Stress Oxygen stress Corynebacterium urealyticum DSM 7109 7.521281326 7.59226014 7.658518271 7.143107065 7.262079952 7.718174319 7.435797402 7.40236984 7.565548806 111225032 pcc Carbon cycling Carbon fixation Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 9.122485614 9.138435129 9.353197113 8.765617293 8.823432033 9.108805194 9.437402229 8.795225174 9.174917893 8.799388049 8.785584795 8.958507746 198266264 mer Metal Resistance Mercury Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 9.344605103 9.161941603 9.212941569 8.005424828 8.021355996 7.84729046 7.996652683 8.139301608 8.237042498 8.002205439 8.080735026 8.561107271 161385847 atzB Organic Remediation Herbicides related compound Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 8.480437733 8.748336974 8.000273342 8.586270519 8.810757542 8.822647502 9.009569753 8.793947417 8.897296422 9.004351118 146274160 atzA Organic Remediation Herbicides related compound Pelotomaculum thermopropionicum SI superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Pelotomaculum;species:Pelotomaculum thermopropionicum; 9.188784864 9.280249057 9.569877828 8.84276829 8.801517883 8.711289416 8.620695723 8.401916307 8.765567114 8.563917815 8.540931494 8.933356566 1518970 tnrA Stress Nitrogen limitation Bacillus subtilis subsp. subtilis str. 168 8.632823045 8.3995507 8.727565519 8.107396607 7.681487584 7.615859446 7.43314382 7.024566603 8.025947717 7.737745074 7.55412752 7.93535031 68263041 pstS Stress Phosphate limitation Corynebacterium jeikeium K411 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 8.984107183 8.942002444 8.951629405 8.972874355 9.073300099 9.085910672 8.558807442 9.358368278 8.691829663 9.000875421 8.851008984 9.076480779 15077478 dsrB Sulphur sulfite reductase Desulfofaba gelida superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfofaba; 9.278584298 9.477780312 9.584082399 9.294897294 9.566506208 9.484988398 9.604915029 9.954780788 9.405828809 9.838595888 9.858565959 9.14777522 145573282 type_III_secretion virulence secretion Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 8.785190352 8.694220168 8.701486985 8.067839204 7.897469007 7.97332439 8.071296488 8.172961396 7.903829187 7.88186408 8.210679185 18034317 dsrB Sulphur sulfite reductase Syntrophobacter wolinii superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter; 8.904552893 8.708818848 8.707042619 8.770828991 8.994050361 8.954521038 8.591961437 9.300795372 8.607840009 8.960598292 9.076759063 9.352124694 70993930 glucoamylase Carbon cycling Carbon degradation Starch Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 8.20698116 8.041658753 8.165627106 7.638210247 7.529883356 7.666334291 37548722 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.112619512 8.316265483 7.940172771 7.617226671 7.349971141 7.530450799 7.414834706 7.83280338 7.74838542 7.363358049 7.654422152 118616843 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 8.391795237 8.128761101 7.809999624 8.083680256 8.049075858 7.699589857 8.329983812 8.018367912 8.052851604 8.071750713 116251119 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.207444097 8.012596618 7.888000339 8.059715187 7.854964731 8.021419316 8.484613432 8.276491461 8.171385584 8.200325209 8.050464901 86356165 pstA Stress Phosphate limitation Rhizobium etli CFN 42 8.522573607 8.600539923 7.887399357 7.826586993 7.922696968 8.133246973 7.628829818 7.849338725 7.609917337 7.990246365 196259193 fnr Stress Oxygen stress Cyanothece sp. PCC 7822 10.83789828 10.86575464 10.88018492 10.54473064 10.62976301 10.25626638 10.92619646 10.80945889 11.00321687 10.61486537 10.4372456 10.68511685 157681157 SMR_antibiotics Antibiotic resistance transporter Bacillus pumilus SAFR-032 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pumilus; 8.153313098 8.138705141 7.544159779 7.509217247 7.615556254 7.273582126 7.475291538 7.951591224 7.728538268 7.726271478 7.538352628 84713420 ZntA Metal Resistance Zinc Polaromonas naphthalenivorans CJ2 8.632970748 8.545955577 8.299402859 8.025077614 8.036632891 8.458903702 8.2849956 8.131338941 8.595137602 8.090204074 8.042660211 8.126479062 240867018 phoB Stress Phosphate limitation Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.731962693 8.778292968 8.651280818 8.656839413 8.670855069 8.68950324 8.602214565 8.553313421 8.593626131 8.595871443 9.060262524 8.565671315 260892899 pstB Stress Phosphate limitation Ammonifex degensii KC4 8.059538108 8.101991988 8.049447276 8.00313185 7.809834052 7.42302676 7.804920057 7.896577831 7.570349854 7.604111529 7.640246225 260402674 clpC Stress Protein stress Dialister invisus DSM 15470 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Dialister;species:Dialister invisus; 8.536943212 8.258031887 8.401601136 8.230510916 8.1196479 7.916196176 7.844103482 8.11413884 8.210438575 8.26120978 7.920052233 8.080447824 2765429 vanA Carbon cycling Carbon degradation Others Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.787470612 8.892377471 8.651222752 8.443802258 8.777690551 9.038338125 8.573780491 8.762135199 8.416939618 8.657377695 8.368890165 254228690 ppk Phosphorus Phosphorus utilization Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.741976251 7.93072861 8.775099741 8.084171252 7.701683394 8.010407893 7.615558617 7.540296242 7.752590423 7.89000067 8.073293512 218667710 atzA Organic Remediation Herbicides related compound Acidithiobacillus ferrooxidans ATCC 23270 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 9.091195551 9.09792977 9.46137046 8.316781108 8.514285826 8.325409599 8.224724435 8.296178468 8.158855679 8.271559825 8.171034278 8.61177111 257796600 narI Stress Oxygen limitation Desulfohalobium retbaense DSM 5692 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium;species:Desulfohalobium retbaense; 9.452318563 9.572597799 9.509490746 8.913043025 8.846180894 8.690306527 9.275291256 8.919016501 9.384477752 8.804800313 8.95880098 8.82118954 121553267 pimF Organic Remediation Aromatics Aromatic carboxylic acid Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 9.756510737 9.952673418 9.868301815 9.030922027 9.297377305 9.181099297 9.529325407 9.076106346 9.781855602 8.98628746 8.994605168 9.038908166 225175155 obgE Stress Radiation stress Dethiobacter alkaliphilus AHT 1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Syntrophomonadaceae;genus:Dethiobacter;species:Dethiobacter alkaliphilus; 7.720038977 7.523763794 7.715147121 7.214253589 7.508007746 7.698203912 7.348990387 7.507205143 7.59353029 257387839 pstA Stress Phosphate limitation Halomicrobium mukohataei DSM 12286 8.696037842 8.870143343 8.959171315 8.194071305 8.126492571 8.181918092 7.80002208 7.833946039 8.123535117 8.372434322 8.230938843 8.295797015 84689530 sigma_24 Stress Sigma factors Parvularcula bermudensis HTCC2503 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 8.971053433 9.08552197 8.777073746 8.327305578 8.691831018 9.08645778 9.161780823 8.884092605 9.445839055 9.238882514 114798582 pimF Organic Remediation Aromatics Aromatic carboxylic acid Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 8.546803098 8.66193261 8.678452191 7.975992404 8.081360639 8.173784769 8.636321103 8.210188939 8.622246997 7.757060553 7.891037924 7.857495874 1771521 napA Nitrogen Dissimilatory N reduction Rhodobacter capsulatus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 8.248260313 8.306908089 8.301625513 8.409498853 8.26186926 8.187868668 8.535523991 8.443630526 8.512937333 8.301307325 7.909088958 240278137 endochitinase Carbon cycling Carbon degradation Chitin Ajellomyces capsulatus H143 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 8.997764505 9.298961506 8.757000377 8.358347805 8.551120586 8.809615309 8.803532119 8.609093162 9.097461896 8.406629219 8.504475383 8.531589537 94471185 narG Nitrogen Denitrification uncultured bacterium 8.682229511 8.764970909 8.551312586 8.41016834 8.298680659 8.728540704 8.822079112 8.449003758 8.835316085 8.376888676 8.53314986 8.574515451 183177766 ArsC Metal Resistance Arsenic Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 8.428395471 8.659808179 8.487668857 8.174347686 8.20516479 8.841282581 8.887650947 8.563631675 8.885727697 8.780421755 8.837807443 9.041325279 110680172 CODH Carbon cycling Carbon fixation Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 8.987146781 9.071197108 8.741023704 8.071031485 8.447010742 8.937318006 9.361563858 8.83772374 9.058890363 8.655731354 8.622710355 8.543274257 227991343 pstA Stress Phosphate limitation Meiothermus ruber DSM 1279 8.530076567 8.706920383 8.727846199 8.359711197 8.281286328 8.23269949 8.259284037 8.406770064 8.729560646 8.2059984 8.067869831 8.426937907 146342198 phn Organic Remediation Herbicides related compound Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.410820593 8.401190952 8.464912933 8.566046145 8.425671556 8.380621834 8.345715008 8.66631356 8.468240703 8.536377889 8.562427579 7.961767811 241870672 sigma_70 Stress Sigma factors Weissella paramesenteroides ATCC 33313 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Weissella;species:Weissella paramesenteroides; 8.65169721 8.715019463 8.670189729 8.304507882 8.399558675 7.891943733 7.57718071 7.607815044 7.85600311 7.687137113 8.059947024 113927269 cda Carbon cycling Carbon degradation Starch Bacillus halodurans superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 8.411277126 8.775207454 8.699866479 7.118820891 8.28882456 8.169677611 7.900979701 8.634550046 184193728 katE Stress Oxygen stress Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 9.691333168 9.5606699 8.710686241 9.328945142 9.291824343 9.125163746 9.24108242 9.233641487 9.188746368 9.337756215 9.392077788 9.192983504 15806175 AceB Carbon cycling Carbon degradation others Deinococcus radiodurans R1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 9.792165226 9.600961851 10.02226411 9.203912803 8.928110909 9.133805216 9.21321372 8.888739033 9.471560963 9.323833063 9.656079215 9.391086698 116699179 gyrB other category gyrB Syntrophobacter fumaroxidans MPOB 10.18586772 10.03353516 9.99768592 9.392963519 9.666415281 9.742112657 9.592242309 9.881252008 9.528575531 9.792805284 10.02033742 9.911979735 76057013 narG Nitrogen Denitrification uncultured bacterium 8.763986378 8.864177234 8.594709229 8.636494599 8.34955333 8.412963673 8.291496947 7.904228636 8.477996813 8.301048074 8.315221962 8.517779778 117983437 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.429869868 8.501590826 7.753810025 7.930042227 8.02695201 7.180640389 8.415346306 7.580244671 7.955661799 7.82158874 121698955 chnB Organic Remediation Other Hydrocarbons Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 9.092910734 9.075945947 9.259143779 8.513527527 8.390777922 8.357792002 8.173801252 8.332732634 8.373001488 8.302593361 8.74536256 83701122 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.958462019 9.233432212 8.277866076 8.493837144 8.907359618 9.108691168 8.762811429 8.689276871 8.484755907 8.84378087 8.955684208 50542690 rubisco Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.491402667 8.632175758 8.300530459 8.55685429 8.382479758 8.055173127 8.70574499 8.366127277 8.79985901 8.362036259 8.408374687 8.199501437 22536134 MFS_antibiotic Antibiotic resistance transporter Lechevalieria aerocolonigenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinosynnemataceae;genus:Lechevalieria; 9.794003603 9.515860185 9.300452247 9.171694247 9.308502823 9.003506045 9.34421226 8.669694067 9.421147327 9.117708667 9.20929204 9.278026147 229867326 obgE Stress Radiation stress Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 9.852177563 9.416198995 9.552733862 9.162854909 9.265583824 9.505297489 9.853348644 9.128077937 9.820641246 9.167335954 9.290764048 9.316710559 151368479 phenol_oxidase Carbon cycling Carbon degradation Lignin Hemimycena crispata superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Hemimycena; 11.29136945 11.17136151 11.34821858 10.55566022 10.11433196 9.840810635 10.84110938 10.55437971 10.85156267 10.63335099 10.8451015 10.75248817 260406875 AceB Carbon cycling Carbon degradation others Acinetobacter sp. RUH2624 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter genomosp. 13TU; 7.320041412 6.916928309 6.943045926 7.163487181 167463166 Al Metal Resistance Aluminum Paenibacillus larvae subsp. larvae BRL-230010 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus larvae; 8.870640684 9.160635877 9.203945071 8.735881303 8.69529924 8.663985568 8.628353092 9.202707735 8.76169143 9.032803151 9.175598146 12667197 cmuA Organic Remediation Chlorinated solvents Hyphomicrobium chloromethanicum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 8.588832296 8.616906591 8.554989203 8.164699678 8.154543122 8.154438479 7.827247249 8.060938462 8.345817334 8.071026844 7.905274915 8.004846311 112379415 pcaG Organic Remediation Aromatics Other aromatics Variovorax paradoxus superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax; 8.576750219 8.23876925 8.169181469 8.348221746 7.651181761 7.938654672 8.470992707 91204035 mer Metal Resistance Mercury Candidatus Kuenenia stuttgartiensis superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;genus:Candidatus Kuenenia; 9.037412521 8.818071835 8.870371541 7.991014308 7.998609273 7.843213472 8.007661165 8.101670928 8.580013235 8.330649706 8.248986058 8.166003648 261500194 amoA Nitrogen Nitrification superkingdom:Bacteria; 9.017026123 8.757682424 9.008715319 8.537938107 8.181344493 8.191604162 8.891796078 8.511121417 8.644574686 8.76430778 126319906 nitA Organic Remediation Aromatics Other aromatics Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.375416953 8.369477665 7.618811518 7.20223798 8.173959835 7.561763396 7.75566447 7.500069392 56312691 pimF Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 8.521544306 8.427600864 8.363500739 8.252976643 8.200190463 8.345467543 8.33562393 8.080119704 8.578730212 8.728037655 8.250405301 114550882 phdCI Organic Remediation Aromatics Polycyclic aromatics Mariprofundus ferrooxydans PV-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Zetaproteobacteria;order:Mariprofundales;family:Mariprofundaceae;genus:Mariprofundus;species:Mariprofundus ferrooxydans; 8.063278558 7.996484329 7.333889886 7.492929368 7.586752495 7.519720017 7.129635671 7.263554345 7.123289951 7.705094235 157011604 APS_AprA Sulphur adenylylsulfate reductase uncultured bacterium superkingdom:Bacteria; 8.332740378 8.309597167 7.892411901 7.802147859 7.966196412 7.442466754 7.59029944 7.996151081 7.348124013 7.567297044 7.578751725 226366128 narH Stress Oxygen limitation Rhodococcus opacus B4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 10.27438096 10.21212289 10.33222612 9.631138972 9.513118237 9.470322761 9.62402395 9.199449661 9.802011909 9.764410066 9.933561707 9.878338211 193225032 CopA Metal Resistance Copper Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 10.20622709 10.22776543 9.796340442 10.13018235 10.36369974 10.37666171 10.19734019 10.52668764 10.33950116 10.47327923 10.4415549 10.12964914 20502013 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.522801323 8.788307146 8.471989316 7.825194504 9.096519138 9.296365946 8.817063114 8.957707953 8.870227615 8.471659632 8.977888849 169833289 nplT Carbon cycling Carbon degradation Starch Streptococcus pneumoniae Hungary19A-6 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus pneumoniae; 8.08523381 8.07552746 84516149 pimF Organic Remediation Aromatics Aromatic carboxylic acid Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 8.479921555 8.141581619 8.429435423 7.650570651 7.942158319 8.114790039 7.738163463 8.182257545 7.657298327 7.96677441 7.736385891 11322415 mhpA Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 9.520585656 9.028720469 9.412149426 8.760298739 9.030639847 8.742128942 8.758864086 8.754391262 8.761217602 8.734904104 8.967940965 4753672 pstS Stress Phosphate limitation Burkholderia sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.251071544 7.112776049 7.053459312 7.431580657 169639044 hrcA Stress Heat shock Candidatus Desulforudis audaxviator MP104C superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Candidatus Desulforudis;species:Candidatus Desulforudis audaxviator; 9.548598818 9.401841613 9.419986355 9.116413301 9.153033812 8.887151987 8.849545455 9.291375359 8.986460869 9.117279863 9.275972788 8.907314456 123444366 pstA Stress Phosphate limitation Yersinia enterocolitica subsp. enterocolitica 8081 9.33999675 9.184055349 9.475944963 8.468531188 8.761786188 8.758544529 9.075493111 8.148992329 9.038006426 8.648857434 8.768577599 8.804818301 84714081 Apc Organic Remediation Aromatics BTEX and related aromatics Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8.927705341 8.937840757 8.797836837 8.609455781 8.631023297 8.818025072 8.286413924 8.44166967 8.805145156 8.370201052 8.584285252 8.48750053 109290313 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.682597497 8.046633588 8.509109637 8.531509608 8.20274961 8.590943591 8.184236547 8.044446935 7.839899763 118746881 ChrA Metal Resistance Chromium Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 8.31046608 8.290507102 8.478270083 7.894964955 7.7101865 7.724504984 7.690600348 7.6841349 8.08780453 7.758013004 7.984220513 7.869757001 187425642 CadA Metal Resistance Cadmium Akkermansia muciniphila ATCC BAA-835 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Akkermansia;species:Akkermansia muciniphila; 8.845691219 8.694814334 8.455788133 8.633307274 8.603249343 8.534092197 8.04664426 8.906097216 8.486203275 8.353807067 8.605512406 8.365098317 111147441 vanA Carbon cycling Carbon degradation Others Frankia alni ACN14a 8.164542484 8.348256037 8.156664506 8.163685248 8.023542972 7.850497697 8.010357216 8.432621569 8.496358762 8.245756198 7.81157806 8.24200124 209486089 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.375780827 8.259790184 8.569099961 8.154094888 7.954774349 7.756348054 7.796935108 8.34669546 8.335876144 8.276731319 7.836430597 7.749159803 108765029 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 10.13637724 10.16893645 10.31743532 9.88474238 9.727066825 9.662615274 9.689012982 9.454552194 9.498602151 9.682729569 9.64050401 9.80365598 188993153 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Xanthomonas campestris pv. campestris str. B100 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 8.897808943 8.708997327 8.694927012 8.548853545 8.437879562 8.321232049 8.621403902 8.695087165 8.763960848 8.582369155 8.40664882 8.541846652 46106 nifH Nitrogen Nitrogen fixation Rhodobacter capsulatus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 9.717000783 9.963279376 9.910335137 10.00774369 10.14378832 10.1607685 10.21407161 10.32515381 10.36028134 10.58159908 10.64646772 10.38389127 118571830 ArsC Metal Resistance Arsenic Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 8.69130585 8.599939997 8.347749307 8.63863469 8.758998895 8.51343211 8.865939023 8.589425002 8.626824908 8.884159136 8.640463781 224026620 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Bacteroides coprophilus DSM 18228 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides coprophilus; 8.595753739 8.977184774 7.675556887 7.848686087 8.043837766 7.986243334 8.304080658 70988715 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 8.458249356 8.447755596 8.578183018 8.463496797 8.110038059 7.576061995 8.084877218 8.46854975 8.16628509 8.409191577 8.259186679 8.389298265 146400991 glycosyl_transferase_EPS Bioleaching EPS Acidiphilium cryptum JF-5 8.160264427 8.313241448 8.261076667 7.707472936 8.66793141 8.724822876 8.716665619 8.590939226 8.813569535 8.704467716 8.609003988 85075715 tftH Organic Remediation Aromatics Chlorinated aromatics Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 8.1722864 8.197011307 8.1193725 7.74397002 7.677317802 7.685186346 7.614988475 7.694839548 7.873309705 8.005763597 7.475980745 115367244 CopA Metal Resistance Copper Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 9.54206689 9.468671446 9.164474968 9.907320746 9.886479678 9.977726303 9.478633818 10.12492127 9.166253107 9.676740434 9.916415903 9.915982719 153839081 CopA Metal Resistance Copper Vibrio parahaemolyticus AQ3810 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 8.576705574 8.193020223 8.550738405 7.762124257 7.552663666 7.815078185 7.832089321 7.273097525 8.132019838 7.184453754 7.264540984 7.927566254 56809485 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.790332312 8.681484793 8.851235309 8.281908952 8.212962445 8.160472274 7.947638913 7.863013376 8.297891321 7.819117528 7.706772439 8.2288144 114307279 pstC Stress Phosphate limitation Nitrosomonas eutropha C91 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas eutropha; 7.015652551 7.310195956 6.864711535 6.916852167 7.453168522 147831549 ara Carbon cycling Carbon degradation Hemicellulose Clavibacter michiganensis subsp. michiganensis NCPPB 382 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 8.390317324 8.463641849 8.45479641 8.222519291 8.066248259 7.9024349 8.417685774 8.886355795 8.526937084 8.694583435 8.894275706 8.972158308 119863768 nosZ Nitrogen Denitrification Psychromonas ingrahamii 37 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas;species:Psychromonas ingrahamii; 9.277067647 8.940224775 9.192362928 8.616642316 9.084109501 9.209651094 8.905048906 8.49653158 8.824629197 8.992684228 9.133579731 8.746731232 240168052 ahpC Stress Oxygen stress Mycobacterium kansasii ATCC 12478 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 10.43943209 10.69834265 10.61500155 9.645156817 9.681313069 10.92739737 121606102 fnr Stress Oxygen stress Polaromonas naphthalenivorans CJ2 8.24092892 8.178649672 8.369533432 7.390302031 8.072690862 8.449519954 8.691199039 7.847637023 8.647746356 8.174337729 7.93605977 8.003390037 116223333 exaA Organic Remediation Chlorinated solvents Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 7.595904534 7.405469766 7.746380564 7.211151392 7.261241811 7.52360173 7.41403272 7.222747613 7.605505808 257457988 ahpC Stress Oxygen stress Treponema vincentii ATCC 35580 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema vincentii; 9.422481123 9.369083358 9.391737229 8.872650831 8.889251692 8.582254187 8.172076027 8.107804652 8.332427205 8.359969283 8.613715038 8.784877254 220936365 obgE Stress Radiation stress Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 8.593678678 8.19249682 8.230902393 8.752605034 8.459583398 8.168570487 8.022814994 8.560623383 8.622952603 8.335826613 8.224616958 8.046490784 82548050 Catechol Organic Remediation Aromatics Other aromatics Nocardia sp. C-14-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia; 8.899916607 8.775859751 8.598131084 8.473959832 8.555934345 8.300209296 8.295745458 8.527979659 8.774836627 8.810364726 8.591680401 8.603532242 115369689 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 8.049166208 8.075286271 7.713888994 8.146619008 7.999137436 8.155281066 7.891449627 8.172137825 7.986102996 84664857 pnbA Organic Remediation Aromatics Nitoaromatics Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 9.164127379 9.163985472 9.121112438 8.503065153 8.644925501 8.552001542 9.071961817 8.648565604 9.121890763 8.518433373 8.747663366 8.749175715 222477152 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 9.093922472 9.225374635 9.305043974 8.22636222 8.95685363 9.090042996 8.305979574 9.126657739 8.735231491 8.880337526 9.04138797 3021634 gyrB other category gyrB Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.562274725 7.375013751 7.160397072 6.859794475 7.017137904 83316730 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 10.11422659 9.915881631 10.07001453 8.772657831 8.884782379 8.886693063 9.651297657 8.974510484 9.577982077 9.199530142 9.17032996 9.378223788 254982011 ahpC Stress Oxygen stress Nitrosomonas sp. AL212 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 8.63628451 8.604117354 8.691128357 8.081437564 7.681794891 8.013909599 7.833174464 7.431292072 8.272046822 7.801849713 7.718210013 8.135686856 124514476 Fe_S_oxidoreductase Bioleaching Electron transport Leptospirillum sp. Group II UBA 7.977706652 8.024228051 198257410 ppx Phosphorus Phosphorus utilization Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 8.866879822 9.327907567 8.689845044 8.922183378 9.284346158 9.249917091 9.552122966 9.167010609 9.18196487 9.124723926 9.263758521 9.400337909 259021636 hydrogenase Energy process Energy process Rhodobacter sp. SW2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 9.067014732 9.258324442 9.093301523 8.411920334 8.608960885 8.552489247 8.742175836 8.474681994 8.480122065 8.463010657 8.502598477 8.819353096 146155506 CadA Metal Resistance Cadmium Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 7.559447109 7.598312937 7.459145008 7.271010621 7.288961526 7.876577166 7.577288736 7.953345386 7.707206903 156233343 sigma_24 Stress Sigma factors Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 8.217541732 8.020522008 7.651209064 7.492562247 7.837974903 7.990293878 7.729414554 7.8773347 7.932260597 7.909580303 133754583 phenol_oxidase Carbon cycling Carbon degradation Lignin Ramaria sp. B305 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Gomphales;family:Gomphaceae;genus:Ramaria; 8.778974689 8.900036701 8.670218033 8.772036448 8.616709713 8.392049319 8.626802033 8.782157367 9.042173369 8.461096991 8.425168991 8.618821962 270334262 ppk Phosphorus Phosphorus utilization Prevotella bergensis DSM 17361 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bergensis; 8.194663259 8.385620524 7.223977941 7.455930783 7.571956043 7.799152171 7.4585045 7.853355337 7.619966513 7.568228658 7.378091181 183174604 pcc Carbon cycling Carbon fixation Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 9.752243219 9.697278022 9.934271341 9.601408519 9.752760029 9.333420247 9.721077517 10.18002372 9.998668433 9.80575051 9.538681193 9.906768776 145251856 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8.746506359 8.738199402 9.262939092 7.956161609 8.312531414 7.992308863 8.103700505 8.246934115 13474071 SMR_antibiotics Antibiotic resistance transporter Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 8.168287644 7.953389171 7.741937992 7.673719056 7.674554861 7.266497076 7.850672935 7.17343899 7.399250664 116255378 linC Organic Remediation Pesticides related compound Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 9.026446019 9.213062444 9.019820488 8.579482344 8.995870753 8.960302486 9.330237785 9.247890709 8.761652003 8.979733992 9.439289671 9.109638629 82618393 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.948965873 8.939693504 8.783857472 8.594026062 8.421864878 8.003588263 7.956249143 8.108980053 8.115611172 8.267122047 8.409882643 91719633 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 8.077645244 8.247227086 8.10201637 8.713430564 8.476698705 8.142321091 8.77395805 8.981418601 8.89700882 198267900 ureC Nitrogen Ammonification Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 8.1519147 8.241452321 8.520066881 8.101860781 7.994264829 7.949523055 7.939847535 7.923667218 8.085175138 7.98837007 7.956856968 7.96956966 163741421 nagG Organic Remediation Aromatics Aromatic carboxylic acid Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 9.768868643 10.08845588 9.974499748 9.336758342 8.90881463 9.658395452 10.05135604 9.58351748 10.06499519 9.692409288 9.663425684 9.821389088 170746766 gyrB other category gyrB Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 8.342331482 8.260331912 8.20010645 7.92458609 7.661695463 7.62564886 8.052171774 8.131611843 8.226484469 8.072508033 8.187938363 39934059 glnA Stress Nitrogen limitation Rhodopseudomonas palustris CGA009 9.537668545 9.473151829 9.217387124 8.738869434 8.801951896 8.850532658 8.930791818 8.9099898 9.132797272 8.568077563 8.673523158 8.94489643 254383440 AceB Carbon cycling Carbon degradation others Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 9.11740383 9.400839669 9.066025326 8.68168249 8.153414176 9.221501032 9.799634228 9.264728004 9.213988311 8.981408589 9.286130234 9.084007113 44829087 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.650937722 8.51927696 8.611770127 8.159065729 8.152824558 8.153497342 7.924352687 7.752180566 8.356409552 8.070516698 8.057401243 8.397960638 254514106 sigma_24 Stress Sigma factors gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.503538137 8.630843856 8.762082454 8.181240292 8.091360952 7.840816244 7.829685594 7.491724936 8.213884965 7.819325614 7.860470177 8.202214284 163258827 alkK Organic Remediation Others Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 9.400368539 9.350155155 8.719276079 9.12047158 8.915173268 9.038481279 9.459881549 9.099520768 9.140665521 8.910766727 9.155077095 8.860333785 119716047 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 9.527940195 9.299041895 9.401426569 9.061483383 8.869034658 8.622549569 8.790116996 8.936078944 8.668088126 8.806343342 8.968945736 9.127060813 85824319 PobA Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. MED193 8.196841052 8.297657711 7.624548565 7.621741493 7.574739958 7.245319759 7.977583244 7.259656934 7.278860756 7.588169286 854338 pectinase Carbon cycling Carbon degradation Pectin Didymella pinodes superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Didymellaceae;genus:Peyronellaea; 8.570661468 8.247558136 8.545026333 8.162435746 8.661542741 8.698968363 8.377968766 8.526433239 8.309444533 8.387446254 8.663834525 8.330477088 114332125 Mex Antibiotic resistance transporter Nitrosomonas eutropha C91 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas eutropha; 8.124675083 8.351801805 8.360899981 9.135818833 8.128000381 8.664352672 8.61486705 8.436568352 8.405510783 8.09973221 8.226647681 70730980 nmoA Organic Remediation Aromatics Nitoaromatics Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 9.480592701 9.001127781 9.53139989 8.978228686 8.610826121 8.707168555 8.457299698 8.368491056 8.525739166 8.303326709 8.91852577 126436662 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.732147393 8.652735356 8.447375723 7.697884913 8.037417403 8.150877695 7.79538222 8.32283114 163814269 akbF Organic Remediation Aromatics BTEX and related aromatics Coprococcus eutactus ATCC 27759 9.085692487 9.141631838 8.885222907 8.777930001 8.104832969 8.253531182 8.145556225 8.112634095 8.3064816 8.419610348 8.785935446 121589614 sigma_70 Stress Sigma factors Halorhodospira halophila SL1 8.279296084 8.771578154 8.539523536 7.741266782 7.892893502 8.054613189 8.15801418 7.971729317 8.333163833 7.7533097 7.938797534 8.008698471 239818024 oxyR Stress Oxygen stress Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 8.758679498 8.465009524 8.537367237 8.538446375 8.473544483 8.359492537 8.691592549 8.702718836 8.751376512 8.6590653 106766991 ZntA Metal Resistance Zinc Clostridium phytofermentans ISDg 8.271362885 8.014609916 7.901448954 7.83867171 7.714931997 7.764073388 7.844438402 8.085693958 219666359 dmsA Organic Remediation Others Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 9.475115389 9.168677246 8.972002669 8.778527681 8.973417759 8.846745843 8.798495929 8.957899866 8.751683098 8.836325542 8.759602005 8.871550454 60476245 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 8.388361384 8.07712349 8.235647148 8.073827379 8.336963924 8.694394699 8.3568551 8.293577666 8.315763651 8.043745953 8.597621873 8.070412433 118165597 CDH Carbon cycling Carbon degradation Cellulose Mycobacterium avium 104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 8.902433508 8.644315863 8.719094085 8.175204636 7.77244078 8.261419525 8.281137997 7.911948974 8.224956711 8.049703989 8.117279289 8.300423397 13751047 PceA Organic Remediation Others Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 8.355736269 8.218153766 8.627724777 8.188788488 7.723180034 8.188252716 8.355656659 8.541605154 8.165844504 8.10768998 8.012583705 196258172 phoA Stress Phosphate limitation Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.760730118 8.615909289 8.88015154 8.02771006 8.05628562 7.836664979 8.189298673 7.924601574 7.865521727 7.859650182 8.193530248 73543058 CopA Metal Resistance Copper Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 9.591087433 9.336380746 9.456496948 8.630466 8.701885662 8.797561411 9.066752423 8.283626125 8.952951177 8.905243887 9.076542857 9.15573033 146153399 nbaC Organic Remediation Aromatics Nitoaromatics Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 7.816634797 7.729297487 7.740561529 7.24315743 7.744319689 7.789129096 7.863251369 8.075385205 8.031929106 169810882 cytochrome Energy process Energy process Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 8.601060566 8.475116493 8.533487188 8.128893977 8.067891991 8.097962924 7.702961228 8.142223313 8.242275323 7.816971806 8.010395406 8.468541893 256372073 hrcA Stress Heat shock Acidimicrobium ferrooxidans DSM 10331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Acidimicrobiales;family:Acidimicrobiaceae;genus:Acidimicrobium;species:Acidimicrobium ferrooxidans; 9.095088233 9.38838683 9.042004383 8.227619384 8.306342989 8.300943232 8.552574364 8.42727251 8.779616443 8.64295137 8.657280012 8.613557507 187725787 CadA Metal Resistance Cadmium Ralstonia pickettii 12J 9.33791397 9.0580498 8.669984409 8.528091358 8.792738224 8.315334544 8.862319349 8.968309156 8.52846529 8.495816334 171679210 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Podospora anserina superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 8.711844132 8.775202242 8.83689117 8.1509085 8.199548364 8.402856919 8.687104043 8.318981382 8.227105691 8.119891616 8.432305752 2627157 bphF1 Organic Remediation Aromatics Polycyclic aromatics Acinetobacter sp. YAA 9.987819514 9.850782678 10.21344945 9.353548627 9.540724144 9.314437222 9.352776901 8.984710948 9.606307537 9.582774108 9.606840115 9.537969266 169239582 TerC Metal Resistance Tellurium Mycobacterium abscessus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.295559444 8.235416446 8.291680598 8.16869105 8.421452636 8.087040874 8.286434402 8.699818076 8.390142341 8.599560573 8.152489086 8.491167042 118746000 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 8.376117265 8.183858958 8.546277154 7.70663891 7.878021684 7.911296439 7.880625416 8.42435882 8.105333388 8.645792471 8.022186801 8.053978053 2105096 narI Stress Oxygen limitation Thermus thermophilus superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus; 8.55212385 8.582883066 8.355096199 8.341050711 8.361535715 8.406979194 8.646537883 8.578289942 8.639973243 8.626946612 8.51634296 8.565366214 83025990 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 8.668383957 8.592165899 8.738415301 8.38383774 8.367153885 8.147521037 8.26579391 8.245053317 8.405293822 8.014944138 8.300926164 7.931629192 83844818 HBH Organic Remediation Aromatics BTEX and related aromatics Sulfitobacter sp. EE-36 8.483835377 8.34666673 8.457554089 7.966513631 7.914491949 7.856215714 7.90136146 7.960283871 7.932634937 7.880575776 8.11338667 111152727 fnr Stress Oxygen stress Frankia alni ACN14a 8.374242612 8.531193933 8.387087344 7.997972131 7.99609496 7.935421937 8.562987934 8.05766592 8.370744023 7.947586831 8.15206278 7.908024667 70731214 benD Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens Pf-5 8.102701992 8.904757431 8.059188637 8.644273765 8.664465347 9.007247861 8.494189672 8.265328949 8.357494462 8.241388588 134142977 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 8.963057699 8.733763984 8.828605812 8.35876756 8.204204022 8.22960701 8.228398107 8.088812843 8.453735921 7.94215137 7.923446782 8.324504455 146403431 FTHFS_Bioleaching Bioleaching Carbon fixation Acidiphilium cryptum JF-5 8.68819638 8.523770866 8.470737055 8.288118544 8.300817755 8.369412672 8.044905024 8.054956632 8.440806323 8.077398535 8.409978684 7.96328418 71366038 pcc Carbon cycling Carbon fixation Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.765213224 8.343749815 8.806117087 8.801106113 8.905789891 8.17546251 9.035330833 8.352221761 8.633111086 8.89520933 8.30487017 115422656 ChrA Metal Resistance Chromium Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 9.440825716 9.518375825 9.406988747 8.832701118 8.950367165 8.946684562 9.07381443 9.169234116 8.81314951 9.142095665 9.089544932 9.27471621 170720004 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.706997151 8.844451344 9.16498008 8.447306306 8.3777461 8.203680291 8.249498083 8.239794594 8.274245103 7.984265495 8.127976948 8.272369154 92913835 gyrB other category gyrB Mycobacterium sp. KMS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.624403911 8.385228767 7.845704513 8.605409405 8.825902765 9.083824016 8.637838016 8.686642206 9.03807107 9.023439221 9.173496827 69246505 nplT Carbon cycling Carbon degradation Starch Enterococcus faecium DO 8.586131312 8.593575354 7.968738767 7.648315695 7.550716471 7.154299134 7.142286675 7.504571044 7.56480849 8.028550452 149181950 glnA Stress Nitrogen limitation Bacillus sp. SG-1 8.866929908 9.041600793 9.024584921 8.780248368 8.940149824 8.858867496 8.787914981 9.006360455 8.766242861 8.973585765 9.007140326 8.637460378 260865866 nrfA Nitrogen Dissimilatory N reduction Ammonifex degensii KC4 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Ammonifex;species:Ammonifex degensii; 9.483856347 9.345478494 9.63517213 8.49545703 8.202954989 8.115673449 7.916196466 8.049523429 8.800494737 83851526 obgE Stress Radiation stress Oceanicaulis alexandrii HTCC2633 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis;species:Oceanicaulis alexandrii; 8.617235797 8.819491123 8.685399694 8.562549072 8.377428963 8.226211814 8.528622872 8.922208299 8.809150185 8.554226529 8.635561288 8.476325243 116072048 hrcA Stress Heat shock Synechococcus sp. BL107 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.433954135 8.324364434 7.411916687 7.899431869 7.365069448 7.669840264 256689983 gyrB other category gyrB Halorhabdus utahensis DSM 12940 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus utahensis; 8.953824716 8.926153408 8.91002827 8.800428854 8.745401825 8.637772314 8.591012355 9.158014113 8.734328787 9.140059028 9.126082464 9.152576303 171278942 clpC Stress Protein stress Bifidobacterium dentium ATCC 27678 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium dentium; 8.767588605 8.974271844 9.255633631 7.794637226 7.706948763 7.72019736 7.551274064 7.713502029 7.720139393 7.807592714 7.637416608 7.602778686 196184858 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Brevundimonas sp. BAL3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas; 8.548645805 8.770419015 8.548839445 8.509644041 8.88500511 8.209234519 8.72666653 8.681248968 8.816511453 82568127 gyrB other category gyrB Thermoactinomyces intermedius superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Thermoactinomycetaceae;genus:Thermoactinomyces; 9.214076817 9.224842034 9.17651073 8.611138349 8.505198641 8.471193976 8.192677419 8.394758111 8.268945017 8.488801712 8.530226224 8.742879425 262393885 nrfA Nitrogen Dissimilatory N reduction Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.455078645 8.166567236 8.506055348 7.812443112 8.105657192 8.219060718 8.700389269 7.506350765 7.912839908 8.20061844 8.335927202 144897350 CopA Metal Resistance Copper Magnetospirillum gryphiswaldense MSR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 9.715570259 9.164247279 9.322152253 9.27817484 9.101716116 8.7812579 9.303720288 9.151112647 9.423902814 9.246608844 9.3509224 8.926109502 85062751 nifH Nitrogen Nitrogen fixation Desulfitobacterium dehalogenans superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium; 8.005971462 8.269672123 7.500057114 7.428925415 7.304327439 7.215475853 7.376717549 7.653499659 7.66482048 7.278914493 7.607164934 125712789 endoglucanase Carbon cycling Carbon degradation Cellulose Clostridium thermocellum ATCC 27405 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 9.420285009 9.426466003 9.622169037 8.772294942 8.85058353 8.707927201 8.434588366 8.397460942 8.509811547 8.816516817 8.814051598 8.971698305 125745171 mcrA Carbon cycling Methane Methane production uncultured archaeon superkingdom:Archaea; 8.445022051 8.244643003 8.321857218 7.954591385 7.890156832 7.787488575 7.607680704 7.613575442 7.842442462 8.021650015 7.744333165 121592557 pimF Organic Remediation Aromatics Aromatic carboxylic acid Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 8.199068352 8.346766899 8.276233324 7.986119476 7.895134189 7.94099638 7.926935105 8.048189269 7.587135568 7.787795453 148499890 Catechol Organic Remediation Aromatics Other aromatics Sphingomonas wittichii RW1 8.4394394 8.465030884 8.358039581 8.036953019 8.100320176 8.325460613 8.143431667 7.887172483 8.103010472 7.753081591 225792228 pstB Stress Phosphate limitation Acidobacterium capsulatum ATCC 51196 9.66811884 9.593567155 9.418875327 9.711633642 9.472106627 9.037901164 9.81692793 9.731407791 9.769109751 9.214445732 9.145629404 116186064 pcaG Organic Remediation Aromatics Other aromatics Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.03858189 8.157407834 8.176414178 7.500322869 7.28954688 7.387110068 7.188811598 7.311438645 7.439125638 7.371511423 163743742 gyrB other category gyrB Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 8.995501194 8.522219123 8.540136459 8.942270203 8.576871435 8.462294723 8.895060497 8.985398205 9.160173467 9.352423568 8.639637245 70986384 iro virulence Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 9.068030241 8.995255315 9.231361975 8.622915081 8.529367512 8.525396473 8.456202212 8.617661285 8.455760501 8.648378948 8.614436114 8.738858446 197778952 TerD Metal Resistance Tellurium Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 9.237131925 8.81798182 9.06147388 9.580447502 9.496778915 9.021312667 9.298871905 9.238859308 8.80566951 8.940351319 9.184350399 9.126068557 70989413 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 8.349612 8.536283324 8.278834405 7.990172949 7.794640393 7.532720494 7.396583918 7.812609055 7.827635562 7.527128042 261204309 phenol_oxidase Carbon cycling Carbon degradation Lignin Ajellomyces dermatitidis SLH14081 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 7.991144259 8.51975837 7.868292891 8.005408884 7.978603274 7.802955672 8.305353548 7.984262482 8.610468849 8.107281019 8.279940734 187726482 narI Stress Oxygen limitation Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 7.380601352 7.421892992 7.446637733 7.600257695 7.153745511 7.896373741 7.125593772 7.090245633 7.654471264 85824364 hly virulence hemolysin Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 9.291279993 9.287286987 9.205981224 9.098392166 8.984139775 9.004009015 9.312863073 9.027559891 9.603774435 9.095042559 9.561341915 9.086804099 119356173 clpC Stress Protein stress Chlorobium phaeobacteroides DSM 266 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 8.7381601 8.863149921 8.764913306 8.091469437 8.095555447 8.108665284 7.795092495 7.669443575 8.420720114 7.74240993 7.674187435 8.024020866 169627286 pcc Carbon cycling Carbon fixation Mycobacterium abscessus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.629483644 8.632687556 8.557773465 8.916433945 8.810734458 8.34637489 9.01760992 9.104286612 8.383558434 8.852488132 8.694054368 83017277 gyrB other category gyrB Microbulbifer sp. MBIC06448 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Microbulbifer; 9.505342033 9.652748927 9.572873298 8.903830002 8.974972606 9.173605743 9.212615617 8.891809146 9.089699719 8.949218957 8.995260713 9.236151128 229593278 ppx Phosphorus Phosphorus utilization Pseudomonas fluorescens SBW25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.791895678 8.736122592 8.861290519 8.215698043 8.440530972 8.357389214 8.235815303 8.294952967 8.744510388 8.174055688 8.634524862 8.325094947 253826073 endochitinase Carbon cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 8.743072909 8.328489559 8.491958917 8.041909686 8.125658742 7.99403113 8.155577586 8.094987537 8.173846817 8.260489275 8.133142686 8.219603177 83757249 glnA Stress Nitrogen limitation Salinibacter ruber DSM 13855 9.551816573 9.507846137 9.40775422 8.953092888 8.85084753 8.873538095 9.045837168 8.62560514 9.053030264 8.749760307 8.696402893 8.950124676 261210839 endochitinase Carbon cycling Carbon degradation Chitin Vibrio sp. RC341 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.956062064 8.73848103 8.756993883 8.221697038 8.085640017 8.047192551 7.901648971 7.740302806 8.194069744 8.159195979 8.169315225 8.303685052 145218150 TehB Metal Resistance Tellurium Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.132141037 8.05466201 8.555608609 7.842924341 7.837475362 7.745921173 7.697222348 7.574070272 7.88545107 7.765567586 7.574214516 7.633890949 119817281 CadA Metal Resistance Cadmium Pseudomonas putida W619 8.408710773 8.192908071 8.087072082 8.357797745 8.364899649 8.314493072 8.40561864 8.416248008 8.365260896 8.207948163 8.18114687 7.875272506 161380189 ppx Phosphorus Phosphorus utilization Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 8.37154273 8.352909274 7.729824019 8.303470523 8.398877639 7.934764493 8.423670707 8.137613154 7.911847391 8.116253505 226358221 pstS Stress Phosphate limitation Deinococcus deserti VCD115 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 8.093671161 8.244478953 8.134097257 8.306670828 8.463699793 8.183837273 8.774932661 8.213897427 8.193753139 154281373 ureC Nitrogen Ammonification Ajellomyces capsulatus NAm1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 9.09991854 9.060831225 8.78598453 8.139345 7.887103128 8.090647397 8.669966372 8.566713615 8.062654673 7.912534709 170747022 nagG Organic Remediation Aromatics Aromatic carboxylic acid Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 11.23485938 11.0555756 11.14350967 10.65800015 10.59233109 10.39700867 10.35485849 10.08591318 11.00722702 10.79305577 11.05406638 10.75832611 88804161 ZntA Metal Resistance Zinc Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 8.230350844 8.378770289 8.394221309 8.355204104 8.325431125 8.065138855 7.927920985 8.040952367 8.135154604 8.249071894 7.720455644 41745840 iro virulence Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 8.957445804 8.939148678 8.676442199 9.000778471 9.161402922 8.850411046 8.71546201 9.108393943 8.901136477 8.894746437 8.789656648 8.989904385 33320460 dsrB Sulphur sulfite reductase Desulfohalobium retbaense superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium; 9.151776139 9.018360927 9.297534343 8.645782387 8.631741158 8.483498424 8.231962244 7.967053575 8.66681001 8.185299762 8.045881149 8.614484548 28805042 SMR_antibiotics Antibiotic resistance transporter Vibrio parahaemolyticus RIMD 2210633 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 9.581290086 9.542761413 9.578343689 8.780186014 8.917029172 8.738121896 8.780476318 8.932149353 8.666635991 8.813959228 8.842760992 9.219548845 212668296 ChrA Metal Resistance Chromium Bacteroides finegoldii DSM 17565 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides finegoldii; 8.32344457 8.174222758 8.626738759 8.021095694 7.94837948 7.897668292 7.741199337 7.546947497 8.071086518 7.84648154 7.641669072 8.019034531 226315357 sigma_24 Stress Sigma factors Brevibacillus brevis NBRC 100599 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus brevis; 8.121501795 7.862891209 7.212089903 7.168614998 6.990096264 78218725 tutFDG Organic Remediation Aromatics BTEX and related aromatics Desulfovibrio desulfuricans G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 8.406649368 8.196722774 8.329062068 7.985165841 7.862523327 7.795690793 7.681556463 8.033681519 8.216333668 7.818525671 7.761158366 8.116095264 126618072 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Cyanothece sp. CCY0110 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.77001971 8.483663103 8.924970433 8.433553963 8.509447183 7.922686426 8.033849251 7.954530768 8.006196218 8.178569178 8.043914825 8.169635348 192361536 pilin virulence pilin Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 8.155446667 7.890745163 7.193887219 7.151278278 6.986031972 6.742833435 119487794 gyrB other category gyrB Lyngbya sp. PCC 8106 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Lyngbya; 8.669530416 8.391798964 8.768750194 7.767404611 7.785968757 7.906553859 7.326419304 7.382490669 7.783933964 7.841626123 7.917469032 67924692 clpC Stress Protein stress Crocosphaera watsonii WH 8501 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Crocosphaera;species:Crocosphaera watsonii; 10.35082712 10.04758982 10.10360425 9.569377284 9.745163441 9.67822629 9.510472376 9.879098637 9.806318914 9.95609906 10.13188099 9.64532698 192897546 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 8.02043929 8.325690922 8.159145778 7.809905182 7.74834192 8.40987644 8.636000394 8.028049831 8.413075681 8.452264522 8.329973933 8.505982289 124260432 fnr Stress Oxygen stress Methylibium petroleiphilum PM1 10.01903301 10.0571828 10.08572998 10.45682234 10.45985171 10.28910532 10.7316018 10.5851656 10.4992836 10.42792744 10.48991487 10.31747098 195542021 fnr Stress Oxygen stress uncultured bacterium 1114 8.544208905 8.552551328 8.797469165 8.149051683 7.967410088 8.109501553 8.015846915 7.917181564 8.063293546 7.98860055 8.111423227 8.34317635 93353758 ureC Nitrogen Ammonification Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.353013832 8.541764841 8.452572472 7.853718554 7.854086708 7.899946103 7.925851343 8.157765951 8.597225107 8.207221145 85698332 katE Stress Oxygen stress Nitrobacter sp. Nb-311A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter; 8.930800953 8.865017404 8.725290245 8.513030261 8.501583421 8.113583354 8.470098129 8.76694543 8.812871238 8.7513994 8.724297612 187766738 endoglucanase Carbon cycling Carbon degradation Cellulose Trichoderma viride superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Trichoderma; 8.36059591 8.188665932 8.166470957 8.81808563 8.917900613 9.013254661 8.983962514 8.691863468 8.703268166 8.914115625 8.733523956 167588009 TerD Metal Resistance Tellurium Burkholderia ubonensis Bu superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ubonensis; 8.173133228 8.062421864 7.845996761 7.716575439 7.833926066 7.897710376 7.39845271 7.790290419 7.521450025 7.65713132 7.798983509 148548465 TerC Metal Resistance Tellurium Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.57508247 8.539025171 8.723305203 8.406658826 8.382560879 8.139351241 8.809692986 8.627195041 8.413333526 8.443540614 8.262344269 8.283805533 38373205 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.315897907 8.407694305 7.305315124 7.421514022 7.202139131 7.641966856 161760696 obgE Stress Radiation stress Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 9.04635021 8.949533407 8.549852533 9.201178694 9.105918008 8.971661735 8.953074154 9.520057274 9.204254942 9.094083436 8.846701437 207723482 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia solanacearum MolK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 9.526286531 9.669065482 9.176203478 9.285573535 9.632734846 9.744846099 9.789208892 9.733393581 9.83480344 9.825240899 9.953409946 9.846118543 218355607 ppk Phosphorus Phosphorus utilization Escherichia fergusonii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 8.424444368 8.195726184 8.691511537 8.722936467 8.490127462 8.392518599 8.863487057 8.67050143 8.416091046 7.901818009 8.499740117 134136812 tfdA Organic Remediation Aromatics Chlorinated aromatics Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 9.557749943 9.288784239 9.38679491 8.909177757 9.112706538 9.110290423 9.249831127 8.945879519 9.458661493 9.181925685 9.195632891 9.178640809 255922080 amyA Carbon cycling Carbon degradation Starch Actinosynnema mirum DSM 43827 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinosynnemataceae;genus:Actinosynnema;species:Actinosynnema mirum; 9.987645322 10.04644698 9.741172925 8.821185078 9.251691577 9.352074365 9.446225453 9.283747796 9.724834554 9.045095175 9.25118923 9.179008378 150029098 ureC Nitrogen Ammonification Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 9.270974234 8.881768078 9.401835348 8.73730298 8.772722598 8.88751408 9.112082377 8.851865326 8.613308374 8.705412961 8.522240097 68230061 CODH Carbon cycling Carbon fixation Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.280177126 8.688351544 8.647325415 8.814182424 8.828050311 8.341071063 8.946254682 8.172265997 8.649371164 8.75954263 9.212961977 86160229 dehH109 Organic Remediation Chlorinated solvents Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 8.095337203 8.412178065 8.362798255 8.375632975 8.194345279 7.950788095 8.159202485 8.644844404 8.4083697 8.567647203 8.488383064 8.470183394 121590608 oxyR Stress Oxygen stress Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 8.513636155 8.492102628 8.519322186 8.764980838 8.716160921 8.431462271 8.409053672 8.963947893 8.563260132 8.766104417 8.436717926 8.628768287 256487040 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 8.189515824 8.537443948 8.37181614 8.477771959 8.397342321 7.867987194 8.530594031 8.462417159 8.479233321 8.42180621 8.47430649 7.895545395 190895247 BADH Organic Remediation Aromatics Other aromatics Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 9.751999794 9.866996166 9.787370446 9.31573721 9.680577974 9.508102249 9.827760092 9.850524353 9.547960412 9.915818461 9.962267547 9.716090972 80563490 narG Nitrogen Denitrification uncultured bacterium 8.222409458 8.176334149 8.234673736 8.056353806 7.91796031 7.780427062 7.621713546 7.691662012 7.874405202 7.794847497 7.622218769 7.724607641 145409279 mannanase Carbon cycling Carbon degradation Hemicellulose Caldicellulosiruptor saccharolyticus DSM 8903 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Caldicellulosiruptor;species:Caldicellulosiruptor saccharolyticus; 8.68394845 8.234628026 8.51795476 7.511914235 7.592443192 7.464710006 7.290279357 7.294928441 7.878393533 7.40465324 7.514012576 7.49927242 4240018 pheA Organic Remediation Aromatics Other aromatics Comamonas testosteroni superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 9.632253231 9.592101459 9.618352863 9.298848071 9.254911189 9.085893455 9.367509142 9.164108928 9.3061977 9.33767964 9.598940578 9.17659427 37955598 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.276663425 7.978603047 8.229323109 7.473384069 7.457294836 7.440397867 7.036103135 6.903882941 7.631429839 7.202501169 7.162697088 7.49392322 21233314 mer Metal Resistance Mercury Xanthomonas campestris pv. campestris str. ATCC 33913 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 8.383337265 8.495657648 8.096664092 7.982381105 8.059776234 8.373391221 8.294025557 8.335260835 8.534620507 8.324221062 209959990 pstB Stress Phosphate limitation Rhodospirillum centenum SW 9.939403226 9.797376485 9.965331281 9.217262704 9.25415596 8.968670057 9.40608428 9.170493475 9.410905831 8.993002631 9.384443959 9.203130936 86282221 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.725027751 8.182188531 8.44581764 8.422825342 8.221810334 7.809941288 8.140635958 8.082093792 8.159097745 7.800679541 7.894482459 7.917367635 212673445 sigma_32 Stress Sigma factors Desulfovibrio piger ATCC 29098 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio piger; 8.079281418 7.87847127 7.555737016 7.533204978 7.580821108 7.658166676 7.405623425 7.519448577 7.353610165 7.796152484 86160526 SMR_antibiotics Antibiotic resistance transporter Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 8.524009702 8.625801494 8.831176376 7.713894454 8.520603472 8.493954869 8.971203555 7.684680401 8.930083664 8.208142943 8.413072798 8.608998203 186970673 obgE Stress Radiation stress Elusimicrobium minutum Pei191 superkingdom:Bacteria;phylum:Elusimicrobia;class:Elusimicrobia;order:Elusimicrobiales;family:Elusimicrobiaceae;genus:Elusimicrobium;species:Elusimicrobium minutum; 8.964239948 8.874832136 9.065090949 8.247589782 8.217199938 8.297879254 8.028039554 7.820324206 7.819703816 7.814934223 8.281010013 167033899 phdCI Organic Remediation Aromatics Polycyclic aromatics Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.201388148 8.236275817 8.455252878 7.939906937 8.298132673 8.19558655 7.990455987 8.418756964 8.480998029 8.870080291 8.742434583 8.42547252 149174334 katE Stress Oxygen stress Planctomyces maris DSM 8797 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces maris; 9.083991751 9.167084017 9.635495719 9.871977865 9.939647968 9.839404162 9.52869996 10.19824095 9.547380278 9.946779894 9.847629771 10.13728977 83944375 Arylest Organic Remediation Aromatics Other aromatics Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 9.536013797 9.540418176 9.677960153 8.957577245 8.921261939 8.800469771 8.774425513 8.915579407 8.474430414 8.851923927 8.977314294 9.365456767 39951363 ureC Nitrogen Ammonification Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 8.298472157 8.617707367 8.526270376 8.187120949 7.898507502 8.023988185 8.112285835 8.020971951 8.093026793 7.979400803 8.181067267 258581200 endochitinase Carbon cycling Carbon degradation Chitin Vibrio mimicus VM603 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 8.279956912 8.233830027 8.356104607 7.628008234 8.046063045 8.269581494 7.111249516 8.454702452 7.529691071 7.566825156 7.524103689 189191086 nitA Organic Remediation Aromatics Other aromatics Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 8.707852295 8.400416714 8.993824947 8.350020958 7.789725783 8.265578081 78694652 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 9.06449659 8.892331039 8.938275068 8.210861321 8.178107798 8.164494737 8.558523268 8.381162833 8.674495556 8.133938801 8.271649563 8.341280959 154253158 glnA Stress Nitrogen limitation Parvibaculum lavamentivorans DS-1 8.285775475 8.29522543 8.586230081 8.148966908 8.204374599 7.829282666 7.968763844 8.308587133 8.088999967 8.290886754 7.980573659 8.219139011 198256435 Arylest Organic Remediation Aromatics Other aromatics Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 8.407680602 8.357057343 8.346072421 8.197354218 8.358031233 8.350968724 8.014414614 8.452032639 8.371239675 8.396249087 8.459229859 8.423925933 209551034 Catechol Organic Remediation Aromatics Other aromatics Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 9.184524201 9.107976149 9.315810339 9.629646786 9.521368578 8.755137409 9.413208621 9.939109689 9.418869226 9.623150649 9.283816105 9.785459205 146279820 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 9.077903614 9.031794608 9.155879286 8.640891247 8.561780151 8.31170321 8.489438628 8.514183845 8.502552204 8.480728269 8.647805973 8.839488243 145557350 AceB Carbon cycling Carbon degradation others Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 8.993156738 9.065896844 9.15224668 8.625642822 8.618002622 8.611849575 8.576658476 8.794507016 8.802158479 8.824819137 8.869340711 8.732400715 118717536 chnB Organic Remediation Other Hydrocarbons Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 8.886090323 9.083192171 9.119577988 9.15657119 9.117492736 8.879234778 9.09031185 9.427987497 9.300059805 9.590561786 9.38424762 9.454197249 67902980 xylanase Carbon cycling Carbon degradation Hemicellulose Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 8.873287566 8.715479513 9.064804724 7.996774549 8.348812227 8.153841797 7.796790352 7.544769457 8.040166286 7.913960857 8.246610796 119952281 glnA Stress Nitrogen limitation Arthrobacter aurescens TC1 8.025856961 7.827136463 7.229829241 7.470239047 7.506922621 7.755755343 7.43757359 7.271509984 7107367 exoglucanase Carbon cycling Carbon degradation Cellulose Trichoderma harzianum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 8.784386806 8.84839382 8.851848894 8.686603249 8.542566295 8.447549347 8.630409929 8.794400019 8.717432657 8.896926483 8.830816355 9.125039244 196170815 silC Metal Resistance Silver Anaeromyxobacter sp. K superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 8.765847609 8.998458943 9.099219129 8.361010596 8.425628162 8.730213829 9.137606132 8.634992105 9.385146186 8.98903394 8.711442384 8.916407633 119413700 BpH Organic Remediation Aromatics Aromatic carboxylic acid Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 8.280307196 8.577220152 7.824816392 7.994746942 7.654188776 7.580171661 7.815257547 7.995183336 257057344 B_lactamase_C Antibiotic resistance Beta-lactamases Saccharomonospora viridis DSM 43017 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora viridis; 8.643366546 8.468640516 8.483317639 8.951465011 9.062031771 9.002886066 8.514287454 9.325072392 8.510389398 8.882488593 8.864950493 9.115435843 145225970 CadA Metal Resistance Cadmium Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.803368685 9.355384903 9.231842493 8.704179544 8.501051603 8.633077411 116697830 sigma_24 Stress Sigma factors Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 9.558812049 9.455100632 9.508239133 8.957518462 8.700152317 9.008797244 9.248432501 9.258545706 9.174380145 9.428288679 9.550800702 9.496800831 72496249 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus saprophyticus; 8.406472978 7.9325246 8.018759869 7.886615985 8.062827235 7.555275649 7.797056816 7.771790759 8.019916717 8.074391263 147830136 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Clavibacter michiganensis subsp. michiganensis NCPPB 382 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 8.454111967 8.255615828 8.064792363 7.667443695 8.136649369 8.218532534 7.950315723 8.122299852 7.986625756 7.72351444 7.768219083 149821591 bphA Organic Remediation Aromatics Polycyclic aromatics Plesiocystis pacifica SIR-1 8.785999293 8.712849462 8.8455006 8.352336031 8.085603342 7.749748673 7.849971501 8.066804599 7.844825857 7.927024668 110287223 AceB Carbon cycling Carbon degradation others Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 8.094723051 8.114420495 7.979144544 7.351884079 7.278358322 7.282405061 257809573 pstB Stress Phosphate limitation Enterococcus casseliflavus EC20 8.281657091 7.874804454 7.547052587 7.637891775 7.634957285 7.231470992 7.826243586 46520023 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9.456527806 9.466743997 9.482171635 9.142117709 8.971987138 9.324347428 9.571540919 9.004184448 9.889687105 9.184313107 9.165603147 9.282783156 161075721 CopA Metal Resistance Copper Verrucomicrobiae bacterium V4 superkingdom:Bacteria;phylum:Verrucomicrobia;order:Methylacidiphilales;family:Methylacidiphilaceae;genus:Methylacidiphilum;species:Methylacidiphilum infernorum; 9.00647165 8.665305969 8.859294483 8.004560452 7.961372625 8.176762082 8.151515219 8.033833299 8.274972853 8.165234823 7.906123953 8.312089957 116748652 sigma_38 Stress Sigma factors Syntrophobacter fumaroxidans MPOB 9.022040292 9.098190566 9.132229855 8.620224194 8.388062995 8.53921632 8.17761956 8.347877039 8.353520195 8.364426636 8.398953051 8.621831945 158333063 ArsC Metal Resistance Arsenic Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 10.14490254 9.955288759 9.989474421 8.968456655 9.665164925 9.622976924 9.688470635 8.78026968 9.932390421 9.211893543 9.4221595 120599747 ArsC Metal Resistance Arsenic Shewanella sp. W3-18-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 7.804033033 8.136719986 8.206537802 7.757923875 8.122128642 7.342439358 7.437508917 7.53641015 207087828 sigma_70 Stress Sigma factors beta proteobacterium KB13 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 7.836470442 8.240641453 6.761062594 7.364351211 34017186 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 8.335502816 8.462737519 7.591749333 8.148158199 7.615324997 7.426635377 8.063864408 7.493622362 7.75866229 1617425 dmsA Organic Remediation Others Rhodobacter capsulatus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 7.40457486 7.612482048 8.185208691 7.981219558 7.559118219 8.102779867 7.963378308 7.832400312 7.985428525 196112630 mer Metal Resistance Mercury Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 8.464970093 8.021950896 7.845569337 8.113946987 7.970911853 7.91784233 7.745933612 8.130579048 89070845 amyA Carbon cycling Carbon degradation Starch Oceanicola granulosus HTCC2516 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 7.73295116 7.54690271 7.445328102 7.655840072 7.414650024 8.278019982 7.613604809 7.606825101 7.955442226 83756282 endochitinase Carbon cycling Carbon degradation Chitin Salinibacter ruber DSM 13855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 8.311948119 8.575439508 8.273266277 8.085173431 8.029202864 8.247605518 8.287235275 8.384049456 8.217141858 8.039809144 8.287497847 78049837 xylanase Carbon cycling Carbon degradation Hemicellulose Xanthomonas campestris pv. vesicatoria str. 85-10 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas euvesicatoria; 7.770676548 7.966580257 8.005615298 8.154408777 7.811131134 8.359767393 8.039129074 8.194208886 8.006421176 255263046 obgE Stress Radiation stress Thalassiobium sp. R2A62 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Thalassobium; 8.549101823 8.448940254 8.200332933 7.575366668 8.062148502 8.180171782 7.764580145 7.89137389 7.871795197 8.115617061 219996989 CopA Metal Resistance Copper Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 8.333215174 8.127945961 7.696978188 7.623736438 7.785653229 8.134328202 7.839573337 8.34842797 7.847883244 7.822674204 7.797440692 262349330 iuc virulence aerobactin Vibrio sp. RC586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.31687892 7.087227254 7.067064033 6.962666126 6.693105184 7.541698371 7.128989695 7.324443438 239910700 ABC_antibiotic_transporter Antibiotic resistance transporter Thermococcus gammatolerans EJ3 9.288412476 8.693486055 8.350126012 8.123373646 8.061371204 8.716776631 8.621711299 8.947124505 212561457 fnr Stress Oxygen stress Anoxybacillus flavithermus WK1 7.12623033 7.169545049 83373543 CopA Metal Resistance Copper Rhodobacter sphaeroides ATCC 17029 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 7.579226605 7.668523263 7.81133186 8.117331067 7.728349737 7.473505994 7.625611259 7.652918679 145592995 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 7.268359327 7.153444015 7.484231249 7.7490212 6.790275504 7.680626046 7.405703786 7.084872868 7.674339471 146398104 pstC Stress Phosphate limitation Geobacter uraniireducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 8.77922405 8.613951696 9.224548033 9.170007147 8.969887853 8.824293607 9.020420963 8.787200988 9.121866984 8.844631311 8.226742175 220709732 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.208144737 7.973718681 7.822642496 7.746135915 7.919380534 7.859659423 8.084379962 8.482452109 8.328578602 8.202484924 227091152 oxyR Stress Oxygen stress Corynebacterium glucuronolyticum ATCC 51867 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glucuronolyticum; 8.383453945 8.468167173 8.357995874 8.144912423 8.145120288 7.794512252 8.209739165 8.17759465 7.873726979 8.093068454 7.846314228 154251305 pimF Organic Remediation Aromatics Aromatic carboxylic acid Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 7.861809133 8.536166441 8.354126877 8.33820918 8.266985779 8.199995358 8.365650644 8.240897462 23494032 hrcA Stress Heat shock Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 7.274684788 7.432545705 7.573578427 7.270627485 7.132829522 6.981580457 260881604 ctsR Stress Protein stress Mitsuokella multacida DSM 20544 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Mitsuokella;species:Mitsuokella multacida; 8.062539016 8.443262783 7.93477978 7.778768395 7.69889463 7.670860874 7.857881925 8.029194418 7.929391098 7.651831943 7.812109842 110819060 PobA Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.51460017 8.318511971 7.666003242 8.184396413 8.352529853 8.424888071 7.833722336 7.787998488 8.162047523 8.082628815 259025996 pstB Stress Phosphate limitation Ferroglobus placidus DSM 10642 8.272452812 8.383755726 7.651269578 7.581017803 7.590536659 7.445657128 7.329122455 7.650805171 7.38798764 7.579642077 7.51020799 56963575 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 8.04465456 8.074763921 8.147401117 7.898257398 7.600728457 7.662939526 8.046200581 7.811151213 7.871375182 7.967630657 7.600498778 222102561 nmoA Organic Remediation Aromatics Nitoaromatics Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 7.658512363 7.661666562 8.074251342 7.520094664 7.339552267 7.734852274 7.674761155 7.682242261 121715614 BADH Organic Remediation Aromatics Other aromatics Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7.77697479 7.550616705 7.606995185 7.172308954 7.491385174 7.75882491 7.545424591 7.268303137 7.203017761 184200841 TerC Metal Resistance Tellurium Kocuria rhizophila DC2201 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 7.436785886 7.496946982 7.390393809 7.686878248 7.271276196 7.366922993 7.594919462 153892208 ureC Nitrogen Ammonification Opitutaceae bacterium TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 7.115125194 7.947656264 7.823235253 8.238840326 7.984728576 8.119449089 8.221445451 8.323741357 247543746 cap virulence capsule Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.417956098 7.266274195 7.653264623 7.529612266 7.200875448 7.820971933 7.40354237 7.175723979 7.417593511 183581560 pcc Carbon cycling Carbon fixation Kocuria rhizophila DC2201 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 8.450034371 8.714560457 7.622434741 7.819077533 8.084247623 8.097869496 7.281910457 7.930471413 7.654640684 7.778208792 145012565 mnp Carbon cycling Carbon degradation Lignin Magnaporthe grisea 70-15 8.32817539 8.373188988 7.828688801 7.726306745 7.862043592 7.810010455 7.652244164 8.232484739 7.726522757 7.62758491 7.677832294 156532228 TerZ Metal Resistance Tellurium Enterobacter sakazakii ATCC BAA-894 7.159378938 7.250704848 6.988236936 7.388656621 6.93662304 7.228890128 83726550 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Ralstonia solanacearum UW551 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 8.193683403 8.463094608 7.785007118 7.743500023 8.0796905 8.185256749 7.533928314 7.916500669 7.674972986 7.606986869 260409407 sigma_70 Stress Sigma factors Acinetobacter baumannii ATCC 19606 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 7.662817225 7.76218929 7.776364121 7.006500818 7.469069929 7.732959248 7.537115834 7.553678536 7.526010185 18958203 ppk Phosphorus Phosphorus utilization Haloferax volcanii superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax; 7.60429612 7.294866702 7.460324581 6.931620786 7.223131174 7.806912289 7.434982004 7.597094185 6.989425366 28868949 atzA Organic Remediation Herbicides related compound Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 7.834085621 7.635855986 7.970025782 7.805916298 7.904093188 8.09603636 8.027772477 27375254 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.22508199 8.050131082 9.295840345 8.705867415 8.809158941 8.154559325 8.902460598 8.356989354 8.544618944 8.720333993 8.349083533 158108494 sigma_70 Stress Sigma factors Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.600552998 8.62846729 8.429548697 8.399284165 8.601243512 8.561894665 8.696278232 8.593517067 8.217670503 89512920 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.145738014 7.148492544 7.03170509 6.816338011 6.779042758 7.394348641 6.998045554 6.937040936 6.971526191 193213220 hrcA Stress Heat shock Chlorobaculum parvum NCIB 8327 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum parvum; 8.059906007 8.315407899 7.675056127 7.998442105 7.496542788 7.887175051 7.749927501 8.106163083 7.995068059 7.850503233 7.52459665 77978206 tfdA Organic Remediation Aromatics Chlorinated aromatics Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 7.634458551 7.642181331 7.459188148 7.204179658 7.6842982 7.754442132 7.423659358 7.024260406 118570307 alkB Organic Remediation Other Hydrocarbons Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 7.732027027 7.439664096 7.360511968 7.782090596 7.377080895 7.713514744 7.370837164 7.064449655 125496936 CopA Metal Resistance Copper Streptococcus sanguinis SK36 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus sanguinis; 7.703592998 7.422183407 39995813 SMR_antibiotics Antibiotic resistance transporter Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 6.924541108 7.276401131 7.754490132 7.911769007 7.105711481 8.22426176 7.490074675 7.78919378 8.013460647 71147560 sigma_24 Stress Sigma factors Colwellia psychrerythraea 34H superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Colwelliaceae;genus:Colwellia;species:Colwellia psychrerythraea; 7.722107588 8.025766537 7.133096671 7.13777969 6.916059593 7.311733957 126470052 bphD Organic Remediation Aromatics Polycyclic aromatics Rhodococcus rhodochrous superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.510323316 8.470512354 8.653112294 8.544055364 8.424192613 8.401429858 8.319500635 8.285273327 8.517133075 8.28222386 8.24051978 220683724 mcrA Carbon cycling Methane Methane production uncultured archaeon superkingdom:Archaea; 7.805719495 7.943975122 7.511010932 7.366386512 7.237342125 7.027902267 6.935764787 7.689379883 7.51698969 7.239072977 7.254512656 183580329 fnr Stress Oxygen stress Kocuria rhizophila DC2201 7.906304259 7.659336241 7.776245994 7.760480694 7.695205303 7.939399281 7.654953232 7.439563731 7.574181977 91203786 hzo Nitrogen Anammox Candidatus Kuenenia stuttgartiensis 8.244279127 8.410616913 7.681864665 7.370839894 7.466799763 7.018690418 7.24428879 7.372208408 7.564075722 7.803408472 34017198 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 8.135889614 8.067288805 7.787337181 7.564832278 7.370051596 7.11101684 7.448535896 7.88049687 7.549107809 7.272646178 7.541897384 228847655 SMR_antibiotics Antibiotic resistance transporter Bacillus thuringiensis IBL 200 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus thuringiensis; 8.163213278 8.477746764 7.373542626 7.548218763 7.351293516 7.061547564 7.282194586 7.606580416 260636481 nrfA Nitrogen Dissimilatory N reduction Prevotella sp. oral taxon 472 str. F0295 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella sp. oral taxon 472; 7.588922747 7.412297661 260425299 sigma_70 Stress Sigma factors Citreicella sp. SE45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 8.406405262 8.508188577 8.008320538 7.813540784 7.884974543 7.851505265 7.628875607 7.731935411 7.90001424 7.928060837 126731410 phn Organic Remediation Herbicides related compound Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 9.153899305 8.740700495 9.023434725 9.246268522 8.810403797 9.459645802 9.247737613 9.00866052 9.189968691 9.367941969 8.698773969 117164580 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces ambofaciens ATCC 23877 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ambofaciens; 7.746879077 7.857937296 8.198431502 8.263564262 8.29766979 8.507469629 8.457567291 8.266181473 8.391498604 17431022 rcnA Metal Resistance "Cobalt,Nickel" Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 8.073897349 8.168577383 8.157520594 8.058142215 7.982617629 7.454885577 8.277068299 8.125946165 8.123113354 8.000841756 7.925371617 197121174 sigma_70 Stress Sigma factors Anaeromyxobacter sp. K superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 7.569961187 7.464621097 7.24136367 7.090083178 7.273405415 110667993 trzA Organic Remediation Herbicides related compound Haloquadratum walsbyi DSM 16790 7.388635429 6.907777217 7.860184365 7.3805674 7.145087922 7.574043188 117999282 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.825331136 8.356792465 7.682882324 7.519030359 7.491925259 7.48133809 7.202063356 7.691193193 7.475928136 7.455046523 229916292 pstB Stress Phosphate limitation Exiguobacterium sp. AT1b 7.768079527 8.011095753 7.904545909 7.312152396 7.528983813 7.634954491 7.892315167 7.424037446 7.71831402 7.596664088 7.403042242 113875120 phn Organic Remediation Herbicides related compound Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 7.196104383 7.290020494 7.254215908 7.579911657 40253061 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.105414547 8.081329248 7.59252999 7.685736787 8.056011714 8.143600472 7.315461407 8.363711897 7.777908273 7.648681215 7.74046458 1255498 nifH Nitrogen Nitrogen fixation unidentified bacterium superkingdom:Bacteria; 7.914424228 8.010406784 7.3264857 7.296364226 7.428312829 7.347055732 7.134193516 7.723787907 7.626026037 7.72644029 7.680333096 145594127 CadA Metal Resistance Cadmium Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 8.705281486 8.760615513 8.382666026 8.265755544 8.317399224 8.280222764 8.534901165 8.617678664 8.642890433 8.566951841 8.582860559 114227193 AceB Carbon cycling Carbon degradation others Alkalilimnicola ehrlichei MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 8.122723911 8.325262296 7.515712933 8.132443232 8.035077966 8.241698531 8.198488925 8.476084182 8.271654949 163811628 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.569100671 7.316371281 7.044542012 7.065860968 6.95454916 7.583028549 7.293316301 7.066739608 119821285 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 8.488222196 8.299905316 8.11103194 8.190633839 8.186228113 8.170181716 8.370212121 8.206326431 8.299920488 8.146781412 8.090362544 117991566 HBH Organic Remediation Aromatics BTEX and related aromatics Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.375484795 7.028449829 7.351135064 7.440102567 116634743 narG Nitrogen Denitrification uncultured bacterium 8.165784129 7.943681139 8.063090023 7.517646327 8.16294189 7.907829662 8.065419501 8.068800588 8.266890286 163665105 MFS_antibiotic Antibiotic resistance transporter Methylobacterium extorquens PA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 7.848061463 8.031507374 8.276599785 8.030499146 7.551522541 8.152738121 7.881153932 8.37735547 40217357 ZntA Metal Resistance Zinc Gordonia westfalica superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 8.303887559 8.028294008 7.863173305 8.360085379 8.259939587 7.916022505 8.014388791 8.148172767 7.935622567 118169656 glnA Stress Nitrogen limitation Mycobacterium smegmatis str. MC2 155 7.535698198 7.488979081 7.168220007 7.212071066 7.326068562 7.592331806 7.1496411 7.003831499 262185100 sigma_70 Stress Sigma factors Aeromicrobium marinum DSM 15272 8.308516005 8.435451367 8.317049484 8.208623963 8.301474432 8.034464082 8.768270677 8.427603572 8.078468098 8.337404829 115378016 ppx Phosphorus Phosphorus utilization Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 8.049789405 8.134716662 7.609084685 7.720660035 7.862442196 7.947146601 7.981262585 8.014566066 7.629987068 7.932737189 148502914 glnA Stress Nitrogen limitation Sphingomonas wittichii RW1 7.869627655 8.016758626 7.735992487 7.760524104 7.286056271 7.470161848 7.26747162 8.079021812 7.13546247 7.270824759 84499300 CopA Metal Resistance Copper Oceanicola batsensis HTCC2597 8.495484857 8.725692131 8.173563076 8.178188307 8.244100517 7.659044691 8.162693495 8.041537323 7.879468287 7.798880566 160900323 tfdA Organic Remediation Aromatics Chlorinated aromatics Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.009850995 8.141802137 7.666687051 7.866255485 7.924298132 8.097674437 7.658916649 8.123448307 8.170145647 8.080684527 7.805244484 261286292 amyA Carbon cycling Carbon degradation Starch Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.059281371 8.152586559 7.610225771 7.654430298 7.572161163 7.030581468 7.639160289 8.116639634 7.625596621 7.608402784 7.396983628 71906985 proO Organic Remediation Aromatics Other aromatics Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 8.096079715 8.313902759 8.110001285 7.891341858 7.975132351 7.432625685 8.137736156 8.050058678 7.832152275 7.879892069 7.625103346 226906221 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter; 8.356392913 8.370404014 8.255660364 8.146543146 8.450986673 8.599528907 8.435071101 8.411164532 8.272322522 24346017 ArsC Metal Resistance Arsenic Shewanella oneidensis MR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella oneidensis; 6.994342995 7.964420735 7.491949797 7.482681889 7.463594428 28556672 catechol_B Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 8.347673877 8.25054104 8.268079119 7.993113378 8.50018356 8.165762548 7.852289674 8.122305592 8.210509231 187725781 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 7.672613122 7.873333384 8.209054733 8.411373302 7.953638137 8.133121152 7.806797865 7.813361018 7.804161347 77378451 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.167000479 8.183654617 7.750459904 8.219274862 8.805284789 8.347303428 8.354687711 7.833516322 8.776818573 121701135 Catechol Organic Remediation Aromatics Other aromatics Aspergillus clavatus NRRL 1 8.296759589 8.493159551 7.660397421 7.891301535 7.724013128 7.636944758 7.554829296 7.652427297 7.485492431 8.090312491 116634749 narG Nitrogen Denitrification uncultured bacterium 8.228460514 8.238354596 8.290741732 7.879771553 7.675476324 7.988131887 8.166071314 7.945428061 8.288562362 8.003378246 7.679229377 87200825 proO Organic Remediation Aromatics Other aromatics Novosphingobium aromaticivorans DSM 12444 7.125618376 6.965196955 7.237158558 13423440 pcc Carbon cycling Carbon fixation Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 7.732504826 8.165746376 8.084430212 7.591818213 7.890526091 8.044670092 8.03942499 8.320364019 7.966556124 121583098 CopA Metal Resistance Copper Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 7.534292818 7.765200718 8.075524038 7.732405682 8.092560228 8.202145143 7.738228123 8.055316206 7.812126577 227195205 pstC Stress Phosphate limitation Lactobacillus ruminis ATCC 25644 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus ruminis; 7.485141844 7.194703494 7.11908023 6.978516418 7.062273679 7.32953809 7.031610959 83952813 CopA Metal Resistance Copper Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 7.506676864 7.940271214 8.313024226 8.712230507 8.356958717 8.288130553 8.648707023 8.571131078 8.883545064 158522679 dsrA Sulphur sulfite reductase Candidatus Desulfococcus oleovorans Hxd3 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus;species:Desulfococcus oleovorans; 7.795051362 8.124543365 7.980235153 7.642312147 7.395325152 7.203924517 7.561546425 7.573936608 7.450937035 7.237969947 152144922 CorC Metal Resistance Cobalt Beggiatoa sp. SS superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Beggiatoa; 7.092214302 7.044076493 7.038762089 220729894 pheA Organic Remediation Aromatics Other aromatics Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 7.161729732 7.540938488 7.28618502 7.238724278 7.52377935 120403007 chnB Organic Remediation Other Hydrocarbons Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.773342166 8.578470157 8.259409279 8.119930361 8.450119216 8.437551983 7.662477149 8.524868304 8.156721655 8.162479113 8.12244872 119459083 AceB Carbon cycling Carbon degradation others marine gamma proteobacterium HTCC2080 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.927804265 7.589457133 7.590471646 7.585700571 7.710191275 8.080566611 7.577101671 7.79824059 7.711901174 35210335 gyrB other category gyrB Alicyclobacillus acidiphilus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus; 7.651996073 7.770822955 7.946629051 7.281177606 7.363371123 7.994186763 89068463 pimF Organic Remediation Aromatics Aromatic carboxylic acid Oceanicola granulosus HTCC2516 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 8.349663074 8.403978172 8.359807715 8.298681101 7.996561846 8.331957104 8.634891701 8.402930118 8.430276586 8.322302057 8.44219562 6855371 pstA Stress Phosphate limitation Streptomyces coelicolor A3(2) 7.246493541 7.974118699 7.887327531 7.853971707 7.997038575 7.940880098 7.934542629 7.794616792 150014349 nifH Nitrogen Nitrogen fixation Methanococcus aeolicus Nankai-3 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanococcaceae;genus:Methanococcus;species:Methanococcus aeolicus; 8.607554884 8.556874034 8.796156566 219675737 alkB Organic Remediation Other Hydrocarbons gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.862982189 8.190500077 7.323612124 7.446829549 7.148227579 7.661889808 117618319 nrfA Nitrogen Dissimilatory N reduction Aeromonas hydrophila subsp. hydrophila ATCC 7966 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas hydrophila; 8.128797523 7.951098272 7.902368237 7.975132221 7.914626171 8.188717841 7.888898043 7.881464946 7.746625123 126319479 atzB Organic Remediation Herbicides related compound Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.916884133 8.235614333 7.517103448 7.435684103 7.757052738 7.38419059 8.171727535 7.271875419 7.674745653 7.555375742 149278018 pcc Carbon cycling Carbon fixation Pedobacter sp. BAL39 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter; 9.113529456 9.230016111 8.616097759 8.264489463 8.46030362 8.527359644 8.243677593 8.321112454 8.24402559 8.63374568 159045313 atzB Organic Remediation Herbicides related compound Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 8.094495426 8.127927485 7.988850878 8.187424184 7.956344724 8.56402361 7.988592441 7.994886883 7.952012743 90325993 pilin virulence pilin Photobacterium profundum 3TCK superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 7.995667406 8.044972141 7.164179605 6.808287031 7.023340841 94554288 ArsC Metal Resistance Arsenic Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 7.806195159 7.745848445 7.682663673 7.708912583 7.776096777 8.152244089 7.773025387 7.996704783 8.017818612 118579269 CadA Metal Resistance Cadmium Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 7.913217774 7.908754279 7.703851888 7.429334437 8.127291183 7.820489868 7.840901943 7.652180825 7.912923518 119391491 narG Nitrogen Denitrification uncultured bacterium 7.534721768 7.039340062 7.154037481 7.191681781 168701843 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Gemmata obscuriglobus UQM 2246 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata;species:Gemmata obscuriglobus; 7.96450143 7.780839256 7.686874942 7.906502278 7.752372991 7.967606485 7.77486677 7.700742222 7.771889933 126035129 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 8.086833574 8.333066715 7.144181824 6.955293903 7.158859123 7.093026216 7.159066135 7.330327822 117959704 phenol_oxidase Carbon cycling Carbon degradation Lignin Ganoderma fornicatum superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Ganodermataceae;genus:Ganoderma; 7.993821839 8.065670438 7.491174701 7.508082907 7.293032628 7.133490423 7.049045049 7.493177137 7.244836568 7.015797357 6.99945277 74318521 glnA Stress Nitrogen limitation Thiobacillus denitrificans ATCC 25259 7.606417589 7.549451869 7.641804568 7.617836376 7.138588735 7.378189851 7.297050697 209523316 cap virulence capsule Arthrospira maxima CS-328 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira maxima; 7.637913655 7.188425203 7.315141528 6.94583925 6.799775895 7.636402821 7.167708976 7.377053001 154498800 hrcA Stress Heat shock Bacteroides capillosus ATCC 29799 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides capillosus; 7.592230136 7.538785538 7.248778124 7.101657952 7.339041433 7.708433665 7.479828889 7.330442113 170174611 pstB Stress Phosphate limitation Candidatus Korarchaeum cryptofilum OPF8 8.074975636 8.392596758 7.667360991 7.756534602 7.718633068 7.635274016 8.226431666 7.716845632 7.244617621 7.640203225 87281016 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 6.948936429 7.232183153 7.190885102 7.4732729 73539816 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.269766857 8.259703574 7.896849371 8.273228018 8.083185228 7.989287541 8.186206903 7.700118503 116250432 nitA Organic Remediation Aromatics Other aromatics Rhizobium leguminosarum bv. viciae 3841 7.998582724 8.280601052 7.554931664 7.651698852 7.815654275 7.99692063 7.618819543 8.217966395 7.776529882 7.577081546 7.716039162 40804944 phn Organic Remediation Herbicides related compound Pseudomonas stutzeri superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.856218377 8.153106987 8.200725436 8.527731447 8.198453299 8.540746761 8.360197915 8.557786605 7.999002959 280957102 cytochrome Energy process Energy process Desulfovibrio aespoeensis Aspo-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio aespoeensis; 8.390021968 8.3466942 8.361472506 7.749869673 8.261582806 8.152472607 8.189362788 8.204617338 7.567736457 56798377 catechol_B Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 7.729263686 7.650790069 7.250793143 7.018734981 8.028043651 7.389607577 7.772523259 77808421 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Shewanella putrefaciens CN-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella putrefaciens; 8.207693914 8.114577473 7.730369482 8.134516242 7.89560434 7.879651891 7.903146906 7.628315906 7.585860896 262308558 vanA Carbon cycling Carbon degradation Others Acinetobacter lwoffii SH145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter lwoffii; 7.431037939 6.917866349 7.246094407 6.773120465 6.761696704 7.020222492 7.279685612 218710796 oxyR Stress Oxygen stress Vibrio splendidus LGP32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 7.460950427 7.604254288 7.611004864 7.812787058 7.478442599 7.494729297 7.564866166 7.571114581 260838147 pstC Stress Phosphate limitation Vibrio sp. RC341 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.428952302 8.327108579 7.701518479 7.786451274 8.215616929 8.207941377 7.663853113 8.48428254 7.89837557 7.845392953 8.008643418 222112678 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Diaphorobacter sp. TPSY superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax ebreus; 8.057786976 8.195962933 8.265701854 7.949398942 8.518850353 8.297249393 8.264642065 8.276196317 8.25810456 163857837 pstC Stress Phosphate limitation Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 7.843903642 7.550873671 7.243265162 7.628882954 7.700667502 7.886480378 7.254119189 7.150208625 7.227375838 218171892 glnA Stress Nitrogen limitation Cyanothece sp. PCC 7424 7.748012201 7.163095308 119822199 ArsC Metal Resistance Arsenic Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 8.262297378 8.159059142 7.908891785 8.094151373 8.217246667 8.328112446 7.638863939 7.646270435 7.483008501 194013613 SMR_antibiotics Antibiotic resistance transporter Bacillus pumilus ATCC 7061 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pumilus; 7.408675744 7.302099109 7.366184117 258525580 sigma_32 Stress Sigma factors Desulfurivibrio alkaliphilus AHT2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfurivibrio;species:Desulfurivibrio alkaliphilus; 8.602307012 8.616165869 8.146069174 8.027056019 7.957962441 7.734359489 7.70873643 7.974883623 7.745590283 7.921345215 7.812323897 76559262 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Natronomonas pharaonis DSM 2160 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natronomonas;species:Natronomonas pharaonis; 8.195763495 8.264990907 7.794836196 7.743907723 7.820227634 7.869389882 7.664580101 7.815851672 7.952406263 8.066826493 8.094377128 229785569 desK Stress Cold shock Bifidobacterium angulatum DSM 20098 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium angulatum; 7.497772528 7.609929585 7.351624253 7.192924206 7.220089468 7.873917554 7.537141242 7.336690732 146270428 CopA Metal Resistance Copper Dehalococcoides sp. BAV1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.853606387 8.102757767 7.081452263 7.287328278 6.923971443 7.32686081 268318783 nplT Carbon cycling Carbon degradation Starch Lactobacillus johnsonii FI9785 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus johnsonii; 7.919184408 8.169430436 7.455692105 7.346272152 7.372413932 7.051533744 6.967970873 7.519819115 7.372328182 7.205209681 7.538601348 119696264 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium sp. KMS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.104119188 7.294206887 7.642476168 7.705148162 7.263011628 7.063650263 28854628 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 7.350615393 7.196177748 6.767151357 7.164868691 7.577062407 7.244551588 7.018729242 7.287196186 262311564 phoB Stress Phosphate limitation Acinetobacter junii SH205 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter junii; 8.927305069 8.617542419 8.185209937 170027517 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 8.01479883 8.199981814 7.464292478 7.509116808 7.160542067 7.428890474 7.242857173 7.327636343 7.443320498 193498894 amoA Nitrogen Nitrification superkingdom:Archaea; 6.949003889 7.26022885 7.158405228 7.507198601 251782730 pstB Stress Phosphate limitation Streptococcus dysgalactiae subsp. equisimilis GGS_124 8.026046977 8.36376044 7.664106144 7.503072471 7.498712376 7.379160775 7.18496063 7.325965718 7.587047539 91795546 proO Organic Remediation Aromatics Other aromatics Chromohalobacter salexigens DSM 3043 7.556525135 7.759376793 8.068309444 8.179546673 7.652588994 8.224462501 7.811813347 7.728883887 7.675768502 163801044 iro virulence Vibrio sp. AND4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.501259057 7.333896105 7.59584384 7.119134635 6.905362045 7.59112866 7.209911348 7.505678868 68510508 mdlD Organic Remediation Aromatics Other aromatics Rhodococcus aetherivorans 7.974350649 8.045937323 7.342994406 7.57807164 7.569731935 7.214963745 7.436315973 7.512438575 256361016 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 8.048159895 8.232603431 7.570430883 7.385774865 7.446008349 7.982135948 7.558474454 8.361882592 7.795190917 7.520086625 7.865621797 158508938 gyrB other category gyrB Desulfococcus oleovorans Hxd3 7.519219356 7.804897069 7.967742027 7.308028565 7.495158822 8.014525493 7.607669925 7.492098378 7.487892094 85818514 alkB Organic Remediation Other Hydrocarbons Cellulophaga sp. MED134 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Dokdonia;species:Dokdonia donghaensis; 7.133067736 7.036349009 7.53472123 6.942364607 6.992649031 7.719617986 7.108916548 6.881960423 89335033 PceA Organic Remediation Others Desulfitobacterium hafniense Y51 8.357033548 8.643524405 7.566890545 7.562258753 7.533067776 7.821439827 7.356391791 7.505469458 218169827 ahpC Stress Oxygen stress Cyanothece sp. PCC 7424 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.330166116 7.327626891 7.285506144 6.738326239 7.68320933 7.11619748 7.207924755 7.221516063 257051220 gyrB other category gyrB Halorhabdus utahensis DSM 12940 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus utahensis; 7.916810225 7.981557584 7.381089863 7.59747683 7.7950408 7.875388954 7.140645314 7.796186594 7.575013038 7.696382803 7.663582803 110822150 ArsC Metal Resistance Arsenic Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7.761515078 7.56695932 7.580886402 7.451478139 8.05602179 7.535908644 7.708578092 7.773845683 7.769268766 iegAssA32 AssA Carbon cycling Carbon degradation Others 7.831714542 8.097098282 7.308880555 7.114536061 6.8521766 7.492649852 6.950471129 6.952457809 7.358524895 29832745 pimF Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 7.540532021 7.512320184 7.732557292 7.360764865 7.592872831 7.950443082 7.56769295 7.49639382 7.570901932 195541927 fnr Stress Oxygen stress uncultured bacterium 1062 8.033242222 8.404892358 7.766042105 7.823340488 7.641149217 7.575028371 7.740502786 7.888847427 7.847836667 7.634446032 7.868973701 34017082 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7.957027793 8.306455065 7.36233916 7.451255285 7.29025893 7.118907999 7.259018399 7.592904348 7.297593393 7.286394116 7.564384908 116326465 Host_recognition_T4_type Bacteria phage HOST RECOGNITION/STRUCTURAL Enterobacteria phage RB32 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 8.247319218 8.3253612 7.604592156 7.751737304 7.973926806 7.465426617 7.778051847 8.083801464 8.101581091 7.818270206 7.828407356 206679394 dehH Organic Remediation Chlorinated solvents Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.368796729 7.235251075 7.043509819 6.959343901 6.95114031 7.317088169 7.039958536 139003446 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.069361028 8.385347642 7.54966879 7.517155448 8.022085027 7.982040338 7.80286197 7.690338195 7.864179646 7.899208116 119225916 Catechol Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 8.69568006 8.678523128 8.467362399 8.277414661 8.413918245 8.357696496 8.339627399 8.183973581 8.092945646 148510974 iro virulence Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.493419479 7.489748338 7.79006257 7.545038575 7.702691736 8.044939152 8.073547718 8.086493509 7.874274415 218283333 tutFDG Organic Remediation Aromatics BTEX and related aromatics Eubacterium biforme DSM 3989 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichi;order:Erysipelotrichales;family:Erysipelotrichaceae;species:Eubacterium biforme; 8.446697642 8.747321833 7.959027523 8.262987285 8.038908997 8.063778559 8.640667279 8.368497577 8.70335917 8.700323928 8.687425854 189334108 katE Stress Oxygen stress Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 7.458857115 7.260628328 7.55369685 7.692608658 7.127202733 7.420532084 7.389758753 7.431596841 146192094 Catechol Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. ORS278 7.980794671 8.054032072 8.174500209 8.221269825 8.044992096 8.174099115 8.162079165 8.04919414 8.171634751 8.042842603 7.533291567 227237879 pstB Stress Phosphate limitation Mobiluncus curtisii ATCC 43063 8.329578309 8.148670771 7.495463018 7.796814313 8.383778236 8.422321624 8.110912554 8.474935031 8.310319145 8.061154624 8.401790194 91684634 CODH Carbon cycling Carbon fixation Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.081922572 7.908854845 8.020596044 8.450617513 8.12964763 8.513902542 8.004991865 8.487473384 8.440808021 54024955 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 8.148682874 8.137051723 8.134905875 7.363281932 8.451867287 7.926155802 7.972934434 7.968281994 8.238747984 115522265 ChrA Metal Resistance Chromium Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.996768919 8.347692892 8.071240056 8.136484547 8.050321856 8.13816915 7.990107298 7.732996951 7.871109998 198262243 alkB Organic Remediation Other Hydrocarbons gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.009385193 8.447181086 8.485453226 7.471173079 7.508817484 7.37566205 7.308692634 7.93828612 7.493741742 7.328630213 7.435963077 84501186 hrcA Stress Heat shock Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 8.442850706 8.545912786 8.249078502 8.614987678 8.5747087 8.274027261 8.564770237 8.456880796 8.133169479 67525473 atzA Organic Remediation Herbicides related compound Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.890036969 8.266020113 7.249441769 7.041983552 156446963 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.602003803 7.771886873 8.050149925 7.961023149 7.561294638 8.029603196 7.483926227 7.620616387 7.310815139 189197501 ureC Nitrogen Ammonification Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7.011186052 6.573569396 166028276 Al Metal Resistance Aluminum Dorea formicigenerans ATCC 27755 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Dorea;species:Dorea formicigenerans; 6.837553622 6.834389946 167566213 type_III_secretion virulence secretion Burkholderia oklahomensis EO147 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia oklahomensis; 7.973853352 7.745230462 7.977320726 8.167802378 7.87201747 8.023586491 7.76068737 7.729001359 7.464660285 124294907 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 8.157168955 8.234432963 7.845398032 7.605837392 7.484893091 7.360035504 7.753424843 7.214621059 7.059729714 7.452695066 213926036 atzB Organic Remediation Herbicides related compound Pseudomonas syringae pv. tomato T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 7.446676201 7.529276042 7.838120703 7.329391597 7.40669684 7.463905635 7.584562614 7.562520283 283798841 sigma_24 Stress Sigma factors Clostridium sp. M62/1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 7.202948931 7.184179875 7.442966921 7.165269062 116609257 AceB Carbon cycling Carbon degradation others Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8.186524504 8.139432166 8.081531961 8.25309144 8.363454962 8.201025028 8.545251677 8.36391682 8.216234508 209518768 cap virulence capsule Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.170837092 8.220379537 7.556825748 7.444593677 109290282 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.896435529 7.605540582 8.05733485 8.199998776 7.689277432 7.89901968 7.733355762 7.512269467 7.704711847 227858915 srt virulence surface protein Finegoldia magna ATCC 53516 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Finegoldia;species:Finegoldia magna; 8.113560978 8.223266934 8.239085344 7.617388216 7.474648461 7.32593198 7.270434484 8.058886603 7.842891528 7.966411634 7.181043016 163783480 fnr Stress Oxygen stress Hydrogenivirga sp. 128-5-R1-1 8.219474103 8.495986346 7.844695496 7.419875523 118569138 glnA Stress Nitrogen limitation Mycobacterium ulcerans Agy99 7.686885867 7.927409722 7.662886325 7.814870852 7.900339997 7.968808232 7.979813731 7.762039519 7.598204844 119373686 catB Organic Remediation Aromatics BTEX and related aromatics Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.437893603 8.422594486 7.691534598 7.903392681 8.442355035 8.692311387 8.095007229 8.489904332 7.777394094 7.685354366 8.124269667 17133032 mhpC Organic Remediation Aromatics Aromatic carboxylic acid Nostoc sp. PCC 7120 7.894593348 8.073556194 7.110626618 6.990480902 7.18062064 6.972406216 7.470603259 6.861218601 7.228819712 37924921 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.100167613 7.786799315 7.54350599 7.729467783 7.973210794 7.852626187 8.002738369 8.221923912 7.509030087 121583120 CopA Metal Resistance Copper Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 7.874675998 8.109278943 7.505079998 7.106550507 7.336617338 7.433394796 7.16056712 8.05385779 7.341999585 7.243496833 7.351681675 186460626 CopA Metal Resistance Copper bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 8.725190509 8.669304448 8.308995365 8.215854387 8.128531155 8.043107614 7.93044771 8.306756772 8.200940617 8.434936444 8.198234971 163261564 pstA Stress Phosphate limitation Bordetella petrii 7.560533329 7.401088763 7.39285005 7.159739702 7.368251964 7.470775333 7.306317021 7.724452023 89346155 gyrB other category gyrB Rhodoferax ferrireducens T118 7.21643018 7.842695232 7.687897311 7.531883863 7.072083283 8.020052268 7.088163666 7.371816311 91715273 fnr Stress Oxygen stress Shewanella denitrificans OS217 8.114380072 7.974158921 7.259305836 7.604401089 8.048889688 8.05130876 7.861223946 8.04099145 7.978874856 8.203532181 283950352 sigma_70 Stress Sigma factors Conexibacter woesei DSM 14684 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Conexibacteraceae;genus:Conexibacter;species:Conexibacter woesei; 7.752369309 7.731623854 7.621037285 7.25687529 7.860878736 7.78325446 7.634875729 7.460952137 7.496234518 212692219 ara Carbon cycling Carbon degradation Hemicellulose Bacteroides dorei DSM 17855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides dorei; 7.167173396 7.269110814 7.471049699 7.551952368 6.876397999 7.799675779 7.026526961 7.152075308 3228364 Van Antibiotic resistance other Streptomyces toyocaensis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.062602849 8.075867532 7.687110835 7.747734884 8.897189699 8.651044381 8.549261959 9.035720117 8.796709926 9.109361797 198263931 bphC Organic Remediation Aromatics Polycyclic aromatics Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 7.457883817 7.036463835 7.222713191 7.406571497 7.516108237 7.159144017 7.279646217 256774815 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces hygroscopicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces hygroscopicus; 8.124231656 7.893620473 7.774886943 7.709374535 7.458241673 7.810147528 7.513417709 7.707886318 56477911 sigma_70 Stress Sigma factors Aromatoleum aromaticum EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 7.548156211 7.528370168 7.705088257 7.515819129 7.626355307 7.805321441 7.342994695 7.278799339 7.432422437 118054333 tftH Organic Remediation Aromatics Chlorinated aromatics Comamonas testosteroni KF-1 7.379503295 7.588826584 8.150292668 8.199088088 8.045546524 7.875282802 7.831849703 7.833917429 7.877605101 28853960 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 8.002383064 8.150577014 7.759355772 7.918885542 7.718947357 7.527670763 7.891697034 8.017030548 7.88249947 7.626029087 7.992838711 261418948 cda Carbon cycling Carbon degradation Starch Geobacillus sp. Y412MC61 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.230905333 6.751563333 7.400901193 7.176169291 6.754659989 7.006062711 7.54240747 23491548 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. TH2 7.601628779 8.028014747 8.135510599 8.461440852 7.116717816 8.441752982 7.770901703 7.801805577 7.96335698 22778954 ChrA Metal Resistance Chromium Oceanobacillus iheyensis HTE831 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Oceanobacillus;species:Oceanobacillus iheyensis; 8.324978644 8.328250466 8.042060198 8.108755178 7.796750657 8.318016671 186463483 CopA Metal Resistance Copper Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 8.112498194 7.939957312 7.116614054 7.001656946 7.349081371 7.127429946 6.838327827 7.527288018 7.116477989 7.128978143 7.350567056 119372937 gyrB other category gyrB Paracoccus denitrificans PD1222 8.312868555 8.157385891 7.688748476 8.022894107 7.947937575 8.098926543 7.756412583 7.928154038 7.754989467 8.082071173 7.710356937 108464563 ppx Phosphorus Phosphorus utilization Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 8.124997655 8.289010315 7.761616185 7.76847008 7.697320232 7.760091841 7.59748179 7.703106366 7.66477581 7.597328706 7.252664919 169886102 nirA Nitrogen Assimilatory N reduction Synechococcus sp. PCC 7002 7.985002563 8.329002329 7.011479608 7.079710464 7.23615365 7.487703911 172052606 amoA Nitrogen Nitrification superkingdom:Archaea; 8.290688225 8.306284894 8.319133547 7.520875073 8.40438136 7.951945031 8.01107789 8.204395258 8.299286261 206590934 dehH Organic Remediation Chlorinated solvents Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 8.390519059 8.355920464 8.40183731 8.055644239 8.01086636 7.932345695 8.376689968 8.3453948 8.241756342 8.072820416 8.186882022 226097257 fnr Stress Oxygen stress Brevibacillus brevis NBRC 100599 8.021476369 8.220501613 7.7408532 7.735157743 7.453078942 7.559087129 7.511763402 8.011925952 7.502818121 7.759925343 7.560815506 110823187 chnB Organic Remediation Other Hydrocarbons Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7.249878903 7.334045002 91693670 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.106303939 6.873020688 7.817659127 7.023464633 7.046539395 113943491 CopA Metal Resistance Copper Salinispora tropica CNB-440 8.032732049 8.034901017 7.612400609 8.026869439 7.856708152 8.03529183 8.077601966 8.24070391 7.50207156 145246542 BpH Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.118579485 7.347921222 7.311164585 7.162599449 7.019817469 170293847 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Aquabacterium sp. PL1F5 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Aquabacterium; 8.064113336 8.5470701 7.925601814 7.771582784 7.776617562 7.114779346 7.560127195 7.429696216 7.818229117 39996860 cytochrome Energy process Energy process Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 7.497863823 7.351802518 7.429600201 7.738578403 7.641022206 7.582018894 7.472689034 7.728317 254510297 B_lactamase_C Antibiotic resistance Beta-lactamases Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 8.547208703 8.300899226 7.81171967 8.157005579 8.572834879 8.675792292 8.385805329 8.385611851 8.181976774 8.582765042 8.69350218 226089780 fnr Stress Oxygen stress Gemmatimonas aurantiaca T-27 8.40151718 8.363539202 8.20600191 7.757835837 7.818372776 7.657202538 8.114713333 7.952256056 8.012041904 7.958937791 8.001898193 116694319 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.23442185 8.019354154 7.82102752 7.912527238 7.948272364 7.880594689 7.894513159 8.071425107 8.078198896 7.752800988 119375122 type_III_secretion virulence secretion Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.066385439 8.186362881 7.469029655 7.63347078 7.435581362 7.449242104 7.642584727 8.049767095 8.060356418 7.437240301 8.27863919 146282835 endoglucanase Carbon cycling Carbon degradation Cellulose Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 6.964189091 7.095034798 7.206821528 7.565017877 6.804829027 6.998805695 225194062 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.867870146 8.012941442 8.047699658 7.92118211 8.055459636 8.093928018 8.485446615 8.301422226 8.306593383 8.094380309 8.294764475 183602920 xylA Carbon cycling Carbon degradation Hemicellulose Bifidobacterium animalis subsp. lactis HN019 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 7.40315632 7.427979836 7.70750287 7.731613585 6.870695772 8.066059827 7.254279323 7.35700967 7.411890843 166516 pectinase Carbon cycling Carbon degradation Pectin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 8.226989456 8.476553243 8.415249755 8.215843783 7.824356824 8.242700297 8.130196664 8.41335548 7.764027813 7.865162531 7.937119322 119486793 nifH Nitrogen Nitrogen fixation Lyngbya sp. PCC 8106 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Lyngbya; 8.132321746 8.305680733 7.73189705 8.075436636 8.367265983 8.385540083 8.352781224 8.348251576 7.770524652 8.159966297 8.474670968 226226672 SMR_antibiotics Antibiotic resistance transporter Gemmatimonas aurantiaca T-27 superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 6.975254923 7.495612602 212560202 pstS Stress Phosphate limitation Anoxybacillus flavithermus WK1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Anoxybacillus;species:Anoxybacillus flavithermus; 7.283628653 7.188687631 7.17652718 145011716 ara_fungi Carbon cycling Carbon degradation Hemicellulose Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 8.073478084 8.062153643 7.816178696 7.892687646 8.356200808 8.268195816 8.243224082 7.976183628 7.907371342 116619551 ahpC Stress Oxygen stress Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 7.999342076 7.815120377 7.792679998 7.408108404 7.586230452 7.713325441 7.609077192 7.730883913 7.448785607 71916872 pstC Stress Phosphate limitation Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 8.126536702 8.134438471 7.825578265 8.228099028 8.100017275 7.762080748 8.35863164 8.140958162 8.041192712 8.111844751 190685514 amyA Carbon cycling Carbon degradation Starch Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 8.09013493 7.811899728 7.813239805 7.706051072 8.066188344 7.941790047 7.93950105 7.783226507 8.048709192 118168061 MSAD Organic Remediation Others Mycobacterium avium 104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 8.213358633 8.365105982 7.897940679 7.901429661 8.059018751 7.921515706 7.943820785 8.213390856 8.260969674 8.190960884 8.185851277 134142929 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 8.111211247 8.505070526 7.632465783 7.833595102 8.198793792 8.385459732 7.20343291 8.847749127 7.741038641 7.817710502 7.858292898 16330430 pstC Stress Phosphate limitation Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 8.307349913 8.554798558 7.89805822 7.661115276 7.753930863 7.691029558 7.466203087 7.640141791 7.330636696 7.384654254 7.852393817 74057981 ferredoxin_oxidoreductase Bioleaching Electron transport Thiobacillus denitrificans ATCC 25259 7.898602381 8.150374674 7.213248787 7.242634145 7.458575892 7.189291724 6.943890751 7.454779777 7.233015309 7.440850558 94471197 narG Nitrogen Denitrification uncultured bacterium 7.703117199 7.660975671 7.672807861 7.592298792 8.092161695 7.870299486 7.973498934 7.903488352 7.935978055 224610255 sigma_32 Stress Sigma factors Thioalkalivibrio sp. K90mix superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 7.715576869 7.990215193 7.42251955 8.280983225 8.069242028 7.807459722 7.990191206 111116450 mdlD Organic Remediation Aromatics Other aromatics Pseudomonas putida 7.330498151 7.379714885 7.725234821 7.801127809 7.64976361 7.995117461 7.556514864 7.399873237 7.669726215 157285702 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.99251028 7.864929113 7.818213259 7.556465934 7.971585942 7.768835266 7.684990816 7.777456582 7.985435285 221725734 MFS_antibiotic Antibiotic resistance transporter Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.579647966 7.69522916 7.684313075 7.648999726 7.273702047 8.231701944 7.53345915 7.63403478 115422029 pstB Stress Phosphate limitation Bordetella avium 197N 7.579680199 7.45627052 8.072217009 8.034554809 7.722608552 8.011799507 7.558070585 7.658571267 7.976304345 91688336 bclA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.442549154 7.211487222 7.371282171 7.499122227 7.4612984 7.741349574 7.556016581 7.521581322 8.194488764 47680327 rubisco Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.650266135 7.512224197 7.790239272 7.455648157 7.407583113 7.835145113 7.399624381 7.371921238 7.563979629 148845765 sigma_24 Stress Sigma factors Planctomyces maris DSM 8797 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces maris; 8.120259459 8.122956997 7.799972068 7.684073402 8.131179903 8.003990672 7.538522846 7.898032809 124874701 nagG Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia cenocepacia PC184 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 7.901138301 7.837172368 7.863319218 7.757828816 7.930174941 7.930356374 7.740100963 7.918052903 7.976607286 126355270 ureC Nitrogen Ammonification Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.954374174 8.369715085 7.437813521 7.595744157 7.868569902 8.043913953 7.469962437 7.967056774 7.474074252 7.526052057 7.631465684 37548698 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.81413188 7.414912183 7.905005092 8.300871088 7.774046327 8.538037589 7.900161432 8.131501191 8.184312056 229590264 cytochrome Energy process Energy process Pseudomonas fluorescens SBW25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.210323588 8.106882013 7.301988815 7.631454739 7.476013301 7.410310606 125716454 phenol_oxidase Carbon cycling Carbon degradation Lignin Ensifer adhaerens superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Ensifer; 8.148922442 8.133070688 7.404313216 7.557986935 7.295609019 7.326151903 7.550288461 7.747603043 7.471575671 7.038351465 7.47501337 238496875 grpE Stress Heat shock Aspergillus flavus NRRL3357 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus flavus; 7.786995925 8.123793471 8.199122843 7.717839585 8.52956257 7.657849937 7.48360189 99035845 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.018861282 7.506675106 7.318535479 7.439579257 7.856098513 219863545 sigma_70 Stress Sigma factors Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.346065008 7.726218054 7.719750318 7.25297547 7.678363777 7.30218163 7.512005002 7.552175087 81296315 Xamo Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 8.482118141 8.384337525 8.321060212 8.349160887 8.906753227 8.468999007 8.695427213 8.395969376 8.505216422 55540860 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7.27023303 7.170821978 7.366180533 6.92745901 6.795497414 7.492863661 13676306 cellobiase Carbon cycling Carbon degradation Cellulose Actinomyces naeslundii superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces; 8.276698431 8.335928675 8.714862166 8.766055742 8.992538039 9.183330431 8.930700171 8.530192578 8.557111051 8.62813628 8.343794383 221197030 bphF1 Organic Remediation Aromatics Polycyclic aromatics Burkholderia multivorans CGD2M 8.455827261 8.583755622 8.339834399 7.888837972 8.038370839 8.211900176 8.161558878 8.383824288 7.85552986 7.749332449 8.022382716 190687208 norB Nitrogen Denitrification Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 7.914072344 8.099982127 7.398535241 7.402061318 7.363556419 7.10454755 6.953324259 7.781476061 7.355450531 7.320990088 7.20012677 149733872 endochitinase Carbon cycling Carbon degradation Chitin Eubacterium ventriosum ATCC 27560 7.912490301 8.032452811 7.309859213 6.86897834 7.278758197 7.041187564 7.569693501 7.069198783 7.001517528 146402865 glycosyl_transferase_EPS Bioleaching EPS Acidiphilium cryptum JF-5 8.236202793 8.275716401 7.966013003 8.080425739 7.89420934 7.813134343 8.156751755 8.216215147 457423 exoglucanase Carbon cycling Carbon degradation Cellulose Hypocrea koningii superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 6.825277842 6.625587595 226364401 clpC Stress Protein stress Rhodococcus opacus B4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 8.541567071 8.305538026 8.308307689 7.99602541 7.800834187 8.108115422 7.825284148 8.400244655 7.841791868 7.972518802 7.722319849 164603813 CadA Metal Resistance Cadmium Clostridium bartlettii DSM 16795 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bartlettii; 8.097046968 8.19019124 7.465930573 7.631685779 7.569296359 7.212237577 7.292976333 7.740614221 7.520275477 7.302912816 7.623776631 190149368 nrfA Nitrogen Dissimilatory N reduction Actinobacillus pleuropneumoniae serovar 7 str. AP76 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus pleuropneumoniae; 8.138113041 8.188187161 7.284432966 7.407399024 7.610681048 7.013297563 183600981 TerD Metal Resistance Tellurium Providencia stuartii ATCC 25827 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia stuartii; 8.690829491 8.721578493 8.117420466 7.913045905 7.984834144 7.957131789 7.857217166 7.8084891 8.069458307 8.209411955 8.15376782 111222753 CDH Carbon cycling Carbon degradation Cellulose Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 8.659471233 9.202678994 8.761375169 8.732091841 8.449450803 8.788475973 8.853618553 157911273 tftH Organic Remediation Aromatics Chlorinated aromatics Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 8.466489112 8.422449378 8.485727642 8.409292066 8.640962039 8.345646393 8.808286428 8.643974174 8.66890666 8.140812119 23013266 pnbA Organic Remediation Aromatics Nitoaromatics Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 8.321837618 8.117358721 8.501286762 8.213750093 7.733633009 8.447756308 8.1323578 8.215511912 7.885470842 7.764078354 8.095125872 53756827 TehB Metal Resistance Tellurium Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 7.461040231 7.445080578 7.494524147 7.505848362 7.159488816 7.85347878 7.150632261 7.304178588 7.405576313 261378020 grpE Stress Heat shock Neisseria cinerea ATCC 14685 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria cinerea; 7.608503383 7.233952826 7.500576177 7.318487614 7.354016153 223690086 pstC Stress Phosphate limitation Desulfobacterium autotrophicum HRM2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium;species:Desulfobacterium autotrophicum; 7.166155654 7.273568408 83590442 narI Stress Oxygen limitation Moorella thermoacetica ATCC 39073 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Moorella;species:Moorella thermoacetica; 8.23922436 8.26181176 7.810064399 7.914143118 7.824918192 7.659696299 8.045140431 7.823469922 8.043589088 7.775818579 7.769328347 255115520 pstC Stress Phosphate limitation Thermoanaerobacter italicus Ab9 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Thermoanaerobacter;species:Thermoanaerobacter italicus; 7.483047701 7.411657373 6.986486031 7.488446271 7.915795948 7.532189166 7.396108073 7.525517892 75676949 AceB Carbon cycling Carbon degradation others Nitrobacter winogradskyi Nb-255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 8.339344261 8.239988605 7.721741508 7.70776182 7.608176689 8.11445776 7.897396327 7.927764147 8.016266252 7.626941473 138895541 bclA Organic Remediation Aromatics Aromatic carboxylic acid Geobacillus thermodenitrificans NG80-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermodenitrificans; 7.53104836 7.442536301 7.632943791 7.445061025 7.002920237 7.421359415 7.106238488 7.556558 260216309 cydB Stress Oxygen limitation Cronobacter turicensis z3032 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter turicensis; 7.365184268 7.640626812 7.768799186 7.522927439 7.049437289 242782810 glnA Stress Nitrogen limitation Talaromyces stipitatus ATCC 10500 7.644459982 7.390964413 7.378380231 6.833734891 7.410534953 7.592081741 7.42860443 7.140743258 7.385518379 211961314 cspA Stress Cold shock Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 7.810127758 7.952267521 7.654622631 7.565860497 7.30128233 7.762107636 7.544218882 7.789960167 7.520191541 7.590611984 7.476363603 90903296 gyrB other category gyrB Pseudorhodobacter incheonensis superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudorhodobacter; 7.065015098 7.018082641 7.239736078 6.803749685 7.648064756 7.011249541 6.795309014 7.17921689 78358322 tutFDG Organic Remediation Aromatics BTEX and related aromatics Desulfovibrio desulfuricans G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 7.995234802 8.166166287 7.451487933 7.274910698 7.229099538 7.744439487 7.959714848 7.90203748 7.740800446 7.800161427 7.552481556 53804923 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 7.879150847 8.138060047 7.93268687 8.244993506 7.928132567 7.930115722 7.981992194 7.676954351 497876 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.953211055 8.298771876 7.387457611 7.332915401 7.399281769 6.86878071 7.109692626 7.786606844 7.261231125 7.098429438 7.522845646 242765885 ara_fungi Carbon cycling Carbon degradation Hemicellulose Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 8.161777925 8.062217847 7.776369704 7.749161253 7.914760408 7.847009594 7.856080129 7.950115896 7.776679787 7.8119295 7.876544973 238836974 mcrA Carbon cycling Methane Methane production uncultured euryarchaeote superkingdom:Archaea;phylum:Euryarchaeota; 6.975724326 7.2241636 6.894203533 6.783181836 7.50034227 6458429 nplT Carbon cycling Carbon degradation Starch Deinococcus radiodurans R1 8.303019257 8.453021155 8.164848864 7.78871692 7.630079595 7.92150151 7.630211698 7.842660006 7.751462289 7.563270212 7.795953461 148762383 gyrB other category gyrB Halobacillus yeomjeoni superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Halobacillus; 7.274254355 7.581725391 229323920 vdh Carbon cycling Carbon degradation Others Rhodococcus erythropolis SK121 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 8.470532499 8.538046123 8.065418339 8.023249642 7.938947174 8.256831288 7.969562313 8.301234654 7.702488402 7.719910493 7.606315842 115385653 ara_fungi Carbon cycling Carbon degradation Hemicellulose Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 8.611934651 8.258900158 8.308782548 8.417419145 8.771168827 8.657205755 8.566512679 8.825163871 8.887118136 8.830912299 8.945987603 197087974 ppx Phosphorus Phosphorus utilization Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 7.518680423 7.358378736 7.176762948 7.396113663 7.502561794 7.369477078 7.707094259 187724121 phdCI Organic Remediation Aromatics Polycyclic aromatics Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.101701601 7.969408847 7.733781186 7.825185521 8.531128981 8.062745946 8.139332251 8.284324244 8.379748111 222481421 pstA Stress Phosphate limitation Halorubrum lacusprofundi ATCC 49239 7.871974673 8.154236299 7.698327959 7.548051562 7.491972138 7.255259349 7.576448027 7.238655568 7.210805063 7.407287374 209548034 ppx Phosphorus Phosphorus utilization Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.430272595 8.349010783 8.240368112 7.937986202 8.25063218 8.3175984 8.302347872 8.5048689 108466334 linB Organic Remediation Pesticides related compound Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 7.780021264 8.007184603 8.185988365 7.978019504 7.936585791 8.027267258 8.319146766 7.977236421 227185033 obgE Stress Radiation stress Lactobacillus reuteri CF48-3A superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus reuteri; 7.25731115 7.193793597 7.332516585 6.675108605 6.985105519 7.682073828 7.191278563 7.18444368 7.359534605 219965628 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.99513761 8.245475423 7.564361862 8.314446253 8.191605674 8.505047523 8.22440919 45386141 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 7.300680703 7.123469029 7.042375781 7.165510822 7.155711427 7.319582644 50084915 iro virulence Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 8.048311131 8.296074152 7.115866381 7.165015909 7.406366138 6.821376789 6.672341513 7.626949164 88643464 dsrB Sulphur sulfite reductase uncultured prokaryote 7.567586211 7.717858561 7.216429881 7.452741782 7.407015188 256994806 obgE Stress Radiation stress Enterococcus faecalis D6 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus faecalis; 7.209001595 6.952272078 7.054231569 6.937677805 7.591967798 6.984775194 7.088844804 7.489369993 116203293 nagG Organic Remediation Aromatics Aromatic carboxylic acid Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 8.496292385 8.479067426 8.004998878 8.021508216 7.914996554 118436205 pcc Carbon cycling Carbon fixation Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 8.048710545 7.808093754 7.729962419 7.069228552 7.488308571 7.465721259 7.222501185 7.700803322 6.917464758 7.221621234 139478569 mer Metal Resistance Mercury uncultured soil bacterium superkingdom:Bacteria; 8.331418746 8.529632754 7.994873962 8.315907604 8.192654102 7.93309422 8.115268231 7.972451741 8.174925094 8.183097502 7.980275331 170767682 CopA Metal Resistance Copper Escherichia albertii TW07627 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 7.445406715 7.856932093 7.701419794 7.9019297 7.793529527 7.273323044 7.635075263 7.697158465 209884363 pimF Organic Remediation Aromatics Aromatic carboxylic acid Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 7.517351185 7.477612692 7.168316396 7.486287425 7.019153658 7.859321684 7.199846849 7.301262661 7.346406416 72121881 nagG Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 7.819261687 7.795683611 8.014089234 7.76752326 8.360405602 8.041611125 8.11608102 8.003136421 7.988054006 225020062 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium matruchotii; 7.477729207 7.752777768 7.413391672 7.176190008 7.815466459 7.761903125 7.675338139 7.495318597 7.387473031 20807045 pimF Organic Remediation Aromatics Aromatic carboxylic acid Thermoanaerobacter tengcongensis MB4 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Thermoanaerobacter;species:Thermoanaerobacter tengcongensis; 7.418746843 7.366408177 7.861388562 49061 nhh Organic Remediation Aromatics Nitoaromatics Rhodococcus rhodochrous superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7.709883384 8.356238353 7.59149548 7.77575319 8.173821603 7.946491585 8.063812127 8.248382083 8.171953577 210621732 tutFDG Organic Remediation Aromatics BTEX and related aromatics Clostridium hiranonis DSM 13275 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hiranonis; 7.94391669 8.353387365 6.826121349 7.1592094 7.153104786 7.072452879 7.274475286 7.216989623 90019653 gyrB other category gyrB Saccharophagus degradans 2-40 7.914763664 8.023322779 7.573658856 7.61031602 7.713159048 7.381564578 7.340971133 7.696750807 7.399136176 7.651120588 7.522656792 48728360 B_lactamase_C Antibiotic resistance Beta-lactamases Laribacter hongkongensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Laribacter; 7.557654804 7.811956378 7.413192165 7.15395591 146302966 ferredoxin_oxidoreductase Bioleaching Electron transport Metallosphaera sedula DSM 5348 8.0484861 7.820217101 7.579222798 7.700066243 7.734022838 8.030087473 7.615814013 7.353453424 7.882067447 120614406 obgE Stress Radiation stress Bartonella bacilliformis KC583 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella bacilliformis; 7.831265165 8.071033348 7.029578978 7.124818899 7.254700453 7.185118983 116332263 gyrB other category gyrB Leptospira borgpetersenii serovar Hardjo-bovis JB197 6.729781052 7.275011362 71556551 pbrT Metal Resistance Lead Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 8.667403223 8.602080065 8.38378605 8.336002861 8.423439462 8.6341334 8.478982971 7.995237472 126207853 MATE_antibiotic Antibiotic resistance transporter Actinobacillus pleuropneumoniae L20 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus pleuropneumoniae; 7.85028158 7.938030662 7.145704456 7.407050983 71906844 ppx Phosphorus Phosphorus utilization Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 7.561231617 7.132158968 7.299025861 7.090290221 7.390830013 163739500 mer Metal Resistance Mercury Phaeobacter gallaeciensis BS107 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 8.219264779 8.214691227 8.415075171 8.046996356 8.148777002 7.926933961 8.438972199 7.841403168 8.008984683 8.161123421 7.716379834 90418326 FTHFS Carbon cycling Acetogenesis Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 7.953993801 8.117098615 8.13348558 8.405951616 8.243473558 8.31346159 7.958992235 8.010374165 238788129 ppk Phosphorus Phosphorus utilization Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 8.497278495 8.711155203 8.003928496 7.431013804 7.966876256 7.422087675 7.465062352 7.916846344 7.733997428 7.645605652 8.175031686 ieghzo65 hzo Nitrogen Anammox 8.34548725 8.357827036 8.368827754 8.062908437 8.647696439 8.107254372 8.64471699 9.049457185 8.157940627 46580730 merP Metal Resistance Mercury Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 7.565650471 7.338521568 7.276332837 7.707350929 7.829927696 8.054749282 7.976653683 7.760654846 254688289 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 8.206634239 8.364635248 7.342446034 7.23306118 7.204694873 6.88352383 7.458325811 126716069 sigma_70 Stress Sigma factors Roseobacter sp. CCS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.085346653 8.641217031 7.967695213 7.846780516 7.807689619 7.876263608 8.333998963 7.919195879 8.136769906 7.90405547 8.029193962 120594350 bphA Organic Remediation Aromatics Polycyclic aromatics Polaromonas naphthalenivorans CJ2 8.23071258 8.207498492 7.798385409 7.55962934 8.158622053 8.226973477 7.775146634 8.591077131 7.463413659 7.723571034 7.811961848 33391389 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.888954209 7.981559435 7.763971193 7.624407558 8.355859568 7.882306964 7.945347795 7.713946119 8.01413624 126705740 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2150 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.019877848 8.284439796 7.657330613 7.374878433 7.681197518 7.392964155 7.234828163 7.679542174 7.561850126 7.621679478 7.242714334 213025338 TehB Metal Resistance Tellurium Salmonella enterica subsp. enterica serovar Typhi str. 404ty superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 7.00365453 7.158554385 7.130567767 7.875896073 7.140412566 7.501941003 113526567 bphF1 Organic Remediation Aromatics Polycyclic aromatics Ralstonia eutropha H16 7.527491522 7.400692301 7.228317272 7.490894878 7.470858711 7.754215068 118683524 bco Organic Remediation Aromatics Aromatic carboxylic acid Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 7.552987723 8.114678896 8.024339282 8.69878041 7.698350054 7.790130612 7.837823102 15224717 pbrA Metal Resistance Lead Arabidopsis thaliana 7.30825746 7.494442243 7.738932449 7.527849456 7.151631713 7.396654134 7.898750437 116617829 glnA Stress Nitrogen limitation Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 7.653886974 7.635973172 7.53197617 6.960252581 7.844233394 7.538572598 7.647555232 7.76531099 169761077 nitro Organic Remediation Others Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.772219878 7.753986226 8.018193512 8.228287196 7.910194737 8.202905642 8.27539997 8.130669606 8.159051752 145235793 chnB Organic Remediation Other Hydrocarbons Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8.471572693 8.42273981 8.317672197 7.919352031 8.602247473 8.324446635 8.421250326 83857409 katE Stress Oxygen stress Croceibacter atlanticus HTCC2559 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Croceibacter;species:Croceibacter atlanticus; 7.847658627 8.096972737 6.782147901 7.089654171 229327079 AceA Carbon cycling Carbon degradation others Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 8.092878078 8.194574686 7.144404468 7.306497082 7.471442312 7.110736784 7.117244681 7.733248455 7.080785217 7.604255699 7.302363589 115402429 endoglucanase Carbon cycling Carbon degradation Cellulose Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 8.385444607 8.158897923 7.623400922 7.718620854 7.627989376 7.282580352 6.892321351 7.431021979 7.164529149 7.589587625 116494837 obgE Stress Radiation stress Lactobacillus casei ATCC 334 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus casei; 8.188206012 8.263195245 7.825643332 7.943707156 7.865843884 7.523717945 7.513561123 7.963374801 7.936890525 7.967931327 7.854367056 15966345 atzA Organic Remediation Herbicides related compound Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 8.279657574 8.339524483 8.469269651 7.97218987 8.498414322 8.186544077 8.482991963 8.452702615 7.810746375 270284830 type_III_secretion virulence secretion Chlamydia muridarum Nigg superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Chlamydiaceae;genus:Chlamydia;species:Chlamydia muridarum; 8.196098859 8.418878811 7.686692951 7.859335505 7.6816117 7.807971544 7.538618954 8.011098873 7.894199126 7.510797303 7.839218974 119189943 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Coccidioides immitis RS superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides immitis; 7.218780573 7.05003051 150416369 primase Bacteria phage REPLICATION Enterobacteria phage phiEcoM-GJ1 order:Caudovirales;family:Myoviridae; 8.159886659 8.400276048 8.11180109 8.215089623 7.796151673 8.412845958 8.483248181 8.78127116 8.718361463 8.633178316 215484710 iro virulence Acinetobacter baumannii AB307-0294 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 7.871626828 8.253051482 7.381830036 7.470369808 7.287039989 7.231074772 6.983100368 7.283358303 217332829 nmoA Organic Remediation Aromatics Nitoaromatics Listeria monocytogenes HCC23 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria monocytogenes; 7.910112533 8.07590603 7.083702996 7.073452959 56911348 alkJ Organic Remediation Other Hydrocarbons Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 7.756475626 7.867991545 7.660911257 7.580941989 7.221458194 7.660328973 7.094920021 117926659 silP Metal Resistance Silver Magnetococcus sp. MC-1 superkingdom:Bacteria;phylum:Proteobacteria;genus:Magnetococcus; 7.823757929 7.334010853 7.837127184 8.048250602 7.230403045 7.40816285 7.227979458 73535195 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.938122357 8.116349212 7.413688113 7.241669657 7.472750653 7.135450879 7.399748412 7.511753476 6.980559786 7.120240268 7.410839305 126387286 PobA Organic Remediation Aromatics Aromatic carboxylic acid Acinetobacter baumannii ATCC 17978 7.774106467 8.059235896 6.955299261 6.995491431 6.547319207 7.483496548 34104622 endochitinase Carbon cycling Carbon degradation Chitin Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 8.592015444 8.481712049 8.180458617 8.042364927 8.002373184 8.058834986 7.94316497 8.386124772 7.825683379 7.536916876 7.859146091 160872880 MATE_antibiotic Antibiotic resistance transporter Rickettsiella grylli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Coxiellaceae;genus:Rickettsiella; 8.075054479 8.226002541 7.789608648 7.742623209 7.783691983 7.738544958 7.564318206 7.618487359 7.904766028 7.564142097 8.076102953 157404606 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 8.143468526 8.382935254 7.039465927 6.985005698 7.061980783 7.422530332 7.079843237 7.05858378 7.431589227 7.300057256 146194024 tfdA Organic Remediation Aromatics Chlorinated aromatics Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.182367996 8.33165746 7.87274299 7.895823654 8.455406141 8.524229546 8.012639012 8.840055495 8.188015793 8.084564359 8.363880755 49530730 sdsA Organic Remediation Others Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 7.134163193 7.413748531 7.104316884 7.036435828 7.549782762 82568131 gyrB other category gyrB Thermoflavimicrobium dichotomicum superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Thermoactinomycetaceae;genus:Thermoflavimicrobium; 8.232420715 8.321024465 8.084706114 7.924968064 8.18234765 7.550182084 8.030315768 7.764661871 8.130545636 8.300771449 7.764690166 198260449 sigma_24 Stress Sigma factors Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 7.927304416 7.816353991 7.744625553 7.69160294 8.401686309 8.149834642 8.217370239 8.082676153 8.130876 88600286 pstA Stress Phosphate limitation Neorickettsia sennetsu str. Miyayama 7.03923275 7.03988934 255064785 hao Nitrogen Nitrification Nitrosomonas sp. AL212 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 7.456846459 7.626610874 7.924727653 8.04841801 7.512001548 7.953902842 8.079704155 7.841044339 8.183029096 186909441 amoA Nitrogen Nitrification superkingdom:Bacteria; 8.434712077 7.949357336 7.837947148 8.370471482 8.309038287 8.263593284 8.052043913 7.819656922 7.879491399 76795313 atzA Organic Remediation Herbicides related compound Thermoanaerobacter ethanolicus ATCC 33223 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Thermoanaerobacter;species:Thermoanaerobacter pseudethanolicus; 7.200253539 7.222776629 7.043506621 6.874111525 6.859421442 145205126 sox Sulphur Sulphur oxidation Prosthecochloris vibrioformis DSM 265 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeovibrioides; 7.113058418 7.251261632 7.425354417 7.208468671 7.631719511 7.450507838 7.56347526 7.652435864 157804816 APS_AprA Sulphur adenylylsulfate reductase Thermochromatium tepidum 7.444416512 7.581339481 7.598506145 7.767324468 7.302220376 7.356711431 7.78954971 75825513 endochitinase Carbon cycling Carbon degradation Chitin Vibrio cholerae O395 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 7.607829462 7.337921486 7.209271855 7.105387052 7.578401162 99083239 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.367740641 7.282698117 7.495292363 7.402327435 7.331382313 7.691970212 7.407715588 7.526504293 7.54751118 29608437 linB Organic Remediation Pesticides related compound Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 8.044069132 8.166013941 7.96911139 7.78337961 7.456894378 7.670161705 8.025815668 8.016816052 8.048204492 7.662177786 7.992166574 227873316 nplT Carbon cycling Carbon degradation Starch Oribacterium sinus F0268 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Oribacterium;species:Oribacterium sinus; 8.851179648 8.982591411 8.484755176 8.383203821 8.273485509 8.079029892 8.110015876 8.199821284 7.947628946 7.86343115 8.605796906 86740213 TerD Metal Resistance Tellurium Frankia sp. CcI3 7.940729689 7.559478877 7.175481672 7.497265821 7.606163113 7.987246446 7.654862947 7.338334131 7.227651513 67904752 tftH Organic Remediation Aromatics Chlorinated aromatics Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.753549729 7.293995176 7.502969136 7.88385157 7.666071488 7.67787726 7.788919196 21646982 sox Sulphur Sulphur oxidation Chlorobium tepidum TLS superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 8.520204486 8.454326604 8.1634557 8.681250347 8.505586863 8.389807394 8.260073363 8.489369714 8.074228985 167033048 czcC Metal Resistance "Cadmium,Cobalt,Zinc" Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.514809257 8.50065829 8.663230939 8.873137118 8.604672016 8.698639386 8.837264618 8.828887406 8.798944671 15595679 AceB Carbon cycling Carbon degradation others Pseudomonas aeruginosa PAO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.326517042 8.443156162 8.411942314 8.308402101 8.022286993 8.237142572 8.331971678 8.124462157 8.10272867 8.133622853 7.994544313 160945305 Al Metal Resistance Aluminum Faecalibacterium prausnitzii M21/2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Faecalibacterium;species:Faecalibacterium prausnitzii; 7.432284007 7.768747345 91776906 Mex Antibiotic resistance transporter Methylobacillus flagellatus KT superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 8.200791857 8.531415443 7.809796827 7.650939077 7.658672004 7.674517102 7.570789267 8.26927207 7.63691205 7.650689297 7.77096853 149204236 pstB Stress Phosphate limitation Roseovarius sp. TM1035 8.246876619 8.284372102 8.086361738 7.873372795 7.762602357 7.614287433 7.90694882 7.816784589 7.809785146 7.872137439 229589851 iro virulence Pseudomonas fluorescens SBW25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.059132075 7.995229972 8.03025403 7.9841109 7.708772646 8.15550103 8.215132304 8.179098182 256361491 endochitinase Carbon cycling Carbon degradation Chitin Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 8.481396734 8.739697227 8.012153306 7.830371494 7.993851329 8.020434375 7.712250506 8.205649393 7.630900425 7.786637436 7.970024824 167760571 CopA Metal Resistance Copper Clostridium scindens ATCC 35704 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium scindens; 7.770442983 7.317684555 7.692309134 7.624945494 7.393342309 7.644664811 7.459267798 7.626932722 214037762 tfdA Organic Remediation Aromatics Chlorinated aromatics marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.383971291 8.454383646 8.123506652 8.088489308 8.001249355 7.467982722 8.007395126 7.808078903 8.168343642 8.412507125 8.038838533 218325155 iro virulence Vibrio splendidus LGP32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 7.175257953 7.148371257 7.390195431 6.903578829 7.085917677 7.638980488 7.474770567 7.413469341 7.452610057 116700254 ZntA Metal Resistance Zinc Syntrophobacter fumaroxidans MPOB 7.338474521 7.505212461 7.415028046 7.425378638 7.090686325 7.554047811 7.476458656 7.514409968 7.670682995 91780859 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.315296785 7.445121422 7.216013423 6.839175018 7.003376247 6.828662222 219856949 akbF Organic Remediation Aromatics BTEX and related aromatics Pseudomonas resinovorans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.553938719 7.916815858 7.779280203 7.297543503 7.804613594 7.221244273 7.710631303 196223616 pstC Stress Phosphate limitation Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 8.192833328 8.28861639 7.596972424 7.474643105 7.268345443 7.067424873 7.397246782 7.364216898 7.314225266 7.562052114 219997419 ArsC Metal Resistance Arsenic Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 8.114127357 8.114820754 8.378627119 8.371175763 8.091762266 8.271830098 8.181738006 8.206245324 8.357666035 8.21562282 7.887864242 218677860 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium etli CIAT 894 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.347383648 8.252309918 8.26393564 8.208411167 7.820999355 8.177110873 8.467225822 8.397828259 8.331526601 8.038703782 7.982977047 212527162 ABC_antibiotic_transporter Antibiotic resistance transporter Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.991778572 8.45553371 7.796324923 7.701053709 7.151135234 7.975942499 8.333045003 7.711578255 8.722149661 8.548575408 8.740076455 56314403 fnr Stress Oxygen stress Aromatoleum aromaticum EbN1 7.91419244 8.04882934 8.308801196 8.543234434 8.263075606 8.539127725 8.008005788 7.97909594 7.92898176 189419921 ppx Phosphorus Phosphorus utilization Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 8.09957039 8.124971254 8.047135445 7.520473885 7.951714186 7.913391485 7.779773119 7.696696266 7.73396966 255524908 ABC_antibiotic_transporter Antibiotic resistance transporter Clostridium carboxidivorans P7 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium carboxidivorans; 8.142525542 8.242944811 7.132923959 7.200761153 6.885663136 7.825885762 7.270624639 6.865835566 7.054545547 146402259 fnr Stress Oxygen stress Acidiphilium cryptum JF-5 8.316796897 8.077915554 7.898282159 8.409039593 8.25137129 8.362255709 8.135870136 8.149677886 8.010345348 147851197 fnr Stress Oxygen stress Synechococcus sp. RCC307 8.15857226 8.151076803 7.502710329 7.683367288 8.32848964 8.389379267 8.038211567 8.36844417 8.0521312 8.047167337 8.146890503 224397252 AceB Carbon cycling Carbon degradation others Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 8.210562295 8.36233607 7.432499366 7.438240265 7.762500143 7.585734943 7.11027486 7.829807375 7.100354547 7.324788118 7.720370413 120561778 silC Metal Resistance Silver Desulfovibrio vulgaris subsp. vulgaris DP4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 7.897267067 7.82523108 8.196109514 7.727077552 7.738856262 7.842565885 7.465550369 194684001 type_III_secretion virulence secretion Proteus mirabilis HI4320 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 8.330816496 8.114561664 7.914935241 7.657530465 7.421255598 7.414603108 7.274294952 7.586078029 7.277508697 7.970699181 90337528 sox Sulphur Sulphur oxidation Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 7.387239056 7.906282748 8.117536316 7.867008528 7.79044373 8.16548213 7.924159746 7.92953517 2621240 MFS_antibiotic Antibiotic resistance transporter Methanothermobacter thermautotrophicus str. Delta H superkingdom:Archaea;phylum:Euryarchaeota;class:Methanobacteria;order:Methanobacteriales;family:Methanobacteriaceae;genus:Methanothermobacter;species:Methanothermobacter thermautotrophicus; 7.989318817 8.348477615 7.472337468 7.784869923 7.549631945 7.318276059 7.045873748 7.635096562 7.576540207 7.259333061 7.724492577 261212165 oxyR Stress Oxygen stress Vibrio sp. RC341 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.130541317 7.954773967 7.801124876 7.985654846 8.006688297 7.868724143 8.034320913 8.043636158 8.127429262 157407646 vanA Carbon cycling Carbon degradation Others Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 7.548001724 7.294692861 7.826975092 7.803398286 7.121746062 8.207290034 7.556433916 7.444962 7.762594204 166200720 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 8.441434721 8.421088079 8.024691881 7.874276346 7.854635668 7.72845476 7.820955655 7.998561634 7.745744948 7.723302803 7.881893922 28852189 trzN Organic Remediation Herbicides related compound Pseudomonas syringae pv. tomato str. DC3000 8.622602126 8.519503245 8.058166039 7.87603135 7.990649203 8.066156136 8.095649411 8.486306755 7.949097755 7.724392505 7.884793519 116333433 hly virulence hemolysin Lactobacillus brevis ATCC 367 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus brevis; 7.353139966 7.106087073 91696778 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 8.341336004 8.088687858 7.606798258 7.829398421 8.092202017 8.559117519 7.884814747 7.916309485 7.936914884 8.139454775 69247834 ZntA Metal Resistance Zinc Enterococcus faecium DO 7.212605128 7.114255372 7.033449429 7.082827509 6.880612281 117561083 pimF Organic Remediation Aromatics Aromatic carboxylic acid Aeromonas hydrophila subsp. hydrophila ATCC 7966 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas hydrophila; 8.734394955 8.679743183 8.094494004 9.150892878 9.375225898 8.905446257 9.166407504 9.168405042 9.156159485 9.31785609 114797686 pcc Carbon cycling Carbon fixation Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 7.55007303 7.685158213 7.89539557 7.356129057 7.928443 7.422050612 7.605314162 7.509214941 119371714 narG Nitrogen Denitrification Thauera aromatica superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 8.335780395 7.838649444 7.730130984 7.930947639 8.089058003 8.121713661 7.783318634 7.888228651 7.581074826 158522906 silC Metal Resistance Silver Candidatus Desulfococcus oleovorans Hxd3 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus;species:Desulfococcus oleovorans; 7.975487179 7.931470831 8.32890312 8.534693359 8.336876671 8.652763715 8.109149444 8.233847075 8.367360602 148844004 ahpC Stress Oxygen stress Planctomyces maris DSM 8797 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces maris; 7.363588574 7.561705198 8.068335295 8.376021718 8.078829817 8.161969102 7.877113262 8.043664743 7.692863785 119195617 nbaC Organic Remediation Aromatics Nitoaromatics Coccidioides immitis RS superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides immitis; 7.353405106 7.289842538 7.118911326 7.131069402 6.969824992 7.119577323 283811623 sigma_24 Stress Sigma factors Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 8.591080422 8.229077639 8.343251483 8.126785561 8.443205093 8.447788784 8.37317762 7.782340633 8.105995714 112462885 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.506534354 7.682337406 7.897177206 7.742908873 7.147791372 7.879781579 39934082 proO Organic Remediation Aromatics Other aromatics Rhodopseudomonas palustris CGA009 7.39619584 7.083917699 7.951841326 7.719872605 7.539713165 8.143374802 8.176869362 7.920436261 7.806255789 114538805 Catechol Organic Remediation Aromatics Other aromatics Fulvimarina pelagi HTCC2506 7.880297455 7.661184196 8.055961126 8.2464673 8.059003781 8.182636886 8.058507184 7.991749332 7.84799539 94470881 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.056880673 8.324011131 7.546276559 7.582087649 7.609277618 7.395773069 7.223072315 7.881883451 7.565252506 7.702185684 118039822 silC Metal Resistance Silver Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8.025063808 8.433740071 8.009854477 7.640596899 7.531977572 7.194104959 7.360504506 7.57534309 7.271579584 7.728461908 107102033 ArsC Metal Resistance Arsenic Pseudomonas aeruginosa PACS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.085409098 8.356744051 7.212275749 7.648511897 7.862225254 7.263708984 8.11458183 7.463160708 7.604688086 7.455964186 91698210 grpE Stress Heat shock Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 7.548385452 7.411361975 7.298761544 7.278462319 7.48779147 7.907689768 7.69712997 7.295563734 7.585781981 83842486 hly virulence hemolysin Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 8.507782503 8.768397326 8.304486275 7.808633681 8.036496317 7.720842273 7.821877825 7.32914759 7.829198128 7.6242426 8.054906675 94493329 gyrB other category gyrB Rickettsiella grylli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Coxiellaceae;genus:Rickettsiella; 7.112814983 7.021554539 7.228155908 7.166431128 7.072333122 256401147 phoB Stress Phosphate limitation Thermoanaerobacter sp. X561 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Thermoanaerobacter; 8.104026512 8.201091436 7.352084997 7.353263302 7.348146655 7.040365334 7.594637104 7.236779593 7.472618575 166860392 B_lactamase_C Antibiotic resistance Beta-lactamases Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.571483906 7.619345658 7.937043941 7.418593549 8.061109071 7.758773124 7.909817652 8.165102723 7.511946414 218988943 inv virulence invasion Salmonella enterica subsp. salamae serovar Sofia superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 7.970646274 8.071059138 7.308750523 7.253220577 7.489717533 7.309510145 6.854370466 225872268 glnA Stress Nitrogen limitation Acidobacterium capsulatum ATCC 51196 7.944297814 8.359288844 7.694907711 8.209048081 8.122494549 8.163573898 8.160820553 8.344003524 7.780428405 167646252 CadA Metal Resistance Cadmium Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.068631155 8.311037833 8.07618026 7.793823153 8.059094668 8.122576129 8.489772963 8.458823563 8.292205518 8.112062836 253579343 dsrA Sulphur sulfite reductase Ruminococcus sp. 5_1_39B_FAA 7.369514838 6.927157135 149202711 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.294998845 8.094425879 7.903016823 8.07093816 8.512045167 8.46234129 8.134722775 8.411265571 116671432 groEL Stress Heat shock Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8.045759422 8.310976968 8.095052229 8.256828942 8.013116621 8.175864052 8.312881718 8.355749618 8.352841963 8.224308992 154248509 CopA Metal Resistance Copper Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.484305696 8.258707904 7.603752117 7.5470849 7.800938091 7.719182815 7.350698712 8.049508837 7.485079519 7.374457123 7.761907279 148502366 cumA Organic Remediation Aromatics Other aromatics Sphingomonas wittichii RW1 7.110433426 7.146259089 7.506396301 7.865002966 7.319545143 7.687042709 7.355376936 7.341609244 7.628934872 124485292 pstB Stress Phosphate limitation Methanocorpusculum labreanum Z 9.092769672 9.405518808 8.486491574 8.385975242 8.412332474 167830624 pstB Stress Phosphate limitation Finegoldia magna ATCC 29328 7.427090366 7.389308891 7.690376273 7.142821566 7.192896607 7.421027947 7.743345497 7.366692991 8.065843799 23494189 ChrA Metal Resistance Chromium Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 7.938298988 8.169330475 8.025885077 8.157594193 8.420850455 8.361643576 8.636466807 8.1875476 8.256545508 214042877 alkB Organic Remediation Other Hydrocarbons Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.708784297 7.83554101 7.913731208 7.611918862 8.247048891 7.848578327 8.139540864 7.920981733 8.170157656 68445596 CODH Carbon cycling Carbon fixation uncultured crenarchaeote 10-H-08 superkingdom:Archaea;phylum:Crenarchaeota; 8.427024286 8.582898533 7.948885558 7.837135254 8.135789937 7.744161722 7.263669451 8.256352059 7.605205422 7.409455361 7.895158732 126627368 gyrB other category gyrB Marinobacter sp. ELB17 7.609086453 7.508178994 7.659690705 7.299349019 7.680632191 7.885177281 7.622290037 7.545003426 7.58017842 55377009 P450 Energy process Energy process Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 8.863584864 8.629724927 9.228640007 9.176804153 8.821434252 9.11374561 8.789219354 8.346374882 218761931 fnr Stress Oxygen stress Desulfatibacillum alkenivorans AK-01 8.217625152 7.934860525 8.49181669 8.340838403 8.189647146 8.481990494 8.277172925 7.96672757 7.970619824 8.047711954 7.843734362 104779489 nmoA Organic Remediation Aromatics Nitoaromatics Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 8.07011147 8.562128627 8.417486809 8.017920335 7.483891989 7.792538397 7.931169929 8.316678364 7.91616604 7.749435554 7.595664876 44829075 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.70075284 8.024484612 7.550684092 7.435428967 7.506479869 6.808155964 7.015103624 7.456297462 7.258332029 7.112840259 134298215 TerZ Metal Resistance Tellurium Desulfotomaculum reducens MI-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum reducens; 7.840391489 7.77266658 7.431184329 7.388741311 157913480 nirS Nitrogen Denitrification Dinoroseobacter shibae DFL 12 7.716319628 8.064076478 8.463271318 8.776265792 7.818537766 7.842830739 8.123701713 8.221973181 159890846 sigma_32 Stress Sigma factors Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 7.476041916 7.490207114 7.985686665 8.164875445 7.320071471 8.511541551 7.638301752 7.520008212 8.009379208 262311354 pilin virulence pilin Acinetobacter junii SH205 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter junii; 7.765222049 7.83536982 7.46786764 7.70069168 7.613599347 8.023649229 7.718324645 7.383880452 7.645539126 242766628 MFS_antibiotic Antibiotic resistance transporter Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 7.978458331 8.28728843 7.30435239 7.510149479 7.340222976 7.798879757 7.592804592 83857396 ZntA Metal Resistance Zinc Croceibacter atlanticus HTCC2559 7.841333226 7.881407782 219939022 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.732125829 7.412936477 7.813630593 7.965590978 7.835449868 7.859348619 7.596532788 7.648583707 70930934 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.760365373 8.088714187 7.908747212 7.217690717 7.62538741 7.629786278 7.525158256 8.034374668 7.458376529 91721366 TerZ Metal Resistance Tellurium Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 8.457019133 8.414491314 8.023294519 8.209490318 8.14896158 8.421711777 8.048067304 8.599491503 7.983948761 7.755273616 7.997085194 170694440 nhh Organic Remediation Aromatics Nitoaromatics Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 7.508527458 7.402364297 7.578159109 7.461276478 7.411066732 8.024454063 7.466471133 7.616486886 24421491 nirS Nitrogen Denitrification uncultured organism 7.952843573 8.227913771 8.225350519 8.115923777 7.935001369 8.260584744 8.179214267 8.331914096 46915065 hly virulence hemolysin Photobacterium profundum SS9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 6.69875874 7.540927314 223938046 Tet Antibiotic resistance other bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 7.054600246 7.154825138 73487245 rubisco Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.718809035 7.322847366 8.00223515 7.796497055 7.155157681 8.112990415 7.699981702 7.74984472 254432815 hrcA Stress Heat shock Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 7.864060407 8.121165899 7.554010212 7.559605952 7.555749414 7.822316502 8.087648211 8.506484043 8.072150408 8.093988897 196247862 Al Metal Resistance Aluminum Geobacillus sp. G11MC16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.051383962 8.265192577 7.859026698 7.638122192 7.475664984 7.44742753 7.571331652 8.015135666 7.714705411 7.489244164 7.689596224 225214734 sigma_70 Stress Sigma factors Brachyspira hyodysenteriae WA1 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Brachyspiraceae;genus:Brachyspira;species:Brachyspira hyodysenteriae; 8.024389382 8.177098266 7.551895832 7.123306729 121530811 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 7.34883517 7.150020715 7.203313994 6.830836481 7.515793596 7.194199474 7.122670886 7.274751068 156055248 AceA Carbon cycling Carbon degradation others Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 7.913052769 7.829156404 7.543596108 7.755127335 7.574289867 7.847007909 7.472825742 7.696451066 7.594848029 114552723 ZntA Metal Resistance Zinc Mariprofundus ferrooxydans PV-1 7.152950219 7.247177427 221069682 tfdA Organic Remediation Aromatics Chlorinated aromatics Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.300209278 8.134742472 8.199710881 8.248617218 8.084919612 8.116652356 7.865951429 7.91008071 7.943616298 260063925 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.864618484 8.125825244 7.24326739 7.487270746 7.13153645 218888253 CopA Metal Resistance Copper Desulfovibrio vulgaris str. 'Miyazaki F' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 9.119342612 9.184442845 8.740729632 8.562501528 8.51043472 8.803078293 8.840511415 9.034215808 9.060644478 8.775871057 48728356 B_lactamase_C Antibiotic resistance Beta-lactamases Laribacter hongkongensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Laribacter; 7.141212572 7.35766164 7.567268277 7.381648414 68135545 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.532202624 7.998883657 7.305407183 7.208578147 7.141295149 7.083196233 7.016635189 7.56617242 7.057225222 7.039249378 7.092995225 209531090 katE Stress Oxygen stress Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 7.976200891 8.105597465 7.801512989 7.754898968 7.929871601 8.014264864 7.766335318 7.783184782 8.138692479 220723632 endoglucanase Carbon cycling Carbon degradation Cellulose Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 7.434123249 7.654828984 7.525373717 7.428245677 7.063641526 7.733263817 7.311279505 7.199740698 16126640 pimF Organic Remediation Aromatics Aromatic carboxylic acid Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 7.565247393 7.232943248 7.90942687 8.405681313 7.525389529 7.935442838 7.911693266 116254540 proX Stress Osmotic stress Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.107574446 8.122305208 7.543461798 7.688317621 7.453904563 7.523786228 7.704071724 7.966119699 7.862930571 7.81265902 7.756382806 119773650 TerC Metal Resistance Tellurium Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 7.228563431 7.465404893 7.77639021 7.717456312 7.365346031 7.404232726 7.781114886 8.062817046 157285724 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.939541087 7.740274806 7.449441746 7.547058214 7.48460854 7.455313363 84516744 pimF Organic Remediation Aromatics Aromatic carboxylic acid Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 7.631132455 7.703088142 7.691693007 7.690245297 8.138992328 7.919391491 8.180933366 7.8799552 7.861685468 77458497 tfdA Organic Remediation Aromatics Chlorinated aromatics Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.753838567 7.794895849 7.541716761 7.516349962 7.977709857 8.080205269 8.110410066 8.0568513 8.120525058 209909111 dmsA Organic Remediation Others Enterobacter cancerogenus ATCC 35316 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 8.710802776 8.14739397 8.114886346 7.75725933 8.449974019 7.783325429 7.688387069 7.772342604 7.741121522 8.127047102 7.959062095 223017319 ureC Nitrogen Ammonification Actinobacillus minor 202 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus minor; 7.779975477 7.22789659 7.399558073 8.187921378 7.749632042 7.417431253 7.294158634 7.600895563 7.595657206 146304352 universal_stress_Family_protein_III Bioleaching other category Metallosphaera sedula DSM 5348 8.229416028 8.535538441 8.12642007 8.028597185 7.820926598 7.917358642 7.747097895 8.466124121 7.908570285 8.0037762 7.802793824 254818537 CDH Carbon cycling Carbon degradation Cellulose Mycobacterium intracellulare ATCC 13950 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 7.936324341 8.161773972 7.574701438 7.612991082 7.621901348 7.414695584 7.178728592 7.936515019 7.570380531 7.339194571 7.48992433 39934830 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.675830653 7.789033226 7.556538795 7.776291375 8.02757866 8.115078305 8.032012631 7.582694754 7.93864897 78515503 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.05592754 8.218368778 8.239140049 8.379510017 8.474727457 8.369688698 8.604147446 8.536857342 8.486296589 222080795 Tet Antibiotic resistance other Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.281225592 8.348379976 7.642612549 7.638727401 7.73679919 7.85736655 7.534307808 7.921099229 7.993886467 7.730800862 8.127804424 111153558 gdh Nitrogen Ammonification Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 7.563711019 7.693000222 8.487327919 8.557182744 8.029257043 7.888750656 8.267910419 8.233262373 158111560 Catechol Organic Remediation Aromatics Other aromatics Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 7.954065895 8.030615258 7.693283907 7.727504386 7.969560915 7.876544718 8.079215027 7.9938077 8.088418859 163841735 alkK Organic Remediation Others Renibacterium salmoninarum ATCC 33209 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Renibacterium;species:Renibacterium salmoninarum; 7.42455941 7.443538176 7.555586646 7.418612503 7.644449923 7.942090797 7.438968418 7.933928748 7.456590174 118666721 proO Organic Remediation Aromatics Other aromatics Delftia acidovorans SPH-1 7.894347137 7.43656597 7.517352877 7.46221578 7.661570164 7.883110617 7.659283906 7.52067151 7.508797497 167588349 fnr Stress Oxygen stress Burkholderia ubonensis Bu 8.755640383 8.647623762 7.861926303 8.215602637 8.2990015 8.693414431 8.005318914 8.628074408 8.400491745 8.393323158 8.385513926 153886762 CopA Metal Resistance Copper Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 7.463749966 6.890500719 6.990379642 7.714498739 116229449 sigma_24 Stress Sigma factors Candidatus Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 7.552349438 7.587692728 8.332776141 7.524098317 7.651906895 7.907452329 7.426592479 7.93315488 7.28415637 81170139 ahpC Stress Oxygen stress Synechococcus elongatus PCC 7942 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus;species:Synechococcus elongatus; 7.155478543 7.029189664 7.32590575 7.429055639 7.994591918 7.373674964 6.920791611 7.589470691 149145676 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 6.985247951 7.202060798 7.192311763 6.875744631 6.79358194 7.38580688 7.098830178 6.874810568 6.958556473 187426354 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Akkermansia muciniphila ATCC BAA-835 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Akkermansia;species:Akkermansia muciniphila; 7.798463142 7.613990835 7.270248009 8.14546194 7.920530743 7.771037385 7.987449773 7.986159835 58041826 nagI Organic Remediation Aromatics Aromatic carboxylic acid Klebsiella pneumoniae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella; 8.26496842 8.138976378 7.680271318 8.100006292 8.22175724 8.507119492 7.955784752 8.14408443 8.259762575 8.302898037 21108741 glnA Stress Nitrogen limitation Xanthomonas axonopodis pv. citri str. 306 8.09426619 8.46650232 7.613186466 7.60354379 7.289482303 7.424956074 7.14372782 7.249558501 7.565104767 219847774 BchY other category chlorophyllide reductase Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 8.30910687 8.508146965 8.262367468 8.083515975 8.194048301 8.036621276 8.138868668 8.089370974 8.244177882 8.097746086 7.942839363 151590210 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Methylobacterium extorquens PA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 8.22904792 8.194639689 8.178667484 8.392285327 8.401474389 8.418487297 8.528524698 8.554737391 142850505 CorC Metal Resistance Cobalt Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 8.238519308 8.221233888 8.255432827 8.16752274 8.06385976 8.361709269 8.29551102 8.182315667 8.339129249 8.501405533 8.150547111 219864376 pstA Stress Phosphate limitation Cyanothece sp. PCC 7425 7.574921827 7.240936554 7.217731975 7.06017019 7.625924964 7.261590845 7.379191845 144897605 dmsA Organic Remediation Others Magnetospirillum gryphiswaldense MSR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 8.266896825 8.112165003 7.807675665 7.984267269 7.699628945 7.768463114 8.139814004 8.373245672 8.232464105 8.004475025 8.02752366 84712064 nagG Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8.499309756 8.119792062 7.625809423 7.874348514 8.166749328 8.588605439 8.048247852 8.165107103 7.931443545 7.895999439 7.766918595 24380394 CadA Metal Resistance Cadmium Streptococcus mutans UA159 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus mutans; 8.499124017 8.686988074 7.487886914 7.70326691 7.696497482 7.962571688 7.4721764 7.182329756 7.537439629 7.894109078 7.695522982 116672125 alkK Organic Remediation Others Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.563826504 7.224325233 7.549009929 7.772072944 7.268844493 7.838862091 7.586041766 7.291895362 91697317 ArsC Metal Resistance Arsenic Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 8.325175261 8.54737432 7.688446555 7.840795069 8.07276541 7.934266084 7.563085156 7.968695775 7.690306528 8.048660658 2196840 gyrB other category gyrB Shewanella oneidensis MR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella oneidensis; 7.295691787 6.992775041 7.789362966 7.417137348 7.243894419 7.125709755 39981909 cap virulence capsule Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 7.944534459 7.77091019 7.595878489 7.824463608 7.917716546 8.226917066 7.83976725 7.629419511 7.734865158 117164963 ppx Phosphorus Phosphorus utilization Streptomyces ambofaciens ATCC 23877 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ambofaciens; 8.410901411 8.419470258 8.22759276 8.382173264 8.276648089 7.938234369 8.424613761 8.442994943 8.227605602 8.21254937 8.285948528 253986247 pstB Stress Phosphate limitation Methylovorus sp. SIP3-4 7.941804797 8.091684401 7.606909477 7.654883722 7.489982492 7.401604355 7.232999833 7.545442649 7.195638906 7.050261062 7.515956905 219720558 cnrC Metal Resistance "Cobalt,Nickel" Stenotrophomonas sp. SKA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 7.607203694 7.59165233 7.571868191 7.044461814 7.709773496 7.683671737 7.53816614 7.710833419 7.477483125 229869994 glnA Stress Nitrogen limitation Spirosoma linguale DSM 74 6.987326422 7.140593727 7.167824942 260438991 ahpF Stress Oxygen stress Butyrivibrio crossotus DSM 2876 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Butyrivibrio;species:Butyrivibrio crossotus; 7.957394465 7.998440305 7.52872333 7.540428493 7.561102099 7.653987719 7.356726605 7.85865794 7.354112061 7.203853511 7.548486885 145217052 limEH Carbon cycling Carbon degradation Others Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.41649895 8.085961693 9.052891899 9.072641279 9.075089216 8.629990512 9.232639939 8.748193555 9.157748989 9.250078843 8.328753536 112462627 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.267894933 7.90330371 7.752042047 8.139719866 8.118327671 7.834190618 8.141438091 23493700 TerC Metal Resistance Tellurium Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 8.330840923 8.455358217 8.091629398 8.318356004 8.020593421 8.004363782 8.088421488 8.28899054 8.161815784 8.138467655 39975535 exochitinase Carbon cycling Carbon degradation Chitin Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 7.699443865 7.879597015 7.936647462 7.692200726 8.017636207 8.09874595 8.07185854 7.992020264 8.137908605 255108040 fnr Stress Oxygen stress Sideroxydans lithotrophicus ES-1 7.785883973 8.361324283 7.81962965 7.861028226 7.819208929 7.706867741 7.740141369 7.673522534 8.044059609 7.643454047 7.269039334 72609101 amyA Carbon cycling Carbon degradation Starch Burkholderia cepacia AMMD superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 7.617754222 7.7855445 7.865286753 7.81990366 7.155686704 7.784405109 7.834402068 7.827947504 271502546 sigma_32 Stress Sigma factors Dickeya dadantii Ech586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 8.049271719 8.101583423 7.698465349 7.779438698 7.663646469 7.827869987 7.663834173 7.833698793 7.867859957 7.761092011 7.347993942 148259190 NADH_ubiquinone_oxidoreductase Bioleaching Electron transport Acidiphilium cryptum JF-5 7.80034553 7.747094746 7.373000941 7.720416634 7.940947327 7.987820011 8.243551739 7.655864263 164510323 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.164483149 8.305996671 7.558317438 7.438267915 7.597299147 7.333110823 7.268107637 8.095605845 7.606687264 7.341612849 7.575291704 39647574 badK Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris CGA009 8.300030753 8.253148137 7.401597607 7.499356303 7.745246559 7.748051192 7.044129513 7.214498321 7.465064587 7.380336098 74422794 benAB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens 7.480293458 7.426817747 7.583971119 7.699726811 8.050448235 7.338133306 7.042803825 7.570603957 229209680 sigma_70 Stress Sigma factors Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 8.080132616 8.26633973 8.204087935 8.031083716 8.320147338 8.088802666 8.193837489 8.463737796 8.313044165 18312527 AceB Carbon cycling Carbon degradation others Pyrobaculum aerophilum str. IM2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum aerophilum; 7.665638637 7.329545997 7.757997862 7.55835238 7.484542911 7.946301998 7.6852865 7.19189954 7.390405178 224817399 sigma_32 Stress Sigma factors Thioalkalivibrio sp. K90mix superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 8.797670966 8.97476022 8.104588959 8.324722235 8.655766972 9.100832759 8.0802421 9.066819268 8.464192255 8.400560967 8.693681577 225793273 sigma_24 Stress Sigma factors Acidobacterium capsulatum ATCC 51196 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteria;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 7.825263686 8.134341736 7.972837102 7.589647934 7.380015673 7.651820861 7.372787684 7.751042312 7.638356253 7.411518152 7.525366055 240948248 toxin virulence toxin Actinobacillus minor NM305 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus minor; 7.175688052 6.845084106 7.284618472 6.792784335 7.325337276 7.036308641 6.997665603 92910784 ophC Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.029488869 7.983281118 8.028450094 7.789727352 8.503990684 8.138848741 8.238962307 8.691948981 8.298113838 148281498 TerC Metal Resistance Tellurium Legionella pneumophila str. Corby superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella;species:Legionella pneumophila; 7.75178425 8.122158283 110171816 cap virulence capsule Ruminococcus flavefaciens superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus; 7.481954444 8.036410144 7.479127078 7.221287218 8.224284238 7.447609379 7.883695791 134292982 phtA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 8.459722723 8.574369087 8.113574683 8.455168874 8.069117489 8.362011374 8.319624124 8.542271396 8.037228613 269828095 type_III_secretion virulence secretion Vibrio alginolyticus 40B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 7.138127819 7.109234843 85083355 endoglucanase Carbon cycling Carbon degradation Cellulose Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 9.641341691 9.792991677 9.004146008 9.184717645 9.5275385 8.976516263 8.810796166 9.430328872 9.269011204 9.419705542 9.51201598 192897590 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 7.732112757 8.223239861 8.333181153 8.444008932 8.801043013 8.460022931 8.784147199 8.67450285 126708209 exaA Organic Remediation Chlorinated solvents Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 8.235774622 8.314458601 7.300707201 7.393737767 7.44876567 7.496337725 7.537367519 7.419470577 260905595 AceB Carbon cycling Carbon degradation others Brevibacterium linens BL2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium linens; 7.552116341 7.595395504 7.479206818 7.51331851 7.941992567 7.95936611 7.935326927 7.898311924 7.985452931 148655157 srt virulence surface protein Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 8.284428511 8.390801098 8.248682869 8.11797746 8.39088807 7.517862248 8.328801249 8.270925916 8.281321264 8.481778859 7.869956441 239911413 pstB Stress Phosphate limitation Thermococcus gammatolerans EJ3 7.554633904 7.562053451 7.549608373 7.35881964 7.544060893 7.712435344 7.581853078 30180381 CueO Metal Resistance Copper Nitrosomonas europaea ATCC 19718 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas europaea; 8.038730315 7.946897682 7.453362397 7.927407486 7.825959498 8.288409375 7.656412522 7.77075088 7.611448867 7.215876903 44662845 sigma_70 Stress Sigma factors Meiothermus ruber DSM 1279 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 7.926600067 7.933366448 7.949647464 8.20931556 8.169687035 7.891050411 8.104424294 120586838 type_III_secretion virulence secretion Desulfovibrio vulgaris subsp. vulgaris DP4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 7.340731907 7.217682841 7.433385605 7.256110691 7.104645241 7.836021908 7.401705855 6.993121307 116222759 sigma_24 Stress Sigma factors Candidatus Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 7.586841881 7.752019025 7.36899094 7.656005247 146274109 pstB Stress Phosphate limitation Pelotomaculum thermopropionicum SI 7.315549579 7.547782476 7.361394742 7.489184715 7.492743532 70730631 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.629196092 8.45066101 8.166060988 8.183701793 7.918839453 8.037681334 8.313233993 8.060570855 7.950243235 8.508623523 40051 catechol_B Organic Remediation Aromatics Other aromatics Geobacillus stearothermophilus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.798883423 8.306424493 7.060511279 7.072726273 6.956787141 6.802726941 6939896 gyrB other category gyrB Bacteroides vulgatus superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 7.843651678 8.194267105 7.912602236 7.88594454 7.761239092 7.888324036 7.887308019 7.904529157 8.15793398 8.08403602 7.790956395 46578818 dsrA Sulphur sulfite reductase Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 7.702420248 7.489091678 7.572523766 7.648646791 7.060336201 8.042660331 7.474898995 7.43860229 7.340689919 188575037 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Xanthomonas oryzae pv. oryzae PXO99A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 7.567385227 7.404836109 7.375972768 7.127861211 7.25964281 7.562326577 7.343326128 7.093263263 7.309784204 111017396 CDH Carbon cycling Carbon degradation Cellulose Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.058560137 8.182738769 7.569324075 7.419474423 7.865457781 7.951719351 7.487696638 7.428250534 7.425223205 7.583274056 169811931 AceA Carbon cycling Carbon degradation others Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 7.410310645 7.195113402 7.382167431 7.200587905 7.082590468 7.759169292 7.590066638 7.607759302 7.586449603 119951247 nagI Organic Remediation Aromatics Aromatic carboxylic acid Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 7.578090622 7.820858656 8.037391548 7.295918462 7.6912917 7.987022724 7.533617477 8.050884762 7.464899186 260423532 katE Stress Oxygen stress Citreicella sp. SE45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 7.257256717 7.130984687 7.302887167 7.213998425 6.974717279 7.125814187 14523471 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 7.929744307 8.5069392 7.364462198 7.397477719 8.001146398 8.084053114 7.766807292 8.151820324 7.910740159 7.790998661 8.052752117 219883278 merB Metal Resistance Mercury Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 8.169871742 8.161891641 8.214657945 8.34615059 8.333997695 8.611783789 8.227476677 8.321993751 8.177599167 8.26382186 7.742448126 163782567 CueO Metal Resistance Copper Hydrogenivirga sp. 128-5-R1-1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenivirga; 8.356621105 8.557575424 8.343574891 8.051694306 7.831811443 7.731712628 7.954697861 8.169856737 8.077890424 7.888771114 7.990100753 119964148 gyrB other category gyrB Arthrobacter aurescens TC1 7.652198285 7.455474531 7.456347575 7.192848095 99083383 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 6.965315731 7.034866648 6.550363585 7.295643797 52631724 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.987852527 7.622347758 7.930432401 8.333442806 8.840804849 8.629861167 8.090821391 8.46317008 81300845 phtA Organic Remediation Aromatics Aromatic carboxylic acid Synechococcus elongatus PCC 7942 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus;species:Synechococcus elongatus; 7.706946264 7.522514377 7.273996015 7.123547468 7.459901272 7.779978803 7.587878197 7.115636936 7.399137109 62731974 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.25195461 8.604410773 8.045532408 8.057681503 7.931279193 7.863837245 7.512490839 7.700613792 7.842426069 8.075910156 197330419 amyA Carbon cycling Carbon degradation Starch Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.141540111 8.095910285 7.994205838 8.228909081 8.064356433 8.078621783 7.864220101 7.781089334 8.103320685 148263805 Arylest Organic Remediation Aromatics Other aromatics Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 8.707300359 8.352979136 8.34567046 8.573296525 8.365897222 8.681128864 7.738030775 7.755516726 8.2804764 218757427 obgE Stress Radiation stress Desulfovibrio vulgaris str. 'Miyazaki F' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 8.13820326 8.1673233 8.119275039 7.849738309 8.30916347 8.056850249 7.910386104 7.872363608 8.012788881 260222065 AceB Carbon cycling Carbon degradation others Curvibacter putative symbiont of Hydra magnipapillata superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 9.877861181 9.880983546 9.935878338 161339353 catechol_B Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 8.346422308 8.25319113 7.754467708 7.583844956 7.618337264 7.749278134 8.104845465 7.996990164 7.83020878 7.954218198 90439596 pcaG Organic Remediation Aromatics Other aromatics Vibrio angustum S14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium angustum; 7.543197631 7.258483052 7.428619978 7.32609249 7.839741718 7.709879632 7.570742841 7.650292239 7.77314267 32261764 nrfA Nitrogen Dissimilatory N reduction Helicobacter hepaticus ATCC 51449 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter hepaticus; 8.343243385 8.482122237 8.059099887 8.307252404 8.166201987 8.185123336 8.364914155 8.27196244 8.471931132 8.321823311 8.440632968 115353433 endochitinase Carbon cycling Carbon degradation Chitin Chaetomium globosum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium; 8.091063924 8.228108542 7.283138741 7.222078158 7.410488184 7.417856377 6.873905743 7.420153916 7.667021879 7.494062445 1592313 nifH Nitrogen Nitrogen fixation Methanocaldococcus jannaschii DSM 2661 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanocaldococcaceae;genus:Methanocaldococcus;species:Methanocaldococcus jannaschii; 7.529802343 7.331043408 7.334932694 7.217452238 7.507866067 7.742671784 7.700295615 7.234220149 7.674007132 170690758 Catechol Organic Remediation Aromatics Other aromatics Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 7.456579353 7.497427317 7.644931005 6.989619581 7.227761377 7.888909931 7.427528155 7.840449083 7.39294915 23428544 sigma_38 Stress Sigma factors Serratia plymuthica superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 8.256138895 8.042031115 7.178980974 7.057104406 7.233216789 108462023 MATE_antibiotic Antibiotic resistance transporter Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 9.249962568 8.876460694 8.75361977 9.134928015 8.960834714 9.262058818 8.734374843 9.10942326 8.739146004 8.853962576 8.792213055 47019056 SMR_antibiotics Antibiotic resistance transporter Listeria monocytogenes str. 4b H7858 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria monocytogenes; 7.60019501 7.352841346 120401609 tfdB Organic Remediation Aromatics Chlorinated aromatics Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.41369396 8.183976861 8.212299599 8.071408284 8.433795521 8.010014016 7.999079936 7.964666602 58337825 FTHFS Carbon cycling Acetogenesis Lactobacillus acidophilus NCFM superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus acidophilus; 7.124977687 7.079587681 6.743969891 6.843151958 7.45274025 119856034 atzB Organic Remediation Herbicides related compound Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.949331669 8.838286353 8.451065055 8.624679772 8.799738399 9.266757443 8.375861379 9.069012954 8.567919039 8.466445478 8.657291591 17232133 ahpC Stress Oxygen stress Nostoc sp. PCC 7120 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc; 8.158083745 8.449893656 7.62855665 7.444527984 7.586842336 7.523127562 7.214738223 7.7565579 7.43901745 7.615837624 7.431427903 86748877 NiR Nitrogen Assimilatory N reduction Rhodopseudomonas palustris HaA2 9.701174666 9.446256424 9.293176416 206568620 phn Organic Remediation Herbicides related compound Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 7.567276206 7.430973133 8.14071997 8.17722252 7.925354269 8.388735205 8.046847646 8.022679514 8.1375056 15897891 formate_hydrogenlyase_complex Bioleaching Carbon fixation Sulfolobus solfataricus P2 7.054992529 7.105601914 193201727 bphA Organic Remediation Aromatics Polycyclic aromatics Bordetella sp. IITR02 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 8.536543069 8.592917427 7.599684015 7.984074918 8.082978131 8.430590337 8.405730661 8.765558943 8.270907689 8.258124721 8.430842771 17431362 xylG Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 8.284019118 8.57148592 7.659563076 7.710165211 7.851424225 7.848455949 7.210217105 8.113119254 7.632742892 7.396729194 7.837793773 56809505 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.931020062 8.062822252 7.460522455 7.390855369 7.30401046 6.912835583 6.909792204 7.516752946 7.156006607 7.238609336 78212641 nitA Organic Remediation Aromatics Other aromatics Synechococcus sp. CC9605 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.594417273 7.937785341 8.213898462 8.226588313 7.639466975 8.158965039 7.717815938 7.753197623 8.278666611 91214887 fnr Stress Oxygen stress Psychroflexus torquis ATCC 700755 6.907586878 7.206854689 6.980773892 6.861323504 7.470899687 167647614 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 7.615586953 7.505467263 7.569779934 7.295403775 7.383842307 7.7285442 7.580226434 7.557113667 7.7531615 160899702 katE Stress Oxygen stress Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.188215387 7.987109445 8.130861795 7.804561733 7.484361109 7.617907499 7.825786846 8.108653573 7.810398789 7.66933645 7.566198164 154351471 B_lactamase_B Antibiotic resistance Beta-lactamases Bacillus amyloliquefaciens FZB42 8.651708211 8.393764086 8.049176648 7.861944656 7.699505487 7.876979147 8.424422273 7.965267039 7.45109413 7.857836042 148834499 dmsA Organic Remediation Others Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 7.577939075 7.745604896 7.324209764 7.779442635 8.044656527 7.489102554 7.554424788 7.469706123 239905010 narI Stress Oxygen limitation Desulfovibrio magneticus RS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio magneticus; 8.232815874 8.200797179 7.973122286 7.866500712 8.024095087 8.09432507 8.017270501 7.816849029 7.802322215 7.911684318 7.798909843 257803373 grpE Stress Heat shock Enterococcus gallinarum EG2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus gallinarum; 8.169929126 8.185822941 7.447390443 7.259885985 7.224779634 7.1056447 7.124354672 7.783534496 7.481631218 7.664268635 7.929124682 150010092 ArsC Metal Resistance Arsenic Parabacteroides distasonis ATCC 8503 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides distasonis; 7.293584558 7.085288676 7.19598839 149177296 glnA Stress Nitrogen limitation Planctomyces maris DSM 8797 7.98696788 8.019951147 7.110506466 7.145473451 258570505 AceA Carbon cycling Carbon degradation others Uncinocarpus reesii 1704 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 7.683012767 7.52049994 7.54972733 7.219775067 7.717638585 8.062212133 7.763075997 7.428487301 7.556329446 90195276 nhh Organic Remediation Aromatics Nitoaromatics Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.6488489 8.555814151 8.486275993 8.300640094 8.531224452 8.427069141 8.767034385 8.4566099 147676615 ctsR Stress Protein stress Pelotomaculum thermopropionicum SI superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Pelotomaculum;species:Pelotomaculum thermopropionicum; 8.032035653 8.276548162 7.654367117 7.73789483 8.217061752 8.559868912 7.597457531 8.561087407 7.840751963 8.064838 153159 amyA Carbon cycling Carbon degradation Starch Streptomyces venezuelae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7.907405948 8.144140831 7.864847967 8.00702114 7.601001707 7.550694989 8.120485932 7.900232384 8.000168145 7.892996407 8.130621073 219678850 glnA Stress Nitrogen limitation gamma proteobacterium NOR51-B 8.108733982 8.06345228 7.141721355 7.626365178 7.649557093 7.784412182 6.64099155 8.042384175 7.209171306 7.211248716 7.416207719 146401287 glycosyl_transferase_EPS Bioleaching EPS Acidiphilium cryptum JF-5 8.046603497 8.115708518 7.905677162 8.051914542 8.176511433 7.656835396 7.819779851 8.146343384 7.552690051 8.115890786 7.679128699 194292224 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 8.312926569 8.27867616 8.440017003 8.117320785 7.806951846 8.311115212 7.974610935 8.232112343 7.806337131 7.719947535 7.758043749 89053725 atzB Organic Remediation Herbicides related compound Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 6.969269984 6.854405042 6.903052684 7.227535099 37726849 dsrA Sulphur sulfite reductase uncultured prokaryote 8.237492055 8.137072014 8.225038275 8.554306765 8.333687641 7.909675578 8.615778366 8.337352532 8.196392561 8.042685247 8.443779234 224803028 pcc Carbon cycling Carbon fixation Opitutaceae bacterium TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 7.563046014 7.737299906 7.8445713 7.758129834 8.107887262 8.04661877 8.09241188 7.659504063 218549937 nplT Carbon cycling Carbon degradation Starch Escherichia fergusonii ATCC 35469 8.289188293 8.298428006 8.013989486 7.888198669 7.686728113 7.903817055 8.056169348 8.025356244 8.103584275 7.934801622 7.851488477 116700520 dsrA Sulphur sulfite reductase Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 7.98002971 7.895272949 7.733711689 7.800931894 8.235019573 7.886431725 8.150998818 7.795015701 8.118875508 192360117 ArsC Metal Resistance Arsenic Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 7.413095087 7.364906856 7.558811439 224949074 sigma_70 Stress Sigma factors Clostridium methylpentosum DSM 5476 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium methylpentosum; 8.005938124 8.320180967 7.76904856 7.499719976 7.486643186 7.30573833 7.950237756 7.436141663 7.575123085 71369384 CopA Metal Resistance Copper Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.350452147 8.30206548 8.334769167 8.208558817 8.451410714 8.408646698 8.317138632 8.484631324 7.772499215 219993443 ahpC Stress Oxygen stress Halothermothrix orenii H 168 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Halanaerobiales;family:Halanaerobiaceae;genus:Halothermothrix;species:Halothermothrix orenii; 8.118495718 8.422004919 7.419172089 7.254261678 7.622958676 7.158180253 6.71828501 7.731715158 7.263583562 7.067820998 7.52437401 171911085 pstB Stress Phosphate limitation Verrucomicrobium spinosum DSM 4136 7.584740946 7.577900833 7.713538665 7.739158592 7.789007586 7.874409485 7.71257655 7.658907306 7.52224062 145701635 glnA Stress Nitrogen limitation Metallosphaera sedula DSM 5348 7.020580079 6.934779836 7.112305989 133738387 sigma_38 Stress Sigma factors Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 8.305481275 8.310358323 7.846911698 7.471681637 7.2374652 7.500605483 7.766029785 7.493350541 7.685381467 28900726 Arylest Organic Remediation Aromatics Other aromatics Vibrio parahaemolyticus RIMD 2210633 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 8.124317337 8.205776712 8.429413822 8.711294645 8.513973179 7.912890094 8.617205844 8.067597571 8.419073628 8.20139997 8.488159526 197209502 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.517639079 7.590603517 7.328933561 7.481667028 7.916917326 153832734 pilin virulence pilin Vibrio harveyi HY01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 8.063443505 8.031802941 7.259582431 7.475718786 7.306193176 6.781965732 119369918 gyrB other category gyrB uncultured bacterium superkingdom:Bacteria; 7.624130353 7.616366147 7.85874774 7.956587731 7.85690803 8.298607766 7.998628446 8.081589678 8.263566192 251774068 pcc Carbon cycling Carbon fixation Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 7.622970679 7.843933116 7.844483506 7.470954039 8.002876822 7.820498069 7.799285873 7.997505133 283439430 sigma_24 Stress Sigma factors Pirellula staleyi DSM 6068 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Pirellula;species:Pirellula staleyi; 8.562848083 8.11369192 8.558230348 9.032677517 8.58057843 8.654610442 8.279343077 8.446418369 63029761 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.526311609 8.494898749 8.50887477 8.797293496 9.061664054 9.148123154 9.227986561 9.145208214 9.335255645 9.421120965 9.267783033 214042273 grpE Stress Heat shock Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.91658853 8.469050529 7.180571775 7.059037946 7.391703619 7.095344713 6.825708769 7.810830464 7.282808872 7.019057795 7.302728177 254476185 sox Sulphur Sulphur oxidation Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8.061921316 8.034319683 7.529365578 7.591343812 7.68252709 8.117099361 7.388021076 7.820180218 7.394174643 7.468557082 7.227298632 184195160 katE Stress Oxygen stress Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.167794538 8.206564801 7.688213238 7.862660129 8.10758617 7.825528228 7.710314248 8.204607454 7.78033586 8.133129617 7.860212791 115421723 CopA Metal Resistance Copper Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 8.382317929 8.367092135 8.285816225 8.414659488 8.137586358 8.447442635 8.535427342 8.38981459 8.512621393 8.431329983 8.092263981 71383949 nasA Nitrogen Assimilatory N reduction uncultured bacterium superkingdom:Bacteria; 8.223188984 8.287900745 7.742096881 7.274668897 7.858171299 7.581370287 7.361617168 7.573091562 7.495670952 7.579191848 256577271 dsrB Sulphur sulfite reductase Desulfomicrobium baculatum DSM 4028 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfomicrobiaceae;genus:Desulfomicrobium;species:Desulfomicrobium baculatum; 8.363507414 8.738117693 8.447503028 8.410330898 8.200356099 8.514859702 8.820888729 8.454697437 8.964541065 8.579457024 8.575080336 10644698 gyrB other category gyrB Brachyspira hyodysenteriae superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Brachyspiraceae;genus:Brachyspira; 7.0296398 7.217334516 7.243009638 6.831076597 7.437372562 221532705 sigma_24 Stress Sigma factors Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 7.545092069 7.726202047 7.847756224 8.191672496 7.497702515 8.064954356 7.434496651 7.900610829 7.935237385 226726363 sox Sulphur Sulphur oxidation uncultured bacterium superkingdom:Bacteria; 7.6220978 8.220693267 7.318283617 6.936871176 7.23599676 7.60056267 7.107844209 7.079330506 7.088258542 218667876 SMR_antibiotics Antibiotic resistance transporter Acidithiobacillus ferrooxidans ATCC 23270 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 6.819982188 7.531590801 134142921 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 8.217169256 8.233195372 8.004448658 8.083049852 8.471326427 7.974256023 8.484840126 8.427436771 8.379429392 7.840753355 22299223 ppx Phosphorus Phosphorus utilization Thermosynechococcus elongatus BP-1 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Thermosynechococcus;species:Thermosynechococcus elongatus; 8.248389485 8.019137021 7.634828162 7.699400765 8.464938688 8.521168773 8.21425392 8.006223956 8.262611257 8.458397756 3426122 nahA Organic Remediation Aromatics Polycyclic aromatics Sphingomonas sp. 7.387937303 7.355379475 7.44501297 7.942847982 7.377181808 7.584864811 7.546966122 7.383562467 7.261153696 145702065 AceB Carbon cycling Carbon degradation others Metallosphaera sedula DSM 5348 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Metallosphaera;species:Metallosphaera sedula; 7.218895369 7.141998218 7.226170634 7.016303228 7.603172244 7.069838362 6.955010505 218782130 dsrB Sulphur sulfite reductase Desulfatibacillum alkenivorans AK-01 7.410986629 7.306711936 7.077070682 7.065417523 6.698858534 7.579512663 6.921562505 6.981075801 6.968963505 218220999 ppx Phosphorus Phosphorus utilization Mitsuokella multacida DSM 20544 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Mitsuokella;species:Mitsuokella multacida; 8.21963421 7.980224702 7.760971281 8.046470756 7.972749204 8.158121642 8.094991423 7.714338562 7.57164857 85710402 AceB Carbon cycling Carbon degradation others Erythrobacter sp. NAP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 8.353510308 8.588056949 7.873705512 8.051261584 7.955383767 7.718075011 7.85753242 7.854481827 7.894108023 7.83585238 8.17298939 60475994 rubisco Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.349218949 8.647048121 8.214477736 8.634970591 8.469188778 8.28712673 8.091196252 7.988380956 255063107 phoB Stress Phosphate limitation Nitrosomonas sp. AL212 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 8.673892194 8.715825995 8.564083112 8.636119798 8.299997426 7.764510536 7.67834623 7.901181121 8.203305439 8.059677101 260935546 pstA Stress Phosphate limitation Vibrio orientalis CIP 102891 7.6971917 7.731297914 7.550664012 7.638574565 7.990745282 7.335511207 7.65487253 50119447 phn Organic Remediation Herbicides related compound Erwinia carotovora subsp. atroseptica SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 7.691470904 8.002551611 7.711635903 7.746112235 8.024643924 7.860369419 7.776901548 8.114526422 139478503 mer Metal Resistance Mercury uncultured soil bacterium superkingdom:Bacteria; 7.689820874 8.523097708 8.479629584 8.666307281 8.49330425 8.437817862 8.080788627 8.231243969 8.027587817 221156620 sigma_70 Stress Sigma factors Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 7.91404164 7.969416083 8.126590582 7.788885842 8.049737452 8.280796225 8.09705984 8.101356441 171089977 ArsC Metal Resistance Arsenic Geobacillus sp. WCH70 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.017274692 8.090825564 7.119345876 7.028460292 124514726 LPS_heptosyltransferase_EPS Bioleaching EPS Leptospirillum sp. Group II UBA 8.454322025 8.369436803 8.283856095 8.24522585 8.293664428 8.274623248 8.176400417 8.053088781 7.681955253 197783213 exochitinase Carbon cycling Carbon degradation Chitin Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 8.354150729 7.992797896 8.586371211 8.592440021 8.566269546 7.975231607 8.668873578 8.426972829 8.633739021 8.483356893 8.280693702 183173841 adpB Organic Remediation Pesticides related compound Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 7.571736849 7.318140819 7.340301165 7.136383003 7.088217305 7.525741961 162149105 sigma_70 Stress Sigma factors Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 8.228622861 8.184638732 7.500025032 7.593231894 7.651244384 7.560932929 7.825429108 7.330158115 148243371 hrcA Stress Heat shock Synechococcus sp. RCC307 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.71582854 8.362856009 7.809360757 8.024539084 8.640388151 8.840266142 8.39818096 8.56958468 8.31903165 8.286313709 8.727692761 5103436 pstA Stress Phosphate limitation Aeropyrum pernix K1 7.398519598 7.499175924 7.396271866 6.832403674 7.328051763 7.275428721 7.342560517 7.749821454 119698615 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.643893319 8.308784638 7.533996507 7.766422747 8.458049527 8.807420206 8.197383002 8.449390961 7.787865088 8.111560115 7.984722099 223586018 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.699933939 7.572727817 7.603479488 7.508919235 7.820307979 7.526483198 7.361444333 7.601112721 118698615 rubisco Carbon cycling Carbon fixation Burkholderia ambifaria MC40-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 8.403366256 8.584218597 7.960916385 7.999175363 8.575432719 8.422041577 8.157261893 8.378544523 8.026971623 8.253667203 8.381834833 108760102 sigma_24 Stress Sigma factors Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 7.969455174 8.084131644 7.410654611 7.235102202 7.358411889 7.818353611 7.274233474 7.36519008 7.254404734 7.627439994 170720005 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.903868415 8.211898843 8.290126188 8.466156225 8.073545498 8.17070499 7.596962183 7.538250428 7.460080742 157917566 exochitinase Carbon cycling Carbon degradation Chitin Salinispora arenicola CNS-205 7.813456913 7.765703889 7.585889481 7.645741102 7.814984601 8.146371272 7.826299373 7.673440073 7.878759887 133738758 CopA Metal Resistance Copper Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 8.297921287 8.548925925 7.886781046 7.727886643 7.796376286 7.943421971 7.6125233 8.279629667 7.60452303 7.885068178 7.743287283 142054 nifH Nitrogen Nitrogen fixation uncultured marine bacterium superkingdom:Bacteria; 8.098721983 8.194574686 7.403528341 7.235655016 7.406888923 7.295465116 7.936769016 7.324555704 7.386034556 7.341689635 118757826 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 7.407178031 7.405229963 7.297069407 7.562414949 7.354927721 7.631120086 7.478528232 7.548194248 77963308 ArsC Metal Resistance Arsenic Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 7.515549577 7.394156099 7.435746416 7.340083993 7.479966343 7.373764719 7.367434533 39918803 gyrB other category gyrB Pseudomonas stutzeri superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.734539418 8.165028944 7.740002876 7.715772558 7.535315338 7.611020814 7.426193483 8.007366749 7.514135025 7.402993865 7.268817869 91697326 metC Metal Resistance Mercury Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 8.204257718 8.198634472 8.340282968 8.324510622 8.405063915 8.396235519 8.822805087 8.809021553 8.641063363 163782530 fnr Stress Oxygen stress Hydrogenivirga sp. 128-5-R1-1 8.294862652 8.761106889 7.921881176 7.729275963 7.599641803 7.482036052 7.164081494 7.806919091 83853290 B_lactamase Antibiotic resistance Beta-lactamases Oceanicaulis alexandrii HTCC2633 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis;species:Oceanicaulis alexandrii; 6.783221131 7.300427088 227238296 ahpC Stress Oxygen stress Mobiluncus curtisii ATCC 43063 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus curtisii; 8.298652975 8.250351251 7.851811119 7.910743665 7.677943937 7.805402339 7.823238528 8.265503042 7.816453299 7.537628325 7.911887311 242821112 MFS_antibiotic Antibiotic resistance transporter Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 8.004686874 8.033209353 7.406292297 7.126888803 33413585 endochitinase Carbon cycling Carbon degradation Chitin Trichoderma atroviride superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Trichoderma; 8.495340175 8.175115382 8.355595641 8.052166029 8.191059994 8.341262013 8.28180986 8.374331434 8.404571055 158304027 ArsC Metal Resistance Arsenic Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;genus:Acaryochloris;species:Acaryochloris marina; 8.609775107 8.322889666 7.560209549 7.995862299 8.302879007 8.414390407 7.313549057 8.687721899 7.938868169 7.943954645 8.164769582 78221552 narJ Stress Oxygen limitation Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 8.000085307 8.147071526 7.415742961 7.209697814 7.729969399 7.68609485 7.360088861 8.07197087 7.486053455 7.390315158 7.601697063 158521938 pstA Stress Phosphate limitation Desulfococcus oleovorans Hxd3 8.401661304 8.334028182 9.168961645 9.072105048 9.049512762 9.165405304 9.151113504 9.035775438 8.81488473 83749259 catB Organic Remediation Aromatics BTEX and related aromatics Ralstonia solanacearum UW551 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 7.402573402 7.587889334 7.894749567 7.484311755 8.060100374 7.443998897 7.565419681 7.401223438 114330060 CopA Metal Resistance Copper Nitrosomonas eutropha C71 7.83309327 7.717714152 7.647854342 7.571602833 7.516308736 7.819765698 165880019 exoglucanase Carbon cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.12983893 6.862683117 78707341 gyrB other category gyrB Acholeplasma brassicae 7.293990263 7.436899855 7.414304288 6.983342632 6.922417704 7.919525633 7.139049537 7.475409358 261196714 vdh Carbon cycling Carbon degradation Others Ajellomyces dermatitidis SLH14081 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 8.354882143 8.28780735 8.129980745 8.129941965 8.269757802 8.338042292 8.084941983 8.45931432 7.841328261 7.904022602 7.745581168 146343127 catB Organic Remediation Aromatics BTEX and related aromatics Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.15467688 8.329241262 7.725767636 7.493192184 7.612161613 7.857104485 7.38277671 8.070137212 7.72458216 7.792736002 188533080 proX Stress Osmotic stress Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 6.969007081 7.282813049 196200199 amyA Carbon cycling Carbon degradation Starch Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.775270602 8.02898422 7.542734478 7.302360049 7.349969487 6.866959828 7.0986238 7.758187387 7.392510432 7.117406834 7.429100758 28920933 endoglucanase Carbon cycling Carbon degradation Cellulose Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 7.296690274 7.359937668 7.611534709 6.911135938 7.575167489 7.160760876 7.74527782 157804768 APS_AprB Sulphur adenylylsulfate reductase Thiobacillus thioparus superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 8.45437498 8.472688164 8.212389158 8.329803392 8.125470594 8.181812388 8.104165264 8.018088527 8.382021837 8.347761831 8.20965619 241662903 AceB Carbon cycling Carbon degradation others Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.205940409 8.021607968 7.669675636 7.866233098 8.181941091 7.90594238 7.848222855 7.9335379 7.904633555 255505514 nplT Carbon cycling Carbon degradation Starch Bryantella formatexigens DSM 14469 10.29006903 10.32209235 9.779229196 9.458539908 9.263433284 9.531996042 9.801935482 70730495 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.591412421 7.702131969 7.953624061 8.247711936 7.706045528 8.421055214 7.610476564 7.753092515 7.480064401 39937835 pstB Stress Phosphate limitation Rhodopseudomonas palustris CGA009 8.26198155 8.147656636 7.457863159 7.729341266 7.781048553 7.72630219 7.275887492 8.11806018 7.513719146 7.391138894 7.728660325 169293 mnp Carbon cycling Carbon degradation Lignin Phanerochaete chrysosporium 7.326735934 7.174315304 7.283733283 6.87640649 6.818139606 7.508142672 7.078191281 7.079991032 7.104600818 160945268 CopA Metal Resistance Copper Faecalibacterium prausnitzii M21/2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Faecalibacterium;species:Faecalibacterium prausnitzii; 7.507764778 7.663672055 7.621265881 7.755962906 7.581597989 7.774897521 7.671348679 7.783231143 7.718322309 256795358 sigma_24 Stress Sigma factors Kangiella koreensis DSM 16069 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Kangiella;species:Kangiella koreensis; 7.421500399 7.236941885 7.010077939 7.235967707 7.479564564 7.385973459 7.306847182 7.197236229 221734661 ppx Phosphorus Phosphorus utilization Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 7.788731966 7.784071313 7.730476105 7.643575754 7.93637238 7.645628042 8.069641002 8.123206857 7.676285678 115422024 ppx Phosphorus Phosphorus utilization Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 7.431872064 7.419171388 7.432758322 7.419400546 6.966397135 197712148 Catechol Organic Remediation Aromatics Other aromatics Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 7.832575815 7.756158707 7.503352526 7.612383732 7.616940217 7.715966298 7.811176711 115518788 fnr Stress Oxygen stress Rhodopseudomonas palustris BisA53 8.520765947 8.638239425 8.021746609 7.992220847 7.770845124 7.901498547 7.749913576 7.753752917 7.487958818 8.019828265 117919359 katE Stress Oxygen stress Shewanella sp. ANA-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 8.106128247 8.258259125 8.051402927 8.101361909 7.938364011 8.382763082 7.996794237 8.241578926 8.149361648 8.237268121 7.774852557 177672538 ppx Phosphorus Phosphorus utilization Micrococcus luteus NCTC 2665 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus;species:Micrococcus luteus; 7.879018992 8.311519314 8.366698676 8.31616286 8.342467097 8.255634684 8.453121052 8.574782565 8.443575286 46101464 nagG Organic Remediation Aromatics Aromatic carboxylic acid Ustilago maydis 521 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Ustilaginomycetes;order:Ustilaginales;family:Ustilaginaceae;genus:Ustilago;species:Ustilago maydis; 8.045867679 7.967705987 7.567209887 8.126318424 7.841297315 7.816804778 8.296767011 8.24674224 8.407014196 8.129542261 8.189064302 124294977 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.891513273 7.569066629 7.745105657 8.058362916 7.76414113 89099176 pstB Stress Phosphate limitation Bacillus sp. NRRL B-14911 7.823791398 8.41012123 7.42433709 7.583069426 7.194736703 6.88503513 7.488791469 7.121339848 6.920879467 7.326848995 91795187 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.743186732 7.322244964 7.841764977 7.827056398 7.622825428 8.01292759 7.207468768 7.578590208 7.370340258 126105529 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus 7.179100101 7.157108985 84367342 sigma_24 Stress Sigma factors Xanthomonas oryzae pv. oryzae MAFF 311018 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 7.949712706 7.967602404 7.873322641 7.945074812 8.190131707 7.982094812 8.14736656 7.841302465 7.818814944 46981128 nirS Nitrogen Denitrification Pseudomonas sp. NBP39 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.076399315 8.048326502 7.128062387 7.164663774 7.42864526 7.3948358 6.704341623 7.777411557 7.588409136 7.140134907 7.365102898 163741241 ChrA Metal Resistance Chromium Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 8.306063835 8.4234955 8.401859312 7.716780979 8.261326485 7.988167694 8.164163619 8.661885868 7.764862188 145218230 TerC Metal Resistance Tellurium Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.066194494 8.43822266 7.695140498 7.591951133 7.44394632 6.977859893 6.894097782 7.349166616 7.11457892 7.643009364 77164343 alkK Organic Remediation Others Nitrosococcus oceani ATCC 19707 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 7.180159073 7.02718043 7.222136282 7.454305397 6.965841589 7.562729117 7.480572374 7.315765403 7.488382426 223585844 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.541567071 8.495741949 7.988535478 8.466997972 8.704675296 8.626823071 8.618031891 8.73583929 8.848745826 8.675774067 8.627121608 58428287 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Xanthomonas oryzae pv. oryzae KACC10331 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 7.499943614 7.168394518 7.555404319 7.383047899 7.201167271 7.90022803 7.705572751 7.625146023 148238916 alkK Organic Remediation Others Synechococcus sp. WH 7803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.026238313 8.133540506 8.454894023 8.743146041 8.523316376 8.59882735 8.579987299 8.41608767 227162149 AceB Carbon cycling Carbon degradation others Proteus mirabilis ATCC 29906 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 8.093175783 8.302342235 213953437 SMR_antibiotics Antibiotic resistance transporter Capnocytophaga sputigena Capno superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga sputigena; 8.190456779 8.548622177 7.593315833 7.578735566 7.68890927 7.312677606 7.515948707 7.719478148 7.488749387 7.298044538 7.877081428 187727497 CopA Metal Resistance Copper Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 7.830587476 7.558911341 7.751128394 7.68315889 7.546632372 8.244837629 7.605003734 7.521846278 7.680164865 163735051 glnA Stress Nitrogen limitation Roseobacter litoralis Och 149 7.004953312 7.659110741 7.637922286 7.498577338 7.456359968 146401554 sigma_70 Stress Sigma factors Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 8.226221482 8.015097222 7.593054859 7.555701598 7.666807874 7.413530823 7.471157291 7.827170923 7.544813582 7.444285555 7.570721753 89343846 proO Organic Remediation Aromatics Other aromatics Rhodoferax ferrireducens DSM 15236 7.847854738 8.023126696 7.994305319 7.834966172 7.811938296 8.084469371 8.130514045 8.206149258 7.825812664 150395239 hrcA Stress Heat shock Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 8.426728506 8.259241908 7.386252326 7.347545612 7.855402429 8.09371838 7.540394802 8.054662903 7.830581612 7.949627144 7.693880695 114561460 cytochrome Energy process Energy process Shewanella frigidimarina NCIMB 400 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella frigidimarina; 7.467856944 7.770170524 7.801925314 7.0191995 7.74232902 7.840718414 7.440906779 7.858765036 7.7027623 270513544 B_lactamase_C Antibiotic resistance Beta-lactamases Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 7.999745337 8.207689643 7.826491442 7.802928865 7.738381563 7.785445195 7.712932384 7.806111494 8.124038798 8.020751076 7.990334514 117647806 cellobiase Carbon cycling Carbon degradation Cellulose Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 7.737091801 7.777789649 8.020576481 7.889427725 7.668689939 7.824947948 8.16077632 7.978768108 7.958505662 209959077 alkK Organic Remediation Others Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 8.210998748 8.16331587 7.929648258 8.346180143 8.774387993 8.765478141 8.784914186 8.881070058 40736916 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 6.902664985 7.099490783 7.155578506 6.910906461 7.504544595 55978115 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.572228701 8.585136222 7.991437897 7.705061602 8.037440364 7.575440669 7.490741356 7.854899291 7.801773721 8.15508086 159880797 ahpC Stress Oxygen stress Hydrogenivirga sp. 128-5-R1-1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenivirga; 7.268755066 6.968153514 148253943 alkK Organic Remediation Others Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.753884558 8.014064447 8.310697855 8.055110327 7.878398028 7.964915252 8.10743859 7.788942691 218525536 fnr Stress Oxygen stress Methylobacterium chloromethanicum CM4 8.221525522 8.184592346 7.868738284 7.770907933 7.856970485 8.166799412 7.953286123 7.942204289 7.236663487 266629513 fnr Stress Oxygen stress Caulobacter segnis ATCC 21756 8.124417416 8.075931695 7.908497504 7.547522228 8.277361876 7.908280192 8.282825515 7.76536294 7.834437305 7.63188817 60326762 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.693781727 7.554365727 8.287336139 8.518868843 7.895466127 8.409721551 7.938260427 8.011989909 7.883887944 89274947 bphC Organic Remediation Aromatics Polycyclic aromatics Rhodococcus sp. R04 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.072939045 8.154141414 7.617200894 7.643694533 7.926598339 8.153502349 7.909344613 8.162780449 7.786421183 7.615048081 7.804928792 255253968 sigma_24 Stress Sigma factors Thermoanaerobacter italicus Ab9 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Thermoanaerobacter;species:Thermoanaerobacter italicus; 7.98730076 7.907493269 6.98808232 7.530250981 145702225 Blue_copper_protein Bioleaching Sulphur Metallosphaera sedula DSM 5348 7.719549211 7.66424717 7.625224113 7.670069017 7.653515627 7.78824476 7.92826668 7.497517243 7.409133475 91802076 CadA Metal Resistance Cadmium Nitrobacter hamburgensis X14 7.919699966 7.828707257 7.876340938 7.593943838 8.008745569 7.834721823 7.953051558 7.892319064 7.489579716 116490131 gyrB other category gyrB Oenococcus oeni PSU-1 6.897081928 7.118703075 7.081489812 7.155648941 7.719274417 7.173041546 7.247572539 7.455920586 110668350 ArsA Metal Resistance Arsenic Haloquadratum walsbyi DSM 16790 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloquadratum;species:Haloquadratum walsbyi; 8.174194189 8.69003244 8.246996298 8.182558475 7.94599613 7.847447237 8.784269264 8.44153459 8.60236775 8.151235292 8.526189764 163855735 nagG Organic Remediation Aromatics Aromatic carboxylic acid Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 7.493901418 7.472141509 7.622353632 7.320226922 7.433798262 7.590771146 7.482562565 7.489256605 114569303 pimF Organic Remediation Aromatics Aromatic carboxylic acid Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 7.886272806 8.155954399 7.975815991 7.671033919 7.883404852 7.751812988 8.042879349 8.079892311 7.68563139 7.713563464 7.859826442 67088759 ArsC Metal Resistance Arsenic Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 7.305938073 8.004272971 8.287172441 7.826951945 8.1942343 8.173166154 8.012831394 8.103182183 7.89956594 196245396 nitro Organic Remediation Others Cyanothece sp. PCC 8802 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.054880339 6.952679063 7.21841213 158139949 TerZ Metal Resistance Tellurium Alkaliphilus oremlandii OhILAs 7.687813581 8.275056945 7.106272005 6.970894504 34732940 scaffold Bacteria phage STRUCTURAL Aeromonas phage 44RR2.8t order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 8.252527016 8.149147661 7.606076743 7.832752401 8.456022982 8.470247683 8.268681308 8.437744878 8.217972751 8.654677693 170936314 nagG Organic Remediation Aromatics Aromatic carboxylic acid Podospora anserina superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora; 7.558239637 7.612590057 7.451789406 7.074441318 7.434770428 7.730506185 7.401545903 7.281701033 7.57698454 118170987 bphC Organic Remediation Aromatics Polycyclic aromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 7.593234707 7.976363452 8.220408949 8.184989904 8.025208853 8.288122081 8.13245551 8.011764913 7.558739791 160896409 alkH Organic Remediation Other Hydrocarbons Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.308840586 8.292434881 7.810876107 7.545230302 7.688814397 7.306829587 7.281416419 7.927780125 7.688244174 7.472062735 7.716221302 187477137 CopA Metal Resistance Copper Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 8.361101411 8.256344231 8.099722727 8.246253192 8.56380746 8.796069765 8.807184658 8.444644841 8.768036535 8.857499843 8.904633562 119714389 alkB Organic Remediation Other Hydrocarbons Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.057262976 8.207267497 8.137271954 8.395284998 8.285983524 8.008976738 8.522280808 7.961798346 119774350 cytochrome Energy process Energy process Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 7.223036941 7.595509566 7.356961563 7.51808957 7.521677457 7.238287472 7.42187523 46850264 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.446039082 7.218686121 7.369634913 7.606882083 7.335739018 7.661532109 7.452341016 7.305255853 118570137 sigma_24 Stress Sigma factors Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 7.73981312 7.864989612 7.611990921 7.273719913 7.456728409 7.78963331 7.539348403 7.609056889 7.526482999 260593204 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Prevotella veroralis F0319 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella veroralis; 8.130692191 8.57100919 8.477013352 8.283024061 8.273383183 7.764767364 8.477044785 8.220818755 8.303160677 8.266530361 8.076795696 251845783 ara Carbon cycling Carbon degradation Hemicellulose Paenibacillus sp. oral taxon 786 str. D14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 7.606342734 7.650853481 7.645149434 7.416897673 8.055176764 7.68706566 8.379954785 77383868 MFS_antibiotic Antibiotic resistance transporter Pseudomonas fluorescens Pf0-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.642279658 7.921259867 8.145404469 8.224792183 8.387103658 7.947601334 8.557756517 8.484606035 8.572641151 116812181 nifH Nitrogen Nitrogen fixation Clostridium sp. Sukashi-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 7.137768588 7.096803155 6.658504037 7.295409764 146190990 tfdA Organic Remediation Aromatics Chlorinated aromatics Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.038763028 8.222397737 7.894942374 8.191020096 8.158123465 8.143949434 8.415780823 8.293422536 8.550153888 8.558976081 8.563863987 114763537 ureC Nitrogen Ammonification Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 9.350293203 9.368064298 8.599854433 8.641449676 8.632615042 8.807612055 8.586522126 8.835796522 8.757800915 8.895298528 8.828107255 127514154 phoA Stress Phosphate limitation Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 8.864945812 8.744131719 8.745415862 8.986191468 8.624846231 8.803108821 9.352190038 8.823038522 8.703223241 152066463 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Beggiatoa sp. PS superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Beggiatoa; 7.236334533 7.503650562 161380355 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 8.04401488 7.943901964 7.669920878 7.594800012 7.667409224 7.667347542 7.624505237 8.069365647 7.853192692 7.921139258 7.736098507 157913489 fnr Stress Oxygen stress Dinoroseobacter shibae DFL 12 8.228841439 8.317851524 8.162044049 7.515479829 8.17268362 8.045384251 8.142272943 8.257523358 8.373608602 46307967 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.024327366 7.640845516 7.548373852 7.687706599 7.716780327 7.725534548 7.845845936 7.392381075 154686757 pstA Stress Phosphate limitation Bacillus amyloliquefaciens FZB42 7.591902358 7.706905835 7.743812688 7.814673969 7.457482995 7.749333142 7.417101591 7.739648438 7.46211885 87301479 ALN Organic Remediation Others Synechococcus sp. WH 5701 7.30341363 7.484756419 7.437641525 7.380338062 6.950514341 74038418 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.734174718 8.125380823 7.81341565 8.066078151 8.229748525 7.860093617 8.385052752 7.566984708 163746718 sox Sulphur Sulphur oxidation Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 8.211025863 8.238005632 7.892176643 7.901133856 8.436440864 8.557711382 8.450300043 8.515542354 8.366437518 8.583810647 91693269 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.918914091 8.19646369 7.34652403 7.246251905 7.121002969 7.192360029 7.68930332 109290324 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.158778129 7.50657263 6.884055431 6.882440401 7.383004406 7.352677547 7.492134479 211905493 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.129859323 8.347171861 8.106335116 7.531912895 8.340972826 8.166324419 8.051516411 7.852646458 7.704179497 224025190 cda Carbon cycling Carbon degradation Starch Bacteroides coprophilus DSM 18228 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides coprophilus; 7.774092419 7.489203013 7.688934942 7.77425082 7.588781636 7.577351811 7.702977991 7.659788873 8.12103476 119496895 iro virulence Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 7.86099743 7.793387203 7.615508399 7.519124812 7.867822145 7.896377598 7.810724826 7.603265494 7.791597521 158448660 cda Carbon cycling Carbon degradation Starch Coprococcus eutactus ATCC 27759 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Coprococcus;species:Coprococcus eutactus; 7.068545621 7.232303714 7.559656291 7.786964597 6.930597179 8.02800221 7.15973962 7.193104734 7.334556876 145702396 ABC_transporter_I Bioleaching other category Metallosphaera sedula DSM 5348 7.160410403 6.944151447 7.503659001 7.664377119 7.303513845 7.38329629 7.499852636 7.550067192 109648488 bphF1 Organic Remediation Aromatics Polycyclic aromatics Desulfitobacterium hafniense DCB-2 7.733902351 7.860212254 19552303 HBH Organic Remediation Aromatics BTEX and related aromatics Corynebacterium glutamicum ATCC 13032 8.24047261 8.409046393 8.731465305 8.565099971 8.416327945 8.215135137 8.379064152 8.38404064 8.29574544 8.181676126 8.043062539 145596555 linB Organic Remediation Pesticides related compound Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 7.853135962 7.729520074 8.481779066 7.774263427 7.87539892 7.937367997 8.034169282 89332519 nrfA Nitrogen Dissimilatory N reduction Desulfitobacterium hafniense Y51 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 7.983675482 7.918539248 8.357555841 8.272393195 7.55098838 8.157450258 7.921463221 8.173258988 7.778266257 118646085 tfdA Organic Remediation Aromatics Chlorinated aromatics Burkholderia ambifaria MC40-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 7.873827828 8.092340644 7.723610153 7.579339773 7.190452721 7.281095564 7.716963509 7.772968696 7.451621966 7.243305935 7.646170491 115422350 catechol_B Organic Remediation Aromatics Other aromatics Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 8.391624475 8.529628259 8.098341869 8.685089845 8.250316567 8.482501156 8.259137713 7.871630346 150397583 ureC Nitrogen Ammonification Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 8.418044539 8.312071372 8.38277026 8.407366398 8.657413016 8.153905012 8.474119478 8.393347306 8.700125668 8.877519906 8.389330389 123978711 pcc Carbon cycling Carbon fixation Hyperthermus butylicus DSM 5456 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Pyrodictiaceae;genus:Hyperthermus;species:Hyperthermus butylicus; 8.410911948 7.959290118 7.669760089 8.264539038 8.21488288 8.08583055 7.971977177 7.707795992 7.711517779 83574975 sigma_24 Stress Sigma factors Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 8.137528538 8.198997697 8.666642809 8.1319336 8.582030831 8.236014254 8.377502652 8.512075476 8.348091731 198264911 phn Organic Remediation Herbicides related compound Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 8.432863392 8.51530519 8.189865389 8.053099849 7.827805806 8.17850565 7.989285664 8.152546933 7.814025319 7.904942487 7.97781093 124875211 linB Organic Remediation Pesticides related compound Burkholderia cenocepacia PC184 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 8.086729662 8.281405491 8.242045871 8.017896562 7.901753221 8.105373613 8.365179063 8.120341602 8.17529079 7.98921332 8.075845105 99081698 ppx Phosphorus Phosphorus utilization Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.553331119 7.221098472 7.635746236 7.097244355 7.245699628 7.68340975 7.562698392 7.493139891 7.597756048 116202789 xylanase Carbon cycling Carbon degradation Hemicellulose Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 7.5150215 7.484351824 7.123285444 7.882857037 7.908064449 7.606094802 7.512858941 7.466366244 63081978 nosZ Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 7.959303812 7.783036258 8.001457903 7.342280778 7.720224494 7.670634424 8.337355356 183600440 AceA Carbon cycling Carbon degradation others Providencia stuartii ATCC 25827 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia stuartii; 8.202607389 8.209295928 7.638639386 7.798580056 7.70267928 7.543375568 7.505024121 7.73966668 7.649940361 7.725466285 7.791227255 83634171 nosZ Nitrogen Denitrification Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 8.081071126 8.183718005 7.428987726 7.644877997 7.495375003 8.213009856 7.608099451 8.197887303 7.649145913 7.70995334 7.562120857 78221401 mer Metal Resistance Mercury Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 8.862062639 8.679203913 8.469141375 8.401060723 8.558177695 8.60685685 8.358720705 8.787326024 257464211 pstB Stress Phosphate limitation Fusobacterium sp. D12 6.823058943 7.141927868 88860516 endochitinase Carbon cycling Carbon degradation Chitin Pseudoalteromonas tunicata D2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas tunicata; 8.705958612 8.722102874 8.207293189 8.417681225 8.390246366 8.295391533 8.804011359 8.355216475 8.925462512 8.32480026 8.481825367 260063846 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.446745412 7.569758444 7.008780858 7.656996244 7.739903984 7.705944555 22776114 katE Stress Oxygen stress Oceanobacillus iheyensis HTE831 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Oceanobacillus;species:Oceanobacillus iheyensis; 7.281487333 7.060907348 7.30592043 7.041653733 6.606339216 84686646 phtA Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.630132942 7.297560072 7.846406146 8.040088239 7.523129672 7.733136616 7.743871873 171325525 SMR_antibiotics Antibiotic resistance transporter Geobacillus sp. WCH70 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.594057215 8.713754302 7.66704299 8.072297983 8.22550538 8.891827122 8.378776941 9.052980432 7.776089987 8.196508427 7.991380909 264673005 glnA Stress Nitrogen limitation Caulobacter segnis ATCC 21756 7.763576939 7.720535942 7.592653195 7.698859256 7.52884275 7.7170896 7.836654759 7.635729357 217979565 nhh Organic Remediation Aromatics Nitoaromatics Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 7.923318187 8.034345935 8.380208293 7.62661877 7.593715345 7.599966062 7.90281542 219676517 B_lactamase_C Antibiotic resistance Beta-lactamases gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.420222197 7.64664934 7.878803669 7.969316933 7.763318963 8.213594883 7.355331226 7.345513064 7.269183469 118430838 merP Metal Resistance Mercury Aeropyrum pernix K1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Aeropyrum;species:Aeropyrum pernix; 8.457937205 8.532415286 7.681334805 7.660596028 7.5590732 7.650199621 7.950005619 7.77123482 7.796558555 7.682282024 7.96084119 170744039 sigma_24 Stress Sigma factors Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 8.227639752 8.158938126 8.162011913 8.348233172 8.482241739 8.280321778 8.636244722 8.659429735 8.366006783 160917619 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.24640024 7.958654779 8.105922631 7.875961695 7.730461633 116754043 dnaK Stress Heat shock Methanosaeta thermophila PT 7.938351425 8.141934192 8.095499431 8.090309154 7.889487178 7.539969274 8.088124127 8.110019461 7.896985345 7.70578427 8.049424406 5911742 Xamo Organic Remediation Other Hydrocarbons Rhodococcus sp. AD45 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7.689594253 7.635905329 8.251400614 8.621765113 7.992579466 7.924347082 7.943875688 8.346302033 27351572 nmoA Organic Remediation Aromatics Nitoaromatics Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.709789987 7.781443405 8.433469801 8.803331345 8.424617293 8.709737988 8.620376777 8.815145593 144899359 oxyR Stress Oxygen stress Magnetospirillum gryphiswaldense MSR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 7.790268769 7.80398551 7.911915825 8.0509835 7.887401904 7.962552898 8.023788142 7.870662948 86137868 sigma_32 Stress Sigma factors Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.142419358 7.328490666 7.122762676 7.253655626 7.439485281 7.134574446 270263976 pilin virulence pilin Serratia odorifera 4Rx13 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia odorifera; 8.100117396 8.180465606 7.648582729 7.434686749 7.936355961 8.033046485 7.398941564 8.351008619 7.8332201 8.153075361 7.947546535 147886204 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 7.937848608 8.104043771 8.425547137 7.899540943 8.342747623 8.223649656 8.267582524 8.226038181 7.99099997 70983560 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 8.296189137 8.57619851 8.40062341 8.785057522 8.425203045 8.270028371 8.150665399 8.511798085 8.175607625 158109521 atzA Organic Remediation Herbicides related compound Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.535840356 8.460854139 7.73797715 7.482182785 7.691092022 7.830751841 7.327639093 7.773924866 7.369141156 7.439086396 7.75920714 163758644 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 8.175175838 7.799735945 7.389124995 7.388339509 7.45313871 7.716476817 7.232913901 7.348259976 7.306982939 29840119 clpC Stress Protein stress Chlamydophila caviae GPIC superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Chlamydiaceae;genus:Chlamydophila;species:Chlamydophila caviae; 7.629897832 7.290932781 7.339816908 7.787253986 7.258617275 7.331977249 115256369 linC Organic Remediation Pesticides related compound Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.57776315 7.629841903 7.414813563 7.123685724 7.394647151 7.753828176 7.403325872 7.371487468 7.586677141 124260167 ChrA Metal Resistance Chromium Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 8.009146161 7.808039067 7.780191289 7.510693013 7.50539255 7.901662751 7.565226559 7.522183392 7.334197107 119698563 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.353144073 7.299445375 8.014947511 7.70363373 7.34815169 7.834963546 7.662694688 7.417894916 7.632989943 260552117 ahpF Stress Oxygen stress Lactobacillus fermentum 28-3-CHN superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus fermentum; 7.555684549 7.554604208 7.474499766 6.996022748 6.974150557 7.390894895 7.06692941 7.024064577 118670769 tfdA Organic Remediation Aromatics Chlorinated aromatics Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.700320893 8.034097601 8.263101814 8.683447581 7.456402184 8.374066276 7.899052288 7.975866311 8.463857116 222451881 amyA Carbon cycling Carbon degradation Starch Halorubrum lacusprofundi ATCC 49239 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 8.707115997 9.036566959 8.267745461 8.133133649 8.400864863 7.984603248 8.251552302 8.462917559 8.22778141 8.413508099 259419180 SMR_antibiotics Antibiotic resistance transporter Silicibacter sp. TrichCH4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.969536958 8.058792407 6.813925073 7.449761354 6.805577726 7.051745788 212223935 ahpC Stress Oxygen stress Thermococcus onnurineus NA1 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus onnurineus; 7.578823599 7.212576513 7.43267978 7.578375472 76557139 nasA Nitrogen Assimilatory N reduction Natronomonas pharaonis DSM 2160 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natronomonas;species:Natronomonas pharaonis; 7.918453974 7.839057306 7.735770192 7.969669866 8.079482481 8.090393968 8.036953522 7.888477993 59479972 trzN Organic Remediation Herbicides related compound Vibrio fischeri ES114 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Vibrio fischeri; 8.530767427 8.85072074 8.115520536 8.142287343 8.167071127 7.849322766 8.016666453 8.289921246 8.535271584 8.597814867 8.377420018 219946586 fnr Stress Oxygen stress Methylobacterium nodulans ORS 2060 7.73436738 7.891896439 7.654986171 7.573372758 7.86920506 7.855561218 7.867175479 7.483382919 7.821108591 89053928 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 8.50276303 8.624835404 8.42176879 7.923718572 8.770009056 8.211082454 8.484807599 8.520046595 8.16990895 196226735 pstC Stress Phosphate limitation Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 7.832264756 8.119529076 8.137213185 7.762126872 8.581935557 7.86349538 8.297667476 8.452911464 8.01461064 71370771 glnA Stress Nitrogen limitation uncultured cyanobacterium 7.851883263 7.534942449 7.7990805 7.032536359 7.636162314 7.579234418 7.65209341 7.812249294 7.466180015 108802398 akbF Organic Remediation Aromatics BTEX and related aromatics Mycobacterium sp. MCS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.085444445 8.124482409 8.045750618 8.20430771 8.36821766 8.393142386 8.462796795 8.060026925 7.771574123 89513036 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.134232803 8.205624624 7.837684441 7.838861504 7.897576695 7.931692764 8.053167125 8.082189577 8.058548657 7.94767076 7.921027516 126665417 fnr Stress Oxygen stress Marinobacter sp. ELB17 7.728881593 7.700079616 7.591964077 7.830870374 7.665354152 89056702 pimF Organic Remediation Aromatics Aromatic carboxylic acid Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 8.118133237 8.241891588 7.565816275 7.739821108 7.985284153 7.905392305 7.598986474 8.386088634 7.834987005 7.888247434 7.724018299 94310960 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.2489286 8.460042168 7.876510644 8.097627678 8.254704352 8.058715015 8.730677359 8.291072338 8.697062827 8.502862629 8.22335327 218258147 sigma_24 Stress Sigma factors Parabacteroides johnsonii DSM 18315 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides johnsonii; 7.821873966 7.515714635 7.6114328 166860802 iro virulence Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 6.974674143 7.27919466 7.322776484 7.364178269 6.774907298 7.209303069 222084400 phn Organic Remediation Herbicides related compound Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.116611506 8.37773264 8.677899054 8.398002152 8.220619842 8.486747976 8.760183861 8.349755699 8.179594848 146277933 katE Stress Oxygen stress Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 7.411952028 7.473762116 8.003168176 7.95210397 7.201973186 7.42027524 7.369568228 7.555030926 256720142 glx Carbon cycling Carbon degradation Lignin Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 8.53145376 8.486606214 9.430760735 9.046763743 8.750224339 9.761280514 8.562307398 9.111654289 9.206160659 9.125397536 206577202 nhh Organic Remediation Aromatics Nitoaromatics Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 8.264307358 8.33281873 7.670413905 7.653920632 7.752127458 7.33625158 7.485376422 8.134116564 7.660735462 7.762960111 7.544352822 88807961 proV Stress Osmotic stress Synechococcus sp. WH 7805 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.082689647 8.291887297 7.882996924 7.916502856 7.769802356 7.635735353 7.848708112 8.13237399 7.842517305 7.824223936 7.781966542 184200251 Catechol Organic Remediation Aromatics Other aromatics Kocuria rhizophila DC2201 7.801257333 7.792888707 7.866676341 7.93617308 7.45101805 7.83568678 7.759721273 7.671337546 78484688 obgE Stress Radiation stress Thiomicrospira crunogena XCL-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Thiomicrospira;species:Thiomicrospira crunogena; 8.03817414 8.446853691 7.925470484 7.640337468 7.924042524 7.698748695 7.669876658 8.084820906 7.966883749 7.76195428 8.046947243 219544850 amyA Carbon cycling Carbon degradation Starch Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 7.65564436 7.362357498 7.181767931 7.319575058 7.253854869 7.710218957 7.551251197 7.258596925 7.25894867 153810913 dsrB Sulphur sulfite reductase Ruminococcus obeum ATCC 29174 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus obeum; 8.680926465 8.852214822 8.672398647 7.935468851 8.191983175 8.668022012 8.426714473 8.516016988 8.248154071 8.328491559 8.208504892 45421890 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.995748497 7.572990253 7.398968467 7.171741417 260457752 hrcA Stress Heat shock Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 7.944360105 8.02183471 7.578085172 7.62819342 7.529464527 7.429661356 7.325160087 7.720628009 7.101434944 7.604366586 7.307194333 218463775 benD Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium etli Kim 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.333043085 8.104303434 8.116504733 7.792721057 8.192333606 8.134852043 8.482816886 8.354794043 8.063649203 145298955 fnr Stress Oxygen stress Aeromonas salmonicida subsp. salmonicida A449 7.390043727 7.486596544 7.547125472 7.182926935 7.714629589 8.007492759 7.678755271 7.659767892 7.833784489 11177034 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Alteromonas sp. O-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 6.819950558 6.536897768 6.977852025 6.760822123 6.46158162 7.324396206 169628702 obgE Stress Radiation stress Mycobacterium abscessus ATCC 19977 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium abscessus; 7.519959671 7.449482608 7.409242752 7.429799792 7.226864116 219681556 ahpC Stress Oxygen stress Buchnera aphidicola str. 5A (Acyrthosiphon pisum) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Buchnera;species:Buchnera aphidicola; 6.904783951 7.112453055 222354080 hao Nitrogen Nitrification uncultured bacterium superkingdom:Bacteria; 7.028555494 7.228124336 7.033998169 7.073512992 7.441234711 7.016136859 7.050204159 27383298 linC Organic Remediation Pesticides related compound Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.326860358 8.442747456 8.128879259 8.061209536 7.859890875 7.978360091 8.301050474 8.356025735 8.289705792 8.239003656 8.307474166 78222759 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 7.559066294 7.350878764 7.435912389 6.973365093 7.661124528 7.118632047 7.005376714 7.211714475 74486337 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas sp. 10c-1-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.533858248 8.035529184 7.89559402 7.743935163 8.224517974 7.672735689 8.026485284 7.513223265 118168838 linB Organic Remediation Pesticides related compound Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 7.457174507 7.448394008 7.51825751 7.436380037 7.385782578 7.690486456 7.414757784 7.579880726 7.566119784 219848922 catechol_B Organic Remediation Aromatics Other aromatics Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 7.254187176 7.816500914 7.731465439 8.402052104 7.472083673 8.191378229 8.248705218 8.406005589 126015215 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Staphylothermus marinus F1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Staphylothermus;species:Staphylothermus marinus; 7.512095354 7.678202374 7.680247647 7.581075536 8.086869518 7.571154137 7.179495745 7.89318506 188533200 pstB Stress Phosphate limitation Erwinia tasmaniensis Et1/99 7.917401211 8.407197171 7.879187327 7.83184926 8.071611491 7.749367666 7.925619619 7.712039507 7.540443843 7.593810714 7.528888327 213584693 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 7.444483217 7.174260496 7.180915402 8.122804062 144774 mannanase Carbon cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 7.959036961 8.390988294 8.184485892 8.245708577 7.953799996 8.167576941 8.092885858 7.938494347 7.748596146 7.782052903 7.729163691 93358100 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.194859219 8.130426572 7.767491648 7.63248742 7.505652084 7.407801738 7.785364522 7.922218875 7.87406702 7.246966402 7.742127076 224588352 obgE Stress Radiation stress uncultured bacterium BLR10 superkingdom:Bacteria; 7.680603696 7.816927325 7.587999075 8.254024244 7.50344765 8.795154373 8.179824838 154497135 atzA Organic Remediation Herbicides related compound Bacteroides capillosus ATCC 29799 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides capillosus; 7.589283571 7.5402825 7.817442844 7.761742486 7.283712538 7.539102995 7.601818698 7.315306572 7.752885452 224822584 glnA Stress Nitrogen limitation Natrialba magadii ATCC 43099 7.213145349 7.471943082 22796260 nirS Nitrogen Denitrification uncultured bacterium wA20 superkingdom:Bacteria; 8.57867303 8.953460222 8.507768944 8.140559531 7.970267623 7.56873921 7.678641117 7.74272446 8.125051541 7.807314911 8.232559453 170108658 phenol_oxidase Carbon cycling Carbon degradation Lignin Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 8.18984766 8.435379743 7.845234604 7.641468494 7.744045885 7.458906131 7.521825078 7.854654333 8.295400428 7.533679327 7.958789621 169759229 vanA Carbon cycling Carbon degradation Others Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.812696296 9.143233859 8.46846582 8.349932333 8.137784766 7.942472608 8.082200985 8.309420473 8.025507726 8.167113296 8.487352742 197769182 gyrB other category gyrB Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 7.759924996 7.667401309 7.348479184 7.684322678 7.573272275 7.82495048 7.787934268 7.826539602 7.479923823 212171444 alkB Organic Remediation Other Hydrocarbons Alcanivorax sp. S15-9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 8.808458802 8.668333286 8.763079549 8.881150761 8.792069131 9.336557165 9.205850683 8.758036957 9.270244939 9.377306137 8.975466088 115254790 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.42386943 7.589494239 7.876975799 8.236231617 7.807981227 7.696285533 7.568142434 7.797255842 57224952 mer Metal Resistance Mercury Dehalococcoides ethenogenes 195 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides;species:Dehalococcoides ethenogenes; 7.736697459 7.792460596 7.983719296 8.127396512 7.861093332 8.142577453 7.928163618 7.985842125 7.848375731 126651415 SMR_antibiotics Antibiotic resistance transporter Bacillus sp. B14905 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 8.249334929 8.322148023 7.395235727 7.630968672 7.983482512 7.918496503 7.562385256 8.210717713 7.874425078 7.939697887 8.298607231 10173360 atzA Organic Remediation Herbicides related compound Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 7.260349864 7.301703537 7.377298755 6.703817374 7.751898922 7.353669668 7.07037753 7.353115207 74484304 cymA Organic Remediation Aromatics Other aromatics Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.700627372 7.92799935 8.04078233 8.147084622 7.92998337 7.791643036 7.93530746 7.770054951 139002641 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.68978092 7.446002808 7.732246065 7.431262359 7.79772962 7.983134152 7.635249936 7.789815727 7.653940806 58039775 oxyR Stress Oxygen stress Gluconobacter oxydans 621H superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter oxydans; 6.973397863 7.638123583 7.434281529 7.498912247 6.892968412 7.836308943 7.435614724 7.292009019 7.372229455 160937651 ChrA Metal Resistance Chromium Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 8.160012219 8.277518366 7.835382247 7.837481083 7.625319002 7.46284581 8.055018119 7.920356802 8.067151347 7.879837353 7.871085527 95109326 nitro Organic Remediation Others Pseudomonas superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae; 8.465908069 8.42413446 8.03727701 8.544340676 8.411058631 8.247490291 8.40609414 8.654693259 7.924428175 163852960 fnr Stress Oxygen stress Methylobacterium extorquens PA1 8.050985561 8.193298194 7.636125643 7.695465072 7.50903578 7.349982863 7.467536116 7.586434697 7.436689741 7.387508567 126720178 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.704191339 7.530696216 7.339255195 7.280492362 7.679394764 7.8173348 7.763997462 7.169628579 7.680316671 119382966 merP Metal Resistance Mercury Paracoccus denitrificans PD1222 7.276204435 7.36874899 7.29619407 7.127306391 7.249092818 7.222609562 262309367 katE Stress Oxygen stress Acinetobacter lwoffii SH145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter lwoffii; 8.21926332 7.588756126 7.604305022 8.11596964 8.14272561 7.835227102 8.061153784 7.85975755 7.733392092 149911580 AceA Carbon cycling Carbon degradation others Moritella sp. PE36 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Moritellaceae;genus:Moritella; 7.977774859 8.098390761 7.548567646 7.815607828 7.635597552 7.662888593 7.274613672 7.82553288 7.642322092 7.432037221 7.795374018 1899048 endochitinase Carbon cycling Carbon degradation Chitin Serratia plymuthica superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 8.445761942 8.147620803 7.697746772 7.975691779 8.936115019 8.648754062 8.075404591 8.538085169 7.881303028 7.709079975 8.035997997 187478281 nagG Organic Remediation Aromatics Aromatic carboxylic acid Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 8.410518108 8.627341125 7.715720301 8.046198396 211958707 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 7.68709727 7.458012249 7.670820673 7.497270842 7.085607113 8.281162182 7.406796612 7.153886321 505629 lip Carbon cycling Carbon degradation Lignin Phanerochaete chrysosporium superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 7.971987491 8.15913397 8.573999089 8.453677911 8.386203013 8.510754435 8.467190197 8.265901122 8.196073942 8.351395755 7.864735501 194683909 pap virulence adhesin Proteus mirabilis HI4320 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 8.18160276 8.438775998 7.973242663 8.084158796 7.819204775 7.397252087 7.33802932 7.415574099 7.782989632 115366212 nbaC Organic Remediation Aromatics Nitoaromatics Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 7.895222803 8.184443169 7.694590782 7.60777845 7.356716441 7.127382807 7.666111933 7.687387432 7.82280546 7.232774167 7.745245642 82617303 pstB Stress Phosphate limitation uncultured archaeon 7.866783167 8.258750616 7.372298187 7.079189208 7.41552745 7.261615682 7.450992423 7.580045474 7.233320274 151302126 AprA Sulphur adenylylsulfate reductase Thermodesulfatator indicus 8.081938128 8.490697544 7.379380838 7.388874349 7.458472837 7.153833215 7.560927336 8.259184654 7.711405549 7.516842446 7.783414698 91690062 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.895826431 8.288334154 8.206181987 8.297807858 7.923076966 8.199456558 7.899618071 7.868501392 7.820329136 124261352 exaA Organic Remediation Chlorinated solvents Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 7.123837284 7.482650184 6.941072672 7.508871509 7.096909154 7.175008798 67917615 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Chlorobium limicola DSM 245 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium limicola; 7.452923572 7.861329423 8.305220062 8.466369077 8.193993559 8.345426531 7.754412226 7.910064375 8.075366769 150257382 cellobiase Carbon cycling Carbon degradation Cellulose Victivallis vadensis ATCC BAA-548 superkingdom:Bacteria;phylum:Lentisphaerae;family:Victivallaceae;genus:Victivallis;species:Victivallis vadensis; 8.358063971 8.488738865 8.316348232 8.093328269 8.312992956 8.486610178 8.884037303 8.570861493 8.411849653 8.227739391 114324636 CopA Metal Resistance Copper Arthrospira maxima superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira; 8.501233871 8.386664431 7.926280166 8.549966917 8.223679266 8.33733988 8.912190256 8.481444716 8.514363255 8.526006735 211565154 lip Carbon cycling Carbon degradation Lignin Phanerochaete chrysosporium superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 7.790185955 7.870799268 7.457369146 8.086506699 7.578432394 7.876512145 7.648492916 7.521786587 104783638 pilin virulence pilin Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 7.966342238 8.099030129 7.938773139 7.69213955 7.804792331 7.888957294 7.800522147 8.197130757 7.701427623 7.815033027 7.781617759 90336681 pheA Organic Remediation Aromatics Other aromatics Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 8.250738233 8.101533442 7.551637386 7.369909625 7.541703528 7.703947426 7.398304523 7.509171862 7.660753507 7.456437004 110678065 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 8.396859308 8.47082005 8.633702602 8.460179651 8.955081061 8.282011557 8.75153387 8.894940926 8.141133587 85375283 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Erythrobacter litoralis HTCC2594 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 8.221886332 8.264132458 8.17361469 7.9606829 8.187972032 8.182329673 8.208834054 8.350612723 8.117206555 149142751 tftH Organic Remediation Aromatics Chlorinated aromatics Roseovarius sp. TM1035 8.03252942 8.217567271 7.365132068 7.474498782 7.79314097 8.052121458 7.471283606 8.279696988 7.547698349 7.734465636 7.779567673 88866381 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 6.993583277 7.253102856 226424960 phenol_oxidase Carbon cycling Carbon degradation Lignin Trametes sp. C30 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 8.309081906 8.307442489 7.701102818 7.505409566 7.626178396 7.419479051 7.595443663 8.183822274 7.552025121 7.802237799 7.840735616 159028091 fnr Stress Oxygen stress Microcystis aeruginosa PCC 7806 8.0627586 8.228934953 7.461032124 8.056114877 8.505627673 8.677489963 8.232336323 8.479041489 78609759 pstB Stress Phosphate limitation Lactobacillus sakei subsp. sakei 23K 7.926773396 8.160219107 7.169963801 7.128624074 6.915362198 6.881697792 169191316 gyrB other category gyrB Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.442261372 7.112194907 7.15592182 22203368 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 6.644173084 7.265996024 17933466 nifH Nitrogen Nitrogen fixation enrichment culture bacterium 01 superkingdom:Bacteria; 6.96687083 6.964506285 78102023 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.494413171 8.584928572 8.574396317 8.726048954 8.994838445 8.698854951 8.760356588 8.767412181 8.81670672 262314416 MATE_antibiotic Antibiotic resistance transporter Acinetobacter johnsonii SH046 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter johnsonii; 8.255744085 8.418696765 7.942035776 7.84424755 7.732678418 7.327488236 7.289038664 8.046361394 7.634783613 7.774519336 7.607361274 220921224 sigma_24 Stress Sigma factors Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 7.682957283 7.675306592 8.003488689 7.674692013 7.402984616 7.723750634 7.584340845 242133450 pstC Stress Phosphate limitation Dickeya dadantii Ech703 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 7.002878468 6.970604675 214031971 ppx Phosphorus Phosphorus utilization Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8.383214495 8.430650508 7.938384778 7.842922026 7.825989734 7.844158346 8.119101769 8.105941717 7.996234195 7.889644694 8.091032308 269793869 sigma_70 Stress Sigma factors Sanguibacter keddieii DSM 10542 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Sanguibacteraceae;genus:Sanguibacter;species:Sanguibacter keddieii; 8.166508548 7.490330163 7.771035187 8.077312454 8.062716921 8.143613706 8.110571428 7.874599334 139478521 mer Metal Resistance Mercury uncultured soil bacterium superkingdom:Bacteria; 8.779829212 8.51262696 8.208145346 8.619339859 8.998123777 8.521448767 8.90895494 8.720481095 8.801472753 54023944 SMR_antibiotics Antibiotic resistance transporter Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 8.009457913 7.834749936 7.735571172 7.803202802 7.559088761 7.773081641 7.740152788 7.859345196 7.273953711 145224645 glnA Stress Nitrogen limitation Mycobacterium gilvum PYR-GCK 8.056795038 8.306444875 7.895680558 7.916590774 7.657322265 7.811675886 8.330623051 8.350399808 8.344153512 8.076502642 8.191662385 23494307 pstB Stress Phosphate limitation Corynebacterium efficiens YS-314 8.539322599 8.34365161 7.230544486 7.755305201 7.880500673 7.976758316 7.20742885 8.020521356 7.50820503 7.376018764 7.676080205 226939965 ureC Nitrogen Ammonification Laribacter hongkongensis HLHK9 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Laribacter;species:Laribacter hongkongensis; 8.153372875 7.95216134 7.705388409 7.925218201 7.846043994 8.065395739 8.171183544 7.973492803 7.647712898 12659194 nifH Nitrogen Nitrogen fixation Treponema sp. ZAS-2 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema; 7.803652267 7.884388591 7.857932785 7.970440875 8.05248913 8.183003212 8.198492212 8.09234722 7.872972774 117577936 CopA Metal Resistance Copper Gramella forsetii KT0803 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Gramella;species:Gramella forsetii; 7.883666296 8.009863471 7.293368697 7.162485666 7.095363639 6.912493889 7.471302373 7.357050798 7.145210775 7.341296154 218133753 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Bacteroides pectinophilus ATCC 43243 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides pectinophilus; 7.746395126 7.900257652 6.742951471 7.052020677 226090340 MATE_antibiotic Antibiotic resistance transporter Gemmatimonas aurantiaca T-27 superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 7.775055284 7.626220965 7.609630102 7.719740958 7.725337228 7.957617372 7.656081351 7.543855566 7.71034583 126032287 endochitinase Carbon cycling Carbon degradation Chitin Hypocrea jecorina superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 7.74051345 7.886966592 8.331802477 8.156903015 8.441970685 8.176573976 8.366899943 8.082693334 8.49558799 223895391 acetylglucosaminidase Carbon cycling Carbon degradation Chitin bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 8.987686544 9.087516603 8.717074869 8.515327811 8.220108422 8.406417977 8.356877262 8.239022089 8.277444331 8.667782725 261877033 fnr Stress Oxygen stress Selenomonas noxia ATCC 43541 6.97644361 7.120523293 227192411 nirA Nitrogen Assimilatory N reduction Lactobacillus brevis subsp. gravesensis ATCC 27305 8.074928337 8.580136976 7.70880608 7.459009198 7.722860335 7.39807094 7.236246608 7.50921757 7.427131314 7.823835145 77381141 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.377559043 8.339038804 8.048525273 7.835175081 8.077597059 8.240385151 7.963472363 8.23461591 8.240862336 8.172770014 268618507 pstA Stress Phosphate limitation Sulfurospirillum deleyianum DSM 6946 8.251170324 8.409037197 7.368158145 7.015583094 7.337794215 7.079727263 7.092351339 7.22893814 7.087423417 7.312628542 118683117 ArsC Metal Resistance Arsenic Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 8.136018222 8.135127733 253989257 ppk Phosphorus Phosphorus utilization Photorhabdus asymbiotica superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus; 7.09636445 7.294752961 7.215551986 6.890673037 6.632549339 6.977616303 7.336979071 71906166 sigma_70 Stress Sigma factors Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 7.768103213 7.32332528 7.482799684 7.209282742 7.348385393 7.90204432 7.252681475 7.323841797 7.782967328 66866174 amoA Nitrogen Nitrification superkingdom:Bacteria; 7.467658531 7.279626815 7.780343976 7.76842874 8.339843791 7.253975933 7.144227525 237797281 vdh Carbon cycling Carbon degradation Others Pseudomonas syringae pv. oryzae str. 1_6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 8.079125447 8.058257348 8.275763861 8.006194505 7.840005851 7.588472657 8.005983662 8.078651714 8.047632997 7.845854646 7.883105499 4335908 fimbriae virulence fimbriae Escherichia coli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 6.943907452 7.277354189 238867918 SMR_antibiotics Antibiotic resistance transporter Edwardsiella ictaluri 93-146 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella ictaluri; 8.351427901 7.970631756 7.767209917 7.657846805 8.209212365 8.333780222 7.829401958 7.758842824 7.80783605 222120570 pstS Stress Phosphate limitation Macrococcus caseolyticus JCSC5402 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Macrococcus;species:Macrococcus caseolyticus; 8.146977326 8.5333411 7.436939812 7.637446978 7.537222533 7.391416533 7.610445041 78355738 TerC Metal Resistance Tellurium Desulfovibrio desulfuricans G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 7.3207172 7.072577898 7.554277921 7.573061747 6.981492123 7.902130016 7.328847609 7.165475452 7.538761631 15131665 AceA Carbon cycling Carbon degradation others Haloferax volcanii superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax; 7.965883608 7.954972742 7.819811165 7.415244814 7.844671336 7.905842936 7.75426917 7.853742274 7.673573896 283951832 obgE Stress Radiation stress Acidaminococcus fermentans DSM 20731 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Acidaminococcus;species:Acidaminococcus fermentans; 7.480605863 7.10251146 6.990334203 6.996659176 6.840746345 7.668636024 7.046450566 7.264380286 163750479 pimF Organic Remediation Aromatics Aromatic carboxylic acid Shewanella benthica KT99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella benthica; 7.981464498 7.813043658 7.168361804 7.186685733 7.271581949 6.995786555 7.577644463 7.195594239 7.168574769 6.919802506 77979436 B_lactamase_A Antibiotic resistance Beta-lactamases Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 7.979618739 7.837044774 7.747908312 7.751944997 7.743326587 8.252276595 7.629894025 7.540197181 7.858799303 4585361 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. I24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.265203115 8.452774831 7.690965534 8.039944885 7.69851834 7.50925397 7.803148717 8.000052923 7.814785598 7.364690542 7.415309534 255034957 B_lactamase_C Antibiotic resistance Beta-lactamases Dyadobacter fermentans DSM 18053 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 7.835041397 7.961815098 7.653235372 7.565055368 7.6672876 7.445968222 7.792910444 8.1147599 7.874370721 7.352733525 7.767364405 108461298 sigma_32 Stress Sigma factors Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 8.72725726 8.412606358 8.031106287 8.197392546 8.85799341 9.066159056 8.732201204 8.971163162 8.425469398 8.450828137 8.779096161 58259499 glx Carbon cycling Carbon degradation Lignin Cryptococcus neoformans var. neoformans JEC21 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Tremellomycetes;order:Tremellales;family:Tremellaceae;genus:Filobasidiella;species:Filobasidiella neoformans; 7.382943904 7.435583046 7.46043678 7.239057675 7.256276867 219949339 fnr Stress Oxygen stress Methylobacterium nodulans ORS 2060 7.838760049 7.849266443 7.611588464 8.131758347 7.770749971 8.494743293 7.619428671 7.718946913 186466196 cap virulence capsule Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 7.606519174 7.81871591 6.964602593 7.020495035 21225707 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.290939312 8.176750503 8.273165605 7.918672872 8.110052928 8.169982384 8.306232669 8.347984914 8.222183978 8.126780496 115396494 endoglucanase Carbon cycling Carbon degradation Cellulose Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.464142313 7.620429842 7.337674099 7.229229077 7.83019075 7.649716691 7.830041704 7.648437215 7.534270634 33635761 cap virulence capsule Prochlorococcus marinus str. MIT 9313 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 7.437634118 7.660475448 7.370767014 7.902231003 7.775767842 7.529294385 7.628959824 7.398954451 220906009 sigma_70 Stress Sigma factors Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.469250329 8.247816534 7.953998809 7.859600082 8.078244922 7.982219226 7.643961256 8.307459873 7.733937438 7.906607623 7.748156743 94971322 sigma_70 Stress Sigma factors Candidatus Koribacter versatilis Ellin345 7.530939713 7.568117235 7.726508989 7.690509535 7.703183529 7.469471763 7.211125499 7.601438791 229917535 ahpC Stress Oxygen stress Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 6.820108375 7.156348552 6.88363735 7.393283466 10187455 nitA Organic Remediation Aromatics Other aromatics Alcaligenes faecalis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes; 8.405415945 8.544614452 7.794201822 7.64515226 7.95292556 8.260417114 7.880084133 8.558336936 7.686276985 7.63597271 7.822204264 119536708 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 7.883795979 8.435630952 8.404187923 8.080391958 8.309765423 7.683582266 8.296537889 8.248270335 209516642 cadBD Metal Resistance Cadmium Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.056302361 8.103456747 8.318296176 8.091212996 8.329746197 8.89383516 8.473285982 8.521529628 8.1369548 8.537568555 68230223 TerC Metal Resistance Tellurium Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.107493045 8.209026542 8.153900377 7.798906355 7.681609045 7.862652817 7.879702645 8.207625386 7.821071821 7.596468529 7.853706744 150033306 pstB Stress Phosphate limitation Methanococcus maripaludis C7 8.028341026 8.17588045 7.173038658 7.093672776 7.360314506 6.625151205 7.307521813 218219314 nplT Carbon cycling Carbon degradation Starch Mitsuokella multacida DSM 20544 7.308315376 7.732934543 7.331350093 7.310464455 7.327814014 7.818902059 7.513368047 7.534827034 220904711 sigma_32 Stress Sigma factors Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 8.094721062 8.043756568 7.709649445 7.53738404 7.712163895 8.059351864 7.965726272 7.72731628 7.393482078 158435721 sigma_70 Stress Sigma factors Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 8.56627018 8.564712185 7.774300321 7.640411999 7.736338898 7.320361426 7.413259131 7.826576311 7.769395293 7.723595638 7.839778994 139002666 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.243008909 8.060083224 7.765826037 7.680074474 7.500775275 7.280685186 7.530969216 7.847940779 7.607669925 7.489371675 7.711120852 120595484 fnr Stress Oxygen stress Polaromonas naphthalenivorans CJ2 7.511591064 7.614211691 7.764662018 7.935113364 7.540968938 7.811465933 7.703176024 7.94305491 62424736 B_lactamase_A Antibiotic resistance Beta-lactamases Brevibacterium linens BL2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium linens; 7.637522865 7.883367344 7.288531293 7.636406702 8.273337756 8.123035592 7.907537416 7.783856821 42779577 endochitinase Carbon cycling Carbon degradation Chitin Bacillus cereus ATCC 10987 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 7.840460222 7.493301199 7.469513015 7.053555486 7.189660193 110819316 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.055407502 8.016983408 8.73271707 8.13779988 8.610437599 7.984914698 8.273513682 8.635784651 8.550021904 165976512 ArsC Metal Resistance Arsenic Actinobacillus pleuropneumoniae serovar 3 str. JL03 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus pleuropneumoniae; 7.758703614 7.98257189 7.114483399 6.792991548 85825425 rubisco Carbon cycling Carbon fixation Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.616635317 7.972399165 8.23505163 8.143255786 8.442114385 7.932256508 7.747611655 7.715155456 196246318 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Cyanothece sp. PCC 8802 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.072137976 8.191288904 7.683603137 7.459493666 7.526648592 7.524873279 7.010134465 7.656171294 7.565535221 7.12450606 163839598 katE Stress Oxygen stress Renibacterium salmoninarum ATCC 33209 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Renibacterium;species:Renibacterium salmoninarum; 8.391239702 8.228846283 8.180687991 8.367851882 8.070391978 8.869834278 7.910892814 8.09971363 8.095044738 170721641 cytochrome Energy process Energy process Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.174770456 8.201412425 8.285075172 7.987239391 7.803053153 8.1205087 7.759000203 8.288931296 8.217079445 5739395 tfdA Organic Remediation Aromatics Chlorinated aromatics Streptomyces spectabilis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7.94068168 7.507785578 7.814218098 7.450671212 7.381398689 7.306533599 7.937543392 32443237 sigma_70 Stress Sigma factors Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 8.030513008 8.698706824 8.643210144 8.860593791 8.562702376 8.802172304 8.457918809 8.213056235 8.300140263 90107434 fnr Stress Oxygen stress Rhodopseudomonas palustris BisB18 7.850805219 7.742583705 7.658742389 7.481505996 7.782266869 7.936041349 7.682237659 7.772923353 7.686022743 160933181 Al Metal Resistance Aluminum Clostridium leptum DSM 753 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 8.011880125 7.941953562 7.375594996 7.771977104 7.699587557 7.625795869 7.410627658 7.7988806 7.377190414 7.672262296 7.732651744 88808575 pstB Stress Phosphate limitation Synechococcus sp. WH 7805 8.886470534 8.962854995 8.799389645 8.651473936 8.646271645 8.515558251 8.878417048 8.482692425 8.672354896 8.59088691 8.746938819 120608404 pilin virulence pilin Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 7.592153259 7.446532049 7.168736322 7.238822481 7.713071367 7.068098189 7.321502098 55978147 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.377271186 7.462061636 7.793797652 7.474728806 7.669158781 7.429907461 7.474373449 254511749 sigma_70 Stress Sigma factors Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 8.204711022 8.197710323 8.104706595 8.382345653 8.19078048 8.166074434 8.151036627 8.222306515 8.328274275 18476191 xylanase Carbon cycling Carbon degradation Hemicellulose uncultured bacterium superkingdom:Bacteria; 7.20142567 7.126977873 7.132226454 6.901575242 6.991464931 7.460161879 156448630 chnB Organic Remediation Other Hydrocarbons Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 7.949081642 7.910951381 7.69614511 7.88212967 7.821544659 8.155488154 7.783646203 7.888307952 7.326946961 106769175 FTHFS Carbon cycling Acetogenesis Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 7.652163689 7.808173466 7.883595639 7.779899548 8.320206287 8.229577263 7.98676542 8.163330572 111220927 trzN Organic Remediation Herbicides related compound Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 8.423891648 8.556648014 8.527359751 8.469484106 8.300547635 8.606009624 8.559131304 8.67096263 8.510327902 8.379291467 8.372176219 222438025 NirB Nitrogen Assimilatory N reduction Labrenzia alexandrii DFL-11 7.195831574 7.541673214 6.944403828 7.155679942 7.006314797 7.22020778 167346568 hrcA Stress Heat shock Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 7.922386533 7.943986153 7.666488031 7.672182026 7.728161484 7.895344875 7.654287088 7.492439469 7.332393129 123441008 tutFDG Organic Remediation Aromatics BTEX and related aromatics Yersinia enterocolitica subsp. enterocolitica 8081 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 6.865215961 7.285270363 6.824148811 118168203 mhpA Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium avium 104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 8.149408256 8.261032253 7.972620094 7.892225476 8.14846986 8.217365332 8.02558177 8.010605937 8.002398426 237907917 endochitinase Carbon cycling Carbon degradation Chitin Uncinocarpus reesii 1704 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 8.437703403 8.346375816 7.629951603 7.648399712 8.116538039 7.638618034 7.243135604 7.683735826 7.725756033 7.988793183 55230976 ahpF Stress Oxygen stress Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 8.111707139 8.016646654 7.649591487 7.919721696 7.917122758 7.989947133 7.973812842 8.18410089 7.507858249 82723184 gyrB other category gyrB Clostridium beijerincki NCIMB 8052 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium beijerinckii; 7.212106273 7.138724122 7.129352523 7.501152697 209530333 sigma_32 Stress Sigma factors Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 7.354560348 8.055806535 8.062662054 8.225239713 8.329058373 8.251786739 8.529782436 8.486513424 188025409 B_lactamase_C Antibiotic resistance Beta-lactamases Providencia stuartii ATCC 25827 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia stuartii; 7.791874685 8.183694963 7.521136165 7.756448656 7.587738465 7.058027799 6.696927796 7.792409608 7.311740972 7.139843826 7.313764939 171913554 TerD Metal Resistance Tellurium Verrucomicrobium spinosum DSM 4136 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Verrucomicrobium;species:Verrucomicrobium spinosum; 8.431149142 8.472205086 7.537071662 7.760205317 8.078807701 8.248352576 7.599830848 8.291452431 7.670070919 7.896136102 7.949909773 145046536 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.58201184 7.760628978 7.524425202 7.537268541 7.668331731 7.950738563 7.978965061 7.720468451 7.685245249 237757930 pstB Stress Phosphate limitation Corynebacterium kroppenstedtii DSM 44385 8.179445591 8.070182395 7.451682572 7.818809505 8.115954976 8.130171761 7.966424016 8.152666994 8.10788007 7.802995647 8.142260291 112462241 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.244918038 8.646761746 7.998370961 7.91238663 7.880688553 7.685049354 8.083810145 8.106885656 8.012225915 8.036979935 148550685 katE Stress Oxygen stress Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.346614445 8.500349728 8.169224755 7.93471245 8.522871222 8.30472832 8.193409372 8.210891212 8.396161399 112464033 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.392110137 7.230728499 120405368 cumA Organic Remediation Aromatics Other aromatics Mycobacterium vanbaalenii PYR-1 8.155098777 8.085777615 7.979126427 7.882444907 8.269508501 8.190205689 8.228238858 7.984592049 8.265357811 256585538 ahpC Stress Oxygen stress Saccharomonospora viridis DSM 43017 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora viridis; 8.170053431 8.556529047 7.622105157 7.596711367 7.839956355 8.207985675 7.685540717 8.571938953 7.384983308 7.61349459 7.563104288 83574258 gyrB other category gyrB Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 8.410893907 8.316114226 8.491787389 8.345338386 8.333432941 8.193826084 8.510496629 8.407138 8.311528721 8.086808399 7.7247187 77960187 AceB Carbon cycling Carbon degradation others Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 8.566443858 8.53633188 8.026556384 8.262389288 8.201727514 8.339428386 8.215034597 8.655874111 8.257566443 8.441142189 8.581963528 49036626 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.662978723 8.102501805 7.446980811 7.230618883 7.105230347 6.937721659 7.099496707 7.436430865 7.064722941 7.048888397 7.297358254 222120569 pstC Stress Phosphate limitation Macrococcus caseolyticus JCSC5402 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Macrococcus;species:Macrococcus caseolyticus; 7.947912284 8.407869157 7.739268961 7.667479176 7.478718248 7.361166639 7.298826633 7.865666163 7.421017178 7.234717726 7.757365182 13536999 phytase Phosphorus Phosphorus utilization Aspergillus oryzae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 8.136349713 7.674626237 7.769353224 7.554344176 7.6793985 7.891970739 7.837463081 7.710060906 118579830 hrcA Stress Heat shock Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 8.367399995 8.085339387 7.25422943 7.492019014 7.804075902 7.470943729 7.58137589 7.887812114 7.856755511 7.869685204 114567213 ZntA Metal Resistance Zinc Syntrophomonas wolfei subsp. wolfei str. Goettingen superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Syntrophomonadaceae;genus:Syntrophomonas;species:Syntrophomonas wolfei; 8.163155508 8.236324697 7.18618803 7.541597749 7.536854642 7.762353383 7.405428576 7.709868532 7.473256668 113933454 linB Organic Remediation Pesticides related compound Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.218152843 8.290349396 8.423898456 7.655190193 8.466757524 8.034557416 8.525268903 8.456091028 8.246636074 116620272 exaA Organic Remediation Chlorinated solvents Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 8.106046728 8.419270114 7.572267887 7.587347614 7.493600691 7.949908675 7.031484322 8.224966631 7.436995931 7.49289201 7.83072093 269993102 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7.31610366 7.425865249 7.361633623 7.088350839 6.884473952 7.635556722 7.168673104 7.617212354 198265764 alkB Organic Remediation Other Hydrocarbons Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 7.754386305 7.536991086 7.245582531 7.336163312 7.41031697 7.150398578 7.339433049 7.547182932 196482332 tfdA Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 8.784021718 8.507730651 8.352796371 7.872448545 8.021624781 163857951 nasA Nitrogen Assimilatory N reduction Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 7.106387812 7.624164535 7.40649732 7.11873216 7.827862306 78185801 sigma_70 Stress Sigma factors Synechococcus sp. CC9902 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.567155399 7.549036613 7.488197503 7.340871142 7.336396163 7.811307851 7.08126612 7.138784633 7.391948396 158331263 pulA Carbon cycling Carbon degradation Starch Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 8.663363882 8.83801107 8.050205865 8.09740443 8.418207442 8.596172781 8.175455792 8.626637249 8.076425206 8.22575529 8.438679733 229610695 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.91403579 7.87774745 7.536135014 7.322785409 7.810822155 7.589603582 7.574071111 7.496551299 7.481470675 34499217 sigma_70 Stress Sigma factors Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 7.259641981 7.109626911 7.509083059 7.539470056 7.343372113 7.843250061 269133856 SMR_antibiotics Antibiotic resistance transporter Klebsiella variicola At-22 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella variicola; 7.600298365 7.218919834 110831199 vanA Carbon cycling Carbon degradation Others Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 8.422045655 8.481444197 8.62700906 8.356708802 8.819710146 8.518842329 8.500899938 8.434182342 8.442994723 77461887 ZntA Metal Resistance Zinc Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.607939601 7.668492309 7.204924446 7.434397958 7.322062054 7.654645816 7.324647353 7.095912372 115260233 mer Metal Resistance Mercury Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.168652458 7.535103038 7.860854444 7.851068225 7.585288477 7.836495749 7.276986531 7.392099061 7.285685554 159901085 sigma_24 Stress Sigma factors Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 7.445137033 7.260717291 7.846094832 7.58466749 7.43723334 6.927730317 7.455132718 217501854 sigma_24 Stress Sigma factors Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 7.973862202 8.138362055 7.41794958 7.64284558 7.799467995 7.983984684 7.718765085 7.367570157 7.550717195 7.61961189 85069100 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.294761361 8.188645623 7.771012441 7.94730587 7.762103973 7.830820007 7.847495175 8.004796749 8.138671396 8.370486328 7.758616124 260609249 sigma_32 Stress Sigma factors Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 8.373058366 8.150648421 7.64534534 7.962053363 8.38289006 8.416296209 8.282661598 8.354647027 8.301772455 8.287439971 8.628169178 163748966 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Shewanella benthica KT99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella benthica; 7.26263557 7.143983367 163761274 pstA Stress Phosphate limitation Hoeflea phototrophica DFL-43 8.252404687 8.112869702 7.854814008 7.948519033 8.154519919 8.088260053 8.28075999 8.121334088 7.5643617 68263042 pstC Stress Phosphate limitation Corynebacterium jeikeium K411 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 7.99896656 8.125178402 7.97232479 7.865045445 7.714729653 7.982357986 8.08827529 8.080570105 7.804701068 7.798176651 7.447858209 89900412 mer Metal Resistance Mercury Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 8.483851736 8.297328883 7.477968142 8.11492703 8.066215046 8.207842942 7.217914536 8.249046962 7.514693625 7.938829278 7.837890226 148628332 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium superkingdom:Bacteria; 8.45022224 8.297678272 8.141089127 7.946302063 7.670957401 7.981648548 7.958694288 8.199549848 7.924549703 7.909945939 7.943547309 224367365 phoB Stress Phosphate limitation Desulfobacterium autotrophicum HRM2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium;species:Desulfobacterium autotrophicum; 8.401964591 8.382161309 7.906059032 7.888408685 8.190707792 8.075066676 7.950255985 7.766876993 7.867987631 7.57144811 8.01541951 84385320 AceB Carbon cycling Carbon degradation others Vibrio splendidus 12B01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 7.863462975 7.986506547 6.669325448 7.061423153 7.120481836 6.890792497 7.219039024 119716813 glnA Stress Nitrogen limitation Nocardioides sp. JS614 8.343964351 8.26654914 8.105397887 8.618049086 8.40410676 8.337390878 8.433633326 8.106819391 223512839 mer Metal Resistance Mercury Ricinus communis superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Streptophyta;order:Malpighiales;family:Euphorbiaceae;genus:Ricinus; 7.701647264 7.923260065 7.633924389 7.860000975 8.256117245 8.330266925 8.08991552 7.803551517 8.02333761 83632559 endochitinase Carbon cycling Carbon degradation Chitin Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 8.183858958 8.011943811 7.72755794 8.014358589 7.786169567 7.944649052 8.202475559 8.018767635 8.389982402 8.284762322 8.023749647 238600830 phenol_oxidase Carbon cycling Carbon degradation Lignin Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 7.694192877 7.776903593 7.880619929 8.516999061 8.118148663 8.538523837 8.392660509 8.356144384 217503584 BchY other category chlorophyllide reductase Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 8.863737754 8.839123735 8.344415387 7.693191685 8.6952674 8.831562226 8.560933886 8.662397691 8.317225967 8.544616785 8.563872581 260838785 phoB Stress Phosphate limitation Vibrio sp. RC341 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.005362126 8.025261205 8.311542638 8.370776799 8.307411582 8.353704451 7.999048581 8.252215127 7.872091384 118705681 vanA Carbon cycling Carbon degradation Others Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.622060779 8.244658024 8.126979717 8.102557033 8.365970765 7.949732433 7.877185554 7.909602803 8.145085231 229876369 glnA Stress Nitrogen limitation Sphaerobacter thermophilus DSM 20745 8.084619138 8.262716845 8.424015206 8.375018652 8.562881213 8.416036151 8.056903798 8.574456893 8.105540914 44903457 mhpA Organic Remediation Aromatics Aromatic carboxylic acid Sphingobium herbicidovorans 8.047749418 8.275246081 7.072568289 7.3263372 7.32577132 6.881694575 6.851515342 7.177909473 7.13480264 149358954 AceB Carbon cycling Carbon degradation others Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 7.521810354 7.511225092 7.723886692 7.484412102 7.434417889 7.945294922 7.269612886 7.470048328 7.281743951 146340767 linB Organic Remediation Pesticides related compound Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.379483922 8.296547449 8.133888084 7.867737105 8.338326361 8.867881507 8.174951504 8.370971422 7.947666835 8.163604813 7.865193787 29346860 pcc Carbon cycling Carbon fixation Bacteroides thetaiotaomicron VPI-5482 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides thetaiotaomicron; 7.146724902 7.220431035 6.868097382 7.38982406 76803737 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 8.263776472 8.440389649 8.085992169 8.039784178 8.293345383 7.841558131 8.41018803 8.069518703 8.300237285 8.262039872 8.260951461 170690598 vanA Carbon cycling Carbon degradation Others Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 7.552323074 7.744357757 7.381136526 7.595452279 7.82593826 8.017036057 7.907641378 7.737631917 7.546354078 170016595 ppx Phosphorus Phosphorus utilization Leuconostoc citreum KM20 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc citreum; 7.853540752 7.924782353 6.968740357 7.158849762 7.432796473 3702218 toxin virulence toxin Actinobacillus sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus; 8.443866095 8.468011223 7.844073832 7.717859883 7.72625595 7.260708714 7.480328488 7.883603451 7.818980801 7.593412833 7.826287241 87308539 katE Stress Oxygen stress Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 7.729325129 7.74689986 7.391883262 7.375085897 7.581209257 7.909367481 7.536102576 7.503253527 7.770172167 29293450 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.76606724 9.026410995 8.465366619 8.540015788 8.582178056 8.655672108 9.265691071 8.874913043 9.210084919 9.294432788 9.189624389 148271489 ara Carbon cycling Carbon degradation Hemicellulose Clavibacter michiganensis subsp. michiganensis NCPPB 382 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 8.079784859 8.111373078 7.820169051 7.584592561 7.764184602 7.231553437 7.462100417 7.496764319 7.501324157 118028954 Arylest Organic Remediation Aromatics Other aromatics Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.328599731 8.231989183 7.950222634 8.404020945 8.693398986 8.410525684 8.745108489 8.33366065 8.644666647 8.66482567 8.655849291 209539245 CopA Metal Resistance Copper Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.181262451 8.424696016 8.216896764 8.010903135 7.80733751 7.862072242 7.840084784 7.888107642 7.952276313 7.95962979 7.946183826 55847393 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7.101450654 6.956076823 6.998792521 6.877551984 7.398316006 89358821 xylXY Organic Remediation Aromatics Aromatic carboxylic acid Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.517641499 8.378801312 8.342481491 8.095674964 8.428355892 8.498071875 8.690512943 8.075334361 114571248 narJ Stress Oxygen limitation Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 8.524777231 8.364721737 8.952883042 8.907138746 8.85088298 8.203358916 9.196004986 8.282054457 8.818077158 8.711237131 8.993203799 88701183 glnA Stress Nitrogen limitation Congregibacter litoralis KT71 7.764156074 8.212567941 7.795795354 7.650930042 7.557940549 7.582677102 7.384646419 7.708993584 7.578126049 7.486388018 7.575985892 239909968 ahpF Stress Oxygen stress Thermococcus gammatolerans EJ3 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus gammatolerans; 7.993933729 8.044980717 7.716026564 8.096770095 8.038112558 8.036637673 7.930407127 8.187965233 7.753080894 22778821 pstB Stress Phosphate limitation Oceanobacillus iheyensis HTE831 7.778061863 7.997428095 6.918069212 6.783199203 6.971831552 6.8388693 7.091422295 7.147412999 126666229 fnr Stress Oxygen stress Marinobacter sp. ELB17 7.300160599 8.035807417 197296821 MFS_antibiotic Antibiotic resistance transporter uncultured bacterium BLR2 superkingdom:Bacteria; 8.378537465 8.0234174 7.747700386 7.938408879 8.429214663 8.705906512 8.369391246 8.11649947 7.997115732 8.2506767 8.154814786 10440998 Catechol Organic Remediation Aromatics Other aromatics Acinetobacter radioresistens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 8.056880673 7.865681226 7.307735103 7.142580475 7.339504549 7.566802221 7.284902871 7.328253124 7.506532849 7.234236263 29243597 holin_type_2 Bacteria phage LYSIS Pseudomonas phage gh-1 order:Caudovirales;family:Podoviridae;genus:T7-like viruses; 7.721528064 7.486877996 7.566465766 7.237715191 7.352601195 7.294370154 77820052 nirS Nitrogen Denitrification uncultured organism 8.628954429 8.942958353 8.421565335 8.345345344 8.27633954 8.370678526 8.684283264 8.435212629 8.585719013 8.734546053 8.685173052 149920361 linB Organic Remediation Pesticides related compound Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 7.266334581 7.480150954 7.86166956 7.638070021 7.437657463 7.803389679 7.358911642 7.337950671 7.594823653 153887456 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.054962393 8.465521205 7.877014864 7.969531607 7.791943386 7.917881694 7.745709757 8.113487008 7.843718996 8.056406895 7.664643241 9971345 gyrB other category gyrB Cytophaga marinoflava superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Leeuwenhoekiella; 7.953887719 7.996081609 7.390553194 7.18650087 7.379557836 7.14476146 6.560661655 7.545057783 7.238569994 7.22659722 7.286605886 144906122 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.634508278 7.928917046 8.247325415 8.096041054 7.924449793 7.974965657 8.096215544 8.135893173 8.320733764 46201104 ZntA Metal Resistance Zinc Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 8.235308996 8.552356464 7.884666013 8.003307332 7.759179416 7.513195256 7.943926717 7.921696686 7.879117339 7.983183975 182439407 TerD Metal Resistance Tellurium Streptomyces griseus subsp. griseus NBRC 13350 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 8.59739898 8.349180502 7.691477564 7.711650026 7.753903189 8.356352479 7.851424835 8.144619046 7.809577123 7.918713043 7.665736257 170722064 iro virulence Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.8869697 8.203538509 8.181489033 7.494858894 8.092009892 7.846108261 7.956033834 7.981821163 8.430820418 256784623 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces lividans TK24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces lividans; 8.23567615 8.15092214 7.388899539 7.6013407 7.735841433 7.840613496 7.408091984 8.105630628 7.489455531 7.521647568 7.429304428 194291858 fnr Stress Oxygen stress Cupriavidus taiwanensis 8.438683232 8.732173751 8.4916985 8.510223681 8.506334115 8.568654968 8.549125807 8.660179457 8.68849648 8.800812233 8.934531399 189085872 DNA_polymerase_type_I Bacteria phage REPLICATION Salmonella phage phiSG-JL2 order:Caudovirales;family:Podoviridae;genus:T7-like viruses; 7.267344992 7.182284099 7.038180044 6.871382117 7.863814178 7.558611413 7.131267526 7.430032163 31619852 nbzB Organic Remediation Aromatics Nitoaromatics Mycobacterium bovis AF2122/97 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium bovis; 7.760548418 8.287838497 7.203019123 7.352071848 7.345113683 6.986761484 6.84154839 7.447079237 7.160924284 7.50610479 7.554587888 84796654 todC Organic Remediation Aromatics BTEX and related aromatics Arthrobacter sp. 3YC3 8.528992842 8.072598003 7.931550283 8.058165301 7.970297132 7.916593312 8.162606088 8.474472633 7.983690825 8.189312842 8.072166274 114772373 ZntA Metal Resistance Zinc alpha proteobacterium HTCC2255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 6.79438861 7.049467034 6.511185141 7.427062722 229786637 nplT Carbon cycling Carbon degradation Starch Catonella morbi ATCC 51271 7.359265248 7.299439347 7.084379752 6.617273415 6.751099385 7.500622629 149209717 tftH Organic Remediation Aromatics Chlorinated aromatics Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 8.405340383 8.474893694 7.835493456 7.71029713 7.756232187 8.023294588 8.082534998 8.17691289 7.925547962 7.87790962 222447957 ChrA Metal Resistance Chromium Chloroflexus sp. Y-400-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus; 7.218660718 7.058312285 7.405918528 7.152714066 7.245062408 113530082 ZntA Metal Resistance Zinc Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 7.49196181 7.471666529 8.195208691 8.29363136 7.905080138 8.085990574 7.433813937 7.842312454 7.838981621 85709188 tfdA Organic Remediation Aromatics Chlorinated aromatics Erythrobacter sp. NAP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 8.245556541 7.870764236 7.193384388 7.186287811 7.721404727 7.938946287 7.426265542 7.29606738 7.624948888 7.708880423 159893550 pstC Stress Phosphate limitation Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 8.06618838 7.857715129 7.736406718 7.820476603 8.37363606 8.302428375 8.323605445 7.695942779 8.049111342 4105518 rubisco Carbon cycling Carbon fixation Thiobacillus intermedius K12 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas;species:Thiomonas intermedia; 7.850044633 8.378187765 7.843225965 7.782013379 7.825405656 7.741211111 7.828686924 8.044306925 7.76133706 7.777927419 7.450860643 177840817 sigma_24 Stress Sigma factors Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 8.227885 8.491696798 8.136694695 7.671845584 8.53122764 7.995779925 8.310418775 8.282657232 8.513755281 145589952 hrcA Stress Heat shock Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 7.536488222 7.414429076 7.340776919 6.960997779 7.187940196 7.736576717 7.255786291 7.300166054 7.382431618 227485621 ctsR Stress Protein stress Anaerococcus lactolyticus ATCC 51172 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Anaerococcus;species:Anaerococcus lactolyticus; 7.81681963 8.211482194 7.6377027 7.505733683 7.445998191 7.144718753 7.190527865 7.753571805 7.725765912 7.628624389 7.652431598 91788887 ChrA Metal Resistance Chromium Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 7.323271084 7.760641491 7.455707305 7.342651664 7.205489125 7.660161206 7.830434537 183982392 pulA Carbon cycling Carbon degradation Starch Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 7.821385491 7.989036531 7.873608151 7.719238989 7.797800874 7.481967759 7.81013546 7.985959476 8.002580818 54026349 TerD Metal Resistance Tellurium Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 8.705320594 8.64541845 8.239812161 8.772909177 8.727159752 8.42907613 8.811583267 8.715848814 8.244335418 121495584 narG Nitrogen Denitrification uncultured bacterium 8.506748996 8.174706684 8.367508939 7.68083975 8.370877295 7.946373528 8.085144098 8.399940631 7.919764759 107856921 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 8.004355807 8.149830213 7.702849097 8.079041077 7.935778031 8.225580042 8.338781834 8.132214362 7.66766535 84696746 TerZ Metal Resistance Tellurium Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 7.150876438 7.193725076 227891648 pstB Stress Phosphate limitation Lactobacillus salivarius ATCC 11741 7.232071177 7.129190706 126437114 CopA Metal Resistance Copper Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.519519675 8.453214658 7.808293124 8.004160944 8.627136991 8.69950765 8.061058149 8.873086067 8.079840689 8.068856336 8.518671373 167348190 tfdA Organic Remediation Aromatics Chlorinated aromatics Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.861221481 8.54614091 7.644410263 8.318339586 8.630761225 8.893829383 8.005055058 8.296322123 8.573636992 8.422883634 4996798 gyrB other category gyrB bacterium rM5 superkingdom:Bacteria; 8.222853483 8.109874178 8.047573744 8.015684874 7.835717841 7.976935044 8.017246542 8.148674669 8.34961764 8.067897731 7.888316274 77954982 ChrA Metal Resistance Chromium Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 8.358784625 8.259113744 8.435255418 8.55603312 8.591518783 8.499620407 9.030856454 8.468409707 9.108226756 8.9711713 8.959826537 93357435 sigma_70 Stress Sigma factors Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.51264053 8.449134513 7.970486417 8.124837689 7.970046475 7.898951231 8.469553812 8.307456307 8.486049782 8.014498314 8.226848365 85826777 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.521254938 7.845242819 7.550495931 8.203892733 8.156829325 58920292 dsrA Sulphur sulfite reductase Desulfovibrio alkalitolerans superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 7.153254144 7.129728025 6.761229756 7.495724762 77378671 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.269414068 7.411028381 7.571545508 7.767555801 15141372 nmoA Organic Remediation Aromatics Nitoaromatics Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 8.418633761 8.51028402 8.348019844 8.336165373 8.03851084 7.677679246 8.415695091 8.167620574 8.254503869 8.057049898 260840386 endochitinase Carbon cycling Carbon degradation Chitin Vibrio sp. RC341 8.112300709 8.688414116 7.822603115 7.831254219 7.711926506 7.479223977 7.357183107 7.863133425 7.626766082 7.627295974 7.94179808 258514380 cap virulence capsule Desulfotomaculum acetoxidans DSM 771 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum acetoxidans; 7.347889979 7.285672936 7.283188071 6.987053468 6.969981985 7.565914602 7.103993762 7.137370629 7.140826734 159892989 sigma_24 Stress Sigma factors Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 7.885968014 8.010425053 7.18903137 7.678816344 83846425 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 7.891793874 8.133954513 8.270447888 7.911867846 7.730123933 7.850410517 8.12723638 7.941777883 7.893132235 7.698822182 7.774771179 147886024 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 7.845757474 7.56426067 7.483117589 7.313823204 7.676890805 7.550956999 7.422225346 6119631 alkB Organic Remediation Other Hydrocarbons Pseudomonas chlororaphis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas chlororaphis; 7.869219159 8.215369132 8.155607674 8.191985083 8.75268925 8.191999312 8.746556191 8.47610505 8.541395184 82410435 ureC Nitrogen Ammonification Nitrosospira multiformis ATCC 25196 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira;species:Nitrosospira multiformis; 7.342150301 7.413264756 7.137674109 6.891233216 7.133866146 7.567883861 7.146127036 6.997423228 7.294275286 134298058 clpC Stress Protein stress Desulfotomaculum reducens MI-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum reducens; 8.350070422 8.358418178 8.261716003 7.796894231 7.719111043 7.761800146 7.864635387 7.810703424 7.738653833 7.547045711 8.013150336 46519999 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.841032857 7.905555079 8.05508517 8.199316451 8.343250838 8.214127398 8.297504233 8.152598038 7.97264263 187728242 ChrA Metal Resistance Chromium Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 7.328448772 7.549091827 7.713835766 7.575065434 7.438796649 7.858369047 7.692819217 7.672065434 8.144012918 116198749 endoglucanase Carbon cycling Carbon degradation Cellulose Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 8.660753916 8.722925847 8.980630361 8.955544058 8.687448208 146193640 exaA Organic Remediation Chlorinated solvents Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.376361862 8.539160427 8.624443885 8.757935736 8.792420643 8.371727719 8.971279728 8.412347565 8.418744998 8.749762414 8.55464546 282564745 sigma_24 Stress Sigma factors Streptomyces sp. ACTE superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 9.139077477 9.324598328 8.851766099 8.783932607 8.650162004 8.638155245 8.812154626 8.8761409 121601888 pnbA Organic Remediation Aromatics Nitoaromatics Bartonella bacilliformis KC583 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella bacilliformis; 7.79252127 7.565179294 7.983938868 8.281414685 7.727852404 8.069298484 7.422613306 7.804595804 7.689102784 120603427 TerC Metal Resistance Tellurium Desulfovibrio vulgaris subsp. vulgaris DP4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 8.05176066 8.565215527 8.824012525 8.738776186 8.373392879 8.382858118 9.072246576 8.569826964 8.670394533 8.529639591 8.938731787 168703618 sigma_70 Stress Sigma factors Gemmata obscuriglobus UQM 2246 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata;species:Gemmata obscuriglobus; 7.833047957 8.066395793 8.057593568 7.986759999 7.682845641 7.320585552 7.76580893 8.184894002 7.687386717 7.713444164 7.722282491 116668957 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.64271634 7.394670865 7.488286265 7.578469926 7.29143833 7.574229846 7.139808088 7.151255792 182434113 sigma_24 Stress Sigma factors Streptomyces griseus subsp. griseus NBRC 13350 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 8.053842621 8.227775559 8.445367627 8.620863455 8.482784677 8.440936234 8.593717206 8.459602369 8.771275686 114316760 exaA Organic Remediation Chlorinated solvents Granulibacter bethesdensis CGDNIH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 8.17145785 8.094646803 7.294866332 7.568697966 7.628496488 7.335002503 8.051080283 7.395228911 6.985440036 119715160 pstC Stress Phosphate limitation Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.668010514 8.591242878 8.35661833 7.983867711 8.541842798 8.37248113 8.696350602 8.46754521 8.436455032 69288104 amyA Carbon cycling Carbon degradation Starch Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 7.762375401 8.491087152 7.660741545 7.407660557 7.024705059 6.748497751 6.97948161 7.428783285 7.061601853 7.137264499 7.222807709 256794056 pstA Stress Phosphate limitation Methanocaldococcus fervens AG86 7.865565308 7.978056052 3212093 katE Stress Oxygen stress endosymbiont of Onchocerca volvulus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales;family:Rickettsiaceae;genus:Wolbachia; 7.852346131 8.083266293 7.067334411 7.347526414 6.912839963 8.133158941 7.36055685 7.959541649 154157849 CadA Metal Resistance Cadmium Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 7.252758217 7.163939856 7.562108447 7.065344222 7.112874085 7.806180444 7.125632116 7.340602936 218713820 MFS_antibiotic Antibiotic resistance transporter Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 7.947876459 8.21474703 7.854953118 7.693926529 7.533606124 7.646353987 7.725308713 7.800400723 7.602764529 7.571648624 7.451494232 32350479 terminase_large_subunit Bacteria phage REPLICATION Enterobacteria phage RB69 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 8.606344741 8.463425474 8.600836516 8.740347382 8.727540142 8.49964797 8.924808313 8.363348579 8.808735323 8.944356973 8.461183157 156524374 gyrB other category gyrB Vibrio harveyi ATCC BAA-1116 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 7.858150674 8.084453572 8.735348008 8.408469718 8.89322704 8.100533411 8.309390641 8.311302617 85069138 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.828188397 7.867109717 7.508396021 7.620270824 7.897039394 8.040097457 7.99481497 7.604466373 7.796462215 33469591 ArsC Metal Resistance Arsenic Alcaligenes faecalis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes; 7.420059948 7.968946238 8.12325852 8.163263398 7.893228075 7.828102291 7.953630833 8.345685612 56710240 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 7.658634066 7.546030351 7.693241739 7.335710159 7.435933524 8.056991776 7.445833605 7.512626029 7.798548943 170777394 obgE Stress Radiation stress Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 8.006884021 8.197747555 8.369150719 8.081159982 7.881193793 8.309462555 8.140404527 8.329473339 8.205015593 8.401743044 8.199399723 110336265 ZntA Metal Resistance Zinc Acidovorax sp. JS42 8.240942553 8.692149023 8.647417812 8.948675064 8.697443963 8.549983247 8.931720358 8.913126087 26278924 narG Nitrogen Denitrification uncultured bacterium 8.138428891 8.398939876 8.507395649 8.384147923 7.871274565 7.627362614 8.560989491 8.21673622 8.55157083 8.369782579 8.447268947 217969610 sigma_70 Stress Sigma factors Thauera sp. MZ1T superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 8.121954943 7.658193005 7.814301975 7.747836522 8.167913083 7.694833203 7.572633424 7.698562665 194541262 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.286117213 8.665405817 8.511868865 8.120201538 8.808573438 8.517597904 9.001248491 9.228787471 8.673070009 193077044 pcc Carbon cycling Carbon fixation Acinetobacter baumannii ATCC 17978 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 7.958351938 8.184707748 16264706 Catechol Organic Remediation Aromatics Other aromatics Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 7.395275855 7.847857119 7.808296783 8.068909905 7.562272076 8.48174256 7.39414533 7.543272302 8.059559198 110621602 arsB Metal Resistance Arsenic uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 8.1439051 8.081425195 7.904605012 7.540842297 7.658429263 7.802614418 7.799906136 8.014756733 240251260 Tet Antibiotic resistance other Bifidobacterium animalis subsp. lactis DSM 10140 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 7.908313071 8.057107967 7.728379183 7.360990301 7.511959906 7.473849881 7.049038062 7.85249313 7.283676427 6.966609568 7.617035668 111220086 cydB Stress Oxygen limitation Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 8.438904675 8.30830361 8.411537079 8.094991979 8.855894791 8.022643074 8.443245609 8.65491239 8.438342716 19909671 gyrB other category gyrB Arhodomonas aquaeolei superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Arhodomonas; 8.433230889 8.404855453 8.138337483 8.169048833 8.21924741 7.619987324 8.295424419 8.265473001 8.009911385 8.035053008 281376898 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 9.037011099 9.166873054 8.523788756 8.406540393 8.244657388 8.0830834 8.081702276 8.363799018 8.386065564 8.49987449 52217468 ChrA Metal Resistance Chromium Bacteroides fragilis YCH46 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 8.624351824 8.330216403 7.671005847 8.131118906 8.624582403 8.778784218 8.573749995 8.497722858 8.567735544 8.821777665 8.529778102 56685231 SmtA Metal Resistance Miscellaneous Synechococcus elongatus PCC 6301 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus;species:Synechococcus elongatus; 7.01016325 7.17740343 7.283808742 7.449903832 6.907360854 7.036778176 255924085 fnr Stress Oxygen stress Actinosynnema mirum DSM 43827 7.131655845 7.40003269 7.234238822 7.213681174 7.745966789 7.313140027 7.308361448 7.330401512 157411422 napA Nitrogen Dissimilatory N reduction uncultured prokaryote 7.95770186 8.239672894 7.762410026 7.547185021 7.755885759 7.339112687 7.320771027 7.751329896 7.882670265 7.570974902 99038903 glnA Stress Nitrogen limitation Ruegeria sp. TM1040 7.998940166 7.943740986 7.796673629 7.809346758 7.833243219 7.733383077 8.076866821 7.95705603 8.227860204 7.981098713 8.092899147 32476530 groEL Stress Heat shock Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 8.161556166 8.19165451 7.59968505 7.64991438 7.429744417 7.444781324 7.271472541 7.809862366 7.337386067 7.649377592 113908814 pcc Carbon cycling Carbon fixation Shewanella baltica OS195 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 7.325771771 7.388554066 7.66415639 7.798811419 7.369950833 7.491252014 7.893224854 7.842861348 156109136 amyA Carbon cycling Carbon degradation Starch Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 7.074086978 7.043164583 7.089845719 7.303273263 7.351342152 254416971 fnr Stress Oxygen stress Microcoleus chthonoplastes PCC 7420 7.782072529 7.523314855 7.12515999 7.676770889 7.359633173 7.780414205 227454991 pstB Stress Phosphate limitation Corynebacterium aurimucosum ATCC 700975 7.82791903 7.692138965 7.625138985 7.893897694 7.935163104 7.909357158 7.705937503 7.803406138 7.682829192 224825720 pcc Carbon cycling Carbon fixation Lutiella nitroferrum 2002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Lutiella;species:Lutiella nitroferrum; 7.947281981 7.763169869 7.794834105 8.370107475 8.066867015 7.924769485 7.957634134 7.644572994 114334520 linB Organic Remediation Pesticides related compound Shewanella frigidimarina NCIMB 400 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella frigidimarina; 8.109099835 8.086672484 8.424511688 7.978758581 7.753071504 7.932767002 8.2000278 8.044984016 7.770936885 8.127609056 7.464376482 120593097 pimF Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 7.7955686 7.62468445 7.675940359 7.711373816 7.38699235 7.80388323 7.289102121 7.566687 7.607977252 94313299 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.20632809 7.85331187 7.807781678 8.044337155 7.798365572 8.196697358 7.905846902 7.916090161 7.912644772 169008377 ara Carbon cycling Carbon degradation Hemicellulose Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.920274847 7.575297599 7.448959794 7.589409427 8.082794138 7.953897844 7.739255745 7.707020807 7.950372961 219965733 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.180761239 8.289186463 8.045016093 8.004477857 7.727491649 7.923937627 8.056185551 7.736398142 8.164228044 7.982729189 7.52327726 13751041 PceA Organic Remediation Others Desulfitobacterium sp. PCE1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium; 6.918746223 7.263090839 7.170342721 6.965101855 6.580679237 7.55923837 93357652 catB Organic Remediation Aromatics BTEX and related aromatics Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 7.462372555 7.55033784 7.647646874 7.61489764 7.52336509 7.689455301 7.430230844 7.446253574 219858424 nagG Organic Remediation Aromatics Aromatic carboxylic acid Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 8.097993184 8.058628017 7.764282314 7.999541213 7.850337787 8.088824639 7.716766034 7.789092389 7.805269341 83026002 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 7.985147414 8.129792485 7.629067722 7.325503912 8.092108631 7.783674437 8.065775077 7.601173688 8.059407737 99036457 nreB Metal Resistance Nickel Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.861198724 8.154340044 7.870795684 8.399767706 8.125421135 8.284874647 8.086930106 8.09287799 8.137505995 268311449 fnr Stress Oxygen stress Thermomonospora curvata DSM 43183 8.234108051 8.359799869 7.935937183 7.08118387 7.728766809 7.95509962 7.611226561 7.663002652 7.598890771 7.66868974 83765536 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Aspergillus oryzae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 7.352183181 7.400943578 7.573716168 7.283590638 7.376877494 7.291084236 115399824 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.274812678 7.236396116 7.217810008 7.305598847 7.123649542 7.565346325 7.260452681 7.037863131 7.200879042 146866149 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Shewanella baltica OS223 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 8.238253369 8.460146112 8.566030867 7.847743624 7.713242497 7.956735601 7.717868983 7.876422162 7.487463379 67923821 ahpC Stress Oxygen stress Crocosphaera watsonii WH 8501 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Crocosphaera;species:Crocosphaera watsonii; 8.891908424 8.906619507 8.190065929 7.98775622 8.198921464 8.316147395 7.910692045 8.172604913 8.066799991 8.140376241 8.322425225 23392985 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.835447385 7.969125277 8.047347819 8.088521789 8.144479279 8.050808224 8.551856281 8.552692399 8.420073483 148553819 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 8.492476687 8.513038021 8.101451482 7.812457927 8.073977354 7.7595792 7.800346824 7.59409628 7.875224085 7.931223393 26278890 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.775741438 7.840835641 7.984067366 7.720938402 7.709192656 8.06055536 7.498603744 8.276524743 7.596452561 240168517 proV Stress Osmotic stress Mycobacterium kansasii ATCC 12478 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 8.015323591 7.990959453 8.066881728 7.936762224 8.274537572 8.230435914 8.291086932 8.010692722 8.084077092 52216911 pstB Stress Phosphate limitation Bacteroides fragilis YCH46 8.005419793 8.065514951 7.497640083 7.582954545 7.967859072 7.878718815 7.638406777 8.194710396 8.003300222 7.841901586 8.210795946 227547780 pcc Carbon cycling Carbon fixation Corynebacterium lipophiloflavum DSM 44291 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium lipophiloflavum; 8.099009421 8.156885286 7.027343764 7.343265832 7.318907808 7.024796252 7.166578266 7.391293268 7.418233081 90580479 endochitinase Carbon cycling Carbon degradation Chitin Vibrio angustum S14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium angustum; 7.858938324 8.180583103 7.987953789 8.214746611 8.01843765 7.833696901 8.045599463 7.961631404 113932190 ArsC Metal Resistance Arsenic Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.365663953 8.280966786 8.071429614 8.075795228 8.060587811 8.427295803 7.660886555 7.953876451 7.760627404 7.928296959 196257358 sigma_70 Stress Sigma factors Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.365704519 8.342288264 7.633253193 8.459117863 8.548178249 8.185004905 7.898853303 7.76993046 8.034482008 66963886 gyrB other category gyrB Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.363566324 7.746680055 8.090516221 7.592779276 8.208073949 7.461614386 7.761968487 7.599654164 17431979 norB Nitrogen Denitrification Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 7.622229339 7.757319342 7.713569817 7.49775153 7.658692007 7.698892277 7.908126793 7.696362335 260905495 fnr Stress Oxygen stress Brevibacterium linens BL2 7.485670699 6.959253904 7.144191779 6.784523985 6.939320202 7.634652225 6.980403483 7.171230678 109660081 ureC Nitrogen Ammonification unidentified bacterial contaminant superkingdom:Bacteria; 7.820399175 7.98119067 7.650132703 8.149137979 8.02061938 8.225850454 7.910018852 8.14040219 7.96080636 99036128 gyrB other category gyrB Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.464351803 7.687193608 8.015868252 8.33786728 7.499378311 8.443799105 7.857460651 7.75056662 8.105422661 110680804 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 7.586153103 7.504868281 6.95295854 7.569595392 7.892014609 7.414341429 7.197244874 7.774199531 5616323 mnp Carbon cycling Carbon degradation Lignin Ceriporiopsis subvermispora 8.564280404 8.437490359 8.422910553 8.338031012 8.329680426 8.459445134 8.386728669 8.440840934 8.589330435 8.647600905 8.45756837 155964467 nasA Nitrogen Assimilatory N reduction uncultured marine bacterium superkingdom:Bacteria; 7.945016311 8.032279206 7.770183394 8.295035236 8.18275528 8.070273312 7.921804708 8.179145622 8.127796468 282884408 iro virulence Burkholderia sp. CCGE1001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.208987742 8.288667032 8.481155158 8.178987037 8.395172025 8.211651958 8.461295774 7.818559552 12141285 major_capsid_protein Bacteria phage STRUCTURAL Bacillus phage GA-1 order:Caudovirales;family:Podoviridae;genus:Phi29-like viruses; 7.165886049 7.183068275 7.299616177 7.145900857 7.802657745 220710642 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.020775098 8.095827037 8.131586047 7.766383543 8.275538717 8.024442826 8.143558322 8.103380792 8.179569959 281297333 obgE Stress Radiation stress Peptoniphilus lacrimalis 315-B superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Peptoniphilus;species:Peptoniphilus lacrimalis; 7.764830178 8.235308179 7.481505449 7.218483249 6.784861001 7.450178806 7.09665268 7.402202481 46143191 dmsA Organic Remediation Others Actinobacillus pleuropneumoniae serovar 1 str. 4074 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus pleuropneumoniae; 7.622578246 7.671301914 7.831295029 8.131314781 7.259165984 7.737619143 7.237550958 7.529589217 7.853428037 133738787 hly virulence hemolysin Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 8.055065911 7.803869089 7.883254524 7.593516365 8.015625132 8.074729419 7.919151859 7.495911966 7.883762796 17429896 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 8.312843685 8.770474248 8.571209703 8.503276901 8.470444573 8.847322622 9.198439387 8.827305348 9.244993191 9.127837304 9.356544498 169629616 katE Stress Oxygen stress Mycobacterium abscessus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.080072347 8.078945801 7.80314098 7.520698971 8.431192915 8.298733609 8.019270038 7.852209527 7.945505283 112463637 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.148308234 8.11596024 7.855447058 7.993125567 8.376346346 8.297179282 8.212172588 8.141915803 8.370126896 225794263 sigma_24 Stress Sigma factors Acidobacterium capsulatum ATCC 51196 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteria;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 7.033363422 7.698047502 7.576565919 7.948563684 6.754481337 7.890224368 7.313254056 7.230364858 55980904 SMR_antibiotics Antibiotic resistance transporter Thermus thermophilus HB8 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 8.127171816 8.063254697 7.80175896 7.153783815 7.764833551 7.620993513 7.533623867 7.341324406 7.894873074 28542601 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.502501572 7.494689841 7.714147324 7.482462096 6.916620795 7.865803665 7.589452158 7.15648392 7.501413702 214043547 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.536939788 8.151987805 8.510052436 8.833428102 8.604401418 8.418469503 8.553877435 8.403100831 8.732914121 72394899 nifH Nitrogen Nitrogen fixation Methanosarcina barkeri str. fusaro superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina barkeri; 8.088702091 8.455761802 7.678213892 8.02780941 7.877158073 7.376118208 7.559055125 7.596974119 8.037018267 8.274072608 118047447 pulA Carbon cycling Carbon degradation Starch Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 8.129129696 8.306180046 8.931039832 8.687262323 8.642785547 8.99126006 9.0221053 8.546383148 8.89957335 8.645113306 8.843571451 221565531 cytochrome Energy process Energy process Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 7.773883502 7.450877277 7.387803187 7.00436433 7.356480479 7.241729638 7.246101032 16762492 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Salmonella enterica subsp. enterica serovar Typhi str. CT18 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 7.387927379 7.20353596 7.401273904 7.364386546 7.64647612 17129661 todF Organic Remediation Others Nostoc sp. PCC 7120 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc; 7.302474247 7.261729058 17429032 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 7.801752175 7.829106525 7.829237634 7.337656747 7.815873279 7.87846806 7.549057658 7.922539737 7.946527607 261209936 pilin virulence pilin Vibrio sp. RC341 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.72206361 7.818981163 7.783721678 7.957134937 7.763886344 8.011682721 7.796124928 7.743375072 7.974987787 iegHydrogenase5 hydrogenase Energy process Energy process 7.811809069 7.821423801 7.924099582 7.883641877 7.808482874 7.872522086 7.94476084 8.128239645 7.998410101 88643249 dsrB Sulphur sulfite reductase Desulfosalina propionicus superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfosalina; 7.173109852 7.46822702 6.930835732 7.469263229 7.655343019 7.258625687 6.970901471 170726769 cytochrome Energy process Energy process Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 6.789903019 7.276333936 229745710 sigma_24 Stress Sigma factors Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 7.34413471 7.2254896 7.289539166 6.82757987 7.497132795 144905750 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.348171137 7.885300144 7.503489224 7.680693862 7.729095228 7.73894963 7.641555622 167573182 type_III_secretion virulence secretion Burkholderia oklahomensis C6786 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia oklahomensis; 7.450781507 7.363002499 7.338520394 7.717697405 7.160303904 8.06689701 6.978889363 7.366794941 7.352226607 111613224 catechol_B Organic Remediation Aromatics Other aromatics Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 7.970308876 7.592562764 8.178678705 8.012370028 8.14539242 8.217728714 8.333126245 8.218104808 8.414334994 56697101 oxyR Stress Oxygen stress Ruegeria pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 8.096542909 8.184316565 7.828417069 7.868817948 7.736091963 7.858379283 7.655182949 7.743140324 7.986524514 7.686018798 7.596563491 103486874 nitA Organic Remediation Aromatics Other aromatics Sphingopyxis alaskensis RB2256 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 7.954063675 8.21501882 8.119263781 7.995145925 8.343744203 8.319814325 8.157780384 8.354540095 8.307193929 188028921 nmoA Organic Remediation Aromatics Nitoaromatics Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 7.476604463 7.241559408 7.309885835 7.181444009 7.592146223 207087270 gyrB other category gyrB beta proteobacterium KB13 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 8.28903125 8.546132891 7.841391087 7.825907416 7.508310257 7.566402679 7.435908161 7.948315636 7.69318865 7.673941824 7.653544993 158424074 nmoA Organic Remediation Aromatics Nitoaromatics Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 7.526325388 7.640354633 7.565315468 7.001226151 7.721389814 7.741469524 7.520566022 7.491639273 7.427328296 121594942 CopA Metal Resistance Copper Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 7.724933277 8.14124037 8.213714018 8.324793094 8.715066268 8.51038469 8.832477813 8.716627517 8.353443395 261252126 AceB Carbon cycling Carbon degradation others Vibrio orientalis CIP 102891 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 7.70154739 8.064412779 7.211746232 7.019780943 163813453 glnA Stress Nitrogen limitation Dehalococcoides sp. VS 7.793751565 7.858305978 7.760377721 7.928558943 7.2292337 7.961448594 7.831336075 7.916487672 91696320 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 8.345909223 8.434188314 7.628607469 7.901385058 8.237432054 7.945855417 7.800561805 7.949038893 7.996644864 8.233731009 118424311 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.785830188 7.489767706 7.739561796 7.028646759 7.314983673 7.797165794 7.574068806 146309341 ChrA Metal Resistance Chromium Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 7.401652166 7.5537254 7.896484774 7.551183429 7.619453173 7.40338389 7.856586358 259026864 pstB Stress Phosphate limitation Ferroglobus placidus DSM 10642 8.130592738 8.25150321 7.439601276 7.172200374 7.016900067 6.92897922 7.41868602 7.426479032 7.247766583 7.755495253 118705674 nagI Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.486592521 8.533882349 8.560045116 7.987938727 8.360651571 8.076984591 8.427970979 8.394181682 7.968742995 78217815 hydrogenase Energy process Energy process Desulfovibrio desulfuricans G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 7.714037355 7.403648121 7.845203027 8.033896101 7.540579088 8.035767806 7.509550492 7.485888835 160369828 B_lactamase Antibiotic resistance Beta-lactamases Achromobacter xylosoxidans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter; 7.796174434 7.580882614 7.584292463 7.966680043 7.556549155 8.210341927 7.543521034 7.463872185 7.630203619 151302245 APS_AprA Sulphur adenylylsulfate reductase Desulfobotulus sapovorans 7.15911902 6.91572139 7.18266614 47601232 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.399450969 7.619956417 7.921041057 7.132091475 7.923705195 7.684530642 8.036467794 7.612956532 167620102 silC Metal Resistance Silver Burkholderia thailandensis Bt4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 7.977445186 7.744125406 7.553073789 7.893863995 7.864334771 7.930899785 8.177377953 7.47100272 199597095 TerC Metal Resistance Tellurium Lactobacillus rhamnosus HN001 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 7.653214132 7.440132888 7.457201307 6.982513335 7.156139961 7.97108133 7.333510304 7.179605965 6.95182646 157736741 CopA Metal Resistance Copper Arcobacter butzleri RM4018 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Arcobacter;species:Arcobacter butzleri; 7.27105758 7.103347538 89068032 FTHFS Carbon cycling Acetogenesis Oceanicola granulosus HTCC2516 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 7.163864155 7.313558205 7.155395775 6.717579088 6.733641575 7.208712868 7.348990259 7.320129726 254424042 sigma_70 Stress Sigma factors Synechococcus sp. PCC 7335 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.232050992 7.286274447 6.971508457 7.387631677 7.771300584 7.514219471 7.515637549 7.029816941 71383909 nasA Nitrogen Assimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.179693055 7.27545281 6.893443445 6.733468749 7.365177536 118444929 tutFDG Organic Remediation Aromatics BTEX and related aromatics Clostridium novyi NT superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium novyi; 7.133362772 7.284481652 90338104 MATE_antibiotic Antibiotic resistance transporter Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 7.988957379 8.067448359 8.082271443 7.806891741 7.968364602 8.166240525 7.817437266 7.906558447 7.663084135 133738729 pbrA Metal Resistance Lead Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 7.457045752 7.22915428 7.411311901 7.263601607 7.122340071 7.535908123 7.545773529 119387816 bclA Organic Remediation Aromatics Aromatic carboxylic acid Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.262051343 8.038043004 7.838909166 7.358923179 7.992149164 8.248784951 7.762303357 7.96964362 7.74186165 7.649847347 7.694952848 217969709 fnr Stress Oxygen stress Thauera sp. MZ1T 7.35271269 7.365949989 7.016284185 7.355470839 7.399879351 7.297901437 7.456265364 116105044 gyrB other category gyrB Lactobacillus casei ATCC 334 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus casei; 7.466471133 7.49318946 7.569900635 126208939 sigma_70 Stress Sigma factors Actinobacillus pleuropneumoniae L20 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus pleuropneumoniae; 7.858475028 8.131130747 6.984546025 6.962571439 7.084509304 6.72893054 37524568 arcA Stress Oxygen limitation Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 7.39555686 7.607598232 120402742 alkB Organic Remediation Other Hydrocarbons Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.554675232 8.421995841 8.63574242 8.535435204 8.54579256 8.286525398 8.776813031 8.336918046 8.652100426 8.796736848 8.195181975 85704573 glnA Stress Nitrogen limitation Roseovarius sp. 217 8.300343192 8.269844593 8.487396259 7.753159427 8.474838557 8.013196748 8.171998244 8.449043051 7.759334178 218714167 atzA Organic Remediation Herbicides related compound Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 7.582487897 7.977544196 7.882978619 7.873362326 7.904743779 8.145602599 8.425521653 8.388424813 8.122578081 162146596 ahpC Stress Oxygen stress Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 7.187852423 7.163014186 7.281355962 6.797887499 7.077115728 7.049199141 7.214160802 74136896 phdJ Organic Remediation Aromatics Polycyclic aromatics Polaromonas naphthalenivorans CJ2 7.678460855 7.871072604 7.664278743 7.310832674 7.748038489 7.877533017 7.702181566 7.74853842 7.602319672 254414431 pstC Stress Phosphate limitation Microcoleus chthonoplastes PCC 7420 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus chthonoplastes; 7.536233485 7.859429659 7.645487282 7.201833723 7.58739239 7.584638057 7.679724791 7.610771727 51855367 nitro Organic Remediation Others Symbiobacterium thermophilum IAM 14863 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVIII. Incertae Sedis;genus:Symbiobacterium;species:Symbiobacterium thermophilum; 8.286183627 8.66011518 8.060276914 8.001230776 8.123265064 8.459975036 7.99269672 8.630266749 8.267967837 8.236125142 8.348131346 258635189 endochitinase Carbon cycling Carbon degradation Chitin Pantoea sp. At-9b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 7.022383127 7.153770753 7.000781905 6.95826867 7.178114066 7.229768733 219563110 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 7.631839814 7.659447205 7.825540838 7.087385419 7.691660167 8.039685836 7.47593904 7.432879959 7.466307618 145576103 phn Organic Remediation Herbicides related compound Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 8.341599664 8.151424252 8.166737874 7.754500202 8.466302613 8.037708833 8.296553919 7.847764485 8.10540358 118702859 nagI Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.004159103 8.155962183 7.978933467 8.387110847 8.129923375 8.274914284 8.329691589 8.413963887 8.123569405 24216893 gyrB other category gyrB Leptospira interrogans serovar Lai str. 56601 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira interrogans; 8.422377367 8.742499906 7.854790898 7.915328918 7.961105592 7.593975682 7.789298304 8.064267847 8.257632868 8.581997812 8.868843817 167896555 PobA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia pseudomallei 7894 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 8.494248111 8.45561265 7.974562933 7.971950302 8.057838025 8.493743105 8.131239245 8.693610097 7.879275741 7.964568706 7.954635194 87310114 sigma_70 Stress Sigma factors Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 7.305913245 7.438528955 7.402370046 7.029678512 6.862836535 7.582978244 7.272818699 7.172271065 7.737551618 188579452 fnr Stress Oxygen stress Methylobacterium populi BJ001 8.039781722 7.998655362 7.904264406 8.189479169 8.183370565 7.967511532 7.929104258 7.914313434 218266219 atzA Organic Remediation Herbicides related compound Clostridium hylemonae DSM 15053 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 8.225452917 8.388617651 7.798641625 7.943668941 7.942062147 7.794017294 8.14117098 7.83054443 8.145868493 8.258137696 8.033803179 157285442 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.78530822 8.195200954 7.063742246 7.125599699 7.529731455 7.273594641 7.450563361 7.597407902 7.47528405 7.261171032 91204560 hzo Nitrogen Anammox Candidatus Kuenenia stuttgartiensis 7.679636876 7.522730761 7.586365348 7.283659905 7.612730636 8.015926881 7.681880632 7.689517662 7.198416529 71908098 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 8.271217947 8.372226295 7.78662836 8.065842147 8.126436173 7.442323878 8.124503907 8.078596346 7.889455032 7.799916419 146400501 NDEDFP_EPS Bioleaching EPS Acidiphilium cryptum JF-5 8.193524654 8.215539289 8.268128307 8.188745056 7.770477092 7.889370201 8.167599185 8.267969188 8.301077649 8.118957532 7.54585798 170692248 SMR_antibiotics Antibiotic resistance transporter Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 7.659980956 7.943038439 7.991684605 8.264941237 8.054713233 8.509833942 7.668457475 7.902456031 7.614267024 219563140 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 7.407775651 7.4481801 7.344661861 7.602333931 7.547585954 7.631304734 7.355449258 7.451656195 7.297217354 56421223 pimF Organic Remediation Aromatics Aromatic carboxylic acid Geobacillus kaustophilus HTA426 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus kaustophilus; 8.300442066 8.405685827 8.424675985 8.483487326 8.171204129 8.200663277 8.636661676 8.276163053 8.449603846 8.358251258 8.062984764 119395258 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 7.306968942 7.235909599 7.362350742 7.526915057 227881764 ahpC Stress Oxygen stress Halogeometricum borinquense DSM 11551 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halogeometricum;species:Halogeometricum borinquense; 7.443669242 7.317606285 7.898859874 8.151265249 7.682931536 8.032916001 7.479543852 7.519356545 7.902805418 251846118 xylA Carbon cycling Carbon degradation Hemicellulose Paenibacillus sp. oral taxon 786 str. D14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 7.824250857 8.105774759 6.674524544 7.347676699 83943572 nhh Organic Remediation Aromatics Nitoaromatics Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 8.426528783 8.344799042 8.30539886 8.073872043 7.97744475 8.362114301 8.192230881 8.077915198 8.026492991 8.095524227 8.129079276 171059025 endoglucanase Carbon cycling Carbon degradation Cellulose Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 8.054969514 7.93848765 7.917413468 7.913891072 7.926524472 8.053707714 8.202577173 7.955309851 9971363 gyrB other category gyrB Tenacibaculum ovolyticum superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Tenacibaculum; 7.948723796 7.972083696 7.10468336 6.681855648 6.925422583 283812887 Tet Antibiotic resistance other Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 7.678766143 7.537204535 7.72896761 7.778010106 8.137846996 7.809320852 7.557410049 7.870082172 43439823 contractile_central_tail_tube_protein Bacteria phage STRUCTURAL Klebsiella phage KPP95 7.266719636 7.187138127 6.613014019 7.278011482 7.061571219 6.944740661 7.065605712 158251706 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 7.395972368 7.248654848 7.440728982 7.278179587 7.615455048 7.30389082 7.29512575 7.521560021 117983618 bclA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.765417839 8.253223331 8.264520316 8.006055252 7.652186846 7.61717478 8.138709653 8.196721797 7.94742254 7.727492759 7.913241685 178462689 pnbA Organic Remediation Aromatics Nitoaromatics Streptomyces griseus subsp. griseus NBRC 13350 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 8.48526138 8.27182715 8.049212235 8.40934745 8.195942289 8.103698368 8.304770932 8.297311734 8.148245655 41816642 sigma_70 Stress Sigma factors Treponema denticola ATCC 35405 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema denticola; 7.301549249 7.247601765 7.482087123 6.81278426 7.58419384 7.221463573 7.191700176 7.109317463 222081954 ahpF Stress Oxygen stress Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.038589068 7.683163367 8.358977121 7.679625994 8.442099408 8.098772799 8.021752589 8.412835699 7.773849075 197118748 silC Metal Resistance Silver Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 7.482796129 7.164455379 7.29257849 6.961561647 7.788266391 7.126522832 7.050936243 7.096305913 149197281 sigma_70 Stress Sigma factors Lentisphaera araneosa HTCC2155 superkingdom:Bacteria;phylum:Lentisphaerae;order:Lentisphaerales;family:Lentisphaeraceae;genus:Lentisphaera;species:Lentisphaera araneosa; 8.143203396 8.598404942 7.416102509 7.569353962 7.409093726 7.283331204 7.163332754 7.904655957 7.30380261 7.139764425 7.417405596 89086298 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bacillus sp. NRRL B-14911 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.543235631 7.720932903 7.58087519 7.346780202 8.005507346 7.869691973 7.931069639 7.693194802 158424125 pimF Organic Remediation Aromatics Aromatic carboxylic acid Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 9.331716399 9.151095806 8.872052753 149143139 phn Organic Remediation Herbicides related compound Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.491042043 8.40135108 8.211621347 8.105262595 8.364256268 8.595022195 8.407742677 8.697838868 8.400483446 8.6581519 147848062 ChrA Metal Resistance Chromium Synechococcus sp. WH 7803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.737080258 8.496522135 8.372949003 7.912516302 7.642024836 7.808151813 8.161218889 225093364 nplT Carbon cycling Carbon degradation Starch Clostridium sp. M62/1 7.384200077 7.335130137 7.602822059 7.839258919 7.220473131 8.080396145 7.345181879 7.304672478 7.735128293 119959257 katE Stress Oxygen stress Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.1921228 8.282303162 7.586817322 8.319867071 8.346359556 8.611729568 7.893920475 8.53163903 7.933423412 8.090470257 157913764 hrcA Stress Heat shock Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 7.761955049 7.794445607 7.529510351 7.801222041 7.646941764 7.797847958 7.806174602 7.865423048 7.560151294 81428847 dnaK Stress Heat shock Lactobacillus sakei subsp. sakei 23K 7.120433983 6.799667645 7.245507993 73294270 aclB Carbon cycling Carbon fixation Sulfurimonas autotrophica superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Sulfurimonas; 7.985209599 8.191083201 7.175039749 7.264358301 7.468029503 7.523883738 6.856894891 7.056378346 7.375691301 7.385223217 62084080 gyrB other category gyrB Streptococcus equi subsp. equi superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus equi; 8.440310988 8.501904384 8.363312558 8.139031767 8.2855971 8.730588407 8.35674326 8.432064432 7.900312533 91689859 CopA Metal Resistance Copper Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.024787424 8.336195635 7.886035058 8.009430656 7.952525611 8.027423715 8.259403082 8.263112152 8.357886815 7.997636815 7.970675048 198271542 grpE Stress Heat shock Bacteroides plebeius DSM 17135 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides plebeius; 6.99014491 6.964442087 222109011 nmoA Organic Remediation Aromatics Nitoaromatics Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.372352695 7.472592131 7.519680845 7.242015775 7.715957166 7.255445505 7.23667353 7.600008333 218680769 nmoA Organic Remediation Aromatics Nitoaromatics Rhizobium etli CIAT 894 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.955239753 8.162468146 6.996221183 7.4348085 190688660 amyA Carbon cycling Carbon degradation Starch Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 8.293933919 8.415615102 7.46410381 7.46859822 8.195735431 8.266474146 8.195181073 8.353012789 8.278036674 7.965986941 8.376455254 283820246 sigma_24 Stress Sigma factors Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 8.026637539 8.135182111 7.545899211 7.559888445 7.704459509 8.145613842 7.232755036 7.703903143 7.394947133 7.481356726 7.642293504 73763010 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.71537457 7.735785813 7.470725682 7.314020036 7.586058491 7.708892524 7.464151582 7.611850643 7.453774478 87281294 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.771494319 8.580702273 8.290642092 8.674751205 8.703371027 8.544952193 8.896625839 8.509886735 8.924825474 8.933717766 8.335675331 255107749 ahpC Stress Oxygen stress Sideroxydans lithotrophicus ES-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Sideroxydans;species:Sideroxydans lithotrophicus; 8.011781572 7.887531444 7.788255126 7.568921041 7.551446229 8.163934761 7.638376338 7.825797929 7.829055119 170702153 iro virulence Burkholderia ambifaria IOP40-10 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 7.384397272 7.478712445 7.760751867 7.660287925 7.570548092 8.152072454 7.651861332 7.390706517 7.604377172 171060316 SMR_antibiotics Antibiotic resistance transporter Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 8.476888426 8.579331048 8.810871786 8.861062563 8.543304575 8.596825143 9.17365463 8.74613863 8.612082523 8.397982045 8.882751196 119475716 pimF Organic Remediation Aromatics Aromatic carboxylic acid marine gamma proteobacterium HTCC2143 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.25362774 8.107793245 7.704849626 7.583665271 8.312958923 8.073408993 8.127573696 7.787888738 7.885444201 262402888 pstC Stress Phosphate limitation Vibrio sp. RC586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.932645836 8.191094637 7.843406616 7.830729461 7.730243438 7.50759972 7.549227007 7.89106264 7.665345662 7.52577622 7.256973079 42741693 pstC Stress Phosphate limitation Alcaligenes faecalis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes; 7.837017699 7.804888835 7.531170238 7.262787218 7.767831768 91795175 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.016204807 8.0801167 7.663937442 7.754897739 7.980169869 8.413112513 7.634942657 8.398589897 7.87909531 8.061575867 7.904810107 255708192 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.659179206 7.728291533 7.687237656 8.185276883 7.805719105 7.786371315 7.512157912 7.975078319 7.990172141 240267892 glnA Stress Nitrogen limitation Bartonella grahamii as4aup 7.551681088 7.676274647 7.230813663 7.684638326 7.482179015 7.551839524 7.320172766 182636123 ahpC Stress Oxygen stress Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 8.268630966 8.211784527 8.029996777 8.297963983 7.981841998 7.941319967 7.906769102 7.964053838 7.817697066 8.279225012 262275364 proV Stress Osmotic stress Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;species:Grimontia hollisae; 7.939881033 8.200502791 7.34058393 7.231134454 7.108500885 6.970075518 6.680020199 7.826805377 6.8263595 7.05708179 86169519 dnaK Stress Heat shock Weissella hellenica 7.283138741 7.102550847 7.024265897 6.566817208 7.177902055 6.852308471 6.787459255 7.253863767 157146418 dmsA Organic Remediation Others Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 8.210293232 8.003038247 7.802888704 8.046178637 7.858399687 8.040775085 7.971274021 7.962679757 7.539308656 21673475 dnaK Stress Heat shock Chlorobium tepidum TLS 7.609611521 7.550748074 7.656571549 8.376040441 8.001504913 8.247255316 7.795200755 7.815064463 8.123572052 115368799 vanA Carbon cycling Carbon degradation Others Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 8.175221956 8.061957775 7.563077546 7.453935395 7.731170124 8.05547597 7.540831853 7.280341229 7.436086398 7.560118988 94471299 narG Nitrogen Denitrification uncultured bacterium 7.73718756 7.727527907 7.703098586 7.582065326 7.555329688 7.965821 7.749844182 7.857711292 7.876343398 150031344 phn Organic Remediation Herbicides related compound Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 7.823137347 7.735142347 7.602597611 7.275090577 7.504384539 7.753660871 7.599158309 7.643705632 77996979 dsrA Sulphur sulfite reductase Carboxydothermus hydrogenoformans Z-2901 8.266714574 8.633308397 7.152455761 7.22031202 7.644026413 8.07515661 7.529263211 7.598736895 7.308830927 7.709524747 148651896 TerZ Metal Resistance Tellurium Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 7.283082109 7.398517186 7.260429512 6.753069683 7.653347393 157374123 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 7.778861325 7.12207047 7.784306784 7.382514363 6.988557019 161165251 pcpB Organic Remediation Herbicides related compound Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 8.884486745 8.68761472 8.896114501 8.665204363 8.980818802 8.855357907 8.611443382 8.745228313 40742599 pheA Organic Remediation Aromatics Other aromatics Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 8.828113333 9.20452192 8.891194761 9.005350881 8.814533173 9.055651867 9.386879439 8.794698501 9.598604485 9.087898864 8.954093028 239797924 katE Stress Oxygen stress Desulfovibrio magneticus RS-1 9.056045373 8.949613235 8.276162001 8.637664397 8.858579949 9.342908048 8.12898648 9.20655061 8.436939629 8.16961139 8.578390926 56314391 ZntA Metal Resistance Zinc Azoarcus sp. EbN1 7.476782804 7.213835829 7.559741295 7.920604354 7.927021299 7.25879343 7.070074875 7.752279152 110630868 nifH Nitrogen Nitrogen fixation uncultured soil bacterium superkingdom:Bacteria; 7.970727961 8.200672629 7.469413509 7.289945289 7.312924307 7.087024645 7.022148469 7.6622423 7.366136011 7.40129371 7.510985315 113935963 nagI Organic Remediation Aromatics Aromatic carboxylic acid Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 7.138126173 7.115448943 6.89315942 6.729773895 7.217789419 86566917 amyA Carbon cycling Carbon degradation Starch Frankia sp. CcI3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 7.562758086 8.055412813 7.45725501 7.7266045 7.854474923 7.559027667 7.539091133 7.539944935 71018649 nagG Organic Remediation Aromatics Aromatic carboxylic acid Ustilago maydis 521 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Ustilaginomycetes;order:Ustilaginales;family:Ustilaginaceae;genus:Ustilago;species:Ustilago maydis; 7.401387134 7.617608763 7.7069242 8.099568456 7.258961615 8.436448386 7.614715884 7.532178781 7.828222669 154509443 mer Metal Resistance Mercury Actinomyces odontolyticus ATCC 17982 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces odontolyticus; 7.501222381 8.157449651 7.898653918 7.916792527 7.846255499 8.009861391 7.61110186 7.829792908 7.419211292 257799102 glnR Stress Nitrogen limitation Enterococcus casseliflavus EC30 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus casseliflavus; 8.270405369 8.350497037 8.139951675 7.846679351 8.098129153 8.228741596 8.256766485 8.515412796 8.185704815 8.140205933 7.906792424 119537451 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.450756724 8.387256437 7.707273846 7.899242964 8.243144631 7.761626899 8.404237769 7.905135234 7.862382315 8.134378573 17570825 major_capsid_protein Bacteria phage STRUCTURAL Enterobacteria phage T3 order:Caudovirales;family:Podoviridae;genus:T7-like viruses; 7.570382794 7.152268161 7.259118251 7.249594067 7.629555648 229816772 ppk Phosphorus Phosphorus utilization Bifidobacterium angulatum DSM 20098 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium angulatum; 7.088866989 7.307985809 6.943940513 7.115663668 7.326514492 7.49004737 7.361912054 7.47997958 7.331142366 241190129 ara Carbon cycling Carbon degradation Hemicellulose Bifidobacterium animalis subsp. lactis Bl-04 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 7.572869592 7.407608083 7.729116582 7.564248055 7.386907437 7.973944319 7.754166946 7.692735381 7.526463821 146188551 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.08919861 7.368080165 7.003280277 7.173657972 7.651040045 7.294951663 7.638981578 259507041 ureC Nitrogen Ammonification Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 7.836141767 8.082394412 7.621469026 7.625254004 7.735755157 7.91034044 7.749561838 7.594981023 7.154421908 213536813 exoglucanase Carbon cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 8.144292932 8.121055558 7.56026526 7.851246112 8.058828865 8.461864709 7.613838304 8.437803634 7.716914583 7.482719456 7.86345001 223986236 bglH Stress Glucose limitation Holdemania filiformis DSM 12042 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichi;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Holdemania;species:Holdemania filiformis; 8.428679241 8.723157503 8.444403326 8.257334815 8.084663727 8.357401977 8.688379008 8.493636874 8.549563468 8.409810224 8.662088106 145218835 gyrB other category gyrB Prosthecochloris vibrioformis DSM 265 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeovibrioides; 7.648621022 7.096418535 7.813233245 7.352758739 7.108718607 8.249227867 7.196924602 7.464069954 7.40178965 118705669 nagI Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.455611706 8.299064339 7.655682345 7.659641217 8.203709325 8.133207194 7.82058977 8.173234928 7.966040576 7.987321257 8.049254796 167358786 scnABC Organic Remediation Others Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.348504005 8.535465566 7.811919715 7.660710421 7.979069466 8.146532672 7.982367838 8.330196703 8.117968963 7.664263413 7.865748821 73660244 mer Metal Resistance Mercury Dehalococcoides sp. CBDB1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.91688492 8.465323675 8.509423246 8.786075327 8.286107553 8.970840992 8.328126743 8.327986191 8.329650064 193087394 BchY other category chlorophyllide reductase Chloroherpeton thalassium ATCC 35110 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chloroherpeton;species:Chloroherpeton thalassium; 7.785926097 8.209587694 7.19901395 7.275472541 7.188763888 7.034658447 6.673351724 7.381880432 7.255121447 7.509755746 7.795092159 151575350 ArsC Metal Resistance Arsenic Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 7.837830839 8.295209335 8.085653796 8.084081155 7.973655459 7.399750883 8.113776569 7.894758755 7.919874317 7.372040896 222451842 pstB Stress Phosphate limitation Halorubrum lacusprofundi ATCC 49239 7.865404136 7.210396277 7.551748485 7.375139673 7.622592546 7.654883473 7.339631339 7.359062969 7.634598232 52306369 glnA Stress Nitrogen limitation Mannheimia succiniciproducens MBEL55E 7.81558023 8.017030721 6.997800799 6.978052246 89098392 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Bacillus sp. NRRL B-14911 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.884198974 7.998752092 7.783051779 8.231195622 7.702108593 8.244100168 7.84347597 7.988326271 7.757497312 88183626 endochitinase Carbon cycling Carbon degradation Chitin Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 7.818218464 7.895456358 7.812852637 7.994436365 8.011109157 7.835389954 8.098741898 7.843002468 226088799 glnA Stress Nitrogen limitation Gemmatimonas aurantiaca T-27 8.267174514 8.184834302 7.73852983 7.234188326 7.552043704 7.756952328 7.564600607 7.985485419 7.443364467 7.514370539 7.593313631 157084186 ahpC Stress Oxygen stress Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 7.498461997 8.127950237 7.837658269 7.660190051 8.304064373 7.872692506 7.699729747 8.098955181 212716924 groEL Stress Heat shock Bifidobacterium catenulatum DSM 16992 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium catenulatum; 7.900156453 7.897793206 7.696029287 7.953222603 7.372909384 7.497696467 7.955315047 7.785900395 7.950425837 7.760228997 7.779863851 255530883 B_lactamase_C Antibiotic resistance Beta-lactamases Pedobacter heparinus DSM 2366 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter;species:Pedobacter heparinus; 8.094915748 8.257179119 7.493573883 7.442592899 7.614303517 7.52996613 7.460119928 7.73295968 168194586 SmtA Metal Resistance Miscellaneous Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 7.865676851 7.529259002 7.734108197 7.796363379 8.268915067 8.141851039 8.108141974 8.085205537 7.955570503 213923415 ArsC Metal Resistance Arsenic Pseudomonas syringae pv. tomato T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 8.410728558 8.347823123 7.913490486 7.753278594 7.818804893 7.79690914 7.674780039 8.094088695 7.636078454 7.540167624 7.787379532 157372735 AceA Carbon cycling Carbon degradation others Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 7.92017206 8.350596669 8.916204825 8.960287477 8.856100618 8.871276726 8.646140777 8.650917011 46448864 mer Metal Resistance Mercury Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 7.48909116 7.603987025 7.55760213 7.499507095 7.441568032 7.903126663 7.532897213 7.285113246 7.469827014 228860993 T4_recomb_endonuclease Bacteria phage REPLICATION Enterobacteria phage RB51 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 8.007390417 7.953239425 8.320683758 8.197318525 8.484067863 7.41738993 8.203394675 8.104549381 7.999016602 8.442345635 7.888084995 255652773 amoA Nitrogen Nitrification superkingdom:Archaea; 7.675633544 7.976411495 7.805750471 7.955866115 7.993745811 8.043170394 8.200466459 8.192458431 7.601738533 260094207 ureC Nitrogen Ammonification Haemophilus influenzae NT127 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus influenzae; 7.941481947 7.062247652 6.942823352 7.652136229 8.233291364 7.909994949 7.888649061 262279907 oxyR Stress Oxygen stress Acinetobacter calcoaceticus RUH2202 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter calcoaceticus; 7.323999963 7.166624807 7.330906989 6.883912278 7.669681401 125862066 rubisco Carbon cycling Carbon fixation Methanoculleus marisnigri JR1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanoculleus;species:Methanoculleus marisnigri; 8.263593652 8.364760153 8.730929411 8.612138227 8.526312882 8.302506636 8.728576638 8.339669027 8.599503503 8.688204983 8.059440221 86284648 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.093389167 8.350828337 7.381055394 7.194189503 7.302694063 7.37813443 7.084438052 7.957944914 7.105637449 7.099179465 7.450271509 213928212 vanA Carbon cycling Carbon degradation Others Pseudomonas syringae pv. tomato T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 9.079325328 8.652167783 8.53073128 8.187851706 8.861570427 8.147090365 220715072 tfdA Organic Remediation Aromatics Chlorinated aromatics Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.771780525 7.630217798 7.638486311 8.300788117 7.81804439 8.354772435 7.758857776 7.573960223 7.691240597 160365479 iro virulence Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.837497603 8.095741279 8.082502309 7.980292419 8.126840412 8.191675003 8.028055103 7.69876806 7.899365041 7.82850905 56180216 pstB Stress Phosphate limitation Idiomarina loihiensis L2TR 7.338524735 7.328141689 7.045025891 6.779013112 6.985404172 7.486866951 218261736 tutFDG Organic Remediation Aromatics BTEX and related aromatics Parabacteroides johnsonii DSM 18315 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides johnsonii; 7.952399555 8.127953726 7.92100352 8.070909928 8.004554033 8.143360523 8.200649616 8.191084224 7.726763087 260223248 ahpC Stress Oxygen stress Curvibacter putative symbiont of Hydra magnipapillata superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 7.21690956 7.42099079 7.216272149 7.007436109 7.245928862 7.404938055 7.4135032 257447599 pilin virulence pilin Enhydrobacter aerosaccus SK60 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Enhydrobacter;species:Enhydrobacter aerosaccus; 7.455662456 7.416800657 7.395439745 7.071251157 6.97550858 7.810371228 6.996018474 7.282821294 237625907 fnr Stress Oxygen stress Thauera sp. MZ1T 8.600319768 8.359907314 8.192592877 8.328601816 8.465069205 8.457302262 8.320407744 8.419119548 8.178278315 205374943 CopA Metal Resistance Copper Bacillus coahuilensis m4-4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coahuilensis; 7.51461851 6.976389015 6.76278672 6.748936162 194308531 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Pelodictyon phaeoclathratiforme BU-1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 8.279033191 8.294354124 7.825502773 7.540132604 7.7611443 7.473496035 7.580075161 7.444249789 7.720503004 7.540603484 255340511 fnr Stress Oxygen stress Flavobacteriaceae bacterium 3519-10 8.416334525 8.328544189 7.973233171 7.633898459 8.461106666 8.411268902 8.016448155 8.144568807 8.240724449 8.317409402 238601814 phenol_oxidase Carbon cycling Carbon degradation Lignin Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 8.201746373 8.575353908 7.032837618 7.51049384 7.464764571 8.195892542 7.664826084 7.09664955 7.56060888 89512860 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.05077014 8.505830096 8.096496433 8.014487557 7.902309667 7.80489803 8.097006222 8.241606329 8.013008945 7.71249921 7.685434377 212558181 alkK Organic Remediation Others Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 7.240390039 7.387543383 7.46059088 7.241536255 7.605399798 7.136515119 7.373507793 7.335863017 239805955 ctsR Stress Protein stress Geobacillus sp. WCH70 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.198093818 7.144309066 134142983 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 8.35573216 8.394529106 8.243545622 8.162022142 7.907040775 7.844361904 8.202205844 8.424852576 8.016431455 7.826250992 8.123581597 13537293 nplT Carbon cycling Carbon degradation Starch Thermoactinomyces vulgaris 7.448114842 7.243333831 7.321358968 6.960192629 7.037157194 7.588263838 7.268060124 7.02144403 7.376987374 259022600 Tet Antibiotic resistance other Rhodobacter sp. SW2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 8.240169605 8.357189455 7.945180714 8.584522606 8.611195659 8.211321571 8.640684397 8.217395945 8.75940815 8.151121371 157960168 cytochrome Energy process Energy process Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 7.423534213 7.564817412 7.855508117 7.780088288 7.729857894 8.074103483 7.966334095 7.94692678 7.643587262 21111990 ppx Phosphorus Phosphorus utilization Xanthomonas campestris pv. campestris str. ATCC 33913 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 8.986432189 8.807417319 9.008005007 8.49362686 9.163637383 9.008763703 9.438537841 9.131557546 9.119692642 8.790956681 118435745 TerC Metal Resistance Tellurium Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 8.606227671 8.847078806 8.438888753 8.335732206 8.921129337 8.490862207 8.595221477 8.596228746 8.337386706 56677530 phn Organic Remediation Herbicides related compound Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 8.998784607 8.832760082 8.810206888 8.768723861 8.662853545 8.639305203 8.874403311 8.940938608 8.726036319 8.790913228 8.827566961 6459661 hly virulence hemolysin Deinococcus radiodurans R1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 7.971171295 8.203555332 7.397101803 7.358454905 227973850 pstA Stress Phosphate limitation Brachyspira murdochii DSM 12563 8.184368031 8.604660229 7.756656285 7.539687503 7.883234071 7.262652473 7.420956564 7.709815623 192803395 amyA Carbon cycling Carbon degradation Starch Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.605157404 8.37462655 7.997965023 8.236972764 8.227785504 8.520339455 8.841568191 148259248 glycosyl_transferase_EPS Bioleaching EPS Acidiphilium cryptum JF-5 7.358796377 7.410749472 7.067541784 7.032049957 6.919200461 7.193471045 7.315417263 7.048629129 81176591 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.967033566 8.200242359 8.134515995 8.1880079 8.151815329 7.751226492 8.492676063 8.048436555 8.1266797 8.374582972 8.35497172 254403560 ara Carbon cycling Carbon degradation Hemicellulose Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 8.355514679 8.176913328 7.928997813 7.8829099 7.979971136 8.14956819 7.965933041 7.840554154 7.733417995 5738785 pnbA Organic Remediation Aromatics Nitoaromatics Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.506185234 8.511686868 8.514546965 8.450016483 8.150086894 8.312153379 8.838115978 8.448244236 8.930176869 8.488103603 8.486822691 149817293 TehB Metal Resistance Tellurium Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 8.030418447 7.903268708 7.955739209 7.93255637 8.295132315 8.164333541 8.06069124 7.919846009 7.898650719 71279079 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Colwellia psychrerythraea 34H superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Colwelliaceae;genus:Colwellia;species:Colwellia psychrerythraea; 8.644688698 9.061199432 254462656 glnA Stress Nitrogen limitation Rhodobacterales bacterium HTCC2083 8.301029303 8.086241 7.80331631 8.126559593 8.512177123 8.51663409 8.607956179 8.605350622 8.807390308 8.657509214 73539682 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.593493968 8.336245054 8.045126392 8.222340414 8.202043949 8.174129664 7.565386746 7.911111526 7.862382315 8.132301584 182414493 clpC Stress Protein stress Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 7.213774154 7.280432549 7.393566454 7.165647411 7.477852077 87286724 fnr Stress Oxygen stress Blastopirellula marina DSM 3645 8.397115677 8.551264753 8.542181762 8.495201669 8.169195641 8.504179669 8.395182966 8.770414535 8.478105179 8.772495069 8.209985072 221728672 gyrB other category gyrB Diaphorobacter sp. TPSY superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax ebreus; 7.908698736 8.134905552 8.025773876 7.857384039 8.602536319 8.506187834 8.626179779 8.488774636 8.246486084 170135699 fnr Stress Oxygen stress Burkholderia ambifaria IOP40-10 7.170349459 7.660679697 7.354510695 7.000003735 7.869884352 7.110678598 7.154269 148520147 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 8.172881491 7.931610735 7.71196124 8.267541139 8.2037568 7.894020595 8.439919964 7.892560135 7.876067553 83017273 gyrB other category gyrB Microbulbifer sp. MBIC08258 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Microbulbifer; 7.375585557 7.404898763 7.323993813 7.223766249 7.546311295 7.394101395 6.925153077 7.574080764 665930 phenol_oxidase Carbon cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia; 7.323870836 7.337661303 6.909068295 7.516566789 6.829384496 7.043194782 226322915 cda Carbon cycling Carbon degradation Starch Coprococcus comes ATCC 27758 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Coprococcus;species:Coprococcus comes; 8.020155536 8.35138352 7.626288841 7.823873498 7.745150988 8.023028161 7.552236428 7.99243874 7.443936198 7.538889902 7.89026742 208973052 gyrB other category gyrB Paenibacillus polymyxa superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.295270235 7.168544611 7.154443418 7.083147095 6.993417884 197788007 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 8.445072084 8.580695308 8.792821896 8.411190577 8.879024607 8.916081732 8.962701074 8.77028872 226303935 katA Stress Oxygen stress Rhodococcus erythropolis PR4 8.343589073 8.273658194 7.81489415 8.349552241 8.378732659 8.533254723 8.695337 7.517226366 145316761 AceB Carbon cycling Carbon degradation others Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 7.594134645 7.045832866 7.435231156 7.502645388 7.266181381 8.00922902 7.315575746 7.21078041 7.691478097 83943682 sox Sulphur Sulphur oxidation Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 7.844296821 7.954936553 8.222274717 7.962291733 8.258153607 8.055238895 8.160367853 8.301691101 8.143212546 92115334 mer Metal Resistance Mercury Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 7.612879158 7.443051051 7.530290879 7.985695041 7.234135384 7.195260414 7.403226199 171854207 exochitinase Carbon cycling Carbon degradation Chitin Moritella marina superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Moritellaceae;genus:Moritella; 7.926956324 8.081150646 7.332626332 6.999110887 7.149670825 6.803435949 6.982368617 7.218767943 161505242 phn Organic Remediation Herbicides related compound "Salmonella enterica subsp. arizonae serovar 62:z4,z23:--" superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 8.902235875 8.542190255 8.098458174 8.64702656 8.613881661 8.594823053 8.469317325 8.273743864 8.391420551 148238483 gyrB other category gyrB Synechococcus sp. WH 7803 8.524542487 8.579532583 8.22110893 8.117421951 7.900380257 8.101538275 8.202614798 8.093362181 7.749299965 7.944546623 7.899862622 68135467 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.792669784 8.05114392 6.990491057 7.159013044 7.108596416 83313178 obgE Stress Radiation stress Magnetospirillum magneticum AMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 8.02383622 8.390932142 8.111525586 7.959592055 7.566545331 7.8409403 8.054477456 8.141253017 8.216437162 8.035513641 8.169099324 53758878 NiR Nitrogen Assimilatory N reduction Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 8.139501934 8.346482542 8.384255694 8.34857283 8.229923481 8.676381552 8.279910054 116662145 CadA Metal Resistance Cadmium Arthrobacter sp. FB24 8.525233104 8.719404124 8.122243484 7.955992271 8.052710237 7.599728922 7.718126647 7.998615206 7.885818124 7.820720258 7.873621499 91223147 endochitinase Carbon cycling Carbon degradation Chitin Vibrio alginolyticus 12G01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 7.967911632 7.932302415 7.50177919 7.491696608 7.531239978 7.341913015 7.535841668 7.45636908 7.608311672 7.85488773 151562451 CopA Metal Resistance Copper Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 7.794468691 7.675081044 7.934892847 7.636563564 7.693382811 8.121429753 7.727200311 7.271161912 7.619275808 152974667 AceA Carbon cycling Carbon degradation others Bacillus cereus subsp. cytotoxis NVH 391-98 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cytotoxicus; 7.73744655 8.075072009 7.133788571 7.340348278 7.174055346 6.949148599 150836824 xylA Carbon cycling Carbon degradation Hemicellulose Marinomonas sp. MWYL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 7.123730883 7.062437101 7.115272975 7.081135919 7.066787062 11078845 gyrB other category gyrB Pseudomonas agarici superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.531927307 7.150668079 7.381656374 6.919582956 7.286975695 11139253 ahpC Stress Oxygen stress Ajellomyces capsulatus superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces; 7.564207975 7.453846241 7.410006617 7.139647688 7.976057685 7.627570728 7.26393336 7.340959012 73539477 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.283771563 7.518993056 7.720625068 8.095297735 7.07264447 7.471819739 7.270713106 7.453348378 241463369 sox Sulphur Sulphur oxidation Allochromatium vinosum DSM 180 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 8.189275724 8.265288108 7.833739495 7.257308086 7.678214262 7.782032218 7.531425511 8.03177037 7.564090012 7.433337242 7.668900857 13423939 vdh Carbon cycling Carbon degradation Others Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 8.180562592 8.599507197 8.464565919 8.442042049 8.190267346 8.319711909 8.883555279 8.221548673 8.494273177 8.256397533 8.381593471 72398121 CODH Carbon cycling Carbon fixation Methanosarcina barkeri str. fusaro superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina barkeri; 7.95450778 7.961164125 7.829466105 7.153430662 7.791224417 7.699183639 7.91821977 7.997685451 7.354514563 45386121 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 8.000073991 8.353503961 7.921654951 8.032997596 7.808609794 7.98838936 8.229094427 8.122900906 8.265479148 8.005741331 7.945788242 150015203 sigma_24 Stress Sigma factors Clostridium beijerinckii NCIMB 8052 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium beijerinckii; 7.703470081 7.874488995 6.874981187 6.93810386 117647767 pstA Stress Phosphate limitation Acidothermus cellulolyticus 11B 7.73175085 7.578619612 7.616954163 7.440671656 7.761028998 8.070527868 8.125016837 8.034318579 31088842 phenol_oxidase Carbon cycling Carbon degradation Lignin Ceriporiopsis subvermispora superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Ceriporiopsis; 7.549084176 7.203552958 152969804 iro virulence Klebsiella pneumoniae subsp. pneumoniae MGH 78578 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 8.300823809 8.29698962 8.172749951 8.128199642 7.971235843 7.729003117 8.157616836 8.158114203 7.928470619 8.025374185 8.014697418 33391367 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.516408063 7.829456363 7.926999947 8.265387413 7.8569018 8.037034429 7.646707694 7.759521909 7.611818722 118473579 pnbA Organic Remediation Aromatics Nitoaromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 7.991381099 7.504960647 7.794383213 7.936357128 7.66131198 8.385762927 7.350154623 7.829562777 7.47566021 56421872 ChrA Metal Resistance Chromium Geobacillus kaustophilus HTA426 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus kaustophilus; 8.417887856 8.56122123 7.780531462 7.68371008 7.570595985 7.787905084 7.68876401 7.643407456 7.880741898 7.832885535 190685802 fnr Stress Oxygen stress Cellvibrio japonicus Ueda107 7.168458526 7.443229338 7.494598673 7.189748196 7.05570559 7.61682342 7.409830094 7.360362276 7.456844822 221725500 phoB Stress Phosphate limitation Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.926537702 8.010137449 7.391571408 7.164198941 7.344947224 6.978432244 7.391053203 7.168122313 7.032156394 7.284262211 150377217 catB Organic Remediation Aromatics BTEX and related aromatics Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 8.062230841 8.144227132 7.935676556 8.163412637 7.989531843 7.88704763 8.112958668 7.973554126 7.745687733 262081675 amyA Carbon cycling Carbon degradation Starch Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Haliangiaceae;genus:Haliangium;species:Haliangium ochraceum; 8.017887185 8.556988933 8.718972152 8.941648214 8.638244283 8.012788841 8.632169722 8.342656228 8.564597536 8.672692998 8.920478094 72119265 pstB Stress Phosphate limitation Ralstonia eutropha JMP134 8.218636587 8.199324551 8.243206961 8.271429813 8.098664286 7.909008894 8.179374626 8.353807667 8.14318778 7.950341304 8.14582808 15606302 dnaK Stress Heat shock Aquifex aeolicus VF5 7.54090542 7.589292473 7.541490085 7.504959145 7.109101317 7.226169067 7.496276467 7.138700718 77378679 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.110176908 8.243697362 8.114781111 8.286382075 8.216093821 8.276638183 8.50656112 8.274844668 8.086983368 86573289 fnr Stress Oxygen stress Rhodopseudomonas palustris HaA2 8.362135532 8.491324219 8.634251005 8.196647573 7.863967375 8.280625571 8.396654863 8.577252596 8.182819391 7.911133751 7.879975354 225160363 cda Carbon cycling Carbon degradation Starch Clostridium hylemonae DSM 15053 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 7.613960648 7.520332745 7.475125712 7.31405973 7.656376226 7.23611283 7.449591348 76556358 bclA Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas; 7.455452028 7.729939922 7.450158864 7.572448683 7.632334687 8.033606943 7.793511888 7.474931635 7.573024724 188581801 CopA Metal Resistance Copper Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 8.246256695 8.296341711 7.672892646 7.915311353 7.81695121 7.779363302 8.088344679 7.933534439 8.156708014 8.23652003 8.203900509 162568495 aoxB Metal Resistance Arsenic Variovorax sp. 4-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax; 8.891861971 8.924624695 8.166562457 8.162488722 7.994145153 8.065729302 7.637028405 7.854108809 7.693171745 8.329146495 170693199 fnr Stress Oxygen stress Burkholderia graminis C4D1M 7.886234704 8.108621257 8.053961414 7.994805076 7.614310811 7.612360888 8.130733523 7.989513674 7.95205829 7.839292572 8.220908907 115251243 nplT Carbon cycling Carbon degradation Starch Clostridium difficile 630 6.737583936 7.496956224 126732580 SilA Metal Resistance Silver Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 8.672842365 8.574768201 7.696493519 8.57267327 8.580128051 8.320500555 8.380325439 8.371627801 193086210 sox Sulphur Sulphur oxidation Chlorobaculum parvum NCIB 8327 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum parvum; 8.760981265 8.797169935 8.835686638 8.707650696 8.399457598 8.606369837 8.64355399 8.163628714 8.732916137 8.652013265 8.200252818 154702760 AceA Carbon cycling Carbon degradation others Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 7.891048503 8.115733182 7.285749605 7.133737696 209884016 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 7.962887378 7.862767576 8.150233458 7.946354162 7.964509475 8.087755892 8.538570201 169759009 amyA Carbon cycling Carbon degradation Starch Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.977125771 7.921270515 7.742688525 7.750453301 8.082302461 8.247467398 8.194383911 8.110330788 7.99075464 229329222 SMR_antibiotics Antibiotic resistance transporter Geobacillus sp. Y412MC52 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.311848544 8.528320146 8.049773867 7.919593232 7.773477766 7.492275035 7.461061808 7.422952588 7.93594716 83366922 amyA Carbon cycling Carbon degradation Starch Rhodobacter sphaeroides ATCC 17029 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 7.72939905 7.922654903 7.450701825 7.334979983 8.017948613 7.903043436 7.973004239 8.038958698 7.937533653 226229027 sigma_24 Stress Sigma factors Gemmatimonas aurantiaca T-27 superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 7.139517929 6.842530597 7.894366699 227822371 proV Stress Osmotic stress Rhizobium sp. NGR234 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 7.65513941 7.909753453 7.603680233 7.598914868 7.551344507 7.742404795 7.948193361 7.57674618 237875773 MATE_antibiotic Antibiotic resistance transporter Burkholderia glumae BGR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia glumae; 8.163819573 8.44518839 7.940045301 8.323865332 8.45786907 7.72862313 8.390113856 7.62862003 7.984372177 7.843311592 237802322 endochitinase Carbon cycling Carbon degradation Chitin Pseudomonas syringae pv. oryzae str. 1_6 8.129503101 8.100958226 7.346660691 7.60061772 7.712194278 7.652166242 7.63428544 8.082941856 7.358331 7.493223537 7.560641682 114798640 narG Nitrogen Denitrification Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 7.375571983 7.379484806 7.365056101 7.480406374 7.002729481 7.60243973 7.270259812 7.376613401 213852761 nrfA Nitrogen Dissimilatory N reduction Salmonella enterica subsp. enterica serovar Typhi str. M223 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 8.072839472 8.126430045 7.912348397 8.323546588 8.20471885 8.199150738 8.020374451 7.721023263 112463359 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.014321889 8.24144602 8.399715666 8.197841046 8.530481121 8.068487899 8.435970913 8.678906251 8.576939461 116254841 nmoA Organic Remediation Aromatics Nitoaromatics Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.352256102 8.590677959 8.296762645 8.427344996 8.095145801 8.380413331 8.757905856 8.399759174 8.699631395 8.11749835 8.544951342 15625034 sox Sulphur Sulphur oxidation Rhodovulum sulfidophilum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodovulum; 7.42338624 7.392668434 7.880472431 7.966018936 7.682667622 8.194275126 7.693937994 7.59845587 7.686562187 27383060 phn Organic Remediation Herbicides related compound Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.885924548 7.745688323 7.855807 7.570863264 8.006126255 7.939100656 7.65164618 7.938027426 7.456987307 209531311 exaA Organic Remediation Chlorinated solvents Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 7.923263542 8.044294169 7.750540375 7.871762151 8.269438212 8.343433641 8.017323316 8.198187207 52424943 CopA Metal Resistance Copper Mannheimia succiniciproducens MBEL55E 8.207491105 8.438097669 7.366747495 7.576408361 7.669782051 7.804083947 6.752881312 7.417106309 7.779050588 193934074 CopA Metal Resistance Copper Neisseria gonorrhoeae NCCP11945 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria gonorrhoeae; 8.15385129 8.09816503 7.413073139 7.556667682 7.83269965 7.77174565 8.229772865 7.141035418 7.299887955 7.567534838 86573698 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.567889226 8.109926404 8.223925605 7.870761645 8.207859438 7.678871001 7.900965306 7.895648888 68567877 thioredoxin Bioleaching Sulphur Sulfolobus acidocaldarius DSM 639 7.396109241 7.283917328 6.973523364 7.275046796 7.021683798 7.594946032 51465172 pmoA Carbon cycling Methane Methane oxidation uncultured methanotrophic bacterium superkingdom:Bacteria; 8.625237653 8.352920809 7.662100224 7.968571047 8.275796221 8.551697942 8.015382624 8.288476671 7.861274338 8.178415198 7.834227738 83311377 ChrA Metal Resistance Chromium Magnetospirillum magneticum AMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 8.104679954 8.554440956 8.110348289 8.134558105 8.465683623 8.384022556 7.817635227 7.743882658 7.864098408 7.689145886 219850524 gyrB other category gyrB Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 8.076147302 8.04915676 7.619113391 7.462934115 7.419359106 7.225870873 7.185052347 7.942763118 7.385286364 7.185480908 7.476560384 161611252 catB Organic Remediation Aromatics BTEX and related aromatics Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.429763194 7.55247992 7.450521657 7.389222663 84043013 Catechol Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 8.563883089 8.532020942 8.36549992 8.130208995 8.81121415 8.682642897 8.777111346 8.660184674 156868870 ara Carbon cycling Carbon degradation Hemicellulose Clostridium leptum DSM 753 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 7.795884754 7.779269731 7.711650074 7.775518122 7.962995002 7.934992337 7.954713204 7.982888673 7.746630852 91781011 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 9.030342296 9.233836094 9.136668773 8.950848934 9.616859481 8.769162216 9.086338069 9.139891259 9.431601895 84392475 pcpE Organic Remediation Herbicides related compound Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 8.184204368 8.178205573 7.907337986 7.685497562 7.999354143 8.118806599 8.039678558 7.917485563 7.876173472 145702666 PGK Bioleaching Carbon fixation Metallosphaera sedula DSM 5348 8.61491096 8.888158921 8.017425821 7.990653945 7.898464444 7.778675578 7.424274785 7.998115635 7.737817809 7.57128767 7.906358587 116065830 fnr Stress Oxygen stress Synechococcus sp. BL107 7.863281094 8.187453275 7.574669522 7.487807308 7.503133064 7.431396098 7.356015673 7.535087716 7.457229174 7.386675748 7.653126912 223951425 amyA Carbon cycling Carbon degradation Starch Pectobacterium carotovorum subsp. carotovorum superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 8.394537242 8.190694505 8.122194864 8.209356589 8.092593888 8.213910411 8.241651888 8.173981361 8.220305316 8.071990651 7.831927019 134099599 pcpB Organic Remediation Herbicides related compound Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 7.877805604 8.166962821 7.579134351 7.640008277 7.468840439 7.27003675 7.561496094 7.894516713 7.874139578 7.678963548 7.652819119 149130714 sigma_24 Stress Sigma factors Bacteroides caccae ATCC 43185 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides caccae; 7.282762519 7.324910722 7.704169934 8.048599835 7.331702523 7.964664385 7.403746767 7.575011263 7.52164701 229541511 pstC Stress Phosphate limitation Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 7.339507962 7.299971121 7.230598263 7.200857405 6.755477722 7.912102549 7.23899779 7.265436167 7.404106047 187717114 MFS_antibiotic Antibiotic resistance transporter Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.955903259 8.177283721 7.305420352 7.20220684 7.410829203 7.2790543 6.968601222 7.919069402 7.32627941 7.270457661 7.327299211 177842341 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 7.700443819 7.491925808 7.638859825 7.901679058 7.327501231 8.22731535 7.714737295 7.605098127 7.507611574 118424460 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.991551156 7.427459753 7.689019827 7.934560433 7.519880347 7.736141161 169762163 sdsA Organic Remediation Others Pseudomonas putida W619 7.816633762 7.825815834 7.524444707 7.513745537 221208445 Catechol Organic Remediation Aromatics Other aromatics Burkholderia multivorans CGD2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 8.043526753 8.192020027 8.156559694 8.194518527 7.817451782 8.104107722 8.176477202 8.214348068 8.363799018 8.279817201 8.206515236 33520805 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.428450344 8.337549122 8.911706947 8.777175248 8.504042541 8.176011424 8.522596819 8.247796357 8.346434339 8.427094577 8.651326169 46914988 glnA Stress Nitrogen limitation Photobacterium profundum SS9 6.97668982 7.244438023 83840222 ArsC Metal Resistance Arsenic Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 8.587088002 8.522954038 7.880731933 7.594474857 8.105844976 8.102312536 7.595330083 8.372478641 7.834484851 7.759716527 8.122873773 146192287 Catechol Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. ORS278 8.037038996 8.696176245 7.578973687 7.158193347 7.522862412 7.305532998 7.712155904 14090309 dsrB Sulphur sulfite reductase Desulfovibrio cuneatus superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 7.140091276 7.074850913 242350342 hly virulence hemolysin Staphylococcus epidermidis M23864:W1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus epidermidis; 7.729144547 7.641391207 8.146830919 8.062363783 7.533967864 7.212758944 7.88113273 84787113 hrcA Stress Heat shock Erythrobacter litoralis HTCC2594 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 7.567382986 7.64428986 7.789210654 7.79066899 7.742577621 7.962148204 7.821370531 7.507660213 7.872614239 15964325 cap virulence capsule Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 8.303642633 8.337410892 7.431281549 7.360129612 7.3328897 8.085653351 7.607923219 7.818784857 7.740786799 151352 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.059365214 7.421750645 7.276415036 7.046460518 6.79947928 7.550318561 7.293575494 7.351056503 222451202 BchY other category chlorophyllide reductase Chloroflexus sp. Y-400-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus; 7.536947194 7.569687761 7.919917951 8.018848108 7.575749169 8.165217018 7.393529773 7.297667913 7.289336389 116224182 glnA Stress Nitrogen limitation Solibacter usitatus Ellin6076 7.519772212 7.480150423 7.568664611 6.84203102 7.52356974 7.379974681 223984910 dsrA Sulphur sulfite reductase Holdemania filiformis DSM 12042 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichi;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Holdemania;species:Holdemania filiformis; 7.67988754 7.646444517 7.638663878 7.887529389 7.854747782 7.650170014 7.770766369 7.660964662 90324660 hly virulence hemolysin Photobacterium profundum 3TCK superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 6.947922726 7.298281071 7.334977614 6.960081185 7.524947623 7.12893242 6.996273105 7.424473185 73537805 ZntA Metal Resistance Zinc Ralstonia eutropha JMP134 7.921171579 7.357308331 7.697059641 7.524269765 8.021526525 184201855 SMR_antibiotics Antibiotic resistance transporter Kocuria rhizophila DC2201 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 8.179871744 8.326599674 7.732532242 7.865165646 7.918740283 8.268142568 8.42041755 8.584732833 8.065247205 7.763042992 189191346 iro virulence Pyrenophora tritici-repentis Pt-1C-BFP 8.044296827 8.557710088 7.290785852 7.213326668 7.363200741 7.44850614 7.034651774 7.9451273 7.259619198 7.402295202 7.385770309 167353186 sigma_70 Stress Sigma factors Shewanella halifaxensis HAW-EB4 7.196595185 7.282193264 6.869053384 7.416906077 7.19779858 7.259614842 212671447 pcaG Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 9.180453994 8.999331079 9.064176407 8.763463239 8.784107917 9.081163511 8.827116025 9.106774085 8.778113358 9.012693478 8.581711758 116695425 ChrA Metal Resistance Chromium Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 7.230690803 7.578482115 7.87712203 117993965 cellobiase Carbon cycling Carbon degradation Cellulose Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.638931072 7.059567077 7.13021702 7.88419131 170141860 pmdAB Organic Remediation Aromatics Others Burkholderia graminis C4D1M 8.268977443 8.42996666 7.775611987 7.760277024 7.57340994 7.740276699 8.071879417 7.89585492 7.76338817 7.986444606 68535672 hrcA Stress Heat shock Corynebacterium jeikeium K411 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 8.165552127 8.463876262 7.989164336 7.670928226 8.472040162 8.136334061 8.112927968 58337637 cellobiase Carbon cycling Carbon degradation Cellulose Lactobacillus acidophilus NCFM superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus acidophilus; 8.528231322 8.986938041 8.119851692 7.697561189 8.118600983 7.81318519 7.653615137 7.866024533 7.695122907 8.130694396 85709563 B_lactamase_A Antibiotic resistance Beta-lactamases Erythrobacter sp. NAP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 7.80344416 7.718633721 7.559712287 7.823667128 7.879731641 7.909156167 7.92745262 7.968538173 7.981969827 76882427 mer Metal Resistance Mercury Nitrosococcus oceani ATCC 19707 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 7.048045381 7.410099036 62468096 bco Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus tolulyticus superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 7.897605766 7.938144598 7.983492804 7.688476324 8.327750656 7.934329747 7.635163571 7.940335972 7.717551935 28204269 atzA Organic Remediation Herbicides related compound Clostridium tetani E88 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium tetani; 7.722244446 7.440232028 7.41507581 7.232879458 7.323261824 7.709007388 16766982 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Salmonella typhimurium LT2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 7.909297888 7.634127547 7.383781457 7.139016437 7.364656556 8.124724843 7.548285652 7.649349257 7.68974819 1314081 AceA Carbon cycling Carbon degradation others Saccharomyces cerevisiae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Saccharomyces; 8.295647144 8.280820508 7.709780668 7.783726941 7.751356233 7.672703269 7.233454336 7.566059655 7.496535861 7.907531801 119459179 pimF Organic Remediation Aromatics Aromatic carboxylic acid marine gamma proteobacterium HTCC2080 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.018777318 8.297976153 7.296667573 7.650727537 7.486863846 7.458166842 7.403404377 7.645107355 7.526897085 7.605927342 227523775 fnr Stress Oxygen stress Lactobacillus hilgardii ATCC 8290 6.888539538 6.825603639 8.008668535 6.898766053 7.11588997 222440772 nhh Organic Remediation Aromatics Nitoaromatics Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 7.991961338 8.325920706 7.984299713 7.864719885 7.739952671 7.750744623 7.833632851 8.519206822 8.036774114 7.751146035 8.027454413 206679618 sox Sulphur Sulphur oxidation Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.079218021 7.025341515 7.221118826 208008989 atzA Organic Remediation Herbicides related compound Aliivibrio salmonicida LFI1238 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Aliivibrio salmonicida; 7.405180315 7.397439964 7.410378175 7.207560397 7.141509782 7.320171499 58270684 AceA Carbon cycling Carbon degradation others Cryptococcus neoformans var. neoformans JEC21 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Tremellomycetes;order:Tremellales;family:Tremellaceae;genus:Filobasidiella;species:Filobasidiella neoformans; 8.405539346 8.607145627 8.294514813 8.515838619 8.978976209 8.70621346 8.788412061 8.765349954 187930012 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.229506123 8.108720561 8.546321447 8.392236056 8.273071253 8.73789825 8.456075714 8.728300129 8.734837874 8.630606371 196202915 pstC Stress Phosphate limitation Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.564467233 7.60852074 7.741337647 7.687072985 7.354396227 8.220063407 7.662134506 7.635757826 7.651444223 12667608 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium UMTRAdsr626-21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 7.598429416 7.86403959 8.191311156 8.379657173 8.087432473 8.2097091 7.660053451 8.120202784 8.065680708 166859718 mauAB Organic Remediation Herbicides related compound Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.153567304 7.413609483 50839105 gyrB other category gyrB Propionibacterium acnes KPA171202 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 7.69808363 7.608586401 7.638796487 7.254758425 7.406442061 7.845233345 7.367224024 7.695735344 7.782367536 68250348 pheA Organic Remediation Aromatics Other aromatics Pseudomonas sp. M1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.315699478 8.1363903 8.045196774 8.006292344 8.302905486 8.207484288 8.246093757 8.45107304 8.308649337 119468867 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Alteromonadales bacterium TW-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales; 8.119813586 8.300387016 7.853192621 8.719702224 8.87187061 8.715133111 7.858998188 8.740632479 8.70635153 8.705996262 87281036 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.066406618 8.140107621 7.832586582 7.603619903 7.657860035 7.596260077 7.828537535 7.75222811 7.726497209 7.746875525 111026297 alkK Organic Remediation Others Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7.940297229 7.808550906 7.92055186 7.759105786 7.851092533 7.715784056 7.644130917 7.158565332 116700066 pimF Organic Remediation Aromatics Aromatic carboxylic acid Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 8.22208422 8.267279277 8.195581931 7.890612995 8.280305554 8.230339788 8.267611587 8.367347863 7.89380141 206890459 grpE Stress Heat shock Thermodesulfovibrio yellowstonii DSM 11347 superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Thermodesulfovibrio;species:Thermodesulfovibrio yellowstonii; 7.215129174 6.899384916 146283178 cytochrome Energy process Energy process Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 7.914627915 7.983571094 7.180594532 7.307428185 7.802340856 7.391334049 7.223231196 8.168347259 7.559369264 7.358584597 7.824064562 227069607 nirA Nitrogen Assimilatory N reduction uncultured archaeon 7.89193584 7.963438126 7.585904788 7.926705803 7.842251552 7.685394046 7.818175774 8.016042217 7.370461582 218133266 groEL Stress Heat shock Bacteroides pectinophilus ATCC 43243 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides pectinophilus; 7.088848873 7.133486555 6.802217657 7.329095367 7.12126283 7.102829644 77378693 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.564344861 8.446809447 8.554285066 8.428288738 8.310414458 8.458742631 8.441932406 8.409916909 8.445889973 8.37337347 8.331935301 166408402 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 8.539818127 8.341451114 7.755623758 7.797739144 8.435807928 8.664909076 8.15215635 8.548395066 8.057760523 8.081823576 8.277955819 85361889 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 7.868618262 7.906218284 8.199282437 8.221818944 7.730882166 8.133200837 8.194933333 8.08343873 7.887739306 62084128 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.25688589 8.297570395 8.03578668 7.533994233 8.214555352 7.92583035 8.100229763 8.113107985 8.442014498 209401588 narG Nitrogen Denitrification uncultured bacterium 8.155078849 8.201416264 8.132154058 8.231731598 8.131647434 8.428451504 8.54600671 8.327399859 8.380737852 53756342 nifH Nitrogen Nitrogen fixation Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 7.750678841 7.795688837 7.782937841 7.707837846 7.709144923 7.681168532 7.960293131 91977212 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.285049824 7.468020014 7.636267231 7.085303105 7.872337808 7.050745413 7.150514162 7.637462753 145257313 cellobiase Carbon cycling Carbon degradation Cellulose Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.732543956 7.869379355 7.306309551 7.482913213 17544988 pcc Carbon cycling Carbon fixation Ralstonia solanacearum GMI1000 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 8.325216216 8.444452297 8.651753072 8.539441082 8.43196527 8.342605672 9.039259836 8.546807061 8.765989226 8.425059194 8.61164063 58337767 Al Metal Resistance Aluminum Lactobacillus acidophilus NCFM superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus acidophilus; 7.333243962 7.234933833 7.004306904 167348367 bphA Organic Remediation Aromatics Polycyclic aromatics Caulobacter sp. K31 7.807756978 8.029923457 7.718809411 7.744924404 7.916556564 7.793368531 167354766 pstB Stress Phosphate limitation Shewanella halifaxensis HAW-EB4 7.331067388 7.376937158 7.146733167 7.193460651 7.526635121 7.251395006 7.620897729 86573243 CODH Carbon cycling Carbon fixation Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.19871743 7.777741758 8.145071293 7.698699583 7.864880185 8.23191707 7.823024903 7.767677544 7.86367447 92112378 glnA Stress Nitrogen limitation Chromohalobacter salexigens DSM 3043 7.981830214 7.9420827 8.000593733 7.572806344 8.219746107 8.044666286 8.252423525 8.393109042 8.395699186 13236822 dsrA Sulphur sulfite reductase Desulfotomaculum putei superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 7.651454295 7.584370157 7.073334228 7.136426067 7.477840547 7.656600181 7.352249841 7.009606248 7.565429166 133911424 endochitinase Carbon cycling Carbon degradation Chitin Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 8.277377124 8.207161143 7.601497862 7.840146147 7.448863105 7.283684727 7.779750103 7.765045743 7.787390613 7.602002044 7.789760943 170727916 dnaK Stress Heat shock Shewanella woodyi ATCC 51908 7.045819731 7.120766733 7.291242685 6.686383981 6.496388736 7.210999906 6.949888756 6.974186441 7.201941635 72121142 CopA Metal Resistance Copper Ralstonia eutropha JMP134 7.451724637 7.606989269 7.805793162 8.316341711 7.796270728 8.210356048 7.72514527 7.287110078 8.071576906 148243938 NAD_dependent_epimerase_dehydratase_family_protein_EPS Bioleaching EPS Acidiphilium cryptum JF-5 8.173394078 8.09271908 8.114785152 8.154943556 7.942998758 8.091325326 8.586652354 8.339718395 8.475548479 8.398993124 8.334540256 209871850 oxyR Stress Oxygen stress Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 8.184773231 8.382255704 7.971634757 8.106135977 8.13406462 7.974706655 8.420905537 8.348381716 8.365334048 8.435074151 8.239744389 84617354 mhpA Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces achromogenes subsp. rubradiris superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces achromogenes; 8.626690816 8.358131841 8.247850419 8.674748316 8.62267333 8.338235415 8.580299698 8.305836971 7.987047908 19909559 gyrB other category gyrB Agrobacterium ferrugineum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudorhodobacter; 8.015691716 8.183741047 8.26439486 8.226339159 8.073499072 8.165630441 8.308459903 8.307195437 8.283864172 8.18077934 8.130311217 197341619 exochitinase Carbon cycling Carbon degradation Chitin Streptomyces sp. SPB74 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.313962016 8.208779513 8.133440949 8.018003465 8.47470493 8.529079879 8.25047207 8.522852515 8.208016339 8.423718699 8.398190853 46400024 type_III_secretion virulence secretion Candidatus Protochlamydia amoebophila UWE25 superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Parachlamydiaceae;genus:Candidatus Protochlamydia;species:Candidatus Protochlamydia amoebophila; 8.319114966 8.190317058 7.32352993 7.825710652 8.031264064 8.363492705 7.600069074 8.269426156 7.869017887 7.92493658 7.989769395 124260396 sox Sulphur Sulphur oxidation Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 8.289744019 8.410717842 7.781513765 7.616920173 7.65367936 8.159419618 8.064438158 8.044529047 7.894891484 219995919 sigma_70 Stress Sigma factors Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 7.808355919 7.448227024 7.727139096 7.980234357 7.355345516 7.083027488 6.962004118 85672717 ppx Phosphorus Phosphorus utilization Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.178094549 7.36508492 7.118827573 6.945694491 7.796906093 7.285409363 7.05887871 7.202586007 116804518 nasA Nitrogen Assimilatory N reduction uncultured prokaryote 7.577741095 7.631530905 7.762369607 7.937796013 7.668063952 7.954477319 7.704660235 7.746736924 7.936010928 172037323 ahpC Stress Oxygen stress Cyanothece sp. ATCC 51142 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.402508734 7.592569345 7.564939641 7.101918141 7.573120389 7.387589565 7.49116133 118167430 CDH Carbon cycling Carbon degradation Cellulose Mycobacterium avium 104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 8.017697923 8.136709999 7.754468611 7.732367178 7.76668846 7.782196065 8.196685128 8.105798829 7.919407503 7.889146492 8.029334238 118053504 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.350134291 8.495278287 8.050205865 8.127677761 7.852769872 7.554996772 7.296657983 8.057452454 7.530356139 7.86298116 126434099 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.66976429 7.561750197 7.514797962 7.667415131 7.93988511 7.999707293 7.808401495 7.63061911 7.806563817 156524947 oxyR Stress Oxygen stress Vibrio harveyi ATCC BAA-1116 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 8.479960099 8.652477664 8.409097186 7.99979907 7.666017974 7.47254676 7.737266298 7.224688113 8.10184103 8.130440307 8.572441955 187603576 AceA Carbon cycling Carbon degradation others Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 7.852306715 8.246671094 7.288050245 7.227333833 7.30900674 7.706701226 7.282509675 7.733904257 7.230630415 7.202412635 7.169237222 152025608 obgE Stress Radiation stress Bacillus cytotoxicus NVH 391-98 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cytotoxicus; 7.375831058 7.556079841 7.522365882 7.530488885 7.993551376 7.527436877 7.778887055 7.44022563 167646269 CopA Metal Resistance Copper Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.28288093 8.218177642 8.050528315 8.436698858 8.294416783 8.420295154 8.156263414 8.217698466 84685183 ureC Nitrogen Ammonification Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.160961074 7.49913183 7.525180774 7.947057171 8.220011133 8.39911649 8.198770731 8.23017414 8.077192272 157917522 narI Stress Oxygen limitation Salinispora arenicola CNS-205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 7.561002773 7.163852581 7.459907844 7.280940156 7.102847921 7.047901474 7.343021415 7.449423188 253986644 phoB Stress Phosphate limitation Methylovorus sp. SIP3-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylovorus; 8.064130578 8.049754013 7.902007296 7.679047795 8.016074022 7.915595427 7.852745929 7.610606265 7.936417846 89100583 TerD Metal Resistance Tellurium Bacillus sp. NRRL B-14911 8.197076447 8.300089852 8.277339201 8.324519527 7.978132588 8.310766685 8.299777792 8.313773055 8.338699218 7.830090805 7.703227261 149941660 dsrA Sulphur sulfite reductase Archaeoglobus veneficus superkingdom:Archaea;phylum:Euryarchaeota;class:Archaeoglobi;order:Archaeoglobales;family:Archaeoglobaceae;genus:Archaeoglobus; 6.927299593 6.911666501 134100482 pcpB Organic Remediation Herbicides related compound Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 7.496249234 7.607176886 7.539956794 7.670136422 7.419401455 7.833244853 7.627982452 7.592414633 7.62554925 166857752 nmoA Organic Remediation Aromatics Nitoaromatics Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.418068082 8.373103851 8.473528462 8.228685377 8.4939793 7.964120152 7.915793793 7.794257475 161325276 amyA Carbon cycling Carbon degradation Starch Kordia algicida OT-1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Kordia;species:Kordia algicida; 7.236799086 6.79497294 7.045067138 224603106 AceA Carbon cycling Carbon degradation others Lutiella nitroferrum 2002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Lutiella;species:Lutiella nitroferrum; 8.338613274 7.866438803 7.562986457 7.855516588 7.818232693 7.931935195 8.0755065 7.996415153 7.551549984 162568557 aoxB Metal Resistance Arsenic uncultured bacterium superkingdom:Bacteria; 7.387530804 7.544344911 7.768651179 7.793443868 7.463633434 8.262701238 7.458308419 7.504586762 7.769926412 21217705 rubisco Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.085139534 8.425084558 8.134218265 7.91128248 8.554877915 8.404084004 8.352987437 8.181691688 8.427597918 33592211 pstS Stress Phosphate limitation Bordetella pertussis Tohama I superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella pertussis; 7.752856877 8.001189447 7.573999141 7.526942015 8.071282434 7.424661704 7.010158793 7.612655589 151302290 APS_AprA Sulphur adenylylsulfate reductase Desulfobulbus propionicus DSM 2032 8.020292631 8.272559687 8.270869513 8.03156817 8.493064594 7.981225552 8.187475848 8.333769198 8.385927819 145296246 hrcA Stress Heat shock Corynebacterium glutamicum R superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 8.53153367 8.645434697 7.817893496 7.900477591 8.025130833 8.111310581 7.749009532 8.733513309 7.799307781 7.583102585 7.726004921 118472045 pnbA Organic Remediation Aromatics Nitoaromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 7.916722562 7.528858324 7.820915994 7.598584542 7.833198041 8.058524099 7.604659581 7.56222121 7.413780118 68164720 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.819565284 8.191243211 7.414629526 7.532099987 7.254196066 6.947437535 7.47997799 7.956115548 7.578875367 7.460305635 109452431 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.798883751 7.796089482 7.788891313 7.13183168 7.616125452 7.822079896 7.765443136 158138808 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.469999148 7.164207923 7.140598913 7.43344542 7.407389631 7.682184579 7.287204332 5702378 TerZ Metal Resistance Tellurium Proteus mirabilis 7.092253376 6.812267837 7.14883356 6.720153472 7.281256865 85827473 nhh Organic Remediation Aromatics Nitoaromatics Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.301173605 7.275613417 7.123397247 7.226809971 7.02662474 7.476445416 7.49691961 6.871597145 7.119778793 119457821 TerD Metal Resistance Tellurium Lyngbya sp. PCC 8106 7.883978663 7.986655727 8.207449121 7.977945068 8.097893048 7.580579098 7.745818113 8.042271171 27355241 Arylest Organic Remediation Aromatics Other aromatics Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.358784625 8.340024112 8.38665082 8.418063431 8.253909402 8.156605179 8.587111378 8.030705108 8.713152172 8.571790805 8.305284905 16330063 sigma_24 Stress Sigma factors Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 7.866281552 7.763427157 7.546250628 8.054231373 8.170823101 7.699472687 7.912675418 209520879 ppx Phosphorus Phosphorus utilization Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.282499442 8.545764185 7.887707085 8.224418925 8.219199824 8.485397126 7.4421403 8.418074855 8.131120718 8.335977581 8.587999042 261371214 obgE Stress Radiation stress Fibrobacter succinogenes subsp. succinogenes S85 superkingdom:Bacteria;phylum:Fibrobacteres;class:Fibrobacteres;order:Fibrobacterales;family:Fibrobacteraceae;genus:Fibrobacter;species:Fibrobacter succinogenes; 7.303352676 7.35347132 7.536689547 7.796656715 7.493219872 7.856548019 7.305220837 7.594829912 7.156135049 211958434 hrcA Stress Heat shock Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 8.159889487 7.531821128 88788043 fnr Stress Oxygen stress Synechococcus sp. WH 7805 8.10229897 8.37238838 8.286326377 8.052653055 7.886205466 8.100445629 8.574903672 8.414405973 8.462087009 8.580534693 8.733343946 209966545 alkK Organic Remediation Others Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 8.500766923 8.325900718 7.633197792 7.47960998 7.94714977 8.34778183 8.07170561 8.530829813 7.72979587 7.970698636 7.74391606 262309234 SMR_antibiotics Antibiotic resistance transporter Acinetobacter lwoffii SH145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter lwoffii; 8.114956076 8.366142715 7.795798004 8.02587758 7.607822826 6.85142212 7.260125042 7.451276508 7.59867121 7.82266529 8.035396682 91788318 katE Stress Oxygen stress Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 8.023725551 8.383369146 8.219610656 7.818758538 8.015887676 7.825282925 8.033226085 8.281114242 7.9501906 7.594292442 7.939475443 171914251 TerD Metal Resistance Tellurium Verrucomicrobium spinosum DSM 4136 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Verrucomicrobium;species:Verrucomicrobium spinosum; 8.413198186 8.46254585 7.819264911 7.958258066 7.882660161 7.985258328 7.877251516 7.892091313 8.382084565 8.02855507 7.960683964 251795547 pstB Stress Phosphate limitation Paenibacillus sp. JDR-2 8.239799645 8.267651947 8.264235053 7.965906248 7.905844786 7.807411602 8.056978357 8.346168596 7.666205735 8.452823204 149910043 sigma_70 Stress Sigma factors Moritella sp. PE36 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Moritellaceae;genus:Moritella; 7.23694704 7.523336871 8.040829015 7.980333237 7.70348818 8.015062838 7.829710025 7.609740895 7.617787604 119818800 pcc Carbon cycling Carbon fixation Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 7.998806475 8.031060563 7.908660259 7.740445591 8.082846462 8.03136067 8.089074916 8.012034164 8.032613635 190571993 ArsC Metal Resistance Arsenic Comamonas sp. CNB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 8.061783364 7.98230607 7.686208106 7.72936455 8.220486684 7.981445103 8.161284971 8.094631608 8.106939338 257457314 sigma_70 Stress Sigma factors Treponema vincentii ATCC 35580 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema vincentii; 7.941372308 8.090269429 7.960496139 7.861014837 7.517251082 7.759787579 7.478378771 7.85537855 7.724613783 7.542582551 7.561022258 156720380 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 8.111860012 8.456813911 7.666593249 7.69267494 7.607477438 6.888705255 7.124354672 7.467906573 7.611903467 7.342808996 7.818004236 256579821 hrcA Stress Heat shock Desulfomicrobium baculatum DSM 4028 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfomicrobiaceae;genus:Desulfomicrobium;species:Desulfomicrobium baculatum; 8.334651657 8.441004109 7.964871961 8.087013943 8.299899425 7.469657405 7.607670821 8.043056018 8.027103885 7.986757856 7.855393302 154491506 sigma_24 Stress Sigma factors Parabacteroides merdae ATCC 43184 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides merdae; 6.872479164 7.13582472 6.89427766 7.363024996 6.901719148 7.202578359 7.61893079 160896134 SMR_antibiotics Antibiotic resistance transporter Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.118015144 7.239199025 7.321249268 7.542535371 7.890017484 208431980 sigma_70 Stress Sigma factors Helicobacter pylori G27 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter pylori; 7.229789545 7.585744896 7.257114571 7.455442517 117650891 endochitinase Carbon cycling Carbon degradation Chitin Chaetomium cupreum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium; 8.988943558 8.954435658 9.078026194 9.027338019 8.695884053 8.870904032 9.177661471 8.448083045 8.951914755 8.783199878 8.791693188 84391653 ahpC Stress Oxygen stress Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 7.1233375 7.288236584 7.098712115 6.995040089 134292579 ChrA Metal Resistance Chromium Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 7.829533003 8.025200007 7.27359286 7.421853401 7.615886319 7.641964931 7.357473028 7.689695803 7.317713038 7.572324347 7.324192501 221271412 T4_type_portal_protein Bacteria phage REPLICATION Serratia phage KSP90 order:Caudovirales;family:Myoviridae; 7.154541784 7.219013287 7.13690012 6.735880217 6.771240004 7.421802535 7.108556003 7.266664765 7.067144514 146407249 sox Sulphur Sulphur oxidation Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.519765775 7.960315919 7.832804929 7.832902391 8.130393873 8.229781571 7.881523541 7.71121463 7.868251213 13249571 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.732993596 7.968647452 8.028180645 8.193351789 7.831732364 7.951504148 7.982314712 8.056145803 7.816165453 262197834 sigma_32 Stress Sigma factors Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Haliangiaceae;genus:Haliangium;species:Haliangium ochraceum; 8.023720761 8.24962604 7.77615761 8.095834639 7.949638519 8.001889997 7.630102304 7.836663548 7.265396833 148258486 CadA Metal Resistance Cadmium Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.68185149 7.620142756 7.849647627 7.695495261 8.107314088 7.723992426 7.723450462 7.571253777 119398522 endoglucanase Carbon cycling Carbon degradation Cellulose Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7.968063763 8.327527505 7.780261186 7.735286406 7.482767047 7.557018096 7.62674849 8.007504091 7.667872631 7.869930748 7.671055538 117577631 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Gramella forsetii KT0803 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Gramella;species:Gramella forsetii; 7.812768876 8.429363366 7.477600084 7.416631277 7.559261327 7.399032841 7.01773802 8.099671135 7.276846514 7.248091227 7.421914709 189196400 chnB Organic Remediation Other Hydrocarbons Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7.85185997 7.965216246 121529335 dehH Organic Remediation Chlorinated solvents Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.352980952 8.183671965 7.275111249 7.65947562 7.67851474 7.564753799 7.329879209 7.291020614 7.407600941 7.509915785 60476296 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.377930129 7.28663485 7.962490751 8.216577944 7.687022262 7.640497206 7.601173688 7.800569844 148537349 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. ASS14 8.070854683 7.790653681 7.920670181 7.843545685 7.843374345 7.992022368 8.283698659 8.27817374 8.331143407 163751530 nrfA Nitrogen Dissimilatory N reduction Shewanella benthica KT99 8.209790771 8.462310581 7.789086869 7.457627436 7.69100959 7.36885544 7.438307923 7.910500564 7.558170045 7.093688331 7.675058965 50841347 ara Carbon cycling Carbon degradation Hemicellulose Propionibacterium acnes KPA171202 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 8.346614642 8.133433976 7.985476209 8.120417609 7.552805998 7.696773226 7.95516221 8.042892453 8.00354191 7.863706966 118697275 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Burkholderia ambifaria MC40-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 8.061963968 8.198893656 7.984434541 8.207803473 7.808274419 7.924499713 8.127529476 7.947308855 8.341270995 8.108185873 7.783246853 57160024 endochitinase Carbon cycling Carbon degradation Chitin Thermococcus kodakarensis KOD1 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus kodakarensis; 7.876421597 8.076136842 7.3420935 7.778883587 7.818607058 7.606401711 7.435789213 7.912266862 7.331565197 7.18022467 7.635839282 242373069 vip virulence virulence protein Staphylococcus epidermidis M23864:W1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus epidermidis; 7.021485408 6.865771861 7.138926364 6.717742933 7.375210543 7.032434301 6.856744157 6.987718786 225083263 AceB Carbon cycling Carbon degradation others marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.58825206 7.342975224 7.383233145 7.094770025 7.658249018 7.516737034 7.439942822 7.281833743 219718608 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Stenotrophomonas sp. SKA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 8.231585 8.332878241 7.428494544 8.164713699 8.742075196 8.935889819 8.549656171 68243989 aclB Carbon cycling Carbon fixation Pelodictyon phaeoclathratiforme BU-1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 7.944396055 8.108521992 7.65624871 7.726282391 7.319731217 7.384254273 7.655416001 7.765525963 7.753773377 7.53179137 7.348314649 118433643 grpE Stress Heat shock Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 7.663685667 7.580431404 7.399610796 7.181082606 7.528478517 7.79427404 7.385973459 7.496603786 7.601290591 83594258 silC Metal Resistance Silver Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 7.576727346 7.667762113 7.988108257 7.929255009 8.153589562 8.046290252 7.957928154 7.626001961 7.836365468 53757033 ArsC Metal Resistance Arsenic Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 8.573826133 8.432187505 7.8239666 7.800644777 7.868668125 7.622557009 7.957139987 8.139243555 8.138486621 238794758 iuc virulence aerobactin Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 8.284138538 8.777894033 7.411837372 7.645914173 7.522848409 7.259210181 6.992389601 7.565296495 7.432616368 7.564335426 7.575584039 197085829 hydrogenase Energy process Energy process Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 7.785549351 7.956060111 7.890870405 7.810603722 8.029451526 7.741780367 8.22583734 7.804632108 7.801915581 77969955 chnB Organic Remediation Other Hydrocarbons Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.85752168 8.984697302 8.86409516 8.710055838 8.552259063 8.397834178 8.463497207 8.398004011 8.784220191 8.732378897 8.484714182 268317675 hrcA Stress Heat shock Rhodothermus marinus DSM 4252 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 7.376639513 8.08333474 7.959934022 8.034920567 7.551094386 7.643378884 7.478402475 7.881858437 10581879 pstB Stress Phosphate limitation Halobacterium sp. NRC-1 8.251760818 8.068349023 7.802354135 7.102662034 7.241834028 7.549066256 7.653078428 242278152 proV Stress Osmotic stress Desulfovibrio salexigens DSM 2638 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio salexigens; 8.359528456 8.378841648 8.355714705 8.776698356 8.566111061 8.132451194 8.583224842 8.146828296 8.503956699 8.590595391 8.362415182 124260166 ChrA Metal Resistance Chromium Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 8.069116356 7.965366193 7.673366513 7.72573641 7.544722513 8.008011606 7.57740663 7.500289531 7.72286821 83842695 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 8.37758005 8.484495332 8.272690487 8.309618159 8.244002094 8.1355386 7.751131673 7.977579272 62147905 obgE Stress Radiation stress Chlamydophila abortus S26/3 superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Chlamydiaceae;genus:Chlamydophila;species:Chlamydophila abortus; 7.739278379 7.668724195 7.377322479 7.408365742 8.02266011 7.200288944 7.484533813 144905782 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.107869561 8.185259749 7.749533027 7.741142669 7.828173037 7.393625463 7.908493766 7.776539816 7.72623902 7.743977954 7.707870345 146194889 pheA Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.631555174 7.705320828 7.842317944 7.248446467 7.988935735 7.426138473 7.590280302 7.640264278 91794382 glnA Stress Nitrogen limitation Shewanella denitrificans OS217 7.651011646 7.744908174 7.709866069 7.635416971 7.479713925 7.781915864 7.580329813 7.47932642 7.509946308 161159710 sigma_32 Stress Sigma factors Sorangium cellulosum 'So ce 56' 8.102779715 8.57464537 8.372981595 8.429162457 8.150288615 8.397282505 8.858177265 8.470472071 8.660245862 8.441131384 8.430364015 109452465 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.505430148 7.399946975 7.499383942 6.818310158 7.209238835 7.520970062 7.093491347 7.292357485 7.394147948 253826075 endochitinase Carbon cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 8.208742793 8.013446661 7.147495889 7.574063754 7.936664802 8.044334249 7.452137437 8.094286134 7.641349965 7.3753707 7.701527853 187715061 ahpC Stress Oxygen stress Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.812064951 7.761896928 7.551622334 7.560630218 7.881203351 7.772985248 7.939551188 7.739896167 94471177 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.252808723 8.331021653 7.437762641 7.790459339 7.977590138 8.086223259 7.168319073 7.568407105 7.34434172 7.800404788 111019506 Catechol Organic Remediation Aromatics Other aromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.114622633 8.317152617 7.465619137 7.715866574 7.415165163 7.556904843 7.726341218 8.169911883 7.625061772 7.277670119 7.773931211 218282286 sigma_70 Stress Sigma factors Eubacterium biforme DSM 3989 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichi;order:Erysipelotrichales;family:Erysipelotrichaceae;species:Eubacterium biforme; 7.371240583 7.030077799 260220744 sigma_24 Stress Sigma factors Curvibacter putative symbiont of Hydra magnipapillata superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 6.98156899 7.130782178 6.847190271 6.949152874 7.520602776 7.023170497 7.302804184 50842032 ppx Phosphorus Phosphorus utilization Propionibacterium acnes KPA171202 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 7.821443294 8.317460924 8.069929214 8.007213126 8.415395009 8.184347983 8.735748702 8.51428961 8.176438508 118019166 pcaG Organic Remediation Aromatics Other aromatics Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 8.580215805 8.155196463 8.039948328 7.686083496 8.196414137 8.57392323 7.921292373 8.389777408 8.169687035 8.176320857 8.116024548 157011602 APS_AprA Sulphur adenylylsulfate reductase uncultured bacterium 7.013559548 6.912194949 46307846 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.668169261 7.477063696 7.790532714 7.565909455 7.845248109 7.775572627 7.759076508 7.51897621 7.832924024 227076324 sigma_24 Stress Sigma factors Corynebacterium accolens ATCC 49725 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium accolens; 8.211920198 8.22193236 7.40879577 7.329621539 7.643201436 7.506855903 6.878776196 7.230777054 7.372040142 7.529553759 83943925 FTHFS Carbon cycling Acetogenesis Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 7.530104466 7.432326619 7.598748514 7.79231843 7.255394742 7.483778869 7.248574038 7.33242413 163739538 Catechol Organic Remediation Aromatics Other aromatics Phaeobacter gallaeciensis BS107 8.125024875 8.083313781 8.266640445 8.022595843 8.334955892 8.402463961 8.487012975 8.254946527 8.300409712 179743727 exoglucanase Carbon cycling Carbon degradation Cellulose Penicillium oxalicum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 7.992007082 8.324091154 7.770849259 7.771717252 7.599705836 7.470233888 7.911966712 7.73371964 8.162717675 7.906959981 8.049124183 84390196 pcc Carbon cycling Carbon fixation Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 7.929258461 7.74386552 7.738334128 7.708596406 7.457357257 8.262681331 7.547161011 7.387660865 7.369600034 74038386 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.954753719 8.211426208 7.998954665 7.935463896 7.843844993 8.388330546 8.280644912 8.245174597 7.956192295 8.293108123 18150952 BADH Organic Remediation Aromatics Other aromatics Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.510907089 7.508195442 7.243402755 7.600557481 7.865461609 7.424782482 7.568544749 7.600491443 104784238 ppk Phosphorus Phosphorus utilization Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 7.467691345 7.496848663 8.0138474 8.038232595 7.609700227 8.202231807 7.396713265 7.846629462 7.505676904 226905366 pstB Stress Phosphate limitation Acidaminococcus sp. D21 8.018921905 8.43741888 7.617360513 7.489578252 7.470830686 7.486133604 7.398998803 7.559351589 212703859 dsrA Sulphur sulfite reductase Desulfovibrio piger ATCC 29098 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio piger; 7.675960666 7.800064495 7.569784673 7.533184445 8.020104906 8.020446023 7.660423985 7.813347523 7.993905558 149825407 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Limnobacter sp. MED105 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 7.971696098 8.188255978 7.556121261 7.622878042 7.44914675 7.326342078 7.126107315 7.676066303 7.444201013 7.220219082 7.050584582 242217928 katE Stress Oxygen stress Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 7.853776938 8.156368674 7.295359808 7.404979451 7.522017671 7.762219086 6.628311998 8.173558801 7.125229578 7.049005943 7.247074117 66474859 cmuA Organic Remediation Chlorinated solvents uncultured bacterium superkingdom:Bacteria; 8.289727037 8.174126531 8.138544379 8.361740622 8.485928789 8.898532644 8.640434791 8.681228717 8.31460902 8.258743013 8.721203494 239598364 ppk Phosphorus Phosphorus utilization Staphylococcus warneri L37603 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus warneri; 7.684649562 8.022294892 7.127586561 7.024558085 6.687645295 7.416889186 7.071805978 6.944837158 74056051 cap virulence capsule Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 8.540485063 8.206564801 8.580063653 8.857193539 9.156660116 8.973888603 9.378366652 9.001132771 9.056197374 9.211133709 9.06103569 57016840 cydB Stress Oxygen limitation Campylobacter upsaliensis RM3195 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter upsaliensis; 7.455839168 7.374606153 7.377861429 7.45031486 7.3555839 7.411739307 7.230109696 7.617046797 17385552 narG Nitrogen Denitrification uncultured bacterium 8.087176411 8.33672934 7.365128375 7.412887655 7.340447336 7.617414647 7.459362318 7.348323391 7.378575561 7.473072394 206588626 silC Metal Resistance Silver Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 8.271043371 8.075634362 8.140083467 8.59167144 8.420850455 8.137109651 8.52980441 8.049875229 260424772 sigma_70 Stress Sigma factors Dialister invisus DSM 15470 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Dialister;species:Dialister invisus; 7.205897045 7.35884781 7.364859645 7.02048866 7.016615959 7.174478874 39969767 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 8.426262412 8.25129876 7.499583087 7.656361187 7.842870487 7.429125365 7.823412917 8.065018838 7.884054378 7.962708648 46199296 fnr Stress Oxygen stress Thermus thermophilus HB27 7.937956216 7.690904883 7.974373105 8.371621177 7.848116015 8.544687488 8.133837438 7.950176543 7.828381107 60593160 dsrA Sulphur sulfite reductase uncultured prokaryote 7.474899597 7.434799015 7.752630962 7.807060774 7.753237641 7.558712505 7.590626537 7.853619135 7.678466286 29654528 linB Organic Remediation Pesticides related compound Coxiella burnetii RSA 493 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Coxiellaceae;genus:Coxiella;species:Coxiella burnetii; 7.896304489 7.974528015 7.8902888 7.665650525 7.729196565 7.576051902 7.349558286 7.861957559 7.5217789 7.564837329 7.553327708 198254357 mer Metal Resistance Mercury Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 7.418505044 7.278389273 7.373133537 7.195189529 7.091240507 7.580281737 7.325455845 7.703407028 7.596072716 194277408 catB Organic Remediation Aromatics BTEX and related aromatics Rhodococcus sp. DK17 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7.393419186 7.600206349 7.694266669 7.760719324 7.736400057 8.046118028 8.213881236 7.805539265 8.180252743 84389533 sigma_24 Stress Sigma factors Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 8.10288659 8.33467602 8.117456883 8.372259222 8.494796283 8.27905801 8.559223288 8.38754233 8.204282412 20904963 pstB Stress Phosphate limitation Methanosarcina mazei Go1 7.735248524 7.996442702 6.863344256 6.824028754 84667875 pheA Organic Remediation Aromatics Other aromatics Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 9.013395695 9.095140667 8.752127343 8.454149789 8.428251782 8.792684476 8.52797806 8.752837099 8.563815474 8.668306095 8.404830028 206678223 alkK Organic Remediation Others Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.612435427 8.709897351 7.995273784 7.91946296 7.94584165 7.802841286 7.988185303 8.143239892 7.967602358 8.05126071 7.93386473 149131228 fnr Stress Oxygen stress Bacteroides caccae ATCC 43185 7.498728042 7.369675773 7.035942297 7.116108766 7.755991429 7.295428833 7.482487657 8517644 sox Sulphur Sulphur oxidation Paracoccus denitrificans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 7.57722961 7.692796156 8.03125533 8.500926479 7.676657276 8.431694317 7.810983205 8.081211197 7.870751366 255505749 Tet Antibiotic resistance other Bryantella formatexigens DSM 14469 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;species:Bryantella formatexigens; 7.883357319 7.734933787 7.692779787 7.638304929 7.79879264 8.02962574 7.756856665 7.660978804 7.955039048 237747931 pstB Stress Phosphate limitation Oxalobacter formigenes OXCC13 7.819799904 7.831884844 7.651952096 7.198949174 7.995976625 7.703654407 7.619691794 7.497979825 7.778200793 189466392 ara Carbon cycling Carbon degradation Hemicellulose Bacteroides intestinalis DSM 17393 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides intestinalis; 7.810922186 8.049670362 7.262342936 7.077291858 7.13636349 6.78845012 7.420571659 197282238 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 8.065472956 8.576373001 7.589815185 7.563281791 7.510607113 6.828411271 7.492209127 7.140856175 6.880349295 7.813991029 126198277 ChrA Metal Resistance Chromium Pseudomonas aeruginosa 2192 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.475609672 8.611237124 7.994957168 8.288919003 8.496812112 8.100935966 8.273339818 8.195379813 8.112515899 8.487569661 7.969717019 24986929 CadA Metal Resistance Cadmium Pseudomonas putida KT2440 7.918963239 8.145864383 7.89461769 7.751180011 7.587464152 7.968976362 7.825764284 8.256623963 7.765959074 7.797130206 7.877864702 186476550 TehB Metal Resistance Tellurium Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.377590112 8.406368051 8.432246643 8.379965326 7.951861375 8.231058574 8.700429536 8.586723235 8.405310777 8.568786497 169335559 pstS Stress Phosphate limitation Anaerofustis stercorihominis DSM 17244 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Anaerofustis;species:Anaerofustis stercorihominis; 7.329547538 7.041599648 7.222189909 114320539 ZntA Metal Resistance Zinc Alkalilimnicola ehrlichei MLHE-1 7.442913189 7.817462843 8.098955181 8.477289232 7.866870275 8.195586071 7.546488228 7.859929314 7.376536977 41397188 pcaG Organic Remediation Aromatics Other aromatics Mycobacterium avium subsp. paratuberculosis K-10 8.23796018 8.288932778 8.168219162 8.030390415 8.056607636 7.730926361 7.789926254 7.84638533 258526020 pstB Stress Phosphate limitation Desulfurivibrio alkaliphilus AHT2 8.031429095 7.96006992 7.560404549 7.926959871 8.253765868 7.98020517 7.583781933 7.658163066 220718833 pcc Carbon cycling Carbon fixation Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 8.162635518 8.20243718 8.10006616 7.96064408 8.495728806 8.152414339 8.253885957 7.839621805 7.930233524 7.915819357 223985685 pstS Stress Phosphate limitation Holdemania filiformis DSM 12042 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichi;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Holdemania;species:Holdemania filiformis; 7.527478553 7.715740834 7.657002672 8.03286181 7.631008609 7.817570584 7.458851014 7.761020911 7.769469582 4519570 pstC Stress Phosphate limitation Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.333921498 8.355280531 7.6953657 7.702690582 8.275966621 8.521166982 8.207293756 8.575079341 7.944342604 7.973684424 8.096509374 22255690 nifH Nitrogen Nitrogen fixation Bradyrhizobium sp. 70b2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.277548868 8.346023485 8.386231121 7.836549361 7.276766078 7.71080358 7.94227362 7.955486365 7.804676752 7.511241614 7.738281368 60476316 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 8.045097724 7.874721053 8.124455603 7.688203251 8.335879033 7.889561788 8.121475823 8.456209296 8.227574294 75812337 sigma_70 Stress Sigma factors Anabaena variabilis ATCC 29413 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena variabilis; 7.075883335 7.263289902 6.965099386 7.548518531 7.586779179 7.271417177 7.21797509 118618440 linB Organic Remediation Pesticides related compound Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 8.409231853 8.16871769 8.118059089 7.916437884 7.767955633 7.869793711 8.005453512 8.211631584 7.869641879 7.816536346 7.358065931 91711578 katE Stress Oxygen stress Methanococcoides burtonii DSM 6242 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanococcoides;species:Methanococcoides burtonii; 8.630422942 8.558262608 8.566066808 7.945932177 8.829793282 8.098078021 8.434385358 8.762212761 8.046663219 222085561 pstB Stress Phosphate limitation Agrobacterium radiobacter K84 8.31492194 8.21407705 7.8079113 7.720279751 7.704878292 7.651754346 7.626968612 8.329263116 7.897432742 7.981319306 7.919445317 237846170 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.977948692 7.918241928 7.202893835 7.438376087 7.233084974 6.995195332 7.630468707 7.099882739 7.199233718 7.025292719 78219500 sigma_70 Stress Sigma factors Desulfovibrio desulfuricans subsp. desulfuricans str. G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 6.95459883 7.155133233 94983847 gyrB other category gyrB Spiroplasma chinense superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Entomoplasmatales;family:Spiroplasmataceae;genus:Spiroplasma; 8.015479753 8.308815098 7.378706739 7.481849106 7.540402405 7.044272725 7.243487469 7.736996326 7.440410266 7.333948139 7.600702223 151368477 phenol_oxidase Carbon cycling Carbon degradation Lignin Tricholoma terreum superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Tricholoma; 8.076882192 8.02453865 7.470985475 7.562873598 7.752243569 7.704863502 6.990445417 7.48509587 7.176429986 254980238 pstC Stress Phosphate limitation Nitrosomonas sp. AL212 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 7.022325043 7.20038795 220935354 dsrB Sulphur sulfite reductase Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 7.891452856 8.191003186 7.443543569 7.472989773 7.738804319 7.377870051 7.90173105 256781545 oxyR Stress Oxygen stress Streptomyces hygroscopicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces hygroscopicus; 7.425701355 7.413174491 7.844816234 7.474300967 7.479021505 8.097958458 7.788808463 7.563342417 7.817638806 251807432 sigma_70 Stress Sigma factors Gallionella ferruginea ES-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Gallionella;species:Gallionella capsiferriformans; 8.295605002 8.05740847 7.659960375 7.83849508 7.723012999 7.307380818 6.894105905 7.82920507 7.466661926 7.513399494 7.57337738 270738567 hydrogenase Energy process Energy process Desulfovibrio aespoeensis Aspo-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio aespoeensis; 8.263424125 7.972955382 8.405194915 7.724428328 8.230982424 7.994761575 7.83230355 8.296734875 7.856713278 126707779 bclA Organic Remediation Aromatics Aromatic carboxylic acid Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 7.524615002 7.055754322 7.188602955 7.414663283 283780465 sigma_70 Stress Sigma factors Pirellula staleyi DSM 6068 8.492829834 8.691156075 7.685622105 7.695647401 7.727288143 7.737779367 7.375965133 7.958485095 7.670576636 7.337026388 7.762421255 186911824 APS_AprA Sulphur adenylylsulfate reductase Candidatus Thiobios zoothamnicoli 8.24160364 8.531919556 8.344201963 8.169795269 8.470147733 8.174188188 8.204191608 8.758798838 8.498945879 8.858378253 8.707242568 13898439 dsrA Sulphur sulfite reductase uncultured phenanthrene mineralizing bacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 7.846013382 7.273510448 6.853445526 7.212807358 7.366832602 7.223930908 7.224390356 163784314 fnr Stress Oxygen stress Hydrogenivirga sp. 128-5-R1-1 8.037038996 8.28191707 7.301554604 7.481160714 7.507572981 7.500543017 7.715708766 7.265913885 7.341901208 157147011 phoA Stress Phosphate limitation Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 7.692478217 7.488680943 7.752528231 8.035938104 7.724061201 8.372053882 7.536417141 7.649036499 160366208 pilin virulence pilin Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.828080794 7.864327744 7.661521601 7.925668635 7.866646087 7.919446497 7.888983846 7.687722033 21672940 ppx Phosphorus Phosphorus utilization Chlorobium tepidum TLS superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 8.142083062 7.979526583 7.889135189 7.286873131 8.031103164 7.654044188 7.864953586 49610464 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Erwinia carotovora subsp. atroseptica SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 7.619263896 7.6961125 7.725002736 7.483655882 7.719277666 8.005364155 7.996617268 7.997079198 7.877213367 88864142 ArsC Metal Resistance Arsenic Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 7.358385793 7.560704787 7.02056317 7.50077543 7.398359199 255990833 ahpF Stress Oxygen stress Clostridium thermocellum DSM 2360 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 7.930072516 8.009589364 7.246359783 7.263611077 7.337624192 6.745496416 6.797328155 7.48114666 7.423801583 7.254428335 7.303235111 217987203 CopA Metal Resistance Copper Bacteroides eggerthii DSM 20697 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides eggerthii; 7.675332188 8.000461602 7.975545417 7.703838019 7.525623273 8.141504656 7.859086179 7.947346701 7.714338562 7.697900726 241879224 hydrogenase Energy process Energy process Desulfovibrio vulgaris RCH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 9.036177864 8.770627443 8.581359612 8.672036147 8.78194895 8.849151984 8.839413815 8.772152816 8.750329666 208010591 katE Stress Oxygen stress Aliivibrio salmonicida LFI1238 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Aliivibrio salmonicida; 7.362371787 7.531753497 7.559449419 7.59587441 7.336979354 7.749301963 7.099931941 7.135768624 7.373942197 146303598 4Fe_4S_ferredoxin Bioleaching Electron transport Metallosphaera sedula DSM 5348 7.30556108 7.79661712 7.418939795 7.419396895 7.117829197 108763766 ChrA Metal Resistance Chromium Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 7.027657157 8.046406972 7.87120456 8.160890738 7.206830786 8.313145802 7.386320495 7.722913863 7.297044354 89201533 CopA Metal Resistance Copper Bacillus cereus subsp. cytotoxis NVH 391-98 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cytotoxicus; 7.273155969 7.031652302 7.187391359 7.399533248 48995934 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. BAV1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 8.106158828 8.578625323 7.816270221 7.873811833 7.907537355 7.390799372 7.212557542 7.988571389 7.51250291 7.372417744 7.936178158 158251704 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 7.656662077 7.360520951 7.295776426 7.334473222 7.241547832 7.664386371 7.450660181 7.283548054 7.508338386 146313597 cellobiase Carbon cycling Carbon degradation Cellulose Enterobacter sp. 638 8.082675834 8.100839721 7.907027771 8.004333629 7.886805992 8.236529218 8.24741782 8.105421827 7.981565529 67782666 dsrA Sulphur sulfite reductase Chlorobium limicola DSM 245 7.065654687 7.021155647 7.224539581 6.946656097 7.401979668 257802231 srt virulence surface protein Enterococcus casseliflavus EC30 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus casseliflavus; 6.884165786 7.175346593 163737685 pimF Organic Remediation Aromatics Aromatic carboxylic acid Phaeobacter gallaeciensis BS107 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 8.716138712 8.932698976 8.783209164 9.171637933 8.879951781 8.998406128 9.213097239 9.192424348 9.178651868 9.002670858 76875975 xylJ Organic Remediation Aromatics BTEX and related aromatics Pseudoalteromonas haloplanktis TAC125 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas haloplanktis; 7.263169638 7.592562289 7.63673238 6.922719432 7.793259983 7.285629833 7.550149627 7.37871345 90104553 bclA Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.333369485 8.103893347 7.614866921 7.484581938 7.518987991 7.687969434 7.297475205 7.887119005 7.30762395 7.378683255 7.461595447 255941434 katE Stress Oxygen stress Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 8.467462441 8.438990094 7.934678212 7.806434757 7.954259358 8.380548959 7.449158178 7.821069424 7.764220113 8.147740566 169793498 narG Nitrogen Denitrification uncultured bacterium 8.517225112 8.373308082 8.26009874 8.210584838 8.243609052 8.377285548 7.851349463 8.586845812 8.265250781 8.131422646 8.368183875 146398884 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 7.341675382 7.555751021 8.409357802 7.892620189 7.694070309 8.331901009 7.273686674 7.252120691 7.40841408 161221614 ChrA Metal Resistance Chromium Halomonas anticariensis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 8.819076528 9.026331663 8.226656726 8.305748164 8.312555602 7.823654461 8.215221214 8.243769218 8.085818901 8.241913165 60615686 xylA Carbon cycling Carbon degradation Hemicellulose Arthrobacter sp. B-5-MG-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8.354103 8.264353768 7.998084856 8.217446325 7.882315107 8.049623744 8.377714519 8.0574109 8.250922577 7.984201553 8.021394886 150839334 pstA Stress Phosphate limitation Marinomonas sp. MWYL1 7.56771176 7.408151934 7.558458668 7.58519385 7.259597382 7.964220225 7.31655787 7.521219907 7.474506673 171681124 pheA Organic Remediation Aromatics Other aromatics Podospora anserina superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 8.079460433 8.224102225 7.600282403 7.641201506 7.655250548 7.561842292 7.696181308 8.035279783 7.465816749 7.348381727 7.936017121 197364326 vip virulence virulence protein Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 7.112187815 7.635178022 7.802483313 7.14166108 7.833147703 7.354005305 7.466955483 7.766479969 255326827 narI Stress Oxygen limitation Rothia mucilaginosa ATCC 25296 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Rothia;species:Rothia mucilaginosa; 7.499990485 7.51636342 7.431141711 7.146078758 7.344071236 7.325429293 7.346488876 7.38797755 7.442758786 38619363 type_III_secretion virulence secretion Pseudomonas sp. KD superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.470978413 8.766946056 8.785713654 8.588125087 8.218769542 8.270102689 8.749316171 8.685154448 8.53567636 8.346772783 8.512505303 212678934 dmsA Organic Remediation Others Providencia rustigianii DSM 4541 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 8.047500872 8.183879198 7.705053051 7.566099368 7.687342679 7.487522218 7.775043264 7.772092119 7.832554775 7.804311325 163751015 pilin virulence pilin Shewanella benthica KT99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella benthica; 8.266679861 8.430290627 7.91099316 7.953924473 7.709252509 7.777340369 7.614331961 7.79091421 7.830456452 7.852354366 19309740 phenol_oxidase Carbon cycling Carbon degradation Lignin Gaeumannomyces graminis var. graminis superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Gaeumannomyces;species:Gaeumannomyces graminis; 8.13585005 8.155776793 7.802255316 7.86660477 7.78795653 7.472962496 8.015864912 7.741605921 7.756907628 7.648262135 7.828000586 86169585 gyrB other category gyrB Weissella kandleri superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Weissella; 7.087552143 6.670048499 89896608 nifH Nitrogen Nitrogen fixation Desulfitobacterium hafniense Y51 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 7.406291056 7.383243391 7.506217089 7.680014053 7.40660377 7.799536927 7.402112927 7.608979633 7.651076163 83593495 ppx Phosphorus Phosphorus utilization Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 8.077375257 8.341146222 8.075792926 7.533312879 7.675256351 8.108601994 7.328661771 8.3292359 7.249008132 6.953111959 7.444850116 58038312 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Gluconobacter oxydans 621H superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter oxydans; 8.538866504 8.609425825 8.179254083 8.187454248 7.852180222 7.672001201 7.865784421 8.239206916 7.744166611 7.783124509 8.051250279 113733431 ara Carbon cycling Carbon degradation Hemicellulose Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 7.930850064 8.292042303 7.095541451 7.355596159 7.363246539 7.800477077 7.378538133 8.163563317 7.221139182 7.053738192 7.400494195 31071475 gyrB other category gyrB Nostoc entophytum superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc entophytum; 7.93162762 8.018163435 8.005821665 7.629594014 7.96041622 8.098275372 7.745120022 7.932381252 110623058 arsB Metal Resistance Arsenic Micrococcus luteus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus; 8.166404124 8.186397308 7.404047276 7.707568529 7.859715187 7.171577903 8.237691155 7.436647271 7.442709745 7.819612777 148253687 vanA Carbon cycling Carbon degradation Others Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.817496319 7.822581934 8.054141983 8.251493107 8.406472693 8.445874625 8.416708678 8.333722971 114799913 tfdA Organic Remediation Aromatics Chlorinated aromatics Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 8.820010365 8.650891179 9.189541615 9.245403533 9.491390944 9.004212743 9.712218071 8.922436907 9.497905541 9.904195349 9.287956416 167353850 hly virulence hemolysin Shewanella halifaxensis HAW-EB4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella halifaxensis; 7.35614802 7.219647081 7.491554862 7.264262722 7.305499905 7.131979106 7.246980417 118727307 ara Carbon cycling Carbon degradation Hemicellulose Clostridium cellulolyticum H10 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium cellulolyticum; 8.04350503 7.980274215 7.983863509 7.955629122 7.656418587 7.952650472 7.939813252 7.771221002 7.854936272 7.6829485 7.617426743 86357875 amyA Carbon cycling Carbon degradation Starch Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.158392509 7.849661941 7.612225388 7.800010978 7.767015731 8.165288535 7.76763455 7.992419002 7.726467817 254443080 ara Carbon cycling Carbon degradation Hemicellulose Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 8.378638366 8.113969214 8.213983653 8.745378127 8.402169289 8.11671125 8.753980675 7.889918842 8.582474082 8.438617812 8.589687367 6458241 pilin virulence pilin Deinococcus radiodurans R1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 7.751988575 7.286611641 7.137647218 6.724252131 6.648683903 7.657080826 7.121917011 7.050434724 6.977340163 5678640 napA Nitrogen Dissimilatory N reduction Pseudomonas sp. G-179 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae; 7.991024108 8.017955303 7.823128508 8.218425479 8.101849967 8.142552856 8.511394561 8.381285768 8.603181475 8.473525721 8.399238446 149811065 SMR_antibiotics Antibiotic resistance transporter Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.413499021 7.75441735 7.805454904 8.063579564 7.957068249 7.812416231 7.830549313 8.335926554 154175225 CopA Metal Resistance Copper Campylobacter curvus 525.92 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter curvus; 8.124907672 8.149135781 7.3677447 7.26819229 7.521645415 7.251753927 7.152047069 7.773675268 7.417008463 7.234789934 7.477194437 89349520 ureC Nitrogen Ammonification Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 7.476137512 7.572210418 8.339754251 8.585572176 8.175735073 7.967598197 8.186281261 8.154485585 256754238 Tet Antibiotic resistance other Clostridium papyrosolvens DSM 2782 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium papyrosolvens; 8.172116426 8.391877039 7.623682982 7.817439501 7.523718101 7.082225835 7.078143676 7.226775159 7.645098244 283441831 srt virulence surface protein Gardnerella vaginalis 409-05 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Gardnerella;species:Gardnerella vaginalis; 7.824342571 7.639698457 7.902790157 7.413672413 7.918732798 8.033521585 7.955181459 8.08912936 7.79130178 83573591 sigma_24 Stress Sigma factors Moorella thermoacetica ATCC 39073 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Moorella;species:Moorella thermoacetica; 8.502804807 8.243129305 7.845711188 7.835388905 8.090390543 8.501900791 7.894407887 8.427284456 8.143385172 8.245600553 8.32689663 189219868 sigma_24 Stress Sigma factors Methylacidiphilum infernorum V4 superkingdom:Bacteria;phylum:Verrucomicrobia;order:Methylacidiphilales;family:Methylacidiphilaceae;genus:Methylacidiphilum;species:Methylacidiphilum infernorum; 8.039754605 8.314488928 7.505012655 7.547679203 7.358529484 6.999332683 7.367100806 7.701327754 7.101910989 7.090579316 7.53982038 52347898 ahpC Stress Oxygen stress Bacillus licheniformis DSM 13 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 7.545951146 7.387378792 7.428095268 7.572076983 7.278413538 7.624130959 6.991974674 6.971287884 84043031 pcaG Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 7.298979941 7.389913062 7.910423557 8.220155209 7.827717954 7.911434755 7.733235789 7.744770341 217976720 ChrA Metal Resistance Chromium Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 8.10904905 8.143889229 8.00728009 7.918752201 7.707340933 7.791337292 7.743524256 8.047407638 7.810874558 7.932108809 7.750756492 239525660 pstB Stress Phosphate limitation Lactobacillus paracasei subsp. paracasei 8700:2 6.968726417 7.385234697 119898858 oxyR Stress Oxygen stress Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8.15867788 7.520676155 8.239952476 7.390828704 7.536691478 91200122 ZitB Metal Resistance Zinc Candidatus Kuenenia stuttgartiensis 7.051189065 6.862333751 29160317 exoglucanase Carbon cycling Carbon degradation Cellulose Melanocarpus albomyces superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;genus:Melanocarpus; 8.487220124 8.31826039 7.601221399 7.45089042 7.77741654 8.084047549 7.654869577 7.64571703 7.630716311 7.710615156 1679595 exoglucanase Carbon cycling Carbon degradation Cellulose Agaricus bisporus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Agaricaceae;genus:Agaricus; 8.006478786 8.507863898 7.638686936 7.743945762 7.556483928 7.363797218 7.754819473 7.672558295 7.585664711 7.42649162 109632429 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.815678404 7.838748038 8.35649223 8.258694799 8.01864487 8.268392892 7.71553439 7.822268561 8.020237375 94312455 ZntA Metal Resistance Zinc Ralstonia metallidurans CH34 8.249626353 8.340811698 7.994610368 7.600580203 7.757816255 7.616154691 7.609514245 8.129408287 7.649991387 7.935502558 7.810728717 119816225 CopA Metal Resistance Copper Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.336802114 7.718323273 8.016148029 7.405829385 7.763020652 255920575 sigma_24 Stress Sigma factors Actinosynnema mirum DSM 43827 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinosynnemataceae;genus:Actinosynnema;species:Actinosynnema mirum; 8.763359361 8.811858828 8.936015242 8.714746285 8.926140093 8.886539967 8.922931816 9.008557205 8.997392703 192764350 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.514923466 7.666332142 7.537460285 7.569345208 7.503557839 7.632858341 7.858223249 7.616813871 224948339 obgE Stress Radiation stress Clostridium methylpentosum DSM 5476 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium methylpentosum; 7.914998145 8.50410146 8.107462391 7.699690941 7.722584825 7.745987284 7.618514382 7.820603674 7.585654747 7.869875483 7.747133181 166197618 bphA Organic Remediation Aromatics Polycyclic aromatics Nocardioides sp. DF412 7.362489892 7.638904686 57223996 rd Organic Remediation Chlorinated solvents Dehalococcoides ethenogenes 195 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides;species:Dehalococcoides ethenogenes; 7.437470377 7.282847907 7.677328225 7.93840514 7.513741603 7.280956654 7.663061703 7.826509634 6540589 fcbA Organic Remediation Aromatics Chlorinated aromatics Pseudomonas sp. DJ-12 superkingdom:Bacteria;phylum:Proteobacteria; 7.587135581 7.648436318 7.950217587 6.708210238 7.338357991 7.328221092 7.825732845 37548730 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.217388125 8.28215708 7.51324499 7.961656115 7.835954145 7.741556389 7.880996082 7.902530268 7.90274815 7.7466751 196206503 amyA Carbon cycling Carbon degradation Starch Cyanothece sp. PCC 8802 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.262731378 7.317065334 7.371554494 6.788695367 7.599997639 44885888 endochitinase Carbon cycling Carbon degradation Chitin Clostridium paraputrificum superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 7.502347848 7.49177265 7.638701525 7.292075798 7.253216107 7.310664548 37521725 rubisco Carbon cycling Carbon fixation Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 8.418342936 8.310074222 7.377437741 7.602509359 7.263642206 6.961966807 7.425883066 7.189048167 7.489977598 89343847 proO Organic Remediation Aromatics Other aromatics Rhodoferax ferrireducens DSM 15236 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 7.734677227 7.775788751 8.131414948 8.273843318 8.004543261 8.376612175 7.792041673 7.550102802 7.720601479 41583400 FTHFS Carbon cycling Acetogenesis Lactobacillus johnsonii NCC 533 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus johnsonii; 8.857733191 8.996627762 8.533851673 8.623994182 8.335602832 8.417775549 9.052959976 8.505379253 8.934701174 8.777428749 8.919598038 33591637 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bordetella pertussis Tohama I superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella pertussis; 8.35262255 8.543155239 8.596679038 8.676084044 8.229429279 7.99389091 8.360703792 8.203983842 8.316457318 8.553057439 8.472288829 148513788 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.916847179 8.284294026 7.593724874 7.732136842 7.92729119 7.357423789 7.885962059 7.643801322 7.672863006 7.477720461 4633586 nosZ Nitrogen Denitrification uncultured bacterium 696C superkingdom:Bacteria; 8.27381542 8.268096531 7.965739224 7.934216619 7.711635728 7.812903961 8.243208695 8.279740176 8.080150627 7.551208438 7.936244543 76884047 pilin virulence pilin Nitrosococcus oceani ATCC 19707 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 8.009346557 8.198776978 7.924757775 8.160409135 8.02510081 7.8137557 8.351301193 7.859529569 91789025 gyrB other category gyrB Polaromonas sp. JS666 8.280019609 8.510863969 8.317920591 8.359305221 8.789754239 8.350548093 8.563276293 8.52254424 8.428999843 220903662 fnr Stress Oxygen stress Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 8.010138083 7.971587448 8.267263928 7.899108734 8.12192449 8.22945518 8.212886743 8.117299205 8.161811051 119369938 gyrB other category gyrB uncultured bacterium superkingdom:Bacteria; 8.218645681 8.191346029 8.249217166 8.213927888 8.033132499 7.674869403 8.457093589 8.107804678 8.160844376 8.271732054 8.077400976 146337673 tftH Organic Remediation Aromatics Chlorinated aromatics Bradyrhizobium sp. ORS278 7.906120994 7.963954532 7.9342983 7.986078859 7.88338635 8.130348004 7.938417704 7.997187752 8.047950902 119536750 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.233935777 7.962005384 7.957440658 8.191179672 8.118011586 8.152059378 8.014865391 8.063311623 7.96888557 59712593 pstS Stress Phosphate limitation Vibrio fischeri ES114 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Vibrio fischeri; 8.291684578 8.259167165 7.867649022 7.434741653 7.376918144 7.017558204 7.156473439 7.542015387 7.415224108 7.251410788 7.4222641 218989090 phenol_oxidase Carbon cycling Carbon degradation Lignin Paxillus involutus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Boletales;family:Paxillaceae;genus:Paxillus; 7.822533587 8.086875488 6.899516037 6.975729254 262376306 sigma_32 Stress Sigma factors Acinetobacter lwoffii SH145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter lwoffii; 6.706207075 7.184796524 6.619147927 7.425252698 29652558 narG Nitrogen Denitrification uncultured bacterium 7.915579213 7.559516353 7.561052732 8.122814629 7.694107059 7.522626425 7.658408457 7.677187422 221156052 sigma_70 Stress Sigma factors Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 8.946358027 8.765881949 9.346772531 9.217746415 9.065030973 89143214 gyrB other category gyrB Microbacterium terregens superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium; 8.277093676 8.409698758 7.829281159 7.71887 7.807574054 7.841618472 7.693162127 8.151924855 7.704230577 7.768077701 7.522380817 196199801 CopA Metal Resistance Copper Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.214393069 6.85798452 7.274040604 256375055 glnA Stress Nitrogen limitation Actinosynnema mirum DSM 43827 7.919245548 7.879538134 8.075875131 7.897280741 8.057591831 8.455337097 8.344773744 8.199548954 8.088311019 139478529 mer Metal Resistance Mercury uncultured soil bacterium superkingdom:Bacteria; 7.501915157 8.159172396 7.854515674 7.890127903 8.325173104 8.103838876 7.756793276 7.928377675 2905610 gyrB other category gyrB Shewanella pealeana superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 8.231620952 8.511844452 8.028671215 7.809097704 7.963491177 7.793738088 7.393977591 8.230909243 7.758613584 7.769249007 7.949774946 156868673 glnA Stress Nitrogen limitation Clostridium leptum DSM 753 7.745338259 7.969918667 7.272944902 7.429329823 7.872952954 7.577758518 7.313796326 7.858659242 7.342593691 7.3000909 7.530886692 91800324 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 8.236285101 8.109999305 7.914290403 7.229445168 8.161321656 7.977531325 7.797102774 8.022296129 108463491 mhpA Organic Remediation Aromatics Aromatic carboxylic acid Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 8.367619717 8.395647614 8.377607605 8.965315202 8.67513406 8.42717525 9.051635159 8.79510384 8.930951174 9.092333768 146280756 linB Organic Remediation Pesticides related compound Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 8.313324299 8.731514843 7.65582158 7.874164807 8.158597946 7.965990746 7.45180816 8.255793758 7.628811259 8.074730769 145553678 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 7.419324451 7.33513165 7.88078196 7.804695481 7.494059656 8.021263707 7.578796209 7.690331965 7.554299667 22252856 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.93089869 8.177202595 7.508362882 7.603445576 7.497071934 7.128452293 7.634152431 7.330308784 7.247346766 6.984911916 90205999 CopA Metal Resistance Copper Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 7.777416331 7.79987442 7.623190713 7.79642651 8.071390636 8.140209175 8.049962552 7.880548436 7.871285404 88858918 pilin virulence pilin Pseudoalteromonas tunicata D2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas tunicata; 7.039859041 7.437272315 6.999496212 7.240505782 78517773 CODH Carbon cycling Carbon fixation Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.509168885 7.601640516 8.011945367 8.244642502 7.860108053 7.788982449 7.747084046 8.114174087 7.74531529 119226140 gyrB other category gyrB Rhodococcus marinonascens superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.471070082 8.063542894 8.312376338 7.549293382 8.292083236 8.008635285 8.365389514 8.420591226 8.118937384 116626891 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 7.558165509 7.442073247 7.570258185 6.951364309 8.094950626 7.237542451 7.448867068 148258780 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.41626579 7.239768143 7.29499987 7.274372296 7.052959056 7.690308911 94985376 fnr Stress Oxygen stress Deinococcus geothermalis DSM 11300 7.940544969 7.863139485 7.648887111 7.935833961 7.987070022 8.140471182 7.792735255 7.552523079 7.621813921 63254675 obgE Stress Radiation stress Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 8.34958318 8.251374093 8.071069962 8.09133773 8.226049151 7.994305358 8.305979574 8.266038094 8.08536797 8.200908532 7.901843817 110224958 gyrB other category gyrB Streptococcus criceti superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 7.282503011 7.430755078 7.373597294 7.288880004 7.218517856 7.396503997 7.659650899 183217863 ara Carbon cycling Carbon degradation Hemicellulose Bifidobacterium animalis subsp. lactis HN019 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 7.577479383 7.32242014 7.420135205 7.374910445 7.295018813 7.792430198 7.348124013 7.268000512 7.603819808 114321026 CopA Metal Resistance Copper Alkalilimnicola ehrlichei MLHE-1 8.541481341 8.637208323 7.819902527 7.656352269 7.698844809 7.697314624 7.748404052 7.904687346 7.652181135 7.698726335 7.832223247 72122167 narI Stress Oxygen limitation Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.839846366 8.248918113 7.572392958 8.210235004 7.877275531 7.902327555 8.410790857 8.123929869 283810095 sigma_24 Stress Sigma factors Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 8.220538223 8.343543641 8.365563752 8.146372775 8.074770276 8.297400668 8.500150734 8.115091195 8.182823959 8.170339338 126032291 endochitinase Carbon cycling Carbon degradation Chitin Hypocrea jecorina superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 7.87489687 7.915650721 7.662731928 7.912728119 7.545596923 8.079177913 7.735696 8.003419164 7.860186424 83575645 nifH Nitrogen Nitrogen fixation Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 7.196233773 7.469590298 7.509748699 7.594989249 7.77777352 7.766985129 7.737542885 110287201 CopA Metal Resistance Copper Mesorhizobium sp. BNC1 8.057236455 8.046483469 8.071721342 7.831741668 8.405817244 8.078337483 8.215678792 8.189888731 8.149894097 188534199 MFS_antibiotic Antibiotic resistance transporter Erwinia tasmaniensis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 8.378653903 8.374255469 8.074937119 7.949934598 7.981204814 7.984590933 7.7654668 8.351796312 7.644360426 7.583730998 7.798654467 211581813 nahF Organic Remediation Aromatics Polycyclic aromatics Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 7.471948415 7.604943953 7.579052764 7.389031777 7.286147052 7.630917761 7.564168069 188584439 pstB Stress Phosphate limitation Methylobacterium populi BJ001 8.107666054 8.333384 7.781535727 7.655203984 7.690010786 8.049430584 7.701831475 8.209625776 7.675078166 7.616807252 7.786763195 19774217 dsrA Sulphur sulfite reductase Desulfovibrio aespoeensis superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 7.970031234 7.868686979 7.743992198 7.238601048 8.071672847 8.124772201 7.934606071 7.852317696 7.967572334 261409752 katE Stress Oxygen stress Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.981833901 8.305966085 7.395902607 7.66598791 7.737979104 7.785426429 7.330423891 6.997819866 7.477357808 32397841 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 8.159200675 8.337687333 7.98088903 7.812129403 7.848377891 7.465964192 7.784206532 7.766830282 7.735935465 7.654487779 7.471427246 20092251 dsrB Sulphur sulfite reductase Methanosarcina acetivorans C2A 7.746087081 7.863876917 7.823276594 7.432548244 7.570313127 7.71077417 7.76451302 7.534782553 5702381 TerC Metal Resistance Tellurium Proteus mirabilis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus; 7.024424549 7.350053634 7.296729441 7.529505589 7.068785208 7.218344986 7.600283326 120404219 CadA Metal Resistance Cadmium Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 7.900920238 8.122933938 7.904124637 7.397943721 8.115675744 7.983152392 8.191740751 8.177814407 148257106 phn Organic Remediation Herbicides related compound Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.768088121 8.599324824 8.120875753 8.039339928 8.706455229 8.416512756 8.756174339 8.251199313 8.277975891 8.138562041 151563882 katE Stress Oxygen stress Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 8.14247905 8.170774593 8.039155581 7.935536747 7.518313049 8.04201136 8.188376508 108759775 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 7.88823901 7.99296511 7.382156109 7.161295559 7.059198801 7.284589639 7.208217768 7.412258154 6.912437402 6.821362114 7.100735812 187928414 phdCI Organic Remediation Aromatics Polycyclic aromatics Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.185112347 8.816484972 8.049965122 8.186717492 7.749524902 8.112296674 8.45443918 8.395045414 8.423997894 8.246461496 8.234857332 167349546 pcc Carbon cycling Carbon fixation Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 7.336018955 7.181840824 7.165861323 7.298464389 7.279819916 7.385089267 6014526 dsrA Sulphur sulfite reductase Solar Lake Mat Clone50 superkingdom:Bacteria; 7.644019987 7.544066632 7.375166012 7.044075757 7.027970654 7.627753686 7.589524493 7.161866098 7.284848032 118687554 pmdAB Organic Remediation Aromatics Others Marinomonas sp. MWYL1 7.604047687 7.980804239 7.843378068 7.433170511 8.007056558 7.469736713 7.675308724 7.666531191 49610845 ZitB Metal Resistance Zinc Erwinia carotovora subsp. atroseptica SCRI1043 7.621740623 8.035180215 8.257840726 7.279632479 8.068689376 7.498894038 7.769516944 7.963964414 170768907 SMR_antibiotics Antibiotic resistance transporter Escherichia albertii TW07627 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 7.694206124 7.294925758 7.477419201 7.197557867 7.059347329 7.337522214 126708478 ureC Nitrogen Ammonification Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 8.004337933 7.762805518 8.058663578 8.236611869 7.878398375 8.626191891 7.74470328 7.728115087 7.900085195 15074319 SMR_antibiotics Antibiotic resistance transporter Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 7.753158434 7.611703924 7.436568127 7.258396451 7.978329583 7.831024259 7.66208966 7.368523005 7.749992999 60476012 rubisco Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.572561164 8.588437277 7.788826129 8.197275971 7.950517865 8.093809418 8.039565291 8.224043082 8.127443526 8.140493006 7.997929606 77378581 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.471445316 8.117198753 7.662993692 7.718641996 7.780410525 8.160898477 7.163264009 8.322560126 7.296390511 7.016066971 7.699060977 153852719 sigma_70 Stress Sigma factors Dorea longicatena DSM 13814 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Dorea;species:Dorea longicatena; 8.090491949 8.220761657 8.160044679 8.253043226 8.074814563 8.260980016 8.191015076 8.20953758 8.261991495 28378213 narG Nitrogen Denitrification Lactobacillus plantarum WCFS1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus plantarum; 8.202764702 8.506222167 7.673798351 7.667194021 8.050639051 8.000898125 7.585181931 8.200541659 7.843232885 7.7831616 8.086206251 196252503 endoglucanase Carbon cycling Carbon degradation Cellulose Clostridium thermocellum DSM 4150 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 9.35977606 9.483986613 8.204733777 8.051023946 8.178359953 7.820559008 8.022002616 87281113 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.360083693 8.181809837 7.969926098 8.016601045 8.232330674 8.116186815 8.246818457 8.146900655 7.606823834 209958030 glnA Stress Nitrogen limitation Rhodospirillum centenum SW 7.251894089 7.342223416 7.504313852 7.913098307 7.363777406 8.167198408 7.065822153 7.460689746 7.142056135 254395959 MFS_antibiotic Antibiotic resistance transporter Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 8.823926134 8.071433721 8.445381956 8.08850515 8.550128694 8.223531535 8.199543669 8.490967808 8.228474236 192810313 ArsC Metal Resistance Arsenic Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.399710282 8.361411059 7.85763641 7.730797899 7.893675454 7.787845168 7.562951105 8.214944901 7.810635503 8.184029475 7.84641871 73541593 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.61816625 7.656033765 7.584551867 7.811811197 8.107111868 7.946762092 8.288634239 7.898262338 7.814508129 145252738 CDD Organic Remediation Aromatics Other aromatics Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8.134055355 8.158234267 7.976458314 7.908919289 8.465303763 8.209352366 8.320016011 8.142019435 7.996354929 88815199 pimF Organic Remediation Aromatics Aromatic carboxylic acid marine actinobacterium PHSC20C1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 8.438807467 8.416427499 8.186784069 8.217112853 8.057989965 8.030787067 8.6086235 8.557957682 8.760429445 8.505266147 8.683989668 189421123 pstB Stress Phosphate limitation Geobacter lovleyi SZ 7.802045775 7.871441649 7.63218701 7.928474336 7.796293937 8.000922712 7.657534737 7.721884166 7.60244692 147886441 B_lactamase Antibiotic resistance Beta-lactamases Acinetobacter baumannii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 8.015412785 8.255401493 7.748947079 8.006083165 7.959700199 7.417246165 7.745859826 8.001207482 7.901941901 7.92737987 7.899612403 88862218 BchY other category chlorophyllide reductase Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 7.891903032 7.583923247 7.637192116 8.040028244 7.966842269 7.82540266 7.624123025 7.944107039 157411456 napA Nitrogen Dissimilatory N reduction uncultured prokaryote 8.015290035 8.401536311 7.069976714 7.202020793 7.301626486 21223326 TerD Metal Resistance Tellurium Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.401501994 8.396355348 7.929691164 7.98936104 7.824172009 8.067755517 7.954346644 7.808493445 7.954224927 7.769936808 48728358 B_lactamase_C Antibiotic resistance Beta-lactamases Laribacter hongkongensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Laribacter; 8.106821049 8.13965048 7.681977267 7.730834832 7.95366807 7.977437149 7.621672368 8.210466359 7.637371677 7.5728337 7.718683512 170683523 exaA Organic Remediation Chlorinated solvents Escherichia coli SMS-3-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 7.152783517 7.400462335 7.407502559 7.291166027 7.535738309 7.511601791 7.234066582 7.17113454 7.637454093 162452286 CadA Metal Resistance Cadmium Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 8.161686393 7.951800039 7.757695293 8.040123169 8.53306371 8.658570878 8.441771756 8.316411358 8.243680746 158140301 CadA Metal Resistance Cadmium Alkaliphilus oremlandii OhILAs 8.150015509 8.404587734 7.473947614 7.136751409 7.591537367 7.247693145 7.345780359 7.131282825 91777783 nahA Organic Remediation Aromatics Polycyclic aromatics Burkholderia xenovorans LB400 8.754729714 8.538708392 8.650531334 8.74051091 8.390938995 8.828897071 8.059790904 8.440854014 7.829511137 7.832137733 260751749 rubisco Carbon cycling Carbon fixation uncultured bacterium 7.882817511 7.330228688 7.706953872 7.422314421 7.223719571 7.75154202 7.313473616 7.594051607 7.382579656 145015911 tfdA Organic Remediation Aromatics Chlorinated aromatics Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 7.773999635 7.578818539 7.536115798 7.05055559 7.405740006 7.671393111 7.469198273 7.850273752 77996434 pstB Stress Phosphate limitation Carboxydothermus hydrogenoformans Z-2901 8.574751447 8.705929869 8.271077588 7.984515859 8.078511954 7.72358993 7.35421038 8.022505094 7.611343592 7.558490227 8.044586142 94984759 pstB Stress Phosphate limitation Deinococcus geothermalis DSM 11300 8.337397079 8.181204682 8.353110186 8.273634753 8.177037008 8.204921238 8.255977759 8.494824057 8.573336192 8.210516908 229592876 katE Stress Oxygen stress Pseudomonas fluorescens SBW25 8.266601722 8.251965812 7.826556838 7.842067501 7.761015123 7.703721346 8.092331983 8.393744583 7.722321306 7.667498235 7.900404273 260892505 hrcA Stress Heat shock Ammonifex degensii KC4 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Ammonifex;species:Ammonifex degensii; 8.15236351 8.091406611 7.270166918 7.505321111 7.395008354 7.651475361 6.958092258 7.403246011 7.421016503 7.00881253 68466314 tftH Organic Remediation Aromatics Chlorinated aromatics Candida albicans SC5314 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;genus:Candida;species:Candida albicans; 7.532356404 7.392737592 7.524319769 7.30573833 7.498556412 7.924591482 7.544107602 7.463840283 7.703543927 54310848 phtA Organic Remediation Aromatics Aromatic carboxylic acid Comamonas sp. JS46 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 7.913192801 8.353840421 8.857672668 8.948538967 8.560543034 8.722939159 8.595201627 8.610251888 8.662678131 75699998 pstB Stress Phosphate limitation Anabaena variabilis ATCC 29413 7.967408308 8.272552533 7.513855094 7.270684263 7.448644231 7.5168854 7.356932571 8.036294829 7.371856439 7.221528862 7.62177724 73537801 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.313071948 8.201410059 8.017417684 8.122160649 8.126108504 8.132335131 8.16791799 7.894756182 7.796288779 115371850 ppx Phosphorus Phosphorus utilization Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 7.64302959 7.877673712 7.571315545 8.341947346 8.224443086 8.2695411 8.388364064 7.970228783 77458718 cytochrome Energy process Energy process Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.10735055 8.127105529 7.784192728 8.091658663 7.912260814 7.78531377 8.22911595 7.99934598 8.530709532 8.222697935 7.81494561 213967523 CopA Metal Resistance Copper Pseudomonas syringae pv. tomato T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 7.562868922 7.634183834 7.580908114 7.69407399 7.380288522 7.301868382 7.828663872 119447721 silC Metal Resistance Silver Alteromonadales bacterium TW-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales; 8.104845185 8.348093741 8.220514718 7.834719616 8.532002215 7.852540149 7.983680659 8.146629921 8.260258089 118027429 nitA Organic Remediation Aromatics Other aromatics Burkholderia phymatum STM815 8.173898995 8.452378845 8.293621728 7.859352163 8.172994964 7.964748805 8.097185507 8.285537161 8.14106925 8.221409557 8.07575432 126172505 cytochrome Energy process Energy process Shewanella baltica OS155 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 7.586799102 7.226107113 7.224927031 7.06673949 7.100907694 7.443901169 7.213822997 7.0987843 88932794 Ni_Fe_hydrogenase Energy process Energy process Dehalococcoides sp. BAV1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 8.260139736 8.284200293 7.659278101 7.555999695 7.844074635 7.909635805 7.177226158 7.461840301 7.122599085 7.704568919 240273956 endochitinase Carbon cycling Carbon degradation Chitin Ajellomyces capsulatus H143 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 8.468172301 8.515429163 8.131711885 8.239359644 8.207101795 8.503064695 8.75799717 9.104023144 9.033264166 8.713034671 262182584 B_lactamase_C Antibiotic resistance Beta-lactamases Corynebacterium aurimucosum ATCC 700975 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium aurimucosum; 8.222708356 8.2936735 8.158370275 8.153801312 7.936420272 8.08846633 8.623777754 8.408766746 8.487241347 8.216855569 8.443821465 260606212 iuc virulence aerobactin Vibrio coralliilyticus ATCC BAA-450 6.620936803 7.01320328 6.556490096 7.528668583 110549451 tutFDG Organic Remediation Aromatics BTEX and related aromatics Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 7.608226257 7.770344049 7.471172941 7.834580228 7.848279809 7.892424848 7.780329433 7.791889353 55377209 ZntA Metal Resistance Zinc Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 8.483947921 8.195579021 8.154335766 8.403983662 8.337344217 8.344203715 7.976337025 7.894295786 8.032452783 161383251 fnr Stress Oxygen stress Phaeobacter gallaeciensis 2.10 6.786601252 6.895910675 7.049407762 6.712157874 6.860589247 7.162909899 6.955575803 7.444768265 116651683 fnr Stress Oxygen stress Burkholderia cenocepacia HI2424 8.241336582 8.347764494 7.768414636 7.818488165 8.22098434 8.519490725 7.739885114 8.40588498 8.238757716 8.094910001 8.481623931 71000641 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 8.165232768 8.162597546 7.169943076 7.067826559 7.502253771 7.453484202 7.338522394 7.886153464 7.285825774 7.126048651 7.586891099 157837425 catB Organic Remediation Aromatics BTEX and related aromatics Chromohalobacter sp. HS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter; 7.7702913 8.071439213 8.502703911 8.911090652 8.267764392 8.595786858 8.083233555 8.141757094 8.304798664 55978077 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.616277568 7.492537641 7.136828373 7.555798523 194683151 pimF Organic Remediation Aromatics Aromatic carboxylic acid Proteus mirabilis HI4320 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 7.095517211 6.991639099 7.038765265 6.776188286 6.891618285 117993234 Catechol Organic Remediation Aromatics Other aromatics Burkholderia phytofirmans PsJN 7.295798238 7.403565132 7.584193667 6.831359337 7.244568242 7.64694114 7.034661649 7.311219617 7.314507805 221157919 ArsC Metal Resistance Arsenic Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 7.984047286 8.017751467 7.712829704 7.694198086 7.438960939 7.562077048 7.253158277 7.912530952 7.455956021 7.604870963 7.378291819 82948436 grpE Stress Heat shock Magnetospirillum magneticum AMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 8.313672173 8.070350063 7.792576569 7.761957173 7.979015087 7.82353521 8.126406689 7.649041623 7.941765905 8.084636383 7.97774593 10174677 TehB Metal Resistance Tellurium Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 7.957950152 7.944867399 7.383387291 7.47811968 7.414383803 163746536 atzC Organic Remediation Herbicides related compound Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 8.533749155 8.426838312 8.627724044 8.600480729 8.328590609 8.742632928 8.697726898 8.45991992 8.530027537 8.425722672 8.329108028 118037933 ChrA Metal Resistance Chromium Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.800864089 7.700214529 7.592338177 7.881365881 7.770835064 7.815569352 7.989518886 7.719688162 89900562 nmoA Organic Remediation Aromatics Nitoaromatics Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 8.394743457 8.341352787 8.442597141 8.150742207 7.987223645 8.070511938 7.949245638 8.112950037 8.222889676 8.159702259 8.012648953 256634609 pstA Stress Phosphate limitation Acetobacter pasteurianus IFO 3283-01 8.214959582 8.192556587 7.874282411 7.506938258 7.772456734 7.176873337 7.728276675 7.335713192 7.628813761 7.551241864 212710498 SMR_antibiotics Antibiotic resistance transporter Providencia alcalifaciens DSM 30120 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 7.282611207 7.018941713 255279223 ureC Nitrogen Ammonification Geobacillus sp. Y4.1MC1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 6.993575893 7.056626668 7.167621701 7.35685915 7.684133878 7.028915173 7.465550369 160917811 narG Nitrogen Denitrification uncultured bacterium 8.587065214 8.314527149 8.239567412 7.959049371 8.371601762 8.33351572 8.077936528 8.26905941 139003375 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.154948678 8.004850051 7.076915603 7.336301466 7.092766208 7.525007769 112774552 akbF Organic Remediation Aromatics BTEX and related aromatics Delftia sp. AN3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia; 8.14521855 8.451532532 8.38023494 8.204050837 8.686421797 8.750338014 8.607234387 8.395056955 118413335 pstC Stress Phosphate limitation Campylobacter fetus subsp. fetus 82-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter fetus; 8.524790623 8.75670825 8.0832664 8.370263397 8.308339283 7.877829197 8.562176479 8.052865885 8.343705768 8.494657202 8.674661703 127513207 cytochrome Energy process Energy process Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 8.503944884 8.432154338 8.470070881 8.617416969 8.854676179 8.568285484 9.021620863 8.664318695 8.610752649 21673682 dsrA Sulphur sulfite reductase Chlorobium tepidum TLS 7.757393766 7.558098722 7.82457053 7.79703905 7.52720695 7.830861092 7.290711956 7.268877097 7.301778382 57224568 nifH Nitrogen Nitrogen fixation Dehalococcoides ethenogenes 195 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides;species:Dehalococcoides ethenogenes; 7.966600094 8.187200858 7.347765545 7.273545626 7.115700971 7.150254074 6.903330054 7.709089801 7.3763183 7.384778559 7.464931237 118018608 TerC Metal Resistance Tellurium Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 8.563655399 8.474286253 8.145253136 8.430837861 8.231374285 7.88853786 2375 pectinase Carbon cycling Carbon degradation Pectin Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 7.788689665 7.885199254 7.58366367 7.670785076 7.721092967 7.776823525 7.817835326 7.540965372 7.55909405 212704155 cydB Stress Oxygen limitation Desulfovibrio piger ATCC 29098 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio piger; 7.933617753 8.068064855 8.030797073 7.085844867 7.875373975 7.830463225 7.906410904 7.323650744 3560021 exoglucanase Carbon cycling Carbon degradation Cellulose Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.297626798 8.105588013 7.77936527 7.614701449 8.337789564 8.516850918 8.21731635 8.288881168 8.169363141 8.432318818 8.044573382 77458551 benD Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens Pf0-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.193390778 8.289739613 8.12410957 7.77781718 8.347756935 8.02889169 7.869654395 7.960851309 152980761 sigma_70 Stress Sigma factors Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 7.921209707 8.077162143 7.921112601 7.820972723 7.632187074 7.901082248 7.835299993 7.982567986 7.892164423 7.994479745 7.767213284 117928859 CopA Metal Resistance Copper Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 7.690753033 7.668799132 7.67529284 7.404985712 116098033 gyrB other category gyrB Lactobacillus brevis ATCC 367 8.038092307 8.079886806 7.21849406 7.661276149 7.315238075 7.34439042 7.626791737 7.597899191 7.570294598 7.428698801 7.340179854 161788155 phoB Stress Phosphate limitation Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 8.432119637 8.511798949 8.389331964 8.16555086 8.622695111 8.229443554 8.402276264 8.624524935 8.440329169 145243218 atzA Organic Remediation Herbicides related compound Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.569277249 7.609021168 7.582577469 7.635146483 8.13740122 8.031852293 7.928979251 7.977776335 7.979653311 262198806 fnr Stress Oxygen stress Haliangium ochraceum DSM 14365 7.665502206 7.799463024 7.731340395 7.18413323 7.673413418 7.612669122 7.477257359 7.911377542 77961906 tutFDG Organic Remediation Aromatics BTEX and related aromatics Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 7.216642214 7.443006064 7.297192107 6.749342685 7.549633904 1652875 sigma_24 Stress Sigma factors Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 7.959084177 7.93891354 7.356685746 7.370450425 7.299873849 6.660840846 7.683860563 7.057127719 7.188747127 34017130 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 8.095503069 8.177770342 7.339956725 7.493211828 7.639928825 7.75146734 7.689159275 7.764139159 7.648861524 7.794333826 169607691 pheA Organic Remediation Aromatics Other aromatics Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 8.279153208 8.685016148 7.981268936 8.045658994 8.044047568 8.078609913 8.333743123 8.272427637 8.565512958 8.182988715 8.226521409 210617641 sigma_70 Stress Sigma factors Clostridium nexile DSM 1787 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium nexile; 8.444452006 8.585795576 8.123167519 7.963382752 8.282082046 8.265192153 8.60647989 8.63167311 8.147867923 170142846 Arylest Organic Remediation Aromatics Other aromatics Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 7.428733899 7.305456323 7.414670625 197210275 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.368380535 8.373617637 7.701302897 7.637969208 7.884954081 7.629604979 7.491164614 7.902988984 7.729853483 7.281723998 7.457003429 94968598 pilin virulence pilin Candidatus Koribacter versatilis Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 7.903147197 7.50123299 7.416728701 7.599385281 7.471823033 7.851287919 7.387862334 7.327702144 154154452 alkJ Organic Remediation Other Hydrocarbons Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 7.508086905 7.578979995 7.768260707 7.599455228 7.208148309 7.574234514 209520490 tfdA Organic Remediation Aromatics Chlorinated aromatics Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.802618724 7.703901202 7.603880785 7.492375685 7.601952772 7.860955769 7.734695966 7.490158151 7.745800221 221064905 tfdA Organic Remediation Aromatics Chlorinated aromatics Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.921955109 8.041305213 7.862587393 8.050635098 7.980178209 8.093207275 8.246818457 8.952987655 8.700542223 170093381 AceB Carbon cycling Carbon degradation others Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 7.636951379 7.502978918 7.716768899 7.882892876 7.699425373 8.461364236 7.870597623 7.885624912 7.707165399 134136539 sigma_38 Stress Sigma factors Burkholderia vietnamiensis G4 7.700638371 7.892073342 8.304030644 7.495436072 7.83829514 7.930937559 7.601270945 8.050856383 7.589813875 260881557 cda Carbon cycling Carbon degradation Starch Mitsuokella multacida DSM 20544 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Mitsuokella;species:Mitsuokella multacida; 7.839324276 8.010624485 8.375985817 7.841554572 8.038823563 8.14925464 7.863526302 8.216236378 7.575656992 199591984 Al Metal Resistance Aluminum Lactobacillus rhamnosus HN001 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 7.685510011 7.736246214 7.615420684 7.458087712 7.373503775 147830 toxin virulence toxin Escherichia coli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 8.072159086 8.39410003 7.592723001 7.596272762 7.835965419 7.778679367 7.559900258 7.861520241 7.380530239 7.526106016 7.752999189 116235161 nosZ Nitrogen Denitrification Aquitalea sp. PGP-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Aquitalea; 7.686960112 7.485318547 7.353685349 7.288620887 7.166339977 7.63573269 7.660171366 7.280172656 7.802522873 256643201 obgE Stress Radiation stress Acetobacter pasteurianus IFO 3283-22 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pasteurianus; 7.865136976 7.856676577 7.748232844 7.852891343 7.869633735 7.864702943 7.874266452 7.929612986 7.618771552 145572336 SMR_antibiotics Antibiotic resistance transporter Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 7.7498287 7.890653962 8.11078802 8.362219746 7.974905175 7.939936133 7.710934262 7.805126611 7.604356707 86136078 pcaG Organic Remediation Aromatics Other aromatics Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.844419926 8.298417733 7.830855916 7.871339407 7.885816044 7.809504765 8.11215449 8.28309972 8.16193956 7.997786458 8.085874708 218662428 pstB Stress Phosphate limitation Rhizobium etli IE4771 8.173012843 8.257713897 7.783173684 8.040544003 7.953962565 7.972705254 7.825521031 7.937371052 8.004633852 8.004341245 7.920515129 156450777 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 7.718342619 7.861543259 7.957173351 7.283262972 7.766472352 7.971151408 7.672003612 7.991090512 7.658995416 11078715 gyrB other category gyrB Pseudomonas stutzeri superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.105985558 8.330355631 7.096531156 7.436104309 7.690435848 7.635508586 7.121622304 7.840368778 7.049701281 7.105311667 150839319 phoB Stress Phosphate limitation Marinomonas sp. MWYL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 7.931942486 8.032660425 7.066959794 6.770321036 7.503604134 7.267947547 6.793265358 7.712314915 7.201757803 7.317377044 7.60644347 222525188 SMR_antibiotics Antibiotic resistance transporter Chloroflexus sp. Y-400-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus; 7.92996337 8.094549704 7.969993562 7.774600071 7.70493006 7.853109404 7.685732636 7.789790399 94264175 gyrB other category gyrB delta proteobacterium MLMS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 8.197550928 8.121950062 7.864821165 7.693103265 7.530761824 7.268079843 7.959695114 7.636270498 7.568437842 7.720907685 7.603712593 218779418 APS_AprB Sulphur adenylylsulfate reductase Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 7.80336688 7.799732705 7.50280824 7.435991363 8.018878629 7.983785828 7.914591417 7.504954238 7.906841472 227948802 B_lactamase_C Antibiotic resistance Beta-lactamases Meiothermus ruber DSM 1279 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 8.210313967 8.1978309 8.041972483 8.140570158 8.549491466 8.140049653 8.330384056 8.095262973 8.617756631 194681790 MFS_antibiotic Antibiotic resistance transporter Proteus mirabilis HI4320 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 7.399023572 7.172689793 7.346679583 87281603 CopA Metal Resistance Copper Synechococcus sp. WH 5701 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.190049173 8.739076291 8.000920346 7.510981333 7.931173616 7.917324087 7.598295093 7.729578522 7.60395305 7.598695647 7.942231026 68343596 CopA Metal Resistance Copper Pseudomonas fluorescens Pf-5 7.177450681 6.757533157 7.096430913 7.106118819 6.782770527 7.499454988 142001047 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.980821628 7.95617607 7.812779726 7.666032678 8.372286534 8.080151936 8.302528834 7.921030205 8.347257732 134298506 APS_AprA Sulphur adenylylsulfate reductase Desulfotomaculum reducens MI-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum reducens; 8.112094297 8.361644731 8.181163676 8.236817493 8.592426693 8.356090256 8.279476314 8.230331278 8.437039615 169793642 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.772673949 7.792416741 7.453618776 7.383500241 75702456 gyrB other category gyrB Anabaena variabilis ATCC 29413 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena variabilis; 7.052213848 7.363060885 7.243681455 7.417015566 7.639567893 7.578881474 7.220788762 7.711164373 145299696 napA Nitrogen Dissimilatory N reduction Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 8.356351331 8.481361548 8.429042869 8.460836063 8.568960549 8.080839374 8.349244918 8.623588732 8.666231948 8.33972563 218989100 phenol_oxidase Carbon cycling Carbon degradation Lignin Hygrophorus olivaceoalbus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Hygrophoraceae;genus:Hygrophorus; 7.675353451 8.242614903 7.899165521 7.92275359 7.853529612 7.528225141 8.014181887 7.536288705 112462785 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.346517761 8.279349579 7.860863457 8.586182588 8.434004361 8.614772365 8.623637999 8.649251972 8.172180075 119715227 TehB Metal Resistance Tellurium Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.196808414 8.356234179 8.345395907 8.629136613 8.210789756 8.526619317 8.343345749 8.680058442 8.547918192 177908327 ppx Phosphorus Phosphorus utilization Clostridium perfringens D str. JGS1721 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium perfringens; 7.178005702 7.106055326 7.136986884 39649685 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.479160328 8.308896386 7.937622539 8.15264481 8.242309155 8.525491358 8.753425951 8.803156424 8.554709191 8.479094636 110635153 xylA Carbon cycling Carbon degradation Hemicellulose Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 7.687600977 7.802879763 7.700553439 7.774072369 7.443779613 7.649049032 7.572950691 7.434320186 159175834 pcc Carbon cycling Carbon fixation Vibrio campbellii AND4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.430722101 7.990404494 8.375897247 8.288581912 8.585215217 8.089136652 8.463028267 8.399139627 8.167965169 133914063 NiR Nitrogen Assimilatory N reduction Saccharopolyspora erythraea NRRL 2338 7.350239939 7.299662444 7.685481217 7.776973148 7.278630702 7.724725913 7.34761762 7.297049939 7.410191871 87282283 amyA Carbon cycling Carbon degradation Starch Synechococcus sp. WH 5701 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.468458216 8.597939031 8.686926185 8.425414825 9.095542377 8.436503739 8.992574624 8.636732895 8.578191182 167623466 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Shewanella halifaxensis HAW-EB4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella halifaxensis; 7.175714397 7.214324338 6.928255588 7.275171784 219550277 pstB Stress Phosphate limitation Vibrio parahaemolyticus 16 7.64097047 7.481268188 7.448934893 7.219286241 7.48760594 7.080444446 7.062993141 7.689123988 255318361 pstA Stress Phosphate limitation Acinetobacter radioresistens SK82 8.059873978 8.313002651 7.773725082 7.55632875 7.779156985 7.632918715 7.621767182 7.686473899 7.381790961 13424569 nifH Nitrogen Nitrogen fixation Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 8.329762073 8.051831482 8.359082751 7.647104452 8.345021584 7.823888301 8.300340892 8.380848401 8.201877748 192897618 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 8.011721378 7.886536767 7.715029883 7.958717923 8.137799835 8.15164128 7.92459855 7.759039941 239833289 phoB Stress Phosphate limitation Ochrobactrum intermedium LMG 3301 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 7.82253759 7.726117873 7.589995611 7.633517631 7.650706303 8.03850565 7.588475498 8.137042675 7.491423955 118424352 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.876701461 7.652454418 7.611083455 7.026628116 7.711051616 7.75215946 7.594165302 7.352754915 7.613727834 146389594 katE Stress Oxygen stress Pichia guilliermondii ATCC 6260 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Meyerozyma;species:Meyerozyma guilliermondii; 7.444746673 7.076814125 7.031261707 6.740822609 6.931645411 7.267353599 139478567 mer Metal Resistance Mercury uncultured soil bacterium superkingdom:Bacteria; 7.817078168 8.144967073 7.65261508 7.687221943 7.819445416 8.150963117 7.692772128 8.136252297 7.821028819 7.953959192 8.084852137 109644678 gyrB other category gyrB Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 7.598511157 7.790710768 8.179708054 8.136481916 7.39906992 7.090369662 7.434109871 7.648682116 282848955 ppk Phosphorus Phosphorus utilization Veillonella parvula ATCC 17745 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Veillonella;species:Veillonella parvula; 7.113048646 7.18428534 6.918375599 168703277 sigma_24 Stress Sigma factors Gemmata obscuriglobus UQM 2246 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata;species:Gemmata obscuriglobus; 8.276234288 8.149505203 8.227599086 8.2738128 8.313118639 8.380135789 8.626328789 8.418821893 8.599084258 8.543759037 8.625599434 223986625 pstS Stress Phosphate limitation Holdemania filiformis DSM 12042 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichi;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Holdemania;species:Holdemania filiformis; 8.010645493 7.902378599 7.99635121 7.249780125 8.197091913 7.435559854 7.713662804 7.956975822 7.63641413 255114007 cda Carbon cycling Carbon degradation Starch Thermoanaerobacter italicus Ab9 7.677789366 7.388881131 7.255978672 194100317 DNA_ligase Bacteria phage REPLICATION Enterobacteria phage EcoDS1 order:Caudovirales;family:Podoviridae;genus:T7-like viruses; 7.72398548 7.524639306 7.601016457 7.310598102 7.978135435 7.62560825 7.63228643 7.659344904 146193595 nhh Organic Remediation Aromatics Nitoaromatics Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.054751246 8.159411559 7.586986741 7.75873157 8.506833275 8.50004461 8.548463261 8.165433635 33573212 gdh Nitrogen Ammonification Bordetella parapertussis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 7.511572373 7.403665829 7.675941613 8.017470691 7.132552502 8.287092148 7.24558048 7.329404162 7.495935436 261857093 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.59725557 8.428020477 8.056207421 8.130924671 8.083455178 7.990254119 8.066753093 8.500638885 8.185489015 8.218188835 8.180360531 254560363 ureC Nitrogen Ammonification Methylobacterium extorquens DM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 8.220974441 8.397490388 8.118389298 7.411802962 7.539291406 7.209686843 7.894836776 159792732 nhh Organic Remediation Aromatics Nitoaromatics Rhodococcus erythropolis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7.379725727 7.684656348 7.654683147 7.279359524 7.420039727 7.648328154 7.66658958 7.439403941 227349377 srt virulence surface protein Corynebacterium pseudogenitalium ATCC 33035 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium pseudogenitalium; 7.12988214 7.115630341 7.286333633 7.188398572 7.607956224 7.024366261 7.107751832 7.515691066 121605628 proO Organic Remediation Aromatics Other aromatics Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8.173508439 8.254715288 7.721502062 7.845203987 8.202693243 8.339495258 7.695799834 7.989033024 8.081173341 8.098000943 159896696 sigma_24 Stress Sigma factors Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 7.874907245 8.17956412 7.535887625 7.642855332 8.127343582 8.064238888 7.445567051 8.174296374 7.709123582 7.738117029 8.005042189 23978267 gyrB other category gyrB Nodularia sp. PCC 73104 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nodularia;species:Nodularia spumigena; 8.080234721 8.114549318 6.948673702 7.05662192 7.137579641 7.131059845 7.39283662 116495049 hrcA Stress Heat shock Lactobacillus casei ATCC 334 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus casei; 7.73388895 7.938369217 7.837523346 7.60744744 7.473308763 7.559284848 7.657781613 7.558028343 7.588324679 7.406081126 7.177447257 56677728 pcc Carbon cycling Carbon fixation Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 8.041473937 8.396057393 8.032875888 7.778837023 7.717214342 7.842101071 7.662143282 8.015090508 7.805385929 7.742646305 150258201 tutFDG Organic Remediation Aromatics BTEX and related aromatics Victivallis vadensis ATCC BAA-548 superkingdom:Bacteria;phylum:Lentisphaerae;family:Victivallaceae;genus:Victivallis;species:Victivallis vadensis; 8.023725551 8.337480009 7.937022251 7.689030427 7.550621914 7.859188722 8.140392767 8.24519041 7.964426655 7.881011001 8.082922991 227400024 AceA Carbon cycling Carbon degradation others Gordonia bronchialis DSM 43247 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 8.274797451 8.531943956 8.189455317 8.365668575 8.365127836 8.293615558 8.649708236 8.204741638 8.524173917 8.467994114 8.297637819 216996 B_lactamase_A Antibiotic resistance Beta-lactamases Streptomyces cacaoi superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.365302254 8.731987431 7.916346295 7.846606929 8.000231434 8.201386792 7.821007454 8.201636812 7.905354961 7.46918558 8.024875374 161503298 TehB Metal Resistance Tellurium "Salmonella enterica subsp. arizonae serovar 62:z4,z23:--" superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 8.045900159 8.125825244 7.098112635 7.186668788 7.39049527 7.045752779 7.564121362 7.284633236 7.053892023 7.459881843 89343155 ureC Nitrogen Ammonification Mycobacterium flavescens PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.161974606 8.147259596 8.091386226 8.061852471 8.215476532 7.794237657 8.26371831 8.287921468 8.359184937 84392777 pimF Organic Remediation Aromatics Aromatic carboxylic acid Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 7.919995736 8.090246713 7.856591505 7.692653971 8.044881693 8.314712141 8.250589764 8.269068996 8.003763048 51491426 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.451307365 7.760307754 37542706 gyrB other category gyrB Mycobacterium scrofulaceum superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.088328313 7.591398221 7.926840245 8.245626404 7.484542911 8.38574941 7.523595494 7.712036354 8.075227668 103488057 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Sphingopyxis alaskensis RB2256 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 8.158359448 8.737601645 8.223978817 8.42452245 8.424214944 8.273085088 8.664529902 8.512911354 8.646282657 8.59814123 8.326001114 90197983 pcc Carbon cycling Carbon fixation Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.740006982 8.365518898 7.443233508 7.722914142 7.835244065 8.25901986 7.415097047 8.193804398 7.891912861 7.949214896 8.068934413 7960269 xylanase Carbon cycling Carbon degradation Hemicellulose Penicillium purpurogenum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 7.292089072 7.212390285 7.126276739 121554380 pheA Organic Remediation Aromatics Other aromatics Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 8.824822861 8.777458555 8.833433956 8.267286093 8.898042518 7.762657312 8.559809168 8.802150277 8.826572877 121552677 hrcA Stress Heat shock Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 8.118727232 8.205078138 8.239509809 8.03553518 7.696117355 7.898123037 8.313376453 8.206614701 7.983668477 7.629803323 8.363714932 113726489 ChrA Metal Resistance Chromium Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 8.396530204 8.197220884 7.757763201 8.364696786 7.805782907 8.068357764 7.929949325 7.924721662 148259865 glycosyl_transferase_EPS Bioleaching EPS Acidiphilium cryptum JF-5 7.955816395 7.769840035 7.982598452 7.606307571 7.44461197 7.559261897 7.144381008 226225880 sigma_24 Stress Sigma factors Gemmatimonas aurantiaca T-27 superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 7.870649773 7.789314623 7.664779423 7.649455758 7.425520687 7.919798552 7.670998827 7.730018867 7.775569093 49611352 napA Nitrogen Dissimilatory N reduction Erwinia carotovora subsp. atroseptica SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 7.832273788 7.663032489 7.503971561 7.693712119 7.981361862 7.904938381 7.949514028 7.922999409 8.195692411 167349125 tfdA Organic Remediation Aromatics Chlorinated aromatics Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.794941645 8.361102506 9.21276999 8.970363658 9.099659574 8.602103414 9.326479894 8.481315047 9.048948702 9.200139261 8.90863455 160871558 gyrB other category gyrB Rickettsiella grylli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Coxiellaceae;genus:Rickettsiella; 7.977361942 8.153107801 7.757149435 7.623198365 8.062710871 7.661209472 8.014344569 187921807 nhh Organic Remediation Aromatics Nitoaromatics Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.914471384 8.022135194 7.695090719 7.546460461 7.780889664 7.975681034 7.769649459 7.592768042 7.561503575 46093349 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 8.154259297 8.560842243 7.697977986 8.001397811 7.720872457 7.339405981 7.464507687 7.894651893 7.784097637 7.762418272 7.865531263 67087845 nmoA Organic Remediation Aromatics Nitoaromatics Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 8.488760405 8.3746073 8.352288136 8.109968059 8.567607216 8.333226398 8.620206647 8.459889908 8.017489856 269789532 sigma_24 Stress Sigma factors Thermobaculum terrenum ATCC BAA-798 superkingdom:Bacteria;genus:Thermobaculum;species:Thermobaculum terrenum; 7.858052685 7.888452321 7.919522256 7.234043363 7.699659292 7.766379864 7.785689838 7.638481796 15212230 ara Carbon cycling Carbon degradation Hemicellulose Cellvibrio japonicus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio; 8.218563743 8.088599216 7.561028193 7.723105898 8.109807375 7.792974478 8.212820538 8.14422803 8.001857089 8.129676692 7.802113089 73671381 CDD Organic Remediation Aromatics Other aromatics Rhodococcus erythropolis 8.256533549 8.447048391 8.298693908 8.589604445 8.633198769 8.194459782 8.814114128 8.077549928 8.696690508 8.789741373 8.460351943 146283930 CopA Metal Resistance Copper Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 8.013216534 7.884756891 7.990645186 7.612137677 7.942244946 8.133910629 8.035019672 8.179404576 7.665701035 33577317 iro virulence Bordetella bronchiseptica RB50 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella bronchiseptica; 8.374968586 8.089118288 7.760071418 8.497977546 8.420805499 8.596326322 8.102749777 8.463031392 7.955753993 7.744079203 8.099358813 66271236 gyrB other category gyrB Vibrio diazotrophicus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 9.071030134 9.303387969 8.717599162 8.312652989 8.283285745 8.176768899 8.300500639 8.337085236 149359017 pilin virulence pilin Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 8.363034587 8.39888417 8.405938389 8.337393616 8.219441655 8.284480593 8.532989057 8.324441469 8.598179281 8.049209012 8.214121439 86747581 sigma_32 Stress Sigma factors Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.782508939 7.994009647 7.16417296 7.270745748 6.901293856 7.491120863 227238515 amyA Carbon cycling Carbon degradation Starch Mobiluncus curtisii ATCC 43063 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus curtisii; 8.664606561 8.464191222 8.229972941 8.282381257 8.021336001 7.897854668 8.298694232 8.289059654 8.106231764 8.135564035 8.382467318 87201211 TerC Metal Resistance Tellurium Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 7.594316949 7.978524585 8.348276368 8.179506173 8.348542266 8.304560032 8.431795994 8.316188284 8.340766417 126705457 ureC Nitrogen Ammonification Rhodobacterales bacterium HTCC2150 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.714434983 7.559329753 7.193241497 7.75118832 7.505266742 7.423367712 7.474433013 264680148 sigma_24 Stress Sigma factors Comamonas testosteroni CNB-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.062052688 7.84564346 7.737556121 7.815570556 7.875694302 7.946034982 7.775414791 7.737064036 7.724687208 119410369 endoglucanase Carbon cycling Carbon degradation Cellulose Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 8.610981579 8.648441603 8.585976897 8.677223827 8.452398447 8.727175458 9.112668634 8.778357538 8.9238073 8.25459068 8.778229847 91191048 TehB Metal Resistance Tellurium Vibrio alginolyticus 12G01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 7.828981847 8.011752375 7.238475615 7.123979204 7.465193928 7.449762195 7.015002176 7.833156241 6.996356885 7.08709798 7.437944687 73534131 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.484242675 7.730689419 7.762041409 7.448832123 7.470697901 7.661656389 7.559294775 7.370535313 7.626808078 145222256 pstB Stress Phosphate limitation Mycobacterium gilvum PYR-GCK 8.1417587 8.291473856 7.801369816 7.962407961 8.202144387 8.366892685 7.246562411 8.206678903 7.160804052 7.263068027 7.746588778 238577094 AceB Carbon cycling Carbon degradation others Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 7.435723077 7.658822757 7.43001861 7.352666114 7.387189695 7.632087897 7.793487346 7.849249808 7.820110225 116742440 cda Carbon cycling Carbon degradation Starch Listeria welshimeri serovar 6b str. SLCC5334 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria welshimeri; 8.37190267 8.544183591 7.840971731 7.466373033 7.752407311 7.472582677 7.092284256 8.118609567 7.58265615 7.386317283 7.783294155 209501632 mhpB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.734006572 7.674570127 7.802151837 8.057119691 7.863230618 7.544107602 7.844683753 197717552 AceB Carbon cycling Carbon degradation others Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 8.225868941 8.344740237 7.933441372 8.268168813 8.224145581 8.216509619 8.230283983 7.872297482 8.127980232 8.189114246 240103756 pstB Stress Phosphate limitation Thermococcus gammatolerans EJ3 7.872232263 8.066861823 7.347593781 7.227314817 7.465272745 7.314639433 6.861738874 7.705836415 6.935055216 7.048097414 7.265153326 169266 lip Carbon cycling Carbon degradation Lignin Phanerochaete chrysosporium 8.179938009 8.407399746 7.64993152 8.287570858 8.084032438 7.498637183 7.870961818 7.829619476 7.911657437 8.009419734 7.723116898 146311834 pimF Organic Remediation Aromatics Aromatic carboxylic acid Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 7.331439622 7.199126525 7.185439354 6.784728271 7.282071376 7.444063562 7.18121417 7.154295087 7.467425875 227951453 sox Sulphur Sulphur oxidation Meiothermus silvanus DSM 9946 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 8.12822291 8.065216823 7.242824693 7.57541896 7.482180432 7.378314973 7.746956457 7.364390464 7.129869576 7.609409403 89342313 linB Organic Remediation Pesticides related compound Mycobacterium flavescens PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.168129847 8.171755955 8.600080974 8.513613563 8.511949358 7.848709741 8.723083535 8.362451365 8.386023624 8.471452332 8.223642626 183227016 pstB Stress Phosphate limitation Lactobacillus fermentum IFO 3956 8.054506399 8.094558662 8.027676831 7.578831058 7.720391791 7.594571138 7.857828876 7.762014377 7.506068816 7.286329349 7.688565065 15625037 sox Sulphur Sulphur oxidation Rhodovulum sulfidophilum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodovulum; 8.213706702 8.415492534 8.521751744 8.497003108 8.859335462 8.983029556 8.77807868 8.699592869 189499815 grpE Stress Heat shock Chlorobium phaeobacteroides BS1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 7.964735211 8.045739061 7.295544043 7.230130267 7.324061661 7.595876684 6.940425756 7.656324111 7.36175316 7.441946995 219849739 ChrA Metal Resistance Chromium Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 7.740817119 7.425670571 7.353406859 6.977969374 7.598752023 7.68207789 7.745373802 7.721055698 7.841827257 67158162 bphA Organic Remediation Aromatics Polycyclic aromatics Azotobacter vinelandii AvOP 9.192491636 9.216703216 9.450792175 9.673250229 9.170180816 9.79579335 9.187452954 9.145415887 9.2938603 46917296 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.340965356 8.532561541 8.313217185 7.838814815 7.912034668 7.438921085 7.235706194 7.717969645 8.11141321 8.304036058 221737482 nmoA Organic Remediation Aromatics Nitoaromatics Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 7.837845322 8.103649776 7.998941797 7.153713174 8.188631187 7.561448913 8.079445765 7.93098166 7.995715634 78093568 narG Nitrogen Denitrification uncultured bacterium 8.449376623 8.239520449 7.217860424 7.934034559 7.856330454 8.013972564 7.957432633 7.695733046 7.966291966 7.785509224 221155903 obgE Stress Radiation stress Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 8.681981351 8.460260497 8.430646927 8.540140986 8.396195505 8.283182777 8.799766593 8.25591845 8.584806343 8.741860606 8.467683457 70734356 iro virulence Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.284291984 7.335929593 149360104 AmiE Organic Remediation Aromatics Other aromatics Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 7.750267003 7.830768946 7.951184623 8.023336022 7.762372038 8.400920902 7.827983611 7.70020337 7.332811919 23007456 hrcA Stress Heat shock Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 8.022795459 8.069188668 7.668673694 7.691850495 7.601849375 7.296138946 7.723522502 7.702808438 7.655331317 7.345972603 7.580053777 6460025 TerZ Metal Resistance Tellurium Deinococcus radiodurans R1 7.698225428 7.751342469 7.665033146 7.729936197 7.565929976 8.11632465 7.629960049 7.503137633 224367368 pstB Stress Phosphate limitation Desulfobacterium autotrophicum HRM2 8.597710748 8.675826459 8.245243426 8.073738564 7.969162578 8.087546662 7.955866793 8.313145661 8.161460132 8.080178249 8.465135175 118715664 cbdA Organic Remediation Aromatics Chlorinated aromatics Burkholderia multivorans ATCC 17616 7.97756339 8.059195937 8.198880539 7.948908058 8.36610475 8.141242416 8.256176864 8.379572405 8.518307266 198256713 mannanase Carbon cycling Carbon degradation Hemicellulose Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 9.075045165 9.15787649 8.184234563 8.243974068 8.134169258 7.810135174 7.903153173 7.999280605 8.276083377 163743279 ppx Phosphorus Phosphorus utilization Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 8.199697237 8.182877104 8.287292261 8.263168916 8.071002554 7.755707657 8.122089785 8.47730355 8.141673034 7.922547803 7.669938906 169117847 mer Metal Resistance Mercury uncultured organism 7.825621913 8.084086455 8.095769742 8.070599453 8.185187157 8.400565887 8.141277501 8.014226046 8.121906249 257170145 pstB Stress Phosphate limitation Halomicrobium mukohataei DSM 12286 9.447195738 9.476291251 9.413383586 206679217 xylA Carbon cycling Carbon degradation Hemicellulose Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.554193515 8.187028716 7.611698398 8.438371606 8.260209278 8.366746406 8.616726751 8.081776151 8.149621099 8.042489728 123442622 SMR_antibiotics Antibiotic resistance transporter Yersinia enterocolitica subsp. enterocolitica 8081 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 8.424573844 8.258878826 8.118045516 7.982576838 8.016165338 7.180166083 7.730159252 7.717809188 7.989027415 157375353 CopA Metal Resistance Copper Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 7.067554226 7.718838149 8.01662675 7.996113503 7.892709957 8.221119961 8.003288276 8.153757314 7.944143972 154155928 CopA Metal Resistance Copper Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 7.368550185 7.473495378 7.746510132 7.467554566 7.088998367 7.888894559 7.323122822 7.200579559 7.765815578 78516483 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.266775328 8.070891589 8.07637255 8.105848727 7.911866711 7.94061616 8.007021606 8.204954568 8.140874848 7.996536251 7.714023043 17134324 mer Metal Resistance Mercury Nostoc sp. PCC 7120 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc; 8.191811955 8.17895496 8.593952836 7.871376362 8.539349105 8.329337994 8.642633246 7.683755666 210627089 ppk Phosphorus Phosphorus utilization Collinsella intestinalis DSM 13280 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella intestinalis; 8.541520882 8.375834047 8.089687533 8.828242804 8.203902078 8.561173006 8.162072268 8.454396568 8.24977125 8.244455371 8.175193044 195970146 glnA Stress Nitrogen limitation Sinorhizobium meliloti 1021 7.800891916 7.779903672 7.310169886 7.503073724 7.742917198 7.754883616 8.013241689 7.71548024 7.649923717 33863332 clpC Stress Protein stress Prochlorococcus marinus str. MIT 9313 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 7.826154046 8.10235814 7.155876933 7.351634182 7.405383013 6.692372112 7.458043037 197712686 pcpB Organic Remediation Herbicides related compound Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 7.737139205 8.250292542 8.305149365 8.310153714 8.091901251 8.517026255 8.188528989 7.810423747 8.027830403 198039166 nagG Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia cenocepacia J2315 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 7.53952018 7.748154787 7.931854677 7.825888866 7.696203318 8.000288563 7.738349269 7.889200702 7.839844455 17934799 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.676615264 7.452998618 7.922375024 7.741085547 7.959142664 8.043430443 7.985292222 7.872872359 8.091228954 118171327 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.192926049 8.35993671 8.360410811 8.126948332 8.451426221 8.39813863 8.335072162 8.207369467 7.84717387 188580310 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 7.754926469 7.66998944 7.999705263 7.90581847 7.754508129 8.029387853 7.99839629 7.889313282 7.958874609 214029666 ahpC Stress Oxygen stress Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8.289903306 8.574724527 8.381321828 8.181145356 8.613878726 8.490455109 8.486310447 8.285319457 179347936 pstA Stress Phosphate limitation Methylobacterium populi BJ001 7.690851175 7.713196947 7.601154731 7.594457503 7.742773685 8.003614042 7.970455145 7.765589421 7.666706842 116613035 CadA Metal Resistance Cadmium Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8.323593931 8.19004251 7.423229342 7.765889673 7.710964227 7.914799772 7.960345823 7.997971825 7.525230317 7.706229591 67853922 ppx Phosphorus Phosphorus utilization Crocosphaera watsonii WH 8501 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Crocosphaera;species:Crocosphaera watsonii; 7.783888455 8.014470086 7.275580853 7.179474894 7.23321027 7.018116393 6.738651127 7.763472952 7.113805496 7.313952627 223894062 sigma_24 Stress Sigma factors bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 8.387235842 8.230569973 8.021904818 8.047990743 8.206411245 8.326959587 8.02720504 7.871239199 7.754122415 16126643 4HBH Organic Remediation Aromatics BTEX and related aromatics Caulobacter crescentus CB15 8.711214676 8.798014401 8.298919137 8.353675093 8.238692395 8.708589352 29466008 norB Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.89488832 8.340850392 8.402121927 8.588465847 7.936842427 8.741039227 8.09198104 7.863041711 8.038280174 253998513 iro virulence Methylovorus sp. SIP3-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylovorus; 8.443531573 8.563161281 8.376048235 8.470465239 8.33678279 8.227718015 8.414478101 8.330731749 8.301849316 8.353127808 8.321328211 256719814 endochitinase Carbon cycling Carbon degradation Chitin Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 8.385943301 8.277638945 8.278939447 8.252500901 8.666697145 8.183963777 8.680396696 8.668128152 8.700615324 23867901 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 7.859476003 7.926721469 8.120088072 7.632183755 8.169451474 7.770600521 8.117983177 8.127793019 8.058364199 121699822 tfdA Organic Remediation Aromatics Chlorinated aromatics Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7.627547517 7.388438629 7.906737855 89143212 gyrB other category gyrB Microbacterium schleiferi superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium; 7.939002052 8.160042257 7.304093441 7.269134053 7.564469104 8.002241098 6.99731475 7.922228314 6.786987959 7.374853099 60593164 dsrB Sulphur sulfite reductase uncultured prokaryote 7.22258995 7.136823822 7.43738021 7.019723663 7.364880754 7.644999429 218750952 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.517353497 8.35393195 8.346786429 8.113914248 8.395655445 8.415347309 8.452802299 7.857118882 260087758 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 7.806071257 7.21849137 7.758158634 8.139772284 7.866644551 7.863008493 7.793061992 7.749906822 222109650 narI Stress Oxygen limitation Diaphorobacter sp. TPSY superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax ebreus; 7.727506047 7.942402567 7.734069433 7.764899609 8.064313292 8.113061436 8.020696091 7.905886131 8.068194098 117999213 pcc Carbon cycling Carbon fixation Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.359146142 7.389704182 7.431509134 7.007138753 6.936149111 7.485210842 7.232948342 7.428493911 7.189947033 77799787 benAB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia gladioli superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.852285431 7.862488774 8.414556572 8.202574984 7.714967989 8.561899864 7.842704457 7.708530612 7.741768886 195364412 bphA Organic Remediation Aromatics Polycyclic aromatics Sphingobium yanoikuyae 8.314028254 8.22386996 7.952775258 7.644310229 7.650486994 7.760392165 7.810900644 8.180649209 7.846220556 7.772766425 7.789033056 114332002 fnr Stress Oxygen stress Nitrosomonas eutropha C91 8.019785258 8.315643389 8.331499493 8.68979774 8.526067047 8.385387718 8.746052145 8.602725723 8.582245689 82717199 AmiE Organic Remediation Aromatics Other aromatics Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.063048977 7.894285325 7.50412019 7.717134794 7.665711238 7.819624702 7.849728947 7.829766357 7.370359304 146294428 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Shewanella putrefaciens CN-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella putrefaciens; 8.50793937 8.316033522 8.059119292 8.068988951 8.309052441 8.507573659 8.355062873 8.635866275 8.139293997 7.878944626 8.165041086 260893787 fnr Stress Oxygen stress Ammonifex degensii KC4 8.457585839 8.511164144 7.734110286 7.743623892 7.876507256 7.609423778 7.110966453 7.836994311 7.66262184 7.490471947 7.850010558 90414596 pstB Stress Phosphate limitation Photobacterium profundum 3TCK 7.124591055 7.171541073 6.830889528 261337613 fnr Stress Oxygen stress Bifidobacterium gallicum DSM 20093 8.657667529 8.516841299 7.854124429 8.077407529 8.386886991 8.002917955 8.185989723 8.411897284 8.223490759 8.51554085 8.329391031 78171531 CopA Metal Resistance Copper Chlorobium chlorochromatii CaD3 8.451983492 8.39308255 8.205117096 8.496086421 8.029136941 8.340507233 8.245780234 170135095 tfdB Organic Remediation Aromatics Chlorinated aromatics Burkholderia ambifaria IOP40-10 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 7.693066093 7.846232277 7.99770151 8.266792036 7.70194087 8.330813938 8.098539803 8.021123905 8.108734176 118472363 hrcA Stress Heat shock Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 7.905421788 7.929637131 8.184472179 8.464691598 7.951398847 8.42048637 8.238653811 8.375975554 8.238393245 87281179 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.891617856 8.219982636 7.98922701 8.142936774 8.080530232 7.979222193 7.89167038 8.031075099 117610402 sigma_24 Stress Sigma factors Magnetococcus sp. MC-1 superkingdom:Bacteria;phylum:Proteobacteria;genus:Magnetococcus; 7.509576001 7.884483838 8.03103379 7.855029421 8.256372811 7.693894552 7.790027561 7.93514709 262259756 iro virulence Acinetobacter calcoaceticus RUH2202 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter calcoaceticus; 7.50533241 7.242942332 113869328 trzN Organic Remediation Herbicides related compound Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.414771341 8.15345331 8.381470986 9.229083049 8.427964178 8.784251205 8.876372297 8.662903241 152028283 sigma_32 Stress Sigma factors Anaeromyxobacter sp. Fw109-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 8.388110283 8.323549086 8.098494818 8.296932523 8.69037041 8.421563611 8.691623649 8.548474045 8.507773374 56696593 ureC Nitrogen Ammonification Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 7.408896558 7.384651393 7.267068784 7.355228918 219679590 pimF Organic Remediation Aromatics Aromatic carboxylic acid gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.304971809 8.209071452 7.859242671 7.532710324 7.691896434 7.512307606 7.193733447 8.157752674 7.654185415 7.301105004 7.48036787 145214601 hly virulence hemolysin Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.08381579 8.590286958 8.267642318 8.328382395 8.272499063 8.210099548 8.543771067 8.301196744 8.217180474 8.037791297 8.259141665 198266514 bphF1 Organic Remediation Aromatics Polycyclic aromatics Octadecabacter antarcticus 238 7.6998388 7.576212707 7.166277504 7.254675416 7.584037933 7.681721601 7.555387063 7.322505152 7.312177522 71383866 nasA Nitrogen Assimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.931092293 7.923285279 7.797468649 7.970581279 8.575616241 8.210357345 7.998104375 8.069193804 112801687 CopA Metal Resistance Copper Campylobacter concisus 13826 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter concisus; 7.241876415 7.330830457 7.390644457 7.096130446 7.725328296 7.302671424 7.351891797 7.274827207 68164686 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.557590467 9.043881746 8.574146521 8.778640043 8.800034374 8.096913335 163794540 merB Metal Resistance Mercury alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 8.210397035 8.460688311 7.383740037 7.948456752 7.917704811 7.918856327 7.275373706 8.147791914 7.427405339 7.482706934 7.406010862 46912351 pstB Stress Phosphate limitation Photobacterium profundum SS9 7.124415264 7.029095515 7.256196831 7.529039928 6.589689336 209517111 catB Organic Remediation Aromatics BTEX and related aromatics Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.069815551 8.334503634 8.11272414 7.940432547 7.735019144 7.828186608 8.553963772 8.216865458 8.325425653 8.105022018 8.518099379 258633052 narI Stress Oxygen limitation Dickeya dadantii Ech586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 7.922398438 8.258301857 7.269525675 7.433890386 7.416738754 6.638565649 7.979532641 209486343 mcrA Carbon cycling Methane Methane production uncultured archaeon superkingdom:Archaea; 7.833061138 7.84787574 7.576438493 7.602072396 7.424563583 7.974479298 7.678975666 7.52699892 7.662471453 15076646 merP Metal Resistance Mercury Bacillus cereus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 8.625037492 8.628891628 8.168294745 8.072475947 7.904827727 7.885005664 8.056817342 8.136833906 8.07535822 8.054171293 8.254048455 91201217 SMR_antibiotics Antibiotic resistance transporter Candidatus Kuenenia stuttgartiensis superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;genus:Candidatus Kuenenia; 7.423924382 7.411999438 7.694965032 7.763152417 7.542359994 7.985422514 7.733893136 7.616166417 7.761435894 39997308 cytochrome Energy process Energy process Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 7.29464454 7.588106762 7.869830253 7.569032941 7.00934757 8.011100631 7.585315945 7.573863061 7.629077857 70998999 phoA Stress Phosphate limitation Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 8.506683817 8.372016467 8.527193305 8.171467183 7.501031489 8.360284008 8.447492802 8.393109187 8.353077301 8.291238045 7.863914937 78358095 tutFDG Organic Remediation Aromatics BTEX and related aromatics Desulfovibrio desulfuricans G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 7.645454969 7.651863193 7.546750019 7.493778905 8.074297075 7.654635411 7.979016537 116695481 fnr Stress Oxygen stress Ralstonia eutropha H16 8.246583112 8.198581713 8.030012609 8.166461829 8.609066659 8.222423333 8.359101648 8.363654801 8.383436373 157846864 AceB Carbon cycling Carbon degradation others Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 7.116421927 7.374156433 7.29087463 7.375858104 6.85264132 7.753521502 7.007309826 7.052843577 7.218096821 116620358 sigma_24 Stress Sigma factors Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 8.463737592 8.257817719 8.333449319 8.214013592 8.21432326 8.059200543 8.421836675 68510360 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.199530171 8.523159088 7.607951125 7.390244651 7.64054452 7.393104555 7.222585198 7.42187921 68008961 amyA Carbon cycling Carbon degradation Starch Exiguobacterium sibiricum 255-15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 7.164483675 7.156017292 7.139993664 6.878598109 7.370974178 27377845 sox Sulphur Sulphur oxidation Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.301046094 8.324441326 8.017297091 7.984413011 8.212281112 8.139131947 8.487661163 8.154090498 8.262355754 8.184369635 218250200 CadA Metal Resistance Cadmium Mitsuokella multacida DSM 20544 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Mitsuokella;species:Mitsuokella multacida; 7.788729821 8.32349059 8.249408078 8.176649888 7.760742853 7.533575725 8.223491162 7.865637988 8.044380835 7.596110835 7.960672201 37954312 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.321508889 8.115179731 8.098166154 7.36394029 8.129333755 7.905248529 7.896098844 8.206455968 7.499895621 124110957 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 8.274237656 8.05773507 7.715352316 7.553909286 7.710527598 7.998822646 7.615938688 8.294340978 7.372710008 7.348417533 7.395600825 219951892 amyA Carbon cycling Carbon degradation Starch Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 8.18547015 8.221200596 7.50882848 8.161968243 8.282811793 8.36872349 8.12179511 8.11812527 8.240345893 8.287260376 106764018 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Psychromonas ingrahamii 37 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas;species:Psychromonas ingrahamii; 7.900497312 7.917731633 7.613083288 7.4059323 7.354122594 7.654047686 7.652919439 7.522652754 8.122970879 184194386 nmoA Organic Remediation Aromatics Nitoaromatics Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.256394648 8.554091519 8.107397591 7.799792648 8.3489853 8.108525729 8.046914506 8.149793883 218245881 pstB Stress Phosphate limitation Cyanothece sp. PCC 8801 8.153909601 8.136359932 7.673649507 7.885147551 7.635296621 7.665719557 7.736001883 8.03307272 8.056801932 7.925835869 257453448 obgE Stress Radiation stress Enhydrobacter aerosaccus SK60 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Enhydrobacter;species:Enhydrobacter aerosaccus; 7.212488475 7.34899951 7.110323841 6.638555071 7.532286931 223937277 sigma_24 Stress Sigma factors bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 8.089531447 8.141141506 8.06619306 8.105165753 8.371491509 7.929518342 8.406943042 8.097024498 8.583234993 8.627650207 8.567959641 90196508 alkB Organic Remediation Other Hydrocarbons Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 7.738708572 7.898126983 7.57685454 7.911242747 8.021915029 8.090435181 7.882608805 7.914367563 7.894762825 163662912 fnr Stress Oxygen stress Methylobacterium extorquens PA1 8.18817784 8.59851903 7.442063014 7.719584821 7.82769515 8.266942828 7.674890574 7.654936308 7.858893989 7.445297965 148868399 pimF Organic Remediation Aromatics Aromatic carboxylic acid Vibrio harveyi HY01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 7.895788943 8.120503763 7.275489182 7.177323803 7.000212408 6.713836669 7.464666649 6.870466347 7.061688911 145564192 pimF Organic Remediation Aromatics Aromatic carboxylic acid Shewanella putrefaciens CN-32 7.632740256 7.278018916 7.674715179 7.638209241 6.912670557 8.279511023 111282689 nagI Organic Remediation Aromatics Aromatic carboxylic acid Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 8.126087198 7.94189493 7.857559368 7.871147301 7.851950724 7.936909043 8.294852203 8.173501411 8.409009652 8.257002463 119773960 sigma_70 Stress Sigma factors Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 8.120878728 8.410126689 8.325010728 8.294511834 8.238586442 8.336324401 8.100641831 8.361946099 7.840510191 2649607 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Archaeoglobus fulgidus DSM 4304 superkingdom:Archaea;phylum:Euryarchaeota;class:Archaeoglobi;order:Archaeoglobales;family:Archaeoglobaceae;genus:Archaeoglobus;species:Archaeoglobus fulgidus; 7.309878716 7.052345971 35210325 gyrB other category gyrB Alicyclobacillus pomorum superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus; 7.848990738 8.483769843 7.374823353 7.210964012 7.328264837 6.902480951 6.775420688 7.411315933 7.236839611 6.870639184 7.347384922 157964042 pstB Stress Phosphate limitation Shewanella pealeana ATCC 700345 7.452540845 7.58611697 7.430186398 7.668759665 7.686724829 7.735802714 7.440547108 7.906994286 260609337 glnA Stress Nitrogen limitation Vibrio coralliilyticus ATCC BAA-450 7.227295282 7.224133004 118592832 fnr Stress Oxygen stress Stappia aggregata IAM 12614 8.430494864 8.365040049 8.151965567 7.918226955 7.889758817 7.850184066 7.803737752 7.654431872 170116755 phenol_oxidase Carbon cycling Carbon degradation Lignin Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 8.514993024 8.352327583 7.770167434 7.918184228 7.866567714 7.488629168 7.228630999 7.830065287 7.598038149 7.882663189 149360190 Catechol Organic Remediation Aromatics Other aromatics Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 7.223631096 7.899447917 6.983853305 7.082251719 7.642453565 7.19304471 7.294763135 391833 cumA Organic Remediation Aromatics Other aromatics Pseudomonas sp. KKS102 8.090013197 8.301973988 7.921392224 7.826762377 7.784082003 7.663015914 8.03704577 7.925983128 7.922316741 8.083817227 7.927762986 110835544 pstA Stress Phosphate limitation Alcanivorax borkumensis SK2 7.89846273 8.204434201 7.87722351 8.032533433 7.899496414 8.092101591 8.321225521 8.247027272 7.732214907 218892504 SMR_antibiotics Antibiotic resistance transporter Pseudomonas aeruginosa LESB58 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.234294223 7.833825521 7.870025413 7.446690248 8.061618154 8.087099785 7.820440699 7.977795417 7.72245928 170605554 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.800605374 7.959838828 7.856713158 7.714586973 7.922114845 7.579314307 8.009507384 7.657982926 7.316055378 113969793 iro virulence Shewanella sp. MR-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 7.570374107 7.862809188 7.395931818 7.213269366 7.363122683 7.673182979 7.086142251 7.044872241 7.249082882 73763130 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.610485834 7.637354835 7.899493374 7.500975194 7.305830264 7.987295775 7.444686335 7.293977018 7.568056314 126736260 pstB Stress Phosphate limitation Roseobacter sp. CCS2 8.448103203 8.342493029 7.77281234 8.498558764 8.429828603 8.435286477 8.727396485 8.321435559 8.781927863 8.515213136 8.532807792 169760723 cytochrome Energy process Energy process Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.630313008 8.331826294 7.902373202 8.057989915 8.412370003 8.871174094 8.378402531 8.207542268 8.410837883 8.473393479 169807131 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 8.009334688 8.054936188 7.159142794 7.053718408 7.726221959 7.756929147 7.16683204 7.165087166 7.326238871 5824147 alkJ Organic Remediation Other Hydrocarbons Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.249476243 8.255787237 7.897245261 7.793532541 7.831581031 7.831960294 7.631137761 8.044816666 7.828121238 8.001326458 7.845156341 37196937 gyrB other category gyrB Vibrio vulnificus YJ016 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 8.12904998 8.359191378 7.023235074 7.51160939 7.397314615 7.578160463 8.019386273 7.411380317 7.778598158 287907 nirK Nitrogen Denitrification Pseudomonas chlororaphis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas chlororaphis; 7.709659448 8.116901235 8.117057766 8.28304584 7.972688005 8.140367848 7.556863564 7.788677501 7.695622474 171058336 phoB Stress Phosphate limitation Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 8.447067328 8.045025031 7.51783861 8.025700182 7.715851488 8.013897879 7.895090463 7.622266703 7.811010088 7.841041745 221738038 NirB Nitrogen Assimilatory N reduction Agrobacterium vitis S4 7.065267104 7.022345932 7.127556156 7.235936545 7.316486458 269987718 B_lactamase_C Antibiotic resistance Beta-lactamases Legionella longbeachae D-4968 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella;species:Legionella longbeachae; 7.503411118 7.586786984 7.740147235 7.419782695 7.485851386 7.513288271 283474840 pilin virulence pilin Xanthomonas albilineans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas; 8.178952976 8.211549382 8.124257147 8.028908623 8.054272882 7.508144813 8.241077839 7.988998742 8.136185839 8.107720143 7.865115513 54017000 Catechol Organic Remediation Aromatics Other aromatics Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 8.079691198 7.992773752 8.062298015 7.640004183 8.213303176 7.991232099 7.936669121 7.643709926 8.225292102 3282062 aa3_type_cytochrome_oxidase Bioleaching Electron transport Acidithiobacillus ferrooxidans 7.303344358 7.583942865 7.738848239 7.826144836 7.816829396 7.561497008 7.59967646 7.878046454 151939758 B_lactamase_C Antibiotic resistance Beta-lactamases Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.430168474 7.40376631 7.123685618 219995456 hrcA Stress Heat shock Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 7.654484445 7.816870674 7.771106014 7.849243253 7.680891103 8.020437663 7.744074382 7.694144484 3165372 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 9.202246539 9.246362452 8.575428358 8.580396325 8.523000845 8.393097439 8.160033274 8.772536886 8.343093378 7.976565803 8.617004607 119535741 catB Organic Remediation Aromatics BTEX and related aromatics Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 7.427179504 7.756584538 7.629593057 7.742332821 7.439588584 8.220640864 7.601937714 7.668000374 7.693516758 21111345 Catechol Organic Remediation Aromatics Other aromatics Xanthomonas campestris pv. campestris str. ATCC 33913 7.823762273 7.50086574 8.209009936 8.443937027 7.903203477 8.413807456 7.698022327 7.834199429 8.104790074 152996689 nagK Organic Remediation Aromatics Aromatic carboxylic acid Marinomonas sp. MWYL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 7.854878205 8.050157417 7.342020183 7.100659418 6.85820155 7.446904217 6.880495126 7.142416517 7.338367474 89512978 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.056329129 7.985180339 7.479903587 7.473633154 7.509096488 7.389394462 7.580302036 7.794619662 7.623973013 7.464504271 7.546839349 163262656 czcC Metal Resistance "Cadmium,Cobalt,Zinc" Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 8.331418746 8.521328727 7.831149574 7.90271532 7.870391104 7.437545522 7.476596118 8.023653865 256686825 pstA Stress Phosphate limitation Jonesia denitrificans DSM 20603 7.997180132 8.280601052 7.935868827 8.156771424 8.081253393 8.046366647 8.076460717 8.068432549 8.314536089 8.083843828 7.615377626 85831496 CadA Metal Resistance Cadmium Leeuwenhoekiella blandensis MED217 7.248938799 7.562676332 7.287635751 7.22477967 7.044235099 7.11765707 7.231519288 94970876 sigma_24 Stress Sigma factors Candidatus Koribacter versatilis Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 8.146996865 8.245946434 7.935185294 8.182769849 8.311750773 8.689251978 8.428340024 8.249781794 8.30342037 7.983476454 212635286 B_lactamase_C Antibiotic resistance Beta-lactamases Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 8.228361319 8.385742835 8.044154355 8.383925554 8.384446832 8.159535706 8.468675097 8.380786135 8.678153537 8.493650696 8.185165036 75675930 ahpC Stress Oxygen stress Nitrobacter winogradskyi Nb-255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 8.415586902 8.259220541 8.711662655 8.94160734 8.787645728 9.074620689 8.763883414 8.716765163 225792025 ara Carbon cycling Carbon degradation Hemicellulose Acidobacterium capsulatum ATCC 51196 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteria;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 9.013379244 8.934423446 8.143658938 8.013579562 8.248057448 8.166102676 7.858625718 8.183539864 8.129012561 8.597732729 7416772 ppx Phosphorus Phosphorus utilization Rubrivivax gelatinosus superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Rubrivivax; 7.182172426 7.648141848 7.971037868 8.038130528 6.986239888 7.476512616 7.626853378 7.829331077 224745028 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.290568944 7.245738407 7.411642038 7.136153038 7.054285076 7.512828553 7.202813867 7.439125638 7.010440743 146412572 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Pichia guilliermondii ATCC 6260 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Meyerozyma;species:Meyerozyma guilliermondii; 7.375476728 7.521365823 7.959108097 7.977214015 7.57257535 7.438071444 7.568349359 7.52928997 156565885 pstB Stress Phosphate limitation Ignicoccus hospitalis KIN4/I 8.093616262 8.075713622 7.386991198 7.169780223 7.430245193 7.220392955 7.018558039 7.730416927 7.229983172 7.089508355 7.264007115 68135543 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.209428433 7.23282107 7.090600429 7.02537564 7.642889756 7.015451932 7.132992233 227533448 fnr Stress Oxygen stress Lactobacillus paracasei subsp. paracasei ATCC 25302 8.047749418 7.965316528 7.459473912 7.324737149 7.322448434 7.734550526 33236584 gyrB other category gyrB Chlamydophila pneumoniae TW-183 superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Chlamydiaceae;genus:Chlamydophila;species:Chlamydophila pneumoniae; 7.854861037 8.178437785 7.759946375 7.625875156 8.073859773 7.883261374 7.976345234 7.903767842 7.956728147 145965684 AceA Carbon cycling Carbon degradation others Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 8.077836673 8.19104889 8.322478025 8.209695843 7.986460863 8.320149715 8.207218964 7.953842086 8.116938356 7.988820851 8.074301371 83718333 ChrA Metal Resistance Chromium Burkholderia thailandensis E264 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 9.22763681 8.895712077 8.922747912 8.868196441 8.603863973 8.707063239 8.763361634 8.242330198 13446753 mhqA Organic Remediation Aromatics Nitoaromatics Pseudomonas putida 7.966420281 8.12221856 7.639318459 7.709366412 8.128512955 8.09465754 7.912460432 7.988258601 219952321 Catechol Organic Remediation Aromatics Other aromatics Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 8.097591933 8.16418392 7.734911719 7.74458421 8.181984132 8.313821491 8.068167345 8.173400222 7.923483371 94428680 MATE_antibiotic Antibiotic resistance transporter Oceanobacter sp. RED65 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Bermanella; 7.621117934 7.666022152 7.668103003 7.312111247 7.951697138 7.727677766 7.588179888 7.620294511 7.791843865 73538829 narJ Stress Oxygen limitation Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.913137649 7.822496301 7.837827464 8.225375136 7.828296552 8.087901321 7.935663713 8.321154846 8.136077851 17385546 narG Nitrogen Denitrification uncultured bacterium 7.179815554 7.149400856 6.838943438 7.289432342 58415302 gyrB other category gyrB Cryobacterium psychrophilum superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Cryobacterium; 8.131596741 8.406294313 7.554681208 7.673046652 7.60921493 7.172135659 7.309648514 7.434369984 7.592622206 7.675461926 169886550 pstC Stress Phosphate limitation Synechococcus sp. PCC 7002 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.015111428 8.169161737 7.765850597 7.324644346 7.284512231 7.169525559 7.029807597 7.509810956 7.266459244 7.212102603 7.375810636 254487306 obgE Stress Radiation stress Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.549625253 8.358021638 8.372226525 8.461157121 8.826128067 8.227100212 8.710737585 8.17042669 8.582888083 8.263768298 225038402 clpC Stress Protein stress Blautia hydrogenotrophica DSM 10507 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Blautia;species:Blautia hydrogenotrophica; 8.211629799 8.314610148 7.954651506 7.925615614 8.021205759 7.717042329 8.009668092 8.211937726 8.189263573 8.298835483 8.298896495 194333774 pstC Stress Phosphate limitation Prosthecochloris aestuarii DSM 271 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Prosthecochloris;species:Prosthecochloris aestuarii; 7.977601054 8.105737393 7.427990609 7.492309025 7.533380704 7.118915329 6.779694047 7.447407095 7.409801236 6.917282078 7.163380759 197756835 TerD Metal Resistance Tellurium Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.639113925 8.403220349 7.821059585 7.779917282 7.761430265 8.408055027 7.871854411 8.618012599 7.669420297 8.090988392 7.547848773 221533594 glnA Stress Nitrogen limitation Rhodobacteraceae bacterium KLH11 7.718152941 7.573701312 7.71397295 7.444728557 7.485421682 7.889087878 7.930209987 7.787861051 7.742434833 21675022 obgE Stress Radiation stress Chlorobium tepidum TLS superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 8.131099829 8.413155767 8.252695276 8.180854735 7.715065871 8.337932099 8.709848307 8.383425876 8.576381479 8.079520049 8.277553976 146311546 Mex Antibiotic resistance transporter Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 8.226582965 8.1557176 7.720083127 7.763304419 7.674744567 7.481694236 7.892462848 7.599758651 7.722215789 7.709391979 7.66107738 193226825 iro virulence Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 7.457465042 7.690863315 7.703846065 8.058949237 7.377953481 7.643430302 7.699028977 7.744964682 46307888 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.263847644 7.2542476 7.16915711 6.762713879 7.69489858 224542125 sigma_70 Stress Sigma factors Catenibacterium mitsuokai DSM 15897 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichi;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Catenibacterium;species:Catenibacterium mitsuokai; 6.971243931 6.916428175 6.833227843 7.220451081 7619813 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Nocardioides sp. KP7 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 7.767044398 7.92195444 7.89307405 7.612137677 8.140028141 8.115695003 7.945955477 7.58887928 7.781399265 118702831 pcpE Organic Remediation Herbicides related compound Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.406344888 8.177550201 7.592010322 7.69612252 8.144719676 8.110638196 7.884781336 8.131664884 7.718642396 7.701003989 7.814488331 126726253 ureC Nitrogen Ammonification Rhodobacterales bacterium HTCC2150 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.553014623 7.806942326 7.473692987 7.381859732 7.667245105 7.812877541 7.911829877 7.694487297 7.762487737 126668643 ureC Nitrogen Ammonification Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 7.536954873 7.662986106 7.512110235 7.498111661 7.969340048 7.537200484 7.868160767 8.198912617 220911546 nagG Organic Remediation Aromatics Aromatic carboxylic acid Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 8.802518303 8.74655477 8.952087106 8.833703466 8.528617596 8.751684016 8.700155429 8.61487326 8.770725244 8.541648358 8.182006611 151563940 ChrA Metal Resistance Chromium Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 7.541156261 7.3886966 7.137636787 7.584620324 6.95530343 6.946937323 7.017603378 52306995 ZntA Metal Resistance Zinc Mannheimia succiniciproducens MBEL55E 8.108845782 8.223615543 7.516742632 7.561671614 7.110058329 7.240883106 7.668942962 7.366584187 7.343838267 7.552719169 209486575 mcrA Carbon cycling Methane Methane production uncultured archaeon superkingdom:Archaea; 7.871149953 8.152265739 8.065780041 8.222658024 7.969299 7.446490018 8.058603118 7.789392634 7.870151702 7.916556864 8.306466245 148499661 vanA Carbon cycling Carbon degradation Others Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.10140868 8.028231758 7.865086815 7.454498828 7.922442483 7.869928976 7.863297189 7.893386813 7.976797478 45593178 gyrB other category gyrB Desulfuromonas palmitatis superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Desulfuromonadaceae;genus:Desulfuromonas; 7.870247186 8.410488424 7.350128654 7.250861731 6.97609026 7.516035397 6.980375156 7.238965553 227824436 proV Stress Osmotic stress Acidaminococcus sp. D21 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Acidaminococcus; 7.981868529 8.283001998 7.686327725 7.916136015 7.714658917 7.569778501 8.019396393 7.829915201 7.838466861 7.474035198 8.05950474 209966798 katA Stress Oxygen stress Rhodospirillum centenum SW 8.107165475 8.084046078 7.823855667 7.636811897 8.183564313 7.907510354 8.116973909 7.935578198 7.774978714 221723531 SMR_antibiotics Antibiotic resistance transporter Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.481884763 7.355159755 7.659396363 7.718617015 7.325207956 7.832580503 15140926 B_lactamase_C Antibiotic resistance Beta-lactamases Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 8.260296977 8.245989738 8.010683945 7.928523106 7.928759302 8.210465329 7.814003902 8.436011803 7.68099575 7.774804567 7.579645568 149177422 glnA Stress Nitrogen limitation Planctomyces maris DSM 8797 8.574834371 8.688177747 8.315722033 8.091511405 7.962308803 7.967853886 8.224365233 8.308141795 8.147125077 8.055877583 8.081945095 29604666 vanA Carbon cycling Carbon degradation Others Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 8.216824792 8.343696319 7.969040759 7.999529102 8.54773386 8.469164836 8.365018626 8.189450688 226716868 B_lactamase_C Antibiotic resistance Beta-lactamases Laribacter hongkongensis HLHK9 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Laribacter;species:Laribacter hongkongensis; 8.128780999 8.386391797 7.87444851 7.693229768 7.767725621 8.018521027 7.432278594 8.041265459 7.8100654 7.830496251 7.994879202 251776980 cytochrome Energy process Energy process Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.138014324 8.196406857 7.930495165 7.842509929 7.884655883 7.446020961 7.905594867 7.85578981 7.414563953 7.825340215 8.214056666 218439751 pstC Stress Phosphate limitation Cyanothece sp. PCC 7424 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.515790748 7.665826338 7.97283755 7.805945868 8.109348163 8.016132598 7.414254116 7.794702566 219538378 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 7.582790397 7.254571132 7.391862703 7.381058409 7.486869568 7.662245071 7.200176029 7.289589131 7.522292399 88810618 narI Stress Oxygen limitation Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 8.065861318 8.051663319 8.219031198 8.403073058 8.232189064 8.115384558 8.21892877 8.382817891 7.951341289 23494148 benAB Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 7.889639603 7.81076398 7.619991144 7.692868173 7.995169217 7.918073282 7.847976301 7.521996789 7.785186473 259416365 sigma_70 Stress Sigma factors Silicibacter sp. TrichCH4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8.201625946 8.541385318 8.587869053 8.344180569 8.030179553 7.81340791 8.526776913 8.293215245 8.325512239 8.041994734 8.31240822 116804624 nasA Nitrogen Assimilatory N reduction uncultured prokaryote 8.119260462 8.285761138 7.848306165 7.837956823 7.797058568 7.675485645 7.525346607 7.428569081 7.805471257 7.685261563 211582916 glnA Stress Nitrogen limitation Penicillium chrysogenum Wisconsin 54-1255 7.568159263 8.270783848 8.426894577 7.991930319 8.399975435 8.088859207 8.129948776 8.380213397 192764432 narG Nitrogen Denitrification uncultured bacterium 7.214920423 7.483905614 7.598606662 7.09774488 7.575951842 7.805097495 7.365408767 7.544367851 146309539 glnA Stress Nitrogen limitation Pseudomonas mendocina ymp 7.540886602 7.658401432 7.59897112 7.937312311 7.599386535 8.211251434 7.815069359 7.425753601 7.738061192 167950283 fnr Stress Oxygen stress Endoriftia persephone 'Hot96_1+Hot96_2' 7.646376607 7.716787674 7.931048577 7.332951435 7.644005684 7.808052593 7.428738927 7.982638044 7.573509254 145298512 AceB Carbon cycling Carbon degradation others Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 8.121610476 8.16090241 8.017242096 8.242182054 8.126888376 8.246024995 8.004482457 7.849578787 154252753 ahpC Stress Oxygen stress Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 7.233777085 7.410295541 7.531319111 7.723569966 6.835599985 7.68047009 7.204913952 7.338008561 7.629597504 229316086 cydA Stress Oxygen limitation Porphyromonas endodontalis ATCC 35406 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas;species:Porphyromonas endodontalis; 7.262707064 7.648755252 7.659355189 7.51104381 7.268675798 7.865153242 7.329379192 7.481071414 7.625349373 209520627 ChrA Metal Resistance Chromium Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.093523359 8.302250179 8.079295216 7.872192141 7.832749074 8.304295965 7.946842366 8.646109749 7.808866108 7.697050057 7.750143353 224609203 sigma_70 Stress Sigma factors Thioalkalivibrio sp. K90mix 7.211711286 6.821627984 110827474 Xamo Organic Remediation Other Hydrocarbons Verminephrobacter eiseniae EF01-2 7.55295704 7.239324744 7.111408268 7.29638389 7.204129002 7.870221972 7.49851797 7.64554181 7.502338805 227329101 MFS_antibiotic Antibiotic resistance transporter Pectobacterium carotovorum subsp. carotovorum WPP14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 8.43419308 8.269682695 7.783697182 7.421001891 8.115187299 8.288354875 7.669368237 8.432208521 7.694024819 7.832453273 7.930881798 84664853 pmdAB Organic Remediation Aromatics Others Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.554354105 7.60168754 7.794565909 8.076100364 8.001591373 8.075986367 8.246187492 8.109481403 8.457190774 220907406 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.439212151 7.504125907 7.47946314 7.22059348 7.726767023 239992252 pstC Stress Phosphate limitation Streptomyces roseosporus NRRL 11379 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces filamentosus; 8.24470709 8.198046946 8.083736094 8.152649721 7.923383825 8.373070305 8.226550161 8.303964693 190013419 hly virulence hemolysin Stenotrophomonas maltophilia K279a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 8.069783838 8.229484432 7.719395581 7.688954138 7.543962186 7.505147969 7.222300934 7.777926924 7.334049817 7.335617808 7.570094244 193201312 DNA_ligase Bacteria phage REPLICATION Enterobacteria phage EcoDS1 order:Caudovirales;family:Podoviridae;genus:T7-like viruses; 7.944144435 8.095363985 7.354604137 7.378412569 7.355916029 7.106000283 7.410017542 7.629914454 7.604718922 7.394570677 7.335121594 171090056 CadA Metal Resistance Cadmium Geobacillus sp. WCH70 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.33780992 7.256841047 7.159769188 7.04273132 7.20974599 7.535872321 7.183016223 6.924157533 7.402251128 242279803 hly virulence hemolysin Desulfovibrio salexigens DSM 2638 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio salexigens; 8.250526544 8.256183591 7.625570152 7.607787335 7.614174921 7.573252068 7.635710459 8.155762094 7.710944939 7.638429847 7.611742687 196246943 TerD Metal Resistance Tellurium Cyanothece sp. PCC 8802 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.12625702 8.23189046 7.510985294 7.58798425 7.846363976 7.116580194 7.928833196 7.790184168 7.688893555 7.595109729 7.567236026 255652789 amoA Nitrogen Nitrification superkingdom:Archaea; 7.124075693 7.268614937 7.166145589 6.927564393 7.938078118 7.07613449 6.991532706 75992408 pcaG Organic Remediation Aromatics Other aromatics Terrabacter sp. DBF63 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Terrabacter; 7.863764631 7.922046061 7.991571291 8.324059394 7.869023051 7.82380701 7.886586953 7.85456117 114561685 MFS_antibiotic Antibiotic resistance transporter Shewanella frigidimarina NCIMB 400 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella frigidimarina; 7.710218213 7.734954524 8.276930168 7.989440056 8.308493708 8.433110958 8.255961297 7.98601926 83590465 dsrA Sulphur sulfite reductase Moorella thermoacetica ATCC 39073 8.748894471 8.49991366 8.250140253 8.412094038 8.32672613 8.198800067 8.287580466 8.238411386 8.138135593 8.427489675 260622386 ara Carbon cycling Carbon degradation Hemicellulose Bacteroides finegoldii DSM 17565 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides finegoldii; 8.4516626 8.22516869 8.080508401 8.261149123 8.249877045 170769962 cap virulence capsule Escherichia albertii TW07627 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 8.009587271 8.202928647 7.875188593 7.685874541 7.559743545 7.378647734 7.809753872 8.074951108 7.701454557 7.70425275 7.736273285 220720997 oxdB Organic Remediation Aromatics Nitoaromatics Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 8.388599941 8.080384869 7.594669033 7.72744302 7.943561441 7.552820713 8.251847433 7.647590253 7.609258278 7.608725951 56314590 sigma_24 Stress Sigma factors Aromatoleum aromaticum EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 7.638595295 7.508436745 7.333689028 7.771389708 7.40365218 7.569643249 7.386834259 283473290 pilin virulence pilin Xanthomonas albilineans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas; 8.307233192 8.508171919 8.219638191 7.995250526 7.70370717 7.820008852 8.239730709 8.160314033 8.12267857 7.976745375 8.371479873 31338100 rd Organic Remediation Chlorinated solvents Dehalobacter restrictus 7.502840026 7.559637708 7.516499908 7.536849816 7.06571731 7.819921987 7.493934051 7.539594034 6.885191677 157145750 narI Stress Oxygen limitation Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 7.527908103 7.586095718 7.707174139 7.463977842 7.365866671 7.826203443 7.31636786 7.629581703 7.489293037 158138907 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.320875329 7.322490882 7.927351823 7.777045107 7.561080563 7.701806461 7.241219638 7.477798621 72120107 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.883569383 7.92032283 7.636586774 8.097416138 7.71870771 8.065580543 7.698776782 7.913035658 206685145 exaA Organic Remediation Chlorinated solvents Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.994152445 8.153399893 7.919156129 8.023301883 7.927308213 7.924248113 8.073231113 8.320503718 8.377806765 8.253341321 8.12841437 121552140 pilin virulence pilin Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 7.99828189 8.448666403 7.538279981 7.548018384 7.570155716 7.374296099 7.541705347 7.888808649 7.859109363 7.477622428 7.706756421 170725368 obgE Stress Radiation stress Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 7.932673998 7.707893568 7.945656716 7.567661483 8.173054737 7.789545922 7.923995714 8.265434674 7.928162267 83943402 mer Metal Resistance Mercury Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 7.711471163 7.60350669 7.379170164 7.225187369 7.680039771 8.022191269 7.550180108 7.170980626 7.464420645 118035756 phn Organic Remediation Herbicides related compound Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.892816114 7.934517845 8.223338661 8.613802798 7.936011776 8.538499219 8.010753715 7.857896315 7.85925014 1326001 lip Carbon cycling Carbon degradation Lignin Phanerochaete chrysosporium 7.844251117 7.490825437 7.788627658 7.826459924 8.003821948 7.62954386 7.986858405 223017358 ureC Nitrogen Ammonification Actinobacillus minor 202 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus minor; 6.661357091 7.328461137 6.903862436 6.935417863 26278828 narG Nitrogen Denitrification uncultured bacterium 8.007555112 8.103315485 8.004168132 7.700170524 8.4037128 7.701565717 8.367193442 8.214114394 8.239987652 90196691 gyrB other category gyrB Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 7.621980358 7.728899216 7.752030399 7.632635661 7.922905437 7.501252962 7.631720176 217161 cbb Bioleaching Carbon fixation Acidithiobacillus ferrooxidans 7.882026634 7.374013472 7.238191548 6.899134473 6.951696412 7.773315004 7.40113134 7.564860398 89573724 endochitinase Carbon cycling Carbon degradation Chitin Lecanicillium lecanii superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Cordycipitaceae;genus:Torrubiella;species:Torrubiella confragosa; 7.717969095 8.110914951 7.827242043 7.882045097 7.628703574 7.55915304 7.398846134 7.546186189 7.431299242 7.64892682 22299214 fnr Stress Oxygen stress Thermosynechococcus elongatus BP-1 8.295411023 8.400804418 8.02029082 8.105926556 7.935513943 7.711559789 7.87184211 7.69629615 7.835898738 7.532583912 7.827192395 4514483 gyrB other category gyrB Acinetobacter sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 8.197479304 7.794439856 7.946139477 7.68771487 7.792637425 7.99755237 7.775254684 7.821189018 7.977868056 87281263 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.221110703 8.336452634 8.044441216 8.02581358 7.962995059 7.951156462 8.37741394 8.059980313 8.195702651 8.080477914 8.184312252 114553250 MFS_antibiotic Antibiotic resistance transporter Mariprofundus ferrooxydans PV-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Zetaproteobacteria;order:Mariprofundales;family:Mariprofundaceae;genus:Mariprofundus;species:Mariprofundus ferrooxydans; 6.828156984 7.327246657 7.658946377 7.276352127 7.050106671 7.281172623 113954631 sigma_70 Stress Sigma factors Synechococcus sp. CC9311 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.52179867 7.099122523 7.100686567 7.268753545 6.80472951 7.542716855 6.821305768 7.234697667 72002545 sigma_70 Stress Sigma factors Prochlorococcus marinus str. NATL2A superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 8.269427657 8.35477602 9.123796561 9.043838149 8.789381234 9.121999441 8.352662698 9.499208583 9.303677945 9.083615405 126636234 gyrB other category gyrB Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 7.866983834 8.117026445 7.874758866 7.676992958 7.51395903 7.974075002 7.973254903 7.603483788 7.64217367 7.8542217 148871589 katE Stress Oxygen stress Vibrio harveyi HY01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 8.052449151 8.256290701 7.816750281 7.814507882 7.738126246 7.615867839 7.678779214 8.002148493 8.063050638 7.872757912 7.895494087 86157236 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 7.983764818 7.914103518 7.6229422 7.853423075 8.356516642 8.36094237 8.323328887 255705445 ssb Bacteria phage REPLICATION Synechococcus phage S-RSM4 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 8.057875895 8.144056971 7.101330531 7.3783079 7.490381235 7.007016141 7.38296733 7.684681449 7.311359078 7.334739764 7.620646519 34330302 ZntA Metal Resistance Zinc Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 8.210011261 8.368337457 8.011126911 7.973748803 7.95456499 7.53547688 7.865877275 8.317491883 7.48043126 7.726276386 7.696614186 153831244 CusA Metal Resistance Copper Vibrio cholerae 623-39 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 7.524047505 7.215511498 7.112468591 7.778047437 91694040 vanA Carbon cycling Carbon degradation Others Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.375959708 7.395834367 7.656242095 7.725915737 7.606235345 7.652993864 7.816810996 7.698090488 8.50460621 116634751 narG Nitrogen Denitrification uncultured bacterium 8.666457012 8.757704339 8.265332951 8.35009458 8.476771527 8.420991529 8.391686402 8.392451092 8.333510953 8.638861191 8.468781495 115257629 nhh Organic Remediation Aromatics Nitoaromatics Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.065175714 8.315014135 7.95893217 7.756669986 7.853852081 7.961390565 7.744868268 8.300072968 7.661400193 7.596289698 7.687882898 110639107 ahpC Stress Oxygen stress Cytophaga hutchinsonii ATCC 33406 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Cytophaga;species:Cytophaga hutchinsonii; 7.910400521 7.687128986 7.647089132 7.763401926 7.736805098 7.891155539 7.89219435 7.717598187 221564552 cytochrome Energy process Energy process Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 7.136880498 7.217828853 7.298174323 6.618431911 6.515655605 7.621907793 269921072 obgE Stress Radiation stress Dehalococcoides sp. GT superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.57113202 7.521412144 7.300274948 7.123874914 7.223684267 7.822211195 7.389416562 7.613302294 7.354473369 87281014 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.451642669 7.850493527 8.041778776 7.943300156 7.728182801 8.175371286 8.216627174 8.311714547 83952024 SMR_antibiotics Antibiotic resistance transporter Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 7.971480057 7.917771538 7.973914868 7.695611523 8.086343179 8.06814198 7.932217989 7.942832873 7.603137797 91780040 fnr Stress Oxygen stress Burkholderia xenovorans LB400 7.346943135 7.419289952 7.625471647 7.578885435 7.491443707 8.061336567 7.738705732 7.728918151 7.515210379 70732536 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.160366143 7.772772849 8.064188273 7.770984121 8.108239507 7.837141679 8.17922088 8.06945195 7.741488311 121551870 pimF Organic Remediation Aromatics Aromatic carboxylic acid Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 8.107042265 7.850571476 7.945382099 7.814267339 8.121330143 7.982594772 8.027757215 7.905209259 7.985054912 110817744 pcc Carbon cycling Carbon fixation Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7.662586857 7.664854315 7.635811409 7.364163443 7.822285257 7.820789577 7.890036355 7.891687019 8.040950083 120324461 ahpC Stress Oxygen stress Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 7.706521044 7.574128124 8.092104463 8.185885848 8.030906373 7.88555488 7.563972542 7.969248582 7.995244075 163847112 cellobiase Carbon cycling Carbon degradation Cellulose Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 7.728034329 7.672261634 7.672177303 7.994710497 7.765570613 8.140386154 7.637819578 7.596803751 7.742139809 39647581 bco Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.046625098 8.057943983 7.899802755 7.709444159 7.666640054 7.521833371 8.152161007 7.956731586 7.845446457 7.994158797 7.917283343 94471071 narG Nitrogen Denitrification uncultured bacterium 8.035210029 7.866882493 7.664789638 7.687184815 7.827124533 7.572622891 7.685604858 7.951276071 255301366 ppk Phosphorus Phosphorus utilization Campylobacter showae RM3277 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter showae; 8.006028283 8.523232898 7.555080871 7.531410755 7.870537816 7.363505273 7.038085393 7.615954288 7.32067389 7.606565139 7.931159922 86143348 TerC Metal Resistance Tellurium Flavobacterium sp. MED217 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Leeuwenhoekiella;species:Leeuwenhoekiella blandensis; 7.472809253 7.429676071 7.416687097 7.168136733 7.137514795 7.557764018 7.391680816 7.589975959 209504507 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.036623929 8.069537223 7.534942513 7.714703656 7.594023244 7.564854434 7.65241661 8.06817192 7.500301498 7.419977056 7.568081962 60326796 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.197634653 8.42438831 7.311125 7.445790504 7.465239231 7.374500004 6.961309345 7.523686981 7.513445261 84666487 Catechol Organic Remediation Aromatics Other aromatics Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.975155812 8.891062402 8.650648901 8.786069812 8.78524106 8.799270873 8.937285264 9.085904247 8.934312926 238595140 glx Carbon cycling Carbon degradation Lignin Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 7.474688583 7.258061412 7.247667611 7.187794753 7.116354382 7.556464975 7.160563546 7.28152112 218241019 xylA Carbon cycling Carbon degradation Hemicellulose Alicyclobacillus acidocaldarius LAA1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 7.923573481 8.128591015 7.186792614 7.327377958 7.347986022 7.307074941 6.951464751 7.273678428 7.024879144 167645881 nahA Organic Remediation Aromatics Polycyclic aromatics Caulobacter sp. K31 8.901524051 8.797217331 8.917672235 9.051829605 8.930645215 8.77481512 9.0848244 8.665042464 218250562 ppx Phosphorus Phosphorus utilization Mitsuokella multacida DSM 20544 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Mitsuokella;species:Mitsuokella multacida; 8.316954632 8.47235175 8.081679127 8.07486964 7.732840828 7.299367335 7.422386173 7.786228158 7.997490891 7.615964887 151357400 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.071944823 7.227738293 270498407 sigma_24 Stress Sigma factors Micromonospora aurantiaca ATCC 27029 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora aurantiaca; 7.615323902 7.971512557 7.75703146 8.065295184 8.073183313 8.058092433 7.916082042 7.607065499 77383371 atzC Organic Remediation Herbicides related compound Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.388666745 7.544217726 7.065529369 7.575761565 7.781403655 7.557461017 7.592599768 7.754305872 59711280 ureC Nitrogen Ammonification Vibrio fischeri ES114 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Vibrio fischeri; 7.115134017 7.106526969 7.221655387 169885157 todF Organic Remediation Others Synechococcus sp. PCC 7002 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.277339229 7.771883359 7.35048579 7.090900624 6.932527331 7.499388155 7.298657793 7.098719956 7.534399843 145047781 ureC Nitrogen Ammonification Polynucleobacter sp. QLW-P1DMWA-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 8.24265336 8.745485153 7.731127075 7.666011485 7.808174235 7.995042416 7.656916142 8.267310959 7.814111926 7.758876076 7.834928419 86159325 cytochrome Energy process Energy process Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 8.249458607 8.147871468 7.959396153 7.578296106 7.625492816 7.508516312 7.713076631 7.556309358 7.582139384 7.636798093 107103967 ureC Nitrogen Ammonification Pseudomonas aeruginosa PACS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.352773894 8.100645468 8.696763262 8.191219818 7.79339587 8.190699118 8.044441684 8.045818171 7.949841856 7.647519031 7.952208965 19915509 nifH Nitrogen Nitrogen fixation Methanosarcina acetivorans C2A superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina acetivorans; 8.470405073 8.500299662 7.886046023 7.456123283 7.716224887 7.527860252 7.336827033 7.533152213 7.887094272 221563390 mer Metal Resistance Mercury Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.275959125 8.547014052 8.243000516 8.141175998 7.953648464 8.378917025 8.083396895 8.510239695 8.224774877 8.298061432 7.960458474 219683834 hrcA Stress Heat shock Bifidobacterium animalis subsp. lactis AD011 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 7.794745313 8.245394492 7.582146715 7.356245326 7.459792998 7.324914988 6.963890826 8.220411164 7.277933256 6.883842494 258561758 AceA Carbon cycling Carbon degradation others Corynebacterium genitalium ATCC 33030 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium genitalium; 7.676019832 7.967001538 7.864998309 7.796118237 8.1119222 7.919398856 8.139009718 8.00063748 57158164 benAB Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium glutamicum 7.120402545 7.163993339 117927714 narI Stress Oxygen limitation Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 7.947382219 7.930610608 7.811706761 8.062612543 7.786356958 7.831755133 7.664571446 7.820958572 220933990 nitA Organic Remediation Aromatics Other aromatics Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 8.762071401 9.0643293 8.690766885 212686913 tutFDG Organic Remediation Aromatics BTEX and related aromatics Providencia alcalifaciens DSM 30120 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 7.748481429 8.070775558 7.38204913 7.169739711 7.082827509 7.351312527 12539417 Catechol Organic Remediation Aromatics Other aromatics Burkholderia sp. NK8 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.40008286 7.368068491 7.260491597 7.560174115 7.324936867 7.288630086 7.650844158 85708273 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Erythrobacter sp. NAP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 7.346842451 7.420055759 7.496578221 7.410421872 6.927350781 7.734281351 7.229646468 7.500922998 7.462886683 6119853 proV Stress Osmotic stress Lactococcus lactis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Lactococcus; 8.023548444 8.315609752 7.490711345 7.450846295 7.534544996 7.316429403 6.968244322 7.2355242 7.127675221 7.683557477 51893507 arsM Metal Resistance Arsenic Symbiobacterium thermophilum IAM 14863 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVIII. Incertae Sedis;genus:Symbiobacterium;species:Symbiobacterium thermophilum; 7.593037276 7.849964093 8.237302201 8.391036224 8.126803739 8.222349661 7.957102435 8.251771258 8.170515698 71042851 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 7.453922002 7.279713596 7.908609831 7.916170088 7.645939618 7.614762906 7.601195935 7.735628391 239833715 xylA Carbon cycling Carbon degradation Hemicellulose Ochrobactrum intermedium LMG 3301 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 8.481305687 8.276401236 7.771919726 7.571304541 8.549777569 8.618266235 8.073253758 8.55128955 7.963457058 8.178677463 8.475636174 225017315 pstB Stress Phosphate limitation Clostridium methylpentosum DSM 5476 7.274501105 7.455896981 7.551725913 6.932114445 6.624956223 6.965465444 7.041982955 45386197 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 7.90330417 8.166950957 8.091738895 8.050473816 8.610350871 8.32880153 8.439701132 8.300417723 8.062121194 158110903 tfdA Organic Remediation Aromatics Chlorinated aromatics Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.105325273 8.196713831 7.672926462 7.768031503 8.035229534 8.041294453 8.107424281 7.835771007 7.812984128 73539952 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.969208636 7.744176238 7.376031718 7.333954421 7.721990434 7.747188583 7.645158684 7.478157203 7.824258264 33863811 obgE Stress Radiation stress Prochlorococcus marinus str. MIT 9313 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 8.30289787 8.595642691 8.211579832 7.808343924 7.765006937 7.552374323 7.831102856 8.064913962 7.628581099 7.950777217 119376609 CadA Metal Resistance Cadmium Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.09041851 8.006105504 7.859775235 7.786657139 7.71724366 7.909338523 8.038854237 8.065369584 7.768209562 40287430 pulA Carbon cycling Carbon degradation Starch Brevibacterium helvolum superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium; 7.558211757 7.677704682 7.974570489 7.823882105 7.165062085 8.181490616 7.426337118 7.798843245 7.734883379 229610700 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.796580415 8.113499915 8.076959689 8.109623465 7.947674359 7.830313989 8.078652202 8.279158865 8.202714238 8.161228259 8.42292395 110337349 CopA Metal Resistance Copper Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 7.855677165 8.047548311 7.866485015 7.550874376 7.549487978 7.457317571 8.254752984 7.44725518 7.459203699 7.468486762 14523789 napA Nitrogen Dissimilatory N reduction Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 7.29058654 7.24284357 7.776443815 7.611677672 7.492105056 8.0117453 7.438499052 7.488158108 262185644 glnA Stress Nitrogen limitation Aeromicrobium marinum DSM 15272 8.183051359 8.194717562 8.267505978 7.860251854 8.150064429 8.009543533 7.794577555 8.119404809 7.926057447 78693025 CopA Metal Resistance Copper Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.272345156 8.604936461 8.502309364 8.494377114 8.755780276 8.631022925 8.629819773 8.554424619 55978100 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.61315694 8.478733119 8.047015453 8.437460214 8.724435141 8.700957553 8.335735867 8.447992189 8.426839657 8.695377399 8.525072643 197210099 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.980488562 7.601504234 7.355385502 7.593807691 7.426643978 7.120319256 7.226269567 7.903794135 73698632 cellobiase Carbon cycling Carbon degradation Cellulose Alicyclobacillus acidocaldarius superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus; 7.664180218 7.471370612 8.029394988 7.893456306 7.524314971 7.595980886 7.605408317 7.797322761 46307976 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.48283572 7.487353075 7.706629472 8.113611736 7.572430058 8.374363116 7.589891956 7.295352318 7.691344413 238060378 glnA Stress Nitrogen limitation Micromonospora sp. ATCC 39149 8.603417155 8.68183752 8.678598693 8.714473607 8.673907779 8.887476357 8.936550097 8.612339124 9.426206447 9.175095624 8.756433097 113473745 MFS_antibiotic Antibiotic resistance transporter Sphingomonas sp. KA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 7.812276736 8.200434857 7.622301247 7.708063374 7.558645615 7.767374184 7.450446144 7.727803893 7.658303405 7.393525791 145240205 chnC Organic Remediation Other Hydrocarbons Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.983459842 8.165028944 7.602795724 7.836839809 7.426887908 7.294858173 7.606010594 7.78412761 7.736799036 7.533107956 126236445 bphA Organic Remediation Aromatics Polycyclic aromatics Mycobacterium sp. JLS 8.221619345 8.221527739 7.844868528 7.859396255 7.898600533 7.934824011 8.113699479 8.134686089 8.175828148 8.142572231 7.969307783 114329084 nmoA Organic Remediation Aromatics Nitoaromatics Granulibacter bethesdensis CGDNIH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 7.485755106 7.325270069 7.348411289 7.595438657 7.177805225 7.593820591 7.228523272 7.046287561 7.272513559 114338572 pimF Organic Remediation Aromatics Aromatic carboxylic acid Syntrophomonas wolfei subsp. wolfei str. Goettingen superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Syntrophomonadaceae;genus:Syntrophomonas;species:Syntrophomonas wolfei; 8.014430254 8.337608352 7.85659219 7.564925808 7.476024143 7.392046482 8.204723268 7.96480974 7.841281423 7.457516409 8.114185726 167594143 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7.978990824 8.116447728 7.713263817 7.589740052 7.353056408 7.363402199 7.329058955 7.658204398 7.426720136 7.149308931 7.218157681 16127673 SMR_antibiotics Antibiotic resistance transporter Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 7.943619325 8.037380851 8.015339872 7.718747158 8.142980753 7.665468555 7.477741991 118616455 catB Organic Remediation Aromatics BTEX and related aromatics Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 7.708258096 7.876452922 8.015693487 8.279363985 8.17592123 8.17376891 8.164204302 8.232416205 7.89685139 112462087 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.657220096 7.10661818 7.430571928 7.152129196 7.676891368 165880037 exoglucanase Carbon cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.710802251 7.803522128 8.241478777 8.421507079 7.860601844 8.048304979 7.998876559 7.783643662 8.191663389 34102427 ChrA Metal Resistance Chromium Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 8.187792823 8.364500712 7.830669635 7.649531313 7.421831716 7.203118276 7.45020697 7.90381801 7.483591315 7.359583603 7.740712483 197706742 exochitinase Carbon cycling Carbon degradation Chitin Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 7.875271125 7.694368847 7.528768552 7.492898987 7.824613482 8.126974758 8.113622454 7.714408092 7.809826351 197210227 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.587396695 8.664346592 8.182216455 8.08522518 8.277882317 119497629 katE Stress Oxygen stress Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 7.109637333 7.256939111 7.397177354 7.113170164 7.650156797 7.253402663 7.211995907 7.381250465 209539071 mer Metal Resistance Mercury Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.688518701 8.662262339 8.497871719 8.779133159 8.896672214 8.813293322 9.121929461 9.038056742 8.689341067 94312521 silC Metal Resistance Silver Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.317441513 8.371234022 7.200274159 7.357653562 7.306611405 7.148241866 7.438821308 7.61782517 7.483318594 225171599 obgE Stress Radiation stress Desulfonatronospira thiodismutans ASO3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfonatronospira;species:Desulfonatronospira thiodismutans; 8.117024923 8.179460084 8.455536747 8.589827091 8.405605654 7.900662422 8.636435405 7.946787216 8.439737181 8.47666832 8.388778048 256744502 obgE Stress Radiation stress Clostridium papyrosolvens DSM 2782 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium papyrosolvens; 7.755076197 8.035321926 7.477937351 6.937079584 7.286092029 7.523503285 6.601123316 7.65467777 6.967012631 7.13794531 7.487706741 84702272 AceA Carbon cycling Carbon degradation others Parvularcula bermudensis HTCC2503 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 7.976271398 7.000239094 7.72939259 7.480732697 8.04151547 222420638 CopA Metal Resistance Copper Staphylococcus carnosus subsp. carnosus TM300 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus carnosus; 7.844327241 8.120593664 7.438362209 7.409481105 7.442228223 7.125198564 7.407823296 145228347 ara_fungi Carbon cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8.501446668 8.613052647 7.702100773 7.834902124 7.418338611 7.392883541 7.602679899 8.420463481 7.990139603 7.882630059 222151039 phoA Stress Phosphate limitation Macrococcus caseolyticus JCSC5402 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Macrococcus;species:Macrococcus caseolyticus; 8.909299379 8.546479997 8.377325017 8.486705148 8.637998179 8.309858396 8.744771904 8.550032173 8.910228869 111220456 CopA Metal Resistance Copper Frankia alni ACN14a 8.042050036 8.075880365 7.819226618 7.569363934 7.245735508 7.413808524 7.891413486 8.025277331 7.95539046 7.708545599 7.585860264 94423396 ArsC Metal Resistance Arsenic Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.032178336 8.389808381 7.395150786 7.462641722 7.825337914 8.027358872 7.497487787 8.055300007 7.704413214 7.768844614 7.589999072 124894210 ChrA Metal Resistance Chromium Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 7.929490774 7.855973524 7.886757768 7.681685583 7.97021499 8.084277957 8.040803444 8.120268977 7.668157692 91778947 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.78415676 7.830306716 7.990814831 7.963467607 7.966561149 8.175081893 8.12155722 8.272087541 8.048619869 160902622 fnr Stress Oxygen stress Petrotoga mobilis SJ95 8.022296861 8.007229361 209401854 narG Nitrogen Denitrification uncultured bacterium 8.508402981 8.416573448 7.981519874 8.082988281 7.956977813 7.896219311 7.964734193 8.267970378 8.115745018 169258160 glnA Stress Nitrogen limitation Anaerofustis stercorihominis DSM 17244 7.877715899 8.048392406 7.270048786 7.422541318 7.218796312 6.907430269 7.544746757 6.935844425 7.386374106 76056991 narG Nitrogen Denitrification uncultured bacterium 8.018899668 8.652902719 8.030861872 7.804204692 8.449538877 7.75041417 8.053541521 8.225836309 8.030639452 7.750722281 8.020386837 239814768 sigma_70 Stress Sigma factors Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 7.403271729 7.495533054 7.464882998 7.402931681 6.868986248 7.625962512 119401997 BpH Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7.57212815 7.73114964 7.734136749 7.357371939 7.906757211 7.788259993 7.978716052 7.847964393 7.840732238 224367692 sigma_24 Stress Sigma factors Desulfobacterium autotrophicum HRM2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium;species:Desulfobacterium autotrophicum; 7.110474713 7.267544563 7.228049761 7.556240525 197332547 mannanase Carbon cycling Carbon degradation Hemicellulose Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7.910273715 8.367628778 7.781297577 8.168685749 8.312022774 7.987178009 7.954587414 8.292474742 7.772245183 8.053594807 7.894531015 222449193 atzA Organic Remediation Herbicides related compound Chloroflexus sp. Y-400-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus; 8.200458063 8.295888915 8.250404102 8.378200703 8.373414954 8.201163851 8.394141481 8.47406017 8.36818685 8.623999106 8.151980951 157406207 CopA Metal Resistance Copper Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 7.868741358 7.856372746 8.177395053 7.327686798 8.017045591 7.842954644 7.932764448 167033050 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.773125853 8.250609733 7.749913161 7.859753573 7.755332989 7.462319519 7.983086548 7.697840125 7.88925531 7.754038084 7.565968776 118705598 bphC Organic Remediation Aromatics Polycyclic aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.058976922 8.214289253 8.534893027 8.49702735 8.704421399 8.010306245 8.914258973 8.359003483 8.517323705 8.661789587 8.722164337 84496580 phoB Stress Phosphate limitation Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 8.376322987 8.090269429 8.045391781 8.447756929 8.27038294 7.968050964 8.636204789 8.106833656 8.415167892 8.023460057 8.212147372 218779279 pstA Stress Phosphate limitation Desulfatibacillum alkenivorans AK-01 8.396071393 8.289870146 7.257741544 7.352548549 7.631275824 7.733719205 6.982181402 8.063495908 7.674801588 7.767630456 7.989048484 148272598 alkK Organic Remediation Others Clavibacter michiganensis subsp. michiganensis NCPPB 382 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 8.452275845 8.053621709 7.797714487 8.000277438 7.979846872 8.124955696 7.976492531 7.876557305 7.86070389 56809527 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.85535414 8.317077039 7.352838794 7.251311467 7.193999114 6.895996082 6.752422735 7.480729203 7.147702915 6.870973998 7.194354752 187477101 bphD Organic Remediation Aromatics Polycyclic aromatics Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 7.215990498 6.855214785 7.229511844 7.16008591 6.857319248 7.595856529 115522820 sigma_24 Stress Sigma factors Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.583190447 7.390642838 7.803043131 7.816790239 8.125881824 7.954731 8.155969622 7.765575266 7.72384285 153807789 sigma_24 Stress Sigma factors Bacteroides caccae ATCC 43185 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides caccae; 7.929181857 7.73853608 7.872224739 7.786375857 8.584115646 7.617205577 7.9688713 8.076710275 52348315 gyrB other category gyrB Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 8.015803277 8.123039559 8.234832329 8.217943191 8.094928332 7.697175187 8.212797937 7.998092194 8.073083421 8.243133277 7.740847161 189352883 fnr Stress Oxygen stress Burkholderia multivorans ATCC 17616 8.194793935 8.290563676 7.922795488 7.732973891 7.480126163 7.759656601 7.695021739 8.071787999 7.933504598 7.895945596 7.617085426 110822609 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.194700658 8.177353246 8.043365149 8.099806778 7.516772358 8.172514623 8.373106903 8.333000179 8.185013316 7.957587072 118424346 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.32083497 8.583431403 7.580304464 7.742941988 7.756183089 7.16018886 7.51601458 7.662823468 7.439191037 7.909931078 11691635 ArsC Metal Resistance Arsenic Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.55204904 8.324811386 8.14470018 8.05767264 8.173952385 8.122088266 8.39365777 8.487750635 8.263549429 8.244692111 8.160662952 33668980 CadA Metal Resistance Cadmium Rhodococcus erythropolis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7.750796895 8.087061234 7.89494127 7.756693471 8.323194435 8.083849539 7.952192452 8.151347588 8.019153599 116508772 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 7.947469729 7.38616396 7.764531837 8.081646576 7.663701554 7.41765983 7.615261977 7.486656899 258621032 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Vibrio mimicus VM573 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 7.213130834 7.001077031 73535158 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.116112139 8.13137344 7.905289535 7.994542241 8.006632417 7.902457849 7.932293472 8.075449968 7.896588007 7.97850951 8.030985843 283807525 sigma_24 Stress Sigma factors Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 8.418145256 8.427776942 7.997592453 8.29151206 8.666137965 8.192796089 8.864448436 157320927 iro virulence Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 7.557322111 7.932581657 7.841655186 7.577485842 7.492806449 8.061966475 7.980930554 7.554226619 7.617303517 227833977 pstC Stress Phosphate limitation Corynebacterium aurimucosum ATCC 700975 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium aurimucosum; 8.286881397 8.355988314 7.618952719 8.005124525 8.107037652 8.274589452 7.208761277 8.194686082 7.677299324 7.458052416 7.817068484 160899682 MFS_antibiotic Antibiotic resistance transporter Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.608875296 7.665867749 7.417999384 7.306041598 7.591749837 8.041752683 7.532482668 7.355162 7.60600078 92109495 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 7.443499627 7.402351673 7.510708632 7.794404343 7.616173107 8.007541175 7.322501247 7.635687979 7.642133374 262188369 obgE Stress Radiation stress Aeromicrobium marinum DSM 15272 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Aeromicrobium;species:Aeromicrobium marinum; 7.833507414 7.737571528 7.788924395 7.156146467 7.839058444 7.907812336 7.509908088 7.704902791 253575807 arsM Metal Resistance Arsenic Paenibacillus sp. oral taxon 786 str. D14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 8.108866131 8.16445396 7.605470987 7.642466838 7.524587273 7.742665955 7.420788675 8.200305239 7.644959179 7.552172677 7.535671466 152993513 CopA Metal Resistance Copper Sulfurovum sp. NBC37-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;genus:Sulfurovum; 8.04713336 7.912791466 7.558532528 8.130273897 8.105299984 7.90978308 7.837141286 7.871285898 8.118930921 194291851 cap virulence capsule Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 7.952956188 7.590063231 7.819137725 7.589103364 7.541589802 7.933907776 7.566454392 7.767230119 7.662632455 83025964 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 8.126995921 8.058152904 8.029001137 7.860541284 7.994345573 8.461771178 8.353383965 8.071668811 8.640430843 8.717859074 8.229008806 89512838 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.02082174 8.189321397 7.402908031 7.248391217 7.326261912 7.470948884 6.901586203 7.652738807 7.196835338 7.098916039 7.245870106 110679581 amyA Carbon cycling Carbon degradation Starch Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 8.154511816 8.001871304 7.153067869 7.345108264 7.777672017 7.850361261 7.328974236 7.325612745 7.616927705 7.544915006 29652570 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.126612564 8.185866905 8.156599917 8.542653563 7.511988298 8.385772634 8.035436402 7.8724781 8.400092551 240860663 fnr Stress Oxygen stress Rhizobium leguminosarum bv. trifolii WSM1325 8.2778579 8.412276574 8.392749615 8.268180054 8.380597614 8.00559618 8.054465458 7.739648438 8.353442502 157372575 arcB Stress Oxygen limitation Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 7.182799539 7.375359142 7.213463247 7.053372747 7.517553309 77459880 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.35381157 7.501780019 7.123617902 7.005558347 38234244 glnA Stress Nitrogen limitation Corynebacterium diphtheriae NCTC 13129 7.232301276 7.245916058 7.449969917 7.66868177 7.219298077 7.693066904 7.386217123 7.255002449 7.6425486 39649554 nifH Nitrogen Nitrogen fixation Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.738152812 8.160505073 7.645248792 7.518115871 7.929850351 7.499942416 7.476092022 7.550323081 146272712 ctsR Stress Protein stress Pelotomaculum thermopropionicum SI superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Pelotomaculum;species:Pelotomaculum thermopropionicum; 7.904542383 8.023241675 7.886281316 7.720805772 7.425484082 7.575788011 8.112427832 7.968721007 7.894003586 7.59467318 8.140443178 226292367 ureC Nitrogen Ammonification Paracoccidioides brasiliensis Pb18 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides;species:Paracoccidioides brasiliensis; 9.174839395 9.123319735 8.718273201 8.289396747 8.40674682 8.196677081 8.092071605 8.271980134 8.284195031 8.536747404 148570978 TerZ Metal Resistance Tellurium Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 6.945246541 7.10198533 6.717806704 6.66596096 91799570 AceA Carbon cycling Carbon degradation others Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 8.730444117 9.304531374 8.76004003 8.737023819 8.320186638 8.879851692 8.90653787 9.060942314 9.161414186 18143418 endochitinase Carbon cycling Carbon degradation Chitin Alteromonas sp. O-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 8.103393103 8.172241433 7.579492558 7.729604157 7.55671074 7.241270073 7.090934928 7.819470982 7.53434993 7.428778103 7.537500536 182440271 TerD Metal Resistance Tellurium Streptomyces griseus subsp. griseus NBRC 13350 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 7.855480721 8.206223426 7.912572575 7.80264065 7.740577951 7.658959468 8.098559858 8.014963778 8.244310948 8.039213549 8.010676676 239910864 ahpC Stress Oxygen stress Thermococcus gammatolerans EJ3 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus gammatolerans; 7.464508038 7.552790211 7.825012314 7.626292376 169814188 MFS_antibiotic Antibiotic resistance transporter Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 7.013394371 7.274777234 6.994601543 7.120916672 159892838 CadA Metal Resistance Cadmium Herpetosiphon aurantiacus ATCC 23779 7.815596537 7.573482757 7.544279089 7.226034534 8.249685307 7.116071749 6.943828833 7.476292014 259649167 glnR Stress Nitrogen limitation Lactobacillus rhamnosus GG superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 7.079690544 7.397398757 7.582591793 7.559049435 8.035133892 7.513647632 7.320298528 152968446 nifH Nitrogen Nitrogen fixation Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 7.835246416 7.927228433 7.703774358 7.902571084 8.140926536 8.267674296 7.742419362 7.708731823 91776241 aclB Carbon cycling Carbon fixation Methylobacillus flagellatus KT superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 7.890252 8.281530788 7.899484333 7.693250941 8.059263873 7.867008528 7.832932573 8.42652925 7.597924601 7.871442959 7.68395546 170096438 phoA Stress Phosphate limitation Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 8.146118231 8.159094796 7.936131847 7.517469655 8.107705017 8.078965596 7.754207847 7.50260926 7.905267377 88704870 oxyR Stress Oxygen stress Congregibacter litoralis KT71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 7.610942876 7.501341773 7.966578493 7.903328877 7.651761196 8.449207702 7.649826867 7.912218284 71833782 gyrB other category gyrB Helicobacter felis superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter; 6.926097929 7.111554186 87281159 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.097345206 8.412954355 8.077154672 8.2894397 8.035927669 7.925472805 8.217523244 8.16524291 8.019638514 7.725942606 8.078270107 186477011 ureC Nitrogen Ammonification Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.965175381 8.156746449 8.118654073 7.790926648 8.476497051 8.066994635 8.22544821 8.426146872 8.210936949 82702869 sigma_24 Stress Sigma factors Nitrosospira multiformis ATCC 25196 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira;species:Nitrosospira multiformis; 8.096820702 8.14856347 6.857381897 7.237775783 7.179244087 7.64444175 167646935 CopA Metal Resistance Copper Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.411316581 8.664330233 8.31060631 8.139400782 8.683918658 8.342619661 8.214921579 8.687929447 225377785 clpC Stress Protein stress Roseburia inulinivorans DSM 16841 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia inulinivorans; 7.493567953 7.704292282 7.669716306 7.629751948 7.299764752 7.213559797 7.715597419 71733609 amyA Carbon cycling Carbon degradation Starch Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 7.837800175 7.864469527 7.322038129 7.667432043 7.509255307 7.666127295 7.867879665 7.789694301 247543842 hrcA Stress Heat shock Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.131301596 7.304028816 7.406528959 7.286538873 77458436 silC Metal Resistance Silver Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.785228682 7.94837455 8.104867492 8.325749365 7.85337918 7.824626578 7.889913495 7.876616135 221635733 catechol_B Organic Remediation Aromatics Other aromatics Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 7.613083106 7.363923972 7.520742694 7.535558828 7.214951856 7.201260405 7.573016775 7.488424725 211905621 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.481536527 6.780564841 7.079300959 7.031404501 209486139 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.004019478 7.953795095 7.855896458 7.682355941 8.00780072 7.868007036 8.043868343 7.928434907 7.781206162 94989621 srt virulence surface protein Streptococcus pyogenes MGAS10270 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus pyogenes; 7.937591735 7.983936732 7.117604904 7.059045831 7.096751302 6.791226372 197721741 exochitinase Carbon cycling Carbon degradation Chitin Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 7.579947789 8.035919185 8.468042191 8.417883271 8.022836066 8.099488678 8.060789017 8.276383193 8.281368327 84778319 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.37175837 7.308007026 7.42675555 7.610617284 209958311 ppk Phosphorus Phosphorus utilization Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 8.298291397 8.123210835 7.267556467 7.479817496 7.679684431 8.064557039 7.403025848 7.417724198 7.626414202 7.639961086 56798905 catechol_B Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 7.298432744 7.441924945 7.577139089 7.00602575 7.356716257 7.235984626 7.965965946 117560253 pilin virulence pilin Aeromonas hydrophila subsp. hydrophila ATCC 7966 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas hydrophila; 7.674265387 8.243443927 6.797317622 6.992995244 94496902 grpE Stress Heat shock Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.252124205 8.495558957 8.435430112 8.580690571 8.394573892 8.285432141 8.155254674 8.506256536 7.710412059 56799073 catechol_B Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 7.893572808 7.908054657 7.255132299 7.210239878 7.294826736 6.868021289 7.261641142 6.924987907 6.90015816 118006356 chnB Organic Remediation Other Hydrocarbons Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 8.147495707 8.164043021 7.007580185 7.369788178 7.554794625 7.487915218 86196890 tfdA Organic Remediation Aromatics Chlorinated aromatics Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 7.675607719 7.446053221 7.339834188 7.125539615 7.555059446 7.466982323 7.446024922 7.390706517 7.472775469 162453220 chnB Organic Remediation Other Hydrocarbons Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 8.034116203 8.172142358 7.940477661 8.079035485 8.295257215 8.443444374 8.224912135 7.857780142 8.097479937 149203922 bclA Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.198685054 7.756386813 7.558440205 8.099585337 7.96386324 8.264099464 7.831053196 7.96259886 7.592454516 7.740872847 7.818735479 254281573 sigma_24 Stress Sigma factors gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.213267071 8.467465157 8.011550687 7.96346434 7.98781218 7.805115248 7.881952885 7.998326865 7.722173558 7.748010317 8.000420632 188533886 nagG Organic Remediation Aromatics Aromatic carboxylic acid Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 8.370064898 8.35421304 8.113859647 8.176775293 8.055376133 8.334332303 8.242703475 8.046956822 8.16935979 8.173579089 8.099642128 118032693 trzN Organic Remediation Herbicides related compound Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.360327101 8.404227608 8.213695574 8.21622988 8.146732806 7.98579927 7.903051399 8.31084562 8.197269032 8.273885789 8.146365399 261286280 endochitinase Carbon cycling Carbon degradation Chitin Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.444302251 8.556576629 8.148040572 8.301429954 8.159979854 7.465614965 8.59963738 8.684704793 8.353007913 190573617 pilin virulence pilin Stenotrophomonas maltophilia K279a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 7.275107572 7.488789162 7.386136664 7.152514579 7.616013796 7.116013729 7.172655312 163939696 cap virulence capsule Bacillus weihenstephanensis KBAB4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus weihenstephanensis; 8.4482914 8.48309856 7.830473676 7.979451886 8.02385476 7.820364216 8.368708223 8.292015588 8.340323121 8.285898775 27378647 fcbA Organic Remediation Aromatics Chlorinated aromatics Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.36403518 8.22386996 7.798286489 7.433814201 7.624165579 8.077351709 7.637998716 7.907764898 7.699324287 7.797993944 7.668180104 16081911 ATP_binding_protein_related_resistance Bioleaching Antibiotic Resistance Thermoplasma acidophilum DSM 1728;Thermoplasma acidophilum 7.963890651 7.451625721 7.491885915 7.478489355 7.651182095 8.024421616 7.68520435 7.694732979 7.970269327 261355942 endochitinase Carbon cycling Carbon degradation Chitin Verticillium albo-atrum VaMs.102 8.442316236 8.15814217 7.619887392 7.924309022 8.257925539 8.416763601 8.527650754 8.319259379 8.631788164 8.276858722 8.578517813 62149156 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.002405699 8.334206508 7.547010631 7.372622363 7.474119279 7.049234252 7.279962174 7.640167551 7.424155292 7.368386635 7.53600463 56314767 ebdABC Organic Remediation Aromatics BTEX and related aromatics Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 7.702960685 7.543476936 7.190567994 7.129823091 7.633721511 7.913018732 7.65915467 7.513751607 7.626067646 268593256 sigma_24 Stress Sigma factors Providencia rettgeri DSM 1131 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rettgeri; 7.05730805 7.216399618 7.208298243 6.517755691 6.637139005 7.331350655 260535824 sigma_24 Stress Sigma factors Prevotella veroralis F0319 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella veroralis; 7.524880649 7.401066072 7.332743619 7.472628885 7.531600648 7.923553741 7.415926745 7.191547752 7.458109787 42416980 phenol_oxidase Carbon cycling Carbon degradation Lignin Volvariella volvacea superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pluteaceae;genus:Volvariella; 8.507502827 9.026326703 8.335518204 8.00595497 8.208094519 7.780416619 7.591562543 7.906685334 7.891578865 8.209631947 256782485 sigma_24 Stress Sigma factors Streptomyces hygroscopicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces hygroscopicus; 7.558872632 7.91104133 7.692519837 7.308536775 7.750212432 8.102644947 7.759056157 7.801573465 7.926862026 170123497 ppk Phosphorus Phosphorus utilization Escherichia albertii TW07627 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 8.477537737 7.969062697 8.228805043 8.124826138 8.140976473 7.945669926 8.308117879 8.31780912 8.242491499 8.198472201 8.264776696 146406344 PobA Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 8.038599452 8.235723669 8.04044833 8.434021943 8.606120046 8.50944111 8.761657104 8.521075796 8.863832241 8.80064967 8.766229746 41326580 pcaG Organic Remediation Aromatics Other aromatics Corynebacterium glutamicum ATCC 13032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 8.688913635 8.193537624 8.417829763 8.28797192 8.498967112 8.218895244 8.562651501 8.31621554 8.38119774 7.983526418 262067287 ahpF Stress Oxygen stress Fusobacterium periodonticum ATCC 33693 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteria;order:Fusobacteriales;family:Fusobacteriaceae;genus:Fusobacterium;species:Fusobacterium periodonticum; 8.118193668 8.544568943 7.638253758 7.530460347 7.811041756 7.510594045 7.692790793 7.583723301 7.476035295 7.655418763 85058869 ZitB Metal Resistance Zinc Sodalis glossinidius str. 'morsitans' 8.05429454 7.907066212 7.899999094 7.831863525 8.527246685 8.157958266 8.484593435 8.452497963 209521737 phn Organic Remediation Herbicides related compound Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.814150732 7.643901836 7.720277981 7.236074427 7.751406963 7.970799659 7.718653017 7.753990349 7.942447771 170766626 CopA Metal Resistance Copper Escherichia albertii TW07627 9.036593167 8.607566025 7.959474694 8.210759305 8.451193182 8.705810797 8.435255639 9.129414836 8.25190169 8.334891356 8.085481728 221722227 pstS Stress Phosphate limitation Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.517378907 8.022801447 7.606145709 7.616876069 8.222345562 7.869386472 7.388910815 260903255 AceB Carbon cycling Carbon degradation others Vibrio parahaemolyticus AQ4037 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.818587502 7.964944017 228473377 glnR Stress Nitrogen limitation Capnocytophaga gingivalis ATCC 33624 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga gingivalis; 7.709576223 7.535134827 7.720391588 7.578945426 7.386187661 7.40169874 7.699739928 7.084513966 7.539052724 145622231 trzN Organic Remediation Herbicides related compound Petrotoga mobilis SJ95 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Petrotoga;species:Petrotoga mobilis; 7.217578164 7.068559829 6.864086658 6.77139724 7.206063966 7.137255654 7.018138608 161392286 ahpC Stress Oxygen stress Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 8.525688768 8.447349204 8.246666428 7.951376581 8.002446769 8.038392941 7.723336913 7.930715588 7.468436416 8.116386788 113902692 pcc Carbon cycling Carbon fixation Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 6.923057473 7.35811139 82719311 mer Metal Resistance Mercury Shewanella sp. W3-18-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 8.458567886 8.413512693 8.075638386 7.901077496 8.588832434 8.135022808 8.428850019 7.773356345 7.980897094 7.746886911 109454046 alkK Organic Remediation Others Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 7.544974014 7.539810392 7.794154168 7.980658616 7.564680111 8.194449689 7.763708983 7.627259851 7.959839902 74038416 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.221237922 8.358746865 8.25105344 8.283366755 7.947214902 8.230858994 8.416862462 8.711553366 8.41134748 8.268678197 8.428534661 4249556 endoglucanase Carbon cycling Carbon degradation Cellulose Humicola grisea var. thermoidea superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;genus:Humicola;species:Humicola grisea; 8.776917151 8.733182211 8.449122346 8.979499609 8.733009935 8.693747116 8.828378735 8.893010154 8.347822394 160917781 narG Nitrogen Denitrification uncultured bacterium 8.349870737 8.421042679 8.417360064 8.702888247 8.601979155 8.299134005 7.940618269 89344801 obgE Stress Radiation stress Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 8.51385724 8.486547899 8.401327068 8.726545714 8.799234883 8.722893767 9.034377059 8.849005256 8.629789795 197783494 Catechol Organic Remediation Aromatics Other aromatics Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 8.570987314 8.539354108 9.166389527 8.543289978 8.745391164 8.138844574 8.869036694 7.908440365 8.6361474 8.770757593 8.33220632 57013394 amyA Carbon cycling Carbon degradation Starch Anaerobranca gottschalkii superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XIV. Incertae Sedis;genus:Anaerobranca; 7.303717634 7.087240221 7.178585851 6.998998681 7.312128263 114321053 hrcA Stress Heat shock Alkalilimnicola ehrlichii MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 8.183830663 8.022321971 7.761237973 7.657681759 7.757867706 7.230269675 7.677300308 7.736039764 7.612539624 7.5883048 7.692931157 223964738 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichi;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Holdemania;species:Holdemania filiformis; 7.899154094 8.164935123 7.220270055 7.088914321 7.079304343 7.065211679 7.13440074 218532658 Catechol Organic Remediation Aromatics Other aromatics Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 8.273703411 8.324551378 6.973051917 7.592557841 7.633206702 7.308125129 8.261283499 7.33474971 7.211240502 7.554504567 62468100 bco Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus toluclasticus superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8.203737341 7.890439341 7.856075908 8.053361517 7.986060543 8.004645516 8.237056393 8.266049894 7.680929958 84665175 CopA Metal Resistance Copper Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.265663751 8.426576415 8.383820743 8.355726009 8.14948233 8.027323494 8.430049217 8.188341809 8.283099577 8.331598795 8.092941379 148658253 AceA Carbon cycling Carbon degradation others Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 8.496374153 8.398029763 8.290644057 7.9726819 8.479219337 8.551845176 8.238729366 8.233770262 8.240677289 70673031 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.563851832 7.626586507 7.779679453 7.584865374 7.623463683 7.841010353 7.570586275 7.54968275 7.669077899 160917392 narG Nitrogen Denitrification uncultured bacterium 7.898176647 7.956630042 7.552701335 7.683711669 7.44484881 7.867214927 7.541786018 227349432 ahpF Stress Oxygen stress Lactobacillus vaginalis ATCC 49540 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus vaginalis; 6.94588731 7.545240299 83643083 Catechol Organic Remediation Aromatics Other aromatics Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 7.230112232 7.18878315 7.103562867 6.987850157 212993699 amyA Carbon cycling Carbon degradation Starch Thermotogales bacterium TBF 19.5.1 7.877165086 8.179639271 7.350189815 7.556596124 7.519346939 7.203074597 7.289853885 7.723945512 7.79894134 7.494443352 7.496070836 224283115 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Bifidobacterium bifidum NCIMB 41171 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium bifidum; 8.04227274 8.208161694 7.752968157 7.889734962 7.695650849 7.61586338 8.036388962 8.022889633 7.750504391 7.724614563 7.914852323 156053894 ureC Nitrogen Ammonification Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 7.477662097 7.648388596 7.490793078 7.391275574 7.335583873 7.315924334 7.410707677 7.625190811 261282575 rubisco Carbon cycling Carbon fixation Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.162827003 6.970961552 7.170628834 7.130559365 7.731688327 7.388996976 7.113764299 7.297253351 224822591 glnA Stress Nitrogen limitation Natrialba magadii ATCC 43099 8.412042944 8.730655572 7.874511753 8.04416011 7.856758404 7.887785313 8.068273535 8.231278514 8.196724185 7.759365238 7.957124183 29338098 xylA Carbon cycling Carbon degradation Hemicellulose Bacteroides thetaiotaomicron VPI-5482 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides thetaiotaomicron; 8.03968927 8.398159666 7.61194644 7.116909415 7.689719828 7.490062885 7.021021286 7.59718578 260838778 pstB Stress Phosphate limitation Vibrio sp. RC341 7.829513535 7.878775833 7.957628404 7.697599545 7.792743968 8.133660209 7.862460566 7.89825614 7.81671275 74056431 sox Sulphur Sulphur oxidation Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 7.421073109 7.662431672 7.429597078 7.131778957 7.207053665 7.473068419 7.706311141 257093586 pstB Stress Phosphate limitation Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8.453633668 8.500031159 7.493228736 7.882892802 8.16420765 8.592118974 7.783968054 7.596627191 8.137533986 8.38091747 166362995 ArsC Metal Resistance Arsenic Microcystis aeruginosa NIES-843 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 7.04010361 7.2059189 7.413619661 229468649 sigma_24 Stress Sigma factors Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 8.022751158 7.963122417 7.785918548 7.64612112 7.428259966 7.256117081 7.578186873 7.723699954 7.770876551 7.691181188 7.708971398 90954569 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.732865846 8.802877247 8.551567557 8.501414377 8.30592171 8.192867288 8.391866885 8.696795459 8.338710616 8.237359385 8.442445813 126663937 fnr Stress Oxygen stress Flavobacteria bacterium BAL38 7.382052178 7.005419185 6.887443428 6.711887349 7.361551296 6.914226453 6.964025557 59479279 pilin virulence pilin Vibrio fischeri ES114 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Vibrio fischeri; 7.696094928 8.076008637 7.289479189 7.115768611 6.669978604 6.888717881 7.52654609 85062745 nifH Nitrogen Nitrogen fixation Desulfovibrio dechloracetivorans superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 7.962053997 7.831708278 7.78374755 7.559463688 7.851694846 7.892052402 7.875665995 7.842443547 7.884962398 110822527 alkK Organic Remediation Others Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7.183722382 7.335858482 7.104762595 6.929089847 7.049184841 7.075894427 119377359 SMR_antibiotics Antibiotic resistance transporter Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.489091225 8.138663261 7.908861195 7.8099786 8.625208226 8.74571177 8.402669314 8.43439217 8.285818165 8.399485138 8.443884517 241907622 grpE Stress Heat shock Desulfovibrio vulgaris RCH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 7.800756823 8.129138319 7.251864621 7.739514403 7.616185046 8.16732406 7.705213248 8.039044852 7.710460654 56609602 amyA Carbon cycling Carbon degradation Starch Cystobacter fuscus superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Cystobacter; 8.054056302 7.394319858 7.543369608 7.293144876 94495738 phoB Stress Phosphate limitation Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.461915289 8.361507433 7.80337429 8.213163885 8.457388194 8.484725692 7.436436127 7.841318912 7.917546365 8.278890734 228471183 pstC Stress Phosphate limitation Porphyromonas uenonis 60-3 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas;species:Porphyromonas uenonis; 7.55442298 7.620384966 7.698683321 7.60044744 7.773287762 7.827291273 7.717739102 7.715003872 7.746986266 148474838 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 8.006546854 7.700515874 7.712227227 8.102096462 8.095688758 8.048387293 7.566162986 7.928566522 3114666 phn Organic Remediation Herbicides related compound Pseudomonas stutzeri superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.810011767 7.54552619 7.921685021 8.360978945 7.879870518 7.769407888 8.023729823 7.66020557 226322865 pstS Stress Phosphate limitation Coprococcus comes ATCC 27758 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Coprococcus;species:Coprococcus comes; 7.284390311 7.265715662 7.40677259 7.202452655 7.117136697 7.792134021 7.499118301 7.276824289 7.576317125 226093827 B_lactamase_C Antibiotic resistance Beta-lactamases Brevibacillus brevis NBRC 100599 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus brevis; 7.596042209 8.000286925 7.551235641 7.479315766 7.425616828 7.37907371 7.311271643 7.43038242 222524078 ChrA Metal Resistance Chromium Chloroflexus sp. Y-400-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus; 8.318068377 8.472420775 8.372140524 8.347997297 8.356257432 8.15197854 8.333799335 8.540479626 8.384911814 8.450100207 8.442770107 19888419 pstA Stress Phosphate limitation Methanopyrus kandleri AV19 7.588511941 7.936663759 7.913840758 8.116596664 7.130943452 7.532886972 7.710416506 7.501743448 8.050421095 219946231 nagG Organic Remediation Aromatics Aromatic carboxylic acid Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 7.223060762 7.592746528 7.945802877 7.887866639 7.619805676 8.07685137 7.882085841 7.563313535 7.948210982 209494115 pstA Stress Phosphate limitation Arthrospira maxima CS-328 8.67761697 8.823086377 7.993908942 7.924572985 8.002503363 7.932666553 7.78751914 7.974719832 7.765878275 7.895116886 8.103874966 124027390 rubisco Carbon cycling Carbon fixation Hyperthermus butylicus DSM 5456 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Pyrodictiaceae;genus:Hyperthermus;species:Hyperthermus butylicus; 7.87183299 8.035962837 7.527436723 6.928344155 7.327170041 6.784588209 7.738959158 7.03850565 7.308782282 148254841 CusA Metal Resistance Copper Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.609633461 8.632316306 8.463413813 8.34524388 8.450998575 8.595364677 8.899285424 8.750853253 9.08719549 9.213584374 8.960824269 160917640 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.500773488 7.012905368 7.504077696 7.707809535 6.729523217 7.834934698 7.526724951 6.987835865 7.557047576 120553882 nifH Nitrogen Nitrogen fixation Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 8.845281237 8.990244664 8.750998327 8.661816114 8.710993517 8.805689778 9.035833601 8.870265849 8.451989353 111149279 TerD Metal Resistance Tellurium Frankia alni ACN14a 7.797979825 7.90008883 8.580437595 8.600291684 8.232272739 8.65212093 8.222563378 8.135847556 8.184888938 148243562 ureC Nitrogen Ammonification Synechococcus sp. RCC307 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.074413479 7.796843149 7.662257954 7.09264237 7.48502544 7.992003517 7.788213416 7.525998095 7.906209484 260593434 sigma_24 Stress Sigma factors Prevotella veroralis F0319 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella veroralis; 7.20640928 6.929968416 7.103392187 163736117 sox Sulphur Sulphur oxidation Phaeobacter gallaeciensis BS107 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 7.50022593 7.472649896 7.209472159 7.111142117 7.155585947 7.283676427 7.473877292 160917461 narG Nitrogen Denitrification uncultured bacterium 8.333515644 8.296804552 7.404673631 7.679656155 7.778135887 7.953974125 7.678383547 8.073464841 7.610842353 7.706928245 7.623051443 260772583 pstA Stress Phosphate limitation Vibrio metschnikovii CIP 69.14 8.060364846 8.342394766 8.2898765 8.145848979 7.680117874 8.116945748 8.185679575 8.291188088 8.155788386 8.309330375 7.87193345 119475373 oxyR Stress Oxygen stress marine gamma proteobacterium HTCC2143 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.227464716 7.858057317 7.873189507 8.112321027 7.18661024 8.088937398 7.445642251 7.468741228 68182286 CODH Carbon cycling Carbon fixation Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 7.656630429 7.028249614 8.072011589 7.225868957 7.979185884 94313170 fnr Stress Oxygen stress Ralstonia metallidurans CH34 8.573347146 8.707390513 8.072636633 7.933475024 8.01203431 7.88917393 7.794919344 8.011581307 7.977081584 7.733567145 8.046763701 219720141 pcpB Organic Remediation Herbicides related compound Stenotrophomonas sp. SKA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 7.519051717 7.124021843 7.638084442 7.811405209 7.180425424 8.204844622 7.199607744 7.666591341 171282112 pstB Stress Phosphate limitation Streptococcus infantarius subsp. infantarius ATCC BAA-102 7.845346368 8.268318749 6.997287106 6.925762806 7.193454476 238694910 sliding_clamp_T4 Bacteria phage REPLICATION Enterobacteria phage JSE order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.471792018 7.353906814 7.050169627 6.862311495 6.953778949 7.539977499 7.170076421 7.089475884 183600216 sigma_38 Stress Sigma factors Providencia stuartii ATCC 25827 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia stuartii; 7.824904498 7.685583567 7.705115625 7.344827982 7.700017401 7.728092275 7.720583994 8.005154796 7.547362978 27382736 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.030860545 8.126618008 7.524947694 7.62197175 7.435920876 7.359535522 7.272576669 7.625707042 7.567785962 7.619149622 188592334 pimF Organic Remediation Aromatics Aromatic carboxylic acid Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 8.114289129 7.986829084 7.340239071 7.33785112 7.919799644 8.071911278 7.375540708 8.357126161 7.554008254 7.644961721 7.954835328 227216616 srt virulence surface protein Anaerococcus tetradius ATCC 35098 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Anaerococcus;species:Anaerococcus tetradius; 7.140177905 6.848539884 157407769 atzA Organic Remediation Herbicides related compound Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 8.194000823 8.147167085 8.034771556 7.916661751 8.013857716 7.901765963 7.868998353 7.956985664 8.113137131 7.812645515 7.863724649 144944774 silC Metal Resistance Silver Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 8.214136545 8.397443905 8.192888536 8.11183413 7.964064559 7.911014301 7.685470295 7.937165568 8.014483599 7.637634952 153939768 exochitinase Carbon cycling Carbon degradation Chitin Clostridium botulinum F str. Langeland 8.815297408 9.430834059 8.470811693 8.561591977 8.379114667 7.932122019 8.017757184 8.265632369 8.140132935 8.636929538 91777301 ChrA Metal Resistance Chromium Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.510255812 7.983596539 8.452754199 7.62538741 8.506967905 7.987670275 7.775435525 8.36036474 92112480 PobA Organic Remediation Aromatics Aromatic carboxylic acid Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 8.034098893 7.965928128 7.874240479 7.987711797 8.297758227 8.4525492 8.544076288 8.102865673 8.404729089 163800750 pilin virulence pilin Vibrio sp. AND4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.33264429 8.105796342 7.952823809 7.493743705 7.58063518 7.997005356 7.643144774 7.716907984 8.021897788 18034316 dsrA Sulphur sulfite reductase Syntrophobacter wolinii superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter; 8.548875436 8.802160601 8.585538373 8.787970082 9.21561404 8.529291702 8.83504923 8.9245024 8.888278185 84787709 Arylest Organic Remediation Aromatics Other aromatics Erythrobacter litoralis HTCC2594 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 7.628873669 7.748244982 7.489144328 7.561619868 7.543861675 7.555548944 198257404 sigma_24 Stress Sigma factors Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 8.582597118 8.58863445 8.138729148 8.656718889 9.13162201 8.674228013 8.821468333 8.363675557 8.658450756 187928736 CopA Metal Resistance Copper Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.108174695 8.088839784 7.552685402 7.947299562 8.474762645 8.380502363 7.908775482 8.474568735 7.989808568 8.088183167 7.771195363 53756457 pilin virulence pilin Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 8.692344808 8.829704831 8.34417038 8.50067164 9.198059655 8.610639768 9.119285673 9.095866129 154707352 linB Organic Remediation Pesticides related compound Coxiella burnetii Dugway 7E9-12 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Coxiellaceae;genus:Coxiella;species:Coxiella burnetii; 7.787987643 7.830554955 7.131297443 7.037533646 7.501702896 7.081034267 7.007815793 7.66404086 7.112078174 7.100932847 6.944696496 169638860 obgE Stress Radiation stress Candidatus Desulforudis audaxviator MP104C superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Candidatus Desulforudis;species:Candidatus Desulforudis audaxviator; 7.832875429 7.583658313 7.363796139 7.534377179 7.737276875 7.963326222 7.717778837 7.453527467 7.543485952 225420060 ppk Phosphorus Phosphorus utilization Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 7.786101522 8.026675344 7.446352281 7.524405456 7.708913868 7.701459685 7.59013887 7.239847568 7.539573153 145286439 alkB Organic Remediation Other Hydrocarbons Rhodococcus erythropolis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7.803110196 7.728831635 7.644805624 7.764529712 7.771894735 8.119711121 7.759307865 7.831298519 8.004835147 93450477 ArsC Metal Resistance Arsenic delta proteobacterium MLMS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 8.57378141 8.841345358 8.698545776 8.859942279 8.62776217 8.174498654 8.800263983 8.195657784 8.708437906 8.332337956 8.85816131 260461550 pstA Stress Phosphate limitation Mesorhizobium opportunistum WSM2075 8.366005001 8.115156687 7.993377797 8.269632404 8.087606052 8.259890356 8.399744347 8.657207469 8.154596653 24981973 ZntA Metal Resistance Zinc Pseudomonas putida KT2440 8.002797119 7.445114599 7.159693366 7.471360054 7.018074836 94415192 endochitinase Carbon cycling Carbon degradation Chitin Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.251751976 8.46576441 8.103982983 7.902099845 7.880675844 7.859826732 8.084133652 8.263030349 8.222240766 7.939496367 114543518 exaA Organic Remediation Chlorinated solvents Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.09613828 7.856679988 7.820054226 8.070088366 7.89760025 8.430354491 8.032260323 7.898881984 7.883614342 58616585 pimF Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 7.493319455 7.473671208 7.736720651 7.445177138 7.376374218 8.023114611 7.166191881 7.662962367 256647770 phoB Stress Phosphate limitation Acetobacter pasteurianus IFO 3283-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pasteurianus; 7.977716947 8.398819169 7.396144398 7.477689997 7.292246157 7.468468171 110680835 vanA Carbon cycling Carbon degradation Others Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 6.984510413 7.104704575 7.340827879 283847350 sigma_24 Stress Sigma factors Bacillus cellulosilyticus DSM 2522 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cellulosilyticus; 7.169275724 7.330494697 7.293053463 6.726105741 7.402307967 7.058307107 7.016206742 6.905307682 41058922 chnB Organic Remediation Other Hydrocarbons Brachymonas petroleovorans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Brachymonas; 7.260703305 7.277458227 7.599275756 7.933735355 7.406295053 8.114392027 7.310403706 7.575302388 7.595529772 84385009 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 7.416389879 7.666035909 7.929916607 7.946811184 7.62664627 8.22112106 8.017107476 7.645217214 7.845100793 170690559 amyA Carbon cycling Carbon degradation Starch Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 8.177929038 8.229110382 7.333321668 7.943110946 7.739754148 6.93856161 7.21497092 7.53801359 73538845 4HBH Organic Remediation Aromatics BTEX and related aromatics Ralstonia eutropha JMP134 7.371738045 7.254987464 7.173610671 6.977472514 7.026968516 7.726305095 7.451144625 7.404315242 7.47447419 183981632 CueO Metal Resistance Copper Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 7.329791934 7.412837905 7.685889662 7.641436075 7.392040743 7.954109966 7.497362347 7.322321408 7.537147338 121595035 CopA Metal Resistance Copper Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 8.154735142 8.918474853 8.409956369 8.184010574 8.020191458 7.972628972 8.710286055 8.183054582 8.548672575 8.550860892 8.56821028 205374142 hrcA Stress Heat shock Bacillus coahuilensis m4-4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coahuilensis; 7.135346953 7.081134853 7.088333276 194341644 obgE Stress Radiation stress Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7.545369075 7.802776828 8.080088181 8.261065994 7.349527157 8.234045694 7.544429172 7.83268274 7.815906677 196039689 nbaC Organic Remediation Aromatics Nitoaromatics Bacillus cereus NVH0597-99 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 7.03700622 7.530039022 58415308 gyrB other category gyrB Leifsonia xyli subsp. cynodontis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Leifsonia;species:Leifsonia xyli; 8.167673769 8.211811511 8.150761026 7.996533127 8.360124328 8.289604003 8.243496702 8.154134909 8.043023798 76577452 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.373822884 8.322579021 7.655334423 7.642411869 8.315899234 8.234677955 7.988420794 8.437693407 7.95991044 7.899307251 7.865441822 229331302 pstC Stress Phosphate limitation Geobacillus sp. Y412MC52 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.668754717 7.445170381 7.626307994 7.185023361 7.175542433 7.908019843 7.298577202 7.544683087 38234476 pstA Stress Phosphate limitation Corynebacterium diphtheriae NCTC 13129 7.236404899 6.973199807 7.212549312 84514488 phoB Stress Phosphate limitation Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 7.596601247 7.25812482 7.277546402 7.466107198 222112582 pcc Carbon cycling Carbon fixation Diaphorobacter sp. TPSY superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax ebreus; 7.682902682 7.657583038 8.14551956 7.678503001 8.146838638 7.615291542 7.854297288 7.728980847 69154184 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.427053065 8.595933675 8.39798 8.351845163 8.850322415 8.379259135 8.63112499 8.49335675 8.432186517 119463015 grpE Stress Heat shock Nodularia spumigena CCY9414 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nodularia;species:Nodularia spumigena; 7.12555567 6.96605988 7.194145814 7.078749257 75675104 ZntA Metal Resistance Zinc Nitrobacter winogradskyi Nb-255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 6.983769579 7.444519268 187426227 atzA Organic Remediation Herbicides related compound Akkermansia muciniphila ATCC BAA-835 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Akkermansia;species:Akkermansia muciniphila; 9.017791795 8.897395141 8.68285561 8.622798167 8.400471688 8.136011357 8.354922444 8.257909861 8.459911727 8.486482565 8.632393005 37527834 sigma_70 Stress Sigma factors Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 7.44829681 7.213642 7.121946606 7.477672501 7.089294457 7.598276608 7.241603686 7.178112717 169760730 iro virulence Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.466498829 9.456473985 9.144713331 9.485314677 8.85530696 9.457215281 9.374657803 9.173211739 118757788 gyrB other category gyrB Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 7.28075582 7.239732063 7.010583016 6.855512407 6.666371551 7.731313951 6.851313083 7.035809519 7.276847338 218721807 nmoA Organic Remediation Aromatics Nitoaromatics Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 7.750446987 8.020995002 7.466250858 7.334057558 7.514859395 7.533012902 7.067929753 7.569038486 7.155754355 7.319446925 7.394492175 194100459 holin_type_2 Bacteria phage LYSIS Klebsiella phage K11 order:Caudovirales;family:Podoviridae;genus:T7-like viruses; 8.151983892 8.545587788 7.980441898 7.785321375 8.135762835 7.658183745 7.628547317 7.98122441 7.882207247 8.103178816 7.967767139 227547976 pstC Stress Phosphate limitation Corynebacterium lipophiloflavum DSM 44291 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium lipophiloflavum; 7.404788557 7.673425016 7.883663121 7.971326672 7.825835169 8.18606631 8.225435444 7.968255024 8.367195708 69933172 pheA Organic Remediation Aromatics Other aromatics Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 7.468978669 8.096347273 8.337793807 8.150790933 8.051611283 8.249845546 8.263524504 229865848 hrcA Stress Heat shock Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 8.40515902 8.308001934 8.272670917 8.45262052 8.328978137 8.383989545 8.870602905 8.545885154 8.979732487 8.705732759 8.687941919 218220997 ppk Phosphorus Phosphorus utilization Mitsuokella multacida DSM 20544 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Mitsuokella;species:Mitsuokella multacida; 7.151983059 7.386277538 7.502886696 7.47079459 7.322605717 7.801212254 7.204037203 7.628705553 7.564040491 239796526 pstB Stress Phosphate limitation Desulfovibrio magneticus RS-1 7.410361716 8.082626646 8.394041663 8.179513769 7.755873763 8.375782249 7.759020555 8.006909662 7.901646792 94152609 ChrA Metal Resistance Chromium Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 7.682886355 8.072825527 7.61679813 7.56176247 8.389596269 7.994317977 8.050745498 7.782957581 7.939612919 117998459 vdh Carbon cycling Carbon degradation Others Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.655569689 7.65213727 7.380179877 7.159725678 7.572201755 7.385345438 7.320563102 7.629681685 260776677 AceB Carbon cycling Carbon degradation others Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 8.288500799 8.394709543 8.218248707 8.111443386 8.615825157 8.210068525 8.586357409 8.400120768 8.491394829 163761232 pimF Organic Remediation Aromatics Aromatic carboxylic acid Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 8.292392284 7.679408263 7.972765675 8.104331552 7.980658472 8.123311204 7.855354633 7.825135663 258636327 ahpF Stress Oxygen stress Pantoea sp. At-9b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 7.608781416 7.940184049 8.342256117 8.557604342 8.456030612 8.268202671 8.263297593 8.452555445 8.592255295 11344610 nirS Nitrogen Denitrification Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.372175302 7.387710348 7.391279029 7.120982397 7.599241074 7.804302787 7.770670468 7.407661685 7.560127133 212171564 alkB Organic Remediation Other Hydrocarbons Flavobacterium sp. 1-C-1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium; 7.933770959 7.326816999 7.827375798 7.70293492 7.837169102 238703723 cydA Stress Oxygen limitation Yersinia aldovae ATCC 35236 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia aldovae; 8.138103184 7.916889661 7.158153427 7.186239651 7.558023537 7.103434307 6.963150654 7.671630293 7.278846109 7.394173987 256399527 pstB Stress Phosphate limitation Anaerococcus vaginalis ATCC 51170 7.932512493 7.931776655 7.104427902 7.228384612 7.268486546 6.771703991 7.591083181 6.913456731 7.459290364 197713857 ppx Phosphorus Phosphorus utilization Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 7.388084626 7.24396804 7.570348222 7.512564136 7.298684742 7.375952885 7.693440573 7.431958564 158340411 sigma_70 Stress Sigma factors Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;genus:Acaryochloris;species:Acaryochloris marina; 7.662304018 7.990252008 7.69281374 7.744768385 7.816128474 108804678 Apc Organic Remediation Aromatics BTEX and related aromatics Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 7.088692646 7.010334491 7.538057436 7.52253683 7.258893451 7.432736189 7.152833198 7.310070682 149812185 nhh Organic Remediation Aromatics Nitoaromatics Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.324569237 8.048801027 7.870945985 8.100908155 8.110030728 8.402092727 8.071826517 8.3814849 7.94246468 7.911423346 7.860823821 194013352 iro virulence Bacillus pumilus ATCC 7061 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pumilus; 7.180055235 7.088564168 46520035 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.523232826 7.599322169 7.342452657 7.368337083 7.128154609 7.750959936 7.496899789 7.6906931 7.472174428 109290291 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.064102722 8.192727779 7.356765361 7.633983679 7.845264407 7.919262001 6.92271179 8.086370442 7.368074015 7.536679614 7.319451832 87120792 glnA Stress Nitrogen limitation Marinomonas sp. MED121 8.802833195 8.896695498 8.724818277 8.641971504 8.803189222 8.979437412 9.408373002 9.030668893 9.167796045 9.026544887 8.959726698 20093804 atzA Organic Remediation Herbicides related compound Methanopyrus kandleri AV19 7.677998277 7.629501259 7.360830735 7.233834797 7.371961296 7.517520787 7.459742005 7.298943078 157847787 phoB Stress Phosphate limitation Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 8.087207577 8.099806826 7.843877814 7.601660279 7.527713986 7.672463692 8.015691743 7.868997187 7.795710731 7.509883715 7.926197582 164375125 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.895762335 7.967489032 7.559448646 7.518387081 7.93492916 8.214553054 7.69806559 7.658655287 7.928690437 111021182 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.715861783 8.796895552 8.366868754 7.578696533 8.158318827 8.199378496 8.310852777 8.551621489 8.587710778 8.344742438 121534075 obgE Stress Radiation stress Thermosinus carboxydivorans Nor1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Thermosinus;species:Thermosinus carboxydivorans; 7.988447488 8.12493344 7.72552336 7.816673789 7.906454112 8.149796755 8.031455071 7.89434142 8.105315569 218225098 ChrA Metal Resistance Chromium Parabacteroides johnsonii DSM 18315 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides johnsonii; 8.190859473 8.093702316 8.355779639 8.025612426 7.935097554 7.999407856 8.547480283 7.977361935 8.395000513 8.464690423 8.170785547 163857542 hly virulence hemolysin Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 7.727343497 7.51770624 7.160094802 7.454545879 7.562049808 8.051772526 7.683735826 7.458370033 7.461105169 46444417 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Candida albicans SC5314 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;genus:Candida;species:Candida albicans; 7.018896732 7.114644184 85095855 nitA Organic Remediation Aromatics Other aromatics Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 7.525978725 7.625654696 7.757602402 7.628856605 7.249106186 7.580601714 7.395741031 7.495120729 7.252016211 220925683 gyrB other category gyrB Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 8.330009004 8.35269312 8.476467124 7.821827887 8.571848186 8.044743585 8.32800582 8.367681276 7.627270299 71000864 alkK Organic Remediation Others Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 7.779076185 7.242379552 8.026832278 211959111 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 8.175497723 8.370899861 7.775846235 7.727796033 7.668485041 7.724613783 7.473643544 7.772769857 160945279 sigma_70 Stress Sigma factors Faecalibacterium prausnitzii M21/2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Faecalibacterium;species:Faecalibacterium prausnitzii; 7.696520545 7.505833066 7.631473231 7.441786672 7.76215919 7.650657612 7.706149883 7.643801464 4572432 metC Metal Resistance Mercury Sphingomonas paucimobilis superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 7.907977641 8.189035116 7.856596691 8.196909583 7.940494058 7.976144188 8.287117489 8.25431877 8.470154393 8.217396297 8.147615897 212531261 BpH Organic Remediation Aromatics Aromatic carboxylic acid Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.382541291 7.391570401 7.525747878 7.161710252 7.01059057 7.524866788 66840877 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7.858070223 8.373131828 7.743121343 7.805868939 7.571871229 7.529044758 7.594563077 7.990296192 8.034907768 7.752743671 7.599010591 3282755 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira; 8.034238807 8.097318862 7.55774293 8.149941452 8.047848024 7.956374081 7.925325226 7.642333807 7.843188289 146328950 phoB Stress Phosphate limitation Dichelobacter nodosus VCS1703A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Cardiobacteriales;family:Cardiobacteriaceae;genus:Dichelobacter;species:Dichelobacter nodosus; 8.180903115 8.220912199 8.069133057 7.952349263 7.844122959 7.805354505 7.711335221 8.426112436 7.907395878 7.995908687 7.700167982 169641073 katE Stress Oxygen stress Sporothrix schenckii superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Ophiostomatales;family:Ophiostomataceae;genus:Sporothrix; 7.646198576 7.392444543 7.716998994 7.477570343 7.843613308 7.605763564 8.127295728 7.84449073 7.693425574 110632826 oxyR Stress Oxygen stress Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 8.110815677 8.416400112 7.190777071 7.582955523 7.378113738 7.664593217 6.788586351 7.58772814 7.358759882 7.063097929 6.947333492 77378479 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.694378688 7.537382493 8.066638939 8.029490738 7.70124052 8.321860299 7.6848703 7.746342564 83593526 alkK Organic Remediation Others Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 8.254989074 8.346052832 7.99947708 8.027969084 7.989816377 7.603973815 8.083207637 8.06717749 7.539877913 7.887903961 226834184 glnA Stress Nitrogen limitation Actinomyces urogenitalis DSM 15434 7.256515573 7.332800349 7.566286901 7.875207074 7.426976266 7.933842863 7.527456102 7.44899814 7.697307492 197103189 sigma_32 Stress Sigma factors Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 8.258390794 8.110283187 7.938716351 7.475625907 7.927852613 8.118308546 7.968005557 8.183191513 7.763286191 7.682897248 7.832944069 229815176 sigma_70 Stress Sigma factors Collinsella intestinalis DSM 13280 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella intestinalis; 7.415843766 7.68936833 7.830737507 7.909081883 6.960337644 7.424590655 7.305734265 7.54080397 21467103 ZntA Metal Resistance Zinc Rhizobium etli superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 8.300030753 8.0401321 7.935329228 8.080919926 8.341067604 8.499506422 8.299567195 8.618420019 8.001845126 8.24011693 8.098574595 121588255 sigma_24 Stress Sigma factors Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 6.957816018 7.378619813 119391437 narG Nitrogen Denitrification uncultured bacterium 9.984888587 9.515508135 169406580 tutFDG Organic Remediation Aromatics BTEX and related aromatics Clostridium botulinum A3 str. Loch Maree superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium botulinum; 8.061932536 7.773579188 7.93052562 7.575752499 7.486625043 7.865824679 154362302 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 6.822089652 7.20434813 7.05357106 7.333945198 15898393 Fe_S_cluster_binding_protein Bioleaching Electron transport Sulfolobus solfataricus P2 7.949296225 8.136045995 6.878142605 6.901163871 7.28155002 6.973332344 7.353714755 161075719 CueO Metal Resistance Copper Verrucomicrobiae bacterium V4 superkingdom:Bacteria;phylum:Verrucomicrobia;order:Methylacidiphilales;family:Methylacidiphilaceae;genus:Methylacidiphilum;species:Methylacidiphilum infernorum; 8.009458171 8.15866182 7.443835873 7.27822782 7.338239575 227872608 pcc Carbon cycling Carbon fixation Oribacterium sinus F0268 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Oribacterium;species:Oribacterium sinus; 8.072586029 8.322989825 7.445031658 7.381104627 7.421332762 7.16018886 6.984343524 7.673857477 7.374967661 7.383237465 7.444030954 189433213 CopA Metal Resistance Copper Bacteroides coprocola DSM 17136 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides coprocola; 8.380065311 8.346796537 7.72321096 8.182569013 8.16958416 7.997842491 7.578714969 7.658671227 7.799696384 8.057959056 39973847 ZntA Metal Resistance Zinc Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 7.365859726 7.248830869 7.075864683 7.128575209 7.513911366 7.197326041 7.272012542 7.401575872 47716848 mcrA Carbon cycling Methane Methane production uncultured archaeon superkingdom:Archaea; 7.986382149 8.09960643 7.299909374 7.333429197 7.111718768 7.052304498 7.800751578 227950938 glucoamylase Carbon cycling Carbon degradation Starch Meiothermus silvanus DSM 9946 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 9.099006555 8.955942231 8.836769556 8.728201833 8.760112021 8.345794334 8.859579547 8.316480329 8.676523253 8.588239452 8.8458955 157915897 sigma_70 Stress Sigma factors Salinispora arenicola CNS-205 8.434170041 8.107115707 7.883389153 7.82627459 8.184591003 8.36436151 8.186736624 8.251495554 8.084351346 70780037 GroES Stress Heat shock Streptococcus downei superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 8.065621544 8.10457904 7.324497457 7.598074822 7.363596422 46307954 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.463762533 7.454851492 7.181072268 7.043886595 7.061499173 7.446263391 89092596 nreB Metal Resistance Nickel Oceanospirillum sp. MED92 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Neptuniibacter; 8.269393039 8.67693453 7.87836796 7.651623039 7.705744432 7.566858291 7.592160939 8.089585669 7.810843151 7.814907274 7.958052379 15672319 ahpC Stress Oxygen stress Lactococcus lactis subsp. lactis Il1403 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Lactococcus;species:Lactococcus lactis; 7.704414871 7.97520914 7.092765097 6.66339529 7.014242354 6.887925229 162451216 pstA Stress Phosphate limitation Sorangium cellulosum 'So ce 56' 7.513499217 7.617572537 7.507115897 7.38991872 7.538176668 7.594333166 7.554850135 119513069 vanA Carbon cycling Carbon degradation Others Nodularia spumigena CCY9414 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nodularia;species:Nodularia spumigena; 8.056495151 8.394034717 7.35138236 7.080341529 7.244465564 6.917372195 7.765365174 7.310021302 7.055563415 7.43873671 117981619 trzN Organic Remediation Herbicides related compound Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.333848936 8.545751229 8.204341212 8.068842027 8.472183642 8.534604028 8.236109955 8.346878328 7.983018 61220985 tftH Organic Remediation Aromatics Chlorinated aromatics Arthrobacter sp. PNP1 8.365179484 8.20585604 7.718813103 8.332730639 8.282243291 8.089590307 7.862669248 7.603113933 256690991 ara Carbon cycling Carbon degradation Hemicellulose Halorhabdus utahensis DSM 12940 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus utahensis; 8.52606385 7.979850731 7.766514878 8.051112701 8.718240617 8.690350796 8.231633157 8.537221873 8.229738176 8.055867018 91777761 phtA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.524518597 7.531809635 7.422392984 7.54664161 7.458488212 7.932154742 7.685669703 7.432596931 7.444007341 87124602 SMR_antibiotics Antibiotic resistance transporter Synechococcus sp. RS9917 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.343553844 6.898537432 50122911 AceB Carbon cycling Carbon degradation others Pectobacterium atrosepticum SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 7.660949196 7.695668924 7.838891651 7.355760604 7.877658426 7.559832173 7.373484326 8.004872543 8.092902455 49648886 AceB Carbon cycling Carbon degradation others Yarrowia lipolytica superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Dipodascaceae;genus:Yarrowia; 8.188055769 8.603760353 7.800551397 7.711587419 7.69604188 7.4583335 7.789044327 7.921677731 7.992244432 7.630489493 7.853455003 224472728 phenol_oxidase Carbon cycling Carbon degradation Lignin Laccaria bicolor superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria; 7.717812488 7.562190713 7.230358623 7.900976889 7.867979675 7.5777908 7.547776394 7.547217847 256825001 obgE Stress Radiation stress Kytococcus sedentarius DSM 20547 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermacoccaceae;genus:Kytococcus;species:Kytococcus sedentarius; 8.891346206 8.849964008 7.947874282 7.680702885 7.725276638 8.408137608 8.05344147 8.01997157 8.100677668 8.319161478 206688090 sox Sulphur Sulphur oxidation Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.093260884 7.790827232 7.875523086 7.808723792 7.689993601 7.905835188 7.783532032 7.912601258 7.805494479 49612895 silC Metal Resistance Silver Erwinia carotovora subsp. atroseptica SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 8.076882192 8.021130457 7.602064214 7.397197346 7.044853547 7.392958582 7.115250265 7.85717177 7.557765848 7.595747719 120325188 linB Organic Remediation Pesticides related compound Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 8.449976574 8.343514221 8.133937291 8.01942531 7.628713647 7.86220785 8.263175473 7.949275654 8.283310333 7.91684895 8.067568128 22652066 endochitinase Carbon cycling Carbon degradation Chitin Serratia liquefaciens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 7.988826128 8.207891959 8.018156495 7.860537774 7.783984075 7.539618889 7.820165449 8.201074469 8.05254843 7.828858777 8.038120423 38619362 type_III_secretion virulence secretion Pseudomonas sp. KD superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 9.090989473 9.114018028 9.234724265 9.234250321 9.253230466 9.117238885 9.116784138 9.086628535 9.278801478 186473311 MFS_antibiotic Antibiotic resistance transporter Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.184735554 8.107155489 8.220495591 8.083329436 7.834181029 8.282497838 7.984269519 8.177863814 8.200891565 8.154154105 8.038977795 209965564 mer Metal Resistance Mercury Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 8.03734472 8.085161499 7.502210241 7.864830547 8.020108787 8.002990436 7.260941459 8.11752456 7.496952624 7.529637012 7.787211992 167568050 type_III_secretion virulence secretion Burkholderia oklahomensis EO147 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia oklahomensis; 7.575056022 8.248130055 8.198641112 7.840675322 8.279579652 8.230228314 8.326078006 8.293280037 88947166 ChrA Metal Resistance Chromium Desulfotomaculum reducens MI-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum reducens; 7.720080778 7.44864076 7.43269527 7.380191673 7.164993459 7.830994336 7.298625581 7.430877295 7.192688594 86142289 ara Carbon cycling Carbon degradation Hemicellulose Flavobacterium sp. MED217 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Leeuwenhoekiella;species:Leeuwenhoekiella blandensis; 8.261859454 8.449028552 7.307482702 7.166039058 7.671846133 7.724851235 7.526294608 8.123894454 7.523936569 7.58156669 7.629178231 83755665 pstC Stress Phosphate limitation Salinibacter ruber DSM 13855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 8.617059453 8.821469022 7.932067226 7.89942589 7.937990056 8.078663115 7.802924592 7.793153175 7.453591931 8.0282449 110632685 ArsC Metal Resistance Arsenic Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 7.876370248 8.210765169 7.212656134 7.483693095 7.743906397 7.730824807 6.822893528 7.963527757 7.013556666 7.288175455 7.531149741 222354048 hao Nitrogen Nitrification uncultured bacterium superkingdom:Bacteria; 7.235879957 7.778744472 7.61231623 7.277070459 7.846575951 7.293778007 7.339613676 7.99381586 196172142 sigma_32 Stress Sigma factors Anaeromyxobacter sp. K superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 7.723713445 7.846514188 7.910792396 7.466341547 7.793096094 7.654038523 7.503409929 7.382394722 226820432 srt virulence surface protein Lactobacillus gasseri MV-22 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus gasseri; 8.050317637 8.209150012 7.666093761 7.732143153 7.407324218 7.218902157 7.097596705 7.88892595 7.723191474 7.328666733 7.459643018 121604898 linB Organic Remediation Pesticides related compound Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 7.447373338 7.386959802 7.218842603 7.022022129 7.532257694 156523553 todC Organic Remediation Aromatics BTEX and related aromatics uncultured bacterium 7.294956233 7.492254164 7.422514158 7.078817036 7.718095927 7.167157563 7.245788733 7.696345956 256832613 endochitinase Carbon cycling Carbon degradation Chitin Jonesia denitrificans DSM 20603 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 7.920546524 7.699747284 8.353771168 8.160723074 7.679417147 8.342756641 7.717815938 7.932667914 115370038 pcaG Organic Remediation Aromatics Other aromatics Stigmatella aurantiaca DW4/3-1 9.766439502 9.600034212 10.36798827 9.856339141 9.193152855 10.06874873 10.04600387 10.16024444 9.830033882 9.680806307 9.717318967 117610080 nreB Metal Resistance Nickel Magnetococcus sp. MC-1 superkingdom:Bacteria;phylum:Proteobacteria;genus:Magnetococcus; 8.101932809 8.048047207 7.921313608 7.521075625 8.044449442 7.771877601 7.783278906 7.839634407 7.869952513 iegAssA14 AssA Carbon cycling Carbon degradation Others 8.265950456 8.137741346 7.780658925 7.659259066 7.751537607 7.675385075 8.015345315 7.813010035 7.782730247 7.91510328 7.738138123 219999821 sigma_24 Stress Sigma factors Clostridium cellulolyticum H10 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium cellulolyticum; 7.085763399 7.203128842 148260411 heat_shock_protein Bioleaching other category Acidiphilium cryptum JF-5 8.336335714 8.273227898 8.033530851 8.184297258 8.556531484 8.64201648 8.207526046 8.134748871 8.05690519 183177298 pcc Carbon cycling Carbon fixation Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 7.713582985 7.408184553 7.908411188 7.817361322 7.952914967 7.935077318 8.122964914 8.009434524 8.04858309 220711728 phtA Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.218083754 8.277290015 8.287684123 8.091845031 8.677384462 8.341276001 8.43276746 8.314020243 8.154669421 268160790 ureC Nitrogen Ammonification Photobacterium damselae subsp. damselae CIP 102761 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium damselae; 7.843474189 7.822175039 7.675082897 7.556159856 7.810351558 7.714707817 170740754 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 8.124437451 8.229495438 7.874791714 7.33771226 7.902211748 7.671782481 7.619346384 7.514011602 7.841359332 7.563753017 3860037 arhA Organic Remediation Aromatics Heterocyclic aromatics Cycloclasticus pugetii 7.719720712 7.317513698 7.599477586 7.457369697 7.530497538 7.341011231 7.637041073 7.483732511 217508339 CadA Metal Resistance Cadmium Thauera sp. MZ1T 8.28080634 8.621798831 7.699968115 7.35186894 7.642864893 7.736272349 8.202176973 111072010 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.732084762 7.596481847 7.358894465 7.365872685 7.280277469 7.87675163 7.623095177 7.47990599 91775713 Mex Antibiotic resistance transporter Methylobacillus flagellatus KT superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 7.19456242 7.368856961 7.170067556 7.638982012 119962410 nagG Organic Remediation Aromatics Aromatic carboxylic acid Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 7.205369387 7.213372045 7.367533603 7.791173065 6.699524397 7.949517064 7.247219405 7.164580789 7.606098813 240170387 sigma_24 Stress Sigma factors Mycobacterium kansasii ATCC 12478 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 7.934704542 8.333175782 7.784513791 7.304675322 7.634369676 7.646640875 7.639680412 7.995789393 7.389983163 7.430679446 7.430008688 213406373 ureC Nitrogen Ammonification Schizosaccharomyces japonicus yFS275 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Schizosaccharomycetes;order:Schizosaccharomycetales;family:Schizosaccharomycetaceae;genus:Schizosaccharomyces;species:Schizosaccharomyces japonicus; 7.081992579 7.081960977 6.722949366 7.317314175 74318611 fnr Stress Oxygen stress Thiobacillus denitrificans ATCC 25259 7.927368202 7.671078567 7.916405303 7.984889316 8.061602903 8.349910014 8.213251741 8.16818332 8.223671206 145229657 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.956912873 7.937935002 7.914199457 7.906399144 7.750208966 8.203047427 7.856948917 7.941456589 8.014653806 110825110 bphA Organic Remediation Aromatics Polycyclic aromatics Rhodococcus jostii RHA1 8.723155204 8.936976575 8.606938812 8.435905748 8.280010823 8.45810733 8.530730289 8.218074608 8.474658108 8.330798089 8.464134291 94481134 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas sp. A4 8.495567705 8.851893157 8.607174667 8.146176385 7.986663039 8.325246175 8.252348234 8.42344878 8.426516186 8.145546253 8.23852937 170653354 CadA Metal Resistance Cadmium Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 7.742409036 7.678098673 7.477267487 7.940934376 7.59231555 8.186651035 7.606633921 7.67687745 7.970496794 114329042 iuc virulence aerobactin Granulibacter bethesdensis CGDNIH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 8.286660232 8.302106982 7.16876473 7.259570572 7.824293101 7.781694972 7.449418701 7.963786825 7.608166854 7.527460041 7.380027727 218221236 CadA Metal Resistance Cadmium Mitsuokella multacida DSM 20544 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Mitsuokella;species:Mitsuokella multacida; 7.411958585 7.38640584 7.452599666 7.403234327 7.119646416 7.232681495 6.928646039 133916259 SMR_antibiotics Antibiotic resistance transporter Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 7.319356846 8.308239871 8.224736073 8.261009999 7.868837919 8.395802371 8.100309283 7.889254909 8.150824814 84713201 benAB Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 7.748658658 7.746343735 7.981138818 8.161731205 7.687599477 7.951324233 7.775720494 7.847500906 238938850 groEL Stress Heat shock Zygosaccharomyces rouxii superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Zygosaccharomyces; 6.969351724 7.201686831 6.967019552 6.803265532 7.074838209 7.325915223 6.992565877 6.946411972 7.071900383 192764510 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.911388773 8.272268029 7.407342948 7.4753988 7.395196395 7.473588583 7.572374658 7.393556352 83725334 ChrA Metal Resistance Chromium Ralstonia solanacearum UW551 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 7.626841782 7.668040071 7.70455519 7.556078776 7.605360226 7.860675523 8.044904486 7.908944796 7.868080058 160895782 alkH Organic Remediation Other Hydrocarbons Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.276236941 7.032755923 83572339 obgE Stress Radiation stress Moorella thermoacetica ATCC 39073 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Moorella;species:Moorella thermoacetica; 7.474992067 8.198654217 8.296905521 7.314908466 7.771328796 7.632210948 7.876233135 78222129 cytochrome Energy process Energy process Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 8.326378042 8.266613816 7.844947941 7.898653763 7.946268679 7.873296975 7.806622588 8.107260481 8.075699205 8.057901569 7.868292216 254522776 pilin virulence pilin Stenotrophomonas sp. SKA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 8.239777342 8.312192886 7.620875433 7.669370814 7.18341323 7.480482786 7.895844658 7.966772161 7.915306421 7.878561383 169620558 pheA Organic Remediation Aromatics Other aromatics Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 7.665123154 8.032587134 8.259352405 8.395078909 8.40465587 8.493421924 8.624576903 8.753823127 238899260 pstA Stress Phosphate limitation Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7.156343155 6.918356599 7.053858509 110562625 amyA Carbon cycling Carbon degradation Starch Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 7.936008563 7.704405772 7.946120641 7.709447435 7.699348599 7.761381272 7.232001149 7.384405597 7.412999938 113529174 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 7.430301755 7.041327257 7.400800702 7.410432461 7.726245823 7.42894415 7.275931548 7.207584647 146338162 AceB Carbon cycling Carbon degradation others Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.406095741 8.33790447 7.601730577 7.687257261 7.803659692 8.371109205 8.083638399 8.516332069 8.234087554 255259489 rubisco Carbon cycling Carbon fixation Sideroxydans lithotrophicus ES-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Sideroxydans;species:Sideroxydans lithotrophicus; 7.930394367 7.792101457 7.375298109 7.19781653 7.692596401 7.934311471 8.060509788 145305240 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 8.307871638 8.198209489 8.422743865 8.403629639 8.13312452 8.584232356 8.011512602 8.197280917 7.998421428 126236462 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.59866368 7.737043334 7.876825724 7.966575142 8.117205662 8.387910061 8.61917378 163851998 gyrB other category gyrB Methylobacterium extorquens PA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 8.657986723 8.265768392 8.200072336 8.216358347 8.51034555 8.35672087 8.005633701 8.082139149 39935212 pcc Carbon cycling Carbon fixation Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.721495276 8.033765681 8.022181118 8.354106008 8.050511827 8.515659294 8.241407832 8.250284411 66876307 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. TFB 8.179909604 8.105762303 8.37349095 8.170791766 8.054526644 8.136998477 8.223297418 8.167323537 7.999951902 8.574871195 187478080 bphA Organic Remediation Aromatics Polycyclic aromatics Bordetella avium 197N 7.757461392 8.108139003 7.900298345 7.605851451 7.710341352 7.977409323 8.132346973 7.637003512 7.939265961 118170744 cpnA Organic Remediation Other Hydrocarbons Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 7.830511879 7.872928316 8.086361932 8.36124707 8.173780666 8.373165315 8.443348225 8.238453906 8.358623385 94481139 phdCI Organic Remediation Aromatics Polycyclic aromatics Sphingomonas sp. A4 8.467497947 8.553311745 8.396900957 8.383446667 8.232536696 8.272056307 8.736189949 8.605857767 8.525027784 8.361745954 8.500623937 77382555 catB Organic Remediation Aromatics BTEX and related aromatics Pseudomonas fluorescens Pf0-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.556942496 7.408447558 7.490177304 7.046523395 7.387416974 7.649100841 159891802 cap virulence capsule Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 7.948866625 7.930018409 8.496745064 8.109251834 7.799337079 7.902925026 7.716900115 3157624 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 8.001761055 8.145708911 7.023501215 7.252879729 7.456717961 7.49758384 6.85728317 7.196836631 7.482274339 121606509 bclA Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8.473297433 8.510002078 8.661409862 8.165175978 8.675875888 8.146102911 8.504364691 8.484851999 7.83638146 6689526 merT Metal Resistance Mercury Xanthomonas campestris superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas; 8.358626281 8.454304574 7.770690204 8.496651006 8.48322077 8.301893353 8.562381823 8.378510503 8.356669164 8.28054665 85690313 pimF Organic Remediation Aromatics Aromatic carboxylic acid Erythrobacter sp. NAP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 8.270188186 7.326293831 7.75375399 8.015745527 8.156632645 8.133691654 7.709332025 7.847521063 7.810794345 70981552 nagI Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 7.752525266 7.880304703 7.573809998 7.132300729 7.908636107 7.581480028 7.593481351 7.249040798 7.694047787 262037089 amoA Nitrogen Nitrification superkingdom:Archaea; 7.325047138 7.244371996 7.439430984 6.838320234 7.163692999 271500435 type_III_secretion virulence secretion Dickeya dadantii Ech586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 7.294493874 7.041066976 8.159631876 8.40861487 7.788773599 8.500439905 7.65969968 8.058320664 8.323182652 25169117 nicdehydr Organic Remediation Aromatics Heterocyclic aromatics Arthrobacter nicotinovorans superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8.562466334 8.463541593 8.414300141 8.241128109 8.447888908 8.336504263 8.339544881 8.513231191 7.848401229 188996820 dnaK Stress Heat shock Sulfurihydrogenibium sp. YO3AOP1 7.580022121 7.202364219 6.841030801 7.600350468 197626355 ChrA Metal Resistance Chromium Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 9.277308736 9.098601278 9.150702331 8.93216553 9.215182315 8.835042113 9.182887854 8.914721466 9.197527644 9.542755991 9.013330317 32308039 narG Nitrogen Denitrification uncultured bacterium 7.262746403 7.181146156 7.288744203 7.168040455 6.84903292 7.48342268 7.295579758 7.278430754 7.609643541 156235616 AceA Carbon cycling Carbon degradation others Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 7.655784252 7.852962066 7.17774233 7.076216246 7.820704731 7.280620267 7.208419112 157408039 CopA Metal Resistance Copper Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 7.856323104 7.876108961 7.727130371 7.778248353 8.146910117 8.137950248 8.386670032 8.178927175 8.271280072 33576420 Arylest Organic Remediation Aromatics Other aromatics Bordetella bronchiseptica RB50 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella bronchiseptica; 8.363854033 8.731394975 8.392832381 8.22140697 7.893443926 8.154816259 8.663167052 8.501376512 8.316897019 8.155279623 8.446547603 271502376 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 7.368103474 6.905548008 88798320 ZntA Metal Resistance Zinc Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 7.461228712 8.00500889 8.2964882 8.287416688 8.043812381 7.944858011 7.756279041 8.000415569 229857339 cda Carbon cycling Carbon degradation Starch Streptosporangium roseum DSM 43021 8.473953055 8.445604967 8.104383376 7.572917648 8.022604333 7.766815865 8.097713396 8.448834079 8.255666297 7.862283796 7.92453297 157407598 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 8.376711857 8.205495059 7.863073934 7.846296102 8.061866571 8.090444265 7.842539892 7.921333524 7.909635488 8.081445373 157411512 napA Nitrogen Dissimilatory N reduction uncultured prokaryote 8.250958726 8.311949805 7.820700407 7.517798649 7.656092989 7.609960892 7.801790104 7.981480489 8.041160225 8.220763249 7.949318604 219951309 iro virulence Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 7.959658781 7.999411367 7.833582783 7.943085301 7.998777105 8.225348266 8.019144561 7.596960149 8.165412588 220905420 SMR_antibiotics Antibiotic resistance transporter Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 7.824275183 7.641626119 7.589961993 7.544346017 7.305567443 7.536429886 7.714869852 7.592338466 158424656 ChrA Metal Resistance Chromium Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 8.548640592 8.446672286 8.271380296 8.733433701 8.559763969 8.31791064 8.598645056 8.72113462 8.323520182 109452471 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.034819593 8.266465423 7.455982229 7.352735132 7.131001149 6.946082625 7.544652635 157369771 phoA Stress Phosphate limitation Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 8.529920564 8.401267702 7.709244087 7.65546857 7.777214488 7.71257887 7.991556524 7.645705661 7.690309072 7.712569092 150036060 sox Sulphur Sulphur oxidation Thiocystis violacea superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocystis; 7.194891207 7.550559888 7.836751125 8.081382535 7.015457741 7.501503298 110284320 SMR_antibiotics Antibiotic resistance transporter Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 7.45483412 7.771526158 7.87904647 7.896400778 6.8277735 8.242473269 7.04804646 7.133347473 7.546544358 145017599 tftH Organic Remediation Aromatics Chlorinated aromatics Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 8.539440664 8.470608486 8.444421785 8.613463296 8.622393036 8.590187122 8.487359195 8.74847067 8.616621284 119960118 dsrB Sulphur sulfite reductase uncultured prokaryote 8.323921881 8.10434218 7.894062869 8.198458764 8.169384306 7.890442311 8.351633667 8.1361072 8.142865611 8.069946285 7.798707572 28921991 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 7.5063729 7.413806975 7.379732846 6.880368236 6.843778595 7.355369336 7.267876332 7.312756027 126179299 CopA Metal Resistance Copper Methanoculleus marisnigri JR1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanoculleus;species:Methanoculleus marisnigri; 7.349463865 7.679263707 7.456010127 6.811880242 7.347377448 7.120020544 7.492935394 7.53305158 239977836 sigma_24 Stress Sigma factors Streptomyces albus J1074 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces albus; 8.863365018 9.050480652 8.932583314 8.92089529 8.408869349 8.792134457 9.32388187 9.061111451 8.522311803 9.043106112 254445640 grpE Stress Heat shock Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 7.077435926 7.287437412 7.234330029 6.855858676 7.701970915 47600976 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.423492155 7.175165994 226944710 ahpF Stress Oxygen stress Azotobacter vinelandii DJ superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 7.917161387 8.187307374 8.194939053 8.435029639 7.976580061 8.079008424 7.867859957 8.148089083 7.841235825 89055560 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 7.534243825 7.45406851 7.408391353 7.123210577 7.803316867 7.478985477 7.688569096 90106701 Catechol Organic Remediation Aromatics Other aromatics Rhodopseudomonas palustris BisB18 8.164867649 8.285771542 7.403450765 7.54442181 8.03843423 7.933142789 7.523042463 8.08629929 7.437342056 7.604521806 7.921278371 76058144 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.834369892 7.677009542 7.799896783 7.99820067 7.380988922 7.424997702 7.310973661 59892666 nifH Nitrogen Nitrogen fixation uncultured forest soil bacterium superkingdom:Bacteria; 7.983983152 7.931886995 8.112071723 7.75233703 8.209561398 8.158660663 8.064768034 7.494059224 157911845 pstB Stress Phosphate limitation Dinoroseobacter shibae DFL 12 8.712688314 8.519429191 8.362460744 8.346840466 8.863246187 8.361959705 9.073693825 8.167218285 8.210383247 7.839643989 156740604 pstB Stress Phosphate limitation Roseiflexus castenholzii DSM 13941 7.246607836 7.153088491 7.00489557 7.113151786 6.710443672 7.623287897 219545927 atzA Organic Remediation Herbicides related compound Candidatus Methanosphaerula palustris E1-9c superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;genus:Methanosphaerula;species:Methanosphaerula palustris; 8.094956964 8.358108701 7.707888743 7.689707959 7.809096638 7.702475914 7.569632844 8.315620164 7.453922425 7.774636244 88178036 nitA Organic Remediation Aromatics Other aromatics Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 7.4710596 7.88430547 8.395684081 8.289389724 8.094864477 8.370817389 8.307037442 8.334095288 8.484793713 77976372 nplT Carbon cycling Carbon degradation Starch Yersinia intermedia ATCC 29909 8.502681428 8.510437686 8.132549291 7.966137441 7.735303222 8.151936909 7.643564518 8.362076042 8.594776297 110594154 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 7.332406153 7.493573201 8.120891706 8.159579612 7.780798672 7.528032953 7.715827448 7.926259239 84684763 ChrA Metal Resistance Chromium Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.709253865 8.488204004 7.937929149 8.239942907 8.216933831 8.318833532 8.537029529 8.341302225 8.29210519 8.276846081 221724187 B_lactamase_C Antibiotic resistance Beta-lactamases Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.440317357 8.16078174 7.967098786 8.033430378 8.159811845 8.504661357 8.334414409 8.145336479 8.378881316 187921617 silC Metal Resistance Silver Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8.223415635 7.97515237 7.378882438 7.438426313 7.61718689 7.66064104 7.24173274 8.144995103 7.369013467 7.304462979 7.448086309 94313334 tfdA Organic Remediation Aromatics Chlorinated aromatics Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.572247074 8.303827619 8.215765664 8.805048808 8.695499022 8.910659005 8.620196118 8.558780212 224924161 phenol_oxidase Carbon cycling Carbon degradation Lignin Pycnoporus sanguineus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Pycnoporus; 8.207509496 8.270833731 8.162481131 8.596938667 8.438718567 8.237500991 8.349838345 8.345730263 8.549933111 8.248639058 207084204 obgE Stress Radiation stress Campylobacterales bacterium GD 1 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales; 8.428287909 8.095187872 7.640174143 7.873845017 8.314983143 8.251900586 7.905347941 8.717649733 7.763151993 7.73954674 7.794045919 153870586 narG Nitrogen Denitrification Beggiatoa sp. PS superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Beggiatoa; 7.781771432 7.752726842 7.883732686 7.288553015 7.472180996 7.636154587 7.391085926 7.672852652 7.674543618 146190643 Catechol Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.849575782 7.262237679 8.03258149 8.415764629 7.86510941 8.169494726 7.790805806 7.774350966 8.076124293 115377695 pcc Carbon cycling Carbon fixation Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 7.288978052 7.462661413 7.746091847 7.84740491 7.325574584 7.354295034 7.184612408 7.354383568 222354198 hao Nitrogen Nitrification uncultured bacterium superkingdom:Bacteria; 7.260218322 7.316187882 7.099095865 7.245784766 7.385257054 259502520 clpC Stress Protein stress Lactobacillus antri DSM 16041 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus antri; 8.199892165 8.146270897 7.599269372 7.548119577 7.464488375 7.272083952 7.625099991 8.002757901 7.844620465 7.803669621 8.211047433 221083924 pcaG Organic Remediation Aromatics Other aromatics Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 8.60503364 8.39708116 8.48686943 8.370389234 8.194439415 8.43802128 8.730557434 8.344581678 8.535950013 8.405188822 8.354137072 33391375 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.41933589 7.377353598 7.402026093 7.472757204 7.543133874 7.982865054 7.448719851 7.529433869 7.68014037 116618237 cadBD Metal Resistance Cadmium Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc mesenteroides; 7.022821359 7.403613034 7.097982981 6.908881957 7.133912288 218781617 pcc Carbon cycling Carbon fixation Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 8.347156368 8.443507972 8.687465782 8.00753188 8.949097917 8.470243859 8.623160164 8.872774971 120558046 CadA Metal Resistance Cadmium Shewanella sp. W3-18-1 7.480075123 7.358536243 7.400007198 7.391053744 7.454344496 7.600583035 7.486115243 7.335371163 7.449912764 145297884 Arylest Organic Remediation Aromatics Other aromatics Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 8.536092325 8.671929661 8.192373092 8.479531376 8.321545807 8.576535928 8.746795233 8.379097261 8.679523942 8.193384801 8.519563599 54025205 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 7.781919997 7.939471315 7.794891346 8.290566232 7.897144389 8.03212402 7.823163262 7.796695771 7.531593135 113460778 TerD Metal Resistance Tellurium Haemophilus somnus 129PT 7.298185786 7.302899857 7.057778024 7.483597347 163761597 ChrA Metal Resistance Chromium Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 8.824124744 8.80474772 8.600753347 8.79618173 8.62816723 8.982957869 8.596073406 8.385137589 8.748857237 9.007809507 8.853569105 254464559 inv virulence invasion Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.019322185 8.172544213 8.215664024 7.855393664 8.281768838 7.802047685 8.305239867 7.840475397 8.142142485 7.87853365 83841131 glnA Stress Nitrogen limitation Sulfitobacter sp. NAS-14.1 8.487874366 8.494375618 8.028397916 8.013898591 8.126309565 8.100168861 7.774348222 8.370015599 7.938948914 7.86515826 7.734884728 46445853 obgE Stress Radiation stress Candidatus Protochlamydia amoebophila UWE25 superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Parachlamydiaceae;genus:Candidatus Protochlamydia;species:Candidatus Protochlamydia amoebophila; 7.192107627 7.287579026 6.973775036 6.63616557 7.497964582 6.929237661 7.051838184 229450683 sigma_24 Stress Sigma factors Bacteroides sp. 2_2_4 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 6.933027983 7.084472149 7.223289048 7.037376032 6.847852897 619722 fnr Stress Oxygen stress 7.777550777 8.156856326 7.875591297 8.152881137 8.542346449 8.516127064 8.677542751 8.440980099 8.05258047 21227351 rubisco Carbon cycling Carbon fixation Methanosarcina mazei Go1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina mazei; 7.909235558 8.042848 7.752260606 7.105770651 7.873151903 7.832834733 7.603139082 7.667506042 7.828352378 220925981 fnr Stress Oxygen stress Methylobacterium nodulans ORS 2060 8.003101139 8.208006747 8.242760507 8.421465349 8.363396623 8.424934898 8.597726496 8.683644618 8.614988628 77387424 pulA Carbon cycling Carbon degradation Starch Rhodobacter sphaeroides 2.4.1 8.087145244 8.431244013 8.253746235 7.833071706 7.368861361 7.854571028 7.964305762 8.247985826 7.869382325 7.801304875 7.702917042 260893783 ctsR Stress Protein stress Ammonifex degensii KC4 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Ammonifex;species:Ammonifex degensii; 7.891781201 8.040796519 7.622219742 7.367408251 7.200471492 7.279546324 7.009325729 7.879164452 7.126790861 7.437705419 7.202222918 112462023 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.131338368 8.153037825 7.474067713 7.569005511 8.015560837 7.902123508 6.953940756 8.189921884 7.093432001 7.528357718 7.968096178 255333916 fnr Stress Oxygen stress Hyphomicrobium denitrificans ATCC 51888 8.552075135 8.424406423 8.023545484 8.109436009 8.018902833 7.826951945 7.946562594 7.999424582 8.043218011 227311162 narI Stress Oxygen limitation Denitrovibrio acetiphilus DSM 12809 superkingdom:Bacteria;phylum:Deferribacteres;class:Deferribacteres;order:Deferribacterales;family:Deferribacteraceae;genus:Denitrovibrio;species:Denitrovibrio acetiphilus; 8.226908198 8.250351251 7.434035997 7.393450744 7.499798544 7.352179849 7.039514982 7.691593911 7.26348762 7.508774107 7.654908393 257475655 obgE Stress Radiation stress Eggerthella lenta DSM 2243 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Eggerthella;species:Eggerthella lenta; 7.962890331 8.346170286 7.86927533 7.502501323 7.751972159 8.069319529 8.053202199 8.083082764 7.765216589 8.04699612 84500058 pimF Organic Remediation Aromatics Aromatic carboxylic acid Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 7.92873473 7.895322733 7.702899635 7.403408587 7.673100088 7.925224723 7.564023184 7.923602143 7.76359759 7.644983015 7.602210594 76578112 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia pseudomallei 1710b superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 8.020000036 8.107689883 7.513706222 7.327076292 7.647097398 7.120957579 7.625724538 7.439850551 7.310431459 7.846249853 88600694 obgE Stress Radiation stress Neorickettsia sennetsu str. Miyayama superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales;family:Anaplasmataceae;genus:Neorickettsia;species:Neorickettsia sennetsu; 8.222686003 7.937326447 7.65004005 6.707159757 6.636969768 7.711044935 7.542574259 7.894615182 7.735476635 118424487 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.277780673 8.547238225 7.755989617 7.870915597 8.092806798 8.153780333 7.802660871 8.183375169 8.106985927 8.187539894 157918261 nbaC Organic Remediation Aromatics Nitoaromatics Salinispora arenicola CNS-205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 8.412356931 8.210171903 8.266861606 7.549203052 8.168884712 7.979214956 8.036616152 8.360322988 7.646067386 148262039 nitrogen_fixation_genes Bioleaching Nitrogen Acidiphilium cryptum JF-5 7.867628096 7.875324949 7.858961651 7.285208997 8.056438819 7.602677589 7.689564385 7.777489221 41324514 alkK Organic Remediation Others Corynebacterium glutamicum ATCC 13032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 7.669170969 8.066983726 8.308372515 8.37164625 8.065912195 8.012221354 7.463693824 7.898340848 7.595578136 397847 HBH Organic Remediation Aromatics BTEX and related aromatics Pseudomonas sp. 7.965521477 8.182969256 7.760095653 7.648579523 7.758840275 7.808957293 7.841990602 8.237852598 7.757586978 7.84405749 7.904739274 150384407 gyrB other category gyrB Victivallis vadensis ATCC BAA-548 superkingdom:Bacteria;phylum:Lentisphaerae;family:Victivallaceae;genus:Victivallis;species:Victivallis vadensis; 8.364806625 8.244712223 8.401201153 8.390955892 8.029685469 8.101118067 8.776767597 8.393971344 8.538472521 8.398822803 8.503586908 iegcoxL78 CODH Carbon cycling Carbon fixation 7.816861617 7.625934889 7.248089679 7.405882905 7.514300436 7.779487351 7.548200855 7.598918643 7.985553861 269211368 hly virulence hemolysin Actinomyces sp. oral taxon 848 str. F0332 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 848; 8.531706836 8.62987237 8.287713601 8.255079943 8.082128997 8.112339989 8.262902921 8.289192333 8.170320953 8.304125612 8.443788936 260635657 cda Carbon cycling Carbon degradation Starch Prevotella sp. oral taxon 472 str. F0295 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella sp. oral taxon 472; 7.865293047 8.160513756 6.988222057 7.155939365 6.961340416 7.057903424 6.598609629 6.878586653 7.399803923 119459032 atzA Organic Remediation Herbicides related compound marine gamma proteobacterium HTCC2080 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.858212309 7.694026404 7.594901656 7.624905814 7.768371238 8.080980317 8.0782058 8.143270842 153004924 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Anaeromyxobacter sp. Fw109-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 8.392189508 8.6067593 8.589456224 8.416507876 8.069421088 8.705291668 8.458044169 8.37034522 8.304134221 8.316985137 8.229589553 145703109 glycosyl_transferase_EPS Bioleaching EPS Metallosphaera sedula DSM 5348 7.057624343 7.772198836 114188379 bphA Organic Remediation Aromatics Polycyclic aromatics Aspergillus terreus NIH2624 7.602937042 7.296766103 7.453010906 7.56758214 7.594619938 7.749221133 7.467506389 7.245038585 7.632368736 145252904 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger 7.204426632 7.037805385 7.427503401 119226060 pheA Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 7.182807847 7.62673551 7.622936813 7.638796311 6.822770506 7.984823002 7.274314489 7.172450399 8.139859216 10173209 bglP Stress Glucose limitation Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 7.718029257 8.028258122 7.108393946 7.095139668 7.402443912 6.860182883 6.672280237 7.649224673 62906754 dsrB Sulphur sulfite reductase uncultured prokaryote 7.558610287 7.747914021 7.887750147 7.791609715 7.543667968 8.023600341 7.414126056 7.520333886 7.670293603 109452390 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.252201217 8.251965791 8.039528294 7.802919756 7.43831426 7.151015336 7.442913051 188591197 pimF Organic Remediation Aromatics Aromatic carboxylic acid Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 7.53078539 7.481350503 7.563878336 7.394480639 7.115787749 7.740438219 7.634939078 7.472290525 7.706570577 224922708 narI Stress Oxygen limitation Ochrobactrum anthropi superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum; 7.167504702 7.750080309 8.00214133 7.308422422 7.736470285 7.309947847 7.520447531 151302269 APS_AprA Sulphur adenylylsulfate reductase Desulfosarcina variabilis 7.411675313 7.361329127 7.161351833 7.039300983 7.190424501 7.607402008 7.34790155 7.166085772 7.316846581 15669204 pstS Stress Phosphate limitation Methanocaldococcus jannaschii DSM 2661 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanocaldococcaceae;genus:Methanocaldococcus;species:Methanocaldococcus jannaschii; 8.006287353 7.882457636 6.993130859 7.155912089 6.911915507 6.891817602 158510634 cap virulence capsule Desulfococcus oleovorans Hxd3 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus;species:Desulfococcus oleovorans; 8.348190121 7.787344981 8.428454612 7.593548189 8.524794749 7.923697772 8.179428004 8.434189595 8.005585802 212529588 nitA Organic Remediation Aromatics Other aromatics Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 8.489869228 8.294652997 6.782547259 7.33234883 8.509535147 8.6544101 7.810581779 8.312329802 8.312736835 8.433976798 8.205156931 124266671 rubisco Carbon cycling Carbon fixation Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 7.680673173 7.816665586 7.862656358 7.572197781 7.655832284 7.99475437 7.931937021 7.782389967 247539301 ahpC Stress Oxygen stress Dickeya zeae Ech1591 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 8.277102254 8.258152226 7.583610244 7.384029031 7.955766199 8.076905795 7.984756057 8.116142489 8.03345929 8.160293861 8.287829069 150031719 ArsC Metal Resistance Arsenic Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 7.805609408 8.232296354 7.62197148 7.584563024 7.670396892 7.406146278 7.493951925 7.85725741 7.705647864 7.546954705 7.771212888 85094673 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 7.519344688 7.460908399 8.056236843 8.209023491 7.68519221 8.307771446 7.659413125 7.322122925 7.452939947 269828429 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Vibrio alginolyticus 40B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 7.608750913 7.539591414 7.469405097 7.984761272 7.301394276 7.047129986 7.818692958 192764326 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.956329511 8.111929981 7.393056449 7.419583563 7.470044527 7.302907726 7.521427692 7.690441721 7.422899412 7.135372361 2098748 oxyR Stress Oxygen stress Xanthomonas campestris superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas; 8.436224577 8.140035457 8.270366001 8.281358656 8.232004157 8.354628488 8.702578088 8.494949922 8.623333767 8.524856804 8.639876504 14025078 gyrB other category gyrB Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 8.496823501 8.710842595 7.824449799 8.080026117 8.46654449 8.632555885 8.083240025 8.743049723 8.448267837 8.448571256 8.588908144 257797212 sigma_32 Stress Sigma factors Desulfohalobium retbaense DSM 5692 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium;species:Desulfohalobium retbaense; 8.027101921 8.012684817 7.70826609 8.325563432 8.156516933 8.022593043 8.315502427 8.144643315 182434029 ureC Nitrogen Ammonification Streptomyces griseus subsp. griseus NBRC 13350 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 8.331031904 8.218408 8.001845598 8.617813927 8.573113917 8.405196919 8.229520069 7.881422923 8.302639222 84352334 silC Metal Resistance Silver Burkholderia cenocepacia PC184 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 8.202284447 8.260466995 7.8952876 7.924653244 8.384626917 8.00147978 8.132592016 7.983951252 7.849333961 3261674 ppk Phosphorus Phosphorus utilization Mycobacterium tuberculosis H37Rv superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 7.394157864 7.753019031 7.504073132 8.002494965 7.540510521 7.398530999 7.482919793 7.879599925 2459569 dsrB Sulphur sulfite reductase Pyrobaculum islandicum 7.917204296 7.934639025 7.243455439 7.507167194 163857899 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 8.264350884 8.31180803 8.050978484 7.874273201 7.450032244 7.760376768 7.899382696 8.118832726 7.917733837 7.667948351 7.612192688 21222888 alkK Organic Remediation Others Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.422674475 8.481241834 8.546288287 8.52563599 8.377039642 8.422897372 8.753086984 8.555201605 8.94288741 8.417183447 8.370546391 225903868 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 9.264462276 9.395723622 8.531130839 8.857238681 8.656533181 8.410011125 8.440734751 8.519993376 8.652452655 8.874692958 160917506 narG Nitrogen Denitrification uncultured bacterium 8.376080329 8.281068892 7.943905047 8.420569543 8.453119661 8.380636885 8.529455716 8.422766565 8.408602143 214031233 obgE Stress Radiation stress Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.804550256 7.717212413 7.514733863 7.389070822 7.868319349 7.860210161 7.841487502 7.806866767 7.746797497 28625435 CopA Metal Resistance Copper Trametes versicolor superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 8.479055024 9.01263353 8.528621346 8.438753548 8.263142194 8.548398166 8.465125296 8.337356665 8.450352426 8.661773973 38194126 Xamo Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 7.188752263 7.45746148 7.423048315 6.814869169 7.966982895 7.155833378 7.376234692 7.240498217 113529232 silC Metal Resistance Silver Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.25000596 8.29856146 8.409828061 8.284478407 8.234602863 8.564780631 8.478523521 8.384261694 8.569170803 8.640373295 8.349413637 160890886 ara Carbon cycling Carbon degradation Hemicellulose Bacteroides uniformis ATCC 8492 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides uniformis; 7.908871849 8.116139802 7.63225876 7.480567545 7.239908442 7.285834131 7.341669296 7.645628317 6.922279028 7.312200228 7.581564685 60594777 nplT Carbon cycling Carbon degradation Starch Laceyella sacchari 8.45063554 8.027581256 7.778987393 8.018585097 8.266219043 7.983539637 8.499187723 24375963 cytochrome Energy process Energy process Shewanella oneidensis MR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella oneidensis; 7.197759001 7.425881877 7.41250547 7.866845887 7.180277952 8.233028978 7.336411922 7.28742981 7.693657352 27380033 POBMO Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 7.717620672 7.81143881 7.34049198 7.275553331 7.403478097 8.012332842 7.374130971 7.252577917 7.260501916 116333062 cadBD Metal Resistance Cadmium Lactobacillus brevis ATCC 367 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus brevis; 8.131339423 8.052032811 7.952156256 7.767741114 7.875002948 7.942336096 7.779862793 7.717190316 8.122953478 196211848 grpE Stress Heat shock Geobacillus sp. G11MC16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.996952801 8.162762133 7.549561082 7.897983447 7.421411198 7.361155174 7.785357802 7.839856361 7.552207723 7.803528118 89097108 xylanase Carbon cycling Carbon degradation Hemicellulose Bacillus sp. NRRL B-14911 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.323639618 7.020649441 7.312912108 7.476722059 7.091525875 7.106272634 7.31313537 134095360 TehB Metal Resistance Tellurium Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 7.251448129 7.462359196 7.622788004 7.798859567 7.466350753 7.995433765 7.601086323 7.695892189 7.662135578 152989365 cytochrome Energy process Energy process Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.149527667 8.202979483 8.286408946 8.318040528 7.983364694 7.774865706 8.387114687 8.329813109 8.08027604 8.037773327 7.681340297 209875061 CopA Metal Resistance Copper Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 7.477200352 7.271112236 7.761929245 7.742066235 6.953717333 7.412730957 7.530723826 93358319 phtA Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.564673522 8.622779124 8.39978707 8.191607195 7.929120391 7.945877813 7.715687554 7.925467867 8.040304515 7.652835971 8.02464484 46202246 pstB Stress Phosphate limitation Magnetospirillum magnetotacticum MS-1 7.945437876 8.265935264 8.156619672 8.089449215 8.154625048 7.687843198 8.224207343 8.233837989 8.001151247 7.800375643 86749786 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris HaA2 9.242793883 9.014178461 9.345081003 8.530930498 8.512194015 8.533244952 148511824 Catechol Organic Remediation Aromatics Other aromatics Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.022263605 7.957406495 8.003671475 7.801913493 7.955742726 7.990257164 7.955315047 8.295039224 8.055335614 7.980356708 7.956392994 217974587 TehB Metal Resistance Tellurium Shewanella baltica OS223 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 7.358436682 7.669122453 108798423 CopA Metal Resistance Copper Mycobacterium sp. MCS 8.218663914 8.230353036 7.726525314 7.660456515 8.254642331 8.435517762 7.773024583 7.866833086 7.652899349 7.94955186 118000784 ureC Nitrogen Ammonification Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.041299946 8.40476313 7.599045437 7.614080493 7.880073067 7.399270413 7.21340186 7.716770034 7.421202542 7.562417801 108766827 fnr Stress Oxygen stress Rubrobacter xylanophilus DSM 9941 7.264866085 7.303183199 7.152618034 7.289440863 111019756 clpC Stress Protein stress Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.313386422 8.772208128 8.655040835 8.425303823 8.074057646 8.090244996 8.982234934 8.389866567 8.844343718 8.650921733 8.790549779 123962982 todF Organic Remediation Others Prochlorococcus marinus str. MIT 9303 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 7.052319161 7.118635977 7.292801104 7.384377625 7.262821261 7.616591708 7.171166459 7.180893797 7.055292869 22295836 sigma_24 Stress Sigma factors Thermosynechococcus elongatus BP-1 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Thermosynechococcus;species:Thermosynechococcus elongatus; 8.201449905 8.379324654 7.201101757 7.430707477 7.547017918 7.183305726 7.352084458 7.594243397 124514327 sigma_70 Stress Sigma factors Leptospirillum rubarum 9.069063258 9.148438495 8.39737849 8.248284016 8.286585131 8.288114157 7.893574335 8.269857326 8.231043917 8.214999854 8.33257042 219545576 CopA Metal Resistance Copper Candidatus Methanosphaerula palustris E1-9c superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;genus:Methanosphaerula;species:Methanosphaerula palustris; 7.789081952 7.794320511 7.392168916 7.866310478 7.970352544 7.738934069 8.018578339 7.809343903 32308003 narG Nitrogen Denitrification uncultured bacterium 7.832984684 7.143622006 7.277787831 7.064059015 7.453938055 7.58909957 7.335200474 7.594729158 6.941387722 169189159 atzC Organic Remediation Herbicides related compound Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 8.212460986 8.192008601 7.359593708 6.916966675 7.092639466 7.225414874 7.071795007 7.825927088 145221949 catB Organic Remediation Aromatics BTEX and related aromatics Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 7.771420194 7.553216771 7.638344081 7.800499007 196258782 fnr Stress Oxygen stress Cyanothece sp. PCC 7822 7.887476781 7.640731824 7.591258127 6.991872047 7.369600078 7.978263602 7.42027524 7.183912 7.691598024 145322504 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 7.209369088 7.298550913 7.234056382 7.070068723 83590524 proV Stress Osmotic stress Moorella thermoacetica ATCC 39073 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Moorella;species:Moorella thermoacetica; 7.878803968 8.233239231 7.700229997 7.884342184 7.658043072 7.513934393 7.761802062 7.91589634 7.836913147 7.685116597 7.552049205 171910598 clpC Stress Protein stress Verrucomicrobium spinosum DSM 4136 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Verrucomicrobium;species:Verrucomicrobium spinosum; 8.543674888 8.520621973 8.268049234 8.444410787 8.256379162 283103841 sigma_70 Stress Sigma factors Bulleidia extructa W1219 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichi;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Bulleidia;species:Bulleidia extructa; 7.555884825 7.63360381 6.915988835 7.589223964 224370266 Tet Antibiotic resistance other Desulfobacterium autotrophicum HRM2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium;species:Desulfobacterium autotrophicum; 7.724090056 7.639002152 7.652364069 7.306356842 7.458599832 7.704530917 7.435558477 7.43585677 7.27532645 254450743 AceB Carbon cycling Carbon degradation others Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 6.713310363 7.126321707 7.183495659 6.767650574 198040249 sigma_70 Stress Sigma factors Burkholderia cenocepacia J2315 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 7.833678306 8.025633551 8.623809937 8.80418299 8.430431183 8.643075336 8.412880039 8.167703687 145216205 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.175583315 8.082234533 7.564120941 7.513079712 7.58499659 7.922889862 7.981602539 7.823101956 8.337510647 91715600 pcc Carbon cycling Carbon fixation Shewanella denitrificans OS217 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella denitrificans; 7.101762228 6.92976316 7.402629266 6.917331435 6.918410454 7.550764989 7.115065138 6.89012458 89346266 ChrA Metal Resistance Chromium Rhodoferax ferrireducens DSM 15236 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 8.094090847 8.150577014 7.953390364 7.916813536 7.980909787 7.400970379 7.764552728 7.95739047 7.632281189 7.844599737 7.690598132 159039367 hrcA Stress Heat shock Salinispora arenicola CNS-205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 8.444985137 8.232691156 7.935672525 8.112009404 8.271699576 8.287768892 7.861985462 8.181769977 7.984525339 8.054796917 8.011677861 255062592 rubisco Carbon cycling Carbon fixation Nitrosomonas sp. AL212 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 8.46678759 8.066861823 7.776602478 8.082824736 8.529958759 8.800505425 8.422359601 8.520252253 8.503012144 8.518098673 8.809155977 91692846 nmoA Organic Remediation Aromatics Nitoaromatics Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.892614349 8.053861646 7.005932256 7.306943062 7.095616516 7.295556184 89346376 pstB Stress Phosphate limitation Rhodoferax ferrireducens T118 8.450373938 8.478715997 8.160586328 7.647003408 7.739255745 7.972218744 115256302 phenol_oxidase Carbon cycling Carbon degradation Lignin Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.931457112 8.262695289 8.039631533 7.941283824 7.690372943 8.006298358 8.238588577 8.20206207 8.111626188 8.038258421 8.010532877 190687701 pilin virulence pilin Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 7.797829653 8.055289746 7.588597142 7.436974008 7.210436766 7.171067479 7.315080296 7.836174812 7.425371984 7.170972074 7.309212814 5420039 bphF1 Organic Remediation Aromatics Polycyclic aromatics Streptomyces tendae 8.401892037 8.353261641 8.073395914 8.647084446 8.181883473 8.24991532 8.534245776 54309376 endochitinase Carbon cycling Carbon degradation Chitin Photobacterium profundum SS9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 8.383733386 8.147378393 8.163021565 7.607851096 8.075991737 7.866143284 7.9119892 8.289442815 7.824879457 253584885 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 8.025185364 8.304558928 7.931489045 7.794635732 7.835409978 7.872247629 7.852291114 8.116719611 7.830946089 8.202055861 7.762687603 40362785 nosZ Nitrogen Denitrification uncultured soil bacterium superkingdom:Bacteria; 7.224470228 7.202460331 7.477776299 7.553260292 7.174029008 7.342585956 7.448240173 109673722 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Campylobacter curvus 525.92 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter curvus; 8.551004443 8.47381738 7.921444712 7.818290956 7.90510647 7.994954116 7.858225047 7.903926005 7.814300744 8.270690809 104783570 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 7.827911444 7.745333157 8.02496614 7.427837759 7.830062445 7.754903611 7.633936681 7.801869284 7.534723661 283816194 sigma_38 Stress Sigma factors Spirosoma linguale DSM 74 8.193646014 8.26957701 8.185348563 7.694673564 7.666527525 7.933921983 7.945368448 7.810027007 7.588814239 7.616224849 7.702525803 225042189 sigma_70 Stress Sigma factors Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 7.101608205 7.15186919 7.408684174 7.101680272 7.013043436 7.56058229 7.569151466 7.249823516 7.234843622 119766150 TerC Metal Resistance Tellurium Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 7.413525402 7.932174425 7.04797397 7.288033151 77977575 tutFDG Organic Remediation Aromatics BTEX and related aromatics Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 7.837965557 7.75680134 7.617327097 8.028192727 7.772878551 7.992904783 7.99970738 114567418 hly virulence hemolysin Syntrophomonas wolfei subsp. wolfei str. Goettingen superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Syntrophomonadaceae;genus:Syntrophomonas;species:Syntrophomonas wolfei; 7.900256608 8.147585015 7.582997793 7.27391931 7.591748203 7.353982362 7.206993053 117959692 phenol_oxidase Carbon cycling Carbon degradation Lignin Ganoderma lucidum superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Ganodermataceae;genus:Ganoderma; 7.982918155 8.450987196 7.944393869 8.032909631 7.706121663 7.819747669 8.211517282 8.405511297 8.409987656 8.016269925 8.076491522 110621880 nifH Nitrogen Nitrogen fixation uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 7.327621345 7.321110527 7.213683455 7.193852299 7.105511767 7.580748933 7.161516135 7.200909511 7.353709535 93354990 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 7.298287626 7.423719043 7.484674101 7.589377471 7.064773034 7.795423765 7.44043124 7.389971735 7.763957492 184194779 tfdA Organic Remediation Aromatics Chlorinated aromatics Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.634454145 7.565201499 7.334968113 7.743645123 7.406980905 7.823170301 7.757890812 7.602774188 7.59007719 70673043 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.885777463 8.045140767 7.284018446 7.073172128 6.953469017 7.587920379 38505862 ArsC Metal Resistance Arsenic Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 8.236982496 8.00890393 7.507931631 7.59913191 7.435619872 7.260480278 7.870567577 7.866062752 7.641201232 7.542134252 7.566235699 110224950 gyrB other category gyrB Streptococcus anginosus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 7.786599697 8.189401546 6.894525429 6.92340201 73535242 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.000266618 8.140901173 7.928092055 7.370305307 7.334170872 7.266951778 7.075564318 7.936982485 7.291822258 7.246984895 7.470989348 32816263 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 8.105414547 8.456515932 7.424352096 7.314100759 7.344677122 7.016376152 7.50347336 7.791389157 7.777618773 7.640501379 7.650484117 157405915 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 7.731512457 7.68014307 7.45029685 7.454457015 7.748052441 7.814111699 7.560076941 7.442631541 7.342555764 171060969 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 8.087925647 8.33166709 8.004378736 8.863348399 8.463381428 8.682281964 8.170812997 7.895278538 8.231624634 206595076 gyrB other category gyrB Ralstonia solanacearum IPO1609 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 8.468874789 8.094444868 7.705103248 7.849460114 7.917160972 8.060354621 8.098673791 7.775435525 7.703096702 685212 glucoamylase Carbon cycling Carbon degradation Starch Athelia rolfsii superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Atheliales;family:Atheliaceae;genus:Athelia; 8.49201255 8.822642784 8.594585161 8.710070624 8.256712037 8.600457887 9.146333113 8.606938995 8.923513711 8.979127425 9.21350574 260770851 GroES Stress Heat shock Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 7.293663762 7.295371632 7.289171019 7.292108261 7.42126288 7.350197867 199597283 nplT Carbon cycling Carbon degradation Starch Lactobacillus rhamnosus HN001 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 8.514037774 8.292827264 7.563189634 7.930222617 8.305025006 8.559089799 7.626319919 8.618195579 7.967870645 8.008176592 8.473024832 163745039 gyrB other category gyrB Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 7.514641781 7.540732271 7.800373835 7.724585946 7.824971438 8.056117933 7.744311119 7.761842985 7.761843085 149783141 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.203809778 8.315952812 7.730666655 7.606768223 7.559373891 7.425854799 7.686733546 7.684059315 7.210492745 7.711021468 194537081 CopA Metal Resistance Copper Vibrio cholerae V51 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 8.769989477 8.227149825 8.148040759 8.564404504 9.023766859 8.404130241 8.729990971 8.340051354 8.209484607 8.717375232 109898503 amyA Carbon cycling Carbon degradation Starch Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 7.701037568 7.485873404 7.255025043 7.537258927 7.389387668 7.797294161 7.632933334 7.466293758 222110363 silC Metal Resistance Silver Diaphorobacter sp. TPSY superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax ebreus; 8.200448756 8.347950145 7.581261429 7.895638464 8.162458276 8.444317855 7.99878794 8.593950337 7.821793327 7.959202207 8.031452756 228275395 cap virulence capsule Capnocytophaga gingivalis ATCC 33624 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga gingivalis; 7.200581474 7.148246135 239934590 sigma_70 Stress Sigma factors uncultured Acidobacteria bacterium superkingdom:Bacteria;phylum:Acidobacteria; 7.471425623 7.424074681 7.642218313 7.270039878 7.406128426 7.766472057 7.528173869 7.42370007 7.440559217 218356380 bphA Organic Remediation Aromatics Polycyclic aromatics Escherichia fergusonii ATCC 35469 7.961454408 8.052877822 7.942893814 7.417086268 7.253538123 7.529585598 7.575802931 7.800163176 7.366930468 7.386935325 7.447166528 4584498 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.28179007 8.094722317 7.578679495 7.413578366 8.178815027 8.380415392 7.884462398 7.760413114 8.13001105 7.951262462 149810857 ureC Nitrogen Ammonification Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.748589013 7.37498812 7.491038874 8.029617216 7.840193065 7.913485102 8.116701534 8.014367026 197086873 cytochrome Energy process Energy process Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 7.20638512 7.634557662 7.448984086 7.649064252 6.589789209 7.285401172 7.231390494 7.459425269 85712570 oxyR Stress Oxygen stress Idiomarina baltica OS145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina baltica; 7.002546627 7.457358786 7.803414171 7.622690398 7.650729337 8.03347527 7.725529274 7.742153725 7.820799062 114538726 ArsC Metal Resistance Arsenic Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 8.248292247 8.225362165 7.813418651 7.953260874 7.895438436 7.967137218 7.826698154 8.101104851 8.269269395 8.157941288 7.785440633 218718935 BpH Organic Remediation Aromatics Aromatic carboxylic acid Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 7.886310907 8.182946241 8.123161566 8.420956863 8.0437194 7.548165935 8.365819433 7.607601464 7.846434943 7.856673668 8.338190272 207089099 SMR_antibiotics Antibiotic resistance transporter Nitrosococcus oceani AFC27 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 8.362427418 8.445472028 7.682163942 7.536549978 7.534666865 7.383025445 7.244130309 7.896484865 7.484675949 7.393708702 7.555202046 1899004 gyrB other category gyrB Shuttle vector pMDS20 8.295849495 8.400832236 8.241582374 8.27132164 8.179581938 8.404972242 8.272301428 8.47028209 8.401746869 8.643480883 7.97155996 89344550 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 7.844102104 7.98382423 7.318042479 7.189949501 7.620459709 7.732730264 7.175375738 7.982025044 7.477422962 7.499649507 7.419201428 77920269 sigma_70 Stress Sigma factors Pelobacter carbinolicus DSM 2380 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter carbinolicus; 7.892136754 7.544680334 7.605669455 7.603050596 7.457357257 8.195848943 7.166274742 7.676717593 7.553402076 66840889 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7.476323504 7.636830411 7.675846005 7.423152673 7.444493563 7.474994735 7.638964231 119386260 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 7.742170479 8.406124806 7.940976539 7.951792476 7.909226073 7.794381222 8.208906267 7.782439701 116741914 ahpC Stress Oxygen stress Listeria welshimeri serovar 6b str. SLCC5334 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria welshimeri; 7.945461777 8.025388886 7.270054918 7.551032842 7.675225782 7.003785437 7.203017919 7.051273663 7.436721631 209900611 AceB Carbon cycling Carbon degradation others Enterobacter cancerogenus ATCC 35316 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 7.009683324 7.523023251 7.926967936 8.066012924 7.415150488 8.133038316 7.41403272 7.392893931 8.10653714 145594225 gyrB other category gyrB Salinispora tropica CNB-440 7.374938321 7.58562149 7.837730249 7.876486436 7.668350586 7.897986169 7.794979047 8.108940633 120562233 proV Stress Osmotic stress Desulfovibrio vulgaris DP4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 7.930886503 8.316769626 7.813753474 8.125520763 7.816551662 7.390191919 8.240648142 7.697552989 7.874724127 7.751830365 8.008844959 222455472 amyA Carbon cycling Carbon degradation Starch Anaerocellum thermophilum DSM 6725 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Anaerocellum;species:Anaerocellum thermophilum; 7.912131497 7.988580094 7.122150566 6.860284344 6.945175654 6.749776783 7.471689352 182414366 phoB Stress Phosphate limitation Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 8.186318301 8.413393292 8.188986635 8.156527474 8.771312744 8.333484622 8.385548064 8.332038073 8.199659311 70992241 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 7.887407737 8.498892353 8.567946572 8.776559862 8.729589708 8.971781534 8.925596112 8.591666942 91685166 sox Sulphur Sulphur oxidation Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.387749978 7.330476523 7.852723264 7.917516571 7.447653847 8.384380313 7.345239551 7.613370975 7.73807908 224947212 bglH Stress Glucose limitation Corynebacterium matruchotii ATCC 33806 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium matruchotii; 8.476496753 8.743566137 8.28468031 8.295458708 8.345788315 8.2374962 8.505993253 8.150150038 8.342540207 8.343974417 8.492091628 148260906 chromium_resistance Bioleaching Metal Resistance Acidiphilium cryptum JF-5 8.247522752 8.625166404 8.317307865 8.190571177 8.17522692 8.409188505 8.46680165 8.601324048 8.585520966 8.29271258 8.063959419 68200982 TerD Metal Resistance Tellurium Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 7.779193181 8.090724467 6.973715638 6.952718918 84694758 badK Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8.25246539 7.974386098 7.838034458 7.645015641 7.337866947 7.462298757 7.732474961 7.581448062 7.667571778 227111777 SMR_antibiotics Antibiotic resistance transporter Pectobacterium carotovorum subsp. brasiliensis PBR1692 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 8.593656701 8.917651625 8.281179354 8.20865427 8.155690399 7.568548027 7.957161117 8.028417834 7.923620034 8.175585664 29341656 fnr Stress Oxygen stress Bacteroides thetaiotaomicron VPI-5482 7.400945474 7.019216622 7.061888008 6.718567733 7.603217809 116694861 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 7.870182634 8.344259815 7.408376965 7.128872011 7.349875825 7.218273463 7.874038697 6.76628005 7.10422084 256758771 pstC Stress Phosphate limitation Thiomonas intermedia K12 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas;species:Thiomonas intermedia; 7.918729686 8.252352904 7.619685778 7.499196292 7.315178118 7.563104512 7.256727421 8.04570897 7.213647538 7.113275208 7.445464166 89054579 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 7.700563722 8.329782402 8.267638349 8.662033341 7.474055822 8.899642777 8.017928297 7.942105419 7.838405871 229747392 Tet Antibiotic resistance other Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 8.43253989 8.409073947 7.850294013 8.24816849 8.574192197 8.857762186 7.905553204 8.816229945 8.103583071 7.895004957 8.287227523 114197034 nbaC Organic Remediation Aromatics Nitoaromatics Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 8.379615733 8.746620366 8.771926382 8.62153616 8.913684755 8.253794457 8.919912223 8.372020375 8.805002253 8.810045976 8.299156791 66046353 iro virulence Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 7.93528505 7.972766432 7.879644634 7.844596408 7.706957088 7.969916532 7.817346124 8.052131048 7.866198174 7.811091246 7.515873337 114740558 glnA Stress Nitrogen limitation Hyphomonas neptunium ATCC 15444 8.358737116 8.187357709 7.994436294 7.928514706 7.873561696 8.034461147 8.302209508 8.102273131 8.325613261 8.1572271 8.1305718 111026255 chnB Organic Remediation Other Hydrocarbons Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7.853552951 7.95583545 7.660546364 7.972504419 7.831347965 8.091012317 7.99449753 8.100782289 7.721533773 151362421 cellobiase Carbon cycling Carbon degradation Cellulose Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 8.357651913 8.085199592 8.012378656 8.152966983 8.279245435 8.1501709 8.51548587 8.05855247 8.413369239 8.423474336 8.423245696 145304987 TerC Metal Resistance Tellurium Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 7.435745941 7.917523195 8.156811759 7.845331293 8.03577025 8.343493239 7.975301098 7.99795852 7.803972392 33564129 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Bordetella pertussis Tohama I superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella pertussis; 7.994243673 8.205145757 8.292206432 8.485985817 7.777464753 8.210916855 8.229425831 8.193254555 8.21436445 7.843438276 7321241 narH Stress Oxygen limitation Pseudomonas sp. Ki-1z superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.1114647 8.677806056 8.534281927 8.60663246 8.456048582 8.515232565 8.875383863 8.605462827 8.592387489 8.4729537 8.287484556 281199357 sigma_70 Stress Sigma factors Raphidiopsis brookii D9 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Raphidiopsis;species:Raphidiopsis brookii; 8.259536668 8.237547463 7.527099843 7.708918668 7.694854607 7.866319667 7.862982332 7.2067102 7.976697126 8.104803567 7.892385816 13898437 dsrA Sulphur sulfite reductase uncultured phenanthrene mineralizing bacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 7.850360096 7.395278308 7.698846509 7.655134605 7.289446381 7.332749809 7.224710738 7.615158474 193201321 lysin Bacteria phage LYSIS Enterobacteria phage EcoDS1 order:Caudovirales;family:Podoviridae;genus:T7-like viruses; 8.181555479 8.765061382 7.711062359 7.674464483 7.716552483 7.729447936 7.704275468 7.747118603 7.5924365 7.405878309 7.931861344 258531320 iro virulence Pantoea sp. At-9b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 8.177758296 8.171029353 7.486957805 7.724863969 7.741985997 7.985897601 7.780343643 7.86611138 7.915277984 7.876967578 255324534 amyA Carbon cycling Carbon degradation Starch Corynebacterium tuberculostearicum SK141 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium tuberculostearicum; 8.334294765 8.167559829 8.272821649 8.439218508 8.175189563 7.783694082 8.466178655 8.001781485 8.296763362 8.555641119 8.265143064 145298254 phoB Stress Phosphate limitation Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 7.539179591 7.399786251 7.070865144 7.306369302 7.42168234 429026 endochitinase Carbon cycling Carbon degradation Chitin Aphanocladium album superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;genus:Aphanocladium; 8.105991012 7.890422093 7.930283615 8.308268013 8.230941609 8.217186894 8.497448253 7.999525746 84388021 fnr Stress Oxygen stress Oceanicola batsensis HTCC2597 8.086376023 8.248301246 8.023687786 8.10975093 8.574053408 8.108594925 8.650005673 8.507266173 8.234847974 255297700 sigma_70 Stress Sigma factors Corynebacterium tuberculostearicum SK141 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium tuberculostearicum; 7.957529355 7.464946972 7.795072728 8.217202262 7.45227321 8.001109536 7.524412525 7.534012476 7.708829467 219862047 sigma_70 Stress Sigma factors Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 7.600589577 8.01885882 7.83847875 7.685073569 7.927331613 7.291483381 7.641415342 7.690226515 117609202 dsrB Sulphur sulfite reductase Magnetococcus sp. MC-1 7.90981174 7.634090933 7.788572158 7.960197526 8.2437476 8.283822042 8.137924259 7.737895798 iegAssA17 AssA Carbon cycling Carbon degradation Others 7.0393584 6.933853862 7.20492545 6.702191895 7.506803566 222082607 nmoA Organic Remediation Aromatics Nitoaromatics Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.320569228 8.376592234 7.988927551 7.823358094 8.18038529 7.972926238 7.930153476 7.584997691 37362329 nagI Organic Remediation Aromatics Aromatic carboxylic acid Pseudaminobacter salicylatoxidans 8.399862253 8.103069865 7.546656929 7.662765245 8.050141073 8.095361596 8.062517654 7.827041142 8.165943364 77359278 pstB Stress Phosphate limitation Pseudoalteromonas haloplanktis TAC125 7.806132315 8.122647982 148266119 nifH Nitrogen Nitrogen fixation Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 7.641549388 7.625862801 7.414295011 7.469137251 7.679185886 7.652371087 7.641515885 7.430019667 7.605047776 162952576 ppx Phosphorus Phosphorus utilization Renibacterium salmoninarum ATCC 33209 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Renibacterium;species:Renibacterium salmoninarum; 7.530596233 7.789657632 7.577439457 7.616228074 7.371895377 7.750736924 7.847920938 7.70614896 157910973 fnr Stress Oxygen stress Dinoroseobacter shibae DFL 12 8.179420568 8.079370511 7.789319963 7.738448562 8.027204712 8.07354779 7.793536477 7.772960824 7.656217816 206679783 nahF Organic Remediation Aromatics Polycyclic aromatics Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.431156495 8.336264836 8.028439866 7.857867213 8.131158303 8.133737376 8.107116739 8.273298278 8.205816253 8.280589992 8.336466244 187477036 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 8.033461451 8.243292056 7.326238815 7.021215332 7.338543184 7.170612844 7.212638732 209515045 glnA Stress Nitrogen limitation Burkholderia sp. H160 7.974385766 8.024766118 8.131383801 8.031383221 8.395378013 8.564268619 8.32433683 8.054825185 8.186714678 223457476 CadA Metal Resistance Cadmium Prevotella copri DSM 18205 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella copri; 7.525892449 7.468428036 7.42911979 6.82546414 7.050389144 7.641172174 7.209409239 7.10403732 7.406485251 256769358 sigma_24 Stress Sigma factors Streptomyces sp. C superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.285778782 8.2129753 8.222199312 8.599769641 8.309574647 7.858883851 7.990442563 8.209439025 85823337 ChrA Metal Resistance Chromium Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.100332733 8.16140901 7.389764194 6.943129555 7.927695068 7.669036162 6.925402662 7.353860371 7.454036621 7.357570279 225386318 sigma_24 Stress Sigma factors Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 7.600234127 7.661728044 7.708401102 7.44682722 7.826820444 7.731602826 7.758348967 7.677331096 7.6823431 148868964 phoB Stress Phosphate limitation Vibrio harveyi HY01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 7.295735416 7.541676099 7.718246546 7.335886746 7.527063615 7.626055681 7.490627255 7.51818806 70733596 cytochrome Energy process Energy process Pseudomonas fluorescens Pf-5 7.441287151 7.475832512 7.166805296 7.343900112 7.324421064 7.757470176 7.104610461 7.366225291 7.672361912 215430513 cydB Stress Oxygen limitation Mycobacterium tuberculosis EAS054 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 7.711774507 7.833909683 7.269880243 7.461124258 83316834 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.966928125 8.31221315 7.463649995 7.273802432 7.374875919 6.866028126 6.898154493 7.641318424 7.204488994 7.287361305 7.28131692 71383768 nasA Nitrogen Assimilatory N reduction Tolypothrix sp. PCC 7101 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Microchaetaceae;genus:Tolypothrix; 8.038446794 8.2209455 7.764245949 7.678984392 7.400922419 7.786098243 7.76500131 8.06454576 7.63640049 7.785717585 7.798701444 126716940 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.957571818 8.394799531 98976420 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sphingopyxis alaskensis RB2256 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 8.637863073 8.382982416 8.282039954 8.381975437 8.781779291 8.774216723 8.698027251 8.745338135 8.578383972 8.566212637 8.767043835 194014659 alkK Organic Remediation Others Bacillus pumilus ATCC 7061 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pumilus; 7.929002406 8.273184513 8.139023035 7.923378065 7.686030754 7.608751994 8.208764371 7.974822781 8.131804112 8.179220507 8.379425635 120590559 endochitinase Carbon cycling Carbon degradation Chitin Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 8.005284593 7.774466181 7.777101618 7.771467762 7.899209072 7.999975704 7.909388885 7.983196178 8.040551122 251799166 nplT Carbon cycling Carbon degradation Starch Paenibacillus sp. JDR-2 8.333418214 8.455507373 7.825573686 8.030333853 8.184154983 8.426230146 7.787023607 7.797713977 7.850420876 7.937953395 241462301 dsrB Sulphur sulfite reductase Allochromatium vinosum DSM 180 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 7.800554752 7.174721112 8.094031226 7.35863086 7.443100673 7.546001993 247539147 SMR_antibiotics Antibiotic resistance transporter Dickeya zeae Ech1591 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 8.693013771 8.880312204 7.49898475 8.141593691 7.939207081 7.456742411 7.678714978 7.755579071 7.838617322 8.373331392 218510661 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.971103771 8.131724144 7.947584914 7.831302464 7.744839158 7.716978228 7.716367862 7.886522343 85109288 tfdA Organic Remediation Aromatics Chlorinated aromatics Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 8.398120835 8.381641862 7.914164026 8.082160814 8.639794823 8.758059541 8.391338156 8.80318883 8.213264631 7.922951033 8.079959418 91716857 silP Metal Resistance Silver Shewanella denitrificans OS217 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella denitrificans; 8.007806511 8.340919924 7.360558481 7.322602693 7.048953975 7.566445838 7.515044195 7.060875989 7.413805532 27762476 xylC Organic Remediation Aromatics BTEX and related aromatics Pseudomonas putida 7.362651371 7.442225938 7.400873894 7.558173307 7.54010761 7.614098356 7.486834967 7.449428694 7.681323163 219545405 pstA Stress Phosphate limitation Methanosphaerula palustris E1-9c 7.457671845 7.556069162 7.509300855 7.611905463 7.564117354 7.993866795 7.685992541 7.572527547 7.331935358 259505974 hly virulence hemolysin Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 8.225823708 8.698277778 8.264717068 8.114514892 7.803539512 7.803634258 8.12898648 8.392175853 7.939700582 8.04256006 8.141500619 217335984 pstB Stress Phosphate limitation Dictyoglomus turgidum DSM 6724 8.283958577 7.898955169 7.798648388 7.77032781 7.63334864 7.673095943 8.061758068 110630582 nifH Nitrogen Nitrogen fixation uncultured soil bacterium superkingdom:Bacteria; 7.871845854 8.16094972 7.226557033 7.234422411 7.376165476 7.132465449 6.89882359 7.713489921 7.250052988 7.178914767 7.158895138 33415333 nasA Nitrogen Assimilatory N reduction Rhodobacter capsulatus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 8.922492925 8.722465736 9.207482016 8.92627223 8.547134603 9.098649968 8.975110876 8.743181621 8.823682406 8.552859905 8.674231489 209401692 narG Nitrogen Denitrification uncultured bacterium 8.157807941 8.330892462 7.664867802 7.68179398 7.926167565 8.068530909 7.885503888 8.052821767 7.822924734 7.947092077 8.046646292 15805432 pulA Carbon cycling Carbon degradation Starch Deinococcus radiodurans R1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 8.154171909 8.573172217 7.882709365 7.695182327 7.846533291 7.571793432 8.185510952 8.070758543 7.61954561 7.604361042 7.794353248 83404792 nirS Nitrogen Denitrification uncultured organism 7.283795764 7.332387077 7.276965185 7.314285391 7.545917789 7.38614329 7.462908298 7.7977816 166865142 dsrB Sulphur sulfite reductase uncultured Desulfobacteraceae bacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae; 8.43976431 8.61830804 8.154638681 7.84821756 7.526551849 7.872567709 7.938651299 7.838792756 8.08456792 71066198 AceB Carbon cycling Carbon degradation others Psychrobacter arcticus 273-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter arcticus; 7.694677698 7.822026293 7.905964075 8.053505102 7.906941406 8.128805757 7.775349733 7.894863992 7.807535412 67524167 ara_fungi Carbon cycling Carbon degradation Hemicellulose Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.452130004 7.570758139 7.225365312 7.430614751 7.432285769 7.927406611 7.390438762 7.562424294 161166389 nagG Organic Remediation Aromatics Aromatic carboxylic acid Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 7.868245555 7.646980749 7.439758997 7.306526558 7.4922265 7.866148076 7.480820927 7.53527862 7.367849706 68547343 glucoamylase Carbon cycling Carbon degradation Starch Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 8.012954029 7.863140643 7.644889043 7.312840258 8.257507355 8.023279781 8.133386315 7.661004998 8.143831845 214042889 nagG Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.841338785 8.791398067 9.004395205 9.023614485 8.624902452 9.262476858 9.036573194 8.947158932 91690046 tphA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.580102899 7.666274784 7.89627644 7.994436365 7.819896526 7.864469591 7.967511135 8.041532623 17743201 trzA Organic Remediation Herbicides related compound Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.476426021 8.807830738 8.791134979 8.058609309 8.73069951 8.156653685 8.624344715 8.673880904 8.685590639 239908522 pstC Stress Phosphate limitation Desulfovibrio magneticus RS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio magneticus; 7.789974741 7.695488391 7.371552931 7.614545825 7.87888423 8.036638772 7.593685376 7.468493575 7.327563254 225793943 obgE Stress Radiation stress Acidobacterium capsulatum ATCC 51196 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteria;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 7.984415679 8.195849595 8.253819067 8.018074382 7.82031571 7.849153691 8.261861959 8.077725242 8.103211839 7.82371653 8.155125038 15897255 thioredoxin Bioleaching Sulphur Sulfolobus solfataricus P2 7.747650358 7.949724436 7.190656437 7.137140905 190687202 SMR_antibiotics Antibiotic resistance transporter Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 7.791804151 8.21673962 7.912203891 7.790295422 8.092769932 8.372249295 8.122201188 8.100270893 7.875634426 86574498 sox Sulphur Sulphur oxidation Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.208148116 7.199561515 7.24865402 7.066130749 7.127986309 7.41408299 7.174412424 600813 nitA Organic Remediation Aromatics Other aromatics Saccharomyces cerevisiae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Saccharomyces; 7.761824542 7.71726121 7.341724554 7.287213015 7.45946457 7.691269326 7.299030625 7.600899268 118016698 phn Organic Remediation Herbicides related compound Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 8.097643303 8.380838535 8.016461651 8.044614751 7.826394881 8.068598788 8.112945317 8.185999744 8.07316144 7.580073876 8.027660904 134301030 narI Stress Oxygen limitation Desulfotomaculum reducens MI-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum reducens; 7.406998383 7.555088871 7.499661995 7.354741973 7.746440496 7.343636815 82410750 arcB Stress Oxygen limitation Nitrosospira multiformis ATCC 25196 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira;species:Nitrosospira multiformis; 8.394873272 8.369772441 8.192807071 8.144955771 7.928725416 7.858623573 7.910884384 7.908850516 7.898683739 8.002105971 46446383 type_III_secretion virulence secretion Candidatus Protochlamydia amoebophila UWE25 superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Parachlamydiaceae;genus:Candidatus Protochlamydia;species:Candidatus Protochlamydia amoebophila; 7.407342801 7.247551281 7.27931819 6.665343963 7.4865512 7.190883691 7.094713389 85693769 ArsC Metal Resistance Arsenic Idiomarina baltica OS145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina baltica; 6.924738692 7.485659202 6.736491324 7.283354658 224537334 ara Carbon cycling Carbon degradation Hemicellulose Bacteroides cellulosilyticus DSM 14838 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 7.342323056 7.312684686 168701488 pstC Stress Phosphate limitation Gemmata obscuriglobus UQM 2246 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata;species:Gemmata obscuriglobus; 9.765284226 9.691904431 9.044471027 8.695615108 8.682680978 551685 hdnO Organic Remediation Aromatics Heterocyclic aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8.220208735 8.282193948 8.148490596 8.253086741 8.533479734 7.899112817 8.677491999 8.32325211 7.94169086 229790702 sigma_70 Stress Sigma factors Abiotrophia defectiva ATCC 49176 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Aerococcaceae;genus:Abiotrophia;species:Abiotrophia defectiva; 7.265636191 7.290812786 7.589389121 7.230112699 7.158076515 7.669542387 7.086710309 7.423308438 56680689 nirS Nitrogen Denitrification Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 8.185714864 8.235056657 8.211510248 8.209408516 8.15861224 7.62886978 8.04860629 8.169205585 7.858612255 7.868965306 8.23049322 39942126 pheA Organic Remediation Aromatics Other aromatics Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 6.883964656 7.21179926 7.280655553 7.490799196 193226061 Catechol Organic Remediation Aromatics Other aromatics Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 8.710922416 8.318738305 8.118686113 8.625058856 8.533014472 8.631194756 8.27225721 8.09843751 8.155834452 113476893 clpC Stress Protein stress Trichodesmium erythraeum IMS101 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Trichodesmium;species:Trichodesmium erythraeum; 8.533503233 8.761404174 7.706990437 7.666559284 7.701679965 7.622995209 7.304778522 7.497428409 7.377313633 7.819762129 71909448 sigma_32 Stress Sigma factors Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 8.079763962 8.180176778 7.497774886 7.72832342 7.72464917 7.69424285 7.166564229 7.66350602 7.572337895 7.499963416 7.341113354 37955600 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.881563434 8.030609329 7.378060255 7.219005816 7.335899448 7.077327262 7.072900833 7.593660746 7.177083426 7.083979569 7.28490761 182679511 nmoA Organic Remediation Aromatics Nitoaromatics Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 7.509405658 7.667128472 7.564594612 7.817602747 8.131059332 7.851000871 7.631126615 7.447198049 153855112 CopA Metal Resistance Copper Dorea longicatena DSM 13814 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Dorea;species:Dorea longicatena; 7.776592658 7.079675803 7.943966847 8.513239925 7.689436228 8.602517244 7.98712389 8.279817201 8.235385102 77460911 cytochrome Energy process Energy process Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.658928372 7.375250531 7.076810757 7.428846679 7.628672199 7.72251125 7.766754217 7.465877071 158304906 glnA Stress Nitrogen limitation Acaryochloris marina MBIC11017 8.094647719 8.411992532 7.812096715 7.638515112 7.665357605 7.378190871 7.390030456 8.016827242 7.674353353 7.706164906 7.958382737 283577735 sigma_70 Stress Sigma factors Rhodopseudomonas palustris DX-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.458771492 8.012306338 8.500963195 8.113836953 8.235219492 8.144080142 8.144655913 121495614 narG Nitrogen Denitrification uncultured bacterium 7.430643044 7.670286139 7.642386593 7.309788068 7.615785679 7.463661745 7.752046321 7.599751653 7.616880158 214044672 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.150368438 8.010068903 8.195941032 8.337184211 8.147508143 8.526777003 7.739883239 7.884611676 7.755187084 111020358 ArsC Metal Resistance Arsenic Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.194318144 8.151647678 8.092121262 8.179776968 8.044935451 7.965119033 8.423744239 8.477520243 8.101989697 8.105775534 90020657 obgE Stress Radiation stress Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 8.139602475 8.291814955 7.835683389 7.336013786 7.39923533 6.954727612 7.697749222 7.24995786 7.765708612 219948696 phn Organic Remediation Herbicides related compound Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 8.447733864 8.671102507 8.005328172 8.190869835 8.024625112 7.67095768 8.260148264 8.125383036 8.199432769 8.234619946 3136051 GroES Stress Heat shock Schizosaccharomyces pombe superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Schizosaccharomycetes;order:Schizosaccharomycetales;family:Schizosaccharomycetaceae;genus:Schizosaccharomyces; 8.135157257 8.465191031 7.691262717 7.453642249 7.709018394 7.382092987 7.165062085 7.660294896 7.505413393 7.440804961 84517127 HBH Organic Remediation Aromatics BTEX and related aromatics Loktanella vestfoldensis SKA53 7.251037318 7.695877334 7.616483523 7.58442295 7.999654719 7.8357885 7.981297133 8.14694577 7.481574727 125497700 pstB Stress Phosphate limitation Streptococcus sanguinis SK36 7.291522916 7.933838556 7.046211926 7.785026128 157316211 pstC Stress Phosphate limitation Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 7.608766988 7.226032562 7.408944255 82618395 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.996543465 8.067909558 8.240824988 8.261744626 8.35305148 8.141128026 8.736014941 8.291513995 8.477797876 8.464924921 8.470396935 114561368 cytochrome Energy process Energy process Shewanella frigidimarina NCIMB 400 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella frigidimarina; 7.257337424 7.07384174 7.41442813 7.046896385 7.100767738 167648370 fnr Stress Oxygen stress Caulobacter sp. K31 8.706484349 8.806268789 8.310516236 7.616039039 8.21400472 8.58763465 8.256188468 8.45712693 8.278218241 8.182708924 8.221419575 157961957 pimF Organic Remediation Aromatics Aromatic carboxylic acid Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 8.942603123 8.944794334 7.907696821 7.93308471 7.860026506 7.849222392 7.862033623 7.720128301 8.039542169 7.867072121 8.157567083 68135529 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.30340338 8.327367943 7.92332937 7.803490734 7.971048059 7.882311055 7.880096232 7.9495147 7.884452506 7.811384715 8.030060563 254419172 narH Stress Oxygen limitation Brevundimonas sp. BAL3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas; 7.875333007 7.989224512 8.229193341 8.617639156 8.264595278 8.103951364 7.901719212 8.017682757 8.011066477 219667303 akbF Organic Remediation Aromatics BTEX and related aromatics Desulfitobacterium hafniense DCB-2 7.386467705 7.215085649 62426149 pcaG Organic Remediation Aromatics Other aromatics Brevibacterium linens BL2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium linens; 6.977879692 7.166920358 7.436059529 7.393531017 6.756839074 7.562828552 7.278295214 7.282531276 7.546182795 209494259 gyrB other category gyrB Arthrospira maxima CS-328 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira maxima; 8.391684085 8.42594398 7.831437711 7.575863236 7.632446581 7.783020637 7.493062617 8.270636399 7.928262373 7.533078188 7.885820373 91777275 amyA Carbon cycling Carbon degradation Starch Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.059115812 8.490155283 7.959409951 8.017183316 7.985730637 8.093569431 7.997752256 8.133183431 8.092959622 7.418694274 15788921 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.952754537 7.937718385 8.023637151 8.10443525 7.786209502 7.734591746 7.811005579 7.540567446 166406453 nirK Nitrogen Denitrification Azospirillum brasilense superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum; 7.777722883 7.675627869 8.277923524 8.291852238 7.848443602 8.34173017 7.766312582 8.217681563 7.917252247 52548862 mcrA Carbon cycling Methane Methane production uncultured archaeon GZfos19C7 superkingdom:Archaea; 8.203144 8.222597099 7.748822759 7.521741888 7.591237673 7.607617916 7.498006586 7.846628474 7.470816092 7.286409354 7.720341049 5851792 pheA Organic Remediation Aromatics Other aromatics Ralstonia sp. KN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 8.090215107 8.381509594 8.111353567 8.145827903 7.746889464 7.931677723 8.01865283 8.169456648 8.180646488 8.165048926 8.555479685 154250622 alkH Organic Remediation Other Hydrocarbons Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 8.276784365 8.410157941 7.769511821 7.879018686 8.11855197 7.895075994 7.737713219 7.869728367 8.068539226 7.983620235 37726835 dsrB Sulphur sulfite reductase uncultured prokaryote 7.560123476 7.724201517 7.916957584 7.804909078 7.270788117 7.800922933 7.721909706 7.593104507 7.39993059 66045451 nmoA Organic Remediation Aromatics Nitoaromatics Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 7.24937239 7.235044573 6.966496906 7.203594992 7.724979078 7.181386324 7.410290412 119951106 pstB Stress Phosphate limitation Arthrobacter aurescens TC1 8.187670704 8.074648338 7.677253877 7.659494887 8.200370814 8.342171135 7.843591144 7.894447864 8.00002842 7.756860677 153807748 sigma_24 Stress Sigma factors Bacteroides caccae ATCC 43185 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides caccae; 7.428483588 8.259628321 8.188861866 8.312060256 7.893989678 8.348280093 7.889710609 8.115967237 7.826859814 237756239 obgE Stress Radiation stress Sulfurihydrogenibium yellowstonense SS-5 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Hydrogenothermaceae;genus:Sulfurihydrogenibium;species:Sulfurihydrogenibium yellowstonense; 7.664025956 8.029172386 7.200589213 6.798923644 15807853 ppx Phosphorus Phosphorus utilization Deinococcus radiodurans R1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 7.608043354 7.890388871 8.021335328 8.238110009 8.134739008 8.036671439 8.413400948 8.593772695 8.223342192 163749051 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Shewanella benthica KT99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella benthica; 7.758351623 7.646487223 7.355671765 7.491761486 7.887629085 7.77752154 7.630165956 7.452701958 7.461462846 83375090 ChrA Metal Resistance Chromium Rhodobacter sphaeroides ATCC 17029 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 8.297688488 8.37949137 8.207117649 8.26472505 8.318237445 8.276052969 8.31591835 8.011624726 7.523038893 39934441 sox Sulphur Sulphur oxidation Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.981026451 8.170443472 8.579987786 8.152834348 8.394469907 8.275839259 7.984237072 8.406837693 8.009066374 145316842 phn Organic Remediation Herbicides related compound Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 8.315525582 8.280580137 8.012613965 8.01865705 8.066540624 7.872082386 7.942620513 7.669214416 8.007621118 8.08903632 115254396 nmoA Organic Remediation Aromatics Nitoaromatics Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.053459518 8.115190731 7.474369648 7.385066076 7.19721002 7.351313591 7.477841857 22449969 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.665509307 7.450970534 7.471749672 7.243758854 7.301891327 7.727300515 7.514518303 7.300350909 7.635668158 213970171 TerD Metal Resistance Tellurium Pseudomonas syringae pv. tomato T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 7.741596494 7.716818546 7.753501713 7.769465029 7.985762716 7.967145136 7.966332043 7.936998368 7.613846681 125714064 hrcA Stress Heat shock Clostridium thermocellum ATCC 27405 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 8.004923714 8.415167595 7.391829259 7.63414147 7.461974686 7.366398044 6.73431352 7.65041794 7.424313467 7.362122674 7.473237486 126035161 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.881794238 7.749608132 7.181981213 7.778822979 7.590193426 7.903724162 7.683340932 7.303152612 260892018 sigma_24 Stress Sigma factors Ammonifex degensii KC4 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Ammonifex;species:Ammonifex degensii; 7.261237385 7.397630443 37651513 helicase_family_4 Bacteria phage REPLICATION Aeromonas phage 44RR2.8t 7.427182582 6.854940529 260588778 hly virulence hemolysin Blautia hansenii DSM 20583 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Blautia;species:Blautia hansenii; 7.234445833 6.962516278 7.151014846 7.031371832 6.517123266 7.300010518 84043049 pcaG Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 8.340382057 7.720020909 7.850146308 8.012456782 8.475301401 8.252141936 7.952343723 8.162270403 118424485 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.026403963 7.114953265 7.308361335 6.880676266 6.840346937 7.096413999 197625877 ppx Phosphorus Phosphorus utilization Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 8.246035162 8.413659104 8.669549179 8.513441221 8.526480937 8.224557451 8.402430441 8.424882603 8.644011962 8.787576947 8.015355587 67917082 CopA Metal Resistance Copper Clostridium thermocellum ATCC 27405 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 7.864913951 8.284884754 8.487877659 7.867368337 8.368397437 8.002195029 8.082243778 8.309190654 8.006879526 38427006 narG Nitrogen Denitrification uncultured bacterium 8.424885097 7.983444475 7.652682779 7.457595456 7.656522847 7.932758916 7.828021757 8.091913665 7.768466185 7.731084185 8.066361637 89512376 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.260263864 7.162142809 7.291372375 7.359098743 94470931 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.737969362 8.057078168 8.186019159 7.926150107 8.492613118 7.790101043 7.947650737 7.370249996 256362391 hrcA Stress Heat shock Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 8.043221744 8.096146875 8.448804128 8.705123048 8.24260156 8.508356242 8.286194509 8.244963854 8.289807612 117608733 ahpC Stress Oxygen stress Magnetococcus sp. MC-1 superkingdom:Bacteria;phylum:Proteobacteria;genus:Magnetococcus; 8.063209453 8.439436025 7.59146458 7.487593911 7.612828337 7.406080431 7.464664866 7.276228553 7.677040481 145563366 pilin virulence pilin Shewanella putrefaciens CN-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella putrefaciens; 7.75268005 7.51409868 7.401192568 7.34293041 7.429852356 7.82561343 7.476526147 7.489707479 7.610677741 117608946 phoB Stress Phosphate limitation Magnetococcus sp. MC-1 superkingdom:Bacteria;phylum:Proteobacteria;genus:Magnetococcus; 8.169613521 8.499901047 8.024156479 7.773652344 7.69767323 7.521598774 7.938475476 7.889920371 7.705451094 8.118242441 6460551 TerD Metal Resistance Tellurium Deinococcus radiodurans R1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 8.221001704 8.106782526 7.254937289 7.539518166 7.671920695 7.738668899 7.937991953 7.057968769 7.427859145 7.413658978 177842857 obgE Stress Radiation stress Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 8.198008666 8.0485113 7.917168698 8.084643429 7.746367442 8.547716724 8.071860406 7.768110648 8.01259991 151585277 TehB Metal Resistance Tellurium Halorubrum lacusprofundi ATCC 49239 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 8.131864967 8.429876627 7.185296027 7.624568604 7.486054731 7.233602252 7.084481332 7.433148131 186473312 MFS_antibiotic Antibiotic resistance transporter Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.176195376 8.083751606 7.984426697 8.206372678 8.499694332 8.488008536 8.56538352 8.130522206 8.405378248 85835814 amyA Carbon cycling Carbon degradation Starch Vibrio sp. MED222 8.113378882 8.139072713 8.127624538 8.311617409 8.094848154 7.836865234 8.448513041 8.211034037 8.230018743 8.073295745 8.354526933 187478848 pilin virulence pilin Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 8.528246281 8.588189148 8.554895644 8.676369318 8.711924276 8.581466615 8.74057355 8.610151518 8.755125522 145322162 cbdA Organic Remediation Aromatics Chlorinated aromatics Novosphingobium aromaticivorans DSM 12444 8.589649046 8.402554487 7.732828528 7.909067621 7.72159069 7.570006733 7.996467484 7.93354943 7.808471791 32443026 NiR Nitrogen Assimilatory N reduction Rhodopirellula baltica SH 1 7.282249119 7.378257124 7.7309766 7.525014533 7.630276344 7.865907568 7.645067455 7.748413621 7.418537071 119456317 grpE Stress Heat shock Lyngbya sp. PCC 8106 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Lyngbya; 7.029870567 6.979448991 7.480750475 6.977304105 7.688177299 6.89696118 6.981747668 7.272390309 126437466 pstC Stress Phosphate limitation Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.011798547 8.174335415 7.982843768 7.789910499 8.292277233 8.238741963 8.214265037 7.823909465 256580917 obgE Stress Radiation stress Capnocytophaga ochracea DSM 7271 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga ochracea; 8.079533698 8.205235924 8.243290977 7.932219627 8.207999561 7.568174841 8.326958578 7.762214543 7.93407683 7.821502138 7.540244366 157321441 vip virulence virulence protein Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 9.175614426 9.078046487 9.417247543 9.476453339 9.428555562 9.223290028 9.65661139 9.35166413 9.629037457 9.822436597 197210301 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.280489653 7.216202397 7.504059535 7.727420824 6.969185574 187715333 bphA Organic Remediation Aromatics Polycyclic aromatics Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8.114137453 8.094797826 7.914569667 8.004569958 8.000879926 8.188024311 8.447902752 8.350879269 8.424544404 8.159374501 8.293225177 10173188 ChrA Metal Resistance Chromium Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 7.921001232 8.123076284 7.17648491 7.326563126 170027519 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.97480954 7.75863359 7.520651702 8.264883129 8.039887822 7.919797798 7.865476009 7.785287414 7.801860897 153006886 ureC Nitrogen Ammonification Anaeromyxobacter sp. Fw109-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 8.961242631 8.927075203 8.747223959 8.535413302 8.475859961 8.398719059 8.520865217 8.355497774 8.535442408 8.565192952 8.546502051 88797930 endochitinase Carbon cycling Carbon degradation Chitin Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 6.978553117 7.288539637 6.965764279 7.771636619 221230244 obgE Stress Radiation stress Mycobacterium leprae Br4923 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium leprae; 7.593626031 7.874693454 8.204160686 8.533016536 8.233147742 8.465909435 7.906816946 7.876337689 7.870572891 19909665 gyrB other category gyrB Erythrobacter sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 7.539764761 7.227645406 7.071580864 7.122416784 7.633413142 7.189446365 7.555502372 7.666970907 114707982 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 7.223236884 7.415301368 7.379493255 6.865794135 7.696683342 74038430 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.138032068 7.412347469 7.627037861 7.258898743 7.017817534 7.082337322 7.111815571 7.355086531 237510540 ahpF Stress Oxygen stress Burkholderia pseudomallei MSHR346 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 7.827313818 7.534764947 7.52988726 7.708259828 7.716640181 8.179269205 7.546985038 7.620670932 251793092 obgE Stress Radiation stress Aggregatibacter aphrophilus NJ8700 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Aggregatibacter;species:Aggregatibacter aphrophilus; 7.537352798 7.244605056 7.572622914 7.164939809 7.097551854 119715630 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 7.500781547 7.847535263 7.810578135 7.803881233 7.803929419 7.694874936 8.281942517 8.182621861 8.046639847 90204012 chnB Organic Remediation Other Hydrocarbons Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.141099521 8.312962194 8.095315504 7.851988584 7.710680515 7.549126981 8.047620962 8.194370743 8.03029111 8.08043357 162281368 obgE Stress Radiation stress Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 7.991687119 8.244398 7.843199992 7.528071537 8.154843111 8.279913691 8.227927143 8.331112423 8.051368339 8.187912651 8.121626135 148829422 ArsC Metal Resistance Arsenic Erythrobacter sp. SD-21 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 7.842148901 8.778802367 8.657765505 9.218110226 8.323266924 9.030261325 8.423453685 8.458113857 8.546370342 221730985 ahpF Stress Oxygen stress Diaphorobacter sp. TPSY superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax ebreus; 7.580603202 7.91020004 7.79965745 8.266125964 7.883608353 8.256950766 7.675586956 7.985486202 209518596 phn Organic Remediation Herbicides related compound Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.429574451 7.792000257 7.496087412 7.980583458 7.935079359 8.267692458 7.829738445 7.709778728 7.585276953 99083171 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.087713946 7.054050067 7.012816785 7.130970321 269104161 pilin virulence pilin Photobacterium damselae subsp. damselae CIP 102761 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium damselae; 8.33792262 8.414930016 8.322900129 8.09254062 7.809709957 7.94376493 8.59131254 8.310039751 8.198564322 8.091397256 8.245237583 85708272 CadA Metal Resistance Cadmium Erythrobacter sp. NAP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 8.044275121 8.106794969 7.698213042 7.824392727 7.935248482 7.84387687 8.027715547 8.059398763 8.144848918 8.240592411 8.059114671 108798666 Catechol Organic Remediation Aromatics Other aromatics Mycobacterium sp. MCS 8.572433299 8.188542482 8.396103993 7.877297226 7.720727738 8.063372018 8.6406516 8.296673047 8.454598562 7.792164116 8.33040829 255260385 pilin virulence pilin Sideroxydans lithotrophicus ES-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Sideroxydans;species:Sideroxydans lithotrophicus; 7.304804981 7.175188137 7.270003175 7.16269743 7.044973889 7.560839997 7.286233909 7.019550422 7.352756886 134266357 Al Metal Resistance Aluminum Geobacillus thermodenitrificans NG80-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermodenitrificans; 8.316888164 8.552451716 8.352680975 8.568766472 8.774638743 8.525724305 8.542193249 8.413462901 8.514836857 269786024 obgE Stress Radiation stress Sphaerobacter thermophilus DSM 20745 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 6.905555058 7.499612136 7.511912826 7.224307623 7.233146252 7.473005198 192809507 gyrB other category gyrB Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.192655732 8.425419684 7.952334267 7.909486748 7.642061479 7.653199535 7.958031194 8.130847376 7.90622009 7.572530409 7.97088181 149358525 glnA Stress Nitrogen limitation Marinobacter algicola DG893 7.722988233 7.646371884 7.981387307 7.581213724 7.425477428 7.51049647 7.648087025 7.521243222 89151912 TerZ Metal Resistance Tellurium Bacillus cereus subsp. cytotoxis NVH 391-98 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cytotoxicus; 7.906376756 7.51848191 7.094486646 7.521012024 7.319606597 8.275631516 70606789 CODH Carbon cycling Carbon fixation Sulfolobus acidocaldarius DSM 639 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus;species:Sulfolobus acidocaldarius; 7.971276289 8.184259037 7.743258037 7.792732891 7.610543472 7.685779662 7.236734437 7.892608028 7.534935582 7.954685888 7.858572972 254517369 sigma_70 Stress Sigma factors gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.111190946 8.005125405 7.51976237 7.638567451 8.01593525 8.215071612 8.139858713 8.121838404 8.226901855 8.200096063 8.366456863 119715441 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.458589332 8.366975074 8.074018642 8.303457621 8.53137401 8.372579836 8.268258227 8.308242225 8.329296915 83025978 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 7.84105003 8.011264088 7.912116121 7.812717653 8.012419856 8.191318165 7.966991142 7.996873287 7.938197891 262333742 hly virulence hemolysin Rhodothermus marinus DSM 4252 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 8.021809086 8.1272883 8.040874773 7.91899798 7.475415585 7.597488672 8.062696572 7.947708253 7.845749621 7.904154066 8.030325238 158445254 pulA Carbon cycling Carbon degradation Starch Faecalibacterium prausnitzii M21/2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Faecalibacterium;species:Faecalibacterium prausnitzii; 7.603533487 7.857922338 7.687476986 7.396166579 8.103821334 8.030671259 7.9134287 262402030 glnA Stress Nitrogen limitation Vibrio sp. RC586 8.131288699 8.541127625 7.958526613 8.385804149 8.132776077 7.717878179 7.990034949 7.821643298 8.114075426 8.258431753 7.824131074 144946534 CopA Metal Resistance Copper Petrotoga mobilis SJ95 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Petrotoga;species:Petrotoga mobilis; 7.287587755 7.232163038 82791818 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces davawensis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7.967033566 8.283846163 7.62526192 7.573165482 7.686548145 7.624442836 6.851034515 8.126693157 7.65551745 7.25694256 7.4721956 170017954 clpC Stress Protein stress Leuconostoc citreum KM20 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc citreum; 7.951915723 7.985271614 6.91171745 7.116499553 7.371184201 7.195719318 7.138855281 7.38707726 190700007 oxyR Stress Oxygen stress Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.313632407 7.166592657 260939202 amyA Carbon cycling Carbon degradation Starch Vibrio orientalis CIP 102891 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 7.403063064 7.292871757 7.272637046 7.102349528 6.978933224 7.591391028 6.913610699 6.961677356 7.228288567 226090965 pstB Stress Phosphate limitation Gemmatimonas aurantiaca T-27 8.24122083 8.314115028 7.776220153 7.718719695 8.145939224 8.210268945 7.918848347 7.84457844 7.768221248 8.02250551 76164629 pulA Carbon cycling Carbon degradation Starch Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 8.468288094 8.380658081 8.580932064 7.967124708 8.631589896 8.031378101 8.552705251 8.519596045 8.664188631 138895369 narH Stress Oxygen limitation Geobacillus thermodenitrificans NG80-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermodenitrificans; 7.294524307 7.45050825 7.769915758 7.451404735 7.263104055 7.841637804 7.911757836 7.78687766 7.615368345 163670012 sigma_70 Stress Sigma factors Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 8.01860206 7.918088675 7.966517944 7.862218283 8.238279387 8.233027784 8.307163846 8.275533472 8.324282189 85669670 gyrB other category gyrB Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.611424428 8.343690844 8.535730801 8.732039256 8.5563999 7.980268343 8.721525991 8.066731571 8.547233011 8.180068813 8.72349283 225095353 groEL Stress Heat shock Clostridium sp. M62/1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 7.960202439 7.663041773 7.767155353 7.259826353 7.894786819 8.100209323 7.648691666 7.353082848 7.479990756 192822615 amoA Nitrogen Nitrification superkingdom:Bacteria; 8.015255294 8.110566487 7.99150568 7.623880632 7.427793 7.796461748 85687689 fnr Stress Oxygen stress Erythrobacter sp. NAP1 8.439727788 8.509586048 8.445572414 8.419062578 8.109697142 8.573957361 8.515440616 8.187628171 8.269736458 7.931113626 8.117162963 268608369 srt virulence surface protein Ruminococcus flavefaciens FD-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus flavefaciens; 8.371730785 8.250469744 7.753307902 7.540265165 7.441032862 7.329575219 7.354940618 7.878047355 7.515238927 7.374659437 7.73682424 119816792 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.055251618 7.940483948 7.763201235 7.71800672 7.632068842 7.895044836 7.64864627 7.677861806 7.564328529 238062009 hly virulence hemolysin Micromonospora sp. ATCC 39149 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 8.146331355 8.340860889 7.496205875 7.82250564 7.68204109 8.086840041 7.408659283 8.325992795 7.416041466 7.340927662 7.931807203 114335392 sigma_24 Stress Sigma factors Shewanella frigidimarina NCIMB 400 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella frigidimarina; 8.02107695 8.194984662 7.17582925 7.336684144 7.538961008 7.488608982 6.658617949 7.299978679 7.762019258 86142625 ahpC Stress Oxygen stress Leeuwenhoekiella blandensis MED217 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Leeuwenhoekiella;species:Leeuwenhoekiella blandensis; 7.398212779 7.376522629 7.048264027 7.092931301 7.271691217 7.315828057 6.939785739 7.020578472 126715712 gyrB other category gyrB Roseobacter sp. CCS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.671345256 8.432288522 8.343353214 7.721522895 8.37363606 8.031568699 8.131243415 7.963601453 7.778654853 30269525 nasA Nitrogen Assimilatory N reduction uncultured bacterium superkingdom:Bacteria; 8.005977751 7.425770787 7.842794973 8.002830347 7.782623488 8.13270724 7.213533482 7.715108097 7.502900803 157837421 PobA Organic Remediation Aromatics Aromatic carboxylic acid Chromohalobacter sp. HS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter; 8.512287532 8.487439426 7.770804674 7.556306953 8.485280539 8.454536425 8.066727775 8.649457792 8.07901746 8.528777692 8.388358748 218708770 CopA Metal Resistance Copper Vibrio splendidus LGP32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 7.496441088 7.386496997 7.668959318 15597475 ArsC Metal Resistance Arsenic Pseudomonas aeruginosa PAO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 7.650995521 7.240047215 7.802925032 7.852213785 7.662461951 7.869459535 7.66940914 7.486082298 7.725736652 219994299 pstA Stress Phosphate limitation Halothermothrix orenii H 168 7.893055851 8.392064033 7.237879211 7.321723716 6.91025812 7.21594831 7.578675527 7.380225738 7.190030293 7.527811559 83572362 grpE Stress Heat shock Moorella thermoacetica ATCC 39073 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Moorella;species:Moorella thermoacetica; 7.526097079 7.386498838 7.37304369 7.39454169 7.270776875 7.446094464 7.360326895 7.376415033 71155967 atzC Organic Remediation Herbicides related compound Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.496839298 8.322408727 7.902258225 8.227877217 8.38273303 7.992962206 8.022264779 7.964363726 7.478785408 168333759 amyA Carbon cycling Carbon degradation Starch Epulopiscium sp. 'N.t. morphotype B' superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Epulopiscium; 7.917893454 8.255969378 7.149662691 7.138534268 7.05541267 6.905564499 7.235448701 66391486 UvsW Bacteria phage REPLICATION Enterobacteria phage RB43 6.75394426 7.157778497 187930638 ChrA Metal Resistance Chromium Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.267506324 8.65401939 8.022966811 7.989755342 8.683354417 8.256498549 8.237909737 8.433464864 161386542 pimF Organic Remediation Aromatics Aromatic carboxylic acid Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 8.194196819 8.417904477 7.8728435 8.063075415 8.340526766 8.475247703 8.391722383 8.521840702 8.298747194 8.197979322 8.320537337 118473311 amyA Carbon cycling Carbon degradation Starch Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.308990906 8.367485288 8.089369398 7.969232573 8.545789703 8.434549127 8.3319339 8.147203532 8.032151041 87286596 glucoamylase Carbon cycling Carbon degradation Starch Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 8.785185261 8.837771606 8.009725698 8.419225049 8.337689395 8.95313138 8.033911789 9.063293921 8.141558535 8.426514854 8.436419552 40740350 endochitinase Carbon cycling Carbon degradation Chitin Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.64339751 7.867582628 7.947280732 7.593116792 7.973682078 7.800040261 8.140596786 7.859758002 219965741 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.675343959 8.78717546 8.14580999 8.009615595 8.055428834 8.871106905 7.506871646 8.495129786 7.802424494 7.594925058 8.151297869 221067026 CadA Metal Resistance Cadmium Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.757259967 8.515668797 7.584214186 7.489442465 7.624875871 7.234088953 6.898007886 7.810542465 7.345240875 7.071615571 7.665389123 206576527 Arylest Organic Remediation Aromatics Other aromatics Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 7.709388635 7.54898678 7.968418601 7.352729813 7.773323414 7.974771288 7.642642123 7.827338396 7.52112121 86357410 nasA Nitrogen Assimilatory N reduction Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.183736357 8.142426311 7.368142935 7.742532744 7.811141635 7.492879352 7.697343103 7.465267469 154150332 CopA Metal Resistance Copper Candidatus Methanoregula boonei 6A8 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;genus:Candidatus Methanoregula;species:Candidatus Methanoregula boonei; 8.03813046 8.321084682 7.477925563 7.270172285 7.50707135 7.651174836 7.192902683 7.761012255 7.612774665 7.792962077 212542195 nagG Organic Remediation Aromatics Aromatic carboxylic acid Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.196536642 7.580953672 7.744149982 6.896442409 8.090168061 7.310650602 6.930507601 7.625272379 119898215 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 7.355228232 7.629403077 8.135028229 7.948512638 7.804732526 8.110950348 7.854983611 7.645324597 172055274 pstB Stress Phosphate limitation Cyanothece sp. ATCC 51142 8.365184251 8.44049653 7.682597497 7.823686343 7.96805625 8.042486475 7.594282929 8.145015224 7.481989085 7.668645241 8.004366279 229551751 pstB Stress Phosphate limitation Lactobacillus rhamnosus LMS2-1 7.913133281 8.27584484 7.380911767 7.15590624 7.434002044 6.984380399 6.947432912 7.532740905 7.102906395 7.060942815 7.151620658 262219948 pstA Stress Phosphate limitation Grimontia hollisae CIP 101886 7.162406439 7.175709322 7.376621301 7.45883327 7.533601729 7.236591001 7.285014062 7.223764147 23015240 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 7.946028199 7.370395705 7.889515701 7.648420048 7.867144151 7.635278741 7.947686134 110550155 nifH Nitrogen Nitrogen fixation Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 7.678451503 7.773462345 7.435623859 7.194755823 7.424529882 7.740850804 7.535228216 7.563163339 7.550034368 110599168 silP Metal Resistance Silver Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.215269245 7.69571983 7.012967823 7.49200162 7.923855552 7.737151424 7.928143211 188028928 nagG Organic Remediation Aromatics Aromatic carboxylic acid Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 7.445431326 7.29043235 146409186 dmsA Organic Remediation Others Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.400619867 8.194557114 8.001475586 8.109531013 8.085933463 8.166410187 8.172301076 8.342351002 8.162713115 114336516 gyrB other category gyrB Syntrophomonas wolfei subsp. wolfei str. Goettingen 7.4321027 7.332758102 6.743337843 7.727522686 109452489 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.641372205 8.487311933 8.148820826 8.216915573 8.065232443 7.933622044 8.158117229 8.345300957 8.11515175 7.785740707 7.935735719 30269623 nasA Nitrogen Assimilatory N reduction Halomonas sp. 'Belize Reef cbno3r1' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 8.009110104 8.127032421 7.170158253 7.319002245 7.272040017 7.537225688 6.939012401 7.29035864 50120961 narJ Stress Oxygen limitation Pectobacterium atrosepticum SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 8.27240102 8.283814892 7.524986744 7.718915463 7.893605519 7.822037856 7.860408937 8.09250809 8.131478254 8.07201149 8.087581933 121552909 pstB Stress Phosphate limitation Verminephrobacter eiseniae EF01-2 7.294165859 7.665812258 7.46934845 7.181536611 7.600872797 7.367788251 7.166858883 81251663 nirS Nitrogen Denitrification uncultured organism 7.544653319 7.444319692 7.309551744 7.056488017 7.635461074 7.510809419 7.49354876 82568648 alkJ Organic Remediation Other Hydrocarbons Rhodococcus erythropolis 7.907995769 7.838199846 7.695485235 7.902126833 7.902028022 8.049843735 7.835811589 7.650241934 7.898269128 46913795 MATE_antibiotic Antibiotic resistance transporter Photobacterium profundum SS9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 8.420458954 8.456901517 8.349513783 8.367730499 8.286413894 8.576042209 8.423242726 8.403748237 8.615228612 8.506164291 8.109054077 146388935 tfdA Organic Remediation Aromatics Chlorinated aromatics Pichia guilliermondii ATCC 6260 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Meyerozyma;species:Meyerozyma guilliermondii; 7.988740213 8.787080988 7.701853129 7.55840294 7.384452604 7.26557306 7.133882262 7.688053791 7.387124932 7.275654328 7.637531963 158337052 sigma_70 Stress Sigma factors Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;genus:Acaryochloris;species:Acaryochloris marina; 7.41286563 7.140937181 7.282733595 8346964 vanA Carbon cycling Carbon degradation Others Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.83384004 7.691474984 7.615225714 7.660734606 7.458167221 7.960430317 7.548718752 7.297215775 7.773636389 119226138 gyrB other category gyrB Rhodococcus globerulus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.517434533 8.225472584 8.530183469 8.556524645 8.316507608 8.258107561 8.673250933 8.361299793 8.466172723 8.335761497 8.230322204 15126 Host_recognition_T2_type Bacteria phage HOST RECOGNITION/STRUCTURAL Bacteriophage Ox2 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 8.060546203 8.33747013 7.619960244 7.669250364 7.706778671 7.632463787 8.086231004 7.467914772 7.310200843 91698068 bclA Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 7.041308921 7.415279998 7.44577842 7.197484462 7.163030987 7.292402929 7.209713529 220721128 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 8.125503069 8.359897835 8.057277339 8.005783451 8.719267518 8.406520096 8.314230171 8.298328284 261408735 phoB Stress Phosphate limitation Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.868101262 7.369576523 7.333941834 7.520327082 7.882479629 7.264215242 7.787702031 7.574885653 7.812820649 6531667 phoB Stress Phosphate limitation Caulobacter crescentus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 8.172459814 8.403701009 8.483362933 8.379428308 8.050349613 8.090189632 8.482704502 8.362453516 8.239786559 8.101372684 7.943054641 77458687 iro virulence Pseudomonas fluorescens Pf0-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.590070802 7.388025062 7.604371365 7.314988086 7.065483065 7.498687934 6.983980642 7.162073191 156233419 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 8.080781718 8.346666606 8.208945739 8.3510948 8.53261096 8.342195762 8.488166566 8.545834996 8.33485078 120594177 ChrA Metal Resistance Chromium Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8.17882031 8.403257351 8.076004458 8.252047838 8.012551276 7.704008531 8.002269423 8.08385857 7.729857505 8.09113556 39576231 fnr Stress Oxygen stress Bdellovibrio bacteriovorus HD100 7.563061812 7.384618598 7.362576043 6.982521736 7.283490924 7.476499152 7.397977094 7.252390688 116626884 sigma_24 Stress Sigma factors Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 8.570615889 8.771722178 8.791436004 8.824897453 8.585759224 8.831240361 8.885037501 8.536422689 8.738794757 8.542512258 8.07007798 74422083 fnr Stress Oxygen stress Nitrobacter winogradskyi Nb-255 7.376836532 7.244354519 7.44507813 7.50636468 6.956602746 7.972646105 7.040020362 7.00541708 7.309656557 51571545 gyrB other category gyrB Corallococcus coralloides superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Corallococcus; 8.026463767 7.701912618 7.356791512 7.731272775 7.709750001 7.823071867 7.612451275 7.362094419 189184969 silP Metal Resistance Silver Methylacidiphilum infernorum V4 superkingdom:Bacteria;phylum:Verrucomicrobia;order:Methylacidiphilales;family:Methylacidiphilaceae;genus:Methylacidiphilum;species:Methylacidiphilum infernorum; 8.310594969 8.192379676 7.804269851 7.57080858 7.776383343 7.524812362 7.431509527 7.476495769 7.454365178 7.516789227 258404600 phoB Stress Phosphate limitation Desulfohalobium retbaense DSM 5692 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium;species:Desulfohalobium retbaense; 8.519479221 8.586853507 7.974545829 7.952377338 7.841419077 7.710030592 8.28390734 8.03503169 8.041746888 7.858167334 7.785465199 91791079 pimF Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 7.822654325 7.479687002 7.284716647 7.530921619 7.505993501 7.50798688 7.544269408 90954601 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.997869784 8.063623983 7.960070498 7.81926141 8.178165932 8.016578822 8.229129213 7.714120005 7.637369651 207089717 gyrB other category gyrB Nitrosococcus oceani AFC27 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 6.870958796 7.331962443 6.969404975 7.297987734 99083339 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.796754006 8.115961171 7.192916698 7.209111946 7.180768263 6.597099731 6.824008243 7.459400359 6.972097526 6.882538729 7.116188227 110824846 LMO Carbon cycling Carbon degradation Others Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7.389811122 7.656162772 7.818400827 7.672313507 8.015577869 7.345235732 7.341922832 7.646171111 182633781 nmoA Organic Remediation Aromatics Nitoaromatics Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 7.75354413 7.734403198 7.662180713 7.83543056 7.74014837 8.117679505 8.070479418 8.339093587 8.251515776 192361393 phoB Stress Phosphate limitation Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 8.5231733 8.310317759 8.926915096 9.233433216 8.946510097 8.677923104 9.463132461 8.615974727 9.141233004 9.047306396 9.129556837 115522380 hrcA Stress Heat shock Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.018332323 8.10434218 7.684472799 7.470847658 7.493955165 7.303995023 7.209555206 7.749534198 172037438 TerD Metal Resistance Tellurium Cyanothece sp. ATCC 51142 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.26984292 8.204047726 8.106172146 8.003378664 7.937622494 8.20240651 8.322217464 262315643 ahpF Stress Oxygen stress Acinetobacter johnsonii SH046 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter johnsonii; 6.930047675 7.105763209 7.055389686 6.825518625 6.767100028 177842394 sigma_70 Stress Sigma factors Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 7.86103169 7.848906988 7.801928274 7.561537057 7.834530642 7.998747894 7.759549364 7.722327706 7.642862943 88775347 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 7.390991872 7.364164814 7.400976615 7.283002395 7.48663442 7.959740931 7.645779696 7.495806916 7.880818291 55163264 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 7.609499236 7.557563512 7.695770005 7.687425043 7.549592269 7.844232882 7.555659544 7.610491912 170720241 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.129567494 7.005984838 7.179778702 7.208220085 6.733545546 7.814958329 6.896018515 7.518629834 88703327 ureC Nitrogen Ammonification gamma proteobacterium KT 71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 7.074417994 7.082234475 6.7578612 7.400705531 25188163 narH Stress Oxygen limitation Selenomonas ruminantium superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Selenomonas; 7.37612458 7.544693604 7.516918219 6.77349406 7.750324991 7.514726121 7.196461566 7.595108648 73760166 akbF Organic Remediation Aromatics BTEX and related aromatics Sphingomonas sp. 14DN-61 7.691668356 7.952572129 8.207073081 8.230548706 7.905376203 8.111614535 8.108656587 8.157324375 8.056839208 28572245 clpC Stress Protein stress Tropheryma whipplei TW08/27 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;genus:Tropheryma;species:Tropheryma whipplei; 7.884938629 8.162820957 7.195674948 7.26595049 7.47064861 7.078426182 7.011502743 7.539310775 6.978245477 7.46912846 7.229906211 139478385 mer Metal Resistance Mercury uncultured soil bacterium superkingdom:Bacteria; 8.446690403 8.485022914 8.483417672 8.421994811 8.160206505 7.990238806 8.473770696 8.250441237 8.529627548 8.510913946 8.530267885 34556927 obgE Stress Radiation stress Wolinella succinogenes DSM 1740 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Wolinella;species:Wolinella succinogenes; 8.011968011 8.040491697 7.687072985 8.179987484 7.993258929 8.330883215 8.017317561 71284081 rubisco Carbon cycling Carbon fixation Prosthecochloris vibrioformis DSM 265 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeovibrioides; 7.064380858 7.109022761 7.201224855 7.322703558 145218449 CadA Metal Resistance Cadmium Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.061889405 8.211224562 8.532937384 8.856145434 8.74119832 8.562584136 9.187333594 8.365737151 8.75266804 8.672409138 9.057280226 77799786 benAB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia gladioli superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.299047979 7.911847763 8.284559517 8.613996274 8.235966996 8.329290901 7.932932038 7.806586009 7.812847704 108758234 gyrB other category gyrB Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 7.291930462 7.90875176 7.766961209 7.565413677 7.691453836 7.985865137 7.625096704 7.742974557 7.99505579 194277420 cbdA Organic Remediation Aromatics Chlorinated aromatics Rhodococcus sp. DK17 8.235871468 8.363567006 8.446115415 7.853319424 8.619174972 8.240477037 8.421779999 8.392950314 8.325082435 269218641 obgE Stress Radiation stress Actinomyces sp. oral taxon 848 str. F0332 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 848; 8.301901186 8.407040595 7.797413808 7.830954319 7.865689454 8.236884428 7.245319759 8.226071942 7.789667055 7.631364082 7.721518472 39933006 cda Carbon cycling Carbon degradation Starch Bacillus sp. I-5 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.707764491 7.92268502 7.92518704 7.525861808 7.95757949 8.001508099 7.702413051 7.660522918 7.707106594 46850268 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.072568289 7.569471503 7.455783908 7.12275518 7.942188298 7.455928464 7.440707101 7.570576068 84786701 oxyR Stress Oxygen stress Erythrobacter litoralis HTCC2594 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 8.033680633 8.284283607 7.418158225 7.521874359 7.68899483 7.100409908 7.53113042 229377917 SMR_antibiotics Antibiotic resistance transporter Oxalobacter formigenes HOxBLS superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Oxalobacter;species:Oxalobacter formigenes; 7.841595664 7.965330861 7.032888741 7.344435761 7.018350906 7.581025958 218763335 obgE Stress Radiation stress Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 7.408532921 7.833124295 7.405526144 7.252438346 7.978736402 7.197343842 7.609652663 90441265 ArsC Metal Resistance Arsenic Vibrio angustum S14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium angustum; 6.923707677 6.916732504 6.98866366 209401684 narG Nitrogen Denitrification uncultured bacterium 7.360035766 7.072975087 7.320943271 7.363802915 7.638977882 7.132716644 7.22316165 30793459 endochitinase Carbon cycling Carbon degradation Chitin Paenibacillus ehimensis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.22754904 7.253581203 6.735225858 7.026760829 7.408230488 33632161 sigma_70 Stress Sigma factors Synechococcus sp. WH 8102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 6.681877824 7.455140168 13516999 gyrB other category gyrB marine CFB-group bacterium MBIC04442 superkingdom:Bacteria;phylum:Bacteroidetes; 7.507132727 7.716400337 7.854911572 7.997939645 8.203573475 7.146070687 7.006304715 7.47637963 21239747 BMO Organic Remediation Other Hydrocarbons Pseudomonas butanovora superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 8.536748484 8.424370231 8.315000571 8.617850348 8.719213601 8.421061791 8.920069701 8.350858729 8.773498963 8.867811537 8.674369078 75227165 CadA Metal Resistance Cadmium Escherichia coli B7A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 7.893547634 8.345445716 7.954960715 7.869744699 7.742185278 7.676239731 8.216632273 8.13595527 8.054075533 7.837138074 8.06697211 83945556 pimF Organic Remediation Aromatics Aromatic carboxylic acid Oceanicaulis alexandrii HTCC2633 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis;species:Oceanicaulis alexandrii; 8.283592472 8.19864411 7.391496411 7.433477827 7.63972174 7.875296286 7.266688645 7.571644997 7.188779384 7.418371919 210634074 cellobiase Carbon cycling Carbon degradation Cellulose Collinsella stercoris DSM 13279 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella stercoris; 7.919786316 8.167314051 7.432755649 7.350011327 6.689478019 7.486028254 7.252447865 7.467837581 226939453 pstS Stress Phosphate limitation Laribacter hongkongensis HLHK9 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Laribacter;species:Laribacter hongkongensis; 7.930936317 7.87749412 8.109397974 7.710842038 8.145193488 7.505036708 7.634838676 30018796 CorC Metal Resistance Cobalt Bacillus cereus ATCC 14579 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 6.706485042 7.234670091 146409691 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.319480357 7.572417003 7.775331215 7.586381125 7.615072007 7.644873492 7.405312702 7.586150379 7.419894463 56698466 pimF Organic Remediation Aromatics Aromatic carboxylic acid Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 7.844311 7.828270601 7.701368719 7.815191615 8.094253812 8.042697837 7.791652861 7.893718954 8.085276203 158432827 pstB Stress Phosphate limitation Eubacterium dolichum DSM 3991 6.810567332 6.908632052 7.300489152 7.519412061 90265665 phenol_oxidase Carbon cycling Carbon degradation Lignin Flammulina velutipes superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Flammulina; 8.107660533 8.148100849 7.842788998 8.325167391 8.208157913 8.186582312 8.182646262 8.41183729 7.902026209 219721188 ppk Phosphorus Phosphorus utilization Stenotrophomonas sp. SKA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 7.857673371 7.563262178 7.979483221 7.673585994 7.527391994 7.563296206 7.52429752 209401972 tutFDG Organic Remediation Aromatics BTEX and related aromatics Sulfate-reducing bacterium PRTOL1 superkingdom:Bacteria; 7.810295911 7.846701226 7.647453641 7.651312212 7.995481923 8.071486515 7.421783439 7.687973755 7.24137095 157961977 pimF Organic Remediation Aromatics Aromatic carboxylic acid Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 7.938622874 7.856217947 7.500103196 8.055666078 8.1737545 7.918262992 7.959731531 8.128147709 8.239109529 255767686 amyX Carbon cycling Carbon degradation Starch Bacillus subtilis subsp. subtilis str. 168 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 8.269163179 8.166345326 7.95205016 8.008063943 7.990196238 8.242027108 7.945584173 8.195219616 7.86196155 124389563 rubisco Carbon cycling Carbon fixation Nitrococcus mobilis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus; 8.119934191 8.050078461 7.706178631 7.748906519 7.56900046 7.746069281 7.744490924 7.710960968 7.429438701 7.748419999 260174017 sigma_24 Stress Sigma factors Bacteroides sp. D2 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 8.353044635 8.427000816 7.873097841 7.865570448 7.963615881 8.449443092 7.885431067 8.52662501 7.895526659 7.871837627 8.091239028 146313596 bglP Stress Glucose limitation Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 7.273080633 7.489040733 7.813007473 7.475857666 7.946770711 7.170900971 7.455296682 211959872 narJ Stress Oxygen limitation Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 8.030968886 7.969574011 7.906332122 7.933819495 7.956870464 8.243924479 8.158333211 8.027509819 7.966778752 118748889 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Marinomonas sp. MWYL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 8.24142561 8.604463695 7.647281192 7.577669338 7.626164407 7.374245157 7.277471916 8.006899315 7.455005243 7.514388737 7.608990649 7636014 pstC Stress Phosphate limitation Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.209097942 8.097673654 7.97263531 8.051231062 8.031436317 8.065861174 8.213870303 7.630234702 27542962 B_lactamase_C Antibiotic resistance Beta-lactamases Enterobacter aerogenes superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 8.296422433 8.091475334 8.022322403 8.397754809 8.223400244 8.29036555 8.025718123 7.931473445 8.208047236 152841 phoA Stress Phosphate limitation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 7.649061198 7.653735279 7.269662718 7.811902607 7.148191085 7.686490298 7.808065893 7.346956357 239906706 sigma_70 Stress Sigma factors Desulfovibrio magneticus RS-1 7.231295725 7.052843964 6.844009416 7.645465787 7.026114218 7.080304746 197210157 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.871200299 8.150596944 8.197250287 8.446279985 8.23770126 8.190608889 8.596629623 8.30328043 157963185 cytochrome Energy process Energy process Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 7.010585336 7.005401611 7.200456587 6.820253755 7.997534204 229319761 pstC Stress Phosphate limitation Rhodococcus erythropolis SK121 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 7.827117685 7.82331766 7.793446862 7.885800628 7.905353902 8.255805571 8.124146873 7.746773599 168192808 CopA Metal Resistance Copper Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 7.984344492 7.535138254 7.967139259 7.946721723 7.90088107 8.25289443 8.353366467 8.228645947 8.153863995 118465109 arsB Metal Resistance Arsenic Mycobacterium avium 104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 8.329847266 8.400711757 7.746094819 7.807228042 7.977688096 7.366131999 7.676294362 7.272483944 7.373780549 21221847 xylC Organic Remediation Aromatics BTEX and related aromatics Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.158562603 8.296132499 7.846092356 8.152137295 8.16257988 8.461014901 7.421662551 8.451227386 7.73505025 7.225156366 7.875517951 73541393 pheA Organic Remediation Aromatics Other aromatics Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.663904277 7.945404271 7.904209629 7.914519881 7.672782913 8.006416085 7.901608977 7.885691866 8.157484327 68262818 ahpF Stress Oxygen stress Corynebacterium jeikeium K411 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 8.579555808 8.725785884 8.046604487 8.195727255 8.008915637 7.804526048 8.161323963 7.84160401 8.168303127 8.224429098 8.313321122 118762391 Catechol Organic Remediation Aromatics Other aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 7.846459848 7.581055168 7.851943124 8.066968182 7.583939473 8.353638962 7.864309378 7.950988316 7.992673051 255108557 pstC Stress Phosphate limitation Sideroxydans lithotrophicus ES-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Sideroxydans;species:Sideroxydans lithotrophicus; 8.087292935 7.475237893 7.160427457 7.624059073 7.696419659 7.74080559 7.657215462 7.376359017 239905334 cydA Stress Oxygen limitation Desulfovibrio magneticus RS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio magneticus; 8.255586082 8.249230294 7.591121927 7.922168582 7.759147308 8.035739373 7.145325951 8.326254607 7.352570638 7.410310606 7.66838966 117610746 sox Sulphur Sulphur oxidation Magnetococcus sp. MC-1 superkingdom:Bacteria;phylum:Proteobacteria;genus:Magnetococcus; 6.949309486 7.286576035 283559495 arsM Metal Resistance Arsenic Rhodomicrobium vannielii ATCC 17100 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 8.082679177 8.638422121 8.102743343 7.947825077 7.647818099 7.845126184 8.218660301 8.406787333 8.061118075 8.010775807 8.221084208 78513097 nmoA Organic Remediation Aromatics Nitoaromatics Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.511227757 8.202708346 8.598780173 8.775330885 8.429343241 8.313352156 8.79804389 8.434969268 8.674593091 8.422731103 8.474098659 119898954 ahpC Stress Oxygen stress Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8.22239992 8.093185618 7.876165707 7.765864957 7.746518351 7.923633577 7.797026981 8.104795098 7.988269004 7.983867805 7.589266946 192289585 phtA Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.338924106 8.603221772 8.028065631 8.230279231 8.678944295 8.336885079 8.43524439 8.170725948 8.440366334 8546876 SMR_antibiotics Antibiotic resistance transporter Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.132023894 8.282595263 8.01179621 8.210362693 8.016608448 7.891786733 8.361693943 8.183566271 8.227847501 8.1534244 8.047314124 1754623 Xamo Organic Remediation Other Hydrocarbons Pseudomonas aeruginosa superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.118682485 8.127586541 8.208681781 7.682347879 7.537699807 7.968744224 8.270915189 20136434 B_lactamase_C Antibiotic resistance Beta-lactamases Citrobacter murliniae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter; 7.244761674 7.293605107 7.221961655 6.689950315 7.507714857 196229502 pstA Stress Phosphate limitation Chthoniobacter flavus Ellin428 7.53737138 7.581511937 7.752611234 7.253039934 7.131708008 7.778823946 7.070834792 7.333664745 7.161735237 116061977 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.593237268 8.924904594 8.340477258 8.410775003 8.63851116 8.955320071 8.23813648 9.092117874 8.41646535 8.453798589 8.500862473 161522861 sigma_24 Stress Sigma factors Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 7.085308337 6.895763989 7.436278655 7.54127377 7.603180863 157273399 pcc Carbon cycling Carbon fixation Candidatus Chloracidobacterium thermophilum superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Chloracidobacterium; 8.471820122 8.516428622 7.913512474 8.057929269 7.879217638 7.967694322 7.755386502 8.050221607 7.624275209 8.030133634 148262414 cytochrome Energy process Energy process Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 7.372499499 7.323481296 7.570350516 7.891813734 7.587429182 7.706017967 7.729573835 7.523643107 163847463 atzA Organic Remediation Herbicides related compound Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 7.591435366 6.894465766 119944398 sigma_32 Stress Sigma factors Psychromonas ingrahamii 37 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas;species:Psychromonas ingrahamii; 7.18093166 7.151078558 7.057037565 6.725261986 7.315559427 121534441 dsrB Sulphur sulfite reductase Thermosinus carboxydivorans Nor1 7.451952635 7.477083495 7.468455017 7.585579062 7.225582526 8.085264963 7.687861956 7.811420322 7.816422068 156934114 SMR_antibiotics Antibiotic resistance transporter Enterobacter sakazakii ATCC BAA-894 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 7.883925923 7.868168273 7.954510885 7.963725233 7.841468499 8.029834188 8.112501607 8.332533368 8.06149611 221080481 ArsC Metal Resistance Arsenic Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 7.435115541 7.426704043 7.932626278 7.802475939 7.578364326 8.129661133 7.564843724 7.567751458 7.805868803 119641160 arhA Organic Remediation Aromatics Heterocyclic aromatics uncultured bacterium 7.489822402 7.363224774 7.308397639 7.244392515 7.008915589 7.410438494 7.446083841 152993297 cap virulence capsule Sulfurovum sp. NBC37-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;genus:Sulfurovum; 6.949216156 7.176846451 15140996 NiR Nitrogen Assimilatory N reduction Sinorhizobium meliloti 1021 8.068502868 8.041993209 7.87137581 7.536517612 8.139008823 8.038593019 8.075639893 7.937705711 8.239098038 47574669 ureC Nitrogen Ammonification Rubrivivax gelatinosus PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 6.904130294 7.448687319 7.476451039 7.462030745 192290053 trzE Organic Remediation Herbicides related compound Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.829184958 8.052265392 8.266893355 8.735676137 8.15222841 8.320681518 7.979189534 8.188917402 7.823907539 238025356 fnr Stress Oxygen stress Burkholderia glumae BGR1 8.565427088 8.525640708 8.198322654 8.362654943 8.812283369 7.946257045 8.7434258 8.014250923 8.068612414 8.080079682 86283619 Arylest Organic Remediation Aromatics Other aromatics Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.292353137 8.649533449 8.111069565 8.212477758 8.063502899 7.620412512 8.434891292 8.109525402 8.102844051 8.065449996 8.171482641 113473784 proO Organic Remediation Aromatics Other aromatics Sphingomonas sp. KA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.36933514 8.399553446 8.194148907 8.066200085 8.691039202 8.326986251 8.532039259 8.570875922 8.653707337 167748837 sigma_70 Stress Sigma factors Anaerostipes caccae DSM 14662 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Anaerostipes;species:Anaerostipes caccae; 7.752466742 8.022808941 6.93344088 6.905525989 7.366000404 6.749429226 7.621160436 209536356 sigma_24 Stress Sigma factors Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.073649231 7.947597092 7.917209049 7.729098451 8.241335143 7.87251706 8.121118243 8.159202624 8.121396766 170700595 bphC Organic Remediation Aromatics Polycyclic aromatics Burkholderia ambifaria IOP40-10 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 8.100881819 8.149276495 7.871320072 7.938836794 8.408599223 8.251849295 8.496511305 8.102993636 8.157548661 262083518 cap virulence capsule Gordonia bronchialis DSM 43247 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 7.955644789 8.037833125 7.788897655 8.266854685 8.51582526 8.128294671 7.988390467 8.105226293 209401606 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.28791017 8.345073449 8.454266838 8.166059721 8.318888588 8.898715954 8.39897381 8.601139349 8.346606526 8.539714002 148554462 vanA Carbon cycling Carbon degradation Others Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.111868914 8.561910212 8.504866203 8.497583483 8.890767942 8.77788204 8.647008901 8.357903294 219548826 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.853212711 8.038429177 7.158284701 7.240441929 7.102484769 6.934707857 223043841 endochitinase Carbon cycling Carbon degradation Chitin Staphylococcus capitis SK14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus capitis; 7.599657916 7.366628938 7.42680977 7.16161209 7.425386089 7.819020468 7.481009002 7.235680075 7.544838059 78057476 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira; 8.388730557 8.178985815 7.411952028 7.811820016 7.945506703 7.967525343 8.177617689 8.012167151 8.02666423 8.106720941 7.932552119 224369939 pstC Stress Phosphate limitation Desulfobacterium autotrophicum HRM2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium;species:Desulfobacterium autotrophicum; 7.149986658 7.270969918 7.491698781 7.507436104 6.576955756 7.559714585 6.903152999 7.587400003 21320168 pcaG Organic Remediation Aromatics Other aromatics Acinetobacter lwoffii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 8.313878889 8.380248508 8.256353225 8.255149728 8.549057041 8.096931795 8.52390647 8.504024525 8.453517591 151575374 CopA Metal Resistance Copper Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.270046376 7.870489502 7.725562361 7.794099178 7.915677963 8.152082726 7.800284333 7.814830917 7.785722189 120325564 pcc Carbon cycling Carbon fixation Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 8.156548937 8.141694049 8.231171366 8.243553812 7.991544646 7.660249624 8.029443651 8.139954523 7.914543522 7.874054205 7.575141353 159890512 pcc Carbon cycling Carbon fixation Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 8.478700502 8.545214853 8.871913817 8.676890009 8.699420412 8.850576089 8.695786793 9.745184012 8.767813478 261401452 ppx Phosphorus Phosphorus utilization Neisseria lactamica ATCC 23970 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria lactamica; 7.668866995 7.455379521 153871382 aoxB Metal Resistance Arsenic Beggiatoa sp. PS superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Beggiatoa; 8.220192752 8.359973639 7.317970343 7.376102437 7.546422389 7.143297416 7.242868324 7.631957181 254395990 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 8.246730538 8.338032777 8.081823033 8.144807139 8.129442926 8.269890323 8.672092052 8.38153404 8.805255961 8.44777728 8.557854196 598361 bphD Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 8.361854049 8.367733564 8.236292834 8.549570414 8.605665038 8.625368084 8.738512149 8.565290513 8.276185846 82734593 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. FMC-TCE superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.527240871 8.006267352 7.645777407 7.686824395 7.662461951 7.45087477 7.885051429 8.121877276 207088307 pstC Stress Phosphate limitation Nitrosococcus oceani AFC27 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 7.781747983 7.87550817 6.778773226 6.585104677 7.275121421 6.659905062 7.289573957 94309416 TerC Metal Resistance Tellurium Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.586013524 8.357586946 8.028180973 8.238575477 8.54689462 8.174857981 8.472766016 8.766328666 7.873046581 218530868 CopA Metal Resistance Copper Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 8.973056201 8.815414176 9.148555888 9.068105181 8.838296847 9.486472674 9.249877266 9.049794414 9.372072377 9.245260744 8.875306684 220704867 dsrA Sulphur sulfite reductase Blautia hansenii DSM 20583 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Blautia;species:Blautia hansenii; 8.164925321 8.130317295 7.594539111 7.422824326 7.5354571 6.951758153 7.668486287 7.142251886 7.316002137 7.207387001 208007630 hly virulence hemolysin Aliivibrio salmonicida LFI1238 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Aliivibrio salmonicida; 7.302597688 7.498961506 7.132039974 6.678629511 7.274466685 7.063362477 6.926775547 7.231725957 4996788 gyrB other category gyrB bacterium rJ16 superkingdom:Bacteria; 7.472420245 7.983912578 7.848060566 8.168583321 7.998676828 7.791268836 8.152232683 7.792587535 73763082 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.078258415 7.899628937 7.84887957 7.832318619 8.209682124 8.03762723 8.19101178 7.631655441 8.113198068 219680360 BADH Organic Remediation Aromatics Other aromatics gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.775945666 7.794802401 7.759469488 7.579854291 8.119066942 8.002201082 8.044761161 7.871544824 7.932860226 73762966 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.44646444 7.465887939 7.622406474 7.344203646 7.238144375 7.869983058 7.147102829 7.082138238 7.454624285 126738943 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.622991216 8.757376739 8.015633164 8.135421535 7.753575214 7.712783877 7.386752523 8.151803892 7.772515758 8.029335402 73534241 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.73668296 7.378437251 7.538267596 7.498121911 7.25646558 7.529656035 7.290736317 7.457822433 151302117 APS_AprA Sulphur adenylylsulfate reductase Archaeoglobus veneficus 7.45472437 7.73344451 7.584315199 7.404240742 7.70849496 7.945315157 7.892480465 7.715641459 7.753890991 119818411 silC Metal Resistance Silver Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 8.042621262 8.19608316 8.074950599 7.871424594 8.385621296 8.064779088 8.239972083 8.21363821 8.258097479 121711156 oxdB Organic Remediation Aromatics Nitoaromatics Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 8.178479053 8.119239521 7.462298644 7.72087147 8.219855655 8.075805533 7.991870282 8.349345682 7.689515285 7.628970642 7.789974864 84688562 single_strand_annealing_protein Bacteria phage REPLICATION Geobacillus phage GBSV1 order:Caudovirales; 7.290443583 7.094378022 7.17561674 7.333254559 159900513 pstB Stress Phosphate limitation Herpetosiphon aurantiacus ATCC 23779 7.865354665 7.53185488 7.362166891 7.700915081 7.289505107 7.821051358 7.289004515 7.21986083 7.253667135 242391954 glnA Stress Nitrogen limitation Streptococcus dysgalactiae subsp. equisimilis GGS_124 8.529366687 8.867801133 8.486250259 8.501006567 8.568670098 8.336587211 8.234334635 8.239421954 8.306334484 8.413830644 8.40587818 212557631 pimF Organic Remediation Aromatics Aromatic carboxylic acid Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 7.778889431 7.332402773 7.313952487 7.079780515 7.677831559 7.164313185 7.189694632 262335232 sigma_24 Stress Sigma factors Rhodothermus marinus DSM 4252 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 8.11585476 8.399014159 7.664806015 7.851194373 7.60655368 7.207671601 7.660453335 7.866833433 7.634011649 7.538333346 7.911384345 148259618 formate_hydrogenlyase_complex Bioleaching Carbon fixation Acidiphilium cryptum JF-5 8.322417232 8.104114266 8.189797495 7.576547074 8.227062662 7.898433969 8.002881869 8.354610788 7.796923006 145588667 ChrA Metal Resistance Chromium Polynucleobacter sp. QLW-P1DMWA-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 8.160079099 7.729336372 7.901307886 7.69808927 7.468195082 8.05748629 7.584740981 7.550682097 7.822902084 126722223 bphB Organic Remediation Aromatics Polycyclic aromatics Rhodococcus rhodochrous 7.921601987 8.007201924 7.133000237 7.362395125 6.981314272 6.787249335 7.3294526 7.444228826 7.034663531 146341985 MFS_antibiotic Antibiotic resistance transporter Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.805637801 7.773867422 7.864917867 7.961133374 8.228377424 8.110724955 8.04769772 7.690811105 56696735 ppx Phosphorus Phosphorus utilization Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 7.718058385 7.765478461 7.793149165 7.431331893 7.971402142 8.049065663 7.842606217 7.754162183 7.896170562 119355978 dsrA Sulphur sulfite reductase Chlorobium phaeobacteroides DSM 266 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 7.861155883 7.721785403 7.897908009 7.702614599 7.924043988 8.266710138 8.025620725 7.634623548 7.950439536 225791775 ara Carbon cycling Carbon degradation Hemicellulose Acidobacterium capsulatum ATCC 51196 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteria;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 7.946923832 7.724331939 8.140548368 8.343172209 8.066860686 7.931917231 7.740049136 8.01002964 7.817797093 111151404 TerD Metal Resistance Tellurium Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 8.400029371 8.634981669 8.040771362 7.835187357 8.053793489 8.155879626 7.98750039 8.353981294 7.892064248 7.922813953 8.117537444 23012946 ppx Phosphorus Phosphorus utilization Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 8.323618535 8.213082404 7.810978763 7.9040887 8.05982565 8.106082763 8.355969344 7.657253264 8.190985554 7.935019498 113972004 dmsA Organic Remediation Others Shewanella sp. MR-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 7.027714503 6.901928994 115517221 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.620735555 7.530757469 7.555720259 6.960355417 7.767224127 7.788109971 7.87412594 7.6013016 7.706597062 42522452 sigma_24 Stress Sigma factors Bdellovibrio bacteriovorus HD100 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 7.945904559 7.675548128 7.441382056 7.562231931 7.422824923 7.940150785 7.41187602 7.333337651 7.550475957 83945050 hrcA Stress Heat shock Oceanicaulis alexandrii HTCC2633 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis;species:Oceanicaulis alexandrii; 7.686751021 7.564301469 7.50133891 7.498617198 7.239572552 7.67715899 7.368510045 7.270267971 7.401581816 219676886 pnbA Organic Remediation Aromatics Nitoaromatics gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.438676255 7.378175689 7.616294443 7.276093927 7.112673649 8.015757753 7.539291406 7.217075941 7.176230512 224372360 pstC Stress Phosphate limitation Nautilia profundicola AmH superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Nautiliales;family:Nautiliaceae;genus:Nautilia;species:Nautilia profundicola; 7.387422966 7.215591873 6.912100363 7.682392329 147677873 CODH Carbon cycling Carbon fixation Pelotomaculum thermopropionicum SI superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Pelotomaculum;species:Pelotomaculum thermopropionicum; 8.612026821 8.766817526 8.006415596 8.228007154 8.14890376 8.055504641 7.909125308 8.339559096 8.227995386 8.32296226 393403 amyA Carbon cycling Carbon degradation Starch Bacillus sphaericus 7.42826741 7.356512482 7.207175092 7.214682206 7.301567586 7.195486978 7.544382568 7.345413188 167747776 bglP Stress Glucose limitation Anaerostipes caccae DSM 14662 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Anaerostipes;species:Anaerostipes caccae; 8.230770695 7.83386126 8.059458924 7.507847525 8.123313132 7.601864683 7.815852844 7.951054954 8.24843848 152986007 silC Metal Resistance Silver Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 7.569210226 7.53180946 7.631395722 7.416286512 7.39485566 7.75816803 7.37425279 220713868 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.099542171 7.74245128 7.497358636 7.662092539 7.718510478 8.003333117 7.771374014 7.60814047 7.571104454 92113457 narH Stress Oxygen limitation Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 7.264678468 7.351571055 7.30406229 7.447227466 7.637497163 7.523093382 7.592908973 260597091 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Cronobacter turicensis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter; 7.790469565 7.970033221 8.135435565 8.280444788 7.238045784 8.638230492 7.679201591 7.610297684 7.778929948 157377000 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 7.935361454 7.704549893 7.565170351 7.226750886 7.82071608 7.504772139 7.516354615 7.858528578 7.958578944 29824659 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.238400706 7.963749019 7.807861423 7.363905235 7.643618664 7.293114603 7.787601774 196156539 sigma_70 Stress Sigma factors Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 8.045786747 8.242151886 8.338179209 8.800883576 8.355201399 8.045645263 8.19851844 8.274300092 7.849003239 85817227 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Cellulophaga sp. MED134 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Dokdonia;species:Dokdonia donghaensis; 7.392121317 7.160659433 7.350598776 7.152780623 7.036568683 7.393801399 7.252862827 7.431111358 77163592 sigma_70 Stress Sigma factors Nitrosococcus oceani ATCC 19707 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 7.375321419 7.361298486 6.825385706 6.880750854 7.196730204 7.515459587 7.534898351 7.890253604 111026380 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7.245811254 7.359353121 7.999817923 8.234196286 7.731848764 8.036116328 7.448463189 7.292099935 7.361842346 24460036 cpnA Organic Remediation Other Hydrocarbons Comamonas sp. NCIMB 9872 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 8.758558584 8.782358863 8.40795805 8.334654454 8.16775588 8.043580463 8.0782168 8.453184132 8.191807216 8.131039648 8.361948781 209528552 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.306456042 7.235846949 7.4566199 7.426817216 7.57111347 7.809972597 7.553852145 7.16811177 7.353515638 218521344 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 7.582249133 7.746948405 7.366962304 7.403443407 7.403512514 7.37812881 7.108116151 221195336 grpE Stress Heat shock Atopobium rimae ATCC 49626 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Atopobium;species:Atopobium rimae; 7.471839698 7.59517487 7.364467447 7.288676427 7.281505264 7.797663913 7.298496301 7.596634794 256726687 katE Stress Oxygen stress Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 7.904804166 8.249111676 7.588267248 7.915815559 7.444067795 7.511883208 7.530281084 8.029526593 7.735805325 7.356235485 7.640418882 51242707 phenol_oxidase Carbon cycling Carbon degradation Lignin Lentinula edodes superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Lentinula; 7.913992 7.609105441 7.625792373 7.376508197 7.379515127 7.841953394 7.278303463 7.719742051 124267090 glnA Stress Nitrogen limitation Methylibium petroleiphilum PM1 8.350702768 8.296474394 7.886402849 7.87234058 8.327914469 8.383006862 8.106522855 7.896500448 7.857407847 145221132 Catechol Organic Remediation Aromatics Other aromatics Mycobacterium gilvum PYR-GCK 7.605372553 7.289913248 7.237986289 7.589980214 7.283995034 7.56209785 7.624476274 7.630308924 27382608 dehH Organic Remediation Chlorinated solvents Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.710305506 7.806626431 7.787805091 7.501349348 7.984681847 7.739613618 7.322490454 7.792153972 59712579 AceA Carbon cycling Carbon degradation others Vibrio fischeri ES114 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Vibrio fischeri; 8.321163826 8.323497308 7.774908384 7.627379572 7.50979996 7.368610531 7.265786664 7.734854308 7.815088602 7.368803709 7.556342289 126720567 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.814276615 7.715471865 7.798164006 7.573980606 7.329154227 8.087019387 7.702014666 7.772197063 7.761409693 90337405 pcc Carbon cycling Carbon fixation Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 7.567057339 8.038074064 8.090624136 7.718607318 7.77570682 7.536811012 7.684781579 7.675392337 242816268 MFS_antibiotic Antibiotic resistance transporter Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 7.296839342 7.415467133 7.970288959 7.582307181 7.799109189 7.59829498 7.550120362 7.865126322 85705428 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.141807851 8.327906399 8.378424662 8.349443194 8.303145325 8.244915242 8.348486877 8.30712143 8.600348063 8.527304303 7.896395187 91215214 grpE Stress Heat shock Psychroflexus torquis ATCC 700755 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Psychroflexus;species:Psychroflexus torquis; 8.292699937 8.567908767 7.574615585 7.472444309 7.750581022 6.759462657 7.64913783 7.29130483 7.3183295 7.587754234 188533124 grpE Stress Heat shock Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 7.837830839 8.280506972 7.308261858 7.568389433 7.744083463 7.314987229 7.575392 7.510084776 7.366088575 12642576 cbb Bioleaching Carbon fixation Acidithiobacillus ferrooxidans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus; 8.163156973 7.786073663 7.734524751 8.02950544 8.351511799 8.313038274 8.1245012 7.83961688 8.102435429 83749921 mer Metal Resistance Mercury Ralstonia solanacearum UW551 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 8.601711134 8.951276743 7.947865907 8.238739084 8.146724885 8.313544797 8.025559809 8.162727894 8.011200357 8.085127271 50875043 MFS_antibiotic Antibiotic resistance transporter Desulfotalea psychrophila LSv54 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfotalea;species:Desulfotalea psychrophila; 7.969758943 8.333958825 7.853598825 7.907435207 7.85290338 7.552777134 7.659415198 7.813110232 7.582680368 7.424659352 7.530073258 56312803 Apc Organic Remediation Aromatics BTEX and related aromatics Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 8.107784998 8.368369016 8.282431614 8.435847438 8.221389615 8.520000525 8.508853894 8.398057361 89347083 dehH109 Organic Remediation Chlorinated solvents Rhodoferax ferrireducens DSM 15236 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 8.311840259 8.370947594 8.151808147 8.353820374 8.23184516 8.232224069 8.439593201 8.277948847 8.469272348 8.426799886 8.223211858 242373282 endochitinase Carbon cycling Carbon degradation Chitin Staphylococcus epidermidis M23864:W1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus epidermidis; 7.24600765 7.289496772 7.190479658 7.21470083 7.164830937 197930459 mannanase Carbon cycling Carbon degradation Hemicellulose Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 8.019800024 8.629776526 7.689281944 7.64821306 7.094932924 7.36179651 251771945 pstC Stress Phosphate limitation Leptospirillum ferrodiazotrophum superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 8.291407474 7.992844128 8.037423791 7.477414543 8.359213861 7.810474656 8.219271556 8.350025399 229328115 obgE Stress Radiation stress Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 7.617495226 7.392298545 7.428717806 7.490894465 7.967906613 7.541215583 7.363781255 7.695753077 38199014 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium; 7.952949743 8.138843885 7.664637982 8.022906351 7.742439864 7.44082268 7.264632613 7.876608487 7.645905017 7.524287784 7.350747013 148260910 pstA Stress Phosphate limitation Acidiphilium cryptum JF-5 7.804601599 7.345145504 7.158109973 7.370387799 7.479746085 7.330090116 7.167093833 120604842 silC Metal Resistance Silver Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 8.007918956 8.474032756 7.656923306 7.829690001 7.596456132 7.69113684 7.719474777 77956457 nrfA Nitrogen Dissimilatory N reduction Yersinia bercovieri ATCC 43970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 8.43949415 8.143182033 8.149916975 8.301575697 8.126570937 8.550451311 8.669168866 8.6530296 8.517592894 8.163208585 7.897569946 217978065 gyrB other category gyrB Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 9.698715642 9.654489466 9.357392207 8.902370827 8.679112172 90335136 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 7.994300636 8.199494544 8.283264864 8.169046543 7.661688662 8.039351642 8.069973371 8.163493743 7.963067284 7.870538456 7.813744265 89145100 ppk Phosphorus Phosphorus utilization Microbacterium phyllosphaerae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium; 7.531632334 7.495479596 7.635266282 7.599652052 7.351511784 8.079457103 7.290468237 7.493393905 71383830 nasA Nitrogen Assimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.967907135 7.512771099 7.666495077 8.027780317 7.375257653 7.959189172 7.742968275 7.689023667 7.556344298 194289756 pimF Organic Remediation Aromatics Aromatic carboxylic acid Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 7.977846798 7.822460744 7.71696127 7.529355244 7.58549333 7.730771989 7.802789709 7.597596662 7.25555361 50877392 sigma_32 Stress Sigma factors Desulfotalea psychrophila LSv54 6.964007264 7.475633291 7.483584663 7.452811635 7.802991712 261371595 mannanase Carbon cycling Carbon degradation Hemicellulose Fibrobacter succinogenes subsp. succinogenes S85 superkingdom:Bacteria;phylum:Fibrobacteres;class:Fibrobacteres;order:Fibrobacterales;family:Fibrobacteraceae;genus:Fibrobacter;species:Fibrobacter succinogenes; 7.314032803 7.323434118 7.78028719 7.676181103 7.32377728 8.113899573 7.373764719 7.078336553 7.454564622 121301849 cbdA Organic Remediation Aromatics Chlorinated aromatics Ralstonia pickettii 12J 7.444193517 7.516247459 7.425970918 7.461255694 7.086268707 7.765732611 7.496410488 7.528782338 7.456391299 17135146 amyA Carbon cycling Carbon degradation Starch Nostoc sp. PCC 7120 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc; 7.559752459 7.290071572 7.279555763 7.010551016 7.66648168 12006232 cda Carbon cycling Carbon degradation Starch Geobacillus stearothermophilus 7.988413508 8.315256473 7.625925857 7.478607748 7.576795713 7.531999985 7.451851845 7.769248979 7.518090479 7.238665477 7.657615263 108757374 nrfA Nitrogen Dissimilatory N reduction Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 8.214376717 8.296099486 8.294330323 7.955451255 8.245343486 8.228508806 8.243759825 8.302121638 8.319570211 145225492 nhh Organic Remediation Aromatics Nitoaromatics Mycobacterium gilvum PYR-GCK 8.137244013 8.397685637 8.202979184 8.150766412 8.065412575 8.142664496 8.286586221 8.156949995 8.284419198 8.220811138 8.131544293 158509941 ahpF Stress Oxygen stress Desulfococcus oleovorans Hxd3 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus;species:Desulfococcus oleovorans; 8.011801732 8.237023592 7.785094759 7.806227886 7.583590791 7.326460914 7.493565759 7.789957211 7.625881348 7.33041086 7.659692433 218548313 pap virulence adhesin Escherichia fergusonii ATCC 35469 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia fergusonii; 7.353308344 6.926820548 7.307078573 7.633938924 86358386 nhh Organic Remediation Aromatics Nitoaromatics Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.532624296 7.447108812 8.222459135 8.261110339 7.886086428 8.360185624 7.858474144 7.830186664 8.031738512 70605910 peroxiredoxin Bioleaching Metal Resistance Sulfolobus acidocaldarius DSM 639 7.527520142 7.395549124 7.428441872 241206442 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.151906026 8.263960641 7.598596505 7.708125029 7.88728607 8.009184228 7.676799393 8.026818811 7.874927971 8.099279425 8.207799004 108759197 pcc Carbon cycling Carbon fixation Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 7.973005148 8.179684692 8.078113267 8.54141499 8.255081778 8.234689544 8.230031451 8.367931909 8.325868872 27657346 tfdB Organic Remediation Aromatics Chlorinated aromatics Defluvibacter lusatiensis superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Defluvibacter; 7.394301069 7.284031177 7.219120444 7.533937147 7.275169009 7.429358584 258520555 pilin virulence pilin Cardiobacterium hominis ATCC 15826 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Cardiobacteriales;family:Cardiobacteriaceae;genus:Cardiobacterium;species:Cardiobacterium hominis; 8.329407189 8.486239364 8.341800071 8.283367641 8.651130477 8.435436006 8.746853592 8.499065223 8.54647669 177842779 nitA Organic Remediation Aromatics Other aromatics Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 8.073971022 8.524322846 7.866084401 7.525322361 7.444233428 7.934334009 7.839090234 8.178345676 7.659739 7.738150978 7.43187344 171687227 ChrA Metal Resistance Chromium Podospora anserina superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 7.110243865 6.898900351 144899811 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 8.950528299 8.754622039 8.449588573 8.30446113 8.432266891 8.432518612 8.348685508 8.71239042 8.064734158 8.509742097 8.236593087 94497371 pulA Carbon cycling Carbon degradation Starch Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 7.963033162 7.931615306 7.553655314 7.82085718 7.758430583 7.862830845 7.856981176 7.824517581 7.084816711 27375786 hrcA Stress Heat shock Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.426556941 7.677316549 8.125348751 7.316920079 8.184947154 221722229 pstA Stress Phosphate limitation Agrobacterium radiobacter K84 7.826538591 7.779671618 7.921558318 8.327299196 6.878906192 7.675192935 62391137 alkK Organic Remediation Others Corynebacterium glutamicum ATCC 13032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 7.938206744 8.241609076 7.175459083 7.252347524 6.868685796 7.247495795 150836774 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Marinomonas sp. MWYL1 7.98199545 8.016078036 7.415668432 7.614067112 7.749328755 7.476173935 8.146807611 7.140328914 7.806049026 62636393 terminase_large_subunit Bacteria phage REPLICATION Bacteriophage ROSA 8.077679419 8.14858729 145534482 CadA Metal Resistance Cadmium Paramecium tetraurelia superkingdom:Eukaryota;class:Oligohymenophorea;order:Peniculida;family:Parameciidae;genus:Paramecium; 7.955749267 8.033998778 7.516452693 7.862076371 7.397955156 7.416043664 8.114054327 7.67039657 8.084222353 7.972591693 7.975739163 74422795 benAB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.946003099 7.675787315 7.861416486 7.426634483 7.732566916 8.09605739 7.62314683 7.159247852 7.557686741 119861415 sigma_38 Stress Sigma factors Borrelia hermsii DAH 8.364357995 8.812348372 7.694370333 7.800309078 7.46458181 7.756113484 164688020 fnr Stress Oxygen stress Clostridium bartlettii DSM 16795 7.784169761 8.047719869 7.192857334 7.444131585 7.156201509 6.821396459 7.532148663 6.870231404 7.291464132 15807939 AceB Carbon cycling Carbon degradation others Deinococcus radiodurans R1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 8.406480743 8.884503259 8.524923211 8.162771287 8.293934472 8.561057186 8.343223942 8.67464559 8.199461812 8.378361256 8.119807627 78695435 oxdB Organic Remediation Aromatics Nitoaromatics Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.592576862 8.185098435 8.082199165 8.282625742 7.564295207 7.48001454 7.712474331 8.194424053 109698694 arcA Stress Oxygen limitation Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 7.928905089 8.34555348 7.354150547 7.419159202 7.167488465 7.290902211 7.475209712 108764683 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 8.550808492 8.543765941 7.833600952 8.039424431 8.511077386 8.624984263 7.921307013 8.648302349 8.189719927 8.672048959 8.174590279 194337422 BchY other category chlorophyllide reductase Pelodictyon phaeoclathratiforme BU-1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 8.280575236 8.461726527 7.98168558 8.434153404 7.989255248 8.267287771 8.376976129 36786389 katE Stress Oxygen stress Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 7.123900959 7.021827383 6.444559566 7.671635015 7.093758456 6.907847824 169004518 ArsC Metal Resistance Arsenic Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.871160079 7.775401352 7.860289496 8.005720188 7.766359519 7.946276056 7.947933882 7.95291601 16762811 NiR Nitrogen Assimilatory N reduction Salmonella enterica subsp. enterica serovar Typhi str. CT18 8.201690786 8.517212601 8.141241393 7.97979471 7.815004011 8.042149618 8.384548294 8.251696644 8.026950451 8.361980532 146276794 ChrA Metal Resistance Chromium Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 7.319986747 7.838677026 7.970600926 7.887849699 7.592482363 8.188350498 7.644668425 7.542865583 7.991672745 71898525 glnA Stress Nitrogen limitation Xylella fastidiosa Ann-1 7.280028518 7.419272975 7.410011089 7.504322769 7.231816087 7.719224916 7.605934729 7.665072448 7.577169538 163816692 ChrA Metal Resistance Chromium Coprococcus eutactus ATCC 27759 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Coprococcus;species:Coprococcus eutactus; 8.677959328 9.009071873 7.931709521 8.05405981 7.990542293 7.887052963 8.274064402 8.593966573 8.395113574 7.967642223 8.217464059 92113865 ChrA Metal Resistance Chromium Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 7.75646942 8.200952073 7.772687331 8.004933692 7.802786164 7.896577666 7.76000601 7.914946667 2073550 cbaA Organic Remediation Aromatics Chlorinated aromatics Conidiobolus coronatus 7.849623182 7.974882833 8.665602421 8.759162949 8.118211302 7.944348254 7.745957672 8.02051362 257064006 obgE Stress Radiation stress Slackia heliotrinireducens DSM 20476 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Slackia;species:Slackia heliotrinireducens; 7.150319101 7.210757415 7.306733406 6.994616292 6.913152146 7.558827497 7.177209017 6.998338309 7.321216551 222106936 fnr Stress Oxygen stress Agrobacterium vitis S4 8.117478468 8.197270561 7.328079162 7.312913189 7.459455014 7.208454121 7.128898626 7.57193708 7.314013433 7.364225429 7.451461464 260061648 amyA Carbon cycling Carbon degradation Starch Robiginitalea biformata HTCC2501 8.760554919 8.829765181 8.594065911 8.509496032 8.342513872 8.436969317 8.361782347 8.439774012 228904494 srt virulence surface protein Bacillus thuringiensis IBL 4222 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus thuringiensis; 8.026554784 8.043727869 7.414568229 7.2893557 226309963 proV Stress Osmotic stress Brevibacillus brevis NBRC 100599 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus brevis; 8.694892522 8.507434564 8.2469858 8.601877748 8.500989119 8.181799149 8.430203801 8.129204466 8.078686284 15028603 cytochrome_b Bioleaching Electron transport Acidithiobacillus ferrooxidans 7.389375079 7.602330628 7.491542164 7.183022944 7.537441924 7.680329509 7.36890829 7.164064273 7.225866968 162281532 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 7.751429468 7.873897101 7.631920777 7.825773471 8.126242106 8.084435417 8.007328445 8.042295533 119768636 fnr Stress Oxygen stress Shewanella amazonensis SB2B 7.395472595 8.083248619 8.460333173 8.560306686 8.293718913 8.437232225 8.192796506 8.301663496 8.60627708 227881112 pstB Stress Phosphate limitation Halogeometricum borinquense DSM 11551 7.560235559 7.703777219 8.072119908 8.050574631 8.312279813 8.279704845 8.163705625 8.332926752 111027137 Catechol Organic Remediation Aromatics Other aromatics Rhodococcus jostii RHA1 7.866857028 8.154713423 8.423080249 7.950020155 8.243639417 8.258287994 8.225531166 8.158779171 7.880923974 209874119 ALN Organic Remediation Others Oligotropha carboxidovorans OM5 8.337049244 8.343681026 7.72576281 7.928229385 8.258647862 8.111218425 7.84686763 7.741514961 7.984656485 8.035875728 159040253 fnr Stress Oxygen stress Salinispora arenicola CNS-205 7.861478581 8.056330042 8.211185125 7.95383137 8.082525034 8.327261662 8.063928363 8.193326351 8.034388107 134099985 alkK Organic Remediation Others Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 7.862553173 8.059952893 7.733982371 8.127411335 8.527476374 8.103714535 8.209445073 8.459640274 7.909686435 8.440581367 7.789470036 120594717 AceA Carbon cycling Carbon degradation others Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 7.768892539 7.499441415 7.847171968 7.602436243 8.279141767 7.756836268 7.605159065 7.35656373 305060 pilin virulence pilin Eikenella corrodens superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Eikenella; 8.562357695 8.972968022 8.01991023 7.91815738 7.700575386 7.59420754 7.488157295 7.499724883 7.720838605 7.990996325 157410051 TerC Metal Resistance Tellurium Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 8.403744753 8.309272243 8.323029484 8.219388011 7.987310947 8.269576871 8.214845759 8.346294802 8.115931567 8.111987353 8.00986723 37813031 mmoX Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7.885561437 8.160737633 6.681538138 6.488787802 7.329454716 6.95163486 7.010259223 7.172061166 87281133 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.00620852 8.248615381 8.182886507 7.963282746 7.834384031 8.075799922 7.83311489 8.116375727 7.964699968 7.71865024 7.932526504 118672321 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 7.525019564 7.635084194 7.349359741 7.427247015 7.21396041 7.68486704 7.254885744 7.394700593 7.283252441 51850068 bco Organic Remediation Aromatics Aromatic carboxylic acid Magnetospirillum sp. TS-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum; 8.385133919 8.771512233 8.390704407 7.78169875 8.417301206 8.166298126 8.251893124 8.729558764 15966006 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 8.219419538 8.054307327 8.019714805 8.130464572 7.872727543 8.147973346 8.175017389 8.257648041 8.008873761 7.987532922 8.034143107 119477773 ureC Nitrogen Ammonification Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 7.356653171 7.339330269 7.698522078 7.347821771 7.097590021 7.728443323 7.214866402 7.332908633 219868833 CadA Metal Resistance Cadmium Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 7.747540912 7.865597335 7.885565614 7.394269677 7.747043868 7.8140039 7.947687911 7.867483432 7.839551158 87136111 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 8.050316278 8.263435495 7.981703738 8.532870746 8.386331479 8.287179177 8.528405353 8.379294022 7.892148568 148550643 fnr Stress Oxygen stress Sphingomonas wittichii RW1 7.180316883 7.363590042 7.58193124 7.272867772 7.340167775 7.65664136 7.630674916 7.426687738 7.412690308 270505089 sigma_24 Stress Sigma factors Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 8.11575382 8.262077949 7.657298472 8.148446915 8.465801114 8.542118149 8.083167786 8.603719739 8.363190479 8.090606634 212555478 Arylest Organic Remediation Aromatics Other aromatics Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 8.170149036 8.188691435 8.609608788 8.476728738 8.258951358 8.385529785 8.136936372 8.322559049 8.164821376 8.069890597 8.205724379 146396446 hydrogenase Energy process Energy process Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 7.806218846 7.698678696 7.431254623 8.12840416 7.871888258 8.173070076 7.912826831 7.836979923 7.732546816 219677403 atzA Organic Remediation Herbicides related compound gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.552261358 7.879471806 8.004999639 8.027727272 7.818988715 8.138865006 7.841227536 8.285862288 8.058457527 209537439 phn Organic Remediation Herbicides related compound Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.164117097 6.702411612 7.786172681 7.000231191 7.290295221 81251659 nirS Nitrogen Denitrification uncultured organism 7.973280364 8.214255773 8.092203264 8.093879361 7.937067639 7.795962216 8.428465229 7.8412723 8.127943049 8.022000602 8.15351681 257458839 napA Nitrogen Dissimilatory N reduction Campylobacter gracilis RM3268 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter gracilis; 8.197653227 8.354047944 8.002744942 8.223824803 8.10280424 8.290541312 8.157298899 8.261324753 8.166633127 8.24159253 8.171466309 209491813 sigma_70 Stress Sigma factors Arthrospira maxima CS-328 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira maxima; 8.131495419 7.371388035 56695895 sox Sulphur Sulphur oxidation Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 7.822844911 8.145880724 8.336341621 8.539929512 7.100960934 8.458554691 7.687627131 7.607101583 7.750760918 169175087 adpB Organic Remediation Pesticides related compound Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 7.520604805 7.630019577 7.757845303 7.656186194 7.457853101 7.419989729 7.48322961 7.575445528 146191656 atzC Organic Remediation Herbicides related compound Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.42329646 8.387337701 8.021169751 7.982801894 8.488191199 8.122281919 8.338927081 8.319689155 8.282791792 92112305 exaA Organic Remediation Chlorinated solvents Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 10.1111368 9.740058006 9.509217426 219866383 fnr Stress Oxygen stress Cyanothece sp. PCC 7425 7.669130901 7.467775113 7.654155759 7.174234075 7.547734865 7.903684127 7.235100572 7.064459168 7.464960932 149203252 CopA Metal Resistance Copper Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.180311208 7.100031015 7.331270518 7.172308954 6.879681039 7.832608026 7.099263117 6.864116871 7.260312519 206562162 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia cenocepacia J2315 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 7.813496288 7.737250463 8.245498672 8.192889774 7.929498475 8.234195751 8.134871765 8.163468528 8.396211528 58039776 ahpC Stress Oxygen stress Gluconobacter oxydans 621H superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter oxydans; 7.996809285 7.86013556 7.584816189 7.44765386 7.9413212 7.893155025 7.801352541 7.725205932 7.833460291 119376647 ChrA Metal Resistance Chromium Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 7.47836949 7.385738382 7.589530368 7.921800766 7.41922246 7.921592837 7.404551745 7.419797042 7.694419712 170293849 CopA Metal Resistance Copper Aquabacterium sp. PL1F5 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Aquabacterium; 7.501862651 8.01819729 8.492727346 8.26392265 8.206559852 8.497023776 7.985482824 8.063341403 8.201113826 163732972 grpE Stress Heat shock Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 8.165601782 7.914721333 8.024472457 8.374566742 8.724027391 8.695309565 8.329694813 8.176304015 192758066 gyrB other category gyrB Enterorhabdus mucosicola superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Enterorhabdus; 7.950783302 7.2990463 8.38662899 8.709279226 8.28426997 8.168802903 8.309387902 8.254459178 46448231 dsrA Sulphur sulfite reductase Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough 7.993455135 7.968157145 8.12194064 7.942161294 7.589071506 7.948665518 8.03875622 8.374018206 8.419622253 241463077 pilin virulence pilin Allochromatium vinosum DSM 180 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 7.486301581 7.325538976 7.481254225 7.15096245 6.810228101 7.798582025 7.305364887 7.347801487 7.27464519 127512815 cda Carbon cycling Carbon degradation Starch Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 8.388031171 8.222530649 8.693290969 8.690438729 8.4413829 8.682067023 8.560482774 8.607039873 8.664518021 8.588048747 8.21937287 283576572 BchY other category chlorophyllide reductase Rhodopseudomonas palustris DX-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.971206294 8.097349376 7.897871285 8.016024884 7.830425645 7.557527508 7.711867882 7.920572214 7.874282788 7.941279493 84043089 Catechol Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 8.24109798 8.036970003 8.05378725 8.060684206 8.498399527 8.049447424 8.153737554 8.206981104 7.705215905 91807176 nosZ Nitrogen Denitrification uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 7.061860481 7.088608652 7.216934935 108803059 trzN Organic Remediation Herbicides related compound Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 8.324995152 8.640947359 8.33214348 7.768169612 7.925938406 8.259153129 8.004066258 7.796685936 7.809155171 7.894048223 255291911 fnr Stress Oxygen stress uncultured bacterium 7.978240902 8.349867207 8.497316433 8.430109651 8.400769435 8.323451506 8.31907815 8.668969756 8.3201513 157850417 cumA Organic Remediation Aromatics Other aromatics uncultured bacterium 7.728051363 7.719858288 7.773345358 7.561243486 7.826303778 7.996763708 7.731347377 7.808262593 7.651324501 13423797 glucoamylase Carbon cycling Carbon degradation Starch Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 7.873699246 8.18026918 7.862239146 7.76769631 7.673592783 7.343911777 8.193844199 8.065498902 7.789602942 7.496029362 8.005265893 152981345 ahpC Stress Oxygen stress Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 7.204489859 7.467203378 7.531559675 7.703445243 7.512633045 7.331256286 7.489933854 268310778 sigma_24 Stress Sigma factors Thermomonospora curvata DSM 43183 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora;species:Thermomonospora curvata; 7.424757343 7.928678472 7.8679735 7.309162585 8.028789377 182412728 fnr Stress Oxygen stress Opitutus terrae PB90-1 8.710128896 8.483206699 8.832149986 8.847879789 8.697398288 8.900671714 8.787875093 8.714587863 8.615487818 8.662211229 8.459280607 167667353 clpC Stress Protein stress Anaerotruncus colihominis DSM 17241 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Anaerotruncus;species:Anaerotruncus colihominis; 8.211388278 8.412762064 8.134544325 8.154220071 7.976852625 7.895869736 8.313362598 8.210089633 8.10080087 8.2352759 7.602708928 13421552 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 8.312686175 8.358495495 7.489076414 7.499863679 8.098440449 8.286124961 7.373724754 8.55742839 7.619843761 7.794493251 8.31671025 126722254 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. HA99 7.944563767 8.342934999 7.497681209 7.07603054 7.26341639 7.059980188 7.214257337 7.835679416 7.673561461 7.297524758 7.281172623 16081197 superoxide_dismutase Bioleaching Metal Resistance Thermoplasma acidophilum DSM 1728 7.774429006 7.783134896 7.650836638 7.707395578 7.619679018 7.932850805 7.604100438 7.851784897 77732600 nhh Organic Remediation Aromatics Nitoaromatics Rhodococcus opacus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.243168912 8.311301378 7.582326513 7.700528508 8.036048711 8.243558688 8.185948637 7.799429914 7.838724033 8.028999602 254473938 Tet Antibiotic resistance other Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 8.058290754 8.023639688 7.760618927 7.535525086 7.648377726 7.830756769 7.95730698 7.888515226 70930929 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6.822268561 7.284287564 7.131947141 7.507837646 6.959426839 7.001690252 153004692 cytochrome Energy process Energy process Anaeromyxobacter sp. Fw109-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 8.226611443 8.302783681 7.963180236 7.889904705 8.528081813 8.119303622 8.192974463 8.205207283 7.7233514 256676638 sigma_24 Stress Sigma factors Streptomyces sp. SPB78 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.003366219 8.316497429 8.060825627 8.112561754 7.692835162 7.743981715 7.960590793 8.129535426 8.000919126 7.722766125 7.910209172 260886856 sigma_70 Stress Sigma factors Selenomonas sputigena ATCC 35185 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sputigena; 8.388907254 8.122317459 7.602796634 7.526673664 7.902246577 8.109912426 7.514601724 8.48344276 7.763721625 7.830502884 227374368 ahpC Stress Oxygen stress Thermobaculum terrenum ATCC BAA-798 superkingdom:Bacteria;genus:Thermobaculum;species:Thermobaculum terrenum; 7.762630141 7.421296236 7.728167121 7.472839348 7.122585969 7.88686006 7.635802358 7.350434934 7.892109259 139003164 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.570891593 7.646800367 7.65118195 7.065791565 7.616752982 7.65440207 7.666238899 7.674006464 7.350908398 118424527 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.126856179 8.201792799 7.426862871 7.627492021 7.583231115 7.802977798 7.41231457 8.270029669 7.300509773 7.271386239 7.600202239 257075721 ahpC Stress Oxygen stress Ferroplasma acidarmanus fer1 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermoplasmata;order:Thermoplasmatales;family:Ferroplasmaceae;genus:Ferroplasma;species:Ferroplasma acidarmanus; 7.122724732 7.448714266 7.058655505 7.709686382 27376430 alkK Organic Remediation Others Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.769986478 8.843142274 8.551447759 8.28381936 8.827799905 8.35397214 8.642404886 8.451831147 8.589582798 170109755 glnA Stress Nitrogen limitation Laccaria bicolor S238N-H82 8.067273046 7.96170487 8.410349707 8.520587545 8.664290352 8.304403058 8.861950189 8.81129434 8.46556199 167654233 amyA Carbon cycling Carbon degradation Starch Anaerostipes caccae DSM 14662 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Anaerostipes;species:Anaerostipes caccae; 7.791896787 7.670548744 7.869736317 7.824376958 8.093864561 8.082986801 8.30228959 7.898547423 7.961697837 53803070 SMR_antibiotics Antibiotic resistance transporter Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 7.36576572 7.782465661 8.217838665 8.419386154 7.989537299 8.213205566 7.715066848 7.911105194 7.76276035 242262602 fnr Stress Oxygen stress Clostridium cellulovorans 743B 8.030871572 8.297678272 7.363052009 7.456793038 6.985831164 7.531912615 78065512 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.990311415 8.024879657 8.266110092 7.738535125 8.066821456 8.403407208 8.074564664 8.373160178 8.081048421 162455240 oxyR Stress Oxygen stress Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 8.267007932 8.538178413 8.121642025 7.707992105 8.262472095 8.027292049 8.137668868 8.255756113 8.152291928 257051396 grpE Stress Heat shock Halorhabdus utahensis DSM 12940 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus utahensis; 7.437682198 7.941476052 7.891908244 7.252049573 7.985935009 7.22893814 7.312912797 8.041289298 110678828 sox Sulphur Sulphur oxidation Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 7.917044227 7.958402286 7.269821834 7.609738585 7.367601835 6.958107628 237758848 obgE Stress Radiation stress Corynebacterium kroppenstedtii DSM 44385 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium kroppenstedtii; 7.847179148 7.655303208 7.618240401 7.29422699 7.885855116 7.547795726 7.372410753 7.505855713 256038309 pstB Stress Phosphate limitation Chitinophaga pinensis DSM 2588 6.897884106 7.171904079 254786902 NirB Nitrogen Assimilatory N reduction Teredinibacter turnerae T7901 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 8.100383962 8.350838085 7.88654629 7.686420518 8.132453836 7.412616515 7.489375648 7.659867546 7.929306315 160346285 aoxB Metal Resistance Arsenic Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 7.39430552 7.236640331 7.165178102 7.264672875 7.210384063 7.36709609 7.161417249 7.206956207 111145990 Catechol Organic Remediation Aromatics Other aromatics Pseudomonas sp. MT1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.954682558 8.22400272 7.292449698 7.312107681 7.559867846 7.52574497 7.132571811 7.993698269 7.200913931 7.40252072 254445225 B_lactamase_C Antibiotic resistance Beta-lactamases Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 7.278731088 7.411158396 7.563839417 125713564 endoglucanase Carbon cycling Carbon degradation Cellulose Clostridium thermocellum ATCC 27405 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 8.100476231 8.644999191 7.620520885 7.7889511 7.767667966 7.329942363 7.160429244 7.485685867 7.305584786 7.766123517 78049287 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Xanthomonas campestris pv. vesicatoria str. 85-10 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas euvesicatoria; 7.809220522 7.146798637 7.45931374 7.662672126 7.595914046 7.796543567 6.955311209 7.044464723 28867247 gyrB other category gyrB Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 8.414995881 8.153061585 7.609782152 7.457116647 7.700117453 8.175752254 7.453928694 8.163826066 7.511643491 7.433182644 7.564101322 211905433 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.520960312 7.408063412 7.768428685 7.629378986 7.338496173 8.157940884 7.217570838 7.411333247 7.386312408 86567094 pcc Carbon cycling Carbon fixation Frankia sp. CcI3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.335802579 8.432708266 7.579918088 7.669791892 7.760660076 7.881792177 7.912734865 7.867917835 8.193195245 8.27431144 8.14392406 114327161 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Granulibacter bethesdensis CGDNIH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 8.145038208 8.016350371 7.26336833 7.21227623 7.498462258 7.099715591 7.068740208 221564162 TerC Metal Resistance Tellurium Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 7.438079608 7.58319411 7.305122083 7.608962555 7.265905105 7.62256989 7.760039224 7.342257594 24375124 cytochrome Energy process Energy process Shewanella oneidensis MR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella oneidensis; 8.238171033 8.432322222 7.670334698 7.49537805 7.206955897 7.308059122 7.249467811 7.225884054 148548022 phdCI Organic Remediation Aromatics Polycyclic aromatics Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.196174255 8.228739605 8.164477499 8.284029172 7.838829511 8.069327974 8.063200754 7.980508959 8.053575964 84502342 tftH Organic Remediation Aromatics Chlorinated aromatics Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 7.598651519 7.31160174 7.197432721 7.328182385 7.166202947 7.696891335 7.367645375 7.301570397 146408285 oxdB Organic Remediation Aromatics Nitoaromatics Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.654619272 7.628563094 8.043078745 7.546970501 7.990026758 7.918681115 7.780141657 7.769587442 7.58315269 226910038 SMR_antibiotics Antibiotic resistance transporter Citrobacter sp. 30_2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter; 8.288145306 8.395475224 8.177989957 8.29545918 8.722413496 8.423926645 8.680659785 8.236758655 8.550523186 28974738 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.994232234 8.174114921 7.599825328 7.770346661 7.486486301 7.166469493 7.412728517 7.701717506 7.358816813 7.429996567 7.387760867 212534722 pheA Organic Remediation Aromatics Other aromatics Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 8.197709038 8.323009872 7.848665872 7.641280778 7.464709306 7.16043436 7.006705588 7.452906848 7.12069968 7.278046667 7.3577797 264671682 glnA Stress Nitrogen limitation Caulobacter segnis ATCC 21756 7.996252357 7.923534309 7.482692469 7.386875196 8.104409131 8.446952722 7.945765611 7.71056175 7.86111641 212716664 pstB Stress Phosphate limitation Bifidobacterium catenulatum DSM 16992 8.156926827 8.375035554 7.468224765 7.439003218 7.587733494 7.899148952 7.043411209 7.956170231 7.298448221 7.230738217 7.178829658 283573886 Tet Antibiotic resistance other Desulfovibrio sp. FW1012B superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 8.187247909 8.467473832 8.230079341 8.144304589 7.861044976 7.706819026 8.131630817 8.133081578 7.864753322 7.600923379 8.078482882 152976702 pstB Stress Phosphate limitation Bacillus cereus subsp. cytotoxis NVH 391-98 7.230867265 7.106195934 254443430 mannanase Carbon cycling Carbon degradation Hemicellulose Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 7.432635876 7.254088103 7.359166572 6.588698727 6.793002987 7.085055203 7.208493244 7.522174232 240103277 ahpC Stress Oxygen stress Thermococcus gammatolerans EJ3 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus gammatolerans; 8.126187099 8.227656842 8.076790182 7.726768705 7.846592792 7.385212701 8.013652749 7.663711186 7.745396993 7.647638496 8.036970208 89512922 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.925907246 8.160313417 7.50661659 7.520825611 7.293614558 7.250209809 7.397828028 7.578930063 7.313854719 7.256480347 7.399310488 85706901 hrcA Stress Heat shock Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.548519689 8.441022811 7.781693525 7.666354151 8.068996825 168195744 oxyR Stress Oxygen stress Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 8.311898332 8.172800356 8.139285 7.960990497 7.73970229 7.624451647 8.235139389 8.338137894 7.977619851 8.12657046 89335259 nrfA Nitrogen Dissimilatory N reduction Desulfitobacterium hafniense Y51 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 8.023957925 8.063049655 7.513849725 7.269896599 7.396668536 7.024444676 7.022799117 7.471273133 7.235810288 6.869044396 7.229096127 74038456 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.807709183 7.757045635 7.88967756 7.777366876 7.615533266 8.047989407 8.065445708 7.906205948 7.747968487 98976509 TerC Metal Resistance Tellurium Sphingopyxis alaskensis RB2256 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 7.246420905 8.271487969 7.757843141 7.644254836 7.499387256 8.349107534 7.425251277 7.531958273 7.720232012 90412339 MFS_antibiotic Antibiotic resistance transporter Photobacterium profundum 3TCK superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 7.691028317 7.423610007 7.332292894 7.013975341 7.093698758 7.764731906 7.568542446 7.307451672 7.413131833 68263268 alkK Organic Remediation Others Corynebacterium jeikeium K411 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 7.376518453 7.676228532 8.019185098 8.854379944 8.381194251 7.920161059 8.109217077 8.126437775 120595003 xlnD Organic Remediation Aromatics Other aromatics Polaromonas naphthalenivorans CJ2 7.719237268 7.925050417 8.123094192 8.103672204 7.728303567 8.227585601 8.079218711 8.045037638 7.870494162 229740613 grpE Stress Heat shock Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 7.203508055 7.702585025 7.038652004 7.00819839 158110914 tfdA Organic Remediation Aromatics Chlorinated aromatics Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 7.657556224 7.655908318 7.842633295 7.512070764 7.442518475 7.498405212 8.011580359 237691054 pstB Stress Phosphate limitation Sulfurihydrogenibium yellowstonense SS-5 7.751682568 8.13954216 7.221908747 7.173282507 6.716313326 7.529155161 7.169553811 6.866067596 7.265655188 110595751 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 7.484987748 8.043255706 8.050345148 8.115950766 7.283740236 7.582358815 7.569228314 7.581180411 146302598 fnr Stress Oxygen stress Flavobacterium johnsoniae UW101 7.449779346 7.586288657 7.324058245 7.505578638 7.525419918 269829626 vip virulence virulence protein Vibrio alginolyticus 40B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 7.333931575 7.521239173 7.543524534 7.398405488 7.364099508 7.642580957 7.6355003 7.398961359 7.412967158 145249108 endoglucanase Carbon cycling Carbon degradation Cellulose Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8.0545225 8.310196018 7.083159376 7.305543236 7.632682538 7.265651306 7.316906117 7.365929788 7.364550135 94967932 xylA Carbon cycling Carbon degradation Hemicellulose Acidobacteria bacterium Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 8.234170819 8.029481453 8.982396714 8.349243154 8.71204971 7.843961846 8.616834932 8.032276224 8.182399824 8.397247213 8.108339882 170122259 SMR_antibiotics Antibiotic resistance transporter Escherichia albertii TW07627 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 7.759828185 8.105326519 139478511 mer Metal Resistance Mercury uncultured soil bacterium superkingdom:Bacteria; 7.300279099 7.092104175 7.579682614 7.811785587 7.501069163 8.109436951 7.667917135 7.487213591 170751160 atzD Organic Remediation Herbicides related compound Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 8.196443455 8.545555727 8.313727562 7.901095635 7.440450492 8.000991949 8.129723712 8.360896787 8.121737739 7.811249036 8.301351557 218333148 phytase Phosphorus Phosphorus utilization Hafnia alvei superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Hafnia; 8.160663705 8.062172638 7.907630647 7.781958756 8.227261069 8.298355027 7.9853774 7.971854863 8.079651965 29342023 catB Organic Remediation Aromatics BTEX and related aromatics Bacteroides thetaiotaomicron VPI-5482 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides thetaiotaomicron; 7.59483703 7.56063714 7.675163919 7.529457074 7.32447425 7.973765321 7.375072203 7.618967725 7.753820835 94554476 phoB Stress Phosphate limitation Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 8.44123488 7.485076063 8.051350181 7.516123894 8.254345406 7.903345038 8.187643516 8.123568843 184196314 MFS_antibiotic Antibiotic resistance transporter Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.072265634 8.092575378 7.875318108 7.397589662 7.402155243 8.20204679 7.290768824 7.46129762 113476277 ChrA Metal Resistance Chromium Trichodesmium erythraeum IMS101 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Trichodesmium;species:Trichodesmium erythraeum; 8.056421249 7.798005808 8.091274971 7.476604463 7.996701921 7.784298846 7.95103882 8.080705186 7.778330811 154161994 CopA Metal Resistance Copper Xanthobacter autotrophicus Py2 7.361581077 7.147884295 7.726162758 7.320023401 7.774658997 7.739260961 7.773638142 223893361 sigma_24 Stress Sigma factors bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 7.924754561 7.866257946 7.958117783 7.68434347 8.143927886 7.943797376 7.743423316 8.067067923 116672142 atzC Organic Remediation Herbicides related compound Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8.254084116 8.634130682 8.068414179 7.791060673 7.898461788 8.208511716 8.221274989 7.95827409 7.609818092 8.078115897 254487645 AceB Carbon cycling Carbon degradation others Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.18754857 8.151683367 7.801787316 7.504875305 7.733195375 7.628443785 7.495759518 7.272752507 7.55627635 7.773084227 221230711 fnr Stress Oxygen stress Mycobacterium leprae Br4923 7.682772617 7.729329086 7.502642696 7.175305808 7.491772182 7.699692225 7.414463531 7.103461111 7.207430953 120609090 silC Metal Resistance Silver Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 8.112336184 8.325241277 7.77949466 7.99807085 7.890878922 8.18548831 8.099621229 8.357540553 8.342531698 8.450678312 8.108496537 258404383 dsrB Sulphur sulfite reductase Desulfohalobium retbaense DSM 5692 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium;species:Desulfohalobium retbaense; 6.802356404 6.989754555 7.298461531 219675917 sox Sulphur Sulphur oxidation gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.220178646 7.971797302 7.810375176 7.774687365 7.92626374 8.074834995 7.99226051 8.084138965 7.567076231 211591782 BpH Organic Remediation Aromatics Aromatic carboxylic acid Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 7.805381242 7.770405639 7.392942099 7.430036425 7.274233474 8.156402956 7.905192352 7.670452809 7.611854798 118705995 exaA Organic Remediation Chlorinated solvents Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.203837513 8.156333197 7.292695198 7.400238144 7.918243505 8.051328915 7.267899451 7.467519976 7.28106928 7.778605678 158312048 gdh Nitrogen Ammonification Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.272349225 8.405316829 7.578817449 7.565280906 7.867094423 7.713143126 7.587675824 7.747120076 7.55557805 116013350 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.679475118 7.868845946 8.180551616 8.584633886 8.073427296 8.183170087 7.738923712 8.00353819 7.789866241 124113453 amyA Carbon cycling Carbon degradation Starch Vibrio cholerae 1587 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 7.390203218 7.230456533 7.065974763 6.805565403 6.949371986 118171930 nhh Organic Remediation Aromatics Nitoaromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.559162215 8.628972766 8.588420423 8.427047755 8.34039693 8.035408987 8.559200931 8.576509131 8.507158213 8.284720208 8.244638779 192764468 narG Nitrogen Denitrification uncultured bacterium 8.317932399 8.18129713 7.955949815 8.17537608 8.563705605 8.26324419 8.186730005 8.135427134 8.330350746 91206185 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Rickettsia bellii RML369-C superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales;family:Rickettsiaceae;genus:Rickettsia;species:Rickettsia bellii; 8.025759836 8.099669089 7.574965209 7.505931722 7.388254345 7.223232832 7.560572484 7.640279997 7.344350654 7.25617325 7.488357022 188028831 catB Organic Remediation Aromatics BTEX and related aromatics Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 8.400280033 8.014838241 7.349228789 7.729090888 8.095371601 8.310167046 7.917025706 8.008378001 7.798237385 7.600444835 8.091720384 261361245 exoglucanase Carbon cycling Carbon degradation Cellulose Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Phyllachorales;genus:Verticillium;species:Verticillium albo-atrum; 9.137634357 9.341088586 8.883555558 8.725489616 8.660330113 8.700763647 8.820173289 8.768308298 8.795771359 8.849766699 8.954140886 158332278 Arylest Organic Remediation Aromatics Other aromatics Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 7.907874701 7.859505958 7.910860725 7.34804855 7.647815907 7.618253344 7.707957423 7.899447591 7.550865213 154149633 ahpF Stress Oxygen stress Candidatus Methanoregula boonei 6A8 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;genus:Candidatus Methanoregula;species:Candidatus Methanoregula boonei; 7.86582345 8.047950353 7.798906048 8843720 bphC Organic Remediation Aromatics Polycyclic aromatics Burkholderia sp. TSN101 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.774600935 7.311771553 7.528546938 8.069930191 7.48382661 7.971048875 7.356853152 7.292334763 7.429989408 145586710 linB Organic Remediation Pesticides related compound Rhodopirellula baltica superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula; 8.27882257 7.954011013 7.832096715 8.106554842 7.839552675 8.339934806 7.979823646 7.879732433 119773786 nrfA Nitrogen Dissimilatory N reduction Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 7.54361999 7.431505759 7.654103183 8.077489101 7.800925166 8.30385533 7.421544715 7.590561396 7.746758352 209883654 oxyR Stress Oxygen stress Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 8.174508352 8.215182314 7.383052502 7.493174064 7.58666057 7.670697138 7.530854681 7.532703037 161485966 hrcA Stress Heat shock Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 8.385251901 8.383981966 7.700802607 7.790548824 8.500667195 8.720951451 8.037593974 8.289364369 7.839832931 7.724023664 8.239142401 3089609 pulA Carbon cycling Carbon degradation Starch Thermus sp. IM6501 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus; 7.557012674 7.382061991 8.047166538 8.414374396 7.88962885 8.087033838 7.834437692 7.824028126 7.755513844 37779193 dnaK Stress Heat shock Ruminococcus flavefaciens 7.92748045 7.996095454 7.820392962 7.906115649 7.640457479 7.316447409 7.283490924 8.060866684 7.857142568 7.46075375 7.358288525 227076291 glnA Stress Nitrogen limitation Corynebacterium accolens ATCC 49725 7.325695578 7.467637042 7.565263944 7.283457669 606839 B_lactamase_C Antibiotic resistance Beta-lactamases superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas; 8.334943539 8.276873438 7.316698933 7.497455361 7.5465296 7.575199806 6.918905272 7.457937312 7.294196286 7.686462394 149278229 MFS_antibiotic Antibiotic resistance transporter Pedobacter sp. BAL39 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter; 7.81781272 8.410919706 6.736694917 7.680647211 7.093333051 6.903421231 78223332 pchCF Organic Remediation Aromatics BTEX and related aromatics Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 6.99052305 7.313909007 118473855 B_lactamase_C Antibiotic resistance Beta-lactamases Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.189986504 8.256590872 8.174224672 8.147957676 8.662090649 8.467082778 8.509683485 8.595183654 8.438589255 149377535 glnA Stress Nitrogen limitation Marinobacter algicola DG893 8.354049017 8.157224672 7.967351256 8.44644865 8.364455559 8.294285878 8.314646975 8.326333898 7.665175259 170696633 silC Metal Resistance Silver Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 8.639137844 8.643480786 7.990432676 7.647878081 7.968604425 8.081442853 7.981773476 7.884946744 8.24539685 257065193 ahpC Stress Oxygen stress Slackia heliotrinireducens DSM 20476 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Slackia;species:Slackia heliotrinireducens; 8.813063283 8.553494713 8.325045683 8.248061188 8.031820986 7.77323279 8.024958104 8.150020379 7.921584275 7.991899859 8.489111751 171911086 pstB Stress Phosphate limitation Verrucomicrobium spinosum DSM 4136 7.799399099 7.750008775 7.866155081 7.321583098 8.022424631 7.701759498 7.773997858 7.769545144 7.875119794 60476357 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.093369691 6.791754932 7.215722255 229328094 pilin virulence pilin Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 7.832619279 8.00703702 7.406052577 7.360912137 6.970097662 6.526286455 7.649315458 146403580 phn Organic Remediation Herbicides related compound Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 8.571407875 8.577560461 8.439399137 7.959510047 8.590012633 8.467568407 8.08844952 8.187581635 8.58688375 27353551 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.911798838 7.722959133 8.005851002 8.368319026 8.115041476 8.515069552 8.140072574 8.208588189 8.303992808 212661485 TerC Metal Resistance Tellurium Bifidobacterium catenulatum DSM 16992 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium catenulatum; 8.08865026 8.110382326 6.684871561 7.501195297 213923822 ppx Phosphorus Phosphorus utilization Pseudomonas syringae pv. tomato T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 7.561302321 7.680052503 7.770416407 7.644291591 7.799820563 7.984611001 8.172361069 228471267 ppk Phosphorus Phosphorus utilization Porphyromonas uenonis 60-3 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas;species:Porphyromonas uenonis; 7.671625822 7.450987235 7.254272765 7.201591384 7.585923384 7.74906767 7.558946922 7.268737516 7.629066546 239910301 apu Carbon cycling Carbon degradation Starch Thermococcus gammatolerans EJ3 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus gammatolerans; 7.483500143 7.441215648 7.515019459 7.797428624 7.415451619 7.457731128 7.346180763 7.769332417 167594203 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 6.978160848 7.18477306 7.182819245 6.959704046 7.49336996 7.032739314 6.769249277 7.4313352 27228498 cbdA Organic Remediation Aromatics Chlorinated aromatics Pseudomonas resinovorans 8.369736103 8.241402593 8.134847591 8.204726727 8.337087676 8.385387608 8.157604119 7.950018028 7.92993568 8.25747431 7.860789228 148499256 MFS_antibiotic Antibiotic resistance transporter Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 7.451844403 7.551423444 7.656453983 7.513796452 7.353921222 7.880910212 7.62067348 7.670489135 7.80061877 115390603 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 9.355998373 9.274858293 8.383990644 8.350238991 8.398730713 8.399527987 8.277051893 8.277167106 8.334638962 8.553959805 8.672839458 117992518 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.473549732 7.698901238 7.698808865 8.237618034 7.199674108 7.50667448 7.473201169 7.841260909 253998733 phoA Stress Phosphate limitation Methylovorus sp. SIP3-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylovorus; 7.635595733 7.900618285 7.782007023 7.521779617 7.737892636 7.8719751 7.863631652 7.759184798 7.536099408 23978263 gyrB other category gyrB Fischerella muscicola superkingdom:Bacteria;phylum:Cyanobacteria;order:Stigonematales;genus:Fischerella;species:Fischerella muscicola; 7.201279916 7.087699743 7.260912668 7.54738027 6.825139347 7.661575958 6.958204096 7.216965691 213923808 katE Stress Oxygen stress Pseudomonas syringae pv. tomato T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 7.170907589 7.258424561 7.539899758 7.27901696 6.762676585 7.927140375 7.462018251 6.954641956 7.043330169 452453 nirS Nitrogen Denitrification Paracoccus denitrificans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.070873208 7.81472882 7.799504198 7.671323893 7.804156589 7.692288092 7.847715684 7.872906266 7.629641435 167569661 sigma_24 Stress Sigma factors Burkholderia oklahomensis C6786 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia oklahomensis; 8.285609896 7.972257732 7.670047246 7.752317632 8.126246865 8.085845657 8.11092172 8.102771374 7.986674127 127510954 pimF Organic Remediation Aromatics Aromatic carboxylic acid Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 7.449458184 7.333382697 7.661504124 7.075097619 7.881938354 7.299044606 7.42682679 7.523790939 146339587 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.887000496 8.96780602 8.813528016 8.833278857 8.791879593 8.709085438 8.823084286 8.980680758 8.868201577 8.874925196 66043985 pilin virulence pilin Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 7.915738132 8.209239819 7.66723996 7.502489236 7.539076261 7.894895062 7.874308936 7.903155738 7.576562952 7.795146233 38637937 fnr Stress Oxygen stress Ralstonia eutropha H16 7.252865908 7.06017749 7.49014864 7.189664055 7.140192266 7.58228109 7.432806876 67515879 exochitinase Carbon cycling Carbon degradation Chitin Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 6.615787079 7.473437478 6.868126251 6.774712651 268680166 sigma_70 Stress Sigma factors Sulfurospirillum deleyianum DSM 6946 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Sulfurospirillum;species:Sulfurospirillum deleyianum; 8.494054491 8.425320192 7.764462942 8.453273825 8.408230263 8.530817042 8.428783155 8.412086259 8.41639122 8.33038623 218221097 cda Carbon cycling Carbon degradation Starch Mitsuokella multacida DSM 20544 6.864924945 7.599148067 7.703845594 7.194460539 8.002409446 7.002119454 7.413462631 99083093 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.458647442 7.066231814 7.287257524 7.081984348 7.11860147 7.420345672 7.035170489 7.153762354 7.45205263 215427673 linB Organic Remediation Pesticides related compound Mycobacterium tuberculosis T92 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 7.415213614 7.936641437 8.051060393 8.144977236 7.589532687 8.16151455 8.237662558 8.063622307 144936 glnA Stress Nitrogen limitation 7.220536648 7.655331499 7.764874676 7.22996467 7.332035486 7.724842858 115399110 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.847526636 8.060434967 7.10465455 7.03676515 7.011712947 7.327007343 7.751127753 68567762 GAPDH Bioleaching Carbon fixation Sulfolobus acidocaldarius DSM 639 7.047677201 7.283331871 7.050382804 158443455 cda Carbon cycling Carbon degradation Starch Faecalibacterium prausnitzii M21/2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Faecalibacterium;species:Faecalibacterium prausnitzii; 7.63368456 7.514152536 8.348208372 8.65759665 8.154151133 8.152976394 8.334362496 8.005193082 77684592 gyrB other category gyrB Alkaliphilus metalliredigenes QYMF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus metalliredigens; 7.461691758 7.245187369 7.475702746 7.394864673 7.632328726 50120161 Arylest Organic Remediation Aromatics Other aromatics Erwinia carotovora subsp. atroseptica SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 7.620656226 7.600971517 7.681357824 7.347181841 7.670667022 7.72441373 7.798884321 37726808 dsrB Sulphur sulfite reductase uncultured prokaryote 7.253759863 7.532895448 7.706172222 7.478576109 7.785780384 7.585104136 7.374345484 7.657955752 157917943 glnA Stress Nitrogen limitation Salinispora arenicola CNS-205 8.299274863 7.947583236 7.160913072 7.449413469 7.447930381 7.609522261 6.910967055 7.947367118 7.322280942 6.904102663 7.441989576 3157506 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 8.084878295 8.492534059 7.929596864 7.869577215 7.723205369 120326591 ahpF Stress Oxygen stress Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 7.491911421 7.343105029 8.076586257 7.989977229 7.743120161 8.47780219 7.664325806 7.595333527 7.959052205 241771394 ahpF Stress Oxygen stress Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 8.411049838 8.378814652 8.24592168 7.835034076 8.598429744 8.125078313 8.252525978 8.22533825 8.148097438 71369130 CODH Carbon cycling Carbon fixation Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.889420215 8.923812034 7.667595323 8.269190758 8.677010916 8.959207279 8.130367737 8.865232162 8.489019868 8.527538511 8.45100504 126637014 TehB Metal Resistance Tellurium Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 8.294018385 8.280182917 8.283591672 8.152153037 8.097797874 8.029793668 8.345929729 8.093252454 8.32057599 8.304747763 8.445763634 163745795 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 7.134124344 7.163732561 116622178 exaA Organic Remediation Chlorinated solvents Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 7.259896203 7.808109112 7.902703943 7.40840841 7.81511386 7.588153912 29466070 norB Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.012738281 8.015996925 8.014049637 7.676197837 7.87327172 8.010680375 7.661491763 7.736986352 7.336032252 116491056 gyrB other category gyrB Oenococcus oeni PSU-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Oenococcus;species:Oenococcus oeni; 7.365377097 7.183967103 7.234816876 7.253798927 7.505366583 56388554 sox Sulphur Sulphur oxidation Rhodovulum sulfidophilum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodovulum; 8.426180163 8.48834311 8.167632096 8.62047096 8.773715269 8.424212602 8.660854932 8.472244032 8.036999423 187918734 B_lactamase_A Antibiotic resistance Beta-lactamases Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 9.236082864 8.79514778 8.419393323 8.531080853 9.207069818 8.146049823 9.184868627 8.138786227 8.198086491 8.479845309 154685508 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 8.002936934 7.982022634 7.645701964 7.639535889 7.667625045 7.678448376 7.809159521 7.81531552 7.991420361 7.749075838 7.63487568 82410035 hly virulence hemolysin Nitrosospira multiformis ATCC 25196 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira;species:Nitrosospira multiformis; 7.260452186 7.076231395 7.381484443 7.146448727 6.883978349 7.561852315 7.024026877 7.059557659 146338144 ureC Nitrogen Ammonification Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.06167632 7.872966234 7.291335521 7.268306115 7.463044477 7.110735337 6.905842616 77381896 SMR_antibiotics Antibiotic resistance transporter Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.367373043 8.530327652 8.318031116 8.306483549 8.469631659 8.244882925 111018855 pcpE Organic Remediation Herbicides related compound Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.142368276 8.14895696 8.109520246 7.763668671 7.856930965 7.735331019 8.12410714 7.928263493 8.02142401 7.926637066 7.77028681 46445504 ZntA Metal Resistance Zinc Candida albicans SC5314 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;genus:Candida;species:Candida albicans; 7.492298883 7.351110778 16125967 pimF Organic Remediation Aromatics Aromatic carboxylic acid Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 7.008460766 7.061829393 154244567 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 7.69258563 7.382540055 8.072133974 7.579922737 7.478372866 7.709229749 7.645731878 116235163 nosZ Nitrogen Denitrification Brachymonas denitrificans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Brachymonas; 8.527963982 8.415870751 7.699279179 7.787437844 7.820321015 8.147892347 7.664424925 8.531565857 7.667995214 7.608366892 7.819045712 93006960 TerD Metal Resistance Tellurium Psychrobacter cryohalolentis K5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter cryohalolentis; 8.172182026 8.317229922 8.213265507 7.918808683 7.83843514 8.265612813 7.977486392 7.793580601 7.519025517 55230727 narG Nitrogen Denitrification Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 7.949463117 8.172974964 8.385474793 8.18404545 8.203088215 7.70934213 8.489958698 8.156062321 8.051121527 7.864440418 8.20526567 156618678 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Verrucomicrobia;order:Methylacidiphilales;family:Methylacidiphilaceae;genus:Methylacidiphilum; 8.221301502 8.423863197 7.702610391 8.464126981 8.239268915 7.310084034 8.021252851 7.781137017 7.829382989 8.110591478 8.426913625 261212392 endochitinase Carbon cycling Carbon degradation Chitin Vibrio sp. RC341 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.255159663 7.236117119 184203743 CopA Metal Resistance Copper bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 8.065685233 8.175230387 7.66830247 7.732181959 7.755456189 7.759897345 7.728497099 7.961875223 7.550611403 7.424659352 8.049222856 24421471 nirS Nitrogen Denitrification uncultured organism 8.328338588 8.092857778 7.29008278 7.368382402 7.434990333 7.172925692 7.134239354 7.099774565 7.228027923 7.812937707 119858017 amyA Carbon cycling Carbon degradation Starch Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.093234339 8.059796514 7.498721966 7.510129231 7.24296366 7.47930857 7.329598016 7.694859596 157914111 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 8.089125982 8.351093359 8.504136126 8.465502156 8.188938178 8.319449894 8.424590591 8.364483657 88781209 nbaC Organic Remediation Aromatics Nitoaromatics Polaribacter irgensii 23-P superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Polaribacter;species:Polaribacter irgensii; 7.779221476 7.76840705 152999359 cytochrome Energy process Energy process Shewanella baltica OS185 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 8.425744279 8.299618229 8.595792978 8.512952154 8.391183975 8.599516838 8.463427394 8.54401738 8.645788289 8.487108822 7.938974262 145320054 TerC Metal Resistance Tellurium Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 8.113590037 7.84131243 7.812217943 7.475182032 7.564073388 7.968168239 7.861131988 7.699452523 7.94651313 149811582 ChrA Metal Resistance Chromium Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.460300195 8.566653368 8.737023024 8.728796037 8.804336884 8.605457487 8.598499669 8.896863317 8.191668631 8.503456154 8.176264019 120563804 dsrA Sulphur sulfite reductase Desulfovibrio vulgaris subsp. vulgaris DP4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 8.454274254 8.580702273 8.13906732 8.138278871 7.942604843 8.132079605 7.830761525 7.834442422 8.027172056 7.890005447 154322839 tfdA Organic Remediation Aromatics Chlorinated aromatics Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 7.760510454 7.381837206 7.407982228 7.40450822 7.562156548 89512868 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.184320928 8.132828407 7.196334885 6.972087697 7.024588475 6.700682361 6.422627104 7.361632771 6.857294319 7.027483749 283823648 sigma_70 Stress Sigma factors Rhodomicrobium vannielii ATCC 17100 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 8.103059838 8.200092186 7.649669035 8.204907655 7.988541279 7.812348369 7.279289984 7.683240584 7.437553617 219994847 APS_AprB Sulphur adenylylsulfate reductase Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 7.163381226 7.478680818 7.562168515 7.365541373 7.20754842 7.528180294 7.067820998 7.570587559 158442685 hrcA Stress Heat shock Faecalibacterium prausnitzii M21/2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Faecalibacterium;species:Faecalibacterium prausnitzii; 8.175224766 8.16632131 7.860094159 7.401477584 8.002015538 7.991239427 7.752540455 7.685246994 7.672043504 121720124 BpH Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 8.389429453 8.440514354 7.750185345 7.443252174 7.577089866 7.799744518 7.416072972 7.671492995 7.304335761 7.774312008 21647835 cydB Stress Oxygen limitation Chlorobium tepidum TLS superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 7.80865642 7.797663856 7.903845954 7.256568025 7.470198455 7.214790868 7.590627339 268592383 type_III_secretion virulence secretion Providencia rettgeri DSM 1131 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rettgeri; 7.050482557 7.017446923 7.127276294 6.806248599 6.794576298 7.345240173 7.200241214 7.066573502 7.284293701 283846323 hly virulence hemolysin Bacillus cellulosilyticus DSM 2522 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cellulosilyticus; 7.736974931 8.079068892 6.964034335 6.941270993 157679413 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.802079397 8.264098774 7.166848698 6.959391636 7.431162356 7.160946314 7.481681796 7.050435585 7.297260998 7.521179581 126315021 pcc Carbon cycling Carbon fixation Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.497292294 8.214423291 7.939039659 7.866854219 8.371126331 8.46890088 8.251766951 8.78704859 8.207756601 8.117206258 8.139175634 218149619 tutFDG Organic Remediation Aromatics BTEX and related aromatics Desulfovibrio salexigens DSM 2638 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio salexigens; 8.263010106 8.597788678 7.853921014 7.74194388 7.779790519 8.082506125 8.701354743 7.412916586 8.871213174 8.410751254 8.708056774 160364832 proO Organic Remediation Aromatics Other aromatics Delftia acidovorans SPH-1 8.013301376 8.130827311 7.291371349 7.099075096 7.640764572 7.425564279 6.908462814 7.251537356 7.239232736 7.810924273 149125119 HBH Organic Remediation Aromatics BTEX and related aromatics Methylobacterium sp. 4-46 9.379798824 8.378481573 8.758891744 9.010753994 9.186234 8.91120088 9.248530509 157285618 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 8.27699919 8.398494101 8.068337882 8.190242284 7.797982343 7.914580927 8.461028764 8.167336726 8.256421224 8.530792757 8.579136636 6562871 oxyR Stress Oxygen stress Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 7.860501861 7.569994002 7.449402989 7.468926044 7.634556557 7.356405999 7.428832132 46307864 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.380181571 8.638692475 7.978232889 8.043264371 7.733029673 8.719665993 8.076819206 8.218003561 8.263486366 7.93603957 35213157 clpC Stress Protein stress Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 7.865060719 8.073758611 8.12251881 8.226013917 8.177871123 8.235650588 8.154285268 8.136394399 262274944 arcA Stress Oxygen limitation Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;species:Grimontia hollisae; 8.18135699 8.264789197 7.52391186 7.852791945 7.517777064 7.846931918 7.938665688 8.123333413 7.587546203 7.850191108 7.619690092 146402771 cytochrome_c Bioleaching Electron transport Acidiphilium cryptum JF-5 7.854702589 7.755842579 7.545115659 7.226212474 7.610779281 7.594940499 7.291978482 7.214725386 7.525779965 171851201 ppx Phosphorus Phosphorus utilization Corynebacterium urealyticum DSM 7109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium urealyticum; 7.549655061 8.630302013 8.347238565 8.234589306 8.463558501 8.399631808 8.128688323 8.208442748 7.972769299 256752000 pstB Stress Phosphate limitation Thermoanaerobacter ethanolicus CCSD1 7.94096364 8.252858058 7.360651691 7.184366286 7.274711186 6.912381749 6.921813266 7.58679032 7.47855465 7.121557399 7.435027601 238794434 proV Stress Osmotic stress Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 8.855962801 9.023098795 8.424511315 8.150236457 8.041032132 8.028955247 7.777578633 8.510632113 8.291361744 8.277198247 8.052684681 114548383 gyrB other category gyrB alpha proteobacterium HTCC2255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.187369866 7.312767732 6.711476784 6.816885728 7.462734784 7.13866982 8.170298536 110598476 amyA Carbon cycling Carbon degradation Starch Chlorobium ferrooxidans DSM 13031 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium ferrooxidans; 7.85477396 7.809209441 7.721669663 8.067715883 7.643739053 7.79267627 8.08836086 251855697 sigma_24 Stress Sigma factors Prevotella melaninogenica ATCC 25845 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella melaninogenica; 7.42952945 7.725671859 7.913061992 7.512065816 8.098873738 7.644479298 7.910080077 7.786591232 7.767221154 71733646 atzB Organic Remediation Herbicides related compound Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 7.34081306 7.321539693 7.412877409 6.966726771 7.165850847 7.564260268 7.217396035 7.302706696 7.35355306 229876626 glnA Stress Nitrogen limitation Sphaerobacter thermophilus DSM 20745 7.244827057 7.557212972 7.64351521 7.583793888 7.248526794 7.741739097 7.196924602 7.274151384 7.293563994 254354836 obgE Stress Radiation stress Legionella drancourtii LLAP12 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella;species:Legionella drancourtii; 7.766893039 7.884713517 7.769146164 7.561461919 7.554527171 7.96985625 8.395062432 8.507410002 8.200951623 159044969 sigma_24 Stress Sigma factors Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 8.181990168 8.163173598 7.47954817 7.766664089 7.697484051 8.213824789 7.878441159 8.326007116 7.988341763 7.980014058 7.83199243 167354839 pcc Carbon cycling Carbon fixation Shewanella halifaxensis HAW-EB4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella halifaxensis; 8.022628862 7.578750264 7.397908695 7.577476607 7.716564717 7.719938964 7.552686558 7.586903144 90310036 atzA Organic Remediation Herbicides related compound Psychromonas sp. CNPT3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas; 7.782142675 8.025253953 223692658 pstB Stress Phosphate limitation Desulfobacterium autotrophicum HRM2 7.893585395 8.259540822 7.463244089 7.367966921 7.313375459 7.023166166 7.086990609 7.55672549 7.177081601 6.933765149 6.969119654 134133140 TerZ Metal Resistance Tellurium Burkholderia vietnamiensis G4 7.769949932 8.172916735 7.315506613 7.117009432 7.536839042 7.491146874 7.284570827 7.827021789 7.35774621 7.115334114 7.624881526 94553372 sigma_38 Stress Sigma factors Candidatus Koribacter versatilis Ellin345 8.359212019 8.266529017 7.212409859 7.61585481 7.647111827 7.770282992 7.332726385 8.046205748 7.50083169 7.384771654 7.499019754 78060999 bbsG Organic Remediation Aromatics BTEX and related aromatics Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.507227859 8.279408638 7.69234782 8.255841927 8.266278562 8.019090896 8.088669021 8.108979459 7.609994897 115421541 katE Stress Oxygen stress Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 8.19199187 8.192179887 8.040720064 7.439309954 8.25526163 8.51381276 7.735095738 8.546526251 7.912469182 7.816298658 8.441821054 220714191 CopA Metal Resistance Copper Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 6.940391152 6.783559477 118175275 nagG Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.227965712 7.810900569 7.659211106 7.777469051 7.646024434 7.801234644 7.677779325 7.887380986 7.123188598 218761426 tutFDG Organic Remediation Aromatics BTEX and related aromatics Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 7.555732524 7.534129585 7.386647338 7.425379105 7.634327671 7.583080641 56178864 sigma_38 Stress Sigma factors Idiomarina loihiensis L2TR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina loihiensis; 7.96131309 8.006157324 88814950 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid marine actinobacterium PHSC20C1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 7.655616402 8.163084397 8.257741228 8.468580491 7.882905701 8.193054862 7.797439923 7.82005022 7.695368626 194366560 SMR_antibiotics Antibiotic resistance transporter Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 7.346918775 7.457501071 7.335279116 7.377615243 7.210079985 7.597134505 7.54633212 7.223478993 260437114 obgE Stress Radiation stress Butyrivibrio crossotus DSM 2876 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Butyrivibrio;species:Butyrivibrio crossotus; 8.224122368 8.224478153 7.63379729 7.043847896 7.154815593 217318478 TerD Metal Resistance Tellurium Escherichia coli O157:H7 str. TW14588 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 8.337591156 8.711162001 8.359395312 8.195052252 8.066418836 7.925825245 8.272163302 7.923014592 8.375173595 8.344553758 8.459954494 241758558 sigma_32 Stress Sigma factors Neisseria flavescens SK114 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria flavescens; 7.990193927 7.584586314 7.204393255 7.939123369 7.623247629 8.086214184 7.297302945 7.147568391 219542813 obgE Stress Radiation stress Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 7.777396624 7.97332085 7.056645541 7.446010512 6.914079223 7.134818144 7.798543578 7.219910455 7.123810028 6.875022697 28872589 pstB Stress Phosphate limitation Pseudomonas syringae pv. tomato str. DC3000 7.30297479 7.604218912 7.818241912 7.87790109 7.997806936 15613955 ppk Phosphorus Phosphorus utilization Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 7.988883458 8.015683133 7.540003982 7.608304765 7.703568709 7.464961138 7.734096996 7.848198555 7.809640015 7.890792324 7.73245547 284007679 inv virulence invasion Arsenophonus nasoniae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Arsenophonus; 7.899663079 7.602302117 7.267463792 7.697917178 7.400598961 7.875830279 7.339735762 7.381804282 119671220 nagG Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. BH72 8.31825797 8.596135792 8.572896489 8.618083123 8.808410765 8.448996532 8.761957813 8.416002301 8.587346444 8.696707918 8.297236716 261345708 nrfA Nitrogen Dissimilatory N reduction Providencia rustigianii DSM 4541 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 7.0961544 7.061565733 153838684 phoA Stress Phosphate limitation Vibrio parahaemolyticus AQ3810 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.236726208 7.183432097 7.309029337 6.774957904 6.569900031 7.572523518 7.353730715 7.128353666 7.660897616 3367751 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.340513989 8.645463711 7.989123942 8.549298642 8.888611914 7.746362216 8.257333178 8.074006582 88812205 ChrA Metal Resistance Chromium Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 7.891932757 8.078275913 8.554315425 8.452828136 7.977343563 8.627421773 8.548672469 8.227520927 8.234871903 8.302259592 7.858530439 121301062 phn Organic Remediation Herbicides related compound Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 7.387228865 7.192170965 6.895456799 7.049444244 7.162147603 6.995804534 114320495 sigma_24 Stress Sigma factors Alkalilimnicola ehrlichii MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 7.832338501 7.731381111 7.807931203 8.293489052 7.952231014 8.35856038 7.676664411 7.917080124 8.137203489 146397161 pimF Organic Remediation Aromatics Aromatic carboxylic acid Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 7.531339488 7.467928906 7.253594759 7.299928767 7.216819386 7.703527962 116204107 nitA Organic Remediation Aromatics Other aromatics Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 7.527431274 7.677758317 8.18944078 7.929911593 7.642098992 8.227270899 7.620696851 7.810689898 7.822826084 149143059 AmiE Organic Remediation Aromatics Other aromatics Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.623848624 7.86645543 7.793119787 7.955402784 8.012360588 8.245534241 8.115930675 8.153854408 211638730 CueO Metal Resistance Copper Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus asymbiotica; 7.971987491 8.198927698 7.605578 7.674315135 7.795379726 7.638865857 7.466572271 7.698839085 7.872401956 7.323173698 7.456906037 194308666 grpE Stress Heat shock Pelodictyon phaeoclathratiforme BU-1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 8.355120539 8.35062372 7.766203857 7.634421244 7.954995036 7.417590815 8.230650259 7.661702934 7.626273192 7.923052688 119391501 narG Nitrogen Denitrification uncultured bacterium 8.475340982 8.151483227 8.009972822 8.457311205 8.361490341 8.588329756 8.369571524 8.417916068 8.349467497 75429458 gyrB other category gyrB Actinobacillus succinogenes 130Z superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus succinogenes; 7.353097442 7.569503508 7.536467218 7.097408764 7.255896143 7.392987244 7.290173778 34105045 ahpC Stress Oxygen stress Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 8.254264967 7.579911183 8.242618007 7.78886714 7.529362863 228471226 sigma_70 Stress Sigma factors Porphyromonas uenonis 60-3 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas;species:Porphyromonas uenonis; 7.351203143 7.511654315 7.010549527 7.570522584 7.387846758 7.381675365 119401909 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 8.493452747 8.84363943 8.638941925 8.479403866 8.094388693 8.308005322 8.764516478 8.512890925 8.64979074 8.627243636 8.702904599 146299050 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 7.299985624 7.535723522 7.372364853 7.836554927 7.605460622 7.672595409 7.418074736 7.557781855 7.453833781 26278684 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.132679121 8.056218902 7.481488224 7.772388739 7.743977967 7.643506535 7.484932575 7.968508035 7.391585442 7.587775085 7.677190104 114050077 arsB Metal Resistance Arsenic Streptomyces ambofaciens superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.307516546 8.309536254 8.287046495 8.056475486 7.371869088 8.10037797 8.498942676 8.07809879 8.443845107 188591773 cspA Stress Cold shock Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 8.163713706 8.32703878 7.641521228 7.458649611 7.484408664 7.965997008 7.833575298 7.866897013 7.73196295 7.837358829 256649881 pstB Stress Phosphate limitation Acetobacter pasteurianus IFO 3283-32 8.523300625 8.35705658 8.162705659 8.073305841 8.858757677 8.124950308 8.700693081 8.449035904 8.553312123 148974919 MFS_antibiotic Antibiotic resistance transporter Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 7.318961359 7.136979409 7.121834094 218174855 amyA Carbon cycling Carbon degradation Starch Cyanothece sp. PCC 7424 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.437257279 7.341571211 7.501212091 7.243015367 7.664757426 7.410940024 7.451169553 197710784 nmoA Organic Remediation Aromatics Nitoaromatics Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 8.365569625 8.528744296 7.386422312 8.17903742 8.094763739 8.647242265 7.980307962 8.683142681 8.230544724 8.237477133 8.139068242 196187323 glucoamylase Carbon cycling Carbon degradation Starch Brevundimonas sp. BAL3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas; 7.989907229 8.182109079 8.28402591 8.008676784 8.213375343 8.356325882 8.128326297 8.399194717 7.839667749 71383812 nasA Nitrogen Assimilatory N reduction uncultured bacterium superkingdom:Bacteria; 8.275812916 8.639167239 7.674350411 7.744643311 7.822117684 7.588774331 7.061153144 7.421509116 7.594981023 7.886553179 7160174 dehH Organic Remediation Chlorinated solvents Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.359346529 8.34904387 8.136007739 8.344388433 8.097180866 7.845161541 8.226415414 8.349156329 8.419717417 8.372249968 8.296260817 239927337 ara Carbon cycling Carbon degradation Hemicellulose Streptomyces ghanaensis ATCC 14672 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 8.638204383 8.535441252 7.890695297 8.300763423 8.160017958 8.630917839 7.843733547 8.462737752 8.059644975 8.265222836 7.952598459 108461025 type_III_secretion virulence secretion Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 8.32662329 8.475865694 8.349334025 8.383862572 8.295116588 8.341101218 9.03902909 8.413723804 8.830744775 8.820715373 8.914817674 145309471 gyrB other category gyrB Alicyclobacillus sp. IAM 14934 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus; 7.13073398 7.311983104 7.441615447 72118807 Catechol Organic Remediation Aromatics Other aromatics Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.074718014 8.272657905 7.671829835 7.66464281 7.871324674 7.39504868 8.091113542 7.680264179 7.86608471 7.637184804 89512454 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.330565656 7.187720353 7.178866933 7.041418695 6.996086968 7.487077289 7.279043411 7.127121412 7.350830471 147920067 nifH Nitrogen Nitrogen fixation uncultured methanogenic archaeon RC-I superkingdom:Archaea;phylum:Euryarchaeota; 7.877218383 8.085192586 8.013197072 8.202834716 7.867133052 8.427209006 7.777389135 7.930817678 7.759804616 103487921 CusF Metal Resistance Copper Sphingopyxis alaskensis RB2256 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 7.63073928 7.80857617 8.364335112 8.569388956 8.025229956 8.636978857 8.041160225 8.106633714 8.429391483 7340224 B_lactamase_A Antibiotic resistance Beta-lactamases Serratia marcescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 7.877539089 7.932768743 7.829525196 7.499457102 8.009225718 8.004795077 7.728517286 7.815845549 7.473525885 10581102 BADH Organic Remediation Aromatics Other aromatics Halobacterium sp. NRC-1 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halobacterium;species:Halobacterium salinarum; 8.096130035 8.183398242 8.190206712 7.727392987 8.301114555 8.085462946 8.104951496 7.753660919 8.189780426 4633554 nosZ Nitrogen Denitrification uncultured bacterium ProA superkingdom:Bacteria; 7.057842988 7.17440013 7.085308134 6.860986705 167624186 hydrogenase Energy process Energy process Shewanella halifaxensis HAW-EB4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella halifaxensis; 6.866257408 7.24418633 6.733206307 7.287964263 7.12775223 6.810372373 7.076370905 223894065 acetylglucosaminidase Carbon cycling Carbon degradation Chitin bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 7.198302993 7.675249448 7.557819825 7.152710377 7.598438822 7.485645393 7.640203616 152981650 fnr Stress Oxygen stress Janthinobacterium sp. Marseille 8.432208938 8.228306813 9.233542398 9.325005379 9.376421334 8.406585439 9.320243234 8.550101876 8.974522845 8.952020036 9.038786516 78093592 narG Nitrogen Denitrification uncultured bacterium 7.955121473 7.996919844 7.947480382 7.193874341 7.636748211 7.917773736 7.645654387 7.817965766 7.41791165 91201166 glnA Stress Nitrogen limitation Candidatus Kuenenia stuttgartiensis 8.445319173 8.267344851 8.12711695 7.659976654 7.448669495 7.84541617 7.679838465 7.881820475 7.602235417 7.636419953 154250853 pstB Stress Phosphate limitation Parvibaculum lavamentivorans DS-1 8.307624873 8.520539743 7.712694751 7.826460559 8.000144179 7.630562247 8.289542769 7.57449328 7.831910285 7.710763864 156064719 tfdA Organic Remediation Aromatics Chlorinated aromatics Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 7.735141241 8.280303233 8.509374724 8.842632535 7.629876695 8.718310588 8.021760395 7.946706342 8.450749288 219954905 TerC Metal Resistance Tellurium Anaeromyxobacter dehalogenans 2CP-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 7.891405598 7.779978436 7.829963591 8.041446487 7.993361722 7.911246937 7.934725923 7.75757872 160900477 sigma_70 Stress Sigma factors Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.530151118 7.355556588 7.530444402 7.721803008 7.555207248 8.007043609 7.153273499 7.271556385 7.54053359 76884178 phoB Stress Phosphate limitation Nitrosococcus oceani ATCC 19707 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 7.469482815 7.490399688 7.39802398 6.970194299 7.271349139 7.719465334 7.370357193 7.339310203 7.558699066 262374390 ureC Nitrogen Ammonification Acinetobacter junii SH205 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter junii; 7.260109324 7.287285182 160888175 ChrA Metal Resistance Chromium Bacteroides uniformis ATCC 8492 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides uniformis; 7.823913064 7.925095579 3378201 TehB Metal Resistance Tellurium Eikenella corrodens superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Eikenella; 8.325649986 8.027410323 8.030025117 8.225386066 8.434545949 8.210465329 8.144621384 8.478791148 8.568136455 8.667126868 8.488831806 188025710 SMR_antibiotics Antibiotic resistance transporter Providencia stuartii ATCC 25827 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia stuartii; 8.091529395 8.326120448 6.934545385 7.434691811 256394911 sigma_24 Stress Sigma factors Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 8.472413854 8.246703548 8.500058559 8.401362321 8.110429076 8.407565397 8.876270506 8.439189238 8.814713384 8.446659162 8.600503015 156857707 APS_AprA Sulphur adenylylsulfate reductase uncultured bacterium 8.117367629 8.214546097 8.186493571 8.166866135 8.168512417 7.764242135 8.275594198 7.984978753 8.133190448 8.1853979 7.573807865 187484352 AceA Carbon cycling Carbon degradation others Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 8.293410096 8.055355192 7.566088789 7.585731353 7.895089494 7.885284315 7.332309602 8.353545903 7.677172341 7.507333438 7.699424594 113970564 narH Stress Oxygen limitation Shewanella sp. MR-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 7.900419387 8.367197553 7.607593384 7.655573436 7.886602634 7.796636284 8.089528311 8.070707494 8.092904778 8.010681644 8.151939776 90335216 gyrB other category gyrB Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 8.339739969 8.197326093 8.055581562 8.04313662 8.588979906 8.386556946 8.46009592 8.226428143 8.16925168 157311077 lysin Bacteria phage LYSIS Lactococcus phage KSY1 order:Caudovirales;family:Podoviridae; 7.159304995 7.273535214 7.388984476 6.707556978 7.472953284 7.139070985 7.169080394 6.912805626 94449436 mcrA Carbon cycling Methane Methane production uncultured archaeon superkingdom:Archaea; 8.52539283 8.169174991 8.137027814 7.757759131 8.728778677 195931897 Catechol Organic Remediation Aromatics Other aromatics Williamsia muralis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Williamsiaceae;genus:Williamsia; 7.963408338 7.996420774 8.288417142 8.224431606 8.061498556 78189597 rubisco Carbon cycling Carbon fixation Chlorobium chlorochromatii CaD3 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium chlorochromatii; 7.331567642 7.551150484 7.285981251 7.604917085 7.366990711 7.561555983 34392408 tdnB Organic Remediation Aromatics Other aromatics Frateuria sp. ANA-18 8.172059168 8.124983027 7.748982501 7.291902543 7.809300229 8.088419188 7.41772406 8.241743043 7.405613292 7.421881884 7.7746306 121556497 pimF Organic Remediation Aromatics Aromatic carboxylic acid Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 8.038161439 8.395040477 8.246862462 7.878051676 8.471118004 8.142359447 8.039102168 8.111469971 8.315329668 116740541 xylA Carbon cycling Carbon degradation Hemicellulose Listeria welshimeri serovar 6b str. SLCC5334 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria welshimeri; 8.109943649 7.818086585 7.776279966 7.572083888 7.742032654 209516130 ChrA Metal Resistance Chromium Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.070495715 8.00812899 7.710829502 7.739534051 8.264524652 7.922580971 8.221974547 7.933825069 7.963984587 109452416 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.272513218 8.337529365 7.580168209 8.07435544 8.352535328 7.186011776 7.730141447 7.829208625 7.885479946 146310316 pilin virulence pilin Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 7.420754996 7.252937322 237758129 SMR_antibiotics Antibiotic resistance transporter Corynebacterium kroppenstedtii DSM 44385 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium kroppenstedtii; 7.705891009 7.864165485 7.814775662 7.661567849 7.940247198 7.982801414 8.24655924 7.878413666 7.922729098 24378604 hrcA Stress Heat shock Streptococcus mutans UA159 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus mutans; 8.164021573 8.2414678 7.670212475 7.228927284 7.480535717 7.14573001 6.923069395 7.263730737 7.462791944 261191955 ABC_antibiotic_transporter Antibiotic resistance transporter Ajellomyces dermatitidis SLH14081 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 8.270733923 8.31590238 8.301599595 7.846619944 218779275 phoB Stress Phosphate limitation Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 8.274323802 8.677032967 7.856173282 7.68509878 8.038547786 7.889302532 8.344649658 8.055526047 8.184824776 8.086327468 8.19124566 224283969 ara Carbon cycling Carbon degradation Hemicellulose Bifidobacterium bifidum NCIMB 41171 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium bifidum; 8.498050192 8.33108131 8.827955486 8.768150385 8.397377929 8.713047534 9.01540185 8.896604286 196171222 nrfA Nitrogen Dissimilatory N reduction Anaeromyxobacter sp. K superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 8.217422685 8.043316736 7.688804411 8.121211087 8.485436618 8.690211967 8.40918098 8.230221581 8.456045532 254547584 RNA_dependent__RNA_polymerase Bacteria phage REPLICATION Enterobacteria phage Qbeta family:Leviviridae;genus:Allolevivirus;species:Enterobacteria phage Qbeta sensu lato; 7.226459519 7.423313657 7.198727693 7.074115126 7.001077295 7.503789305 7.216092647 7.171348271 7.361369604 113934330 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.349695022 8.244116216 7.652250716 7.146763124 8.078985364 8.40439013 7.907303722 7.763086107 7.871829141 7.69668728 189195290 pheA Organic Remediation Aromatics Other aromatics Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7.331941001 6.905341967 7.228713417 6.879281691 7.614022932 7.025743675 6.770998525 6.988298986 222527262 CadA Metal Resistance Cadmium Chloroflexus sp. Y-400-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus; 7.455757771 7.328045031 7.536876284 7.63014669 7.446631382 8.101155611 7.497197205 7.598121201 7.567168697 209956956 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 7.663632881 7.581880004 7.56069977 8.084451335 7.597765097 7.821157867 7.776514241 7.641531799 119512767 chnB Organic Remediation Other Hydrocarbons Nodularia spumigena CCY9414 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nodularia;species:Nodularia spumigena; 7.487679968 7.119078041 7.033310164 7.606161526 148555200 vanA Carbon cycling Carbon degradation Others Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 7.728414005 8.018135798 8.191069216 7.743782111 8.566213125 8.375777641 8.509239776 7.920543559 120405198 proO Organic Remediation Aromatics Other aromatics Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.179388797 8.338890914 7.741875225 7.737936274 7.672249444 7.934272548 7.535023314 8.296532654 7.625305983 7.691465796 7.590564546 241216200 ahpF Stress Oxygen stress Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 8.336272287 7.979384725 7.272396821 7.136137643 7.897274034 7.714492779 7.557610325 7.369519148 7.427142314 187735779 gyrB other category gyrB Akkermansia muciniphila ATCC BAA-835 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Akkermansia;species:Akkermansia muciniphila; 7.871291797 8.075161859 7.567983618 7.584121011 7.623127719 7.450261003 7.793752407 7.955799724 7.835724479 7.876747318 7.590217818 3805970 napA Nitrogen Dissimilatory N reduction Rhodopseudomonas sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas; 7.921785863 8.506530726 8.1285813 8.203373485 7.782099876 8.006168897 8.375238571 8.255241102 8.457030951 8.337075949 8.386607484 187426458 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Akkermansia muciniphila ATCC BAA-835 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Akkermansia;species:Akkermansia muciniphila; 7.281045957 6.769600077 7.241007319 7.165164853 7.598783054 6.991306352 6.932772721 224604147 obgE Stress Radiation stress Lutiella nitroferrum 2002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Lutiella;species:Lutiella nitroferrum; 7.550243634 7.58081668 7.907040631 8.301778806 7.672906792 7.843371022 7.492029475 7.175681423 7.45149618 66968466 katE Stress Oxygen stress Listeria seeligeri superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria; 7.609919797 7.366640532 7.446821638 7.127498835 7.142337702 7.601262565 7.426663386 7.424745609 7.257469946 162707951 Catechol Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 7.738263629 7.924241779 7.858661954 7.104618691 7.309343785 7.39601931 8.176600035 88857166 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Pseudoalteromonas tunicata D2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas tunicata; 8.314566197 8.407353685 8.424745265 8.193008019 7.922778868 7.609298416 8.191203071 8.151040398 8.196339993 7.845689158 8.13737276 169795999 iro virulence Acinetobacter baumannii AYE superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 7.297476268 7.210723139 7.319682285 7.39681471 7.656824602 7.623443909 7.7797946 7.835133 77959567 pulA Carbon cycling Carbon degradation Starch Yersinia bercovieri ATCC 43970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 7.421115161 7.80373012 7.47562169 7.582870369 7.955189419 126035103 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.771542915 7.586983724 7.572391762 7.698548066 7.294533932 7.645506265 7.765155223 8.239798521 15922749 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sulfolobus tokodaii str. 7 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus;species:Sulfolobus tokodaii; 8.030453881 8.137759417 7.62257012 7.244434034 7.27438197 7.236625316 7.597803898 144905833 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.477933397 7.765314269 7.586378003 7.325997362 7.409895474 7.456396625 7.514516115 7.629312889 212994236 cellobiase Carbon cycling Carbon degradation Cellulose Thermotogales bacterium TBF 19.5.1 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Kosmotoga;species:Kosmotoga olearia; 7.224214539 6.981503314 68547347 amyA Carbon cycling Carbon degradation Starch Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 6.903714867 7.018316068 7.559758844 7.402749728 7.107528665 39649726 nhh Organic Remediation Aromatics Nitoaromatics Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.784736111 7.68315178 7.451739532 7.510224885 158333403 pstA Stress Phosphate limitation Acaryochloris marina MBIC11017 8.091519068 8.147680478 7.525613489 7.46499241 7.496318588 7.513160769 7.099143654 8.039018357 7.428292994 7.545956032 7.363182092 68536566 ppx Phosphorus Phosphorus utilization Corynebacterium jeikeium K411 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 8.2463984 8.197497723 7.690340732 7.420750394 7.689152792 7.234260285 7.633709716 84711534 nifH Nitrogen Nitrogen fixation Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 7.224404297 7.735409728 7.726389248 7.886734086 7.043122331 8.225687238 7.494557009 7.41833573 7.669710632 260814998 B_lactamase_C Antibiotic resistance Beta-lactamases Branchiostoma floridae superkingdom:Eukaryota;kingdom:Metazoa;phylum:Chordata;family:Branchiostomidae;genus:Branchiostoma; 8.175107791 8.233436444 7.696724199 7.433480827 7.633620992 7.259235572 7.163164012 7.762108771 7.207442292 7.49800449 7.529616318 14495292 hdnO Organic Remediation Aromatics Heterocyclic aromatics Arthrobacter nicotinovorans superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.619733025 7.602600658 7.313403852 7.648916452 7.357787963 7.333875481 261415107 sigma_32 Stress Sigma factors Fibrobacter succinogenes subsp. succinogenes S85 superkingdom:Bacteria;phylum:Fibrobacteres;class:Fibrobacteres;order:Fibrobacterales;family:Fibrobacteraceae;genus:Fibrobacter;species:Fibrobacter succinogenes; 7.769706478 7.528748071 7.42218044 7.370511214 7.311121083 7.186231984 7.455710489 194332862 sox Sulphur Sulphur oxidation Prosthecochloris aestuarii DSM 271 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Prosthecochloris;species:Prosthecochloris aestuarii; 7.478423061 7.801347387 7.413115644 7.89358437 7.742948691 7.782525067 7.775319724 7.77653291 7.886829251 99082387 fnr Stress Oxygen stress Silicibacter sp. TM1040 8.459226804 8.758569815 8.291958461 8.218420249 8.206660053 8.119322712 8.159447318 8.190146219 8.113529674 8.071618943 8.354377128 52005051 CopA Metal Resistance Copper Bacillus licheniformis ATCC 14580 7.798316399 8.011082575 7.748378786 8.107440864 8.27394916 8.282852553 8.271958818 7.945753172 8.080984139 85668384 SMR_antibiotics Antibiotic resistance transporter Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.632223927 8.223361019 8.32091136 8.112035674 8.163095216 8.220891481 8.449716955 8.347836687 8.393580511 8.456831158 8.217995388 227949082 glnA Stress Nitrogen limitation Meiothermus ruber DSM 1279 7.224357197 7.552242774 227967115 phoA Stress Phosphate limitation Tsukamurella paurometabola DSM 20162 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 8.252315705 8.651612636 7.361890918 6.97380612 7.634744446 7.965238219 7.300723768 8.077387583 7.56589929 7.72791422 7.59798176 44662914 TerZ Metal Resistance Tellurium symbiont bacterium of Paederus fuscipes 7.266053732 7.450476203 7.84084122 7.775097125 6.767784452 8.026544848 7.429198778 7.438445232 7.77373666 88936116 ChrA Metal Resistance Chromium Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 7.488364869 7.616542287 7.670494383 7.124900226 7.402356949 7.928508783 7.577132141 7.657299596 7.45836617 18034223 APS_AprA Sulphur adenylylsulfate reductase Desulfofrigus oceanense superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfofrigus; 7.939230918 8.188141326 7.800558381 7.847100745 8.308914849 7.955685624 7.812950427 8.388236372 8.125862453 8.229969528 7.896421442 240009203 fnr Stress Oxygen stress Methylobacterium extorquens AM1 7.160794159 7.549101449 7.55708523 7.572100212 6.932267595 8.080948439 7.358152534 7.371487468 7.400878018 119539442 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 7.93001167 8.031527738 7.746120511 7.458343904 8.152556091 8.027548629 7.826244673 7.905077934 7.959492615 144905951 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.661102428 7.734749868 7.679633322 7.352857115 7.951447157 7.766499533 7.893372407 7.945867443 7.689163102 268313993 fnr Stress Oxygen stress Thermomonospora curvata DSM 43183 8.191154728 7.65411325 8.029284531 8.170209823 7.906831483 8.007910625 8.201128335 8.099339057 163852786 AmiE Organic Remediation Aromatics Other aromatics Methylobacterium extorquens PA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 8.112376689 8.155231979 7.604772987 7.992059223 7.967080462 8.11196085 7.967556937 7.578412425 7.560612337 7.545423069 11344614 norB Nitrogen Denitrification Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.022368192 7.733439778 7.393293913 7.528612876 8.030084668 8.271296921 7.802273514 7.588124503 7.764393342 99030463 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 7.825877278 7.92770507 7.817030335 7.144989453 7.85358914 7.648199839 7.590542267 7.924075183 7.750796063 190572845 Arylest Organic Remediation Aromatics Other aromatics Stenotrophomonas maltophilia K279a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 8.1060229 8.619980678 8.579645868 8.134468586 8.148313524 8.311315051 8.413569042 7.93204015 34104018 fnr Stress Oxygen stress Chromobacterium violaceum ATCC 12472 8.168220532 8.221226543 8.496717092 8.435701975 8.699788064 8.582546332 8.543902303 8.514456979 8.70347009 68234365 pulA Carbon cycling Carbon degradation Starch Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.484459282 8.242293465 8.127657178 8.621715228 8.826728647 8.503200244 8.741453136 8.558600382 8.507444584 8.888921073 8.527151305 109632561 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.076945115 8.372188128 7.79095289 7.503536173 7.486575081 7.12694048 7.387471873 7.496350991 7.571746003 7.665484675 103488047 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Sphingopyxis alaskensis RB2256 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 7.412801127 7.985599993 7.759648877 7.536603371 7.747718317 7.294611836 7.81116789 7.702957061 119406456 BpH Organic Remediation Aromatics Aromatic carboxylic acid Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 7.509628716 6.996494699 7.795493478 7.999047069 7.439958272 8.150845463 7.341868382 7.270248612 7.631170628 160917540 narG Nitrogen Denitrification uncultured bacterium 7.748710863 7.309804115 7.44251374 7.373592936 7.468805771 7.235050643 7.513060716 170694218 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 8.098054376 8.529877126 8.010318564 8.235913584 7.908952085 8.065360458 8.506422325 8.594791516 8.627629638 8.407980111 8.305250311 91974962 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.100076391 8.309119884 8.045949642 7.998002925 8.067675194 7.832225465 8.381979641 8.166300714 8.391094014 8.069577298 8.298125883 69936934 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Paracoccus denitrificans PD1222 7.582997443 7.690628287 8.026185117 8.106395514 7.456914776 8.176505156 7.455191324 7.251655367 113726940 xylA Carbon cycling Carbon degradation Hemicellulose Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 7.46802631 7.792000542 7.965424502 7.998528392 7.98921727 8.136368931 8.165479223 8.493686645 118037116 silC Metal Resistance Silver Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8.413985496 8.218645557 8.009219419 8.456342339 8.315013244 8.078662268 8.149186047 8.149591114 8.199099056 222422497 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Staphylococcus carnosus subsp. carnosus TM300 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus carnosus; 8.018326822 8.148005781 8.226483428 7.798042409 8.676144334 8.34607774 7.882863513 7.652513814 85859696 atzA Organic Remediation Herbicides related compound Syntrophus aciditrophicus SB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Syntrophus;species:Syntrophus aciditrophicus; 7.90805912 7.731332759 7.370457289 7.763566958 7.84895684 7.942105987 7.706934567 7.947166846 7.818642993 71023777 glnA Stress Nitrogen limitation Ustilago maydis 521 7.740545138 7.657825667 7.367415547 7.56388732 7.426937838 8.00388156 7.321249268 7.21591975 7.471468574 186471058 mer Metal Resistance Mercury Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.20369883 8.23647763 7.698135529 7.534617321 7.628403764 7.817739468 7.450600852 8.446617711 7.276846514 7.200073004 7.76483727 94471345 narG Nitrogen Denitrification uncultured bacterium 7.805611636 7.921129944 7.849084187 7.581318108 7.606383794 7.598274074 7.444292061 7.806711254 168198436 fnr Stress Oxygen stress Methylobacterium sp. 4-46 8.784285568 8.226719764 8.904538867 9.062824451 8.823406673 8.89615534 9.19854552 8.779503642 8.954360158 8.718006541 8.991134005 256779961 amyA Carbon cycling Carbon degradation Starch Streptomyces hygroscopicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces hygroscopicus; 7.639588544 7.664031653 7.543274176 7.119757399 7.32389176 7.417581106 7.480507805 261286167 SMR_antibiotics Antibiotic resistance transporter Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.208067659 7.090649428 7.119782301 6.962401038 7.127319368 7.522480282 6.921656431 7.00011265 87136146 chnB Organic Remediation Other Hydrocarbons Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 7.19674799 7.561604009 7.389874118 7.068847007 7.597252081 7.150520067 6.981065462 7.498866205 119353877 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Chlorobium phaeobacteroides DSM 266 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 7.308330139 7.258039805 7.125451921 6.803806763 6.887582415 7.434189233 6.897334466 6.775301147 7.349298493 150036068 sox Sulphur Sulphur oxidation Thiocapsa pendens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa; 7.995195889 8.586969817 8.111963954 8.443407495 8.209642756 169241478 ureC Nitrogen Ammonification Mycobacterium abscessus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.32657427 8.489366735 8.47354747 8.516831903 8.425364531 7.953713974 8.603103618 8.30493133 8.425401501 8.395532176 8.57710067 193214632 pstA Stress Phosphate limitation Chloroherpeton thalassium ATCC 35110 8.00857092 8.301104028 7.214893429 7.281210769 7.621027775 7.901535317 6.963799265 7.911881516 7.315036772 7.17630256 7.22092354 56378382 gyrB other category gyrB Geobacillus kaustophilus HTA426 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus kaustophilus; 7.102808378 7.421489227 7.642366759 2338745 ZntA Metal Resistance Zinc Rhodobacter capsulatus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 8.494503684 8.15068572 8.135338753 8.282975076 8.285186117 8.240007492 8.585658938 8.320678258 8.079061246 194288995 nagG Organic Remediation Aromatics Aromatic carboxylic acid Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 8.041658753 8.160466635 7.387671268 7.568794476 7.738765852 7.820588976 7.423750006 8.301707138 150377998 glucoamylase Carbon cycling Carbon degradation Starch Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 7.409726629 7.533270659 7.454728785 7.300386022 7.767461565 7.360435731 7.096575857 7.45524454 189193871 endoglucanase Carbon cycling Carbon degradation Cellulose Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 8.788348379 9.06922707 8.80793986 8.702194921 8.632321163 8.768391277 8.997659814 8.701609601 9.050269539 9.0753427 9.076989459 219680423 mauAB Organic Remediation Herbicides related compound gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.06073371 7.84386324 7.581560295 7.560018913 8.056326266 8.15780258 7.899047854 7.869458776 7.999328275 160357160 cap virulence capsule Bacillus selenitireducens MLS10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus selenitireducens; 8.405793667 8.487464935 8.096885551 8.163483868 8.004282117 7.994408943 8.011505229 7.987635198 8.145225777 8.035589286 7.9879699 84385741 nasA Nitrogen Assimilatory N reduction Vibrio splendidus 12B01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 8.304762953 8.360533424 7.898900679 7.831964167 7.687278719 7.735800651 7.647565684 8.089275898 7.688047607 7.64263266 7.609416753 74053796 todC Organic Remediation Aromatics BTEX and related aromatics uncultured bacterium 10.09209381 10.21514826 9.596011099 9.238753662 9.255079064 87281243 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.721174739 7.947211864 7.774546936 7.063834779 7.449330038 7.564571986 8.060413037 256389685 pstA Stress Phosphate limitation Catenulispora acidiphila DSM 44928 8.229461054 8.961469899 8.144395501 7.975908237 8.01376449 8.122715486 7.893971643 8.018171668 7.859108875 8.101151267 222107055 pcaG Organic Remediation Aromatics Other aromatics Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 7.128706365 7.267023875 7.485288336 6.996303814 7.524503628 7.06368366 7.221662903 219053412 nirK Nitrogen Denitrification uncultured denitrifying bacterium superkingdom:Bacteria; 8.080109231 8.164876423 34017156 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.530063681 7.551573581 7.473083034 7.365627044 7.429043072 7.549467063 7.877393428 7.864303628 7.474637485 156857749 APS_AprA Sulphur adenylylsulfate reductase uncultured bacterium superkingdom:Bacteria; 7.71313938 7.709187155 7.457239244 6.910942496 7.57454046 7.838937172 7.645574658 7.368108823 7.633298896 240102685 pstB Stress Phosphate limitation Thermococcus gammatolerans EJ3 8.444905254 8.740443182 7.528853129 7.381256235 7.402667728 7.070783231 7.267359005 7.351941071 7.484896747 7.61909065 8.193936266 212692835 tutFDG Organic Remediation Aromatics BTEX and related aromatics Bacteroides dorei DSM 17855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides dorei; 7.794120118 7.743888177 7.692508284 7.595306978 7.974337 7.68436077 7.506542019 7.768322531 166714131 4HBH Organic Remediation Aromatics BTEX and related aromatics Xanthomonas oryzae pv. oryzicola BLS256 7.379418542 7.791052385 7.490687357 7.674573725 7.688492408 7.85180996 7.642842063 7.937726904 7.99541603 146396855 ChrA Metal Resistance Chromium Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 8.133155389 8.122904986 7.617853297 7.438491247 7.435683228 7.749515578 7.453442627 8.13145431 7.533776776 7.389325779 7.435109487 149378178 sigma_38 Stress Sigma factors Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 8.535807179 8.385931016 7.667120353 7.623436652 7.668415338 7.79960388 7.739937771 8.228426665 7.561676659 7.805947218 7.789395239 83724059 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia solanacearum UW551 7.569374493 7.639392813 7.805180404 7.512647984 7.51644043 7.907781698 7.412293332 7.73930456 7.09774878 77389342 gyrB other category gyrB Rhodobacter sphaeroides 2.4.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 8.281696026 8.504093097 8.068884855 8.334488019 7.884728744 8.082659528 8.312685745 8.546551429 8.548894215 8.796937059 8.62854416 224283124 hrcA Stress Heat shock Bifidobacterium bifidum NCIMB 41171 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium bifidum; 7.664975729 7.838202725 7.678522972 7.508248861 7.568648007 7.758003401 7.525880894 7.4984915 7.580762384 76803694 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 7.6089764 7.666126942 6.981640714 7.227210265 7.72546189 7.415487047 7.645544819 49651671 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Yarrowia lipolytica CLIB122 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Dipodascaceae;genus:Yarrowia;species:Yarrowia lipolytica; 7.220227852 7.214938871 7.706011233 7.912337973 7.553812819 7.826252427 7.681810096 7.582098859 45169801 pectinase Carbon cycling Carbon degradation Pectin Penicillium expansum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 7.858322574 8.26962912 8.448936123 8.599792922 8.304367862 8.331955059 8.114282224 8.133325634 8.292967097 256545437 cspA Stress Cold shock Anaerococcus vaginalis ATCC 51170 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Anaerococcus;species:Anaerococcus vaginalis; 8.351435017 8.209217357 7.618032901 7.534832148 7.675688337 7.294545388 7.264449087 7.752570381 7.561038322 7.462205543 226303924 CDH Carbon cycling Carbon degradation Cellulose Rhodococcus erythropolis PR4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 8.09846528 8.232570559 7.517317489 7.804314299 7.341482338 7.452618079 7.825811973 225175261 ctsR Stress Protein stress Dethiobacter alkaliphilus AHT 1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Syntrophomonadaceae;genus:Dethiobacter;species:Dethiobacter alkaliphilus; 7.954090608 7.777986451 7.795921353 7.618737308 7.799978479 8.005723357 7.539582769 7.586898184 7.569132637 206686490 rd Organic Remediation Chlorinated solvents Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 9.494840753 9.612722518 8.394682052 8.37804229 8.491560426 8.397362933 8.428090945 17863089 endochitinase Carbon cycling Carbon degradation Chitin Vibrio sp. 5SM-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.983714958 7.720088638 7.512481412 7.619003396 7.840795914 7.814202969 7.610181526 7.538167503 7.367684986 20501965 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.464410031 7.419618311 7.537622464 7.458682314 7.59450986 7.218505607 7.102600753 26278790 narG Nitrogen Denitrification uncultured bacterium 8.325805468 8.389611587 8.435321771 8.15326881 7.715038364 8.101053723 8.182730496 8.201068088 8.134553133 7.763391149 187714659 akbF Organic Remediation Aromatics BTEX and related aromatics Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.86389216 7.780007125 7.752828883 7.901765963 7.724720794 7.905794813 7.836543736 8.032121739 7.78350101 255021255 MFS_antibiotic Antibiotic resistance transporter Acidithiobacillus caldus ATCC 51756 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 7.900496442 7.853185728 7.804401391 7.925609898 7.942216271 8.114993134 8.06693455 8.07248026 7.836412097 75992416 phtA Organic Remediation Aromatics Aromatic carboxylic acid Terrabacter sp. DBF63 8.103086456 8.137457985 7.674595025 7.825046517 7.900803808 7.37416018 7.680077041 7.971823297 7.968671042 7.679758211 7.694738974 227078500 sigma_24 Stress Sigma factors Corynebacterium lipophiloflavum DSM 44291 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium lipophiloflavum; 8.10483814 8.113475197 7.790907423 7.753966511 7.260223118 7.495779726 7.440214105 7.912680659 7.567659103 7.720438832 7.505467514 225182023 glnA Stress Nitrogen limitation Dethiobacter alkaliphilus AHT 1 8.099399442 8.299074605 7.555668844 7.421556521 7.327422909 7.282981008 7.758795304 7.438674177 7.430349611 7.483204649 257487732 SMR_antibiotics Antibiotic resistance transporter Pseudomonas syringae pv. tabaci ATCC 11528 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas amygdali; 8.103454432 8.22386996 7.226808771 7.015010324 7.171338096 7.867271588 7.228436826 7.116703824 77378419 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.952368671 7.630485711 7.70306078 7.591180075 7.772817392 7.630287392 7.629014011 7.621881066 7.565856921 224542193 ppk Phosphorus Phosphorus utilization Catenibacterium mitsuokai DSM 15897 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichi;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Catenibacterium;species:Catenibacterium mitsuokai; 7.917782763 8.096131007 7.296647805 7.131521479 7.196699269 88919491 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 8.5857665 8.415377449 8.571027188 8.149761502 8.903776964 8.374648034 8.668585627 8.496649008 8.521014153 167817153 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia pseudomallei 91 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 7.063416967 7.233647577 7.432193319 7.479718515 6.971065489 7.684114456 7.243717548 7.144174823 7.458252435 56178497 pilin virulence pilin Idiomarina loihiensis L2TR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina loihiensis; 7.251303645 7.542821132 7.246374474 7.066550555 7.616102485 6.95089341 7.288291863 150375801 ChrA Metal Resistance Chromium Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 7.402357864 7.506325571 7.919121456 8.033664724 8.062221091 8.086476036 8.335952322 8.164374633 8.443847355 256375630 sigma_70 Stress Sigma factors Actinosynnema mirum DSM 43827 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinosynnemataceae;genus:Actinosynnema;species:Actinosynnema mirum; 7.910075328 8.151802229 7.759410879 7.639780829 7.82894176 7.794999535 7.436631076 8.124121778 7.835521887 7.747866241 7.779563079 29125968 nosZ Nitrogen Denitrification uncultured soil bacterium superkingdom:Bacteria; 7.45731899 7.785858355 7.730092679 7.833929461 7.882570945 8.136994008 8.176189305 7.993294914 7.960686985 77163958 Arylest Organic Remediation Aromatics Other aromatics Nitrosococcus oceani ATCC 19707 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 7.519795868 7.516073908 7.368996515 7.110478721 7.003037612 7.792188198 7.128464325 7.049382644 7.421866298 114799621 ppx Phosphorus Phosphorus utilization Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 7.271835237 7.733752777 7.701296312 7.358198334 157913655 gyrB other category gyrB Dinoroseobacter shibae DFL 12 8.247708534 8.177584978 7.713123756 8.048749498 8.356809957 7.877755606 8.335724272 8.23729555 8.020147859 8.127855427 7.8995772 239521642 sigma_70 Stress Sigma factors Clostridiales bacterium 1_7_47_FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales; 8.559369505 8.688949195 8.164972667 8.293382786 8.421674799 7.944165443 8.627199373 8.078201351 8.203712355 8.448533121 7.871979048 218750782 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.680212665 7.552101422 7.432000249 7.327238891 7.535001771 7.59059038 7.467108127 7.384421804 116049727 nasA Nitrogen Assimilatory N reduction Pseudomonas aeruginosa UCBPP-PA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.431676755 8.561276487 8.489227554 8.172892096 7.977831074 7.641713529 7.880825344 7.93709062 7.996517524 8.231667976 112463233 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.681648954 8.702823959 8.282395718 8.058495969 8.040469963 7.892916961 7.702793769 8.085417982 7.989848941 7.913851018 8.302153894 94500900 Arylest Organic Remediation Aromatics Other aromatics Oceanobacter sp. RED65 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Bermanella; 8.027966404 8.142414304 7.150881954 7.740769569 7.633137335 7.509613365 7.788922825 7.802093296 7.536400759 209542784 ZitB Metal Resistance Zinc Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 8.292623805 8.638034753 7.491182144 7.760047215 7.925110532 7.908461136 8.385002181 7.519135079 7.605801454 7.83668557 2622622 atzA Organic Remediation Herbicides related compound Methanothermobacter thermautotrophicus str. Delta H superkingdom:Archaea;phylum:Euryarchaeota;class:Methanobacteria;order:Methanobacteriales;family:Methanobacteriaceae;genus:Methanothermobacter;species:Methanothermobacter thermautotrophicus; 7.863963563 7.854060537 7.728313813 7.459504431 8.046166971 8.044846407 7.916257314 7.749214944 7.968513086 76577410 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.950501532 7.972588355 7.706697248 7.787062038 7.775683654 8.018400817 7.602972631 7.529660908 7.894573214 163760167 AceA Carbon cycling Carbon degradation others Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 7.290668026 7.305794768 7.716082046 8.011618703 7.631755977 8.155219615 7.243445018 7.254967068 8.037716013 82944103 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 7.569327758 7.460295343 7.724791418 7.284260811 8.087472152 7.199197265 7.6098815 7.921955394 158448774 phoB Stress Phosphate limitation Coprococcus eutactus ATCC 27759 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Coprococcus;species:Coprococcus eutactus; 7.319631437 7.363557452 7.792491269 7.14784901 7.402757386 148565483 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 8.161064291 8.301011858 7.577874495 7.925245051 7.726343644 7.573906364 8.058059284 7.868658891 7.726058375 113934332 silC Metal Resistance Silver Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.498917596 8.666530237 8.157984036 8.522351727 8.078585365 8.107386444 8.185229882 8.045462222 8.018093388 8.240828837 39985436 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 7.813577063 7.631016782 7.718085046 7.637887283 7.833830992 8.0748948 8.1886609 7.865458083 160895336 hrcA Stress Heat shock Clostridium sp. L2-50 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 6.783397755 7.322086034 240172194 B_lactamase_C Antibiotic resistance Beta-lactamases Mycobacterium kansasii ATCC 12478 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 7.968414732 7.982205753 7.914903341 8.067266905 8.329252816 8.541016492 8.025741824 8.088692526 8.127257044 8.249516963 7.926802262 148871096 SMR_antibiotics Antibiotic resistance transporter Vibrio harveyi HY01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 8.096892706 8.128396354 8.245978649 8.039886266 7.880506822 8.103774611 8.240958732 8.266510628 8.132077318 8.003534471 7.661820592 194684975 ureC Nitrogen Ammonification Proteus mirabilis HI4320 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 7.854722357 7.953090929 8.141283415 7.408070095 7.879516421 8.011936871 7.834107468 8.07674119 7.745690683 53716166 nmoA Organic Remediation Aromatics Nitoaromatics Burkholderia mallei ATCC 23344 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia mallei; 7.938258925 8.242478079 7.721363528 7.518108181 7.290834374 7.36857639 7.255634084 7.684963886 7.420910179 6.958964277 7.39428049 227551035 fnr Stress Oxygen stress Enterococcus faecium TX1330 7.939592152 8.067702666 118747583 pmdAB Organic Remediation Aromatics Others Marinomonas sp. MWYL1 7.337355474 7.259906431 7.947255555 7.956103561 7.373567784 8.300626775 7.207027179 7.168874747 7.867624772 259033591 grpE Stress Heat shock Mesorhizobium opportunistum WSM2075 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 7.275128699 7.698820056 8.144552601 7.766270649 7.86575487 7.319118834 7.515693158 4996836 gyrB other category gyrB bacterium rA11 superkingdom:Bacteria; 8.280549026 8.036440363 7.953390648 7.732001785 7.940471269 8.291564038 8.177973885 7.986950733 7.846742967 221158954 SMR_antibiotics Antibiotic resistance transporter Rhodobacter sphaeroides KD131 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 8.634044686 8.826983803 8.378203264 7.983156255 8.761348729 8.080540962 8.438739397 8.356070658 8.830442794 82618379 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.630700533 8.064618637 8.188026064 8.463030362 8.131623707 7.954307461 7.909758046 8.316791621 158339430 arcB Stress Oxygen limitation Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;genus:Acaryochloris;species:Acaryochloris marina; 6.76488444 7.44006931 7.285227574 6.973312177 7.862675646 7.169938899 7.046568448 7.032971781 196479441 pcc Carbon cycling Carbon fixation Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 7.447048516 7.463118219 8.047794441 8.035961502 7.583976392 8.119391188 7.572166238 7.475474158 7.663129823 117991077 ureC Nitrogen Ammonification Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.814133811 7.776472431 7.390730395 7.881011324 7.710675521 8.00695058 7.608665029 7.761395774 229825188 sigma_70 Stress Sigma factors Abiotrophia defectiva ATCC 49176 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Aerococcaceae;genus:Abiotrophia;species:Abiotrophia defectiva; 7.422386957 7.48811216 7.191437057 7.189883087 7.652988288 7.203044512 6.959365897 88791334 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 7.820908185 8.139891114 7.142700222 6.875215196 7.076567372 6.972957144 241361977 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax delafieldii; 8.377360745 8.5911301 8.557834931 8.537526372 8.656221602 8.763716799 8.384023381 8.472504689 8.723772785 113897923 amyA Carbon cycling Carbon degradation Starch Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 7.721631836 7.574527059 7.412907514 8.505456052 7.993285441 7.76077368 7.768886942 7.58788872 110633800 sigma_24 Stress Sigma factors Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 8.289172187 8.139453991 7.590952029 7.821567205 8.082505084 8.210580786 8.085925088 7.925862105 156720384 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.875219076 8.194507263 8.195474526 8.068562023 8.280052973 8.20448503 8.651771394 8.343381501 8.30721923 229543825 sigma_70 Stress Sigma factors Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 8.359299048 8.415350284 7.617530246 7.403156735 7.2821822 7.295396478 7.084304158 7.644895971 27365397 CadA Metal Resistance Cadmium Vibrio vulnificus CMCP6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 7.117393358 7.053080972 115524861 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.092899804 7.778574654 8.103394948 8.474271082 8.275898258 8.17044566 8.000222487 8.424832149 170516856 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 7.456551344 7.440103098 7.255668504 7.541898225 186473274 HBH Organic Remediation Aromatics BTEX and related aromatics Burkholderia phymatum STM815 7.978220893 8.267927177 8.086764763 7.558574361 7.554988563 7.594466615 7.795218331 7.939052321 7.917000182 7.664717597 7.847904979 228558172 amyA Carbon cycling Carbon degradation Starch Citrobacter youngae ATCC 29220 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter youngae; 7.919383163 7.954363097 7.809457191 7.790527042 8.202831377 7.991264315 7.979980925 8.048842955 8.195620149 118739041 atzC Organic Remediation Herbicides related compound Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 8.248196803 7.897950112 7.653129828 7.797669726 7.994951601 7.964524794 7.839781318 7.678701094 7.332474027 66391493 clamp_loader_T4_ATPase Bacteria phage REPLICATION Enterobacteria phage RB43 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 8.023415635 8.219391143 7.766905357 7.904616283 7.078113146 7.643017463 7.938481503 7.315316778 7.951957651 8.054192507 7.761350621 251847326 narI Stress Oxygen limitation Paenibacillus sp. oral taxon 786 str. D14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 7.443029627 7.824038953 7.202681303 7.577134018 7.225787738 7.966484971 258552924 katE Stress Oxygen stress Zymomonas mobilis subsp. mobilis NCIMB 11163 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Zymomonas;species:Zymomonas mobilis; 7.849696352 7.656470681 7.624181323 7.979996398 7.997635593 7.90637813 7.61588147 7.712378832 113529880 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 7.268440498 7.714255612 7.625088011 7.277021377 7.542501117 7.708600943 7.569630981 7.57325701 6289094 cydA Stress Oxygen limitation Mycobacterium smegmatis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.357303138 8.537585496 8.566036786 8.58022963 8.531791974 8.485341195 9.018603813 8.680098907 8.948137055 8.844616876 8.821517829 75700055 nmoA Organic Remediation Aromatics Nitoaromatics Anabaena variabilis ATCC 29413 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena variabilis; 7.419207309 7.446028481 7.795994122 7.627006338 7.356263028 8.167408436 7.200531675 7.05313225 116610287 sigma_70 Stress Sigma factors Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8.777902598 8.530178473 8.209289074 8.279724622 8.115976394 8.541924347 7.820460227 8.610779954 8.119158213 8.283829772 8.06827731 62149146 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.308829078 7.224654663 7.18887549 7.089752023 7.321464774 7.438696509 7.161405156 7.015947152 257219042 DNA_polymerase_type_I Bacteria phage REPLICATION Deftia phage phiW-14 order:Caudovirales;family:Myoviridae; 7.798659441 7.903061937 7.450605937 6.96833456 8.053012904 7.752717081 8.032122271 7.798213188 7.723754438 209516701 CDD Organic Remediation Aromatics Other aromatics Burkholderia sp. H160 8.261218185 8.302020023 7.796303578 7.386261938 7.610569132 7.541518156 7.379056974 7.640059759 7.357256065 7.238329764 7.613240763 123443563 ArsC Metal Resistance Arsenic Yersinia enterocolitica subsp. enterocolitica 8081 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 7.565224135 8.106654128 8.143430413 7.920532177 8.093694533 8.192558684 8.104487149 8.277639458 7.706311725 83026036 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 8.403737196 8.620066129 8.588118373 8.430782371 8.475188739 8.65670998 8.733482294 8.686705558 8.693645097 8.469785387 8.515644107 241906038 pstA Stress Phosphate limitation Methanocaldococcus infernus ME 8.667139651 8.661637132 8.463140396 8.360329849 8.210434886 7.674416405 7.578875804 219853191 B_lactamase_C Antibiotic resistance Beta-lactamases Candidatus Methanosphaerula palustris E1-9c superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;genus:Methanosphaerula;species:Methanosphaerula palustris; 7.423572519 7.613738161 6.867251392 7.934047786 8.11447829 7.760930845 7.888372152 238750455 ureC Nitrogen Ammonification Yersinia rohdei ATCC 43380 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia rohdei; 8.180543698 8.29924899 7.85372009 7.867369593 7.681726929 7.673144439 7.891678958 8.234917057 8.077143259 7.908233171 7.940790136 7208812 endoglucanase Carbon cycling Carbon degradation Cellulose Clostridium thermocellum superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 8.043326294 7.761329274 7.512746886 7.419709102 7.965385048 7.722759129 7.68128661 7.778537654 70607907 related_thiosulfate_gene Bioleaching Sulphur Sulfolobus acidocaldarius DSM 639 7.240592379 6.947342607 7.001963371 7.145140866 7.138917094 150839955 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Actinobacillus succinogenes 130Z superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus succinogenes; 8.025119042 8.328683651 85669059 nreB Metal Resistance Nickel Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.158762556 8.235367699 8.368138243 8.296750167 8.216701998 8.375795583 8.053480863 8.460405857 7.832471461 222102382 CopA Metal Resistance Copper Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 7.708980821 8.397257264 8.02537604 7.536652421 7.923147109 7.871637185 7.722107588 7.834606868 7.819943915 1321898 gyrB other category gyrB Mycobacterium smegmatis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.284291984 7.517350791 256591316 amyA Carbon cycling Carbon degradation Starch Cyanothece sp. PCC 8802 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.295127254 7.260312997 7.171421086 84498490 ArsC Metal Resistance Arsenic Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 7.309616997 7.316947734 7.392777047 7.526766695 7.283496428 8.371708384 7.198814351 7.34364401 229321762 SMR_antibiotics Antibiotic resistance transporter Rhodococcus erythropolis SK121 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 8.106739586 8.115893384 7.75864982 7.627703115 7.406723765 7.48224349 7.687943442 7.985905168 7.563787103 7.241745573 7.535059886 110818208 TerZ Metal Resistance Tellurium Rhodococcus jostii RHA1 7.78727633 7.546389275 7.337587137 7.145641033 7.346196802 7.586897233 7.506193288 7.299278875 7.467269428 114192027 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 8.327146364 8.513543198 8.633247141 8.314044206 8.206992565 8.274022989 8.786870124 8.547453267 8.527615694 8.330617758 8.770330824 71919878 cmuA Organic Remediation Chlorinated solvents uncultured bacterium superkingdom:Bacteria; 8.275701087 8.224268102 7.914065215 7.998732706 8.271211511 8.38501045 8.260373596 8.543621863 8.582737452 8.305011922 8.477525308 15898844 catechol_B Organic Remediation Aromatics Other aromatics Sulfolobus solfataricus P2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus;species:Sulfolobus solfataricus; 7.995815373 8.26564887 7.566140419 7.34170707 7.300633319 6.936037555 7.279654719 7.635493192 7.310324057 7.289786583 7.511099128 188572645 mcrA Carbon cycling Methane Methane production uncultured archaeon superkingdom:Archaea; 7.860937637 7.799594879 7.830949524 7.643186279 7.483445602 7.774337642 7.511845386 7.732455697 7.474018826 151588147 dehH109 Organic Remediation Chlorinated solvents Methylobacterium extorquens PA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 8.771410503 8.439364685 7.62055431 8.690937133 8.987071597 9.16729456 8.817283077 8.603026205 8.611880718 8.824115261 262308324 Mex Antibiotic resistance transporter Acinetobacter lwoffii SH145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter lwoffii; 7.922030938 8.242673479 7.574827781 7.613348604 7.48826374 7.349164288 7.478501894 7.634962842 7.653111692 7.446774438 7.248762495 111024864 catechol_B Organic Remediation Aromatics Other aromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7.679856181 7.385122798 7.454735989 7.209436398 7.557830311 7.620848665 7.278868433 7.359693511 66852639 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 7.937116215 7.652427835 7.806630523 8.199507552 7.889356803 7.935662276 7.7659187 7.884146584 7.61903697 222106906 vdh Carbon cycling Carbon degradation Others Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 8.294942785 8.398949167 7.951788296 7.870937654 8.041715227 8.14149625 7.9239082 8.330003765 49528324 cellobiase Carbon cycling Carbon degradation Cellulose Candida glabrata CBS 138 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Nakaseomyces;species:Candida glabrata; 8.437432685 8.845601598 8.277017626 8.590248327 8.204648279 8.473671843 8.978636526 9.428252736 8.845202351 8.705146539 8.798064017 13249575 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.861590495 8.242467216 7.403555457 7.447340747 7.235243365 7.362486868 7.168531908 182678542 ppx Phosphorus Phosphorus utilization Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 7.30850367 6.950030747 7.180030441 7.03986852 7.439802741 7.158970781 7.253420872 7.141187486 34330288 fnr Stress Oxygen stress Chromobacterium violaceum ATCC 12472 7.603089557 7.170907086 7.178866755 7.516708594 7.503397747 7.919172797 7.40521854 7.273186769 19909729 gyrB other category gyrB Microcystis wesenbergii superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis wesenbergii; 7.762772499 7.498620769 7.589756314 7.410236118 7.132546048 7.606930065 7.39685883 7.250161469 253577569 glnA Stress Nitrogen limitation Paenibacillus sp. oral taxon 786 str. D14 7.923473105 7.837528796 7.704488311 7.605076097 7.620106497 7.888814068 7.689378962 7.88900887 7.299860178 70732621 pilin virulence pilin Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.047299148 8.264500974 8.174468948 8.458242724 8.34257854 8.202750973 8.616616774 8.66819895 8.392773403 94971502 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Acidobacteria bacterium Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 8.016762205 8.165978805 7.628797581 7.474558138 7.284878926 7.15260391 7.068908801 7.387124895 7.84016446 7.345126073 254453463 pstA Stress Phosphate limitation Octadecabacter antarcticus 238 8.10441453 8.570274115 7.984945323 7.969995799 7.962369401 7.629914255 8.047249264 7.579239273 7.643755647 7.972449742 7.934422752 253568374 glnA Stress Nitrogen limitation Bacteroides sp. 1_1_6 8.243494418 8.583178121 8.605694642 7.983716835 8.887038252 7.121628549 8.531870208 9.076752705 8.569510951 211583958 cellobiase Carbon cycling Carbon degradation Cellulose Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 7.82690894 8.029454568 7.488463691 7.748150218 7.356021412 6.919574009 7.435639307 7.543898288 7.395887282 7.254978862 7.462661997 85702777 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.020799518 8.091431881 7.80881161 7.873503235 7.693802319 7.869634958 7.822139766 7.990865909 8.118844852 7.964169745 156060641 ara_fungi Carbon cycling Carbon degradation Hemicellulose Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 6.938175918 7.111944218 6.982544361 6.831778412 7.330723966 38373203 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.135454227 8.444115127 7.687850591 7.840919989 8.153292778 8.19722192 7.964283308 8.441374712 7.956276034 7.858339371 8.034984315 260906819 glnA Stress Nitrogen limitation Brevibacterium linens BL2 7.208306644 7.730132249 8.037211518 7.147575586 7.448546408 7.454719382 7.52275887 55379145 pimF Organic Remediation Aromatics Aromatic carboxylic acid Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 7.643161938 7.705828551 8.033523536 8.268982098 7.81917684 8.273359339 7.622342494 7.75702174 7.765456456 227272774 endochitinase Carbon cycling Carbon degradation Chitin Kribbella flavida DSM 17836 7.596525611 7.887771182 8.104882404 8.123572597 7.70982595 8.36511497 8.014089323 7.94445193 7.68399744 115422994 nagI Organic Remediation Aromatics Aromatic carboxylic acid Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 8.125929842 8.082230303 8.040877158 7.821396975 8.409627567 8.156005331 8.325976854 8.335742821 8.321139827 46307948 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.914381019 8.192214114 8.06297722 8.152953101 7.984239766 7.645356768 8.023431126 8.180958502 8.156383317 8.009682224 7.67552812 195932339 fnr Stress Oxygen stress Hydrogenobaculum sp. Y04AAS1 7.984070282 8.106172998 7.794717152 7.880751123 7.912801246 7.290433343 7.675343779 7.809914048 7.646582474 7.855380514 7.723038407 124267469 pheA Organic Remediation Aromatics Other aromatics Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 7.980480421 7.957944843 8.216570445 7.606028911 8.290784928 7.972868123 8.158647049 8.203783522 7.649741305 157404796 CopA Metal Resistance Copper Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.566479454 8.030779786 8.098479572 8.23213761 7.48870352 8.154455381 7.600085209 8.018976407 8.365356025 256801781 hrcA Stress Heat shock Streptomyces viridochromogenes DSM 40736 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 7.123641795 7.533275861 7.318222138 7.198576863 7.795888588 7.352517179 7.06234512 117164647 pcc Carbon cycling Carbon fixation Streptomyces ambofaciens ATCC 23877 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ambofaciens; 8.348435871 8.142756735 8.014157433 8.526037528 8.400185528 8.42262921 8.114442647 8.001579901 8.059767117 38490075 4HBH Organic Remediation Aromatics BTEX and related aromatics Roseovarius nubinhibens 7.835455763 7.976785835 8.002985547 8.179812455 8.219050624 8.183555626 8.273644395 8.423163907 8.32108205 120590494 sigma_24 Stress Sigma factors Acidovorax citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 8.164742698 8.131349159 8.087441949 8.086366586 7.672671102 7.906577106 8.171883958 8.42788621 8.519199404 8.135260872 8.232227134 259417626 fnr Stress Oxygen stress Silicibacter sp. TrichCH4B 8.07441295 8.351286127 7.405955259 7.764804147 7.619287949 8.04412267 7.865994867 7.651850032 7.897588554 7.450460032 119504470 pimF Organic Remediation Aromatics Aromatic carboxylic acid marine gamma proteobacterium HTCC2080 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.890536453 8.351518616 8.795597104 8.642643735 8.352805942 8.635930431 8.535128829 8.52692165 8.640491497 78185860 sigma_70 Stress Sigma factors Synechococcus sp. CC9902 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.186948706 7.389334359 7.254271778 6.90429498 7.562606364 112463043 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.24141672 8.193047248 8.079262 8.305804537 8.152352497 7.851370538 8.362679373 8.393743388 8.257382637 7.822054529 7.938004308 237846122 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium 7.36881783 7.27343054 7.313503209 7.419203118 7.921148858 7.750326568 7.62898687 7.725304357 257484795 B_lactamase_C Antibiotic resistance Beta-lactamases Pseudomonas syringae pv. tabaci ATCC 11528 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas amygdali; 7.84198623 7.829233548 7.546692885 7.324932842 7.376242915 7.824776237 7.646701987 7.778989486 7.722967932 28269810 gyrB other category gyrB Lactobacillus plantarum WCFS1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus plantarum; 8.243080039 8.161067486 7.576463438 7.898232771 7.792328254 7.778051709 7.628806274 7.697357202 7.901418524 7.575395153 145215199 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 7.785939034 7.932560007 7.700518623 7.587658542 7.886771669 8.026148219 7.887405119 7.473630907 7.884177736 167346845 xylC Organic Remediation Aromatics BTEX and related aromatics Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 7.878400985 8.138326246 8.091923244 8.358535048 8.315633245 8.333911678 8.159383435 8.553484582 8.327283606 184196547 cellobiase Carbon cycling Carbon degradation Cellulose Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.489513903 7.335756023 7.268979997 6.872419607 6.693844955 7.457377103 7.204382683 6.993795342 154157162 pcc Carbon cycling Carbon fixation Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 7.530360921 7.365364301 241773691 ara Carbon cycling Carbon degradation Hemicellulose Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 7.200173081 7.079601371 7.312649429 7.550880131 7.065035068 8.02679594 7.181540365 7.017005058 7.425052292 258556651 glnA Stress Nitrogen limitation Nakamurella multipartita DSM 44233 8.243352383 7.859917967 7.772562085 7.70847475 7.820466716 8.050106382 7.97202648 7.913802196 7.972840853 35210341 gyrB other category gyrB Alicyclobacillus herbarius superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus; 8.175488228 8.483402987 7.807237829 7.538936465 7.850395641 7.988153334 7.555241014 7.877773082 7.442192222 7.556910217 7.614656914 88855180 proV Stress Osmotic stress marine actinobacterium PHSC20C1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 7.937019486 7.735851801 7.45714874 7.533218283 7.499601538 7.242882728 7.487703419 7.562960188 261857083 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.908779912 7.618256717 7.492662666 7.362809201 14023843 CueO Metal Resistance Copper Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 7.252812092 7.561467585 87199590 TehB Metal Resistance Tellurium Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 8.15736259 7.893192538 7.939546114 7.809578068 8.402310982 8.073042547 8.082992246 7.557567795 119957716 obgE Stress Radiation stress Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 7.645239536 7.84202723 8.146781391 7.572369703 7.8911057 8.093699609 8.303541372 8.08983927 8.072043815 126668689 mer Metal Resistance Mercury Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 8.637210126 8.870046976 8.41486063 8.312652402 8.194848218 7.647207937 7.451495952 7.906338601 7.868454563 8.065961949 3088544 RNA_dependent__RNA_polymerase Bacteria phage REPLICATION Enterobacteria phage MX1 family:Leviviridae;genus:Allolevivirus;species:Enterobacteria phage Qbeta sensu lato; 8.074265662 8.232351184 7.301827271 7.351729556 7.420433227 7.872997771 7.165579704 7.944300039 7.230207635 7.270116966 7.708930234 10039321 gyrB other category gyrB Flexibacter flexilis superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Flexibacter; 7.947900362 8.093891245 7.794498899 7.60258192 7.542800634 7.426731204 7.577063774 7.671909224 7.545185273 7.424732339 7.327573674 146191986 alkK Organic Remediation Others Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.95431674 8.29463623 8.220329037 7.646927681 8.524573727 7.90751633 8.119516494 8.183047772 8.498030181 118647436 CopA Metal Resistance Copper Burkholderia ambifaria MC40-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 7.736557194 7.991467848 7.58969433 8.228969317 8.075678132 8.292330628 7.661254357 7.96433665 7.847644163 99037380 pstB Stress Phosphate limitation Ruegeria sp. TM1040 9.233263838 9.32138847 8.706972947 8.655143289 8.242800031 8.391107942 8.312873803 8.516934885 8.519220821 8.581119362 8.881424202 219992553 sigma_24 Stress Sigma factors Halothermothrix orenii H 168 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Halanaerobiales;family:Halanaerobiaceae;genus:Halothermothrix;species:Halothermothrix orenii; 7.83721226 7.552681405 7.592358828 7.24178428 7.367246033 7.932374057 7.503100639 7.437950993 7.421204875 109452429 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.387615566 7.465586156 7.631572808 7.335457016 7.287461466 7.472936856 7.325989312 7.49414937 7.30622338 197086874 cytochrome Energy process Energy process Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 8.046062491 8.422032119 7.520851924 7.590656788 7.545273973 7.715541653 7.792030391 119225914 Catechol Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 8.00567902 8.230506884 7.730602274 7.827503842 7.331070823 7.708576112 7.741551266 7.960434487 7.608924446 8.004844306 260617393 proV Stress Osmotic stress Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 7.947948107 7.956857693 8.022573037 7.722045967 7.637817883 7.704529746 7.869757089 7.908584324 7.844429034 7.487553887 7.757347967 85819928 CopA Metal Resistance Copper Tenacibaculum sp. MED152 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Polaribacter; 7.483258153 7.372840443 6.985175183 7.111291094 7.248312874 92116169 Arylest Organic Remediation Aromatics Other aromatics Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 7.747462485 7.623401459 7.969154247 7.47202304 7.40775617 7.796937773 219683514 ppx Phosphorus Phosphorus utilization Bifidobacterium animalis subsp. lactis AD011 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 8.19775366 8.021599791 7.783552949 7.76709505 8.22172773 8.447584104 7.964550882 7.725191193 8.165269171 112799404 mer Metal Resistance Mercury uncultured euryarchaeote ARMAN-2 superkingdom:Archaea;phylum:Euryarchaeota;genus:Candidatus Micrarchaeum;species:Candidatus Micrarchaeum acidiphilum; 7.170627601 7.16007342 6.986911639 7.24389686 7.622730297 7.305741129 7.070207298 7.348081183 197625770 cap virulence capsule Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 7.610916568 7.330895691 7.85004889 7.899832311 7.577051394 7.543836468 7.64925385 7.675323396 163868608 gyrB other category gyrB Bartonella tribocorum CIP 105476 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella tribocorum; 7.734318143 7.534957785 7.582762381 7.61982343 7.400579255 7.661118509 7.472795284 7.702688733 7.711711085 166831273 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira; 7.437243681 7.275349971 7.952717891 7.901973155 7.536947499 8.062018717 7.312472592 7.66214639 7.60385736 83835799 pcaG Organic Remediation Aromatics Other aromatics Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 8.792830771 8.478956014 7.869344708 7.420830616 8.257786461 8.526071538 8.12898648 8.392702287 8.29387928 8.288914521 8.151493664 77962720 tfdA Organic Remediation Aromatics Chlorinated aromatics Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 7.715978244 7.371891392 7.204413028 7.464861682 7.404910984 156446871 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.837264593 7.132565412 7.1963623 7.367575047 7.320679123 33415987 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.214417061 7.62153299 7.254041447 7.172579236 7.573442295 7.732622328 7.529172819 7.055563415 7.568174912 145354366 CadA Metal Resistance Cadmium Ostreococcus lucimarinus CCE9901 superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Prasinophyceae;order:Mamiellales;genus:Ostreococcus;species:Ostreococcus 'lucimarinus'; 8.172811013 7.8226455 7.465663588 7.751214835 7.563792953 7.662381012 7.679081888 7.427198711 118170763 nmoA Organic Remediation Aromatics Nitoaromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 7.819121824 7.420478686 7.813342182 7.479326784 7.851478572 7.937419655 7.60582703 74038364 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.261205091 8.02642703 7.811855405 7.80179385 7.228792507 8.05759741 8.141321395 8.020633463 7.618656249 7.715243232 110337507 ChrA Metal Resistance Chromium Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 7.695113287 7.904159174 8.25903389 7.563780372 7.466198548 7.669461129 37925903 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.842972316 8.030952413 7.072416008 7.039780437 7.093307411 6.781065303 6.73278661 7.467442741 6.936289157 7.142384839 7.09621134 239506590 hrcA Stress Heat shock Kosmotoga olearia TBF 19.5.1 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Kosmotoga;species:Kosmotoga olearia; 7.790534057 8.024187563 7.117345216 7.096859323 83837939 mer Metal Resistance Mercury Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 7.554902214 7.161777267 7.461692176 7.833965216 7.372737007 7.169315401 7.484427293 117996395 pcc Carbon cycling Carbon fixation Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 7.500470175 7.60979521 8.26105667 7.27319272 7.638003299 7.383189051 7.921367098 56180046 sigma_24 Stress Sigma factors Idiomarina loihiensis L2TR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina loihiensis; 7.997643783 8.118415854 7.762497509 7.962533942 7.920926289 8.464812664 8.63459808 8.27428591 190713826 ppx Phosphorus Phosphorus utilization Lactobacillus casei BL23 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus casei; 7.309507727 7.315082736 57158185 BADH Organic Remediation Aromatics Other aromatics Corynebacterium glutamicum superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium; 7.762667287 7.580394528 7.581345409 7.28351109 7.629743454 7.954612133 7.837996996 7.638858423 7.546744827 269143253 fnr Stress Oxygen stress Brevundimonas subvibrioides ATCC 15264 7.550985252 7.713818763 7.230217352 7.459283294 7.677503493 7.475537222 67901842 ara_fungi Carbon cycling Carbon degradation Hemicellulose Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.300631123 7.32609299 7.382572253 7.244647967 7.531457942 7.793046053 7.583747552 7.26925697 7.766411275 113888466 iro virulence Shewanella sp. MR-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 7.928819913 8.154520901 7.734955342 7.795775689 7.377515084 7.420163622 7.888019665 7.847268778 7.603662248 7.932025927 145221604 nhh Organic Remediation Aromatics Nitoaromatics Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.140095182 8.118416335 7.175119222 7.318633422 7.275667943 7.53493995 7.437061265 94422196 MFS_antibiotic Antibiotic resistance transporter Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 7.915982434 7.812044871 7.989908378 8.363103006 8.147049161 8.008905645 8.196326062 119716436 CadA Metal Resistance Cadmium Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.19058791 8.673652482 8.719500567 8.524390717 8.104808027 8.308655221 8.753890897 8.624300298 8.598585753 8.564985071 8.544343728 56312125 NirB Nitrogen Assimilatory N reduction Azoarcus sp. EbN1 7.452243321 7.391782244 7.336085899 7.592801694 113726898 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 7.524819632 7.631362115 8.028492822 7.963068472 7.595934316 8.405133635 7.380656466 7.578510562 7.462162181 239598433 ureC Nitrogen Ammonification Staphylococcus warneri L37603 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus warneri; 7.946215514 8.106172998 7.043876573 7.252223274 6.977809369 6.537892245 7.928849297 7.049371022 6.970264085 7.339483197 192287025 iro virulence Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.081688119 7.62132066 7.81077697 7.785178591 7.528157499 7.721661564 7.896111256 8.360470118 116634755 narG Nitrogen Denitrification uncultured bacterium 7.53413769 7.561836288 7.587055459 7.917822486 7.074715347 16082125 GAPDH Bioleaching Carbon fixation Thermoplasma acidophilum DSM 1728;Thermoplasma acidophilum 7.879214989 7.550123343 8.241626771 8.529952265 8.065093409 8.180245284 8.136292228 8.323944822 8.050583725 194562186 ChrA Metal Resistance Chromium Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 8.327246364 8.330610104 8.356037304 8.244317475 8.295243123 8.579429862 8.211008107 8.397420311 8.264451808 269828925 SMR_antibiotics Antibiotic resistance transporter Vibrio alginolyticus 40B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 8.398113236 8.195838213 8.255224842 7.786497707 8.582651157 7.694567423 7.816321083 7.71477214 261365994 narH Stress Oxygen limitation Neisseria mucosa ATCC 25996 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria mucosa; 7.821173519 7.743315282 7.639688453 7.551781655 7.552399476 7.69277033 7.338919889 7.452108047 217504656 AceA Carbon cycling Carbon degradation others Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 8.318622671 8.512278139 8.393578802 8.466068785 8.520337751 8.53117998 8.361176003 8.468898325 8.541218975 94313753 ChrA Metal Resistance Chromium Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 7.962247982 7.975793559 7.699176112 7.666798131 8.068104144 8.201149345 7.772543815 7.723908066 7.92054238 169793374 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.564215251 7.637874309 7.870547574 7.77237517 8.043120369 34497697 silC Metal Resistance Silver Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 7.537374208 7.720250546 7.351379638 7.070284415 7.105228143 7.311048731 7.244029563 7.851171984 170121846 dmsA Organic Remediation Others Escherichia albertii TW07627 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 7.237659189 7.38261427 6.880776507 7.415276856 7.005477625 7.229595349 257464502 pilin virulence pilin Actinobacillus minor 202 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus minor; 7.057954782 7.157004616 7.27848609 6.96579839 6.794115441 7.459734802 6.916260435 7.187947376 86568410 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia sp. CcI3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.165760997 8.256590498 7.58162668 7.571197824 7.878765933 8.080028715 6.759865003 8.105767509 7.389490155 7.59496983 7.516995662 253702166 hrcA Stress Heat shock Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.543306355 8.171285885 8.264944946 8.349027409 8.083370684 8.309086776 8.339493662 8.4511157 8.343099066 8.187658985 8.135039653 146194176 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.87748814 7.642686047 7.799692702 7.623705133 7.353601042 7.672795703 219719652 nitro Organic Remediation Others Stenotrophomonas sp. SKA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 8.125917347 8.078877091 7.385050457 7.082216022 7.281196181 7.533667512 7.99402085 7.764513502 7.737694994 7.997897281 73749196 PceA Organic Remediation Others Dehalococcoides sp. CBDB1 7.815689224 8.126569214 7.400515816 7.813549653 189427231 scaffold Bacteria phage STRUCTURAL Salmonella phage phiSG-JL2 order:Caudovirales;family:Podoviridae;genus:T7-like viruses; 8.021232339 8.133034328 7.226628094 7.069968348 7.414408344 7.230707823 6.98352857 187736325 CadA Metal Resistance Cadmium Akkermansia muciniphila ATCC BAA-835 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Akkermansia;species:Akkermansia muciniphila; 7.341784274 7.385868649 7.336248924 7.11984884 7.459692346 114195919 cellobiase Carbon cycling Carbon degradation Cellulose Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.354937577 7.172174602 7.216447689 7.142314593 7.0528206 7.703465436 7.375572296 7.292124232 115515982 gyrB other category gyrB Rhodopseudomonas palustris BisA53 8.185262987 7.961714464 8.023611819 7.808083436 7.676809598 7.757361704 7.939658003 8.036877045 7.876303954 7.695588596 7.826986614 157285594 narG Nitrogen Denitrification uncultured bacterium 7.995701559 8.069059518 7.65442888 7.880154979 7.489727573 7.681514821 7.646995691 7.753527385 7.754642128 7.620267229 7.749681707 115383217 nirS Nitrogen Denitrification Comamonas denitrificans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 7.758262425 7.604372746 7.534013634 7.385666408 7.82147509 7.710614095 7.73256202 187720245 nhh Organic Remediation Aromatics Nitoaromatics Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8.597261797 8.096771772 7.765069005 8.316584167 8.525187343 8.344777634 8.246315037 7.985426003 8.774798221 8.766919978 8.58812037 86159237 cytochrome Energy process Energy process Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 8.215389117 8.418815097 7.545423906 7.625006654 8.207488504 8.345635675 7.886507929 8.44240116 7.963643595 7.961450801 8.06688223 71279876 cydA Stress Oxygen limitation Colwellia psychrerythraea 34H superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Colwelliaceae;genus:Colwellia;species:Colwellia psychrerythraea; 7.082594605 7.221012255 7.152502418 6.64103367 7.387471527 6.879882693 7.240653464 7.282201909 50839317 fnr Stress Oxygen stress Propionibacterium acnes KPA171202 7.973739089 8.290838297 8.160866454 7.612972239 8.018068232 7.969454308 8.386593141 7.926364526 270733405 sigma_24 Stress Sigma factors Frankia sp. EuI1c superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.325253105 8.334462148 8.051012446 8.23895723 8.617722568 8.216310263 8.454661986 8.301020087 8.28374646 149202827 nagG Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.422874968 8.177225787 8.26421911 8.409757963 8.268901998 8.02688418 8.499674635 8.522794205 8.272814122 8.569062658 7.902274023 iegcoxL75 CODH Carbon cycling Carbon fixation 8.269898882 8.153799143 7.974695424 8.124193541 8.4889799 8.307378597 8.351498027 8.562786957 8.437756048 52005547 xylA Carbon cycling Carbon degradation Hemicellulose Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 8.711643071 8.48686987 7.952938797 8.026939672 8.16526741 8.600311632 8.132406396 7.966586247 8.098606626 8.079773908 115519059 phn Organic Remediation Herbicides related compound Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.553614219 7.542331405 7.631266094 7.705266302 7.063109798 8.111955137 7.450002244 7.606974411 7.751822167 116069548 ppk Phosphorus Phosphorus utilization Synechococcus sp. RS9916 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.75136648 7.921582267 7.872506952 8.019784121 7.785314204 7.987490267 7.426783923 7.690270916 7.589242365 148260265 alkB Organic Remediation Other Hydrocarbons Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 8.218144668 8.102532995 7.801813642 7.958148993 8.398660087 8.121718422 8.479299562 7.987735041 7.60136277 7.721533245 206577388 PobA Organic Remediation Aromatics Aromatic carboxylic acid Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 8.153579194 8.372455122 8.111217364 8.341557132 8.055171923 8.276953164 8.477279915 8.098179356 8.454200215 8.039227904 7.888523675 111026873 LMO Carbon cycling Carbon degradation Others Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 9.21433517 9.161789706 9.189676648 9.374452557 9.186654749 9.27265161 9.587145671 9.183686252 9.520608211 9.30326638 9.050709654 114806607 dsrA Sulphur sulfite reductase Thermoanaerobacter ethanolicus X514 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Thermoanaerobacter; 8.074312407 7.889652311 7.999115444 7.822066807 7.972103731 8.41888954 8.005298017 7.912870068 7.931915502 229864015 clpC Stress Protein stress Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 8.200114848 8.607347435 7.954444522 7.940017794 8.161447645 8.456756862 8.253266084 8.42572795 8.171194698 8.47892256 256757202 sigma_24 Stress Sigma factors Clostridium papyrosolvens DSM 2782 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium papyrosolvens; 7.573502203 8.05653574 7.070288158 7.958671299 7.489141522 7.93379394 115516484 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.848028148 8.282261444 7.845703276 7.843309998 7.311108706 7.702581974 7.615044186 7.802755596 7.503396184 7.380210568 7.315938098 39578127 CODH Carbon cycling Carbon fixation uncultured proteobacterium superkingdom:Bacteria;phylum:Proteobacteria; 8.369266173 8.779684892 8.140273986 7.904992736 7.939651261 7.938118359 8.158029408 8.234929659 8.239858874 7.960142649 8.181107116 77964791 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 6.634363949 6.815294901 269838194 sigma_24 Stress Sigma factors Sphaerobacter thermophilus DSM 20745 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 7.502822756 7.498946009 7.598774453 7.727707265 7.478857436 8.31629259 7.310570972 7.558385745 7.531950561 56378985 SMR_antibiotics Antibiotic resistance transporter Geobacillus kaustophilus HTA426 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus kaustophilus; 8.442782177 8.660651341 7.761979824 7.529286499 7.595710971 7.353400888 7.320520083 7.598020204 7.411961786 7.642723195 154351517 pstB Stress Phosphate limitation Bacillus amyloliquefaciens FZB42 7.733063207 7.530749358 8.030225834 8.135547633 7.123521149 8.643608845 8.171336224 8.055356236 257875589 amyA Carbon cycling Carbon degradation Starch Enterococcus casseliflavus EC20 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus casseliflavus; 8.117125734 8.518119605 7.560230538 7.515700068 7.576723956 7.339089224 7.01040392 7.36399795 7.122545231 7.598860376 240102902 pstB Stress Phosphate limitation Thermococcus gammatolerans EJ3 7.892816167 8.139217174 7.446646992 7.420738152 7.743119542 7.137811775 6.90379182 7.66141234 7.006964709 6.915219025 7.359391521 95929333 sigma_32 Stress Sigma factors Desulfuromonas acetoxidans DSM 684 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Desulfuromonadaceae;genus:Desulfuromonas;species:Desulfuromonas acetoxidans; 8.881899462 8.947093989 7.717985638 8.632719403 8.794413454 7.83861327 7.386254709 8.162507062 8.021767678 110283129 CadA Metal Resistance Cadmium Mesorhizobium sp. BNC1 7.510057018 7.449551025 7.844841025 8.793127274 7.770310769 8.041039327 8.284390619 7.63624125 7.936363828 110820347 sigma_24 Stress Sigma factors Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.064581643 8.108227242 8.101832301 7.905252435 8.615561955 8.295987826 8.202361711 7.890025995 8.464646983 254819341 pstA Stress Phosphate limitation Mycobacterium intracellulare ATCC 13950 8.49581061 8.933658041 8.739413104 8.27234705 8.951049925 8.296970083 8.767954931 8.562382913 8.934024107 126232710 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.479180274 8.57842807 8.437586597 8.610711924 8.709411825 8.287893578 26541541 fnr Stress Oxygen stress Streptomyces atroolivaceus 7.794722141 7.615433657 7.904696079 7.602488589 7.708770664 7.455749084 7.909037606 27348356 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.446037659 8.197179673 8.266054031 7.948719603 8.373056362 8.366794014 8.185412028 8.231301265 8.206850264 8.156809191 7.888452503 206676750 grpE Stress Heat shock Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.49089755 7.446434855 6.908220211 7.505845167 7.498405712 7.386861823 7.685292423 110339774 obgE Stress Radiation stress Chlorobium ferrooxidans DSM 13031 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium ferrooxidans; 8.548774573 8.749449488 8.164806997 7.706101595 7.929089328 7.528442964 7.314639951 7.623531292 7.681040169 7.983040119 94556598 obgE Stress Radiation stress Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 8.076042274 8.240217157 7.825061328 7.648829746 7.498451557 7.465240437 7.886356328 7.906083997 7.730229089 7.77745056 110623060 arsB Metal Resistance Arsenic Microbacterium sp. A33 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium; 8.046073298 8.580191168 7.447428486 7.837204099 8.172407766 8.243641003 7.58217359 7.848543788 7.929737124 7.710797486 94556550 SMR_antibiotics Antibiotic resistance transporter Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 7.433814008 7.434410674 7.469183618 7.675670162 7.13864546 7.107669842 240857958 pstC Stress Phosphate limitation Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.954941461 7.865366906 8.00105057 7.417688271 7.83926188 8.021996046 7.902336372 8.039565208 7.599271279 163742952 sigma_32 Stress Sigma factors Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 7.617559648 7.660826542 7.64213028 7.251830761 7.679905582 7.661345457 7.721972854 56696200 nhh Organic Remediation Aromatics Nitoaromatics Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 8.371306963 7.873142986 7.537931416 8.046363748 8.151195862 8.273950229 8.239179447 8.075343666 7.974503171 124010469 TerD Metal Resistance Tellurium Microscilla marina ATCC 23134 8.103362438 8.089384053 7.53191527 7.429299092 7.729825013 7.569016657 8.23377775 7.407190812 7.458511164 7.457506204 26278754 narG Nitrogen Denitrification uncultured bacterium 8.205207894 7.950432169 7.709356028 8.089159341 7.936686715 8.01074089 7.825716685 7.686907425 7.64438722 18958171 nicdehydr Organic Remediation Aromatics Heterocyclic aromatics Arthrobacter oxydans superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8.319691384 8.405805708 8.076075551 8.230572136 8.145069673 8.134982217 8.45586592 8.358410133 8.565692308 8.046401524 8.069406911 21106985 nmoA Organic Remediation Aromatics Nitoaromatics Xanthomonas axonopodis pv. citri str. 306 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas axonopodis; 8.420228204 8.477489279 7.781377297 7.613639885 8.13988652 8.155812223 7.90600227 8.399755677 7.691024381 7.588336321 239820248 fnr Stress Oxygen stress Variovorax paradoxus S110 8.381793062 7.956537521 7.810890221 7.914511622 7.893276237 8.010031481 8.032914134 7.968212641 7.681411571 124894014 ArsC Metal Resistance Arsenic Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 8.607289879 8.280046988 7.852710929 7.719126702 7.911405126 7.92266849 8.309463426 7.958082369 7.855445211 7.936520985 118424425 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.018866327 8.068478264 7.098947307 7.001480944 7.074264925 6.770934738 7.287207516 255932543 pectinase Carbon cycling Carbon degradation Pectin Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 8.003264569 8.416053312 8.080174871 7.789684326 7.398892067 7.616542534 8.028591948 7.714444861 7.914775124 84510550 sigma_24 Stress Sigma factors Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 7.806168998 7.326211047 7.581751975 7.360207827 7.503740133 7.75950525 7.472653068 7.285166648 7.27061758 50083917 SMR_antibiotics Antibiotic resistance transporter Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 7.752451067 7.763105258 7.795819421 7.889857356 7.925634196 8.26956859 8.094859081 7.997077694 51855556 nrfA Nitrogen Dissimilatory N reduction Symbiobacterium thermophilum IAM 14863 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVIII. Incertae Sedis;genus:Symbiobacterium;species:Symbiobacterium thermophilum; 7.68304051 8.305017792 8.171101239 8.20020507 8.075842141 7.842882194 7.863212912 7.768009065 114800305 hrcA Stress Heat shock Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 10.59357263 10.59006231 10.04902406 148474842 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.605896833 7.4527443 7.366693358 7.440994891 7.260238474 7.61536369 7.454088087 7.761153626 7.245723961 113901791 pcc Carbon cycling Carbon fixation Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 8.375210019 8.221134054 7.995064648 8.05163576 8.085634306 7.842714631 8.273070023 8.27361092 8.258963376 8.002194606 8.057353614 115370713 pilin virulence pilin Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 8.531413786 8.579850316 8.284866135 8.329327649 8.205364228 8.078870318 8.315117247 8.538449184 8.521270711 8.074892807 211958953 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 7.456278542 7.715855732 7.247432369 7.342760944 7.129131433 7.661428413 7.547192469 7.247532933 160890467 pcc Carbon cycling Carbon fixation Bacteroides uniformis ATCC 8492 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides uniformis; 7.47834481 7.522324458 7.360818344 7.265405723 7.288013213 7.573011944 7.122599085 7.15921116 272531750 iro virulence Burkholderia sp. CCGE1002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.969291586 7.874614495 7.722445278 7.806567505 7.988862683 8.080515193 7.89881684 8.29294269 7.848074015 7.760072437 7.661354155 7190080 type_III_secretion virulence secretion Chlamydia muridarum Nigg superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Chlamydiaceae;genus:Chlamydia;species:Chlamydia muridarum; 8.057159016 8.217389139 7.473881407 7.541758974 7.58764856 7.666586749 7.399351217 7.382066226 7.30528576 7.597585855 254040180 glnA Stress Nitrogen limitation Candidatus Liberibacter asiaticus str. psy62 7.134601568 7.332940927 6.89128831 7.585663551 157912194 nagG Organic Remediation Aromatics Aromatic carboxylic acid Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 8.395331324 8.475925875 7.734732948 7.668434007 8.165707724 8.022044804 7.784478527 7.712528593 7.804645721 8.14707903 59717371 ppk Phosphorus Phosphorus utilization Neisseria gonorrhoeae FA 1090 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria gonorrhoeae; 7.49268256 7.500368533 7.236373122 6.970686226 7.064235055 7.489346306 7.404682246 7.620436368 7.406668215 238795920 iuc virulence aerobactin Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 8.483995443 8.521942316 8.24661901 8.719667472 8.686256933 8.552831034 8.615144369 8.10137943 8.12794822 34017072 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7.843240048 8.036488333 7.525141186 7.739790342 7.904946591 7.677234551 iegcoxL45 CODH Carbon cycling Carbon fixation 7.827205304 7.905502983 7.458934735 7.684384171 7.385253191 7.179078892 7.347741288 7.789682067 7.342439358 7.224423394 13936679 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.048634987 8.122084812 7.428451485 7.009704653 7.301759628 6.854931782 6.515524222 6.943988564 7.257852407 7.614675808 153869740 cap virulence capsule Beggiatoa sp. PS superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Beggiatoa; 7.993262896 8.458354968 8.088799188 8.279920281 8.239818826 8.140714908 8.507884344 8.122470264 8.599591296 8.275530638 8.147368335 76057005 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.021620565 7.889946314 7.295610394 7.118059906 7.111920771 7.418561033 6.747507166 6.967427986 7.317443524 6.959187556 190687534 glucoamylase Carbon cycling Carbon degradation Starch Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 7.774407619 7.541911241 7.839051684 7.901384876 7.748532829 7.820965394 7.629361442 7.645866299 7.895138976 112955899 endochitinase Carbon cycling Carbon degradation Chitin Botryotinia fuckeliana superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia; 7.910563691 8.147132082 7.442186326 7.903382356 7.977804268 7.761372555 7.848112127 7.505320142 30250258 sigma_24 Stress Sigma factors Nitrosomonas europaea ATCC 19718 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas europaea; 7.888327777 7.903554408 6.858655225 6.97711629 7.358143412 7.246509655 6.94598959 7.545339034 6.986450547 6.911567927 6.774062042 170720636 cytochrome Energy process Energy process Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.890424529 7.439388999 7.985665027 8.555847377 7.94877285 8.408691966 7.916713556 7.962850219 7.727904931 196204132 CopA Metal Resistance Copper Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.222753731 7.984344426 7.678297595 7.544061106 7.617926989 7.28675877 7.39045375 7.690333505 7.343992564 7.545988358 7.396199447 209966789 alkK Organic Remediation Others Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 7.907169679 7.880307673 8.302594161 7.911651739 7.715660575 7.587287832 7.803745001 8.05546649 7.761144245 7.669409181 7.63862133 77378655 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.000878251 8.135864818 7.237783232 7.784404431 7.866817966 7.779975053 7.573089797 8.018722622 8.003766201 7.364514389 7.940571144 699226 pstB Stress Phosphate limitation Mycobacterium leprae 8.095708775 7.886756981 7.632535885 7.934101069 7.97405279 7.9055035 8.063350811 8.088623924 7.670763434 84694062 Apc Organic Remediation Aromatics BTEX and related aromatics Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8.447285116 8.382529636 8.217982764 8.720504971 8.59188924 8.51786283 8.378212096 8.333287887 8.439721213 119773668 cytochrome Energy process Energy process Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 7.780954402 7.45089716 7.674735473 7.408070095 7.056380353 7.429432097 7.929546039 112821378 bphA Organic Remediation Aromatics Polycyclic aromatics Sphingomonas sp. KA1 8.064591572 7.901769994 7.466573318 7.248284177 7.387779425 7.08680042 6.90024852 7.530753988 7.274773389 7.26170858 116050383 ZntA Metal Resistance Zinc Pseudomonas aeruginosa UCBPP-PA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 7.560321495 7.668841346 7.900006434 7.456872854 7.857474472 7.827285163 7.871082491 196482330 tfdA Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 7.741093128 7.77211161 7.902165124 7.642489164 7.55771236 8.025134496 7.243819675 7.407337672 7.576168509 33576184 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bordetella bronchiseptica RB50 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella bronchiseptica; 8.482943161 8.444257091 8.38691303 8.502331788 8.383451378 8.172779725 8.751216763 8.297530317 8.553895818 8.553038117 7.791349909 255502889 nirS Nitrogen Denitrification uncultured bacterium 8.350126318 8.230429963 8.411904753 8.429069484 8.273710459 8.352773789 8.776808054 8.510254518 8.413340155 8.506182291 8.3966044 90954589 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.663924142 8.81419512 8.237737758 8.18675739 8.452885363 8.375509909 8.271177348 8.367715431 8.125160873 8.37259718 8.454932045 148254879 nifH Nitrogen Nitrogen fixation Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.124497452 8.021604513 7.599630052 7.709246333 8.209011586 8.071623671 7.966365232 8.175405314 7.903001605 8.006479578 7.925381729 119875513 nbaC Organic Remediation Aromatics Nitoaromatics Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 8.51889929 8.491789718 8.446173335 8.022611182 8.04093389 8.016974755 8.470966298 148358442 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Legionella pneumophila str. Corby superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella;species:Legionella pneumophila; 8.118364836 8.682858554 7.45762982 7.180587634 7.146195037 158329959 HBH Organic Remediation Aromatics BTEX and related aromatics Azorhizobium caulinodans ORS 571 8.174888969 8.294467496 8.061543885 7.972465282 8.015431742 7.616952625 7.994001805 8.042270367 7.841520286 8.069925402 7.646150165 126737747 obgE Stress Radiation stress Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.485507251 7.536381945 7.778492756 7.228115294 7.57558365 8.028722548 8.028134192 8.126471675 8.178381365 161521553 nitA Organic Remediation Aromatics Other aromatics Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 7.258896551 7.326282057 7.202109584 7.224219437 8.141454259 7.522723045 7.450370087 149204288 gyrB other category gyrB Roseovarius sp. TM1035 8.260265044 8.003691371 8.033565115 8.300487568 8.022198317 8.481802747 8.403853808 8.469726169 222055057 ChrA Metal Resistance Chromium Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 7.512397436 7.454741392 7.751519314 7.092593562 7.563529147 7.623535938 7.599751262 7.57311974 7.705532162 258513606 ctsR Stress Protein stress Desulfotomaculum acetoxidans DSM 771 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum acetoxidans; 8.025605205 7.980626944 7.380113293 7.35797455 7.379119319 7.318211021 7.343492896 7.676020623 84705251 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Parvularcula bermudensis HTCC2503 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 7.922167135 8.096311555 8.443858247 8.414574554 8.58620818 8.45538911 8.456750004 8.580588998 8.381578276 189346408 CopA Metal Resistance Copper Chlorobium limicola DSM 245 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium limicola; 7.926236716 8.177735572 7.173190731 7.294920712 7.400096929 7.147508002 7.69793797 7.34983305 7.229472714 7.431495501 119964059 xylA Carbon cycling Carbon degradation Hemicellulose Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 7.948199865 7.928179299 7.907321886 7.675647052 7.853590414 8.022893893 7.943409716 7.745927019 159876575 pcc Carbon cycling Carbon fixation Flavobacteriales bacterium ALC-1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales; 7.962274003 7.564376492 7.573782374 7.31646065 7.617869645 149129203 catB Organic Remediation Aromatics BTEX and related aromatics Bacteroides caccae ATCC 43185 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides caccae; 8.235138785 8.303895434 7.758963872 7.748237391 7.551851008 7.678749163 7.49550853 7.924104667 7.620690994 7.773920556 7.66217029 219858660 TerC Metal Resistance Tellurium Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 7.898845605 7.781908159 7.800182688 7.612619745 7.459459915 7.874926351 7.22028529 7.423437685 7.506625486 111148204 pcc Carbon cycling Carbon fixation Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 8.614347066 8.469370739 8.671879277 8.74445352 8.454281651 8.396225138 8.93017287 8.46473736 8.622759282 8.439427509 8.529712256 126647203 ahpC Stress Oxygen stress Algoriphagus sp. PR1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cyclobacteriaceae;genus:Algoriphagus; 8.54260177 8.670854932 7.826770485 7.413118281 7.7276535 7.391094584 7.396618532 7.648458797 7.816504956 8.027659562 169240268 hly virulence hemolysin Mycobacterium abscessus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.149312922 8.078442229 6.991899161 7.750328643 7.973650097 8.106060453 7.656885608 7.538961886 8.057936794 7.887433601 27372223 nagG Organic Remediation Aromatics Aromatic carboxylic acid Pigmentiphaga sp. NDS-2 7.590447054 7.627365625 7.438869806 7.334175522 7.609980076 7.616281612 7.543260247 7.50063399 7.612515856 199593981 narG Nitrogen Denitrification uncultured bacterium 8.114380072 8.051971843 7.677281734 7.50347265 7.500173425 7.627860709 7.721336862 7.689446712 45600806 sigma_70 Stress Sigma factors Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira interrogans; 6.910570025 7.221288847 7.092171251 6.965636082 6.921175921 84704841 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Parvularcula bermudensis HTCC2503 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 8.043732908 8.41291771 8.029176266 8.213103868 8.474666307 8.120945371 8.031829652 8.383875419 8.017351047 8.290127225 7.867085872 67902724 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.640024026 7.737961177 7.630833728 7.448324711 7.520564704 8.015088015 7.810613753 7.434333329 7.467249925 257065194 ahpF Stress Oxygen stress Slackia heliotrinireducens DSM 20476 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Slackia;species:Slackia heliotrinireducens; 7.568701742 7.980636852 8.111802372 8.544994359 7.839979959 7.814780774 8.008520831 7.914736372 229213848 pstB Stress Phosphate limitation Dethiosulfovibrio peptidovorans DSM 11002 7.376132112 7.387743057 7.694750099 7.567446741 7.383032523 7.957898106 7.761991413 7.552125948 7.437042237 146342200 phn Organic Remediation Herbicides related compound Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.636418427 7.474753791 7.572714965 7.692991713 7.652006565 7.953476361 7.959307007 7.780956916 7.90221227 148663115 alkB Organic Remediation Other Hydrocarbons Mycobacterium tuberculosis H37Ra superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 7.481162715 7.293838439 7.367818499 7.789544157 7.188744969 7.233810666 224018014 pstB Stress Phosphate limitation Bacteroides coprophilus DSM 18228 8.147045808 8.125813036 7.289848018 7.64662197 7.833953879 7.824369358 7.081754979 7.175346464 88176065 nitA Organic Remediation Aromatics Other aromatics Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 8.445101341 8.275119994 7.728874714 7.769546323 8.104731378 8.310617922 8.015318662 8.478728128 7.68507293 7.86616152 7.792203803 119859409 nmoA Organic Remediation Aromatics Nitoaromatics Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.147059261 7.730803911 7.058967599 7.195774043 7.619954847 7.63184424 27530060 gyrB other category gyrB Legionella rubrilucens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella; 8.694678558 8.612287836 7.872521933 7.88502985 8.329054823 8.651584503 7.922465871 8.710813426 8.038771567 8.237518342 8.28140077 89155339 rubisco Carbon cycling Carbon fixation Bacillus weihenstephanensis KBAB4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus weihenstephanensis; 6.971541128 6.964421236 108755448 gyrB other category gyrB Segniliparus rugosus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Segniliparaceae;genus:Segniliparus; 7.914811824 8.130442625 8.404970411 8.5337114 8.502714525 8.309328807 8.755355148 8.744969997 240250089 ara Carbon cycling Carbon degradation Hemicellulose Bifidobacterium animalis subsp. lactis DSM 10140 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 7.910100152 8.053874765 6.890969873 7.509442936 7.57862229 7.178236236 7.920789986 7.310624838 7.851655834 77820044 nirS Nitrogen Denitrification uncultured organism 7.646260362 7.36776478 7.135439185 7.370607859 7.176726886 7.645615981 7.517080392 7.799094244 7.063344958 179346894 ChrA Metal Resistance Chromium Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 7.481426641 7.301838117 7.799322517 7.921503186 8.211803985 7.970310366 7.676931132 209401696 narG Nitrogen Denitrification uncultured bacterium 8.812615863 8.180685061 8.290182582 8.280869827 8.132759769 8.211326488 8.762044983 8.503882064 8.353060461 8.046675859 8.294007596 197731403 amyA Carbon cycling Carbon degradation Starch Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 8.242884475 8.008478673 7.510338076 7.951014234 7.804371334 7.378795075 8.097799953 7.897463742 7.820644343 7.766352093 167991807 ppk Phosphorus Phosphorus utilization "5],12:i:- str. CVM23701" superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 8.166479453 8.434038389 8.440765998 8.102487544 8.745890593 8.024165308 8.434729574 8.666300964 8.411370929 118703443 oxdB Organic Remediation Aromatics Nitoaromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.072629025 8.037001789 7.825142216 8.452027478 8.064243733 8.180950057 8.144157699 8.101709472 94471127 narG Nitrogen Denitrification uncultured bacterium 7.941054519 7.487244486 7.745296323 7.477815498 7.567117111 8.091842337 8.031726162 7.550532917 7.778214027 124268546 phdCI Organic Remediation Aromatics Polycyclic aromatics Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 7.362369782 7.590708762 7.944288985 8.008688806 7.308141375 8.092444771 7.476870131 7.795862955 7.705024191 171057123 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 8.600536932 8.662300907 8.488373941 8.53702954 7.984658163 7.874963361 8.132164531 8.113211986 8.148931257 8.088586348 8.323615645 116090303 aoxB Metal Resistance Arsenic Sinorhizobium sp. DAO10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium; 7.961506134 8.014734489 7.801522927 7.06182046 7.771522359 7.645966649 7.630859954 7.841363706 7.930370452 269095602 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Sanguibacter keddieii DSM 10542 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Sanguibacteraceae;genus:Sanguibacter;species:Sanguibacter keddieii; 7.893107148 7.931826908 7.961420022 7.955482941 7.968992941 8.166985982 8.128097769 8.165675326 8.026110036 145240735 endochitinase Carbon cycling Carbon degradation Chitin Aspergillus niger 7.162276339 7.07534517 6.982989959 7.183214138 120593979 xylL Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 7.572546251 6.983102201 7.613581271 7.512068845 7.647637349 146193593 nhh Organic Remediation Aromatics Nitoaromatics Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.725252642 7.680157573 7.661505757 7.914758809 7.89455585 7.881905917 7.57728663 7.553193913 66044057 TerD Metal Resistance Tellurium Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 7.254892431 7.077544765 7.273108135 7.013908025 262262377 proV Stress Osmotic stress Streptococcus sp. 2_1_36FAA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 7.061770302 7.220430042 7.377487357 7.273676094 6.937700686 7.40666319 6.926988419 6.982398432 912494 exoglucanase Carbon cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Cochliobolus; 7.533194756 7.581917973 7.276890259 6.88403621 7.77926241 7.287970512 7.139349676 7.508404987 149201686 katE Stress Oxygen stress Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.198694378 8.269872851 7.175039718 7.353147746 7.375876485 7.257728448 6.715374923 7.859594862 6.978978056 6.824650132 7.274397699 67532854 alkB Organic Remediation Other Hydrocarbons Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 7.933080599 7.820116299 8.249545948 8.502166686 8.102107254 8.508226271 8.039559469 8.158728217 8.125161279 226091363 nirK Nitrogen Denitrification Gemmatimonas aurantiaca T-27 superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 6.981726298 7.151375453 6.944725878 7.294294078 91692476 MFS_antibiotic Antibiotic resistance transporter Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.228954138 7.362392198 7.546438162 7.231864463 7.526479298 7.802968304 7.665206003 7.321758939 7.827853128 148553226 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.259536668 8.130135077 7.515152574 8.06597579 8.178022746 8.238320079 7.661349954 8.202179567 7.669537112 7.950737403 8.149649365 88855892 SMR_antibiotics Antibiotic resistance transporter marine actinobacterium PHSC20C1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 8.252183629 8.416035082 7.776601527 7.804131298 8.021681931 7.944402472 7.781785559 8.106760229 7.95914463 8.259866201 7.957656918 34104244 endochitinase Carbon cycling Carbon degradation Chitin Chromobacterium violaceum ATCC 12472 7.584319544 7.607322772 7.147969768 7.4672372 7.396178026 7.613054701 7.10345509 7.111461673 7.035198281 146403578 phn Organic Remediation Herbicides related compound Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 7.735697562 7.592618698 7.737256254 7.618320257 7.959162409 7.790377861 7.81793603 7.595227229 7.73283987 163262125 napA Nitrogen Dissimilatory N reduction Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 8.333304536 8.333265035 7.510084455 7.607511227 7.881764165 8.172845994 7.614419535 8.345450136 7.548655993 7.403929174 7.674042314 47573738 rubisco Carbon cycling Carbon fixation Rubrivivax gelatinosus PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 7.605380235 7.389079228 7.548595366 7.725365698 7.181389302 7.825439158 7.374017472 7.155255651 27349262 sox Sulphur Sulphur oxidation Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 9.040652513 9.201605234 8.635569156 8.400913673 8.583912776 8.273799534 8.605631073 8.724509415 8.708096275 8.804479253 114326852 ArsC Metal Resistance Arsenic Granulibacter bethesdensis CGDNIH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 8.119139776 8.053848527 7.408162192 7.483586472 7.917255502 7.950742833 7.759574028 7.991575546 8.086790861 7.829859282 8.163821387 56312804 Apc Organic Remediation Aromatics BTEX and related aromatics Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 8.62678921 8.068408075 7.73719693 8.364953359 8.490580323 8.342517975 8.339778231 8.188416699 7.950235926 161329304 pilin virulence pilin Shewanella benthica KT99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella benthica; 8.246123772 8.686173287 7.727843626 7.665691184 7.658268737 7.570579368 7.133724593 7.65551745 7.681457153 125714336 pstB Stress Phosphate limitation Clostridium thermocellum ATCC 27405 7.242378901 7.180455154 7.271797577 7.074160957 7.141047893 7.738350184 7.4271313 7.190407777 7.07013352 255269723 ara Carbon cycling Carbon degradation Hemicellulose Bryantella formatexigens DSM 14469 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;species:Bryantella formatexigens; 7.594657429 7.885580033 7.971898135 8.239431848 7.978321295 8.330718453 8.402150631 8.447471921 8.174225451 256775116 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces hygroscopicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces hygroscopicus; 8.470808573 8.273268708 8.352730728 8.079813446 7.958663379 7.57774002 8.452650743 8.063414624 7.838283672 8.069131547 7.968291332 199598731 obgE Stress Radiation stress Lactobacillus rhamnosus HN001 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 8.372355767 8.140913151 8.178148092 7.983620851 8.218552733 7.568067523 8.180963634 8.123164703 7.785733089 8.191722264 8.181426232 99036967 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.744177962 7.582678666 8.175518631 8.348620184 7.732761396 8.437646115 7.45154587 7.556857895 7.621465166 39996839 cytochrome Energy process Energy process Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 8.80504466 8.516750532 8.538457322 8.503098806 8.862945858 7.466350753 8.789696136 7.969223506 7.997513343 8.595067912 93354571 Catechol Organic Remediation Aromatics Other aromatics Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.092439053 8.261502865 7.990676155 7.833027339 7.599755174 7.805354505 7.906207424 8.073831319 7.828491417 7.786766794 7.578564654 145576081 glnA Stress Nitrogen limitation Pseudomonas mendocina ymp 8.352789839 8.170772755 7.494445105 7.880184182 8.124858216 8.356823291 7.497800883 8.08105026 7.709144923 7.805117539 7.707252833 32443930 sigma_70 Stress Sigma factors Rhodopirellula baltica SH 1 9.439139171 9.317054254 9.699183757 9.143559423 9.735438194 9.46355948 9.662280473 9.53038278 9.605777561 9.670174509 9.7580173 52549158 mcrA Carbon cycling Methane Methane production uncultured archaeon GZfos26B2 superkingdom:Archaea; 7.121986769 7.450905289 7.828033319 7.763843232 7.435832028 7.416249242 7.489639084 7.779389788 126180228 glnA Stress Nitrogen limitation Methanoculleus marisnigri JR1 8.176334176 8.308674659 8.447036052 8.306991804 8.536537434 7.757223574 8.499896502 8.000845158 229611196 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.875202607 8.159369962 7.309626266 7.6564773 7.267026045 7.626808365 7.143243411 7.65536598 7.291507723 7.320187498 7.573320337 109632821 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.907362343 8.16941323 7.581781892 7.62687875 8.27248282 7.929631278 7.922079854 8.431968972 220913983 nitA Organic Remediation Aromatics Other aromatics Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 8.373791698 8.516502899 8.466817458 8.437585207 8.000594362 8.318923834 8.261651554 8.613707265 8.400181075 8.21677744 8.025464378 127512653 cytochrome Energy process Energy process Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 7.383020821 7.783246113 7.863089965 7.263477695 7.717943648 7.538682933 7.834001156 7.593200131 219536582 dsrB Sulphur sulfite reductase Desulfitobacterium hafniense DCB-2 7.224287475 7.213003273 7.273943553 255503323 obgE Stress Radiation stress Chlamydia trachomatis 70s superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Chlamydiaceae;genus:Chlamydia;species:Chlamydia trachomatis; 8.41727579 8.57044618 8.028857083 8.09542413 8.135091446 7.79993697 7.570315228 8.260727052 7.756326429 7.842045846 8.033172024 157679062 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.448899262 8.334602676 7.360968419 7.864399469 8.04934835 8.209247151 7.320589521 7.668702427 7.447280554 8.239151547 258531510 AceA Carbon cycling Carbon degradation others Pantoea sp. At-9b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 7.538729144 7.472094023 7.818860854 8.067554494 7.529159206 8.275865269 7.53585786 7.803746836 7.375895326 134300588 tutFDG Organic Remediation Aromatics BTEX and related aromatics Desulfotomaculum reducens MI-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum reducens; 7.892475497 8.020818851 6.933756406 7.088253545 6.48769551 7.346481201 7.028799147 6.863326209 7.214780977 120401918 limEH Carbon cycling Carbon degradation Others Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 7.434714319 7.101488908 160879813 pstB Stress Phosphate limitation Clostridium phytofermentans ISDg 8.602691691 8.414299318 8.029023736 7.971255267 7.83850528 7.652655159 7.396267134 7.7530901 7.614263407 7.357783255 7.874961793 71854338 tutFDG Organic Remediation Aromatics BTEX and related aromatics Streptococcus pyogenes MGAS5005 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus pyogenes; 7.470937754 7.086898761 7.122091627 6.982613907 7.307411247 7.729214398 146399405 nifH Nitrogen Nitrogen fixation Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 8.446569696 8.418318947 8.233118954 8.354405339 8.573582245 8.286894647 8.446023034 8.231051425 7.922789204 11498036 dsrB Sulphur sulfite reductase Archaeoglobus fulgidus DSM 4304 7.064614446 7.403197935 162955448 obgE Stress Radiation stress Renibacterium salmoninarum ATCC 33209 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Renibacterium;species:Renibacterium salmoninarum; 8.353402846 8.286218543 8.476653672 8.472785174 8.300247003 8.212348599 8.486084361 8.234838649 8.457923855 8.274161064 7.906164303 126738765 sigma_70 Stress Sigma factors Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.697436847 8.003714042 7.590962556 8.116042488 8.34165004 8.051533152 8.08618599 7.889346637 8.097835491 257895885 cda Carbon cycling Carbon degradation Starch Enterococcus faecium Com12 8.34100567 8.523019658 7.435376563 7.167288983 7.575992026 7.159606343 6.902624751 7.234771288 7.50065244 7.643293661 163839654 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Renibacterium salmoninarum ATCC 33209 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Renibacterium;species:Renibacterium salmoninarum; 8.00001167 8.119006157 7.362929644 7.560537631 7.792414761 7.584234743 7.534898362 7.941815418 7.698494346 7.801978488 7.665748442 126236581 xylJ Organic Remediation Aromatics BTEX and related aromatics Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.135497411 7.774595751 7.712696146 7.723873467 7.653259189 7.727518322 7.541297835 7.652212535 7.244494519 119718729 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.252623886 8.368078943 7.277303146 7.076751177 8.03589381 8.185437976 7.015712215 7.346358261 7.716655302 7.704352489 189025264 groEL Stress Heat shock Treponema pallidum subsp. pallidum SS14 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema pallidum; 8.192403328 8.466024897 7.453649327 7.827384807 7.623220436 7.464711092 7.334112074 7.848472677 7.720732533 269922723 BchY other category chlorophyllide reductase Brevundimonas subvibrioides ATCC 15264 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas;species:Brevundimonas subvibrioides; 7.987304033 7.807337312 7.333433613 7.770976511 7.740572951 7.818729098 7.623210927 7.794057668 7.142685158 94310975 fnr Stress Oxygen stress Ralstonia metallidurans CH34 7.201266475 7.144948164 7.343174503 7.036871303 6.809053311 7.598883903 7.383740472 7.243003606 7.392553141 94470939 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.509457153 7.29792089 7.279681052 6.839407681 6.916772708 7.51857611 7.250252377 7.359859242 49531365 cydB Stress Oxygen limitation Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 8.321459671 8.382586093 7.803155718 7.502638728 7.669255686 6.857736435 7.621913319 7.421629004 7.292142507 83652181 ahpF Stress Oxygen stress Burkholderia thailandensis E264 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 8.607698846 8.366308494 8.064120246 8.374512579 8.532603015 8.199135488 8.527603892 8.511616844 8.647941078 24984261 exaA Organic Remediation Chlorinated solvents Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.742157853 7.896106254 8.204223283 8.342844372 7.87369558 32306887 xylC Organic Remediation Aromatics BTEX and related aromatics Acinetobacter sp. ADP1 7.740299794 7.34739417 7.485167135 7.410793276 6.900822797 7.800396501 7.019809079 7.213739319 148654276 sigma_24 Stress Sigma factors Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 9.609512131 9.594625338 10.06632108 9.664635754 9.123237959 9.732213402 9.920975739 9.472490639 9.041796508 9.233976041 221731150 pilin virulence pilin Diaphorobacter sp. TPSY superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax ebreus; 8.49815348 8.300161557 8.85439543 8.617723121 8.719609263 7.934068698 8.639978195 8.708210096 8.340916694 8.709138201 8.129032033 83593414 glnA Stress Nitrogen limitation Rhodospirillum rubrum ATCC 11170 7.882253473 7.776016052 7.594114751 7.680251828 8.054897718 7.696748544 7.833715789 7.523043721 86158616 cytochrome Energy process Energy process Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 7.799480656 7.897092273 8.534182085 7.59985104 8.498189176 7.8387299 8.057669054 7.791963918 37813033 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7.203977529 7.0168664 7.018569157 7.551247654 167703854 Al Metal Resistance Aluminum Clostridium ramosum DSM 1402 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichi;order:Erysipelotrichales;family:Erysipelotrichaceae;species:Clostridium ramosum; 7.215062275 7.02797441 254396451 sigma_24 Stress Sigma factors Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 8.383327567 8.164084215 8.295170878 8.377210771 8.666162035 8.485394453 8.715785313 8.722625236 8.713672584 254474416 sox Sulphur Sulphur oxidation Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.369292558 7.830627625 8.07612282 7.419836674 7.823919128 7.464151582 7.03230867 7.573204545 145571461 ChrA Metal Resistance Chromium Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 8.038043204 7.953761274 7.326535879 7.089488742 6.884129396 6.919846335 7.530298077 6.904102663 7.12766834 149196297 gyrB other category gyrB Lentisphaera araneosa HTCC2155 superkingdom:Bacteria;phylum:Lentisphaerae;order:Lentisphaerales;family:Lentisphaeraceae;genus:Lentisphaera;species:Lentisphaera araneosa; 7.902988508 7.573202588 8.136045128 7.988180928 7.432868152 8.092872146 7.566269352 7.817616441 7.404122847 158520438 pbrA Metal Resistance Lead Desulfococcus oleovorans Hxd3 7.960735672 8.369992304 7.699165042 7.479815082 7.137591967 7.334724651 7.375628293 7.796394934 7.492364871 7.312707491 7.431226408 22450003 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.239365346 7.821585634 7.76259579 7.932825331 8.203087665 8.267364179 7.835823351 7.767654 7.683290132 162282710 nagG Organic Remediation Aromatics Aromatic carboxylic acid Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 7.982110835 8.45055521 7.621109915 7.811551372 7.790324219 8.031364153 7.941080066 7.562682935 7.426866516 7.719995216 240142271 sigma_70 Stress Sigma factors Methylobacterium extorquens AM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 7.944899151 8.020548595 7.857157736 7.94568273 7.865607965 7.950786884 7.97959349 7.698347903 7.714238477 170692416 Arylest Organic Remediation Aromatics Other aromatics Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 7.972523498 8.197202407 7.511950587 7.969792749 7.581706409 7.585010355 8.01911763 7.990813481 7.806481837 7.881067307 170140514 iro virulence Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 7.913145624 8.19209996 7.160451179 7.197280779 7.746124848 7.292414648 7.012462269 7.957729816 7.384495245 7.196086361 7.473676091 189333389 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 8.156800879 8.178129337 7.913597428 8.042924924 7.833918294 7.416825591 8.041358747 8.07019191 8.121405034 7.985452117 7.993277012 39997302 cytochrome Energy process Energy process Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 7.473574393 7.310517838 6.813796655 7.405613574 78360083 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Shewanella sp. PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 7.966710743 7.941913177 8.025501423 8.224049104 7.80221238 7.303626166 7.648039262 7.077046548 208009514 pstC Stress Phosphate limitation Aliivibrio salmonicida LFI1238 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Aliivibrio salmonicida; 8.534081359 8.405676599 8.311131605 8.463942118 8.182539872 8.283000185 8.818724746 8.408965833 8.762847949 8.427729937 8.359767152 14090317 dsrA Sulphur sulfite reductase Desulfovibrio longus superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 7.920807449 7.952407186 7.764866548 7.842501874 8.014564067 8.239396878 8.053768765 7.854672881 7.703092036 171991524 ahpF Stress Oxygen stress Exiguobacterium sibiricum 255-15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 7.900240027 7.921015456 7.777265306 7.752166271 7.863522295 7.937754426 8.118735944 7.687060556 7.439276738 120594320 nagK Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 7.922931039 8.261406972 7.219564116 7.408005243 7.800468199 7.836037516 6.993517031 8.053287944 7.478648905 7.251055647 7.469918144 12720234 katE Stress Oxygen stress Pasteurella multocida subsp. multocida str. Pm70 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Pasteurella;species:Pasteurella multocida; 8.030256004 8.110159238 7.338994783 7.378855083 7.46996524 7.164766862 7.53829691 7.671243157 7.626701586 7.681666965 99030537 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 7.317793152 7.291018639 7.075237656 6.782345785 6.791690019 7.456465955 7.024853917 7.25891142 21225108 pstA Stress Phosphate limitation Streptomyces coelicolor A3(2) 7.965416112 7.875628152 8.341691092 7.769981816 8.317376706 7.840259875 8.268301018 8.360632727 8.370196601 88818185 aclB Carbon cycling Carbon fixation Pseudoalteromonas tunicata D2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas tunicata; 7.733312084 7.979215169 7.195002306 7.239261869 7.156828136 6.59240681 7.286218305 6.960874053 7.264261712 94470791 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.151097604 8.061671602 7.271156638 7.539943151 7.581641924 7.285679435 7.191561113 7.586873083 7.161543855 7.212635913 7.549517221 238024859 iro virulence Burkholderia glumae BGR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia glumae; 7.659022671 7.992411294 8.326407512 7.496476258 8.203318554 7.66262184 7.6796888 7.862309577 239808026 pstA Stress Phosphate limitation Geobacillus sp. WCH70 7.936481353 8.172777061 7.636679896 7.577817663 7.588245705 7.31432679 7.221004113 7.767359735 7.185690694 7.4641465 7.610878054 256360258 vanA Carbon cycling Carbon degradation Others Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 8.09088495 8.040562205 8.013292703 7.776007175 8.364985549 8.307896298 8.245762437 8.274569581 7.900041804 197787255 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 7.571708863 7.760617081 7.758701651 7.994588686 7.74395962 7.601705578 7.841989019 7.742133067 209401744 narG Nitrogen Denitrification uncultured bacterium 7.889354524 7.913390499 7.776140396 7.53480176 7.960769553 8.047329531 7.849986712 7.603695535 7.839936705 225169183 fnr Stress Oxygen stress Dethiobacter alkaliphilus AHT 1 8.076378294 8.71023067 8.205496747 8.322397097 8.19796078 8.244502545 8.376660252 8.321331538 8.562827924 8.59830745 8.598357601 71733334 cytochrome Energy process Energy process Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 7.018628032 7.205025915 7.709256814 7.420677449 7.119026119 7.934468955 7.052715965 7.204110001 7.322359823 118467571 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 7.458188957 7.551573866 7.913896668 7.988757084 7.179116183 7.269231124 7.598255082 7.534680819 86162794 proV Stress Osmotic stress Marinomonas sp. MED121 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 7.965157715 7.927999427 7.553830578 7.216538283 7.448103429 6.936169186 7.414911691 iegAssA13 AssA Carbon cycling Carbon degradation Others 8.117159611 7.959287509 8.262051056 8.195521715 7.956146795 8.049189119 7.939815191 7.68484808 7.604295526 227947717 rubisco Carbon cycling Carbon fixation Meiothermus ruber DSM 1279 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 8.089697246 8.380706162 8.019187195 7.769517393 7.912620006 7.310078022 7.608219595 7.690748939 7.557498392 7.824953439 7.716033737 255268656 ahpF Stress Oxygen stress Bryantella formatexigens DSM 14469 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;species:Bryantella formatexigens; 7.406086515 7.363134443 7.357146638 7.01322793 6.840314896 7.478932788 7.203957499 7.369456042 7.361158664 227952906 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 7.455746624 7.789551165 7.636147782 7.707042371 7.677188183 7.801477788 7.55679507 7.212644116 7.463948144 124121961 gyrB other category gyrB Vibrio cholerae MZO-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 7.935357605 8.099644026 7.889673122 7.510317059 7.569757072 7.707395578 8.136577558 7.875459887 7.774258343 7.86158532 7.702268885 146270256 mer Metal Resistance Mercury Dehalococcoides sp. BAV1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.250686884 7.390903832 7.23239361 7.380345375 7.89191517 7.614363327 7.58351591 7.605180469 119383953 ureC Nitrogen Ammonification Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.065398139 7.892039945 7.898067716 8.015459202 7.610623496 7.802004735 7.803923328 7.567521401 7.773623049 119395259 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 8.010737168 8.111001637 7.559648913 7.459985544 7.378932032 7.25218918 7.241807821 7.614590463 7.522455711 7.334841396 7.428937503 219994846 APS_AprA Sulphur adenylylsulfate reductase Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 8.162683701 8.165005512 7.959400243 7.894157541 7.744376434 7.441715207 7.844758269 8.036266807 7.638473877 7.361182767 7.678502814 34104983 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 7.716766381 8.026022704 227507810 obgE Stress Radiation stress Gardnerella vaginalis ATCC 14019 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Gardnerella;species:Gardnerella vaginalis; 8.463883765 7.688737738 8.015086683 8.000743748 7.721350501 8.29217973 8.536401207 8.273896116 56695306 bphC Organic Remediation Aromatics Polycyclic aromatics Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 8.765034178 8.671060074 8.464105677 8.535728381 8.354255572 8.100503174 8.511681793 8.058273269 8.611954649 8.779267699 8.802956842 152026936 sigma_24 Stress Sigma factors Anaeromyxobacter sp. Fw109-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 8.518177324 7.915971996 7.504372727 7.917722482 8.333550233 8.231575401 7.829054656 8.536202111 7.824721824 7.634860186 7.840002191 69155069 ChrA Metal Resistance Chromium Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.485889473 8.952136836 8.576973186 8.504757044 7.990085134 8.529902334 9.159981121 8.815760185 8.879903827 8.614884252 9.062702751 15807213 TerZ Metal Resistance Tellurium Deinococcus radiodurans R1 8.119954315 8.347676526 8.262016614 8.26669918 8.227232427 7.743621631 8.30532762 7.953886778 7.979422139 8.296490718 8.451221617 46307952 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.092778757 8.264830009 8.343958342 8.013784332 8.429034625 8.260022493 8.286820737 8.277251995 7.962949635 78609260 gyrB other category gyrB Lactobacillus sakei subsp. sakei 23K superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus sakei; 7.92593168 8.078864296 7.45110028 7.297188611 7.221064981 6.85768898 7.67851492 6.835378591 6.898402337 7.342194095 114562537 pstB Stress Phosphate limitation Shewanella frigidimarina NCIMB 400 7.823142398 8.159334592 7.263649054 6.956402493 7.074382364 6.66496033 7.324041795 6.878873008 7.277582056 169826547 alkK Organic Remediation Others Lysinibacillus sphaericus C3-41 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Lysinibacillus;species:Lysinibacillus sphaericus; 7.616728981 7.713068777 268037943 CODH Carbon cycling Carbon fixation Burkholderia sp. EB2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.308141346 8.220590406 7.653836933 7.538383931 7.405916116 6.937686592 7.622928001 7.322548521 7.276454976 7.658745324 118003212 ChrA Metal Resistance Chromium Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.330549209 7.202460361 145244905 hdnO Organic Remediation Aromatics Heterocyclic aromatics Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.290566651 7.250152349 7.389268503 6.840137442 6.911610216 7.606825043 7.23860849 7.177297277 7.505997879 160880482 cda Carbon cycling Carbon degradation Starch Clostridium phytofermentans ISDg 8.091457004 8.162785663 7.52798488 7.681164992 7.441643259 6.782898455 7.384260944 7.163879772 6.948871002 7.467013998 111020052 chnB Organic Remediation Other Hydrocarbons Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.405295036 8.332392086 8.56190422 8.61588634 8.569391941 8.830019207 9.028085709 8.702051499 9.116310431 8.989062126 9.02443764 171095372 fnr Stress Oxygen stress Burkholderia ambifaria MEX-5 7.64494225 7.766852628 8.090468005 8.165502086 8.006185419 8.14170147 7.70624319 8.040920451 7.97076679 212636529 sigma_24 Stress Sigma factors Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 8.137856395 8.22982538 7.483419327 7.454472617 7.356472567 7.009025752 7.003030265 7.912562453 7.300654582 7.359041335 160900503 ahpF Stress Oxygen stress Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.126926052 8.261332391 7.604707737 7.51160489 7.345113683 7.423512131 7.427173067 7.594159288 7.759479183 7.640710728 160917595 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.59961027 8.320401958 8.524388814 8.495341654 8.540304778 8.504439457 8.542080492 8.579648466 8.623667991 8.761365928 8.691895669 209521161 akbD Organic Remediation Aromatics BTEX and related aromatics Burkholderia sp. H160 7.981367045 7.887195542 7.783848195 7.969043554 7.808268152 8.09963995 7.812559644 7.736387741 7.752986617 154495210 sigma_70 Stress Sigma factors Parabacteroides merdae ATCC 43184 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides merdae; 6.507180884 7.1770329 209494114 pstB Stress Phosphate limitation Arthrospira maxima CS-328 7.328503703 7.470957816 7.697711886 7.668747184 7.373015701 8.096480917 7.397695536 7.205837526 7.392776852 84043129 pcaG Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 8.492158075 8.495286724 8.689675269 8.329468534 8.243226568 8.393825114 8.337535434 8.812775154 8.140187243 8.240108123 8.447113351 158321187 CopA Metal Resistance Copper Alkaliphilus oremlandii OhILAs 8.073623626 8.173196069 7.255455318 7.320775321 6.820174912 7.340142105 198263969 rd Organic Remediation Chlorinated solvents Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 8.034193449 7.994081782 7.750553799 7.837057797 8.288390138 8.161617693 7.790354434 8.181338229 111027009 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7.894333695 7.849208435 7.669926654 7.735137597 8.311897482 8.054351782 8.237885346 7.918243295 7.788369376 146229606 nosZ Nitrogen Denitrification Achromobacter xylosoxidans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter; 8.242190882 8.203781071 7.474857617 7.642220524 7.550819996 6.744785484 6.993375575 7.355090868 7.80626912 192764398 narG Nitrogen Denitrification uncultured bacterium 7.115242849 7.417071122 7.598370248 7.365860964 7.652862379 7.518946052 146339371 HBH Organic Remediation Aromatics BTEX and related aromatics Bradyrhizobium sp. ORS278 7.782833941 7.622706199 7.537791878 7.474972098 7.883547527 7.753295555 7.989836833 7.861422415 7.98959321 99034863 sigma_24 Stress Sigma factors Ruegeria sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.966611131 8.033304692 8.193730525 7.680222647 8.215936804 7.863907419 8.003029306 7.994706787 7.903765874 50121937 amyA Carbon cycling Carbon degradation Starch Erwinia carotovora subsp. atroseptica SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 9.038043093 9.101755732 8.63071335 8.36441906 8.119219931 8.34394894 8.160326133 8.304991943 8.14479409 8.358545653 68198408 pulA Carbon cycling Carbon degradation Starch Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.553633376 8.234235903 7.780749266 8.656627384 8.696770602 8.438691231 8.686538614 8.125594579 8.372134203 8.55674976 188583011 scnABC Organic Remediation Others Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 9.721331544 9.872882017 9.137985627 9.124266938 9.034352852 9.014627011 9.035080915 8.813952841 9.160114591 9.104457834 9.404587761 110340125 pstC Stress Phosphate limitation Chlorobium ferrooxidans DSM 13031 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium ferrooxidans; 7.821746567 7.811273917 7.509252917 7.560216448 7.587559991 7.821000378 7.771675376 7.336538563 7.643398763 146275509 nahA Organic Remediation Aromatics Polycyclic aromatics Novosphingobium aromaticivorans DSM 12444 8.759513509 8.32190735 8.108401637 8.309895871 8.71007742 8.752829102 8.307954776 8.414403727 8.090032388 8.162390272 8.049248126 158140066 ChrA Metal Resistance Chromium Alkaliphilus oremlandii OhILAs superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus oremlandii; 8.433128011 8.474437491 8.021832913 7.969711643 7.837263399 7.891962263 7.879125565 8.200510925 8.042333244 8.039436041 8.158824382 115256236 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.201181204 8.390810464 7.901514261 7.936865983 7.923556049 7.609428266 8.000407094 8.115401497 8.193554289 8.152771054 8.082901972 210620885 bco Organic Remediation Aromatics Aromatic carboxylic acid Clostridium hiranonis DSM 13275 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hiranonis; 8.323118228 8.396997462 8.097395302 7.635274565 7.507669136 7.335433446 7.293322086 7.985870427 7.519080161 7.770754751 114566538 glnA Stress Nitrogen limitation Syntrophomonas wolfei subsp. wolfei str. Goettingen 8.214721876 8.052339588 7.533348104 7.385075651 7.748368306 7.492325352 7.179700315 8.204018092 7.426053368 7.322100869 7.489839949 52784460 amyA Carbon cycling Carbon degradation Starch Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 8.28179007 8.460950158 7.879765633 7.908509603 7.7423145 7.677879944 7.721811721 7.927971968 7.85779245 7.911345857 8.066399348 256757685 ahpF Stress Oxygen stress Thiomonas intermedia K12 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas;species:Thiomonas intermedia; 7.702655525 7.882963313 8.084204577 7.7326907 8.162173528 7.887107932 8.208324699 7.868871689 8.103656086 169643675 mnp Carbon cycling Carbon degradation Lignin Phlebia sp. MG60 8.367188064 8.514288084 7.968617707 7.996301992 7.729721298 7.415644319 7.427120265 7.735014147 7.851065818 7.300410266 7.863702555 119539140 pstB Stress Phosphate limitation Nocardioides sp. JS614 7.441293518 7.418248503 8.089881705 8.286796055 7.592767089 7.87640264 7.413443699 7.651773784 7.679065771 163745312 vanA Carbon cycling Carbon degradation Others Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 8.570603097 8.213384253 7.513608295 7.618649937 8.228999002 8.36134839 7.967719092 8.319290925 7.993866342 8.020396394 8.219553989 198264086 ArsC Metal Resistance Arsenic Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 7.602957256 7.659841832 7.422071474 7.889846445 7.717121409 7.479728415 7.53793683 219939168 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.019533334 8.404735457 7.069658575 7.681986465 229537212 sigma_24 Stress Sigma factors Planctomyces limnophilus DSM 3776 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces limnophilus; 7.271179395 7.515487576 7.449872461 6.868986248 7.004901812 7.769384405 60476230 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.887960196 8.068000053 8.019331663 7.650842271 7.597699454 7.713026069 7.853034391 7.705468288 7.46180604 7.459626678 7.524491693 158251630 APS_AprA Sulphur adenylylsulfate reductase uncultured archaeon 8.230226545 8.176866422 8.465972913 8.174883909 7.876755696 7.957994675 8.066132625 7.972856887 7.863654576 7.614131648 7.624260766 188589807 glnA Stress Nitrogen limitation Clostridium botulinum E3 str. Alaska E43 7.841781532 8.187350011 7.109404659 7.125904298 7.025304914 189203295 nbaC Organic Remediation Aromatics Nitoaromatics Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 6.804487254 7.057466679 7.030783268 145965682 AceB Carbon cycling Carbon degradation others Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 8.375030884 8.022538413 162454145 sigma_70 Stress Sigma factors Sorangium cellulosum 'So ce 56' 8.221514067 8.27211188 8.031145447 7.82860021 8.197343018 8.24633815 8.194561586 8.103855276 8.241164086 149357555 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 7.486745983 7.563797714 8.020028058 8.167868978 7.610883135 8.050287933 7.37404878 8.062866575 7.489518201 240145048 grpE Stress Heat shock Roseburia intestinalis L1-82 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia intestinalis; 7.269146102 7.314802195 7.234668232 6.957377359 148254805 mer Metal Resistance Mercury Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.995382833 8.328305051 7.384033235 7.425990774 7.370727009 7.403300361 7.404573444 7.38915891 7.507058499 7.451443901 153003831 cytochrome Energy process Energy process Anaeromyxobacter sp. Fw109-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 8.061788652 7.690017759 7.660126857 7.840240365 7.977158952 7.904374676 7.542818417 7.427746645 34419245 UvsW Bacteria phage REPLICATION Vibrio phage KVP40 7.774120687 7.965474126 7.309501586 7.290090643 7.108643639 6.878389308 7.09699596 7.326978327 7.143452717 7.311862323 7.479150294 218938119 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 8.032803673 8.396811388 8.00625603 7.792686713 7.740810595 7.825210764 7.934229894 8.074824318 7.950619766 7.570267172 242780705 AceA Carbon cycling Carbon degradation others Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 7.80533407 7.978353031 7.275451715 7.210401033 7.098625714 6.866584698 7.389137251 7.163962825 7.470073691 7.432700825 33601729 nagG Organic Remediation Aromatics Aromatic carboxylic acid Bordetella bronchiseptica RB50 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella bronchiseptica; 8.091081529 8.048402974 8.046153825 8.080646547 8.441008168 8.237972337 8.228893969 7.765037202 8.422265106 2854060 xylanase Carbon cycling Carbon degradation Hemicellulose Bacillus sp. KK-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 8.410173383 8.288575726 8.561098678 8.10167705 8.376510234 8.185924911 8.637284454 38194138 Xamo Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 8.814685401 8.583871363 8.385360683 8.475851618 8.880156696 9.051002819 8.607491891 8.90621914 8.583767972 8.425422698 8.858970135 213536665 exoglucanase Carbon cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.996077102 8.324331302 7.339963771 7.396646147 7.674928609 8.341577121 7.780313306 7.720509995 7.484014677 7.882916542 261361667 lip Carbon cycling Carbon degradation Lignin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Phyllachorales;genus:Verticillium;species:Verticillium albo-atrum; 7.55519581 7.20241405 7.265757383 7.182638852 6.76470333 7.489111328 7.401434405 7.269985303 7.066588187 88702667 nosZ Nitrogen Denitrification uncultured soil bacterium superkingdom:Bacteria; 7.542029243 7.311758846 7.334791444 7.235276012 120436609 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Gramella forsetii KT0803 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Gramella;species:Gramella forsetii; 7.399173682 7.338804605 7.226306123 7.120778077 7.205238181 7.482863331 7.242618519 7.323129632 7.386547577 283821574 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 8.540702597 8.919405845 8.763141992 8.435470732 9.06263855 8.68849648 8.690707528 8.882173009 188585774 atzA Organic Remediation Herbicides related compound Natranaerobius thermophilus JW/NM-WN-LF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Natranaerobiales;family:Natranaerobiaceae;genus:Natranaerobius;species:Natranaerobius thermophilus; 7.397312102 7.185076681 7.209585443 6.977242707 7.431858093 121607962 vanA Carbon cycling Carbon degradation Others Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 8.547231651 8.52948607 8.28759914 8.759780804 8.698419652 8.764731292 8.47019449 8.513703999 8.711731866 8.628391011 226240298 pcc Carbon cycling Carbon fixation Rhodococcus opacus B4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 8.062730608 8.248054107 8.432421791 8.135826358 8.00832821 8.219075339 8.336097586 8.373873876 8.23347097 8.025237713 8.155560685 262258620 pstB Stress Phosphate limitation Acinetobacter calcoaceticus RUH2202 7.161240411 7.076303402 229365275 pstB Stress Phosphate limitation Pseudomonas fluorescens SBW25 7.879440857 7.512580389 7.456820061 7.419346423 7.761953175 56708836 4HBH Organic Remediation Aromatics BTEX and related aromatics Silicibacter pomeroyi DSS-3 7.78833779 8.144691766 7.604938818 7.969391667 7.173327391 7.554565209 7.448560921 8.202013889 211958632 oxyR Stress Oxygen stress Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 7.848799293 8.041830696 7.642339587 7.721082551 7.416997055 7.910963086 7.376213889 7.402240916 7.83892125 254351698 pilin virulence pilin Legionella drancourtii LLAP12 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella;species:Legionella drancourtii; 8.459555692 8.475795324 8.538571677 8.327119816 8.711050671 8.476662511 8.582373611 8.379812416 8.480521459 190014392 TerC Metal Resistance Tellurium Stenotrophomonas maltophilia K279a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 7.123371555 7.314576015 7.288118653 7.720203337 7.139932041 7.53478052 209901954 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.207552732 7.03583797 6.636408972 7.925592455 226944427 nasA Nitrogen Assimilatory N reduction Azotobacter vinelandii DJ superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 7.902720388 8.189859407 6.940518846 7.110749584 7.278599865 6.876825686 6.623424195 7.563337541 7.045395949 6.931811877 257463606 cap virulence capsule Fusobacterium sp. D12 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteria;order:Fusobacteriales;family:Fusobacteriaceae;genus:Fusobacterium; 8.188506386 8.418705873 8.370236413 7.652480966 7.680553202 7.755255042 7.661581541 8.102385831 7.880668252 7.721460155 7.835371247 148868962 pstB Stress Phosphate limitation Vibrio harveyi HY01 8.134625248 8.35192477 8.06246228 7.610828583 8.447842222 8.06039647 8.023448453 7.81114084 7.941705613 90856158 sox Sulphur Sulphur oxidation Allochromatium vinosum superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium; 7.36894958 7.912412881 8.128518727 7.476018555 8.100482703 7.597572008 7.494910451 8.04684174 89512974 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.990040224 8.136661742 7.232037825 7.131595692 7.185266927 6.875858833 7.538925334 7.083772093 7.024775223 7.251550047 126722232 bphD Organic Remediation Aromatics Polycyclic aromatics Rhodococcus rhodochrous superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7.742151522 7.534914139 7.470203577 7.385039017 7.262289402 7.738890029 7.380054899 7.234485019 7.35247593 20086266 dsrA Sulphur sulfite reductase Desulfomicrobium orale superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfomicrobiaceae;genus:Desulfomicrobium; 7.734748425 7.467750043 7.696494211 7.576328145 7.735545938 7.534158915 7.597049509 7.449301598 74053780 cumA Organic Remediation Aromatics Other aromatics uncultured bacterium 6.753628692 7.213160157 6.797326289 6.829298603 10441632 xylG Organic Remediation Aromatics Aromatic carboxylic acid Comamonas sp. JS765 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 8.082518675 7.746408309 8.051334532 8.574068275 7.922571159 8.525355292 7.703467394 7.586878438 7.680666532 239794537 SMR_antibiotics Antibiotic resistance transporter Desulfovibrio magneticus RS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio magneticus; 7.200003408 7.284677946 7.473921656 7.170995217 7.809530357 7.403942634 7.135440825 74316585 sox Sulphur Sulphur oxidation Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 7.946382325 7.724570291 7.633360206 7.296898051 7.335191953 7.419222152 7.464547643 8.010495137 7.6444597 115401252 pectinase Carbon cycling Carbon degradation Pectin Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.335952143 7.949685969 8.031623417 7.379442537 7.562963661 7.945172866 7.507086801 7.672992422 7.583201822 39578101 CODH Carbon cycling Carbon fixation uncultured proteobacterium superkingdom:Bacteria;phylum:Proteobacteria; 7.49083085 7.548404583 7.596561652 7.679425646 7.522379414 7.795898492 7.005690754 7.587064601 7.342049979 194538789 CopA Metal Resistance Copper Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.5455424 7.843591493 7.841543922 8.227848026 7.452379309 7.789945033 149359165 phdCI Organic Remediation Aromatics Polycyclic aromatics Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 7.717668609 8.204401602 7.105756755 7.242651097 7.268079843 7.517803656 149950559 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus metalliredigens; 7.22759212 7.500339474 7.196157823 6.878850926 194336184 ahpC Stress Oxygen stress Pelodictyon phaeoclathratiforme BU-1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 6.721187856 7.432012242 56068671 merT Metal Resistance Mercury Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.031234085 8.410433357 7.632653633 7.546130477 7.742737055 7.84332071 7.430823574 7.466750477 7.76079336 7.831854859 126721096 bclA Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.720553567 8.703180203 8.190157575 8.507038862 9.026029064 8.254626587 8.63032927 8.230247355 8.340974466 8.881367659 71039467 pstC Stress Phosphate limitation Psychrobacter arcticus 273-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter arcticus; 7.855362837 8.408632667 7.541761116 7.483609934 7.184822573 6.774490078 7.578626925 7.200887194 7.105681803 7.421486823 74057545 hrcA Stress Heat shock Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 8.827236617 8.669098946 8.907834122 8.738839802 8.477560377 8.564486097 9.012731431 8.773946345 8.730528011 8.336126944 8.514495583 212531693 Catechol Organic Remediation Aromatics Other aromatics Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 8.065589698 8.043476198 7.177215567 7.331382141 7.416149595 7.319213066 6.72785374 7.199566193 7.610944619 77118185 primase Bacteria phage REPLICATION Enterobacteria phage K1F 6.632113153 7.105427569 6.631444827 6.859294421 7.29491566 6.917326161 7.346083944 196480526 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 8.028583328 8.524699573 8.32480104 8.113937053 7.945554732 8.254875075 8.653429726 8.303525007 8.410618763 8.155036721 8.270493802 72383848 sigma_70 Stress Sigma factors Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.799405759 7.873202839 7.496202208 7.626887572 7.360976395 7.725361553 7.189940662 7.010269265 125487489 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces sp. C203 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.231665924 8.406764279 8.347943187 8.384820141 8.404212764 8.038115952 8.536339579 8.241690733 8.404529794 8.369421489 8.28762072 116333158 srt virulence surface protein Lactobacillus brevis ATCC 367 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus brevis; 8.283788756 8.458923529 7.513826568 7.448387716 7.580729711 7.289570655 7.758906247 7.294692747 7.437731616 7.507939609 227409522 hrcA Stress Heat shock Geodermatophilus obscurus DSM 43160 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Geodermatophilus;species:Geodermatophilus obscurus; 8.389521596 8.541184004 8.168520427 8.349801168 8.223309688 8.069726771 8.24717361 8.308463559 8.395899433 7.97371508 8.253315855 119955799 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.142367575 7.832182562 7.69455855 8.31230193 8.023669042 8.216202571 8.092061254 7.925624359 7.501724176 37221871 nhh Organic Remediation Aromatics Nitoaromatics Rhodococcus erythropolis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7.870311668 8.369590798 7.524107709 7.418943699 7.4751389 7.178291628 7.58119349 46240772 tfdA Organic Remediation Aromatics Chlorinated aromatics Bradyrhizobium sp. BDV5680 7.915565516 8.107230114 7.69396743 7.949325718 8.033990416 8.15663367 7.85387423 7.824450343 7.968085481 7.805858201 218564142 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.413505568 7.618079861 7.777664818 7.055647126 7.748814702 7.475108446 7.782730329 7.49497491 72383884 phdCI Organic Remediation Aromatics Polycyclic aromatics Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.823629221 8.051919267 7.489886791 7.37261266 7.18315062 6.673705933 7.081370434 7.264255312 7.118020149 7.297295138 157368763 phn Organic Remediation Herbicides related compound Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 7.173149029 7.582732849 7.014243267 7.056894784 222447460 TerC Metal Resistance Tellurium Chloroflexus sp. Y-400-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus; 7.763817172 8.073475661 8.268260774 8.238773522 8.064771284 8.601322481 8.409786042 8.076291705 8.278296594 29466086 norB Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.61191519 7.971087389 8.133380772 8.116848725 7.986142875 8.227505723 8.216520838 8.311631596 8.622000911 247546131 hly virulence hemolysin Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.993148791 8.354368357 7.262652393 7.231536753 6.891481113 7.496934067 7.138669079 7.404739831 46447131 hrcA Stress Heat shock Candidatus Protochlamydia amoebophila UWE25 superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Parachlamydiaceae;genus:Candidatus Protochlamydia;species:Candidatus Protochlamydia amoebophila; 8.868052352 9.294778505 8.399033207 8.277840107 8.163835701 7.891185681 7.845532423 6.974916253 7.94161761 7.96766921 8.413854106 257838099 fnr Stress Oxygen stress Enterococcus faecium Com15 7.246327474 7.085920765 7.490098502 7.051729249 7.744272642 7.101297497 7.130012132 7.434723695 254819339 pstS Stress Phosphate limitation Mycobacterium intracellulare ATCC 13950 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 7.436259876 7.730797676 7.708013877 7.550979827 7.232189435 7.799742484 7.590247267 7.904729017 7.32515462 4927242 katE Stress Oxygen stress Ajellomyces capsulatus superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces; 8.310540967 8.416089842 7.638459115 7.671066637 7.653739788 7.546198189 7.477521157 7.212797318 7.565812911 7.480942841 7.549626761 196477557 alkK Organic Remediation Others Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 8.259124358 8.201623345 8.318456166 7.682509901 8.27400335 8.084549974 8.118405799 8.256524613 7.877337676 170176927 fnr Stress Oxygen stress Thermotoga sp. RQ2 7.693188731 7.537527664 7.711391216 7.135901452 7.039894505 8.0919229 7.476917347 7.380688854 149202156 AceB Carbon cycling Carbon degradation others Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.581109913 8.588122261 7.989394362 7.962943794 8.001287432 8.016998735 7.959156773 8.371668284 8.066263356 7.887209695 8.006111718 114308726 iro virulence Nitrosomonas eutropha C91 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas eutropha; 7.964123579 7.68639417 7.714573734 7.438798996 7.67664607 8.130608589 7.754877099 7.598615746 7.75774887 196229076 sigma_24 Stress Sigma factors Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 8.096203268 8.25138486 7.719986692 7.795560192 8.306076713 8.22900788 7.815039958 8.705171598 7.95960255 7.912837489 8.016872735 154423268 Catechol Organic Remediation Aromatics Other aromatics Alcaligenes sp. NyZ215 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes; 7.307995149 7.481315833 7.781295821 7.778618896 7.705126379 8.01063861 7.744894194 7.837190785 7.873698348 150028714 sigma_24 Stress Sigma factors Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 7.998020795 8.062763794 7.535237592 7.4645479 7.362486691 7.021797341 7.481326932 7.739269779 7.45203342 7.519244875 7.209687283 119951707 glnA Stress Nitrogen limitation Arthrobacter aurescens TC1 8.073328797 8.446464177 7.913966779 7.637523105 7.957246674 7.590833499 7.476653656 7.984570466 7.521830501 7.577030268 8.157115525 113525993 alkK Organic Remediation Others Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 7.488519171 7.389634917 7.476900953 7.677296564 7.831005683 7.796294012 7.522014849 148553217 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.35071717 7.899830625 8.001680794 8.473558645 8.3300648 7.876394404 7.836259145 7.784920815 152027405 nrfA Nitrogen Dissimilatory N reduction Anaeromyxobacter sp. Fw109-5 8.186524009 8.561181767 8.099568914 8.235445195 8.304953724 7.817608575 8.200151883 8.191872002 8.166497796 8.254388109 8.249736661 161391104 CopA Metal Resistance Copper Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 7.641583109 7.664174968 7.581364414 7.858126209 7.81112951 8.07799047 7.95517102 7.914761909 7.72109571 229330318 fnr Stress Oxygen stress Geobacillus sp. Y412MC52 7.943256199 8.21938009 8.108078084 7.485481963 7.909655715 7.847068513 7.906455989 7.828655571 146281555 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 7.644329978 7.32669296 8.016289372 7.932510999 7.919375517 8.08739729 8.03615754 7.859362381 8.032434525 228563874 ctsR Stress Protein stress Dethiosulfovibrio peptidovorans DSM 11002 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Dethiosulfovibrio;species:Dethiosulfovibrio peptidovorans; 8.389529261 8.091886391 8.241161606 8.137781361 7.820237282 8.073635168 7.901826253 7.871795565 7.774547395 7.894399068 33391357 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.217752975 8.262273983 8.05071672 7.928604495 8.414844604 8.432078834 8.121641503 7.886079559 145607311 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 8.164646575 8.203656937 7.318664137 7.565974553 7.168739809 7.039048109 7.545991172 7.140611039 7.440944923 118467382 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.174927066 8.339058493 8.20389069 8.043132621 7.669836618 7.829822065 7.890172748 8.464274339 8.101826584 8.102057107 7.975994136 148474736 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.137640799 7.063956248 7.058696503 6.64945926 149792878 pulA Carbon cycling Carbon degradation Starch Thermosipho melanesiensis BI429 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermosipho;species:Thermosipho melanesiensis; 7.246615726 7.032192715 226095069 oxyR Stress Oxygen stress Brevibacillus brevis NBRC 100599 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus brevis; 7.056606657 7.134395657 7.236691269 6.830198686 7.005586883 7.528546685 7.387633787 7.098692379 88706328 ZntA Metal Resistance Zinc gamma proteobacterium KT 71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 7.636912265 7.705600786 7.66593868 7.754976385 7.440725574 7.863577005 7.865924019 7.394338154 7.755261817 109898714 nitA Organic Remediation Aromatics Other aromatics Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 7.484691549 7.30509374 7.032089876 7.828200558 7.652800666 7.357835007 84665298 alkK Organic Remediation Others Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.178772898 8.421160734 8.85962842 8.703804142 8.737923006 8.46109132 8.650951218 8.149354364 8.475132284 8.500899006 8.066211492 260216211 ahpF Stress Oxygen stress Cronobacter turicensis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter; 7.603215372 7.578870174 7.034424317 7.605615402 7.219744721 7.547606242 74057992 narI Stress Oxygen limitation Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 8.347799918 8.367159231 7.669941047 7.599976668 7.676953249 8.241860995 7.989367731 8.315695066 7.858695131 8.083019728 7.992282616 171915940 sigma_24 Stress Sigma factors Verrucomicrobium spinosum DSM 4136 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Verrucomicrobium;species:Verrucomicrobium spinosum; 9.376980222 9.308712314 9.002183934 8.692704486 8.895248179 9.090111746 8.772865924 9.228765851 9.038812474 9.28082387 8.948270338 218132487 obgE Stress Radiation stress Bacteroides pectinophilus ATCC 43243 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides pectinophilus; 8.480983494 8.789194944 8.529065729 8.369167115 8.200324021 8.319529263 8.621289994 8.427078623 8.577914284 8.540757631 8.198653445 112280450 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.099488449 7.963900793 7.846129864 7.824936516 7.51506995 7.637509519 7.64875016 7.749065272 255712475 ahpC Stress Oxygen stress Lachancea thermotolerans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Lachancea;species:Lachancea thermotolerans; 8.128472088 8.244007794 8.059130948 7.996226683 8.284269827 7.665537559 8.167077175 7.915422556 8.202521671 7.93402843 7.843997812 116121973 MATE_antibiotic Antibiotic resistance transporter Leptospira borgpetersenii serovar Hardjo-bovis L550 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira borgpetersenii; 7.19835791 7.247599623 7.601132015 6.494475612 7.415313917 6.970722408 7.139084852 7.323204597 110006576 mcrA Carbon cycling Methane Methane production uncultured euryarchaeote superkingdom:Archaea;phylum:Euryarchaeota; 7.86137931 8.039812555 8.066744949 8.18688654 8.124580382 8.194709442 8.398223703 8.145426848 7.969829485 126619827 sigma_24 Stress Sigma factors Cyanothece sp. CCY0110 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.125537584 8.137144392 7.720489453 7.801181429 7.253540197 7.079818519 7.889191829 7.402403551 7.268830572 7.431964779 84691823 phoB Stress Phosphate limitation Parvularcula bermudensis HTCC2503 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 7.999824681 7.979455332 145320473 cellobiase Carbon cycling Carbon degradation Cellulose Enterobacter sp. 638 8.903617214 9.245582319 8.502437523 8.46519255 8.512344375 8.618512466 8.871596519 8.319672023 8.443225405 8.466360909 257097820 endolysin_transglycosylase Bacteria phage LYSIS Xylella phage Xfas53 order:Caudovirales;family:Podoviridae; 7.849516297 7.681061732 7.413478107 7.639454736 7.529785275 7.860401541 7.966044703 7.618131048 28851397 TerZ Metal Resistance Tellurium Pseudomonas syringae pv. tomato str. DC3000 7.821444025 7.970676969 7.937147716 7.909194683 8.13575087 7.945065471 8.140906113 7.935542369 7.902824303 73763118 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.463099931 8.737389869 8.243692582 7.952841427 7.689402342 7.981531302 8.262220174 8.27106774 8.344960596 8.245577195 8.119880926 124259836 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 8.176856595 8.078160736 7.11063978 7.809932447 7.741305813 7.94393157 6.701985468 7.965027562 7.518565527 7.377830308 212704621 katA Stress Oxygen stress Desulfovibrio piger ATCC 29098 8.39048148 7.842719899 7.492556126 7.604122375 7.514511547 7.660691095 7.294150515 7.214561664 7.598696717 228307022 phoA Stress Phosphate limitation Porphyromonas uenonis 60-3 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas;species:Porphyromonas uenonis; 7.979558159 7.744950936 7.483526794 7.364599116 8.273827737 7.803852985 225375869 cda Carbon cycling Carbon degradation Starch Roseburia inulinivorans DSM 16841 8.564976316 8.810695079 7.961353113 8.16122684 7.800039534 7.999510914 7.838136065 7.838855599 7.83181188 7.678865779 8.017898568 183598180 cydA Stress Oxygen limitation Providencia stuartii ATCC 25827 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia stuartii; 7.961218808 7.954442139 7.300684887 7.008956313 78218913 mer Metal Resistance Mercury Desulfovibrio desulfuricans G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 7.306893552 7.483820167 7.652380694 7.081485688 7.271188083 7.408417309 7.875973131 186473930 ChrA Metal Resistance Chromium Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.117774013 8.093303929 7.738281159 8.17405329 8.278025915 8.05811757 8.174294089 8.015865891 7.838985992 209499456 pmdAB Organic Remediation Aromatics Others Burkholderia sp. H160 8.424418143 7.899982391 8.141203636 7.938391003 8.481747951 8.551466719 8.1893694 8.548058527 8.01616011 8.026167174 8.119724233 256393792 endochitinase Carbon cycling Carbon degradation Chitin Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 7.53945824 7.686981866 7.425944892 7.425338269 7.501465795 8.136770973 7.54772037 7.393284282 7.607343747 261835785 sigma_24 Stress Sigma factors Halothiobacillus neapolitanus c2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Halothiobacillaceae;genus:Halothiobacillus;species:Halothiobacillus neapolitanus; 8.03599006 8.162950266 7.380192365 7.581301344 7.736034303 7.620301808 7.142280283 7.860975151 7.606450286 7.468963429 7.724196325 151361772 TerZ Metal Resistance Tellurium Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 7.859792818 8.148945032 7.376732603 7.334769184 7.014373135 6.693155181 212530228 ara_fungi Carbon cycling Carbon degradation Hemicellulose Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 8.393834275 8.286447126 7.872608759 7.878405054 7.909607931 7.555724553 7.309281408 7.6926127 7.495522607 8.077294269 154252026 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 8.677555246 8.595453049 8.228849523 8.601879412 8.855951137 9.05633031 8.678761936 8.268923534 8.50634462 148474824 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.645624223 7.24425801 7.563230162 7.086721155 7.525436449 7.334449332 7.846743157 133778514 endochitinase Carbon cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 8.184330339 8.199517226 8.337149132 8.207089424 8.140597344 7.969207584 8.383509822 8.395111383 8.305006658 8.226850678 7.849869707 146409439 nosZ Nitrogen Denitrification Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.253619363 7.538264939 7.942176408 8.110643614 7.596562501 7.752132875 7.432961656 7.569986008 7.505366583 161729073 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 8.70467108 8.839177526 8.066722089 8.210134397 8.104271413 7.772312638 7.787485667 7.848478677 7.997206467 8.135535482 208605292 hzo Nitrogen Anammox Candidatus Brocadia sp. enrichment culture clone HZO4 8.846499881 8.304140481 8.055014737 8.298580177 8.670671963 8.898639959 8.366269902 6.940120442 8.153511323 8.249519871 8.47178909 78610951 proV Stress Osmotic stress Lactobacillus sakei subsp. sakei 23K superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus sakei; 7.965099068 8.486206375 7.416416721 7.23616338 7.529128583 7.404042826 7.166420991 7.959476145 7.179871828 7.284449293 7.441477096 239910210 nplT Carbon cycling Carbon degradation Starch Thermococcus gammatolerans EJ3 7.933215442 8.2973186 7.478121034 7.522216326 7.460668593 7.270954091 7.044615105 7.479628347 7.655534365 7.493480627 7.212384585 212691094 mannanase Carbon cycling Carbon degradation Hemicellulose Bacteroides dorei DSM 17855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides dorei; 8.508218924 8.537844135 8.768891748 8.584751191 8.541053873 8.351246197 8.595470767 8.368875996 8.561604653 8.407396648 8.089240475 167573869 B_lactamase_C Antibiotic resistance Beta-lactamases Burkholderia oklahomensis C6786 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia oklahomensis; 7.311714941 7.482797363 7.355388838 156451608 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 7.846981002 7.455305301 7.397622867 7.579230398 7.610286501 7.707100647 7.487956435 87281388 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.972977663 8.301329274 7.624514873 7.738778295 8.264197162 7.1357435 7.6345993 7.516993712 7.740870166 70930913 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.242439952 8.375796016 7.861576142 7.529670733 7.515245112 7.591891104 7.318558534 8.106044587 7.418525248 7.40405788 7.656897507 110833824 silC Metal Resistance Silver Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 7.132437597 7.251305523 6.964886188 6.872895383 7.624491801 7.067590643 7.109162829 197103544 linC Organic Remediation Pesticides related compound Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 7.231621539 7.394604024 7.702625452 7.631680365 7.080366143 7.895591489 7.516788832 7.170595735 7.757384478 209401712 narG Nitrogen Denitrification uncultured bacterium 8.023720026 7.843388984 7.629696111 7.560809845 7.657726295 7.83655849 7.42439031 7.796922142 7.596564368 7.411266 7.308415691 237785217 SMR_antibiotics Antibiotic resistance transporter Corynebacterium kroppenstedtii DSM 44385 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium kroppenstedtii; 7.00963218 7.163619736 7.383289413 7.050586929 6.782185279 7.435902377 7.069659933 7.464198196 71908747 sox Sulphur Sulphur oxidation Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 8.190438024 8.282010976 7.880589614 8.003832674 7.628576725 7.737594287 7.710661321 7.97865219 7.852159935 7.876827535 7.91932767 85117384 ZntA Metal Resistance Zinc Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 8.214456719 8.387143712 7.934883324 8.043308327 8.358318345 7.865765482 8.105230466 8.375902687 8.098938117 8.079585544 8.071376498 42525527 CopA Metal Resistance Copper Treponema denticola ATCC 35405 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema denticola; 8.20466902 8.32076347 7.575983984 7.512907891 7.788082684 7.697380203 6.793672374 7.888197804 7.504013341 7.714333595 7.662248592 256758829 glnA Stress Nitrogen limitation Thiomonas intermedia K12 8.028190998 8.017084634 8.00131246 7.564074732 7.967682738 8.036906613 7.647879237 7.761219977 7.568210417 197704845 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 8.29627936 8.168507245 8.011077725 7.732938547 8.080493276 8.280900123 8.1247309 8.370030878 7.936447669 7.862819106 7.736249571 224802934 pstC Stress Phosphate limitation Opitutaceae bacterium TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 7.910374452 7.920870521 7.644042577 7.551810115 7.781785559 7.629106659 7.698075344 7.550072544 119386204 pcaG Organic Remediation Aromatics Other aromatics Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.507782503 8.260159687 7.768661691 8.317840266 8.623767035 8.779279082 8.453897832 8.775770099 8.173387128 8.393680757 8.354295613 21221174 alkK Organic Remediation Others Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 7.87272154 8.189527463 8.309432742 8.399596315 8.112077124 8.274430591 8.305967612 8.31481909 8.257739717 8.064038784 152981660 ChrA Metal Resistance Chromium Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 8.079973227 8.213283676 7.338687708 7.210523777 7.422152699 7.742270111 6.992952862 7.051942692 6.934404554 7.461995779 126665532 linB Organic Remediation Pesticides related compound Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 7.362295888 7.568506442 7.669247601 7.639726223 7.098023671 7.833499552 7.659817581 7.466669214 8.139596417 91783085 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.487877477 7.997790101 8.682188639 8.560213264 8.539407504 8.656660773 8.249506581 8.210080765 8.058240439 52004242 pstB Stress Phosphate limitation Bacillus licheniformis ATCC 14580 7.873429191 8.066292196 7.322702104 7.180212836 7.363457247 6.651515939 7.574310816 7.045931809 7.033153133 7.424523568 91682379 fnr Stress Oxygen stress Rhodopseudomonas palustris BisB5 7.403218469 7.437436186 7.433249521 7.913009068 7.609180233 7.530464804 7.480801704 7.573321088 118439286 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 8.15100016 8.111360692 7.536409049 7.219730753 7.30018376 7.129953284 6.976849741 7.558487748 7.222044531 7.143085038 283782484 sigma_24 Stress Sigma factors Pirellula staleyi DSM 6068 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Pirellula;species:Pirellula staleyi; 7.855703841 7.787509942 7.778775884 7.105763277 7.60186008 7.692473931 7.478823955 7.575496424 7.38199643 254444955 cda Carbon cycling Carbon degradation Starch Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 8.186655658 8.178210389 8.70424408 8.551849551 8.279320432 8.313845869 8.03078828 8.529796514 7.887861306 8.125290192 7.809770342 115255013 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.470834945 8.582968302 8.163824711 7.780180766 8.64194575 8.291255689 8.768959505 8.634326949 8.680400479 187476763 TerC Metal Resistance Tellurium Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 8.450850595 8.359230007 8.562657062 8.361023337 8.509152173 8.687232824 8.052263729 8.291789258 209517141 nagG Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.347541681 7.086201598 7.504687597 7.303333426 7.016609851 7.70071678 156866618 tutFDG Organic Remediation Aromatics BTEX and related aromatics Clostridium leptum DSM 753 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 8.287927183 8.176762059 8.071038295 8.083456824 8.15086685 7.855537568 8.315804969 7.897956757 8.473450839 8.401310861 7.783131002 36786680 grpE Stress Heat shock Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 7.316703772 7.379483503 7.249735199 7.243170228 7.434377036 7.786485501 7.591645675 146400956 pimF Organic Remediation Aromatics Aromatic carboxylic acid Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 8.200819676 8.121888832 7.651025689 7.473030126 7.908454284 7.722243036 7.144632271 8.091938126 7.322233656 7.457753957 7.880226933 16413366 cellobiase Carbon cycling Carbon degradation Cellulose Listeria innocua superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria; 7.955073823 7.960434109 7.241580697 7.056266595 94422964 B_lactamase_A Antibiotic resistance Beta-lactamases Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.447458615 8.423908468 8.313140724 8.028347482 7.982673971 8.285883707 8.213235404 8.412579779 8.000184136 7.972561003 8.08699688 118424461 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.945618192 7.932788072 7.719878525 7.926102539 8.056533469 7.987484125 7.755785728 7.613313283 7.537215277 229377925 pstA Stress Phosphate limitation Oxalobacter formigenes HOxBLS 7.746999613 7.850445506 7.669057927 7.573307778 8.046461566 8.142758312 7.82665831 7.588428735 7.614900295 170116477 phenol_oxidase Carbon cycling Carbon degradation Lignin Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 7.808641104 7.479882642 7.561989276 7.516919794 7.384651393 7.663693608 7.313171813 7.349140545 7.259015397 126347919 chnB Organic Remediation Other Hydrocarbons Streptomyces ambofaciens ATCC 23877 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ambofaciens; 7.338764578 7.717874752 8.040061309 8.059762874 7.688309442 7.98801719 7.876665747 7.855151882 7.939523405 49238207 pnbA Organic Remediation Aromatics Nitoaromatics Bartonella henselae str. Houston-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella henselae; 7.041464112 7.550793293 7.951445891 7.797815774 7.630931911 123441613 pimF Organic Remediation Aromatics Aromatic carboxylic acid Yersinia enterocolitica subsp. enterocolitica 8081 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 6.925651881 7.305217658 7.143092806 6.951696412 7.679555402 7.272537476 7.297065017 7.627239888 145318836 narH Stress Oxygen limitation Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 8.209478324 8.077917584 7.957965206 8.110361543 7.982589077 7.866018367 8.450212281 8.206182838 8.409395973 8.241287614 8.188994385 167037093 amyA Carbon cycling Carbon degradation Starch Thermoanaerobacter pseudethanolicus ATCC 33223 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Thermoanaerobacter;species:Thermoanaerobacter pseudethanolicus; 7.936396821 8.237645672 7.51176281 7.387853957 6.754453076 7.348717004 198276889 sigma_24 Stress Sigma factors Bacteroides plebeius DSM 17135 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides plebeius; 7.795887837 7.490146607 7.4389674 7.154996304 7.370100941 7.428537171 88819470 hrcA Stress Heat shock Pseudoalteromonas tunicata D2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas tunicata; 8.14972088 8.18017232 8.39199265 8.175635178 7.941498958 8.098467953 8.089487266 83643155 pulA Carbon cycling Carbon degradation Starch Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 8.120627527 8.22589218 8.009461089 7.858440078 7.999968469 8.309066102 7.809499901 8.026757625 7.958883344 7.596495228 41398427 CadA Metal Resistance Cadmium Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 7.989593686 8.182992315 8.172751358 8.019992385 7.889507896 8.014540019 8.473249835 8.541029176 8.446749414 8.18009687 8.465683077 144944757 ArsC Metal Resistance Arsenic Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 7.714894532 7.341417099 8.159922885 8.222905543 7.822799174 8.002279556 7.855033309 8.119928034 8.226301753 229917631 fnr Stress Oxygen stress Exiguobacterium sp. AT1b 7.379548458 7.193858879 6.982064056 7.44834386 7.363654733 113890156 ahpF Stress Oxygen stress Shewanella sp. MR-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 7.68608491 7.91376552 7.532062159 7.739844537 7.37402848 7.693851162 7.491372398 7.536323686 114307512 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Nitrosomonas eutropha C71 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas eutropha; 7.63858177 7.897971535 91783064 alkK Organic Remediation Others Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.392670416 8.205242113 8.298367755 8.82411704 8.413095493 8.598036436 8.401195914 8.47632203 237685927 oxyR Stress Oxygen stress Teredinibacter turnerae T7901 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 7.64574517 7.358532716 7.609774959 7.968222967 7.223854834 8.070391837 7.525800648 7.817504453 7.465973191 1903327 pimF Organic Remediation Aromatics Aromatic carboxylic acid Thermoanaerobacterium thermosaccharolyticum superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Thermoanaerobacterium; 8.128970308 8.036189753 7.577132691 7.424168264 6.981918156 7.025248329 7.741783694 6.906990796 6.96815998 192808507 atzC Organic Remediation Herbicides related compound Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.983183223 8.621969718 7.304460631 7.838224072 7.526538129 7.269063793 8.065884626 7.290752531 7.137255654 7.361730453 189194071 lip Carbon cycling Carbon degradation Lignin Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7.865501866 8.036325063 7.798422658 8.004483988 8.122600595 8.078385741 7.782855556 7.915479303 78192574 fnr Stress Oxygen stress Geobacter metallireducens GS-15 8.296633255 8.400535612 7.601061674 7.451552015 7.951866087 7.955235842 7.260913122 8.02834605 7.413716712 7.654445594 7.738101881 3057081 nosZ Nitrogen Denitrification uncultured eubacterium S321195C superkingdom:Bacteria;phylum:Proteobacteria; 7.936429827 7.869726356 7.649994738 7.469183618 8.382079383 7.960511957 7.930522805 7.863598006 7.376240201 119952422 TerC Metal Resistance Tellurium Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 8.010541961 8.106554064 8.481836665 8.398359103 8.536193928 8.398814708 8.451997513 8.599347234 41406674 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 8.259942121 8.104201567 7.601536108 8.326543021 8.498036074 8.554127639 8.698125249 8.290227752 8.385318449 85823679 pcaG Organic Remediation Aromatics Other aromatics Roseobacter sp. MED193 7.31591216 7.240710694 6.730535121 7.364934785 7.262209532 6.893098472 7.001107027 172087778 sigma_32 Stress Sigma factors Vibrio fischeri ES114 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Vibrio fischeri; 7.237117266 7.244824396 7.235259552 33598526 cydB Stress Oxygen limitation Bordetella parapertussis 12822 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella parapertussis; 7.777724987 7.97127413 8.026524658 7.614563622 8.064522659 7.894652301 7.753420535 8.112527814 7.822859696 119483592 pheA Organic Remediation Aromatics Other aromatics Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 7.935708173 7.934151403 7.46132394 7.502323089 7.882327449 7.824246958 7.77449404 8.057409331 7.631299247 7.797326784 7.796868271 219722192 B_lactamase_C Antibiotic resistance Beta-lactamases Stenotrophomonas sp. SKA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 8.171352836 8.434672213 7.281368281 7.724772472 7.706636212 7.024853702 8.226315814 7.569704705 7.534036269 169857040 nagG Organic Remediation Aromatics Aromatic carboxylic acid Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 8.116772825 8.307757831 7.599408085 7.650806109 7.648252117 7.420331312 7.97160263 7.965990166 7.792990929 7.700394771 156740741 sigma_24 Stress Sigma factors Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 7.600446022 7.436025281 7.081451872 6.65331119 7.250735937 120606791 pstA Stress Phosphate limitation Acidovorax sp. JS42 7.681667484 7.674099166 7.284221334 6.966675681 7.448441933 7.496860147 7.362471776 7.361910742 7.483435478 282888990 obgE Stress Radiation stress Burkholderia sp. CCGE1001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.413760306 8.334741295 7.77464312 7.688455908 8.000734114 7.858738712 6.906356262 7.674084027 8.005864121 146283847 cytochrome Energy process Energy process Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 8.275776176 7.830076884 7.733482104 8.014232432 8.227135985 7.920728002 8.086935011 7.665561602 163850632 iro virulence Methylobacterium extorquens PA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 8.615303054 8.320572663 7.990995363 8.425825838 8.050623502 8.445034454 8.126709562 8.507901666 8.54100103 8.418587257 26990073 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.115047009 8.123320939 7.277351741 7.476547448 7.598063783 7.559816623 7.224625017 7.496350586 7.654599379 121634083 gyrB other category gyrB Neisseria meningitidis FAM18 7.716375148 8.358021638 7.748396929 7.508888454 7.390134376 7.130668937 7.639796838 7.888058075 7.603364926 7.609051371 86739971 hrcA Stress Heat shock Frankia sp. CcI3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 7.569234749 7.932243484 7.65126872 7.56398103 7.67910941 7.774095718 7.941619735 7.791210245 7.691272657 124260874 chnB Organic Remediation Other Hydrocarbons Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 7.18928155 7.621313804 7.819039658 8.086048149 7.702669899 8.052305448 7.392136165 7.626722469 119957908 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 7.894060754 8.00393478 7.71561757 8.076358629 7.724699403 7.981605041 7.984509095 8.17885851 225075558 ppk Phosphorus Phosphorus utilization Neisseria flavescens NRL30031/H210 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria flavescens; 7.851873093 8.044125153 8.262139054 7.889889206 7.945875988 8.098923792 8.578607156 8.402276858 8.250602212 8.256735414 8.354893563 147919667 pstB Stress Phosphate limitation uncultured methanogenic archaeon RC-I 7.19388302 7.426100587 7.334800179 7.168607645 7.167305158 7.262549754 7.05227561 7.768280009 212686597 ppx Phosphorus Phosphorus utilization Providencia alcalifaciens DSM 30120 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 8.016606176 7.948151789 6.835565239 7.484131565 7.282452651 7.135609168 7.57554122 39996884 cytochrome Energy process Energy process Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 7.860061183 7.658393749 6.99612197 7.07235706 7.809417879 7.413838819 7.392167609 7.144708545 240103494 pstB Stress Phosphate limitation Thermococcus gammatolerans EJ3 8.34939376 7.35924166 7.881366037 7.652838611 8.520334161 19915175 merP Metal Resistance Mercury Methanosarcina acetivorans C2A superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina acetivorans; 6.772882786 6.929855588 226089199 sigma_70 Stress Sigma factors Gemmatimonas aurantiaca T-27 superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 7.58061426 7.494876125 7.984807348 8.060048213 7.758699327 8.187915461 7.891908395 7.586043101 7.967487387 262085790 katE Stress Oxygen stress Gordonia bronchialis DSM 43247 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 7.692705552 7.856476046 7.79660771 7.564332375 8.015856929 8.211741849 8.142803236 7.978104492 7.817440158 55791888 catechol_B Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 8.62084592 8.361627418 8.337352854 8.900339803 8.42145547 8.795648709 8.917130529 8.692732123 4160592 rubisco Carbon cycling Carbon fixation Bradyrhizobium japonicum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.940410442 8.089181607 8.016408823 7.938932928 8.222746827 7.995934055 8.081572562 8.404871282 8.166927444 8.272707207 7.549318475 160941704 atzA Organic Remediation Herbicides related compound Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 8.576567753 8.233458368 7.51599019 8.374194354 8.671843599 8.808319682 8.290608853 8.56851446 8.526846618 8.463014507 8.623743035 22855025 integrase_serine Bacteria phage REPLICATION Bacillus phage phi105 order:Caudovirales;family:Siphoviridae;genus:Lambda-like viruses; 7.569570751 7.849211249 7.62960202 7.227138094 7.756454831 7.645773984 7.492383662 7.575378639 21238925 gyrB other category gyrB Bogoriella caseolytica superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Bogoriellaceae;genus:Bogoriella; 7.700624805 7.795228157 7.958171084 7.178707042 7.762303357 7.764481445 7.536340922 7.619617688 7.856941308 256560559 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Brachybacterium faecium DSM 4810 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermabacteraceae;genus:Brachybacterium;species:Brachybacterium faecium; 7.392763173 7.688629836 7.93645397 7.58748232 7.775511932 7.223800597 7.571442381 7.573543346 109452392 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6.727486654 7.603166498 6.966518352 6.989887803 190572340 pimF Organic Remediation Aromatics Aromatic carboxylic acid Stenotrophomonas maltophilia K279a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 8.401115391 8.545218963 8.170296871 7.76540344 8.258381465 8.314372649 8.42204361 8.278702988 146296650 APS_AprA Sulphur adenylylsulfate reductase Caldicellulosiruptor saccharolyticus DSM 8903 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Caldicellulosiruptor;species:Caldicellulosiruptor saccharolyticus; 7.500987798 7.307708919 7.656161947 7.898364533 7.388789387 7.800396866 7.753103385 7.421802034 7.441593295 159900740 obgE Stress Radiation stress Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 8.050933983 8.164696839 7.462728257 7.688769993 8.322220303 7.971190282 7.712597895 7.585246622 7.806292563 85715657 ppx Phosphorus Phosphorus utilization Nitrobacter sp. Nb-311A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter; 8.218813827 8.285152522 8.256123781 7.70644935 8.491244608 8.151131507 8.22252821 8.024320138 8.40048496 209401672 narG Nitrogen Denitrification uncultured bacterium 8.182672942 8.023738556 7.646153439 8.070291712 8.13970574 8.15623585 7.93511369 7.77787149 7.563745576 205364094 AceB Carbon cycling Carbon degradation others Phaeosphaeria nodorum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria; 7.658096471 7.664422323 8.137426012 8.233522515 7.680907786 7.654416954 7.767564529 8.084240138 116073969 hrcA Stress Heat shock Synechococcus sp. RS9916 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.15627725 8.593182824 8.546909423 9.00495714 7.837852815 8.809809862 7.85133017 8.541014068 8.12988705 145702916 H_transporting_two_sector_ATPase Bioleaching other category Metallosphaera sedula DSM 5348 8.071230782 8.196645588 7.268676631 7.793625997 7.487698094 7.241852161 7.296220409 7.605415679 7.279166692 7.199624364 7.631830329 15140733 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 8.326418907 8.349297589 8.256647789 8.287683654 7.520357926 8.309720407 8.693400139 8.798812847 8.7665524 8.601480128 119713347 gyrB other category gyrB uncultured marine bacterium EB80_02D08 superkingdom:Bacteria; 7.776490129 8.024119991 6.812558416 7.232599484 6.88761875 7.353264772 125973008 nifH Nitrogen Nitrogen fixation Clostridium thermocellum ATCC 27405 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 6.96862399 7.235618867 29609340 sigma_70 Stress Sigma factors Streptomyces avermitilis MA-4680 9.176191382 9.090327219 9.393624805 9.19240857 9.010832441 91688346 nitA Organic Remediation Aromatics Other aromatics Burkholderia xenovorans LB400 8.042289039 8.356676252 7.967633626 7.871131322 7.876772691 7.714474126 7.984022041 7.694224351 7.989404707 8.305311769 8.23760574 257456405 obgE Stress Radiation stress Treponema vincentii ATCC 35580 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema vincentii; 7.998838036 8.161926967 7.444202354 7.552402897 8.080752569 8.14353748 7.593433838 8.368583054 7.514005086 7.483983411 7.780026225 15613568 alkH Organic Remediation Other Hydrocarbons Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 7.022349641 7.531825703 29610583 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 7.830307206 7.609001083 7.805431776 8.041335357 8.188842962 7.690419924 7.817676841 16800713 ahpC Stress Oxygen stress Listeria innocua Clip11262 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria innocua; 8.726769744 8.953529564 8.119168184 8.061217075 7.907492391 7.946366982 7.548185723 7.610877756 7.66402841 7.989862023 218758427 nrfA Nitrogen Dissimilatory N reduction Desulfovibrio vulgaris str. 'Miyazaki F' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 8.98818448 8.968612624 8.083068879 8.369470778 8.895974966 9.380539399 8.613987119 9.35706954 8.672730589 8.373882101 8.595433905 157314387 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Thermotoga lettingae TMO superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga;species:Thermotoga lettingae; 8.190559806 8.066097929 7.730344495 7.556127534 7.424800568 7.639765319 7.745653907 7.688902282 7.591973827 7.492172808 7.537695995 226318316 fnr Stress Oxygen stress Deinococcus deserti VCD115 7.425257389 7.242204419 7.120403781 7.172101007 6.771942628 7.443964169 7.108273264 7.257922964 145701355 cytochrome_c Bioleaching Electron transport Metallosphaera sedula DSM 5348 8.095049735 8.170726115 7.255822674 7.35889233 7.599223992 7.86829151 7.149832806 7.290882548 7.246776165 7.309615646 158110555 linB Organic Remediation Pesticides related compound Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.196890309 8.406644477 7.88671617 8.047586413 8.334895979 8.117708477 8.706440544 7.945474415 7.969271676 8.008349634 134080861 katE Stress Oxygen stress Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 8.529006177 8.678087026 8.319625336 8.109799606 8.120474653 8.237431702 8.375675507 8.256458504 8.40992136 8.30849998 8.489112364 189346607 SMR_antibiotics Antibiotic resistance transporter Chlorobium limicola DSM 245 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium limicola; 7.9865889 8.273237146 7.371662905 7.490785211 7.688405806 7.856712998 7.530558106 8.215591103 7.199793491 7.322439008 7.308327276 118569258 inv virulence invasion Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 7.371328091 7.667948735 7.915853779 7.6128821 7.531078235 7.532619651 7.496987234 99082461 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.672568139 7.548722777 7.856788658 7.927227233 7.146025519 8.052456609 7.274727348 7.557072981 7.553492609 56314109 ChrA Metal Resistance Chromium Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 8.240330062 8.396783457 7.978525063 7.993297738 8.223453281 8.470633773 8.100639883 8.266443035 8.196717632 8.092204273 7.897365458 221532746 nhh Organic Remediation Aromatics Nitoaromatics Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 7.334429115 7.482682123 7.667948259 7.540350712 7.636586689 7.921533544 7.72968066 7.714293861 7.849431935 114538160 aclB Carbon cycling Carbon fixation Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 8.105169743 8.236138943 8.080945329 7.902689475 7.852706934 7.719856557 8.11602045 8.105220654 8.198554462 8.176117441 8.251425712 74381909 mmoX Carbon cycling Methane Methane oxidation Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 8.094405328 8.247963215 7.868288045 8.518802011 8.112662317 8.358608579 8.222811426 206686504 phn Organic Remediation Herbicides related compound Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.300308426 7.410256497 7.669899038 7.334720727 7.038835828 7.879059453 6.805984318 7.366021301 13882553 TerC Metal Resistance Tellurium Mycobacterium tuberculosis CDC1551 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 7.293960585 7.019263679 7.090782936 6.896828668 6.948187357 108463262 hly virulence hemolysin Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 8.541778039 8.444212732 8.184168424 8.136995857 8.153458443 8.209264361 8.326702869 8.285217071 8.624269782 8.445742973 8.388687549 227901433 pstB Stress Phosphate limitation Finegoldia magna ATCC 53516 8.140833762 8.355493862 7.064011567 7.237102944 6.955879158 7.370529444 227181071 glnA Stress Nitrogen limitation Corynebacterium glucuronolyticum ATCC 51866 8.451240405 8.211829291 8.045106168 8.226946396 8.39315674 7.862491799 8.427882646 7.664356535 7.828127687 8.290218428 269105195 hly virulence hemolysin Photobacterium damselae subsp. damselae CIP 102761 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium damselae; 6.916985786 7.463405431 7.702859296 6.990133444 7.880886273 7.01942367 7.140381819 7.390863393 182633695 gyrB other category gyrB Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 7.235187421 7.3482498 7.371976255 7.111261983 159044908 ureC Nitrogen Ammonification Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 7.822554775 7.932591531 7.828216553 7.862047912 8.097637297 7.969528489 7.510894703 7.954583241 21224317 nitro Organic Remediation Others Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 7.759511041 7.787437829 7.727068156 7.944905177 8.11398428 7.803351345 8.2048365 7.862677812 8.008513851 218757247 grpE Stress Heat shock Desulfovibrio vulgaris str. 'Miyazaki F' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 8.335279968 8.239564031 8.08481684 7.931622317 8.165263857 7.847747148 8.231741847 8.228588038 8.250245847 111222897 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 8.355763915 8.56354727 7.667015728 8.150641323 8.287982155 8.630626026 7.943588882 8.706384302 7.972396337 8.136658569 8.15581255 57233796 arsM Metal Resistance Arsenic Dehalococcoides ethenogenes 195 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides;species:Dehalococcoides ethenogenes; 8.321788322 8.217723099 7.710809255 7.655989967 7.734776997 7.586046205 8.21223668 7.539373723 7.525329321 7.555820649 258561990 srt virulence surface protein Corynebacterium genitalium ATCC 33030 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium genitalium; 7.157773451 7.068400035 7.279920132 7.461208958 7.237587602 7.797960066 6.929672899 7.120037824 7.125623939 153954423 APS_AprA Sulphur adenylylsulfate reductase Clostridium kluyveri DSM 555 8.144861756 8.556687656 7.627396173 7.57725855 7.605732452 7.289874868 7.49484241 7.699191647 17742573 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.338898665 8.006149552 7.996476904 8.015888659 7.022957275 8.056998571 7.205418322 7.654783022 7.749713347 118744030 silC Metal Resistance Silver Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 7.801590834 7.953726642 7.779505495 7.610926928 8.009523319 8.169705707 8.256111893 8.091901292 7.982289266 260778199 iuc virulence aerobactin Vibrio coralliilyticus ATCC BAA-450 7.827115197 7.765655939 7.588061583 7.532328879 7.654896344 7.907760788 7.997010187 7.965882671 7.957804131 68055013 CopA Metal Resistance Copper Exiguobacterium sibiricum 255-15 8.218053544 8.554409177 8.498641966 8.331492099 7.974113003 8.60153252 8.518810066 8.442625196 8.411622936 8.310753871 8.207142496 82801435 alkB Organic Remediation Other Hydrocarbons bacterium alkW69 superkingdom:Bacteria; 7.470208126 7.532506182 7.79930606 7.766961219 7.62099254 7.409750751 7.496387644 7.402444172 223689903 narI Stress Oxygen limitation Desulfobacterium autotrophicum HRM2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium;species:Desulfobacterium autotrophicum; 7.219659547 7.603892234 7.415099022 7.098345881 6.948072455 7.687696404 7.345103609 7.169168978 17134404 gyrB other category gyrB Nostoc sp. PCC 7120 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc; 8.518412138 7.447332588 7.225986558 7.160320174 7.485292621 218147672 merP Metal Resistance Mercury Diaphorobacter sp. TPSY superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax ebreus; 8.108794933 8.271951841 7.078575318 7.20567708 6.878631088 7.878262225 7.069043268 7.541413627 184203292 catB Organic Remediation Aromatics BTEX and related aromatics bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 9.190471874 8.698924563 8.001191417 8.264904657 8.372697772 8.177767925 7.738114205 8.49243466 8.053954349 8.015586646 7.973379712 52078808 TerZ Metal Resistance Tellurium Bacillus licheniformis ATCC 14580 7.85563788 8.018084426 7.617519662 7.280451626 7.304120735 6.950933523 7.013128152 7.481048694 119116584 opuE Stress Osmotic stress Photobacterium phosphoreum superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium; 8.081750165 8.532886426 8.198619705 7.99078964 7.993644611 7.696030385 7.76914885 8.16890112 7.93344479 7.807102181 8.07599334 197706623 nagG Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 7.232425045 7.531358242 7.556366817 7.848765485 7.671415272 7.37991917 8.091813093 86280536 ppx Phosphorus Phosphorus utilization Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.889820755 7.884365013 7.52586 7.685617886 8.00508466 7.730879302 7.532452858 7.763143009 1389642 bphD Organic Remediation Aromatics Polycyclic aromatics Pseudomonas pseudoalcaligenes superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 6.894795941 6.944889367 260886574 grpE Stress Heat shock Selenomonas sputigena ATCC 35185 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sputigena; 8.183255274 8.143086093 7.917888416 7.796484812 7.733057148 7.979257464 7.991463643 8.24701695 8.147028468 8.108363396 7.873950255 152995325 vanA Carbon cycling Carbon degradation Others Marinomonas sp. MWYL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 7.119746475 7.436889656 7.522444051 7.207440828 7.884127107 7.592754889 7.453076101 7.219782475 196190775 CopA Metal Resistance Copper Synechococcus sp. PCC 7335 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.241981167 7.07678703 7.04229336 7.062573882 7.239667434 99030638 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 7.321447601 7.82858636 7.736759464 7.590012184 7.95721516 7.999343603 7.981594374 7.793323625 7.779322655 188572649 mcrA Carbon cycling Methane Methane production uncultured archaeon superkingdom:Archaea; 7.721700632 7.612865748 7.69496279 7.708081359 7.73015218 7.804569733 7.578838843 7.5551996 7.390013472 167461246 arsM Metal Resistance Arsenic Paenibacillus larvae subsp. larvae BRL-230010 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus larvae; 7.503981538 7.365900417 7.07613449 7.449350525 78194587 pchCF Organic Remediation Aromatics BTEX and related aromatics Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 7.466182392 7.390961403 7.057188202 7.38370447 7.432292247 7.324466749 7.647858804 7.602610642 87199130 glnA Stress Nitrogen limitation Novosphingobium aromaticivorans DSM 12444 7.775463263 7.626891005 7.67879177 7.342193783 7.756371134 7.805588725 116072338 sigma_70 Stress Sigma factors Synechococcus sp. BL107 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.565758642 7.447823871 7.481752121 7.353262079 7.507006808 7.784458932 7.229525561 7.235744199 7.174606017 115588271 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas aeruginosa UCBPP-PA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.768356208 8.56638639 8.970262556 8.985836469 8.521936384 8.97718008 8.974170304 8.587498711 8.944587524 8.506888522 219679009 PhaB Organic Remediation Aromatics Aromatic carboxylic acid gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.024499949 8.153097177 8.046215585 8.310687327 8.344679164 7.997282185 8.033850353 8.409129195 8.61919625 90590260 xylanase Carbon cycling Carbon degradation Hemicellulose Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 8.253512558 8.681732553 8.09646846 8.184623117 8.264855806 8.071031275 8.34976332 8.231901565 8.712924272 8.782067318 8.477841026 77378501 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.880413753 7.635203835 8.032279067 7.548781569 7.390431895 126668148 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 7.910000916 8.284512633 7.448271164 7.344073878 7.467325549 7.641154196 7.005791686 8.199076642 7.234865802 7.198951027 7.405488156 84693890 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 7.488239923 7.381977469 7.115791365 7.067748129 7.122612045 7.929487374 7.222044531 7.258933735 7.170893415 94984863 ArsC Metal Resistance Arsenic Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 7.775499188 7.905414081 8.083178186 8.005391608 7.846761076 7.999173331 7.995711586 171278848 ppx Phosphorus Phosphorus utilization Bifidobacterium dentium ATCC 27678 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium dentium; 7.154763874 7.303055565 7.288753518 7.114106022 7.137909954 7.385915439 83770445 linB Organic Remediation Pesticides related compound Aspergillus oryzae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 8.360943434 8.691253122 8.225402473 8.050859854 8.08988458 7.610560295 7.736160459 7.969242729 8.039305871 8.172216378 8.199263047 10173752 pcc Carbon cycling Carbon fixation Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 7.063101466 7.003014272 7.094335394 7.015906143 6.904949493 7.087414121 6.966148133 209883685 gyrB other category gyrB Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 7.507639565 7.493523089 7.374641994 7.263110608 7.229315635 7.490101307 7.546377182 134094343 phoB Stress Phosphate limitation Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 7.313524036 7.112673559 7.336007009 6.873616415 7.237001495 7.422791235 7.330512932 7.503564007 6434744 xylanase Carbon cycling Carbon degradation Hemicellulose Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 7.864732664 7.794872153 8.067077823 8.216955997 7.927044298 8.397987843 7.886519061 7.752021702 8.08005252 225403153 bglP Stress Glucose limitation Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 8.034250302 8.296639991 8.075876063 7.550441766 7.390003656 7.352750057 7.47708065 8.064167184 7.461497976 7.482284211 7.700337958 166897667 bphA Organic Remediation Aromatics Polycyclic aromatics Dyella ginsengisoli 8.056516593 8.22705058 7.540558956 7.781317792 7.78075889 7.736293727 7.53273277 7.924771878 7.460641548 7.667349886 7.742408576 4753675 pstB Stress Phosphate limitation Burkholderia sp. 7.847439578 7.983977883 7.648480301 7.590436616 7.788591375 8.025850012 8.077461416 8.148713469 184194976 mauAB Organic Remediation Herbicides related compound Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.185179494 8.172367639 8.109390551 8.067868754 8.184694497 8.566742786 8.687229243 8.600225874 256377176 SMR_antibiotics Antibiotic resistance transporter Actinosynnema mirum DSM 43827 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinosynnemataceae;genus:Actinosynnema;species:Actinosynnema mirum; 7.9693755 7.722097323 7.352424053 7.423528308 7.998210574 7.869492181 7.733872266 7.515207309 7.620309192 120587337 nahA Organic Remediation Aromatics Polycyclic aromatics Acidovorax avenae subsp. citrulli AAC00-1 7.791330906 7.594128919 7.944901554 7.744120632 7.512133792 7.485605616 7.433149748 7.451249216 187724733 iro virulence Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.268093716 8.266507805 8.154369902 7.947579431 7.70819178 7.961599404 7.905600801 8.41392188 7.945326669 7.741757553 7.812018778 260816008 B_lactamase_C Antibiotic resistance Beta-lactamases Branchiostoma floridae superkingdom:Eukaryota;kingdom:Metazoa;phylum:Chordata;family:Branchiostomidae;genus:Branchiostoma; 8.066300561 8.214400945 7.473739105 7.732793598 7.365969644 7.2594516 7.806277718 7.498230812 7.438481226 7.656342755 227197036 pstB Stress Phosphate limitation Corynebacterium striatum ATCC 6940 7.467560224 7.72079122 8.052985742 7.916384199 8.046394385 8.228257242 8.574493114 8.361563969 262394127 MFS_antibiotic Antibiotic resistance transporter Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.424723443 7.336064272 7.307058736 7.070223014 6.958682847 7.408608257 40253092 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.338730637 8.402535973 7.857481473 7.735228147 7.86644702 7.955976933 7.591566622 8.270641779 7.517689164 7.359739386 7.915350865 117999019 xylJ Organic Remediation Aromatics BTEX and related aromatics Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.428354975 7.507132117 7.724067635 7.682851086 7.283867619 7.965143757 7.632021358 7.179487266 7.431479411 62896437 mer Metal Resistance Mercury Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.205979595 8.28179178 7.674567962 7.548609039 7.694357451 7.49014864 8.149634564 7.485999974 7.718140746 7.656133638 226940382 sigma_24 Stress Sigma factors Laribacter hongkongensis HLHK9 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Laribacter;species:Laribacter hongkongensis; 8.286611631 8.094373434 8.452757405 9.003855327 8.627424849 8.949449498 8.111865679 8.097476387 8.190569046 170721476 proX Stress Osmotic stress Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.373128614 8.05497545 8.558236488 8.637854784 8.41894369 8.646879031 8.290428709 8.139781639 8.141777085 8.219619217 7.810374267 85821599 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Tenacibaculum sp. MED152 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Polaribacter; 7.90168308 7.967734585 7.536240334 7.452185324 7.270272805 7.274859608 7.71599782 7.461162336 7.416698395 21213860 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Hypocrea lixii superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 7.144121606 7.134701313 21673337 sigma_24 Stress Sigma factors Chlorobium tepidum TLS superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 7.986531438 8.203577922 7.359668421 7.175609783 7.481426525 7.349588168 7.235182963 7.062118449 7.751177856 7.556555534 7.338378977 124514869 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 7.648898653 7.791981663 7.610323261 7.566606527 7.746209438 7.432841862 7.661104529 7.374817856 60476330 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.903428132 7.770748877 7.640990295 7.553710067 8.207201372 7.949858949 7.868972328 7.807966397 7.746779445 150036078 sox Sulphur Sulphur oxidation Allochromatium minutissimum superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium; 7.759424966 7.886157361 7.619345085 7.623260182 7.587257427 7.818056932 7.827100272 7.59165129 257811378 srt virulence surface protein Enterococcus casseliflavus EC20 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus casseliflavus; 7.796774841 8.378130891 8.4206052 7.846676629 8.113295783 7.812191421 7.990903874 8.190333866 8.150754797 7.845506218 7.881666792 218462328 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.380161501 7.547762504 7.61993732 7.226403068 7.576078009 151302351 APS_AprA Sulphur adenylylsulfate reductase Desulfotomaculum australicum 7.250531028 7.435213443 7.677185477 7.002737182 7.012776717 7.53240461 78185245 sigma_70 Stress Sigma factors Synechococcus sp. CC9902 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.126157175 8.260298346 7.417607117 7.124197491 7.754224098 7.480126208 7.090195668 7.911056278 7.250785187 7.438949038 7.774003622 83636132 MFS_antibiotic Antibiotic resistance transporter Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 8.452250299 8.351578241 7.544359312 7.663635911 7.864243097 8.019882144 7.752038377 8.04275352 7.822619333 7.735232003 7.710825047 157324590 atzC Organic Remediation Herbicides related compound Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 7.769729352 7.738959625 7.836854716 7.781050356 7.699169456 7.713611891 7.303024539 7.282263531 118172952 bphD Organic Remediation Aromatics Polycyclic aromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 7.810415458 7.955310653 7.384188355 7.347765213 7.40563473 7.908965744 7.217198374 7.318085935 7.458553174 27544678 gyrB other category gyrB Tatlockia maceachernii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Tatlockia; 8.237599271 8.167079927 8.137633271 7.929548838 8.038567793 8.103987586 7.821945747 8.002168445 7.634219071 7.71473085 7.752610211 86167406 fnr Stress Oxygen stress Synechococcus sp. RS9917 8.08596723 8.004561265 7.990945002 7.991590058 8.688501386 8.303125863 8.35580003 8.139892815 8.192707762 154498806 sigma_24 Stress Sigma factors Bacteroides capillosus ATCC 29799 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides capillosus; 7.777261204 7.726297057 7.831809201 7.456421406 7.866760018 8.202394315 8.201833086 222102754 pcpE Organic Remediation Herbicides related compound Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 8.07434411 7.989275949 7.955755571 8.273877863 8.158837909 8.283533169 8.040653776 8.195658612 7.783981689 50428397 tftH Organic Remediation Aromatics Chlorinated aromatics Rhodococcus opacus 9.798632239 9.707086094 8.77707836 9.020758417 8.586093126 8.834933449 8.212318709 8.902952028 8.931346869 8.885414113 8.673691643 70728815 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.889585914 8.013110875 8.332438377 7.67504971 7.922609166 7.918371575 7.742240669 8.109841817 24349751 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Shewanella oneidensis MR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella oneidensis; 8.427637832 8.462815926 8.330892102 8.657916954 8.456749634 8.149654573 8.565689058 8.249966027 8.348312255 8.075620559 8.35960489 114764025 ppx Phosphorus Phosphorus utilization Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.935963203 8.235277049 8.381031725 8.022880132 8.114109857 8.117727645 8.286637716 8.349808031 7.922472512 158332301 fnr Stress Oxygen stress Azorhizobium caulinodans ORS 571 8.028021479 8.158059475 8.643833428 8.543719335 8.316804575 8.269835972 8.359631412 8.466157322 8.248983253 8.242369059 7.771216585 206678282 sox Sulphur Sulphur oxidation Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.691856992 8.671986198 8.203163825 8.451290136 8.403948675 8.241206653 8.342697669 8.268536613 8.655162759 8.471114505 8.127317868 238595351 glx Carbon cycling Carbon degradation Lignin Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 7.598873633 7.3432926 7.68805029 7.937667046 7.525968533 7.674648911 7.373891803 7.548374628 7.618083496 28911901 dmsA Organic Remediation Others Dechloromonas agitata superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas; 7.474947612 7.447399018 7.435518334 6.971245764 7.622043692 7.728509325 7.534897354 7.508011299 7.648017027 255010737 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Bacteroides fragilis 3_1_12 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 7.283635384 7.688449498 7.331843644 7.568389444 7.492860397 7.99540079 7.344708654 7.37470129 7.672038943 210069526 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 8.431627663 8.540362179 8.640647569 8.730787955 8.537652176 8.687070508 8.885064306 8.753397107 8.995732235 8.796031585 8.439778385 88799328 AceA Carbon cycling Carbon degradation others Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 8.256667449 7.815021818 8.15316217 8.39985534 8.26590398 8.33672609 8.25694617 8.22171285 146407056 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.633644223 8.783358177 8.546702 8.171997549 7.985005936 8.3196745 8.2000278 8.299475809 8.431139152 8.134164806 8.158361414 148256857 ArsC Metal Resistance Arsenic Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.792771135 7.616527528 7.665316041 7.211717966 7.552619658 7.697340662 7.37625869 7.831879374 148242459 dnaK Stress Heat shock Synechococcus sp. RCC307 8.285434248 8.115375693 8.131238653 8.033437732 8.24009136 8.445395465 8.284831976 8.339072926 7.875326453 7.916155106 7.949167386 189433030 mannanase Carbon cycling Carbon degradation Hemicellulose Bacteroides coprocola DSM 17136 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides coprocola; 7.971334575 7.992519125 6.678913073 7.171482033 52003739 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 7.678416735 7.500219871 7.890229972 7.79351465 7.98119364 7.870386319 8.02686658 8.003976976 8.377758967 140713641 nasA Nitrogen Assimilatory N reduction uncultured marine bacterium superkingdom:Bacteria; 8.079879047 8.193355205 7.395215724 7.133063216 7.677265641 7.217850424 7.384184517 7.533053288 205372747 ChrA Metal Resistance Chromium Bacillus coahuilensis m4-4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coahuilensis; 8.588630453 8.835758009 8.330579887 8.277363674 8.428769633 7.463092003 7.77940595 7.883752837 8.103528882 8.197910586 76057023 narG Nitrogen Denitrification uncultured bacterium 7.990130773 7.73740881 7.771960316 8.137995187 7.989425178 8.131800805 7.616259963 7.71605059 7.765836754 186472363 bphF1 Organic Remediation Aromatics Polycyclic aromatics Burkholderia phymatum STM815 8.463085688 8.611184559 7.969091263 8.075048084 8.255170231 8.23156819 8.455949995 8.308679306 8.503930157 8.21313164 8.060913831 74058115 TerC Metal Resistance Tellurium Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 7.599049455 7.424404629 7.62813058 7.885776998 7.87637293 7.640165055 7.845837227 7.969490366 157285728 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 8.296182053 8.234061509 8.309183012 7.216888905 7.926412328 7.862267778 8.07862962 8.317025914 7.749200253 91780877 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.48018601 7.248736006 7.268323113 7.296487971 7.07621966 7.456411424 7.129519576 7.276159327 62149228 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.301701096 7.051371701 7.283923855 6.975415338 7.618525781 7.360284436 7.424545063 254432087 ahpC Stress Oxygen stress Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 8.102925222 8.434020143 8.844010349 8.082026465 7.930269988 8.056177561 213924706 Catechol Organic Remediation Aromatics Other aromatics Pseudomonas syringae pv. tomato T1 8.403555541 8.488696436 7.368387893 7.801560899 7.909072323 8.104863628 7.340476622 8.128010267 7.689455301 7.609448595 7.817125895 218781779 alkH Organic Remediation Other Hydrocarbons Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 8.348543976 8.000198748 8.460071165 8.397598193 8.303025763 8.307410709 8.549166444 8.431478209 8.336469179 8.236437529 8.44560806 209966413 pnbA Organic Remediation Aromatics Nitoaromatics Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 7.910860833 8.177820411 8.077260234 8.469175694 8.337788388 8.461848158 8.236305625 8.342480867 8.214376413 139003100 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.465602488 7.508662175 7.720087661 7.479535013 8.166025466 7.75186916 7.809083827 7.891720294 7.71491521 89898777 type_III_secretion virulence secretion Chlamydophila felis Fe/C-56 superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Chlamydiaceae;genus:Chlamydophila;species:Chlamydophila felis; 7.1236531 7.097936564 7.155354955 7.078251042 6.745734635 7.036779238 7.265522424 188989261 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 8.692350499 9.168147393 8.192878686 8.3151066 8.136429957 7.776999666 7.894801853 8.358592883 8.003973238 8.087352377 8.450801161 56419861 glnR Stress Nitrogen limitation Geobacillus kaustophilus HTA426 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus kaustophilus; 7.926700276 8.325461113 7.734014285 7.885499315 7.987081666 7.673144439 7.539374284 8.023484139 7.788378866 7.872143069 7.713458253 254281823 sigma_70 Stress Sigma factors gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.859818856 8.059457592 7.965910913 7.589549153 7.618415367 7.377101408 7.716385032 7.935820766 7.893585817 7.307324834 7.863806693 247537482 pstB Stress Phosphate limitation Dickeya zeae Ech1591 8.635475593 8.528540589 8.602451107 262092492 gyrB other category gyrB Ruegeria sp. HD-28 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 9.795949879 9.503210825 9.077275279 9.028838432 9.191283811 9.608361288 9.331318417 9.718346626 9.246234203 9.003195202 9.326681553 iegcoxL59 CODH Carbon cycling Carbon fixation 8.409036122 8.18983655 8.211873941 8.131786851 8.31537996 8.394905431 8.490558772 8.40404482 8.419924915 8.227971613 8.355670037 241463313 sox Sulphur Sulphur oxidation Allochromatium vinosum DSM 180 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 7.933201056 7.804142571 7.472039674 7.597597421 7.979087143 8.048744626 8.046470007 8.085664739 7.527383346 66572050 vanA Carbon cycling Carbon degradation Others Xanthomonas campestris pv. campestris str. 8004 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 8.191235384 7.734844432 8.477119704 7.588234881 8.269233536 8.089052987 8.235936484 7.631022569 261285158 pstA Stress Phosphate limitation Geobacillus sp. Y412MC10 7.800828335 7.716205821 7.803095593 7.403415911 7.86577512 7.791675158 7.427428956 7.79304822 7.967317511 160893266 ppx Phosphorus Phosphorus utilization Clostridium sp. L2-50 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 7.456167265 7.145679642 7.010783124 115421622 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 8.343637306 8.534079473 8.281101532 8.17252962 7.925238484 7.982731002 8.744246061 8.278945189 8.553987686 8.466550824 8.552086721 58269470 tfdA Organic Remediation Aromatics Chlorinated aromatics Cryptococcus neoformans var. neoformans JEC21 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Tremellomycetes;order:Tremellales;family:Tremellaceae;genus:Filobasidiella;species:Filobasidiella neoformans; 8.277780673 8.116681738 8.589341778 8.545845596 8.380157119 7.733102223 8.433306188 7.693339421 8.271172867 8.245220919 7.965439988 218213908 CopA Metal Resistance Copper Clostridium hylemonae DSM 15053 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 8.462664774 8.558668189 7.95801524 8.027374881 8.164554285 8.422796898 7.658114372 7.642211038 8.298324687 161329002 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Shewanella benthica KT99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella benthica; 7.19912344 7.700423373 7.592779605 7.977378258 7.692308346 7.547762739 7.38787712 7.59146598 7.790237907 260652335 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 8.56628306 8.193731462 8.59094576 8.390702689 8.074990327 8.460800892 8.600785004 8.381219976 8.39393906 8.177806103 8.159666847 126389306 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Acinetobacter baumannii ATCC 17978 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 8.101838487 8.087014999 7.444380747 7.397744576 7.323044735 7.312551124 7.061748151 7.409368412 7.122006535 7.255637377 226098218 MATE_antibiotic Antibiotic resistance transporter Brevibacillus brevis NBRC 100599 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus brevis; 7.639016561 7.324489921 7.428838046 7.404235245 7.187183901 7.643657887 7.152014404 7.283773764 85700461 ureC Nitrogen Ammonification Yersinia enterocolitica superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia; 8.505542867 8.716502109 7.99342072 7.451416944 7.913413495 7.684526211 7.27554962 7.371836139 7.864606877 7.756136151 4512252 lip Carbon cycling Carbon degradation Lignin Pleurotus ostreatus 7.748623032 7.700575977 7.500981129 7.274145711 7.755075364 7.708849589 7.706779206 7.754877839 7.957290723 78355573 dsrA Sulphur sulfite reductase Desulfovibrio desulfuricans G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 7.859114533 8.295755104 7.632997707 7.940534443 7.982710187 7.802645719 7.885500861 8.039476312 8.245634267 8.346482476 8.008960198 225680451 amyA Carbon cycling Carbon degradation Starch Paracoccidioides brasiliensis Pb03 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides;species:Paracoccidioides brasiliensis; 7.977678105 7.918138492 7.684286013 7.402463739 7.960906066 7.434911068 7.683011707 7.57560484 7.829733497 145215925 CopA Metal Resistance Copper Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.143281942 8.370116541 8.022975125 8.086473157 8.379051832 8.090213584 7.646633727 7.930321569 8.108510885 194464658 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.964559065 8.123663365 7.210514992 7.093280516 7.097236918 7.397496818 208009877 sigma_38 Stress Sigma factors Aliivibrio salmonicida LFI1238 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Aliivibrio salmonicida; 7.84259102 8.002547818 6.672164123 7.471078001 118029970 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 8.251322745 7.868478813 7.67025492 7.229805139 7.821366703 7.811392075 7.720546995 7.876683984 150026754 hrcA Stress Heat shock Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 8.1563551 8.438820599 8.326794474 8.039077794 8.00296587 8.196714397 8.169298384 8.186363317 7.891890575 7.86616152 7.971135707 99036196 ahpC Stress Oxygen stress Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.885358086 8.235133223 6.892688178 7.127048274 205373638 gyrB other category gyrB Bacillus coahuilensis m4-4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coahuilensis; 8.09949175 8.014388208 7.322284321 7.551813794 7.697427686 7.427042892 7.841325774 7.712898748 7.743640385 7.806526348 110816943 CDH Carbon cycling Carbon degradation Cellulose Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7.401042009 7.713072032 7.471509186 7.21102173 8.042755945 7.250548418 7.236032704 116694552 ChnA Organic Remediation Other Hydrocarbons Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 7.358784611 7.57529492 7.659832293 7.687830778 7.102376529 8.024577089 7.42241392 7.386799802 7.322524531 186467319 phoB Stress Phosphate limitation Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 7.416497487 7.02294563 150006534 ara Carbon cycling Carbon degradation Hemicellulose Bacteroides vulgatus ATCC 8482 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides vulgatus; 7.721763354 8.115548286 7.314193234 7.066432867 7.237662995 7.456521548 7.258055036 7.357668939 56311858 bco Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 7.654134735 7.702499133 7.572448683 7.990674428 7.897242275 7.769869383 7.63748829 83769926 tftH Organic Remediation Aromatics Chlorinated aromatics Aspergillus oryzae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 7.48454857 7.433238345 7.743720445 7.342725867 7.637711037 7.767646987 7.47740275 7.538001633 7.591236224 170174650 nitA Organic Remediation Aromatics Other aromatics Candidatus Korarchaeum cryptofilum OPF8 superkingdom:Archaea;phylum:Korarchaeota;genus:Candidatus Korarchaeum;species:Candidatus Korarchaeum cryptofilum; 7.256455523 7.062367246 7.61322924 7.627164681 6.678184718 7.049092887 7.138238944 127511282 cytochrome Energy process Energy process Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 7.79165136 8.040012444 7.066758627 7.118518931 6.857483605 7.168411886 50903361 pstB Stress Phosphate limitation Streptococcus pyogenes MGAS10394 6.658528311 6.774468843 194333964 sigma_24 Stress Sigma factors Prosthecochloris aestuarii DSM 271 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Prosthecochloris;species:Prosthecochloris aestuarii; 8.012104088 8.301871674 8.035395997 7.882992913 7.546452921 7.596110376 7.481154151 7.743182885 7.587645801 7.502339158 7.685352226 15127806 pcaG Organic Remediation Aromatics Other aromatics Hydrogenophaga intermedia superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hydrogenophaga; 7.512757155 7.41336943 7.481841065 8.12176914 7.465487403 7.969308134 7.613016433 7.52960714 7.785752776 114775484 czcC Metal Resistance "Cadmium,Cobalt,Zinc" Mariprofundus ferrooxydans PV-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Zetaproteobacteria;order:Mariprofundales;family:Mariprofundaceae;genus:Mariprofundus;species:Mariprofundus ferrooxydans; 8.077113014 8.267588425 7.930523337 7.903808347 8.120297232 8.173149232 7.931972738 7.825887464 7.929399659 8.019825714 7.705268946 188535360 amyA Carbon cycling Carbon degradation Starch Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 7.915941832 7.9992699 7.994981087 7.66872818 8.158369057 8.072565603 7.801489043 7.656768379 7.556536646 119471890 pimF Organic Remediation Aromatics Aromatic carboxylic acid Alteromonadales bacterium TW-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales; 7.272500076 7.358369982 7.046877055 7.754874136 7.046502366 6.707673635 7.156701705 85774789 pimF Organic Remediation Aromatics Aromatic carboxylic acid Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 7.919166833 8.236060242 8.275839845 8.603964865 7.433693372 8.558595564 7.737230567 7.784222757 7.822077463 187727700 silC Metal Resistance Silver Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.362656109 8.341195397 8.415109267 8.742901606 8.510348072 8.376375256 8.918966834 8.547911041 8.794899891 8.564991436 8.466954208 83835663 ZntA Metal Resistance Zinc Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 8.134919627 8.181654765 8.157449327 8.246856053 7.936450033 8.036776528 8.306254591 8.424315263 7.986342197 8.000707489 7.685152363 37955604 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.234155941 7.184561376 7.19459582 6.859548131 6.777803175 7.466647517 7.148577264 7.138494925 7.26906026 144898943 dsrB Sulphur sulfite reductase Magnetospirillum gryphiswaldense MSR-1 7.422655389 7.282345593 7.297933871 7.350374516 7.196544986 7.431360809 7.431081698 7.657692201 149203080 gyrB other category gyrB Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.61489452 8.589882834 8.450450797 8.019938563 8.684206802 8.492628842 8.569360817 8.473595457 8.370169108 9655496 ZntA Metal Resistance Zinc Vibrio cholerae O1 biovar eltor str. N16961 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 7.687259138 7.654485872 7.468734106 7.22053498 7.37308662 7.660304743 7.423282301 7.549880357 227295546 cda Carbon cycling Carbon degradation Starch Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 7.475020203 7.46766941 7.470890609 7.306005209 7.513917643 7.652307786 7.640084859 7.646780688 7.702833064 82716671 oxdB Organic Remediation Aromatics Nitoaromatics Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.729048062 8.063302874 8.344582488 8.425939318 8.81963026 8.598443244 9.074542894 8.763756472 8.582800113 118669094 nmoA Organic Remediation Aromatics Nitoaromatics Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.727139723 7.802502122 7.857740349 8.168031684 7.936145244 7.881053041 7.877734469 123967458 bphA Organic Remediation Aromatics Polycyclic aromatics Sphingobium yanoikuyae 7.331704447 7.595722145 7.589398716 7.552966639 7.153284899 7.981688591 7.60391742 7.800744222 189494927 phoA Stress Phosphate limitation Chlorobium phaeobacteroides BS1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 8.059297395 8.1626681 212541793 pheA Organic Remediation Aromatics Other aromatics Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.726598978 7.906209374 7.980258968 7.642497818 7.774202354 8.11489261 7.797782478 7.664117195 7.764807093 134267082 alkH Organic Remediation Other Hydrocarbons Geobacillus thermodenitrificans NG80-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermodenitrificans; 8.214584276 8.118407686 7.959211482 8.1386178 8.371142499 8.516396495 8.138250342 8.159088023 8.387615324 259346065 ahpC Stress Oxygen stress Silicibacter sp. TrichCH4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.543284529 7.469020533 7.358478469 7.641739541 7.152672475 7.45046631 7.575153982 7.274003011 260578875 oxyR Stress Oxygen stress Corynebacterium jeikeium ATCC 43734 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 7.992412055 7.994775612 7.572234251 7.892920317 7.721493539 8.017798365 7.913371807 7.701441792 7.650438259 238709661 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Yersinia rohdei ATCC 43380 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia rohdei; 7.574340047 7.95745629 8.213068603 7.556283431 8.635413107 7.580256809 7.995865587 7.823636121 257202828 pstB Stress Phosphate limitation Roseburia intestinalis L1-82 7.493990874 8.168529923 8.300711181 7.817283144 8.094705686 7.916368955 7.942678436 8.376973275 7.969724625 57868972 gyrB other category gyrB Candidatus Hamiltonella defensa superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Candidatus Hamiltonella; 8.349511258 8.604698012 7.470180219 7.477164185 7.658344689 6.810427992 7.819153145 7.496384023 7.444005737 8.16750098 88712162 mannanase Carbon cycling Carbon degradation Hemicellulose Flavobacteriales bacterium HTCC2170 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales; 8.334124394 8.488628525 7.494556235 7.43590922 7.421612323 6.667182583 7.597989501 7.440223779 7.486411431 52212598 narI Stress Oxygen limitation Burkholderia pseudomallei K96243 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 7.61084696 7.964289369 8.120816514 8.03868558 8.098304916 7.750639457 7.999961234 7.908235284 94552049 pstB Stress Phosphate limitation Candidatus Koribacter versatilis Ellin345 8.058832678 8.477926957 7.569224275 7.639267704 7.772640614 6.874802435 7.235636426 7.726754469 7.310244402 7.439393748 7.707421305 160941333 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 8.756874618 8.787339177 7.942651355 7.994643184 8.190672514 7.925322673 7.717699618 7.801805828 8.073202085 8.070939613 52548184 mnp Carbon cycling Carbon degradation Lignin Phanerochaete chrysosporium 7.521822213 7.454324884 7.667704583 7.388160767 7.858998292 7.669453659 7.6308405 7.423405733 21242067 pimF Organic Remediation Aromatics Aromatic carboxylic acid Xanthomonas axonopodis pv. citri str. 306 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas axonopodis; 7.010693152 7.237284951 7.404197833 7.163585834 6.745924357 7.158933695 6.876625787 222112015 sigma_32 Stress Sigma factors Diaphorobacter sp. TPSY superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax ebreus; 8.862376267 8.716646321 8.385493345 8.171708682 8.913473259 8.859788225 8.766360763 8.487079009 8.573330262 283786574 pap virulence adhesin Citrobacter rodentium ICC168 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 7.378258108 7.57016708 8.00591959 8.220553785 7.930792942 8.222161368 7.406225016 7.486662463 209496467 cap virulence capsule Arthrospira maxima CS-328 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira maxima; 7.386277028 7.787284712 7.513093281 7.083355332 7.572297255 7.716110457 7.8966663 7.661497317 7.490509301 6681676 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces thermoviolaceus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.367065101 8.317486247 8.38988211 8.712144315 8.497346666 8.482549797 8.548464737 8.878162241 8.373603404 123228556 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.643125397 7.51324053 7.778459838 7.832386678 7.474834044 7.416936868 7.637963563 7.606733699 254483139 hrcA Stress Heat shock marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.083896616 7.809187818 7.652438441 8.083824698 7.907143367 7.898074274 7.816678955 7.92684591 68135535 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.309563145 8.575385028 7.787853929 7.98268451 8.173276698 7.819573514 8.144041794 8.315003762 8.478634314 8.461847989 8.309824032 111148637 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 7.889935785 8.255937223 8.073880162 8.09020614 7.687344839 7.9902847 8.474532139 8.255310728 8.087431949 8.183899051 8.492431947 84502280 tftH Organic Remediation Aromatics Chlorinated aromatics Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 7.395735916 7.635508171 8.01583797 8.127041725 8.012422534 8.150036259 8.156591797 7.977134974 8.143213049 192764346 narG Nitrogen Denitrification uncultured bacterium 7.946556298 8.177272125 7.960117011 7.707097941 7.437165947 7.540108428 7.758118665 7.85700423 7.766518538 7.775875338 170076948 ahpC Stress Oxygen stress Synechococcus sp. PCC 7002 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.048635221 6.733229729 56413449 TehB Metal Resistance Tellurium Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 6.936619143 6.897413516 240867512 iro virulence Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 7.77265914 7.779991747 7.294539283 7.693198911 7.628440389 7.721617948 7.482602476 14022839 nmoA Organic Remediation Aromatics Nitoaromatics Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 8.305573277 8.211625928 8.098172599 7.497571272 8.449981042 8.069178627 8.155161375 8.302666463 208605074 hzo Nitrogen Anammox uncultured planctomycete 7.492842312 7.281122575 7.437586551 7.215555526 7.43788303 7.408747118 7.282129052 7.626083338 7.556294988 256753602 ctsR Stress Protein stress Clostridium papyrosolvens DSM 2782 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium papyrosolvens; 8.30146536 8.331458821 7.739698484 7.683749293 7.862169974 7.851609525 7.902073786 8.230202473 8.291717076 8.311298097 8.225992198 88865790 pimF Organic Remediation Aromatics Aromatic carboxylic acid Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 8.266182559 8.14551666 8.0650314 7.515819129 8.058695006 7.909125299 8.046054023 7.998691321 161506109 arcB Stress Oxygen limitation "Salmonella enterica subsp. arizonae serovar 62:z4,z23:--" superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 7.571408937 7.766344304 7.617205061 85713827 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Nitrobacter sp. Nb-311A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter; 7.740573145 7.555538062 8.266051846 7.618400139 7.535423965 8.20226637 7.3695617 7.649068309 7.463839355 171779190 glnR Stress Nitrogen limitation Streptococcus infantarius subsp. infantarius ATCC BAA-102 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus infantarius; 7.929160572 7.922676707 7.333824968 7.057833565 7.138462527 6.857610233 7.377976662 15966652 MFS_antibiotic Antibiotic resistance transporter Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 8.3637989 8.378045554 7.994589888 7.933853635 7.521648743 7.566031035 7.566197333 7.923743383 8.10786089 8.391912052 13560699 Host_recognition_T4_type Bacteria phage HOST RECOGNITION/STRUCTURAL Enterobacteria phage PP01 order:Caudovirales;family:Myoviridae; 8.276354663 8.241858998 8.227490716 8.313128201 8.039820671 8.336608855 8.666641562 8.434687334 8.592197388 8.431567587 8.545715858 219995555 mer Metal Resistance Mercury Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 8.318951028 7.921183523 7.961940426 8.017339704 8.020876529 8.16936986 8.176222813 7.695702454 7.771239914 212558281 pilin virulence pilin Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 7.986574874 7.318654858 7.323379314 7.982445294 55229112 nifH Nitrogen Nitrogen fixation Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 9.134627097 9.299867831 8.560205999 8.615627997 8.497244007 8.163301999 8.108300226 8.304594123 8.214051117 8.59259259 87135930 sigma_70 Stress Sigma factors Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 7.403298263 7.407320804 7.418074736 7.619076992 88866429 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.849342655 7.232091413 7.561840638 7.609549124 7.054285076 7.877979913 7.018496181 7.375976966 7.443890378 169813003 sigma_24 Stress Sigma factors Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 7.143756058 7.339401631 6.69111683 7.088897403 7.517968732 7.278092765 7.479426545 70673007 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.416735765 7.326148986 7.425054339 7.174903756 7.208606766 7.530464579 7.291109925 7.370458261 7.631661925 68535535 alkK Organic Remediation Others Corynebacterium jeikeium K411 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 7.796005492 7.507318533 7.281647274 7.37448865 7.382129241 8.109150159 7.314013433 7.427819459 7.607415386 257438208 pstS Stress Phosphate limitation Faecalibacterium prausnitzii A2-165 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Faecalibacterium;species:Faecalibacterium prausnitzii; 7.723147154 7.392871251 7.735145235 7.58434491 7.643511008 7.319711552 7.649455254 7.427917911 91807154 nosZ Nitrogen Denitrification uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 7.416089097 7.614668472 7.607021214 7.118255076 8.062539438 7.501042316 7.5081517 8.084224487 145571106 nifH Nitrogen Nitrogen fixation Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 8.10206362 8.477909788 7.608202249 7.70350812 7.334491209 8.12989245 7.575840152 7.519836293 7.510480687 7.610919145 78514277 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.828057604 7.598405568 8.277399344 8.300523453 7.818774613 8.45358083 7.932260756 7.968578616 7546787 CopA Metal Resistance Copper Lactobacillus sakei superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus sakei; 8.09342014 8.757999393 7.603674458 7.694901549 7.770285156 7.415618525 7.270341528 7.619097549 270289859 SMR_antibiotics Antibiotic resistance transporter Pediococcus acidilactici 7_4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Pediococcus;species:Pediococcus acidilactici; 8.527970656 8.138639157 8.05200732 7.990248311 8.06100881 7.980407374 8.198872679 8.110114522 8.558463301 8.193270974 7.932347378 255034297 fnr Stress Oxygen stress Dyadobacter fermentans DSM 18053 7.837126871 8.107643092 7.874683205 7.990312235 8.287093109 8.255865171 8.067849963 7.981060675 7.58371935 62084078 gyrB other category gyrB Streptococcus dysgalactiae subsp. equisimilis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus dysgalactiae; 8.029579679 7.81504038 7.557020573 7.038853569 6.933738651 7.417489577 7.652280202 7.585472638 7.226436307 227348642 SMR_antibiotics Antibiotic resistance transporter Corynebacterium pseudogenitalium ATCC 33035 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium pseudogenitalium; 8.527154853 8.63835637 8.376436725 8.376206915 8.559615682 8.344144372 8.656139453 8.53067456 8.657695463 8.734327578 8.132288798 121592498 pimF Organic Remediation Aromatics Aromatic carboxylic acid Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 7.305926713 7.570198079 8.115591894 7.877912257 7.681616897 7.385972483 114047706 cda Carbon cycling Carbon degradation Starch Shewanella sp. MR-7 7.955008324 7.982430931 7.716348154 7.601531038 8.087256379 8.060111326 8.021416183 7.898549488 8.027887167 89113935 glx Carbon cycling Carbon degradation Lignin Phanerochaete chrysosporium superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 7.640087597 7.464475304 7.741638778 7.204188986 8.057793957 7.2861686 7.385103061 7.259798796 32307883 narG Nitrogen Denitrification uncultured bacterium 7.609402242 7.416487307 7.13782993 7.482248551 7.370890563 7.812521529 7.793585605 7.550489036 7.624149562 126359477 exaA Organic Remediation Chlorinated solvents Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.363622107 8.32374351 8.147787853 8.607975991 8.544038148 8.238611869 8.356566988 8.329869272 7.985486231 254469197 proV Stress Osmotic stress Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 8.34542796 8.140480439 7.236411402 7.329077649 7.755884928 7.888991147 7.387112284 7.828417371 7.356701079 7.317602319 7.672617848 134099151 chnB Organic Remediation Other Hydrocarbons Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 7.070307446 7.423509186 7.555599082 7.068446532 7.540416583 209900657 CadA Metal Resistance Cadmium Enterobacter cancerogenus ATCC 35316 8.171581965 8.126471715 8.061690819 7.932213061 8.218693308 8.025847036 8.069879996 7.990828375 7.928466334 7.882831843 7.60011674 188029469 cydA Stress Oxygen limitation Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 7.733462614 7.773061331 7.798912599 7.711040214 7.722274518 7.857027307 7.56347526 7.673851992 82717133 pnbA Organic Remediation Aromatics Nitoaromatics Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.002319261 8.084839661 8.058888209 8.16666572 8.150340424 7.837799484 8.015745131 7.977990031 8.025239485 90325374 oxyR Stress Oxygen stress Photobacterium profundum 3TCK superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 8.202320466 8.26434314 7.540732537 7.29907155 7.504526935 7.554398561 7.457091044 8.034877386 7.708837493 7.523858246 7.600086742 254477421 sigma_24 Stress Sigma factors Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.6849269 8.846815332 8.66051639 8.549427019 8.749653867 8.628701408 9.242459236 8.876291495 9.190682665 157085249 aclB Carbon cycling Carbon fixation Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 8.148160181 8.240981773 7.823451014 8.153676419 8.054825968 8.325063899 7.887923859 7.797025045 7.802188334 268591017 narI Stress Oxygen limitation Providencia rettgeri DSM 1131 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rettgeri; 7.42364652 7.637763752 7.482995876 7.651458177 7.481197344 7.794261896 7.289226914 7.255764804 7.3378917 88799154 phoB Stress Phosphate limitation Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 8.095822332 8.283273036 8.204452026 8.054264584 7.754376986 8.002455688 8.355480277 8.060587855 8.172926629 7.968204935 8.431820382 39577331 hly virulence hemolysin Bdellovibrio bacteriovorus HD100 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 6.888167276 7.179096848 40744129 ChrA Metal Resistance Chromium Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.412505992 7.238650918 7.316552476 7.251984365 6.895144108 7.314338775 7.205300577 119494117 pheA Organic Remediation Aromatics Other aromatics Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 7.929369563 8.719765938 8.833006739 8.430459328 8.889530457 8.208571275 8.188104405 8.267584064 184185961 carA Organic Remediation Aromatics Heterocyclic aromatics carbazole-degrading bacterium CAR-SF 7.901558031 8.281154808 7.662081972 7.531597007 7.442940365 7.218001977 7.639744449 7.895932282 7.457872035 7.642467235 7.667103483 142850418 ArsC Metal Resistance Arsenic Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 7.503625243 7.362450389 7.799715095 7.811284462 7.322483129 7.898733933 7.89408833 7.706521938 119718804 cellobiase Carbon cycling Carbon degradation Cellulose Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.307366557 8.313690444 7.627915344 7.242350241 7.503205869 7.755835304 7.090296501 7.364496117 6.96118174 7.482834541 269826568 SMR_antibiotics Antibiotic resistance transporter Vibrio alginolyticus 40B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 7.821829611 8.141069417 7.382826401 6.98945067 7.215661036 6.982706069 6.824858867 7.513839115 6.880188956 6.893154924 7.233683693 91698869 fnr Stress Oxygen stress Polaromonas sp. JS666 7.557846986 7.326237147 7.562604723 6.981339446 7.572049712 7.149266883 7.163263145 7.516848028 163751572 sigma_70 Stress Sigma factors Shewanella benthica KT99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella benthica; 7.803128632 7.935406819 7.64601854 7.699604046 7.675730625 7.830909696 7.507237214 7.885264662 8.108051872 7.83364725 87125180 CopA Metal Resistance Copper Synechococcus sp. RS9917 7.370566025 7.579281267 7.898780284 6.997764647 7.885822437 7.252806452 7.419092463 238792216 phoA Stress Phosphate limitation Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 10.00982593 9.99367623 10.05446206 10.12847727 10.15302984 10.02954982 10.17659141 10.17736307 9.974237752 9.933668849 192764406 narG Nitrogen Denitrification uncultured bacterium 8.570442934 8.541014857 8.31407103 8.259048526 7.819002315 7.681098159 8.48929522 8.435615207 8.553011084 8.254877316 251795829 pstA Stress Phosphate limitation Paenibacillus sp. JDR-2 7.690852471 7.785114213 7.543880574 7.405177494 8.088027476 7.678450303 7.846504815 7.645323651 7.820941984 257164201 pstB Stress Phosphate limitation Enterococcus faecalis X98 7.823656219 8.644919343 7.257388712 7.176705276 6.943889871 162072792 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.888023547 7.994385411 7.686607941 7.8820834 7.919683559 7.988239164 7.716575516 8.027366267 7.574756229 7.66150779 7.693223248 70734118 SMR_antibiotics Antibiotic resistance transporter Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.446815736 8.222159327 8.296597748 7.540679258 8.297683865 7.897993567 8.410256085 8.263441303 149928245 pilin virulence pilin Limnobacter sp. MED105 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 7.483277131 7.444605855 7.285554768 7.343257667 7.594274794 7.503094083 7.196478239 7.575664539 268592186 phoA Stress Phosphate limitation Providencia rettgeri DSM 1131 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rettgeri; 6.634297894 7.389882772 16330429 pstS Stress Phosphate limitation Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 7.904679507 8.236848935 7.541486483 7.629303485 7.789104758 7.304357435 7.829786528 7.672992796 7.543539953 7.788917235 7.818963574 20090203 CopA Metal Resistance Copper Methanosarcina acetivorans C2A 7.801554367 8.044098658 220935971 CadA Metal Resistance Cadmium Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 7.746326229 7.890107963 7.766134921 7.195277577 8.040750882 7.90607439 7.817888083 7.854159103 8.135675603 218165395 clpC Stress Protein stress Cyanothece sp. PCC 8801 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.323823491 8.295229946 7.783328665 7.665052058 7.504540661 6.887434188 6.989576039 7.551770685 7.387729718 7.693448636 15897894 formate_hydrogenlyase_complex Bioleaching Carbon fixation Sulfolobus solfataricus P2 8.413587947 8.45246684 7.57056211 7.393520584 7.438705857 6.945621905 6.859523003 7.335814131 7.305143692 7.530232949 56680079 CopA Metal Resistance Copper Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 8.324528296 8.259113744 8.276242177 8.24691539 8.169909406 8.328704327 8.325126181 8.321141065 8.230390214 8.152117281 8.00084338 70728700 pcaG Organic Remediation Aromatics Other aromatics Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.00451132 8.103505897 8.165576272 8.339247135 8.654385366 8.146471701 8.522001652 8.548109485 8.318688091 72160680 pimF Organic Remediation Aromatics Aromatic carboxylic acid Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 8.293993042 8.326569712 7.97312136 8.016036091 8.26623043 6.939937563 7.682072905 7.507516689 7.929961299 3758887 nirS Nitrogen Denitrification Roseobacter denitrificans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.041693214 7.397311051 7.12847386 7.127371557 218261698 katA Stress Oxygen stress Parabacteroides johnsonii DSM 18315 8.262888136 8.276317263 8.496784156 8.297667953 8.295655218 8.293924937 8.32515551 8.334699083 8.365605815 8.269852985 7.754070997 78167008 pstC Stress Phosphate limitation Chlorobium luteolum DSM 273 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon luteolum; 8.020910511 8.156924702 8.178488336 7.591648506 7.434409455 7.481297367 7.60301204 7.877979913 7.699378269 7.753832809 7.272350099 108761238 pimF Organic Remediation Aromatics Aromatic carboxylic acid Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 7.41534052 7.655684119 7.466847472 7.700205524 7.656597457 7.605475287 7.69343043 7.687165191 256359113 amyA Carbon cycling Carbon degradation Starch Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 8.219230132 8.12426091 7.972076872 8.398960995 8.298788594 8.115698875 7.8869577 8.082012718 7.894093267 154253808 czcC Metal Resistance "Cadmium,Cobalt,Zinc" Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 7.902907706 8.209610148 7.326313902 7.530550302 7.892413963 7.741364139 7.551492859 8.242083587 7.715034974 7.658513499 7.686223078 170783573 ChrA Metal Resistance Chromium Arthrobacter sp. Chr15 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8.407977641 8.176347795 8.03870086 7.656997646 7.875410192 7.999754455 7.989716889 8.19943322 15029329 mdlB Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces lavendulae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.399284635 8.211526972 7.763081901 7.799820979 7.883852347 8.271746996 8.026750255 8.165793779 7.886037621 8.120033971 7.839948315 212537331 phytase Phosphorus Phosphorus utilization Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.63093571 7.535470212 7.425952615 7.329815057 7.298903014 7.718891926 7.539126628 7.352997311 7.667172233 29833590 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 7.457466656 7.733156295 8.493059918 8.276842922 7.991703819 8.480018079 7.9528798 8.270422772 8.119256938 126179448 SMR_antibiotics Antibiotic resistance transporter Methanoculleus marisnigri JR1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanoculleus;species:Methanoculleus marisnigri; 7.786638461 7.900535427 8.073455533 7.926581923 7.929999338 8.032898528 8.223965309 8.147900768 7.891123125 145318440 SMR_antibiotics Antibiotic resistance transporter Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 8.733889124 8.780179679 8.454476908 8.373442304 8.359160993 8.167533385 8.148059151 8.304570973 8.091579945 8.195968556 8.199780889 111224515 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 8.102411543 7.960909028 8.142484706 8.200010697 8.221969923 8.353720713 8.35842173 8.136268987 8.516091154 8.44410919 8.274550691 209958041 fnr Stress Oxygen stress Rhodospirillum centenum SW 8.047497952 8.246635949 7.930308195 8.033764312 8.464647525 8.390370537 8.33135731 8.087020551 8.171412249 209401844 narG Nitrogen Denitrification uncultured bacterium 8.105287085 8.309018286 8.011644453 7.914376661 7.784030964 7.754393697 7.910236183 7.973924172 7.861152667 7.630462487 7.754703108 57233709 rd Organic Remediation Chlorinated solvents Dehalococcoides ethenogenes 195 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides;species:Dehalococcoides ethenogenes; 6.610648735 7.237016686 20090140 atzA Organic Remediation Herbicides related compound Methanosarcina acetivorans C2A 8.180430139 8.067831991 7.935312238 7.493644903 7.40979389 6.875081815 7.705292111 7.20661198 7.424865029 7.745956039 251775110 pilin virulence pilin Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 7.268835584 7.046111957 6.978146109 6.602865004 7.38484175 222086765 SMR_antibiotics Antibiotic resistance transporter Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.32514252 8.580508721 8.175763097 8.545137025 8.387201494 8.226805658 8.285950987 8.672384013 8.525670662 8.628367281 8.108300348 70673053 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.732738297 7.866614572 7.829072451 7.453839015 7.81018977 7.764649807 7.670847208 7.727080482 7.746089724 109897540 AceA Carbon cycling Carbon degradation others Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 7.092023788 7.40481482 74317764 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 8.243008909 8.600532329 7.614747554 7.815830336 7.672833713 7.577217693 7.347741288 7.922595646 7.365747971 7.310699205 7.763681557 161525150 sigma_24 Stress Sigma factors Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 9.44270046 9.700662703 9.830094475 9.857956376 10.22955294 9.797041821 9.743122483 9.85137187 166406451 norB Nitrogen Denitrification Azospirillum brasilense superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum; 8.479861918 8.31844153 7.866929927 7.586001387 7.979229944 8.417665829 7.924905043 8.719041699 7.99087396 7.91943748 7.680888623 89358269 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 7.453044497 7.522132831 7.373944887 7.624383087 7.771731533 167663586 grpE Stress Heat shock Clostridium scindens ATCC 35704 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium scindens; 7.322476919 7.214424455 7.232397235 120605849 CopA Metal Resistance Copper Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 7.97767905 8.214159747 8.085496677 7.865464015 8.527994023 8.303965861 8.137773336 8.034461218 8.107637956 27351207 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.024489392 7.914658802 7.804146033 7.512149706 7.843075171 7.815738996 7.917733837 7.720364783 8.00561806 1890342 cumA Organic Remediation Aromatics Other aromatics Cupriavidus necator 8.031239117 8.308698037 8.333918168 8.046463528 8.221511947 8.270905926 7.834120851 8.125576641 8.214418663 212689048 ara Carbon cycling Carbon degradation Hemicellulose Bifidobacterium pseudocatenulatum DSM 20438 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium pseudocatenulatum; 8.042310788 8.070104954 7.53111749 7.456446513 7.274729255 7.473998565 7.463837017 7.995691509 7.749423211 7.753527206 7.712005829 212701375 ara Carbon cycling Carbon degradation Hemicellulose Bacteroides finegoldii DSM 17565 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides finegoldii; 8.348863846 8.040211846 8.089798305 8.170321291 8.10639015 8.107005441 8.60988622 8.289109371 8.502622951 8.572890086 8.573303986 2072732 carA Organic Remediation Aromatics Heterocyclic aromatics Pseudomonas putida 7.780292926 7.644723226 8.080566591 8.206249448 7.953113536 8.496184747 7.569569491 7.913830676 7.597115444 80563496 narG Nitrogen Denitrification uncultured bacterium 8.043298882 8.065126076 7.962927937 7.914266558 7.959168935 7.907002766 7.856566034 7.9434802 7.713764749 7.452127608 167652663 bglP Stress Glucose limitation Anaerostipes caccae DSM 14662 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Anaerostipes;species:Anaerostipes caccae; 8.409038801 7.560953127 7.432524747 7.752352565 8.079082426 7.795357676 7.782790625 115381176 gyrB other category gyrB Spiroplasma insolitum superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Entomoplasmatales;family:Spiroplasmataceae;genus:Spiroplasma; 7.42991486 7.542101072 7.741000444 7.171677979 7.656156794 7.803804436 7.511100613 7.654577415 7.716450726 219679845 gyrB other category gyrB gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.017040759 7.909176606 7.415398303 7.726960981 7.707198131 7.470565739 7.379507607 8.006936166 7.408426445 7.275392439 7.460833521 163940517 TehB Metal Resistance Tellurium Bacillus weihenstephanensis KBAB4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus weihenstephanensis; 7.733386029 8.001691751 7.074632658 7.076904601 6.912172285 120326304 fnr Stress Oxygen stress Marinobacter aquaeolei VT8 8.481634801 8.639174517 8.046516403 7.895996949 7.902204553 7.6184179 7.871805206 7.858713552 7.67287336 8.197244184 218763066 bco Organic Remediation Aromatics Aromatic carboxylic acid Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 8.301046094 8.262386667 8.059555185 8.279556448 8.02585772 7.893034955 8.523264251 8.159611098 8.310225384 8.005689373 8.186943715 121605674 glnA Stress Nitrogen limitation Polaromonas naphthalenivorans CJ2 8.261449428 8.38747249 7.962801235 7.522952037 7.741881313 7.5201166 7.268788265 7.732123538 7.34357925 7.682210084 32473595 hly virulence hemolysin Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 8.051427013 8.381698537 7.62874755 7.524745702 7.739780548 7.631404457 8.453409497 8.141435257 8.384185352 8.13810072 117926481 fnr Stress Oxygen stress Magnetococcus sp. MC-1 8.568294534 8.296063856 7.848534458 7.734096505 7.766915073 7.465829816 7.598537752 8.003779019 7.68217729 7.723912985 7.850776414 66766722 pcaG Organic Remediation Aromatics Other aromatics Xanthomonas campestris pv. campestris str. 8004 8.460335973 8.257895687 8.121236676 8.133523691 7.986599653 8.122361721 8.175646531 8.475952074 8.395660341 8.289337177 100123316 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Burkholderia pseudomallei S13 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 7.497977201 7.207647308 7.671559525 7.127293469 7.497553961 7.310291881 198266363 gyrB other category gyrB Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 9.401157935 9.306569862 8.423886954 8.370080032 9.013604924 8.733634947 9.173939279 8.243038635 8.805634277 170656630 sigma_32 Stress Sigma factors Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 7.665848165 7.914316341 7.765696824 7.810731865 7.901033478 8.009264681 8.089221176 7.727605493 7.731057643 62719430 B_lactamase_A Antibiotic resistance Beta-lactamases Pseudomonas aeruginosa superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.625267573 7.507879742 7.573703126 145298146 oxyR Stress Oxygen stress Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 7.516726752 7.820778622 7.502972986 7.084634902 7.680792334 8.070467695 7.855952326 7.530079004 7.510655701 198266454 ppx Phosphorus Phosphorus utilization Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 8.155616839 8.036948249 8.109569118 8.100437408 8.10693679 7.990410853 8.03139696 8.121707601 7.680998039 209401904 narG Nitrogen Denitrification uncultured bacterium 9.204172352 9.285111082 8.521320724 8.351671434 8.616641611 8.993225209 8.599661562 9.133064602 8.585780211 8.247683055 8.889234132 50557418 AceA Carbon cycling Carbon degradation others Yarrowia lipolytica superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Dipodascaceae;genus:Yarrowia;species:Yarrowia lipolytica; 7.265818055 7.361825753 7.636086293 7.520376007 7.169611472 7.661657581 7.625823249 7.796997609 7.970310411 126641421 pcc Carbon cycling Carbon fixation Acinetobacter baumannii ATCC 17978 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 7.133643672 7.197424593 51855416 AceB Carbon cycling Carbon degradation others Symbiobacterium thermophilum IAM 14863 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVIII. Incertae Sedis;genus:Symbiobacterium;species:Symbiobacterium thermophilum; 8.326369836 8.564003972 8.136664025 7.96346463 7.939857824 8.036729813 8.210030992 8.079519623 8.07205664 8.235812351 261419014 fnr Stress Oxygen stress Geobacillus sp. Y412MC61 7.660505126 7.472999596 7.506799215 7.258625364 7.822446887 7.728527751 7.661052145 7.288797369 146284565 vip virulence virulence protein Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 7.206221092 7.446254869 7.798476392 7.952021354 7.234025029 7.943534157 7.529076789 7.380515751 7.702859429 219861449 PobA Organic Remediation Aromatics Aromatic carboxylic acid Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 8.02365657 7.909004183 7.852640856 7.481658609 7.917116867 7.791091514 7.537355663 7.919099694 119535742 Catechol Organic Remediation Aromatics Other aromatics Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.454684314 8.73636341 8.529297516 8.397777646 8.00162265 8.351510549 8.398120971 8.423942816 8.449619137 8.52086949 7.927908398 87199174 Arylest Organic Remediation Aromatics Other aromatics Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 8.271796681 8.33165746 7.79946933 7.784187707 7.912596489 7.820643355 8.022275075 8.043784294 8.119980991 8.000371743 7.890765587 16330385 sigma_24 Stress Sigma factors Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 8.173346456 8.309221472 7.434465884 7.724436631 7.215747977 6.92158248 7.946663773 7.028260557 7.445263255 160875495 B_lactamase_C Antibiotic resistance Beta-lactamases Shewanella baltica OS195 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 8.033877833 8.172555863 7.392183632 7.472346086 7.434891443 7.002015423 7.617645991 7.526899604 7.692819217 7.092176669 7.413231836 94556060 catB Organic Remediation Aromatics BTEX and related aromatics Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 7.336416297 7.798862504 7.186637738 7.394837328 113526596 fnr Stress Oxygen stress Ralstonia eutropha H16 8.335405559 8.276401236 8.318820097 8.285433236 8.154740465 8.077875916 8.493657857 8.079268849 8.411177945 8.18396737 8.318314556 118717115 nifH Nitrogen Nitrogen fixation Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 7.89077295 8.158763676 8.10317175 8.362344162 8.155324318 8.010519362 7.891975204 8.033941806 7.977863156 224817562 gyrB other category gyrB Thioalkalivibrio sp. K90mix superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 8.408599385 8.304477287 7.995496199 8.119421452 8.081204242 7.808833817 8.000577534 8.101972692 8.158957336 8.259716516 8.105769361 71740940 gyrB other category gyrB Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 8.102165951 8.133869794 7.22289321 7.375198893 7.824816263 7.691850346 6.940851231 8.138367043 7.514414396 7.421682247 7.695889963 258645517 grpE Stress Heat shock Dialister invisus DSM 15470 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Dialister;species:Dialister invisus; 7.684525503 7.736281472 7.668965063 7.229837849 7.120618518 7.903020723 7.26826787 7.43288654 7.712147407 61806417 primase Bacteria phage REPLICATION Cyanophage P-SSP7 8.184104113 8.114203756 8.422892614 8.286548348 8.058260155 8.256402362 8.00659689 8.401062981 8.165709033 8.083297938 7.865542186 19909695 gyrB other category gyrB Paracoccus aminophilus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 8.084576315 8.08465304 7.364730476 7.637521113 8.150255746 7.939107277 7.283923007 8.243315118 7.490287645 7.22545604 7.55910147 157375054 cytochrome Energy process Energy process Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 7.716931862 7.703573687 7.711090766 7.251288817 7.631345495 7.655373248 7.935901388 78188264 SMR_antibiotics Antibiotic resistance transporter Chlorobium chlorochromatii CaD3 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium chlorochromatii; 8.44176267 8.3906045 7.502358778 7.705747101 7.746740289 7.727914062 7.313952242 7.995660988 7.456197027 7.407985594 7.633764909 121709449 phytase Phosphorus Phosphorus utilization Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7.462817741 7.642004553 7.923902146 8.02510134 7.638387349 7.856658359 7.75116997 7.942533275 89033282 mer Metal Resistance Mercury Escherichia coli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 8.535070746 8.382085763 8.128234387 7.965085466 8.208377251 8.051573507 8.011440996 8.15372436 8.085929306 8.160332017 8.320033428 167071031 nitA Organic Remediation Aromatics Other aromatics Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.377599787 7.507368396 7.927092668 7.832705462 7.566013524 8.315813129 7.756897456 7.352034513 7.804308455 46097610 nagG Organic Remediation Aromatics Aromatic carboxylic acid Ustilago maydis 521 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Ustilaginomycetes;order:Ustilaginales;family:Ustilaginaceae;genus:Ustilago;species:Ustilago maydis; 7.778423966 7.856726377 7.967001506 8.336476858 7.824610251 7.925035039 7.413026867 7.787219417 7.529598681 219677824 atzA Organic Remediation Herbicides related compound gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.663200273 7.473420631 7.292577214 7.491451711 7.826260317 8.042512662 7.950476214 8.025947165 7.730919454 116069621 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.302186901 8.252470335 8.04503927 7.956594075 8.388671898 8.032351718 8.209433922 7.968597874 8.023192357 269125387 B_lactamase_C Antibiotic resistance Beta-lactamases Thermomonospora curvata DSM 43183 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora;species:Thermomonospora curvata; 8.315715657 8.5430427 8.044326968 7.852948668 7.827428393 8.282210031 8.019863483 8.186327848 8.107790354 7.900915852 8.181166046 60326739 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.682330827 8.452237995 8.079970253 7.893217898 8.233884943 8.427428184 8.123729339 8.067160158 8.152005259 8.467807095 8.557293545 30269625 nasA Nitrogen Assimilatory N reduction Marinomonas sp. 'Barents Sea 8' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 8.016405027 7.652263501 7.611098607 7.417910581 7.408556641 7.741587884 7.522243021 7.234163955 7.265057367 83317000 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.619104561 7.386111379 7.214545984 7.823845535 7.495166428 7.532286038 7.644075041 146401816 cadmium_resistance_gene Bioleaching Metal Resistance Acidiphilium cryptum JF-5 7.764467259 7.703805121 7.154302639 7.551160193 7.669036663 14039631 nirK Nitrogen Denitrification Nitrosomonas sp. NO3W superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 6.86237981 7.052077378 7.018368242 7.271313626 149923503 vanA Carbon cycling Carbon degradation Others Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 7.176107137 7.173027014 117983992 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.51666419 8.070478995 8.022139965 7.796854832 8.562497883 8.814004331 8.745410366 8.376689685 8.645947523 8.504820152 8.908752617 114194225 CopA Metal Resistance Copper Aspergillus terreus NIH2624 7.227158754 7.562958029 8.271095732 8.394168333 7.932604105 8.192783846 7.708792065 7.882069887 7.99650109 259164683 glnA Stress Nitrogen limitation Corynebacterium efficiens YS-314 7.700598144 7.677715379 7.840617058 7.032610109 7.050714444 7.378620724 7.68418546 15074066 MFS_antibiotic Antibiotic resistance transporter Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 8.54567323 8.226300515 8.21710904 8.42404382 8.705329991 8.530226853 9.046630981 8.9058709 8.936046459 8.550808215 118758722 tfdA Organic Remediation Aromatics Chlorinated aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.837927556 8.601776273 8.621174244 8.658437005 8.571799355 8.348222482 8.7121175 8.756769447 8.426096047 8.392441208 8.360824882 86740770 nagG Organic Remediation Aromatics Aromatic carboxylic acid Frankia sp. CcI3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 6.966873359 7.310691056 126709002 fnr Stress Oxygen stress Sagittula stellata E-37 8.000243033 7.762882388 7.826752209 8.345766454 7.87598082 8.467494388 8.112677891 8.092445749 145558155 sox Sulphur Sulphur oxidation Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 7.492522246 7.624418685 7.724298623 7.389178336 7.490134612 7.579693221 7.97663999 95928999 sigma_70 Stress Sigma factors Desulfuromonas acetoxidans DSM 684 7.351709539 7.715610863 7.015551647 7.256052025 6.885721031 7.057817394 89898882 fnr Stress Oxygen stress Rhodoferax ferrireducens T118 8.020755128 8.235931328 7.578065652 7.484699165 7.585597534 7.573382031 8.025686425 8.072637506 8.039862923 7.688916687 7.961705797 255502823 nirS Nitrogen Denitrification uncultured bacterium 8.429682676 8.570508755 8.230480239 7.95713458 8.292510449 7.715626399 8.283258836 7.838316562 7.837287415 8.487450772 192812738 nmoA Organic Remediation Aromatics Nitoaromatics Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.350911859 7.272006397 7.29603405 6.749757147 6.696000979 7.552020957 7.13512089 7.141227911 7.13292283 145590787 tmoABE Organic Remediation Aromatics BTEX and related aromatics Pyrobaculum arsenaticum DSM 13514 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum arsenaticum; 7.183707504 6.926809314 7.188571149 6.837568769 7.478665349 6.987298208 7.363997341 260061143 B_lactamase_C Antibiotic resistance Beta-lactamases Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 8.994771371 9.503792312 8.751763062 8.784508134 8.579998844 8.473930264 8.881626565 8.697867078 8.796296041 8.884002635 8.905141619 517137 amyA Carbon cycling Carbon degradation Starch Natronococcus amylolyticus superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natronococcus; 7.821138483 7.682169618 7.448005153 7.579534098 126436248 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.173641812 8.048524253 8.005362166 7.65892141 7.3265602 7.749461092 7.566723434 7.76443766 7.490329042 7.519430378 117924839 pstB Stress Phosphate limitation Magnetococcus sp. MC-1 7.625516442 7.62628885 7.399866902 7.341317194 7.432071453 121596146 TerC Metal Resistance Tellurium Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 7.541815866 7.677277519 7.796446296 7.434909831 8.073188353 7.779739765 8.167022151 8.170052324 8.07098422 94972016 ArsC Metal Resistance Arsenic Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 7.711897782 7.835831958 7.673379643 7.996044558 8.285671441 8.218758561 7.90522157 7.696856337 148262783 cytochrome Energy process Energy process Geobacter uraniireducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 7.976580641 8.424107687 8.133888286 7.832866557 7.596635583 7.694448468 8.049464441 7.892758994 7.764503407 7.872270309 8.112329061 219864002 mer Metal Resistance Mercury Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.24756697 8.431279957 7.600231654 7.415802973 8.060013973 7.443085468 7.336147952 7.445767934 7.703282386 110337361 CopA Metal Resistance Copper Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 7.483751844 7.582029646 7.799369893 7.189945727 7.196656809 7.766393579 7.710026628 7.694748174 7.836682378 218781951 obgE Stress Radiation stress Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 8.166778308 8.353406811 7.753493498 7.830201593 7.559069698 7.670490299 7.616749005 7.672719063 7.690850738 7.791433706 71361187 amoA Nitrogen Nitrification superkingdom:Bacteria; 7.989582252 7.925617405 7.502521551 7.489589963 7.649121896 7.481867181 7.502450073 7.646786331 7.672630368 7.784259807 7.400814069 46240786 bphA Organic Remediation Aromatics Polycyclic aromatics Bradyrhizobium sp. BTH 7.487147659 7.380326314 7.682572285 7.345294538 7.724927514 7.70048302 7.806531154 7.552692396 7.835365833 133739055 pimF Organic Remediation Aromatics Aromatic carboxylic acid Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 7.702036089 8.082629559 7.289013965 7.221453674 7.407085552 6.980928943 7.062085905 27378577 fnr Stress Oxygen stress Bradyrhizobium japonicum USDA 110 8.263680719 8.49156123 8.337791664 7.665923873 8.083228839 8.168258216 8.978832825 8.301723369 8.521759721 8.266038451 8.642484653 28272316 CopA Metal Resistance Copper Lactobacillus plantarum WCFS1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus plantarum; 8.407355877 8.652895513 8.696272456 8.882040136 8.518234433 8.490496551 9.052613352 8.525196363 8.950075597 8.724412133 8.823006238 23491547 Catechol Organic Remediation Aromatics Other aromatics Burkholderia sp. TH2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.774395853 7.767457765 7.445708456 7.326086531 7.411656698 7.74902777 7.77513178 7.541297096 67154438 proO Organic Remediation Aromatics Other aromatics Azotobacter vinelandii AvOP 7.537870762 7.370422732 7.396274412 7.102966362 7.41037392 7.467567996 7.597279134 7.564906537 7.795470463 89512954 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.142532068 8.189321397 8.097021054 7.961947149 8.070983065 7.791083462 8.188565181 8.055646584 8.23128246 8.279936261 8.248365476 133913439 B_lactamase_A Antibiotic resistance Beta-lactamases Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 8.296717493 8.311493923 8.336713952 8.274925421 8.074932085 8.633487262 8.532269286 8.482186353 8.429972427 8.492472115 8.325744385 187922644 MFS_antibiotic Antibiotic resistance transporter Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8.107909971 7.963122597 7.43264109 7.964792737 7.945359883 8.209313346 7.830174345 7.334623602 7.573705335 110622511 pstB Stress Phosphate limitation uncultured methanogenic archaeon RC-I 7.85302947 7.846056736 7.535609641 7.438246576 7.960796303 7.917572143 7.784072863 7.528895938 8.04888396 120401664 nhh Organic Remediation Aromatics Nitoaromatics Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 7.3571346 7.594695849 7.558602056 7.230724362 7.437307015 7.403841102 8.084746639 161786167 mauAB Organic Remediation Herbicides related compound Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 8.246717253 8.03157508 7.862981367 7.912419022 7.924427725 8.136140902 7.649734797 8.432911283 7.535902364 7.708680468 7.449274174 169830954 fnr Stress Oxygen stress Candidatus Desulforudis audaxviator MP104C 7.910224137 8.256965119 8.071727148 7.768900339 7.426988899 7.552625496 7.755006209 7.966021766 7.784281127 7.541278388 7.547289302 1572591 nifH Nitrogen Nitrogen fixation Desulfovibrio gigas superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 7.988527134 7.987486919 7.952511743 7.251574656 8.058010765 7.843645768 7.922500326 7.934399158 7.822088307 119490677 phoA Stress Phosphate limitation Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 7.355855923 8.309977552 8.322544307 7.943840835 8.355472874 7.712187565 7.91668669 149938357 ChrA Metal Resistance Chromium Parabacteroides distasonis ATCC 8503 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides distasonis; 8.091415642 8.245989738 7.802733493 7.436732777 7.460548014 7.398806255 7.480906303 7.280628416 7.289695456 7.43377868 95116139 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.831412781 8.026777384 7.208518874 7.60613608 7.392401154 7.4122175 7.097376497 6.99758597 7.413381798 163855191 alkK Organic Remediation Others Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 8.112305791 8.150422274 7.300529491 7.292037428 6.901336373 6.548787445 7.541798453 7.230138605 7.182611147 7.432615988 218886473 obgE Stress Radiation stress Desulfovibrio vulgaris str. 'Miyazaki F' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 7.923116172 7.568326709 8.031307438 7.978697481 8.145357315 8.21012997 8.384378576 8.435842065 8.198566543 49531928 sigma_38 Stress Sigma factors Acinetobacter sp. ADP1 7.122561671 7.002019348 6.99712258 6.776483125 7.200655413 6.981075801 7.135920061 88919815 phn Organic Remediation Herbicides related compound Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 7.665379353 7.659133157 7.680244756 7.529777119 8.133614823 7.834118594 7.956572474 8.100772165 7.999727917 17544909 fnr Stress Oxygen stress Ralstonia solanacearum GMI1000 8.013415902 7.810393133 7.649204799 7.708442316 7.714622407 7.936273146 7.270110615 7.345951067 7.936822703 271963879 sigma_70 Stress Sigma factors Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 8.085061207 8.288596042 8.511801336 8.731799946 8.382356399 8.504578287 8.312672535 8.764670785 8.394978934 242208050 endochitinase Carbon cycling Carbon degradation Chitin Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 8.903458805 8.568143994 8.353645948 9.027124453 8.915961285 9.09616281 9.267710416 8.530144439 9.527854814 9.331154959 8.998116297 89055554 rubisco Carbon cycling Carbon fixation Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 8.020636656 8.378801312 8.390496011 8.278204029 7.931813389 7.651413998 7.779692251 8.111911657 254397689 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 8.028774564 8.240447132 8.038873973 8.267130718 8.934584431 8.380761316 8.62289866 8.520448146 8.710716744 148727179 integrase_tyrosine Bacteria phage REPLICATION Aeromonas phage phiO18P order:Caudovirales;family:Myoviridae;genus:P2-like viruses; 8.753103337 8.6160463 8.215871087 8.407906354 8.67286991 8.708542644 8.466161674 8.729082219 8.688201305 8.456209296 8.674740169 21243980 amyA Carbon cycling Carbon degradation Starch Xanthomonas axonopodis pv. citri str. 306 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas axonopodis; 7.403261191 7.403449069 7.079384387 7.239055017 7.006771344 7.899933553 6.982190561 7.328423686 124901123 pap virulence adhesin Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 7.835871828 7.650500599 7.750921297 7.779472846 7.385682487 8.336212559 213406541 phoA Stress Phosphate limitation Schizosaccharomyces japonicus yFS275 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Schizosaccharomycetes;order:Schizosaccharomycetales;family:Schizosaccharomycetaceae;genus:Schizosaccharomyces;species:Schizosaccharomyces japonicus; 7.779843124 7.992114751 7.24378232 7.165042622 7.228348731 7.074551488 7.285726623 7.035406434 6.915486719 229740380 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 8.396521246 8.725075845 8.163388965 8.342590448 7.855954312 8.698659989 7.866622422 8.40579845 8.907880621 87135119 pimF Organic Remediation Aromatics Aromatic carboxylic acid Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 8.923506062 8.920477565 8.317938619 7.887465256 8.303494035 8.414408425 8.081951662 8.468930521 8.237336992 8.017877094 8.376538047 225181100 sigma_24 Stress Sigma factors Dethiobacter alkaliphilus AHT 1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Syntrophomonadaceae;genus:Dethiobacter;species:Dethiobacter alkaliphilus; 7.767879441 8.058179029 7.384619926 7.353113072 6.979511569 6.920892408 6.88275931 28850615 pbrT Metal Resistance Lead Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 7.486121992 7.771853902 7.740874899 7.914283921 8.231143551 8.27086501 8.009981601 8.304898112 85831189 ara Carbon cycling Carbon degradation Hemicellulose Leeuwenhoekiella blandensis MED217 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Leeuwenhoekiella;species:Leeuwenhoekiella blandensis; 7.837284239 8.210899637 7.24950775 7.594536759 7.494489781 7.321869632 7.112742641 7.850265841 7.270931248 7.145298519 7.321440237 255269455 ara Carbon cycling Carbon degradation Hemicellulose Bryantella formatexigens DSM 14469 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;species:Bryantella formatexigens; 8.043363249 8.05092656 8.156006939 7.866821648 7.697112413 8.004483067 7.978185155 8.432873398 8.049511291 76058111 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 9.018123489 9.014336008 9.406693333 9.441273873 9.354646792 9.607949966 9.689708104 9.283359535 9.973877474 9.640880248 9.405035203 151302146 AprA Sulphur adenylylsulfate reductase Desulfovibrio salexigens DSM 2638 7.062453966 7.051033098 193201347 holin_type_2 Bacteria phage LYSIS Enterobacteria phage EcoDS1 order:Caudovirales;family:Podoviridae;genus:T7-like viruses; 7.570171365 7.475062133 7.451735174 7.116580194 7.071672475 7.431181037 260612930 oxyR Stress Oxygen stress Vibrio metschnikovii CIP 69.14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio metschnikovii; 7.884950906 7.879038547 7.770634784 8.260853647 8.410073078 8.140899077 7.920303889 7.452560005 7.960702391 220712781 silC Metal Resistance Silver Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.717459193 7.682294812 7.932407243 7.606935919 7.703540348 8.110730345 7.754069862 7.874147338 94985519 fnr Stress Oxygen stress Deinococcus geothermalis DSM 11300 8.159650858 8.36752866 8.110859544 8.057156899 8.449444179 8.313584284 8.308458853 8.348898295 163792890 pcpB Organic Remediation Herbicides related compound alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 8.025860819 8.11585091 7.836501988 7.705398485 8.088148919 7.825209954 8.21085796 8.400038686 118762397 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 7.525193845 7.873876675 7.879641826 7.562385256 7.954484214 7.690677844 7.77610324 194473818 lysin Bacteria phage LYSIS Morganella phage MmP1 order:Caudovirales;family:Podoviridae;genus:T7-like viruses; 7.189893713 7.310461804 7.361110935 6.885663136 7.113150084 7.625817479 7.767324331 7.116251369 62003551 narG Nitrogen Denitrification uncultured bacterium 8.104200122 8.279565815 7.538145376 7.526048876 7.75800595 7.237585316 7.4802716 7.876933925 7.373951554 7.567990086 7.304565788 10639338 bphD Organic Remediation Aromatics Polycyclic aromatics Thermoplasma acidophilum superkingdom:Archaea;phylum:Euryarchaeota;class:Thermoplasmata;order:Thermoplasmatales;family:Thermoplasmataceae;genus:Thermoplasma; 7.310452337 7.234707685 7.374384148 7.196354093 7.172556596 7.88333708 7.581569587 7.519187525 7.533110648 208009952 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Aliivibrio salmonicida LFI1238 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Aliivibrio salmonicida; 7.870816237 7.96322969 8.04739934 8.340534578 8.051224803 7.689204882 8.1564944 8.233607754 7.959199118 117649506 pimF Organic Remediation Aromatics Aromatic carboxylic acid Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 8.096534596 8.197443302 8.381001881 8.191767539 8.38868291 8.390030186 8.759378858 8.628866938 8.516823416 209874233 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 7.46104249 7.755675928 7.890237907 7.964686038 7.62619799 7.494974356 7.662653838 8.366747621 46202896 SMR_antibiotics Antibiotic resistance transporter Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 8.204899908 8.04383383 7.604782349 7.15156632 7.492614299 7.678724125 7.312392313 7.652038746 7.232535135 7.614565275 7.402172282 121593473 fnr Stress Oxygen stress Acidovorax sp. JS42 7.525162567 7.647259853 7.89166728 7.840226138 7.649669505 8.003256064 7.487522455 7.485058392 7.258315156 167463168 glnA Stress Nitrogen limitation Paenibacillus larvae subsp. larvae BRL-230010 8.113358625 8.419652164 8.108615563 8.177359833 7.738049103 7.968373064 8.708705776 8.223772243 8.5543092 8.455639113 8.569281863 124006204 ChrA Metal Resistance Chromium Microscilla marina ATCC 23134 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Microscilla;species:Microscilla marina; 8.23731329 8.287890364 8.019156254 8.00409721 7.645635128 7.8338758 7.887971223 87281209 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.465898952 8.247557329 8.349431856 8.44407981 8.315547622 8.130068031 8.617200006 8.369033561 8.498506549 8.339965395 8.211471321 112821599 bphA Organic Remediation Aromatics Polycyclic aromatics Sphingomonas sp. KA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.042940664 8.284897765 7.985748039 7.698951316 7.633090991 8.15386346 7.717175436 7.918067941 7.39567101 7.451059773 58261446 katE Stress Oxygen stress Cryptococcus neoformans var. neoformans JEC21 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Tremellomycetes;order:Tremellales;family:Tremellaceae;genus:Filobasidiella;species:Filobasidiella neoformans; 8.459105079 8.512524296 8.367130149 8.088589771 8.317732538 8.199807769 8.482185244 8.261709857 8.146700835 8.530822429 183581527 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Kocuria rhizophila DC2201 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 8.468677848 8.664364681 8.663912356 8.353425028 8.97776341 7.94026117 8.721842893 8.552133844 8.7327993 39995814 SMR_antibiotics Antibiotic resistance transporter Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 8.404546662 8.165087634 8.099903902 7.351669675 7.806876037 7.992384055 7.57937467 8.035817035 7.786782367 7.438425598 7.699579658 206594749 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia solanacearum IPO1609 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 7.50946179 7.987105678 8.023778637 7.758822167 7.841617377 7.691920395 104781163 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 8.112062668 8.327637217 8.794282502 8.492481324 8.226221451 8.181539557 8.540048028 8.544640265 8.463850498 8.308425951 8.361820424 169759305 iro virulence Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.816856449 7.630339275 7.793323433 7.338067911 7.500699137 7.95537284 7.753696665 7.577645426 7.780229596 227495610 amyA Carbon cycling Carbon degradation Starch Actinomyces coleocanis DSM 15436 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces coleocanis; 8.712560493 8.233995067 8.012377609 7.987736558 8.466239597 8.302529031 7.991878459 8.215475639 7.961631341 8.285059881 7.926524233 154087130 grpE Stress Heat shock Parabacteroides merdae ATCC 43184 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides merdae; 7.618140131 7.844901671 8.076495339 8.060464643 7.595596442 7.893596112 7.903538717 7.745172998 7.601504528 154673 ATP_synthase_F1_or_F0 Bioleaching other category Acidithiobacillus ferrooxidans 8.150454339 8.011191539 7.800731531 7.831090713 7.599642262 7.599344574 8.045605992 7.83881444 7.440680981 7.827206895 227077707 narI Stress Oxygen limitation Corynebacterium accolens ATCC 49725 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium accolens; 8.244039424 8.212198706 7.824110356 8.101851014 8.249501013 8.190458737 8.424624385 8.207134078 8.591954184 8.729805919 8.256813595 255536479 SMR_antibiotics Antibiotic resistance transporter Flavobacteriaceae bacterium 3519-10 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae; 7.540755509 7.512573063 7.917227294 8.089090046 7.365106072 8.329309442 7.30178805 7.734278213 7.515837133 212703179 sigma_32 Stress Sigma factors Desulfovibrio piger ATCC 29098 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio piger; 8.890415796 9.076779788 8.509142553 8.733551185 8.819719094 8.305925449 8.782788758 8.366376264 160942368 tutFDG Organic Remediation Aromatics BTEX and related aromatics Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 7.701995806 8.260929503 8.133016268 7.608635978 7.39433258 7.592562663 7.794383227 8.450298595 145216540 arsB Metal Resistance Arsenic Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.261859454 8.216464642 7.364794983 7.917552714 8.017283422 7.997344461 7.868368752 7.936572616 8.001844457 7.889249779 34017154 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.857544733 8.167419646 7.489512849 8.166806899 8.07928333 7.842880398 7.727999982 22449905 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.270107596 7.886819511 7.609320215 8.009160196 8.107286935 8.088264811 8.239072461 7.89289255 7.679146589 63029767 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.717922436 7.566236902 7.360385877 7.358254904 7.43606438 7.416377296 7.843339958 134135686 AceB Carbon cycling Carbon degradation others Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 8.509009436 8.42481364 8.662442759 8.729776124 8.573344368 8.714255501 9.171200174 8.677786678 9.060490201 9.05664905 8.988907943 127511504 cytochrome Energy process Energy process Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 7.440790128 7.482384747 8.054867051 8.264906366 8.025182461 8.204688332 7.978752821 7.851910919 8.225265627 145577158 fnr Stress Oxygen stress Pseudomonas mendocina ymp 7.661277386 8.119142405 8.095724525 7.636738481 8.577404114 7.790805806 7.553030944 7.794680633 99080367 ArsC Metal Resistance Arsenic Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.651237839 7.451308971 7.627777022 7.939471032 7.499722075 8.377915129 7.465489397 7.430125261 7.208505157 192809915 mannanase Carbon cycling Carbon degradation Hemicellulose Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.39632135 7.265421048 7.493957203 7.068532768 7.150662138 7.536728454 7.659830833 7.404725839 50877892 katE Stress Oxygen stress Desulfotalea psychrophila LSv54 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfotalea;species:Desulfotalea psychrophila; 9.131963407 8.657813559 7.867958097 7.935615997 8.462844613 8.437783169 148829707 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Erythrobacter sp. SD-21 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 8.620642205 8.319789118 8.512287906 8.597130902 8.618480233 8.984178047 9.038248369 8.573797076 9.170508809 9.100079452 8.726107525 171989718 hly virulence hemolysin Exiguobacterium sibiricum 255-15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 8.327832485 8.34815531 7.622743754 7.603086051 8.148844209 8.209795027 7.67185832 8.373030564 7.655083068 7.622814919 7.98323223 93358908 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 7.870324616 8.016363937 7.630935553 7.510498736 7.790173969 7.150140708 7.618617436 7.886191544 7.493091725 7.508926599 7.467858135 214043907 pstB Stress Phosphate limitation Roseobacter sp. GAI101 7.839623594 7.87912091 7.592687019 7.493522531 8.236070616 7.762959503 7.474688667 7.393920151 59893244 nosZ Nitrogen Denitrification uncultured forest soil bacterium superkingdom:Bacteria; 7.918713543 8.33557162 8.442036404 7.86014385 8.505890452 7.931386173 8.183511571 8.318414074 8.24308733 260617884 obgE Stress Radiation stress Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 8.148140927 8.112882102 7.932401176 7.416944865 7.320896288 7.245596064 7.445210775 7.518837321 94971780 SMR_antibiotics Antibiotic resistance transporter Acidobacteria bacterium Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 8.173689421 8.031065466 8.124074377 7.658435532 7.523501232 8.287864305 8.248804153 8.199705994 8.191974901 8.126425841 78195183 ChrA Metal Resistance Chromium Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 7.267199163 7.209534631 7.097807338 7.124994737 7.382052909 205374734 ArsC Metal Resistance Arsenic Bacillus coahuilensis m4-4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coahuilensis; 7.277090209 7.069777003 31747729 nif Bioleaching Nitrogen Leptospirillum ferrooxidans 7.9553715 8.354955901 8.469213669 8.560125025 8.566422057 8.24661818 8.91395431 8.480426911 8.620659198 80563492 narG Nitrogen Denitrification uncultured bacterium 7.567983189 7.409370912 7.839003847 7.579595168 7.764901155 7.581549674 7.466052004 121303745 phdCI Organic Remediation Aromatics Polycyclic aromatics Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.287901684 7.884773831 7.399165696 7.598224187 7.479621676 7.200053616 7.026780848 7.268939127 256614885 srt virulence surface protein Lactobacillus crispatus 125-2-CHN superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus crispatus; 8.459369994 8.451568739 7.834393417 7.761838131 7.7303395 7.506146262 7.021006853 7.461751315 7.616818203 7.8048859 157404323 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.881147107 8.534187609 8.372863974 7.928575207 8.07636042 8.149981046 8.637025089 8.366581745 152988208 cytochrome Energy process Energy process Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 7.281195484 7.95413566 7.927726175 8.175088777 7.62677602 7.779284791 7.908740358 7.9056779 116743205 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.573407232 7.647112271 7.662108929 7.354787949 7.463601064 7.854986537 7.998216125 7.667250975 7.674508704 222106253 nmoA Organic Remediation Aromatics Nitoaromatics Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 8.534452756 8.500009676 8.156351682 8.085436435 8.36048488 8.089596532 8.123258228 8.021730369 7.741378029 262395378 iuc virulence aerobactin Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.269228576 8.582705375 7.900875359 7.763928944 7.91779726 7.598072994 7.611324384 7.796832981 8.200828019 28848925 pheA Organic Remediation Aromatics Other aromatics Pseudomonas stutzeri 7.359682239 7.348714568 7.201268555 6.91450987 7.014023285 7.719589882 7.181821212 7.179572053 134293332 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 7.434622209 7.813506183 8.265148851 8.212779689 7.266790096 7.378322295 7.76507497 187603700 mer Metal Resistance Mercury Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 8.242199809 8.230089243 7.750113782 7.72228389 7.675894864 7.426449022 7.678019475 8.029551503 7.72651488 7.638236929 7.626094109 170744255 fnr Stress Oxygen stress Methylobacterium sp. 4-46 7.773596579 7.805259172 8.126810978 7.969825985 8.181733484 8.240277541 7.979540427 7.810577131 256742701 sigma_38 Stress Sigma factors Thiomonas intermedia K12 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas;species:Thiomonas intermedia; 8.302026856 8.550786263 8.033685106 8.014855643 7.760941367 7.80197753 8.161671702 8.174210874 8.176279777 7.93844828 8.121595144 222053802 sigma_32 Stress Sigma factors Geobacter sp. FRC-32 7.5255001 7.679450277 7.882370482 7.743419992 7.511370834 7.627596819 7.860585308 114540800 sox Sulphur Sulphur oxidation Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.761795486 7.978523417 8.238480981 8.266137569 8.142632885 8.077394861 8.264896403 8.300087284 238722014 AceB Carbon cycling Carbon degradation others Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 7.481715013 7.31820679 7.470055412 7.867793733 7.136456231 7.571029766 7.452489451 84390208 ppx Phosphorus Phosphorus utilization Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 7.696850051 7.940839773 7.668979179 7.186924158 7.705093641 7.703498259 7.545707922 7.557131104 7.542493411 229917586 fnr Stress Oxygen stress Exiguobacterium sp. AT1b 7.790659837 8.052536495 7.116034011 7.448579795 7.446674802 7.182734889 7.347580186 7.8380697 7.527609957 7.329155979 7.162296296 159102600 katE Stress Oxygen stress Malassezia globosa CBS 7966 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Exobasidiomycetes;order:Malasseziales;family:Malasseziaceae;genus:Malassezia;species:Malassezia globosa; 7.710722949 7.652662848 7.418858987 7.741670413 7.742223779 7.710362312 7.593373144 225412253 sigma_24 Stress Sigma factors Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 8.111143608 8.010274383 7.407615497 8.041862405 8.190185983 7.877300263 7.624099916 77385837 pstA Stress Phosphate limitation Pseudomonas fluorescens Pf0-1 7.711712605 7.772831267 8.019086655 7.667237678 7.343032828 7.874833693 7.459825528 7.90955786 7.827017109 126742276 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 8.388553828 8.137590615 8.0937844 8.037181283 7.946435125 8.030922194 8.237793007 8.299501899 8.311929661 8.156703889 8.314274396 126628821 glnA Stress Nitrogen limitation Marinobacter sp. ELB17 7.193825539 7.392206286 7.528226397 6.687307563 7.202958587 7.542875234 7.095675732 7.196878296 7.217779566 18645052 BchY other category chlorophyllide reductase uncultured marine proteobacterium superkingdom:Bacteria;phylum:Proteobacteria; 8.077627013 8.061424407 7.697355335 7.739692636 7.737598155 7.977636509 8.032675666 7.885739734 8.309579633 7.835419185 212685984 Arylest Organic Remediation Aromatics Other aromatics Providencia alcalifaciens DSM 30120 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 7.009192777 7.267072373 7.397679981 7.331799719 6.867525875 7.694046533 7.059904629 7.235279209 7.541270158 83767292 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus oryzae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 7.661968568 7.873173017 7.669928628 7.465741949 7.734142886 7.76172529 7.750506123 7.614993228 7.589357164 268324867 pstB Stress Phosphate limitation uncultured archaeon 7.43342429 7.219184294 7.046743462 7.419498187 7.340215223 7.146683841 84668322 phtA Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.576955545 7.340580147 7.607585744 7.082697413 7.191355053 7.084120988 87302476 SmtA Metal Resistance Miscellaneous Synechococcus sp. WH 5701 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.016249399 8.538571145 8.675160847 8.514570863 8.156987471 8.069226554 8.709066783 8.15767759 8.628911202 8.435525795 8.588078833 125745197 mcrA Carbon cycling Methane Methane production uncultured archaeon superkingdom:Archaea; 8.574049559 8.593662813 8.398514218 8.40967427 8.107596522 8.435241387 8.478345718 8.317284134 8.495126172 8.120530398 8.216933139 19915193 ZntA Metal Resistance Zinc Methanosarcina acetivorans C2A 8.275401158 8.274541282 8.479578272 8.269745748 7.941691366 8.033926889 8.095934633 8.362199808 227489377 ahpC Stress Oxygen stress Corynebacterium glucuronolyticum ATCC 51867 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glucuronolyticum; 7.859649333 8.291835636 7.694062427 7.714273723 7.885208745 7.529922541 7.419614244 7.972076669 7.580475745 7.601835316 7.594368843 27657348 pcpE Organic Remediation Herbicides related compound Defluvibacter lusatiensis superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Defluvibacter; 7.474112916 7.593650507 7.740123806 7.369345079 7.50487757 7.684599857 89159560 gyrB other category gyrB Halothermothrix orenii H 168 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Halanaerobiales;family:Halanaerobiaceae;genus:Halothermothrix;species:Halothermothrix orenii; 8.481473754 8.490502717 8.260384546 8.137193973 8.130344209 7.913933986 8.338517926 8.074889383 8.436838918 8.2793459 8.072479053 5453191 nosZ Nitrogen Denitrification Rhodobacter sphaeroides f. sp. denitrificans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 8.231493029 7.836277639 7.710544814 7.850248656 7.775514284 8.153709019 7.728978583 7.471182723 7.52331609 163742619 hrcA Stress Heat shock Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 8.562467478 8.38833616 7.614563484 7.831460074 8.181691141 7.249243851 7.943530355 7.736325732 7.351335012 7.908825766 106769227 amyA Carbon cycling Carbon degradation Starch Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 8.020477606 8.026561804 7.242904516 7.670271718 8.014709516 7.83262668 7.455768063 8.04104603 7.993419895 7.840834289 8.174850763 119377762 glnA Stress Nitrogen limitation Paracoccus denitrificans PD1222 6.93936998 7.344420516 110820994 alkK Organic Remediation Others Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.182443526 8.269629875 7.647682336 7.456325676 7.363263878 8.030790012 7.717214944 8.208017336 7.565535221 7.573697291 7.60983498 90411492 nreB Metal Resistance Nickel Photobacterium profundum 3TCK superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 8.697599387 8.499544279 8.33277732 8.050076069 8.103854622 7.67010272 7.790653986 7.952311863 7.804005986 7.844582297 8.089854798 118031204 cpnC Organic Remediation Other Hydrocarbons Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.924255265 7.759245328 7.738569081 7.723218421 7.18046839 8.040640624 7.796274405 7.717180411 7.967078494 40253032 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.16334371 7.334134294 154294802 AceA Carbon cycling Carbon degradation others Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 7.46338656 7.690777572 7.393879899 7.313412239 7.495166588 7.293348723 7.1279163 7.446704426 70733824 cytochrome Energy process Energy process Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.35895875 8.454453922 7.466856937 7.599363764 7.664729203 8.00963738 7.13439372 7.379356268 7.566289696 7.596486287 74038304 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.956956096 7.5588478 7.562066738 7.209209289 7.383975105 7.954218962 7.521579001 7.156293022 7.324746732 158305232 sigma_70 Stress Sigma factors Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;genus:Acaryochloris;species:Acaryochloris marina; 8.104153347 8.129084767 8.279610243 8.006870184 8.162341502 7.927444877 8.061574805 8.347738105 7.801897368 144906028 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.938218781 7.874959522 7.475216426 7.298153503 7.512916622 7.250325236 7.349288523 7.85203165 7.658637448 7.76682491 7.600156101 78695785 pcc Carbon cycling Carbon fixation Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.31873603 8.629747054 8.666730106 8.646493206 8.55859731 8.729874458 9.200751394 8.77388645 8.847510123 8.499497936 8.694903198 10639412 ABC_transporter_IV Bioleaching other category Thermoplasma acidophilum 7.435068707 7.09145227 7.115661509 6.888150344 7.414107969 83944744 obgE Stress Radiation stress Oceanicaulis alexandrii HTCC2633 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis;species:Oceanicaulis alexandrii; 7.683285016 7.640578327 8.185539285 8.248626675 7.895799602 8.10290452 7.891663447 8.096765104 7.786807589 78513491 pcc Carbon cycling Carbon fixation Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.66525656 7.59771016 7.665369442 7.524920421 7.657793743 89952845 endochitinase Carbon cycling Carbon degradation Chitin Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 8.290473207 8.386373018 7.503869229 7.580165784 7.874583587 8.408238325 7.625348045 8.298199285 7.488449448 7.606902524 7.631017397 239813453 iro virulence Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 8.214401834 8.244755537 7.19454688 7.847507647 7.792016367 7.547024135 8.006630971 7.46227832 7.474761248 7.644766062 229446759 glnA Stress Nitrogen limitation Bacteroides sp. D1 7.686398981 7.673035031 7.75185807 7.654698254 7.696144633 7.375976966 7.497056186 163781576 ahpC Stress Oxygen stress Hydrogenivirga sp. 128-5-R1-1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenivirga; 7.040141651 7.117649576 126233899 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.899201191 8.207406527 8.462693161 7.975476905 8.248567759 8.249155693 7.88124453 8.52246898 7.994963587 84375977 nplT Carbon cycling Carbon degradation Starch Vibrio splendidus 12B01 8.655692855 8.999758851 8.275492051 7.878515316 6.92760065 7.692730875 7.769543773 8.009634168 8.080576587 4887091 cap virulence capsule Escherichia coli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 8.659647842 8.749130105 8.469547046 8.818027461 8.609359015 8.740843342 8.506381806 91710029 ahpC Stress Oxygen stress Methylobacillus flagellatus KT superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 6.89936649 7.125350608 7.083143177 6.827843387 7.220129531 7.463141876 240172033 ureC Nitrogen Ammonification Mycobacterium kansasii ATCC 12478 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 8.253450993 8.272310207 8.171760574 8.160091314 7.907593566 7.794616419 8.106355353 8.158380974 7.960511589 8.034027769 195953985 pstB Stress Phosphate limitation Hydrogenobaculum sp. Y04AAS1 7.453390804 7.795047049 7.134649892 7.91824601 7.521927166 7.372739292 7.844238178 773673 sigma_24 Stress Sigma factors Achromobacter xylosoxidans 7.377339271 7.489223621 7.68935488 7.619304889 7.393724521 7.832599095 7.452182065 7.686846165 7.683097034 229785095 glnA Stress Nitrogen limitation Bifidobacterium angulatum DSM 20098 7.014215098 7.084626783 6.880115639 7.027085078 7.472871695 13661652 vanA Carbon cycling Carbon degradation Others Comamonas testosteroni superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 8.008964092 8.091141382 7.395016537 7.665602699 7.645844729 6.92317272 7.87282808 7.191978185 7.339657022 7.303331957 87282596 pstB Stress Phosphate limitation Synechococcus sp. WH 5701 7.413058817 7.312616197 7.606511984 7.491177131 7.252889776 7.743832688 7.158164144 7.154773217 151360705 AceB Carbon cycling Carbon degradation others Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 7.761365123 7.629988376 8.314836103 8.453181766 8.025599381 8.486762926 7.826810419 7.865188159 8.285788784 133913095 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 7.955158454 8.173422781 7.907047887 8.014817652 8.102178118 8.407049338 8.064479386 8.206407387 7.884117831 88778700 TehB Metal Resistance Tellurium Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 8.167219419 8.87074812 8.052511246 7.611820416 7.419018412 7.200214201 91800536 ppx Phosphorus Phosphorus utilization Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 7.659896069 7.48497201 7.270889106 7.431777242 7.146558753 7.336823632 226093016 pstB Stress Phosphate limitation Brevibacillus brevis NBRC 100599 7.251552428 7.132895612 7.195488096 6.731839756 6.767301778 7.501713422 7.079150369 6.945223057 114550009 xylA Carbon cycling Carbon degradation Hemicellulose alpha proteobacterium HTCC2255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.06815034 7.217279155 7.370098921 7.120145875 7.276983021 33598203 bphA Organic Remediation Aromatics Polycyclic aromatics Bordetella parapertussis 12822 8.517934282 8.723130658 8.229090629 8.214871995 8.046232206 7.56063961 7.70279012 8.057945331 7.958521584 8.204539012 198253209 SMR_antibiotics Antibiotic resistance transporter Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 8.334765182 8.492728524 7.435953654 7.950075092 7.954059782 7.561735223 7.552020918 7.822647463 7.752681533 163741367 glnA Stress Nitrogen limitation Phaeobacter gallaeciensis 2.10 7.705846714 7.331925218 7.338520705 6.821169983 7.547692321 7.641692386 7.652438645 7.415205751 7.551297934 162449128 sigma_70 Stress Sigma factors Sorangium cellulosum 'So ce 56' 8.844816587 8.820427886 7.890839337 7.93687623 8.140147535 8.807312114 8.376286909 8.501195621 8.059253325 8.230592132 8.06266659 194347636 AceA Carbon cycling Carbon degradation others Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 8.263497881 8.194312705 8.101519855 8.043931688 7.990630493 7.779401062 8.07544976 8.509986525 8.172566814 8.160599067 8.068237262 91977216 nhh Organic Remediation Aromatics Nitoaromatics Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.107586379 8.441451149 8.494612492 8.17252481 8.509093748 8.420476905 8.42631526 8.361212904 8.127964161 28272493 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Lactobacillus plantarum WCFS1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus plantarum; 7.928519675 8.280005135 7.441440053 7.270692106 7.345811211 7.404892466 6.963804661 7.5777157 120326350 phoB Stress Phosphate limitation Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 7.806497402 7.792250851 8.042389724 8.097322692 7.925195322 8.356527827 7.859755663 7.875788437 8.220798648 88607549 dnaK Stress Heat shock Anaplasma phagocytophilum HZ 8.463820027 8.338180755 7.988794563 7.929750401 7.616678713 7.26438844 7.191469991 8.064082692 7.475631812 7.810928659 219563134 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 8.018287823 8.201136681 8.117650557 7.634866241 7.700731135 7.934521638 7.873345444 7.86911809 7.564387358 7.68807128 68568553 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Sulfolobus acidocaldarius DSM 639 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus;species:Sulfolobus acidocaldarius; 7.223694479 7.369164075 6.853796552 6.852081091 6.669560638 7.638929233 7.309503233 6.950343523 7.226385707 112463327 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.004269423 8.220146405 7.515118811 7.507462323 8.423033416 8.71951848 8.432823503 8.24008191 8.020664758 8.293380839 8.486631375 167839305 silC Metal Resistance Silver Burkholderia thailandensis MSMB43 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 7.606777559 7.75231113 8.31261652 8.313345512 7.884286163 8.209767027 8.075762194 8.077950338 8.306710179 151574904 atzB Organic Remediation Herbicides related compound Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 7.510802926 7.493480281 7.577976221 7.270702837 7.887141391 7.910622764 7.791682384 7.625708949 8.017380181 166857760 tfdA Organic Remediation Aromatics Chlorinated aromatics Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.908181973 7.803542866 8.017439565 7.791979053 8.45594484 7.984741812 7.715651267 7.70991842 8.054184299 160917729 narG Nitrogen Denitrification uncultured bacterium 7.851884461 8.056984931 8.430405591 8.42614508 8.535782204 8.250692545 8.484682068 8.534506784 8.197243424 58416302 CopA Metal Resistance Copper Achromobacter xylosoxidans 7.877149718 7.842086069 7.727912888 7.786514635 8.039135927 8.044160793 7.93699696 7.655204648 7.97621497 260848180 fnr Stress Oxygen stress Mitsuokella multacida DSM 20544 8.424259031 8.324523237 8.172755961 8.368627101 8.769043665 8.349279376 8.508558056 8.096595676 32445083 gdh Nitrogen Ammonification Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 7.154456897 6.753628692 7.364565553 7.299214676 6.670655529 7.094114555 7.530341717 7.256565497 71847125 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 8.647879532 8.348526431 8.716304751 8.195469086 8.013828715 8.701130373 8.538343243 8.50516571 8.090804348 7.715866227 209522006 sigma_24 Stress Sigma factors Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.445079565 7.507008411 7.082376586 6.932149724 7.500592082 7.42286517 7.655150753 7.284227877 7.378187499 119775959 obgE Stress Radiation stress Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 7.173030298 7.588867366 7.530465335 6.92812584 7.050218619 7.631520563 7.586431623 87309070 groEL Stress Heat shock Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 8.192880032 8.019014826 7.402082642 7.795597583 7.914671603 8.099245714 8.042186795 8.365616911 7.892231766 261857003 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.318933326 7.362189618 7.582698298 7.77923865 7.43256744 7.445405667 7.467197159 7.859553927 88780010 ppx Phosphorus Phosphorus utilization Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 8.251549345 8.700271838 8.611574922 8.607228206 8.349720758 8.628269057 9.204553143 8.68871139 8.838753214 8.689797895 8.650923686 159185940 NirB Nitrogen Assimilatory N reduction Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.324724887 8.358205432 8.010135056 7.908641257 7.954886564 8.495706659 8.04638662 8.541046147 7.692596401 7.848733235 7.425890591 148658243 pstB Stress Phosphate limitation Roseiflexus sp. RS-1 7.479824598 7.46055822 7.430736568 7.348298546 7.222777969 7.645763674 7.409967069 7.518087543 123989169 sigma_24 Stress Sigma factors Microscilla marina ATCC 23134 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Microscilla;species:Microscilla marina; 8.271822593 8.627732686 8.024590973 7.894351292 8.293704408 8.322827336 8.158168071 8.449971457 7.933795017 8.073108416 8.087087466 76058226 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.18484336 7.492358592 7.353285223 7.189659611 7.335281417 7.247558709 7.475751613 7.738878794 93352800 gyrB other category gyrB Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 7.787637278 7.815171471 7.7634615 8.096605074 7.925071341 8.018001284 8.015251245 7.899497118 7.849747843 119376365 pheA Organic Remediation Aromatics Other aromatics Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.132391239 8.079937881 7.546622395 7.628331828 7.235751166 7.410760506 7.72869769 7.248355723 7.363332527 209536766 sigma_24 Stress Sigma factors Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.061522154 8.163574564 7.987084615 7.619402404 8.389581609 8.300718656 7.820407217 7.831110717 8.13154002 91788366 ChrA Metal Resistance Chromium Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 8.602232563 8.44066574 7.857633888 7.602217305 8.00352988 8.246266025 8.283479362 8.12841753 8.571392074 8.149404689 8.188381406 261377614 sigma_70 Stress Sigma factors Neisseria cinerea ATCC 14685 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria cinerea; 7.849553416 7.909766631 8.195272319 8.069591142 8.337178088 8.363155624 8.617352164 8.403168173 28542633 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.012574213 8.306933621 7.389541435 7.682381524 8.068952306 6.971943587 8.049682444 7.353494231 7.136494712 7.527540118 2764913 single_strand_annealing_protein Bacteria phage REPLICATION Bacillus phage SPP1 order:Caudovirales;family:Siphoviridae;genus:Lambda-like viruses; 8.226411263 8.334731389 7.944294624 7.672838742 7.68403444 7.684958036 7.782798367 8.066772106 7.80336395 7.590100361 7.804307837 38906705 chnC Organic Remediation Other Hydrocarbons Rhodococcus sp. TK6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7.52268808 7.610364074 7.256873845 6.746791348 7.359133774 7.824615225 7.662308196 7.510170062 7.265867709 225173297 sigma_70 Stress Sigma factors Desulfonatronospira thiodismutans ASO3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfonatronospira;species:Desulfonatronospira thiodismutans; 8.538211701 8.198848309 8.3100063 8.535874572 8.50788803 8.472544977 8.452096366 8.653114894 8.517552402 8.683755772 8.51490932 262336687 oxyR Stress Oxygen stress Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.178598353 7.226223094 6.931492912 7.344481144 7.168494099 6.914799274 187478859 SMR_antibiotics Antibiotic resistance transporter Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 8.187332454 8.483129908 7.74125652 7.768334278 7.808688093 7.968798233 7.682115448 7.972818544 7.746273074 7.656200032 7.667574309 126734156 BchY other category chlorophyllide reductase Roseobacter sp. CCS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.016483517 8.24720075 7.931305637 7.773342575 7.626110763 7.874400197 7.755287407 8.236460528 7.925299354 7.815490993 8.046443667 76781914 bphF1 Organic Remediation Aromatics Polycyclic aromatics Alcaligenes sp. O-1 7.540980976 7.706841431 8.020506476 8.037201308 7.675351265 8.308238531 7.640265264 7.724222855 7.897224128 85826686 mer Metal Resistance Mercury Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.874392243 7.5962133 7.555385127 7.630050218 7.437766675 7.805827834 7.903393472 7.909267723 7.227772072 169733248 xylA Carbon cycling Carbon degradation Hemicellulose Orpinomyces sp. ukk1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Neocallimastigomycota;class:Neocallimastigomycetes;order:Neocallimastigales;family:Neocallimastigaceae;genus:Orpinomyces; 7.183145982 7.09789004 7.507874916 7.780329824 7.098777142 7.265022416 7.252223191 7.458427074 119876377 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 8.130387636 8.098318585 7.837972976 8.167999597 8.559951062 8.566567072 8.238235017 7.97533085 8.167463026 93356634 nmoA Organic Remediation Aromatics Nitoaromatics Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.241763823 8.189172538 8.633171717 8.887554368 8.835947137 8.326827095 8.961953699 8.276634623 8.888453841 8.714477771 8.713976787 109290253 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.371937415 8.297684236 8.097197274 8.253016166 8.575567543 8.554850222 8.464970853 8.413406124 7.87636874 69151949 ppx Phosphorus Phosphorus utilization Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.162681106 8.041510924 7.773198218 7.617325813 8.19850878 7.844079116 8.082004471 7.907840334 8.078300204 30180441 merT Metal Resistance Mercury Nitrosomonas europaea ATCC 19718 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas europaea; 7.463706429 7.581562096 7.089606461 7.518365601 7.594107361 7.4951995 7.629311368 167359704 TehB Metal Resistance Tellurium Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.257763921 7.101499111 6.687619022 7.270487066 187929647 sigma_24 Stress Sigma factors Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.202309756 8.211194035 8.651955073 8.93381133 8.639818337 8.77766646 8.519722471 8.395564847 8.574934113 94422635 ppx Phosphorus Phosphorus utilization Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 7.92920922 8.115893384 7.464130609 8.314051535 8.181410111 8.421829007 8.386702934 8.295536683 8.348340465 8.137546997 8.093731298 169760236 TerC Metal Resistance Tellurium Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.262787926 8.217133046 8.215433299 7.903779611 7.839172895 8.048161099 7.815743109 8.206841391 8.124829339 7.732870197 7.93269758 13476984 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 8.111194858 8.22966254 8.053498612 8.050338438 8.380791152 8.35239195 8.088466777 8.047516486 84787703 linC Organic Remediation Pesticides related compound Erythrobacter litoralis HTCC2594 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 8.394201099 8.32977873 7.843342615 7.90366107 7.695054779 7.811653939 7.812362852 8.246056243 8.237591924 8.022036393 88807325 endochitinase Carbon cycling Carbon degradation Chitin Synechococcus sp. WH 7805 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.194038152 8.07448139 6.863317379 7.727574746 251755169 type_III_secretion virulence secretion Pectobacterium carotovorum subsp. carotovorum PC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 7.133492479 7.389572428 7.796504646 7.558715083 7.385031926 7.798599488 7.392862563 7.500972183 7.405938133 188022950 dmsA Organic Remediation Others Providencia stuartii ATCC 25827 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia stuartii; 8.008672004 8.047205212 7.890965642 7.738147517 7.923241837 7.724473536 8.271195935 8.032701059 8.176430558 8.189652549 7.777965572 183600889 narJ Stress Oxygen limitation Providencia stuartii ATCC 25827 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia stuartii; 7.726597514 8.029907069 8.164519719 7.810072731 8.481964313 7.829585181 7.839800091 7.860195489 7.839878053 71558620 nmoA Organic Remediation Aromatics Nitoaromatics Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 8.303107117 8.528050898 8.061955476 8.292691663 7.936440881 8.022924551 7.947675474 8.397582767 8.008893548 7.924634773 7.897623037 145273944 pstA Stress Phosphate limitation Haemophilus influenzae 22.4-21 7.445937492 7.517750288 219965750 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.494082139 7.491877817 7.366841177 7.800752732 7.24900916 7.462110426 89896204 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 8.285314983 8.593120098 7.61522787 7.632281848 7.61723726 7.484341076 7.086950132 7.964120152 7.76098299 7.964752014 66047196 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 7.655932022 7.51198504 7.500811314 7.594480234 7.341135923 8.15557785 7.582049274 7.256118276 7.589756257 238854588 pstA Stress Phosphate limitation Lactobacillus jensenii 269-3 7.280144143 6.918838745 27363491 B_lactamase_A Antibiotic resistance Beta-lactamases Vibrio vulnificus CMCP6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 7.017842317 6.935323497 254489265 grpE Stress Heat shock Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.148873591 8.281760486 7.693878994 7.508823104 7.59909918 7.563929495 7.33362797 8.005577068 7.385500628 7.383444925 7.442629093 46307831 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.180657558 8.291905664 8.427432874 7.848720316 8.530860024 8.180583733 8.150153058 8.530772999 8.166745315 197787179 ArsC Metal Resistance Arsenic Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 7.923463356 8.302127452 7.259845334 7.199975095 7.402725054 7.2568944 6.691784321 7.740762302 7.139515189 7.037296364 7.325812559 170658760 iro virulence Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 8.369446343 8.352473499 8.185886743 8.157441006 7.720429299 7.696966017 8.471591017 8.199379608 8.122583115 8.158709109 8.031812053 190699411 ara Carbon cycling Carbon degradation Hemicellulose Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.339755834 8.321014422 8.142711929 7.88394061 7.496630643 7.933295022 7.968875695 8.178904755 7.763678573 7.769328925 7.704046158 259169472 clpC Stress Protein stress Lactobacillus antri DSM 16041 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus antri; 7.441126811 7.426761436 7.41457455 7.450890757 7.533401925 7.541059849 7.335114983 7.164193427 7.216634827 116617708 pstB Stress Phosphate limitation Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 7.748672496 7.556548022 7.50058283 7.272403841 7.709178182 7.641372571 7.437328054 7.508737505 7.704736137 91799710 fnr Stress Oxygen stress Nitrobacter hamburgensis X14 8.220683665 8.649569603 8.784455281 8.430455482 8.346047527 8.698005914 8.746983746 8.400326918 8.790135783 8.556249082 8.435506975 197932142 cah Organic Remediation Others Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 8.042462858 8.324781371 7.982129211 7.733655693 7.559027862 7.44159873 7.471940089 8.052911806 7.516451843 7.461665364 7.631925811 255707474 nirS Nitrogen Denitrification uncultured bacterium 7.476592732 7.697126005 7.036307871 7.208328498 90416954 MATE_antibiotic Antibiotic resistance transporter marine gamma proteobacterium HTCC2207 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.969393392 7.803369919 7.7718426 7.935016392 7.584251259 7.886858437 7.449891422 7.566597764 7.984074067 186467555 mer Metal Resistance Mercury Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 7.853113693 8.414479053 7.739246058 7.675745441 8.114708519 8.051775773 8.228563278 8.121813349 7.902104449 161986248 pstC Stress Phosphate limitation Acholeplasma laidlawii PG-8A superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Acholeplasmatales;family:Acholeplasmataceae;genus:Acholeplasma;species:Acholeplasma laidlawii; 8.237045084 8.435308113 7.913945852 7.476885651 7.647553498 7.479913737 7.609972469 7.533750592 213023947 dmsA Organic Remediation Others Salmonella enterica subsp. enterica serovar Typhi str. 404ty superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 7.436936256 7.255133971 7.329070826 6.923386487 6.94490964 7.50231251 7.13247883 7.47674322 27802969 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia sp. JS705 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 8.315296382 8.323709565 8.045687685 7.863691441 8.433664099 8.1125893 8.253919113 8.096049923 8.350959337 92112096 alkK Organic Remediation Others Azoarcus communis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 7.948909699 7.978381549 8.122507278 8.296459676 8.188700648 8.220263637 8.213945646 7.944083293 86141772 fnr Stress Oxygen stress Leeuwenhoekiella blandensis MED217 7.448610409 7.676140449 7.384496451 7.251926795 7.176991936 7.924391675 7.310996616 7.181070108 172040505 dmsA Organic Remediation Others Corynebacterium urealyticum DSM 7109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium urealyticum; 8.119289042 8.164538041 7.982539816 7.973064782 8.137172358 7.937689206 8.096944961 8.231297282 7.668774359 78697564 atzA Organic Remediation Herbicides related compound Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.939050283 8.201215889 7.640239886 7.567413106 7.36735336 7.249337388 7.280027292 7.654776602 7.248257467 7.051355495 157804846 APS_AprA Sulphur adenylylsulfate reductase Rhabdochromatium marinum superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rhabdochromatium; 8.641986696 8.569608933 8.1452152 7.950716426 7.472676638 8.141556735 7.985920559 8.503020447 7.904057981 8.078985589 7.885461198 115422867 nagG Organic Remediation Aromatics Aromatic carboxylic acid Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 7.585529353 8.094833878 8.183119496 8.388036095 8.02332007 8.301896264 8.108837617 8.163709391 8.097798338 195952511 glnA Stress Nitrogen limitation Hydrogenobaculum sp. Y04AAS1 7.972837964 8.074828106 7.392706925 6.880815856 7.081125403 7.0141103 7.387137427 7.381281538 88812717 TerC Metal Resistance Tellurium Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 8.009404714 8.195639999 8.349148442 8.632109996 8.163963129 8.51728782 8.457091683 8.778042679 8.67588899 196188520 clpC Stress Protein stress Synechococcus sp. PCC 7335 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.528898715 7.615931474 7.487869816 7.09565162 7.768289324 7.791438401 7.673361986 7.540084858 7.583126389 118016968 proO Organic Remediation Aromatics Other aromatics Serratia proteamaculans 568 7.985060112 8.308784638 7.527005814 7.50902248 7.377715338 6.86736425 7.857363989 7.308175086 7.280796997 29652646 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.338480193 8.563822886 7.950732389 8.167784276 7.882760441 7.930525564 8.264416612 8.073644246 7.998089416 8.187884599 254381924 ahpC Stress Oxygen stress Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 6.91450987 7.559796289 153010026 dehH109 Organic Remediation Chlorinated solvents Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 7.356931877 7.502802188 7.617514144 7.582281547 7.452549307 7.392341679 7.650053929 8.147956541 46115708 nagG Organic Remediation Aromatics Aromatic carboxylic acid Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 6.944412349 7.213236085 6.995631311 7.440208313 183176825 alkB Organic Remediation Other Hydrocarbons Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 7.939074337 8.087902473 7.63164694 7.590183363 7.627684278 7.245930273 7.501024587 7.802487765 7.823698721 7.385542676 184195565 ChrA Metal Resistance Chromium Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.353530194 8.172218125 8.562494293 8.496063103 8.3522758 8.207184431 8.766616037 8.28598153 8.470573904 8.397534438 8.555076602 83017297 gyrB other category gyrB Microbulbifer elongatus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Microbulbifer; 7.68048173 7.634586127 7.356151878 7.736782609 7.396143376 7.731679055 7.598050073 7.583538553 7.664520977 17935051 ppk Phosphorus Phosphorus utilization Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.662826173 8.059663399 8.196275973 7.997909276 7.606355696 8.295317089 7.822395013 7.825655749 7.701067927 197210235 CODH Carbon cycling Carbon fixation uncultured bacterium 7.600001895 7.581560157 7.356429661 7.324611466 7.374858228 7.591306254 7.568302487 7.248937971 7.18877017 145609990 AceB Carbon cycling Carbon degradation others Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 8.091529395 8.306526356 7.833204707 8.176240422 7.553558605 7.610939042 8.23848366 7.25754293 7.164692666 7.547989134 167950131 pstB Stress Phosphate limitation Endoriftia persephone 'Hot96_1+Hot96_2' 7.904194313 7.799252661 7.573970174 7.191334028 7.449338927 7.966508559 7.299487604 7.541945435 7.364475012 226833473 pstC Stress Phosphate limitation Actinomyces urogenitalis DSM 15434 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces urogenitalis; 7.194111449 7.64809516 7.440716621 7.412032079 7.255086967 7.149257499 7.137591699 7.455515489 124005550 pcc Carbon cycling Carbon fixation Microscilla marina ATCC 23134 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Microscilla;species:Microscilla marina; 7.338630673 7.148985254 7.033632622 6.93279985 7.020705596 196113406 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 7.39092636 7.687524402 7.98038973 7.370209861 7.510041987 7.85264103 7.558368996 7.753049514 84786281 obgE Stress Radiation stress Erythrobacter litoralis HTCC2594 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 8.624406433 8.52320008 8.381547 8.351852429 8.468354827 8.006967853 8.55266812 7.940057136 8.044571886 8.580467273 222447700 amyA Carbon cycling Carbon degradation Starch Chloroflexus sp. Y-400-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus; 8.28602186 8.226885207 7.698312442 7.897449953 7.774054444 7.755082827 7.815306957 8.134560628 7.943822732 7.951897347 7.844317786 206567812 ABC_antibiotic_transporter Antibiotic resistance transporter Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 7.220791747 7.234718909 7.379516806 7.297191745 7.302437878 7.493503355 7.441319092 7.307000205 260455602 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 8.724638812 8.600426775 8.308367893 8.744040385 8.684735079 8.533486339 8.792608427 8.69376165 8.333983342 119897684 pstB Stress Phosphate limitation Azoarcus sp. BH72 7.778258274 7.432565869 7.636697541 7.103055521 7.541658295 7.735011251 7.513068944 7.317879227 7.59353645 29609076 nmoA Organic Remediation Aromatics Nitoaromatics Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 7.865608135 7.329804676 7.7253726 7.922324759 7.559841423 7.913973304 7.62904294 7.355645567 7.171166894 150008479 tutFDG Organic Remediation Aromatics BTEX and related aromatics Parabacteroides distasonis ATCC 8503 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides distasonis; 7.408596406 7.396300236 7.383652298 7.608707208 7.382836889 7.656552327 7.105813316 7.197553029 7.2485343 133913727 pimF Organic Remediation Aromatics Aromatic carboxylic acid Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 7.770250435 7.647117325 8.066274004 8.339700197 7.735402587 8.54504359 7.680121069 7.733942223 7.536538737 82568646 BADH Organic Remediation Aromatics Other aromatics Rhodococcus erythropolis 7.688394838 7.449340865 7.742704358 7.544099908 7.38482168 148501955 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.592197258 8.420461254 7.634508278 8.039728483 8.055929779 8.381357195 7.889326571 7.841712275 8.150685816 157678996 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.185714864 8.478312956 7.62938589 7.70139523 7.58172937 7.603798649 7.818722218 7.84536507 55847413 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 8.112415984 7.925544366 8.249473791 8.367383742 8.074601071 8.13338154 7.738254058 7.771653171 7.845865589 254224214 endochitinase Carbon cycling Carbon degradation Chitin Vibrio cholerae RC385 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 8.129542412 7.805910549 7.900183859 8.472799544 8.166993584 8.352099683 8.074304636 7.835760356 94309707 phn Organic Remediation Herbicides related compound Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.12298869 8.321832258 8.757266361 8.968528533 8.548087504 8.544596907 8.686762311 8.728677256 8.898476192 218440256 ChrA Metal Resistance Chromium Cyanothece sp. PCC 7424 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.073928931 8.447676437 7.817309197 7.730560449 7.492622366 7.249010034 7.214269208 7.748406154 7.353677318 7.599748869 7.657472934 226318516 gyrB other category gyrB Deinococcus deserti VCD115 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 7.139883567 7.004994511 7.037040068 6.939257688 7.390951543 260170751 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Bacteroides sp. D2 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 7.916064816 8.292135303 7.320439014 7.213508434 7.423482275 7.523995904 6.94932315 7.328459058 7.138547723 7.132284337 7.173144849 226227308 obgE Stress Radiation stress Gemmatimonas aurantiaca T-27 superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 8.494941493 8.313301243 8.086980996 8.512704856 8.479004771 8.436266687 8.537356857 8.648551675 8.085032323 146305089 type_III_secretion virulence secretion Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 7.939987803 7.512232239 7.070990427 7.552398014 7.448902251 7.487288883 7.736471544 7.420244009 123965849 rubisco Carbon cycling Carbon fixation Prochlorococcus marinus str. MIT 9515 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 7.621232057 7.706856579 7.649070592 148554936 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.218065691 8.297818678 8.113866748 8.036001634 7.437115902 8.0996782 229468876 amyA Carbon cycling Carbon degradation Starch Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 7.491035359 7.504000822 257473835 fnr Stress Oxygen stress Eggerthella lenta DSM 2243 7.414073149 7.352521197 7.330680344 7.006443517 7.493614326 134094796 CueO Metal Resistance Copper Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 7.577417635 7.326790058 7.474536583 7.262811165 7.114063071 7.820589572 126105509 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.546918987 7.417648849 7.789381204 7.567166556 7.233098922 7.478770087 7.618421211 7.544475735 84710004 TerZ Metal Resistance Tellurium Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 7.913442308 7.895983111 7.084629031 7.332623179 7.210104032 7.014074029 7.03933118 7.443725841 150956737 HcaACD Organic Remediation Aromatics Aromatic carboxylic acid Klebsiella pneumoniae subsp. pneumoniae MGH 78578 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 8.368404061 8.503491145 7.662476805 7.761778852 7.912987145 8.049917748 7.585210595 8.405282563 7.861384529 7.777829541 7.985601173 149806911 sigma_70 Stress Sigma factors Moritella sp. PE36 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Moritellaceae;genus:Moritella; 7.95431489 8.028943872 7.535145669 7.110076382 163811721 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 8.176106106 8.606216068 8.004445005 8.019227019 7.882253046 7.991803884 7.890773679 8.054544108 8.036084275 7.910060291 7.88822227 18143723 cda Carbon cycling Carbon degradation Starch Clostridium perfringens str. 13 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium perfringens; 7.298066471 7.182200078 7.348890579 7.119258899 7.479595644 7.139307329 7.0163964 7.417470345 118735494 nifH Nitrogen Nitrogen fixation Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 7.403082862 7.361225124 7.305748269 7.185871666 6.949261226 7.793553474 229610703 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.291325584 7.378196946 7.529451318 7.622907935 7.954595018 36787391 ZntA Metal Resistance Zinc Photorhabdus luminescens subsp. laumondii TTO1 7.391896317 7.517581917 7.566355958 8.161185757 7.412584104 7.614489671 7.878503286 239796572 sigma_32 Stress Sigma factors Desulfovibrio magneticus RS-1 7.712152378 8.270791532 7.327790354 7.630461265 7.498717472 7.396111184 8.014692106 7.781641671 8.026189355 7.650075114 7.851924721 158514512 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.344876521 7.232908129 7.760771584 7.745936494 7.318237482 7.750736219 7.454660501 7.518414498 7.767929418 56475544 fnr Stress Oxygen stress Aromatoleum aromaticum EbN1 8.10322498 7.793632859 7.710740046 8.126459921 8.418103282 8.238823824 7.923680464 8.079905054 213951064 katE Stress Oxygen stress Corynebacterium amycolatum SK46 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium amycolatum; 7.706286448 8.066874772 7.526742717 7.60863172 7.4973387 6.995832623 7.374681191 7.767363928 7.391952624 7.246050557 7.256453896 66351664 nhh Organic Remediation Aromatics Nitoaromatics Agrobacterium tumefaciens superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 8.30623249 8.355464792 7.779117134 7.893265614 8.171066124 8.203670332 7.724656649 8.240097182 7.833479788 7.762522403 8.158797806 28852351 HBH Organic Remediation Aromatics BTEX and related aromatics Pseudomonas syringae pv. tomato str. DC3000 7.088323106 7.276152165 7.299239752 7.091842593 7.330529623 7.302968405 7.374018871 7.308592489 7.60067987 15824379 mauAB Organic Remediation Herbicides related compound Methylophaga thalassica superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Methylophaga; 8.00511445 7.718542551 7.641482585 7.672539333 7.553504069 7.835945766 7.660592343 7.611096492 7.737624683 84499725 sigma_32 Stress Sigma factors Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 7.992314163 7.471226015 7.561147533 7.700797929 7.489493016 7.972642928 7.546393847 7.493895548 7.407999671 154940273 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.37054032 7.431490705 7.406996454 7.266609764 7.506482276 7.220455131 7.51407262 229311278 glnR Stress Nitrogen limitation Listeria grayi DSM 20601 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria grayi; 7.420494318 7.340615776 7.346014617 7.780384323 7.668596681 7.51198372 7.600580762 3115395 pcpB Organic Remediation Herbicides related compound Sphingomonas sp. UG30 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 7.651991728 7.789384829 8.040423065 8.091992862 7.91623731 8.07132937 7.730502596 7.783666833 8.020123002 114706389 glnA Stress Nitrogen limitation Fulvimarina pelagi HTCC2506 7.838158185 8.070389285 8.065641325 7.525608666 7.732817941 7.441954821 7.904314264 7.653282493 124110930 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 7.916329814 8.000420087 7.747307198 7.544925871 7.375448808 7.465788474 7.078925833 7.78947529 7.415604145 7.476129838 7.560028179 160899776 katE Stress Oxygen stress Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.42539502 7.498943239 8.043124215 7.527250374 8.296528072 7.721339474 7.465644332 7.830183859 197118264 cytochrome Energy process Energy process Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 8.15347919 7.385287614 8.395294844 8.641342846 8.337626185 8.346441415 8.198289 8.389760349 8.30752841 169793646 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.960723902 8.176669333 8.032905539 8.079851232 7.845306162 7.762933561 7.900728639 8.100214584 8.207022511 8.069761808 7.717201451 93006832 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Psychrobacter cryohalolentis K5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter cryohalolentis; 7.817581533 8.247254811 7.278568075 7.238189776 154508246 gyrB other category gyrB Actinomyces odontolyticus ATCC 17982 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces odontolyticus; 7.418051306 7.229482365 7.545811367 7.241677589 6.957186523 7.825732541 6.937162999 6.968140017 7.374864394 77974634 ppx Phosphorus Phosphorus utilization Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 8.185893697 8.136782403 7.851068759 7.660325934 7.662624964 7.694497819 8.071531751 7.861019574 8.106325223 8.074048176 8.097173344 56479032 narG Nitrogen Denitrification Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 8.010336007 8.169201422 8.156323292 7.704871632 8.226501754 8.178550224 8.197538055 8.531874425 8.257661255 33334341 nifH Nitrogen Nitrogen fixation Leptospirillum ferrooxidans superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 7.895845551 8.077623158 7.826058228 7.445498566 7.535860942 7.444172567 7.296771714 7.75238956 7.365978347 7.385005426 7.421377569 78060229 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.927541346 8.137156463 7.715310317 7.749994798 8.118596058 7.916621302 7.585767746 8.113678983 7.648123638 7.915810034 7.559733684 120322928 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 8.099809743 8.232669215 7.46743698 7.548053569 7.716289277 7.718849811 7.561386982 7.583693031 7.629057187 7.432709788 16304105 ppk Phosphorus Phosphorus utilization Aphanizomenon baltica superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Aphanizomenon; 7.644843361 7.586358222 7.134572326 7.231603192 7.219516631 7.453303709 7.558505764 6.970138649 7.367093245 108805255 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 7.851646828 8.035389082 8.202609872 7.919938314 7.915112426 8.210628651 7.813943485 8.136316656 7.944195722 92089946 FTHFS Carbon cycling Acetogenesis Lactobacillus reuteri 100-23 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus reuteri; 7.287628935 7.089264636 6.956843799 7.04961439 7.31850782 125998101 Arylest Organic Remediation Aromatics Other aromatics Shewanella baltica OS155 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 7.97890981 8.043197946 7.398294904 7.588818401 7.345821904 6.816530976 6.942894165 7.466809435 7.25828162 7.054680039 7.140150047 212704750 ppx Phosphorus Phosphorus utilization Desulfovibrio piger ATCC 29098 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio piger; 7.466992386 7.424563254 7.586605599 7.714970698 6.903623213 7.130591055 7.42683143 70988747 ara_fungi Carbon cycling Carbon degradation Hemicellulose Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 7.477372864 7.796253498 7.915441082 7.673144439 7.694118072 7.984686335 7.976562088 8.143181329 8.306225526 239521920 glnA Stress Nitrogen limitation Clostridiales bacterium 1_7_47_FAA 7.439261459 7.508028996 38224496 gyrB other category gyrB Fusobacterium varium superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteria;order:Fusobacteriales;family:Fusobacteriaceae;genus:Fusobacterium; 7.80728729 8.003858103 256832406 SMR_antibiotics Antibiotic resistance transporter Jonesia denitrificans DSM 20603 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 8.341730677 8.674949681 7.678463386 7.896608663 7.916695329 8.072787684 8.13881705 7.860700255 7.866455903 7.804999236 66045704 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 7.327369522 6.951024421 7.463254781 7.118020149 7.427978027 160429074 mannanase Carbon cycling Carbon degradation Hemicellulose Clostridium phytofermentans ISDg superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium phytofermentans; 7.914134062 8.341293778 7.174288289 7.505074871 7.219574016 6.899516964 7.57575682 7.164165622 7.413007382 76577386 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.327591254 8.513445807 8.419461593 8.346777855 8.771635575 8.348957046 8.702514159 8.801428726 8.533310108 126708734 nagG Organic Remediation Aromatics Aromatic carboxylic acid Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 7.323523302 7.189669163 7.402263762 7.427414744 7.402308773 225171965 dsrB Sulphur sulfite reductase Desulfonatronospira thiodismutans ASO3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfonatronospira;species:Desulfonatronospira thiodismutans; 7.271229753 7.242462214 7.293210116 7.33884868 7.103677354 83577128 sigma_70 Stress Sigma factors Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 7.736206269 7.931851842 7.794518549 7.831056763 8.134074124 8.035417097 8.190044612 8.013772593 89056176 Arylest Organic Remediation Aromatics Other aromatics Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 7.89428473 7.73699808 7.703470761 8.327344949 8.045281391 8.388072764 8.111259604 8.283809947 126630268 glnA Stress Nitrogen limitation Marinobacter sp. ELB17 8.459592037 8.384007213 8.345242821 8.014808696 8.495920249 8.116449173 8.349488012 8.369540147 7.928912124 119465439 nifH Nitrogen Nitrogen fixation Nodularia spumigena CCY9414 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nodularia;species:Nodularia spumigena; 7.363029364 7.434689574 7.281219152 7.188401284 7.639917736 154657 rubisco Carbon cycling Carbon fixation superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 8.103071594 8.480056791 8.405918098 8.071228772 8.638132598 8.066542407 8.410120288 8.279131342 7.933961443 42558790 ZntA Metal Resistance Zinc Arthrobacter aurescens superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.668358683 7.66511797 8.090163134 8.054323179 8.350242671 8.317519167 8.261347286 8.295652365 8.089530953 62120275 alkB Organic Remediation Other Hydrocarbons Rhodococcus sp. SH22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.444273187 8.306404152 8.185585194 8.21990734 8.131674913 8.171588743 8.407157415 8.417039711 8.18571414 8.18697916 226229321 sigma_24 Stress Sigma factors Gemmatimonas aurantiaca T-27 superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 7.601706993 7.169940542 7.879062375 7.205705381 7.652505373 77952963 phn Organic Remediation Herbicides related compound Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 7.473111715 7.433780928 7.146264542 6.885662456 7.68899299 84684963 pstB Stress Phosphate limitation Rhodobacterales bacterium HTCC2654 8.322207182 8.468894684 8.255288814 8.28790275 7.691368597 8.063903602 8.49631576 8.441095423 8.254449158 8.296257604 8.540779812 19171186 atzD Organic Remediation Herbicides related compound Rhodococcus erythropolis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.293164964 8.230979278 7.668475321 7.845673632 7.682601262 7.779423742 8.017410268 8.340983982 7.953634743 8.367113596 36785469 SMR_antibiotics Antibiotic resistance transporter Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 8.228478568 8.535198204 8.051922652 7.907743942 7.795808296 7.384886751 7.995100415 7.537617321 7.534922122 7.78268073 94553902 PobA Organic Remediation Aromatics Aromatic carboxylic acid Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 7.797180613 7.535690648 8.091688321 8.279432709 7.863081664 8.292349694 7.624893156 7.637550693 7.69411609 189336858 nagG Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 7.633945099 7.821837484 7.764248925 7.639865213 8.069832036 7.771793623 7.526859682 7.932024916 7.571953419 46307898 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.166609639 7.160894263 7.55318815 7.45842724 7.400239124 7.721357856 7.771047414 7.579050892 7.496336144 154248657 tftH Organic Remediation Aromatics Chlorinated aromatics Xanthobacter autotrophicus Py2 8.243373292 8.355251416 7.750634287 7.516031818 7.927946143 8.413551341 7.734421771 8.426690561 7.709572527 7.868939775 7.707383507 27349041 CorC Metal Resistance Cobalt Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.114228461 8.21389834 7.411353644 7.982810717 8.16869366 8.112984183 7.811801111 8.012896313 8.201728196 7.988009007 8.044423072 189218174 gyrB other category gyrB Methylokorus infernorum V4 superkingdom:Bacteria;phylum:Verrucomicrobia;order:Methylacidiphilales;family:Methylacidiphilaceae;genus:Methylacidiphilum;species:Methylacidiphilum infernorum; 7.547206216 7.485499939 7.470191749 7.103553094 7.232807513 7.606503639 7.463706284 7.574884962 220709146 ChrA Metal Resistance Chromium Geobacillus sp. Y412MC61 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.029859329 8.202041236 7.392469431 7.841521452 8.322853504 8.096726564 8.251438689 7.845358099 8.115352827 156235001 BchY other category chlorophyllide reductase Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 8.394246952 8.236990865 8.05200345 7.960181796 8.096992678 7.733205084 8.177216528 8.037907827 8.358853222 8.159294932 8.321345259 50839653 hly virulence hemolysin Propionibacterium acnes KPA171202 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 7.94492308 8.354970081 7.872961082 7.818050933 7.64449835 7.425367867 7.849639688 7.906310608 8.008624143 7.895199788 7.92645378 158141583 nrfA Nitrogen Dissimilatory N reduction Alkaliphilus oremlandii OhILAs superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus oremlandii; 8.467682529 8.678072998 7.702165732 7.819142669 8.780455493 8.345776515 8.250371967 8.046654485 8.096739711 145048130 phtA Organic Remediation Aromatics Aromatic carboxylic acid Polynucleobacter sp. QLW-P1DMWA-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 7.393814754 7.336074974 7.254707714 7.014227047 7.089173358 7.708224133 6.97068886 7.36120952 34500145 gyrB other category gyrB Escherichia hermannii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 7.562490861 7.681409563 8.325084992 8.507903676 7.738848965 8.732428369 7.802020251 8.22280846 8.149123722 214031090 HBH Organic Remediation Aromatics BTEX and related aromatics Ruegeria sp. R11 7.627399744 7.485484283 7.456642469 7.142157429 7.377080916 7.684621944 7.296362277 7.235078715 7.612347333 86137334 sox Sulphur Sulphur oxidation Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.374929619 8.502537265 8.410581746 8.53466988 8.137475919 8.749610385 8.478724766 8.277482083 8.120406288 7.987321257 7.846863357 260456673 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 8.289578666 8.390792847 8.042279627 8.029075914 8.555628185 8.166251241 8.467267946 8.420395127 8.228625739 163764771 clpC Stress Protein stress Bacillus selenitireducens MLS10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus selenitireducens; 7.809675451 8.305374896 7.414682182 7.474283424 7.486104871 6.89181148 6.81694753 7.307676139 6.835596307 7.167313879 7.097025278 21224748 BADH Organic Remediation Aromatics Other aromatics Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.127604599 8.381811878 8.451988029 8.206983575 7.853700123 8.320648884 8.148822097 8.336827818 8.095612742 7.875754628 7.914476046 150027123 katE Stress Oxygen stress Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 7.453008253 7.458971984 7.333970624 7.232941426 7.412996308 7.963033176 7.436022249 7.468607884 7.534303545 151421640 arsB Metal Resistance Arsenic Nitratiruptor sp. SB155-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;genus:Nitratiruptor; 8.238346793 8.108926377 7.977548171 8.173668854 8.108470221 7.966682789 7.908246129 7.690062301 8.010211025 23493645 sigma_38 Stress Sigma factors Corynebacterium efficiens YS-314 8.575151686 8.331238816 8.260035201 8.362342063 8.656250394 8.20558297 8.665013504 8.678591959 8.551846842 228696102 sigma_24 Stress Sigma factors Bacillus cereus Rock3-44 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 7.799769922 8.087281324 7.256573905 7.143300395 7.533872997 7.654236024 7.820648075 7.721550979 8.117158788 8.093265682 8.314837423 188993872 clpC Stress Protein stress Porphyromonas gingivalis ATCC 33277 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas;species:Porphyromonas gingivalis; 7.437248452 7.127102698 91068415 sigma_70 Stress Sigma factors Rickettsia bellii RML369-C superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales;family:Rickettsiaceae;genus:Rickettsia;species:Rickettsia bellii; 7.154923085 7.240478441 7.091121492 21309659 B_lactamase_C Antibiotic resistance Beta-lactamases Shewanella algae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 7.161438748 6.809918887 7.014778543 6.98240073 7.169445261 116696222 PobA Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 7.53223816 7.905234618 8.029674563 8.319377976 7.22413061 7.438373238 7.478061007 13560125 dsrA Sulphur sulfite reductase Thermodesulforhabdus norvegica 7.953662242 8.009342669 7.564833377 7.245763359 7.496637758 7.365869822 7.372397384 7.483785585 7.722293216 268549350 amoA Nitrogen Nitrification superkingdom:Archaea; 8.002665709 8.056624286 7.121633914 6.79792317 116671878 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.457619512 7.371669001 7.793231346 7.957014781 7.438777681 7.303834694 7.528794297 7.571448629 125717962 MATE_antibiotic Antibiotic resistance transporter Streptococcus sanguinis SK36 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus sanguinis; 7.895638033 7.987109445 7.397677307 7.327526664 7.435249482 78093552 narG Nitrogen Denitrification uncultured bacterium 8.004571165 8.147723261 8.150588446 7.936202146 8.100160077 8.169603133 8.142536387 7.985156671 8.205730408 255334013 fnr Stress Oxygen stress Hyphomicrobium denitrificans ATCC 51888 8.566572491 8.400878562 8.138141516 7.782358168 8.539709182 8.934568353 8.433965776 8.496777531 8.042965184 8.394103665 8.162647502 227875565 oxyR Stress Oxygen stress Mobiluncus mulieris ATCC 35243 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus mulieris; 8.289582796 8.304603831 8.502898622 8.681322385 8.870410231 8.244814232 8.616060021 8.937778102 8.72389745 254515451 fnr Stress Oxygen stress gamma proteobacterium NOR5-3 8.972641077 8.692494496 8.55755121 8.592377001 8.567742229 8.505300763 8.347010243 8.749946404 152991570 sox Sulphur Sulphur oxidation Nitratiruptor sp. SB155-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;genus:Nitratiruptor; 7.285235168 7.239373763 7.110729394 7.019016528 7.56965889 7.391420181 7.330704442 118616153 cspB Stress Cold shock Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 6.772264923 7.012890747 7.393915891 6.925872775 7.594035865 7.024313302 6.750362993 56552474 linC Organic Remediation Pesticides related compound Zymomonas mobilis subsp. mobilis ZM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Zymomonas;species:Zymomonas mobilis; 8.855784625 8.819147849 9.080314687 8.734647442 8.463499519 9.139211213 9.196122021 8.671183928 9.036871484 8.392062373 229166640 srt virulence surface protein Bacillus cereus AH621 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 7.404654272 7.762932831 6.84409605 7.255434652 7.223802663 7.584050426 254464129 sox Sulphur Sulphur oxidation Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.710765105 8.073745981 7.979278756 7.531791947 8.330675543 7.849896171 7.73961454 7.784990657 109452479 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.218000395 7.183309115 7.071755374 7.51130606 83747462 pilin virulence pilin Ralstonia solanacearum UW551 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 8.505324113 8.361044651 7.540829693 7.762902615 8.334194722 8.395213593 7.555988124 7.617286048 7.719312689 7.822874324 94415004 TerC Metal Resistance Tellurium Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.076462321 8.470157904 8.523813705 8.194289257 8.190501306 8.673187429 8.40310725 7.973753399 8.046207427 148557165 vanA Carbon cycling Carbon degradation Others Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 7.563679066 8.022807745 8.114125763 7.605215479 7.552141132 8.319154514 7.789316808 8.096141468 7.618892099 ieghzo203 hzo Nitrogen Anammox 7.426800207 7.945533553 7.92630475 7.499364931 7.808023778 7.298158021 7.768783471 7.861992455 85681949 gyrB other category gyrB Oceanimonas denitrificans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Oceanimonas; 7.851176281 8.091583391 8.101124184 7.978818112 8.026562711 8.033272151 8.442008948 8.18569329 8.478585778 8.345019104 8.270694451 146422009 cellobiase Carbon cycling Carbon degradation Cellulose Pichia guilliermondii ATCC 6260 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Meyerozyma;species:Meyerozyma guilliermondii; 7.171149607 7.367353415 7.473995398 6.886264366 7.520455705 6.842605834 7.432487343 146304289 antioxidant Bioleaching Metal Resistance Metallosphaera sedula DSM 5348 8.12508768 8.249316573 7.589043986 7.442117185 7.539990885 6.940041453 6.73347837 7.599422542 7.29712535 7.501211922 7.702984009 171910540 xylA Carbon cycling Carbon degradation Hemicellulose Verrucomicrobium spinosum DSM 4136 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Verrucomicrobium;species:Verrucomicrobium spinosum; 8.011286376 8.152622168 7.447866692 7.730057289 7.818016635 7.577839373 7.276476356 7.91745137 7.552402483 7.59593194 7.767292393 145243592 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.314329415 7.927084592 7.892523337 8.338893175 7.727415296 7.929845646 7.669663698 7.930850558 115370537 ahpC Stress Oxygen stress Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 7.097688338 7.173240946 7.429312821 7.456509307 6.647512346 7.812052461 6.867307757 7.212242112 211958930 mcrA Carbon cycling Methane Methane production Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 7.503823655 7.761421419 8.189906672 8.383826518 7.857366996 8.572722183 7.855347431 8.015546222 7.95120614 213966067 pcc Carbon cycling Carbon fixation Corynebacterium amycolatum SK46 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium amycolatum; 8.551135077 8.68111656 7.997430537 7.950749951 7.796662787 7.996049647 7.849908593 8.02311176 8.11834366 8.162550498 7.985582692 260647016 sigma_70 Stress Sigma factors Streptomyces scabiei 87.22 7.952048851 7.901554479 7.845915835 7.83164846 8.09955998 8.158860912 8.090317282 8.003318725 7.984177571 227420837 APS_AprB Sulphur adenylylsulfate reductase Desulfohalobium retbaense DSM 5692 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium;species:Desulfohalobium retbaense; 8.440012497 8.910195349 8.472992369 8.474187777 8.734336997 8.898939621 8.704047607 8.980106038 8.513327307 8.241401968 8.627759493 23008517 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 8.456035598 8.487541394 8.200994027 8.471881188 8.228456717 8.139682713 8.598361305 8.369458281 8.197921141 8.109742875 88802493 clpC Stress Protein stress Polaribacter irgensii 23-P superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Polaribacter;species:Polaribacter irgensii; 8.095616358 7.972439382 7.661814122 7.597784517 7.783739395 8.071835144 7.697925464 7.874597893 7.677580745 7.871655166 7.602586306 41408718 narG Nitrogen Denitrification Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 7.226478074 7.686917264 7.312350949 8.065439911 7.573380098 7.512997384 7.488320002 8.002439135 213013462 amyA Carbon cycling Carbon degradation Starch Thermotogales bacterium TBF 19.5.1 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Kosmotoga;species:Kosmotoga olearia; 7.429389695 7.423714347 7.480267726 7.535279231 6.896662657 7.738211101 7.484675916 7.470295596 7.490112386 119956954 ophC Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.636904464 8.852728067 8.433441773 8.435899761 8.327315469 8.205613307 8.734230686 8.504378304 8.252482507 8.294315653 8.346660627 88175199 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.094018641 8.005730897 7.607741639 7.799649514 7.548632316 7.276629816 7.891082977 7.942197919 7.647497791 8.125039941 256740866 pilin virulence pilin Thiomonas intermedia K12 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas;species:Thiomonas intermedia; 7.380390958 7.051600428 7.068341961 260611939 MATE_antibiotic Antibiotic resistance transporter Vibrio metschnikovii CIP 69.14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio metschnikovii; 7.11250898 7.508853832 7.827299838 8.372080685 7.72546189 8.362707811 217503544 ureC Nitrogen Ammonification Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 7.948889033 7.85025563 7.615747543 7.929875852 7.880901568 8.02791842 7.563954006 7.70495739 7.67750981 240103284 ABC_antibiotic_transporter Antibiotic resistance transporter Thermococcus gammatolerans EJ3 8.150737068 8.403784148 7.277291389 7.554455931 7.933285629 8.047179035 7.673469694 7.985380326 7.527488123 7.686595985 7.518291535 227514580 sigma_70 Stress Sigma factors Lactobacillus fermentum ATCC 14931 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus fermentum; 7.474437556 7.094229758 7.584068296 7.418360524 7.062964727 7.761056517 7.06949782 7.192728267 7.149022765 189196280 hdnO Organic Remediation Aromatics Heterocyclic aromatics Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7.969629987 7.135482679 7.748352124 8.184612158 7.672598926 7.966115522 7.854044059 7.76451302 7.845436473 190150058 phoA Stress Phosphate limitation Actinobacillus pleuropneumoniae serovar 7 str. AP76 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus pleuropneumoniae; 7.066798056 7.25203055 206687122 nirK Nitrogen Denitrification Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.933660053 7.846550838 7.995533923 8.349188672 7.989028461 8.373518342 8.170711891 8.450321497 8.049900408 229478183 sigma_70 Stress Sigma factors Planctomyces limnophilus DSM 3776 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces limnophilus; 7.934686422 8.011191539 7.217347999 7.610414819 7.684221957 7.565846333 7.254870291 7.80452186 7.218907145 7.082427921 7.321178949 157414409 obgE Stress Radiation stress Campylobacter jejuni subsp. jejuni 81116 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter jejuni; 7.312234955 7.208567423 7.024420564 7.203150769 7.187475761 7.468931689 7.560471491 117995501 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 6.51406609 7.381104955 258405403 fnr Stress Oxygen stress Desulfohalobium retbaense DSM 5692 7.265294501 7.406341849 7.437039845 7.170902203 7.351741007 7.230595893 7.112586452 7.375263875 256722913 endochitinase Carbon cycling Carbon degradation Chitin Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 8.190601733 8.239453074 8.094440461 7.631202977 7.97515214 8.185019602 8.057096336 7.830182241 8.28315777 110823847 bphF1 Organic Remediation Aromatics Polycyclic aromatics Rhodococcus sp. RHA1 8.680059918 8.674033354 8.239585845 8.188218392 8.178011237 8.63384897 7.967240977 8.443355612 7.964919403 7.79693359 7.984865381 78224357 cytochrome Energy process Energy process Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 7.275301945 7.316176101 7.536292802 7.64127128 7.152552487 7.856845208 7.382755536 6.950620711 7.361651647 260063041 pcc Carbon cycling Carbon fixation Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 7.024714471 7.140237684 7.231473992 7.188911367 7.280274888 7.685833652 114563752 cytochrome Energy process Energy process Shewanella frigidimarina NCIMB 400 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella frigidimarina; 8.124517485 8.608439882 7.175953854 7.137388513 7.550045505 7.471684116 7.007695103 7.49763235 126719177 CopA Metal Resistance Copper Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.599062576 8.378396266 8.230503146 7.839672927 8.057195356 7.846486981 7.629100454 7.990669037 7.858474144 7.852117332 39648165 alkK Organic Remediation Others Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.379423548 7.520812921 227980740 glnA Stress Nitrogen limitation Tsukamurella paurometabola DSM 20162 8.414793801 8.416071577 7.651319092 7.919269848 8.027199865 8.152171098 7.269575226 8.268603267 7.745064382 7.787334849 7.70395366 114319987 ArsC Metal Resistance Arsenic Alkalilimnicola ehrlichei MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 7.679069379 7.091468592 226721789 pstC Stress Phosphate limitation Azotobacter vinelandii DJ superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 8.691760533 8.337183747 8.700614717 8.523363199 8.201008631 8.59690687 8.425457756 8.431806952 8.41392686 8.493696261 8.445565892 229499276 narI Stress Oxygen limitation Geobacillus sp. Y412MC52 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.023172022 8.499846507 8.187949811 8.407183104 8.086263698 7.671879227 8.251668046 7.835621943 8.092677124 8.062828019 8.396896253 95110682 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas 8.214840736 8.211101348 7.667839694 7.60600086 7.767158566 7.764234473 7.569532956 7.997008592 7.477631885 7.404355872 7.573493876 221133393 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Glaciecola sp. HTCC2999 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola; 7.49008487 7.487958233 7.595395958 71905645 gyrB other category gyrB Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 7.50851835 7.371565744 7.810075189 7.467430107 7.573495465 7.406963014 7.636004939 94471309 narG Nitrogen Denitrification uncultured bacterium 8.170717679 8.222275848 7.477045096 7.437572028 8.009784231 7.934092971 7.734125232 7.958247835 7.505744525 7.519540624 7.567160413 27380715 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.167276955 8.345220389 8.257966936 8.366205906 8.079812452 7.511651214 8.152616505 8.057911965 7.908565893 7.793933836 8.186126295 118666005 ChrA Metal Resistance Chromium Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.955700259 7.881517557 8.014829032 8.443429661 8.332979049 8.203361607 8.438361298 8.322610281 8.075304578 268610156 xylA Carbon cycling Carbon degradation Hemicellulose Ruminococcus flavefaciens FD-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus flavefaciens; 8.168445921 8.177399579 7.414009743 7.451419456 7.572726089 7.151040333 6.712446601 7.817010345 7.621689254 7.263340961 7.456257547 73762768 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.180420691 8.305160763 8.054120306 7.926282764 7.954106055 7.511587047 7.685763089 8.157266968 7.764356689 7.817387971 7.75520953 33568374 alkK Organic Remediation Others Bordetella bronchiseptica RB50 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella bronchiseptica; 8.06830309 8.289714803 7.931056552 7.526513542 7.51483266 7.626460716 7.699626406 8.060845051 7.72628108 7.981779352 7.492713516 56313029 bclA Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 8.518737397 8.138482558 7.980271799 8.097217009 8.133247806 8.364730409 7.917972159 8.471324129 8.146762743 8.115199138 7.91108033 224223697 rubisco Carbon cycling Carbon fixation Magnetospirillum sp. J10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum; 8.492116498 8.649533449 8.180422096 8.435746836 8.543429171 8.253298403 8.382236368 8.381954384 8.178214708 8.589316668 8.293095259 153003832 cytochrome Energy process Energy process Anaeromyxobacter sp. Fw109-5 8.309758777 8.062051367 7.705278508 8.371237732 8.143125425 7.910019453 8.14020521 119193875 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Coccidioides immitis RS superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides immitis; 7.303436647 7.214278772 7.520886977 7.70707485 7.266079916 7.903376388 7.045589359 7.265342794 7.49644563 52348090 aclB Carbon cycling Carbon fixation Bacillus licheniformis DSM 13 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 7.753410417 7.559292487 7.604251802 7.522834696 7.315176909 7.664896188 7.400578322 7.486949301 7.272390008 3676528 Host_recognition_T2_type Bacteria phage HOST RECOGNITION/STRUCTURAL Enterobacteria phage Ac3 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.97839594 7.651984274 7.652770904 7.787211134 8.322818418 7.224156648 7.721366454 182438939 dehH Organic Remediation Chlorinated solvents Streptomyces griseus subsp. griseus NBRC 13350 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 7.880033072 7.367483715 28971823 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas sp. P2 8.2880313 8.097221345 8.0269163 8.348280931 8.122107756 8.148577155 8.207985507 8.248493446 8.230499808 222085559 pstC Stress Phosphate limitation Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.387723589 8.418642148 8.042926735 8.112333598 7.814942153 8.123125384 8.855199941 8.652939069 8.452048375 7.905717981 77996583 cydA Stress Oxygen limitation Carboxydothermus hydrogenoformans Z-2901 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Carboxydothermus;species:Carboxydothermus hydrogenoformans; 7.547666875 7.702793596 7.272100532 7.027277445 7.142950099 7.707203595 222085726 CadA Metal Resistance Cadmium Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.275434391 8.602352214 7.930355967 7.958111403 8.373275072 8.566681856 8.246270605 8.565418434 8.104065827 8.514269524 8.564234815 58001040 obgE Stress Radiation stress Gluconobacter oxydans 621H superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter oxydans; 7.813465813 7.581796367 7.435911386 7.317700845 7.327938582 7.717575195 7.540165334 7.443826743 7.65280607 77964757 sigma_70 Stress Sigma factors Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.225588571 8.333017099 7.56681083 7.733556073 8.327964029 8.822704724 8.124042583 8.661660401 8.021064041 8.225222044 8.425539919 109455806 narI Stress Oxygen limitation Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 8.201325111 8.207778417 8.551616817 8.803925402 8.622867897 8.614549498 8.674998138 8.793078897 8.85958838 15614574 BADH Organic Remediation Aromatics Other aromatics Bacillus halodurans C-125 7.338983098 7.042532408 7.076275509 6.974507783 6.914102873 254480218 B_lactamase_C Antibiotic resistance Beta-lactamases marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.246292123 8.581940199 8.059745953 7.768428277 7.831691552 7.314296709 7.285732497 7.864147524 7.646027438 7.805947218 7.972008563 84685608 nagI Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.183226963 8.178059866 8.012679084 8.140477694 8.32357725 7.963923127 8.262594904 8.084104285 8.111722694 8.227237349 7.832381181 42737145 akbF Organic Remediation Aromatics BTEX and related aromatics Bacillus cereus ATCC 10987 7.900848409 7.878575899 8.294515303 7.577846305 8.170841865 8.016909098 8.128041519 8.20506439 7.912245979 146272715 clpC Stress Protein stress Pelotomaculum thermopropionicum SI superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Pelotomaculum;species:Pelotomaculum thermopropionicum; 7.45316097 7.548076349 7.798544549 8.234054859 7.957717841 8.070684345 7.887100908 7.747722144 8.123872599 119358457 phoA Stress Phosphate limitation Chlorobium phaeobacteroides DSM 266 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 7.438422773 7.02678273 6.799074545 7.437650053 83311906 sigma_32 Stress Sigma factors Magnetospirillum magneticum AMB-1 8.78765404 8.694138995 8.398359305 8.73596497 8.500035835 8.728384358 8.316329161 8.475490423 8.296111164 227273366 cellobiase Carbon cycling Carbon degradation Cellulose Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 8.126959293 8.243606626 7.656427509 7.717885798 8.227009751 8.247470701 7.511304655 8.425436264 7.959090512 8.075855857 7.924739179 119898739 xlnD Organic Remediation Aromatics Other aromatics Azoarcus sp. BH72 8.402536861 8.493311661 8.103719885 8.034993435 8.035181062 8.245725932 8.164991011 8.258656647 8.083810762 8.046706895 224604734 pstB Stress Phosphate limitation Natrialba magadii ATCC 43099 7.330902254 7.603368474 7.21515646 7.056308993 7.143581218 7.812608446 7.165948268 7.245256128 212530218 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.296144508 7.140979965 7.138356239 7.09151202 6.962639073 7.606049699 7.011109896 6.987897485 7.385500951 83363685 CODH Carbon cycling Carbon fixation Rhodobacter sphaeroides ATCC 17029 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 7.889108202 7.793933277 7.780454549 7.428948391 7.643831798 7.79219274 7.677442784 7.920290752 7.520494945 198263115 grpE Stress Heat shock gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.549555858 7.526851154 7.557745442 7.859370055 7.553466008 8.193962016 7.216118895 7.339060853 7.635596676 254361556 SMR_antibiotics Antibiotic resistance transporter Mannheimia haemolytica PHL213 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Mannheimia;species:Mannheimia haemolytica; 7.991853014 7.883353308 8.015492302 8.019989046 7.676937713 8.235553309 8.179147362 8.277268967 7.516692926 111018346 pcaG Organic Remediation Aromatics Other aromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.498545939 8.664659859 8.529533314 8.486158483 7.964947631 8.255471255 8.554251482 8.450195141 8.444705124 8.357252484 197316492 pimF Organic Remediation Aromatics Aromatic carboxylic acid Vibrio fischeri MJ11 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Vibrio fischeri; 8.104563734 7.573751419 7.845657241 7.364426606 7.369142432 7.569176632 7.807640109 227883396 B_lactamase_C Antibiotic resistance Beta-lactamases Halogeometricum borinquense DSM 11551 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halogeometricum;species:Halogeometricum borinquense; 7.974534693 7.585777678 7.846714973 25029416 nagI Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 8.170043836 8.197406856 8.1690305 8.292509026 8.065915989 7.880546897 8.16705198 8.0868695 8.257867612 8.227287903 8.128882648 225155485 sigma_24 Stress Sigma factors Opitutaceae bacterium TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 7.990052366 8.211138074 7.980199072 8.34020048 8.190883354 8.438545405 7.956927208 8.107032879 8.208906202 54018042 NiR Nitrogen Assimilatory N reduction Nocardia farcinica IFM 10152 7.711353388 7.927869153 7.724123252 7.624844083 7.879536274 7.910182954 7.967728262 7.805838447 7.687032183 91204897 TerC Metal Resistance Tellurium Rickettsia bellii RML369-C superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales;family:Rickettsiaceae;genus:Rickettsia;species:Rickettsia bellii; 7.150196323 6.803236972 81251645 nirS Nitrogen Denitrification uncultured organism 7.489320171 7.475871973 7.780053544 7.644643895 7.212135116 71383772 nasA Nitrogen Assimilatory N reduction Synechococcus sp. UW179 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.274668312 8.168729386 7.843462778 8.010384649 8.323750708 8.38132823 8.306473745 8.594586505 8.538485945 8.782738094 51892717 pcc Carbon cycling Carbon fixation Symbiobacterium thermophilum IAM 14863 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVIII. Incertae Sedis;genus:Symbiobacterium;species:Symbiobacterium thermophilum; 7.663124813 7.721409542 7.300599402 7.52765135 7.909389062 8.229755838 7.870611264 7.790055188 7.76395448 60100871 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.229945648 7.316138138 7.008764313 7.325080825 77639209 dmsA Organic Remediation Others Alkaliphilus metalliredigenes QYMF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus metalliredigens; 7.398364276 7.20233323 7.175602937 6.996303589 6.838064804 7.206448471 7.303622364 77973953 ZitB Metal Resistance Zinc Yersinia frederiksenii ATCC 33641 7.720808875 7.710166491 7.159971342 7.301249187 7.667443216 7.086799926 7.478603679 73541378 catB Organic Remediation Aromatics BTEX and related aromatics Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.602530391 8.524584938 8.326965813 8.315490542 7.967990348 7.936151282 8.488319081 161391967 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 8.39706914 8.247695848 7.984050866 8.352856825 8.388750804 8.607442703 8.353214331 8.214983609 254819723 hly virulence hemolysin Mycobacterium intracellulare ATCC 13950 7.919798578 8.081813886 7.491061223 6.767181063 28854152 MFS_antibiotic Antibiotic resistance transporter Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 7.833817143 7.885599997 7.797550817 7.791706731 7.942603309 8.036306045 8.086746867 8.022124738 7.975984802 21623660 nirK Nitrogen Denitrification Hyphomicrobium denitrificans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 7.805887644 7.627670519 7.579151468 7.66311352 7.800954884 7.927619525 7.670398858 7.662847333 7.751651704 21388681 bphA Organic Remediation Aromatics Polycyclic aromatics Rhodococcus sp. YK2 8.261667572 8.234728436 7.455894124 7.627004781 8.091145301 8.195875424 7.824797321 8.283708248 7.913916442 7.815208157 8.058746601 160888177 ChrA Metal Resistance Chromium Bacteroides uniformis ATCC 8492 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides uniformis; 7.887554492 8.275403689 7.433820848 7.550231093 7.81201521 7.852333185 7.626359229 8.052719118 7.579587657 7.480236959 7.607682026 154000011 pstB Stress Phosphate limitation Candidatus Methanoregula boonei 6A8 7.15350993 7.305256094 7.405169103 7.043854338 7.1951686 118424499 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.561225969 7.452903616 7.433002778 7.250331664 7.606853094 7.971616789 7.738778398 7.188762582 7.332284829 120595693 pchCF Organic Remediation Aromatics BTEX and related aromatics Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8.190363096 8.339551277 7.766313977 7.58643422 7.72610327 7.645924574 7.289132354 7.956463574 7.555053454 7.487363825 7.425524732 227541860 pcc Carbon cycling Carbon fixation Corynebacterium glucuronolyticum ATCC 51866 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glucuronolyticum; 8.168886344 8.325720924 7.912204683 7.778181059 7.591278272 7.807953196 7.743560971 7.937427792 7.577687158 7.744219005 7.851263911 5360513 sigma_24 Stress Sigma factors Pseudomonas syringae pv. tomato superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 8.07575114 8.040749538 7.720183658 7.432444011 8.040158251 8.003094929 7.739971364 7.493585922 7.700101647 212538573 BpH Organic Remediation Aromatics Aromatic carboxylic acid Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.747854532 7.845991041 152985953 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.774016581 8.917380752 8.557838396 8.3882643 8.139369822 8.136878284 8.584310317 8.440599369 8.482896411 8.512123279 37591408 rd Organic Remediation Chlorinated solvents bacterium VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.52297342 7.667213445 7.735251522 7.764962823 7.653148139 7.862147086 7.693519934 7.846337888 7.787610484 68135575 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.009726458 7.019815759 6.654697713 7.27428325 218564158 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 8.154630198 8.129876693 7.719361797 8.197749071 8.216574154 7.880323694 8.210870052 7.88497034 50875682 sigma_32 Stress Sigma factors Desulfotalea psychrophila LSv54 8.457253007 8.400739156 8.541252719 7.667389808 8.318095675 7.640378048 8.541956177 8.818956088 7.728615201 126348169 TerC Metal Resistance Tellurium Streptomyces ambofaciens ATCC 23877 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ambofaciens; 7.977267278 7.886461944 7.445591994 7.537408089 7.987349648 7.953246898 7.896187564 7.368382624 8.013802583 21226763 arsM Metal Resistance Arsenic Methanosarcina mazei Go1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina mazei; 7.239270519 7.422436433 70725497 CopA Metal Resistance Copper Staphylococcus haemolyticus JCSC1435 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus haemolyticus; 7.546311255 7.369777202 7.702231215 8.037407074 7.458571957 8.078089966 7.692368084 7.80009761 7.549185196 56967343 mcrA Carbon cycling Methane Methane production uncultured archaeon superkingdom:Archaea; 8.906095576 9.039966982 8.391319864 8.143687831 8.479399202 8.215809187 8.038117777 8.37157814 8.188889744 8.369460184 8.446793063 89512924 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.27444395 7.390472715 7.40281074 7.167194331 7.273675288 7.861854092 7.193180514 7.149581254 7.398345999 21221249 cellobiase Carbon cycling Carbon degradation Cellulose Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.347836554 8.311777008 8.434785184 8.414506506 8.533813059 8.454015579 8.539971334 8.658008054 8.597895014 210631658 ppk Phosphorus Phosphorus utilization Collinsella stercoris DSM 13279 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella stercoris; 7.676830414 8.001788603 7.598407994 8.100164962 7.972100471 8.147023106 8.292810557 114190362 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.472633986 7.514860108 7.484472987 7.566894535 7.707700478 7.232452553 7.355224698 206740053 endoglucanase Carbon cycling Carbon degradation Cellulose Dictyoglomus thermophilum H-6-12 superkingdom:Bacteria;phylum:Dictyoglomi;class:Dictyoglomia;order:Dictyoglomales;family:Dictyoglomaceae;genus:Dictyoglomus;species:Dictyoglomus thermophilum; 6.93148598 7.19042111 157285616 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 8.010053007 8.233272081 7.244679743 7.158413689 7.269870504 6.979970893 6.762909749 7.512775596 7.227260272 7.005396897 7.050749131 77176916 endoglucanase Carbon cycling Carbon degradation Cellulose Hypocrea jecorina superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 8.427297836 8.12593506 8.510675153 8.455248636 8.471231283 7.901157495 8.530006496 8.234401706 8.234555833 8.478837306 8.067423391 195541880 fnr Stress Oxygen stress uncultured bacterium 1042 7.324740901 7.589701684 7.825418016 8.144953647 7.71280615 8.085063327 7.804813605 8.078138242 225571296 proV Stress Osmotic stress Clostridium hylemonae DSM 15053 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 7.6782045 7.736164543 7.891768031 7.608846085 7.907823254 8.082033656 8.120094398 7.64148479 7.871975603 99083201 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.968642746 8.09575386 7.776080324 7.830058618 7.949173914 7.70948317 7.860850449 7.89997197 7.967665506 8.044111274 7.879044277 150030891 PobA Organic Remediation Aromatics Aromatic carboxylic acid Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 8.314077914 8.668460927 8.152520802 8.033700196 8.39158111 8.100084165 8.489887334 8.062453825 8.31780037 8.070049293 27352383 ppx Phosphorus Phosphorus utilization Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.906236727 7.631435964 7.829573078 8.004276301 7.665310382 8.01005755 8.053177266 7.738281368 254547569 RNA_dependent__RNA_polymerase Bacteria phage REPLICATION Enterobacteria phage BZ13 family:Leviviridae;genus:Levivirus; 7.79839319 7.74746402 7.697747484 7.473929347 7.855970732 7.880694583 7.63111142 7.48867172 7.624159858 121528422 PobA Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 7.395634456 8.615384646 8.316469944 8.489663307 8.144376211 8.623785794 7.740572484 7.801591671 7.807585474 227858304 pstB Stress Phosphate limitation Finegoldia magna ATCC 53516 7.400294352 7.174644411 224464470 pstB Stress Phosphate limitation Methylophaga thiooxidans DMS010 8.093832952 8.294034486 7.836055397 7.915258112 7.446210679 7.581559067 7.959091923 8.221472212 7.984318307 7.634206606 7.959441878 260579373 AceA Carbon cycling Carbon degradation others Corynebacterium jeikeium ATCC 43734 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 7.798889699 7.54302996 7.68315889 7.761839832 7.921865216 7.945138251 7.681340422 227832587 cspB Stress Cold shock Corynebacterium aurimucosum ATCC 700975 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium aurimucosum; 8.003534896 7.970140817 8.08712243 7.696174053 8.24959524 7.913884321 8.058556181 8.033180236 8.080245752 86285628 xylanase Carbon cycling Carbon degradation Hemicellulose Sorangium cellulosum superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium; 7.634779903 7.858165768 8.123074474 8.251286549 7.836781182 115421410 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 7.281382402 7.590627283 7.657485619 7.616188047 6.839391012 8.113180829 7.306381069 7.292137814 7.451494892 53728257 ZntA Metal Resistance Zinc Haemophilus somnus 2336 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Histophilus;species:Histophilus somni; 8.49749905 8.560312977 149195679 pstB Stress Phosphate limitation Lentisphaera araneosa HTCC2155 7.80299063 8.251137307 7.277090209 7.177388509 7.212440244 6.593099036 7.228508985 7.181694381 7.311197319 7.362202922 39575889 CopA Metal Resistance Copper Bdellovibrio bacteriovorus HD100 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 8.185253584 8.431037215 7.647145057 7.612084314 7.439654574 7.495335712 7.595208379 7.576106822 7.668060295 99030613 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 7.113994255 7.05434969 56565277 nifH Nitrogen Nitrogen fixation Herbaspirillum sp. B501 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum; 7.664842208 7.549686501 6.953594023 7.738951057 7.159610049 7.239552177 198267838 CopA Metal Resistance Copper Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 7.594145595 7.50311589 7.436930068 7.629225378 7.598068568 7.732984834 7.707119397 7.642867411 7.756469168 19070155 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.236538182 8.011309028 7.793436178 7.686007785 7.77064444 8.243651144 7.621753387 7.615185199 7.827212073 196248380 AceB Carbon cycling Carbon degradation others Geobacillus sp. G11MC16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.578081533 7.585598892 7.648919852 7.709864126 56697858 pimF Organic Remediation Aromatics Aromatic carboxylic acid Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 7.280597188 7.242266539 7.36980697 7.406261499 6.542320328 7.750657835 7.184074216 7.331482098 7.318275222 163841972 obgE Stress Radiation stress Renibacterium salmoninarum ATCC 33209 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Renibacterium;species:Renibacterium salmoninarum; 7.960274115 7.277391345 7.678686524 7.54295434 78195632 ahpC Stress Oxygen stress Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 7.123563526 7.720986808 7.772923439 7.652187683 6.596265812 7.423676824 7.752782324 134100915 Catechol Organic Remediation Aromatics Other aromatics Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 8.343476546 8.213384253 8.517545469 7.916820263 7.604320495 8.181531976 8.03897715 8.087018039 8.097368034 7.820179652 224282785 glnA Stress Nitrogen limitation Bifidobacterium bifidum NCIMB 41171 8.156481103 8.458652399 7.427592774 7.479622075 7.604438595 7.996900893 7.652956688 8.029077363 7.67258043 7.513484498 7.487648262 188572637 mcrA Carbon cycling Methane Methane production uncultured archaeon superkingdom:Archaea; 8.372496318 8.191803045 8.38193664 8.420546937 8.583998924 7.963872859 8.703394159 8.079183643 8.470553948 8.55659999 8.646836751 167541398 mcrA Carbon cycling Methane Methane production uncultured bacterium superkingdom:Bacteria; 6.922087632 7.579068882 88781819 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Polaribacter irgensii 23-P superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Polaribacter;species:Polaribacter irgensii; 6.896136495 7.105672617 154353690 narI Stress Oxygen limitation Bacillus amyloliquefaciens FZB42 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 8.008388348 8.219869681 8.21134898 7.728836251 8.565987243 7.94725505 8.134658706 8.121658028 8.140478102 169848168 glx Carbon cycling Carbon degradation Lignin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 9.345054401 9.007995995 9.187163048 9.01491581 8.847706299 9.167943304 8.984539062 9.094849948 8.890840073 8.985545604 8.896399043 223478637 atzA Organic Remediation Herbicides related compound Thermococcus sp. AM4 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus; 8.131904688 8.355319312 7.131870514 7.346750823 7.445491692 7.831530159 7.22645113 7.479476565 7.485270751 7.763291422 12666724 glucoamylase Carbon cycling Carbon degradation Starch Talaromyces emersonii superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces; 7.941213205 8.079458123 8.072495207 8.215152229 8.141713725 8.172025253 8.22975198 7.994128761 7.84155764 209485959 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.936949843 8.226184685 8.275143771 8.060145208 8.003160148 7.759666256 8.159046636 7.688105625 170721316 cytochrome Energy process Energy process Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.589536846 7.477361728 7.798143401 7.989277761 7.70383519 8.260875064 7.800196472 7.475284939 7.362321013 154155441 alkH Organic Remediation Other Hydrocarbons Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 8.140081056 7.917455449 7.700715783 7.80574823 7.539987586 8.219876077 7.697021761 7.607411151 7.690594298 90577214 endochitinase Carbon cycling Carbon degradation Chitin Vibrio angustum S14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium angustum; 8.029761113 8.180592653 8.30438106 8.390372136 8.33612295 7.657168398 8.253062263 7.983580421 8.21121524 8.348483878 8.084098011 220905090 fnr Stress Oxygen stress Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7.880652056 7.821821918 7.890007248 7.817474046 8.280658238 7.891034267 8.010678565 8.412618309 8.05940618 51855508 ArsA Metal Resistance Arsenic Symbiobacterium thermophilum IAM 14863 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVIII. Incertae Sedis;genus:Symbiobacterium;species:Symbiobacterium thermophilum; 8.256182733 8.164594801 8.37133875 8.286034805 7.928302418 7.956546609 8.145139627 8.296427734 8.095906941 8.21769057 7.688764313 258404442 grpE Stress Heat shock Desulfohalobium retbaense DSM 5692 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium;species:Desulfohalobium retbaense; 8.290611251 8.028569031 7.766397177 8.199055803 8.022947175 8.093379991 8.078564716 7.692652335 171741894 ara Carbon cycling Carbon degradation Hemicellulose Bifidobacterium dentium ATCC 27678 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium dentium; 8.048732155 8.154283762 7.866016584 8.181231607 7.727853411 7.95953528 8.231405556 7.980908463 8.101581091 7.950784454 8.156131515 223479433 CopA Metal Resistance Copper Alcanivorax sp. DG881 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 7.92370802 8.14949328 7.971880004 7.839699311 7.71192393 7.983054587 7.810019008 8.021965932 7.759229052 7.839200519 7.684099272 218551400 dmsA Organic Remediation Others Escherichia fergusonii ATCC 35469 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia fergusonii; 6.921464732 7.01630266 260606838 nplT Carbon cycling Carbon degradation Starch Vibrio coralliilyticus ATCC BAA-450 7.946060023 8.148515735 7.241763328 7.259188961 7.499632236 7.252944007 6.725019876 7.359256041 7.085982788 7.123325827 134098251 amyA Carbon cycling Carbon degradation Starch Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 8.655463417 8.783787952 8.506655486 8.634000363 8.966301743 7.60569751 9.010187377 8.203461308 8.367172065 8.92896805 53805117 NiR Nitrogen Assimilatory N reduction Methylococcus capsulatus str. Bath 8.102245361 7.761704834 8.030097026 7.325173774 7.918892775 7.748835048 7.828432102 7.745471535 7.808072378 46915039 ppx Phosphorus Phosphorus utilization Photobacterium profundum SS9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 7.564423456 7.881552129 7.91516331 8.079007481 7.713141524 8.18211704 7.390894895 7.494390751 7.90701889 121589332 CDD Organic Remediation Aromatics Other aromatics Halorhodospira halophila SL1 8.11531971 8.138325934 8.218352072 7.81480647 7.710427386 8.424133107 8.182250161 8.317595511 8.369782579 8.072993873 126105519 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.979222275 8.382954097 7.276920107 7.582407938 7.067153858 7.125977092 7.383017146 118074267 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 6.708538331 7.301320585 6.926649377 6.987743429 88863383 nahA Organic Remediation Aromatics Polycyclic aromatics Jannaschia sp. CCS1 7.817858085 8.057945579 8.209613868 8.1991849 8.326775105 8.320576984 8.395630379 8.485091009 8.275840907 121710016 pcpE Organic Remediation Herbicides related compound Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7.855349759 8.044350224 7.936253565 7.877311402 7.642576959 7.702830737 7.931193114 8.342775127 7.941753201 7.714219355 7.918413565 258533633 pstC Stress Phosphate limitation Pantoea sp. At-9b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 7.899519988 8.063142078 8.286366142 7.618300333 8.306520874 7.828424987 7.367251834 7.735956333 69936175 ZntA Metal Resistance Zinc Paracoccus denitrificans PD1222 7.617628566 7.821039548 7.778024287 7.603618134 7.779645517 7.650204328 7.97731263 7.736165448 7.681223078 124389559 rubisco Carbon cycling Carbon fixation Halorhodospira halochloris superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira; 8.051071695 8.289725165 7.615990837 7.521840262 7.612533169 7.183660496 7.185907961 7.541898225 7.379993813 220913771 CopA Metal Resistance Copper Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 7.690106411 8.22903302 8.53088683 8.668908536 8.164382681 8.20965905 7.936554152 8.265174164 7.921801413 88811285 oxyR Stress Oxygen stress Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 8.401373037 8.544584974 8.113737004 8.124437896 8.420944689 7.971609603 8.830310472 7.993687396 8.571050953 8.659498624 149926944 gyrB other category gyrB Limnobacter sp. MED105 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 7.604569958 8.02898482 8.388014773 8.416629801 8.24819408 8.277918735 8.580514439 8.64900234 8.73422875 114338062 obgE Stress Radiation stress Syntrophomonas wolfei subsp. wolfei str. Goettingen superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Syntrophomonadaceae;genus:Syntrophomonas;species:Syntrophomonas wolfei; 8.094668359 8.65466577 7.486017805 7.507537673 7.463116117 6.94773533 7.629603553 7.528237927 7.256840542 7.61850601 257479579 ara Carbon cycling Carbon degradation Hemicellulose Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 8.555536283 8.513520115 8.285902556 8.581622405 8.521283127 8.612909896 8.468149275 8.617790253 8.039966684 262081101 pstB Stress Phosphate limitation Haliangium ochraceum DSM 14365 8.615394945 8.416929192 8.084929301 8.065644092 8.16923523 8.502016329 8.097534185 8.072206278 8.061340695 8.658789455 210609736 grpE Stress Heat shock Clostridium nexile DSM 1787 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium nexile; 8.174888969 8.49526985 8.169895904 8.036210183 7.833174166 7.892411051 7.979636963 8.021663583 7.902979565 7.924103372 8.138440817 46121181 nagG Organic Remediation Aromatics Aromatic carboxylic acid Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 7.14231848 7.216673586 6.621538768 7.131372574 7.419164758 6.905535517 6.764329903 111022764 bphF1 Organic Remediation Aromatics Polycyclic aromatics Rhodococcus sp. RHA1 8.808168422 8.958900846 8.209438436 8.064189177 8.355525696 8.576506145 8.079596203 8.321529021 8.126239451 8.089931385 8.176749693 78186356 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Pelodictyon luteolum DSM 273 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon luteolum; 7.458711336 7.421438387 7.747787567 7.785009584 7.273321454 7.944615765 7.298037034 7.074087063 7.516499705 138893684 gyrB other category gyrB Geobacillus thermodenitrificans NG80-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermodenitrificans; 8.168721046 8.48551752 8.614022514 8.585717092 8.506338971 8.318735296 8.487198255 8.300807033 262188401 hrcA Stress Heat shock Aeromicrobium marinum DSM 15272 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Aeromicrobium;species:Aeromicrobium marinum; 8.647457631 8.499998547 9.004129509 9.237758573 8.675362703 9.094969019 8.82848813 8.811726102 62424023 ppx Phosphorus Phosphorus utilization Brevibacterium linens BL2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium linens; 7.825746862 7.241670844 7.545819592 8.18187553 7.771257011 7.52485615 7.509298581 7.854222932 227990266 glnA Stress Nitrogen limitation Meiothermus silvanus DSM 9946 7.620993355 7.841211081 7.652495847 7.250318809 7.535333507 7.756046317 7.595366026 7.530198427 7.66866749 222525258 atzA Organic Remediation Herbicides related compound Chloroflexus sp. Y-400-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus; 7.58989129 7.404135928 7.955818708 7.942707718 7.724445306 7.996082946 7.890019773 114308065 CueO Metal Resistance Copper Nitrosomonas eutropha C71 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas eutropha; 7.947446528 7.943316394 7.342956711 7.557030326 7.173402417 7.258894029 7.089494439 7.379501926 154160390 ahpC Stress Oxygen stress Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.699858986 8.341942722 7.791055218 8.480690158 8.825343485 8.335221025 8.355759076 8.463070763 8.370040952 8.736336817 8.37280854 218239204 obgE Stress Radiation stress Alicyclobacillus acidocaldarius LAA1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 8.096934315 7.979996963 7.718753353 7.918797189 7.914127887 8.198303844 7.766120725 8.216224351 7.794685603 257897802 srt virulence surface protein Enterococcus faecium Com15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus faecium; 7.553847269 7.350153367 7.413105972 7.458074159 7.451649642 7.392791182 7.387054475 9635596 integrase_tyrosine Bacteria phage REPLICATION Pseudomonas phage D3 order:Caudovirales;family:Siphoviridae; 7.755134095 7.880151732 7.656345098 7.557519706 7.427565355 7.382272777 7.270339073 7.52485615 7.461962659 7.404198607 126460067 mer Metal Resistance Mercury Pyrobaculum calidifontis JCM 11548 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum calidifontis; 7.383837578 7.250520864 7.98877741 7.960285789 7.502512383 8.172884264 7.715460016 7.704475982 220908262 fnr Stress Oxygen stress Cyanothece sp. PCC 7425 8.589762149 8.160714101 7.845765573 7.850895133 7.757169838 7.542308456 7.322957339 8.203980644 7.4792546 7.381818665 7.904121492 113903489 nbaC Organic Remediation Aromatics Nitoaromatics Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 8.089541289 7.860222604 7.399427921 7.686811962 7.666096822 7.602175705 7.551161664 7.393270346 218282843 atzA Organic Remediation Herbicides related compound Eubacterium biforme DSM 3989 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichi;order:Erysipelotrichales;family:Erysipelotrichaceae;species:Eubacterium biforme; 8.131537115 8.319527761 7.356533598 7.059332849 7.36564187 6.929057419 7.06267458 7.784817073 7.277731606 7.347239635 30138811 hrcA Stress Heat shock Nitrosomonas europaea ATCC 19718 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas europaea; 7.724399627 7.557295119 7.371181879 7.042826309 7.458878423 7.504537755 240143719 cap virulence capsule Roseburia intestinalis L1-82 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia intestinalis; 7.799381811 7.415158211 7.602469765 7.319781436 7.447073743 7.782449471 7.221504912 7.264283957 7.446918713 118463578 CDH Carbon cycling Carbon degradation Cellulose Mycobacterium avium 104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 8.250500074 8.17920564 7.691823272 7.574503329 7.73728192 7.923460241 7.38272151 8.294204014 7.523016078 7.21616499 7.550201492 169852960 glx Carbon cycling Carbon degradation Lignin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 8.113621686 8.328773266 7.796678275 7.301960767 7.21632612 7.428857223 7.489799593 7.321914094 7.373856916 7.470254389 210150957 ChrA Metal Resistance Chromium Clostridium nexile DSM 1787 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium nexile; 7.463835481 7.573646638 7.433560282 7.80340901 8.05351071 7.713221031 7.320769256 27350030 ahpC Stress Oxygen stress Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.25893328 8.288284575 7.656164138 7.766258573 7.759962649 7.820407729 7.527484824 8.039067444 7.668535428 7.814983626 7.753577555 9971375 gyrB other category gyrB Microscilla furvescens superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Marinoscillum; 7.090761114 7.499561704 7.255919461 7.96432306 86157399 cytochrome Energy process Energy process Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 8.409337219 8.29401385 8.086442979 7.733499682 7.741490623 8.615064663 7.903585037 7.864121679 7.820054688 7.757414533 62288563 helicase_family_1_Dda_like Bacteria phage REPLICATION Enterobacteria phage RB43 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.213663254 7.462633992 7.244544812 7.694528396 7.148143302 7.063385529 120610787 silC Metal Resistance Silver Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 8.642141726 8.242467216 7.229608268 7.956159297 8.311391513 8.119524336 7.325069758 8.405570462 7.46608267 7.82062648 7.894823345 163670214 glnA Stress Nitrogen limitation Chloroflexus aurantiacus J-10-fl 8.065409254 8.26419441 7.948638053 8.117789651 7.771247925 7.929004604 7.820223779 8.136878841 7.870561216 7.934702017 7.689347033 157679060 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.105573227 7.308307273 6.822075579 7.42200394 62288743 endolysin_glycosidase Bacteria phage LYSIS Enterobacteria phage RB43 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.407702138 6.999613791 7.227203466 124268125 pilin virulence pilin Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 7.733997991 8.248475612 8.329168977 8.318434816 8.078266857 8.559223618 7.871152465 7.984129503 7.987177822 209401968 narG Nitrogen Denitrification uncultured bacterium 7.802628612 8.131082432 7.846991913 8.202171648 7.940691011 8.442279756 7.916932888 7.887541805 7.845099359 219939252 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.78865683 7.813349838 7.597097554 7.656040918 8.161169623 8.009441705 7.650428043 7.773948632 7.697339137 186684278 sigma_24 Stress Sigma factors Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 7.455525158 7.391926508 7.131456262 7.179116183 7.241488349 227508235 gdh Nitrogen Ammonification Lactobacillus brevis subsp. gravesensis ATCC 27305 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus brevis; 8.206717207 8.342984125 8.001098209 8.086419274 7.857971468 7.85144436 7.736791018 8.048505539 8.373073038 8.326977379 7.902183885 152970117 SMR_antibiotics Antibiotic resistance transporter Klebsiella pneumoniae subsp. pneumoniae MGH 78578 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 8.199715819 8.291256725 6.98206725 7.077822143 7.29359418 7.465807473 163841777 hly virulence hemolysin Renibacterium salmoninarum ATCC 33209 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Renibacterium;species:Renibacterium salmoninarum; 8.106433963 8.203927772 7.53332275 7.211698805 7.294856053 7.202640951 6.69182444 7.294150515 7.431128256 227085953 pstB Stress Phosphate limitation Lactobacillus fermentum ATCC 14931 7.429391209 7.458198056 6.9858849 7.176628226 7.05480602 7.178749317 7.455688791 104304383 APS_AprA Sulphur adenylylsulfate reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6.769300488 7.147333343 119715049 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.171640859 7.877388411 8.069100338 7.749282037 8.421372707 7.759916934 7.595115422 7.70538059 170945455 nagG Organic Remediation Aromatics Aromatic carboxylic acid Podospora anserina superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora; 7.917470128 7.510860879 8.063829127 8.122283977 7.824313489 8.033999655 8.104685145 8.014450488 7.806706761 218750966 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.253917072 8.133772957 8.228881671 8.177038086 8.256397634 7.625896443 8.289740189 8.093990966 8.141534265 8.337414281 7.941866592 73762994 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.847592666 8.249532216 170769972 cap virulence capsule Escherichia albertii TW07627 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 8.802421804 8.868799905 8.29677539 8.12266178 8.065186651 7.915672504 8.16282919 8.03283605 8.1205232 8.140554627 8.504689478 125862056 ahpC Stress Oxygen stress Methanoculleus marisnigri JR1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanoculleus;species:Methanoculleus marisnigri; 6.548916625 7.585733895 86357845 SMR_antibiotics Antibiotic resistance transporter Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.132905383 8.541589866 7.759711258 8.145063725 7.985228601 8.791106866 8.003491417 8.042985632 7.376474432 116750312 pstC Stress Phosphate limitation Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 8.345147136 8.32349059 7.634677182 7.497390406 7.526570815 7.414477974 7.595845126 7.640050446 7.107578734 7.683711397 99030513 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 7.613287755 8.528801593 8.762190353 8.15084446 8.463211867 8.154309728 7.922551836 8.277549121 71906686 fnr Stress Oxygen stress Dechloromonas aromatica RCB 8.294837331 8.140432317 7.963534231 7.908502793 7.723045189 8.035572739 7.705311738 8.589775307 8.071097557 8.250708654 8.138058935 223894299 CadA Metal Resistance Cadmium bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 8.020220429 7.624346654 7.886753278 7.084755997 7.042163531 7.507091798 7.637945901 7.678227472 7.786189326 187928195 CopA Metal Resistance Copper Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.460672061 8.179783773 8.086669243 8.34412299 8.158536161 8.330051174 8.425817885 8.147473462 8.151038465 260575859 hydrogenase Energy process Energy process Rhodobacter sp. SW2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 8.125620119 8.047172302 8.150068347 8.466849746 8.289764504 8.242395921 8.129664822 8.075115172 7.980373675 259503210 phoB Stress Phosphate limitation Lactobacillus antri DSM 16041 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus antri; 7.734304779 8.161322357 7.996756308 7.900237409 8.579906809 7.758840573 8.187379736 8.284871812 8.095252495 126435114 proV Stress Osmotic stress Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.843993704 7.796845384 7.607828327 7.63863544 8.085714866 8.249259578 8.062851753 7.831256543 7.925087594 23330206 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Sphingopyxis macrogoltabida superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis; 8.082313423 8.4459695 7.536394934 7.833249641 8.312966837 8.171941035 8.149276099 7.995076258 238916634 clpC Stress Protein stress Eubacterium eligens ATCC 27750 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium eligens; 8.083148618 8.144128845 7.111960106 7.515039416 7.428209302 7.339112708 6.516908655 7.814650542 7.208210071 7.361253467 7.984196898 254416030 sigma_70 Stress Sigma factors Microcoleus chthonoplastes PCC 7420 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus chthonoplastes; 8.253978609 8.414738105 8.065322464 8.142309908 8.08716326 8.014106988 8.000810137 8.498710917 7.805992652 7.637861702 7.915855336 260939506 sigma_32 Stress Sigma factors Vibrio orientalis CIP 102891 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 7.694204703 7.67162392 8.404407211 8.545096232 8.069943079 8.190886444 8.377749235 8.317583039 8.565064476 134094035 gyrB other category gyrB Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 7.121039495 7.291854197 7.443253002 7.820139405 7.145211452 6.81606992 7.373926726 241368098 fnr Stress Oxygen stress Acidovorax delafieldii 2AN 8.122206673 7.903104401 8.166529301 8.304110481 8.140428047 8.328948909 8.393569721 8.696709778 8.448389 193225298 silC Metal Resistance Silver Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 8.711286939 8.759866772 8.430040345 8.188536263 8.833158914 8.362359983 8.54495506 8.658968297 8.912595186 226939099 phoB Stress Phosphate limitation Laribacter hongkongensis HLHK9 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Laribacter;species:Laribacter hongkongensis; 7.764763844 7.809800638 7.689165409 7.915847171 7.992156744 8.199990469 7.886962188 7.886327711 7.83276918 134099560 pimF Organic Remediation Aromatics Aromatic carboxylic acid Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 7.849582826 7.867522702 7.875123729 8.076027363 8.345945058 8.3517764 8.017282963 8.061648876 30026304 ara Carbon cycling Carbon degradation Hemicellulose Bifidobacterium longum superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium; 7.71713457 8.403116486 8.409039593 8.374520447 8.507616747 8.044935031 8.207214747 7.893161892 87136905 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 8.337892918 7.802085273 7.568661012 8.200794633 8.187453828 7.966953978 7.900272722 7.840007516 119637753 DNA_ligase Bacteria phage REPLICATION Yersinia phage Berlin order:Caudovirales;family:Podoviridae;genus:T7-like viruses; 7.441038742 7.35260232 32453269 sigma_70 Stress Sigma factors Hydrogenothermus marinus superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Hydrogenothermaceae;genus:Hydrogenothermus; 7.274854126 7.59727514 7.656790949 7.247757404 7.436136485 7.827413445 7.47950348 7.274336484 7.414063808 222114627 proV Stress Osmotic stress Streptococcus uberis 0140J superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus uberis; 7.169023644 7.152419984 7.267064348 6.61533963 6.733929607 7.278459588 6.982301142 6.888844103 6.932228593 114571615 pimF Organic Remediation Aromatics Aromatic carboxylic acid Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 7.803226353 7.984357858 7.798708215 7.384800849 8.050018092 7.961828565 7.836407239 7.842338674 7.864123718 108803664 pstB Stress Phosphate limitation Rubrobacter xylanophilus DSM 9941 8.693767222 8.945514897 7.917914361 7.747964275 116624978 arcB Stress Oxygen limitation Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 8.045347959 8.447596869 7.535402346 7.264829059 7.567367365 8.059184921 8.063977131 7.681081247 8.094869639 77459945 B_lactamase_C Antibiotic resistance Beta-lactamases Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.304779681 8.369609932 8.453081596 8.602561653 8.55833143 8.302963222 8.730481829 7.991835592 8.856248734 8.802362793 8.618114365 126739877 phn Organic Remediation Herbicides related compound Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.618000653 8.660887156 7.891956808 7.843461174 7.933498781 7.55159668 7.512843327 8.099683358 7.364330064 7.816594638 8.007875513 228615703 katE Stress Oxygen stress Bacillus cereus AH621 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 7.611081211 7.264369336 7.230984042 6.999749959 7.592773087 157862751 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria; 8.422164199 8.259597306 8.163211126 8.187240816 7.980385263 8.367331845 8.223865307 8.136349338 212556417 SMR_antibiotics Antibiotic resistance transporter Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 7.36078769 7.161140841 7.072959789 7.340539446 7.689754243 223586152 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.928099183 8.10496825 8.173388193 37925785 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.009394582 8.101127069 7.424510243 7.359100774 7.179780582 7.024255821 6.87271573 7.523635576 7.136793123 6.844468554 7.362049488 90324323 AceA Carbon cycling Carbon degradation others Photobacterium profundum 3TCK superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 8.029475038 8.336136282 8.084303626 7.923328817 7.757438511 8.071238651 8.163022362 8.16106521 8.07317258 8.066367289 7.801229633 77921109 rubisco Carbon cycling Carbon fixation enrichment culture bacterium superkingdom:Bacteria; 7.336208227 7.314186411 7.584684868 7.159894151 7.480232906 7.810832961 7.469560065 7.682599937 7.411265665 218751038 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.226718465 8.109874178 7.551320992 7.618669324 8.025847161 7.93068953 8.351894426 7.490926247 7.56078029 7.828242542 254438741 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 7.951927656 8.311240569 8.108063641 8.252736155 8.012045917 8.174185655 8.668488049 8.461404903 8.328428986 7.897369373 8.60364102 27353317 ChrA Metal Resistance Chromium Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.9556308 7.852602935 7.629822808 7.585176722 7.596954285 7.556376249 7.794224663 8.036182701 7.843748583 7.830752693 7.626973317 117935080 exoglucanase Carbon cycling Carbon degradation Cellulose Chaetomium thermophilum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium; 7.73794024 8.108332694 7.904476381 7.819236016 8.242166134 8.102636753 8.323064514 7.816769494 8.054742375 190011984 nmoA Organic Remediation Aromatics Nitoaromatics Stenotrophomonas maltophilia K279a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 8.152295392 8.272109927 8.21862466 8.091677572 7.845184121 8.154037467 8.034578714 7.950293431 7.8940658 7.716115044 7.899820585 149233263 fnr Stress Oxygen stress Pedobacter sp. BAL39 7.170297957 6.85424674 7.266722249 15077472 dsrB Sulphur sulfite reductase Desulfovirga adipica superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Desulfovirga; 6.861839387 7.221463882 6.782263123 7.261166313 116187042 pulA Carbon cycling Carbon degradation Starch Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.175425031 7.383029641 7.127134777 121608045 CopA Metal Resistance Copper Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 8.497333655 8.294766376 8.556076771 8.611266458 8.900947709 8.735480135 8.495588871 8.559875913 8.375687041 8.635244936 8.497753008 164602772 CopA Metal Resistance Copper Clostridium bartlettii DSM 16795 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bartlettii; 7.178531006 7.048645999 260630686 clpC Stress Protein stress Jonquetella anthropi E3_33 E1 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Jonquetella;species:Jonquetella anthropi; 8.360220409 8.337001009 7.943095181 7.736660181 7.665215856 7.503489402 7.747794717 8.09000468 8.007071626 8.028188631 8.072602347 87200032 fnr Stress Oxygen stress Novosphingobium aromaticivorans DSM 12444 8.23442185 8.136722074 7.936618958 7.946424817 8.07785682 8.129591776 8.368165226 8.186038994 8.442591123 8.331917558 8.133016626 108461762 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 7.427050289 7.440058352 7.585449884 7.335409918 7.42136812 7.720747823 7.372326853 52348911 pstB Stress Phosphate limitation Bacillus licheniformis ATCC 14580 8.036450403 8.050268985 7.790542491 7.593671014 7.801476572 8.095294199 7.763314024 7.756598088 7.625155768 111024845 dxnA Organic Remediation Aromatics Heterocyclic aromatics Rhodococcus jostii RHA1 7.984312055 8.216564943 8.401536549 8.428212035 8.171742714 8.293927201 8.27968881 8.44396649 8.236466545 7.9029168 7.912987187 163707986 pbrA Metal Resistance Lead Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 7.678672455 7.862578678 7.985934093 8.216494987 7.925180726 8.130454905 7.76148674 8.100009187 8.196910304 78195155 pstB Stress Phosphate limitation Geobacter metallireducens GS-15 7.902520497 8.209868196 7.350021574 7.207578756 7.271315268 7.161343755 7.890372914 26278856 narG Nitrogen Denitrification uncultured bacterium 7.675508809 7.516903824 7.505629642 7.327796792 7.580429294 7.440613109 7.40665555 7.582271818 238717410 ppk Phosphorus Phosphorus utilization Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 7.689608342 8.032084381 6.990351556 7.312569967 7.491629522 7.293023779 7.177761829 151302322 APS_AprB Sulphur adenylylsulfate reductase Desulfarculus baarsii superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfarculales;family:Desulfarculaceae;genus:Desulfarculus;species:Desulfarculus baarsii; 8.41604303 8.508255172 7.53225892 7.367678973 7.585062188 7.711769952 7.42136812 7.895393074 7.340006466 7.593446463 7.821226485 32815765 mer Metal Resistance Mercury Delftia acidovorans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia; 8.578431566 8.312476386 8.279112142 8.353700307 8.312417945 8.223341806 8.564667819 8.399036007 8.203552585 8.274288743 7.634177893 148265510 pcc Carbon cycling Carbon fixation Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 8.126217073 8.283460626 7.946812527 7.624035177 7.54124873 7.382879428 7.604122498 7.886893916 7.617942227 7.752973062 7.440880437 126575362 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Algoriphagus sp. PR1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cyclobacteriaceae;genus:Algoriphagus; 8.397397531 8.66506553 7.710959565 7.792063148 7.797271199 7.710269453 7.711607925 7.913999228 7.846337888 8.082536788 226715059 hrcA Stress Heat shock Laribacter hongkongensis HLHK9 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Laribacter;species:Laribacter hongkongensis; 7.772699177 8.34245371 7.398587065 7.533479043 7.260277154 7.212605157 7.360981092 7.278599705 7.298885221 16262853 BDO Organic Remediation Aromatics BTEX and related aromatics Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 8.072297566 7.886551548 7.509318132 7.734221204 7.653056253 7.907593149 7.498084647 7.832421127 88779685 AceB Carbon cycling Carbon degradation others Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 8.804086608 8.254425662 8.333994087 8.132209985 7.833802473 7.828175814 8.043864189 8.454487396 8.050091846 8.051306808 7.937807828 110819055 alkB Organic Remediation Other Hydrocarbons Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.706745001 8.65931474 8.581099672 8.745401289 8.941872256 8.582316964 8.519032939 8.284360758 8.023470784 28272084 cda Carbon cycling Carbon degradation Starch Lactobacillus plantarum WCFS1 7.087113687 7.120186367 84502232 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 8.491562076 8.237492918 7.887537365 8.061812328 8.057257072 7.735698084 8.21532379 8.214210036 8.088273899 8.116548738 7.787210779 115284366 vanA Carbon cycling Carbon degradation Others Burkholderia cepacia AMMD superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 8.267816282 8.578912304 8.046707763 7.843118763 7.757074697 7.75798706 7.697804656 7.949387678 8.066530781 7.588265363 7.824916093 194473833 major_capsid_protein Bacteria phage STRUCTURAL Morganella phage MmP1 order:Caudovirales;family:Podoviridae;genus:T7-like viruses; 7.505100171 7.373656957 7.438278779 7.15737848 6.854770404 75676783 SMR_antibiotics Antibiotic resistance transporter Nitrobacter winogradskyi Nb-255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 7.953389171 8.091103515 7.261848225 7.791197733 7.956894135 7.768023843 7.399750862 7.780238674 7.168186507 7.555624619 7.311306461 260591939 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Prevotella veroralis F0319 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella veroralis; 8.064729631 8.414006699 7.550691941 8.084765733 8.167310456 7.587130641 8.220808345 8.121581997 7.824352973 8.16894785 270332314 sigma_70 Stress Sigma factors Prevotella bergensis DSM 17361 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bergensis; 7.432978933 7.081584421 7.264902018 7.209744035 7.224500008 7.464817719 15080893 dsrB Sulphur sulfite reductase Desulfotomaculum thermoacetoxidans superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 7.240668905 7.254593993 6.939700399 6.836137438 110734506 rubisco Carbon cycling Carbon fixation Azospirillum lipoferum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum; 8.649763146 8.503716924 7.625253341 8.074658816 8.225826362 8.469154851 8.172462693 8.306503014 8.46164126 8.473885973 8.389794621 88939245 mer Metal Resistance Mercury Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 7.620015963 7.532161736 7.410517991 7.031762824 7.17983556 7.42133272 118501979 CadA Metal Resistance Cadmium Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 8.148326607 8.289414409 7.915574349 8.059005149 7.586206659 7.791583609 8.329229757 8.330338836 8.479835709 8.31588896 8.436966818 253998314 pilin virulence pilin Methylovorus sp. SIP3-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylovorus; 7.991218485 8.362326433 8.049176286 7.932941877 7.850936624 7.898169996 8.167919576 8.241210647 7.82829685 7.841866611 8.263589079 119958728 chnB Organic Remediation Other Hydrocarbons Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 7.772162657 7.870527268 7.77359444 7.7231545 7.881882818 7.963240362 7.747104642 8.071945497 7.974844075 241764259 sigma_24 Stress Sigma factors Acidovorax delafieldii 2AN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax delafieldii; 7.105769604 7.412162152 7.395401602 7.25269552 7.326083373 7.283754341 7.585681826 157285576 narG Nitrogen Denitrification uncultured bacterium 8.13218263 8.173950507 8.004337936 7.8836555 7.749037349 7.899090249 7.44222016 7.731787259 7.657983761 160897322 iro virulence Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.640438138 7.979553508 8.185416905 8.229732837 8.254270754 8.721038624 8.517787364 8.272086413 224965707 amyA Carbon cycling Carbon degradation Starch Erwinia pyrifoliae Ep1/96 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia pyrifoliae; 7.203817881 7.298857197 7.702997463 7.774607654 7.192350484 8.184802755 7.409700263 7.12717502 7.410163058 169243170 nmoA Organic Remediation Aromatics Nitoaromatics Mycobacterium abscessus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.086417861 8.051222792 7.312265933 7.576821708 7.867984122 8.251497814 7.571325409 8.021758334 7.690561514 7.854500212 7.771596204 53759162 AceA Carbon cycling Carbon degradation others Paracoccidioides brasiliensis superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides; 7.83243025 7.565818605 7.443036676 7.193857243 7.382530009 154314140 nagG Organic Remediation Aromatics Aromatic carboxylic acid Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 7.745518532 8.113252846 17231992 fnr Stress Oxygen stress Nostoc sp. PCC 7120 7.968375824 7.653236715 7.668708037 7.284453342 7.276015879 8.072178297 7.64303629 7.201666539 7.67651346 182677915 nagG Organic Remediation Aromatics Aromatic carboxylic acid Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 7.696251637 7.515058912 7.657001133 7.501111524 8.363268519 7.599730416 7.454500434 7.568000392 159174468 pilin virulence pilin Vibrio sp. AND4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.682136053 8.327597309 7.715162503 8.876947554 9.097310098 8.825622396 8.583608243 8.960154651 8.624265054 9.105074943 220907765 pstA Stress Phosphate limitation Cyanothece sp. PCC 7425 7.884475932 7.822008594 7.779567104 7.850206448 7.48225625 7.931755142 7.552902631 7.625915151 7.341919585 83943356 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 7.448105734 7.390684042 7.049991018 6.789709976 6.987298527 7.59548474 7.301554996 7.395654178 162707998 Catechol Organic Remediation Aromatics Other aromatics Streptomyces verticillus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7.970716666 7.916176288 8.116247865 8.293735256 7.851170454 8.533712524 7.886138402 7.771362349 7.763714849 111149586 linC Organic Remediation Pesticides related compound Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 8.494736611 8.646391785 8.492923845 8.468094975 8.587672455 8.627538768 8.38800228 8.168293729 7.868784725 86567075 TerZ Metal Resistance Tellurium Frankia sp. CcI3 7.614634945 7.975309533 7.909538677 7.679241956 7.842538318 8.107039948 8.102925206 7.942498863 7.715755567 110636341 hrcA Stress Heat shock Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 7.344873138 7.525768846 7.462651389 7.489326139 7.008506314 7.352633696 254459654 obgE Stress Radiation stress Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.111637023 8.140943213 7.632972457 7.776429643 7.532035249 7.667556662 7.53146877 7.985209717 7.754958816 7.777179103 7.894473382 257476773 AceA Carbon cycling Carbon degradation others Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 7.609903639 7.584556464 8.235761737 7.997602619 7.737002281 8.177328779 8.054980062 8.172150394 8.211273052 109452507 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.179204743 7.387791469 7.464844024 6.869871649 6.810156973 7.425198807 71067032 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.905862016 7.987643521 7.902611996 7.868602492 8.380626544 8.301183764 8.437726817 8.10587184 8.094283252 150398757 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 8.083961415 7.92794959 7.867575797 7.791288781 7.638165834 7.753670254 7.776564842 7.825029027 7.703912606 194332868 gyrB other category gyrB Prosthecochloris aestuarii DSM 271 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Prosthecochloris;species:Prosthecochloris aestuarii; 7.746496695 8.348522344 8.621639712 8.272842986 8.682190332 227845695 endochitinase Carbon cycling Carbon degradation Chitin Halogeometricum borinquense DSM 11551 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halogeometricum;species:Halogeometricum borinquense; 7.720459279 7.612678777 7.68294956 7.20281578 7.623904224 7.868043785 7.608001239 7.355019731 7.582670075 157376060 cytochrome Energy process Energy process Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 7.698986646 7.862327161 7.465627241 7.557202071 7.906385766 7.936801512 7.952125363 7.467979023 7.666935702 160346549 sigma_70 Stress Sigma factors Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 8.727147645 8.592268004 8.447442654 8.00331056 8.747863047 8.322632538 8.278069943 8.473509448 8.832946978 116668802 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8.241992809 8.461072759 8.211751582 7.770206751 8.370456943 8.302596752 8.258691143 8.235156235 199652691 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.65477395 7.851553585 7.73695191 8.012238349 7.43058441 7.441843103 7.528692645 197629216 ahpC Stress Oxygen stress Thermococcus barophilus MP superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus barophilus; 7.426746537 7.511727494 7.507986452 7.244654431 7.507657985 7.476351294 7.490886332 7.425806625 7.499088146 70673027 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.562299955 7.393038645 7.290312311 7.089504807 7.067596702 7.624786751 7.21805889 7.209882439 7.382776378 224367523 grpE Stress Heat shock Desulfobacterium autotrophicum HRM2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium;species:Desulfobacterium autotrophicum; 7.520136123 7.541167463 7.522751698 7.887712201 7.401087711 7.282783656 7.73869041 120590704 hrcA Stress Heat shock Acidovorax citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 7.843717899 8.164993773 7.93405859 8.044153245 7.466982 7.458000194 8.344494336 7.910658508 7.864007197 8.196434825 8.195638062 119225904 Catechol Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 7.97581517 7.873818898 7.572128668 7.71968016 8.433213171 8.289434003 8.078241594 7.993249821 8.254443274 126235717 glnA Stress Nitrogen limitation Mycobacterium sp. JLS 8.130960659 8.198269697 8.629990043 8.281653386 8.206041428 8.470264722 8.416137923 8.210727071 8.179364518 8.360192817 8.038134332 15921891 nitrogen_fixation_genes Bioleaching Nitrogen Sulfolobus tokodaii str. 7 7.484613301 7.461394643 7.568651599 7.5803476 6.91879358 7.51330303 7.601329405 209963783 obgE Stress Radiation stress Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 8.131493835 7.509697393 8.211696719 7.878823128 8.245087794 7.697843941 7.729109029 7.960077141 239807827 gdh Nitrogen Ammonification Geobacillus sp. WCH70 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.752240156 7.898388173 8.207040259 8.12363684 7.88505463 8.168871683 8.077072972 8.125678689 8.240287103 160901148 alkH Organic Remediation Other Hydrocarbons Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.057516234 7.523654779 7.524342321 7.397213321 6.692775175 7.787346522 7.226576227 7.189325275 7.747824486 260654504 pstA Stress Phosphate limitation Jonquetella anthropi E3_33 E1 7.768835556 7.634919595 7.723133377 7.163332754 7.666596806 7.486387478 7.262779417 7.790820758 179342840 nitA Organic Remediation Aromatics Other aromatics Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 7.561389236 8.041350235 7.833672282 7.353562826 8.047992501 7.920954593 7.764553982 7.600756471 7.851595318 159040200 clpC Stress Protein stress Salinispora arenicola CNS-205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 8.227954969 8.01374847 8.190837202 7.211471377 7.928042405 7.928047208 7.98885923 8.315978766 7.455158652 74317423 narJ Stress Oxygen limitation Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 7.454500426 7.536669368 7.325319954 7.093133921 7.478196363 7.608491143 7.322725601 7.507261564 198267119 pimF Organic Remediation Aromatics Aromatic carboxylic acid Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 7.586142086 8.259655157 7.962474189 8.085168197 8.240520616 7.969198786 8.281457965 7.958307321 126635945 alkB Organic Remediation Other Hydrocarbons Nocardia sp. SoB superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia; 8.047681364 8.100582259 8.325157664 8.50921902 8.293246655 8.629213763 8.494208726 8.690267485 261363710 sigma_70 Stress Sigma factors Neisseria mucosa ATCC 25996 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria mucosa; 7.452204213 7.63892446 7.296390028 7.59995199 7.859297311 7.752606988 7.032996078 7.57453292 254424358 pstA Stress Phosphate limitation Synechococcus sp. PCC 7335 8.023526338 8.310591643 8.463244865 8.203967393 8.544117169 8.12363684 8.483370708 8.068377718 8.400896013 8.232300818 7.876250146 133754607 phenol_oxidase Carbon cycling Carbon degradation Lignin Russula exalbicans superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Russulales;family:Russulaceae;genus:Russula; 8.259405526 8.084775303 7.714758122 7.927279377 7.669677099 8.012159936 7.829965921 7.330906541 186683024 P450 Energy process Energy process Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 7.577891822 7.370192365 7.271472948 7.298640638 7.461428289 7.943358096 7.374795922 7.169423044 7.307186349 256753704 glnA Stress Nitrogen limitation Clostridium papyrosolvens DSM 2782 7.89188067 7.818652005 7.666562136 7.998015532 8.143450437 8.085894077 8.144129442 8.105828191 7.902165708 146406844 nagI Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.161661527 8.092435408 7.89175838 7.7920462 7.422400664 7.712664617 7.434151823 7.615130354 7.65005239 237758312 ureC Nitrogen Ammonification Corynebacterium kroppenstedtii DSM 44385 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium kroppenstedtii; 7.052107812 7.292001228 6.930518318 7.566111698 7.124750223 7.422258439 114341331 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 8.16709019 8.19850075 8.360525552 8.384709434 8.02198918 8.282072205 8.250203937 8.470611047 8.488330465 270153345 obgE Stress Radiation stress Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.542622349 7.462747021 7.212830867 7.624375408 7.428930079 7.477587114 212544566 ABC_antibiotic_transporter Antibiotic resistance transporter Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.924771607 8.272499864 7.242661493 7.285039357 7.268709076 6.9680668 6.928908144 7.84189527 7.166375957 7.144201174 7.541101219 24421419 nirS Nitrogen Denitrification uncultured organism 7.717924084 8.286166548 7.514515395 7.296045567 7.245483478 7.508045738 7.374352344 7.225666363 7.532499498 116098108 ahpC Stress Oxygen stress Lactobacillus brevis ATCC 367 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus brevis; 8.292319304 8.178094625 8.098131324 7.932408498 7.890326264 7.742364175 8.150476649 8.027756307 7.838701734 7.405174893 8.10678629 261877019 fnr Stress Oxygen stress Selenomonas noxia ATCC 43541 7.132784066 7.201025457 7.505421248 7.046850096 224521780 sigma_24 Stress Sigma factors Bacteroides cellulosilyticus DSM 14838 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 7.206469438 7.126588489 7.100920377 6.828997576 7.419290939 111019985 pcpE Organic Remediation Herbicides related compound Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.327873332 8.625558788 8.732300318 8.686221113 8.537282407 8.854092417 9.076122035 8.217639326 8.774496138 8.385908252 8.307335526 162449729 todF Organic Remediation Others Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 7.867112927 7.622852772 7.386792778 7.131456262 7.753878303 7.529071998 7.553439995 7.398719639 7.674251123 189193891 pchCF Organic Remediation Aromatics BTEX and related aromatics Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7.466269489 7.630207887 7.485614423 7.749445145 7.822150505 254509901 pstA Stress Phosphate limitation Rhodobacteraceae bacterium KLH11 7.295739731 7.122808372 7.309632046 7.093392403 7.048532451 241871526 clpC Stress Protein stress Weissella paramesenteroides ATCC 33313 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Weissella;species:Weissella paramesenteroides; 7.440534795 7.209865473 7.094940121 6.629037125 7.371070043 90579395 pstB Stress Phosphate limitation Vibrio angustum S14 7.097533016 6.999501424 94449468 mcrA Carbon cycling Methane Methane production uncultured archaeon superkingdom:Archaea; 8.293519934 8.699479903 9.028498857 8.785393223 8.927573945 8.657508202 8.760629343 8.834152699 8.572074272 71892295 ureC Nitrogen Ammonification Candidatus Blochmannia pennsylvanicus str. BPEN superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Candidatus Blochmannia;species:Candidatus Blochmannia pennsylvanicus; 7.466976432 7.14622991 167541354 mcrA Carbon cycling Methane Methane production uncultured bacterium 7.727382084 7.915300551 7.237371608 6.990043857 7.695935551 7.776580302 7.658991651 7.621270731 7.715575755 83372376 xylA Carbon cycling Carbon degradation Hemicellulose Rhodobacter sphaeroides ATCC 17029 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 7.959544544 8.072050959 7.249607474 7.382463922 7.30764246 7.119332016 7.013776611 7.608113988 7.235647253 7.256684644 149123073 CopA Metal Resistance Copper Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 8.028891647 7.923020499 7.825200719 7.791021763 8.214394613 8.211706532 8.191723813 8.353979327 8.315600665 8.288729971 8.363164403 260417757 oxyR Stress Oxygen stress Silicibacter lacuscaerulensis ITI-1157 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria lacuscaerulensis; 8.154638052 8.23429067 7.8128355 7.846202065 7.865535402 8.138931576 8.011491852 8.035261636 8.269556376 8.407982593 7.969337133 251827301 oxyR Stress Oxygen stress Gallionella ferruginea ES-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Gallionella;species:Gallionella capsiferriformans; 7.780035783 8.035483522 7.910802334 8.022582071 7.959323665 7.694155404 7.508752224 163261036 SMR_antibiotics Antibiotic resistance transporter Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 8.188900544 8.591153072 7.860645116 7.749067626 7.986969829 8.311035296 7.915127158 8.6191462 7.767074683 7.956350882 7.655553853 229917534 ahpF Stress Oxygen stress Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 7.252457573 7.611828441 7.611215024 7.753512235 7.919975733 7.340501223 7.374840788 7.554862455 167771672 TerD Metal Resistance Tellurium Anaerotruncus colihominis DSM 17241 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Anaerotruncus;species:Anaerotruncus colihominis; 7.960610228 8.030164915 7.716007965 8.260396096 8.287316503 7.922080604 7.94536892 7.821206871 8.261651201 91689746 MFS_antibiotic Antibiotic resistance transporter Burkholderia xenovorans LB400 8.205188348 8.201459845 8.098338329 7.674961647 8.246573115 7.662390153 8.233062668 8.340382424 7.884132507 85035932 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 6.966365193 7.171769714 8.042577074 7.996943435 7.265498976 7.36703902 7.1240978 7.303706919 116065321 sigma_70 Stress Sigma factors Synechococcus sp. BL107 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.579680733 8.532200862 8.34504082 8.519562805 8.529333997 8.152429529 8.439361182 8.164928663 8.135967386 154175542 ahpC Stress Oxygen stress Campylobacter curvus 525.92 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter curvus; 8.37839776 8.356259668 7.911871056 7.845436914 8.047213107 8.141464688 7.88102962 8.240542139 8.076913826 8.343429159 8.105739687 114566319 atzA Organic Remediation Herbicides related compound Syntrophomonas wolfei subsp. wolfei str. Goettingen superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Syntrophomonadaceae;genus:Syntrophomonas;species:Syntrophomonas wolfei; 7.963053015 7.667651966 7.633421841 7.896558683 7.4652749 7.641432964 3618279 dxnA Organic Remediation Aromatics Heterocyclic aromatics Sphingomonas sp. 7.360671521 7.272245696 7.415116714 7.338913223 7.368633691 7.634056108 7.439962561 7.038458867 7.322144424 118470723 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.083794976 8.359886739 8.093759617 7.891599852 7.595182424 7.824272225 7.906139035 8.160047132 7.944811544 7.620992687 7.769215149 55978130 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.194803248 8.323069969 8.146251407 7.871859001 8.073682886 8.215323221 7.899008502 8.57873071 7.87683755 7.853943151 7.878353565 91203049 dnaK Stress Heat shock Candidatus Kuenenia stuttgartiensis 7.986550139 7.808400757 7.747821454 7.841057519 7.665038002 7.686812897 7.205300577 7.814628224 119954182 SMR_antibiotics Antibiotic resistance transporter Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.22752006 8.126132759 7.921980342 8.021561648 8.022022275 7.945465429 7.957327706 8.003385686 7.546055957 91793002 ArsC Metal Resistance Arsenic Shewanella denitrificans OS217 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella denitrificans; 8.11386337 8.142341913 8.248814805 8.389293065 8.875298144 8.289882023 8.958364344 8.897527415 8.650474884 124514669 MFS_antibiotic Antibiotic resistance transporter Leptospirillum sp. Group II UBA superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 8.159751439 8.459753892 7.915753687 7.678677511 7.719814212 7.219305676 6.910709647 7.434447397 7.353595917 7.383515647 116623500 arsM Metal Resistance Arsenic Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 8.94976578 9.460320555 8.541787928 8.468508157 8.382004708 8.187162936 8.262442954 8.544364148 8.40672237 8.448421093 8.605931135 120591184 pimF Organic Remediation Aromatics Aromatic carboxylic acid Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 7.757953582 7.635371489 7.619697248 8.050859716 7.290371288 8.043716518 7.711777459 7.354314982 89331212 groEL Stress Heat shock Chlamydophila felis Fe/C-56 superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Chlamydiaceae;genus:Chlamydophila;species:Chlamydophila felis; 7.991742302 8.255780416 7.93273419 7.756109846 8.29782252 8.035113971 8.357836536 8.096131297 8.230586429 118435542 trzN Organic Remediation Herbicides related compound Stappia aggregata IAM 12614 8.309431259 8.361468892 7.966747663 8.244156072 7.993957924 8.1241253 8.335190142 8.329498227 8.366531538 7.835711622 8.115046795 19171198 phenol_oxidase Carbon cycling Carbon degradation Lignin Gaeumannomyces graminis var. tritici superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Gaeumannomyces;species:Gaeumannomyces graminis; 8.385575635 8.598693911 8.081535101 8.084223484 7.962057048 7.739148765 7.925161772 7.95630945 7.921660126 7.42005382 146192737 nagG Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.086144171 8.203182754 7.987284215 7.889957229 7.848804679 7.762034622 7.924280492 8.009437935 8.188234353 7.988900112 7.8777333 219551236 nmoA Organic Remediation Aromatics Nitoaromatics Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.995804009 8.17827985 7.029305705 6.817886761 95110018 Arylest Organic Remediation Aromatics Other aromatics Pseudomonas superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae; 7.744642853 7.331211366 119353328 dsrA Sulphur sulfite reductase Chlorobium phaeobacteroides DSM 266 7.220344776 7.227090428 170134506 bphA Organic Remediation Aromatics Polycyclic aromatics Burkholderia ambifaria IOP40-10 7.306749093 7.494025341 7.06917846 7.672189565 7.396844793 7.427435744 7.399010473 218782651 sigma_24 Stress Sigma factors Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 7.857116272 8.224268102 7.735090401 7.790216077 7.643787643 7.653300229 7.866157321 7.923227378 7.789901333 7.585749438 7.406668872 114320425 sox Sulphur Sulphur oxidation Alkalilimnicola ehrlichei MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 7.961360198 8.106471561 7.742074721 8.043183338 7.821061503 7.716539665 8.131578628 8.173792325 8.200757513 7.973837695 7.940905343 111145985 catB Organic Remediation Aromatics BTEX and related aromatics Pseudomonas sp. MT1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.088456932 7.197825301 7.148331909 6.56248661 7.449485367 7.028672415 7.031198 70930923 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9.000131969 8.73471886 8.59370441 8.678903473 8.728036172 8.696157651 8.710054565 8.852661106 8.687658902 8.951215854 8.701655777 206578698 narH Stress Oxygen limitation Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 8.312263306 8.223582331 7.833450175 7.769200595 7.958625962 7.419576485 7.854918342 7.941863508 7.743787109 7.944459822 7.714847202 15794636 alkK Organic Remediation Others Neisseria meningitidis Z2491 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria meningitidis; 7.721506138 7.516944852 7.554201361 7.269596633 7.270889106 7.357567677 7.669855842 7.830711427 18147171 gyrB other category gyrB Alcanivorax sp. Haw-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 7.876231553 7.728227751 7.954936509 84702127 grpE Stress Heat shock Parvularcula bermudensis HTCC2503 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 8.448942675 8.763998491 8.712358921 8.489488258 8.159258458 8.424575059 8.710885834 8.667277267 8.460388525 8.007995171 8.418519137 45201464 ahpC Stress Oxygen stress Ashbya gossypii ATCC 10895 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Eremothecium;species:Eremothecium gossypii; 7.955358513 7.345442758 7.923421099 7.235323019 7.864883288 7.727073269 7.47999438 7.910884876 7.742078586 119944300 obgE Stress Radiation stress Psychromonas ingrahamii 37 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas;species:Psychromonas ingrahamii; 7.473234538 7.642013477 7.384247047 7.337868218 7.620213334 7.877537734 7.402694162 7.345110793 7.607195155 262183693 proV Stress Osmotic stress Corynebacterium aurimucosum ATCC 700975 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium aurimucosum; 7.365404217 7.754069066 7.874420416 7.866458171 7.46418399 7.893058365 7.901084036 7.844307571 7.848457798 4980818 CopA Metal Resistance Copper Thermotoga maritima MSB8 8.040647305 8.433291593 7.536971311 7.661677551 7.751932142 7.714718602 7.815621073 8.078645446 7.663612684 7.647934884 7.677192298 87198564 benD Organic Remediation Aromatics Aromatic carboxylic acid Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 8.013703912 8.347979435 7.670003189 7.668371661 7.449692416 7.364306463 7.585802564 7.797618973 7.773331254 7.547248243 7.580874682 59478733 pimF Organic Remediation Aromatics Aromatic carboxylic acid Vibrio fischeri ES114 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Vibrio fischeri; 7.54771293 7.819154657 7.827918292 7.229366595 7.736826232 7.826539458 8.053715083 7.572629722 110647952 AmiE Organic Remediation Aromatics Other aromatics Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 8.064782771 8.25083587 7.74432992 7.892139496 7.740537408 7.695081518 7.566669146 8.140299261 7.695624686 7.950094152 7.59955677 93354572 pheA Organic Remediation Aromatics Other aromatics Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.55850384 8.519000623 8.167306579 8.555741379 8.642620672 7.993884096 8.379930201 8.334864653 8.52242936 209502178 ChrA Metal Resistance Chromium Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.095080656 8.220090902 7.858471635 7.77123257 7.774425333 7.628190163 8.170446306 7.998144042 8.232022653 7.71741495 77977714 SMR_antibiotics Antibiotic resistance transporter Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 7.496552042 7.605604256 7.549679616 7.186432236 7.70483917 7.798916814 7.842222546 8.072521918 7.403818101 170777770 bclA Organic Remediation Aromatics Aromatic carboxylic acid Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 8.646520913 8.127190823 8.0704425 7.709613752 7.689875881 8.24830294 8.16045984 7.909030004 8.128397231 7.712534271 194310708 narI Stress Oxygen limitation Prosthecochloris aestuarii DSM 271 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Prosthecochloris;species:Prosthecochloris aestuarii; 7.911900723 7.934893271 7.7024555 7.739361092 7.997480959 8.031372503 7.962254104 7.769159678 7.969538688 67986765 gyrB other category gyrB Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 8.001293493 7.726433402 7.878125102 7.219054319 7.627224042 7.914650567 7.670304329 7.593933969 7.370511389 114225564 gyrB other category gyrB Alkalilimnicola ehrlichei MLHE-1 7.885205594 7.823481575 7.400358633 7.63925872 7.413420368 7.660815404 7.423740358 8.330807679 7.889538404 7.863489983 30909238 ArsC Metal Resistance Arsenic Agrobacterium sp. 5B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 7.555762994 7.472362536 7.30477209 7.467615276 7.017054932 7.55510664 9635643 single_strand_annealing_protein Bacteria phage REPLICATION Pseudomonas phage D3 order:Caudovirales;family:Siphoviridae; 7.325141846 7.688974963 7.867669231 7.520234583 7.946222247 7.734440573 7.752590715 8.314956095 148283178 endochitinase Carbon cycling Carbon degradation Chitin Lecanicillium psalliotae 7.514987386 7.448435152 7.205320638 7.321690574 7.217938217 7.215234433 7.406429199 7.60569542 71001996 amyA Carbon cycling Carbon degradation Starch Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 7.896152547 8.238139503 8.439433689 8.573952241 8.754836664 8.201541852 8.956867141 8.730149486 8.59220174 117949590 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 8.236749969 8.370269407 7.378015405 7.446361316 7.62208577 8.053163318 7.602403999 8.204163808 7.417717093 7.274027965 7.660090029 83772403 ara_fungi Carbon cycling Carbon degradation Hemicellulose Aspergillus oryzae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 8.493874714 8.214713566 7.660953678 8.256444018 8.708145801 8.119446488 7.652195296 8.095843069 8.215850055 219850645 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 8.348617248 8.257283418 8.253192313 7.851683329 8.842884339 8.441861691 8.533327241 8.130681493 27544670 gyrB other category gyrB Legionella erythra superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella; 6.80977214 7.213219665 7.301887753 6.802405564 7.394712726 74318503 dsrA Sulphur sulfite reductase Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 8.597454314 8.276324607 7.936662978 8.369701486 8.699533049 8.494408281 8.697267837 7.852495068 8.434872718 258636816 iro virulence Pantoea sp. At-9b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 7.410402394 7.362227361 7.592883843 7.686169497 7.045402853 7.990421367 7.348331082 7.441973082 7.493241989 152262 fnr Stress Oxygen stress 7.803913333 7.896358975 7.848142172 7.915680913 7.929159465 7.988711385 7.914795913 46307998 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.606121746 7.389023774 7.497881159 7.627239888 88782772 sigma_70 Stress Sigma factors Polaribacter irgensii 23-P superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Polaribacter;species:Polaribacter irgensii; 8.439669393 8.761281396 7.712599309 7.945075898 7.901708868 7.84585098 7.661554984 8.065954694 8.020070853 7.934366443 148342406 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.089006469 7.170139122 7.317649752 7.047768593 7.462711703 83845704 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 7.401685437 7.627121686 7.388664853 7.532324031 7.385962607 7.642350718 7.741385545 7.562539205 7.493711243 121495612 narG Nitrogen Denitrification uncultured bacterium 7.684402872 7.711436259 7.843009148 7.723430166 7.647702355 8.06665767 7.69269964 7.775377119 7.611478431 145299277 nrfA Nitrogen Dissimilatory N reduction Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 7.790770082 7.378121747 7.301464175 7.482299411 7.144167388 7.612978055 7.489309917 268318596 Tet Antibiotic resistance other Lactobacillus johnsonii FI9785 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus johnsonii; 7.815920849 8.002451201 7.485751006 7.409503242 7.053159287 6.937434445 7.79088478 7.116768018 7.067593434 7.408599708 194595541 pstB Stress Phosphate limitation Halomonas sp. HAL1 7.900319247 8.052116308 7.281382402 7.09168265 7.443192243 7.196563841 7.199981341 7.165570658 7.22145298 7.35183274 280964666 ABC_antibiotic_transporter Antibiotic resistance transporter Frankia sp. EuI1c superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.054758594 8.040929319 7.486727161 7.773451316 7.648417022 7.827524473 8.157559912 7.014756337 7.246688962 7.545373648 206686431 gyrB other category gyrB Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.852684104 8.702489597 8.529067392 9.024829513 8.365016951 8.975921572 9.052575713 8.735452633 145553808 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 7.201642178 7.178077188 119025989 amyA Carbon cycling Carbon degradation Starch Bifidobacterium adolescentis ATCC 15703 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium adolescentis; 7.894131704 7.89372843 8.186255568 7.924767923 7.71775768 8.152578812 8.022587566 150027044 glnA Stress Nitrogen limitation Sinorhizobium medicae WSM419 8.075338305 8.24172863 8.258889297 7.984832861 8.083824661 8.187152897 8.355169137 8.434877412 8.507254476 8.498598316 8.429274003 158331884 MFS_antibiotic Antibiotic resistance transporter Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 7.647180891 7.575416877 7.542926712 7.536646389 7.613927606 7.521404873 7.51764692 7.559472691 119957954 tfdA Organic Remediation Aromatics Chlorinated aromatics Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 7.714614323 7.472620921 7.811127711 7.948397815 7.668908539 7.578406315 7.44840218 7.870461128 270045177 B_lactamase_C Antibiotic resistance Beta-lactamases Serratia odorifera 4Rx13 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia odorifera; 8.627460899 8.927250392 8.194215457 7.965603036 8.336266945 7.964670328 7.77440586 7.968147157 8.201950672 87136621 sigma_24 Stress Sigma factors Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 8.910062266 9.202686633 8.978826599 8.684759034 8.435009222 8.999745065 9.11411104 8.74295991 111147609 tfdA Organic Remediation Aromatics Chlorinated aromatics Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 7.726193698 7.947125339 7.801608163 7.955708361 7.782127621 7.930179985 8.232919016 8.104546508 1914799 cellobiase Carbon cycling Carbon degradation Cellulose Thermococcus sp. superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus; 7.765412766 8.029065311 7.885461726 8.261143004 8.068425197 8.059403975 8.2744391 7.889169552 20906296 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Methanosarcina mazei Go1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina mazei; 8.55320332 8.727017228 8.210824738 8.004707118 7.986761298 7.749807406 7.70750432 7.801356435 7.891921748 7.691963665 7.982592486 119537807 CopA Metal Resistance Copper Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.503072115 8.235373785 8.334454582 8.383909274 8.243825255 8.644453562 8.598386603 8.339530718 8.567631343 8.697622437 8.21650121 262371724 ahpC Stress Oxygen stress Acinetobacter junii SH205 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter junii; 7.330549501 7.286706158 7.267538263 6.979340607 6.907906307 7.598338246 112441720 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 7.840064208 7.901165962 7.573755712 7.520405375 7.916955133 7.914177329 7.839753182 7.82331131 7.402910493 283844297 sigma_70 Stress Sigma factors Bacillus cellulosilyticus DSM 2522 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cellulosilyticus; 7.466217928 7.293541437 7.491585048 7.442699494 7.492397398 7.82801527 7.704719314 7.495281499 7.636917426 219541255 AceA Carbon cycling Carbon degradation others Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 8.338132775 8.193777042 8.413420782 8.181949369 7.99644644 8.289274037 8.106625431 8.25253181 8.139613866 8.31516477 8.034326876 154297971 ara_fungi Carbon cycling Carbon degradation Hemicellulose Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 8.082595723 8.22982538 7.12212507 7.402135957 118738719 ophC Organic Remediation Aromatics Aromatic carboxylic acid Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 7.742357363 7.593604273 7.513764778 7.643043441 7.554400399 7.951444767 7.339116745 7.456681336 6.996906502 261286014 clpC Stress Protein stress Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.355757219 7.274126719 7.05570045 6.952750368 224606288 pstA Stress Phosphate limitation Natrialba magadii ATCC 43099 7.98977691 8.085275823 8.031887363 8.192753098 7.812603081 7.940664388 8.238929642 8.268594642 8.117048578 7.8563807 8.116229166 160900345 phoB Stress Phosphate limitation Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.070038771 8.214505208 8.320532379 7.778475227 8.519789089 8.124665117 8.339909123 8.257018337 7.825535884 119897205 TerC Metal Resistance Tellurium Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8.311641118 8.147919187 8.169397136 8.696114532 8.687716585 9.254559771 8.814037387 8.553401956 8.457681104 8.720130557 8.537320692 113530108 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 7.605626623 7.459225433 7.957513931 8.009451339 7.592754902 8.078606817 7.641487259 7.747544395 8.292923299 15805860 fnr Stress Oxygen stress Deinococcus radiodurans R1 7.670538408 7.636245181 7.277052339 7.431123238 7.509560313 7.511584893 7.633762573 7.395450316 218273128 TerD Metal Resistance Tellurium Roseburia intestinalis L1-82 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia intestinalis; 6.956934722 7.286840368 7.1867612 7.79815147 114767551 ChrA Metal Resistance Chromium Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.77013758 8.663631815 8.682471466 8.268743619 8.643105942 8.414430176 8.483933448 8.601407199 7.829595659 262092494 gyrB other category gyrB Ruegeria scottomollicae superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8.667941886 8.241956785 7.623940578 8.140451548 8.435761839 8.859873503 8.328353085 8.315959237 8.095333032 8.373643231 8.149870877 189189022 pectinase Carbon cycling Carbon degradation Pectin Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7.93901414 8.096382343 7.325796839 7.420164264 7.374146279 6.876322576 7.039104746 7.542156573 7.223956951 7.239440384 7.51663856 264674681 Tet Antibiotic resistance other Caulobacter segnis ATCC 21756 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 7.776559747 7.794822759 7.654848027 7.396050189 7.714766411 7.902727217 7.650133187 7.565886472 7.756108943 262224427 pilin virulence pilin alpha proteobacterium HIMB114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales; 7.429563971 7.366823359 7.034283733 7.508276471 119448373 hrcA Stress Heat shock marine gamma proteobacterium HTCC2143 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.792017924 8.042013629 8.672043209 8.827568445 8.485754711 8.698896126 8.399403952 8.070224676 8.282171916 15687 DNA_ligase Bacteria phage REPLICATION Enterobacteria phage T3 order:Caudovirales;family:Podoviridae;genus:T7-like viruses; 8.134136983 8.44729613 7.683427883 7.640569737 7.84077895 7.807439126 7.180327129 7.961999532 7.327572147 7.304290857 7.526920688 146401259 drug_resistance_transporter Bioleaching Antibiotic Resistance Acidiphilium cryptum JF-5 8.096717823 8.144907236 7.172509161 7.490703528 8.060818549 8.283874091 7.479381425 8.163180641 7.799455943 7.631741754 7.574136485 114337263 pimF Organic Remediation Aromatics Aromatic carboxylic acid Syntrophomonas wolfei subsp. wolfei str. Goettingen superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Syntrophomonadaceae;genus:Syntrophomonas;species:Syntrophomonas wolfei; 7.318652527 7.399157179 7.80488129 7.943800201 7.498802161 7.921625141 7.475810744 7.700555923 7.726836706 197282326 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.854032445 7.61810242 7.694048626 7.792083511 8.08766307 8.011525103 8.125129146 7.958704425 7.915539876 598355 mnp Carbon cycling Carbon degradation Lignin Phanerochaete chrysosporium superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 7.313703012 7.443034849 8.007909006 8.251019472 7.532274889 8.044698248 7.57165724 7.599553911 7.4981585 218129907 cda Carbon cycling Carbon degradation Starch Bacteroides eggerthii DSM 20697 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides eggerthii; 8.17131213 7.996170597 7.868463799 7.707018003 8.044219013 7.990608681 8.138236413 8.085438591 7.665965416 116628890 nplT Carbon cycling Carbon degradation Starch Lactobacillus gasseri ATCC 33323 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus gasseri; 7.227535683 7.219776929 7.441885016 148654066 pstC Stress Phosphate limitation Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 7.234765723 7.074879842 182439074 amyA Carbon cycling Carbon degradation Starch Streptomyces griseus subsp. griseus NBRC 13350 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 8.2448648 8.075585362 8.152293194 8.495699759 8.26535202 8.139266374 8.689773134 7.961685259 8.457885945 8.182509913 8.664124516 95113129 CadA Metal Resistance Cadmium Pseudomonas 8.195707058 8.176514095 8.034066363 8.038492059 8.058149955 8.497438344 8.104908294 7.852735119 7.863229402 6735515 alkK Organic Remediation Others Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.035291055 7.128880831 116622205 exaA Organic Remediation Chlorinated solvents Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 7.482665424 7.390196604 8.131945055 8.365640845 7.894341701 8.262180912 7.728632656 7.783977262 7.995644823 240103909 pstB Stress Phosphate limitation Thermococcus gammatolerans EJ3 7.006785592 7.292996416 7.31798337 7.498902221 6.80185446 7.51750825 7.256395973 7.095562022 55772088 ZntA Metal Resistance Zinc Thermus thermophilus HB8 8.182112982 8.235953197 8.164893955 8.056697941 8.161010731 7.411846663 7.962745016 7.963204157 8.152646101 8.088576564 145571503 pulA Carbon cycling Carbon degradation Starch Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 7.888713757 8.075356127 7.842189474 7.926506919 7.849224366 7.989505884 8.362539839 8.325919051 7.70171515 115363754 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 8.119542108 8.595929946 7.630566505 7.880114778 7.815542381 7.585083744 7.198045874 8.029898167 7.898008275 7.66852566 8.290155115 9630470 scaffold Bacteria phage STRUCTURAL Enterobacteria phage N15 order:Caudovirales;family:Siphoviridae;genus:N15-like viruses; 7.362693112 7.858800984 8.2397128 8.512090229 7.545140623 7.581739579 7.974955857 7.920804256 186894973 iro virulence Yersinia pseudotuberculosis PB1/+ superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia pseudotuberculosis; 8.264585767 8.165791242 7.344577738 7.682431729 7.981363221 8.070579702 7.170014994 7.567871552 7.59204426 8.001075496 19909531 gyrB other category gyrB Thiocapsa rosea superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa; 9.285615517 8.714381055 8.879068637 8.422780268 8.502503844 8.50853882 8.633851797 8.760518 16508807 glnA Stress Nitrogen limitation Pseudomonas sp. 7.905338437 7.785561138 7.574939439 7.245337635 7.301823331 7.756009799 7.759010354 7.505535799 7.801733881 110549563 nifH Nitrogen Nitrogen fixation Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.481095555 8.330673778 7.910091671 7.813571062 7.938009529 7.909592682 7.848701831 8.044825367 7.944401763 7.59472356 8.206764997 261281552 mannanase Carbon cycling Carbon degradation Hemicellulose Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.542851145 7.376769983 7.438318134 7.139890333 7.525851156 7.381371644 7.725955203 7.623856648 7.581290676 183186802 AceB Carbon cycling Carbon degradation others Paracoccidioides brasiliensis superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides; 8.716924757 8.345318375 7.638821225 7.574671646 8.067506901 8.199653258 7.603707976 7.818559193 7.612428256 8.031579114 197626528 pstB Stress Phosphate limitation Cyanobium sp. PCC 7001 7.143778522 7.450798693 7.59779465 7.853196649 7.543484286 7.467500741 7.407078697 7.608261971 7.749083749 239614679 glnA Stress Nitrogen limitation Ajellomyces dermatitidis ER-3 7.16365173 7.476278311 7.648213019 7.345883227 7.908382796 7.081195999 7.223478151 7.447723184 212533279 ara_fungi Carbon cycling Carbon degradation Hemicellulose Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 8.372746143 8.568990304 8.454997825 8.329209523 8.048270989 7.459093457 7.682701102 7.843129318 8.053500462 90196511 chnB Organic Remediation Other Hydrocarbons Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.207399004 8.229363448 7.946058605 8.013837538 7.723407019 8.0302758 7.82119193 7.828268365 7.67454411 7.692260516 145574038 iro virulence Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 7.432166587 7.684325532 7.297962309 7.379243282 7.692677892 7.628499925 120403334 bphD Organic Remediation Aromatics Polycyclic aromatics Mycobacterium vanbaalenii PYR-1 7.88214444 7.895680097 7.839093243 8.223613149 8.158564055 8.028437256 7.90300934 8.128767932 77378719 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.730354567 8.033484298 8.032850096 8.31818428 8.252850171 8.036539093 8.191401754 8.067106032 39996198 pstB Stress Phosphate limitation Geobacter sulfurreducens PCA 7.892721562 8.165556761 7.095346912 6.835112161 7.203468936 6.962760145 6.538674352 7.613369908 7.055515444 7.134767173 6.894861836 221726822 NirB Nitrogen Assimilatory N reduction Agrobacterium radiobacter K84 8.089251622 8.069472698 7.570776476 7.548355756 7.542333052 7.653959893 7.535992319 7.879596847 7.815655849 7.808140508 7.712274708 81169999 ahpC Stress Oxygen stress Synechococcus elongatus PCC 7942 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus;species:Synechococcus elongatus; 8.17342267 8.082132564 8.1731915 8.17223823 8.535138989 8.310502439 8.343270039 8.344898156 8.488416762 8.701740405 8.426306474 157374666 cytochrome Energy process Energy process Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 7.449296709 7.520518152 7.440326367 7.237921961 7.381909505 213536675 exoglucanase Carbon cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 6.871035669 6.671885331 6.593167734 6.960918014 229917876 fnr Stress Oxygen stress Exiguobacterium sp. AT1b 8.025019607 8.256526228 6.900863035 7.427975673 148831125 pcc Carbon cycling Carbon fixation Erythrobacter sp. SD-21 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 7.171688227 7.080445183 12724358 ArsC Metal Resistance Arsenic Lactococcus lactis subsp. lactis Il1403 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Lactococcus;species:Lactococcus lactis; 8.135266142 8.429750589 7.813320797 7.933092226 7.729661756 7.151571206 7.678081119 7.706856536 7.845675019 7.635435413 7.836906324 90419776 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 8.515209673 8.17799039 8.316871238 8.247328475 7.96493451 8.061445166 8.581363685 7.973538562 8.281170429 8.21721909 7.960275301 89343901 glnA Stress Nitrogen limitation Rhodoferax ferrireducens T118 7.366949416 7.208223909 7.465454228 7.843139983 7.404848322 7.993597089 7.252388745 7.411556642 256583181 obgE Stress Radiation stress Cryptobacterium curtum DSM 15641 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Cryptobacterium;species:Cryptobacterium curtum; 7.707390621 7.622225786 8.011993894 7.892407669 8.181403941 8.326179363 8.307060973 8.158059208 114568825 sigma_24 Stress Sigma factors Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 7.326600206 7.059051862 113473705 catB Organic Remediation Aromatics BTEX and related aromatics Sphingomonas sp. KA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 7.063714381 7.452290932 7.559674879 7.467912219 6.817954262 7.733165382 7.160452461 7.195377256 58176536 phenol_oxidase Carbon cycling Carbon degradation Lignin Coriolopsis gallica superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Coriolopsis; 8.839437127 8.644520778 8.474637429 8.675992634 8.78509171 8.539678796 8.669533461 8.544595134 8.225233745 70998120 alkK Organic Remediation Others Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 6.90494197 6.951890722 114775368 hly virulence hemolysin Mariprofundus ferrooxydans PV-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Zetaproteobacteria;order:Mariprofundales;family:Mariprofundaceae;genus:Mariprofundus;species:Mariprofundus ferrooxydans; 7.234018535 7.441325525 7.233619908 7.118513083 7.255702422 7.774951647 7.234281511 6.855572592 7.39719012 219670900 tutFDG Organic Remediation Aromatics BTEX and related aromatics Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 7.639071442 7.839981766 8.006351214 7.755135081 8.10165503 7.663978059 8.261206723 8.446581552 8.083713848 21225803 oxyR Stress Oxygen stress Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.091170624 8.070762881 7.707250485 8.06414229 8.098201728 8.168567247 8.046805685 7.910195047 7.747452955 229469048 AceB Carbon cycling Carbon degradation others Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 7.276731974 7.646541291 157681778 sigma_70 Stress Sigma factors Bacillus pumilus SAFR-032 8.119220235 8.102470565 7.500286182 7.376551919 7.225566227 7.047568311 6.83825867 7.649586365 7.245843908 7.049566114 7.438003121 72396555 merP Metal Resistance Mercury Methanosarcina barkeri str. fusaro superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina barkeri; 7.547416488 7.186182102 7.308284864 121607490 pimF Organic Remediation Aromatics Aromatic carboxylic acid Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 8.121049363 8.070491898 8.172642407 8.229540985 8.091082142 8.068573346 8.557061911 8.133923438 8.575183684 8.258362571 8.308590968 15722310 merG Metal Resistance Mercury Plasmid pSB102 8.061942642 8.181423975 7.683033271 7.795398031 7.408484238 7.260181964 7.795410952 7.910377716 7.649577247 7.31851398 7.701663167 5851790 pheA Organic Remediation Aromatics Other aromatics Ralstonia sp. KN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 8.241185222 8.341775588 7.64364359 7.718447367 8.061260283 8.52840857 8.072788292 8.21834192 8.208824327 8.176198812 8.196326256 84778377 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.647429953 7.382716598 7.435625891 7.472782896 7.733097226 7.605641253 7.679201591 7.622877508 7.418865604 83955862 ZntA Metal Resistance Zinc Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 7.99085259 7.996581524 8.183997674 8.136675943 8.225519951 7.647393301 8.357078027 8.523683487 8.025320694 8.108226069 7.533863898 169827237 glnR Stress Nitrogen limitation Lysinibacillus sphaericus C3-41 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Lysinibacillus;species:Lysinibacillus sphaericus; 8.399474694 8.360417607 8.810081863 8.807966929 8.603707599 8.404846955 9.000659325 8.488793017 8.940972305 9.109044939 8.418362013 197748098 TehB Metal Resistance Tellurium Mannheimia haemolytica PHL213 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Mannheimia;species:Mannheimia haemolytica; 7.735296791 8.087356506 7.516115363 8.142920555 8.061979455 7.893397237 8.124765829 8.056865405 7.746756879 117929240 exochitinase Carbon cycling Carbon degradation Chitin Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 9.066975525 9.834484179 8.567566657 8.572196547 8.448411296 8.595652765 8.3525593 8.683002112 8.15955382 8.004532619 8.668937266 171852427 pstS Stress Phosphate limitation Corynebacterium urealyticum DSM 7109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium urealyticum; 7.50309651 7.438019636 7.695155273 7.572676306 7.717670884 83839988 sigma_32 Stress Sigma factors Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 7.414582297 7.612693317 7.748760267 7.146642026 7.194968607 7.485202052 98978668 MFS_antibiotic Antibiotic resistance transporter Sphingopyxis alaskensis RB2256 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 7.44271311 7.707818378 7.859392366 7.78883346 7.476484622 8.212366486 7.387663292 7.210607821 7.850526443 170721822 SmtA Metal Resistance Miscellaneous Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.695066765 7.682732082 7.377055268 7.810969782 7.52906818 8.088893615 7.607510162 7.471784253 7.50468539 227161586 ureC Nitrogen Ammonification Proteus mirabilis ATCC 29906 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 8.933514642 8.947968416 8.40100155 8.292495019 8.202723202 8.040160994 8.018565171 8.169715913 8.225240835 8.168268494 8.425262277 256686676 amyA Carbon cycling Carbon degradation Starch Jonesia denitrificans DSM 20603 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 8.463723807 8.763327988 8.10380693 7.946805651 7.938369083 7.547813654 7.598272845 7.74740449 7.748590992 7.75200257 8.074241692 68199022 CopA Metal Resistance Copper Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.090690715 7.94555813 7.916032942 8.060909415 8.222674824 8.22249301 7.805235459 8.035752971 133738502 cydB Stress Oxygen limitation Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 8.119632575 8.360871067 7.080814831 7.396169026 7.74098727 7.723188464 7.200655771 7.908601612 7.237546704 7.334198767 7.412994562 218763423 dmsA Organic Remediation Others Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 9.641558285 9.845747358 9.326235331 9.273098778 8.616466819 193212507 CopA Metal Resistance Copper Chlorobaculum parvum NCIB 8327 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum parvum; 8.763104889 8.918792352 8.601978869 8.505107397 8.704886577 9.270291648 8.410729332 9.284729738 8.649849166 8.663784557 8.820811947 14325459 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Thermoplasma volcanium GSS1 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermoplasmata;order:Thermoplasmatales;family:Thermoplasmataceae;genus:Thermoplasma;species:Thermoplasma volcanium; 7.399986667 7.692602443 7.624597196 7.357462719 7.216897585 7.405682214 7.842987941 218355104 pilin virulence pilin Escherichia fergusonii ATCC 35469 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia fergusonii; 7.931044372 8.044932432 7.131199026 7.373547238 7.491686206 6.974891931 7.43491083 68135461 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.909864519 7.917520919 7.299072511 7.132488535 7.228953034 7.07173287 6.886452573 7.680790465 7.222629495 7.057482707 7.369167379 84691790 ahpC Stress Oxygen stress Parvularcula bermudensis HTCC2503 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 8.256832884 8.175705851 8.226382476 8.390716527 8.338398298 8.289703756 8.358403665 8.163604813 8.229414125 182677852 iro virulence Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 7.373315819 7.752419089 223558031 ara Carbon cycling Carbon degradation Hemicellulose uncultured bacterium URE4 superkingdom:Bacteria; 8.355565402 8.078442229 7.751982317 7.884906603 8.220503687 8.25913442 7.885288387 8.226326717 7.582804755 7.863065253 7.841667256 240858725 amyA Carbon cycling Carbon degradation Starch Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.188909912 8.419970427 7.927572524 7.872770978 8.108275448 8.057687988 7.760162461 8.18551817 7.749495101 8.005834105 8.057098969 157704433 dfbA Organic Remediation Aromatics Polycyclic aromatics Sphingomonas sp. LB126 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.555384352 8.719390638 7.943511769 8.858510958 9.406563839 8.744046725 9.271372634 8.577672057 8.677913812 9.150315356 121604816 pimF Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 7.94342512 8.189435913 7.305079403 7.859996412 7.796716822 7.753349423 7.462767694 7.320839447 7.62442737 7.648217715 35213900 akbD Organic Remediation Aromatics BTEX and related aromatics Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 8.33989629 8.364542924 8.346058239 7.826476402 8.437757007 7.797622214 7.943209509 8.124641264 8.478278229 83747378 chnB Organic Remediation Other Hydrocarbons Ralstonia solanacearum UW551 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 8.782333495 8.809605739 9.484610521 9.079565633 9.067325644 9.534453373 8.881870478 9.202426118 9.108068072 8.776353145 183601548 pulA Carbon cycling Carbon degradation Starch Bifidobacterium animalis subsp. lactis HN019 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 7.290349087 7.099915722 7.586017579 7.496271148 7.489632786 7.942180458 7.617710839 7.589166396 7.433580509 227988105 hrcA Stress Heat shock Meiothermus silvanus DSM 9946 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 7.477237025 7.4148669 7.484511971 7.298255691 6.891198189 7.622247057 7.496998894 7.366583997 7.669702221 218707121 ArsA Metal Resistance Arsenic Escherichia coli UMN026 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 7.580226432 7.841529492 7.451682598 7.721819025 8.014097168 8.03694711 8.325650772 8.04769772 7.905076674 150031628 ahpC Stress Oxygen stress Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 8.012126448 8.059053303 7.652744204 7.450230613 7.273547309 6.859870289 7.225729298 7.737595601 7.259166585 7.344517868 7.709912579 223589356 pstS Stress Phosphate limitation Nautilia profundicola AmH superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Nautiliales;family:Nautiliaceae;genus:Nautilia;species:Nautilia profundicola; 8.051101737 8.124551424 8.473532446 8.008598713 8.568383267 7.790089202 8.502835689 8.886813606 8.230976109 227376005 SMR_antibiotics Antibiotic resistance transporter Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 8.255208588 8.270253096 7.72449817 8.475336917 8.168362382 7.884835724 8.441175325 8.100864076 8.419402149 8.244899577 7.916630595 150024821 TehB Metal Resistance Tellurium Flavobacterium psychrophilum JIP02/86 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium psychrophilum; 7.775937257 7.845781134 6.618902151 7.418057871 74317446 arsM Metal Resistance Arsenic Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 8.229794345 8.326459922 8.382920212 8.226082255 8.02013676 8.001832936 8.523782148 8.177548386 8.444763388 8.027829317 8.371462457 283835168 pilin virulence pilin Citrobacter youngae ATCC 29220 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter youngae; 8.259833862 8.460836708 7.296296463 7.310715096 7.658894585 7.766207492 7.154395117 8.288332632 7.597171496 7.444500246 7.132373486 77460913 cytochrome Energy process Energy process Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.959072388 7.935096806 7.134825407 7.56739251 7.228843063 6.837295278 118758109 vdh Carbon cycling Carbon degradation Others Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 7.487843493 7.685720634 7.905189534 7.957299364 7.863274082 8.04448761 7.942439289 7.854733309 8.224367563 118668454 CopA Metal Resistance Copper Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.4821298 7.569327396 7.656578665 7.568118845 7.836725398 7.817769199 7.856971972 7.716080339 8.003600327 214031882 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8.762214183 8.533998374 7.946873877 8.259033451 8.485535138 8.892315029 7.979929716 8.655297011 8.191896287 8.082648661 151561582 phn Organic Remediation Herbicides related compound Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 7.736575232 7.620996643 7.816957886 8.077982414 7.339141053 7.251537356 7.746679222 7.539077937 196232681 mer Metal Resistance Mercury Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 7.977774859 8.052024364 7.745015287 7.39180023 7.510043724 7.142678773 7.433891244 7.883508996 7.620387238 7.393647104 7.676619757 154250548 alkH Organic Remediation Other Hydrocarbons Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 8.33787411 8.174544974 7.80344105 8.033618878 8.245665789 7.83932294 8.192250976 8.041053855 8.053363406 8.29013281 7.5822641 121716300 BpH Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7.408878578 6.932369768 32473829 oxyR Stress Oxygen stress Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 7.203341635 7.619414975 218662203 CODH Carbon cycling Carbon fixation Rhizobium etli IE4771 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.348415313 7.687376338 7.268621361 7.784798912 7.050063584 7.123487253 7.538234212 16080515 nplT Carbon cycling Carbon degradation Starch Bacillus subtilis subsp. subtilis str. 168 7.464151556 7.209100149 7.229979624 6.938842806 6.879017004 7.503344448 7.032781388 7.232541007 7.409393911 187479879 gyrB other category gyrB Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 8.53189327 8.634614956 8.101284549 8.44860679 8.568862303 8.297076599 8.466090346 8.470354757 8.505794964 8.423117457 8.421809126 117999993 ophC Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.413385582 8.372226295 7.503978157 7.697968278 8.019491487 8.323191408 7.677532005 8.0438964 7.911170464 8.376638222 210627070 cellobiase Carbon cycling Carbon degradation Cellulose Collinsella intestinalis DSM 13280 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella intestinalis; 7.543451501 7.712789593 7.758148982 7.703299564 7.370768711 8.139332829 7.467533629 7.707711001 7.617563951 196177205 sigma_70 Stress Sigma factors Microcoleus chthonoplastes PCC 7420 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus chthonoplastes; 8.128761101 8.395433321 7.561236988 7.797063425 7.987852871 7.045796494 7.478722966 7.798907141 169624381 ara_fungi Carbon cycling Carbon degradation Hemicellulose Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 7.842664 8.052470864 7.996608383 7.645445699 7.28894829 7.767874841 7.449038444 7.738887772 7.684837448 7.054872143 7.365353518 94471241 narG Nitrogen Denitrification uncultured bacterium 8.225655948 8.059563475 8.104196112 7.650741029 7.868945904 7.877065594 7.836218928 7.843188264 7.803356257 14348602 fnr Stress Oxygen stress Paracoccus pantotrophus 7.426130915 7.073987005 7.755405147 7.787567962 7.409963826 7.575000836 7.61731634 220719293 CopA Metal Resistance Copper Variovorax paradoxus S110 8.237451806 8.404403068 8.252426013 8.170308887 7.935456617 7.930819947 8.003045932 8.148178381 7.992296772 7.822225461 7.871167213 32895210 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 6.917456649 6.709853831 7.597223758 189333556 pilin virulence pilin Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 7.654242773 7.858392466 7.618293892 7.167479927 7.957480652 8.039732338 7.83149512 7.549880741 194539380 CopA Metal Resistance Copper Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 6.916385996 6.956882027 120597722 ChrA Metal Resistance Chromium Shewanella sp. W3-18-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 8.031201124 8.482190591 7.698823011 7.734232682 7.657880159 7.463591793 7.719199129 7.564046745 7.752113744 88921761 ZntA Metal Resistance Zinc Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 9.001739762 8.633609497 7.979342894 8.063215251 8.38317365 8.705173442 8.580323487 8.474358163 8.272034951 8.255224173 8.607722368 121552963 nagG Organic Remediation Aromatics Aromatic carboxylic acid Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 7.849355151 8.135893411 8.281812445 7.156272126 8.648976619 7.640571627 7.824397464 7.813128849 76803674 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 7.954517195 8.164514683 8.043273504 7.329338273 8.202517552 7.693446475 8.096669227 8.011820245 8.242658635 109452527 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.147075163 8.298756472 7.634072523 7.832686237 7.184300162 7.478440204 7.556327069 114777120 ppx Phosphorus Phosphorus utilization Mariprofundus ferrooxydans PV-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Zetaproteobacteria;order:Mariprofundales;family:Mariprofundaceae;genus:Mariprofundus;species:Mariprofundus ferrooxydans; 7.800091128 8.162465212 7.7563916 7.887646333 8.185791961 8.020368753 8.179381235 8.020641394 8.0087933 126317554 nitA Organic Remediation Aromatics Other aromatics Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.485637945 8.365852045 8.357166121 7.59794166 8.469809323 7.7695371 8.303954341 8.423200577 8.249796208 154304901 tfdA Organic Remediation Aromatics Chlorinated aromatics Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 8.016059827 8.321766941 7.87436265 7.842408309 7.382104215 8.22915039 7.845040566 7.843469845 8.117783514 26986213 sox Sulphur Sulphur oxidation Thiomicrospira crunogena superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Thiomicrospira; 8.145400853 8.592515849 8.206671414 7.820312726 7.497472818 7.862811355 8.017275625 7.78799679 118059166 phn Organic Remediation Herbicides related compound Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 8.269773857 8.208509944 7.870305609 7.833067035 7.368757516 7.144340997 8.059177276 7.979127213 8.012251194 7.958424314 8.077697029 126730096 hrcA Stress Heat shock Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 7.288466007 7.428725432 7.862772141 7.657799888 7.272946326 8.069216281 7.188906812 7.281360319 114706902 AceA Carbon cycling Carbon degradation others Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 8.03832684 8.141537927 7.692074977 7.348920713 7.599489029 7.422014804 8.047444396 7.408856057 7.33272679 7.33957382 134080367 phenol_oxidase Carbon cycling Carbon degradation Lignin Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 7.706557765 7.823879503 7.968618009 7.205152739 7.794364309 7.894287971 7.829983169 7.865806141 73762778 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.577529433 7.235219405 7.450748143 7.190081879 7.690653912 8.017658728 7.58279566 7.076232868 7.48389351 154244926 sigma_24 Stress Sigma factors Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.180893695 8.121031025 8.0141197 8.352433165 7.743949884 7.496358885 8.299466895 8.162389574 7.978662983 7.747602047 8.07869662 117985797 pnbA Organic Remediation Aromatics Nitoaromatics Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.206217119 8.000040485 7.72035312 7.790101106 8.144155982 8.052908966 8.188787163 8.046458535 7.948730734 240171702 narH Stress Oxygen limitation Mycobacterium kansasii ATCC 12478 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 8.478235534 8.466477327 8.402899406 8.255161477 8.436071466 8.688350479 8.731355457 8.811919322 8.472420842 157914345 phoB Stress Phosphate limitation Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 7.814072017 7.60145318 7.444852487 7.211291371 7.517519712 7.758992322 7.39174703 7.200322161 7.524198959 40739021 nitA Organic Remediation Aromatics Other aromatics Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.929884824 7.957352847 7.958754026 7.924952096 8.030591427 8.093216392 8.462020278 8.265026703 8.216413828 116207366 katE Stress Oxygen stress Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 7.353722027 7.341467896 7.015767396 7.569284452 87281040 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.704150012 8.757292394 8.682977108 8.821283391 8.634838907 8.759978319 8.98376014 8.711754646 8.913537572 8.630205422 8.592172703 219676431 phoB Stress Phosphate limitation gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.874346712 7.738011019 7.897749783 8.012426872 7.532257577 7.876054395 7.29060636 7.698620389 76058170 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.327593694 8.099555093 8.211547544 161786227 ppx Phosphorus Phosphorus utilization Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 8.294761361 8.211594157 7.985054353 8.117560457 8.001456669 7.998136947 8.464633925 8.37699286 8.217098933 8.421349174 34732935 contractile_tail_sheath_protein Bacteria phage STRUCTURAL Aeromonas phage 44RR2.8t order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.419448255 7.952346827 7.973970013 7.418661124 7.581126112 7.722839997 218243828 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Thermus aquaticus Y51MC23 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus aquaticus; 8.392627613 8.527926154 8.337653929 8.185900943 8.604907058 8.35015567 8.610555975 7.953295299 118431398 narG Nitrogen Denitrification Aeropyrum pernix K1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Aeropyrum;species:Aeropyrum pernix; 8.032057572 8.206125794 7.19049964 7.070068251 7.143514118 7.223674073 6.828708249 7.766657834 7.031089816 7.284348583 163783146 gyrB other category gyrB Hydrogenivirga sp. 128-5-R1-1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenivirga; 7.28977369 7.321800946 7.080580125 7.154726396 7.212644716 34557335 pstA Stress Phosphate limitation Wolinella succinogenes DSM 1740 7.818764131 8.121852111 7.052924848 6.912269884 6.785595927 7.565953249 6.923100595 7.178333451 118002923 CadA Metal Resistance Cadmium Comamonas testosteroni KF-1 7.163266842 7.47466688 7.330572085 7.294919292 7.296974551 7.100618465 121589561 nrfA Nitrogen Dissimilatory N reduction Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 7.951841185 7.773295462 7.418922847 7.86423639 7.821522001 7.612050772 7.775440197 7.37562788 89512980 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.610611356 7.677033772 7.576639353 7.442922224 7.415784787 7.795252958 7.449368568 7.512941713 7.712411583 55056847 adpB Organic Remediation Pesticides related compound Pseudomonas pseudoalcaligenes superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.454670686 7.235865725 7.680200503 7.409798905 7.491731697 7.403064498 7.591769197 7.548283542 51244645 sigma_70 Stress Sigma factors Desulfotalea psychrophila LSv54 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfotalea;species:Desulfotalea psychrophila; 7.654762752 7.891171921 8.051777769 7.36638193 7.814189964 7.389401872 7.656405306 87281775 ahpC Stress Oxygen stress Synechococcus sp. WH 5701 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.970705654 7.987091776 7.790032341 7.297986779 7.928682056 7.980122857 7.506995189 7.638124375 7.624104251 76883674 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nitrosococcus oceani ATCC 19707 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 7.239236788 7.170054172 7.203698596 7.121711754 7.010476726 7.72369537 7.348392456 7.016376437 7.359808834 257386427 pstC Stress Phosphate limitation Halomicrobium mukohataei DSM 12286 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halomicrobium;species:Halomicrobium mukohataei; 8.165200333 8.010807068 7.67906356 7.733782453 8.079617452 7.770972016 7.857784445 8.282201403 85773455 silC Metal Resistance Silver Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 8.46472477 8.695258449 8.170074432 7.771071676 7.906903722 8.188375668 7.716151393 8.653532043 8.138720108 8.213152752 8.044900366 212636108 pstB Stress Phosphate limitation Shewanella piezotolerans WP3 7.408472961 7.384336272 7.312822187 7.005037966 7.851200151 7.152171165 7.576741801 27354681 ALN Organic Remediation Others Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.664533819 7.090382798 7.929933695 8.096093356 7.327755695 8.186101083 7.319987731 7.263022471 2765118 mer Metal Resistance Mercury Thiobacillus sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 7.579271643 7.649301686 8.299121154 8.297450166 7.858412155 8.152987466 7.693954271 7.918105568 7.904338466 88920179 rubisco Carbon cycling Carbon fixation Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 7.489050706 7.906673288 7.863423805 7.756218091 7.449254405 7.837084863 7.572993893 7.445326668 74038388 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.109353874 7.775706321 7.570464021 7.195102821 7.601973147 7.656839677 7.149414708 7.857685437 7.502108165 7.536916876 7.494723953 39973413 ara_fungi Carbon cycling Carbon degradation Hemicellulose Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 8.088432444 8.112758523 7.727075307 7.543019799 7.579958247 7.963150203 7.422222206 8.000800177 7.343711461 7.209851366 7.431269387 121709469 tfdA Organic Remediation Aromatics Chlorinated aromatics Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 8.099338131 8.031671313 8.216998848 8.108841125 8.806740228 8.429335781 8.81106832 8.85566615 8.5467284 56963455 sigma_70 Stress Sigma factors Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 7.274561904 7.147294905 7.167433262 7.594796431 184197349 nagG Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.21327626 8.390510889 8.093329473 8.025584413 7.574421731 7.819402975 7.976455375 8.163334809 7.986285468 7.947367512 7.815530395 110632523 glnA Stress Nitrogen limitation Mesorhizobium sp. BNC1 8.026487469 8.392757079 8.329432753 8.570826206 8.064329795 8.227224229 7.944012967 8.175077809 7.974625713 126737671 oxyR Stress Oxygen stress Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.601829111 8.925754769 8.380468847 8.167883477 8.246193666 7.856821373 8.136952901 8.248550037 8.370390977 8.715801458 169811116 nbaC Organic Remediation Aromatics Nitoaromatics Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 8.002767392 8.257371667 7.444133854 7.818656605 7.573544478 7.686822388 7.831660554 7.793704477 8.003837337 192292749 fnr Stress Oxygen stress Rhodopseudomonas palustris TIE-1 8.202219264 7.916700244 7.626590858 7.65066372 7.624725854 7.70181544 7.361437265 7.311322292 94969356 pulA Carbon cycling Carbon degradation Starch Acidobacteria bacterium Ellin345 7.701926071 7.954434283 8.257770502 7.5662704 7.501213781 7.547889976 7.501267239 7.914003917 28809091 TerC Metal Resistance Tellurium Vibrio parahaemolyticus RIMD 2210633 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.649837753 7.329674394 7.288775446 7.130236485 7.423110529 113529047 xylJ Organic Remediation Aromatics BTEX and related aromatics Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.194740398 8.070336222 7.662889851 8.071742104 8.005948696 7.984722705 8.111876396 7.988137435 7.673639662 111147886 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 7.624869713 7.6858003 7.899127671 7.91620302 8.12464967 8.03022844 8.25142625 7.995231976 7.954039134 217330295 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.843245739 7.943693774 7.927496343 7.252579445 8.08272688 7.701148372 7.929862802 7.789308984 7.936912576 168333758 glnA Stress Nitrogen limitation Epulopiscium sp. 'N.t. morphotype B' 7.485991358 6.865912957 7.190644309 150036144 sox Sulphur Sulphur oxidation sulfur-oxidizing bacterium str. manganese crust superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.790904771 7.772642271 8.019481573 7.634917394 7.491578697 8.186881971 7.537944135 7.844067669 7.608043178 259036566 sigma_70 Stress Sigma factors Granulicatella adiacens ATCC 49175 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Carnobacteriaceae;genus:Granulicatella;species:Granulicatella adiacens; 6.900936412 6.69621036 7.43832034 6.942851719 7.300969647 259166145 narJ Stress Oxygen limitation Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 8.086750466 8.508097021 8.098455921 7.93805664 7.553429339 7.708450417 8.044213826 7.922810755 7.996436782 7.57731511 8.001294395 220712112 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.36192115 8.420996021 8.146461108 8.35803961 8.345322476 8.387557479 8.188821608 8.076194405 74316582 sox Sulphur Sulphur oxidation Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 9.096692861 8.331985126 8.826868641 8.706213395 8.787563994 8.334049274 8.052242685 158341079 sigma_70 Stress Sigma factors Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;genus:Acaryochloris;species:Acaryochloris marina; 7.682503474 7.86343137 7.323809898 7.289553463 7.062206835 6.832771733 6.939269401 7.466053988 6.981701169 7.187792987 199597091 hrcA Stress Heat shock Lactobacillus rhamnosus HN001 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 7.7944391 8.09555265 7.365382865 7.42012194 7.382400995 7.167876864 7.393287732 8.040824773 7.660990751 7.338630668 7.346146988 110822315 alkK Organic Remediation Others Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.198852308 8.361815823 8.018921546 8.00907885 7.629697659 8.047144351 7.974077784 8.152119165 7.984505024 7.68847223 88815909 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid marine actinobacterium PHSC20C1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 7.095065417 7.806160786 8.005464118 7.257444272 8.103343809 7.467941934 7.367462637 7.528319424 91788120 ppx Phosphorus Phosphorus utilization Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 7.813003865 7.819627953 7.696227435 7.153732926 7.744804645 7.658879235 7.605219999 7.289153558 239814402 sigma_24 Stress Sigma factors Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 8.790257899 8.618173833 8.275292291 8.654293134 8.787598714 8.85227508 8.687198066 8.832369516 8.171537105 8.269248655 8.465790888 32261705 napA Nitrogen Dissimilatory N reduction Helicobacter hepaticus ATCC 51449 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter hepaticus; 6.900263329 7.64606896 84181179 pstB Stress Phosphate limitation Serratia marcescens 8.273341306 8.313771337 7.74992569 7.893256223 8.184583289 8.172659933 7.603410511 7.960800359 8.439146054 7.938166878 261249749 mcrA Carbon cycling Methane Methane production uncultured archaeon superkingdom:Archaea; 7.345819132 7.684613604 7.487135391 7.584013938 255060288 cytochrome Energy process Energy process Geobacter sp. M18 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.427800372 8.506985032 8.026108172 8.019210924 8.019247346 8.102086883 8.169023003 8.138185875 8.048507226 8.045092943 8.365679001 157371775 pstC Stress Phosphate limitation Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 8.965314718 8.909239874 8.459392645 8.532836767 8.527589605 8.544071138 8.729394116 8.687048866 8.889346022 8.672644251 218250445 nplT Carbon cycling Carbon degradation Starch Mitsuokella multacida DSM 20544 8.119109589 8.012736528 7.59652376 7.559110523 7.583353374 7.409580226 7.535867469 7.870784251 7.752653036 7.531350134 7.650567123 179343806 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 7.935451182 7.848198416 7.743194811 7.826553304 7.962527098 7.600705084 7.846076705 7.385503613 150955273 cbdA Organic Remediation Aromatics Chlorinated aromatics Klebsiella pneumoniae subsp. pneumoniae MGH 78578 8.201621321 8.293250472 7.766870393 7.804810697 7.627266473 7.842415572 7.7017938 8.045141847 7.941412793 7.866526997 7.788980652 146300098 TerC Metal Resistance Tellurium Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 7.72691358 7.957842295 7.561482623 7.443207136 7.557901883 7.717388401 7.583862721 6.866832912 7.416103407 260573891 fnr Stress Oxygen stress Lactobacillus crispatus MV-3A-US 7.833904693 8.156404195 7.275197459 7.03292313 6.654731165 7.377154564 7.05314877 6.915119626 7.394779161 1526617 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida 7.557405399 7.59410021 7.984945893 7.906104703 7.469829084 8.046623639 7.549672307 7.830752693 7.755209623 27376012 amyA Carbon cycling Carbon degradation Starch Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.532717842 8.074913154 8.056726817 7.832297121 8.59814257 7.962800241 7.966933304 7.979065448 8.271008416 56420061 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus kaustophilus; 7.373522133 7.288209288 7.656945854 7.572680962 7.535131026 8.009004152 7.307923389 7.152023019 7.393762066 146322789 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 8.011975313 8.559530466 8.034749257 7.4956297 7.458370513 7.363719915 7.980617081 7.9880115 7.571873966 7.617888072 7.477053955 56809509 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.964394674 8.112906835 7.237511084 7.044195762 7.246488836 6.658421287 7.379494329 7.064315502 6.833383667 7.278925484 159893465 ChrA Metal Resistance Chromium Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 7.832029598 8.374065115 8.016003537 8.167153898 8.103404835 7.965021782 8.316390959 8.011339795 8.306257996 7.775028953 7.648848474 25026984 ppx Phosphorus Phosphorus utilization Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 7.373835676 7.329840538 7.345154619 6.995971241 7.948957112 7.284984584 7.544185343 34102640 pimF Organic Remediation Aromatics Aromatic carboxylic acid Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 8.051614443 8.093759761 8.184733477 7.946817567 8.134722442 8.394784189 8.452589943 8.107384951 7.949278921 121603516 pimF Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 7.560578794 7.504483918 7.58991713 6.971355911 7.766170384 153005618 cytochrome Energy process Energy process Anaeromyxobacter sp. Fw109-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 8.056318213 7.587964666 254523109 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Stenotrophomonas sp. SKA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 7.789475612 7.58879053 7.967089186 7.641249604 7.264217504 8.208811343 7.529492748 7.827196435 7.447915215 221315949 ureC Nitrogen Ammonification Bacillus subtilis subsp. subtilis str. NCIB 3610 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 8.171610608 8.386137908 7.786289831 7.746252054 7.755100709 7.385212701 7.476575987 7.438821308 7.329820095 7.841972137 119391475 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.762134867 8.532650883 7.902459407 7.967686772 8.221941613 8.407857585 8.054149346 8.070513013 7.845390501 8.097445914 7.754957333 29243565 DNA_ligase Bacteria phage REPLICATION Pseudomonas phage gh-1 order:Caudovirales;family:Podoviridae;genus:T7-like viruses; 8.19102804 8.047653869 7.43630018 7.503497821 7.862072981 7.64881645 7.388193721 221234655 sigma_24 Stress Sigma factors Caulobacter crescentus NA1000 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 7.32452553 7.770724191 7.898743412 7.700963193 7.695846828 7.867888184 7.90188669 139003462 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.710618596 7.339977629 7.324299133 7.33269528 7.215862518 7.325378745 116488843 gyrB other category gyrB Ruegeria atlantica 8.313812971 8.270939284 7.972831028 7.815352385 7.990794878 8.071914095 7.771622119 8.48994982 7.712384761 7.644399939 7.912986445 229760961 cellobiase Carbon cycling Carbon degradation Cellulose Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 8.00498514 7.867650214 7.536491683 7.361017416 8.070682255 7.696742212 7.819110114 7.898518505 7.963393737 86144287 pimF Organic Remediation Aromatics Aromatic carboxylic acid Vibrio sp. MED222 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.454243176 7.469588886 7.682645428 7.575056177 7.26283826 7.922991201 6.948253896 7.439374132 7.664632249 10172866 ureC Nitrogen Ammonification Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 8.485352516 8.288014892 7.786726253 7.585610059 7.818222945 7.479269866 7.412825917 8.067407884 7.557859162 7.789355062 7.92141032 189496207 APS_AprB Sulphur adenylylsulfate reductase Chlorobium phaeobacteroides BS1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 8.2863964 8.349561004 7.841597905 7.65565839 8.431395169 8.663181194 7.868186592 7.944241185 8.267641985 8.362194197 34495548 alkK Organic Remediation Others Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 8.494289599 8.163314666 8.379213347 8.781388474 8.888064038 9.172853815 8.998419014 8.901204177 9.272095921 9.325602036 9.096156402 197286521 type_III_secretion virulence secretion Proteus mirabilis HI4320 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 7.815334847 7.925855881 60326776 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.405119421 7.087562314 7.308736349 7.202862482 6.976131473 7.417805793 89344547 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 7.690063042 7.552337836 7.891418131 8.123770702 7.757434157 7.963081448 7.945301351 7.920207812 86574365 fnr Stress Oxygen stress Rhodopseudomonas palustris HaA2 8.113935217 7.881601322 7.634064822 7.947384327 8.030736951 7.899366738 7.609268258 7.802258909 7.822393392 8.241423623 120403269 glnA Stress Nitrogen limitation Mycobacterium vanbaalenii PYR-1 7.615897304 7.745812659 7.74285266 7.578977751 8.005079289 7.865646628 8.130580709 8.079406285 7.896708672 77378497 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.558935332 7.378285024 20520951 narI Stress Oxygen limitation Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.461429612 8.486359546 7.976810847 8.209000562 8.514854609 8.276551163 8.314282154 8.285455841 8.207886494 8.516556748 8.411779249 150961636 katE Stress Oxygen stress Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 7.672701788 7.679674113 7.29165213 7.840668963 7.752395877 7.937673562 7.837941617 7.853666273 223414528 mer Metal Resistance Mercury bacterium enrichment culture clone 35Bj3P3 7.289757157 7.345382796 7.600424176 7.168252762 7.602228127 6.931664184 7.191195839 114338811 ctsR Stress Protein stress Syntrophomonas wolfei subsp. wolfei str. Goettingen superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Syntrophomonadaceae;genus:Syntrophomonas;species:Syntrophomonas wolfei; 7.908196079 7.867202072 7.629804792 8.020383914 8.12273157 7.841281516 7.793831258 7.375349788 7.696642608 117675825 gyrB other category gyrB Agrococcus jenensis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Agrococcus; 8.034053121 8.225074922 7.520286977 7.44339892 7.744186318 7.525871532 6.951117159 7.744199987 25045818 cpnB Organic Remediation Other Hydrocarbons Rhodococcus sp. T4A9 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7.193093085 7.335810447 7.425483553 6.649133284 7.299165393 7.2745601 7.631774925 198262346 pimF Organic Remediation Aromatics Aromatic carboxylic acid gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.245876807 8.429314088 8.199764148 8.388387457 8.926313203 8.435905338 8.335146505 8.007035686 8.666756562 116225907 ara Carbon cycling Carbon degradation Hemicellulose Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 8.425259916 8.39901295 8.245917115 8.185050321 8.690917145 8.358171082 8.430941758 8.323239953 8.456659285 219995997 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 7.568437496 7.687846739 7.761554079 7.066743306 7.125047479 7.452437393 119371712 narG Nitrogen Denitrification Propionibacterium acidipropionici superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium; 7.52291811 7.669257492 8.193591001 7.781890928 7.933258211 8.262103483 7.75495372 8.058982405 7.756208347 70992389 endoglucanase Carbon cycling Carbon degradation Cellulose Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 7.520030692 7.529934792 7.236482186 6.933857976 7.426817818 7.631610164 7.609703305 7.162392376 7.458815899 77815743 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Shewanella putrefaciens CN-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella putrefaciens; 7.69174345 7.727123554 8.292164764 7.993125567 7.714643984 7.75142901 7.926701331 8.08990889 77698548 CODH Carbon cycling Carbon fixation Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.799251999 8.51156243 8.253545667 9.030091552 8.405695363 8.486786574 8.433026487 8.384416675 8.957479413 8.324906143 116224817 sigma_24 Stress Sigma factors Candidatus Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 8.094467274 8.035639956 7.793009739 7.722251055 7.755096115 7.850984903 8.025406438 7.747597243 7.992985369 84690227 ppx Phosphorus Phosphorus utilization Parvularcula bermudensis HTCC2503 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 8.160495757 8.048349183 7.808827653 7.402920685 8.249803974 7.954489228 8.000335978 7.911292835 7.883957077 116201827 nagG Organic Remediation Aromatics Aromatic carboxylic acid Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 8.168311853 8.482976241 7.86570175 7.652326782 7.802878103 7.271512911 7.470330236 7.984774238 7.694100804 7.398774116 7.728369426 195939055 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 7.930570752 8.465859924 7.804468782 7.311554918 7.558127411 7.39617765 7.836253691 7.672036888 7.496233228 7.880344831 110667205 ArsA Metal Resistance Arsenic Haloquadratum walsbyi DSM 16790 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloquadratum;species:Haloquadratum walsbyi; 7.857626046 7.902273661 7.730069989 7.422941895 7.38632694 7.425752601 7.431784279 7.842787233 7.542081589 6.918306506 7.385317273 156973444 dnaK Stress Heat shock Vibrio harveyi ATCC BAA-1116 7.572312572 7.260136102 7.171174944 7.100772321 6.837704947 7.579206316 6.972454941 6.950897823 6.872040305 108804538 pcc Carbon cycling Carbon fixation Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 7.945340101 7.824746119 7.865848618 7.834770128 8.165596754 7.630998696 7.90938624 71737422 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 8.252331488 7.834251892 7.971330372 7.453348176 7.891734582 8.062573947 7.901509143 8.366738375 160362383 vanA Carbon cycling Carbon degradation Others Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.29126119 8.277638928 8.228140151 8.294632742 8.076733993 7.929823866 8.773073326 8.443499582 8.390346612 8.394743954 225348657 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.261037871 7.343009282 7.387357155 7.232317715 7.495689413 7.133829185 7.38788023 218758477 type_III_secretion virulence secretion Desulfovibrio vulgaris str. 'Miyazaki F' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 8.052477695 7.806042941 7.724667474 7.424568353 7.916228466 7.885471998 7.950852042 7.785507148 7.936475007 83773454 nitA Organic Remediation Aromatics Other aromatics Aspergillus oryzae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 8.184377489 8.309292566 7.672728681 7.447099403 7.321320387 7.402689847 7.960612381 7.369018489 7.803183041 90206044 tftH Organic Remediation Aromatics Chlorinated aromatics Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 7.461929428 7.229719551 7.221835706 7.866011446 7.542826093 7.428675264 7.782878744 7.540935411 30230513 mcrA Carbon cycling Methane Methane production Methanosarcina lacustris superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina; 7.63004328 7.498314987 7.352089618 7.334343557 7.885138187 7.285368491 7.274297924 7.373158531 221737130 sigma_32 Stress Sigma factors Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 8.246681839 8.313022899 7.848768484 7.88877109 8.260527014 8.659431349 8.227071285 8.44022945 8.049989167 8.19797626 8.034267799 163740899 ppx Phosphorus Phosphorus utilization Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 8.75403681 8.783231739 8.189087459 8.169108257 8.004669789 8.169197405 7.929123768 8.206458232 7.875543793 8.184606862 8.131929808 118169099 nhh Organic Remediation Aromatics Nitoaromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.392757248 8.377252484 8.226063026 8.085021908 8.760636817 7.823817127 8.482002707 8.396263247 8.344535327 93358983 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.095348517 8.547814451 7.466050944 7.591639907 7.588325907 7.703197666 7.064876521 7.819793321 7.78883312 7.477521733 7.840006217 163261793 pcpE Organic Remediation Herbicides related compound Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 7.65619285 7.862516039 7.561560566 7.241397575 7.832527649 7.677017824 7.521786067 8.129021774 156192806 atzA Organic Remediation Herbicides related compound Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 7.184711628 6.898430468 7.447532467 7.186944654 7.064179882 7.69716854 6.950482127 7.496875586 114704394 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 8.168876738 8.308815098 8.572618794 8.138752403 7.693201368 8.254950193 8.422998092 8.249926213 8.191714828 8.288634887 8.007397528 117984481 benAB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 9.147060737 9.097774813 9.469282819 9.738296022 9.093885746 9.756690129 9.598923982 9.455618721 197626580 sigma_70 Stress Sigma factors Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 7.917548934 8.151445508 7.869260649 7.740538955 7.673174191 7.638048275 8.239057511 7.862728394 8.028491663 8.071778759 7.945644674 118131883 RNA_dependent__RNA_polymerase Bacteria phage REPLICATION Enterobacteria phage FI family:Leviviridae;genus:Allolevivirus;species:Enterobacteria phage FI sensu lato; 7.107330681 7.40622932 7.248779254 7.387567411 7.452330653 7.295975114 261857017 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.721387857 7.520622618 7.653802104 7.120654002 7.524262694 7.814137501 7.428491211 7.424274422 7.546308388 158335840 ahpC Stress Oxygen stress Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;genus:Acaryochloris;species:Acaryochloris marina; 7.447575919 7.242274971 7.404833231 7.314354689 7.238889703 215429832 pcc Carbon cycling Carbon fixation Mycobacterium tuberculosis EAS054 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 8.258048353 7.912015102 8.321385074 8.888495292 8.302992435 8.178084146 8.553928429 94502741 major_capsid_protein Bacteria phage STRUCTURAL Enterobacteria phage MV BS order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 8.164761941 8.264629908 7.595866672 7.673703495 7.728647529 8.097111039 8.288292775 7.853071439 8.359096078 8.325606454 8.373865263 78060207 sigma_70 Stress Sigma factors Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.198192548 8.45078444 7.923528438 7.688955449 7.688040297 7.878602525 7.918694644 7.75759003 7.890513615 7.493746939 7.728393577 254501954 NirB Nitrogen Assimilatory N reduction Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 8.392319656 8.2997823 7.557345509 7.520581524 7.702898542 7.520048066 7.540103352 7.928150094 7.784965251 7.326560975 7.737977826 118666180 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.524659442 7.158170825 7.561433629 7.277127492 7.065841341 7.749922971 7.340819432 7.432558359 109452455 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.479513251 7.534205976 7.671898312 7.647707893 7.478168991 7.766368443 7.213050712 7.666704183 7.373429763 86282067 catB Organic Remediation Aromatics BTEX and related aromatics Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.748576641 7.114983678 7.450726251 7.657667646 7.639878324 7.374101101 7.252388745 7.031820008 148253679 pmdAB Organic Remediation Aromatics Others Bradyrhizobium sp. BTAi1 8.016114662 7.578260356 7.231589374 7.812640916 7.72441065 7.977014934 8.02922168 8.077059165 7.663443355 78192808 narI Stress Oxygen limitation Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 7.988287399 8.012012211 7.951117145 7.802210825 7.691833561 7.734545197 7.773859685 7.76264335 7.867020276 7.609724352 7.62392307 396083 nplT Carbon cycling Carbon degradation Starch Bacillus acidopullulyticus 7.572798643 7.615496218 7.621142465 7.519102758 6.749096865 7.781534809 7.577888318 7.247402224 7.862498844 62912500 AceB Carbon cycling Carbon degradation others Streptomyces cinnamonensis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.117951972 8.431055208 8.517367669 8.31072074 7.91063439 7.811489348 8.176127774 8.186136258 7.70739097 7.601339867 117929001 ArsC Metal Resistance Arsenic Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 8.042200586 7.970084326 8.523694942 7.217435176 7.654738744 7.795803442 8.031222413 189193029 AceA Carbon cycling Carbon degradation others Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 8.19726255 8.646877698 7.693635791 7.615735365 7.762240649 7.448435425 7.614750073 261378292 iro virulence Neisseria cinerea ATCC 14685 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria cinerea; 7.676491844 8.094357237 7.346295218 7.297762184 7.587233046 7.598774605 7.306756415 7.680161962 7.215322028 7.447734543 7.512780425 84694060 Apc Organic Remediation Aromatics BTEX and related aromatics Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8.254145643 8.304885387 8.113171447 8.084609416 8.014629822 7.810431642 8.284298481 8.401286487 8.295969419 7.870512965 8.095837144 145230535 exoglucanase Carbon cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.581575533 7.984677719 7.852951138 7.672274518 8.135519263 8.140949283 8.181930125 8.04704271 8.12044981 196114348 sigma_24 Stress Sigma factors Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 8.691442706 8.954190565 8.220001351 8.322446232 8.040565621 7.892104003 7.912011045 8.325209141 8.236443422 8.128955731 21238931 gyrB other category gyrB Skermania piniformis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Skermania; 7.813547575 8.115363357 7.033954105 7.439511345 7.265645652 7.861695786 82703394 CopA Metal Resistance Copper Nitrosospira multiformis ATCC 25196 8.158552897 8.276443241 7.66131102 7.843173184 7.607264952 7.68287605 7.628449213 7.774904323 7.324612126 8.030707316 91710145 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Methylobacillus flagellatus KT superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 8.095533001 8.088965799 8.218130301 8.423661208 8.180003297 8.140995863 8.223593046 8.572784843 8.34918414 228750030 Tet Antibiotic resistance other Bacillus mycoides DSM 2048 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus mycoides; 7.580104444 7.841023496 7.078596407 6.699243511 7.300280721 6.522532666 7.3289157 6.696681031 7.222202478 27356087 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.986324676 8.022524877 7.535846448 7.582428046 7.369725231 7.313677078 7.411617719 7.843972332 7.60477826 7.379155583 7.50253884 125499014 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Streptococcus sanguinis SK36 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus sanguinis; 8.166596024 8.246941386 7.965463531 7.748957108 7.484913268 7.168920666 7.028020695 7.79645491 7.522249484 7.495248327 260428071 SMR_antibiotics Antibiotic resistance transporter Citreicella sp. SE45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 7.33781129 7.792305686 7.673928746 7.542116919 7.480651559 7.526448999 7.642958096 7.76483727 78170212 gyrB other category gyrB Chlorobium chlorochromatii CaD3 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium chlorochromatii; 7.461411848 7.129200572 7.779262728 7.113636992 7.135891255 8.031570272 7.330785035 7.327645078 110630842 nifH Nitrogen Nitrogen fixation uncultured soil bacterium superkingdom:Bacteria; 7.119766304 7.261980073 7.082917449 6.838827303 6.578078253 7.513843387 6.991368469 7.099514773 7.071675068 62003547 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.270500062 7.483931256 7.973898492 7.590560361 7.800084246 7.579867544 7.397022556 196184485 AceB Carbon cycling Carbon degradation others Brevundimonas sp. BAL3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas; 8.213688194 8.190019613 7.785001878 7.698077521 7.744832843 7.573256722 8.012641689 8.211439385 8.149540601 7.749291683 8.124190772 118172221 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.453447134 8.432923893 8.50971492 7.92858497 8.736596894 7.98197156 8.424421538 8.580731013 8.274838542 10640161 ferredoxin_II Bioleaching Electron transport Thermoplasma acidophilum;Thermoplasma acidophilum DSM 1728 7.668589655 7.551616829 7.385295609 7.143014301 7.738813822 7.739556089 7.46054558 7.578061115 241366935 obgE Stress Radiation stress Acidovorax delafieldii 2AN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax delafieldii; 8.083148618 8.066732372 7.616507986 8.085814923 8.086801157 8.183350291 7.946815749 8.01333882 7.747128412 15835080 gyrB other category gyrB Chlamydia muridarum Nigg superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Chlamydiaceae;genus:Chlamydia;species:Chlamydia muridarum; 8.019877848 8.045990214 7.48000532 7.283974172 7.336951365 7.036416262 7.273855029 2786 glucoamylase Carbon cycling Carbon degradation Starch Amorphotheca resinae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;family:Myxotrichaceae;genus:Amorphotheca; 8.387115864 8.412331576 7.394005704 7.688590424 8.020041265 7.690666413 7.318456888 8.150325494 7.617611821 8.044925011 272529148 obgE Stress Radiation stress Burkholderia sp. CCGE1002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.260061084 8.539547719 7.911505459 7.796707412 7.66579168 7.809827254 8.128900829 7.940415385 8.029326475 7.781611866 7.932944781 113473905 phtB Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas sp. KA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 7.256339943 7.467218158 7.418441827 7.134374446 7.657327213 7.121936301 6.899452787 256587094 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Saccharomonospora viridis DSM 43017 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora viridis; 8.177198359 8.300694381 8.012761304 8.067772532 7.858664822 7.940100054 8.331597776 8.501898312 8.377446479 8.201274844 8.643900521 262275974 pstB Stress Phosphate limitation Grimontia hollisae CIP 101886 8.574368674 8.755369932 8.186610811 8.030611453 8.175989728 7.323396457 7.002898224 7.94965202 7.800425826 7.539904523 8.153325646 88798352 CopA Metal Resistance Copper Reinekea sp. MED297 7.066672467 7.520186117 7.16828699 6.821307905 6.926147495 7.42461 7.241441552 7.008117881 227090639 pstB Stress Phosphate limitation Corynebacterium glucuronolyticum ATCC 51867 8.116046531 8.220767969 7.579420734 7.322989262 7.315433082 7.503814622 125861423 cap virulence capsule Methanoculleus marisnigri JR1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanoculleus;species:Methanoculleus marisnigri; 7.623168462 7.664051344 7.537824966 7.397169043 7.241871374 7.543104541 7.224086525 7.535663293 229745363 srt virulence surface protein Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 8.137657336 7.534488901 213960533 pstB Stress Phosphate limitation Propionibacterium acnes SK137 8.351068134 8.156924702 7.553910018 7.888438628 8.098420787 8.332541659 7.509516114 8.336742424 7.742709803 8.000177705 7.978872043 221075249 ppk Phosphorus Phosphorus utilization Blautia hansenii DSM 20583 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Blautia;species:Blautia hansenii; 6.79295633 6.720526638 6.863561175 209401590 narG Nitrogen Denitrification uncultured bacterium 8.104077604 8.245426945 7.661747629 7.850228647 7.425856498 7.562677689 7.774792432 8.073306321 7.65481465 7.753691725 159035868 narI Stress Oxygen limitation Salinispora arenicola CNS-205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 8.113185119 8.158936006 8.281827651 8.050718617 8.14392841 8.109715498 7.714610665 62289913 ArsC Metal Resistance Arsenic Brucella abortus biovar 1 str. 9-941 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Brucella;species:Brucella abortus; 7.627346545 7.730162466 7.570414002 7.69765489 7.898643143 7.77877632 7.677362018 7.865294093 209536710 TerD Metal Resistance Tellurium Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.624453436 7.478375362 7.990449877 8.028749607 8.343947355 8.49583724 8.144513094 8.072309932 124485381 CadA Metal Resistance Cadmium Methanocorpusculum labreanum Z superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanocorpusculaceae;genus:Methanocorpusculum;species:Methanocorpusculum labreanum; 8.263105923 8.304211936 7.699321747 7.713555386 7.504120598 7.961536439 7.848802564 7.515900697 7.798035056 7.767281316 188480969 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.394708603 7.375966859 7.2288708 7.065220809 7.118385797 8.194064955 7.283905482 7.136397341 7.375474064 206895618 atzA Organic Remediation Herbicides related compound Coprothermobacter proteolyticus DSM 5265 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermodesulfobiaceae;genus:Coprothermobacter;species:Coprothermobacter proteolyticus; 7.930935067 7.954543508 7.617653543 7.308559877 7.477009035 6.859576599 7.003602189 7.401679693 7.341760311 7.509426608 7.497351452 94309906 ureC Nitrogen Ammonification Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 7.79654903 7.694184002 74318062 CopA Metal Resistance Copper Thiobacillus denitrificans ATCC 25259 7.905364909 8.376679362 7.444558217 7.446353826 7.510846337 7.537732815 7.421066368 7.64319062 7.579344199 7.644333356 7.609480492 255047443 sigma_32 Stress Sigma factors Neisseria sicca ATCC 29256 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria sicca; 7.703955108 7.493446716 7.586483035 7.803291332 7.413962126 8.006047741 7.519286978 7.496866182 7.812485771 145213638 nahA Organic Remediation Aromatics Polycyclic aromatics Mycobacterium gilvum PYR-GCK 7.842776704 8.039493857 7.03893258 7.30312188 7.33864004 7.021276071 7.110670631 189024047 phn Organic Remediation Herbicides related compound Brucella abortus S19 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Brucella;species:Brucella abortus; 8.128860736 8.212042015 7.700189773 7.578844781 7.664809084 7.417617743 7.869538627 7.517015615 7.247235841 7.504690543 74419843 narJ Stress Oxygen limitation Nitrobacter winogradskyi Nb-255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 7.004764818 7.61424538 7.02561666 6.815925029 186682620 cellobiase Carbon cycling Carbon degradation Cellulose Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 7.954165726 7.771243333 7.530926403 7.35301332 7.426409643 7.739345301 7.432172161 7.208081328 7.447498061 6049283 nitro Organic Remediation Others Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.621910337 7.954424149 7.924997656 8.002812219 7.922319625 8.328054917 8.315449065 8.25739352 8.238151246 262404302 iuc virulence aerobactin Vibrio sp. RC586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 6.785986529 7.322634519 7.315030132 6.706830319 7.968927735 6.947693079 6.795296563 212635535 ArsC Metal Resistance Arsenic Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 7.910199317 8.291959633 7.590971381 7.524171548 7.64792878 7.063815673 7.198999015 7.577551205 7.496364191 7.290226911 7.687313122 120602933 AmiE Organic Remediation Aromatics Other aromatics Desulfovibrio vulgaris subsp. vulgaris DP4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 7.505204997 7.856263216 8.201128041 8.358657801 7.759336501 8.761825257 7.759452751 7.949686022 8.151228225 77463207 nagG Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacter sphaeroides 2.4.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 8.269003428 8.414710707 7.859165624 7.616942061 7.874431115 8.072574366 7.98209017 7.620100913 7.654018373 7.921223614 148756010 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.63742279 7.622607765 7.769833258 7.560042424 8.098110962 8.03272918 7.961444428 7.837831881 7.708253181 254393752 ureC Nitrogen Ammonification Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 8.539811532 8.54834234 8.157646236 8.152092367 8.550232302 8.667739283 8.138455165 8.712098053 8.224308703 8.10954831 8.214405068 84696747 TerZ Metal Resistance Tellurium Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 6.823284957 7.34213659 94314042 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.067847827 8.502445191 7.719808852 7.678191433 7.816554931 8.074816531 7.439489028 8.292785699 7.678468652 8.019613454 7.975390638 118570372 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 7.228583592 7.62476527 7.568673928 7.509290661 7.546443744 7.995839048 94984653 gyrB other category gyrB Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 7.25916064 7.228954527 7.324528133 7.666868868 6.815571264 7.248918624 119377911 katE Stress Oxygen stress Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 7.821185186 8.266022647 8.658364136 8.757586728 8.995037595 8.986527423 8.870012557 163867808 sigma_32 Stress Sigma factors Bartonella tribocorum CIP 105476 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella tribocorum; 6.844879621 6.992363237 218270300 cda Carbon cycling Carbon degradation Starch Clostridium hylemonae DSM 15053 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 8.006050779 8.258569024 7.45483412 7.818902451 7.685726076 7.713147172 7.411388569 8.057412761 7.430944299 7.809530042 7.624481077 169005276 ara Carbon cycling Carbon degradation Hemicellulose Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.394324395 7.302156542 7.892085345 7.518911638 7.073212192 8.147200371 7.555966714 7.479778653 7.485105084 149814921 sigma_24 Stress Sigma factors Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 7.434325581 7.229798609 7.332317624 7.613293407 7.331190244 7.789737903 7.618761788 7.391049688 110287409 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 7.790670003 7.972648342 7.745288742 7.937215551 8.230428017 7.99162324 8.131138262 7.856850269 7.990452785 27348550 sigma_32 Stress Sigma factors Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.083853585 7.543674996 6.997152488 7.021940447 126592408 SMR_antibiotics Antibiotic resistance transporter Bacillus sp. B14905 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 8.007210393 8.106533791 158523658 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.114364612 7.357653562 7.406033238 7.386533984 7.043432318 7.699305023 7.125759853 7.090532977 119897957 Arylest Organic Remediation Aromatics Other aromatics Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8.452971054 8.148074362 7.778393099 7.985416953 8.584216208 8.923731085 8.524503251 8.314051545 8.074983591 8.321381182 14027618 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 7.561010614 7.109063626 7.724316586 7.272800714 7.55126997 7.892393885 7.593363302 29606882 oxyR Stress Oxygen stress Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 7.353883143 7.85841788 7.514333294 7.470886284 7.367795793 7.309046043 806408 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 7.152217677 7.093854679 7.615101573 6.777851761 7.517019144 146407002 cnrA Metal Resistance "Cobalt,Nickel" Bradyrhizobium sp. BTAi1 8.354620499 8.193657898 8.301171838 7.898616007 8.590516612 8.185734301 8.300166238 7.909149192 8.465953789 161390776 sox Sulphur Sulphur oxidation Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 7.546133249 7.52137756 7.68751206 7.87742593 7.966751937 8.013158852 7.525992099 7.616788706 86742343 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia sp. CcI3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 7.463575621 7.639729635 7.375680123 7.250536771 7.472300289 7.622260855 7.300804636 7.538713722 109948021 ureC Nitrogen Ammonification Helicobacter acinonychis str. Sheeba superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter acinonychis; 8.008750643 8.176924377 7.70610837 7.68326641 7.21073077 39934450 nifH Nitrogen Nitrogen fixation Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.403902564 7.767965375 7.135556345 7.667630083 7.472392892 7.960828067 8.05494178 48290 amyA Carbon cycling Carbon degradation Starch Thermoactinomyces vulgaris superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Thermoactinomycetaceae;genus:Thermoactinomyces; 8.590088835 8.527455031 7.68035236 8.169177012 8.592547152 8.849295413 8.380737521 8.761317126 8.076995258 8.082762058 8.495278203 223895278 xylA Carbon cycling Carbon degradation Hemicellulose bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 8.00911441 8.133228097 8.275010212 7.395312845 7.852990506 7.881748473 7.952551181 8.070289071 197697623 ahpC Stress Oxygen stress Streptomyces sp. SPB74 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.219492321 8.11642313 7.756801506 8.380257265 8.734365878 7.4861504 8.738647231 7.689537102 8.003102933 7.771575652 237757727 katE Stress Oxygen stress Corynebacterium kroppenstedtii DSM 44385 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium kroppenstedtii; 7.258044785 7.208870577 7.073839768 7.380425852 7.829494755 7.650371353 7.575445065 7.565511469 118432700 sigma_70 Stress Sigma factors Oenococcus oeni ATCC BAA-1163 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Oenococcus;species:Oenococcus oeni; 8.019188757 8.17299821 7.145867063 7.040699687 6.701215421 7.464288913 6.73451931 7.118585887 163859040 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 8.297222732 8.3175455 7.655621196 8.266984414 8.318722602 8.681912321 7.569953291 8.753315576 7.828671698 7.869114223 8.354810206 151302311 AprA Sulphur adenylylsulfate reductase Desulfobacterium anilini 8.016739893 8.124470021 7.52769905 7.332808079 7.61099624 7.505782594 7.250103581 7.767413581 7.422053017 7.502276738 7.547462779 119449446 obgE Stress Radiation stress marine gamma proteobacterium HTCC2143 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.637605299 7.612829022 7.728478814 7.625179087 7.692720614 7.723544308 7.513199005 7.337921725 7.708287495 85710420 Arylest Organic Remediation Aromatics Other aromatics Erythrobacter sp. NAP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 8.437776558 8.296650282 7.860554896 7.469847472 7.568136248 7.753808937 7.782474924 225574172 amyA Carbon cycling Carbon degradation Starch Blautia hydrogenotrophica DSM 10507 7.671083972 7.468769305 7.537505924 7.21654408 7.68458951 7.627533031 7.407735924 8.135877065 260947310 AceA Carbon cycling Carbon degradation others Clavispora lusitaniae ATCC 42720 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Metschnikowiaceae;genus:Clavispora;species:Clavispora lusitaniae; 7.940123199 7.681652302 8.543785464 8.206106467 7.729102337 8.256417303 7.643784208 7.375119724 7.546221089 262313222 pstB Stress Phosphate limitation Acinetobacter junii SH205 7.814339292 8.087408142 7.405310864 7.150466672 207678290 gyrB other category gyrB Phaeobacter sp. M21-2.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter; 7.45229813 7.336716111 7.632448652 7.752565969 7.607758963 8.146513769 7.365891118 7.423238358 119468775 pulA Carbon cycling Carbon degradation Starch Alteromonadales bacterium TW-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales; 8.106851608 8.622600948 7.826541985 7.892191056 7.955992958 7.54450846 7.477995682 7.824168865 7.812565687 7.70653038 8.136456657 62131474 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 7.991298509 8.059040252 7.258291302 7.410665807 7.269379527 7.207195033 7.004558957 7.22664415 119535138 xylF Organic Remediation Aromatics BTEX and related aromatics Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.323421726 8.230682695 8.37599998 8.423060006 8.229784721 8.24784435 8.656278476 8.496343826 8.606682548 8.478955227 8.417982391 207739656 ChrA Metal Resistance Chromium Ralstonia solanacearum IPO1609 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 8.354203814 8.408108147 8.44432429 8.247782869 8.536117935 8.458738479 8.553955529 8.747391173 7.958983478 238061789 clpC Stress Protein stress Micromonospora sp. ATCC 39149 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 8.477743432 8.010064256 7.74778286 8.044342945 8.102998841 8.224430059 8.115574949 8.018737317 114548443 TehB Metal Resistance Tellurium alpha proteobacterium HTCC2255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.833588225 7.92326755 7.642000268 7.356824564 7.565975935 7.529311499 7.864243776 7.594965412 163258287 pcaG Organic Remediation Aromatics Other aromatics Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 7.926468523 7.997109013 7.101303961 7.093248338 7.378566068 7.344880487 7.57075771 7.037700424 6.787471804 7.54995343 1771481 napA Nitrogen Dissimilatory N reduction Pseudomonas sp. superkingdom:Bacteria;phylum:Proteobacteria; 7.033899747 7.472902891 7.705242283 7.779151753 6.983483744 8.00748039 7.282882612 7.280057646 7.686677416 227949202 AceB Carbon cycling Carbon degradation others Meiothermus ruber DSM 1279 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 7.654475205 8.372732558 8.605836807 8.826292409 8.472818087 8.734257516 8.72214384 8.991820875 8.802598378 154250811 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 7.779359696 7.516793625 8.176974942 8.281453553 7.414854133 8.473534694 7.462196236 7.467050889 8.121869819 220904074 hydrogenase Energy process Energy process Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 8.089583233 8.06325746 7.712969535 7.350835049 7.678653264 8.124707133 7.857263994 7.847613266 8.033006907 8.159579105 182374632 mhqA Organic Remediation Aromatics Nitoaromatics Pseudomonas fluorescens 7.977221597 7.71261661 7.810215212 7.702297768 7.27850265 8.076899154 7.716414047 8.381752096 8.008220489 118424256 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.2679897 7.033354123 6.769657311 7.435968429 7.192820732 7.015417778 207366715 silC Metal Resistance Silver Serratia sp. ATCC 39006 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 8.185112347 8.229902348 7.867972268 8.166915222 7.837481042 7.486125362 7.670002637 7.92901355 8.056325752 7.832244845 157680791 rubisco Carbon cycling Carbon fixation Bacillus pumilus SAFR-032 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pumilus; 7.509093136 7.099046411 7.816631978 7.540079651 7.333032256 7.641344284 7.519471221 7.964545373 261879073 ara Carbon cycling Carbon degradation Hemicellulose Prevotella bergensis DSM 17361 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bergensis; 7.457012508 7.152947129 146307613 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 7.779736029 7.385910311 8.123682184 7.991657262 7.521746503 7.37867207 7.610947797 91697558 phoB Stress Phosphate limitation Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 10.0416139 9.923360956 9.350562067 9.313679304 9.247399983 9.506172002 9.599688925 9.481914422 9.553052838 9.599411956 9.686504616 76882829 TerD Metal Resistance Tellurium Nitrosococcus oceani ATCC 19707 8.633108852 8.769609399 8.219103546 8.203048826 8.240267333 7.981867603 7.921315787 8.290066213 8.080357198 7.932871511 8.352612369 259502180 pstC Stress Phosphate limitation Lactobacillus antri DSM 16041 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus antri; 8.101521139 8.235330063 7.820992365 7.614539326 7.54507199 7.436991963 7.737484511 7.933401379 7.850044785 7.506826269 7.678723935 94494253 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Rickettsiella grylli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Coxiellaceae;genus:Rickettsiella; 7.290571457 7.300299865 7.103543316 7.229787224 7.322660267 146308011 ArsC Metal Resistance Arsenic Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 7.64978209 7.727036838 8.128740294 8.160588914 7.769782786 8.312771875 7.806797865 8.163988213 8.019331567 150955842 TehB Metal Resistance Tellurium Klebsiella pneumoniae subsp. pneumoniae MGH 78578 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 8.708480974 8.423176871 8.089937265 8.264720405 8.460943405 8.829292285 8.194485919 7.824780008 8.080941868 166367394 pilin virulence pilin Microcystis aeruginosa NIES-843 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 8.143075708 8.1682851 7.461116331 7.177149259 7.350735346 6.867204387 6.692334921 7.486488325 6.982483623 7.000292761 7.454739832 134266097 ahpC Stress Oxygen stress Geobacillus thermodenitrificans NG80-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermodenitrificans; 6.748065736 7.302752557 74420715 gyrB other category gyrB Nitrobacter winogradskyi Nb-255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 7.937602246 7.715607353 7.822679551 7.592485504 7.805852217 7.86006851 7.737137039 7.685832291 7.681830221 76058364 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.350876655 8.402646977 7.751974017 7.764590459 8.201973016 8.350708744 8.032812334 7.870770471 8.071959391 7.940552611 192764446 narG Nitrogen Denitrification uncultured bacterium 7.908490296 7.610811225 8.00957116 7.175485482 7.951495441 7.574322645 7.558219802 7.916045508 7.526546887 126437251 pcc Carbon cycling Carbon fixation Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.186975317 8.280684666 7.789374381 7.743080519 8.147264301 8.3806411 8.046735398 8.477412553 7.80419561 7.692841952 7.702110692 91691550 alkB Organic Remediation Other Hydrocarbons Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.305488365 7.598614462 7.929806178 7.923653176 7.527810368 7.779000689 7.596144374 7.998840043 116611450 sigma_24 Stress Sigma factors Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.527922047 7.4905416 7.997542019 8.230815698 7.415019313 8.254666905 7.638462425 7.524627078 8.200694509 78498621 pstB Stress Phosphate limitation Sulfurimonas denitrificans DSM 1251 6.937438366 7.174415736 27901577 gyrB other category gyrB Williamsia murale superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Williamsiaceae;genus:Williamsia; 8.625771201 8.747671264 8.009068666 7.907196174 7.925054628 8.05978286 7.964036454 7.785832162 7.768924565 8.041590141 163259450 nhh Organic Remediation Aromatics Nitoaromatics Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 7.668580664 7.622496167 8.054365137 8.137337865 7.604488351 8.374150242 7.456011133 7.408214966 7.602606375 171676269 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Podospora anserina superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 7.978493019 8.307411948 7.700741571 7.489947381 7.180813888 7.166943461 6.923061504 7.351003276 7.386012815 7.482656843 7.443793252 145586416 rubisco Carbon cycling Carbon fixation bacterial endosymbiont of Idas sp. superkingdom:Bacteria; 7.182161916 7.306102664 7.3721132 7.429391996 27352452 pnbA Organic Remediation Aromatics Nitoaromatics Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.450762716 7.784713853 7.884339297 7.345363765 7.909910654 7.301506799 7.630926883 7.710897667 16078778 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bacillus subtilis subsp. subtilis str. 168 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 7.159969368 6.938925914 6.995697617 6.698068459 6.809204714 119488584 nagG Organic Remediation Aromatics Aromatic carboxylic acid Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 7.652311033 7.882212025 7.687764959 7.346017245 7.852171899 7.978226858 7.801661272 7.458549651 7.549951209 218750818 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.999439221 7.852057623 7.097915112 7.536587656 7.56985636 7.76658633 7.316196381 7.394606749 6.977906781 7.50133414 145228953 ureC Nitrogen Ammonification Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.394399446 7.346777841 7.533581284 7.314567277 6.891985349 7.320421549 7.24595139 7.594442916 240859992 fnr Stress Oxygen stress Rhizobium leguminosarum bv. trifolii WSM1325 7.288844518 7.272430256 7.633552361 7.255760022 7.41988502 8.04399251 7.595118397 7.386386228 7.580547036 73533831 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.414796172 7.095834354 7.632503668 7.180764215 7.202225609 7.780605451 7.478177541 7.816850187 7.494679212 78061122 TerD Metal Resistance Tellurium Burkholderia sp. 383 8.562732199 8.831320988 8.827678258 8.665489724 8.276467319 8.689717178 9.17735382 8.642331177 8.933163379 8.439225447 9.166472544 94971733 AceB Carbon cycling Carbon degradation others Acidobacteria bacterium Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 7.744188194 7.698799153 7.671873513 7.823321957 7.737706171 8.031274596 7.947034917 7.520309766 7.647791437 16331338 ahpC Stress Oxygen stress Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 8.322133305 8.048787842 7.372847024 7.509778364 7.923409996 8.080847757 7.237895 8.160585008 7.398012988 7.661984161 7.731862571 59893374 nosZ Nitrogen Denitrification uncultured forest soil bacterium superkingdom:Bacteria; 7.334984067 7.147331659 7.0643363 6.728510288 7.657054774 7.179944462 7.318579516 149935517 cap virulence capsule Parabacteroides distasonis ATCC 8503 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides distasonis; 8.109800771 7.973050818 7.623346501 7.307997423 7.513796212 7.346692859 7.54727954 7.688587991 7.292183267 7.723718736 83359811 pcc Carbon cycling Carbon fixation Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 8.359884392 8.657666606 8.740006664 8.38563723 8.374622019 8.547140396 8.807342817 8.715379548 8.76340137 8.49144514 8.540473681 167034310 Catechol Organic Remediation Aromatics Other aromatics Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.825688045 7.739626908 7.75761122 7.729777458 7.554315875 8.021807425 7.570577068 7.206085251 111020733 alkK Organic Remediation Others Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7.525327067 7.778766513 7.315991734 7.404108807 7.326180029 7.768247551 7.413766997 7.377559997 119957535 pcc Carbon cycling Carbon fixation Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.153093088 8.246638681 7.695025952 7.739074349 7.868820338 7.952891843 7.75714782 8.461443509 8.188803691 7.920464552 7.68717744 240140277 fnr Stress Oxygen stress Methylobacterium extorquens AM1 7.7867461 7.714217496 7.548395891 7.30041063 7.599842949 7.669655621 7.739525462 7.298187619 7.5504831 17549197 narJ Stress Oxygen limitation Ralstonia solanacearum GMI1000 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 8.687643838 8.384989902 7.997816713 8.082105828 8.745130086 9.054067286 8.631808631 8.719093516 8.368438487 8.444867808 8.45823068 139478447 mer Metal Resistance Mercury uncultured soil bacterium superkingdom:Bacteria; 8.115975894 8.011766058 7.907269164 7.887953605 7.586250006 7.553023491 7.689949306 7.598312891 7.487329548 7.612212137 195941193 pilin virulence pilin Escherichia coli O157:H7 str. EC4024 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 8.131467563 8.150231769 7.536067269 7.562933419 7.853529681 7.554268495 7.514221268 8.296549673 7.538625898 7.191371811 7.148388954 110622527 atzA Organic Remediation Herbicides related compound uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 7.223450049 7.29827446 7.164326761 6.680162011 7.554850403 6.917794982 6.822235128 269103306 pstC Stress Phosphate limitation Photobacterium damselae subsp. damselae CIP 102761 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium damselae; 7.932803427 8.102258252 7.386106616 7.498303177 7.225277268 7.062377933 7.164047051 7.206342025 154240600 mcrA Carbon cycling Methane Methane production uncultured euryarchaeote superkingdom:Archaea;phylum:Euryarchaeota; 7.541368699 7.683460456 7.097393785 7.360258198 7.702341789 7.21761449 7.255057484 7.065839097 217412419 TerC Metal Resistance Tellurium Bifidobacterium gallicum DSM 20093 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 7.696525294 7.633555369 7.513294473 7.657125697 7.641812491 7.836435342 7.697627612 7.52369299 6.9954408 33243363 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.834406776 7.750612747 7.788283348 7.79376787 7.895730499 8.246726224 8.021357504 7.70084291 7.909325607 63029766 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.888493696 7.660739414 7.704532662 7.990254119 7.742850674 8.015520652 7.715539717 7.464624775 7.478232476 255258514 dsrB Sulphur sulfite reductase Sideroxydans lithotrophicus ES-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Sideroxydans;species:Sideroxydans lithotrophicus; 7.252781282 7.203572803 7.413994839 7.085353509 6.708820771 7.529361121 223939932 sigma_24 Stress Sigma factors bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 7.546690564 7.501023989 7.388520764 7.320043876 7.620119412 7.196960218 7.147565502 7.537024944 256425870 sigma_24 Stress Sigma factors Chitinophaga pinensis DSM 2588 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 7.850702754 8.081086866 7.145855156 7.104215974 6.90564506 7.592125432 214038716 sigma_70 Stress Sigma factors marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.909436121 7.585575619 7.510724334 7.426220517 7.298444596 7.618910767 7.368059008 7.4043965 7.558932074 115421990 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 7.641165815 7.554403177 7.849247394 8.04916816 7.607258034 7.949164125 7.073190306 7.265949562 95116075 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 6.849100961 7.012626435 6.648805234 6.915116231 7.285448361 111225183 ppk Phosphorus Phosphorus utilization Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 7.995127232 7.932718908 7.655024655 7.336380997 7.530328711 7.734632727 7.423296571 7.372641441 7.763117796 255007664 mannanase Carbon cycling Carbon degradation Hemicellulose Bacteroides fragilis 3_1_12 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 9.136792951 9.239523499 8.620817553 8.237363443 8.231450488 8.00645188 8.001440057 8.327029326 8.303905289 8.579863168 57225465 pstB Stress Phosphate limitation Dehalococcoides ethenogenes 195 7.963520644 7.710065196 7.499003839 7.502929302 7.670174052 7.691954821 7.72216017 7.876781441 124548428 cytochrome Energy process Energy process Shewanella putrefaciens 200 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella putrefaciens; 8.042701817 8.368873433 7.963804228 7.540522649 7.678909724 7.446785085 7.498645782 7.76981049 7.543690637 7.891564157 184154622 cadBD Metal Resistance Cadmium Lactobacillus fermentum IFO 3956 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus fermentum; 8.094647719 8.617360689 7.627715718 7.975320744 7.767030077 7.581747778 7.543394555 7.934106413 7.778437195 7.684019057 7.924837483 114055039 aclB Carbon cycling Carbon fixation Sulfurihydrogenibium subterraneum superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Hydrogenothermaceae;genus:Sulfurihydrogenibium; 7.333520747 7.300559403 7.356757637 151576137 pbrA Metal Resistance Lead Ralstonia pickettii 12D 8.624145423 8.336047324 7.619561843 7.353390733 7.758945856 8.254030646 7.747514316 8.488608069 7.686419217 7.994376528 7.990937132 156869807 dsrB Sulphur sulfite reductase Clostridium leptum DSM 753 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 7.187895399 7.207621156 7.080114988 6.636610011 7.615534961 7.312496428 6.720301195 6.942224543 146410370 AceB Carbon cycling Carbon degradation others Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.387461198 8.187000245 7.90506471 8.026568579 8.340439581 8.16007999 8.113893554 7.91713284 8.163548827 94314511 MFS_antibiotic Antibiotic resistance transporter Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 7.691408981 7.472097301 7.567559263 7.44412131 7.690709226 7.739186253 7.760133738 7.935076479 7.644418928 152967448 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 8.171868314 8.122158283 8.322038864 8.239510852 8.124410635 8.03609884 8.447042881 8.339815322 8.259105285 7.994200094 7.999975921 156523549 todC Organic Remediation Aromatics BTEX and related aromatics uncultured bacterium superkingdom:Bacteria; 8.17261087 8.157596207 8.163804716 8.122249115 8.046665648 8.402693276 8.223800763 8.110922256 8.048450295 222437914 pstC Stress Phosphate limitation Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 7.25593918 7.863540136 8.239734622 7.207697862 7.270740678 7.165380862 7.942926919 258561643 cda Carbon cycling Carbon degradation Starch Corynebacterium genitalium ATCC 33030 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium genitalium; 8.214474982 8.342109789 7.628458698 7.747970732 7.794634662 7.830794879 8.134556853 8.122482143 8.026870482 7.954357768 8.126313344 113903222 endochitinase Carbon cycling Carbon degradation Chitin Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 7.493515435 7.584072546 7.43070777 7.590276891 7.254174406 7.980097612 7.423638029 7.456976903 7.633566327 13474207 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 8.762848596 8.788459348 8.990572055 9.016630221 8.545220341 9.008087284 8.84801612 8.910960303 8.93048269 9.063455845 8.498991672 70607937 ferredoxin_oxidoreductase Bioleaching Electron transport Sulfolobus acidocaldarius DSM 639 7.971486186 8.224643967 7.160425883 7.131927317 7.222070623 7.438895606 27315038 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Staphylococcus epidermidis ATCC 12228 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus epidermidis; 8.13868539 8.083457254 7.430720844 7.167992959 7.668853997 7.578243618 7.33426017 7.842055914 7.221174031 7.489166406 7.588093897 219869003 tutFDG Organic Remediation Aromatics BTEX and related aromatics Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 8.236574801 8.019110253 8.267928448 8.334877549 8.320465638 8.418851974 8.436221583 8.426999603 8.867989821 95928648 proV Stress Osmotic stress Desulfuromonas acetoxidans DSM 684 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Desulfuromonadaceae;genus:Desulfuromonas;species:Desulfuromonas acetoxidans; 7.614678756 7.459824179 7.38157234 7.028766805 7.558095588 7.876577362 7.330941101 7.245483185 7.342956243 237801364 ahpF Stress Oxygen stress Pseudomonas syringae pv. oryzae str. 1_6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 7.553927868 7.53787236 189419538 narJ Stress Oxygen limitation Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 7.655704549 7.573194462 7.551322464 7.286230067 7.319216397 7.999398853 7.596220298 7.480688781 7.665968162 13249533 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.501191725 8.663064909 8.736431848 8.55626664 9.026439542 8.590867003 8.73708644 8.575255125 8.453063182 12667562 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium UMTRAdsr826-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 7.737178441 7.953020159 8.311638948 7.896662825 8.494950563 8.23101856 8.411763111 8.087031991 13021902 endochitinase Carbon cycling Carbon degradation Chitin Vibrio harveyi superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.733489588 7.908282182 6.944421343 7.010109774 114315750 pstA Stress Phosphate limitation Granulibacter bethesdensis CGDNIH1 7.996327404 8.187189377 7.6374901 7.399439443 7.387331805 6.932132116 7.633862043 7.310339956 7.228391335 7.205398505 126730240 sigma_70 Stress Sigma factors Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 8.504837581 9.003615508 8.231281442 8.184143542 8.780117099 8.539316597 8.621538232 8.653897905 221069242 pcc Carbon cycling Carbon fixation Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.680955131 8.495708216 8.757745311 8.856801077 8.830658601 8.456676277 9.174706127 8.092911125 8.895277206 8.84909947 8.861733514 91693869 ChrA Metal Resistance Chromium Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.863812764 7.927459653 7.786493292 8.122672618 8.350871726 8.264968031 8.135496734 7.746568618 8.040701718 224827256 sigma_32 Stress Sigma factors Lutiella nitroferrum 2002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Lutiella;species:Lutiella nitroferrum; 7.370281199 7.419095914 7.348594964 7.320381236 18160975 dsrA Sulphur sulfite reductase Pyrobaculum aerophilum str. IM2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum aerophilum; 8.529920564 8.805891813 8.021483899 8.040011516 8.006760202 7.741093388 7.957867484 7.980064029 8.220645146 7.908531788 8.260297465 183602673 gyrB other category gyrB Bifidobacterium animalis subsp. lactis HN019 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 8.743021195 9.003249579 8.667543554 8.662815889 9.423496057 8.492509325 9.193717757 9.081059469 8.936850271 97954686 nirK Nitrogen Denitrification Ochrobactrum sp. R-26889 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum; 8.328958661 8.41121323 7.803587242 8.002089462 8.267436393 8.046340613 7.730605811 8.37747413 7.776794719 7.625654678 7.929774196 197287488 ureC Nitrogen Ammonification Proteus mirabilis HI4320 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 8.183026011 8.017795668 8.224848232 8.291956318 8.131595226 8.140403391 7.897375179 7.927428033 7.980348386 221157151 catechol_B Organic Remediation Aromatics Other aromatics Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 8.242818961 7.931728787 7.796813787 8.075198767 8.165867276 7.963467343 8.176785627 7.774231686 7.885208829 121555862 fnr Stress Oxygen stress Verminephrobacter eiseniae EF01-2 8.109516368 8.242912277 7.368704506 7.287516038 7.395798945 7.611807214 7.07148073 8.075401064 7.127756977 7.098811875 7.395182666 50842178 CopA Metal Resistance Copper Propionibacterium acnes KPA171202 8.142692596 8.054372838 7.967904558 8.215542619 7.669761056 7.632133424 8.409099143 8.307275107 8.129152103 8.154080519 8.011387444 147848118 pstB Stress Phosphate limitation Synechococcus sp. WH 7803 8.040331667 8.039387435 7.340663514 7.289655114 7.24183276 6.56370507 7.642677898 6.917169702 7.32992509 149926211 hrcA Stress Heat shock Limnobacter sp. MED105 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 7.972127367 8.41297264 7.754428032 7.646978395 7.344022923 7.34245693 7.45001465 7.581533101 7.372872075 7.823586445 19912103 gyrB other category gyrB Cytophaga sp. I-1858 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Cytophaga; 8.483712009 8.77358794 8.229544861 8.08303257 8.142376491 8.090687777 8.310047178 8.04187234 8.362370165 8.173516332 8.389038645 146279405 hydrogenase Energy process Energy process Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 7.787643597 7.730099017 8.166700403 8.294236484 8.308972721 8.144601024 8.506520179 8.22571955 8.344273817 63257798 iro virulence Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 8.327595689 8.157468641 8.26012513 8.410185908 8.181958681 7.907055952 8.585108191 8.094621054 8.479793658 8.444544808 8.154727333 160888762 ChrA Metal Resistance Chromium Bacteroides uniformis ATCC 8492 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides uniformis; 8.202727698 8.485355126 8.012177511 7.854618174 7.763021526 7.625038041 7.596708353 7.669297889 7.500793877 8.021892247 226324147 nplT Carbon cycling Carbon degradation Starch Coprococcus comes ATCC 27758 8.295027922 8.396028931 7.784567112 8.305037604 8.123676736 8.546662878 8.068323849 157916699 TerC Metal Resistance Tellurium Salinispora arenicola CNS-205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 8.068312143 8.319189254 8.719170171 8.973427484 8.643148622 8.656554528 8.591991773 8.543130421 8.876652717 157320388 katE Stress Oxygen stress Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 6.990876167 7.383938113 7.165731769 7.567061128 7.278229114 56677635 sox Sulphur Sulphur oxidation Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 7.912420641 8.21162114 7.290971906 7.33406438 7.559041124 169793376 narG Nitrogen Denitrification uncultured bacterium 8.052211704 7.746980344 7.739062903 7.633677137 8.652631576 8.063819648 7.796409855 7.973759109 111019699 alkK Organic Remediation Others Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.143350677 8.255101339 8.495615617 8.280456148 7.89330791 8.086756721 8.663049903 8.302562532 8.39739134 7.945670417 8.137723633 21280309 terminase_large_subunit Bacteria phage REPLICATION Vibrio phage KVP20 order:Caudovirales;family:Myoviridae;genus:T4-like viruses;species:Vibrio phage nt-1 sensu lato; 7.299872161 6.965115264 6.886653295 7.049277927 254380529 katE Stress Oxygen stress Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.140518671 8.684206709 8.232579237 8.413494125 7.68156746 8.37642907 8.401594447 198262449 CusA Metal Resistance Copper gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.984553329 7.500078584 7.35975816 7.624486923 7.652389793 7.834095195 7.508829021 7.615837624 7.303636168 213970123 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 7.434909831 6.723944182 2921430 BADH Organic Remediation Aromatics Other aromatics Rhizobium tropici superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 8.495590086 8.261284231 8.257367923 8.369077518 8.30922307 8.109052689 8.227329534 8.620650805 3283950 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.471658828 8.54682625 8.233282371 8.217012086 8.753535519 8.203591175 8.463601618 8.198790453 8.208622511 206678210 alkB Organic Remediation Other Hydrocarbons Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.185686668 8.399533947 7.907750529 8.168577249 8.227576323 8.492451674 8.300713916 8.187566945 8.031853914 8.385032434 8.285456284 119952636 nhh Organic Remediation Aromatics Nitoaromatics Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 7.309789058 7.202876198 6.782980292 7.528430801 7.485830912 7.392018668 7.353830986 7.125738388 260597678 glnA Stress Nitrogen limitation Cronobacter turicensis 7.726772507 7.394284777 7.180133769 7.193385827 7.028978888 7.394110439 7.24301912 7.305883722 208936533 dsrA Sulphur sulfite reductase uncultured prokaryote 7.898188444 7.941073365 7.507230756 7.314368074 7.605174344 7.544713836 7.324351936 7.714731964 7.535046911 7.700233381 46112504 katE Stress Oxygen stress Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 7.613369351 7.457333759 7.870171579 7.393519917 7.054605579 111151062 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 8.03233501 7.610887397 7.613287972 7.61681043 8.049747748 7.617726707 7.633569286 227991337 AceB Carbon cycling Carbon degradation others Meiothermus ruber DSM 1279 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 7.956270343 8.157125768 7.950639796 7.900005887 7.766340314 7.413225816 8.1694903 8.246781049 8.043573776 8.042667364 8.108334539 152981402 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 8.467434025 8.287765861 8.600306468 8.354126718 8.089624902 8.237147347 8.257896406 8.461022493 8.434219659 8.347516638 8.12134247 189203397 pheA Organic Remediation Aromatics Other aromatics Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7.729131304 7.537934595 7.934262959 7.833475112 7.51102886 7.997314812 7.655007033 8.081102639 119717967 ArsC Metal Resistance Arsenic Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.564927197 8.587388162 8.139270665 8.74419153 8.656333231 8.446672689 8.672685728 8.510212794 8.26608158 169793654 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 8.252387499 8.172636743 7.85891455 8.225665265 8.173823882 8.250956147 8.228401081 8.05735895 8.134150523 257871079 nplT Carbon cycling Carbon degradation Starch Enterococcus gallinarum EG2 8.16210881 8.423265276 7.847298615 7.455583279 7.381540299 7.078981824 7.054319917 7.385611483 7.343500092 7.50892298 213965752 CopA Metal Resistance Copper Corynebacterium amycolatum SK46 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium amycolatum; 8.650277865 8.593303576 8.575950403 8.314439241 8.239181225 8.612130425 8.442137681 8.260416178 8.535514939 8.466658499 8.13610168 223890914 clpC Stress Protein stress bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 7.908845149 7.985827068 8.350759348 8.414658604 7.801341222 8.163086619 7.982843421 8.249418076 8.283854147 25029419 nagG Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 8.206247056 8.421187992 8.012536175 8.015515012 8.109023654 8.326827095 8.069407909 8.158004742 8.128298197 7.847642781 7.846808411 146305922 iro virulence Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 7.828876661 7.749336364 7.677988645 8.214323831 8.236144648 7.776733578 8.065495301 20804138 phn Organic Remediation Herbicides related compound Mesorhizobium loti superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium; 8.228018541 8.430200658 7.688477859 7.530913967 7.692632165 7.522375676 7.31680216 7.860718983 7.381969849 7.592936289 7.715913087 151357479 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.342286131 8.521517673 7.598337007 7.54870916 7.827442787 8.072080404 7.632002353 7.709241159 7.828118822 7.426332835 133913196 alkK Organic Remediation Others Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 7.133106538 7.55369335 7.876784125 7.563643658 7.579143817 7.353018696 7.681211618 198263594 nhh Organic Remediation Aromatics Nitoaromatics Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 7.942850924 7.932907004 7.823236362 7.641620339 7.724909697 8.236790328 121590006 pilin virulence pilin Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 7.10251834 7.213733342 260778197 iuc virulence aerobactin Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 7.905078324 8.135611124 6.759649939 7.220957012 189194177 pheA Organic Remediation Aromatics Other aromatics Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 8.86546106 8.754062361 8.497869208 8.675403529 8.574361723 8.389128694 8.394560462 8.239390231 7.703125799 8.742219982 115500938 gyrB other category gyrB Pseudomonas indica superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.834111377 7.90941024 7.794930032 8.247858539 7.981361862 8.130344137 8.187714394 8.237803811 7.941515575 53804601 pstB Stress Phosphate limitation Methylococcus capsulatus str. Bath 9.310504612 8.886042137 8.321420458 8.504069872 8.980810923 8.427508062 8.865621619 8.998767126 8.500336586 196173540 TehB Metal Resistance Tellurium Anaeromyxobacter sp. K superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 7.732088954 7.716619326 7.83411116 8.149897121 7.754255558 8.21367563 8.090664116 7.988533949 7.863722131 118165717 nahA Organic Remediation Aromatics Polycyclic aromatics Mycobacterium avium 104 7.873385818 7.842281982 7.726329398 7.851086974 7.9628115 7.818121147 7.947172565 7.94967163 8.189398713 256726157 phoA Stress Phosphate limitation Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 8.052438413 8.352599932 8.321089529 8.421502582 8.384518961 8.486742082 8.429137718 8.246712895 8.249009721 8.30152546 8.209535262 4204385 xylG Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas sp. A8AN3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.041572694 8.254629537 8.132182053 7.887819193 8.271876698 8.368538037 8.087352377 8.369770062 91780559 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.440919196 7.508554822 7.476998311 6.90724486 7.425926838 7.676587848 7.679526496 7.570376111 7.593850178 108760429 pstC Stress Phosphate limitation Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 8.654333024 8.582628126 8.162709377 8.194143185 8.183335258 7.743813419 8.080781487 8.312724833 8.28537359 8.296057749 8.50671324 227948494 fnr Stress Oxygen stress Meiothermus ruber DSM 1279 8.516501901 8.591735162 8.0452982 7.971948426 8.145278368 8.255055832 7.847107339 8.27030991 8.124377673 8.277509377 7.864132057 90418027 sigma_70 Stress Sigma factors Aurantimonas manganoxydans SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 8.495954278 8.571814035 8.634002323 8.736059485 8.450744881 8.541127598 8.968329396 8.788232057 9.01400604 8.828199573 8.698183916 46850292 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.243731671 7.551761551 7.802147395 7.483032665 7.488416152 7.583668741 83770048 pheA Organic Remediation Aromatics Other aromatics Aspergillus oryzae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 7.981020413 8.046510941 7.534510369 7.69836784 7.720906926 8.255892185 7.811755429 7.748154373 198260697 ara Carbon cycling Carbon degradation Hemicellulose Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 7.471111281 7.619514993 7.691104295 7.397094297 7.553749371 7.737673292 7.459115317 7.304088764 7.596055551 86567486 oxyR Stress Oxygen stress Frankia sp. CcI3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.384457476 8.087091142 7.69253549 7.572286995 7.84485143 7.853691222 7.525372718 8.045081569 7.75432029 7.399767801 7.818403382 256722707 ahpF Stress Oxygen stress Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 8.108439122 8.38949909 7.760387166 7.338573082 7.564618558 7.419638716 7.277789578 7.599010072 7.17382254 7.245221213 7.679503087 125486857 FTHFS Carbon cycling Acetogenesis uncultured bacterium superkingdom:Bacteria; 7.684870586 7.41270632 7.742025061 7.690542556 7.841217928 8.154690942 8.166551924 7.906988656 8.136822987 139478467 mer Metal Resistance Mercury uncultured soil bacterium superkingdom:Bacteria; 7.691657036 7.471098633 7.55302779 8.032111066 7.836865617 8.054265872 7.727032269 8.082538689 7.419406638 134093754 phoB Stress Phosphate limitation Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 7.536970836 8.139633523 7.956987882 7.200102612 7.716417402 7.48122391 7.862750603 7.361127475 145248315 tfdA Organic Remediation Aromatics Chlorinated aromatics Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.37542469 7.304218433 7.393769088 7.369137287 7.00585384 7.406739862 7.333944799 7.345545382 78168011 gyrB other category gyrB Synechococcus sp. CC9902 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.85843173 7.61839793 7.313121015 7.170914746 7.62351978 7.557916946 7.422235854 7.514528245 7.68279494 145963797 cap virulence capsule Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 7.130176971 7.027751675 6.969899121 55230011 nosZ Nitrogen Denitrification Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 7.852780301 7.879204207 7.566669511 7.678699058 7.947033569 8.024993186 7.508433768 7.565079536 7.504705289 146310975 tutFDG Organic Remediation Aromatics BTEX and related aromatics Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 8.356438609 8.197497723 8.502577535 8.960462107 8.484697029 8.392608611 8.634530154 8.063568744 8.369422377 8.548822765 170656608 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 8.4802362 8.254614583 7.989335474 8.267694143 8.384892174 8.321557848 8.199294825 8.073642558 8.010470419 162568497 aoxB Metal Resistance Arsenic Leptothrix sp. S1-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix; 7.505790284 7.757455357 7.488568535 7.984250264 7.606699085 7.663239438 7.757791657 19917426 glnA Stress Nitrogen limitation Methanosarcina acetivorans C2A 9.030185905 8.75125934 8.159690196 8.510793134 8.875686722 9.061561856 8.808109115 8.469448176 8.499171542 8.716667622 8.700645827 133948800 Catechol Organic Remediation Aromatics Other aromatics uncultured bacterium 8.383762882 8.717389225 8.751947756 8.921946939 9.171949973 8.84647479 9.28511914 9.1921219 9.200886927 134095158 ArsC Metal Resistance Arsenic Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 7.366873864 7.814253022 7.704455499 7.793388017 7.399523961 7.619817233 7.55054981 7.780408471 7.825459415 113526479 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 7.872202192 7.502487882 8.111356565 8.105286355 7.8487648 8.177300722 7.752509703 7.794525339 7.654337874 149188723 AceB Carbon cycling Carbon degradation others Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 8.057191132 8.141141506 6.986472527 6.814142734 7.376917749 212536648 endoglucanase Carbon cycling Carbon degradation Cellulose Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 8.415160489 8.35269716 8.464867195 8.34495278 8.265767298 8.010492127 8.657591843 8.102176989 8.162010945 7.759350994 8.392437519 226906631 iuc virulence aerobactin Citrobacter sp. 30_2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter; 8.092879918 7.928619281 7.603321599 7.923770899 8.107906701 8.233899736 7.945795854 7.700528227 7.902069921 88799500 pilin virulence pilin Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 7.456323644 7.686936525 7.278036669 7.688124637 7.489046454 8.064736461 7.625038559 7.361684632 7.314383389 162568561 aoxB Metal Resistance Arsenic uncultured bacterium superkingdom:Bacteria; 7.960128509 8.504790766 7.952500022 7.820817251 7.737686619 7.685875063 7.909584619 7.876297176 7.844239885 7.829516301 7.903904911 19888411 ArsA Metal Resistance Arsenic Methanopyrus kandleri AV19 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanopyri;order:Methanopyrales;family:Methanopyraceae;genus:Methanopyrus;species:Methanopyrus kandleri; 8.402267824 8.283429384 7.585567773 7.857694938 8.097553447 8.466887721 7.584731059 8.54418977 7.688375178 7.405039564 7.911022095 170121034 alkK Organic Remediation Others Escherichia albertii TW07627 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 7.344069237 7.373271619 7.171247866 7.662154653 7.641704608 7.961450801 7.761244452 89242002 rubisco Carbon cycling Carbon fixation Trichodesmium erythraeum IMS101 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Trichodesmium;species:Trichodesmium erythraeum; 7.474610981 7.34671436 7.479749104 7.50157378 6.934618728 7.752490309 7.406695406 7.34068954 7.917724875 256393823 amyA Carbon cycling Carbon degradation Starch Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 8.093100109 8.091495005 7.180627587 6.900564445 7.133430028 6.921658844 7.525064878 225793346 cydB Stress Oxygen limitation Acidobacterium capsulatum ATCC 51196 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteria;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 7.552170271 7.525087723 7.456065781 7.080936239 7.540196982 7.518003585 7.91214415 209695978 arcB Stress Oxygen limitation Aliivibrio salmonicida LFI1238 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Aliivibrio salmonicida; 8.098783599 8.090749754 7.205139664 7.155085757 7.790040571 8.159592539 7.23170518 8.159870657 7.581739579 7.490148829 7.62350768 118028586 tfdA Organic Remediation Aromatics Chlorinated aromatics Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.088193807 8.255690836 8.036284275 8.221395781 8.07653918 7.971307964 8.364404811 8.335023278 8.091813351 8.323245356 8.320341597 238927898 hrcA Stress Heat shock Selenomonas flueggei ATCC 43531 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas flueggei; 7.844180569 7.780502873 7.694686293 7.752179849 7.711680132 8.146585169 7.742130666 7.786265437 7.626656919 148253133 tmoABE Organic Remediation Aromatics BTEX and related aromatics Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.953389171 8.220557137 7.839024724 7.864218243 7.767236671 7.323050744 8.148601667 7.83210005 7.977633522 7.51160057 7.75100301 256780336 B_lactamase_A Antibiotic resistance Beta-lactamases Streptomyces hygroscopicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces hygroscopicus; 8.996521687 8.740514682 8.54358628 8.275779094 8.607027321 8.804985154 8.550457298 8.992173166 8.565875398 8.534657395 22855150 terminal_protein_linear_DNA_phage Bacteria phage REPLICATION Bacillus phage B103 order:Caudovirales;family:Podoviridae;genus:Phi29-like viruses; 7.150262462 6.644449512 7.021390185 3059204 cumA Organic Remediation Aromatics Other aromatics Rhodococcus erythropolis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7.708659156 8.109848633 8.43338967 8.045779362 8.207192557 7.885031527 8.380333094 7.731573124 115394382 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 8.021296696 7.929633125 7.655717787 8.06501701 8.083426783 7.900730402 7.937094847 7.455678326 7.812195027 91690443 bphA Organic Remediation Aromatics Polycyclic aromatics Burkholderia xenovorans LB400 7.295617742 7.382817497 7.402678836 7.412709992 7.201885994 7.407465508 7.411840051 7.692169345 119377538 fnr Stress Oxygen stress Paracoccus denitrificans PD1222 7.81296018 7.993828677 7.208853613 7.180449551 7.463357168 7.036212308 7.001885371 7.67972353 7.371788976 7.286889251 7.43933131 12720932 TehB Metal Resistance Tellurium Pasteurella multocida subsp. multocida str. Pm70 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Pasteurella;species:Pasteurella multocida; 8.236490589 8.259434059 7.590350692 7.288032073 7.285923771 6.913660641 7.40318004 161159755 alkK Organic Remediation Others Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 8.001393319 8.283512721 8.135908185 8.007407939 7.709173088 7.994779018 7.754132702 8.185079226 7.948412022 7.879805784 7.651679393 156450784 CopA Metal Resistance Copper Methylobacterium chloromethanicum CM4 8.57926377 7.998121492 8.17214201 8.464786799 8.490138036 8.203274864 8.672612959 8.281260769 8.539864176 8.49644001 8.289102142 158319749 TerD Metal Resistance Tellurium Alkaliphilus oremlandii OhILAs 7.291659968 7.431861486 7.414190588 7.286536208 7.269375741 7.606448777 7.630137031 7.608242643 7.42222417 2975 AceB Carbon cycling Carbon degradation others Neurospora crassa superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora; 8.099245491 8.229704394 7.513241983 7.981005065 7.812403974 7.784389628 6.813070289 7.384783618 7.429339639 7.956339235 113473767 bphF1 Organic Remediation Aromatics Polycyclic aromatics Sphingomonas sp. KA1 8.059363707 7.843425544 7.816356451 7.784637662 8.089770796 8.088159087 8.128586426 8.112130837 8.001465957 217400191 amyA Carbon cycling Carbon degradation Starch Bifidobacterium gallicum DSM 20093 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 7.485649016 7.460975444 7.98232714 7.517037233 69933443 SMR_antibiotics Antibiotic resistance transporter Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 7.864319979 8.070298445 8.076486002 7.931076398 7.84318467 7.747470276 8.025546618 8.014206848 7.997975841 8.387913397 7.944608437 115259934 pcaG Organic Remediation Aromatics Other aromatics Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.478654875 8.313670249 8.542150036 8.580212099 8.37208552 8.731864061 8.660139291 8.166122066 8.525354004 8.729494629 8.224296561 21699002 narI Stress Oxygen limitation Bacillus licheniformis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.909306295 8.366027583 7.255331764 7.442321348 7.277202899 7.009596841 7.218038785 7.68345631 7.513985599 7.476696907 7.54416494 157679072 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.153916736 7.375354087 7.41280626 7.132565412 7.51247588 7.094618731 6.809930752 51891884 pstB Stress Phosphate limitation Symbiobacterium thermophilum IAM 14863 8.006163265 7.930450968 7.76483775 8.177006811 8.061274552 8.221460988 8.063703399 8.08789264 7.793799939 222148686 cspA Stress Cold shock Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 7.939378321 7.985852689 7.719901659 7.65693788 7.517524067 7.821930611 7.449094325 7.820496962 7.70896693 148569430 carA Organic Remediation Aromatics Heterocyclic aromatics Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 8.25647217 8.34890722 8.323592851 8.171479611 7.925500137 8.416356152 8.394936833 8.425630091 8.428257515 8.578634244 8.135808558 109290250 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.753271311 7.860392879 7.578592368 6.703854267 7.554713067 7.494923561 7.229750127 7.308912877 7.682417843 194540314 ppk Phosphorus Phosphorus utilization Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.382355422 7.501460215 7.360694252 7.07438269 7.548138939 7.723417653 7.515433622 7.389731268 7.697565343 82795281 type_III_secretion virulence secretion Pseudomonas syringae pv. tagetis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 7; 8.002823928 8.006253583 7.764954512 7.576251949 7.417951445 7.418252123 7.862246415 8.193079327 7.922983907 7.607184512 7.671235239 209534824 katE Stress Oxygen stress Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.516576301 7.488774796 7.57269359 7.868011524 7.787746715 7.88406836 7.818677474 7.794316523 153821437 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Vibrio cholerae B33 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 8.141217587 8.448109668 8.010356679 7.593013432 7.608075297 7.734351173 7.777208214 7.819363935 8.026870516 8.054321561 169832028 APS_AprA Sulphur adenylylsulfate reductase Candidatus Desulforudis audaxviator MP104C superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Candidatus Desulforudis;species:Candidatus Desulforudis audaxviator; 8.140055735 8.3563178 7.92596471 8.121810639 7.933881472 8.011689056 8.207584104 7.963497561 8.228334297 8.196049862 7.927922894 93354478 silC Metal Resistance Silver Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 7.989780702 7.538649192 7.792796955 7.686492844 7.832439867 7.753677668 7.823759344 7.502489565 186682180 sigma_70 Stress Sigma factors Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 7.817989485 8.328334961 7.049463661 7.077083863 119867531 CopA Metal Resistance Copper Mycobacterium sp. KMS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.915639515 8.336709567 7.722685215 7.870981892 7.697728621 7.467268744 7.441355909 7.180080525 7.612813147 7.446448571 74038350 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.070375555 8.163150123 8.080170832 7.986894534 8.209859262 8.072508783 7.955906376 8.013326104 7.762108021 8.020315933 7.961251358 194289421 pnbA Organic Remediation Aromatics Nitoaromatics Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 7.81580452 7.707139563 8.031805738 7.429779271 8.097293575 7.886576724 7.939679378 8.092677283 7.655733492 149805632 ChrA Metal Resistance Chromium Moritella sp. PE36 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Moritellaceae;genus:Moritella; 8.02781487 8.094553388 7.61734593 7.713788687 7.88932054 7.952999118 7.808445044 7.737389272 170142654 ALN Organic Remediation Others Burkholderia graminis C4D1M 7.926870982 8.203058545 8.073603152 7.85386984 7.766196557 7.361180981 7.760774626 8.06768146 7.813259631 7.588051248 7.746562403 149360142 pimF Organic Remediation Aromatics Aromatic carboxylic acid Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 8.483029497 8.385890657 8.201078987 7.842636608 8.403441631 8.21784471 8.367060546 8.350444475 8.25750153 119962834 HBH Organic Remediation Aromatics BTEX and related aromatics Arthrobacter aurescens TC1 7.112623973 7.035320853 6.760217381 6.723158481 7.341743748 150955430 trzN Organic Remediation Herbicides related compound Klebsiella pneumoniae subsp. pneumoniae MGH 78578 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 8.194495398 8.494350317 7.721227829 7.782688623 7.8029049 8.420658055 7.444888316 7.755219186 7.616237641 7.506708225 257791063 sigma_70 Stress Sigma factors Eggerthella lenta DSM 2243 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Eggerthella;species:Eggerthella lenta; 8.003167164 7.885942809 7.998989583 8.58301176 7.98717147 7.773541817 7.87832093 156191996 amyA Carbon cycling Carbon degradation Starch Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 8.159983241 8.150279422 7.999633191 8.037854848 8.068331565 8.054549825 8.585108191 8.047299846 8.217852506 8.378184827 8.40203041 32472264 oxyR Stress Oxygen stress Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 7.696048845 8.036563347 7.65989584 7.530658607 7.259984709 7.436582263 7.496538941 7.891137974 7.374915386 7.358761799 7.269153234 229328674 pcc Carbon cycling Carbon fixation Geobacillus sp. Y412MC52 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.819772176 7.778834444 7.656102811 7.844142425 8.187792599 8.005052899 8.182130038 7.853048613 8.096452803 758211 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia cepacia superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.766554558 7.650578137 7.365435348 7.243357588 7.302802107 7.625153137 7.505357942 7.173892435 7.241924017 40253028 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6.587124434 7.511122881 6.91543311 6.932311422 89096746 phoA Stress Phosphate limitation Bacillus sp. NRRL B-14911 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.195493266 6.844411198 7.086203372 10443292 thmAB Organic Remediation Others Pseudonocardia sp. K1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia; 7.191295857 7.06209859 7.474849375 7.347368018 6.953092975 7.834120966 7.521551209 7.36079489 157960737 arcB Stress Oxygen limitation Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 7.832980959 7.871016156 7.128347293 7.067663651 7.339243014 7.026643356 7.039561506 7.034239967 29611054 TerZ Metal Resistance Tellurium Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 7.237885151 7.527552449 7.362583847 7.845953478 7.623326523 7.446709533 7.543817039 8347027 TerD Metal Resistance Tellurium Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 7.524951868 7.558760298 7.820554403 7.812491116 7.593393195 8.2692681 7.480538815 7.294128243 7.521109518 72119267 pstC Stress Phosphate limitation Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.53980642 7.497959383 7.534911549 7.06917846 7.266947824 7.706133675 7.182400827 7.309396989 7.553831801 119694660 tfdA Organic Remediation Aromatics Chlorinated aromatics Mycobacterium sp. KMS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.083888736 8.201510067 7.936786372 7.867634266 7.579130038 7.817378612 7.784375371 7.880897482 7.674799792 170078395 fnr Stress Oxygen stress Synechococcus sp. PCC 7002 8.053132558 7.937937111 7.718442685 7.74999804 7.810699503 8.023282895 7.830449025 7.687596332 7.507483402 194310701 dsrB Sulphur sulfite reductase Prosthecochloris aestuarii DSM 271 7.247053555 7.387406471 7.873096843 8.486366191 7.881255174 7.741250921 7.338174977 7.801583251 124497462 cda Carbon cycling Carbon degradation Starch Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 7.996418377 8.081099633 7.972852322 8.005208774 7.985676326 7.58321495 7.820322583 7.870699981 7.818353117 7.965044251 8.087681396 160917426 narG Nitrogen Denitrification uncultured bacterium 8.064004677 7.337320997 8.374083045 7.349350137 7.966370816 7.960440246 7.688091304 8.108627948 7.459336404 37526188 xylA Carbon cycling Carbon degradation Hemicellulose Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 8.353060575 8.609478483 7.781745841 7.689586733 7.78603306 7.593093238 7.411939399 7.909431444 7.523395958 7.493821247 7.892880006 144905877 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.759312522 7.703805383 8.213157703 8.084501455 8.055294738 8.3148777 7.682956835 7.736073114 7.690207759 160917617 narG Nitrogen Denitrification uncultured bacterium 8.201913092 8.565757901 8.217556291 8.113445568 8.261690972 7.863865036 8.153536171 8.150037282 8.055919726 8.285246512 7.991249697 149983 adpB Organic Remediation Pesticides related compound Mycobacterium sp. superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.393851314 7.47106405 7.687805937 7.841276059 88816192 nitA Organic Remediation Aromatics Other aromatics marine actinobacterium PHSC20C1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 8.279804489 8.690996639 7.986595974 7.957382972 8.095208091 7.821592539 7.760695532 8.090395682 8.262741489 8.196778253 8.172514318 269145482 MFS_antibiotic Antibiotic resistance transporter Neisseria cinerea ATCC 14685 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria cinerea; 8.517934282 8.314983864 7.95717656 8.20725775 8.281036677 7.733390979 7.753691326 8.32530466 7.752970329 8.521614169 7.951487358 78221395 cytochrome Energy process Energy process Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 7.277279772 7.27371853 7.384319808 7.41035083 6.777371233 7.086074484 7.615935676 219680452 alkK Organic Remediation Others gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.534665814 8.423192773 8.662313631 8.594282404 8.229412159 196255338 cadBD Metal Resistance Cadmium Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.543802771 8.290636959 7.841571096 8.212044771 8.352159088 8.054227626 8.076514067 7.881721251 7.746377769 153091083 pnbA Organic Remediation Aromatics Nitoaromatics Mannheimia haemolytica PHL213 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Mannheimia;species:Mannheimia haemolytica; 7.535573299 7.24431177 7.353470276 7.331681411 7.567968129 7.234504927 7.084844906 7.29623644 227505557 amyA Carbon cycling Carbon degradation Starch Corynebacterium striatum ATCC 6940 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium striatum; 8.717428167 8.928164205 8.585916095 8.791447967 8.918476397 8.829261998 9.155418641 8.52764863 9.198472129 9.015863053 9.131518792 55379886 grpE Stress Heat shock Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 8.061878714 7.970203808 7.808000002 7.993173551 7.936236262 7.47719227 8.102322276 8.008811118 8.121769574 7.816787426 7.910078754 18034241 APS_AprA Sulphur adenylylsulfate reductase Desulfotomaculum alkaliphilum superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 6.969658059 7.2844311 7.16664386 7.058051059 7.54701148 13362854 dmsA Organic Remediation Others Escherichia coli O157:H7 str. Sakai superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 8.017408375 8.121472281 7.83363756 7.601831748 7.348738399 6.988254026 7.145993731 7.616766255 7.421695557 7.492507494 193211690 gyrB other category gyrB Chlorobaculum parvum NCIB 8327 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum parvum; 7.181032606 7.126296745 7.539694878 7.149736666 7.018384714 7.205064411 7.429009362 7.691050116 117577833 SilA Metal Resistance Silver Gramella forsetii KT0803 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Gramella;species:Gramella forsetii; 7.62392421 7.934494965 7.887049913 7.038940692 7.611482045 7.799874511 7.657585432 7.599637469 222447756 fnr Stress Oxygen stress Chloroflexus sp. Y-400-fl 7.324732519 7.572870744 7.780164842 7.678084793 7.317653982 7.826102573 7.431099652 7.105581385 7.339168081 220706851 nagI Organic Remediation Aromatics Aromatic carboxylic acid Geobacillus sp. Y412MC61 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.21418231 8.316900654 7.813147455 7.495451859 7.461707589 7.794882371 7.615159516 8.235603836 7.921666428 7.181909336 7.646034192 126736565 fnr Stress Oxygen stress Roseobacter sp. CCS2 7.412719072 7.444775115 7.75207963 7.51409146 7.438524768 224600581 gyrB other category gyrB Lutiella nitroferrum 2002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Lutiella;species:Lutiella nitroferrum; 7.542058058 7.810761658 7.498430684 7.492042094 7.766819329 7.407071445 7.598249504 7.849717042 119952652 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 7.481065407 7.784496919 8.16458641 8.255133306 8.007000115 8.392957587 7.939284483 7.962179828 8.193351505 511302 exoglucanase Carbon cycling Carbon degradation Cellulose Phanerochaete chrysosporium superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 8.039035522 7.949549832 7.576689643 7.581196447 7.922732419 7.324504304 7.437690723 7.902839745 7.272959281 7.841516791 7.358621116 254394495 ABC_antibiotic_transporter Antibiotic resistance transporter Streptomyces pristinaespiralis ATCC 25486 7.623895291 7.170778111 8.260768525 7.688473434 8.003720422 7.810155075 52207945 nagG Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas sp. CHY-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 7.92075985 7.918187528 7.678706381 7.781759036 8.27961311 8.149782618 8.210305538 7.821108674 7.993449973 115259785 ALN Organic Remediation Others Rhizobium leguminosarum bv. viciae 3841 7.759262579 7.599090814 7.519819704 7.648909339 8.089345169 7.849835805 7.528393609 7.768784666 227840047 pstB Stress Phosphate limitation Oribacterium sinus F0268 7.164123192 7.436192069 7.116448248 6.832099149 77966700 pcpE Organic Remediation Herbicides related compound Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.373727123 8.457916666 8.581244697 8.145074089 8.426368115 8.000583668 8.164947653 8.206080216 121716444 BpH Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 9.059810692 9.139251638 8.697005719 8.354018161 8.300036669 8.26169348 8.201440536 8.265681418 8.11643911 8.500752976 218234020 Tet Antibiotic resistance other Bacillus cereus B4264 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 7.086349809 7.339483026 7.073166442 6.780519029 7.536041692 7.174073656 6.851767263 258554326 clpC Stress Protein stress Nakamurella multipartita DSM 44233 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 8.201641189 8.052132583 8.071237236 7.615431792 8.382336099 8.271982929 8.405017749 8.129629709 8.119661415 118036452 pcaG Organic Remediation Aromatics Other aromatics Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8.200355477 8.278162186 8.200726034 8.155078311 8.442064619 8.279098406 8.543324429 8.421193988 7.94653768 211957184 mer Metal Resistance Mercury Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 7.046614298 7.52282355 7.67115263 7.371221626 7.579531306 7.085303857 7.285735956 7.436197913 7.296087748 145282894 ArsA Metal Resistance Arsenic Pyrobaculum arsenaticum DSM 13514 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum arsenaticum; 7.959709735 8.396001525 7.699428938 7.436450933 7.492118866 6.935124086 6.866349301 7.767487453 7.343803871 7.448017175 227236181 ahpF Stress Oxygen stress Anaerococcus lactolyticus ATCC 51172 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Anaerococcus;species:Anaerococcus lactolyticus; 8.198954473 8.200219694 9.501855075 8.233574252 8.687696307 8.146759316 8.029932551 8.299773831 3157512 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 8.165139461 7.817812239 8.028343217 7.154150894 8.049204238 7.891320478 7.918506006 8.084667249 7.452762277 256769576 ahpC Stress Oxygen stress Streptomyces sp. C superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7.858284495 8.095998057 7.339083384 8.038180297 7.942398783 8.14708366 8.004010435 7.592974919 84694094 gyrB other category gyrB Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 7.175770257 7.342764393 7.717691522 7.664500012 7.355165012 7.916272917 7.567033784 7.221992162 7.596244553 89051713 ahpF Stress Oxygen stress Photobacterium sp. SKA34 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium; 7.182098097 7.235420213 6.939958847 7.023289454 7.199237529 118592340 Arylest Organic Remediation Aromatics Other aromatics Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 8.358029341 8.42789527 8.353769155 8.00895005 8.511977038 8.456620902 8.427729937 8.410736124 256742468 oxyR Stress Oxygen stress Thiomonas intermedia K12 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas;species:Thiomonas intermedia; 8.380086307 7.971634213 8.312614454 8.407760679 8.206438901 8.225502438 8.168870814 8.074165695 114707771 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 7.78503554 7.810145795 8.049112847 7.559656649 7.747564813 7.953702089 7.455783829 7.764522467 7.354934573 256425349 sigma_24 Stress Sigma factors Chitinophaga pinensis DSM 2588 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 7.170208171 7.354584657 7.022793707 7.065889732 149783143 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.016561565 8.014333952 8.35786967 7.785955672 8.285629648 8.195468846 8.088636079 8.283877544 7.925064096 88809438 ureC Nitrogen Ammonification Synechococcus sp. WH 7805 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.298348944 8.188334316 7.965231953 7.399232784 8.190421241 7.717269905 7.832819513 7.626682469 145238728 pcpE Organic Remediation Herbicides related compound Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.313713161 7.309704213 7.39909932 6.853864936 7.408013745 7.583589999 7.495027964 7.429561816 19070843 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 7.584178124 7.445875791 7.761811926 7.45591964 7.218015131 7.90787148 7.581581709 7.397786259 7.591928062 187484180 gyrB other category gyrB Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 7.942377226 7.610735083 7.68217579 7.426145235 7.696126296 7.789672001 7.616708688 7.494219894 160884031 ChrA Metal Resistance Chromium Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 7.477875768 7.662478135 7.357920849 7.324284018 8.188328782 116613101 proO Organic Remediation Aromatics Other aromatics Arthrobacter sp. FB24 7.426881542 7.803458493 7.327979219 7.806164725 7.625717997 123978213 pstB Stress Phosphate limitation Hyperthermus butylicus DSM 5456 8.436063364 8.284064909 7.940075655 8.070488058 7.977109455 8.820272803 8.067084861 8.79706905 8.385225434 8.455081973 62195341 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Brucella abortus biovar 1 str. 9-941 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Brucella;species:Brucella abortus; 7.948656335 7.88590498 7.677222348 7.72113459 7.772817392 7.813078721 7.81216064 7.616292425 7.754487672 83646718 narG Nitrogen Denitrification Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 8.068821635 7.979031501 7.15215868 7.143447523 7.081793394 6.841936225 7.80477252 7.106682873 7.190659353 29466028 norB Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.327350639 8.099193029 7.930354831 7.90069657 7.863194458 8.109270324 8.216427378 8.343014075 8.346592594 7.951803347 7.901597679 197116970 sigma_32 Stress Sigma factors Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 8.487394186 8.207689643 7.773585144 8.061459425 8.400788504 7.8519925 8.091459232 8.268830828 8.19735436 8.489049331 7.866711068 118464430 bphA Organic Remediation Aromatics Polycyclic aromatics Mycobacterium avium 104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 7.275288441 7.38112202 7.619278286 6.952931032 163815580 sigma_70 Stress Sigma factors Coprococcus eutactus ATCC 27759 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Coprococcus;species:Coprococcus eutactus; 8.186571009 8.471531786 7.569198121 7.368297242 7.589336226 6.98000714 7.643275965 7.30249478 6.934491221 7.483119424 2645004 dnaK Stress Heat shock Planctomyces maris 8.079952282 8.017846617 7.937524413 7.643637946 7.366370333 7.71426046 7.73179568 8.128770955 7.728213126 7.351499224 7.447441945 83596382 tutFDG Organic Remediation Aromatics BTEX and related aromatics Roseburia inulinivorans superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia; 7.534742217 7.349710448 7.396755056 6.695406685 6.801177044 7.61026753 7.043812676 6.93777903 7.289125842 112463779 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.329048364 8.395703501 8.601571772 8.642348104 8.965712317 8.407448497 8.645459178 8.52722232 8.872513493 8.990324609 8.330661713 179345299 CopA Metal Resistance Copper Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 8.272565005 8.550985654 7.977104925 7.899644386 8.396263809 8.527450822 8.291680987 8.545804129 8.233815843 8.362702131 8.342706157 68241374 amyA Carbon cycling Carbon degradation Starch Prosthecochloris aestuarii DSM 271 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Prosthecochloris;species:Prosthecochloris aestuarii; 7.46973913 7.529727747 7.729662637 7.205125888 7.547041156 7.642779359 7.445231717 7.336625519 7.548046128 239815431 pilin virulence pilin Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 7.534536362 7.666814548 7.851631342 7.528243919 7.193872827 91782106 fnr Stress Oxygen stress Burkholderia xenovorans LB400 7.302941885 7.394654667 7.487325541 7.16072896 7.23331453 7.763412815 7.582461973 7.292607398 7.313435264 195364371 bphA Organic Remediation Aromatics Polycyclic aromatics Mycobacterium vanbaalenii PYR-1 7.933288147 8.199483248 7.593619338 7.530592431 7.257126872 7.512087498 7.799509069 7.607279345 7.411790405 7.262165744 78060235 chnB Organic Remediation Other Hydrocarbons Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.174834523 7.082829118 7.324713381 7.230222537 7.46002701 90417154 pimF Organic Remediation Aromatics Aromatic carboxylic acid marine gamma proteobacterium HTCC2207 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.754583822 7.910312383 7.175423285 6.833099384 7.580760797 6.929299613 7.347141126 35213585 Al Metal Resistance Aluminum Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 7.924197169 8.574746616 8.039218435 7.713276091 7.619084146 7.48914939 7.37964096 7.759696739 7.534928065 7.823923017 261868891 mannanase Carbon cycling Carbon degradation Hemicellulose Flammeovirga yaeyamensis superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Flammeovirgaceae;genus:Flammeovirga; 7.639226361 7.41653304 7.278446596 6.742304841 7.213663319 7.40760844 7.390284707 7.536430428 7.030005917 218518900 sigma_38 Stress Sigma factors Acidithiobacillus ferrooxidans ATCC 23270 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 7.555252712 8.183615901 7.879196309 7.942947414 7.957726326 8.313562047 7.817725039 7.673007951 8.051795498 218751030 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.288117151 7.510898665 7.687741089 7.600194439 7.174177353 7.88252683 7.163842958 7.402396979 7.911794348 118737323 CopA Metal Resistance Copper Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 7.884952202 8.032270056 7.838265347 7.698306418 8.226318293 8.208814793 8.13596783 7.636719074 7.81802562 255345840 B_lactamase_C Antibiotic resistance Beta-lactamases Pedobacter heparinus DSM 2366 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter;species:Pedobacter heparinus; 7.195591143 6.80105557 7.044694939 6.751352946 7.33376307 7.144172542 6.924168479 7.194501559 53687742 xylanase Carbon cycling Carbon degradation Hemicellulose Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 8.187727075 8.113116948 7.501752441 7.729410566 7.479771847 7.173292755 7.237332275 7.686582429 7.575373674 7.521388584 7.634435591 254969751 phoB Stress Phosphate limitation Acidithiobacillus caldus ATCC 51756 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 8.062858297 8.276841948 7.892874182 7.617105374 7.513707441 7.433277307 7.835459534 7.766999035 7.614647588 8.06582031 182415051 ara Carbon cycling Carbon degradation Hemicellulose Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 8.185705465 8.01677224 7.367799986 7.477583963 7.853897779 7.9780319 7.522060841 7.652614027 7.753503327 7.946730902 169742873 dsrA Sulphur sulfite reductase uncultured Desulfovibrio sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 8.25000596 8.061983749 7.843126757 8.046989463 7.952141723 8.035534719 7.936458905 8.181296548 8.208383087 8.080643208 7.783861102 196226733 pstB Stress Phosphate limitation Chthoniobacter flavus Ellin428 9.892399999 10.12730348 10.02095543 9.506543779 9.407213863 213876498 pilin virulence pilin Vibrio vulnificus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.150210579 8.103818473 7.711915618 7.763527278 7.587453146 7.728303729 7.849060701 8.005576291 7.778043929 7.961914703 118467006 proO Organic Remediation Aromatics Other aromatics Mycobacterium avium 104 10.13294509 9.785060766 9.305821132 9.080408393 9.374892264 167617262 nmoA Organic Remediation Aromatics Nitoaromatics Burkholderia thailandensis Bt4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 7.646022721 7.763883327 7.649309052 7.849710122 7.719915369 8.002922943 7.56017004 7.967434017 7.869743312 167836982 atzB Organic Remediation Herbicides related compound Burkholderia thailandensis MSMB43 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 7.762576591 8.197804312 7.925116416 7.95479864 7.585169404 7.697265397 7.711914833 8.221953526 7.862293175 7.686973784 7.782815693 157375149 hly virulence hemolysin Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 8.170894421 8.529494223 7.926175493 7.72815164 7.677931884 7.503904943 7.47027506 8.011234042 7.444820946 7.396749664 7.852795183 189338579 ArsC Metal Resistance Arsenic Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 7.635678678 7.448995157 7.412814933 7.314146333 7.627825048 8.294941037 7.692840961 7.472334812 7.740179425 39578209 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.959402897 8.217166452 7.612726125 7.283610402 7.511620127 7.355676935 7.649723285 8.077022263 7.675835711 7.506545076 7.508555861 83855146 gyrB other category gyrB Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 7.17622788 7.414060658 7.368188967 7.583006416 161318461 BMO Organic Remediation Other Hydrocarbons Pseudomonas butanovora superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 7.386855129 7.094902647 7.418400691 7.42072608 7.121094477 7.998863679 7.016478394 7.371424486 45200841 katE Stress Oxygen stress Ashbya gossypii ATCC 10895 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Eremothecium;species:Eremothecium gossypii; 8.078297877 8.37405559 8.122438455 7.863477048 7.790303867 7.526392179 7.721354053 8.067979129 8.050289511 7.81511386 7.817195028 62085682 gyrB other category gyrB Gordonia desulfuricans superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 8.827310935 8.763347322 8.112530119 8.042704249 8.603298271 8.823661011 8.327145926 8.837836718 8.25190169 8.440552536 8.397976648 108755446 gyrB other category gyrB Segniliparus rotundus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Segniliparaceae;genus:Segniliparus; 8.005171756 7.897517326 7.895038082 7.676532131 7.326748234 7.265790865 7.911943078 7.77468747 7.601538889 7.547653183 7.613897305 171277902 CopA Metal Resistance Copper Bifidobacterium dentium ATCC 27678 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium dentium; 7.961913686 7.853147949 7.553507126 7.510370643 7.234759897 7.216256545 95116487 bphA Organic Remediation Aromatics Polycyclic aromatics Cycloclasticus sp. P1 7.455526938 7.217908325 7.356457699 7.026502924 7.520526185 7.047735744 7.168857607 7.530337972 114189098 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.678328431 7.68580796 7.411818214 7.375620575 7.964874976 7.948500488 8.11130441 7.859035819 7.677341711 169629592 fnr Stress Oxygen stress Mycobacterium abscessus 7.969081169 7.906521394 7.424656577 7.995496499 8.037457697 8.098956726 7.901278479 8.225479958 7.663679795 7.586116503 7.9711057 83972386 nosZ Nitrogen Denitrification uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 7.777662819 7.681947624 7.487218321 7.393930979 7.428664567 7.901511673 7.238886589 7.405905354 7.539395208 116061983 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.174251326 8.355513268 8.212334356 7.932620635 7.845098003 8.00607256 8.328325802 8.250527199 8.156492703 7.79295181 8.178831576 148371199 phn Organic Remediation Herbicides related compound Brucella ovis ATCC 25840 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Brucella;species:Brucella ovis; 7.23268157 6.9734804 6.964416209 6.940968304 7.560373006 7.180538115 7.286067504 268610742 sigma_70 Stress Sigma factors Ruminococcus flavefaciens FD-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus flavefaciens; 7.980553679 7.931111995 7.704139353 7.849093803 7.595987038 8.03519218 7.555443149 7.526165968 7.177308986 82410046 silC Metal Resistance Silver Nitrosospira multiformis ATCC 25196 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira;species:Nitrosospira multiformis; 7.809074462 8.211276449 8.226413915 8.311700971 8.712815704 8.196472107 8.563469712 8.278097432 8.326885045 89084285 glnR Stress Nitrogen limitation Bacillus sp. NRRL B-14911 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.907057733 8.24718998 7.75302907 7.556644518 7.525182726 7.436015348 7.435912927 7.758291459 7.467397456 7.435768185 7.652003737 198283113 fnr Stress Oxygen stress Acidithiobacillus ferrooxidans ATCC 53993 7.310629994 7.835338418 7.941284631 7.35708186 7.41858956 7.403000646 7.781497745 149188732 atzB Organic Remediation Herbicides related compound Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 8.49177002 8.13202842 7.516199964 7.719433383 8.134917226 8.102205876 7.780088498 8.062893046 7.972058313 8.283386672 3413163 bphA Organic Remediation Aromatics Polycyclic aromatics Burkholderia sp. JB1 7.795606026 7.899693719 7.911140893 7.555396176 7.815651988 8.31639563 7.914362858 8.054371041 8.272778171 145588192 gyrB other category gyrB Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 7.339709962 7.497648534 7.210145222 7.513768018 7.793381987 7.449849869 7.36868442 7.54377934 222150157 obgE Stress Radiation stress Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 8.243337029 7.799880942 7.709005939 7.734594622 7.613501935 183207934 TerC Metal Resistance Tellurium Acinetobacter baumannii ACICU superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 7.034291447 7.091495135 26986066 sox Sulphur Sulphur oxidation Marinobacter sp. HY-106 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 7.402049926 7.425549132 7.761060182 8.100725066 7.425035022 7.557355247 7.536382957 7.227832425 225874233 sigma_24 Stress Sigma factors Acidobacterium capsulatum ATCC 51196 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteria;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 8.371216902 8.427719555 8.409488531 7.643619037 8.229356987 7.891660628 8.307202085 8.133835098 8.280078546 56068762 ZntA Metal Resistance Zinc Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.038577677 8.194608876 7.904717819 7.844130507 8.264811127 7.569354518 8.364713075 8.147328612 8.205474773 7.825505669 4204214 exoglucanase Carbon cycling Carbon degradation Cellulose Humicola grisea var. thermoidea superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;genus:Humicola;species:Humicola grisea; 7.820181869 7.861175335 7.636536836 7.824384173 7.838333329 7.906112653 8.001853127 7.881948088 7.862497345 206679577 pmdAB Organic Remediation Aromatics Others Rhodobacterales bacterium HTCC2083 8.152840234 8.08526311 7.890980933 8.252841375 8.114050999 8.040822857 8.111059109 8.164994776 7.545374194 7.837607983 8.066798625 118687762 HBH Organic Remediation Aromatics BTEX and related aromatics Marinomonas sp. MWYL1 7.540299595 7.286751858 7.225928185 7.207504327 7.082522727 7.723142713 7.219622697 7.442814008 146328853 gyrB other category gyrB Dichelobacter nodosus VCS1703A 7.290734978 7.626741004 7.24367223 7.096040667 7.049745326 8.061572806 7.738965191 7.446560235 7.580533975 148474694 nrfA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.968104477 7.955800518 7.981387321 7.243583498 7.763894898 7.669295039 7.798569862 8.0663376 7.551715633 116697110 sigma_24 Stress Sigma factors Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 7.581663165 7.796293413 7.619245803 7.666413358 7.751233432 7.41513082 7.888978447 7.981132946 8.288000288 255060304 ahpC Stress Oxygen stress Geobacter sp. M18 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.278578675 8.468297129 8.058271397 7.837887615 7.853823567 7.984609394 7.994048077 8.049220891 7.852304716 7.880691531 121552055 atzC Organic Remediation Herbicides related compound Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 8.284599049 8.325021353 7.904262985 7.582955523 7.785885317 7.647742358 7.909892679 7.856492263 7.494236027 7.901913142 56963827 atzA Organic Remediation Herbicides related compound Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 8.155026356 8.168670908 7.746606184 7.880821291 8.17040404 8.371525082 8.387812789 8.268617814 8.208941072 7.978993027 7.934847618 68159573 gyrB other category gyrB Clostridium asparagiforme superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 7.72582659 8.037776514 7.234491209 7.215166548 7.042352072 6.97753469 7.356810291 251837502 pstB Stress Phosphate limitation Bacteroides sp. 1_1_6 7.293668058 7.380636791 7.210411021 7.525752081 255342675 SMR_antibiotics Antibiotic resistance transporter Flavobacteriaceae bacterium 3519-10 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae; 8.328526284 8.609079737 8.148887441 8.164912006 7.772787425 8.059585929 8.393677841 8.366275259 8.216878059 7.976726274 8.477694416 39995472 cytochrome Energy process Energy process Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 8.215316035 8.506413989 7.81107921 7.779562182 7.577389007 7.532174109 8.220473654 7.952565534 7.758039673 8.057453455 37524236 pstA Stress Phosphate limitation Photorhabdus luminescens subsp. laumondii TTO1 7.438077701 7.132918035 7.146526577 6.837035793 6.707963964 7.610188564 82943636 oxdB Organic Remediation Aromatics Nitoaromatics Gibberella zeae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella; 8.372753977 8.606797005 7.540468637 7.79489555 7.649309239 7.634334577 7.04133086 8.121322447 7.43315895 7.471822233 7.862364907 238694959 Host_recognition_T2_type Bacteria phage HOST RECOGNITION/STRUCTURAL Enterobacteria phage JSE order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 8.317985919 8.558019012 7.858999771 8.159623521 7.897344228 7.029806448 7.563319745 7.976455719 7.697327948 7.861107441 113528994 pheA Organic Remediation Aromatics Other aromatics Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 7.897589327 7.746867103 7.445345985 7.37508306 7.841747564 8.103351266 7.433363268 7.47989168 7.549876328 150029546 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 7.982745184 8.144224685 7.685959909 7.575409532 7.514196576 7.333712639 7.662230568 7.77874349 7.834536738 7.449114699 7.524827054 162451553 norB Nitrogen Denitrification Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 8.210654105 8.225781763 8.213182743 8.324787121 7.941171083 8.019166154 8.084509291 8.093084401 8.053727093 8.132050836 8.048732533 161579566 pimF Organic Remediation Aromatics Aromatic carboxylic acid Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 7.889581495 8.171926905 6.908182939 6.97945112 7.230601861 218751010 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.315831743 7.425563206 7.064977749 6.951912587 7.589476988 121711906 iro virulence Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7.671794138 7.740010418 7.819618036 8.273979229 7.925470913 8.299087781 7.832950871 7.879719491 7.949712698 94422107 AceB Carbon cycling Carbon degradation others Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 7.131178616 7.054068819 7.112853698 6.675979705 7.353284776 7.08124603 7.389161424 62484838 pimF Organic Remediation Aromatics Aromatic carboxylic acid uncultured bacterium superkingdom:Bacteria; 8.352040236 8.342543695 8.31515735 7.777911752 8.420016782 7.923972973 8.126700819 8.220496825 8.476534005 145575814 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 8.015187974 7.838605338 8.306393442 8.27777959 8.737798611 8.099820129 8.452373866 8.584693025 7.682217218 28316326 katE Stress Oxygen stress Aspergillus oryzae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 8.87146695 8.803385469 7.97051669 8.266970957 8.792233677 9.096508956 8.463199206 8.95003708 8.484674687 8.498378387 8.701646913 186475782 Arylest Organic Remediation Aromatics Other aromatics Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.600511227 7.833693076 7.914494829 7.968991981 8.057755025 197122674 sigma_32 Stress Sigma factors Anaeromyxobacter sp. K superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 8.006580523 8.121357093 8.129984934 8.456777966 8.774597584 8.514694661 8.660961188 8.316326529 119958313 narI Stress Oxygen limitation Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 7.294491976 7.304602358 7.921593332 7.913897668 7.452441658 8.122617182 7.253301469 7.162090447 7.481005827 119713596 sigma_24 Stress Sigma factors uncultured marine bacterium EB0_39H12 superkingdom:Bacteria; 6.844009639 7.1741314 7.214379857 7.525630665 7.17170649 7.408322888 150036124 sox Sulphur Sulphur oxidation Halochromatium glycolicum superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Halochromatium; 8.210149071 8.163984269 8.163355751 8.18191811 7.971522486 7.843143536 8.18318579 8.215369585 8.222953633 8.156260221 8.037812101 145223482 TehB Metal Resistance Tellurium Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.275701087 8.154236299 8.11644499 8.163146357 7.887388114 8.011283253 7.963652002 8.035700995 8.311411646 8.201174122 8.102759366 156858357 pstS Stress Phosphate limitation Bacteroides uniformis ATCC 8492 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides uniformis; 7.798759604 7.826747515 7.505301373 7.922118459 8.177261867 8.031478299 7.480469171 8.064700549 225208959 ppk Phosphorus Phosphorus utilization Coprococcus comes ATCC 27758 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Coprococcus;species:Coprococcus comes; 8.00872321 7.649920369 7.717436203 7.644643895 7.772966864 7.949755693 7.841745052 7.681774179 7.691170614 113867879 SMR_antibiotics Antibiotic resistance transporter Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.226327673 8.248287118 7.946904027 8.422919203 8.200927048 8.273037223 8.418834417 8.580841687 7.892411112 150036114 sox Sulphur Sulphur oxidation Thiothrix nivea superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Thiothrix; 7.977056184 8.224268102 7.87083797 7.646620455 7.656611416 7.284149669 7.681633699 7.87205474 7.726612067 7.753140293 7.818140329 224824616 AceB Carbon cycling Carbon degradation others Lutiella nitroferrum 2002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Lutiella;species:Lutiella nitroferrum; 7.977148927 8.003334162 8.167374746 8.300006297 7.950692657 7.923460241 8.404988093 8.179272225 8.410613472 8.083600102 7.920926092 111034973 dsrB Sulphur sulfite reductase Desulfatibacillus olefinivorans superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatiferula; 8.450980537 8.43571987 7.827979846 7.685279887 7.823102073 7.04402057 6.824008243 7.529774276 7.58624071 7.802373645 229381948 cap virulence capsule Mollicutes bacterium D7 superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes; 7.43173344 7.461054594 7.16348794 7.455040194 7.805031403 7.206019197 9630407 non_contractile_major_tail_protein Bacteria phage STRUCTURAL Mycobacterium phage D29 order:Caudovirales;family:Siphoviridae;genus:L5-like viruses; 8.650739103 8.779786413 8.673949911 8.638534376 8.504881427 8.678963773 8.985558838 8.600550555 8.900223416 8.663003973 8.612261874 260364497 AceA Carbon cycling Carbon degradation others Vibrio parahaemolyticus K5030 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.516896477 7.501476382 6.987020133 6.905992628 7.348837113 7.280954373 71467679 amyA Carbon cycling Carbon degradation Starch Haloarcula hispanica superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula; 8.151321694 8.043436482 7.558337791 7.57548711 7.469667277 7.248778909 6.979323884 7.48278381 7.194503611 7.595386868 221203702 akbF Organic Remediation Aromatics BTEX and related aromatics Burkholderia multivorans CGD2 7.790688834 7.462511409 7.587879813 7.653405207 8.104855209 8.232093732 8.184798202 8.079906062 8.213566107 87280984 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.622290502 7.303011248 7.425631126 7.37284514 6.901163979 7.61996565 7.281719278 7.323210418 189349534 pilin virulence pilin Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 8.224828603 8.318129539 157374437 sigma_38 Stress Sigma factors Shewanella sediminis HAW-EB3 7.094602989 6.999996573 7.366864627 6.92829094 7.54980191 7.186150761 7.379579098 221564393 pstB Stress Phosphate limitation Geobacter sp. FRC-32 7.252512039 7.103099449 6.902102509 239521881 obgE Stress Radiation stress Clostridiales bacterium 1_7_47_FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales; 7.293654371 6.964123401 7.375455447 6.631050134 7.440292803 6.961529107 6.915616521 118655850 CopA Metal Resistance Copper Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 7.796300152 8.030627708 8.258582572 8.228183509 8.025499115 8.051085184 8.194930035 8.409448435 8.116069031 91225856 CopA Metal Resistance Copper Vibrio alginolyticus 12G01 7.086735133 7.310864879 7.318326543 238726061 katE Stress Oxygen stress Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 7.089810009 7.258432815 7.110610509 7.126218581 219994303 pstC Stress Phosphate limitation Halothermothrix orenii H 168 7.572180678 7.246490962 7.361362131 6.9307386 6.919686902 7.410418079 7.198965731 7.053122629 7.354125866 94314029 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.140400523 8.392222934 8.18691984 8.16922655 8.014645421 8.146496041 8.443910276 8.390426251 8.440851435 8.383827884 8.151660924 29366756 major_capsid_protein Bacteria phage STRUCTURAL Streptomyces phage phiBT1 order:Caudovirales;family:Siphoviridae;genus:PhiC31-like viruses; 7.233083722 7.491150207 7.624994682 7.386749348 7.290816938 7.509421141 7.243577022 7.46827127 7.342707372 30249711 pilin virulence pilin Nitrosomonas europaea ATCC 19718 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas europaea; 8.568904249 8.885068744 8.330680136 8.286486011 8.158925224 8.011070549 7.912758507 8.294501324 8.101321085 8.01498012 8.191848173 21674306 hrcA Stress Heat shock Chlorobium tepidum TLS superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 8.000447896 8.289051752 7.413287153 8.21175278 7.822371674 7.317455057 7.481756488 7.90803899 7.627048545 7.820653274 7.371387979 158437481 nifH Nitrogen Nitrogen fixation Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 7.649169668 7.586686063 7.595200626 7.392213416 7.72591055 7.835991793 7.907360808 7.595892802 7.830361947 114326688 hrcA Stress Heat shock Granulibacter bethesdensis CGDNIH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 7.935703146 8.320175164 8.069809871 8.572275078 8.329395261 8.415064964 8.612550523 8.166352774 32350556 holin_type_3 Bacteria phage LYSIS Enterobacteria phage RB69 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.84732865 8.295240252 7.302824774 7.377743627 7.305852454 6.912336818 6.95091626 7.629571514 6.924321702 7.268180578 29652508 narG Nitrogen Denitrification uncultured bacterium 8.233776195 8.552746645 7.601014387 7.594335545 7.826497218 8.008906521 7.649619539 8.06127853 7.825990254 7.771252096 7.918566709 224019793 sigma_24 Stress Sigma factors Bacteroides coprophilus DSM 18228 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides coprophilus; 6.899946647 7.052271354 99038261 sigma_70 Stress Sigma factors Ruegeria sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.363770211 7.597989607 7.418975556 7.120127804 7.52547302 119956052 chnB Organic Remediation Other Hydrocarbons Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 7.436574431 7.700563722 8.126136852 7.30459409 7.869563787 7.171184822 7.64714196 15827924 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium leprae TN superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium leprae; 8.078142248 8.169518562 8.08255428 7.964808422 8.427629059 7.887249329 8.104728356 8.274779448 7.985822897 76056947 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.648217086 7.62390023 7.48450499 7.746916378 7.171057223 7.349856012 7.416102943 7.443543429 167774254 gyrB other category gyrB Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira biflexa; 7.943988622 8.257521415 7.248123272 7.287521841 7.310621421 6.94157266 7.192150742 7.399517448 225905991 dsrB Sulphur sulfite reductase uncultured prokaryote 8.480878382 8.085186878 8.619511878 8.5501489 8.683059794 8.130950762 8.593669654 8.258705274 8.473388619 8.476566353 7.952908151 33866957 sigma_70 Stress Sigma factors Synechococcus sp. WH 8102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.113146126 8.175973295 7.56784952 7.982634113 8.028389348 8.071132847 7.728353264 7.835140625 7.551232423 7.969052259 7.917225548 149377750 gyrB other category gyrB Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 8.299904761 8.417883402 7.971569569 7.64019956 8.324480732 8.255815553 8.126412045 8.074519458 8.198280648 91975502 CODH Carbon cycling Carbon fixation Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.073992041 7.899278715 7.266766937 7.521433479 7.306477598 7.18203496 7.427916693 7.628663405 7.667805802 7.135485129 7.625754868 124485936 pstB Stress Phosphate limitation Methanocorpusculum labreanum Z 8.218090139 8.348307765 8.088505229 8.086201029 8.351067975 8.170045573 8.369190302 8.299604787 8.068865552 126196997 fnr Stress Oxygen stress Pseudomonas aeruginosa 2192 7.356970514 7.539021647 218533561 sigma_24 Stress Sigma factors Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 9.104053855 9.215146289 8.745569481 8.703502924 8.786490589 8.73208554 8.95530546 8.68295496 8.91134207 8.835830459 8.842779447 206679504 ppx Phosphorus Phosphorus utilization Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.268815935 7.485633353 7.50053076 7.42723361 7.420663076 7.484522023 7.38630694 7.792904937 163669352 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 8.381555106 8.619251336 8.537831075 8.057480158 8.649791628 7.992070235 8.238373582 8.505932517 8.399608305 187606294 amyA Carbon cycling Carbon degradation Starch Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 8.191137245 8.439092824 3378446 akbF Organic Remediation Aromatics BTEX and related aromatics Novosphingobium aromaticivorans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 7.930813986 8.039282783 7.829967788 7.757465971 7.887177733 8.085304293 8.128013376 8.228904272 7.659390457 146313109 sigma_70 Stress Sigma factors Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 7.807879205 7.971671142 7.646327629 7.588175444 8.157072249 7.764824081 7.73525341 7.56692876 7.382772632 118702004 mauAB Organic Remediation Herbicides related compound Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.226196184 8.005482018 8.116235961 7.833067085 8.175678314 8.162333994 8.143831807 8.527501069 7.907383131 158138891 narG Nitrogen Denitrification uncultured bacterium 7.693243766 7.613793898 7.936398898 7.932066899 7.578813945 7.74489466 7.64864627 7.593323148 7.954968652 225594854 DNA_polymerase_type_I Bacteria phage REPLICATION Pseudomonas phage phikF77 order:Caudovirales;family:Podoviridae;genus:phiKMV-like viruses; 7.394677985 7.300013761 7.09423486 7.040381136 6.957854387 7.163169462 7.499624883 7.351624673 56476514 BadI Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 6.895455835 7.107182339 6.796714133 7.074548612 6.972927266 84382832 ZntA Metal Resistance Zinc Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 8.047673787 8.291101597 7.132019972 7.559421554 8.138923684 7.339209166 126736229 alkB Organic Remediation Other Hydrocarbons Roseobacter sp. CCS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.815913713 7.751652915 7.850284772 7.508169593 7.615775743 7.99740149 7.583789975 7.59334557 7.867352778 76557465 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Natronomonas pharaonis DSM 2160 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natronomonas;species:Natronomonas pharaonis; 7.374646355 7.989178261 8.079595419 8.37425424 7.311433679 7.633481254 7.944739927 7.922578257 260613673 nplT Carbon cycling Carbon degradation Starch Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 8.241701531 8.486759324 7.504341542 7.700597537 7.915545929 7.839554152 7.026545923 7.845857384 7.352181118 7.669487101 7.471966101 119956713 linB Organic Remediation Pesticides related compound Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 7.872386811 7.970075485 7.171418423 7.347397697 7.307677476 6.619147927 6.912057816 7.277992883 7.6847821 258622118 hly virulence hemolysin Vibrio mimicus VM573 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 7.861213017 7.933293908 7.298613278 7.702884356 7.506398698 7.494868924 7.348660556 7.933052869 7.708599497 7.877924596 7.70407437 237846109 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.327520284 7.242359996 7.424402004 7.070733808 7.627991682 7.619387734 7.244792382 7.493681547 187775046 Arylest Organic Remediation Aromatics Other aromatics Clostridium sporogenes ATCC 15579 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium sporogenes; 8.121751996 7.977192914 7.658731552 7.345216606 7.504276722 7.226503915 7.667399812 7.22517202 7.143603713 167034659 pcc Carbon cycling Carbon fixation Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.237760097 8.550722441 8.324060745 8.403364733 8.246099501 7.997763547 8.728721612 8.084454173 8.50726891 8.353751661 8.463368346 152957979 mauAB Organic Remediation Herbicides related compound uncultured bacterium superkingdom:Bacteria; 8.523676893 8.471989316 8.227964479 8.226187809 7.986547727 8.186879 8.838141736 8.452125835 8.704869306 8.325549853 8.748490158 77962972 xylA Carbon cycling Carbon degradation Hemicellulose Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 7.921289664 7.708760409 7.707897915 7.517994694 7.621095339 7.563113009 7.725269798 7.824826361 218224807 sigma_24 Stress Sigma factors Parabacteroides johnsonii DSM 18315 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides johnsonii; 7.379874021 7.816986125 7.597433957 7.366492205 7.788430864 7.863154595 7.76074318 7.333879114 7.921464969 254449365 hly virulence hemolysin gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.9069176 7.708612857 7.897440388 7.523839874 8.358461449 8.210004285 8.196578957 8.336751503 153094079 merT Metal Resistance Mercury Mannheimia haemolytica PHL213 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Mannheimia;species:Mannheimia haemolytica; 8.055026765 8.172683919 7.564198798 7.506360974 7.834791094 7.345712692 7.253984385 7.318536115 209401596 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.099271811 8.3429146 8.291694478 8.264045955 8.877402884 8.420900183 8.636306056 8.392544563 8.546429656 167760833 fnr Stress Oxygen stress Clostridium scindens ATCC 35704 7.321141144 7.848287317 7.420271049 7.268029462 7.360899475 7.7664336 7.489875012 7.237689999 7.574964491 118465791 nmoA Organic Remediation Aromatics Nitoaromatics Mycobacterium avium 104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 8.240802252 8.316083948 8.46071351 8.596793751 8.42933693 8.973196117 8.660860634 8.852060323 8.478240552 8.430071615 1771343 napA Nitrogen Dissimilatory N reduction Moraxella sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Moraxella; 7.647724664 7.711734566 7.433310088 7.537167503 7.450544615 7.893840838 7.767210885 7.102536654 7.643824922 161388077 AceB Carbon cycling Carbon degradation others Phaeobacter gallaeciensis BS107 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 8.128497942 7.941922058 7.912144649 8.057248448 8.003731962 8.240090729 7.951246585 7.807210814 7.851410295 148259585 glycosyl_transferase_EPS Bioleaching EPS Acidiphilium cryptum JF-5 8.127511574 7.641537249 7.965442721 8.182612761 8.215814665 7.919754035 7.961710674 7.736579316 207742995 pnbA Organic Remediation Aromatics Nitoaromatics Ralstonia solanacearum IPO1609 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 7.800190517 7.599273146 7.598514669 7.410328999 8.084347611 7.813511665 7.810857632 8.036118643 8.05624914 46138195 nagG Organic Remediation Aromatics Aromatic carboxylic acid Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 8.064081442 7.921255536 7.528205593 7.4004836 7.250604176 7.008299136 6.916068845 7.474324705 7.212378814 7.493697398 7.247854677 221067009 pilin virulence pilin Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.416730562 8.084640369 7.654304294 7.591228907 7.789123493 7.668052884 7.638544706 7.85870339 7.664292273 7.7387449 7.611649345 150964443 pcpE Organic Remediation Herbicides related compound Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 7.404134655 7.718182816 7.903736994 7.923038274 7.80318167 7.962022188 7.455177569 7.719194074 7.620130108 208605080 hzo Nitrogen Anammox Nitrosomonas sp. Nm143 8.165578575 8.393138581 6.945520144 7.385444803 7.601189893 8.222592786 7.513204477 8.083283991 7.712960094 7.345845174 7.690222729 71847117 gyrB other category gyrB Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 8.273311128 8.291825295 8.337565948 8.397845673 8.329316303 8.027836282 8.19840373 8.546142669 8.142359618 8.061744315 8.240319493 121051228 cap virulence capsule Neisseria meningitidis Z2491 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria meningitidis; 8.272314708 8.889006757 8.077703245 8.201836457 7.897529456 7.710512255 8.388653548 8.110148579 8.309043571 8.063020788 8.236298426 217985727 mannanase Carbon cycling Carbon degradation Hemicellulose Bacteroides eggerthii DSM 20697 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides eggerthii; 7.840293553 8.098766915 6.998368279 7.062226279 7.074192926 218761883 pcc Carbon cycling Carbon fixation Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 7.434725257 7.540479773 7.482670463 7.3744586 7.74158856 3805971 amyA Carbon cycling Carbon degradation Starch Streptomyces griseus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.558690302 8.853631455 9.334256503 8.36433336 8.666498482 8.870501884 9.014546121 256670034 ABC_antibiotic_transporter Antibiotic resistance transporter Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7.837824818 8.897008141 8.90164116 9.079271777 8.648670258 8.898891961 9.171557918 8.862609217 148258447 nmoA Organic Remediation Aromatics Nitoaromatics Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.325607026 7.267892487 7.888622074 7.917904703 7.24210819 7.55679507 7.626175557 8.127612898 240265664 amoA Nitrogen Nitrification superkingdom:Bacteria; 7.386142669 7.302436525 6.987654412 124600301 pstB Stress Phosphate limitation Mycobacterium tuberculosis C 8.429645783 8.644984692 8.241133717 7.968429405 7.976366434 8.2305078 8.078699752 8.483370049 8.235813212 8.424456316 8.400225066 68345391 cydA Stress Oxygen limitation Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.607851024 8.099999304 7.816449509 7.600316418 7.858677164 8.443605979 8.188148276 8.157488603 29603985 katE Stress Oxygen stress Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 7.752136721 8.064768141 8.081826965 8.03894671 8.213353478 8.173783608 8.152383328 8.186961574 94971732 AceA Carbon cycling Carbon degradation others Acidobacteria bacterium Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 8.04624646 8.285022625 7.652465703 7.264961183 7.519322358 7.239087425 6.982346179 7.306724938 7.384799275 7.575206343 145205966 pstA Stress Phosphate limitation Chlorobium phaeovibrioides DSM 265 7.983883671 8.253144718 7.96983434 8.39296247 8.119576172 8.272269495 8.164577305 8.336494924 8.102268399 118424424 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.540893849 7.73175566 7.640040634 7.573474856 7.91249268 7.905595419 8.187588499 7.821452319 7.828453086 219676978 B_lactamase_C Antibiotic resistance Beta-lactamases gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.252557721 7.600133024 7.956643899 7.619914248 7.943710565 7.309031961 7.836010708 8.233961423 60326784 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.464959695 8.272742186 8.204600193 8.505926189 8.485813298 8.231476873 8.597818112 8.752065319 8.661417856 8.586467052 32470852 CopA Metal Resistance Copper Rhodopirellula baltica SH 1 8.138399281 8.124860934 7.500730474 7.377192956 7.574882491 7.874695552 7.119284074 8.091314232 7.24719396 7.23035954 7.428083177 256578148 katE Stress Oxygen stress Desulfomicrobium baculatum DSM 4028 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfomicrobiaceae;genus:Desulfomicrobium;species:Desulfomicrobium baculatum; 8.348849309 8.249850499 8.638260565 7.844291107 8.48868276 8.210580786 7.750224196 83652188 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Burkholderia thailandensis E264 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 7.540140102 7.945094413 7.740216306 7.533097457 7.836295124 8.155322467 7.705019989 7.218801611 7.668820015 26278886 narG Nitrogen Denitrification uncultured bacterium 8.293959264 8.902408079 7.73186989 7.778959313 7.967782436 7.881159494 8.02318918 8.234854179 7.756956059 7.736306361 7.715742433 66045590 tfdA Organic Remediation Aromatics Chlorinated aromatics Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 8.615529663 8.57845463 8.028986035 8.028124453 7.879965242 7.709702617 8.093499828 7.993976286 8.123523186 7.958533256 8.191263044 58261038 amyA Carbon cycling Carbon degradation Starch Cryptococcus neoformans var. neoformans JEC21 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Tremellomycetes;order:Tremellales;family:Tremellaceae;genus:Filobasidiella;species:Filobasidiella neoformans; 8.088471752 8.040494442 7.9921132 7.660504909 7.959720469 8.31015599 8.00905595 7.874689029 8.137570653 126731634 nahA Organic Remediation Aromatics Polycyclic aromatics Sagittula stellata E-37 8.172373517 8.369586 8.238550765 8.611719707 8.338581583 8.247106361 8.217903924 8.403808944 8.127016404 26278932 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.35866585 8.612235327 7.914072307 7.723167261 7.897851305 7.716183771 8.239000397 7.511011482 7.812505955 7.924403017 196257913 clpC Stress Protein stress Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.214848297 7.215978978 7.21354226 7.388708011 7.451889327 7.775586023 7.300163799 7.517398993 7.565064805 150400783 nifH Nitrogen Nitrogen fixation Methanococcus aeolicus Nankai-3 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanococcaceae;genus:Methanococcus;species:Methanococcus aeolicus; 8.102462666 8.320944157 7.72404955 7.415803729 7.640606448 7.351652773 7.143135006 7.823659188 7.59078902 7.540279938 7.651459913 171319158 nitA Organic Remediation Aromatics Other aromatics Burkholderia ambifaria MEX-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 7.231642391 7.188415591 7.037628646 7.371209782 163793437 ureC Nitrogen Ammonification alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 7.420751518 7.350673721 7.407949144 7.521520575 6.818765956 7.677734046 6.893897421 7.085534401 7.485606076 254981299 aclB Carbon cycling Carbon fixation Nitrosomonas sp. AL212 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 8.178706555 8.159015977 8.038633808 7.93920778 7.804482653 7.384153316 7.778767968 7.731231653 7.839556111 7.97434332 7.697217882 70732484 vip virulence virulence protein Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.204804671 7.580667782 8.089872866 8.268261878 7.892266933 8.196042129 7.847529513 7.829775207 8.044513014 153008106 pstC Stress Phosphate limitation Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 7.964545274 7.732859307 7.630101853 7.311990693 7.830902555 7.649586173 7.471277336 7.594930655 7.761568662 86158707 cytochrome Energy process Energy process Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 8.155965556 8.115815511 8.14179161 7.916140434 8.102217219 8.060924545 8.119615798 8.081452065 8.054136116 77955793 ureC Nitrogen Ammonification Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 7.410184256 7.449434414 7.425019783 7.633460826 7.497501231 7.794337057 7.972227184 8.092661884 85825489 sigma_70 Stress Sigma factors Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.228884289 8.296845668 8.181216044 7.7233547 7.86226961 8.321508084 8.650325688 8.339603039 8.294585074 8.120434442 7.928373951 116634745 narG Nitrogen Denitrification uncultured bacterium 8.379352093 8.369313469 8.318924782 8.432343641 8.219946685 8.290831272 8.664861447 8.797386006 8.218484375 8.34067445 116493638 proV Stress Osmotic stress Lactobacillus casei ATCC 334 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus casei; 7.134886804 7.505580093 7.340289139 7.064906164 7.696130297 110634296 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 7.538798457 7.335151158 7.884186211 8.032932174 7.592730493 8.008328476 7.328534722 7.45057701 7.467683219 192822595 amoA Nitrogen Nitrification superkingdom:Bacteria; 7.473654874 7.234485019 218142839 dsrA Sulphur sulfite reductase Desulfovibrio salexigens DSM 2638 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio salexigens; 8.220847234 8.300007844 8.201527209 7.28562606 7.623127634 6.984739994 7.62012687 7.749886217 7.48665696 95133720 glnA Stress Nitrogen limitation Desulfuromonas acetoxidans DSM 684 7.985186629 8.172299657 7.342748811 7.471062801 7.954415649 8.102856629 7.289986006 8.128260993 7.55366482 7.384619722 7.411976835 170027467 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 8.184876845 8.518589285 8.168980534 8.204175246 8.233841719 8.202876761 8.443507371 8.349804815 8.407866033 8.347846184 8.324957837 71847758 sigma_38 Stress Sigma factors Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 9.653599412 9.630156525 9.032477344 8.800486143 8.655218175 8.305653726 8.571732825 8.914621445 8.536314764 8.705288517 8.763421654 133738725 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Herminiimonas arsenicoxydans 9.067248423 9.094196033 8.568759003 8.538409698 8.266239194 159877224 amyA Carbon cycling Carbon degradation Starch Flavobacteriales bacterium ALC-1 7.577976295 7.191419915 198256978 hly virulence hemolysin Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 6.744214923 6.98515372 7.015095805 6.814344808 7.021192774 211582350 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 8.343162977 8.332689771 8.569051522 7.670264953 7.894981115 7.175651271 7.62094508 7.833919573 7.753916529 7.725643091 7.948533274 257780929 sigma_24 Stress Sigma factors Desulfotomaculum acetoxidans DSM 771 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum acetoxidans; 8.175045125 8.463799548 8.399862236 7.94238917 7.942497238 7.993321359 7.980677947 8.030743652 7.960024638 29160311 exoglucanase Carbon cycling Carbon degradation Cellulose Thielavia australiensis superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Thielavia; 8.089662339 8.173209704 7.606161197 7.948247887 7.758420257 7.836277949 8.36976208 7.726281294 7.724860737 167646377 ara Carbon cycling Carbon degradation Hemicellulose Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.498539065 8.215595045 8.018110256 7.942982701 8.037013811 7.726565042 8.020523937 7.890873667 8.174148021 8.015917323 8.129227308 238695183 primase Bacteria phage REPLICATION Enterobacteria phage JS10 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.03531463 7.024603561 15077475 dsrB Sulphur sulfite reductase Desulfovibrio desulfuricans subsp. desulfuricans superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 8.022753453 8.019572112 8.271664089 7.659951725 7.966181398 8.162721082 8.144367721 7.7020545 85058229 sigma_70 Stress Sigma factors Sodalis glossinidius str. 'morsitans' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Sodalis;species:Sodalis glossinidius; 8.085539658 7.874558399 8.050717902 8.079972783 7.848884422 7.838016317 7.853655473 8.003210835 7.852592605 27381009 linC Organic Remediation Pesticides related compound Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.865596415 8.026545843 8.223942868 8.036738575 7.845475577 8.192613374 7.927343009 8.232164704 7.91117816 126651341 MFS_antibiotic Antibiotic resistance transporter Bacillus sp. B14905 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.405654485 6.881627618 260773404 ahpC Stress Oxygen stress Vibrio metschnikovii CIP 69.14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio metschnikovii; 7.369081043 7.354073121 7.577566351 32475946 Mex Antibiotic resistance transporter Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 7.293685132 7.840970309 7.852594219 8.184785928 6.892968412 7.602207637 7.470437883 211905377 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.869566004 7.77765036 8.182154697 8.115543308 8.045531004 8.235653962 8.320607902 8.314677143 8.3757971 146309965 phn Organic Remediation Herbicides related compound Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 7.656937439 7.86653186 7.471174778 7.850424601 8.209144296 8.080247437 7.753185222 7.47872941 7.587231549 260417506 obgE Stress Radiation stress Silicibacter lacuscaerulensis ITI-1157 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria lacuscaerulensis; 7.321659601 7.62133819 7.516774682 6.880126876 7.231757737 7.554158735 7.480787377 7.073361342 7.315028322 42525589 sigma_70 Stress Sigma factors Treponema denticola ATCC 35405 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema denticola; 7.161570836 7.219902364 7.400039825 7.510594173 7.083091595 7.613401503 7.227450717 7.163521644 7.096463108 253998127 iro virulence Methylovorus sp. SIP3-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylovorus; 7.622826121 7.54069763 7.72160674 7.236698548 7.561026003 7.91671432 7.518362259 7.341764248 7.762063429 3378412 xylJ Organic Remediation Aromatics BTEX and related aromatics Novosphingobium aromaticivorans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 7.209249376 7.106822836 7.264713989 7.222901882 158425656 phoB Stress Phosphate limitation Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 7.977253295 7.99694249 7.134679045 7.121182172 7544050 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 7.791960151 7.919901399 7.438440038 7.414146014 7.821971635 7.834894729 7.87634918 7.524425917 7.606960917 260432572 SMR_antibiotics Antibiotic resistance transporter Silicibacter lacuscaerulensis ITI-1157 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria lacuscaerulensis; 8.014876989 7.940427359 7.447563051 7.415569752 7.602201416 7.256550394 6.974912799 7.50397067 7.352356785 7.20019759 7.335402069 93209558 dsrA Sulphur sulfite reductase Desulfomicrobium thermophilum superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfomicrobiaceae;genus:Desulfomicrobium; 7.74032816 7.456425087 8.024925273 7.75847316 8.342734357 7.119924191 7.517677151 239824628 Tet Antibiotic resistance other Ochrobactrum intermedium LMG 3301 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 7.512646039 7.156395301 7.930276463 7.954456171 7.399321641 8.035589062 7.429729107 7.776840895 7.645619906 220924366 fnr Stress Oxygen stress Methylobacterium nodulans ORS 2060 8.288492354 8.161399754 8.432457672 8.151721587 8.035702548 8.464383147 7.994281174 149122188 phn Organic Remediation Herbicides related compound Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 7.585853819 7.83144933 8.167037679 7.67592979 8.035164212 7.875118194 8.376751787 7.848981282 84043051 pcaG Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 8.062762545 8.214010032 7.947812736 8.09478682 8.298704776 8.360125529 8.478302098 8.586706978 8.390355781 8.262832259 8.24563652 170696139 MFS_antibiotic Antibiotic resistance transporter Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 8.209018697 8.491425793 7.706101843 7.67894821 8.033005313 7.627375793 7.828400674 7.853951565 7.738087929 8.209679447 118667657 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.295840279 7.4688058 7.648246365 7.097890261 7.955149469 7.430237967 7.571826189 7.694058608 124267683 grpE Stress Heat shock Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 9.136130949 8.732020724 8.695055685 8.959693724 9.09099278 9.646898712 9.305863599 9.233469156 9.349821073 9.483987736 9.560402989 49188505 merP Metal Resistance Mercury Pseudomonas alcaligenes superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.205896566 7.982543713 8.067570918 8.135180124 7.941094927 8.011513883 8.525519918 8.289448485 7.971801115 8.011088362 184191235 gyrB other category gyrB Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.080889793 7.375009305 7.104310146 6.993271439 7.195281472 7.360737239 7.194364611 227113622 MFS_antibiotic Antibiotic resistance transporter Pectobacterium carotovorum subsp. brasiliensis PBR1692 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 8.567922108 8.240728476 72119006 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.639830861 7.943794678 7.642399437 7.986584068 7.887198951 7.856632375 7.801515856 7.951054954 7.834592861 218750984 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.098044117 8.256494133 7.420676625 7.523478143 7.644406137 7.4888389 7.554626125 7.449872003 7.809894081 186472613 phn Organic Remediation Herbicides related compound Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.601124935 7.53345552 7.508667292 7.192034295 7.540141926 7.263223998 7.197839914 240172457 B_lactamase_A Antibiotic resistance Beta-lactamases Mycobacterium kansasii ATCC 12478 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 8.290295203 8.295734503 7.581351504 7.38987767 7.539665947 7.80407289 7.316501979 7.392737867 7.4072499 7.647996894 169868836 ChrA Metal Resistance Chromium Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 7.994175267 8.259006978 7.698843565 7.569479198 7.488113743 7.166956563 7.261163218 8.254231778 225041086 nplT Carbon cycling Carbon degradation Starch Clostridium asparagiforme DSM 15981 7.665246989 7.772160321 7.86687175 8.145629557 7.674755692 8.065422685 7.699059698 7.19411631 7.53987373 56416469 cspA Stress Cold shock Anaplasma marginale str. St. Maries superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales;family:Anaplasmataceae;genus:Anaplasma;species:Anaplasma marginale; 7.040629575 7.5950938 67985747 ara Carbon cycling Carbon degradation Hemicellulose Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 8.31722761 8.178002481 7.995428083 8.429634664 8.258577925 8.488204611 7.952896565 7.881519574 8.184688119 67988497 CopA Metal Resistance Copper Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 7.710061962 7.764507347 8.159783613 8.000607516 7.842400493 8.118920487 8.282174647 8.164953983 8.028330098 228989441 B_lactamase_C Antibiotic resistance Beta-lactamases Bacillus pseudomycoides DSM 12442 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pseudomycoides; 8.723603261 8.675717337 8.328201796 8.184685111 8.013770998 7.591805508 7.678659918 7.854367728 13422273 xylanase Carbon cycling Carbon degradation Hemicellulose Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 7.554269862 7.444388739 7.734144058 7.550699749 7.763774936 7.882265689 7.476369306 7.838610638 27464269 ArsC Metal Resistance Arsenic Enterobacter cloacae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 7.625366993 7.587295648 8.265394622 7.779729646 8.29755925 8.042505635 8.545895543 8.145746695 150272189 grpE Stress Heat shock Bacteroides capillosus ATCC 29799 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides capillosus; 8.343283607 8.389536603 8.403013869 8.547195633 8.032866008 8.452415112 8.909693423 8.452113678 8.517516686 8.204906272 8.589663752 240171760 AceB Carbon cycling Carbon degradation others Mycobacterium kansasii ATCC 12478 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 7.691098572 7.746337503 8.137842124 7.527445759 7.913206168 7.74875918 217977039 sigma_24 Stress Sigma factors Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 7.90046621 7.703302604 7.683942776 7.519925674 7.972904948 7.912375139 7.620790274 7.782247826 7.372517938 126730548 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 7.45550719 7.957836426 7.727887878 7.779557321 7.581445126 47076788 narI Stress Oxygen limitation Geobacillus kaustophilus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.380104078 8.210866043 8.220457648 8.586057916 8.631711966 8.690953652 9.140499019 8.499483837 8.873872723 8.920954039 8.909952107 238723059 pap virulence adhesin Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 8.789131166 8.347168201 8.113596102 8.301044479 8.299352394 8.086162099 8.370529814 8.280547418 8.239324161 8.532163842 8.589123183 145231070 ChnA Organic Remediation Other Hydrocarbons Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 6.749190962 7.044144411 7.232064161 6.666639701 7.303449591 119391547 narG Nitrogen Denitrification uncultured bacterium 7.808338571 7.636592283 7.566666013 7.581637325 7.650744682 7.31096115 7.503201388 7.6400489 156530638 SMR_antibiotics Antibiotic resistance transporter Enterobacter sakazakii ATCC BAA-894 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 8.337065441 8.35959708 7.61903284 7.502054758 7.753914716 7.65832871 7.457436433 7.683038126 7.775679923 7.698226775 7.806766708 90418216 ChrA Metal Resistance Chromium Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 8.172612419 8.279618154 7.674168558 7.805160457 8.002323035 8.067084348 7.602238868 7.830877635 7.578601281 7.458665102 7.256357443 119396000 chnB Organic Remediation Other Hydrocarbons Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7.965637388 7.972901644 7.831300654 8.482834779 8.074133604 8.550559597 8.309839782 8.138138229 110632481 type_III_secretion virulence secretion Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 8.194728647 8.283095802 7.716691528 7.854558478 8.00281368 7.301312755 7.932578028 7.80359896 7.968708142 7.897071541 7.948748122 57224214 Ni_Fe_hydrogenase Energy process Energy process Dehalococcoides ethenogenes 195 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides;species:Dehalococcoides ethenogenes; 8.064410947 8.365989178 7.594860342 7.570797072 7.563842335 7.277745234 7.567582967 7.825886406 7.664099354 7.554547166 7.740022174 158138903 narG Nitrogen Denitrification uncultured bacterium 6.807447375 7.86240659 260767129 obgE Stress Radiation stress Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 8.147349035 8.002520199 7.634751784 7.308611574 7.692654465 7.710285626 7.379942938 7.065740738 7.252390688 220711143 phoB Stress Phosphate limitation Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.403915625 7.782489951 15606338 pstB Stress Phosphate limitation Aquifex aeolicus VF5 7.573877456 7.513374429 7.565773185 7.318695268 7.078463437 7.793253186 7.329527641 7.668191614 91715426 exochitinase Carbon cycling Carbon degradation Chitin Shewanella denitrificans OS217 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella denitrificans; 8.076461507 7.480838475 7.650667997 7.988401642 7.742927342 7.918033222 7.885557952 7.6381928 212530378 nmoA Organic Remediation Aromatics Nitoaromatics Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 8.460114245 8.80642941 8.195658 8.050513488 7.827636058 7.769469297 8.099781321 7.858451179 8.095944398 18558990 nirS Nitrogen Denitrification uncultured temperate forest soil bacterium superkingdom:Bacteria; 8.366308428 8.361092857 8.095832229 8.218901663 8.585557329 8.196811457 8.475555448 8.302020023 8.21138995 8.281472049 8.035157502 169742879 dsrB Sulphur sulfite reductase Desulfovibrio sp. NY682 7.536791052 7.653885858 7.471807232 7.199981288 7.642160936 7.388073912 7.382532332 161392782 CODH Carbon cycling Carbon fixation Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 8.087128467 8.117253248 7.977791675 7.62529367 8.134100144 7.840382308 8.001258514 7.876747318 7.919926035 154686223 gyrB other category gyrB Bacillus amyloliquefaciens FZB42 7.825038869 7.889532939 7.876211776 7.49397237 7.943195052 7.921536021 7.727160949 7.692925679 7.716727361 66395814 lysin Bacteria phage LYSIS Staphylococcus phage EW order:Caudovirales;family:Siphoviridae; 6.964066316 7.23333653 238031922 phoA Stress Phosphate limitation Pichia pastoris GS115 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Pichia;species:Pichia pastoris; 7.044613256 6.871924736 227952649 nrfA Nitrogen Dissimilatory N reduction Meiothermus silvanus DSM 9946 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 7.68237224 7.971280851 8.243733044 8.474961365 7.681242873 8.466800392 7.771399129 8.047313309 7.85629332 56477433 pimF Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 7.384894088 7.678561079 7.929788178 7.858658481 7.359452253 8.046218569 7.743624422 7.72590333 7.951227526 56678636 SMR_antibiotics Antibiotic resistance transporter Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 8.697768616 8.686235995 8.321179685 8.336461805 8.255884397 8.793575371 8.725021488 8.563216364 8.715980644 8.658000322 8.394307997 186971626 pilin virulence pilin Elusimicrobium minutum Pei191 superkingdom:Bacteria;phylum:Elusimicrobia;class:Elusimicrobia;order:Elusimicrobiales;family:Elusimicrobiaceae;genus:Elusimicrobium;species:Elusimicrobium minutum; 8.054318557 8.242315196 7.354675596 7.048758228 7.346827438 7.097094956 6.712475992 7.006828856 7.631574005 32262093 sigma_70 Stress Sigma factors Helicobacter hepaticus ATCC 51449 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter hepaticus; 7.113881563 7.237476025 6.97049266 6.770794391 7.202176238 262370616 MATE_antibiotic Antibiotic resistance transporter Acinetobacter johnsonii SH046 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter johnsonii; 8.196387572 8.289176095 7.270765797 7.634212678 7.341785874 7.87422676 219679356 Arylest Organic Remediation Aromatics Other aromatics gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.139756635 7.089518549 7.257440076 6.643879114 6.849362248 7.460576548 7.038798337 7.133134344 146283888 cytochrome Energy process Energy process Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 8.044217595 8.210673568 8.098149895 8.197460663 8.36055659 8.356168303 8.555777595 8.28213097 8.186307525 114228251 ArsA Metal Resistance Arsenic Alkalilimnicola ehrlichei MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 7.7965823 8.009906345 7.906358679 7.515455247 7.778170108 7.843861788 7.945014255 7.904367658 8.287525108 157368261 pstS Stress Phosphate limitation Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 8.351275505 8.308713509 7.897386479 7.674396675 8.177090002 8.347754006 7.726045807 8.359721149 7.921035125 7.988918982 7.888624001 90416198 sigma_38 Stress Sigma factors marine gamma proteobacterium HTCC2207 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.64665746 8.297873457 7.931936073 7.389870305 7.809317666 7.41529916 7.863187177 7.757045272 7.60795819 7.837637161 28542625 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.417492277 8.406128409 8.227162652 8.515752233 8.3562674 8.193713774 8.73215825 8.272220141 8.489149771 8.426258987 8.706585665 77384673 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.862115789 7.77833679 8.048364928 7.975554515 8.20608093 8.166458638 8.171166689 8.035524448 7.919703959 229493244 obgE Stress Radiation stress Rhodococcus erythropolis SK121 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 8.270197802 8.550044122 8.10260899 7.974113602 7.779264078 7.56114247 7.79581271 7.733449082 8.094093273 7.728149377 7.725594131 146401516 cbb Bioleaching Carbon fixation Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 7.404874925 7.485341927 7.480113779 7.721895034 7.287820136 8.045523152 6.888265651 7.69030614 96771669 ureC Nitrogen Ammonification Streptomyces ambofaciens ATCC 23877 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ambofaciens; 8.850366496 8.622652915 8.145869549 8.530765309 8.426640548 8.728170515 8.196095792 8.703470246 8.407251805 8.88414526 8.57681115 168991371 ppx Phosphorus Phosphorus utilization Lysinibacillus sphaericus C3-41 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Lysinibacillus;species:Lysinibacillus sphaericus; 7.150767251 7.740870166 240866079 grpE Stress Heat shock Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.011577702 8.044164893 7.285477792 7.417222196 7.496098648 7.459904848 6.716967754 7.988242878 7.164368469 6.990184985 7.63980511 261877631 clpC Stress Protein stress Selenomonas noxia ATCC 43541 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas noxia; 7.218000395 7.829426765 7.782309201 7.89260333 7.017788637 8.177782856 7.343880897 7.440099644 7.63385086 261252149 phoB Stress Phosphate limitation Vibrio orientalis CIP 102891 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 6.964600058 7.420240982 6.847675834 7.62727915 6.94940886 7.022069475 150275048 ChrA Metal Resistance Chromium Bacteroides capillosus ATCC 29799 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides capillosus; 7.627373111 7.723450828 7.637212593 8.082510077 8.024334038 8.139109712 7.879610036 7.718848435 1354283 xylG Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Cycloclasticus; 8.559615648 8.202810036 7.711975649 7.551648231 7.835002883 7.454279264 7.709322973 7.416815138 7.597607825 7.811626456 113733341 CopA Metal Resistance Copper Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 7.982021508 8.040693115 7.995606499 7.396011416 8.020823516 7.975714606 7.672597113 7.673546134 7.971243268 124363306 grpE Stress Heat shock Methanocorpusculum labreanum Z superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanocorpusculaceae;genus:Methanocorpusculum;species:Methanocorpusculum labreanum; 7.789338683 7.468962743 7.717119282 7.377786312 7.562747293 110818263 nmoA Organic Remediation Aromatics Nitoaromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7.142307239 7.557642546 7.361866512 7.020257358 7.369891972 7.433866639 7.599967765 119378304 nmoA Organic Remediation Aromatics Nitoaromatics Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 7.196385966 7.432877888 6.869313341 7.212419443 7.145037479 7.270912751 113730621 PobA Organic Remediation Aromatics Aromatic carboxylic acid Caulobacter sp. K31 8.347879955 8.29018072 7.960902679 7.940086766 8.071130775 8.323000617 7.875610018 8.551308285 7.644109437 7.917007127 7.83798462 160917702 narG Nitrogen Denitrification uncultured bacterium 8.061569734 8.119644767 8.219017487 8.125595306 7.655417978 7.700076477 8.026079409 8.606434641 8.13709055 7.878923562 7.878938882 159172892 hly virulence hemolysin Vibrio sp. AND4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.244137076 8.664417808 8.135313836 8.279238903 7.959181827 7.630427325 7.677767358 7.897031096 7.890767787 7.701411605 7.971650705 255340891 amyA Carbon cycling Carbon degradation Starch Flavobacteriaceae bacterium 3519-10 7.871523764 8.191391763 7.585658901 7.206888994 7.511132139 6.82029321 7.030457167 7.477935086 7.124885192 7.438861214 89340834 nhh Organic Remediation Aromatics Nitoaromatics Mycobacterium flavescens PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 7.929369476 7.840895691 7.852932733 8.014832571 8.063303949 7.953074402 7.954412058 8.124855424 7.629501432 229466717 arcA Stress Oxygen limitation Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Candidatus Hamiltonella;species:Candidatus Hamiltonella defensa; 8.074959835 8.045011796 6.83309404 7.065714912 149190269 mer Metal Resistance Mercury Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 7.836259631 7.907637916 7.631535843 7.42092873 7.492394738 7.575239603 7.809389591 19716121 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 8.127464941 8.304446695 8.12553802 8.288962395 8.242223706 7.86088223 8.296620166 8.308315486 8.221740825 8.357246422 8.334661835 83308655 amoA Nitrogen Nitrification superkingdom:Bacteria; 7.999616095 7.755565868 7.919152926 7.643087609 8.190462905 8.082630255 7.610060673 7.8065532 40809660 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira; 7.698729604 7.642693033 7.625363588 7.63293263 8.344290569 7.553577377 7.751122099 7.903736693 88866201 HBH Organic Remediation Aromatics BTEX and related aromatics Jannaschia sp. CCS1 7.747448051 7.866723344 7.748202712 7.992065006 7.524781942 8.058371648 7.804253944 7.822018853 7.783191928 167349391 pcc Carbon cycling Carbon fixation Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 7.538163146 7.503531117 7.534687752 7.464050329 7.754611911 7.971134804 7.676089891 7.930173488 7.649769854 238894369 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 7.835062538 7.488511263 7.682613881 7.744947866 7.764860932 8.017625263 7.663673188 7.572126778 70986178 pheA Organic Remediation Aromatics Other aromatics Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 8.144126146 8.334077747 7.876809736 8.248545145 8.145900422 8.298727355 8.087739931 8.134773964 8.159017983 8.429349134 3128305 gyrB other category gyrB Rhodobacter capsulatus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 7.575669385 7.219484018 7.285834491 7.376564729 7.576472837 7.578798815 7.426663386 7.429517944 7.585926566 222112087 phn Organic Remediation Herbicides related compound Diaphorobacter sp. TPSY superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax ebreus; 8.350477605 8.266963499 7.516782559 7.832121038 8.067303772 8.000338011 7.796343706 8.323069399 7.427428956 7.803824045 7.801312591 172056204 fnr Stress Oxygen stress Exiguobacterium sibiricum 255-15 8.546388761 8.488611538 8.038030852 8.390837228 8.307847575 8.566989502 8.376569255 8.293437289 8.682911469 8.822355131 8.449084978 146386309 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas chlororaphis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas chlororaphis; 7.649625557 7.691748499 8.090378006 7.689518245 7.810192439 8.128156594 7.979487402 7.937717628 8.012450257 71735139 bphF1 Organic Remediation Aromatics Polycyclic aromatics Pseudomonas syringae pv. phaseolicola 1448A 8.036164923 8.256815288 7.846123041 7.884444799 7.689815394 7.739144822 7.991313475 8.16668887 8.101649676 7.77653291 8.153035505 150384572 ahpC Stress Oxygen stress Victivallis vadensis ATCC BAA-548 superkingdom:Bacteria;phylum:Lentisphaerae;family:Victivallaceae;genus:Victivallis;species:Victivallis vadensis; 7.839375626 7.514221176 7.62765029 7.703487045 8.220964182 8.423527971 8.081897667 7.743022821 7.874204115 270739512 sigma_70 Stress Sigma factors Desulfovibrio aespoeensis Aspo-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio aespoeensis; 7.656019559 7.247533626 148500227 SMR_antibiotics Antibiotic resistance transporter Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.342736176 8.586348634 8.38635436 8.504196126 8.696814501 8.518598631 8.752018211 8.950582718 8.784143066 77412018 proV Stress Osmotic stress Streptococcus agalactiae CJB111 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus agalactiae; 7.503292392 7.696852217 7.693161124 7.077268176 7.061768936 7.782961312 7.364345202 7.64734379 7.661425899 110825038 ChnE Organic Remediation Other Hydrocarbons Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.01319505 7.412603539 7.663626727 7.839095243 7.943144906 7.876243543 7.791707018 7.510992093 7.512542617 198255324 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 8.21618373 8.273374004 8.575428403 7.991235949 7.831439694 8.0990075 8.298752457 8.299102078 8.327496083 8.233804237 7.876842947 90569593 katA Stress Oxygen stress Pseudomonas aeruginosa superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.233389369 6.809300582 7.002034492 6.965932898 7.2610234 227238298 gdh Nitrogen Ammonification Mobiluncus curtisii ATCC 43063 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus curtisii; 7.553491389 7.821821918 7.990825978 8.045154075 7.933761515 7.660659712 8.192215155 8.10128 259484291 phytase Phosphorus Phosphorus utilization Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.727879518 7.638831274 7.491676259 7.342825235 7.430955047 7.848172815 7.374411182 7.258961145 7.428705345 83839164 ahpC Stress Oxygen stress Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 8.115046857 8.126719384 7.766091538 7.837809869 8.037505349 7.938994805 8.104105453 7.961714553 8.006921027 158330279 ureC Nitrogen Ammonification Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 8.570872068 8.348682672 8.424792006 8.088104841 8.059852301 8.532308716 8.70572764 8.283316371 7.987340718 227113762 obgE Stress Radiation stress Pectobacterium carotovorum subsp. brasiliensis PBR1692 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 7.987784011 7.816095392 7.605879286 7.486201338 7.44179037 7.74178712 7.222949062 7.328330694 7.193883132 76258492 pulA Carbon cycling Carbon degradation Starch Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 8.44724852 8.653831406 8.002377461 8.109587289 8.166182672 8.531406342 8.100277592 8.498110333 7.97959349 8.067545431 8.040364867 71065515 arsB Metal Resistance Arsenic Psychrobacter arcticus 273-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter arcticus; 7.514666266 7.325704745 7.382526275 6.913666391 7.264816106 7.589448356 7.524978305 7.232733971 94985323 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 8.010983773 8.122060305 7.72371685 7.994643869 8.385838713 8.208165279 8.038815762 8.382495344 8.197839829 8.105072423 8.015130214 188582131 fnr Stress Oxygen stress Methylobacterium populi BJ001 8.025781948 8.063698974 162456964 sigma_24 Stress Sigma factors Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 7.71051716 7.76393685 7.951852617 7.786640276 7.929772895 8.058429808 7.909052621 7.971069466 8.037465996 260604782 type_III_secretion virulence secretion Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 8.898805745 8.719666906 8.279434247 7.625372419 8.281388311 8.225791523 8.208640242 8.183005775 8.133466089 8.295151855 21224281 todF Organic Remediation Others Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 7.891735613 8.164575079 7.980671218 8.215010532 8.683179474 8.249661888 8.487334646 7.976317406 8.353545081 74057779 ZntA Metal Resistance Zinc Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 8.624788763 8.581599912 8.843070779 8.639530972 8.216135035 8.407962356 8.834681274 8.680679929 8.465753876 8.451645832 8.733548556 156232069 sigma_24 Stress Sigma factors Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 7.334761658 7.518170486 8.117597344 8.3130753 7.601964865 8.247845213 7.83748461 7.85435342 7.963395732 218660914 BADH Organic Remediation Aromatics Other aromatics Rhizobium etli IE4771 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.603609284 8.496289618 7.994447513 7.728963897 8.102298922 8.162807857 7.89997812 7.750511267 7.728002411 7.822782068 119718771 pcc Carbon cycling Carbon fixation Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.277385699 8.442649709 8.514263169 8.281475349 8.359605638 8.585170643 8.680013007 8.36636254 8.311970448 8.488269709 217503359 fnr Stress Oxygen stress Methylocella silvestris BL2 7.7902534 7.52204163 7.716504253 8.237887926 7.68581125 7.907755597 7.799600866 7.530526769 7.889639583 171282647 clpC Stress Protein stress Streptococcus infantarius subsp. infantarius ATCC BAA-102 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus infantarius; 6.460260391 7.089574338 148263194 hydrogenase Energy process Energy process Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 7.459257992 7.446851447 7.483508403 7.053846159 7.326190666 7.442734862 227488467 katE Stress Oxygen stress Corynebacterium glucuronolyticum ATCC 51867 8.928357519 9.490450576 9.641442632 217977652 bphF1 Organic Remediation Aromatics Polycyclic aromatics Methylocella silvestris BL2 8.125848247 8.266171359 8.021588902 8.039505991 8.47159777 8.141574636 8.408588792 8.312336499 8.12458789 163781843 atzA Organic Remediation Herbicides related compound Hydrogenivirga sp. 128-5-R1-1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenivirga; 7.524691421 7.240883654 7.582320907 7.178961844 7.03790129 7.649811133 7.27653345 7.288472037 7.453200889 158332056 nagG Organic Remediation Aromatics Aromatic carboxylic acid Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 7.770062844 8.232203963 8.353530901 8.637252193 8.162693495 8.569366586 7.940939462 8.550520877 8.022185258 218174343 amyA Carbon cycling Carbon degradation Starch Cyanothece sp. PCC 7424 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.957926488 8.325521102 7.543410442 7.325451402 7.372493752 7.178224827 7.616451635 12667660 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium UMTRAdsr610-10 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 8.180666643 8.695769195 7.608438214 7.508636325 7.578808365 7.556482085 89890058 amyA Carbon cycling Carbon degradation Starch Flavobacteria bacterium BBFL7 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria; 7.718886654 7.463685174 7.035473429 7.274708723 7.458224687 7.516393494 7.321313887 45386115 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 7.570215962 7.624240331 7.112641332 7.208781485 7.712389626 17385492 narG Nitrogen Denitrification uncultured bacterium 7.860600872 8.23647763 7.329759714 6.947871946 7.274851676 6.857005121 7.388646313 7.218330925 7.004346836 7.691560389 119958982 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.449376623 8.300827533 8.112881381 8.361497649 8.278813789 8.5252746 8.854323786 8.220179272 8.632900985 8.356789345 8.353936842 90336218 mer Metal Resistance Mercury Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 8.633907405 8.548059761 8.553916011 8.454490267 8.756466442 8.495374609 8.460021866 8.237489019 163811637 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.249014392 7.08157789 115399956 cellobiase Carbon cycling Carbon degradation Cellulose Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.632415935 7.918842872 8.202588356 8.536774819 8.269365855 8.349286869 7.880839368 7.968066213 7.835635477 254557803 SMR_antibiotics Antibiotic resistance transporter Lactobacillus plantarum JDM1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus plantarum; 7.70675186 7.665738654 8.037890009 7.725034718 7.396750505 8.141106027 7.479671636 7.900693277 8.013299622 120326380 pstB Stress Phosphate limitation Marinobacter aquaeolei VT8 8.027095375 8.136311659 7.847531633 7.798761409 7.693862327 7.769810221 8.288933623 8.144367154 8.026854913 7.821849373 7.925451651 112463089 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.602672655 7.761035213 8.217582523 7.448733165 7.349519055 7.42511046 7.645417893 167772679 pstS Stress Phosphate limitation Anaerotruncus colihominis DSM 17241 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Anaerotruncus;species:Anaerotruncus colihominis; 8.003038646 8.224864996 7.169793921 7.71675814 7.327690013 7.096969263 7.894987693 116073299 pilin virulence pilin Synechococcus sp. RS9916 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.939038195 8.335246113 7.682241023 7.61792372 7.543198594 7.285691799 7.556401551 7.560281674 7.609338271 7.46884857 146337184 MATE_antibiotic Antibiotic resistance transporter Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.175461603 7.975082812 7.893968709 7.881618271 7.958747874 7.954176368 7.796284185 7.956858917 7.532625837 127513353 pimF Organic Remediation Aromatics Aromatic carboxylic acid Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 7.963273182 7.914468487 7.823972419 7.597283435 8.137865387 7.926663692 7.892011408 8.574080766 133739064 ArsC Metal Resistance Arsenic Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 8.116530786 8.187556484 7.193221959 7.594629047 7.804630609 7.833217423 7.579502444 7.597751346 7.572181224 7.697022908 84494737 amyA Carbon cycling Carbon degradation Starch Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 7.716062184 7.794778081 8.170642533 8.396274066 7.715928505 8.554493179 7.612669122 7.550875121 7.738845867 184195187 Catechol Organic Remediation Aromatics Other aromatics Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.923314249 8.748821742 8.135291946 7.99135785 7.985698218 7.92528212 8.355058394 8.096194403 154154998 AceA Carbon cycling Carbon degradation others Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 7.962772707 8.339610389 7.992807839 7.90057636 7.744633674 7.704863502 8.183825587 7.984360745 8.364051789 8.235682918 8.260240527 118170938 SMR_antibiotics Antibiotic resistance transporter Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 7.52141732 7.392300197 7.662729775 7.820172047 7.695623699 7.769670451 45386201 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 8.238215711 8.096495392 7.483254736 8.026272869 8.00015928 8.001100889 7.270653387 8.139123561 7.669064189 7.844608457 8.030049559 5702379 TerZ Metal Resistance Tellurium Proteus mirabilis 8.134563052 8.444940129 82795284 type_III_secretion virulence secretion Pseudomonas syringae pv. tagetis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 7; 8.125587564 8.705847879 8.153405222 8.174758118 8.294308333 8.236965702 8.359589864 8.375898627 8.241789282 8.325009731 8.487566896 61657886 glucoamylase Carbon cycling Carbon degradation Starch Hypocrea lixii superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 7.297900087 7.565237437 7.319510859 7.107073366 7.220381335 24346052 FTHFS Carbon cycling Acetogenesis Shewanella oneidensis MR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella oneidensis; 7.994226751 7.837711548 7.883219504 7.324218524 8.164130062 7.885284522 7.815540479 8.052611729 238580439 amyA Carbon cycling Carbon degradation Starch Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 7.695571984 7.698682904 7.548055834 7.345941518 7.65637436 7.820099067 7.776389956 7.561810557 238801080 B_lactamase_A Antibiotic resistance Beta-lactamases Proteus mirabilis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus; 8.168554515 8.122255907 8.335311396 8.426449699 8.294301843 8.621082088 8.378247685 8.46892635 8.318723806 118469596 nmoA Organic Remediation Aromatics Nitoaromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 7.908549069 8.341283937 7.649942756 7.999919569 8.156213957 7.182113188 7.583274759 7.487628656 7.790854389 2644998 dnaK Stress Heat shock planctomycete str. 140 9.389822078 9.343727098 8.200795345 8.513112696 8.421932105 8.330530149 8.047373175 8.579300381 94471143 narG Nitrogen Denitrification uncultured bacterium 8.240454815 8.350984219 8.537827138 8.558700027 8.480636435 7.777837973 8.503503315 8.501915306 8.38672298 8.347254242 8.254981615 210068286 tfdA Organic Remediation Aromatics Chlorinated aromatics Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 8.23517461 8.233447406 7.656303785 8.202874975 8.337295142 8.282689679 7.925476754 8.437228694 7.964670983 8.330877853 8.322983223 118470310 nmoA Organic Remediation Aromatics Nitoaromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 7.528685253 7.674552882 7.526044305 7.330250205 7.735198052 7.980380474 7.87751123 7.800161165 15622887 ferredoxin_oxidoreductase Bioleaching Electron transport Sulfolobus tokodaii str. 7 8.256296766 8.612077782 7.805125625 7.78158946 7.665006171 7.518873237 7.158572737 7.52735472 30721807 FTHFS Carbon cycling Acetogenesis Methylobacterium extorquens superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 8.400236663 8.3076139 7.874697383 8.254149313 8.125316084 8.319467083 8.079434695 8.178071651 7.719470438 209551302 Arylest Organic Remediation Aromatics Other aromatics Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.224673032 7.379199123 7.007841698 7.202820468 7.405366509 120436873 ahpC Stress Oxygen stress Gramella forsetii KT0803 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Gramella;species:Gramella forsetii; 7.838137355 8.312658577 7.857325086 8.143847373 7.890434577 7.294802975 7.977715378 7.831500382 7.791352547 7.861105103 8.058742869 113941950 chnB Organic Remediation Other Hydrocarbons Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 8.121812159 8.043582186 7.215943838 7.258831921 7.719496175 256586999 hly virulence hemolysin Saccharomonospora viridis DSM 43017 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora viridis; 8.238867418 8.082285489 8.51195353 8.324526182 8.055281467 8.276599417 8.589161612 8.487289984 8.442295814 8.224944883 8.39259774 119536429 ChrA Metal Resistance Chromium Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 7.798559418 7.764491616 8.049469617 8.165581671 7.936998089 7.893424726 7.65436049 8.114397158 7.896264949 149783343 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.120381715 8.082923923 7.851792047 8.101204307 7.918841421 8.327880697 8.086849479 8.062249488 7.821141892 28624824 dnaK Stress Heat shock Mycoplasma haemocanis 7.819918166 8.258836077 7.533702403 7.39373808 7.557149518 7.357487144 7.432152038 7.778511342 7.516996187 7.327043936 7.626640491 77962286 gyrB other category gyrB Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 8.03869213 8.456813911 7.656964492 7.627327404 7.739873658 7.818207066 7.652952869 8.040179434 7.512721967 7.54043361 7.598774347 227098969 AceB Carbon cycling Carbon degradation others Geodermatophilus obscurus DSM 43160 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Geodermatophilus;species:Geodermatophilus obscurus; 8.149752109 8.199743878 7.998984102 8.268111943 8.037083053 8.009442334 8.475104508 8.354949809 8.317566421 8.291034394 8.239565377 197087547 fnr Stress Oxygen stress Geobacter bemidjiensis Bem 7.612352437 7.558009887 7.922333156 7.934663934 7.559042484 7.608633954 7.712240435 7.690455573 226319423 sigma_70 Stress Sigma factors Deinococcus deserti VCD115 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 8.470192638 8.077725563 8.386773949 8.481422772 8.071704597 8.442653541 8.246279064 8.440597223 8.105239317 8.083284201 8.205240315 118592062 sigma_24 Stress Sigma factors Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 8.834921543 8.563621854 7.948481205 8.791691218 8.890185816 8.38159902 8.576204036 8.406765628 8.141010798 37726843 dsrA Sulphur sulfite reductase uncultured prokaryote 8.193963447 8.25083587 7.592420469 8.189796778 8.094312146 8.337367996 8.040722294 8.229566768 7.916935066 7.766127188 8.09459823 159899488 amyA Carbon cycling Carbon degradation Starch Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 8.228550695 8.323981091 8.013042102 7.873324425 7.948765798 8.12703372 7.771522359 7.949324836 8.173550849 8.476164778 84695870 ChrA Metal Resistance Chromium Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8.140124741 7.986310179 8.308664491 8.431319845 8.476776044 7.924823099 8.280551928 8.204093961 8.275560807 8.505912262 7.992343824 110827186 vanA Carbon cycling Carbon degradation Others Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 8.260096027 8.598975221 8.363676262 8.307523674 8.501261134 7.897847941 8.738485575 8.473310979 8.495009213 8.468470855 8.517941425 86568078 mmoX Carbon cycling Methane Methane oxidation Frankia sp. CcI3 7.505150647 7.424589175 7.526931909 7.742615024 7.561703083 7.814013603 7.611962409 7.379374306 7.585704737 112462345 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.443313387 8.777309102 8.335284263 8.224850031 8.118944705 7.518965546 7.457045235 8.069074186 8.186491912 7.962571126 118052245 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.489544739 8.389980554 7.829700682 7.47075861 8.206536744 8.139474795 7.970706323 8.212415826 28542611 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.118817773 8.494881901 7.362396366 7.499508946 7.329544171 7.458588635 7.065648416 8.071308592 7.284592332 7.168797618 7.409904264 150398029 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 7.708233627 7.666992272 7.622874655 7.696247952 7.791847854 8.219635624 8.038821578 7.479443706 7.710683718 66851585 endochitinase Carbon cycling Carbon degradation Chitin Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 7.598893076 7.707286061 7.689959084 7.539671692 7.783262382 7.768748402 8.178184621 7.730590761 7.556401214 145221861 nmoA Organic Remediation Aromatics Nitoaromatics Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 7.542448904 7.39756465 7.507137618 7.967049557 7.7523054 7.859877549 7.622632573 7.530054148 103487736 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Sphingopyxis alaskensis RB2256 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 8.352096722 8.369724651 8.035702637 7.887519508 7.72351838 7.479550309 7.931523598 8.062923566 7.982997919 7.653986719 7.845804086 84703871 alkB Organic Remediation Other Hydrocarbons Parvularcula bermudensis HTCC2503 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 8.391998098 8.267800164 7.681623542 7.342075486 7.609310917 7.252150778 7.161969643 7.564219801 7.388011966 7.859405764 115518335 pcc Carbon cycling Carbon fixation Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.341690392 8.225483634 7.860484379 7.641442784 8.124103199 8.124664331 7.937049963 8.086434413 8.129180214 8.056717294 8.326733476 165880047 exoglucanase Carbon cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.263320896 7.497527187 7.311612061 6.64450214 6.646140323 7.55510121 191638551 grpE Stress Heat shock Lactobacillus casei BL23 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus casei; 7.924331624 8.113771636 7.308630862 7.276276543 7.195762707 6.611934246 6.553075672 7.535196304 6.996563992 7.040273185 7.135931346 159140445 xylanase Carbon cycling Carbon degradation Hemicellulose Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.169192576 8.103581481 8.098891014 8.221257493 7.796413552 8.007694232 7.966635315 8.14805819 7.852491197 7.711872063 7.714909722 220962567 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Caulobacter crescentus NA1000 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 8.258587697 8.19646369 8.108414573 8.334090431 8.330980248 8.173312272 8.453836803 8.52858375 8.385745113 8.664499239 8.394888353 167654080 ChrA Metal Resistance Chromium Anaerostipes caccae DSM 14662 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Anaerostipes;species:Anaerostipes caccae; 8.222699299 8.286436771 7.924694505 7.797861134 7.744382025 7.498307014 7.33213542 8.059636825 7.715284713 7.634408374 8.025966795 10644443 pcpB Organic Remediation Herbicides related compound uncultured eubacterium superkingdom:Bacteria; 7.178982827 6.94204328 7.139917879 6.794074487 7.134170956 262197207 glnA Stress Nitrogen limitation Haliangium ochraceum DSM 14365 9.338244937 9.721493025 9.33653801 8.620712015 9.467941867 8.635048519 9.346341257 9.224800238 9.588530535 160900427 atzC Organic Remediation Herbicides related compound Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.879132164 8.758012368 8.224312846 8.611531453 8.702976974 8.037103792 8.928529844 8.344725613 8.667659224 8.216462424 256357486 ABC_antibiotic_transporter Antibiotic resistance transporter Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 8.286257089 8.141198952 8.233015124 8.365453785 8.289420083 8.157766758 8.132319005 8.263019629 149178897 pstB Stress Phosphate limitation Planctomyces maris DSM 8797 7.265803217 7.380267481 7.465136535 8.057022402 7.168791489 7.197254659 7.139720311 7.94443601 220911599 tfdA Organic Remediation Aromatics Chlorinated aromatics Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 9.178535977 9.128246018 8.802649703 8.834996407 8.946968954 8.713463216 8.755532377 8.731119041 261405575 sigma_24 Stress Sigma factors Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.336095634 7.375550612 7.468620344 6.853359697 7.671143198 7.479362215 7.38544126 7.446125914 145591451 APS_AprB Sulphur adenylylsulfate reductase Pyrobaculum arsenaticum DSM 13514 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum arsenaticum; 7.253355793 7.08053664 7.480554211 7.194532152 7.086160707 7.491759794 6.999437982 7.112051433 167784120 akbF Organic Remediation Aromatics BTEX and related aromatics Geobacillus stearothermophilus 9.194166155 8.187051682 8.383101426 8.280252482 8.297080804 8.131495419 8.314816682 8.182833076 8.315728914 8.380895581 8.346060313 146326617 narJ Stress Oxygen limitation Candidatus Vesicomyosocius okutanii HA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:Calyptogena okutanii thioautotrophic gill symbiont; 6.917397439 7.227955196 55978076 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.704215815 7.849752643 7.955727633 8.288872425 7.98642276 8.135147474 7.958069871 7.872346645 7.652017499 118419955 gyrB other category gyrB Alcanivorax dieselolei superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 8.19494317 8.457348297 8.101917579 8.010452593 8.04868745 7.887314096 7.878758962 7.62922828 7.774977535 7.805418182 126713703 obgE Stress Radiation stress Roseobacter sp. CCS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.677501858 8.966204029 8.689525751 8.702573786 8.517057358 8.658754308 8.398736972 8.817367896 8.803971091 77459193 cbdA Organic Remediation Aromatics Chlorinated aromatics Pseudomonas fluorescens PfO-1 7.085005403 7.290227634 6.924899167 7.266898075 7.123531429 6.974248907 51591476 amyA Carbon cycling Carbon degradation Starch Yersinia pseudotuberculosis IP 32953 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia pseudotuberculosis; 7.25424956 6.93133887 6.901335471 6.739623874 120563183 phoB Stress Phosphate limitation Desulfovibrio vulgaris subsp. vulgaris DP4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 7.715108571 7.800935616 8.046371785 7.657650599 7.88686563 7.773375929 8.153487325 7.902015634 7.753373405 32895244 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.565542995 8.444203853 7.81936754 7.072692635 7.260206318 7.25405606 7.952409993 7.681501485 7.463508443 7.545530542 89143216 gyrB other category gyrB Microbacterium testaceum superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium; 7.664874992 7.738545158 7.547137295 7.2456881 7.491738556 7.864293493 169665533 aoxB Metal Resistance Arsenic uncultured bacterium superkingdom:Bacteria; 8.103638343 8.133748781 7.160980274 7.191232363 7.474857364 7.0994697 6.876051707 7.116318754 121302142 metC Metal Resistance Mercury Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 7.783328345 7.813637196 7.628896054 7.720918357 7.965188901 8.034730952 7.882207247 7.580062515 7.891223352 6681674 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces thermoviolaceus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.125427635 8.198802915 8.163576689 7.690482511 7.69962456 7.693514574 7.83447634 8.065811223 7.837522242 7.708085906 7.596144841 115386062 nmoA Organic Remediation Aromatics Nitoaromatics Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.763562928 7.782366945 7.030086132 7.679648322 7.711204665 7.5978645 46116920 pheA Organic Remediation Aromatics Other aromatics Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 8.108764483 8.070272635 7.339350227 7.266247634 7.42298413 7.159992397 7.051780271 7.682917696 7.321296524 7.465674087 113874470 catB Organic Remediation Aromatics BTEX and related aromatics Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 8.200448756 8.2149368 7.61712248 7.81453791 7.97996411 8.036262457 7.856139505 7.852632437 7.799928932 7.976718514 225519841 hrcA Stress Heat shock 'Nostoc azollae' 0708 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena azollae; 8.008098852 8.230375028 254442323 sigma_24 Stress Sigma factors Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 8.262190828 8.133857684 8.562484615 8.519799161 7.974355003 8.40025709 8.346291615 8.258459925 8.201404751 8.184445475 7.900295144 109452515 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.796788707 7.861986906 213990510 iro virulence Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.816872818 7.852827975 8.249245842 8.680627805 7.735007549 8.68844119 8.064303226 7.917372057 8.079647925 239910733 pstB Stress Phosphate limitation Thermococcus gammatolerans EJ3 7.316821589 7.776780388 7.962920912 8.239963429 7.089980559 8.100309219 7.662773037 7.331518515 7.883559972 119715080 catB Organic Remediation Aromatics BTEX and related aromatics Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 7.515600416 7.34395137 7.841739144 7.950022696 7.779264847 7.760973509 7.765997797 71038714 pimF Organic Remediation Aromatics Aromatic carboxylic acid Psychrobacter arcticus 273-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter arcticus; 8.006636403 8.389827095 7.508330266 7.65730188 7.444567264 7.652260604 7.304442143 7.339139955 6.952239664 7.67988536 121535221 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Thermosinus;species:Thermosinus carboxydivorans; 7.392535027 7.506555308 7.946537281 7.669086754 7.30824949 7.610094613 7.22880848 6.865487421 7.366081253 32448512 linB Organic Remediation Pesticides related compound Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 7.795371274 8.204987956 7.407599594 7.287385591 7.009304731 7.108732304 218518065 phoB Stress Phosphate limitation Acidithiobacillus ferrooxidans ATCC 23270 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 7.254272456 7.239254946 7.353260252 7.326882661 6.857777336 224002929 Tet Antibiotic resistance other Thalassiosira pseudonana CCMP1335 superkingdom:Eukaryota;phylum:Bacillariophyta;class:Coscinodiscophyceae;family:Thalassiosiraceae;genus:Thalassiosira;species:Thalassiosira pseudonana; 8.236821501 8.346806324 7.479041135 7.581536753 7.780669574 7.773529179 7.684895534 7.82071482 8.048052108 7.490210975 7.928241454 260428645 inv virulence invasion Citreicella sp. SE45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 7.243053916 7.559744382 7.876855511 6.919798494 7.849551426 148503402 Catechol Organic Remediation Aromatics Other aromatics Sphingomonas wittichii RW1 7.174332909 7.421490444 7.622420303 7.775199559 6.952097857 7.90504125 7.293405441 7.178078754 258554190 fnr Stress Oxygen stress Nakamurella multipartita DSM 44233 7.365819706 7.48560526 7.947536381 7.910832146 7.685929835 8.105662908 7.39583609 7.521111457 7.759508531 109454940 sox Sulphur Sulphur oxidation Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 8.329545712 8.353737149 8.262576349 8.047690271 8.241251791 7.786473382 7.780970524 8.106219302 7.887673492 7.942113329 7.987584756 151302316 APS_AprB Sulphur adenylylsulfate reductase sulfate-reducing bacterium DSM 14454 superkingdom:Bacteria; 8.308540983 8.364798567 7.750307647 7.692533596 7.683123382 7.345043789 7.781216559 7.481566282 7.611630512 7.736110608 145568748 iro virulence Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 7.556621743 7.660279282 7.630660321 7.164019255 7.827270897 7.908375174 7.951995377 7.762811076 7.744484654 37548706 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.225859867 8.136444441 7.76084933 7.884042897 8.005558561 7.535838347 8.055307543 8.092897938 8.036612287 7.756059935 7.882474251 227164874 pstC Stress Phosphate limitation Proteus mirabilis ATCC 29906 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 7.479726085 7.182251703 7.170247913 7.155223202 7.179903123 7.183464035 7.372919553 7.010389767 7.360312222 88864330 pstC Stress Phosphate limitation Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 7.590413777 7.590256645 7.357343458 7.287772267 7.422297709 239827733 pstA Stress Phosphate limitation Geobacillus sp. WCH70 7.698855499 8.352502657 7.412479044 7.229284028 7.428095916 7.061417811 7.115014203 7.755096535 7.218077627 7.332508535 7.448941245 145221254 Catechol Organic Remediation Aromatics Other aromatics Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 7.619240073 7.366567529 7.621359701 7.373679195 8.333655322 7.496965881 7.405364323 7.45843712 242309949 Mex Antibiotic resistance transporter Helicobacter pullorum MIT 98-5489 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter pullorum; 7.937000452 7.976159012 7.309992003 7.421020813 7.223004282 6.91913665 7.009777554 7.884935195 7.230129949 7.282600113 7.492368475 88797598 sigma_32 Stress Sigma factors Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 7.298446765 7.103896891 7.62828025 7.202583257 6.922788411 6.936893543 84787104 gyrB other category gyrB Erythrobacter litoralis HTCC2594 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 7.452736395 7.43963546 7.447922247 7.714380705 7.401182263 7.181714771 148508386 pstB Stress Phosphate limitation uncultured haloarchaeon 7.980575181 8.211532597 7.676110388 7.477584373 7.369580906 7.495832381 7.50048952 7.641165278 7.326675219 7.455099208 7.570229323 189438580 ara Carbon cycling Carbon degradation Hemicellulose Bacteroides intestinalis DSM 17393 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides intestinalis; 7.362933524 7.281219928 7.434834361 209546135 tfdA Organic Remediation Aromatics Chlorinated aromatics Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.290760056 7.132606706 86143946 obgE Stress Radiation stress Leeuwenhoekiella blandensis MED217 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Leeuwenhoekiella;species:Leeuwenhoekiella blandensis; 7.462414382 7.38274433 7.497458865 7.329202001 7.174288584 7.720410203 7.482076289 7.047459016 7.729495877 172057119 glnR Stress Nitrogen limitation Exiguobacterium sibiricum 255-15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 7.780166179 7.980800668 7.626974322 7.71800672 7.831001915 7.832572737 7.849626781 7.662653838 88926862 CopA Metal Resistance Copper Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 8.351618427 8.437427819 8.572500603 8.530151498 8.462265357 8.237990612 8.617709437 8.331830292 8.238027118 8.33492874 7.956103384 167361075 nhh Organic Remediation Aromatics Nitoaromatics Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.066459668 8.170259408 7.821725893 8.006869585 7.846969221 7.940244795 8.057147149 8.208837213 7.834760715 7.957116091 7.672177123 29824639 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.032913287 8.223903162 7.779530812 7.631786953 7.767028692 7.657326315 7.235851488 7.744336211 85693621 obgE Stress Radiation stress Idiomarina baltica OS145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina baltica; 7.278327891 6.950325177 7.325896621 7.243783617 7.956925842 7.331799104 6.987671528 7.540370908 73671379 bphC Organic Remediation Aromatics Polycyclic aromatics Rhodococcus erythropolis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.182320752 8.108621257 8.383219713 8.411064414 8.271518478 8.424689967 8.477724845 8.206322313 8.449665032 8.374182535 8.109613046 221185239 grpE Stress Heat shock Atopobium rimae ATCC 49626 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Atopobium;species:Atopobium rimae; 7.976661845 8.122354211 7.999065607 8.043741993 8.026295033 7.514653281 8.136353239 7.912188949 7.940103824 7.816917425 8.207614947 187919683 sigma_24 Stress Sigma factors Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8.02589239 8.079976224 8.280376667 8.451304975 8.052979332 8.42534157 8.130619533 8.077412956 7.882193763 8.131442282 7.751466548 149913978 ureC Nitrogen Ammonification Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.76072422 7.445005837 7.463315683 7.201804843 7.575327498 7.511868179 7.278757112 78609319 srt virulence surface protein Lactobacillus sakei subsp. sakei 23K superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus sakei; 7.995382833 8.106863326 7.505703925 7.295078072 7.385471025 7.039914402 7.49200162 7.677415978 7.36535599 6.958493754 7.17443345 40745190 mdlB Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 8.092945185 8.333284837 7.530713238 7.603284439 7.361057418 7.993519 7.595301673 8.269708352 7.742751175 8.057612679 7.883608714 169244302 pcpE Organic Remediation Herbicides related compound Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.624686348 7.750381143 7.477427811 7.585313108 7.989561027 7.833100609 7.931516308 7.728741924 7.823182258 153797584 grpE Stress Heat shock Actinomyces odontolyticus ATCC 17982 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces odontolyticus; 7.100578708 7.778399821 7.335984987 7.478741983 7.848003505 146405331 MFS_antibiotic Antibiotic resistance transporter Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.474996072 8.421716453 8.354432063 7.966824093 8.450215723 8.249742604 8.284703357 8.295091219 7.668337054 146311761 vip virulence virulence protein Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 7.599679181 7.403433874 32308047 narG Nitrogen Denitrification uncultured bacterium 8.214721876 8.251643117 7.863321658 8.097267418 7.742888947 8.062717826 7.832491047 7.947576862 7.759432408 7.716165439 167664057 phoB Stress Phosphate limitation Clostridium scindens ATCC 35704 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium scindens; 7.430594214 7.171075546 67540440 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 8.092986535 8.134196522 8.062689579 8.050480157 7.736043047 7.672345989 8.504856894 8.013947462 7.654519416 8.082156389 113461649 napA Nitrogen Dissimilatory N reduction Haemophilus somnus 129PT superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Histophilus;species:Histophilus somni; 7.618197305 7.709057855 7.215041005 7.14598627 7.156026639 7.935430584 7.314679919 7.193722723 50983077 toxin virulence toxin Escherichia coli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 7.332549864 7.707114434 7.509036182 7.051570675 7.23962212 7.349691401 7.531528554 152965005 ara Carbon cycling Carbon degradation Hemicellulose Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 8.354979822 7.303143097 8.470932698 8.16260379 8.103367329 8.139847125 108759382 hly virulence hemolysin Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 7.247468197 7.174852613 7.788234858 7.566087148 7.732298113 7.946471937 7.797214745 7.626121311 7.745943355 225114029 AceB Carbon cycling Carbon degradation others Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 8.398574005 8.369832948 8.37006547 8.123255714 8.433335332 8.393995665 8.432607044 8.703094674 158332800 hrcA Stress Heat shock Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 8.258075642 8.269598156 8.240959096 8.408195415 8.269939409 8.332207058 8.482652735 8.526663461 8.742389139 8.403614512 8.332766034 88712208 fnr Stress Oxygen stress Flavobacteriales bacterium HTCC2170 7.911326886 7.858741219 7.039674067 7.146887914 20089773 pstA Stress Phosphate limitation Methanosarcina acetivorans C2A 7.722553821 7.791011465 7.778064041 7.59192298 7.865815374 7.984474127 8.166081475 8.253308003 8.054367396 69268565 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Ferroplasma acidarmanus Fer1 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermoplasmata;order:Thermoplasmatales;family:Ferroplasmaceae;genus:Ferroplasma;species:Ferroplasma acidarmanus; 7.629221131 7.721698528 7.519258691 7.198510375 7.601126314 7.70729535 7.623006995 7.556433401 7.762785825 257779458 arsM Metal Resistance Arsenic Desulfotomaculum acetoxidans DSM 771 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum acetoxidans; 7.343615884 7.068223077 7.242341801 6.786799341 6.614864126 7.357631715 7.284641352 6.951238779 7.429283742 167352467 MFS_antibiotic Antibiotic resistance transporter Shewanella halifaxensis HAW-EB4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella halifaxensis; 7.067044981 7.279292189 7.781617979 7.864944019 7.348634599 7.150164841 7.478245256 7.515043407 126710389 bclA Organic Remediation Aromatics Aromatic carboxylic acid Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 7.907933377 8.059623972 7.832094564 7.875906986 8.191310379 8.339697611 8.247021405 8.003891465 8.093275118 15028607 Fe_S_cluster_binding_protein Bioleaching Electron transport Acidithiobacillus ferrooxidans 8.329991673 8.264578289 8.655899286 7.861564407 8.404108569 8.084645624 8.100280384 8.526665981 7.74643583 169846094 phenol_oxidase Carbon cycling Carbon degradation Lignin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 8.237398185 8.140416544 7.960979312 7.650083578 7.894374794 7.456246715 7.83833065 7.905898434 7.765554981 153887982 CopA Metal Resistance Copper Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 7.998264598 7.7841309 7.467611256 7.571314518 8.080232113 7.793429256 7.952796011 7.904285513 7.910532113 115345827 phytase Phosphorus Phosphorus utilization Yersinia intermedia superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia; 7.652534094 7.644411601 7.564870826 7.381948479 7.785418286 7.756117325 7.53724302 8.053097457 145009678 CopA Metal Resistance Copper Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 9.337639754 9.393167431 8.503041883 8.421268518 8.261710296 8.216440092 8.469945513 8.272180874 8.552447646 8.557625265 8.532234459 46519997 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.947828712 8.356182141 7.859303551 7.652687626 7.685851447 7.323032835 7.521571837 7.72526872 7.334298743 7.827866137 7.506421508 145316699 xylA Carbon cycling Carbon degradation Hemicellulose Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 8.814194108 8.76879244 8.684807177 8.615727721 8.838500662 8.356664921 8.718044769 8.334784451 171989312 amyA Carbon cycling Carbon degradation Starch Exiguobacterium sibiricum 255-15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 7.122198334 7.003531937 115424255 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 7.85262194 8.078915474 7.703227339 7.380940859 7.352892706 6.945300128 7.430498329 7.612295401 7.684705979 7.568923927 7.270955804 115374331 tfdA Organic Remediation Aromatics Chlorinated aromatics Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 8.099553318 8.523003277 8.086180972 8.13062818 7.873616562 7.76563322 8.062116831 8.111618475 8.062299831 7.905808212 7.815942159 85689912 pcc Carbon cycling Carbon fixation Erythrobacter sp. NAP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 8.237205998 8.452361231 7.936961184 8.791846669 8.566501363 8.531517185 8.58422712 8.313973889 83757114 gyrB other category gyrB Salinibacter ruber DSM 13855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 8.143006954 8.20001582 8.048518671 8.199794995 7.858667333 7.603532581 8.286306768 7.896341468 7.912224844 7.687075868 8.340390747 88854740 CopA Metal Resistance Copper marine actinobacterium PHSC20C1 7.989531841 7.947609447 7.92741445 8.091896158 8.448530324 8.108138639 8.392271873 7.974630493 7.992001058 256820534 pcc Carbon cycling Carbon fixation Capnocytophaga ochracea DSM 7271 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga ochracea; 7.940037488 8.122623488 7.846093141 7.823558141 7.560163847 7.926849228 7.924134512 7.338843209 7.783809923 7.720493946 7.801512654 3618274 cumA Organic Remediation Aromatics Other aromatics Sphingomonas sp. 8.30227819 8.365960411 8.440944367 8.243467062 8.361898164 8.183213253 8.521480778 8.30929903 8.446659943 8.286692073 7.949723274 261371723 nplT Carbon cycling Carbon degradation Starch Fibrobacter succinogenes subsp. succinogenes S85 superkingdom:Bacteria;phylum:Fibrobacteres;class:Fibrobacteres;order:Fibrobacterales;family:Fibrobacteraceae;genus:Fibrobacter;species:Fibrobacter succinogenes; 7.182890299 7.060731205 7.367392744 7.21892864 7.251717897 7.616166069 7.136429848 7.291417863 7.405147794 78224092 cytochrome Energy process Energy process Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 7.169503855 6.990899367 6.951889422 7.475499519 7.099391076 6.973030111 218661506 glucoamylase Carbon cycling Carbon degradation Starch Rhizobium etli IE4771 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.439808085 8.196133932 8.556193638 8.638118699 8.580550151 8.114862953 8.948078009 8.029878066 8.749235193 8.718012002 8.477875336 119896537 silC Metal Resistance Silver Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8.477191912 8.396539816 8.175034834 8.584331622 8.56890132 8.278056221 8.426740539 8.137764916 8.092502017 110634596 CadA Metal Resistance Cadmium Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 8.257802097 8.250207676 8.02710097 8.36974335 8.395727887 8.042491814 8.187982678 8.096331311 7.864242969 228761803 B_lactamase_C Antibiotic resistance Beta-lactamases Bacillus mycoides Rock3-17 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus mycoides; 7.231454009 7.200085689 7.27225084 6.989977326 6.811694613 7.642096329 6.986780844 6.94947948 7.132210898 194100328 helicase_family_4 Bacteria phage REPLICATION Enterobacteria phage EcoDS1 7.869950356 8.170924379 7.374516977 7.203569063 6.903399631 114328632 oxyR Stress Oxygen stress Granulibacter bethesdensis CGDNIH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 8.107207984 8.268710126 7.62319136 7.531517412 7.711082373 7.627402165 7.281027671 7.677731433 7.176207501 7.523200065 7.935224486 238728111 narH Stress Oxygen limitation Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 8.130942218 8.036423816 8.006621406 8.2592069 8.216379433 8.149689124 8.079309176 8.240331218 8.178142626 18147179 gyrB other category gyrB Alcanivorax sp. Cro-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 7.528492527 7.634242458 7.57380431 7.524885331 7.712347431 7.356462831 8.069780323 116049959 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas aeruginosa UCBPP-PA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.037693859 7.830602412 8.01009053 7.875100674 8.078577146 8.247700825 8.104155877 8.140201067 7.947879273 255924543 ABC_antibiotic_transporter Antibiotic resistance transporter Actinosynnema mirum DSM 43827 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinosynnemataceae;genus:Actinosynnema;species:Actinosynnema mirum; 7.68770776 7.882143582 7.883672193 7.828963346 8.184780007 8.098974198 8.151809562 7.801409588 8.035256938 212703839 tutFDG Organic Remediation Aromatics BTEX and related aromatics Desulfovibrio piger ATCC 29098 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio piger; 9.388245458 9.54940118 9.296992387 9.384810613 9.305036811 9.326828787 9.094642446 9.315385945 9.472934677 9.396847091 9.299367012 255919536 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Actinosynnema mirum DSM 43827 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinosynnemataceae;genus:Actinosynnema;species:Actinosynnema mirum; 8.914041668 8.558216966 8.411449309 8.074682101 8.460647957 8.4111203 8.576787527 8.803836488 8.695974956 8.49427019 256422749 phoB Stress Phosphate limitation Chitinophaga pinensis DSM 2588 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 7.705706554 7.5634806 7.271575657 7.801030829 7.645654415 7.599598476 7.845682997 116748489 APS_AprB Sulphur adenylylsulfate reductase Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 7.975305127 8.133334607 8.138614301 7.815829193 8.026183545 7.956670242 7.934872726 7.830429919 7.896022899 151302320 APS_AprA Sulphur adenylylsulfate reductase sulfate-reducing bacterium DSM 12567 7.955538102 7.856417122 7.66954765 7.955372068 7.868881114 8.107897991 8.324500805 7.904349512 87306590 nitA Organic Remediation Aromatics Other aromatics Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 7.287196027 7.367588282 7.206448558 7.347903186 6.88370569 7.4055925 6.812236455 6.706218335 119958381 limEH Carbon cycling Carbon degradation Others Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.706596174 8.843460852 8.172853346 8.405565167 8.322207934 8.490413073 8.936963767 8.545989316 8.999172789 8.802866291 8.964425316 67902502 nitA Organic Remediation Aromatics Other aromatics Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.408864 7.37548055 7.366530908 7.214280196 6.847632995 7.651538614 7.580022752 66801889 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 8.177119456 7.977548549 7.838484905 7.808822812 8.279156665 8.044519486 8.115390398 8.014851416 7.847360842 149925301 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Limnobacter sp. MED105 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 8.234825212 8.142054265 7.759558707 7.980215857 8.092981232 7.842767794 7.74290668 7.602300645 8.147097214 7.771911764 67156337 pcaG Organic Remediation Aromatics Other aromatics Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 8.00709472 8.057829086 8.013834284 7.754089625 8.123698257 7.696820544 8.1996877 8.299128885 7.799007279 111020236 cpnB Organic Remediation Other Hydrocarbons Rhodococcus sp. RHA1 8.228830191 8.192830445 7.587890995 7.762891207 7.546672282 7.305538157 7.606347693 7.505312058 7.434576447 7.548819 8978309 bphC Organic Remediation Aromatics Polycyclic aromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.049843344 8.148098194 7.960905166 7.997629874 7.998191217 7.968738842 7.980459769 8.151289087 8.394259755 8.364046507 8.162902863 212672318 fnr Stress Oxygen stress Desulfovibrio piger ATCC 29098 7.282010096 7.674552394 7.623278076 212541694 nagG Organic Remediation Aromatics Aromatic carboxylic acid Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.832002826 8.134111823 7.296494887 7.099048507 7.123695774 7.141588136 6.956280033 7.595521277 91721496 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 8.27037942 8.502235849 7.961533771 7.803585837 8.126950627 8.210529147 7.750198539 8.092835137 7.842016573 7.947497333 7.86838658 213058093 pilin virulence pilin Acinetobacter baumannii AB0057 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 7.86129115 8.33560226 7.49560707 7.453735395 7.728045505 7.142514559 7.073868345 7.699356798 7.417531012 7.37468734 7.641585211 269830472 endochitinase Carbon cycling Carbon degradation Chitin Vibrio alginolyticus 40B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 7.93794146 8.25427545 7.142688546 7.371214171 7.461877969 7.312075028 7.02278379 7.58526093 225167878 pstB Stress Phosphate limitation Dethiobacter alkaliphilus AHT 1 8.17098036 8.734360392 7.528632284 7.618521492 7.667233077 7.75196051 7.228373375 8.344817349 7.794984865 7.391646526 7.707828407 171088252 catB Organic Remediation Aromatics BTEX and related aromatics Geobacillus sp. WCH70 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.375793897 8.235592455 8.269015616 8.718516465 8.417577044 8.631475424 9.066289546 8.370599437 8.842187023 9.153061979 8.97248739 218533261 sigma_24 Stress Sigma factors Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 7.87989263 7.806092625 8.037161897 7.832229976 227079987 pstC Stress Phosphate limitation Corynebacterium lipophiloflavum DSM 44291 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium lipophiloflavum; 7.943353148 7.954326269 7.884874217 7.806068436 7.579884341 7.869417495 7.552026751 8.068993219 7.831740951 7.526915057 7.562908168 68568025 NADH_ubiquinone_oxidoreductase Bioleaching Electron transport Sulfolobus acidocaldarius DSM 639 8.370213626 8.307605282 7.660666472 7.924007683 7.738905832 7.203830494 7.932705432 7.687405469 7.87522687 7.768416533 7.663320359 187927228 pcc Carbon cycling Carbon fixation Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.802152524 8.258878826 8.468526595 8.938871918 9.120349832 8.551313996 9.14097042 8.72175875 8.668929666 8.984250102 8.570940164 94471145 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.604578454 8.094856909 8.217576156 8.178145742 7.804785172 8.382098933 7.988297274 7.873706997 8.161640616 117981779 gyrB other category gyrB Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.118648525 7.811951324 8.052460768 7.361183857 7.57231801 7.817529126 7.854973253 7.850264813 7.932064864 193499146 amoA Nitrogen Nitrification superkingdom:Archaea; 8.115592336 8.226212228 8.262119492 7.993672139 8.304503992 8.330706457 8.027757671 8.450883404 7.896085546 8.016402118 7.763534259 213962033 obgE Stress Radiation stress Capnocytophaga sputigena Capno superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga sputigena; 7.469716606 7.761319723 8.127639192 6.874990102 8.279346926 7.43310963 7.581158232 7.622516653 89895762 tutFDG Organic Remediation Aromatics BTEX and related aromatics Desulfitobacterium hafniense Y51 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 7.55829495 7.458023416 7.269849372 7.467696984 7.148670793 7.416514603 26990049 cytochrome Energy process Energy process Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.07940812 8.276380233 8.526329063 8.344602131 8.087205402 8.598981078 8.235449552 8.248822898 8.217029262 8.317645527 8.383816524 228699263 SMR_antibiotics Antibiotic resistance transporter Bacillus cereus Rock3-44 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 7.395730137 7.243815964 7.27356277 7.262323893 118164811 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium avium 104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 7.870559915 7.852336769 7.98937692 8.081948045 7.879235491 8.254678406 8.138974059 8.366266736 8.107376676 94424683 ara Carbon cycling Carbon degradation Hemicellulose Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 7.449237406 7.527659265 7.490232133 7.937835767 6.888298404 7.528405572 7.506634524 157362170 exoglucanase Carbon cycling Carbon degradation Cellulose Polyporus arcularius superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Polyporus; 8.750110278 8.858467962 8.493621783 8.366653958 8.102508746 8.073415629 8.07619993 8.352813318 8.461709857 8.525695307 32473383 CadA Metal Resistance Cadmium Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 8.333277113 7.85817539 7.842085795 8.023998734 8.199005774 8.083646137 8.536656015 8.263982398 8.003009249 187484341 cellobiase Carbon cycling Carbon degradation Cellulose Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 7.765755207 7.90225505 7.673515851 7.908208918 7.71096128 8.191361372 8.113540408 8.174733115 7.808495447 119451939 pimF Organic Remediation Aromatics Aromatic carboxylic acid marine gamma proteobacterium HTCC2143 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.548350892 7.573923848 7.460269693 7.450470965 7.477763009 8.002689754 7.752197399 7.911769935 7.746991888 118663877 mannanase Carbon cycling Carbon degradation Hemicellulose Clostridium cellulolyticum H10 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium cellulolyticum; 7.829344844 8.10424244 7.319856136 7.440453155 7.234032305 7.03078114 6.732017463 7.77223911 7.13864546 6.999242401 7.180746238 239787594 pilin virulence pilin uncultured bacterium 8.411334378 7.712907325 8.15255675 7.595783641 8.101853051 7.706775101 8.185605219 8.282657232 7.708185351 170176843 pstB Stress Phosphate limitation Thermotoga sp. RQ2 8.018755106 8.166154608 7.374033961 7.307807891 7.653645408 7.273137285 7.02613745 7.27292619 7.139755603 7.442254469 214031728 pcaG Organic Remediation Aromatics Other aromatics Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8.734982036 8.311737115 8.21932358 8.26263299 8.736823741 8.24808003 8.231107387 8.378696129 8.337739213 150036110 sox Sulphur Sulphur oxidation Halochromatium salexigens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Halochromatium; 8.347371615 8.131264219 8.014712572 7.954634868 8.221760932 8.110364235 8.143357795 8.479476761 7.948797022 8.011916145 8.146622436 53723283 nmoA Organic Remediation Aromatics Nitoaromatics Burkholderia pseudomallei K96243 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 8.770005196 8.872831301 7.720764499 7.913234426 8.003518975 8.02436543 7.782475453 7.875199713 7.872982554 8.214638617 73541215 ArsC Metal Resistance Arsenic Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.414314632 8.233458368 8.160379443 8.336637935 8.250003867 8.382351854 8.605579375 8.109476034 8.387771758 8.11780031 8.368501281 224964064 fnr Stress Oxygen stress Erwinia pyrifoliae Ep1/96 8.159789761 8.416393228 8.409448276 8.155524423 8.604800625 8.08514219 8.397560561 8.43586379 8.591672879 119948006 cydA Stress Oxygen limitation Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 8.357382417 8.480412004 7.973938805 7.833589159 7.722351029 8.16826732 7.949954639 8.324209651 8.265486195 8.383606911 159903404 pstB Stress Phosphate limitation Prochlorococcus marinus str. MIT 9211 8.083221613 8.323550659 7.606996266 7.19973137 7.556638469 7.38076786 7.517163103 7.749054166 121307218 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Thermosinus carboxydivorans Nor1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Thermosinus;species:Thermosinus carboxydivorans; 7.62540668 7.678236266 7.297257248 7.230093069 7.574809673 7.993253013 7.713513824 7.470555479 7.429008225 219563156 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 8.119089448 8.005373144 7.674252826 7.524582443 7.790073074 7.937357465 7.771971231 7.997788638 7.657174426 8.067206967 8.128389575 119463866 todF Organic Remediation Others Nodularia spumigena CCY9414 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nodularia;species:Nodularia spumigena; 8.418350383 8.512607188 8.387051602 8.158896065 8.064105236 8.418597119 8.807604752 8.420980574 8.788247758 8.245384471 8.454304393 219868924 tutFDG Organic Remediation Aromatics BTEX and related aromatics Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 7.857965686 8.626882902 7.941579448 8.024233244 8.024369094 8.317531067 7.745041158 8.427310075 7.894556709 7.838816875 7.849109235 157404682 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 9.423871601 8.920686974 8.311723811 8.437954608 8.572081436 8.572442576 8.920806063 8.60722243 9.111458329 8.797254959 8.601162346 148653462 CopA Metal Resistance Copper Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 8.103352233 8.61538099 7.980573479 7.897209086 7.596310164 7.47792275 7.269193059 7.7300891 7.73126 7.744788688 124260056 ahpF Stress Oxygen stress Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 7.177673411 7.289798825 7.685401476 7.64914253 7.716892285 147829853 CorC Metal Resistance Cobalt Clavibacter michiganensis subsp. michiganensis NCPPB 382 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 7.593955632 7.891902348 7.597062336 7.704712916 7.939448127 7.861724848 7.795774502 7.733723038 7.578051454 86281132 fnr Stress Oxygen stress Rhizobium etli CFN 42 7.973494884 8.345793742 8.306254267 7.91562636 8.430622985 8.333884561 8.1629622 8.100731667 8.007355525 149809648 sox Sulphur Sulphur oxidation Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.458316033 7.564011273 7.406814581 7.702851119 7.44987861 7.205993205 7.594606001 7.643994733 89893108 nifH Nitrogen Nitrogen fixation Desulfitobacterium hafniense Y51 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 7.332049656 7.21276767 7.004691043 7.223654854 7.591365707 7.191126016 7.256605078 7.593844292 118734914 phdCI Organic Remediation Aromatics Polycyclic aromatics Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 7.550809119 7.601826188 7.66601587 7.580651735 7.596282913 7.480968722 7.288335164 118703758 gyrB other category gyrB Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.022795459 8.195917841 7.591260078 7.630106659 8.016622765 8.232706689 7.811637722 8.103696522 7.877226253 8.006112377 8.204834203 229822283 Tet Antibiotic resistance other Beutenbergia cavernae DSM 12333 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Beutenbergiaceae;genus:Beutenbergia;species:Beutenbergia cavernae; 8.307033132 8.860336902 8.629043504 8.587754608 7.922112013 8.459380072 8.763090336 8.371435806 8.540118048 8.177524857 255033753 holin_type1 Bacteria phage LYSIS Burkholderia phage KS9 order:Caudovirales;family:Siphoviridae;genus:Lambda-like viruses; 8.042766928 8.203939063 7.690418981 7.518885114 7.316756858 7.443629987 7.490538628 7.890767283 7.728873766 7.102390127 7.298582049 116670480 catB Organic Remediation Aromatics BTEX and related aromatics Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.397508368 7.255134662 7.310942273 7.385033439 7.315289642 6.687908485 7.172296363 84689380 ppx Phosphorus Phosphorus utilization Parvularcula bermudensis HTCC2503 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 8.75529432 8.872588485 8.362772883 8.41810814 8.082618101 8.141801255 8.296614121 8.338415265 8.118282669 8.169970451 8.317612694 19112977 alkK Organic Remediation Others Schizosaccharomyces pombe superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Schizosaccharomycetes;order:Schizosaccharomycetales;family:Schizosaccharomycetaceae;genus:Schizosaccharomyces; 8.12822291 8.099581414 7.856384068 7.946914736 7.776367652 7.430486276 7.605107163 7.930279091 7.759671353 7.664279078 7.698688296 229802153 clpC Stress Protein stress Sphaerobacter thermophilus DSM 20745 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 8.553007767 8.407261629 8.896302691 9.217950099 8.831428147 8.528474651 9.170891369 8.594065248 9.182854396 9.097579204 8.769096877 187425657 phoB Stress Phosphate limitation Akkermansia muciniphila ATCC BAA-835 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Akkermansia;species:Akkermansia muciniphila; 7.524621182 7.526186752 170144036 MFS_antibiotic Antibiotic resistance transporter Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 8.630988581 8.622638089 7.995683259 8.314377029 8.10749494 7.848700921 8.287070773 8.563214021 8.219867537 8.299903493 8.081208548 118593746 atzB Organic Remediation Herbicides related compound Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 7.798481442 8.213786591 6.960381124 6.77121229 7.259673659 7.486141716 167463218 ahpF Stress Oxygen stress Paenibacillus larvae subsp. larvae BRL-230010 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus larvae; 7.34491451 7.652187799 7.635306017 7.147216606 7.301823331 7.989247145 7.911056239 254450503 hrcA Stress Heat shock Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 7.66400725 7.507937674 7.643884031 7.253308435 7.307676338 7.831073533 7.146521204 7.688050242 7.076285321 155029073 gyrB other category gyrB Amphibacillus sediminis 7.062398138 7.262429871 16124702 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 7.42394911 7.446515018 7.765265515 7.375783238 7.335852992 7.64384317 7.325793571 3142156 scnABC Organic Remediation Others Thiobacillus thioparus superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 8.276913274 8.27835147 7.660975695 8.476464135 8.334747185 8.372335416 8.6052913 8.425510396 8.29601598 8.553413762 8.306869126 270041911 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia odorifera; 8.238528223 8.039134669 7.983826857 7.934122304 7.96545947 7.910413084 7.974810803 8.22442047 8.064267629 8.092684087 7.872190814 76056961 narG Nitrogen Denitrification uncultured bacterium 7.623525082 7.59833182 7.736208491 7.362783612 7.375581119 8.345973613 7.498042638 7.282454785 7.491502981 229222224 AceB Carbon cycling Carbon degradation others Nakamurella multipartita DSM 44233 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 7.046525982 7.445722106 7.216729766 7.808988255 163763774 glnR Stress Nitrogen limitation Bacillus selenitireducens MLS10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus selenitireducens; 8.257996828 8.206238402 7.815481577 7.75346335 7.860958684 7.638844128 8.198861587 8.060819117 8.012229602 7.566699899 84687883 glnA Stress Nitrogen limitation Rhodobacterales bacterium HTCC2654 8.204885944 8.078544736 8.104750349 8.242006074 8.093346983 8.248863419 8.144347397 8.492050042 8.251903045 119536246 narI Stress Oxygen limitation Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.665339137 8.445245034 8.361465525 8.597078628 8.502147901 8.709773118 8.489382545 8.449181211 8.225436713 20906878 CODH Carbon cycling Carbon fixation Methanosarcina mazei Go1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina mazei; 8.476939981 8.652319123 8.439653955 8.555739383 8.287919136 8.494875896 8.814110535 8.601992655 8.603255812 8.495062251 8.564025366 238497475 ABC_antibiotic_transporter Antibiotic resistance transporter Aspergillus flavus NRRL3357 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus flavus; 7.507548817 7.554271631 7.623805694 7.472355315 7.856752918 7.811938752 7.312883117 7.760955956 86357210 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.10192035 8.084869173 7.878148066 7.834023739 7.862850339 8.470660263 8.261870288 8.771590173 8.048002594 8.130705634 8.204555997 13940416 tomA Organic Remediation Aromatics BTEX and related aromatics Pseudomonas sp. OX1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.752748108 8.505778454 8.7854098 8.660880321 8.188544691 8.069708111 8.204541289 8.416848664 116634771 narG Nitrogen Denitrification uncultured bacterium 7.527232339 7.3829717 7.530315828 7.104495602 7.472971393 7.39777914 7.415276692 7.295843038 7.437556134 151365977 SMR_antibiotics Antibiotic resistance transporter Shewanella baltica OS185 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 7.733458213 6.926440553 6.924999536 7.016206742 83017290 gyrB other category gyrB Microbulbifer sp. MBIC06108 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Microbulbifer; 7.977067763 7.954210386 8.052958379 7.74850143 7.945961247 7.754860271 8.062823665 7.858831262 7.960176648 8.049738313 7.80738572 527550 pheA Organic Remediation Aromatics Other aromatics Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.284266503 8.63523095 8.216228775 8.002881757 7.682875856 8.096946075 8.167461844 8.095787976 8.205269514 8.200050227 8.339616312 68345575 MFS_antibiotic Antibiotic resistance transporter Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.012697297 8.47203246 7.341078487 7.49913751 7.830810575 7.519773881 7.35328063 7.768826745 7.60869306 7.782094676 7.739990768 187934244 exochitinase Carbon cycling Carbon degradation Chitin Clostridium botulinum B str. Eklund 17B superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium botulinum; 7.783058191 8.081750149 7.39099657 7.069621967 6.974942381 7.53044435 83374897 CopA Metal Resistance Copper Rhodobacter sphaeroides ATCC 17029 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 7.664730327 7.945868606 8.2330739 7.439489028 8.01484514 7.600115046 7.660921174 7.859811259 218750828 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 10.21901789 8.09899251 7.252822248 6.986925993 7.72015933 7.508509751 7.214352328 7.940984114 7.505873417 7.335533158 7.346265454 151575112 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.10293807 8.043816113 7.592990575 7.969454364 8.027138863 8.09825979 8.054427611 7.894586151 7.446329746 229327078 AceB Carbon cycling Carbon degradation others Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 7.258751456 7.168163225 221737890 ara Carbon cycling Carbon degradation Hemicellulose Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 7.32068105 7.57164034 7.612277001 7.305240842 7.525524954 7.801338596 7.567754556 7.390689356 7.529657557 156933701 narI Stress Oxygen limitation Enterobacter sakazakii ATCC BAA-894 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 7.776261081 7.540118811 7.535713472 7.505967547 7.756578331 8.080933258 8.71415655 7.342938613 7.653401929 114553594 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Mariprofundus ferrooxydans PV-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Zetaproteobacteria;order:Mariprofundales;family:Mariprofundaceae;genus:Mariprofundus;species:Mariprofundus ferrooxydans; 8.314508278 8.268096531 7.903723815 7.822511247 7.8410113 7.383990654 7.196801835 7.53585786 7.451455956 7.566671789 142852071 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 7.533501499 7.556355079 8.162905666 7.59108193 7.480646293 7.418909834 206677247 vdh Carbon cycling Carbon degradation Others Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.468683079 8.342826991 7.766929667 7.767419912 7.778970896 7.417536393 7.66908754 7.704695548 7.635612518 7.638783436 8.041395046 237684292 pstB Stress Phosphate limitation Teredinibacter turnerae T7901 6.648325381 7.43774433 194682924 ppk Phosphorus Phosphorus utilization Proteus mirabilis HI4320 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 8.453936009 8.374217379 8.266210018 8.20149896 8.2603368 8.344189457 8.600838423 8.178289069 8.500580196 8.380465773 8.242019253 194473820 helicase_family_4 Bacteria phage REPLICATION Morganella phage MmP1 7.825924779 8.084424186 7.301977951 7.178775801 6.625309386 7.414492823 27350589 pcaG Organic Remediation Aromatics Other aromatics Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.448153879 8.105973874 7.888489002 7.674832933 7.934481776 8.088150155 7.618633282 8.234247874 7.80076736 7.772276746 7.852890914 220912832 CadA Metal Resistance Cadmium Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 7.754321385 7.701592486 8.157123104 8.114609569 7.348630149 7.643521512 256397362 pstC Stress Phosphate limitation Catenulispora acidiphila DSM 44928 7.332342199 7.564321307 8.088534112 8.180905201 7.786872895 7.678606471 7.940728133 7.922763162 126704837 glnA Stress Nitrogen limitation Rhodobacterales bacterium HTCC2150 8.367308506 8.532021221 8.093927674 7.59341626 8.238469173 8.071745238 8.107822671 8.050852836 8.347569065 34223692 phenol_oxidase Carbon cycling Carbon degradation Lignin Climacocystis borealis superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Hapalopilaceae;genus:Climacocystis; 7.982745184 7.950495286 7.353430814 7.154800964 7.449132106 7.305635208 7.128833951 7.088521763 7.323584888 7.500866267 117994649 nicdehydr Organic Remediation Aromatics Heterocyclic aromatics Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 8.81826185 8.866498895 8.907357821 8.9435367 8.761384823 8.793620577 9.093664643 8.696430609 8.899828544 8.750125637 8.776078184 218518405 trzE Organic Remediation Herbicides related compound Acidithiobacillus ferrooxidans ATCC 23270 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 8.354039385 8.492711607 8.064192771 8.034679786 7.896216928 8.216846255 8.219909037 8.011619269 8.278100258 7.760905311 220933197 gyrB other category gyrB Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 8.605426645 8.536040956 7.978170344 8.415908549 8.361228232 8.096698169 8.48191136 8.307062287 7.978027169 220029234 DNA_ligase Bacteria phage REPLICATION Enterobacteria phage JSE order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.921405897 8.186718805 7.970579668 8.172752328 7.986918664 7.425693426 7.987955222 8.054954853 7.853789657 7.671650859 7.969300745 171997774 nhh Organic Remediation Aromatics Nitoaromatics Burkholderia ambifaria MC40-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 7.969875748 8.151112513 7.428135302 7.335955004 7.146569682 7.18985716 7.110208969 7.700310786 7.371489316 7.070916408 7.409134622 77378583 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.2919602 7.563162919 7.725049268 7.226836198 7.43835063 7.774531888 7.350506714 7.24449363 16604298 pcpC Organic Remediation Herbicides related compound Sphingomonas sp. UG30 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 7.445553619 7.588988931 7.860561742 7.768608201 7.656256041 8.076278012 7.520707995 7.917189609 7.922943464 159181630 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 7.39373808 7.35865904 7.82522159 7.070980556 7.268525389 7.249973664 89332531 narI Stress Oxygen limitation Desulfitobacterium hafniense Y51 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 7.812646995 7.481324209 7.500113712 7.478775131 7.565934161 7.885731324 7.602003185 7.441842643 7.287463999 251841300 Mex Antibiotic resistance transporter Bacteroides sp. 1_1_6 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 8.097211526 8.137457985 7.526399253 7.797340288 8.27095015 8.343789989 7.58631232 8.384411764 7.673057197 7.804641183 8.030706717 120596613 phtA Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8.21322131 8.110122084 7.744467134 7.606406447 8.113106502 8.276785485 7.738950865 8.492510363 7.823358807 7.59355295 7.852058233 237784954 clpC Stress Protein stress Corynebacterium kroppenstedtii DSM 44385 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium kroppenstedtii; 8.306040562 8.441333425 7.85385968 8.155484344 8.260214601 8.040835936 8.301380902 8.20656316 8.250042092 8.254089966 8.211366189 118715018 atzC Organic Remediation Herbicides related compound Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 8.114244408 8.043705961 7.947069642 8.00886899 8.249519321 8.301143107 8.240195278 8.087027394 8.105828607 145014443 nagG Organic Remediation Aromatics Aromatic carboxylic acid Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 8.172946117 8.17577603 7.593398483 7.571665725 8.007251245 7.784329501 7.804946389 7.885040477 8.027589703 7.993890417 146406890 nmoA Organic Remediation Aromatics Nitoaromatics Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.81070101 7.743030245 7.848926483 8.324979171 7.821942507 116668991 pimF Organic Remediation Aromatics Aromatic carboxylic acid Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.848617495 7.689387594 7.696108276 7.521144089 7.17534487 7.999959881 7.60125906 7.809078373 7.657935511 260939052 GroES Stress Heat shock Vibrio orientalis CIP 102891 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 7.076325927 6.93107765 15142791 xylanase Carbon cycling Carbon degradation Hemicellulose Escherichia coli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 8.51511606 8.328139063 8.036900367 7.424794556 8.318300451 8.020594314 7.867376891 8.285923733 146153858 Catechol Organic Remediation Aromatics Other aromatics Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 8.165905042 8.063958594 7.72799104 7.729681774 7.662072317 7.639565501 7.459432026 7.590227176 7.541898321 7.829886811 73534026 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.219199413 7.496703729 7.08051018 7.274965831 7.076406275 7.371949217 88921541 fcbA Organic Remediation Aromatics Chlorinated aromatics Acidiphilium cryptum JF-5 7.854231781 8.316444034 8.269557581 7.695393818 8.554038434 8.055524699 8.141915803 8.243141381 92431948 phdJ Organic Remediation Aromatics Polycyclic aromatics Mycobacterium sp. JLS 7.746591232 8.125417451 8.138789482 8.252853858 7.912433598 8.313537832 7.947195047 7.745293386 8.294320116 88643212 dsrB Sulphur sulfite reductase Desulfohalobiaceae bacterium Benz superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae; 8.34961513 8.383906558 8.694110777 8.29794747 8.422883648 8.350318276 8.969094753 8.124945431 8.550354463 8.609024461 8.053771231 226188362 bphF1 Organic Remediation Aromatics Polycyclic aromatics Rhodococcus erythropolis PR4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 8.88165306 8.79464504 8.685579699 8.492351693 8.830562619 8.369695065 8.523655548 8.758516982 8.230694302 94984767 amyA Carbon cycling Carbon degradation Starch Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 6.998414104 7.480699083 7.731882973 7.111802279 7.586628104 7.785342931 7.761842877 46981124 nirS Nitrogen Denitrification Bacillus sp. R22 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.405489165 7.228507406 7.411557475 7.534992619 94731170 atzA Organic Remediation Herbicides related compound Lawsonia intracellularis PHE/MN1-00 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Lawsonia;species:Lawsonia intracellularis; 7.660467395 8.101670922 91692308 rubisco Carbon cycling Carbon fixation Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.889215021 8.577972333 8.404128925 8.346484405 8.250651135 8.438464417 8.734139509 8.181269965 85091578 phenol_oxidase Carbon cycling Carbon degradation Lignin Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 8.844967512 9.017036974 7.835204692 7.841700666 7.671793307 7.16343899 7.443658459 7.817181713 7.72971568 8.179048752 62003585 narG Nitrogen Denitrification uncultured bacterium 10.42165201 10.41693424 8.57685903 8.428551825 8.477626992 8.654953702 8.561820583 8.85199621 9.022523607 8.874659564 8.652372746 189198674 AceA Carbon cycling Carbon degradation others Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 8.082672281 7.924017945 8.012060819 7.494030157 7.755137587 7.850662886 7.900492603 7.892755442 7.499061904 62865970 gyrB other category gyrB Borrelia parkeri superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Spirochaetaceae;genus:Borrelia; 7.999098975 8.21375305 7.236216585 7.174314013 7.272053697 6.819386068 6.728268963 7.615294549 7.126063212 7.026515271 238024172 AceB Carbon cycling Carbon degradation others Burkholderia glumae BGR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia glumae; 7.483993283 7.629078057 7.527105124 7.712828284 7.426255959 7.752083069 7.197869923 7.632103107 7.361406836 119462278 phtA Organic Remediation Aromatics Aromatic carboxylic acid Nodularia spumigena CCY9414 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nodularia;species:Nodularia spumigena; 7.023631699 7.287842221 7.129255392 6.831963504 7.153322725 7.733623191 51857159 dmsA Organic Remediation Others Symbiobacterium thermophilum IAM 14863 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVIII. Incertae Sedis;genus:Symbiobacterium;species:Symbiobacterium thermophilum; 7.851434332 7.483638348 7.760236457 7.208153235 8.08178707 7.746430166 8.09074981 7.615475864 179345576 amyA Carbon cycling Carbon degradation Starch Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 8.181716139 8.064283062 8.100304365 8.107640624 7.934321703 8.044167212 7.849317808 8.36129854 7.774713395 7.803118038 46849523 aclB Carbon cycling Carbon fixation Hydrogenobacter thermophilus superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenobacter; 8.302938533 8.348560298 8.497836381 7.942164512 8.638462826 8.28621151 8.551721172 8.435259939 241366008 fnr Stress Oxygen stress Acidovorax delafieldii 2AN 7.211576564 7.315794883 8.009986829 8.109501148 7.540116198 7.569262102 7.315528613 8.035694188 170293799 MFS_antibiotic Antibiotic resistance transporter Thauera sp. E7 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 8.489431661 8.387895025 8.17811384 8.678936917 8.609479399 8.197409691 8.420893428 8.066624257 8.572593304 262352221 pilin virulence pilin Vibrio sp. RC586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.813279391 8.565113312 8.726841671 8.737347697 8.70671467 8.568299784 9.026416271 8.571997967 8.709568938 8.608602122 8.617785816 99030515 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 7.976464617 8.133506665 8.344291995 7.807598038 7.604696648 7.833156573 7.985291789 8.220040105 7.534362701 7.525194313 7.366396212 84509799 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 7.248155466 7.042900631 7.240991569 7.248759642 7.134483751 7.21355418 7.421089456 77359534 SilA Metal Resistance Silver Pseudoalteromonas haloplanktis TAC125 8.138122947 8.527504016 7.93014789 8.409849309 8.013202269 8.010245568 8.465492924 73748035 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. CBDB1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.090173628 6.855636277 91693037 alkK Organic Remediation Others Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.355971768 7.871213396 8.160839151 7.496364301 7.567502022 7.502323809 90588147 amyA Carbon cycling Carbon degradation Starch Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 7.18089211 7.015194218 7.019828624 116695678 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 7.491547722 7.317989649 7.161352829 6.588846186 7.670313858 7.277217123 7.258980723 7.527045549 124021877 sigma_70 Stress Sigma factors Prochlorococcus marinus str. MIT 9303 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 7.574946709 7.552082502 7.50359017 7.350725404 7.147581944 7.72025481 7.292781372 7.333904545 7.547723173 189349821 merP Metal Resistance Mercury Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 7.495379493 7.437492839 7.301418694 7.40755524 7.197073721 7.722495379 7.45203073 7.420010732 154253882 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 7.975927372 7.713151078 7.831276238 7.779729646 7.583065131 93352906 phdCI Organic Remediation Aromatics Polycyclic aromatics Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.208435323 8.173244591 7.925311112 8.076936649 8.416087943 8.133165121 8.348473043 8.24326498 8.27794148 77378429 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.271310364 7.316788696 7.130191306 7.672392863 7.375273767 7.195118516 7.472136545 58003211 vanA Carbon cycling Carbon degradation Others Gluconobacter oxydans 621H 7.794942509 7.801720684 7.773352931 8.197592441 8.243580958 8.561752799 8.485093307 8.147990588 256363045 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 8.25031481 8.395312189 7.888554736 7.56423701 8.300810492 7.773255596 7.696283977 7.880465561 8.200809818 7.981482817 8.276430284 169595428 phoA Stress Phosphate limitation Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 8.165540168 8.371128991 7.643467091 7.437566023 7.774836809 7.584227855 7.506534772 7.713683716 7.48643089 7.575787408 7.712115742 254354919 ahpC Stress Oxygen stress Legionella drancourtii LLAP12 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella;species:Legionella drancourtii; 8.045098814 8.18391371 7.378571941 7.464096036 7.127272115 7.172918747 7.046800929 7.871222482 7.34285589 7.184764239 7.401691154 218143150 mer Metal Resistance Mercury Desulfovibrio salexigens DSM 2638 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio salexigens; 7.86878549 7.657644268 7.491654126 7.161731873 7.807826004 8.03718239 7.708115893 7.780090416 195931889 Catechol Organic Remediation Aromatics Other aromatics Gordonia terrae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 7.296976215 7.910155287 7.794828451 7.407876729 7.427308497 7.436873294 7.669817212 111613425 ophC Organic Remediation Aromatics Aromatic carboxylic acid Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 7.396469059 7.580980998 7.265268623 7.975799734 7.63773434 7.582613679 7.844917971 7.9037255 119961497 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 8.010120279 8.379551899 7.638353145 7.702665592 8.113830738 6.874723263 8.203600962 7.549415196 7.534640519 162281563 pcaG Organic Remediation Aromatics Other aromatics Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 8.736559098 8.714742066 8.621309248 8.764102643 8.681997844 8.644802533 8.609767461 8.478881239 8.085602196 57335474 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.724047831 8.270233715 8.346699653 8.444739338 8.570389606 8.620049746 8.717335329 8.605524629 8.399053782 41397309 limEH Carbon cycling Carbon degradation Others Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 7.893579009 7.769570534 7.841021007 7.630436084 8.222241486 7.772709668 7.803592626 7.890392573 8.070103417 27363935 phoB Stress Phosphate limitation Vibrio vulnificus CMCP6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 7.992920542 8.210114957 7.468473681 7.743661391 7.994438302 8.173360667 7.833645632 7.985046903 7.609490735 7.784176441 7.829275633 118470411 pstA Stress Phosphate limitation Mycobacterium smegmatis str. MC2 155 7.610621115 8.145357448 7.976268927 7.993887876 7.417212805 8.036662369 7.863281384 8.073387102 227341055 SMR_antibiotics Antibiotic resistance transporter Rhizobium sp. NGR234 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 7.661941778 7.436950067 7.465112208 6.879058637 7.118411928 7.725706952 7.388311955 7.247568578 15890502 xylA Carbon cycling Carbon degradation Hemicellulose Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.084201326 8.387124911 7.446218969 8.33437751 8.49519905 8.326687258 8.383156817 8.391331849 8.245080709 8.645204318 157311457 contractile_central_tail_tube_protein Bacteria phage STRUCTURAL Enterobacteria phage Phi1 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.721283228 7.878300227 8.275266023 7.934458213 7.718202104 7.762407129 7.956862814 7.817208148 27360914 oxyR Stress Oxygen stress Vibrio vulnificus CMCP6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 8.034107915 8.288730455 7.416951079 7.539081392 7.671881637 7.335115428 7.868273037 7.887716135 7.707470213 7.905164118 8.435353802 118578453 gyrB other category gyrB Pelobacter propionicus DSM 2379 8.65844222 8.323310343 8.02557068 7.707796225 7.693836138 7.408070095 7.5969028 7.957111247 7.980999844 7.890900562 8.17825014 4115621 exochitinase Carbon cycling Carbon degradation Chitin Xanthomonas sp. AK 9.801834888 9.853703748 9.149659646 9.315989812 9.233407282 29899138 akbD Organic Remediation Aromatics BTEX and related aromatics Streptomyces griseochromogenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.285945261 8.334414531 7.97032944 7.814930669 8.373557234 7.974520209 8.552309056 8.057354459 8.312283597 8.386671746 7.696006558 10639454 ferrochelatase Bioleaching Iron oxidation Thermoplasma acidophilum DSM 1728;Thermoplasma acidophilum 7.863423994 8.092302822 7.619475257 7.482223793 7.906959553 8.098371012 8.032407026 7.863778239 7.816715695 7.743421944 50875819 glnA Stress Nitrogen limitation Desulfotalea psychrophila LSv54 8.360919732 8.243292056 7.345034234 7.337744599 7.243428598 6.871616332 7.281403737 7.130821542 7.215985153 7.688874407 84668625 proO Organic Remediation Aromatics Other aromatics Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.006850248 8.073286238 8.703889026 8.532326843 8.286575827 7.941686138 8.419591688 8.319819699 8.303635762 8.147226083 7.90622986 110735261 nrfA Nitrogen Dissimilatory N reduction Mannheimia haemolytica superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Mannheimia; 7.971392344 7.839429215 7.925841891 7.817761256 7.801384127 7.820230052 7.468696947 7.604471916 260620338 sigma_24 Stress Sigma factors Bacteroides finegoldii DSM 17565 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides finegoldii; 8.587088002 8.647392016 7.711874815 7.707524376 7.744850309 7.711951829 7.416048707 7.916163402 7.350720888 7.08344582 7.847943655 108467756 silP Metal Resistance Silver Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 8.560852994 8.192018371 8.462678175 8.773508997 8.446182256 8.44963954 8.417040794 8.094408495 227818333 fnr Stress Oxygen stress Rhizobium sp. NGR234 8.920765938 7.997982883 7.773337952 7.31592093 7.27178279 7.821114259 7.88674736 7.55127275 7.697976796 91682795 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.11009587 9.130433172 8.558856259 8.522905753 8.414250793 8.795213916 8.695558427 8.98655842 8.839100404 8.683817938 8.757717834 262190166 pilin virulence pilin Vibrio cholerae CT 5369-93 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 7.819130855 7.989908796 7.055782586 6.778876796 18461106 phenol_oxidase Carbon cycling Carbon degradation Lignin Lentinula edodes superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Lentinula; 7.339843922 7.643054849 7.697761873 7.434454453 7.341951662 7.667603214 7416787 BchY other category chlorophyllide reductase Rubrivivax gelatinosus superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Rubrivivax; 8.392319656 8.498107488 8.319200603 8.64012718 8.458360941 8.300568315 8.486725034 8.432846534 8.759589781 8.602917539 121495556 narG Nitrogen Denitrification uncultured bacterium 6.726874353 7.450085192 71737195 phn Organic Remediation Herbicides related compound Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 7.469386627 7.838037367 7.807059303 7.872718575 8.024846503 7.701061221 7.640164445 7.487363635 124007607 ahpC Stress Oxygen stress Microscilla marina ATCC 23134 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Microscilla;species:Microscilla marina; 7.124954216 7.186481802 6.611885651 6.699891983 7.327422322 126667713 phn Organic Remediation Herbicides related compound Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 7.915919439 7.777088981 7.824046838 7.795549741 7.801357728 7.716755393 7.863251428 7.70012208 84377327 cap virulence capsule Vibrio splendidus 12B01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 7.719326404 7.608220262 7.542463454 7.653379497 8.034905475 7.709994593 7.507137934 7.901151673 4096595 pcaG Organic Remediation Aromatics Other aromatics Burkholderia gladioli superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.372064673 8.81315681 8.725116755 9.092417386 8.802972771 8.542600132 8.830493951 8.991858253 9.050415641 110799775 fnr Stress Oxygen stress Clostridium perfringens ATCC 13124 8.082595723 8.551846605 7.479232964 7.445790504 7.599983862 7.186814874 6.793102536 7.48295276 7.205878272 7.642556853 133912249 pimF Organic Remediation Aromatics Aromatic carboxylic acid Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 8.328484854 8.338848476 8.33836294 7.744161722 8.428821361 8.027536375 8.113272756 8.264274742 7.83707728 170124950 MFS_antibiotic Antibiotic resistance transporter Escherichia albertii TW07627 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 7.192797323 7.330415633 225175258 clpC Stress Protein stress Dethiobacter alkaliphilus AHT 1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Syntrophomonadaceae;genus:Dethiobacter;species:Dethiobacter alkaliphilus; 8.261362165 8.609704133 8.026816736 7.04667224 8.06025894 7.649201949 7.466180008 7.648913149 7.563758215 7.7934 182634688 CopA Metal Resistance Copper Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 8.242190882 8.072810321 7.528801666 7.324449786 7.718813665 7.696013951 7.37248356 7.951466055 7.289984618 7.437495815 7.640673521 13517009 gyrB other category gyrB marine CFB-group bacterium MBIC04447 superkingdom:Bacteria;phylum:Bacteroidetes; 7.673935181 7.605294635 7.659793131 7.067147722 7.283274766 7.836911125 7.368013838 7.296650315 7.551665895 209551077 CopA Metal Resistance Copper Rhizobium leguminosarum bv. trifolii WSM2304 8.278270397 8.37054462 8.342120452 8.026078759 8.123865654 8.520299871 8.541691788 8.740595791 281414489 hly virulence hemolysin Micrococcus luteus NCTC 2665 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus;species:Micrococcus luteus; 8.256358157 8.517303326 8.371089704 8.238568913 7.819073301 7.967806951 8.487423466 8.427960554 7.920892861 8.344073532 159040073 bphF1 Organic Remediation Aromatics Polycyclic aromatics Salinispora arenicola CNS-205 8.327085089 8.160407718 7.950247186 7.593946815 7.582009328 7.828722476 7.829470414 7.881325529 7.713702628 8.065684385 85833997 atzA Organic Remediation Herbicides related compound Vibrio sp. MED222 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.687741111 7.664999591 8.040501447 7.258854224 7.918759214 7.887459571 7.828505645 7.799404483 7.583974175 71907650 sigma_24 Stress Sigma factors Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 7.802673216 8.185524157 7.403757655 7.249355308 7.458266669 6.898514873 6.98656808 7.697369503 6.980641432 7.245256475 112361523 fcbB Organic Remediation Aromatics Chlorinated aromatics consortium cosmid clone pGZ1 superkingdom:Bacteria; 7.583410231 7.904249807 7.709522934 7.596142118 7.466096897 7.975475697 7.744130474 7.44930246 7.62042499 156933904 SMR_antibiotics Antibiotic resistance transporter Enterobacter sakazakii ATCC BAA-894 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 7.925082614 7.453023313 7.65399976 7.928194436 7.98198485 8.022307961 8.041608896 7.6392654 7.889877515 56910596 pstB Stress Phosphate limitation Bacillus clausii KSM-K16 8.082449636 8.186316917 7.394636398 7.539957629 7.515219149 7.606949324 7.732179667 7.611956529 7.745933612 7.764056968 111025801 akbF Organic Remediation Aromatics BTEX and related aromatics Rhodococcus sp. RHA1 8.206542059 8.493700219 7.605302098 7.706964534 7.986969449 8.413950599 7.638494197 8.165822381 7.750580482 7.828307186 8.149951964 239507340 sigma_24 Stress Sigma factors Kosmotoga olearia TBF 19.5.1 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Kosmotoga;species:Kosmotoga olearia; 7.482490882 7.182730207 6.632384859 6.724419157 7.266650364 119474914 Arylest Organic Remediation Aromatics Other aromatics marine gamma proteobacterium HTCC2143 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.32533899 8.195109878 8.295376184 8.345642571 8.253772988 7.805829159 8.44121885 8.224785958 8.238383025 8.272383209 7.789677589 73748094 pstB Stress Phosphate limitation Dehalococcoides sp. CBDB1 6.961096715 7.894053498 8.217857875 7.809099309 8.020002925 8.472969981 8.119232045 84042969 pcaG Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 8.51833252 8.269740456 7.892416195 8.336457395 8.234248987 8.118966904 8.303948426 8.109534929 7.830583163 262395510 endochitinase Carbon cycling Carbon degradation Chitin Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.509137005 7.616644309 7.634159465 7.214379857 7.544030988 7.804878524 7.698660028 7.274937821 7.655611619 84684655 hrcA Stress Heat shock Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.764079242 9.198972092 8.712065743 8.596726271 8.298982059 8.635952272 8.556852568 8.243267509 8.563731303 8.510111949 8.367842104 219857952 nmoA Organic Remediation Aromatics Nitoaromatics Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 8.209901045 8.237285583 7.546734055 7.523146716 7.90648588 7.995191594 7.581281253 7.750475358 7.784407996 7.737680587 221729431 obgE Stress Radiation stress Diaphorobacter sp. TPSY superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax ebreus; 7.758634943 7.871531462 7.853259884 7.796244526 8.423295916 7.838956826 8.229577263 8.061056308 7.862390404 89340644 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium flavescens PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 7.546246932 7.535484134 7.705014084 7.429162875 7.228613408 7.89072067 7.48453538 7.117623341 7.518639646 111021507 bphF1 Organic Remediation Aromatics Polycyclic aromatics Rhodococcus sp. RHA1 7.509313326 7.285129713 7.548662288 7.70305548 7.903860686 148512466 proO Organic Remediation Aromatics Other aromatics Pseudomonas putida F1 8.409894002 8.232076962 8.259775176 8.320759013 8.478049627 8.339758425 8.444661814 8.73543117 8.569584701 8.627430998 8.258570083 39995808 cytochrome Energy process Energy process Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 7.490496155 7.936462643 7.941931966 7.392307986 8.286619764 8.12518556 7.82655736 7.962085764 116749865 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 8.354961615 8.488008657 7.786128971 7.681100615 7.66964504 8.083980711 7.460736994 7.620019149 7.831411182 7.744100274 153004418 sigma_24 Stress Sigma factors Anaeromyxobacter sp. Fw109-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 8.309913058 8.028308124 8.227406925 7.899855763 7.95382523 7.721328933 7.727507464 7.693905472 39647613 phn Organic Remediation Herbicides related compound Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.650197688 8.42788788 8.672046795 9.008064073 9.070359813 8.766205211 9.306121162 9.384448634 9.20318007 187477563 ahpC Stress Oxygen stress Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 8.687529874 8.6725231 8.200151357 8.365479659 8.625650515 7.286633273 7.916700487 8.069869714 113953367 nirA Nitrogen Assimilatory N reduction Synechococcus sp. CC9311 8.47326849 8.458171213 8.156256375 8.005105866 7.406233302 7.728303551 7.580258309 7.390994789 7.967628023 167592521 CopA Metal Resistance Copper Heliobacterium modesticaldum Ice1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Heliobacteriaceae;genus:Heliobacterium;species:Heliobacterium modesticaldum; 7.495280048 7.719747761 7.65205422 46912654 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Photobacterium profundum SS9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 8.381381919 8.447446493 7.961979851 7.69331064 7.758264533 7.675477272 7.524227865 7.834077406 7.693764268 7.357442667 8.002814564 220933229 sox Sulphur Sulphur oxidation Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 8.255313966 8.330226354 8.443063636 8.424679773 8.230265885 8.32294797 8.698353089 8.584360823 8.406226212 8.0146686 237825468 phenol_oxidase Carbon cycling Carbon degradation Lignin Clavariopsis aquatica superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Microascales;family:Halosphaeriaceae;genus:Clavariopsis; 7.85912237 7.500739713 7.670757742 7.642712199 7.634874406 7.943550633 7.507561037 7.607149498 7.772100742 54016100 linB Organic Remediation Pesticides related compound Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 7.512784076 7.488644356 7.667856869 6.937563886 6.942995462 7.675855001 7.416034279 7.489726132 7.618394749 83757059 ppx Phosphorus Phosphorus utilization Salinibacter ruber DSM 13855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 8.129504998 7.733462927 7.462005528 7.566853608 7.799983432 7.477793599 7.353068592 7.613026328 46307860 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.027963816 7.311498894 7.47969739 7.578599212 7.195901073 7.924151313 7.316644963 6.994611744 7.669152693 283951754 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Acidaminococcus;species:Acidaminococcus fermentans; 7.993690659 8.291887297 7.685153191 7.61471462 7.511098959 7.365535645 7.387159736 7.989494697 7.399941293 7.221093815 7.459917856 71006620 ara_fungi Carbon cycling Carbon degradation Hemicellulose Ustilago maydis 521 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Ustilaginomycetes;order:Ustilaginales;family:Ustilaginaceae;genus:Ustilago;species:Ustilago maydis; 7.50667593 7.263143441 7.10492143 7.153909532 7.386120506 7.282217625 7.453993179 146195508 AmiE Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.489721019 7.717486706 7.909664841 7.917375089 7.796857867 8.029355848 7.689253557 7.781054489 7.726390472 197298910 ChrA Metal Resistance Chromium Ruminococcus lactaris ATCC 29176 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus lactaris; 7.794434894 7.571499029 7.537581695 7.616228074 7.977712629 7.994480882 7.996970102 7.572106791 7.546061073 247537099 sigma_38 Stress Sigma factors Dickeya zeae Ech1591 7.540541164 7.638277981 7.494008283 7.289743266 7.124763917 7.587479809 7.608170847 7.328139754 170724160 sdsA Organic Remediation Others Pseudomonas putida W619 8.302211191 8.618390041 7.677949579 7.872708751 7.768223499 7.735997913 7.981430807 7.92847832 8.114212712 7.900340765 7.894456578 192287017 fnr Stress Oxygen stress Rhodopseudomonas palustris TIE-1 8.399930605 8.484648024 8.234102823 8.40640689 8.487267834 8.687142139 8.780247347 8.701277511 8.812144073 8.733220146 8.687538749 73535252 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.561418101 7.33063778 7.325023262 7.252658361 6.97868075 7.687671692 7.559379623 7.319962805 7.418822304 260651899 sigma_24 Stress Sigma factors Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 8.246770392 8.35836013 8.133738665 8.122535825 7.928880748 8.229231927 7.984052273 8.715057793 7.75931039 7.966461813 7.991104958 212668297 ChrA Metal Resistance Chromium Bacteroides finegoldii DSM 17565 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides finegoldii; 7.055147024 7.069539309 7.110940064 6.93860644 7.521047695 220696715 ara_fungi Carbon cycling Carbon degradation Hemicellulose Aspergillus flavus NRRL3357 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus flavus; 7.02044276 7.212614088 253826195 sigma_24 Stress Sigma factors uncultured bacterium L11E10 superkingdom:Bacteria; 8.853342385 9.530298231 8.224300815 8.866766184 8.932266788 8.084100079 9.567065189 145243986 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.589143692 7.863712894 8.151103105 8.429843605 8.036545545 8.02954475 7.646736115 7.727257447 7.839729545 142327 nifH Nitrogen Nitrogen fixation superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter; 7.859662419 8.026170967 7.513618749 7.502370836 7.424757001 7.042098586 7.200254771 7.632743487 7.269876991 7.25906798 7.523975227 213926417 MFS_antibiotic Antibiotic resistance transporter Pseudomonas syringae pv. tomato T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 8.109881985 8.380346795 8.38033198 8.252758551 7.674488313 7.997696752 7.838447859 8.269266333 8.414555861 7.752122233 94310275 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.870299973 8.749416797 8.411504275 8.054536911 8.168810455 8.516030318 8.59023915 8.493044278 8.501401174 8.454350865 8.544849548 167359267 ArsC Metal Resistance Arsenic Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.040494959 8.200197029 7.691929531 7.848446856 7.724295055 7.967209224 8.271507497 8.278838421 8.040300422 8.137728711 145964727 endochitinase Carbon cycling Carbon degradation Chitin Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 7.413486541 7.236611043 7.698254929 7.693304347 7.554894411 7.49542988 7.611403735 225637770 narH Stress Oxygen limitation Marinobacter hydrocarbonoclasticus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 7.349316509 7.353339437 7.519209443 7.287341838 111223995 TerC Metal Resistance Tellurium Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 8.408526199 8.311043265 8.274712062 8.234251416 8.683670047 8.432447101 8.699414958 8.532141919 8.685116153 126736929 dehH109 Organic Remediation Chlorinated solvents Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.010636236 8.20245975 7.828157302 7.605814844 7.633690989 7.27707752 7.113445689 7.938223997 7.35664784 7.072116022 7.516186983 124007002 gdh Nitrogen Ammonification Microscilla marina ATCC 23134 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Microscilla;species:Microscilla marina; 8.307149835 8.386250784 8.565237783 8.513401969 8.503737671 8.59766041 8.851682618 8.29387017 8.859704299 8.690701915 8.312132273 189458761 linD Organic Remediation Pesticides related compound uncultured bacterium superkingdom:Bacteria; 8.074202517 7.977008875 7.595387818 7.840294462 8.011616383 7.920351772 7.913360779 8.14774975 8.089495306 7.801405036 7.910954213 46308012 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.074581274 8.280914558 7.383325237 7.418409091 8.004137546 7.467379388 7.478049599 7.847560189 167769938 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Anaerotruncus colihominis DSM 17241 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Anaerotruncus;species:Anaerotruncus colihominis; 8.150902732 8.366334583 7.933651283 7.923901628 7.975791048 7.996043549 8.093557697 7.814078254 8.265749485 8.033000047 134093787 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Herminiimonas arsenicoxydans 8.008478561 7.340398108 8.161570364 7.192031961 7.885703586 156741487 phoB Stress Phosphate limitation Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 8.100281449 7.991947394 8.371747673 8.344080272 8.070900797 8.111207594 8.008729467 8.228569481 7.892669609 7.800430323 8.04582691 120606344 fnr Stress Oxygen stress Acidovorax sp. JS42 7.458962934 7.540985201 7.26699444 7.269307289 7.129390031 7.68422184 7.150398578 7.049295726 7.170026989 114797381 pstC Stress Phosphate limitation Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 7.575254968 7.771931287 8.016928228 8.295043522 7.292020862 8.501081875 7.531940259 7.526915057 7.744003458 151936883 gyrB other category gyrB Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 6.978600757 6.770513639 7.132892933 219871877 napA Nitrogen Dissimilatory N reduction Haemophilus parasuis SH0165 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus parasuis; 7.206642197 6.978695283 6.901611309 6.825864507 187715278 nmoA Organic Remediation Aromatics Nitoaromatics Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8.169851577 8.156462814 7.888151982 8.063582414 8.099863754 8.423974249 8.104386331 7.981723417 114797464 sox Sulphur Sulphur oxidation Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 7.442694556 7.673178601 8.166892375 8.078128125 7.773835949 8.119150883 7.582097797 7.669268909 7.975158643 85083321 phenol_oxidase Carbon cycling Carbon degradation Lignin Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 8.006782756 8.302761436 7.98358024 7.879294231 7.695773628 7.435533326 7.767537205 7.589283433 7.730150872 7.343889116 148240971 CopA Metal Resistance Copper Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.87307905 8.473802286 8.494937753 8.87684619 7.558137692 8.723437552 7.814213006 7.818766961 8.466032729 54025831 TerC Metal Resistance Tellurium Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 8.221938545 8.111934646 8.296320696 7.571588882 8.038703793 7.919188108 8.022968093 8.044939509 7.3338271 83942434 phoB Stress Phosphate limitation Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 7.977056184 8.251610822 7.63742674 7.719869717 7.893190037 8.13895228 8.154318399 8.228512405 7.816805358 7.769447408 154675 F1F0_ATP_synthase Bioleaching other category Acidithiobacillus ferrooxidans 7.019062158 7.422877953 7.575007454 7.365906232 7.454854591 7.637593014 256848544 pstC Stress Phosphate limitation Lactobacillus coleohominis 101-4-CHN superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus coleohominis; 7.83212343 7.954311777 158304613 nhh Organic Remediation Aromatics Nitoaromatics Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;genus:Acaryochloris;species:Acaryochloris marina; 7.320126809 7.42611624 7.326164453 6.759482394 7.678223353 7.361707778 7.078692989 7.265375301 126013262 mcrA Carbon cycling Methane Methane production uncultured archaeon superkingdom:Archaea; 8.24557429 8.018811153 7.922747279 8.008019735 7.693965126 8.038690265 7.74103593 8.251716374 7.592634774 7.756964629 7.898924335 254526187 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 7.483499688 7.242513008 7.326614017 7.011544269 6.676874528 7.484173538 7.181649132 7.071540009 7.425238308 73541847 ppx Phosphorus Phosphorus utilization Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.305713244 8.421769494 8.344683068 8.830234499 8.110015876 8.866815785 7.95743613 7.926179064 8.646487445 227092100 pcc Carbon cycling Carbon fixation Corynebacterium glucuronolyticum ATCC 51867 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glucuronolyticum; 8.093647228 8.280287447 7.175767841 7.484618816 7.656646716 7.420482747 7.328275067 7.333259919 7.65677627 7.436541438 91800289 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 8.078601758 8.474480529 8.421291495 8.203860271 7.875386698 8.091509186 8.372404044 8.343270661 8.256520198 8.107254196 8.097994936 219851668 atzA Organic Remediation Herbicides related compound Candidatus Methanosphaerula palustris E1-9c superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;genus:Methanosphaerula;species:Methanosphaerula palustris; 8.139266357 7.993375043 8.063106038 7.64345894 8.279457574 8.105451557 7.84202399 7.807279918 213923516 pbrT Metal Resistance Lead Pseudomonas syringae pv. tomato T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 7.53524207 7.517298796 7.439361227 7.420769362 7.592515837 7.500851434 7.171621781 7.208712474 16264406 fnr Stress Oxygen stress Sinorhizobium meliloti 1021 6.991120786 7.156813413 6.882672088 6.976100299 23100123 pimF Organic Remediation Aromatics Aromatic carboxylic acid Oceanobacillus iheyensis HTE831 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Oceanobacillus;species:Oceanobacillus iheyensis; 7.643336589 7.57844013 7.758499768 7.692167759 7.27922074 7.8409394 7.77727005 7.859621922 156933757 tutFDG Organic Remediation Aromatics BTEX and related aromatics Enterobacter sakazakii ATCC BAA-894 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 8.17219056 8.169335157 8.268127344 8.280012152 8.350242671 8.387971946 8.33111623 8.615433049 8.19546831 257473134 sigma_70 Stress Sigma factors Atopobium parvulum DSM 20469 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Atopobium;species:Atopobium parvulum; 7.217339161 6.994536119 62130022 ppx Phosphorus Phosphorus utilization Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 6.940542288 6.890094815 7.14969421 6.901095642 7.050232116 170525335 tfdA Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 7.882507084 8.217355763 8.393481291 8.138817222 8.031896205 8.045649129 8.08892924 8.203862776 8.043390094 7.824464197 7.989185276 119774547 pstB Stress Phosphate limitation Shewanella amazonensis SB2B 7.397170388 7.076303402 7.564641418 7.206917522 7.459609477 7.275791586 7.148836923 119715618 ChrA Metal Resistance Chromium Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.326878561 8.251559512 8.050618329 8.411391374 8.559791811 8.699099142 8.406894845 8.305122641 71732177 linB Organic Remediation Pesticides related compound Xylella fastidiosa Ann-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xylella;species:Xylella fastidiosa; 7.883360907 7.542733521 7.378044166 7.678603793 7.440576496 7.72672408 84694682 ppx Phosphorus Phosphorus utilization Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8.84502108 8.730275687 8.767292513 8.68489855 8.670077341 8.747588389 8.829542999 8.692615286 8.799188576 8.783910838 8.631805214 148257351 ChrA Metal Resistance Chromium Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.228083358 7.430063489 7.42469444 7.027926295 6.994677725 254379535 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces sp. SPB74 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.214836913 8.223647028 7.8268259 8.028484264 8.009394639 8.22880377 8.155678922 8.003162466 7.960183329 227076131 obgE Stress Radiation stress Corynebacterium accolens ATCC 49725 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium accolens; 7.769521899 8.430673008 8.048888063 8.055658636 7.811351282 7.958068926 8.202993766 8.281760142 258574793 endochitinase Carbon cycling Carbon degradation Chitin Uncinocarpus reesii 1704 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 7.868983684 7.893385272 7.781527994 7.702092384 7.840870496 7.872853635 7.724067932 7.681430842 116013378 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.519114934 7.745707724 7.639472486 7.963835162 7.689092776 7.643487387 7.968751926 7.555442142 76582371 fnr Stress Oxygen stress Burkholderia pseudomallei 1710b 7.986710195 7.952943647 8.014997046 7.810827044 7.904020117 8.650932339 7.942794827 7.927797204 8.163880128 66801859 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 8.212110017 8.310080721 8.590545071 7.776234531 8.460598548 8.188797663 8.604127794 8.672675854 7.954027616 197710279 CopA Metal Resistance Copper Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 7.745709853 7.60162722 8.240211521 8.576974971 7.732906323 8.534489685 7.816246812 7.718388106 8.263818461 119670550 pheA Organic Remediation Aromatics Other aromatics Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 7.706477776 7.543129593 7.42366649 7.578641405 7.696992653 163930320 amoA Nitrogen Nitrification superkingdom:Archaea; 7.808454639 8.086596359 6.87863234 6.975570195 91807184 nosZ Nitrogen Denitrification uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 7.976009817 8.018849845 7.701885115 7.983251759 8.197351902 8.082935146 8.227869779 8.077535938 7.707886318 144899429 MATE_antibiotic Antibiotic resistance transporter Magnetospirillum gryphiswaldense MSR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 8.19692753 8.330176637 8.052006095 8.342313916 7.94462257 7.721923053 8.25120499 8.101234129 8.0636659 7.875137395 8.170599875 81300049 NiR Nitrogen Assimilatory N reduction Synechococcus elongatus PCC 7942 8.276939054 8.283981577 7.446234525 7.816709136 7.779996888 7.736814165 7.829995073 8.097388719 7.649877955 7.964441082 7.820399243 119773739 arcA Stress Oxygen limitation Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 8.295138598 8.415265361 8.265296794 8.333382033 8.252786941 8.483932657 8.42200016 8.442292872 8.335344255 39995723 cytochrome Energy process Energy process Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 7.914541515 8.158838914 7.513985143 7.389558611 7.701568807 7.924956984 7.496632977 7.640657526 7.498602431 7.87274097 29893215 alkJ Organic Remediation Other Hydrocarbons Rhodococcus sp. DS7 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.395529637 8.103512915 7.713749579 8.028354712 8.100647216 8.359132973 8.155418918 7.939142699 7.777406656 159898943 cellobiase Carbon cycling Carbon degradation Cellulose Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 6.908731497 7.339744555 260216308 cydA Stress Oxygen limitation Cronobacter turicensis z3032 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter turicensis; 7.46860138 7.841052947 7.322084121 7.650879829 7.644214911 169623632 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 7.123827178 7.004359566 7.395296244 7.25018662 7.294541255 7.732671945 7.424012187 7.813603854 117648288 exoglucanase Carbon cycling Carbon degradation Cellulose Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 9.267732465 9.165573368 9.033908423 8.994121478 8.828837058 9.173070168 9.233201037 9.27349312 254516193 sox Sulphur Sulphur oxidation gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.204320341 7.757156861 7.84347506 7.515184732 6.670266787 7.940020489 7.390725797 7.219127644 7.424451204 192797448 atzA Organic Remediation Herbicides related compound Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.170588662 8.167185306 7.806554291 8.093967726 8.255256768 8.335885947 8.054495406 8.207309458 7.892709639 8.323061631 7.87005627 270278864 sigma_70 Stress Sigma factors Streptococcus sp. M143 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 7.216299509 7.151877256 6.971259358 6.977429522 261409554 ctsR Stress Protein stress Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.869240238 8.189756436 7.085984989 6.991706316 7.148161477 7.598899801 7.077884853 7.372195446 196193825 CopA Metal Resistance Copper Alcanivorax sp. DG881 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 7.569211243 7.644542688 7.323846286 7.853889891 7.673968805 7.9846613 7.832040541 7.707340713 13473356 hly virulence hemolysin Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 8.377722173 8.335750637 8.565329264 8.564048508 8.263182315 8.598548255 8.431746691 8.131714201 8.203568903 8.413411061 7.917594114 163867519 CorC Metal Resistance Cobalt Bartonella tribocorum CIP 105476 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella tribocorum; 7.537212369 7.425702516 7.836193495 7.756623921 7.613260727 7.925851489 7.861760964 7.848642048 7.815871609 227162743 pap virulence adhesin Proteus mirabilis ATCC 29906 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 9.081790914 9.387423966 8.659424937 8.282413095 8.538873964 8.169123218 8.326633231 8.204432607 8.248629538 8.767089874 170676318 single_strand_annealing_protein Bacteria phage REPLICATION Salmonella phage E1 order:Caudovirales;family:Siphoviridae; 8.005173583 7.806956561 7.680629433 8.162766656 7.845055356 8.102161709 7.996055632 7.933162861 7.92626303 227452492 ctsR Stress Protein stress Geobacillus stearothermophilus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.239231873 7.261371394 7.508541124 7.622602031 6.804125641 7.252601242 7.094897863 7.522252153 120593385 pstB Stress Phosphate limitation Polaromonas naphthalenivorans CJ2 7.834507815 8.269735664 8.211860448 8.198502019 7.268844493 8.431075367 7.638060694 7.866707554 7.733145212 39575866 alkB Organic Remediation Other Hydrocarbons Bdellovibrio bacteriovorus HD100 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 8.317515592 8.431072333 7.87386987 8.22277706 7.867655332 7.909511409 7.726585524 29829851 TerD Metal Resistance Tellurium Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 7.393096915 7.379267876 7.638499877 7.691998748 7.367747871 7.454198445 7.280149655 7.714635425 221572126 cda Carbon cycling Carbon degradation Starch Thermotoga neapolitana DSM 4359 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga;species:Thermotoga neapolitana; 9.294362715 9.416072214 8.378817533 8.156760709 8.268837944 8.387476935 8.075137174 78359539 gyrB other category gyrB Shewanella sp. PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 8.057415859 8.256708233 7.517486988 7.436752536 7.572362079 7.230725321 7.431022359 7.471308981 209542863 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 7.733649997 7.883707151 7.866036277 7.853631605 7.962910742 8.449540048 8.136222481 8.100681043 7.918377914 109452528 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.254769512 8.041062153 7.68001174 7.94157509 7.903351425 8.102897615 6.880361246 8.124251016 7.611938804 7.696782198 8.014593072 23978272 gyrB other category gyrB Pleurocapsa sp. PCC 7314 superkingdom:Bacteria;phylum:Cyanobacteria;order:Pleurocapsales;genus:Pleurocapsa; 8.188129884 7.896651174 7.552810573 7.939612649 7.93666941 8.1283611 7.949837641 7.739062321 7.733139807 261857044 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.459824243 7.869701944 7.807050148 6.971804989 7.556679878 7.917762598 7.828870926 7.827001205 255655165 obgE Stress Radiation stress Clostridium difficile QCD-23m63 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium difficile; 7.56293147 7.670069439 8.060221184 8.106411859 7.363542149 8.294328513 7.675216453 7.613544031 7.851004159 34102426 ChrA Metal Resistance Chromium Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 7.475836698 7.340963131 7.464813894 7.236178505 6.868357033 7.589233403 7.335728692 6.85595936 7.627889019 89512612 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.855506938 7.8421097 7.492247914 7.369447251 7.57686947 7.285075867 7.207809936 7.750196916 7.338870169 7.31705751 7.387791044 84516448 glnA Stress Nitrogen limitation Loktanella vestfoldensis SKA53 7.957855552 7.992658493 7.616659202 7.507725546 7.910977311 7.532527112 7.716633013 7.710480574 7.509908088 7.88732322 37499118 katE Stress Oxygen stress Nosema locustae superkingdom:Eukaryota;kingdom:Fungi;phylum:Microsporidia;genus:Antonospora; 7.930643589 8.160254445 8.105047517 7.769871669 7.628680606 7.751704265 7.756899344 7.800446175 7.652104762 7.57104123 7.571709079 23465587 ppx Phosphorus Phosphorus utilization Bifidobacterium longum NCC2705 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 8.145018631 7.96584644 8.211251786 7.654576828 7.247614929 7.742132888 7.950056847 8.164152591 7.699880205 7.464841518 7.407701126 206895631 CadA Metal Resistance Cadmium Coprothermobacter proteolyticus DSM 5265 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermodesulfobiaceae;genus:Coprothermobacter;species:Coprothermobacter proteolyticus; 8.152129935 8.132598145 7.230972479 7.083320206 7.087178385 7.282485382 7.595086468 92114511 pimF Organic Remediation Aromatics Aromatic carboxylic acid Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 8.031884322 7.912905768 8.010806475 7.737446562 7.834438017 8.226103256 7.941765905 7.840024308 7.766678412 196197408 CopA Metal Resistance Copper Clostridium thermocellum DSM 4150 7.622807039 7.772332494 7.878501192 7.576560956 7.897099392 7.903767088 7.927537841 7.337538107 7.817189579 220907764 pstC Stress Phosphate limitation Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.834506623 8.126618008 8.34138189 8.247356159 8.074265908 7.696563972 8.141511716 7.838346133 8.145125517 8.069657373 7.879037388 119716089 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.172818696 8.281689459 8.321758463 7.710475859 8.34793277 8.231584602 8.136654879 8.405795963 7.634694949 116249000 phdG Organic Remediation Aromatics Polycyclic aromatics Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.307172315 7.416045612 7.389421114 7.217783446 6.887491841 7.467385995 46917288 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.14316412 8.6995572 7.981324982 7.966957038 7.865402717 7.863983053 8.512351675 8.161838141 8.600972817 8.456131241 8.531120595 26278800 narG Nitrogen Denitrification uncultured bacterium 7.663723272 7.370482421 8.03939531 8.415038756 7.810231716 8.240988812 7.779628625 8.149549332 7.900842004 72162358 exoglucanase Carbon cycling Carbon degradation Cellulose Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 8.123957011 8.289507654 8.385328682 8.145081427 8.134222154 8.344861337 8.467481929 8.263899685 8.270258188 8.21522862 7.897360611 15130902 phytase Phosphorus Phosphorus utilization Trametes pubescens superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 7.492542239 7.027838491 7.388233711 7.884407315 7.685966886 7.329168161 7.510687716 7.334260763 139002966 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.419282275 7.923244645 7.419747753 8.028639462 7.891681252 7.951973671 7.574606733 8.142976232 7.69806559 7.530783398 7.850729966 221535684 gyrB other category gyrB Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 7.682061832 7.379342453 7.320216942 7.080415178 7.146330637 7.679554613 7.176344074 7.433044473 7.290524596 179344638 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 7.864152414 7.716499801 7.435659538 7.282282335 7.923228931 7.871378337 7.716134456 7.821885055 39575012 mhpC Organic Remediation Aromatics Aromatic carboxylic acid Bdellovibrio bacteriovorus HD100 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 8.238733554 8.681711548 8.210120531 7.923211816 7.819625727 7.622155679 7.506798509 7.605477423 7.844480361 7.861632472 8.112997643 271962328 sigma_24 Stress Sigma factors Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 8.309832147 8.470145362 8.195179108 8.230012087 8.715735946 8.482328829 8.454304257 8.391682109 8.159292554 108765622 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 8.118153398 8.272605241 8.22025609 8.140975273 8.0203664 7.871996315 8.451765656 8.016546442 7.965833789 8.140648672 8.153985776 219563136 nahA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 8.075685106 8.434394462 8.23643827 8.00216745 7.881820213 7.75651572 8.203805355 7.992624392 7.967544535 7.992227176 8.197825869 85832295 grpE Stress Heat shock Leeuwenhoekiella blandensis MED217 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Leeuwenhoekiella;species:Leeuwenhoekiella blandensis; 7.234391017 6.87523081 7.011645499 6.63967285 6.778060363 7.656320978 187478276 nagI Organic Remediation Aromatics Aromatic carboxylic acid Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 8.530983318 8.440514469 8.597027385 8.749500145 8.567410809 8.533232124 8.489422978 8.62601395 8.758147453 241773329 pstC Stress Phosphate limitation Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 7.063500654 7.571839867 7.520549805 7.891817696 7.332526445 7.553177554 7.425998813 7.886809424 113728638 vanA Carbon cycling Carbon degradation Others Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 7.082348341 7.175871381 7.72873699 7.63294931 7.236229152 7.121532273 7.302995252 7.340476607 148272217 CopA Metal Resistance Copper Clavibacter michiganensis subsp. michiganensis NCPPB 382 8.15099005 8.197103809 8.480288446 8.259876976 8.485479275 8.118462593 7.976619296 7.999661965 217978785 ahpC Stress Oxygen stress Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 7.741285757 7.742573997 7.726146894 8.097957403 7.78387737 8.171412444 7.422691565 7.558530856 7.62649023 32350486 scaffold Bacteria phage STRUCTURAL Enterobacteria phage RB69 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.845174373 7.807942845 7.296358484 6.968134983 6.938790271 7.423576279 6.863163348 7.002618395 145574041 iro virulence Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 8.481669825 8.071832088 7.541785741 8.000751135 7.94604114 7.969132611 7.40838545 8.062735059 7.645563231 7.583583838 7.574803288 99912657 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Burkholderia pseudomallei 1655 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 8.033737016 8.15649396 8.561037841 8.85697299 8.194399207 8.40889936 8.089656091 8.069695667 7.870242733 108765603 obgE Stress Radiation stress Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 7.99345787 7.804347145 7.79870189 7.578377563 7.913579183 8.341438133 8.078237887 7.965662509 8.029398579 41409756 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 8.203735799 8.137240904 7.990681093 8.048617008 8.148823446 8.175477764 8.197951601 8.361493738 8.377343717 8.369478241 8.222806835 18652847 AceA Carbon cycling Carbon degradation others Haloferax mediterranei superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax; 8.484787361 8.590003223 8.91791159 8.83498881 8.664635924 8.816067987 9.165716483 8.959631444 9.065636675 8.979503112 77378459 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.166394543 8.189779294 7.939900862 7.946956854 7.983729303 7.622133584 8.083508937 8.415814745 7.981280877 7.721711625 7.860102308 56315839 TerZ Metal Resistance Tellurium Azoarcus sp. EbN1 7.227771379 7.467512525 7.280709203 7.117279833 7.626026873 7.563267788 7.567064623 7.556910217 7.505836507 238784484 MFS_antibiotic Antibiotic resistance transporter Yersinia bercovieri ATCC 43970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 8.723921522 9.031635927 8.702742225 9.049789458 8.769841124 8.832195783 8.876702127 9.233036267 9.179739964 13883789 pcc Carbon cycling Carbon fixation Mycobacterium tuberculosis CDC1551 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 7.314671351 7.845616239 7.627441623 7.001511293 7.549498924 7.701979978 7.75052663 91692604 mdlB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.341576843 7.532454742 7.922046696 8.109533735 7.094917257 7.613734227 7.631099626 7.688538907 160931710 clpC Stress Protein stress Clostridium leptum DSM 753 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 8.073749933 8.504803302 7.971911269 8.135871153 7.985642662 7.943271295 8.387585044 8.140314758 8.3398266 8.001304092 7.946342583 258637577 oxyR Stress Oxygen stress Pantoea sp. At-9b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 7.921565269 8.022687247 7.294469908 7.197578068 110678893 Mex Antibiotic resistance transporter Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 7.221677029 7.338066021 7.620030813 7.323870923 93277210 gyrB other category gyrB Streptomyces sp. C33 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.003501775 8.253255573 7.48682527 7.260230628 115257130 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.714088414 7.577402167 7.216463734 7.196137516 7.881962012 7.72959632 7.537591925 7.748010317 7.583835418 219810259 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 8.019900035 8.236346516 8.069999716 8.198971537 8.019305623 8.191469887 8.219953568 8.073719957 8.076786153 8.153315538 7.867077828 71017645 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Ustilago maydis 521 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Ustilaginomycetes;order:Ustilaginales;family:Ustilaginaceae;genus:Ustilago;species:Ustilago maydis; 7.450776682 7.263685164 7.504577589 7.152695789 7.019932877 7.777540074 7.273323044 7.095054718 7.432701561 171060339 nagG Organic Remediation Aromatics Aromatic carboxylic acid Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 7.01794726 7.378016821 7.831336227 7.609240218 7.546904938 7.943121656 7.531410363 7.794891988 8.050595253 121583383 TerZ Metal Resistance Tellurium Polaromonas naphthalenivorans CJ2 8.08353436 8.237994762 7.775395392 7.670984142 7.312461868 7.848952872 7.48651456 7.834577301 7.624683732 7.635698725 7.726611729 226834558 obgE Stress Radiation stress Actinomyces urogenitalis DSM 15434 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces urogenitalis; 8.808258573 8.773491184 8.566629528 9.19433776 8.742179477 8.842687411 8.799567741 8.873128116 8.870261498 118424458 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.475109457 8.276212318 8.255632069 8.329484508 8.283770323 8.166382314 8.349424315 8.270985029 8.387703972 8.234883472 7.782308049 12054831 pstC Stress Phosphate limitation Streptomyces griseus subsp. griseus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 7.434562436 7.858331328 7.975609158 7.969938374 7.972276252 8.015298887 8.043501052 7.898006106 8.096416818 83026000 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 8.147544686 8.311891131 8.146420531 8.078074875 8.31840675 8.28142429 8.506741725 8.250673795 8.055963232 158523836 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.294755186 7.227840995 7.626495708 7.233541453 6.976036266 7.648258667 222453465 AceA Carbon cycling Carbon degradation others Halorubrum lacusprofundi ATCC 49239 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 8.324202665 8.250372894 8.246896441 8.397105333 8.225404887 8.278240994 8.16881638 8.151655536 7.833286335 52350168 HBH Organic Remediation Aromatics BTEX and related aromatics Bacillus licheniformis DSM 13 7.972989289 8.093488084 7.625573847 7.559847965 7.6119967 7.558465435 7.397177556 7.633370437 7.566830429 7.745726666 7.876493031 88710360 pstB Stress Phosphate limitation Flavobacteriales bacterium HTCC2170 7.383938934 7.803380204 7.72459129 7.738550875 8.195879978 7.733960922 7.530443201 7.793245096 197929966 exochitinase Carbon cycling Carbon degradation Chitin Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 8.298444646 8.285835413 8.219328489 7.565507244 8.128758068 8.148267512 8.085224862 7.982144196 7.454893242 169807109 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 7.841993939 8.159865376 7.213830172 7.210989955 7.477244046 7.312508931 7.209185131 7.796232214 7.360609954 7.100942019 7.613771694 68343621 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.334745813 8.448575509 8.191349323 8.398857315 8.480470582 8.285863623 8.521999274 8.178521361 7.673313859 198264862 bphA Organic Remediation Aromatics Polycyclic aromatics Octadecabacter antarcticus 238 8.229848391 8.573889567 7.378716857 7.442506794 7.396855906 7.526247868 7.451003967 7.698216922 7.140650707 7.708337312 157322770 SMR_antibiotics Antibiotic resistance transporter Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 8.318790948 8.240184491 8.179609122 8.39561872 8.37904438 7.990660902 8.641948604 7.992140512 8.355341606 8.590152782 8.207281021 1657802 ferredoxin_oxidoreductase Bioleaching Electron transport Acidithiobacillus ferrooxidans 8.119843701 8.148181716 7.579099657 7.544133134 7.486550854 7.180248619 7.32935009 7.677819427 7.520314204 7.314840124 7.59864354 88776321 SMR_antibiotics Antibiotic resistance transporter Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 7.580408436 7.570086882 7.887886758 7.794542011 7.497393832 8.133664864 7.427570646 7.547717724 7.386701913 56387952 ahpC Stress Oxygen stress Anaplasma marginale str. St. Maries superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales;family:Anaplasmataceae;genus:Anaplasma;species:Anaplasma marginale; 8.297020659 8.57424808 7.958086897 7.642208397 7.62616564 7.654180384 7.496561329 7.898348832 7.718049147 7.854089121 124516001 sulfoxide_reductase Bioleaching Sulphur Leptospirillum sp. Group II UBA 8.113237224 8.113549351 7.283361301 7.306574523 7.472053266 7.143269185 7.272710315 158251636 AprA Sulphur adenylylsulfate reductase uncultured alpha proteobacterium 7.881293157 8.073568819 7.730345152 7.710342288 7.907674851 8.10721475 7.788601091 7.696544603 7.747338842 67523489 tfdA Organic Remediation Aromatics Chlorinated aromatics Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.528284176 8.063456684 8.163398302 8.084885568 8.253293389 8.432595017 8.700800015 8.918746143 224803786 sigma_24 Stress Sigma factors Opitutaceae bacterium TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 7.462746876 7.521198946 7.983066899 7.494979448 7.456183218 7.63062991 7.514675697 73659743 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. CBDB1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 8.155472679 8.267620166 7.102147953 7.253746639 7.041480623 7.405533124 126706125 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2150 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.193001516 8.468453068 7.393172382 7.820350615 7.997996067 8.105752506 7.042777003 8.444914646 7.375348408 7.311620892 7.658811281 66801973 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 7.624803367 7.542410996 7.612787441 7.675623953 7.072569198 7.577168728 7.408444285 7.415258391 29125884 nosZ Nitrogen Denitrification uncultured soil bacterium superkingdom:Bacteria; 8.35116944 8.336211695 8.197898415 8.626372078 8.690864664 8.180472959 145595465 TerC Metal Resistance Tellurium Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 7.917534501 7.910043948 8.46113269 8.223542892 8.29452163 8.375638708 8.096153831 8.430954067 7.857326867 259023326 gyrB other category gyrB Rhodobacter sp. SW2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 7.547619601 7.432570545 7.874210716 7.447348568 7.469028514 7.487695893 7.524425917 7.387685894 221730316 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Diaphorobacter sp. TPSY superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax ebreus; 7.920666116 7.811736496 8.059918979 8.522364379 8.029929709 8.30628014 7.786079678 7.911231651 8.075177205 56708834 pcaG Organic Remediation Aromatics Other aromatics Silicibacter pomeroyi DSS-3 8.369446343 7.992435484 8.259188242 8.426748496 8.38586343 8.099074717 8.542653251 8.247672217 8.458970063 8.526039759 8.097142047 78516446 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.482519636 8.710035935 9.151694726 8.558956446 8.264642065 8.568293297 8.096461704 118618393 amyA Carbon cycling Carbon degradation Starch Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 8.718301595 8.778580266 8.415247539 8.353062844 8.357089114 7.922259272 8.181970415 8.101617502 8.232504955 8.414428179 145297699 CopA Metal Resistance Copper Aeromonas salmonicida subsp. salmonicida A449 8.217971557 8.129952826 7.681399205 7.636760533 7.508241938 7.351244273 7.511871439 8.044545189 7.564547239 7.29570717 7.62925994 150257300 bco Organic Remediation Aromatics Aromatic carboxylic acid Victivallis vadensis ATCC BAA-548 superkingdom:Bacteria;phylum:Lentisphaerae;family:Victivallaceae;genus:Victivallis;species:Victivallis vadensis; 8.545482757 8.237089128 7.915421672 8.246516904 8.367381639 7.824848922 8.29981088 7.887100908 8.063970072 225180053 bglP Stress Glucose limitation Clostridium sp. M62/1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 7.645110796 7.383617906 8.281052957 8.404675164 7.971507958 8.563862598 7.844713826 7.621379747 8.122918932 222086913 nmoA Organic Remediation Aromatics Nitoaromatics Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.800405159 7.685851687 8.022526409 7.955353059 8.465952794 7.82702185 8.268050376 8.39261262 7.69442427 229494287 clpC Stress Protein stress Rhodococcus erythropolis SK121 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 7.47852279 7.661630488 7.731284667 6.890714128 7.458504749 7.499790314 86574782 bclA Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.343540837 8.660508395 7.74244738 7.683537934 7.958541263 7.516341662 8.459014369 8.028425626 7.951190176 8.039496399 187919790 nhh Organic Remediation Aromatics Nitoaromatics Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.515768309 7.163619792 7.468803162 7.334431943 7.038134991 7.456609986 7.121431604 7.266905946 168193898 catB Organic Remediation Aromatics BTEX and related aromatics Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 7.897960694 7.672929529 7.302153773 7.212204286 8.0200943 7.996956116 8.076998969 7.840208253 8.002655419 27375137 linC Organic Remediation Pesticides related compound Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.285553499 8.537755224 8.150164945 8.179057025 8.006865256 7.901237764 7.786192744 8.165193008 8.110284786 8.051157871 8.218180508 114189298 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.960027871 8.025028341 7.834236062 8.201837471 8.304443711 8.142519856 8.313438238 8.104252188 7.339742849 196227694 obgE Stress Radiation stress Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 7.447134641 7.129197289 7.745812723 7.190864687 7.075220435 7.396691354 7.355659786 7.549011576 260223102 MATE_antibiotic Antibiotic resistance transporter Curvibacter putative symbiont of Hydra magnipapillata superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 8.055016054 8.214211074 7.578692665 7.589397533 7.530410335 7.013593561 7.304811076 7.875436801 7.670232088 7.618710901 7.778620764 256822972 B_lactamase_C Antibiotic resistance Beta-lactamases Kangiella koreensis DSM 16069 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Kangiella;species:Kangiella koreensis; 8.25383793 8.070620863 7.722734311 8.300448516 8.194271681 8.355297635 7.437443721 8.408932719 7.868284083 7.777381973 7.829305282 210157733 cellobiase Carbon cycling Carbon degradation Cellulose Collinsella intestinalis DSM 13280 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella intestinalis; 7.994093893 7.912032181 7.714725995 7.261660023 7.771025651 7.762199938 7.793885249 7.728805565 111380622 AceA Carbon cycling Carbon degradation others Hypocrea jecorina superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 7.974548294 8.352979136 7.499421381 7.592103884 7.267021052 7.176852633 7.103630903 7.063240803 7.252718346 70888496 sulfide_quinone_oxidoreductase Bioleaching Sulphur Acidithiobacillus ferrooxidans 7.818899973 8.147895351 7.895641341 7.300134423 7.448478057 7.823799002 7.980970245 7.913607125 7.650488141 7.684873951 116253795 MSAD Organic Remediation Others Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.600819734 7.967209678 8.319009714 7.511141379 7.792218826 7.729128604 7.645330213 126705675 gyrB other category gyrB Rhodobacterales bacterium HTCC2150 7.647263847 7.791470986 7.986224954 7.694966462 7.589534713 7.694688205 8.330375443 8.329152454 88815098 pstB Stress Phosphate limitation marine actinobacterium PHSC20C1 8.054998557 7.849352628 7.78587698 7.435426784 7.878456441 7.673118173 7.849596934 7.591634349 148251824 CopA Metal Resistance Copper Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.128040722 7.798897804 7.842920507 7.754817692 8.148591161 8.008290578 8.243299292 8.055912879 8.007178591 182679671 glx Carbon cycling Carbon degradation Lignin Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 8.721022085 9.029395963 8.302777677 8.177568412 7.787265721 7.793101164 8.204681368 8.255180497 7.999186614 8.352330386 8.362561063 59711666 endochitinase Carbon cycling Carbon degradation Chitin Vibrio fischeri ES114 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Vibrio fischeri; 8.424084493 8.357208827 7.77641313 7.92543531 7.675674212 7.503064156 7.742440994 7.57415452 7.849546293 15022439 exaA Organic Remediation Chlorinated solvents Pseudogluconobacter saccharoketogenes superkingdom:Bacteria;genus:Pseudogluconobacter; 8.936899758 8.911669922 9.039391313 9.180006878 8.844603699 9.202897923 9.663919077 9.025886326 9.575929314 9.297742557 9.401321751 12017984 major_capsid_protein Bacteria phage STRUCTURAL Bdellovibrio phage phiMH2K family:Microviridae;genus:Bdellomicrovirus; 8.383330352 8.181608629 8.158247693 8.180399025 8.629920671 8.337791641 8.529842404 8.521137247 8.396647012 8.502408785 8.356970829 91785308 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.463465093 6.816982929 7.731855039 221215292 ureC Nitrogen Ammonification Burkholderia multivorans CGD1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 8.43180871 8.350455371 8.051575154 7.927276111 8.399995051 8.189970344 8.305136273 8.394448405 8.07469924 27375663 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.226683396 7.318850157 7.465889974 7.614630441 7.010331108 7.206329146 7.285433617 7.368883387 581742 gyrB other category gyrB Streptomyces caeruleus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.04201743 8.05311401 7.338482447 7.849133793 7.961026711 8.097006559 6.804948557 8.297938541 7.483075425 7.640699208 7.633246219 110597502 pstB Stress Phosphate limitation Chlorobium ferrooxidans DSM 13031 7.727367271 7.518163318 7.426962286 7.806290853 8.016890007 7.724018785 7.750466026 7.799462329 55377678 pimF Organic Remediation Aromatics Aromatic carboxylic acid Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 7.724030783 7.658849649 7.644334959 7.692711641 7.712910738 7.837428642 7.663030614 7.543384268 7.516812301 91784685 nagG Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 7.441401521 7.453981336 7.861478301 7.958144744 7.865168253 7.998389292 7.37250789 7.499329342 7.698013257 218093273 CopA Metal Resistance Copper Thermococcus kodakarensis KOD1 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus kodakarensis; 7.116802988 6.991230393 257065480 pstC Stress Phosphate limitation Slackia heliotrinireducens DSM 20476 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Slackia;species:Slackia heliotrinireducens; 7.567631357 7.549719855 7.776941285 7.915174673 8.299262245 8.232812423 8.297798047 8.285710834 8.245616953 14024630 hrcA Stress Heat shock Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 8.633755476 8.958625845 8.687161347 9.271522443 9.045573673 8.41351166 8.537447937 8.989453527 8.899992762 148500074 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.081134448 8.193553534 8.178363239 8.2131494 8.689062731 8.497401275 8.190455033 8.340027895 67528292 pheA Organic Remediation Aromatics Other aromatics Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 8.111892863 8.000022899 7.641679578 8.121119839 8.5159319 8.273471675 8.549035041 8.486650064 8.165342798 154366339 pheA Organic Remediation Aromatics Other aromatics Acinetobacter calcoaceticus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 8.057803162 8.280569593 8.321370424 83017111 bphA Organic Remediation Aromatics Polycyclic aromatics Paenibacillus sp. YK5 7.535040731 7.470040163 7.112092424 7.388881059 7.535708191 7.681720326 7.537909234 7.318720556 7.206586796 251847179 endochitinase Carbon cycling Carbon degradation Chitin Paenibacillus sp. oral taxon 786 str. D14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 7.852477162 7.877815012 8.025927601 7.90683319 7.772987219 7.875517894 7.679746776 7.822790071 7.672833819 182635267 oxyR Stress Oxygen stress Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 7.586467278 7.763270152 7.632016406 7.709171935 8.245273608 7.923774982 7.861627845 7.599163882 7.340774115 148254366 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.896397532 7.624915871 7.696344244 7.700577253 7.844587563 8.273409592 8.183178841 8.055648128 7.923866328 126436767 nahA Organic Remediation Aromatics Polycyclic aromatics Mycobacterium sp. JLS 7.523575431 7.235121624 7.393325426 7.466982821 7.771388245 7.912669807 7.605961987 222823805 pstS Stress Phosphate limitation Campylobacter lari RM2100 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter lari; 7.115841774 7.059021803 6.967596442 6.869865221 7.465302762 209502687 vanA Carbon cycling Carbon degradation Others Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.267122447 8.324311282 7.739531856 7.897930864 7.812448282 8.126275695 8.055681376 8.332985114 8.051691014 7.7728648 7.834977342 146395792 hrcA Stress Heat shock Geobacter uraniireducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 7.513904213 7.602144036 7.338571616 7.455230359 7.346394545 8.122874355 7.755979604 7.593978785 7.829274061 194309655 sigma_24 Stress Sigma factors Pelodictyon phaeoclathratiforme BU-1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 7.381420027 7.312110777 6.984694693 7.580267127 7.39857474 7.214880898 7.149725509 28809300 amyA Carbon cycling Carbon degradation Starch Vibrio parahaemolyticus RIMD 2210633 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 8.294133474 7.768077396 8.12250399 7.700634468 7.860900494 8.377193011 7.55176441 7.594281242 7.729672585 218144553 atzA Organic Remediation Herbicides related compound Desulfovibrio salexigens DSM 2638 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio salexigens; 7.169358065 7.04233652 146401344 LpxB Bioleaching other category Acidiphilium cryptum JF-5 8.531467062 8.298582002 7.927157641 8.24780578 8.052225414 7.872557384 8.100128233 7.962822564 7.903677427 7.970526932 262396825 proV Stress Osmotic stress Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.267954844 8.079664547 7.54947106 7.721282723 8.023470782 8.230063451 7.917056668 7.767884704 7.836209103 193211704 dsrB Sulphur sulfite reductase Chlorobaculum parvum NCIB 8327 8.049940536 8.094300135 8.107669668 8.282374514 8.570242713 8.223454685 8.537134987 8.521075662 8.501561426 172062422 CopA Metal Resistance Copper Burkholderia ambifaria MC40-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 8.572452483 8.473145199 8.491279556 8.583722493 8.371337462 8.776502731 8.559907777 8.749017187 8.610716255 8.886827445 8.939029801 88811868 cap virulence capsule Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 8.000892256 8.172022003 7.925830547 7.751589689 8.184730501 8.090666746 8.234204904 7.934207832 7.917744722 139002644 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.456611081 7.719383049 7.556654834 7.856310839 7.405417464 7.890424824 7.479469885 7.932196689 7.789653283 198257003 gyrB other category gyrB Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 7.609240872 7.533755572 7.77602523 8.172537571 7.399099524 8.166881058 7.607533843 7.440423014 7.682723865 59718569 Arylest Organic Remediation Aromatics Other aromatics Neisseria gonorrhoeae FA 1090 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria gonorrhoeae; 7.317969752 8.036323298 8.136697413 8.130235601 8.024271523 7.999008578 7.849662007 7.964190535 260542192 dsrB Sulphur sulfite reductase Blautia hansenii DSM 20583 7.045260864 7.150522134 7.007580185 6.653158577 7.138938615 7.636254753 120324818 fnr Stress Oxygen stress Marinobacter aquaeolei VT8 8.535190226 8.557321838 7.981898282 7.86144162 7.915460234 7.490864667 7.436816464 8.026124598 7.641241286 7.663730659 7.691567679 154698716 pheA Organic Remediation Aromatics Other aromatics Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 7.961979126 8.05135801 8.174726896 8.17110889 8.371396602 8.368394252 8.149086245 126668077 pimF Organic Remediation Aromatics Aromatic carboxylic acid Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 7.572550698 7.646674778 7.287339257 7.000518599 7.560278441 7.572776448 7.444994967 7.404151703 217498707 hydrogenase Energy process Energy process Shewanella baltica OS223 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 8.592798831 8.294251014 8.038189522 8.280900152 8.721028738 8.954099148 8.484123208 8.648727074 8.209320454 8.465489835 8.120827616 116195334 ara_fungi Carbon cycling Carbon degradation Hemicellulose Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 7.262904371 7.364142396 7.639134564 7.466336175 7.025198088 7.256383367 7.137459063 7.712051127 270320977 obgE Stress Radiation stress Micromonospora aurantiaca ATCC 27029 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora aurantiaca; 8.479756723 8.34105767 7.995899292 7.9121758 7.823185618 7.738881328 7.91990639 7.872687854 7.977796983 7.994098725 8.001686148 226941786 oxyR Stress Oxygen stress Laribacter hongkongensis HLHK9 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Laribacter;species:Laribacter hongkongensis; 7.548395848 7.490595646 7.399337712 7.226842778 7.165872645 7.44759552 7.29231204 110224998 gyrB other category gyrB Streptococcus parauberis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 7.860001368 8.112041286 121306717 MFS_antibiotic Antibiotic resistance transporter Thermosinus carboxydivorans Nor1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Thermosinus;species:Thermosinus carboxydivorans; 8.129697219 7.946167885 7.519611101 7.423254269 7.396568796 7.26753801 7.239007894 7.782742145 7.588113566 7.201044367 7.706957366 116743245 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.242768902 8.165251858 7.159048593 7.575703002 7.556282121 7.720910356 7.41736303 8.022929361 7.699399871 7.605009484 7.863377925 83593033 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 8.164954156 8.497930895 7.83508374 8.375604696 8.488893772 8.665321889 7.400732042 8.673235393 7.744749744 7.76528267 8.254756656 227331204 SMR_antibiotics Antibiotic resistance transporter Citrobacter youngae ATCC 29220 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter youngae; 7.792296014 7.529246111 7.441543609 6.910393188 7.608595948 7.583397818 7.931158126 8.003147583 7.392410204 192289470 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.638222331 7.721095575 7.700869112 7.781095613 7.649974876 8.042663552 7.61077453 7.548691195 7.652780857 114706728 pstB Stress Phosphate limitation Fulvimarina pelagi HTCC2506 7.858213019 7.96735689 8.153709567 8.393028939 8.242502808 8.239069626 8.012476216 8.19114743 8.357443434 254474155 phenol_oxidase Carbon cycling Carbon degradation Lignin Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 7.874524124 8.112720472 8.33034005 8.219177536 8.614446949 8.3387177 8.700732745 8.884024994 8.642994945 56312224 nagI Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 8.096285594 8.143493739 8.132218373 8.239740683 8.112149511 8.140280558 8.537502417 8.383737721 8.645800856 8.115737867 8.382718361 212545530 BpH Organic Remediation Aromatics Aromatic carboxylic acid Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 6.860251066 6.823026181 7.061370298 115374345 pcc Carbon cycling Carbon fixation Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 8.257199904 7.949937045 7.951579461 8.323127828 8.037622783 8.363868471 7.95890279 8.057771013 70729511 silC Metal Resistance Silver Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.956314853 8.122716344 8.409710334 8.62691694 8.227148928 8.302999173 8.283292276 8.332680571 7.951111347 90199690 TerC Metal Resistance Tellurium Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 7.460566271 7.634075621 7.704037026 7.429689609 7.464407985 7.496605646 211957307 sox Sulphur Sulphur oxidation Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 7.954148056 7.766186064 7.929089328 7.886981724 7.775189009 7.525986827 7.69425169 220029458 scaffold Bacteria phage STRUCTURAL Enterobacteria phage JS10 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.335705446 6.916282042 6.955366492 6.851890113 6.718499543 7.117850205 6.87379813 7.024237641 133910829 glnA Stress Nitrogen limitation Saccharopolyspora erythraea NRRL 2338 8.256159393 8.152576306 8.613468218 8.136690891 7.97740054 8.232428039 8.306405823 56685613 mer Metal Resistance Mercury Synechococcus elongatus PCC 6301 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus;species:Synechococcus elongatus; 7.437025523 7.094820891 7.008822691 7.418429146 221080293 Catechol Organic Remediation Aromatics Other aromatics Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 8.053725811 8.195776865 8.729912327 8.871125925 8.319492757 8.571687658 8.554564013 8.616245602 8.832145737 117577561 sigma_24 Stress Sigma factors Gramella forsetii KT0803 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Gramella;species:Gramella forsetii; 7.297432837 7.668760747 7.502640695 7.208625022 7.839317955 22415761 rubisco Carbon cycling Carbon fixation Synechocystis trididemni superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 7.989066811 7.950945924 7.906844814 7.839241421 7.790061722 7.895136564 8.036725571 8.056714153 8.196287453 8.070179442 7.984283682 157322884 narI Stress Oxygen limitation Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 8.051427013 8.124897544 7.616287779 7.609421596 7.620303367 8.169839229 7.229555392 7.946518855 7.311152191 7.210492745 7.627538161 49644554 ZntA Metal Resistance Zinc Kluyveromyces lactis superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Kluyveromyces;species:Kluyveromyces lactis; 7.432370282 7.273257516 7.182851496 7.067878198 7.548678068 7.255761064 7.048812708 7.364843034 226092218 sigma_24 Stress Sigma factors Gemmatimonas aurantiaca T-27 superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 8.312553559 8.147334278 8.226489602 8.181462946 8.2711045 8.391277973 8.575448805 8.286125081 9.002953462 8.678258626 8.547339965 255345609 sigma_24 Stress Sigma factors Pedobacter heparinus DSM 2366 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter;species:Pedobacter heparinus; 6.597575989 7.273342237 145322358 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 8.04267758 8.705261751 8.97344694 8.613053646 8.602351247 8.744604868 8.627124025 8.697143937 7573260 PobA Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas sp. LB126 7.883401335 7.94403758 8.067995492 7.795301941 7.986940251 7.961571332 8.02896934 7.999272942 8.064255293 108765915 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 7.044423477 6.965962415 7.522457406 7.403410395 7.055597723 76884554 cap virulence capsule Nitrosococcus oceani ATCC 19707 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 7.430307208 7.270872666 6.971878713 6.852749193 7.268338321 7.322479758 7.238963556 7.379481914 7.181450999 85109486 tfdA Organic Remediation Aromatics Chlorinated aromatics Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 8.393207303 8.212288196 8.161358318 8.440984577 8.201364462 8.618688973 8.450643532 8.113518846 8.413083683 8.373918055 8.026841168 126236393 CDH Carbon cycling Carbon degradation Cellulose Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.660300184 8.290718888 8.334239828 8.343961564 8.026005931 8.451578432 8.362767871 8.413353193 8.381042084 8.232283065 8.159822797 67902288 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.534793083 7.535284545 7.313330256 8.144931902 7.693349281 134135203 Arylest Organic Remediation Aromatics Other aromatics Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 8.214027921 8.009814036 7.943641588 7.816983059 7.772222772 7.990562538 7.837649179 7.711428841 115253534 tftH Organic Remediation Aromatics Chlorinated aromatics Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.227675645 8.301288342 7.582011055 7.481314219 7.522792251 7.735481021 7.460848363 7.430916114 7.543991024 7.577396094 78102091 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.703041263 7.504974833 7.553242627 7.529529829 7.212771667 7.651496488 7.654400021 7.731679877 7.37893886 261413088 MFS_antibiotic Antibiotic resistance transporter Aggregatibacter actinomycetemcomitans D11S-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Aggregatibacter;species:Aggregatibacter actinomycetemcomitans; 8.057790292 8.160136584 8.091205307 8.066288006 8.103739128 8.175571811 8.149178861 8.198178159 8.204077448 8.027480769 7.959878508 114569801 ppx Phosphorus Phosphorus utilization Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 7.68273757 7.628056475 7.020990259 6.987136919 7.129202565 7.554710334 109947049 ureC Nitrogen Ammonification Helicobacter acinonychis str. Sheeba superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter acinonychis; 7.288528207 7.233180325 7.43967811 7.240932513 7.168651655 7.745018773 7.244350233 7.357346856 7.402162282 32966082 Catechol Organic Remediation Aromatics Other aromatics Burkholderia sp. R172 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.840150912 8.538740705 8.298122092 8.133317796 8.468761501 8.521792832 8.620366219 8.468539753 8.875250677 8.636912803 211584991 CopA Metal Resistance Copper Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 8.511600173 8.265001899 8.389511924 8.576866085 8.341349967 8.696073766 8.189121318 8.183299503 8.010118915 52080935 pcc Carbon cycling Carbon fixation Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 8.543622258 8.754556966 7.805833522 7.724825934 7.435896059 7.203138443 7.63277177 7.566004161 7.412334689 7.815303378 91684226 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.000436585 8.268011858 8.213738323 8.024429251 7.761699987 7.87539925 8.230613926 8.11252137 8.026749839 7.910362446 7.934737195 213970168 TerC Metal Resistance Tellurium Pseudomonas syringae pv. tomato T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 8.223243388 8.156131973 7.27113112 7.858835552 8.116870718 8.024477761 7.72301564 8.157320767 7.852335999 7.842806147 7.943065037 113475254 CopA Metal Resistance Copper Trichodesmium erythraeum IMS101 8.58656494 8.213786591 6.96843902 7.978831135 7.981362446 8.203603615 8.430167156 7.6220325 8.573660213 8.123451016 8.044471187 256586001 ahpF Stress Oxygen stress Saccharomonospora viridis DSM 43017 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora viridis; 7.876087649 7.923889666 7.900748249 7.395052165 8.110234061 7.959558113 7.799605174 7.712630746 157168013 ArsC Metal Resistance Arsenic uncultured bacterium superkingdom:Bacteria; 8.009368377 8.474248052 7.775739023 7.992451073 7.892834908 8.206725058 7.740976335 8.42802728 7.789548671 7.884431724 256714465 glnR Stress Nitrogen limitation Lactobacillus crispatus MV-1A-US superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus crispatus; 7.294035933 7.458891003 7.346814675 7.497461122 7.286301804 7.467645775 7.149173307 7.29858663 7.341248484 189421719 bco Organic Remediation Aromatics Aromatic carboxylic acid Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 7.607084919 8.00014673 8.058057748 7.70152511 8.418312774 7.47282238 7.808590341 7.610395836 2331295 lip Carbon cycling Carbon degradation Lignin Ceriporiopsis subvermispora superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Ceriporiopsis; 8.249149448 8.475280899 8.197880023 8.49294694 8.207429643 8.26088632 8.743269612 8.528265925 8.512082636 8.519387347 7.946815236 209502310 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.311699203 8.133179664 7.697965065 7.842131631 8.072821317 8.11068702 8.049855886 8.358428791 8.327179223 8.348225655 92431299 cbdA Organic Remediation Aromatics Chlorinated aromatics Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.172602897 8.181608629 8.117775149 7.856926676 7.759933133 7.849688994 8.055153878 7.854215155 7.875424921 7.619305904 187930810 silC Metal Resistance Silver Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.62684349 8.723405896 8.319271783 8.179106218 8.055121431 7.816742921 7.917590162 7.945215437 8.322908266 8.186411374 7.827687856 89087213 amyA Carbon cycling Carbon degradation Starch Bacillus sp. NRRL B-14911 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.831256815 7.393936287 7.712057981 8.171540263 7.655010996 8.024806418 7.736851083 7.990095813 7.561433776 23501636 ppx Phosphorus Phosphorus utilization Brucella suis 1330 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Brucella;species:Brucella suis; 8.131328444 8.231572181 7.818451937 7.747371769 7.771258444 7.303151018 6.998847991 7.932226236 7.773927683 7.548802556 7.83250372 117620999 tutFDG Organic Remediation Aromatics BTEX and related aromatics Aeromonas hydrophila subsp. hydrophila ATCC 7966 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas hydrophila; 7.911708149 9.262327695 9.082088434 9.118384766 8.908540926 8.972664416 9.324725149 8.82515483 95110658 endochitinase Carbon cycling Carbon degradation Chitin Pseudomonas superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae; 8.073528847 8.086596359 7.925136847 7.871137783 7.874840729 7.502849629 7.866230035 8.061708224 7.883716906 7.93173723 7.454656198 116613024 mer Metal Resistance Mercury Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.35242029 7.938045693 8.085302166 8.224216154 7.347626949 8.419598763 7.45760737 7.703356815 8.273235906 72395054 CadA Metal Resistance Cadmium Methanosarcina barkeri str. fusaro superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina barkeri; 8.279881604 8.749874461 8.498142211 7.531670003 8.078010052 6.997988551 7.866828334 7.525646514 7.487036584 8.057786519 227505387 pcc Carbon cycling Carbon fixation Corynebacterium striatum ATCC 6940 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium striatum; 7.888758527 8.25758558 7.686868849 7.773803286 7.96840775 7.796905433 8.115410681 7.682528159 8.180507149 218246391 CopA Metal Resistance Copper Cyanothece sp. PCC 8801 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.55614365 7.306000725 7.335385188 6.998236428 7.438849223 7.099292714 7.344413553 119669737 alkK Organic Remediation Others Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8.039591218 7.972766432 7.29061118 6.63384311 7.019659837 7.331858836 6.912405543 7.596616235 7.377704386 7.155702744 7.179587643 152988861 glnA Stress Nitrogen limitation Pseudomonas aeruginosa PA7 7.069291452 7.589943982 7.654004829 7.090430928 7.538799271 7.317048571 7.4474038 7.852440777 260634250 fnr Stress Oxygen stress Prevotella sp. oral taxon 472 str. F0295 7.921491706 8.207431031 7.40948384 7.366416833 7.41240319 133913225 narI Stress Oxygen limitation Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 8.008148659 8.28541913 8.18781092 8.750328908 8.24034688 8.739243333 8.581161111 8.742625311 133734519 nmoA Organic Remediation Aromatics Nitoaromatics Listeria monocytogenes HPB2262 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria monocytogenes; 7.756461584 7.54006046 7.578275633 7.541566072 7.447017288 8.060551796 7.237191135 7.519416903 7.767866365 76802162 pstB Stress Phosphate limitation Natronomonas pharaonis DSM 2160 8.45891172 8.205382412 8.410268484 8.35141265 8.182677278 7.900443252 8.50841191 8.617865663 8.300947478 8.313804816 8.401331621 120594321 nagI Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 7.39527593 7.352474464 7.715881634 7.756450018 7.658615855 7.60919071 7.276755885 7.766395963 7.582429258 187251334 pilin virulence pilin Elusimicrobium minutum Pei191 superkingdom:Bacteria;phylum:Elusimicrobia;class:Elusimicrobia;order:Elusimicrobiales;family:Elusimicrobiaceae;genus:Elusimicrobium;species:Elusimicrobium minutum; 6.908965817 6.506127206 7.389766349 6.605027394 7.00090085 198248315 CopA Metal Resistance Copper Acidithiobacillus ferrooxidans ATCC 53993 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 7.404779164 7.470559312 7.268212121 7.545524429 7.72562922 7.459447254 7.373999707 160875386 type_III_secretion virulence secretion Shewanella baltica OS195 8.284095908 8.641581303 7.787431643 7.917136618 7.776782244 8.139985632 7.666954388 8.310912952 7.752540455 7.894461719 7.728485891 62003565 narG Nitrogen Denitrification uncultured bacterium 7.5498227 7.946498314 7.818017083 7.440994909 7.806711261 7.71398714 7.761925476 7.868069205 7.815953834 218321789 CopA Metal Resistance Copper Vibrio splendidus LGP32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 7.962066731 8.196133932 7.229285427 7.361472582 7.198294733 7.264849814 6.613998673 7.0507916 7.487422312 255038415 glnA Stress Nitrogen limitation Dyadobacter fermentans DSM 18053 8.553607322 8.871014561 7.842757227 7.987624608 8.32589709 8.055218002 7.699333982 8.298654044 8.142179341 8.19088379 8.286852676 119387319 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.005081576 8.313376967 8.37211788 8.579727723 8.136172633 8.550938699 8.446100675 8.586970948 8.234915934 8.439742917 145702665 GAPDH Bioleaching Carbon fixation Metallosphaera sedula DSM 5348 8.296186669 8.600501982 7.898627808 7.580983568 7.764124136 7.350354223 7.366295206 7.786070681 7.791061974 7.696008542 8.011386942 218151687 hydrogenase Energy process Energy process Desulfovibrio salexigens DSM 2638 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio salexigens; 7.846033988 8.247805728 7.285524048 6.887731389 7.029895487 7.077092888 6.742094445 7.020052752 7.136344288 145208 fimbriae virulence fimbriae Escherichia coli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 8.089324173 8.233173485 8.133634165 8.518831284 8.254304738 7.42973104 8.342417129 7.751756915 8.209745064 7.991256199 8.570957989 68345123 nitA Organic Remediation Aromatics Other aromatics Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.070259371 8.16531049 8.399330338 7.907119564 7.912959023 8.09400936 8.446923433 8.018590991 7.942629787 7.788488439 7.808660206 260903504 fnr Stress Oxygen stress Vibrio parahaemolyticus AQ4037 8.063975138 8.260234355 7.328546805 7.269073227 7.408655633 7.340373231 7.980025123 7.447803804 7.123639688 7.462206162 218750768 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.646319038 9.042380145 8.669217845 8.634136194 8.007189691 8.627669241 9.063206075 8.717736684 8.918506174 8.607039134 8.884286213 197103973 phoB Stress Phosphate limitation Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 8.134704835 7.617848118 7.615769671 7.637277885 8.104443261 8.146457133 7.862458266 7.775379456 7.724445997 16329777 cydA Stress Oxygen limitation Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 7.607126465 7.739883244 7.744396174 8.174658942 8.299037484 8.039303561 7.930882647 8.17726229 7.529088645 195975525 amyA Carbon cycling Carbon degradation Starch Streptococcus equi subsp. zooepidemicus MGCS10565 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus equi; 8.0653562 8.169477137 7.728881735 7.519826353 7.485232648 7.003189992 7.05321832 7.747613288 7.211002869 7.195961261 7.854274217 256740339 SMR_antibiotics Antibiotic resistance transporter Thiomonas intermedia K12 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas;species:Thiomonas intermedia; 7.005851044 7.172583056 7.218518381 7.700810904 78102419 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.613652093 8.696151358 8.36141644 8.372623485 8.551684134 8.584375443 8.7639433 8.543949711 8.350634638 154285642 pheA Organic Remediation Aromatics Other aromatics Ajellomyces capsulatus NAm1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 8.354587232 8.498267163 8.160899586 8.242227245 8.46746497 8.6565653 8.493331615 7.886085134 8.33844384 256364219 fnr Stress Oxygen stress Catenulispora acidiphila DSM 44928 8.524441889 8.430965273 8.641982729 8.686633726 8.265059282 8.658473652 8.807456297 8.607249536 8.707953649 8.507331348 8.387888837 146305087 type_III_secretion virulence secretion Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 7.316057478 7.385050112 7.600561387 7.761584863 7.684465207 7.580354429 7.68740858 7.636265416 7.613470688 188989778 PobA Organic Remediation Aromatics Aromatic carboxylic acid Xanthomonas campestris pv. campestris str. B100 8.125658134 8.503714639 8.109500949 7.629730021 8.443477851 8.01430665 7.929905669 7.848459648 8.29962937 164605314 hzo Nitrogen Anammox planctomycete KSU-1 8.220665469 8.521566951 7.571608143 7.510420394 7.606969301 7.162123392 7.21200422 7.573658257 7.402221957 7.152680795 7.975171241 91797516 ureC Nitrogen Ammonification Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 7.867627786 8.045573173 8.063735943 8.451059495 7.954573253 7.587189931 8.02884885 7.572830429 78362644 gyrB other category gyrB Thiomicrospira crunogena XCL-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Thiomicrospira;species:Thiomicrospira crunogena; 7.038307052 7.267775349 220923578 mer Metal Resistance Mercury Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 8.037207194 8.272118791 8.506127143 8.699933512 8.305816782 8.024308206 7.777633743 8.224187512 8.082499129 78484354 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Thiomicrospira crunogena XCL-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Thiomicrospira;species:Thiomicrospira crunogena; 8.435444986 8.103632062 7.934608954 7.868356408 224824908 narJ Stress Oxygen limitation Lutiella nitroferrum 2002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Lutiella;species:Lutiella nitroferrum; 7.905233894 8.197223719 8.485922769 8.492011873 8.220787321 8.17446487 7.948597166 8.128835385 7.919641025 196178008 hrcA Stress Heat shock Microcoleus chthonoplastes PCC 7420 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus chthonoplastes; 8.025229557 8.250868189 7.764400492 7.766634977 7.460835062 7.321187347 7.467472322 7.25853425 7.676222093 283785289 pap virulence adhesin Citrobacter rodentium ICC168 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 7.98611787 8.023065919 7.63785789 7.717138228 7.56204994 6.94357645 7.159300625 7.665857677 7.367916097 7.254444068 7.534093132 82570877 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 8.049336458 8.144164803 7.410896085 8.192598263 7.993406101 8.662042718 7.906822581 8.458167842 8.076299273 7.504577573 7.930477688 108798649 nahA Organic Remediation Aromatics Polycyclic aromatics Mycobacterium sp. MCS 8.367643262 8.352959681 7.719804311 7.515608537 7.711822755 7.447361726 7.636300537 7.90779126 7.572916992 7.495488608 7.797016203 262394143 type_III_secretion virulence secretion Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.890707231 8.137638874 7.260924597 7.148038644 7.116013419 6.994781812 7.437773279 171057825 atzB Organic Remediation Herbicides related compound Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 7.994602612 8.215026089 7.998529576 7.804557311 7.806660087 7.755135081 8.087584972 7.986728162 7.949885982 7.860723338 8.053310958 221159484 ChrA Metal Resistance Chromium Rhodobacter sphaeroides KD131 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 8.124504435 8.062148499 7.720976385 8.175139635 8.065144126 8.075056077 7.891926214 8.138099832 7.876802467 30387413 single_strand_annealing_protein Bacteria phage REPLICATION Enterobacteria phage epsilon15 order:Caudovirales;family:Podoviridae;genus:Epsilon15-like viruses; 8.020937954 8.21563987 8.009006025 7.514643412 7.968948267 7.779523988 7.947764791 8.07206856 190894500 nmoA Organic Remediation Aromatics Nitoaromatics Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.29242929 8.316668841 8.170212399 8.100571854 8.059463707 7.608890865 8.475415807 8.10844042 8.253850886 8.275672309 7.935684168 80976981 pulA Carbon cycling Carbon degradation Starch Streptococcus suis 89/1591 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus suis; 7.591562635 7.675577316 7.696450375 7.188971348 7.412694436 7.809723681 7.128951387 7.443967553 87281271 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.314442093 8.342964475 8.309238789 7.792871412 7.830161279 8.194145484 8.279271308 8.484636989 8.154213811 8.030598861 7.689587657 120325980 carA Organic Remediation Aromatics Heterocyclic aromatics Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 8.201389698 8.222131815 8.569665516 8.410212151 8.125927658 8.318466765 8.248569882 8.634094171 8.23861761 7.987920231 8.19363972 30180138 sigma_70 Stress Sigma factors Nitrosomonas europaea ATCC 19718 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas europaea; 7.259742723 7.187327713 148273127 nmoA Organic Remediation Aromatics Nitoaromatics Clavibacter michiganensis subsp. michiganensis NCPPB 382 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 8.095276402 8.222873932 7.357656303 7.852910796 7.967997658 8.234318523 7.808751629 8.238648514 7.922089921 7.908973414 8.002120626 113936950 mauAB Organic Remediation Herbicides related compound Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.156694315 8.023160565 7.093741231 7.417210542 7.169907804 6.662749711 6.827285018 7.600950187 77381161 iro virulence Pseudomonas fluorescens Pf0-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.589444647 8.67394616 8.406079338 7.824308327 8.650949804 8.195191251 8.393008693 8.391341461 8.600350161 283817244 sigma_24 Stress Sigma factors Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 7.034560115 6.97444605 7.020867313 91202932 Mex Antibiotic resistance transporter Candidatus Kuenenia stuttgartiensis superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;genus:Candidatus Kuenenia; 8.316277499 8.223969521 7.866248916 7.773509612 7.771410111 7.536845007 7.825870595 8.323675407 8.04238304 7.768388301 7.752419001 119226166 gyrB other category gyrB Rhodococcus coprophilus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7.044527705 7.172882602 7.340831985 85824586 ppx Phosphorus Phosphorus utilization Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.882379614 8.320522463 7.373789035 7.456282335 7.66545937 7.6978844 7.269221163 7.623695711 7.01578737 7.298676052 262272602 ureC Nitrogen Ammonification Blattabacterium sp. (Blattella germanica) str. Bge superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Blattabacteriaceae;genus:Blattabacterium;species:Blattabacterium sp. (Blattella germanica); 6.879171361 7.371337374 7.057542543 57225463 ArsC Metal Resistance Arsenic Dehalococcoides ethenogenes 195 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides;species:Dehalococcoides ethenogenes; 7.631238424 7.63226592 7.716382791 7.585767746 7.72177831 7.978217847 7.945666476 8.012344833 183174953 SMR_antibiotics Antibiotic resistance transporter Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 8.366559843 8.618129093 7.47887322 7.551299992 7.317833445 7.27336913 7.21355043 7.770553108 7.437201744 7.253790918 7.711487257 91975216 CopA Metal Resistance Copper Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.916421964 7.752586952 7.651917422 7.939281322 8.009210797 7.985604504 7.484858483 7.734003435 62512287 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.419010082 7.906147831 7.418912724 6.971093177 6.872201702 7.351920313 120560265 sigma_24 Stress Sigma factors Shewanella sp. W3-18-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 7.765317535 7.923573298 7.054906283 7.175304393 7.092558821 6.688938664 7.396249497 82791415 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 8.453574801 8.262721708 8.087260064 8.31391006 8.166525112 8.653076979 8.510313513 8.638581359 8.457004612 222420440 MFS_antibiotic Antibiotic resistance transporter Staphylococcus carnosus subsp. carnosus TM300 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus carnosus; 7.039879949 6.87224219 6.994133826 225871737 endochitinase Carbon cycling Carbon degradation Chitin Acidobacterium capsulatum ATCC 51196 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteria;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 8.205309935 7.540559793 7.996495637 7.798300032 8.342420963 7.675972509 8.071391592 8.233208758 7.991163436 114565963 nifH Nitrogen Nitrogen fixation Syntrophomonas wolfei subsp. wolfei str. Goettingen superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Syntrophomonadaceae;genus:Syntrophomonas;species:Syntrophomonas wolfei; 7.31347166 7.116675939 7.307221838 7.173611253 6.743569206 7.427968081 7.397166177 7.269419729 7.342625756 20089771 pstS Stress Phosphate limitation Methanosarcina acetivorans C2A superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina acetivorans; 8.263288833 8.31295207 7.806781782 7.591553088 7.280825459 7.449399721 7.790970929 7.834692335 7.68064471 7.892925508 145223801 merB Metal Resistance Mercury Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.468711457 7.677039544 7.615410555 8.020550123 8.117855234 7.942384259 7.696220978 7.654332078 37925797 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.958517325 7.851752774 7.065413419 7.086649329 7.226769532 7.013756042 7.287105408 7.74960062 7.099843428 7.143550979 7.694050425 39625 cda Carbon cycling Carbon degradation Starch Paenibacillus macerans superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 8.358269897 8.233436444 7.743201103 8.136426304 7.988419387 8.400835538 7.799956997 8.621487367 7.808503154 7.629165357 7.92964356 110632136 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.943053289 8.493151096 7.955413416 8.088510793 8.056030996 8.60852674 7.269187429 7.612922282 7.360638206 7.673723687 27375570 Arylest Organic Remediation Aromatics Other aromatics Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.728544988 7.128150467 7.395331634 7.399612844 7.607294103 7.973634056 7.707073891 7.306264736 7.375761612 71914567 ppx Phosphorus Phosphorus utilization Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 7.230379592 7.220106285 7.286365091 7.458191555 7.340227566 7.831000105 172063645 CopA Metal Resistance Copper Burkholderia ambifaria MC40-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 8.407310621 8.371386718 7.982269754 8.56432127 7.66474293 8.11249972 7.769435214 8.142984571 7.778796274 8.026550711 7.467280819 221157752 glnA Stress Nitrogen limitation Thermomicrobium roseum DSM 5159 8.536176417 8.100188635 7.816057391 8.237386311 8.232793977 8.436369379 8.229742455 8.263342958 7.959956677 183178070 mhpB Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 8.171534208 8.038402584 7.573206353 7.715746879 8.361987921 8.459470004 7.998974893 8.209876182 7.877217189 8.276405843 8.104182586 35211009 pstB Stress Phosphate limitation Gloeobacter violaceus PCC 7421 8.016912646 8.28603143 7.742689615 7.731962214 7.828545169 7.812622654 8.193662832 8.168930588 7.900520558 8.069354447 8.116860424 196222462 ChrA Metal Resistance Chromium Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 8.532924739 8.640349472 7.990670984 7.813228932 7.861453304 8.073004538 7.634771061 8.434043999 7.671176553 7.778244294 7.752100858 152936974 TehB Metal Resistance Tellurium Clostridium botulinum F str. Langeland superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium botulinum; 7.237908795 6.914207099 7.153096344 7.292004113 18369657 bco Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus evansii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8.251346629 8.280569679 7.670199095 7.509759679 8.089068354 7.988747891 7.793136825 7.634967836 7.824846715 7.960450249 227069581 NiR Nitrogen Assimilatory N reduction uncultured archaeon 8.276045123 8.493539749 8.186586501 8.041312437 8.272228969 8.204823734 8.586117817 8.273644483 8.690734605 8.705905979 8.720433118 48094247 Xamo Organic Remediation Other Hydrocarbons Pseudomonas sp. OX1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.386828508 7.386578609 7.75465121 7.289528998 8.353042541 6.952159296 7.270248612 7.221497202 56710254 nitro Organic Remediation Others uncultured bacterium superkingdom:Bacteria; 8.179253084 7.786486222 7.59213347 7.625725408 7.776929348 7.825430193 7.791460891 7.947438326 7.699183334 199593993 narG Nitrogen Denitrification uncultured bacterium 7.662476865 7.339023346 7.252204544 7.590900742 160346624 tfdA Organic Remediation Aromatics Chlorinated aromatics Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 8.244988988 8.250566671 8.448828572 8.204069911 7.865956287 8.041934663 8.225936205 8.039841274 8.15814217 8.07227889 7.97752367 92115102 sigma_32 Stress Sigma factors Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 7.669036986 7.338515535 7.381327365 7.474008807 8.006204256 8.029144049 7.637354922 8.083357378 91785103 pilin virulence pilin Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.167794538 8.669601991 7.58630935 7.471653099 7.565663891 7.516905059 7.370397933 7.627559151 7.426263841 7.500175028 113896355 ppx Phosphorus Phosphorus utilization Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 8.354285923 8.778491359 8.054834453 8.103404815 8.080358568 7.50146907 7.047530858 7.757208295 7.463770095 7.822835186 187924607 mer Metal Resistance Mercury Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8.3304501 8.53135851 8.019910443 8.019741585 8.507562112 8.646177565 8.354244666 8.159949983 7.845040566 8.074107098 7.881470778 66045437 ureC Nitrogen Ammonification Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 7.980567715 8.062310806 7.852735661 7.671231298 7.959153937 8.248183971 8.101801314 8.09773368 8.143786898 158424730 pstB Stress Phosphate limitation Azorhizobium caulinodans ORS 571 8.058668421 7.416955127 7.941143138 7.135980517 7.878114067 7.817450798 7.414965826 7.85929364 7.623483767 157912973 exaA Organic Remediation Chlorinated solvents Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 7.546231842 7.583376586 7.494773542 7.802482826 7.808227762 7.912063392 8.096371987 7.864572972 119962495 pstS Stress Phosphate limitation Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 7.343917151 7.179359927 6.85172895 6.944000535 7.52259327 76803727 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 7.977832826 8.274720558 7.756524044 7.680000631 7.830778226 7.487132709 7.88119727 7.91918704 7.92198193 7.820036814 7.746003009 110225016 gyrB other category gyrB Streptococcus intermedius superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 8.091012163 8.495328874 7.625821435 7.650819422 7.257375087 7.153543707 7.735041897 7.331869243 7.623492302 7.661940667 154161346 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 7.680867702 7.700550151 7.443726495 7.57801266 8.055363889 7.703827525 7.880422245 7.735907707 262298816 phoB Stress Phosphate limitation Acinetobacter radioresistens SH164 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter radioresistens; 8.071652855 8.351023166 7.269140489 7.070177051 7.315629182 7.425521239 7.417589717 7.219483075 7.089768087 7.975339826 256362548 fnr Stress Oxygen stress Catenulispora acidiphila DSM 44928 7.377484973 7.37492236 7.646117843 7.353539679 7.343225991 7.787306469 7.484468461 7.628245537 7.527037887 159037274 fnr Stress Oxygen stress Salinispora arenicola CNS-205 8.140489123 8.229429445 7.953768592 7.895452429 7.719631935 7.671429091 8.276274031 7.897901299 8.297302373 7.925913808 8.066581021 228992734 ppk Phosphorus Phosphorus utilization Bacillus pseudomycoides DSM 12442 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pseudomycoides; 7.794136412 7.278508228 8.102221189 7.573905859 7.183270232 7.726266482 78696302 phn Organic Remediation Herbicides related compound Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 6.864521396 7.401795419 6.995650635 7.078361404 7.809094305 77389452 catechol_B Organic Remediation Aromatics Other aromatics Rhodobacter sphaeroides 2.4.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 8.259379307 8.4032296 8.601565212 8.615936241 8.238346607 8.786779043 8.65782178 8.496725945 8.792056471 8.443024109 8.193975606 32308067 narG Nitrogen Denitrification uncultured bacterium 8.393696443 8.561545005 8.39236331 8.346747872 8.900840191 8.262287035 8.624385378 8.544149014 8.479970991 16501906 pstB Stress Phosphate limitation Salmonella enterica subsp. enterica serovar Typhi 7.470517464 7.457163194 89096276 linC Organic Remediation Pesticides related compound Bacillus sp. NRRL B-14911 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 8.070692397 8.265563989 7.316669222 7.280632266 7.736825914 7.816218804 7.215533254 7.882376462 7.658862377 7.73437558 7.675544191 163857466 MATE_antibiotic Antibiotic resistance transporter Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 8.334278523 8.784059634 8.123986221 8.249368036 7.789204026 7.526784558 8.012271032 8.120987777 7.93937367 8.165227947 15920801 peroxiredoxin Bioleaching Metal Resistance Sulfolobus tokodaii str. 7 7.857704395 8.097135973 545132 pilin virulence pilin Pseudomonas aeruginosa superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.108118482 7.062926445 7.319989819 7.257120511 7.159934073 7.080564685 7.075442844 7.05332612 118168207 mhpC Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium avium 104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 7.678996055 7.650609254 7.521140003 7.421401712 7.463684343 8.111965536 7.527757361 7.327877593 7.581768929 213926938 AmiE Organic Remediation Aromatics Other aromatics Pseudomonas syringae pv. tomato T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 8.861829592 8.980294171 8.056662806 8.076000087 8.19216462 8.483622429 8.020818228 8.727304366 8.188396589 7.885926172 8.064048949 54027301 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 8.240223093 8.408605101 8.53348854 8.503258298 8.092094189 8.179951635 8.599483975 8.547936932 8.099426749 7.723617782 8.094826283 220924088 phn Organic Remediation Herbicides related compound Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 8.069768743 7.76422293 7.935673373 7.858131434 7.846514294 8.308237999 8.274300812 8.396692596 7.850556692 157375286 cytochrome Energy process Energy process Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 8.504024186 8.565105444 8.11713383 8.068713254 7.862954623 7.72963453 7.747540445 7.582109973 7.630597508 8.021073436 76667357 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.976754653 8.203532786 7.224779723 7.243418191 7.176580676 6.967354516 7.616104049 7.117468647 7.500617323 126105501 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 6.569843475 7.551624337 19909669 gyrB other category gyrB Halorhodospira halophila superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira; 7.092085368 7.457108278 214031262 gyrB other category gyrB Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8.234538391 8.286478315 7.817961983 7.598552158 7.498382899 7.66974451 7.411261825 7.556583377 7.646568114 7.57807609 78222925 pimF Organic Remediation Aromatics Aromatic carboxylic acid Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 7.176227917 7.283536713 7.029622582 7.515248335 7.058964799 7.230962155 124514371 biotin_carboxylase Bioleaching Carbon fixation Leptospirillum sp. Group II UBA 7.92187164 8.236892591 7.522536969 7.322908455 7.164371946 7.133713778 6.900603395 7.526598633 209516694 phtA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.877035333 8.033889924 7.624996251 8.196975655 8.061623253 8.028304189 8.130839908 7.708572074 115423046 Arylest Organic Remediation Aromatics Other aromatics Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 8.20929302 8.305903651 8.251758739 8.464432687 8.3932761 8.308524058 8.398047226 8.308663563 73762754 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.584303753 8.015230577 8.15347896 7.800256697 8.020595358 7.868201998 7.845641248 7.975929371 229326653 clpC Stress Protein stress Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 7.614512914 7.73454545 6.986319073 7.351905136 7.806306864 7.672036888 7.489272156 7.617581832 118424415 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.701768562 7.745798467 7.780081744 7.581849025 7.83767136 7.955749803 7.857026839 7.968293917 262299672 AceB Carbon cycling Carbon degradation others Acinetobacter radioresistens SH164 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter radioresistens; 8.023249529 8.10535144 82411279 Catechol Organic Remediation Aromatics Other aromatics Nitrosospira multiformis ATCC 25196 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira;species:Nitrosospira multiformis; 7.933663626 8.092176624 7.740837423 7.650059427 7.233723637 7.22593001 7.289787794 7.769072445 7.390247905 7.155364044 90579390 AceB Carbon cycling Carbon degradation others Vibrio angustum S14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium angustum; 8.391515528 8.050275814 8.174885439 8.419924637 8.48273514 8.851941713 8.663565784 8.574094783 8.559473449 8.914725912 8.839582422 86360704 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.257165208 8.582601714 8.353020214 7.792739687 8.574057976 7.952525982 8.290016872 8.31963493 8.698018575 195975313 cellobiase Carbon cycling Carbon degradation Cellulose Streptococcus equi subsp. zooepidemicus MGCS10565 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus equi; 8.277583205 8.738540919 7.870615826 7.504072068 7.722779376 71278952 fnr Stress Oxygen stress Colwellia psychrerythraea 34H 7.89337108 8.011943811 7.560277178 7.621142499 7.605947672 7.085723958 7.169760473 7.635360971 7.469967611 7.476791387 7.299527423 32698489 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas paucimobilis superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.028046153 8.343921288 8.778047046 8.857204421 8.58568546 8.812174315 8.73364565 8.616042022 8.92588638 87121087 oxyR Stress Oxygen stress Marinomonas sp. MED121 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 7.655681492 8.252309918 6.681637584 7.032625216 6.963795994 6.758379029 86574728 oxyR Stress Oxygen stress Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.144372647 7.813806667 7.5305822 8.213636405 7.986455691 8.265303913 8.190093446 8.005793285 7.632324715 241461853 APS_AprA Sulphur adenylylsulfate reductase Allochromatium vinosum DSM 180 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 7.791167716 7.842434287 7.999724009 7.468786899 7.672880503 7.914156699 7.494855122 7.970548728 7.610918047 98978433 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Sphingopyxis alaskensis RB2256 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 8.02951585 8.155848159 7.826462595 7.973316829 8.202751823 7.85616419 8.109310693 7.931145615 7.466569768 196480672 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 8.26774359 8.285879953 7.947903823 8.462508756 8.577473699 8.214962276 8.48734569 8.446903895 8.399537821 254489200 vanA Carbon cycling Carbon degradation Others Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.027200989 8.36043629 8.12022817 8.119981223 8.499083286 8.438859413 8.630191104 8.492499487 8.422673797 18034331 dsrA Sulphur sulfite reductase Desulfonatronovibrio hydrogenovorans superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfonatronovibrio; 7.957867414 8.21300413 7.563981865 7.548360163 7.548248804 7.222620024 7.497456495 7.787910296 7.758007948 7.448492892 7.625561261 72394883 nifH Nitrogen Nitrogen fixation Methanosarcina barkeri str. fusaro superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina barkeri; 8.042832089 8.199301865 7.777479058 7.728160131 7.489692457 7.4097497 7.641746647 7.946325441 7.729921543 7.731684758 7.844552371 145251459 pectinase Carbon cycling Carbon degradation Pectin Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.713095109 7.730618535 7.444370169 7.615658728 7.654819902 7.81072768 7.507266688 7.720547428 7.477386677 254448586 phoB Stress Phosphate limitation gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.446942558 8.186304524 7.941444346 8.27945333 8.172877168 8.145178667 7.952519424 8.013029395 7.855107385 99083207 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 6.963190157 7.067375341 217968787 sigma_70 Stress Sigma factors Thauera sp. MZ1T superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 8.22651972 8.478750274 7.807948283 7.560370004 7.829453665 7.60312719 7.535944979 8.162607461 7.89907437 7.751485866 7.999431174 241463314 sox Sulphur Sulphur oxidation Allochromatium vinosum DSM 180 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 9.468503641 9.448376818 9.713410323 88778959 cap virulence capsule Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 7.231625759 7.145524963 7.285473018 6.813231058 6.970144956 7.42387017 6.912816844 7.067659812 6.87391914 39937526 sox Sulphur Sulphur oxidation Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.070209985 8.243569847 8.115378651 7.568825074 8.436820287 7.983522232 8.328719967 8.830023424 118471873 linB Organic Remediation Pesticides related compound Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.074497089 8.231045169 7.756591788 7.340573821 7.421433063 7.520610891 7.336112338 7.816963528 7.506628656 7.358311285 156053616 CopA Metal Resistance Copper Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 7.488441865 7.451766025 7.619015303 7.605354842 7.36573398 7.853699374 7.742254798 7.781435397 7.498916692 110585921 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 8.009806117 8.283825316 7.88472628 7.899307908 7.72264925 7.338729713 7.59204426 7.691350023 12725048 CadA Metal Resistance Cadmium Lactococcus lactis subsp. lactis Il1403 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Lactococcus;species:Lactococcus lactis; 8.024002173 8.326839182 7.224135569 7.247153383 7.847191206 7.876986751 7.0938528 7.831377222 7.355985934 7.350306285 7.518373638 212661519 ppx Phosphorus Phosphorus utilization Bifidobacterium catenulatum DSM 16992 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium catenulatum; 7.30149034 7.400190442 7.635239314 7.910901706 7.500676841 7.639391485 7.600168679 7.449347777 7.461591985 149938354 gyrB other category gyrB Parabacteroides distasonis ATCC 8503 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides distasonis; 8.058207398 8.360832463 7.670055611 7.544355557 7.466532837 7.574305245 7.541934308 7.919216908 7.653956626 7.663769842 7.868922172 113729835 glucoamylase Carbon cycling Carbon degradation Starch Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 7.97778643 8.140985299 8.133619399 7.993397925 7.791437627 7.556239324 7.81157237 8.170581846 7.600490533 7.571087084 7.618442179 81300259 pstB Stress Phosphate limitation Synechococcus elongatus PCC 7942 7.909998776 7.914773835 7.742060923 7.302022277 7.65668344 7.645212493 7.390894895 7.59890192 7.775042692 134099780 pcc Carbon cycling Carbon fixation Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 7.743023198 7.608301886 7.555755847 7.644223526 7.542576653 7.555930142 145300449 ChrA Metal Resistance Chromium Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 8.058848682 8.356511563 7.42080475 7.15818615 7.57310315 7.334785537 7.190509644 7.328456504 7.185320756 188524147 gyrB other category gyrB Ureaplasma urealyticum serovar 12 str. ATCC 33696 superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Mycoplasmatales;family:Mycoplasmataceae;genus:Ureaplasma;species:Ureaplasma urealyticum; 7.769887238 7.630230562 7.466341354 7.818414431 7.883779763 7.584076174 7.893051191 89069700 atzB Organic Remediation Herbicides related compound Oceanicola granulosus HTCC2516 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 8.28239581 8.596263405 8.684684336 8.437900066 8.793583971 8.342848393 8.260088754 8.747631555 8.323092483 121517325 CopA Metal Resistance Copper Candidatus Desulfococcus oleovorans Hxd3 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus;species:Desulfococcus oleovorans; 7.848142657 7.463771631 7.563537597 7.849938945 7.535411022 7.933536958 7.717577411 7.445378047 7.554357493 212559406 clpC Stress Protein stress Anoxybacillus flavithermus WK1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Anoxybacillus;species:Anoxybacillus flavithermus; 7.683427435 7.542119163 7.901328716 7.823549677 7.517607403 7.630443613 7.621630437 7.647641738 206576269 nmoA Organic Remediation Aromatics Nitoaromatics Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 7.989895164 8.051890282 7.709819842 7.912063467 7.94038509 7.928653077 7.899344402 7.860053263 197779556 Tet Antibiotic resistance other Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 7.278006348 7.377776939 7.141328443 7.132842428 7.447039813 7.357967691 1771868 napA Nitrogen Dissimilatory N reduction unidentified 7.397329928 7.283759272 7.324851387 6.829778948 7.558073969 7.461799242 7.202404348 149808767 sigma_38 Stress Sigma factors Moritella sp. PE36 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Moritellaceae;genus:Moritella; 8.340973443 8.348770551 66801929 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 8.056912797 8.139915141 8.264864349 8.045608626 7.808015866 7.855530575 7.74960073 7.931725191 7.805628653 7.634225439 7.83583555 119960850 obgE Stress Radiation stress Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 8.19249682 8.594113612 7.912961473 7.773084664 8.108056137 7.574409994 8.15039973 7.43126199 7.668593251 7.855374562 116230046 sigma_24 Stress Sigma factors Candidatus Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 8.207537129 8.30848992 7.851073553 7.848299051 7.669454424 7.816408111 7.730233697 7.915998005 7.73705904 7.666787523 7.173715595 161392240 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 8.431899956 8.444478927 7.677400403 7.760595479 7.925654065 8.293170493 7.693059138 7.734638631 7.406925753 7.725960584 21225706 xylC Organic Remediation Aromatics BTEX and related aromatics Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 7.931882178 7.977435615 7.815945217 7.410749596 8.111285546 7.62675029 7.89293653 7.57948863 7.983210411 260061837 ara Carbon cycling Carbon degradation Hemicellulose Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 8.037104532 8.063608089 7.082357548 7.190713061 7.478330269 7.575162731 7.461549767 7.390086147 7.060016406 7.310015347 146191410 dehH109 Organic Remediation Chlorinated solvents Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.731202641 7.825195309 8.309749294 7.773048367 8.358565468 7.414140458 7.66593296 7.583685934 238703174 SMR_antibiotics Antibiotic resistance transporter Yersinia aldovae ATCC 35236 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia aldovae; 7.724720936 7.571792907 7.533570917 7.412134302 7.283733696 7.276839674 7.531304329 46519991 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.400545796 8.67241715 8.045093736 7.874365311 7.655653836 7.866149994 7.825670857 7.916995869 7.730126428 8.098657658 262184006 SMR_antibiotics Antibiotic resistance transporter Corynebacterium aurimucosum ATCC 700975 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium aurimucosum; 7.330818248 7.042008322 39995339 alkK Organic Remediation Others Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 7.488664205 7.588145356 7.619204947 7.787118271 7.450929014 7.704358055 7.506131022 7.467845577 7.72819313 189500174 pstB Stress Phosphate limitation Chlorobium phaeobacteroides BS1 7.642343609 7.667467878 8.032043585 6.992256179 7.137793868 7.473769901 7.742185102 73762818 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.802162289 7.983978883 3724170 bco Organic Remediation Aromatics Aromatic carboxylic acid Thauera aromatica superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 8.4029422 8.70744508 8.097975455 7.823739873 7.959886404 7.765070115 7.698324456 7.770806181 8.050678995 8.21404251 240144568 ara Carbon cycling Carbon degradation Hemicellulose Roseburia intestinalis L1-82 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia intestinalis; 8.352779222 8.290677479 7.534441277 7.412601372 7.385474378 7.153296459 7.083166078 7.417412745 7.012430566 7.607600685 83643830 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 7.90029418 8.32633014 7.752060718 7.703387312 7.511145139 7.626214213 7.632901388 7.840263093 7.574823503 7.604022798 7.65815397 118437884 proV Stress Osmotic stress Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 7.594577411 7.421523347 8.009380392 8.239260147 7.538593223 7.851638441 7.523222146 7.550611898 8.201732479 189191852 katE Stress Oxygen stress Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7.862358141 8.15347706 7.357854704 7.300230544 7.092063862 6.749820613 7.123373169 7.407235815 7.249998594 6.931638087 7.184914549 34604742 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.183434548 8.195371694 8.272098472 8.342416307 7.94167923 7.941050083 7.849891308 8.175877295 7.901119349 7.969414079 7.761975776 196482334 tfdA Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 8.504865902 8.356714979 8.126296023 8.236112937 8.022266612 8.346375132 8.144409004 8.183814076 7.893908074 8.069591224 7.953150483 85823035 glnA Stress Nitrogen limitation Roseobacter sp. MED193 7.053355219 7.472633986 7.368186888 6.958279841 6.953470699 7.562401663 7.035154728 7.135786339 126637924 pstB Stress Phosphate limitation Shewanella loihica PV-4 7.760505211 8.040756645 7.379251212 7.48418385 7.229423558 6.970444545 7.184474372 7.672228065 7.507070429 7.002061164 7.237089616 187720241 ArsC Metal Resistance Arsenic Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8.310354586 8.177456347 7.743559056 227948499 glx Carbon cycling Carbon degradation Lignin Meiothermus ruber DSM 1279 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 8.839681762 8.736236721 8.630761225 8.459571423 8.517888684 8.402647761 8.377555566 8.837802246 73541078 Arylest Organic Remediation Aromatics Other aromatics Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.818777695 7.984527121 7.203175145 7.348524434 7.241083412 7.199677841 7.134843849 7.531275031 7.252052546 7.452263129 7.400102057 256651833 dnaK Stress Heat shock Acetobacter pasteurianus IFO 3283-01-42C 7.846707944 8.176796863 7.444704148 7.431779039 7.328907929 6.891493895 7.365403785 71557332 ZntA Metal Resistance Zinc Pseudomonas syringae pv. phaseolicola 1448A 7.996315989 8.23519884 7.523203182 7.206727922 7.393264301 7.307340933 7.814177238 7.364081007 7.724916025 76558660 pimF Organic Remediation Aromatics Aromatic carboxylic acid Natronomonas pharaonis DSM 2160 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natronomonas;species:Natronomonas pharaonis; 7.986094863 7.98961523 8.324244897 8.094982317 7.791734086 7.997988208 7.991013117 8.228388505 8.12436355 8.045613728 7.662147997 225021265 sigma_70 Stress Sigma factors Corynebacterium matruchotii ATCC 33806 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium matruchotii; 7.693157999 7.783229677 7.616442797 7.847884725 8.117645916 8.001524457 8.31836906 8.139720803 7.955903599 160936141 pstB Stress Phosphate limitation Clostridium bolteae ATCC BAA-613 8.420004836 8.376157059 8.276490438 8.303463692 8.159280652 8.166318187 8.686070234 8.445151452 8.453849933 8.412205631 8.142084758 145322396 pchCF Organic Remediation Aromatics BTEX and related aromatics Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 8.543457099 8.327773984 8.208376467 8.251620316 8.332226042 8.105980139 8.229678846 7.963396222 23330204 cumA Organic Remediation Aromatics Other aromatics Sphingopyxis macrogoltabida 7.746190335 7.484583688 7.609437541 7.718373266 7.732968848 247546322 ara Carbon cycling Carbon degradation Hemicellulose Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 6.968712717 7.252753414 6.999800701 7.364761971 83026038 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 7.696702428 8.006961731 8.663444084 7.952215205 8.510546988 8.180603122 8.206929514 7.584679607 16506180 nasA Nitrogen Assimilatory N reduction uncultured marine bacterium superkingdom:Bacteria; 7.279454748 7.264544855 7.35353278 7.073495518 7.010906163 7.587390326 7.097382367 6.864837224 6.92830905 110677819 hrcA Stress Heat shock Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 7.837345243 7.139439351 7.708119248 7.315492773 7.911276344 7.808288223 7.818158995 8.216016863 8.313887232 46132 BchY other category chlorophyllide reductase Rhodobacter capsulatus 8.195334754 8.324611383 8.348596353 8.292432616 7.958088569 8.133864579 8.701686214 8.288580156 8.493265725 8.431633039 8.605528933 209502506 Catechol Organic Remediation Aromatics Other aromatics Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.431480521 7.384113048 7.55018212 7.563615533 7.356881083 7.734784315 7.31710396 7.189274897 7.127272741 193201388 scaffold Bacteria phage STRUCTURAL Klebsiella phage K11 order:Caudovirales;family:Podoviridae;genus:T7-like viruses; 7.854967147 7.710121624 7.683004236 7.411028071 7.990682614 7.677655738 7.892845273 91785305 alkK Organic Remediation Others Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.884197189 7.907661658 7.765953002 8.010546094 8.272451905 8.207961819 8.234350339 7.833586858 7.779906833 71395692 cumA Organic Remediation Aromatics Other aromatics uncultured bacterium 7.202039675 7.310881369 10640685 merP Metal Resistance Mercury Thermoplasma acidophilum superkingdom:Archaea;phylum:Euryarchaeota;class:Thermoplasmata;order:Thermoplasmatales;family:Thermoplasmataceae;genus:Thermoplasma; 7.174998137 7.731156626 7.712945622 7.290544175 8.136414641 7.491271948 7.851183501 8.059557214 17942392 pcpE Organic Remediation Herbicides related compound Burkholderia cepacia superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.583104477 8.394295943 7.876004758 7.916066116 7.958282146 7.585235188 8.057281303 7.923204983 7.887321798 72122661 nbaC Organic Remediation Aromatics Nitoaromatics Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.418961792 8.297277463 7.853333118 8.101397219 7.765582425 8.092426603 8.552427454 8.238156266 7.72116916 8.185430215 75755522 nirK Nitrogen Denitrification Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.504484232 7.341969809 7.5401641 7.475535282 7.654364925 7.910489282 7.82540266 7.544715114 7.541956563 71914955 AceB Carbon cycling Carbon degradation others Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 8.283336396 8.077738372 8.27153207 8.059112161 7.719531451 7.952539284 7.92504217 8.376650102 8.059618653 7.923067939 7.87217916 238786269 B_lactamase_C Antibiotic resistance Beta-lactamases Yersinia bercovieri ATCC 43970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 8.232851827 8.422304284 7.765244818 7.925039524 8.16310056 8.016154006 7.564784676 8.226891106 7.981989197 8.173262127 8.190929521 119451466 TehB Metal Resistance Tellurium marine gamma proteobacterium HTCC2143 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.210510312 7.562247618 7.07460993 7.292494538 7.32706101 7.558685953 7.654366493 7.727713395 56476743 ebdABC Organic Remediation Aromatics BTEX and related aromatics Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 8.036599734 8.174067422 8.21023056 7.8468366 7.990458592 8.034537133 8.071566823 8.355859162 219543828 CopA Metal Resistance Copper Chloroflexus aggregans DSM 9485 8.801865149 8.844556391 8.807234552 8.660899807 8.974753031 8.81867993 9.003428333 8.938386536 9.156981583 18160080 pstB Stress Phosphate limitation Pyrobaculum aerophilum str. IM2 8.012727306 8.447640958 7.83102793 7.886618724 8.431771293 8.500696482 8.442997746 8.133411129 133739850 obgE Stress Radiation stress Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 8.095245486 8.40950584 7.695339181 7.672295403 7.631136798 7.404966043 7.19306643 8.113211986 7.661030021 7.680100056 7.691727993 167588536 phtA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia ubonensis Bu superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ubonensis; 8.352001065 8.717954156 8.236333671 7.981740416 8.290354429 8.499693919 8.042173821 8.698555966 8.195679644 8.176702541 8.151742313 212171512 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 7.553564655 7.618908218 7.53077815 7.363385019 7.817004933 7.948152664 7.797738415 7.419943723 7.828791967 212171502 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 7.816403168 8.008784465 8.027033022 7.874599389 7.519040087 7.998028258 7.58152707 7.918696848 7.819511414 83318826 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.485327406 7.738406507 7.919473182 7.82444556 7.773808785 8.237339512 7.997903741 8.032266309 8.09210857 77544355 pstB Stress Phosphate limitation Pelobacter carbinolicus DSM 2380 7.004826035 7.239715909 7.565907706 6.844471313 7.691936342 7.353330205 7.567009334 134288321 AceB Carbon cycling Carbon degradation others Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 7.496395669 7.597892507 7.506249544 7.406925027 7.631595589 7.565399411 7.280600969 29346827 nrfA Nitrogen Dissimilatory N reduction Bacteroides thetaiotaomicron VPI-5482 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides thetaiotaomicron; 8.91587551 8.833373614 8.578400195 8.409572434 8.290484248 8.154387993 8.072096014 8.434020301 8.448759524 8.538837317 53803762 FTHFS Carbon cycling Acetogenesis Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 7.77030874 7.265616605 7.505445151 7.754430485 7.75326537 8.031820123 7.480324829 7.307202245 118171961 linC Organic Remediation Pesticides related compound Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 7.796365803 7.63954862 7.729091589 7.703059062 7.981433557 7.933674418 7.919290531 8.108668127 8.097402837 110826482 APS_AprA Sulphur adenylylsulfate reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.825506578 8.097550224 145320300 atzC Organic Remediation Herbicides related compound Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 8.631681778 8.963736848 8.105548454 7.925145032 8.129312854 7.863906672 8.010870915 8.169012195 8.201073389 8.218230712 262200737 B_lactamase_C Antibiotic resistance Beta-lactamases Gordonia bronchialis DSM 43247 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 8.285647458 8.338423198 8.309116064 8.460124195 8.515649111 8.415435268 8.739415076 8.687762265 8.111353484 83952150 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 8.620831084 8.566708327 8.703865479 8.797801008 8.69027805 8.594124519 8.953363317 8.356242096 8.834631239 8.847806845 8.161045494 99083009 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.204897912 7.263196246 7.310124311 7.276085123 7.511814514 7.348123988 7.195612985 7.501861663 69297606 ChrA Metal Resistance Chromium Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.662833102 7.897210219 7.596790218 7.855663589 7.522758982 8.050300909 7.38186022 7.760677908 78221755 cytochrome Energy process Energy process Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 7.517846379 7.440397267 7.622261779 7.296269637 8.039688305 7.214515819 7.392647315 7.493572059 134096396 CusA Metal Resistance Copper Herminiimonas arsenicoxydans 7.618074871 7.782890123 7.629008933 8.08148742 7.910070366 7.255493177 7.982867807 7.914066616 8.168423069 94471305 narG Nitrogen Denitrification uncultured bacterium 7.713063579 7.554225305 7.392814068 7.558830051 7.595181341 7.59171586 7.488403076 270307563 Ni_Fe_hydrogenase Energy process Energy process Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.919110701 8.328155565 7.266408729 7.398122053 212661539 ara Carbon cycling Carbon degradation Hemicellulose Bifidobacterium catenulatum DSM 16992 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium catenulatum; 7.778547887 7.604390648 7.599563399 7.385330339 7.675403697 8.092013107 7.562156696 7.63019239 7.646476527 115421706 ophC Organic Remediation Aromatics Aromatic carboxylic acid Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 8.421500401 8.568676942 8.16581542 8.0678984 8.105462596 7.676754668 8.040917163 7.948462308 7.981227904 8.258544164 8.368787541 242774920 MFS_antibiotic Antibiotic resistance transporter Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 7.952043705 7.745698126 7.513926492 7.471917664 7.868381096 7.870666056 7.664434808 7.09225994 7.276229208 19075187 amyA Carbon cycling Carbon degradation Starch Schizosaccharomyces pombe 972h- superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Schizosaccharomycetes;order:Schizosaccharomycetales;family:Schizosaccharomycetaceae;genus:Schizosaccharomyces;species:Schizosaccharomyces pombe; 7.86691264 8.368653324 7.654546176 7.887079885 7.68613312 7.400512541 7.40452927 8.186330093 7.667226168 7.576682651 7.546974269 145409111 CopA Metal Resistance Copper Caldicellulosiruptor saccharolyticus DSM 8903 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Caldicellulosiruptor;species:Caldicellulosiruptor saccharolyticus; 7.332417068 7.482718044 7.497926403 7.424024202 6.845634703 8.031772419 7.038808817 7.087767337 7.293095494 167757720 groEL Stress Heat shock Clostridium scindens ATCC 35704 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium scindens; 7.375288667 7.437528568 7.333028958 112821609 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas sp. KA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 7.617800968 7.351925826 21213046 B_lactamase_C Antibiotic resistance Beta-lactamases Enterobacter amnigenus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 7.95553598 7.955151502 7.384970855 7.375109882 7.411468484 7.380585759 7.140165815 7.919626008 7.62571287 7.833644165 7.848004393 84696003 nagK Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 7.40045682 7.472436138 7.646095063 7.066192592 8.005004823 7.153033464 7.717878565 118173833 hly virulence hemolysin Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8.987775194 8.756516713 8.490969848 8.309761664 8.436080129 8.836686328 8.891492098 8.452048491 8.593363736 56398965 nifH Nitrogen Nitrogen fixation Paenibacillus wynnii superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 8.004107657 8.188015212 7.293428242 7.134773683 7.233858867 6.735150738 6.734284764 7.370526708 6.931338394 6.923314376 7.218708761 110562632 amyA Carbon cycling Carbon degradation Starch Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 8.148766178 8.233370711 7.779242387 7.65714914 7.710922388 7.192686507 7.254191553 7.722461828 7.201198213 7.14321693 7.533966458 119492774 endochitinase Carbon cycling Carbon degradation Chitin Neosartorya fischeri NRRL 181 8.332362065 8.431441758 7.66459357 7.753740998 7.455698859 7.450562814 7.95070816 7.959482229 7.603959036 7.662779353 7.785072141 13816283 sulfate_adenylyltransferase Bioleaching Sulphur Sulfolobus solfataricus P2 8.094771449 8.401869655 7.684879432 7.357088498 7.550607652 7.112136386 7.002002868 7.619448566 7.378843145 7.019734473 7.519573522 163857458 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 8.222282 8.065450166 8.132035707 8.163139889 7.903786815 8.031647432 8.050177715 8.316270666 8.418897514 8.121241515 8.058356562 260634436 oxyR Stress Oxygen stress Prevotella sp. oral taxon 472 str. F0295 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella sp. oral taxon 472; 8.159007351 8.268054174 8.170307564 7.991308777 7.99701289 7.589500776 7.583894332 7.963053524 7.754723889 8.04906687 8.01025555 227350611 ppk Phosphorus Phosphorus utilization Lactobacillus vaginalis ATCC 49540 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus vaginalis; 7.745841569 7.866354481 7.578577764 7.559261286 7.512054433 7.985239206 7.773446547 7.643661953 7.62988903 219852885 mcrA Carbon cycling Methane Methane production Candidatus Methanosphaerula palustris E1-9c superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;genus:Methanosphaerula;species:Methanosphaerula palustris; 7.760712257 7.940729416 7.908193664 7.925009246 8.511891072 7.853066739 8.71087537 8.481483709 8.303934273 87286309 phoB Stress Phosphate limitation Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 8.20861402 8.443680162 7.650862665 8.098805748 7.847965826 7.902869474 7.906319476 7.598085902 7.944948968 7.646300035 194365753 ChrA Metal Resistance Chromium Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 7.577417635 7.703416747 7.371585184 7.50152374 7.654874213 7.802014887 7.953595136 54019345 ArsC Metal Resistance Arsenic Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 8.219962364 8.163957952 7.931860503 8.059203403 8.443316284 8.402597929 8.185455816 7.731333247 7.948395604 15127833 msmABCD Organic Remediation Others Marinosulfonomonas methylotropha superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Marinosulfonomonas; 8.276724216 8.307513709 7.910621788 8.101214678 7.875043368 7.916795804 8.502470552 8.14145929 8.596969927 8.495589934 8.37184402 94471205 narG Nitrogen Denitrification uncultured bacterium 8.222275672 8.346571666 8.391094683 7.856030998 8.581723781 8.302863718 8.580369037 8.669259372 8.040097087 260424483 iuc virulence aerobactin Cronobacter turicensis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter; 8.02830797 8.031990577 7.501126379 7.784294641 7.851907244 8.065170294 8.151180322 7.11544276 7.194993295 7.550704772 261338604 amyA Carbon cycling Carbon degradation Starch Bifidobacterium gallicum DSM 20093 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 7.407981861 7.745695616 7.226103115 7.606082824 7.622276685 7.456252091 7.41914005 7.778239837 118667595 ArsC Metal Resistance Arsenic Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.627700909 7.772054251 8.046517489 7.664105884 8.101119458 8.04726546 8.09996937 8.157105893 8.019131024 16501480 pstB Stress Phosphate limitation Salmonella enterica subsp. enterica serovar Typhi 7.441240232 7.42881756 7.650423112 7.05592129 7.343033202 7.204217542 7.452844731 15621854 heat_shock_protein Bioleaching other category Sulfolobus tokodaii str. 7 7.538388113 7.717984793 8.044041198 7.59874745 7.673555996 8.045611626 7.656735113 7.666907312 7.567561469 239636167 hly virulence hemolysin Staphylococcus warneri L37603 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus warneri; 7.782837335 7.940074188 7.710298472 7.893466417 7.628205891 7.626468029 7.97026807 7.74344855 91698111 ChrA Metal Resistance Chromium Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 8.132679121 8.345954956 7.382116342 7.739895879 8.12468306 6.847838662 8.084661636 7.463584509 7.437862593 7.646472426 224965357 SMR_antibiotics Antibiotic resistance transporter Erwinia pyrifoliae Ep1/96 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia pyrifoliae; 7.023960512 7.17153489 7.194534669 7.023495984 6.902924784 7.741826562 7.218523035 6.91994561 7.249307376 91698667 nagG Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 7.551711682 7.509007178 7.493295313 7.742611095 7.436626314 7.381821548 7.533381779 7.912289339 86555017 nifH Nitrogen Nitrogen fixation Synechococcus sp. JA-3-3Ab superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.184839172 8.166798924 8.051780379 8.167023411 7.914753749 7.641683201 8.100431834 8.052004323 8.19885593 7.819737382 7.943266904 82716357 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.466036458 6.828198412 7.298517279 6.944873818 6.544600505 6.87868975 7.406387315 52787877 bglP Stress Glucose limitation Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 8.426521359 8.512516004 8.017388281 8.060608726 7.916618887 7.60520199 7.704191807 7.942828697 7.725530135 8.09478527 238852173 katE Stress Oxygen stress Clavispora lusitaniae ATCC 42720 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Metschnikowiaceae;genus:Clavispora;species:Clavispora lusitaniae; 8.078685546 8.229044364 8.103243364 8.258691761 8.116530696 8.362683594 8.130056468 8.286345441 8.370140316 8.346817641 8.417307282 110818894 Catechol Organic Remediation Aromatics Other aromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.210546702 7.975440997 8.161311337 8.479986681 7.936207951 8.00316199 7.664473943 7.756555237 7.709783981 13898421 dsrA Sulphur sulfite reductase uncultured napthalene mineralizing bacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 7.536162632 7.758571102 7.786760349 7.403041756 7.764179338 7.774036395 7.742926912 7.586206837 7.74411202 83972412 nosZ Nitrogen Denitrification uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 8.138518729 8.024907156 7.688360734 7.873296975 8.065831099 8.227509216 8.196004947 8.253026926 8.032713729 153815239 cda Carbon cycling Carbon degradation Starch Ruminococcus torques ATCC 27756 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus torques; 8.729172203 8.630535453 8.381462038 8.395452498 8.419382477 8.525905039 8.756585834 8.547526828 8.609202543 8.565525895 8.906097741 194334969 ppx Phosphorus Phosphorus utilization Prosthecochloris aestuarii DSM 271 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Prosthecochloris;species:Prosthecochloris aestuarii; 7.796584415 7.811087826 7.396505547 7.122582692 7.64557703 7.607617558 7.504620251 7.26074508 7.554032969 281422619 sigma_24 Stress Sigma factors Prevotella copri DSM 18205 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella copri; 8.185677223 8.226134975 7.965222418 8.079007681 7.995673031 7.959743468 8.423792079 8.237049342 8.424724768 8.322726517 8.226471851 163670227 fnr Stress Oxygen stress Chloroflexus aurantiacus J-10-fl 7.259747032 7.521426703 7.575704652 7.972270212 7.334236498 7.260576994 7.342663518 151575155 CadA Metal Resistance Cadmium Ralstonia pickettii 12D 8.079659313 7.984943944 7.915009689 7.613926673 7.794783921 7.487152943 7.476760998 7.956598914 7.760448667 7.774746124 7.630015786 89352997 benAB Organic Remediation Aromatics Aromatic carboxylic acid Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 7.78720243 7.785974572 7.555835937 7.62348535 7.750327101 8.32195459 7.862417007 7.460384582 7.644409706 42409755 gyrB other category gyrB Wolbachia endosymbiont of Drosophila melanogaster superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales;family:Rickettsiaceae;genus:Wolbachia; 8.19766256 8.18596085 8.110122756 7.940646112 7.732920284 7.812790721 8.380149194 8.210279149 8.286850736 8.159765889 8.392319762 1236529 nplT Carbon cycling Carbon degradation Starch 8.597605227 8.716272225 8.616771503 8.609800758 9.018883287 8.47867028 8.771345778 8.723025015 8.380102297 212560205 pstB Stress Phosphate limitation Anoxybacillus flavithermus WK1 7.891629685 8.009493425 4760683 contractile_central_tail_tube_protein Bacteria phage STRUCTURAL Vibrio phage KVP40 order:Caudovirales;family:Myoviridae;genus:T4-like viruses;species:Vibrio phage nt-1 sensu lato; 8.263863524 8.128591015 8.120223444 7.889352244 7.622761636 7.943720064 7.953351787 8.149022805 7.965585636 8.039296092 7.876059067 228568870 ahpC Stress Oxygen stress Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 7.095111411 7.416304484 7.178707042 7.142803437 7.736858445 83951965 nagG Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 8.118062746 8.071844973 7.476964818 7.554784674 7.917332322 7.875478199 7.836129492 7.519410867 7.511272502 238753106 pstB Stress Phosphate limitation Yersinia rohdei ATCC 43380 6.820795748 7.28532885 7.267386837 7.343507288 16078777 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bacillus subtilis subsp. subtilis str. 168 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 7.560830652 7.160901075 7.500158545 6.900508933 7.075650285 7.627558532 7.078206346 7.018176432 153186529 nmoA Organic Remediation Aromatics Nitoaromatics Listeria monocytogenes J0161 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria monocytogenes; 6.949278243 7.270973423 7.615835171 7.273275133 6.998133255 7.469291004 7.126484522 7.19953295 7.722819232 196195077 SMR_antibiotics Antibiotic resistance transporter Alcanivorax sp. DG881 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 8.413385582 8.330355631 8.091932957 8.164743876 7.922381158 7.502246774 7.322504436 7.722199965 7.587335321 7.781053922 229591076 iro virulence Pseudomonas fluorescens SBW25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.953032888 8.160136584 7.813114119 7.961288027 7.866879421 7.817124921 7.954927226 8.261362792 7.469512508 7.847503674 7.536510286 156861511 cda Carbon cycling Carbon degradation Starch Bacteroides uniformis ATCC 8492 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides uniformis; 7.282792308 7.09471474 7.203829834 6.971449146 7.330423891 7.430826948 7.30885721 7.012198889 7.495918427 238490206 endochitinase Carbon cycling Carbon degradation Chitin Aspergillus flavus NRRL3357 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus flavus; 7.248965869 7.363529872 7.485585622 7.408332892 6.931093833 7.233077466 7.035985708 220681866 amoA Nitrogen Nitrification superkingdom:Bacteria; 7.951451889 8.143002144 7.489536588 7.589525867 7.487929996 7.167661011 7.761791756 7.743531439 7.609437563 7.691642675 147830147 CadA Metal Resistance Cadmium Clavibacter michiganensis subsp. michiganensis NCPPB 382 7.921238589 8.354979132 8.487529834 8.700094488 7.152167118 7.811543131 7.847373243 8.279964881 218645701 phytase Phosphorus Phosphorus utilization Buttiauxella gaviniae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Buttiauxella; 7.685363335 7.90329072 7.901083352 8.194280201 7.88302438 8.012559272 7.974760163 8.208336684 8.106878918 56962404 alkJ Organic Remediation Other Hydrocarbons Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 7.532811335 7.718057577 7.523617894 6.986402586 7.42843453 7.925235508 7.474858402 7.272723423 7.371521565 227479409 SMR_antibiotics Antibiotic resistance transporter Helicobacter hepaticus ATCC 51449 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter hepaticus; 7.05797981 6.883996866 247536461 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 7.302756116 7.265777733 7.605605629 7.456358 7.321203336 8.020265087 7.452942139 7.357144558 7.625800947 146406366 mhpB Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 8.358982499 8.316124279 7.662365731 7.485864943 7.438828098 7.104328688 7.018438885 7.333481759 7.2380899 7.306511932 146191128 nirK Nitrogen Denitrification Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.280113976 8.315223716 8.448307222 8.4519795 8.440760878 8.488981 8.19142444 8.538965082 8.384869097 89095015 glnA Stress Nitrogen limitation Oceanospirillum sp. MED92 7.97328064 7.651289166 7.676622546 7.471930503 7.306426172 7.700483802 7.78658445 7.512767808 7.879299915 40062956 mdlC Organic Remediation Aromatics Aromatic carboxylic acid uncultured bacterium 443 superkingdom:Bacteria; 7.726612053 7.312031071 7.671826938 7.492454536 7.117569218 7.673430021 46307844 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.254111104 6.984156185 255253055 amyA Carbon cycling Carbon degradation Starch Thermoanaerobacter italicus Ab9 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Thermoanaerobacter;species:Thermoanaerobacter italicus; 7.836659361 7.701637222 7.619619632 8.035408794 7.578601281 7.481992898 119474495 iro virulence Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 8.249529236 8.458158096 7.94986487 7.733336652 8.764561244 7.961470197 8.055660716 261607377 amyA Carbon cycling Carbon degradation Starch Pectobacterium wasabiae WPP163 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium wasabiae; 8.536138732 8.721188412 7.944934444 7.993442623 8.262413333 8.471709872 7.80770572 8.476226472 7.983737537 8.11995783 7.857985861 218160222 vanA Carbon cycling Carbon degradation Others Bacillus cereus B4264 7.785476802 8.201193269 7.433786593 7.129568175 7.449381498 6.801609947 7.099520039 7.1814045 7.112958077 7.41847765 145223418 CadA Metal Resistance Cadmium Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.046658765 7.879758929 7.590904192 7.379595671 8.27315971 7.732369072 7.942886225 7.983750244 212636140 CopA Metal Resistance Copper Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 7.638364499 7.748112543 7.313208938 7.615983462 7.302263908 7.407823715 7.394701916 7.405344029 7.718396408 145231429 atzA Organic Remediation Herbicides related compound Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.83612342 7.990369925 7.157579796 7.123800452 6.697087185 7.558983576 7.112117039 7.204643033 224800906 grpE Stress Heat shock Opitutaceae bacterium TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 8.91918499 8.817380274 8.524734268 8.593451984 8.819655303 8.665081387 8.734196287 8.473302532 8.243553007 214044226 ChrA Metal Resistance Chromium Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.072780966 8.457637267 7.767384274 7.577387048 7.51334311 7.503108579 7.519147341 7.905212081 7.665730983 7.441392496 7.651411717 99083385 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.725021237 7.767935989 7.14375665 6.991927064 7.144795215 6.544952497 6.555671929 7.351886479 6.93264792 7.484118768 227111903 narH Stress Oxygen limitation Pectobacterium carotovorum subsp. brasiliensis PBR1692 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 7.478475782 7.375732476 7.034801511 7.025288116 7.418007456 7.726008885 7.366147279 7.17477881 7.125852824 264679631 iro virulence Comamonas testosteroni CNB-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.292488501 8.247935306 7.062803142 7.61441173 7.313448797 6.982035539 6.943851842 7.69578929 7.316391603 7.281122899 209519182 nahA Organic Remediation Aromatics Polycyclic aromatics Burkholderia sp. H160 7.273691701 7.137034959 7.650113253 7.426510846 7.001474056 7.705991129 7.655615561 110678192 cpnE Organic Remediation Other Hydrocarbons Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 7.46116748 7.500373745 7.334171477 7.301800056 7.174634632 7.581485372 7.274595213 7.329126777 7.335797453 34332936 primase Bacteria phage REPLICATION Vibrio phage KVP40 order:Caudovirales;family:Myoviridae;genus:T4-like viruses;species:Vibrio phage nt-1 sensu lato; 7.60603733 7.960524824 8.064545905 8.162861906 6.874598172 8.102357613 7.556695474 7.465886325 7.628811355 22203518 pchA Organic Remediation Aromatics BTEX and related aromatics Pseudomonas mendocina superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.752112589 8.031462825 8.072366358 7.982228479 8.030509004 8.294477882 8.35904658 8.101281526 91214707 pulA Carbon cycling Carbon degradation Starch Psychroflexus torquis ATCC 700755 8.291354338 8.654809554 7.84154651 7.625596035 7.485651959 7.44439594 7.144377585 7.933565678 7.276385145 7.61876555 7.642366793 171914160 NiR Nitrogen Assimilatory N reduction Verrucomicrobium spinosum DSM 4136 8.556268425 8.525657061 7.666565975 7.705125114 8.021626716 7.975936299 7.660880223 8.317355782 7.669957865 7.657012108 8.125478539 196191085 CopA Metal Resistance Copper Synechococcus sp. PCC 7335 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 6.9174455 7.179819559 7.234844642 7.207818774 7.447068658 6.888434152 7.017812705 240862964 groEL Stress Heat shock Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.649054288 7.334440966 7.582125248 7.342135274 7.966838161 7.604273748 7.858421078 7.266580108 76781065 nifH Nitrogen Nitrogen fixation Microbacterium sp. Zapt11 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium; 7.190751594 7.165476533 7.267239321 6.990945903 6.929632631 7.519381333 7.188886628 7.110199326 7.337768541 145902842 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 7.763381018 8.029158939 237729643 MFS_antibiotic Antibiotic resistance transporter Citrobacter sp. 30_2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter; 7.195654348 7.164850935 6.828596932 7.39142416 7.458452426 7.456430678 7.618676773 169851372 glx Carbon cycling Carbon degradation Lignin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 8.946990309 8.815421414 8.589434615 8.653816311 9.242323045 8.315772752 9.232905736 8.864505917 118696714 ChrA Metal Resistance Chromium Burkholderia ambifaria MC40-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 8.027084361 7.973107653 7.914556731 8.180123135 7.859119717 8.061661659 8.395806239 8.09966393 8.13812152 8.195348572 8.289047474 111150904 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 8.006394452 7.776210367 7.748771328 7.278649286 7.965034758 8.252434628 7.744027182 7.867342795 7.712921736 227242157 MFS_antibiotic Antibiotic resistance transporter Sphingobacterium spiritivorum ATCC 33300 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium;species:Sphingobacterium spiritivorum; 7.03538022 6.964116034 255336693 AceA Carbon cycling Carbon degradation others Hyphomicrobium denitrificans ATCC 51888 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 7.920866328 8.114265459 7.318630879 7.182723323 7.408630659 7.209516505 7.000628885 8.083363067 170136696 type_III_secretion virulence secretion Burkholderia ambifaria IOP40-10 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 8.110338781 8.231945312 8.045928604 8.044063869 7.774652966 7.690435211 7.844638126 8.088110777 7.695873886 7.720004331 7.761548225 121552494 ahpC Stress Oxygen stress Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 7.507919717 7.738019506 7.675710877 7.277745234 7.611406209 8.229477342 7.452036886 7.598132359 145214620 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 7.826971081 7.498930553 7.467734698 7.304548778 7.332262072 7.87010987 7.507270001 7.501875517 254473529 sox Sulphur Sulphur oxidation Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 7.391164177 7.592731505 7.370973935 7.33773812 7.586223773 7.055272419 78693194 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.995553632 8.109502179 7.593802876 6.820061443 218564106 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.365811405 7.354421493 7.276969258 6.863577097 6.918482348 7.668663364 7.36817174 7.151674352 7.377639014 110823471 alkK Organic Remediation Others Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7.618209249 7.81930249 8.043440938 7.255753675 8.078321924 8.183351665 8.104537554 7.971294202 7.861242339 36785470 SMR_antibiotics Antibiotic resistance transporter Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 7.432808557 7.379619185 7.472925383 7.134937759 7.159093541 7.744349633 7.164608062 7.076007211 7.369289289 89087925 xylA Carbon cycling Carbon degradation Hemicellulose Bacillus sp. NRRL B-14911 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.770486985 7.870362338 8.021939197 8.11426051 8.106754352 8.187075231 7.857368472 8.228206345 7.610848024 167667264 obgE Stress Radiation stress Anaerotruncus colihominis DSM 17241 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Anaerotruncus;species:Anaerotruncus colihominis; 8.10306599 8.112115498 7.853980112 7.912981146 7.855194789 7.415375262 7.796824705 7.869819107 7.949593877 7.742433849 7.60749909 90954611 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.333920042 7.618399694 7.660241123 8.442834926 8.002293878 8.321080558 7.812393392 8.127490499 126347996 vanA Carbon cycling Carbon degradation Others Streptomyces ambofaciens ATCC 23877 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ambofaciens; 7.35444861 7.731880086 7.810867384 7.826332247 7.39174742 7.606088859 7.031266838 221157950 nicdehydr Organic Remediation Aromatics Heterocyclic aromatics Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 7.240260255 7.378158169 7.43672383 6.990817064 7.384230654 7.656892429 7.42788941 7.330680599 7.572371684 227077234 clpC Stress Protein stress Corynebacterium accolens ATCC 49725 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium accolens; 8.168676372 8.26463603 7.935775807 7.584161003 8.344990627 56476519 pimF Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. EbN1 7.879929135 8.034921181 7.220092757 7.385578563 7.826306434 7.69632593 7.516734499 8.025338155 7.831807161 7.727164288 7.711535268 51534869 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.438592853 8.356584043 8.355213494 7.947791546 8.663296722 8.093904179 8.302047296 8.417417059 8.57074065 126274254 BADH Organic Remediation Aromatics Other aromatics Pichia stipitis CBS 6054 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Scheffersomyces;species:Scheffersomyces stipitis; 8.06854652 8.689907495 7.967841448 7.822600887 7.882062744 7.25825016 7.393342309 7.775656796 7.786821907 7.637615048 7.751726631 15073636 glnA Stress Nitrogen limitation Sinorhizobium meliloti 1021 8.534167726 8.303966907 8.154304547 8.132089128 7.907220878 7.940960082 8.431038146 8.270305591 8.362912478 8.021865495 8.198086089 226092512 sigma_24 Stress Sigma factors Gemmatimonas aurantiaca T-27 superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 7.216396859 7.661398791 7.824216973 7.763699542 7.803385916 7.483986468 7.726408886 157683159 TerD Metal Resistance Tellurium Bacillus pumilus SAFR-032 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pumilus; 8.341118475 8.332511194 7.856770771 7.879659843 7.618199492 7.624738273 7.907179015 7.898322498 7.597808743 7.995975152 116488807 gyrB other category gyrB Pseudoruegeria aquimaris 7.849358527 7.677462769 7.488555653 7.532403814 7.6180327 8.244587742 7.908754215 7.696309479 7.566703301 45593182 gyrB other category gyrB Geobacter humireducens superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.183745821 8.065100183 7.645486564 7.999191028 8.224497015 8.161731205 7.494436641 8.127445612 7.664283862 8.008135868 7.767535188 208605290 hzo Nitrogen Anammox Candidatus Scalindua sp. enrichment culture clone HZO10 8.177709989 7.874285517 7.485425695 7.432411981 7.555646294 7.811528659 7.879449911 229489022 pstC Stress Phosphate limitation Rhodococcus erythropolis SK121 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 7.505093573 7.367778581 7.135623099 7.303589868 7.757741649 7.498240742 7.319745431 7.580018028 90329408 MFS_antibiotic Antibiotic resistance transporter Photobacterium profundum 3TCK superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 8.184574726 8.093963785 7.878316486 8.16859868 8.238347619 8.192908559 8.139678606 7.957310918 118618252 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 7.771716433 7.859038958 7.854871434 7.615155842 8.036352414 8.200254969 7.858114946 7.625893448 7.857085292 222151733 ArsC Metal Resistance Arsenic Macrococcus caseolyticus JCSC5402 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Macrococcus;species:Macrococcus caseolyticus; 7.920424624 7.934476492 40787177 phn Organic Remediation Herbicides related compound Pseudomonas stutzeri superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.396635571 8.617069565 8.382139657 8.127672569 7.897287406 8.110917518 8.689062731 8.175545906 8.557676424 8.572357444 8.642009006 118174756 Catechol Organic Remediation Aromatics Other aromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 7.65759561 7.680651818 8.040805603 7.55417858 7.85541417 7.966649351 7.706982819 7.958910568 7.688524184 212223303 gdh Nitrogen Ammonification Thermococcus onnurineus NA1 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus onnurineus; 8.102769504 8.328305051 7.484418656 7.739885579 7.440375941 7.454595511 7.864616815 8.163238586 8.077653745 7.779836467 7.802621992 90416544 atzA Organic Remediation Herbicides related compound marine gamma proteobacterium HTCC2207 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.826423711 8.237994762 7.142573595 7.210438635 6.824166185 7.481118517 7.090230685 7.033535852 7.500955852 257448772 MFS_antibiotic Antibiotic resistance transporter Enhydrobacter aerosaccus SK60 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Enhydrobacter;species:Enhydrobacter aerosaccus; 8.890252677 8.805257948 8.95362315 8.847240375 8.912375989 8.644690777 8.749852042 156932793 proV Stress Osmotic stress Enterobacter sakazakii ATCC BAA-894 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 8.505884606 8.195155439 7.833235543 7.932249692 8.133647753 8.358475781 7.664689889 8.508839198 7.835323981 7.753985576 7.975486878 269836127 sigma_24 Stress Sigma factors Sphaerobacter thermophilus DSM 20745 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 7.847797047 7.508369064 7.117056423 7.767381251 7.516561997 7.766108324 7.723449087 126134797 nagG Organic Remediation Aromatics Aromatic carboxylic acid Pichia stipitis CBS 6054 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Scheffersomyces;species:Scheffersomyces stipitis; 7.145458499 7.456493471 7.267885833 7.316465415 7.021993353 7.829623576 7.190452728 7.466457612 218750872 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.091952336 7.301214514 7.498527312 6.907515858 6.543459193 7.465613448 145215904 CadA Metal Resistance Cadmium Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.388705857 8.367723047 8.376879943 8.016696373 8.048485103 8.078557364 8.195613919 8.277353824 7.866197097 90421721 Arylest Organic Remediation Aromatics Other aromatics Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.09288326 8.425989192 7.357441567 7.435009663 7.512940385 7.56225539 7.081777277 7.419454173 7.552196041 7.849009213 270347642 sigma_24 Stress Sigma factors Burkholderia sp. CCGE1002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.076126277 8.098641579 8.18438002 8.177542587 8.120404475 7.728860092 8.176261658 8.026726345 8.088453189 8.114536969 7.813423719 258526034 fnr Stress Oxygen stress Desulfurivibrio alkaliphilus AHT2 7.882118648 7.790145949 7.494816664 7.577115977 7.786678621 7.736275998 8.027259495 7.541620822 7.690431625 196113910 ArsC Metal Resistance Arsenic Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 7.157593427 7.181887957 7.602974805 7.029678512 7.184936129 7.521571038 7.452119809 7.578327957 119717968 CopA Metal Resistance Copper Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.308167938 8.192221065 7.802271132 7.88127379 7.979501612 8.320808133 7.768929572 7.796855848 7.646916346 14575565 4HBH Organic Remediation Aromatics BTEX and related aromatics Streptomyces coelicolor A3(2) 7.895549976 7.878762496 7.19306016 7.399952372 6.891297514 7.034864945 209401812 narG Nitrogen Denitrification uncultured bacterium 7.910267283 7.87816909 7.509755079 7.914384579 7.742782421 7.979156764 7.916344221 7.58211671 7.923542159 282571781 ABC_antibiotic_transporter Antibiotic resistance transporter Subdoligranulum variabile DSM 15176 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Subdoligranulum;species:Subdoligranulum variabile; 8.149634998 8.240510926 7.464510319 7.070551534 7.482575057 7.826227718 7.279070511 7.430923126 7.317583856 7.720016112 21220950 NirB Nitrogen Assimilatory N reduction Streptomyces coelicolor A3(2) 7.373614574 7.546371638 7.56758214 7.669206222 8.088382408 7.463550308 7.387096092 110635877 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 8.110444494 7.710002821 8.0928132 7.80357702 7.941321861 166860306 tfdA Organic Remediation Aromatics Chlorinated aromatics Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.605154439 7.370683859 6.845327151 7.410417837 7.871563517 7.439500613 7.338008561 7.300867971 70985695 phytase Phosphorus Phosphorus utilization Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 8.888810001 8.386241375 7.098610807 7.56762885 7.674098677 7.732662369 170136916 type_III_secretion virulence secretion Burkholderia ambifaria IOP40-10 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 7.440819532 7.121597028 8.074501279 7.94240521 7.5400476 8.130509656 7.806696033 7.847820985 8.12757161 167762241 catB Organic Remediation Aromatics BTEX and related aromatics Bacteroides stercoris ATCC 43183 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides stercoris; 9.033680916 9.796085597 8.672335446 8.580621176 8.532633942 8.821678246 8.599897657 28971827 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas sp. P2 7.822374342 7.722003385 7.503247847 7.294893433 7.722641873 7.768897195 7.638619237 7.460852948 7.954524655 85086375 ZntA Metal Resistance Zinc Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 7.950571134 8.011601959 7.494407165 7.794872556 7.85831732 7.920571543 7.975243688 7.962260581 7.946183294 8.031901228 7.890551946 46115774 nagG Organic Remediation Aromatics Aromatic carboxylic acid Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 7.430919304 7.473243584 7.369766857 7.244789798 7.490399003 7.856695543 7.511213504 7.129807202 7.530008985 229020493 cap virulence capsule Bacillus cereus AH1273 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 7.10479726 6.84412293 7.047440486 6.873466917 6.560387658 7.367837037 154154459 sigma_24 Stress Sigma factors Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 9.508836691 9.692727195 8.370282981 8.476890206 8.557576475 8.60495385 8.310530417 8.282034974 8.588095158 8.536668584 8.706744366 118763379 phtA Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.188647191 8.380167026 8.087901354 8.174303886 7.80503701 7.770404971 8.101615927 8.122958277 8.100527369 7.981216622 7.681883919 15127807 pcaG Organic Remediation Aromatics Other aromatics Hydrogenophaga intermedia superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hydrogenophaga; 7.959332066 8.199913845 8.188791982 7.771193446 7.584933602 7.49235051 7.701229586 7.931688558 7.669108723 7.604760133 7.441293346 167779449 alkK Organic Remediation Others Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira biflexa; 8.664973829 8.563397627 7.798353224 7.662896229 7.597942413 7.280311932 7.447403045 7.42894415 7.379662392 7.809699026 5616325 lip Carbon cycling Carbon degradation Lignin Ceriporiopsis subvermispora 8.246097208 8.854066007 8.718189084 8.595215391 8.290220309 8.511428611 8.849074394 108466213 sigma_24 Stress Sigma factors Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 8.081217415 8.222375568 8.295732978 7.906034461 7.946403252 7.968966986 7.918735739 8.217475339 7.837216573 7.937828849 150837179 fnr Stress Oxygen stress Marinomonas sp. MWYL1 7.377808086 6.983716708 91716364 ahpC Stress Oxygen stress Shewanella denitrificans OS217 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella denitrificans; 7.892954971 8.146521901 7.60968364 7.401694821 7.725125494 7.774004004 7.972952207 7.856455338 7.758529244 7.609176676 117924502 nifH Nitrogen Nitrogen fixation Magnetococcus sp. MC-1 superkingdom:Bacteria;phylum:Proteobacteria;genus:Magnetococcus; 8.199901431 8.054267987 8.324825099 8.220950748 8.113719897 8.496215246 8.247368707 8.715949397 8.086657812 8.131430707 151424631 catB Organic Remediation Aromatics BTEX and related aromatics Sulfurovum sp. NBC37-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;genus:Sulfurovum; 7.953911479 8.291825295 7.680016193 7.596554002 7.889199732 7.48324457 7.359873261 7.982597376 7.339851808 7.623894706 7.668857176 60476058 rubisco Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 6.952687902 7.194127334 7.122690106 7.187480309 21110665 xylanase Carbon cycling Carbon degradation Hemicellulose Xanthomonas axonopodis pv. citri str. 306 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas axonopodis; 7.636654608 7.773983821 7.999006131 7.516128822 7.563403511 7.983176474 7.671476349 7.809087408 7.728314785 197737627 akbF Organic Remediation Aromatics BTEX and related aromatics Mycobacterium tuberculosis str. Haarlem 7.74381771 7.507057333 7.534405505 7.608711667 7.824484459 7.916499576 7.780440412 7.61994524 7.856209526 254513166 glnA Stress Nitrogen limitation Rhodobacteraceae bacterium KLH11 7.563801006 7.711805045 7.563193419 7.218972792 7.845259122 145408869 CadA Metal Resistance Cadmium Caldicellulosiruptor saccharolyticus DSM 8903 7.552682128 7.444115215 6.838712163 7.084627371 7.285095904 7.027641464 7.359351113 218677074 oxyR Stress Oxygen stress Vibrio splendidus LGP32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 7.346398466 7.369293238 7.375744996 7.622446484 7.887300169 7.9127614 7.567412105 7.821238705 227877212 glnR Stress Nitrogen limitation Lactobacillus crispatus JV-V01 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus crispatus; 7.078766442 6.868207839 7.022152607 71383870 nasA Nitrogen Assimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.674440967 7.565759037 7.330923162 7.302420964 7.762443204 7.60450523 6.981861324 7.245814884 14625485 PceA Organic Remediation Others Desulfitobacterium frappieri 7.598573118 7.329830017 7.408298221 7.001662017 7.371388035 7.378548063 262199106 cap virulence capsule Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Haliangiaceae;genus:Haliangium;species:Haliangium ochraceum; 7.76370066 7.787048988 7.92297847 7.212468314 7.76808078 7.317958135 7.703261402 7.720887448 71550863 atzC Organic Remediation Herbicides related compound Nitrosomonas eutropha C71 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas eutropha; 7.538955858 7.155141952 7.483133894 7.125612274 6.858218303 7.624501588 7.559375492 7.192753369 7.428251867 116624615 sigma_24 Stress Sigma factors Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 6.919905681 7.14993262 7.102602483 7.291061484 7.482172888 253577548 sigma_24 Stress Sigma factors Paenibacillus sp. oral taxon 786 str. D14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 7.600246632 7.474053519 7.419148454 6.796969835 7.346951144 7.722582765 7.610169688 7.095875499 7.643593328 207087035 ppx Phosphorus Phosphorus utilization beta proteobacterium KB13 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 7.684319219 7.694279243 8.001599499 8.365153132 7.836922954 8.189053755 7.660081551 8.045089375 7.834513733 71846828 nosZ Nitrogen Denitrification Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 7.531514133 7.45160377 7.709578779 7.217843063 7.495414388 7.764102639 7.661815033 7.706350163 7.475390494 172039878 AceB Carbon cycling Carbon degradation others Corynebacterium urealyticum DSM 7109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium urealyticum; 7.299485318 7.057842988 7.2713184 7.278231652 7.44762405 7.835851154 7.503258254 7.06255482 7.509000872 211905521 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.164803127 7.419160195 7.69827773 6.821830262 7.27445486 7.367792806 7.649008461 149950662 hrcA Stress Heat shock Alkaliphilus metalliredigens QYMF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus metalliredigens; 7.108705452 7.093692751 10175486 hly virulence hemolysin Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 7.402073746 7.00723673 170605744 nirS Nitrogen Denitrification uncultured bacterium 7.872969553 7.625684546 7.648129222 7.583775501 7.559942285 7.976788832 7.582941233 7.348302949 7.684149512 148254987 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.570539562 7.47145915 7.550642367 7.868733755 7.538885113 8.457595521 7.226740832 7.611773602 7.563157955 11497958 merP Metal Resistance Mercury Archaeoglobus fulgidus DSM 4304 superkingdom:Archaea;phylum:Euryarchaeota;class:Archaeoglobi;order:Archaeoglobales;family:Archaeoglobaceae;genus:Archaeoglobus;species:Archaeoglobus fulgidus; 7.07003191 6.963241586 6.532702262 7.341696992 116694707 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 7.483522693 7.714537562 7.858510206 8.055785452 8.232573068 8.150771966 7.745360798 7.785171666 169759198 nbzC Organic Remediation Aromatics Nitoaromatics Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.485798443 7.545125557 7.73127982 7.482924522 7.346935517 7.968494517 7.563261476 7.546766796 8.067743312 119463871 fnr Stress Oxygen stress Nodularia spumigena CCY9414 7.235980217 6.939933958 6.807572141 7.004051999 110808292 dsrB Sulphur sulfite reductase uncultured Desulfotomaculum sp. superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 7.844176344 7.956387341 8.116418063 7.739573374 8.222601173 7.94779733 8.241417315 8.234254675 7.908789593 156525399 CadA Metal Resistance Cadmium Vibrio harveyi ATCC BAA-1116 7.256384758 7.339596892 7.366313031 7.70685569 119457757 todF Organic Remediation Others Lyngbya sp. PCC 8106 7.339761218 7.271840401 7.100047346 7.09540459 7.449085419 7.758598912 7.383910755 7.42004372 7.51501416 110596426 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 7.811528379 7.554533044 7.058237561 7.741852632 7.883526462 7.318258498 7.442944321 7.540842786 268163015 MFS_antibiotic Antibiotic resistance transporter Photobacterium damselae subsp. damselae CIP 102761 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium damselae; 7.16731977 7.154483656 7.528957171 7.268520628 6.752918973 7.57204574 7.01084122 7.004104358 194335590 sigma_24 Stress Sigma factors Pelodictyon phaeoclathratiforme BU-1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 7.646681109 7.664612617 7.741110507 6.735569146 7.132771554 7.740213964 7.332009582 7.458036372 7.066817004 120435697 CopA Metal Resistance Copper Gramella forsetii KT0803 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Gramella;species:Gramella forsetii; 7.740095609 7.844552564 7.653622033 7.21836583 7.509286387 118732140 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.01724201 8.064012447 7.858222262 8.07502733 8.307429508 8.071240642 8.303541372 8.156189982 8.145078699 86553463 pilin virulence pilin Synechococcus sp. JA-3-3Ab superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.490089667 7.408972921 7.436583804 7.271304056 7.035858463 89 CODH Carbon cycling Carbon fixation 7.454846683 7.511246665 7.301299228 7.264268332 7.278680803 7.748573381 7.570761252 7.493969844 7.442911594 213876518 pilin virulence pilin Vibrio vulnificus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.102195712 6.960736165 7.096317425 7.547105744 229916143 glnR Stress Nitrogen limitation Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 8.109632545 7.996120856 8.068135763 7.766865606 8.315358835 7.854573665 8.366595272 8.467692529 7.925545837 84386827 atzA Organic Remediation Herbicides related compound Vibrio splendidus 12B01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 7.384830564 7.284261978 7.121125641 6.863359976 7.35928574 6.964359036 6.723155684 7.266383995 262373202 MFS_antibiotic Antibiotic resistance transporter Acinetobacter junii SH205 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter junii; 6.561232281 7.373661319 116255366 linC Organic Remediation Pesticides related compound Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.477956438 7.6066556 7.568086709 7.527024382 7.349366342 7.624323001 7.431576048 7.583539071 146393492 ahpC Stress Oxygen stress Pichia guilliermondii ATCC 6260 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Meyerozyma;species:Meyerozyma guilliermondii; 6.902379068 7.190356996 6.976222618 6.894835741 89054698 fnr Stress Oxygen stress Jannaschia sp. CCS1 7.222466268 7.598587171 7.753892075 7.005592235 7.332314843 7.937109506 7.040907193 7.602929655 7.265339425 77378507 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.225485328 7.647960274 7.386962124 7.110139463 7.396385961 7.596520508 7.264939069 7.033025527 7.314081313 167574595 aoxB Metal Resistance Arsenic Burkholderia oklahomensis C6786 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia oklahomensis; 8.35685691 8.790551989 8.646022999 8.013527251 8.769249563 8.176041833 8.184813212 8.480438138 156743774 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 7.932652646 8.110979972 7.522219009 7.577030737 7.773483352 7.632321602 7.452385763 7.681154388 94967714 nbaC Organic Remediation Aromatics Nitoaromatics Acidobacteria bacterium Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 7.148307429 6.645065441 114197088 pheA Organic Remediation Aromatics Other aromatics Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.69305852 7.424340309 7.460947103 7.470964312 7.629766976 7.765696393 7.495547333 9971329 gyrB other category gyrB Cellulophaga lytica superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Cellulophaga; 7.351786379 7.494853977 7.414429 7.35236042 7.426055645 7.616729179 7.328600995 7.41952637 218167207 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Cyanothece sp. PCC 8801 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.521729115 7.593754405 7.382019903 6.600915014 7.781570959 7.227684342 7.168188951 7.442349398 283847094 sigma_24 Stress Sigma factors Bacillus cellulosilyticus DSM 2522 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cellulosilyticus; 7.532596192 7.67686643 7.219080798 7.853820486 91792540 dnaK Stress Heat shock Shewanella denitrificans OS217 7.19800091 7.278316757 7.518387081 7.743648639 15603106 sigma_70 Stress Sigma factors Pasteurella multocida subsp. multocida str. Pm70 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Pasteurella;species:Pasteurella multocida; 7.144362384 7.508475305 161331573 silP Metal Resistance Silver Shewanella benthica KT99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella benthica; 6.747427633 7.453072558 62869559 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Metarhizium anisopliae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Clavicipitaceae;genus:Metarhizium; 7.148601399 7.151661037 7.094776603 6.489098709 7.379672086 6.97499802 6.896603752 7.329712414 221563392 fnr Stress Oxygen stress Geobacter sp. FRC-32 6.789794435 7.404612614 260862033 nrfA Nitrogen Dissimilatory N reduction Selenomonas sputigena ATCC 35185 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sputigena; 7.553873165 7.390256758 7.345094111 7.210764582 7.663508351 7.758958025 7.685067438 7.577935785 7.826755945 94425371 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 7.523525385 7.441124093 7.877262926 7.569121498 7.547909282 7.76024212 7.665111037 7.46879837 7.599120751 86139133 hly virulence hemolysin Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.079331816 7.62719801 146275471 nagG Organic Remediation Aromatics Aromatic carboxylic acid Novosphingobium aromaticivorans DSM 12444 8.061469438 7.974399435 7.813505244 7.747926455 8.259400991 8.144353826 8.036388786 8.098904201 8.027727242 156936659 pulA Carbon cycling Carbon degradation Starch Enterobacter sakazakii ATCC BAA-894 7.656464062 7.751026502 7.417392118 7.843854967 260642396 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Bacteroides finegoldii DSM 17565 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides finegoldii; 7.115338721 7.508611551 7.384652342 6.931598132 7.020552496 6.775821806 7.570752538 193212148 ppx Phosphorus Phosphorus utilization Chlorobaculum parvum NCIB 8327 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum parvum; 7.014820762 7.15769919 7.310071968 6.844002138 7.173013809 7.248175393 157323898 hly virulence hemolysin Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 7.784851427 7.841337474 7.608254421 7.727918049 8.254089326 8.149543618 7.764508479 7.955154444 7.973252021 91802026 sox Sulphur Sulphur oxidation Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 7.500252077 6.927741223 7.432370017 239837922 clpC Stress Protein stress Micrococcus luteus NCTC 2665 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus;species:Micrococcus luteus; 7.80439753 7.88256046 7.701363946 7.6931523 7.906748308 7.835248597 7.801414141 8.12712449 110548002 hydrogenase Energy process Energy process Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 7.32519738 7.194229851 7.206933716 6.67026492 6.888372426 7.551808936 6.890618109 7.035182817 156740279 sigma_70 Stress Sigma factors Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 8.831365966 8.828660403 8.888867261 8.981027696 8.764606564 9.114502419 165975506 arcA Stress Oxygen limitation Actinobacillus pleuropneumoniae serovar 3 str. JL03 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus pleuropneumoniae; 7.171533164 7.095251675 6.850915577 7.503484471 7.0679967 6.970546257 7.400926927 198264907 glnA Stress Nitrogen limitation Octadecabacter antarcticus 238 6.972543064 7.141611455 7.326278326 7.244518999 7.026918422 7.678951165 7.290297575 7.222666409 194010645 pstB Stress Phosphate limitation Bacillus pumilus ATCC 7061 7.412522962 7.489937821 7.759518565 7.193492427 7.386344861 171851849 TerC Metal Resistance Tellurium Corynebacterium urealyticum DSM 7109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium urealyticum; 8.067519693 7.909255076 7.913028272 7.96930756 8.062986338 8.16956364 8.039866775 8.207269357 8.014723123 88804901 amyA Carbon cycling Carbon degradation Starch Robiginitalea biformata HTCC2501 7.97303702 8.237030588 8.091419552 7.356346056 7.669654497 7.779326295 7.754448507 7.944480357 167354718 cytochrome Energy process Energy process Shewanella halifaxensis HAW-EB4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella halifaxensis; 7.432747414 7.095185366 116669149 AceA Carbon cycling Carbon degradation others Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8.168665497 8.570672449 8.3080319 7.942963445 8.511978663 8.502814403 8.479051274 8.247764634 8.323535984 55978112 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.236882859 7.23398035 7.179088403 7.222713191 7.517686529 7.39174703 7.442281547 158303645 pstC Stress Phosphate limitation Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;genus:Acaryochloris;species:Acaryochloris marina; 7.167217992 6.823162942 7.276936739 7.146135674 7.40844415 7.336435195 7.288319954 7.351277221 98978621 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sphingopyxis alaskensis RB2256 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 8.371445521 8.310355648 8.285002464 7.877031303 8.587564172 8.150806219 8.666486173 8.393386125 8.462278904 115260179 CopA Metal Resistance Copper Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.77789355 7.792718406 7.297900629 7.025135564 7.636283002 7.8381805 7.47520296 7.548474298 7.501208658 257203977 cda Carbon cycling Carbon degradation Starch Roseburia intestinalis L1-82 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia intestinalis; 9.079468462 8.996089168 9.002404095 77383094 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.095469469 7.334090627 7.372892594 7.410897015 7.347476241 7.692193004 7.44462594 7.349905939 7.777662483 255273249 sox Sulphur Sulphur oxidation Hyphomicrobium denitrificans ATCC 51888 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 7.22851596 7.076688466 177910051 srt virulence surface protein Clostridium perfringens D str. JGS1721 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium perfringens; 7.774243015 7.690453207 7.753939227 7.576277727 7.596038162 7.653018101 218221000 ppx Phosphorus Phosphorus utilization Mitsuokella multacida DSM 20544 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Mitsuokella;species:Mitsuokella multacida; 7.394254668 7.485130141 7.846879813 7.655164559 6.61557758 8.07344242 7.248491371 7.338023033 7.333186261 89901337 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 7.499002089 8.009037353 7.578051094 7.700214656 7.781881888 7.887910452 7.802196859 7.577566074 269137313 endochitinase Carbon cycling Carbon degradation Chitin Beauveria bassiana superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Cordycipitaceae;genus:Cordyceps;species:Cordyceps bassiana; 7.190305319 7.380212532 7.402910543 7.586971972 6.970838272 7.986641801 7.405254725 7.358077106 238934052 groEL Stress Heat shock Lachancea thermotolerans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Lachancea; 7.521063314 7.617531818 7.751052248 7.695365046 7.852849415 7.937382831 8.291678269 8.355369768 7.868632375 224024800 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Bacteroides coprophilus DSM 18228 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides coprophilus; 7.161664591 6.878532472 242281118 sigma_32 Stress Sigma factors Desulfovibrio salexigens DSM 2638 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio salexigens; 7.635671421 7.449518462 7.508191377 7.247114449 7.535949291 7.857768049 7.710880901 7.709594105 7.726042618 194016386 TerD Metal Resistance Tellurium Bacillus pumilus ATCC 7061 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pumilus; 7.067035724 7.500586135 7.197629243 7.353805653 7.192389951 7.697431366 7.31548856 7.576852501 227328874 fnr Stress Oxygen stress Pectobacterium carotovorum subsp. carotovorum WPP14 6.522585802 7.310732722 6.726499295 7.290862401 109290261 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.765227118 7.873929027 7.527729392 7.180193563 7.23770943 7.277693177 7.449069366 73749279 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. CBDB1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 8.64065884 8.213906565 8.262975223 8.241611507 8.282735128 8.23023937 8.541884379 254444043 sigma_70 Stress Sigma factors Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 6.948767564 7.12139946 7.432861792 7.16070089 7.799153886 7.358220923 7.089735624 7.586797146 167541478 mcrA Carbon cycling Methane Methane production uncultured bacterium superkingdom:Bacteria; 7.781176527 7.61353369 7.338951291 7.314356848 7.704908272 7.911748244 7.847320006 7.846520676 7.406293708 117583156 atzD Organic Remediation Herbicides related compound Arthrobacter sp. AD25 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.201763427 7.054460089 7.506127986 6.954055277 6.937951239 7.491445745 7.218776263 7.059691482 7.177951912 111918679 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.192366236 7.410172768 7.21401081 7.390858115 7.288616493 163761917 ahpF Stress Oxygen stress Bacillus selenitireducens MLS10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus selenitireducens; 7.365143041 7.298505375 7.004136386 7.253638799 7.100740217 154249310 hly virulence hemolysin Fervidobacterium nodosum Rt17-B1 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Fervidobacterium;species:Fervidobacterium nodosum; 6.769955087 7.07459465 89474088 nifH Nitrogen Nitrogen fixation uncultured cyanobacterium superkingdom:Bacteria;phylum:Cyanobacteria; 6.965507453 7.625158092 118171253 mhpA Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 7.878533458 7.937592019 7.662051929 7.589007398 7.919777345 8.245628982 7.82973374 7.661732916 7.965065673 84778367 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.889665763 7.756687407 7.490734052 7.192903833 7.749541643 7.645830548 7.734461431 7.471727282 7.522026746 40742492 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.305175343 7.360583193 7.294354145 219965742 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.290697636 7.320638037 7.561432064 7.122644612 7.304002526 7.576086601 7.615291542 7.40588507 7.437598248 254491712 ahpC Stress Oxygen stress Methylophaga thiooxidans DMS010 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Methylophaga;species:Methylophaga thiooxidans; 7.239502884 7.140105525 7.150250467 6.870265563 6.756163292 7.667563934 6.801044943 6.955787919 7.275201672 168335218 amyA Carbon cycling Carbon degradation Starch Epulopiscium sp. 'N.t. morphotype B' superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Epulopiscium; 7.329031879 6.976626397 7.138593679 45126709 gyrB other category gyrB Halomonas sp. TNB I24 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 7.488437717 7.246572814 7.259252541 6.726170726 6.994071019 7.267266852 6.984389408 7.521433184 150015614 TehB Metal Resistance Tellurium Clostridium beijerinckii NCIMB 8052 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium beijerinckii; 6.965914459 7.128035812 7.192860197 6.913752884 6.998358635 7.283700049 116812205 nifH Nitrogen Nitrogen fixation Clostridium sp. MK31 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 8.664518895 8.463616621 8.640053642 8.436601626 8.214516754 8.162523531 8.702782278 260462447 fnr Stress Oxygen stress Mesorhizobium opportunistum WSM2075 7.317136097 7.351418127 7.480222657 7.227453004 7.470086561 7.726177969 7.706795276 7.624688163 7.460036916 110818905 benAB Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. RHA1 7.531944753 7.51846508 7.930976992 8.305461789 7.653377863 7.675221999 8.063164464 7.788817633 94969919 Catechol Organic Remediation Aromatics Other aromatics Acidobacteria bacterium Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 7.593320874 7.660688547 7.3728219 7.471956215 7.509958055 7.821643021 7.731083312 7.621712171 7.573576129 71845711 SMR_antibiotics Antibiotic resistance transporter Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 7.938426318 7.892371713 7.98018409 8.028236911 8.231738364 8.087089373 8.189296646 8.065631775 7.545233234 114848900 dnaK Stress Heat shock Coxiella endosymbiont of Amblyomma americanum 7.631233946 7.64456392 7.051502779 89333434 dmsA Organic Remediation Others Desulfitobacterium hafniense Y51 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 7.919962775 7.501984257 7.467676575 7.48949606 124111021 tutFDG Organic Remediation Aromatics BTEX and related aromatics uncultured bacterium superkingdom:Bacteria; 7.403461795 7.403884926 7.291981063 7.096803426 7.59157218 7.252263644 7.188502125 7.328658163 168334737 ChrA Metal Resistance Chromium Epulopiscium sp. 'N.t. morphotype B' superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Epulopiscium; 7.499704531 7.322526538 157404625 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.378899989 7.642463326 7.61152152 7.639856536 7.257199665 7.673681023 7.850532206 7.572370142 7.630469041 91775209 sigma_24 Stress Sigma factors Methylobacillus flagellatus KT superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 7.968903466 7.849482619 7.425905333 6.834531985 7.313301681 7.563000687 7.134912022 7.287315632 7.14060108 118731186 gyrB other category gyrB Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.742955197 7.766408076 7.810156699 7.825946545 7.936522363 8.020524176 8.160745703 7.9592683 7.774397563 21647784 rubisco Carbon cycling Carbon fixation Chlorobium tepidum TLS superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 7.091349446 7.191924083 7.507964773 6.759397199 7.660473127 7.273447059 7.178808712 227069683 NiR Nitrogen Assimilatory N reduction uncultured archaeon 7.76062834 7.815998076 7.695970661 6.903869 7.731547915 7.830359025 7.692897771 7.850057609 114308776 sigma_24 Stress Sigma factors Nitrosomonas eutropha C91 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas eutropha; 8.025297301 7.890336766 7.925283494 7.713523661 7.560175345 8.233909112 8.247287737 58039173 pstB Stress Phosphate limitation Gluconobacter oxydans 621H 7.27282428 7.37725297 7.296371657 7.012069844 7.674318662 7.110406214 7.190315516 7.2820037 88856551 nreB Metal Resistance Nickel marine actinobacterium PHSC20C1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 7.177427853 7.194908809 6.943155862 158509293 narI Stress Oxygen limitation Desulfococcus oleovorans Hxd3 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus;species:Desulfococcus oleovorans; 7.052854984 7.241394409 7.019700733 7.302184948 222138069 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.355029991 7.158215925 7.392253949 6.784718032 7.103604383 7.540292828 7.201864307 7.04327032 7.34479756 149750094 dmsA Organic Remediation Others Vibrio parahaemolyticus AQ3810 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.280963683 7.009934968 6.590969843 7.32949166 94425287 xylanase Carbon cycling Carbon degradation Hemicellulose Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 7.618424574 7.207525565 7.738862789 7.84935684 7.053385712 7.811078894 7.303326817 7.169671393 6.858871536 22778527 alkH Organic Remediation Other Hydrocarbons Oceanobacillus iheyensis HTE831 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Oceanobacillus;species:Oceanobacillus iheyensis; 6.848945815 6.854399644 6.950487364 6.524164159 7.429700962 70731410 B_lactamase_C Antibiotic resistance Beta-lactamases Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.3412495 8.411461762 8.574753094 8.595057283 8.222987801 8.598660733 8.290921112 8.316446719 8.683016517 146313769 pstA Stress Phosphate limitation Enterobacter sp. 638 8.485829786 7.981315796 8.26431944 7.76501647 8.084534162 8.070580014 8.275893275 8.429246516 56178896 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Idiomarina loihiensis L2TR 7.316507574 7.280067465 88809912 sigma_70 Stress Sigma factors Synechococcus sp. WH 7805 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.099190277 7.851901837 7.3545321 7.588724058 7.612495408 8.094959323 7.418096184 7.373235392 7.250498231 145228503 ChrA Metal Resistance Chromium Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8.391684244 8.419895474 8.08611182 7.868115241 8.400930761 8.230154589 8.331279835 7.671484981 7.825560825 146192475 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.345785752 7.375176759 7.867312394 7.468499926 8.093201678 16125952 ppx Phosphorus Phosphorus utilization Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 7.857756404 8.013916199 7.744510379 7.949211312 7.683824496 7.828367615 126464359 ChrA Metal Resistance Chromium Rhodobacter sphaeroides ATCC 17029 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 8.130816561 7.77715622 7.581117689 8.182236647 7.887232283 8.698203243 7.749161301 7.733162682 7.742208382 309855 nahA Organic Remediation Aromatics Polycyclic aromatics Pseudomonas putida 6.918652587 7.195695506 7.199334428 6.86820076 6.554018488 7.53817119 23978211 gyrB other category gyrB Anabaena variabilis superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena; 6.964800753 7.256143919 61374342 helicase_family_4 Bacteria phage REPLICATION Prochlorococcus phage P-SSP7 7.262203978 7.380270037 220906948 nagG Organic Remediation Aromatics Aromatic carboxylic acid Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.118852149 7.149458804 7.303316251 145589121 Arylest Organic Remediation Aromatics Other aromatics Polynucleobacter sp. QLW-P1DMWA-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 8.014997808 8.077763198 8.023317595 7.814597409 8.133280876 7.916247141 8.09234919 7.877958333 7.808086718 219859605 hrcA Stress Heat shock Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 8.100707727 8.338754681 8.049597788 8.0076732 8.250792264 8.328261262 8.287792335 7.916106398 7.881431231 160885766 ppx Phosphorus Phosphorus utilization Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 7.270032539 7.317200593 7.117085719 7.630212173 7.082197225 7.330125589 1663519 endoglucanase Carbon cycling Carbon degradation Cellulose Clostridium thermocellum superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 7.994850073 8.27055777 8.223707616 7.559244394 8.091740395 7.99177944 8.586372801 160890884 ara Carbon cycling Carbon degradation Hemicellulose Bacteroides uniformis ATCC 8492 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides uniformis; 8.344127279 7.993324723 7.761922754 8.022991166 7.854905831 8.172938784 7.949767769 159027638 sigma_24 Stress Sigma factors Microcystis aeruginosa PCC 7806 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 7.219718705 7.429669144 7.647380937 7.609083469 7.130778908 7.741525291 7.513806234 7.821118512 3157590 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 7.240266789 7.271921076 7.488829387 7.124455265 268592278 glnA Stress Nitrogen limitation Providencia rettgeri DSM 1131 7.142787695 6.54018302 7.013819093 6.925538125 6.884844819 7.27122597 109455755 phn Organic Remediation Herbicides related compound Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 7.219125035 7.187674441 6.906539819 6.853467944 7.682955604 7.097884898 7.052854351 82702532 amyA Carbon cycling Carbon degradation Starch Nitrosospira multiformis ATCC 25196 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira;species:Nitrosospira multiformis; 7.569227243 7.46769068 7.405915957 7.130408773 7.339926898 7.76579925 7.45476395 7.411958426 7.498745477 780709 nifH Nitrogen Nitrogen fixation unidentified marine eubacterium superkingdom:Bacteria; 8.010822817 7.988966895 7.870752567 7.658916875 8.118254489 7.907652752 8.175488672 8.391619035 8.06432527 240102392 pstB Stress Phosphate limitation Thermococcus gammatolerans EJ3 7.091975782 7.267112088 91774326 mcrA Carbon cycling Methane Methane production Methanococcoides burtonii DSM 6242 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanococcoides;species:Methanococcoides burtonii; 8.047130016 8.160031787 8.041894861 7.832719772 8.080631687 8.214035317 8.095020512 7.846842649 7.684492187 83025966 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 7.554031899 6.870595268 7.040312606 7.611085479 7.420010473 145701954 NADH_ubiquinone_oxidoreductase Bioleaching Electron transport Metallosphaera sedula DSM 5348 7.239625794 7.364172493 7.380099456 7.35743557 7.797988769 77378697 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.687647703 7.672773388 7.684105009 7.582428754 7.792234389 7.560362372 7.324098639 7.503072113 219675736 gyrB other category gyrB gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.022792919 7.210137552 7.185878473 7.134039905 7.762347355 7.017183503 6.952638674 7.13423818 229360429 iro virulence Pseudomonas fluorescens SBW25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.510185345 7.514377715 7.392625842 7.179127058 7.410276301 7.408379511 7.474237282 7.358704264 46137627 nagG Organic Remediation Aromatics Aromatic carboxylic acid Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 6.98345722 7.247313021 7.463018184 7.089488486 7.531440429 6.928821618 6.954418977 157889247 tfdB Organic Remediation Aromatics Chlorinated aromatics Bradyrhizobium sp. M75-VN10-2W superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.65359374 7.556824283 7.412188051 7.1620744 7.492395146 7.760726185 7.602549272 7.438366535 72121761 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.455342627 7.310072958 7.579038322 7.77636147 7.285049502 8.179016007 7.508884537 7.483730122 7.15598751 218355942 ABC_antibiotic_transporter Antibiotic resistance transporter Escherichia fergusonii ATCC 35469 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia fergusonii; 7.394440736 7.411846744 7.060924761 7.460152648 7.464923082 6.892364302 7.342265234 118024046 nrfA Nitrogen Dissimilatory N reduction Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 7.37298972 7.440833806 39575237 ppx Phosphorus Phosphorus utilization Bdellovibrio bacteriovorus HD100 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 7.559100063 7.819773562 7.697718982 7.170838395 7.820204336 7.828913592 7.751323144 7.999558835 227989465 ahpC Stress Oxygen stress Meiothermus silvanus DSM 9946 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 7.643078446 7.772289931 7.628424999 7.644029961 7.688597736 7.502292278 7.398535757 7.845336254 78363573 CopA Metal Resistance Copper Thiomicrospira crunogena XCL-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Thiomicrospira;species:Thiomicrospira crunogena; 8.001229407 7.653937382 7.364557875 7.336132458 7.194500607 7.34362088 156743393 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 7.731107622 7.667362755 7.670968826 7.280772254 7.576844805 7.838898452 7.868799169 7.553118481 7.845304851 260536223 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Prevotella veroralis F0319 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella veroralis; 7.29998732 7.630081289 7.54356035 7.889288998 7.015458639 8.037687623 7.391592807 7.252191653 7.380940386 91223800 pilin virulence pilin Vibrio alginolyticus 12G01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 8.092930646 8.206336118 8.238168059 8.18140818 8.108547128 8.179280106 8.42949911 8.309415294 8.138754294 226726373 sox Sulphur Sulphur oxidation uncultured bacterium superkingdom:Bacteria; 7.606683744 7.790187474 7.577593763 7.454974402 7.772294151 7.738241724 7.633654267 7.743703085 7.571977705 239598341 proV Stress Osmotic stress Staphylococcus warneri L37603 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus warneri; 7.13268616 7.338942763 6.929502294 8.153022447 77994973 atzA Organic Remediation Herbicides related compound Carboxydothermus hydrogenoformans Z-2901 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Carboxydothermus;species:Carboxydothermus hydrogenoformans; 7.560518145 7.323243422 7.581455293 23392971 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.34936609 7.291721839 7.876828142 6.910717432 7.003858727 7.664748727 7.327724077 7.106605447 52785255 tnrA Stress Nitrogen limitation Bacillus licheniformis ATCC 14580 7.269627658 7.487598195 7.226057331 7.237616607 7.430061724 73749159 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. CBDB1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.248823878 6.878967169 7.046025258 7.232243449 7.672143839 169867040 groEL Stress Heat shock Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 7.310844964 7.17875395 119394773 B_lactamase_A Antibiotic resistance Beta-lactamases Citrobacter gillenii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter; 7.606209976 7.691035022 7.560673604 7.323464992 7.840275316 7.720290307 7.437475383 7.358712186 7.664766227 124514272 ABC_transporter_II Bioleaching other category Leptospirillum sp. Group II UBA 6.976819663 7.356458618 261835120 pilin virulence pilin Halothiobacillus neapolitanus c2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Halothiobacillaceae;genus:Halothiobacillus;species:Halothiobacillus neapolitanus; 7.781410575 7.88833747 7.991047878 7.827063593 7.284985864 8.59431737 7.775224623 7.815490993 7.711623192 99083251 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 6.833073836 7.083401356 7.101063268 7.058548283 6.985400433 7.466184719 7.194038398 6.961176466 7.204291646 49036588 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.200786215 7.110609837 7.098246135 6.968874154 6.845319844 7.533807884 7.096016302 6.941267697 7.085417677 254420452 fnr Stress Oxygen stress Brevundimonas sp. BAL3 7.753587214 7.878203737 7.691683529 7.38258178 7.626481155 7.707341686 7.640950447 7.817750553 251756514 pilin virulence pilin Pectobacterium carotovorum subsp. carotovorum PC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 7.57716486 7.58920688 7.201518616 7.268696887 7.346930352 7.685542886 7.447123219 7.552966746 7.155920846 86356567 alkK Organic Remediation Others Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.127533291 7.456628842 7.291375267 6.843666732 7.299745282 7.134625294 145222254 pstC Stress Phosphate limitation Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 7.497603927 7.459866719 7.411576218 7.12625473 7.116314563 7.606860305 50982464 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7.79274477 7.819307197 7.971491072 7.698314602 8.271053521 8.105709978 7.912067726 7.865884123 7.666383816 171193618 hrcA Stress Heat shock Polynucleobacter necessarius subsp. necessarius STIR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 7.144881325 7.245635289 7.061703993 6.914633534 50084257 Arylest Organic Remediation Aromatics Other aromatics Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 6.967777749 7.094382726 6.650835107 7.376665057 6.961677356 7.27986981 73762776 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.805592413 7.892179569 7.65119039 7.842980494 8.233966289 8.149727414 7.955649535 7.558896444 8.255291074 91698101 pimF Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 7.5789464 7.418791993 7.329785378 7.44251964 7.2170326 7.793943391 7.497818133 7.0238444 13873324 rubisco Carbon cycling Carbon fixation Allochromatium vinosum superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium; 7.753486926 7.679939629 7.852174218 7.904952646 7.527788669 8.312672701 7.417860166 7.481679563 7.511847013 255060134 sigma_32 Stress Sigma factors Geobacter sp. M18 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 7.860806279 7.881202097 7.830954514 7.679400596 7.851628916 8.027442265 7.966658644 7.778176999 88062468 dsrA Sulphur sulfite reductase uncultured Desulfohalobiaceae bacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae; 7.50842389 7.135276949 7.263253059 6.781854274 7.47558393 7.030637282 7.608935843 152969044 Arylest Organic Remediation Aromatics Other aromatics Klebsiella pneumoniae subsp. pneumoniae MGH 78578 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 7.512197265 7.644955416 7.817035921 7.248785346 7.558853177 7.8638608 7.389549053 7.271332096 7.261941118 20278839 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.507419232 7.364616424 6.950496658 7.593097966 7.235252298 7.083137758 7.55538956 110279177 obgE Stress Radiation stress Cytophaga hutchinsonii ATCC 33406 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Cytophaga;species:Cytophaga hutchinsonii; 7.527522865 7.287625298 7.352486001 227832443 proW Stress Osmotic stress Corynebacterium aurimucosum ATCC 700975 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium aurimucosum; 7.03613291 7.500899779 7.548687534 7.417306861 7.628924726 68008541 rubisco Carbon cycling Carbon fixation Exiguobacterium sibiricum 255-15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 7.498163606 7.254793302 7.335845891 7.106363164 7.272111633 7.498639899 7.619703462 7.455118518 7.315253647 238872912 phoB Stress Phosphate limitation Eubacterium eligens ATCC 27750 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium eligens; 8.159211389 8.04155456 8.137438827 7.811108831 7.814821773 8.090138326 8.154512362 7.575643839 239910507 ahpF Stress Oxygen stress Thermococcus gammatolerans EJ3 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus gammatolerans; 7.325980164 7.228211494 6.810816101 6.617337426 170744183 fnr Stress Oxygen stress Methylobacterium sp. 4-46 8.290658737 8.246260257 7.796952414 7.750060267 8.302371547 8.223168679 8.349440107 8.12274147 8.145453028 149914177 AceB Carbon cycling Carbon degradation others Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.858700969 7.651254106 7.711398753 7.526090528 7.526229409 7.944394329 7.847282741 7.806662999 7.674874046 91697199 AceA Carbon cycling Carbon degradation others Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 7.996497351 7.886137843 7.659879362 8.01033264 7.77416319 7.978043448 7.630977228 19421860 PceA Organic Remediation Others Desulfitobacterium hafniense 6.738879674 7.164534052 125862610 CopA Metal Resistance Copper Methanoculleus marisnigri JR1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanoculleus;species:Methanoculleus marisnigri; 7.672291278 7.760371709 7.836645015 7.868073755 8.101933726 8.313421831 7.831641628 7.540498619 7.769677808 164598132 exoglucanase Carbon cycling Carbon degradation Cellulose Chlorophyllum molybdites superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Agaricaceae;genus:Chlorophyllum; 7.433979133 7.61342478 7.883648642 7.850913496 7.424881086 7.964124268 7.699259527 7.655109797 7.877450027 71367942 CODH Carbon cycling Carbon fixation Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 6.865125333 7.340610085 7.221079359 7.196656829 7.176574718 7.317955864 148512080 phdCI Organic Remediation Aromatics Polycyclic aromatics Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.36493678 7.530549427 7.568660652 7.233241484 7.542787622 7.724145186 7.456019205 7.702291035 116251631 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.394036093 7.214329416 7.377054041 6.675404877 6.941623713 7.545273737 7.185293609 6.899165757 7.146447685 158935557 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.037047834 7.013354522 227422546 sigma_38 Stress Sigma factors Denitrovibrio acetiphilus DSM 12809 superkingdom:Bacteria;phylum:Deferribacteres;class:Deferribacteres;order:Deferribacterales;family:Deferribacteraceae;genus:Denitrovibrio;species:Denitrovibrio acetiphilus; 7.444011702 7.565385333 7.448669977 7.076764993 7.613422632 7.352120132 7.220591983 146282380 Arylest Organic Remediation Aromatics Other aromatics Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 7.906838102 7.634815566 7.465060143 7.536214172 7.693653088 7.850400286 7.461056112 7.436014235 7.52233317 45441245 iro virulence Yersinia pestis biovar Microtus str. 91001 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia pestis; 6.937951774 7.633180283 238750243 xylA Carbon cycling Carbon degradation Hemicellulose Yersinia rohdei ATCC 43380 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia rohdei; 7.326478744 7.425488709 7.530869621 7.124594929 7.004144556 7.772947071 7.29471701 7.457940103 7.256240205 238061328 pstB Stress Phosphate limitation Micromonospora sp. ATCC 39149 8.612439225 8.32926689 8.252967017 8.289888605 8.939488376 8.570513703 8.666999823 8.614795448 8.901075323 59710624 amyA Carbon cycling Carbon degradation Starch Vibrio fischeri ES114 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Vibrio fischeri; 6.928836068 7.211311725 6.904257537 219949085 B_lactamase_C Antibiotic resistance Beta-lactamases Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 7.678622047 7.820740211 7.839618125 7.347484381 7.912977017 7.996876468 7.99743904 8.05357358 7.740511737 196186529 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Brevundimonas sp. BAL3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas; 7.581952518 7.827529508 7.852267003 7.483828488 7.885843754 7.93236305 8.235124693 7.890375913 7.837219538 133740332 sigma_24 Stress Sigma factors Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 7.886843437 7.867931181 7.488429135 7.238811827 7.839620984 8.010676457 7.883836635 7.497153195 7.940743204 85815566 nirS Nitrogen Denitrification Pseudomonas chloritidismutans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.267404831 7.218124561 7.704281376 7.616935618 7.345720275 7.30840617 7.328063195 146303526 thioredoxin Bioleaching Sulphur Metallosphaera sedula DSM 5348 6.902785005 6.829369712 7.126431858 260635557 B_lactamase_C Antibiotic resistance Beta-lactamases Prevotella sp. oral taxon 472 str. F0295 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella sp. oral taxon 472; 7.297929099 7.24226179 7.280147224 7.094932924 7.507717986 7.33809461 6.987445521 7.451987726 156108627 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 7.898871406 7.699821966 7.385520797 7.447962568 7.835280475 7.635445615 7.523650921 7.923456132 42524012 fnr Stress Oxygen stress Bdellovibrio bacteriovorus HD100 7.240537986 7.046793332 6.86056769 6.712811419 6.872752946 225375875 amyA Carbon cycling Carbon degradation Starch Roseburia inulinivorans DSM 16841 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia inulinivorans; 7.588894008 7.078848169 7.575805567 7.09690063 7.155755972 7.601807348 7.192072336 6.970473108 7.308036346 13195100 dsrB Sulphur sulfite reductase Desulfotomaculum nigrificans superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 7.552103304 7.654737622 7.560778081 7.244880048 7.525042019 7.691390126 7.646263701 7.617294449 7.447922151 196189400 hrcA Stress Heat shock Synechococcus sp. PCC 7335 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.761850045 7.623838513 7.489270546 7.917910481 7.961830671 7.835696226 7.410004181 121998156 nrfA Nitrogen Dissimilatory N reduction Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 7.72987434 7.70115788 7.086148956 7.754563408 83836536 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 8.076534466 8.067221147 7.833287259 7.780009006 8.154503698 8.113697071 8.096919567 7.962280609 7.871084784 162312044 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.701623786 7.832794479 7.865310506 7.588148001 7.758833701 7.778277547 7.618016598 7.591509187 258524768 sigma_70 Stress Sigma factors Desulfurivibrio alkaliphilus AHT2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfurivibrio;species:Desulfurivibrio alkaliphilus; 7.749830003 7.664134866 7.617421393 7.662884368 7.938593743 7.980660963 7.777174373 7.334986565 7.805593833 171914521 pstB Stress Phosphate limitation Verrucomicrobium spinosum DSM 4136 7.669941671 7.657356328 7.19730877 7.373859925 7.333991524 7.632794669 7.328659919 7.514740502 7.598596165 261284238 sigma_70 Stress Sigma factors Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.377479249 7.174615819 7.136742246 7.058471249 7.629446288 110820674 vanA Carbon cycling Carbon degradation Others Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.154241168 8.048420251 7.80396177 7.770641245 8.256496367 8.075035448 8.107944661 8.092786146 8.221207758 83839282 SilA Metal Resistance Silver Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 7.641011468 7.845732214 7.595202995 7.277052578 7.45068526 8.033727018 7.559481049 7.550143774 7.470540038 146297463 nifH Nitrogen Nitrogen fixation Caldicellulosiruptor saccharolyticus DSM 8903 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Caldicellulosiruptor;species:Caldicellulosiruptor saccharolyticus; 7.465727711 8.185379349 7.481551793 7.488622299 7.657107467 8.029151797 8.247936509 7.655834145 218172481 pstB Stress Phosphate limitation Cyanothece sp. PCC 7424 7.598525734 7.318752212 7.159391555 7.187502771 6.837641442 36785546 mhpC Organic Remediation Aromatics Aromatic carboxylic acid Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 6.807325847 7.267175717 6.817065077 7.523053427 7.051247878 7.5094914 149204818 CODH Carbon cycling Carbon fixation Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.418911385 7.339640586 6.999316161 7.596333366 30249898 grpE Stress Heat shock Nitrosomonas europaea ATCC 19718 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas europaea; 7.950593881 7.693325234 7.995631758 7.701142026 7.773391647 7.882970784 18073936 nrfA Nitrogen Dissimilatory N reduction Desulfovibrio desulfuricans superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 6.868868839 7.600619126 239579659 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.114416049 7.838962962 170076992 sigma_70 Stress Sigma factors Synechococcus sp. PCC 7002 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.118160297 7.660729583 7.384087779 7.711664076 72123012 tftH Organic Remediation Aromatics Chlorinated aromatics Ralstonia eutropha JMP134 8.022600724 7.991246697 7.728394849 7.68037486 8.212129363 8.289977194 8.241024798 7.90446417 7.965400094 154352778 obgE Stress Radiation stress Bacillus amyloliquefaciens FZB42 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 7.750573254 7.836784455 7.436032324 7.609710288 7.656797887 7.752939641 8.135264132 7.766004014 32447078 BDO Organic Remediation Aromatics BTEX and related aromatics Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 7.439121713 7.157827708 133738332 katA Stress Oxygen stress Herminiimonas arsenicoxydans 7.786719021 7.527124409 7.532579849 7.443402725 7.657571989 7.83162787 7.023719299 7.376763867 7.784666455 25028787 AceB Carbon cycling Carbon degradation others Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 7.770959816 7.626838846 7.455446857 7.263452366 7.511172283 7.74396442 7.710213566 7.54219325 7.913509754 219939156 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.279809711 7.312758852 7.631146678 7.44728538 6.866063366 7.202512249 7.375266135 256359843 narH Stress Oxygen limitation Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 8.343200782 7.795499222 7.23771173 8.07573251 8.037706045 7.947355151 8.012483984 7.959170263 23126418 linB Organic Remediation Pesticides related compound Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 7.600038668 7.145230401 7.401743423 7.231714238 6.933196106 7.292221833 7.354003086 196210991 bclA Organic Remediation Aromatics Aromatic carboxylic acid Geobacillus sp. G11MC16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 6.998969959 7.410387352 7.391691846 6.910145517 6.942640978 7.656542604 7.140780645 7.028608202 7.244361892 110638958 ahpF Stress Oxygen stress Cytophaga hutchinsonii ATCC 33406 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Cytophaga;species:Cytophaga hutchinsonii; 7.563664014 7.331744818 7.587740343 7.55936015 7.418554654 7.552715066 7.741699564 7.621033639 165880067 exoglucanase Carbon cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.679147458 7.670844471 7.417979722 7.214459229 7.559647939 7.359829401 7.411649626 125974579 exoglucanase Carbon cycling Carbon degradation Cellulose Clostridium thermocellum ATCC 27405 6.875733187 7.332520596 313111 ara Carbon cycling Carbon degradation Hemicellulose Cellvibrio japonicus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio; 8.118739964 7.860749823 7.541805779 8.025910507 7.892818426 7.937660481 7.929506895 8.332610987 7.79714923 83631682 pstA Stress Phosphate limitation Hahella chejuensis KCTC 2396 7.943948727 7.91962762 7.597228766 7.647444999 8.216455726 7.532171766 7.844741823 7.890792324 8.031723705 192287371 pstC Stress Phosphate limitation Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.006110376 8.081351153 8.167848034 8.130443015 8.58610576 8.34699234 8.25887699 8.045121486 8.255796632 26988577 iro virulence Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.547789824 7.432708894 7.655806399 7.116800012 7.513719596 7.4914629 7.687709028 7.462135241 7.436577409 269121646 nplT Carbon cycling Carbon degradation Starch Sebaldella termitidis ATCC 33386 7.12309924 7.495354925 119461417 grpE Stress Heat shock marine gamma proteobacterium HTCC2080 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.050976015 7.094978239 6.92167803 7.470544015 7.016478394 6.775237633 7.258518192 255519325 nirK Nitrogen Denitrification proteobacterium D198b superkingdom:Bacteria;phylum:Proteobacteria; 7.424904524 7.786816671 7.700531511 7.88098378 7.590967871 7.902608712 7.675730662 7.724483464 7.482496155 116102211 ppx Phosphorus Phosphorus utilization Pediococcus pentosaceus ATCC 25745 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Pediococcus;species:Pediococcus pentosaceus; 7.185378337 7.072036869 7.183824025 7.119577261 6.836614538 7.213985394 126035173 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.151940063 6.971508201 7.109587382 125498898 clpC Stress Protein stress Streptococcus sanguinis SK36 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus sanguinis; 7.597956542 7.316975185 7.293243633 220711726 ophC Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.176784112 7.306073417 7.30226381 6.86635764 7.107731554 7.575522984 7.380291392 7.383617776 7.332713889 256672178 B_lactamase_C Antibiotic resistance Beta-lactamases Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7.45918231 7.780886648 7.196922331 7.813113574 7.73731012 7.586809356 7.53816158 7.621855255 208010314 amyA Carbon cycling Carbon degradation Starch Aliivibrio salmonicida LFI1238 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Aliivibrio salmonicida; 7.430436075 7.041596413 7.232159696 259907369 dnaK Stress Heat shock Erwinia pyrifoliae Ep1/96 7.557548732 7.711226797 7.731404489 7.796508196 8.000612688 7.93488508 7.989913527 8.19683037 8.103365148 83576724 proV Stress Osmotic stress Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 7.938505729 8.312388116 7.767375916 7.320621414 8.254976915 7.79331766 7.945520851 8.042091363 8.192674136 32453645 endolysin_glycosidase Bacteria phage LYSIS Enterobacteria phage RB69 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.198627164 7.279846667 227548851 glnA Stress Nitrogen limitation Corynebacterium lipophiloflavum DSM 44291 7.818251662 7.688598162 7.544752367 7.534501838 7.911709015 7.627150105 7.467979023 7.752416583 118434931 catB Organic Remediation Aromatics BTEX and related aromatics Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 6.865068687 7.266476664 7.217054045 6.880553853 7.034445617 6.961054766 7.290346386 256821366 ahpF Stress Oxygen stress Kangiella koreensis DSM 16069 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Kangiella;species:Kangiella koreensis; 7.156721653 7.402616017 7.431962194 7.548941515 7.203378893 7.958476073 7.443238987 7.344938342 7.763254942 142851463 TerC Metal Resistance Tellurium Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 7.515118259 7.42094208 7.116646108 7.185449687 7.739275321 84778749 sigma_70 Stress Sigma factors Sodalis glossinidius str. 'morsitans' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Sodalis;species:Sodalis glossinidius; 7.109920804 7.198634843 7.084604667 7.681473608 7.200869456 7.203166456 7.340117873 161787520 obgE Stress Radiation stress Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 8.112967791 7.706690008 7.584853659 7.901485165 8.091935831 7.861617957 7.668557707 7.946257441 7.61865216 241212686 obgE Stress Radiation stress Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 7.659555494 7.486409822 7.648392389 7.701100259 7.358290892 7.786227397 7.353684968 7.587101265 7.418098381 251799845 katE Stress Oxygen stress Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.673430411 7.615859052 7.560606687 7.124939237 7.729591598 7.847686249 7.948919941 260772839 fnr Stress Oxygen stress Vibrio metschnikovii CIP 69.14 7.352799487 7.028423041 6.726885125 7.421928694 217067423 pap virulence adhesin Bacillus cereus AH187 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 6.970320546 7.097205354 189188426 Catechol Organic Remediation Aromatics Other aromatics Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7.899979912 7.605238319 7.408532501 7.366559764 7.321352727 7.637538722 7.522983913 7.465845997 7.682332999 255331536 pstC Stress Phosphate limitation Geobacillus sp. Y4.1MC1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 6.970608961 7.189074931 227457186 glnA Stress Nitrogen limitation Sulfolobus islandicus L.S.2.15 7.10282705 7.072025258 6.514428952 7.479085183 57224158 rd Organic Remediation Chlorinated solvents Dehalococcoides ethenogenes 195 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides;species:Dehalococcoides ethenogenes; 7.486399516 7.104172364 7.524030483 194367487 fnr Stress Oxygen stress Stenotrophomonas maltophilia R551-3 7.566667981 7.434045919 7.338189584 7.422238844 6.987782731 7.97005301 7.193868408 7.188266815 7.26803694 86169577 gyrB other category gyrB Weissella confusa superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Weissella; 7.523537246 7.41468968 7.555685697 6.961297443 7.347133137 7.793364291 7.652857218 7.411528237 7.300988893 166859920 Mex Antibiotic resistance transporter Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.676190829 8.034638997 7.913991617 8.11492507 7.684131181 7.506059028 7.710581691 7.983834521 112463015 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.382446985 7.263039338 7.210891339 6.877205224 7.592157008 7.107883239 6.877830283 7.063964008 11078729 gyrB other category gyrB Marinobacterium stanieri superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacterium; 7.17663407 7.397922238 7.656134915 6.623027482 146345712 ctsR Stress Protein stress Clostridium kluyveri DSM 555 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium kluyveri; 7.150502283 7.12079216 270159274 pilin virulence pilin Legionella longbeachae D-4968 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella;species:Legionella longbeachae; 7.33580034 7.129079181 6.955804024 6.773549438 7.485609002 7.232647044 7.040146485 6.943976145 150840056 katE Stress Oxygen stress Actinobacillus succinogenes 130Z superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus succinogenes; 7.058590004 7.275560682 7.103219944 7.124159583 7.265113164 121709805 endochitinase Carbon cycling Carbon degradation Chitin Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 6.499041643 7.355176535 13358820 gyrB other category gyrB Porphyromonas levii superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas; 7.527530581 7.663378694 7.396158122 7.227872715 7.195277886 7.689132727 7.125976951 7.276739667 7.495543857 256832734 ahpC Stress Oxygen stress Jonesia denitrificans DSM 20603 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 7.024608814 7.212885252 7.465339296 7.339028325 7.711833454 116264131 dehH109 Organic Remediation Chlorinated solvents Polynucleobacter sp. QLW-P1DMWA-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 7.42762399 7.286972908 7.257676726 6.953343897 7.587546109 262165772 katE Stress Oxygen stress Vibrio mimicus VM223 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 7.046758028 7.195846286 7.31791482 6.916946728 7.691499151 7.08143638 7.015427769 6.972071309 114767012 sox Sulphur Sulphur oxidation Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.652112196 7.87312882 7.551839923 7.606585792 7.820605962 7.92717385 7.557809387 7.578766544 7.633899134 151302283 APS_AprB Sulphur adenylylsulfate reductase Desulfobacterium corrodens superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium; 7.301984086 6.957889201 167033519 nmoA Organic Remediation Aromatics Nitoaromatics Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.107969902 7.962553667 7.612237526 7.764303482 8.328011956 8.050231125 8.133683602 7.867410985 8.148023376 162568547 aoxB Metal Resistance Arsenic uncultured bacterium superkingdom:Bacteria; 7.483064231 7.54821004 7.779522913 7.1230306 7.655408348 7.519675676 7.490400752 7.620463645 7.628966109 53850115 sox Sulphur Sulphur oxidation Pseudaminobacter salicylatoxidans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Pseudaminobacter; 7.010058587 7.327402247 6.969793529 7.12395345 150258151 ChrA Metal Resistance Chromium Victivallis vadensis ATCC BAA-548 superkingdom:Bacteria;phylum:Lentisphaerae;family:Victivallaceae;genus:Victivallis;species:Victivallis vadensis; 6.911010386 7.099372615 7.436965366 6.988657146 6.849427858 161324436 MATE_antibiotic Antibiotic resistance transporter Kordia algicida OT-1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Kordia;species:Kordia algicida; 6.855021266 7.053483424 6.598004958 7.80353872 213536681 exoglucanase Carbon cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 6.747756211 7.270979127 148927752 obgE Stress Radiation stress candidate division TM7 genomosp. GTL1 superkingdom:Bacteria; 7.336587509 7.415102505 7.085837965 7.261425448 6.937269945 7.036122723 7.632351275 60494240 pcc Carbon cycling Carbon fixation Bacteroides fragilis NCTC 9343 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 7.184085652 7.443916677 7.549802581 7.462355805 7.957923757 7.16588824 7.19176554 119693489 alkB Organic Remediation Other Hydrocarbons Mycobacterium sp. KMS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.866506477 7.838387055 7.631949314 7.595148061 7.454960828 8.083111706 7.546230235 7.337407788 7.425304068 196229503 pstC Stress Phosphate limitation Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 7.214545984 7.080237157 7.500277948 163855694 BADH Organic Remediation Aromatics Other aromatics Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 7.597584161 7.538708725 7.637675434 7.235397864 7.825609644 7.751767141 7.68055738 7.744259956 283796304 sigma_70 Stress Sigma factors Clostridium sp. M62/1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 7.116732125 7.239459276 6.874690414 7.275099934 7.752531929 6.865905181 7.386549589 192764402 narG Nitrogen Denitrification uncultured bacterium 8.117398039 7.904977463 7.514131386 7.904617261 7.989956383 7.825992639 7.58114121 7.774801216 219861221 pheA Organic Remediation Aromatics Other aromatics Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 9.531412303 9.647727012 9.663068311 9.729482462 9.926739684 9.575350516 9.433511432 9.696185427 26454332 FTHFS Carbon cycling Acetogenesis Mycoplasma penetrans HF-2 superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Mycoplasmatales;family:Mycoplasmataceae;genus:Mycoplasma;species:Mycoplasma penetrans; 7.30708464 7.166876056 90331507 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid marine gamma proteobacterium HTCC2207 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.286644442 7.941405533 7.745254826 7.773183392 7.820100652 7.914724755 7.651011811 7.652566567 7.53766651 46114714 pheA Organic Remediation Aromatics Other aromatics Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 7.334151762 7.596644539 7.455529304 7.174939483 7.366907094 7.761458354 7.395711764 7.230351482 7.60002802 67919377 nifH Nitrogen Nitrogen fixation Chlorobium limicola DSM 245 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium limicola; 8.039462563 8.24871244 8.438305014 8.651796061 8.06243979 8.251133265 8.058492099 8.268960615 7.924075496 114330510 fnr Stress Oxygen stress Nitrosomonas eutropha C91 7.020550177 7.208680933 7.233834444 7.132645752 7.368303759 269826634 amyA Carbon cycling Carbon degradation Starch Vibrio alginolyticus 40B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 7.136345842 7.269763574 7.428716986 6.859908178 6.635773791 7.709044446 6.971382257 6.887970626 7.326042627 205374432 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bacillus coahuilensis m4-4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coahuilensis; 7.528329259 6.992975458 7.268653995 7.089111531 7.053008232 154350791 SMR_antibiotics Antibiotic resistance transporter Bacillus amyloliquefaciens FZB42 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 6.889920769 6.890360394 7.258428475 6.863055899 6.938491405 140713835 nasA Nitrogen Assimilatory N reduction uncultured marine bacterium superkingdom:Bacteria; 7.836587012 7.762610908 8.102134756 6.750740775 7.408112282 7.484339783 7.731126458 109290310 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.614754334 7.566136688 7.575795263 7.421023162 7.988541159 214037946 atzA Organic Remediation Herbicides related compound marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.03685946 7.501217917 212539129 ChrA Metal Resistance Chromium Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 8.014496393 7.435902556 7.422685487 7.405229656 7.573778096 7.741173284 7.538175682 7.421728832 7.107013694 89949847 xylanase Carbon cycling Carbon degradation Hemicellulose Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 7.325893932 7.124756789 7.406432991 39301 nplT Carbon cycling Carbon degradation Starch Alicyclobacillus acidocaldarius 7.656732318 7.43656909 7.49559142 7.331179007 6.796237341 7.120425183 7.473374983 7.627801052 78357316 cytochrome Energy process Energy process Desulfovibrio desulfuricans G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 7.488111878 7.119188064 7.651767651 7.636863986 7.25729943 257455022 pilin virulence pilin Enhydrobacter aerosaccus SK60 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Enhydrobacter;species:Enhydrobacter aerosaccus; 7.512334113 7.351845714 7.723360151 7.586862077 7.647197931 7.690129358 7.475344814 7.62502492 7.794543048 225680040 glx Carbon cycling Carbon degradation Lignin Paracoccidioides brasiliensis Pb03 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides;species:Paracoccidioides brasiliensis; 7.839867706 7.826636651 7.624171779 7.508912434 7.361022536 7.837308643 7.558648683 7.436060157 7.50730215 169813555 katE Stress Oxygen stress Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 7.934209305 7.809869229 7.804946725 7.478693473 7.536508746 8.046193352 7.491955706 7.304126989 212544220 atzA Organic Remediation Herbicides related compound Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.759548303 7.331357266 7.415119761 7.493130015 7.677278008 7.315536166 7.03750161 7.320202953 52784548 cellobiase Carbon cycling Carbon degradation Cellulose Bacillus licheniformis ATCC 14580 7.598765799 7.704115621 7.575692881 7.316234346 7.824145118 8.355096927 7.837605788 7.740712777 134300371 obgE Stress Radiation stress Desulfotomaculum reducens MI-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum reducens; 7.337885935 7.482631496 6.947130468 7.664743459 7.244177205 7.111531936 78065104 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.522855089 7.580378171 7.367749549 7.186295537 6.96405094 7.721362502 7.232190693 7.073323628 7.262298915 67738337 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Burkholderia pseudomallei 668 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 7.679035392 8.110313881 7.815138151 8.079167033 8.353895146 8.332160434 7.73883941 8.102484486 15603619 dmsA Organic Remediation Others Pasteurella multocida subsp. multocida str. Pm70 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Pasteurella;species:Pasteurella multocida; 6.998865463 7.041874831 6.849796605 6.377099466 7.490022115 7.021828991 7.05597603 7.485009389 121495572 narG Nitrogen Denitrification uncultured bacterium 7.554722083 7.62759189 7.315681131 7.348746032 7.424002805 7.784725533 7.345774098 7.168184664 7.353234272 67008218 cmuA Organic Remediation Chlorinated solvents Rhodobacteraceae bacterium 179 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 7.894900487 7.785893218 7.949874197 8.016982344 8.478255131 8.216005728 8.024323781 8.429598415 13093906 catB Organic Remediation Aromatics BTEX and related aromatics Mycobacterium leprae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.355673466 7.332138267 7.955199818 7.790205734 7.500083562 8.211961499 7.548718752 7.541886422 7.408536054 2102700 gyrB other category gyrB Treponema pallidum superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema; 6.945781353 7.266260653 7.064317726 7.782723226 6.932071157 7.352676481 7.442733622 67856970 sigma_70 Stress Sigma factors Crocosphaera watsonii WH 8501 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Crocosphaera;species:Crocosphaera watsonii; 7.384146898 7.033625856 7.177536833 118439015 sigma_32 Stress Sigma factors Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 7.121109725 7.503526901 7.512807111 7.372819633 7.302495869 8.005102472 7.752560888 8.11152355 118471089 nmoA Organic Remediation Aromatics Nitoaromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 7.536912884 7.529603709 7.898628208 7.899788787 7.512997502 8.336696096 7.657365862 7.725864053 7.580434811 88818809 silP Metal Resistance Silver Pseudoalteromonas tunicata D2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas tunicata; 7.471679648 7.225465235 7.24396429 7.469502497 7.555636393 7.359279047 78357067 cytochrome Energy process Energy process Desulfovibrio desulfuricans G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 7.122714264 7.154980349 154705969 phoB Stress Phosphate limitation Coxiella burnetii Dugway 5J108-111 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Coxiellaceae;genus:Coxiella;species:Coxiella burnetii; 7.332348504 7.477618824 7.770724467 7.768501288 6.907131585 7.475317852 7.242581784 7.579110884 110824271 pcpE Organic Remediation Herbicides related compound Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7.946123228 7.72420187 8.079630099 8.222316303 8.586578587 8.441690379 8.246499419 8.116611041 169351074 ChrA Metal Resistance Chromium Clostridium spiroforme DSM 1552 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichi;order:Erysipelotrichales;family:Erysipelotrichaceae;species:Clostridium spiroforme; 7.201028901 7.28367525 7.121512975 7.278338586 7.301593176 167629430 ctsR Stress Protein stress Heliobacterium modesticaldum Ice1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Heliobacteriaceae;genus:Heliobacterium;species:Heliobacterium modesticaldum; 7.592699395 7.60196842 7.602282532 7.259089403 7.669161028 7.997552971 7.932089679 7.80164629 7.714675654 224463756 sigma_70 Stress Sigma factors Methylophaga thiooxidans DMS010 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Methylophaga;species:Methylophaga thiooxidans; 6.896477697 7.478750623 7.461676187 6.908752958 7.537337849 7.077060296 7.175270104 189496744 amyA Carbon cycling Carbon degradation Starch Chlorobium phaeobacteroides BS1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 7.675947645 7.615397331 7.540091481 7.51904398 7.992835758 8.21132344 7.795980343 7.22308048 7.623507389 156110458 mannanase Carbon cycling Carbon degradation Hemicellulose Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 7.92574892 8.17346487 8.258061116 7.955277041 8.121421237 8.125319857 8.341992397 8.428440284 8.217004607 85837887 SMR_antibiotics Antibiotic resistance transporter Vibrio sp. MED222 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.069246896 7.385836409 7.467518422 7.279185134 7.079788919 7.151164759 7.248312874 241463654 AceA Carbon cycling Carbon degradation others Allochromatium vinosum DSM 180 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 7.473057997 7.282649062 7.463488866 7.428980571 7.695627374 7.950049406 7.740173527 7.426084955 7.277021736 262372449 sigma_32 Stress Sigma factors Acinetobacter junii SH205 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter junii; 7.780668891 7.512274846 7.296155813 242371847 iuc virulence aerobactin Staphylococcus epidermidis M23864:W1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus epidermidis; 6.856965462 6.96226936 67904346 pheA Organic Remediation Aromatics Other aromatics Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.813259476 7.742479784 7.44473827 7.850677868 7.718664668 8.004805748 7.901966131 7.922382432 7.435114021 237846110 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.165805876 8.027144785 7.792034096 7.676160141 7.504411203 7.976115385 7.235810288 7.547136709 7.519810486 238706883 SMR_antibiotics Antibiotic resistance transporter Yersinia ruckeri ATCC 29473 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia ruckeri; 7.458496325 7.392183013 7.275904087 7.048957224 7.205040396 7.642428345 7.246879943 7.417661072 7.407383295 225169937 sigma_70 Stress Sigma factors Dethiobacter alkaliphilus AHT 1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Syntrophomonadaceae;genus:Dethiobacter;species:Dethiobacter alkaliphilus; 7.448864679 7.25475671 7.465780307 7.298788418 7.951532032 254446141 sigma_24 Stress Sigma factors Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 7.290543695 7.256715916 7.283937716 7.010428441 6.749928621 7.41868845 7.21081809 6.869206302 84686388 AceB Carbon cycling Carbon degradation others Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.264006323 7.1659383 7.463527242 7.763148596 6.91707253 7.060763855 7.414552437 61394019 terminal_protein_linear_DNA_phage Bacteria phage REPLICATION Enterobacteria phage PR4 family:Tectiviridae;genus:Tectivirus;species:Enterobacteria phage PRD1; 7.251880938 7.247359335 7.189200006 6.993671977 6.865996029 7.540101225 7.158321804 7.076834373 7.314065021 50839921 obgE Stress Radiation stress Propionibacterium acnes KPA171202 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 7.445614158 7.051089771 7.078598143 7.124625467 7.433968164 229917621 AceA Carbon cycling Carbon degradation others Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 7.146211602 7.325840724 7.745988347 7.83936207 7.005813605 8.091791707 7.252795384 7.48498343 7.847391144 171090037 CopA Metal Resistance Copper Geobacillus sp. WCH70 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.442349928 7.532072023 7.367753128 7.201396187 7.495468195 7.855350925 7.298222473 7.497881159 7.646621782 257056603 proV Stress Osmotic stress Saccharomonospora viridis DSM 43017 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora viridis; 8.559980095 8.348106982 8.052819038 8.249030588 8.537540362 8.114306522 8.314107002 8.041751331 8.177991239 229106174 katE Stress Oxygen stress Bacillus cereus Rock3-28 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 7.390320732 7.481773286 7.134637778 7.225693489 6.928900231 7.575922758 118727518 gyrB other category gyrB Clostridium cellulolyticum H10 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium cellulolyticum; 7.925059868 7.533766603 7.906930328 7.789166433 7.223101745 7.851267317 7.90303685 7.922039503 7.570369971 115400601 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.606359643 7.514253439 7.417499299 7.591389797 7.490188624 7.514167508 7.575473598 6.875770092 87302472 ZntA Metal Resistance Zinc Synechococcus sp. WH 5701 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.312485601 8.348484851 8.313349649 7.597176017 8.001869675 7.874502401 8.09592872 8.047694161 8.248787635 153092753 pstC Stress Phosphate limitation Mannheimia haemolytica PHL213 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Mannheimia;species:Mannheimia haemolytica; 7.964583626 7.53603245 7.698075569 7.367610173 7.817220788 58532947 helicase_family_4 Bacteria phage REPLICATION Synechococcus phage S-PM2 7.388602605 7.089716774 6.978787089 6.747598286 6.887953806 118589805 amyA Carbon cycling Carbon degradation Starch Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 7.345103912 7.28282172 7.254481214 7.148125983 7.739329605 162568567 aoxB Metal Resistance Arsenic uncultured bacterium superkingdom:Bacteria; 7.482521114 7.442889472 7.113366384 7.097273922 7.130533178 87136659 nasA Nitrogen Assimilatory N reduction Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 8.170704138 8.093325942 8.142846339 8.417753606 8.037062059 8.08661971 7.960995687 8.2889956 7.648341215 86143553 ChnA Organic Remediation Other Hydrocarbons Flavobacterium sp. MED217 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Leeuwenhoekiella;species:Leeuwenhoekiella blandensis; 7.344205769 7.505575466 7.497809195 7.123918573 6.977587383 7.826722395 7.578264215 7.598110044 7.349713987 147850774 pstB Stress Phosphate limitation Synechococcus sp. RCC307 7.255711411 7.696666643 7.846291046 7.411453805 7.517098677 7.90169125 7.411141711 7.304298341 7.538186278 89160899 gyrB other category gyrB Lactobacillus brevis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus; 7.285339582 7.333618052 7.446200186 7.105896774 223553121 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Tolumonas auensis DSM 9187 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Tolumonas;species:Tolumonas auensis; 7.229135806 7.304786136 7.866675238 7.633285977 7.134882433 7.480975457 7.672376252 7.61643156 198258208 ahpC Stress Oxygen stress Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 7.983377086 7.886073705 7.611928425 7.761730951 8.048936223 8.301342902 8.015105599 7.863259987 8.058190207 116734399 nirK Nitrogen Denitrification Nitrosospira tenuis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira; 7.181311271 7.145821454 209547981 AceA Carbon cycling Carbon degradation others Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.751825811 7.455379655 7.131282262 7.723602942 7.142434116 7.50629119 22164006 nifH Nitrogen Nitrogen fixation Rhodovulum sp. CP-10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodovulum; 7.1293275 6.923981731 7.040992075 6.77920823 7.477615963 7.061310693 6.938523774 213422005 dmsA Organic Remediation Others Salmonella enterica subsp. enterica serovar Typhi str. E01-6750 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 7.125487339 7.063741982 7.291760237 7.474388085 7.891714603 7.209119032 7.511966051 111149272 amyA Carbon cycling Carbon degradation Starch Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 7.989906598 7.854237914 7.605161338 7.788107308 8.257662152 8.059153032 7.973825146 7.835172602 7.826723953 19909709 gyrB other category gyrB Ralstonia sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 6.968248158 7.098437728 7.359326003 7.362520016 6.987335782 6.872427405 7.539959256 262316779 MFS_antibiotic Antibiotic resistance transporter Acinetobacter johnsonii SH046 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter johnsonii; 7.395779365 7.298878168 7.200453127 7.303930174 7.512149012 7.314108706 6.850495596 163736449 pstC Stress Phosphate limitation Phaeobacter gallaeciensis BS107 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 7.289548515 7.493774793 7.451098454 7.625143835 7.722990636 7.812671709 7.5930989 7.796871251 149952115 atzA Organic Remediation Herbicides related compound Alkaliphilus metalliredigens QYMF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus metalliredigens; 6.849613733 7.173364349 7.34003514 7.483102347 7.632098476 7.061326014 7.127014187 7.362228685 213649034 TerC Metal Resistance Tellurium Salmonella enterica subsp. enterica serovar Typhi str. J185 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 6.972380173 7.123414857 192809209 amyA Carbon cycling Carbon degradation Starch Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.528848565 7.332412945 7.387467752 7.309504087 7.368877945 7.451276124 7.197219885 7.509883069 54658510 CadA Metal Resistance Cadmium Cryptosporidium hominis superkingdom:Eukaryota;phylum:Apicomplexa;class:Coccidia;order:Eucoccidiorida;family:Cryptosporidiidae;genus:Cryptosporidium; 7.116763841 7.290495375 6.987067099 7.205903592 7.369399077 222438706 glnA Stress Nitrogen limitation Labrenzia alexandrii DFL-11 7.775408558 7.807378896 7.713333514 7.905532154 7.701214997 8.102995507 8.16136485 7.94241016 120607213 pimF Organic Remediation Aromatics Aromatic carboxylic acid Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 7.803990575 7.45870846 7.926607612 7.97873152 7.428904149 7.323445214 7.952069656 7.304896144 219539125 ChrA Metal Resistance Chromium Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 6.90460332 6.976771931 111919356 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.267411418 7.462271305 7.707942664 7.218273463 7.331480759 7.720466671 7.366064467 7.349998891 192801536 Al Metal Resistance Aluminum Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.76625167 7.833448562 7.619989326 7.328037078 7.695719105 7.558710819 7.335505374 7.931770705 163754291 CopA Metal Resistance Copper Kordia algicida OT-1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Kordia;species:Kordia algicida; 7.465910754 7.763858715 7.544999034 7.304044584 7.425184118 7.896611532 7.759351081 7.430200028 7.756253215 18034308 dsrB Sulphur sulfite reductase Desulfonatronum lacustre superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfonatronumaceae;genus:Desulfonatronum; 7.739893567 7.957114784 7.796079586 8.034704053 7.688468392 8.123509096 7.676211471 8.070593424 7.766481253 91799360 fnr Stress Oxygen stress Nitrobacter hamburgensis X14 7.585284772 7.09376441 7.242115466 7.114244101 7.279350254 270329557 iro virulence Acidovorax avenae subsp. avenae ATCC 19860 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax avenae; 7.529311426 7.424933177 7.614490077 7.887127573 7.3376462 8.186165269 7.376042363 7.547647316 7.391388527 126736898 phn Organic Remediation Herbicides related compound Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.519107021 7.628481485 7.31081813 7.045705571 7.269569598 7.612510156 7.414851665 259503187 sigma_70 Stress Sigma factors Lactobacillus antri DSM 16041 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus antri; 7.717430261 7.327476443 7.623074104 7.172523806 7.222495285 6.911606907 7.34130277 7.496227398 159173941 gyrB other category gyrB Vibrio campbellii AND4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.333060059 7.442785977 7.221696825 6.716391535 7.773881172 6.964372581 7.534490263 257142128 type_III_secretion virulence secretion Burkholderia thailandensis E264 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 7.813369914 7.842433404 7.526396674 7.517469655 7.956398436 7.960146071 7.945976589 7.777619768 7.929958788 111150741 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 7.477700135 7.100643034 7.337946879 7.557984785 7.014139364 7.701861282 7.443204082 7.009073506 7.408861726 150837606 bphA Organic Remediation Aromatics Polycyclic aromatics Marinomonas sp. MWYL1 7.261576862 6.983538427 7.386100995 227237121 obgE Stress Radiation stress Anaerococcus lactolyticus ATCC 51172 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Anaerococcus;species:Anaerococcus lactolyticus; 7.340617878 7.112877938 7.156257941 260881154 ahpC Stress Oxygen stress Mitsuokella multacida DSM 20544 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Mitsuokella;species:Mitsuokella multacida; 7.150397475 7.403242555 7.256379398 7.608115618 7.081546764 7.69948304 7.317475735 7.470530127 7.792655794 83635256 ureC Nitrogen Ammonification Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 8.382227006 8.025741586 8.041695147 8.5278494 8.010011124 8.535184748 8.054139899 8.255296464 8.278925222 259169799 pstA Stress Phosphate limitation Lactobacillus antri DSM 16041 7.143758435 7.198976402 6.855303069 7.358085033 7.390049337 6.875810495 170016363 gyrB other category gyrB Leuconostoc citreum KM20 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc citreum; 7.944476125 7.90726311 7.488307082 8.556776595 7.814254855 8.208249352 7.863787381 8.114400487 7.840737709 29366713 lysin Bacteria phage LYSIS Pseudomonas phage gh-1 order:Caudovirales;family:Podoviridae;genus:T7-like viruses; 8.011295968 8.059547657 7.939736212 7.705172733 8.187604144 7.912440132 7.802254072 7.84241733 7.930349024 238616632 phenol_oxidase Carbon cycling Carbon degradation Lignin Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 7.830570509 7.667352426 7.654803848 7.354216005 7.664905591 7.791714323 7.755964331 7.78082448 7.969208669 88866203 Catechol Organic Remediation Aromatics Other aromatics Jannaschia sp. CCS1 7.448354493 7.734010264 7.789966429 8.078248579 7.179011597 8.269293234 7.548768982 6.993172386 7.656814077 125973625 ArsC Metal Resistance Arsenic Clostridium thermocellum ATCC 27405 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 7.327156083 7.218655357 7.497460316 7.039035746 6.945438087 7.099361578 7.146718888 60476036 rubisco Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.605912653 7.521323346 7.344110567 7.084392777 7.936851066 7.933383578 7.940099569 7.623633706 7.763842074 223585996 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.128688372 6.909884647 7.378366801 6.737637446 6.760669131 7.718335054 114315568 ChrA Metal Resistance Chromium Granulibacter bethesdensis CGDNIH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 6.965203709 6.803911572 7.509662469 7.287188196 7.179999394 18892757 ZntA Metal Resistance Zinc Pyrococcus furiosus DSM 3638 7.21372058 7.167627116 21106322 AceA Carbon cycling Carbon degradation others Xanthomonas axonopodis pv. citri str. 306 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas axonopodis; 7.233264026 7.663857862 7.923653811 7.968041579 7.484493052 8.17147019 7.586235249 7.562169165 7.890139218 18034169 APS_AprA Sulphur adenylylsulfate reductase Desulfofaba gelida superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfofaba; 7.126578771 7.193742147 7.083384524 7.005190873 7.493745878 51244196 nrfA Nitrogen Dissimilatory N reduction Desulfotalea psychrophila LSv54 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfotalea;species:Desulfotalea psychrophila; 7.197821829 6.928675768 109691727 ppx Phosphorus Phosphorus utilization Campylobacter jejuni subsp. doylei 269.97 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter jejuni; 6.9466793 7.000750332 7.245174684 84509019 Catechol Organic Remediation Aromatics Other aromatics Loktanella vestfoldensis SKA53 7.846687058 8.016497819 8.27509845 7.91841104 8.142436935 8.215878443 7.990785244 8.201790506 8.07155127 60594779 nplT Carbon cycling Carbon degradation Starch Anoxybacillus flavithermus 6.737684427 7.086347737 6.939104702 7.064940466 76666825 APS_AprB Sulphur adenylylsulfate reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.489162279 7.537092551 7.28256564 7.099185201 7.386082664 7.543574443 7.097027144 7.441136387 91710714 katE Stress Oxygen stress Methylobacillus flagellatus KT superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 7.705245103 7.477605884 7.599316051 7.593802876 7.655228811 7.930944804 7.895508904 7.833974717 7.533417574 94425190 fnr Stress Oxygen stress Sphingomonas sp. SKA58 7.09019096 7.203348613 7.453168522 224712610 hzo Nitrogen Anammox uncultured planctomycete 7.287240596 7.309638019 7.060162662 7.183475414 6.934139498 7.749624378 7.245155491 7.408801649 157150032 tutFDG Organic Remediation Aromatics BTEX and related aromatics Streptococcus gordonii str. Challis substr. CH1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus gordonii; 7.22836896 7.093853355 7.63618626 7.69988222 7.245762934 7.182704356 7.181322928 7.278507554 7.484493326 139478549 mer Metal Resistance Mercury uncultured soil bacterium superkingdom:Bacteria; 7.910480628 7.964353011 7.688595621 8.080540352 8.379782715 8.402751948 8.051944857 8.053599639 15026876 pcpE Organic Remediation Herbicides related compound Burkholderia cepacia superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.893433639 7.655634501 7.391436595 7.595334225 7.468766114 8.118869026 7.563310919 7.501015217 7.479291194 99038912 oxyR Stress Oxygen stress Ruegeria sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.425346763 7.540793561 7.207612594 7.163641812 7.257006244 7.816075939 7.584492731 7.095515914 7.237589261 190994620 Arylest Organic Remediation Aromatics Other aromatics Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 7.648272663 7.485246774 7.50502686 7.626359474 7.379600712 7.943370056 7.582018894 7.62419912 7.66014251 145240281 pheA Organic Remediation Aromatics Other aromatics Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.182411733 7.401191716 7.638656025 161379154 CadA Metal Resistance Cadmium Oceanibulbus indolifex HEL-45 7.744554488 8.434026285 8.063476689 7.852793073 7.790076541 7.884282808 7.922483044 8.103188916 7.780632825 224610124 fnr Stress Oxygen stress Thioalkalivibrio sp. K90mix 7.620239912 7.62421741 7.523659403 6.873446621 108765209 glnA Stress Nitrogen limitation Rubrobacter xylanophilus DSM 9941 7.592975324 7.869773931 7.827093184 7.952154833 7.58401331 7.896243401 7.60224116 7.559801133 7.43728703 19917978 nifH Nitrogen Nitrogen fixation Methanosarcina acetivorans C2A superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina acetivorans; 7.269149765 7.096564084 247537313 sigma_24 Stress Sigma factors Dickeya zeae Ech1591 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 7.614455449 7.597050572 7.667556149 7.551952368 7.56201207 7.449289054 7.563150113 7.529905814 7.473754105 193888337 thmAB Organic Remediation Others Rhodococcus sp. YYL 8.063151526 8.102678979 7.70014093 7.991770287 8.172672233 8.0943031 8.473127167 8.49205917 8.477603104 254433311 SMR_antibiotics Antibiotic resistance transporter Nitrosococcus oceani AFC27 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 7.972821282 7.622525668 7.741121234 172041493 grpE Stress Heat shock Corynebacterium urealyticum DSM 7109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium urealyticum; 7.147691032 7.515006842 7.56855267 7.795272301 7.311860313 7.205531914 7.609007343 114800327 AceB Carbon cycling Carbon degradation others Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 7.771496551 7.989177658 7.852689356 7.502914359 7.937499514 7.896688184 7.705964343 7.763515843 7.412999938 116750383 atzA Organic Remediation Herbicides related compound Syntrophobacter fumaroxidans MPOB 7.878854955 7.502033786 7.335066282 7.154390856 7.382781693 7.671152673 7.504374255 7.271471316 7.628274767 161382130 vanA Carbon cycling Carbon degradation Others Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 7.421131694 7.510769935 7.265828747 6.88065973 161389211 pimF Organic Remediation Aromatics Aromatic carboxylic acid Phaeobacter gallaeciensis BS107 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 7.597202088 7.699967488 7.369326773 7.773973627 7.617848295 7.716839478 7.584206292 7.404969851 152976922 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bacillus cereus subsp. cytotoxis NVH 391-98 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cytotoxicus; 7.225174234 6.964005233 42558729 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Arthrobacter aurescens superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.146006246 7.445586371 7.66141143 7.778010106 7.194248525 7.414865373 7.368901937 7.507343953 83845655 CadA Metal Resistance Cadmium Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 7.784849709 7.587026295 7.845377439 254480491 pstB Stress Phosphate limitation marine gamma proteobacterium HTCC2148 8.030176821 8.121963562 7.977209633 7.713905626 7.801469959 7.831599031 7.795652354 8.093378712 154250988 silC Metal Resistance Silver Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 7.844434858 7.822556068 7.405764262 7.443719818 7.752346988 7.691896802 7.803903869 7.867133935 7.832296539 228989846 pstA Stress Phosphate limitation Bacillus pseudomycoides DSM 12442 6.962177354 6.689145399 7.158345687 6.828245003 7.619536951 93451339 proV Stress Osmotic stress delta proteobacterium MLMS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 8.214854539 7.996499777 7.991850711 7.936790517 56312194 pimF Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 7.79802876 7.363767946 7.059029694 7.180640389 7.507204585 7.278952875 7.400167076 237728154 nrfA Nitrogen Dissimilatory N reduction Citrobacter sp. 30_2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter; 7.375664675 7.521812539 7.283796354 7.275669731 7.478817205 7.454622794 8.087967872 257049200 Tet Antibiotic resistance other Leptotrichia buccalis C-1013-b superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteria;order:Fusobacteriales;family:Fusobacteriaceae;genus:Leptotrichia;species:Leptotrichia buccalis; 7.329395318 7.410242854 7.176980594 6.891296644 7.644545623 7.148733374 6.869055961 7.387969417 209486081 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.936411081 8.803344155 8.683610058 8.629695198 8.888378408 8.779672436 8.856878366 8.688219987 9.037794596 238704389 xylA Carbon cycling Carbon degradation Hemicellulose Yersinia aldovae ATCC 35236 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia aldovae; 7.29660972 7.329860668 6.792227013 7.339235369 7.574635724 6.865979405 6.973999019 7.355938546 108799225 phtA Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium sp. MCS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.402758645 8.156884397 7.865551652 8.048291015 8.206618183 8.080681693 8.321374108 8.312289657 148509877 iro virulence Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.912285505 7.666342975 7.751529105 7.260619881 7.738226748 7.689788915 7.61485105 7.370822455 7.756075513 152990658 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Nitratiruptor sp. SB155-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;genus:Nitratiruptor; 7.127424888 7.461484465 7.534605367 7.063591947 7.324201358 7.597783189 163815306 ara Carbon cycling Carbon degradation Hemicellulose Coprococcus eutactus ATCC 27759 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Coprococcus;species:Coprococcus eutactus; 7.442553402 7.535115777 7.657063177 6.927335042 7.087994963 7.263662919 7.173278331 7.285504724 56551103 obgE Stress Radiation stress Zymomonas mobilis subsp. mobilis ZM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Zymomonas;species:Zymomonas mobilis; 7.107664976 7.176456838 7.007170657 6.852010277 7.638556593 81251102 gyrB other category gyrB Nitrosomonas sp. IWT310 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 7.227876453 7.488760037 113529320 nagL Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 8.201754468 8.048728219 7.717733565 7.707959655 8.537012126 8.095047026 8.213987715 8.179516872 8.144843622 134053818 SMR_antibiotics Antibiotic resistance transporter Desulfotomaculum reducens MI-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum reducens; 7.253023162 7.272398953 7.632997097 12513979 TerC Metal Resistance Tellurium Escherichia coli O157:H7 EDL933 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 7.339158048 7.447913695 7.250448288 7.009123635 6.962921631 7.754005247 7.397085823 7.193154919 121716154 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7.178757403 7.353927932 7.400812262 7.484254821 6.484238875 159507392 grpE Stress Heat shock Bacillus megaterium 7.02881167 7.214568516 6.977989759 7.043651242 229362307 cytochrome Energy process Energy process Pseudomonas fluorescens SBW25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.783751748 7.486572471 7.533312132 7.604009853 7.420692068 7.679952828 7.578683539 7.682874184 7.511593273 157374350 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 7.617800007 7.358280855 7.382187838 6.931314541 7.554235011 56963058 cydB Stress Oxygen limitation Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 7.576383611 7.310491906 7.247026083 7.265115163 7.269243635 7.687009653 7.250021075 7.474027887 72527918 DNA_ligase Bacteria phage REPLICATION Coliphage K1F order:Caudovirales;family:Podoviridae;genus:T7-like viruses; 7.105573227 7.459337856 62391506 mdlD Organic Remediation Aromatics Other aromatics Corynebacterium glutamicum ATCC 13032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 8.062505976 8.109040403 7.855654662 7.945106806 8.197378551 8.536916291 8.326048955 7.847142774 8.195683664 91684564 CadA Metal Resistance Cadmium Rhodopseudomonas palustris BisB5 7.541454048 7.780439297 7.650238271 7.414075274 7.534329367 7.784659752 7.567865377 7.85236096 7.646431942 150007328 nrfA Nitrogen Dissimilatory N reduction Parabacteroides distasonis ATCC 8503 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides distasonis; 7.065998967 7.255239035 152976427 nplT Carbon cycling Carbon degradation Starch Bacillus cereus subsp. cytotoxis NVH 391-98 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cytotoxicus; 6.867672286 6.901601443 93355394 sigma_70 Stress Sigma factors Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 7.220262925 7.23239361 7.291633672 6.838881133 7.39182271 262274345 endochitinase Carbon cycling Carbon degradation Chitin Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;species:Grimontia hollisae; 7.811312173 7.454967516 7.48141704 7.292221013 7.154584234 7.543873366 7.57579217 7.291633902 7.804135278 11498112 narI Stress Oxygen limitation Archaeoglobus fulgidus DSM 4304 superkingdom:Archaea;phylum:Euryarchaeota;class:Archaeoglobi;order:Archaeoglobales;family:Archaeoglobaceae;genus:Archaeoglobus;species:Archaeoglobus fulgidus; 7.278777996 7.235758192 7.087900648 7.47334281 171700509 sigma_24 Stress Sigma factors Cyanothece sp. ATCC 51142 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.161620192 7.352698206 3659613 fnr Stress Oxygen stress Gluconacetobacter xylinus 7.37274469 6.994186205 7.26836012 7.06249489 7.550677367 282855684 obgE Stress Radiation stress Pyramidobacter piscolens W5455 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Pyramidobacter;species:Pyramidobacter piscolens; 7.82866977 7.699075405 7.534282357 7.315931166 7.626481155 7.886372833 7.729602104 7.541957237 7.549413366 218751020 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.85892821 8.627275548 8.536264829 8.766352733 8.826883972 14521252 pstA Stress Phosphate limitation Pyrococcus abyssi GE5 7.287203456 6.8429069 7.094963448 6.734188479 6.842855801 119960391 amoA Nitrogen Nitrification superkingdom:Bacteria; 8.434854025 8.402389217 8.420139197 8.229992834 8.581316769 8.630182587 8.6742157 8.74601978 71145613 napA Nitrogen Dissimilatory N reduction Colwellia psychrerythraea 34H superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Colwelliaceae;genus:Colwellia;species:Colwellia psychrerythraea; 7.617874564 7.021689711 7.345559146 7.255693733 7.690909575 110280418 NiR Nitrogen Assimilatory N reduction Cytophaga hutchinsonii ATCC 33406 7.332116552 7.487817031 7.312140222 7.019223738 7.278229758 7.83984108 7.326114751 7.300135993 7.376142205 119475738 pcc Carbon cycling Carbon fixation marine gamma proteobacterium HTCC2143 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.134497268 7.511898869 7.583840263 7.385277128 7.745861573 8.184133487 7.727845622 8.035813362 77379067 mer Metal Resistance Mercury uncultured bacterium superkingdom:Bacteria; 7.144207311 7.292904094 7.54498227 6.922470303 7.28850405 7.511654087 7.339635218 7.59016222 7.125738388 126359361 ChrA Metal Resistance Chromium Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.449396781 7.191922555 7.09461389 6.820982883 7.546974251 7.332601838 7.265249412 7.277413327 11095223 alkK Organic Remediation Others Streptomyces rishiriensis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7.20132386 7.569711924 7.55645177 7.117346099 7.147777831 7.150566531 70985751 glucoamylase Carbon cycling Carbon degradation Starch Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 6.989094981 7.371194956 7.182432993 6.525056957 7.642171545 6.865510634 7.282895594 227548743 obgE Stress Radiation stress Corynebacterium lipophiloflavum DSM 44291 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium lipophiloflavum; 8.038311614 7.781303338 7.537707457 7.750957118 7.718582203 8.035651555 7.743052674 7.645243824 7.599320574 223987780 AceB Carbon cycling Carbon degradation others Providencia rettgeri DSM 1131 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rettgeri; 7.387086993 7.3278257 7.26477883 7.250150905 7.184409931 225199160 AceB Carbon cycling Carbon degradation others Desulfonatronospira thiodismutans ASO3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfonatronospira;species:Desulfonatronospira thiodismutans; 7.094559817 7.259599789 7.302009394 7.011727438 7.067589415 7.5361197 6.898718063 6.901407737 7.395445198 18916607 dehH Organic Remediation Chlorinated solvents Delftia acidovorans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia; 8.682183482 8.702680635 8.674504273 8.261614191 8.41194284 8.513410372 8.616558506 8.520175286 7.988126715 78697798 nmoA Organic Remediation Aromatics Nitoaromatics Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.634557552 7.778789941 7.455956868 7.106326155 7.428770006 7.360049263 7.390713382 7.450857846 187922201 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.520265308 7.630755539 7.933428215 7.966423177 7.514359827 7.850857051 7.965164069 7.992724855 51291709 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.161023337 7.151435097 6.991639506 6.836336803 7.298254737 7.123056725 7.348210882 139003534 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.229726594 7.615624716 7.440137498 7.283326438 7.598166835 146347939 SMR_antibiotics Antibiotic resistance transporter Clostridium kluyveri DSM 555 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium kluyveri; 7.356727483 7.14056302 7.094367202 6.486011708 7.3445287 7.008517117 6.845262417 6.96464786 99030619 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 8.343457806 8.174035561 8.239856183 8.517230036 8.289271918 8.122576387 8.046847387 78184154 amyA Carbon cycling Carbon degradation Starch Synechococcus sp. CC9902 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.592929062 7.655791264 7.767553238 8.205748959 7.752866943 7.696144751 7.724016286 7.911470207 78061121 TerZ Metal Resistance Tellurium Burkholderia sp. 383 7.551910416 7.570874672 7.537569569 7.032480531 7.240940901 7.72806309 7.36321246 7.430402392 7.387524409 56381713 ChrA Metal Resistance Chromium Geobacillus kaustophilus HTA426 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus kaustophilus; 7.604854575 7.714743905 7.479386751 7.453260296 8.112899889 7.981972913 7.994725549 78043933 ppx Phosphorus Phosphorus utilization Carboxydothermus hydrogenoformans Z-2901 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Carboxydothermus;species:Carboxydothermus hydrogenoformans; 7.234953818 7.352362744 7.595685136 7.393369874 7.072261258 7.357066046 7.309568234 7.460213703 116254241 ArsA Metal Resistance Arsenic Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.75188635 7.527943609 7.595589366 7.376711651 7.594948669 8.108595792 7.541000566 7.539185816 7.421046317 57241791 CopA Metal Resistance Copper Campylobacter lari RM2100 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter lari; 7.506668853 7.043305762 7.238117053 6.680643215 6.94761128 7.658112811 7.115084561 6.843080742 7.336342506 66474865 cmuA Organic Remediation Chlorinated solvents uncultured bacterium superkingdom:Bacteria; 7.556803226 7.462613746 8.110711317 8.087861637 8.025240531 7.984406272 7.851116806 7.873838273 8.308072876 169149722 AceA Carbon cycling Carbon degradation others Acinetobacter baumannii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 6.886753542 6.871068849 7.132829073 167957314 pilin virulence pilin candidate division TM7 single-cell isolate TM7c superkingdom:Bacteria; 7.147792328 6.804652692 6.844421139 7.226702171 83635983 pilin virulence pilin Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 7.576798992 7.545420979 7.431900822 7.275815856 7.410842363 7.579150756 7.593925338 7.246593822 7.454917757 85832031 fnr Stress Oxygen stress Leeuwenhoekiella blandensis MED217 6.925597896 7.368272652 6.943999732 71836241 nifH Nitrogen Nitrogen fixation Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 7.593160963 7.710338305 7.945914735 8.18744931 6.813345213 7.42388695 7.702050373 7.731816523 46914803 pilin virulence pilin Photobacterium profundum SS9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 6.900457701 7.143104552 6.702673242 6.752810933 227516146 sigma_70 Stress Sigma factors Atopobium vaginae DSM 15829 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Atopobium;species:Atopobium vaginae; 7.500796434 7.504797179 7.132923224 7.178024966 7.018048738 7.880640293 229335426 pilin virulence pilin Vibrio cholerae 12129(1) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 7.372260567 7.078392225 92394638 TerD Metal Resistance Tellurium Psychrobacter cryohalolentis K5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter cryohalolentis; 8.105992149 8.348652989 8.433669262 8.003473578 8.200176258 8.370739136 8.060104253 7.955442226 168335489 cap virulence capsule Epulopiscium sp. 'N.t. morphotype B' superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Epulopiscium; 7.170948749 7.45106583 167352578 cytochrome Energy process Energy process Shewanella halifaxensis HAW-EB4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella halifaxensis; 7.026299443 7.141672333 7.065907234 7.383572128 6.855577415 7.215183667 1405372 pcpB Organic Remediation Herbicides related compound Sphingobium chlorophenolicum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 7.453336998 7.490173925 7.896482749 7.538374706 7.044122462 7.464697863 7.450622269 7.807391574 23304308 mnp Carbon cycling Carbon degradation Lignin Heterobasidion annosum superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Russulales;family:Bondarzewiaceae;genus:Heterobasidion; 7.350879206 7.58101849 7.22286388 7.487958604 7.518327824 7.582073506 7.430211048 8.057780796 163668236 nitA Organic Remediation Aromatics Other aromatics Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 7.978684688 8.199842521 8.371942476 7.903218747 8.081597507 8.171550577 7.985709615 7.818636029 241869638 katE Stress Oxygen stress Sphingobacterium spiritivorum ATCC 33861 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium;species:Sphingobacterium spiritivorum; 7.996330333 8.260959058 7.773454903 7.230760144 6.878161366 7.594084308 7.974641978 8.232074175 221084858 bclA Organic Remediation Aromatics Aromatic carboxylic acid Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 7.9828664 8.07245494 7.774572542 8.106200297 8.184104796 8.34998005 8.266967599 8.257609907 8.121034036 87281004 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.563962698 7.54360702 7.309379711 7.217246779 7.528825415 7.651476308 7.488251512 7.525687705 78364712 phn Organic Remediation Herbicides related compound Thiomicrospira crunogena XCL-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Thiomicrospira;species:Thiomicrospira crunogena; 7.012385236 6.855048836 66845033 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 7.749340706 7.918709191 7.811136476 7.505719276 8.274251639 7.972399649 8.333504262 8.264185901 8.268952352 21323165 alkK Organic Remediation Others Corynebacterium glutamicum ATCC 13032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 7.976746995 7.382594834 7.380702532 7.50329777 7.32382517 7.542974131 7.346588733 7.451462416 7.519488847 240102613 pstB Stress Phosphate limitation Thermococcus gammatolerans EJ3 7.231811101 7.065158971 7.337073186 7.927660474 7.552763581 8.223601046 40143 sigma_70 Stress Sigma factors Bacillus subtilis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 8.547059715 8.493212483 8.546869493 8.116824462 8.5610837 8.370633659 8.386672755 8.272368996 8.10226345 67854934 TerD Metal Resistance Tellurium Crocosphaera watsonii WH 8501 7.835455572 7.737681561 7.339074193 8.24916083 8.404145372 8.747944086 94502204 gyrB other category gyrB Oceanobacter sp. RED65 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Bermanella; 6.92880789 7.323108847 7.011657695 7.400387603 238749435 MATE_antibiotic Antibiotic resistance transporter Yersinia rohdei ATCC 43380 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia rohdei; 7.717695464 7.315709489 7.353570826 7.440994891 7.862982332 7.575909442 8.071878984 7.353848792 7.813283504 218760330 B_lactamase_C Antibiotic resistance Beta-lactamases Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 7.837764817 7.475871953 7.477999492 7.597996012 7.831786788 7.516187162 7.360500128 7.683404523 7.04261532 224027838 APS_AprA Sulphur adenylylsulfate reductase uncultured alpha proteobacterium 7.439654323 7.55064669 7.198654013 7.610645281 7.728236078 7.873931026 7.807894031 7.64052681 74058496 Van Antibiotic resistance other Enterococcus gallinarum superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus; 7.984095757 7.68963635 7.614034986 7.489934238 7.825474851 7.65994397 7.453276017 7.85250911 77378481 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.022923266 7.411521786 50951891 iro virulence Leifsonia xyli subsp. xyli str. CTCB07 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Leifsonia;species:Leifsonia xyli; 7.541708512 7.541166702 7.684509464 7.622840601 7.849312466 7.954043518 7.547833402 7.564104581 7.658189102 152144700 narG Nitrogen Denitrification Beggiatoa sp. SS superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Beggiatoa; 8.10110511 8.045944387 8.106431476 7.725584939 8.517034776 8.099064826 8.086709151 7.485397036 33438526 DNA_ligase Bacteria phage REPLICATION Enterobacteria phage RB49 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.200943722 6.973816839 76788546 ArsC Metal Resistance Arsenic Streptococcus agalactiae A909 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus agalactiae; 7.058954447 6.918621771 7.328393477 13517051 gyrB other category gyrB marine CFB-group bacterium MBIC04477 superkingdom:Bacteria;phylum:Bacteroidetes; 7.17411649 7.059104388 7.326534409 7.103778386 7.126689114 68266227 oxyR Stress Oxygen stress Azospirillum brasilense superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum; 7.795102079 7.828487177 8.034755744 7.619429003 7.980939897 8.158872088 8.128351271 8.07198706 116224837 exaA Organic Remediation Chlorinated solvents Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 7.437508728 7.168838641 7.370546023 6.910537331 7.194448405 7.732884278 7.123886711 7.326092426 6.903034168 66967805 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.343785311 7.410316173 7.220125973 6.827569527 7.38258288 7.166615115 7.087521028 7.34316213 10640362 glycosyl_transferase_EPS Bioleaching EPS Thermoplasma acidophilum 7.094228685 7.179454406 169809906 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 7.521947044 7.358310776 7.373391395 7.252393953 7.008224509 7.844424884 6.988024187 7.094159392 7.18022618 5231154 exoglucanase Carbon cycling Carbon degradation Cellulose Volvariella volvacea superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pluteaceae;genus:Volvariella; 7.028941685 7.096669149 6.726831035 7.283763524 254984603 pcc Carbon cycling Carbon fixation Geobacter sp. M18 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 7.398836528 8.016060539 7.978481666 7.040412795 7.607478474 7.757486402 7.516931405 7.793341983 7.95258306 227978837 katE Stress Oxygen stress Tsukamurella paurometabola DSM 20162 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 7.318825324 7.004055821 7.866679617 7.2719773 7.047053652 7.06267395 6.872634862 7.173226434 34017124 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.440200435 7.454487553 7.967115977 56692275 nifH Nitrogen Nitrogen fixation Heliobacterium modesticaldum superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Heliobacteriaceae;genus:Heliobacterium; 7.452860679 7.481821187 7.393341647 7.322084496 7.281084127 7.807879023 7.185658223 7.138160362 7.435168146 49525512 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Candida glabrata CBS 138 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Nakaseomyces;species:Candida glabrata; 7.789260305 7.622484618 7.785404752 7.307483761 7.462957577 7.638548218 7.374444789 7.550178891 7.696215208 262282375 pstC Stress Phosphate limitation Streptococcus sp. 2_1_36FAA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 6.876624164 7.768124533 7.46454725 7.63581214 6.941249764 7.265201131 29611174 Tet Antibiotic resistance other Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 9.017631069 8.827393557 8.701129058 8.947323237 8.915419596 8.904748908 9.065377768 8.959104994 8.723418728 197210145 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.223788778 8.090290608 8.158582366 7.770210573 8.21103086 8.141930114 8.117464467 8.264440938 7.893471383 211905629 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.219865325 7.186192531 256592077 sigma_70 Stress Sigma factors Cyanothece sp. PCC 8802 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.229344694 7.229680638 7.015752153 7.641788502 7.336551549 7.013127259 7.22727245 15894985 pstB Stress Phosphate limitation Clostridium acetobutylicum ATCC 824 6.716743734 7.0556575 6.529416083 7.42877405 260778140 pstB Stress Phosphate limitation Vibrio coralliilyticus ATCC BAA-450 7.070159915 6.920775286 254475423 ahpC Stress Oxygen stress Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.918493751 8.108544535 8.175964099 7.694555383 7.905214048 7.991220366 7.944038318 8.340034469 7.976523512 110592574 catB Organic Remediation Aromatics BTEX and related aromatics Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 7.700518548 7.836574094 8.157915021 6.981304743 8.374636969 7.445433515 7.432893121 7.904219946 56696913 alkK Organic Remediation Others Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 7.4911299 7.127136903 7.456240574 7.219556922 6.96793289 6.974307127 6.984616108 7.193660357 13814349 dehH Organic Remediation Chlorinated solvents Sulfolobus solfataricus P2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus;species:Sulfolobus solfataricus; 7.142385577 7.017876334 6.622694916 7.334117625 262257085 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter calcoaceticus; 7.325678134 7.316780844 6.975495028 6.942163938 7.380812989 7.340856729 7.533994632 7.511164391 227069575 nirA Nitrogen Assimilatory N reduction uncultured archaeon 8.095563796 8.115726531 7.749362342 7.606287177 8.171728966 8.113515385 8.00456624 7.788414649 7.715084291 34104794 glucoamylase Carbon cycling Carbon degradation Starch Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 7.900132683 7.943024508 7.615279386 7.539614076 7.664587684 8.010112212 7.834423549 7.682784485 7.729167333 255021906 narI Stress Oxygen limitation Acidithiobacillus caldus ATCC 51756 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 7.032242054 7.100316227 7.036537932 158522293 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Candidatus Desulfococcus oleovorans Hxd3 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus;species:Desulfococcus oleovorans; 7.338976308 7.328490666 7.437575614 7.166978293 7.243095249 7.371092062 7.428745061 7.559966818 224803011 hly virulence hemolysin Opitutaceae bacterium TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 7.639487643 7.848516936 7.470307344 7.474024188 7.809832431 7.905003775 7.506903568 7.418569417 7.30043383 149807582 phoB Stress Phosphate limitation Moritella sp. PE36 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Moritellaceae;genus:Moritella; 7.43570382 7.278607315 7.242589009 7.342223016 7.258632176 7.74412256 7.132897446 7.448091103 7.357090023 117997788 CadA Metal Resistance Cadmium Chloroflexus aggregans DSM 9485 7.268706899 7.553514545 7.688547827 7.520897106 6.946583481 8.036677669 7.185365806 7.241586215 7.388019999 270003614 Tet Antibiotic resistance other Tribolium castaneum superkingdom:Eukaryota;kingdom:Metazoa;phylum:Arthropoda;class:Insecta;order:Coleoptera;family:Tenebrionidae;genus:Tribolium; 7.12352853 7.291273024 7.168601208 6.759817457 6.907123567 7.614865972 251807204 obgE Stress Radiation stress Gallionella ferruginea ES-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Gallionella;species:Gallionella capsiferriformans; 7.162108294 7.137131821 6.935325349 7.554746642 7.204612879 7.33899941 7.169944477 227993794 sigma_24 Stress Sigma factors Meiothermus ruber DSM 1279 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 7.793453235 7.887168522 8.367788586 7.711943702 8.456044638 7.845320506 7.737087851 262402912 amyA Carbon cycling Carbon degradation Starch Vibrio sp. RC586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.662922233 7.816318347 7.778107712 7.710431318 7.259483877 8.035094609 7.639282539 7.588670928 7.42317762 94470911 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.867164231 8.267580084 8.117340068 8.030540939 8.182926721 126135550 exoglucanase Carbon cycling Carbon degradation Cellulose Pichia stipitis CBS 6054 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Scheffersomyces;species:Scheffersomyces stipitis; 7.122219106 6.974905259 7.131045346 6.586266728 7.457714096 7.06785967 6.926562645 7.479755556 15290216 rubisco Carbon cycling Carbon fixation endosymbiont of Pogonophora sp. JT-1 superkingdom:Bacteria; 7.533974743 7.829256054 7.633336353 6.788479534 7.25135177 7.663163831 7.408913755 7.412039066 7.38672313 159892605 sigma_24 Stress Sigma factors Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 7.713811869 7.6519448 7.642989017 7.604358643 7.936595889 7.949248083 7.863844636 7.87527694 7.882341646 121302629 linB Organic Remediation Pesticides related compound Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.220573327 7.854075496 7.356419386 7.941923733 7.986485873 7.953830401 8.158553044 134093713 sigma_70 Stress Sigma factors Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 7.628161387 7.97369023 7.605666373 8.046155498 7.725785944 8.040299428 7.802434261 7.971213533 7.597971828 28804996 gyrB other category gyrB Vibrio parahaemolyticus RIMD 2210633 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.287867837 7.330435257 7.503494127 6.594446439 7.386273945 7.39905598 7.11838976 229380198 sigma_70 Stress Sigma factors Oxalobacter formigenes OXCC13 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Oxalobacter;species:Oxalobacter formigenes; 7.452946915 7.268517406 7.591057559 7.150133603 7.935473984 7.08450623 7.058850012 167945384 ppx Phosphorus Phosphorus utilization Endoriftia persephone 'Hot96_1+Hot96_2' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Endoriftia;species:Endoriftia persephone; 8.050508488 8.033205129 7.98559557 7.724017193 8.074030688 8.165235262 8.046103671 8.093289482 7.56709224 164598150 exoglucanase Carbon cycling Carbon degradation Cellulose Sarcoscypha occidentalis superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Pezizomycetes;order:Pezizales;family:Sarcoscyphaceae;genus:Sarcoscypha; 7.627915344 7.444078594 7.397074483 6.906883373 7.236200105 7.840135295 7.222320047 7.210163884 7.449292656 24349771 pilin virulence pilin Shewanella oneidensis MR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella oneidensis; 7.553469259 7.284789997 7.460584403 7.381373385 6.983764189 7.180039708 7.196724126 7.592109866 37525248 proX Stress Osmotic stress Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 7.848582997 7.829072212 7.812901623 8.016156973 8.08893666 8.019968435 8.278756768 8.226826878 8.217186228 148546135 iro virulence Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.660309096 7.967572819 8.025436846 7.907836915 8.089998398 8.186872836 8.226583255 8.398736379 8.231175408 262272330 obgE Stress Radiation stress Blattabacterium sp. (Blattella germanica) str. Bge superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Blattabacteriaceae;genus:Blattabacterium;species:Blattabacterium sp. (Blattella germanica); 7.46213012 7.159762986 7.13939528 11991219 ara_fungi Carbon cycling Carbon degradation Hemicellulose Cochliobolus carbonum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Cochliobolus; 7.410836175 7.411405533 7.733726467 7.836540646 7.007881476 8.174707981 7.374108522 7.211651119 7.332167455 16331543 pstS Stress Phosphate limitation Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 7.163618109 7.498419389 7.242238994 7.372650109 7.590949175 7.391640717 90415271 mer Metal Resistance Mercury marine gamma proteobacterium HTCC2207 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.678942441 7.423850572 7.13074426 7.143306924 7.021590228 7.351814115 7.126369586 6.90057879 225196438 fnr Stress Oxygen stress Desulfonatronospira thiodismutans ASO3-1 7.507990109 7.521834671 7.770249298 7.471987003 7.64118497 7.796967492 7.138721151 7.481221919 7.292142507 257063543 nrfA Nitrogen Dissimilatory N reduction Slackia heliotrinireducens DSM 20476 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Slackia;species:Slackia heliotrinireducens; 8.259775794 7.861737874 7.745553578 7.746053677 7.985829983 8.053078723 7.957252615 7.516019155 7.854373671 161393221 atzB Organic Remediation Herbicides related compound Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 7.89806785 8.0374419 8.66325611 7.479076201 8.45317098 7.792759864 7.80739637 7.989488376 196191309 pstC Stress Phosphate limitation Synechococcus sp. PCC 7335 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.13911152 8.064967065 7.646378615 7.867551648 8.146716159 8.317302042 8.127995812 7.793075764 7.975394024 220714386 bclA Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.941700875 7.883455536 7.702505167 7.805435465 7.891485885 8.122332983 7.892048663 7.932528167 7.922827103 66391673 T4_type_portal_protein Bacteria phage REPLICATION Enterobacteria phage RB43 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.251238741 7.303592166 6.882898838 7.531225481 7.271229457 6.870639184 7.601526566 41408488 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 8.236649967 8.288299623 8.28465835 7.638196189 8.414613994 8.156257952 7.899695202 8.356933367 60326802 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.172492499 7.181843002 7.24653156 54307933 AceA Carbon cycling Carbon degradation others Photobacterium profundum SS9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 7.955711552 7.608642681 7.521029649 7.457179434 7.516354854 7.499043303 7.815228015 7.572699233 7.440333889 224367370 pstC Stress Phosphate limitation Desulfobacterium autotrophicum HRM2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium;species:Desulfobacterium autotrophicum; 7.656627386 7.650595782 7.671247588 7.344746317 7.361888714 7.914339702 7.235011822 7.438121762 212711364 sigma_38 Stress Sigma factors Providencia alcalifaciens DSM 30120 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 7.189691574 7.485656868 192360482 ahpC Stress Oxygen stress Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 6.858062558 7.546686532 7.143135633 6.814886905 7.664740029 7.080997378 7.459145027 148254105 rubisco Carbon cycling Carbon fixation Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.856003681 8.108679705 7.662116785 7.755022838 7.716244861 7.474103299 7.658823022 7.456295682 7.295254783 213498005 pstB Stress Phosphate limitation Serratia sp. ATCC 39006 7.246161552 7.096798823 6.99780605 6.84837255 7.221188856 254481615 hly virulence hemolysin marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.7876235 7.886096546 7.675460496 7.32724139 7.969320864 7.448081518 7.323474765 7.913641091 241461482 sigma_24 Stress Sigma factors Allochromatium vinosum DSM 180 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 7.298853461 7.384385064 7.168816947 7.123307287 7.062978566 7.885278737 7.091005526 7.250167617 220911153 sigma_24 Stress Sigma factors Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 7.171274796 7.601224771 7.475903723 7.423441754 8.130215107 7.338153272 7.682991162 147668931 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. BAV1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.495421425 7.574575971 7.467252951 7.171187431 7.575776958 7.405153291 7.292380207 7.397163484 115258076 SMR_antibiotics Antibiotic resistance transporter Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.870389268 7.460840881 7.111090562 7.207093968 7.903092245 7.457284215 7.563047788 7.257461555 157845844 oxyR Stress Oxygen stress Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 7.719526779 7.283042228 7.517154255 7.205082075 6.902694604 7.528876202 90297809 pheA Organic Remediation Aromatics Other aromatics Coccidioides immitis RS superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides immitis; 6.907161516 7.349573675 212219307 sigma_70 Stress Sigma factors Coxiella burnetii CbuK_Q154 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Coxiellaceae;genus:Coxiella;species:Coxiella burnetii; 7.591301776 7.851874517 7.530288707 7.499666968 7.577984653 7.893936956 7.881771663 7.651476582 34592259 aclB Carbon cycling Carbon fixation uncultured episymbiont of Alvinella pompejana superkingdom:Bacteria; 6.946137041 7.333144079 6.894572491 89080942 pheA Organic Remediation Aromatics Other aromatics Oceanospirillum sp. MED92 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Neptuniibacter; 7.257123048 7.341312222 7.411216764 7.006271713 6.839062639 7.507311997 7.271660118 7.366949605 14027930 nmoA Organic Remediation Aromatics Nitoaromatics Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 7.078583447 7.312760111 7.24396429 7.03845362 7.278361629 7.847736098 189209507 BpH Organic Remediation Aromatics Aromatic carboxylic acid Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7.242095766 6.842814054 7.174294237 7.002910487 6.821653204 55978091 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.808840154 7.656559434 7.400891259 7.346710329 7.854168622 7.913423591 7.704010289 7.571132936 7.967744942 196192726 ppx Phosphorus Phosphorus utilization Synechococcus sp. PCC 7335 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.209648301 6.874745648 219551265 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.42105266 7.394263179 7.294681769 7.011234918 6.844371874 7.520273654 7.130087349 7.440452406 7.47856503 225570736 clpC Stress Protein stress Clostridium hylemonae DSM 15053 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 7.130305126 7.053210713 6.904861985 189409688 amoA Nitrogen Nitrification superkingdom:Bacteria; 7.456423061 7.676693786 7.663713515 7.548194498 7.221116213 7.494437652 7.192300976 7.450505885 7.488321928 67088289 cbdA Organic Remediation Aromatics Chlorinated aromatics Azotobacter vinelandii AvOP 7.540674759 7.574465694 7.507207618 7.458265819 7.434270163 7.888580247 7.541519066 7.471923504 7.498276661 27349191 B_lactamase_A Antibiotic resistance Beta-lactamases Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.128144636 8.019018605 7.87977787 7.596246466 8.264740678 8.039747943 8.336157957 8.152367303 8.260250532 224606049 rubisco Carbon cycling Carbon fixation Natrialba magadii ATCC 43099 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natrialba;species:Natrialba magadii; 8.171767452 8.272218049 7.898117172 8.164949947 8.675892415 8.370568081 8.237073789 8.255523281 77866099 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 7.599262312 7.634906436 7.496985317 7.252158247 7.425322279 7.550857575 254507430 pilin virulence pilin Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.095088204 7.372077482 6.735075613 7.47492984 152025455 pstA Stress Phosphate limitation Bacillus cytotoxicus NVH 391-98 7.450498651 7.191797791 165976864 napA Nitrogen Dissimilatory N reduction Actinobacillus pleuropneumoniae serovar 3 str. JL03 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus pleuropneumoniae; 6.850005034 6.790369359 7.029412224 7.018453606 7.600220244 261877503 sigma_70 Stress Sigma factors Selenomonas noxia ATCC 43541 7.375926134 7.456575263 7.531787096 6.912694614 7.025774398 7.657455496 110647624 pimF Organic Remediation Aromatics Aromatic carboxylic acid Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 7.75390578 7.767467648 7.628429899 7.450647666 8.071939862 7.643104796 7.682025569 7.730013019 126443959 pcaG Organic Remediation Aromatics Other aromatics Burkholderia pseudomallei 668 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 7.58037877 7.498093977 7.228643781 7.59092929 7.75366017 7.697721915 7.786559485 72163142 pstB Stress Phosphate limitation Thermobifida fusca YX 7.354029483 7.70028166 7.821996381 7.776230759 8.353140623 7.88672776 8.039843703 8.006145765 8.047701449 90335637 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 7.990687704 7.702698801 7.381429371 7.313869597 7.304550659 7.909328729 7.555524239 7.426747334 7.703505934 194682506 SMR_antibiotics Antibiotic resistance transporter Proteus mirabilis HI4320 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 7.407531721 7.16798175 153012045 CadA Metal Resistance Cadmium Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 6.919959222 7.15181537 6.901878373 7.446070108 6.898840252 7.121370212 170726605 exaA Organic Remediation Chlorinated solvents Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 7.669599315 7.543521647 7.256021449 7.183565472 7.363288006 7.661516304 90417323 narI Stress Oxygen limitation marine gamma proteobacterium HTCC2207 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.649955549 7.459826308 7.635058483 148324013 pulA Carbon cycling Carbon degradation Starch Fusobacterium nucleatum subsp. polymorphum ATCC 10953 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteria;order:Fusobacteriales;family:Fusobacteriaceae;genus:Fusobacterium;species:Fusobacterium nucleatum; 8.192339851 8.002048778 7.815843617 7.508382604 7.413692199 8.150360501 7.75964082 7.49743704 8.156960564 125974678 endoglucanase Carbon cycling Carbon degradation Cellulose Clostridium thermocellum ATCC 27405 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 7.461742243 7.277301927 7.817902925 7.400358051 7.104360245 7.656445853 7.264238664 7.195494084 118424358 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.151848611 7.758510962 7.573185158 7.435773038 7.637800449 7.784256358 7.858704852 7.412097885 134097027 clpC Stress Protein stress Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 7.559573262 7.660236985 8.095575531 8.2637807 7.822921942 7.957452819 7.752557252 7.969049957 189500624 phoB Stress Phosphate limitation Chlorobium phaeobacteroides BS1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 7.569167325 7.667357718 7.822962448 7.52138856 7.224231215 7.69066039 7.320074525 7.282997746 7.628792384 156045730 katE Stress Oxygen stress Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 7.214856183 7.036665381 7.236631445 6.996713339 7.356998502 7.124212997 7.186146527 7.453113257 198248723 glucoamylase Carbon cycling Carbon degradation Starch Acidithiobacillus ferrooxidans ATCC 53993 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 7.413129103 7.297097757 7.52928816 6.976773236 7.416247671 7.232647044 7.485557989 86169573 gyrB other category gyrB Leuconostoc pseudoficulneum superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Fructobacillus; 7.132690948 7.056732005 46203957 ArsC Metal Resistance Arsenic Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 8.304957933 8.453719216 8.124464322 8.194838826 8.86024159 8.83843009 8.773311864 9.008351367 28868363 alkK Organic Remediation Others Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 7.795910386 7.851118255 7.682051465 7.49701538 7.7512126 7.857646812 7.517197005 7.549183434 7.497222107 2982669 gdh Nitrogen Ammonification Thermococcus kodakarensis KOD1 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus kodakarensis; 8.143532915 8.328824666 8.235291351 8.014127907 8.315599698 8.14514575 8.387939895 8.304111843 8.074682057 70930922 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.182519024 7.702893899 7.718496831 7.482004481 7.165853969 7.765683453 239909818 pstA Stress Phosphate limitation Thermococcus gammatolerans EJ3 7.789193968 7.322957238 7.53726585 7.549692705 7.352758573 7.428080606 7.23692174 7.446203579 256580827 phoA Stress Phosphate limitation Capnocytophaga ochracea DSM 7271 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga ochracea; 7.216880129 7.104540088 4098454 nifH Nitrogen Nitrogen fixation Gluconacetobacter diazotrophicus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter; 7.91076896 7.952178257 7.5405078 7.76892507 8.084151077 8.099943123 7.803144982 7.738359497 8.003761637 67776009 CODH Carbon cycling Carbon fixation Chlorobium phaeobacteroides DSM 266 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 7.109788204 7.230431874 7.087058048 7.432783448 7.308354546 7.062974088 219965754 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.493771932 7.427339092 7.272933481 7.049725404 7.586893411 7.694393974 7.343372351 7.435226662 66840867 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7.230017527 6.958794914 7.178661655 7.314675509 7.169841211 7.136723652 7.244323635 7.037055101 88856669 czcD Metal Resistance "Cadmium,Cobalt,Zinc" marine actinobacterium PHSC20C1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 7.629145347 7.682804321 7.984622003 7.87229927 7.657057239 8.269670305 7.922159077 7.713980899 7.702810389 269125851 sigma_70 Stress Sigma factors Thermomonospora curvata DSM 43183 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora;species:Thermomonospora curvata; 7.259572893 7.862596893 33567939 CorC Metal Resistance Cobalt Bordetella bronchiseptica RB50 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella bronchiseptica; 7.609419693 7.229454454 6.998950298 7.363934553 7.174764376 7.744272243 7.156678976 7.104366433 68542133 endochitinase Carbon cycling Carbon degradation Chitin Shewanella baltica OS155 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 7.404378375 7.534183497 7.34090379 7.040452325 7.192229083 7.83302712 7.416041466 7.09306915 149771166 gyrB other category gyrB Flavobacterium psychrophilum JIP02/86 7.496682225 6.9883519 161611323 obgE Stress Radiation stress Bdellovibrio bacteriovorus HD100 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 7.871080346 8.281161965 7.628996934 7.911855039 8.221098715 7.968439328 8.049319834 7.823649747 7.608267091 113733344 CusF Metal Resistance Copper Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 7.609219915 7.358081531 7.443663756 7.536970154 7.533980052 8.043977978 7.578525156 7.607126462 7.752363136 126105489 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.225029672 7.209588098 150835317 ahpC Stress Oxygen stress Marinomonas sp. MWYL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 7.096652345 7.077270545 6.54925274 7.479842326 7.007137283 6.956529972 119882220 endochitinase Carbon cycling Carbon degradation Chitin Salinispora arenicola CNS205 7.782532837 7.920420496 8.094223904 7.529432833 7.875251339 8.124584903 7.758114861 7.832342933 7.763536766 14389215 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.174048585 8.092913669 7.758377612 7.818698667 8.30577825 8.122130403 8.044957986 7.9073245 8.055312181 215260995 amoA Nitrogen Nitrification superkingdom:Bacteria; 7.693012046 7.637676146 7.761558845 7.10954427 7.21459575 7.304171103 7.677263429 194540315 ppx Phosphorus Phosphorus utilization Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.185839044 7.098808547 7.157600481 133912675 pcaG Organic Remediation Aromatics Other aromatics Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 7.567956092 7.854102418 7.904501152 7.686981852 7.775327916 7.909318956 7.253183389 7.604749049 182413917 sigma_24 Stress Sigma factors Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 8.229909742 8.028584089 149752407 ChrA Metal Resistance Chromium Dorea longicatena DSM 13814 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Dorea;species:Dorea longicatena; 7.743557834 7.538495538 7.806112384 8.147241884 8.003841873 7.688162412 8.002755768 161330264 sigma_38 Stress Sigma factors Shewanella benthica KT99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella benthica; 7.211559601 7.264591196 7.049827237 6.752297103 7.526503532 118049515 vanA Carbon cycling Carbon degradation Others Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 6.997707061 7.182745743 6.627255132 7.405020859 28864395 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.669091399 7.624465653 7.834457697 7.164934438 7.713065795 7.817539769 7.658536272 8.283335055 7.772314507 60493579 ppx Phosphorus Phosphorus utilization Bacteroides fragilis NCTC 9343 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 7.523921375 7.724968007 7.759288819 7.185816919 7.637808238 7.744465957 7.890471703 88923945 gyrB other category gyrB Desulfotomaculum reducens MI-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum reducens; 7.261877023 6.979603033 6.89285082 6.64612236 7.649720996 15023802 clpC Stress Protein stress Clostridium acetobutylicum ATCC 824 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium acetobutylicum; 7.389753838 7.565577965 7.407936 6.975027011 6.84596945 82716347 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.428238573 7.215904361 7.851125795 7.95777981 7.313586667 6.99258783 7.556770685 7.970676338 84385024 ZntA Metal Resistance Zinc Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 7.268885411 7.400296878 7.332385708 7.509674491 6.906202758 7.98840144 7.375348408 7.431918654 7.56567157 1255669 bphA Organic Remediation Aromatics Polycyclic aromatics Pseudomonas aeruginosa 7.113489297 7.668867928 7.561528428 7.353136734 7.555813725 7.590698655 7.430246825 7.339505304 7.599972297 114332295 hao Nitrogen Nitrification Nitrosomonas eutropha C91 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas eutropha; 7.151919882 7.171361765 7.240709237 7.252265981 7.798091927 7.141969155 7.089290313 165877209 dmsA Organic Remediation Others Actinobacillus pleuropneumoniae serovar 3 str. JL03 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus pleuropneumoniae; 7.504347074 7.711373477 7.355876832 7.269024169 7.662257107 7.58840153 7.552439986 7.538090496 7.644905343 89473860 nifH Nitrogen Nitrogen fixation uncultured cyanobacterium superkingdom:Bacteria;phylum:Cyanobacteria; 7.343159247 7.098430897 6.924781735 7.085095133 6.792378814 7.347663512 73991333 mdlB Organic Remediation Aromatics Aromatic carboxylic acid Canis familiaris 7.234890852 7.039984518 7.070551417 85830155 fnr Stress Oxygen stress Leeuwenhoekiella blandensis MED217 6.993299417 6.960206618 7.1075841 6.586201281 7.381297904 7.159220962 7.388326017 119898063 cydB Stress Oxygen limitation Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 7.107347416 7.437410452 7.781527598 7.47860853 7.320563102 7.488584062 224823083 pstB Stress Phosphate limitation Natrialba magadii ATCC 43099 7.532671851 7.52738562 7.771842606 7.731213322 8.10591287 7.743451398 7.644198392 7.496086941 266619433 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Clostridium hathewayi DSM 13479 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 7.187654385 7.211562442 6.329687461 7.700778514 6.744979866 6.802492099 7.270743534 109452434 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.354578952 6.777700319 7.034865188 6.812773338 7.271351245 154498020 fnr Stress Oxygen stress Bacteroides capillosus ATCC 29799 7.18766316 7.163760387 7.364818699 7.409328722 7.275401612 7.71117082 7.451435219 7.350492106 7.284106416 56692267 proO Organic Remediation Aromatics Other aromatics Sphingomonas paucimobilis superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.0430076 7.739329343 7.766739355 7.690554943 8.296034553 7.829812002 8.127397791 7.875970146 8.200849106 212009066 atzA Organic Remediation Herbicides related compound Thermococcus onnurineus NA1 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus onnurineus; 7.373801617 7.27508859 7.139935028 6.851813725 7.087287294 7.338002679 7.15396294 7.061047817 115254344 nmoA Organic Remediation Aromatics Nitoaromatics Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.473295638 8.369923428 8.264259293 8.011495911 8.415252078 8.366929247 8.282708027 8.413470307 8.347614189 90408966 TehB Metal Resistance Tellurium Psychromonas sp. CNPT3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas; 7.515918837 7.182754687 7.204028405 7.084173589 7.541815095 116123656 phoB Stress Phosphate limitation Leptospira borgpetersenii serovar Hardjo-bovis JB197 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira borgpetersenii; 7.144464509 6.958912076 7.303438364 90413891 nitA Organic Remediation Aromatics Other aromatics Photobacterium profundum 3TCK superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 7.90034739 7.580275286 7.628381723 7.636280309 7.723176289 7.774995828 7.768012643 7.624878282 7.471189808 159900839 CopA Metal Resistance Copper Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 7.545324016 7.531824148 6.907931301 6.901805344 7.335881311 7.036747834 7.105298332 7.400167374 118570036 bphF1 Organic Remediation Aromatics Polycyclic aromatics Mycobacterium ulcerans Agy99 7.491667143 7.552218894 7.460959869 7.346692859 7.45835332 7.576142509 7.792459882 7.570020435 7.617220445 28270180 ppx Phosphorus Phosphorus utilization Lactobacillus plantarum WCFS1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus plantarum; 7.752874723 7.768234694 7.622398087 6.977337765 6.620138061 7.643950522 7.365936384 7.183565835 7.702834995 160914920 ChrA Metal Resistance Chromium Eubacterium dolichum DSM 3991 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichi;order:Erysipelotrichales;family:Erysipelotrichaceae;species:Eubacterium dolichum; 7.610267869 7.307706841 7.478076541 7.011451807 7.746626013 17431367 akbF Organic Remediation Aromatics BTEX and related aromatics Ralstonia solanacearum 7.39543822 7.572423513 7.73892154 7.878140658 7.397691749 8.077686936 7.680181616 7.745312647 7.886120224 118068797 pmdAB Organic Remediation Aromatics Others Serratia proteamaculans 568 7.806819105 7.661433822 7.561222088 7.334408391 7.079462832 7.901522993 7.489428948 7.206456724 7.53106842 158141386 CadA Metal Resistance Cadmium Alkaliphilus oremlandii OhILAs 6.988079103 7.16219057 68342552 proX Stress Osmotic stress Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.501587418 7.333621526 7.346828338 7.281002335 7.539953301 7.660883631 7.709962557 7.661225 7.797422908 59712218 pstC Stress Phosphate limitation Vibrio fischeri ES114 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Vibrio fischeri; 7.165243738 7.071993293 7.393848733 92431362 pcaG Organic Remediation Aromatics Other aromatics Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.225450468 7.937306843 7.316625669 7.846511692 7.905083119 8.20735548 7.763481156 7.625144388 257780396 APS_AprB Sulphur adenylylsulfate reductase Desulfotomaculum acetoxidans DSM 771 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum acetoxidans; 7.885219319 8.011017236 7.65504697 7.0887729 7.834431632 7.665071849 7.653332198 8.022734245 90577568 dmsA Organic Remediation Others Vibrio angustum S14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium angustum; 7.522507213 6.893775689 6.846557084 38569315 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. FL2 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.382852044 7.285453628 7.327290508 7.324773038 7.255277593 7.511921572 42552315 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 7.450340733 7.562356061 7.140598913 7.708908084 148370515 ureC Nitrogen Ammonification Brucella ovis ATCC 25840 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Brucella;species:Brucella ovis; 7.676966804 7.140708531 7.223767409 7.188685001 6.78377565 7.425812103 7.254121481 7.138814282 49530849 PobA Organic Remediation Aromatics Aromatic carboxylic acid Acinetobacter sp. ADP1 6.930385539 7.530275539 52349838 proV Stress Osmotic stress Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 7.184200998 7.53469288 7.229921262 6.841349374 7.694478888 214044874 sox Sulphur Sulphur oxidation Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.856971663 7.960991218 7.68973559 7.695862041 7.757291013 8.151400827 7.782716414 7.844009333 20501975 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.459067318 7.260993663 7.338103152 7.396381003 7.676335935 7.629199299 7.298421551 1673950 obgE Stress Radiation stress Mycoplasma pneumoniae M129 superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Mycoplasmatales;family:Mycoplasmataceae;genus:Mycoplasma;species:Mycoplasma pneumoniae; 7.354034305 7.116666319 7.488450884 226227773 pstA Stress Phosphate limitation Gemmatimonas aurantiaca T-27 8.101850705 8.219201729 8.207586827 8.308150027 8.207562103 8.402527337 8.830293616 8.813212805 8.159885439 77409120 pstB Stress Phosphate limitation Streptococcus agalactiae COH1 6.967881357 7.01360029 222081274 fnr Stress Oxygen stress Agrobacterium radiobacter K84 7.981573734 7.866156062 7.737795102 7.901266534 7.873831259 7.878181809 8.308778864 118444604 dnaK Stress Heat shock Clostridium novyi NT 7.093430992 7.485044677 7.043275825 222100717 gyrB other category gyrB Thermotoga neapolitana DSM 4359 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga;species:Thermotoga neapolitana; 7.148822329 7.729931764 7.439998342 7.310901428 7.57515969 7.795098353 154174068 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Campylobacter curvus 525.92 8.002117126 7.869906933 8.223420368 7.653160962 8.231538692 7.980372638 8.016769523 7.962962553 8.033417894 161167397 sigma_24 Stress Sigma factors Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 7.40951337 7.08161742 7.553342036 7.257683923 7.019911205 7.771684926 7.374594188 7.204879077 7.439917134 49530591 benD Organic Remediation Aromatics Aromatic carboxylic acid Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 7.253962729 7.672162845 142112 sigma_70 Stress Sigma factors Nostoc sp. PCC 7120 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc; 7.581744801 7.1915923 7.505624174 7.242123683 6.94885095 7.714012093 7.463775853 7.343859849 7.428040005 56313813 glnA Stress Nitrogen limitation Aromatoleum aromaticum EbN1 7.904465325 8.071064544 7.99532523 7.561297498 7.771049483 7.679339099 7.927567016 196193132 phdCI Organic Remediation Aromatics Polycyclic aromatics Alcanivorax sp. DG881 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 7.58968515 7.281978005 7.881767228 7.072615236 7.178217789 7.617214076 7.302719565 7.382462565 7.327469048 55978103 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.451315712 8.347587379 7.868043118 8.279583904 8.020189796 8.228124361 8.112190824 7.917663905 7.94483447 45686322 tape_measure_protein Bacteria phage STRUCTURAL Enterobacteria phage T1 order:Caudovirales;family:Siphoviridae;genus:T1-like viruses; 7.548305123 7.213106586 7.262558973 7.272284647 6.879050202 7.716326841 7.193528254 7.170809581 7.386026268 85837531 pulA Carbon cycling Carbon degradation Starch Vibrio sp. MED222 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.277633353 7.26147821 6.858135089 7.422530817 168994236 MFS_antibiotic Antibiotic resistance transporter Lysinibacillus sphaericus C3-41 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Lysinibacillus;species:Lysinibacillus sphaericus; 6.909563428 7.255341255 170016787 ahpF Stress Oxygen stress Leuconostoc citreum KM20 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc citreum; 7.243751114 6.816144575 7.025510549 126347791 sigma_24 Stress Sigma factors Streptomyces ambofaciens ATCC 23877 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ambofaciens; 7.490564053 7.352340083 7.374109969 7.031911971 7.8800856 152067462 sigma_32 Stress Sigma factors Beggiatoa sp. PS superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Beggiatoa; 7.387921329 7.235319302 161384402 pimF Organic Remediation Aromatics Aromatic carboxylic acid Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 7.39005243 7.62266935 7.431054033 7.119996836 7.180585075 7.394811756 7.486681172 189191278 cah Organic Remediation Others Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7.380311212 7.40116729 7.536998602 7.305149816 7.690974703 7.659510736 7.754933285 7.2171576 7.633415767 209546620 nmoA Organic Remediation Aromatics Nitoaromatics Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.140376873 8.082186009 7.779902053 8.158437452 8.010080794 8.238987238 7.851044885 7.9005643 22450180 gyrB other category gyrB Shewanella sairae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 7.170248173 6.920818353 7.762218488 7.400141558 7.399094109 225519943 sigma_70 Stress Sigma factors 'Nostoc azollae' 0708 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena azollae; 7.59127104 7.333812858 7.163670588 7.069255332 6.904010524 7.541140309 6.810714744 6.835120062 7.2062965 226939451 pstA Stress Phosphate limitation Laribacter hongkongensis HLHK9 8.540608756 7.70230957 7.585567642 7.846490841 8.193889172 91201838 nirS Nitrogen Denitrification Candidatus Kuenenia stuttgartiensis superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;genus:Candidatus Kuenenia; 7.245628016 7.087247043 6.80592874 6.623070365 7.469062895 221184109 bphF1 Organic Remediation Aromatics Polycyclic aromatics Burkholderia multivorans CGD2M 7.700352812 7.70928346 7.880229646 7.648504701 7.887668443 7.904594153 7.958344947 7.897208059 7.918730058 78518981 CODH Carbon cycling Carbon fixation Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.381465719 7.392071019 7.377522772 7.47019785 7.194006169 7.333084731 7.310944576 7.6658656 121605701 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 7.296246118 7.079832093 7.104600648 7.212711055 214044410 nagI Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.705602739 8.000881845 7.732274115 7.73087637 7.326530397 7.611536265 7.560939147 7.501113574 7.477303527 115361285 nhh Organic Remediation Aromatics Nitoaromatics Burkholderia cepacia AMMD superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 7.333883934 7.317730125 7.191850805 7.169462449 7.308889132 6.917337182 7.3163442 216906005 helicase_family_4_DnaB_like Bacteria phage REPLICATION Bacillus phage TP21-L order:Caudovirales;family:Siphoviridae; 6.969872407 6.956993361 6.932453355 260424480 iro virulence Cronobacter turicensis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter; 7.732595008 7.699662562 7.773384862 7.758330435 7.825525859 7.982338673 8.130777122 8.02855507 7.992630114 133912042 mhpA Organic Remediation Aromatics Aromatic carboxylic acid Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 7.459995651 7.409145763 7.336939501 7.182205341 194476842 Al Metal Resistance Aluminum Paulinella chromatophora superkingdom:Eukaryota;order:Euglyphida;family:Paulinellidae;genus:Paulinella; 7.355211919 7.196334948 7.159159189 69283930 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 7.621175017 7.559554168 7.338470756 7.397036158 7.515575308 7.83839457 7.548342138 7.292932947 7.868430911 91201982 czcC Metal Resistance "Cadmium,Cobalt,Zinc" Candidatus Kuenenia stuttgartiensis superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;genus:Candidatus Kuenenia; 7.647440702 7.595767607 7.183734149 7.474290728 7.691741224 8.010213379 7.813577539 7.746611899 7.739466818 156532011 tutFDG Organic Remediation Aromatics BTEX and related aromatics Enterobacter sakazakii ATCC BAA-894 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 8.067573572 8.175473636 7.820230278 8.120905118 8.132015128 8.396918587 8.128020429 8.291915653 7.956819016 46401878 major_capsid_protein Bacteria phage STRUCTURAL Enterobacteria phage T5 order:Caudovirales;family:Siphoviridae;genus:T5-like viruses; 6.601120497 7.23900884 33592293 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Bordetella pertussis Tohama I superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella pertussis; 7.930413047 7.798612813 7.395607741 7.615649839 8.056533469 8.245692753 7.943332201 7.958272555 7.895615318 269935200 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Mobiluncus mulieris 28-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus mulieris; 6.478194907 7.20529767 85109855 amyA Carbon cycling Carbon degradation Starch Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 7.580326752 7.673846514 7.767584543 227980014 AceB Carbon cycling Carbon degradation others Tsukamurella paurometabola DSM 20162 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 7.012192447 6.993689679 7.315149478 7.423172381 6.688313828 6.931326724 7.099390768 168993000 gyrB other category gyrB Lysinibacillus sphaericus C3-41 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Lysinibacillus;species:Lysinibacillus sphaericus; 6.955860376 7.216280362 7.002704691 6.984502765 6.738233792 159904371 ppk Phosphorus Phosphorus utilization Prochlorococcus marinus str. MIT 9211 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 7.282463522 7.129664557 242224959 clpC Stress Protein stress Clostridium cellulovorans 743B superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium cellulovorans; 7.595174543 7.590974636 7.598186756 7.405031962 7.627954612 8.041770786 7.925742856 7.582655095 7.677442243 260939328 sigma_70 Stress Sigma factors Vibrio orientalis CIP 102891 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 7.252595511 7.244750529 7.504291325 6.935870698 7.160592172 7.511780269 7.471562679 7.795870844 225181810 katE Stress Oxygen stress Dethiobacter alkaliphilus AHT 1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Syntrophomonadaceae;genus:Dethiobacter;species:Dethiobacter alkaliphilus; 7.764942239 7.714907344 7.454536521 7.512337212 7.586815687 7.72966612 7.968126508 7.346130521 7.620099798 79075659 aoxB Metal Resistance Arsenic Agrobacterium tumefaciens superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 7.755156453 7.818437299 7.899039479 7.685016151 7.996806453 8.060169479 8.1066396 7.871220094 7.976974789 84689354 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Parvularcula bermudensis HTCC2503 7.351480891 7.287834511 7.483057871 6.984338559 7.236214653 7.651266754 7.19678663 7.697206087 149950738 sigma_24 Stress Sigma factors Alkaliphilus metalliredigens QYMF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus metalliredigens; 6.90084668 7.095393752 7.017005058 7.387835634 57020411 CopA Metal Resistance Copper Campylobacter coli RM2228 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter coli; 8.059222933 7.748367026 8.39930448 8.021024956 218172657 pcaG Organic Remediation Aromatics Other aromatics Cyanothece sp. PCC 7424 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 6.722273218 6.918966401 6.366925454 7.284231391 6.966877822 7.06280718 260587272 srt virulence surface protein Blautia hansenii DSM 20583 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Blautia;species:Blautia hansenii; 7.471536897 7.25724674 7.30362877 7.165355231 7.389909513 6.951395359 7.222698891 7.453789492 152961212 CopA Metal Resistance Copper Yersinia pseudotuberculosis IP 31758 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia pseudotuberculosis; 7.144479824 7.36636096 126739189 inv virulence invasion Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.495975421 7.575065323 7.238321729 7.393678987 261500119 amoA Nitrogen Nitrification superkingdom:Archaea; 7.266046145 6.905390374 7.273486792 6.796404722 7.106168078 7.375264491 229557387 vip virulence virulence protein Listeria grayi DSM 20601 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria grayi; 7.792396298 7.829102787 7.787379646 7.848783734 7.715586828 7.973460955 7.855703039 7.986020039 7.82426441 168085926 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.913300575 7.536090243 7.477819506 7.40069458 7.167697148 7.972117097 7.529620754 7.296273164 7.438470661 161503491 type_III_secretion virulence secretion "Salmonella enterica subsp. arizonae serovar 62:z4,z23:--" 7.14889709 7.464083446 7.742195607 7.055963042 8.156945801 7.105314754 7.146017723 7.6031189 117649764 katE Stress Oxygen stress Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 7.690260254 7.566055897 7.762117855 7.622553431 7.886059109 7.901028634 7.856529185 7.812559981 7.451899674 86283084 fnr Stress Oxygen stress Rhizobium etli CFN 42 6.978189106 7.594255614 50057029 integrase_tyrosine Bacteria phage REPLICATION Oenoccocus oeni bacteriophage fOgPSU1 order:Caudovirales;family:Siphoviridae; 7.220831616 7.066610236 7.295190498 7.012658912 6.816496908 123987956 ahpC Stress Oxygen stress Microscilla marina ATCC 23134 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Microscilla;species:Microscilla marina; 7.139127129 6.71254709 6.807056631 7.387889893 157164653 sigma_70 Stress Sigma factors Campylobacter concisus 13826 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter concisus; 7.422075511 7.473050094 7.450014799 7.535081508 7.115702583 7.824721173 7.122320884 7.16390496 7.623992316 251848602 dsrA Sulphur sulfite reductase Ruminococcus sp. 5_1_39B_FAA 7.488061545 7.361682154 7.281017468 7.038362344 7.035355055 7.291307714 7.254283506 7.431622175 7.644835641 192359201 atzA Organic Remediation Herbicides related compound Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 7.129043977 7.623445106 7.797547968 8.150363787 7.473254078 8.304740542 7.5763937 7.520351976 7.586579902 118602694 rubisco Carbon cycling Carbon fixation Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:Candidatus Ruthia magnifica; 7.119274278 7.151724279 154505763 CopA Metal Resistance Copper Ruminococcus gnavus ATCC 29149 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus gnavus; 7.241437905 7.345555852 257878320 ahpC Stress Oxygen stress "Enterococcus faecium 1,230,933" superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus faecium; 6.784748296 6.968914478 37519942 amyA Carbon cycling Carbon degradation Starch Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 7.941808621 7.972517151 7.853296189 7.768470744 7.64489013 7.912597749 7.410161721 7.251189826 7.367684986 157377418 cytochrome Energy process Energy process Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 7.100318971 7.008820252 6.590498574 7.334166278 3219626 amyA Carbon cycling Carbon degradation Starch Streptomyces lividans superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7.792832806 7.887609685 7.948020793 7.813933502 7.988283884 7.990982716 8.186978671 8.081183666 7.92998624 258626644 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 7.01800317 6.699434988 33385671 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.753831527 7.343942676 7.600753886 7.53723005 7.193224127 7.343133405 7.613933984 7.78632249 45386243 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 7.736708351 8.00035258 8.137445611 8.384624896 7.983147114 7.975622676 8.076262243 8.021803412 8.27202226 213954920 ppk Phosphorus Phosphorus utilization Capnocytophaga sputigena Capno superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga sputigena; 7.043254243 7.301238976 7.006907545 6.98345059 6.823361645 222440339 sox Sulphur Sulphur oxidation Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 8.318053085 8.313090194 8.245775178 7.799614987 7.947758171 7.997268352 8.23016482 8.192021108 7.67744317 261500196 amoA Nitrogen Nitrification superkingdom:Bacteria; 7.251374338 7.4867469 7.511315028 7.182913208 6.59656325 7.636264008 6.997620937 7.133280875 153185 B_lactamase_A Antibiotic resistance Beta-lactamases superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7.514554832 7.218996698 7.594171953 17385460 narG Nitrogen Denitrification Pseudomonas sp. Lgg10.5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.520155132 7.792517575 8.128750121 8.091581065 7.904660429 7.936511568 8.191411 8.055481814 126740693 glnA Stress Nitrogen limitation Roseobacter sp. SK209-2-6 7.595648551 7.644737453 7.520876513 7.12257904 7.498851311 7.908288783 7.705749764 7.556590426 7.77678153 224953103 ppk Phosphorus Phosphorus utilization Neisseria flavescens NRL30031/H210 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria flavescens; 8.313857543 8.205853902 8.032225371 8.161048052 8.095806821 7.987595588 7.834423549 7.815675019 7.615323916 167072369 Catechol Organic Remediation Aromatics Other aromatics Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.714186204 7.76326576 8.261338409 7.747415679 8.357848525 8.125823679 8.073153517 8.170436197 72388561 gyrB other category gyrB Psychrobacter pacificensis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 7.287920048 7.524261953 7.22399735 7.37826985 7.711687351 7.839414647 7.927407492 7.402424118 7.434776823 124294899 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 7.25519034 7.108277192 6.697567153 7.52144874 116103011 sigma_70 Stress Sigma factors Pediococcus pentosaceus ATCC 25745 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Pediococcus;species:Pediococcus pentosaceus; 7.306348995 7.619788296 7.381748572 6.95282158 7.062992406 7.863874126 7.656002421 7.395756161 157285648 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.57086421 7.552841158 7.664319695 7.576727491 7.171212219 8.130349598 7.203992953 7.338514957 7.538272582 169605003 nagG Organic Remediation Aromatics Aromatic carboxylic acid Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 7.218399136 7.359048774 7.208567768 6.886767091 196185264 MFS_antibiotic Antibiotic resistance transporter Brevundimonas sp. BAL3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas; 7.861484395 7.958158463 8.022962421 7.851478211 8.043659632 7.689627043 7.710267565 7.854664682 13358818 gyrB other category gyrB Flavobacterium ferrugineum superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;genus:Terrimonas; 7.843504636 7.634902266 7.165178826 7.544714 7.629066116 7.376367012 7.420613652 76875211 amyA Carbon cycling Carbon degradation Starch Pseudoalteromonas haloplanktis TAC125 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas haloplanktis; 7.247499287 7.244032329 7.613662771 7.400269771 7.045339528 7.048719287 6.894508824 34333270 contractile_tail_sheath_protein Bacteria phage STRUCTURAL Vibrio phage KVP40 order:Caudovirales;family:Myoviridae;genus:T4-like viruses;species:Vibrio phage nt-1 sensu lato; 7.699053885 7.57673766 7.5177596 7.645935362 7.439337341 7.404169743 7.435157815 7.31076613 7.357809062 28872361 ppx Phosphorus Phosphorus utilization Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 7.684097852 7.727774285 7.789005733 7.219504036 7.891226408 8.027784428 8.052879927 8.122481772 156936368 CopA Metal Resistance Copper Enterobacter sakazakii ATCC BAA-894 7.481170934 7.821072276 7.828553442 7.779261307 7.833341117 7.933585715 7.486854989 7.607759302 7.777531063 240250666 clpC Stress Protein stress Bifidobacterium animalis subsp. lactis DSM 10140 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 8.030870757 7.999742037 8.321404848 7.61859365 8.271351388 7.787746491 7.888257868 8.141334929 157100694 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7.242461669 7.239047326 39976129 ara_fungi Carbon cycling Carbon degradation Hemicellulose Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 8.916590873 8.739243174 8.166487469 8.468370164 8.396965831 8.563057818 8.396715188 8.583894768 206570464 ArsA Metal Resistance Arsenic Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 6.893529741 7.124308541 6.954174453 7.063012194 7.433382458 196156442 arcB Stress Oxygen limitation Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 7.365950393 7.487390541 7.296765648 7.276884 7.644673919 7.754230853 7.672186668 7.659731175 7.951655849 23867874 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 7.02444387 7.011996552 7.34109924 7.200850651 7.873583679 6.92222927 7.114287879 154247909 CadA Metal Resistance Cadmium Xanthobacter autotrophicus Py2 7.478984516 7.406190109 7.468563347 7.283659927 7.557244707 7.552217836 7.389950038 7.554861786 7.744547645 118074941 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 7.38596224 7.041831318 7.263435657 6.702619571 7.292445002 7.197040569 7.025180949 7.369026485 255930151 phytase Phosphorus Phosphorus utilization Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 7.210816772 6.850958523 6.765320308 7.404860321 192758068 gyrB other category gyrB Eggerthella lenta superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Eggerthella; 7.148242045 7.422729642 7.561230505 7.09467075 7.027498359 7.72475484 7.221913975 7.380037127 7.405036727 95115945 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.107132531 7.267813183 7.096878203 6.937121114 7.439948526 7.581648926 172036138 NiR Nitrogen Assimilatory N reduction Cyanothece sp. ATCC 51142 8.729952282 8.835304949 8.942426696 8.569259046 9.338017875 139002968 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.171057053 6.986484294 112214149 alkB Organic Remediation Other Hydrocarbons Rhodococcus sp. DEOB100 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7.562781437 7.531704738 7.282806399 7.589217576 7.955742319 8.216008726 8.127890282 7.911431503 8.09337562 150006666 ArsC Metal Resistance Arsenic Bacteroides vulgatus ATCC 8482 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides vulgatus; 7.459603275 7.889594647 7.646878378 8.147841208 7.677990968 119863616 TerZ Metal Resistance Tellurium Psychromonas ingrahamii 37 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas;species:Psychromonas ingrahamii; 7.112900913 7.213371218 6.769746459 7.319256262 6.903395815 6.963994003 240862236 sigma_24 Stress Sigma factors Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.346783304 7.341452252 7.60848046 7.218121182 7.241316673 7.809351933 7.347254392 7.25581322 227528731 cda Carbon cycling Carbon degradation Starch Lactobacillus ruminis ATCC 25644 7.527964815 7.291110986 7.371843331 7.360506493 7.461043258 7.337761782 7.571350522 7.09348506 7.274726249 1657700 iro virulence Vibrio vulnificus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.283249443 7.080769131 7.127639355 7.031933325 7.21791393 7.151678341 7.028716655 212531645 pheA Organic Remediation Aromatics Other aromatics Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 6.874508742 7.178945099 251730504 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.031148214 7.031230887 7.21728003 6.876462373 7.265368763 7.304780372 7.209505837 7.607871772 145255113 vdh Carbon cycling Carbon degradation Others Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.827501483 7.893760904 7.698114824 7.485071401 7.493942931 7.726406307 7.248533695 7.374171023 7.792042434 78513590 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.607239036 7.223136975 7.53094158 7.622155679 7.596246445 7.385315937 7.366794941 124514711 ABC_transporter_II Bioleaching other category Leptospirillum sp. Group II UBA 7.027590434 6.885824776 149902794 CadA Metal Resistance Cadmium Clostridium beijerinckii NCIMB 8052 7.672769321 7.271028386 7.459204304 7.815943967 7.433564161 7.951871494 160898309 alkJ Organic Remediation Other Hydrocarbons Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.520932602 7.707957383 7.700020576 7.80957442 7.549311962 7.962320125 7.542378475 7.678634183 7.71967216 88802898 oxyR Stress Oxygen stress Polaribacter irgensii 23-P superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Polaribacter;species:Polaribacter irgensii; 7.355509613 7.079304417 7.011335515 7.308746118 25361031 groEL Stress Heat shock Aegyptianella pullorum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales;family:Anaplasmataceae;genus:Aegyptianella; 7.739265716 7.700560177 7.44705411 7.247711146 7.519951963 241867448 ureC Nitrogen Ammonification Sphingobacterium spiritivorum ATCC 33861 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium;species:Sphingobacterium spiritivorum; 8.045700356 7.876442959 7.778160494 7.293373135 7.324054013 7.806147025 7.81185742 8.031657685 226093717 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus brevis; 7.037134807 7.30274777 83774703 glnA Stress Nitrogen limitation Aspergillus oryzae 7.011359231 7.268837968 7.490297845 7.394702605 7.130184836 7.895227852 6.894815137 7.331235484 148252364 alkK Organic Remediation Others Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.479052183 8.162059077 7.833565643 7.944514568 8.330547197 8.118407433 7.952473312 7.774327579 8.165226562 242280315 fnr Stress Oxygen stress Desulfovibrio salexigens DSM 2638 7.386350175 7.56525194 7.406881934 7.019913742 6.961044611 7.37991127 154323135 amyA Carbon cycling Carbon degradation Starch Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 7.535899556 7.262415627 7.318750905 6.693525197 7.594430046 7.116487686 7.274691163 7.56835748 111152780 TerZ Metal Resistance Tellurium Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 7.406280131 7.359656443 7.328385574 7.202075955 7.473396117 7.75631369 7.226714861 7.3744641 7.45159011 41331 pilin virulence pilin Eikenella corrodens superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Eikenella; 7.79485348 7.817535114 7.643122068 7.470941427 7.523648953 7.193805754 7.153235946 iegAssA27 AssA Carbon cycling Carbon degradation Others 8.083791924 7.944333777 7.832383624 7.69974534 7.633837938 7.828807606 256755373 pstA Stress Phosphate limitation Clostridium papyrosolvens DSM 2782 6.408243288 7.125684295 6.753926904 6.886125289 167367743 bco Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.104668627 7.42897393 7.206299047 7.159338277 7.58392474 7.525826345 7.3233426 7.265410986 71733895 trzN Organic Remediation Herbicides related compound Pseudomonas syringae pv. phaseolicola 1448A 8.745172722 8.775275582 8.755937197 8.584518231 8.618096811 8.68614971 8.960496581 8.970158172 8.94055502 58002474 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Gluconobacter oxydans 621H superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter oxydans; 6.933928347 7.287130271 7.562104516 7.55974181 7.192131021 237807617 sigma_24 Stress Sigma factors Tolumonas auensis DSM 9187 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Tolumonas;species:Tolumonas auensis; 7.504483206 7.360867661 7.294149252 7.024006486 7.323104105 254042420 fnr Stress Oxygen stress Hirschia baltica ATCC 49814 8.012195204 7.856921259 7.831179649 7.913210654 7.614996443 7.741767511 8.005878318 7.79735421 7.779441528 229326839 phoA Stress Phosphate limitation Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 7.567873636 7.59927941 7.792155126 7.261311341 7.871774439 7.941009117 7.944313023 7.653105301 7.67078763 126667564 sigma_38 Stress Sigma factors Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 7.100623515 7.241022914 7.169685344 7.364828066 7.159818747 7.204032537 88705388 oxyR Stress Oxygen stress Congregibacter litoralis KT71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 7.328060936 7.516118266 7.31702347 7.107635836 7.172952733 7.776037656 7.226169067 7.249776095 7.444596729 134298214 TerZ Metal Resistance Tellurium Desulfotomaculum reducens MI-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum reducens; 7.852927216 7.60108074 7.44111675 7.551403843 7.755489752 7.828792336 37955566 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 6.998159103 7.159369006 260617705 pilin virulence pilin Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 7.543429935 7.690529471 7.37776201 7.164987263 152957877 mauAB Organic Remediation Herbicides related compound Hyphomicrobium sulfonivorans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 7.612493353 7.684334777 6.90636803 7.567733106 7.433130757 7.592650253 7.506437447 164657989 grpE Stress Heat shock Malassezia globosa CBS 7966 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Exobasidiomycetes;order:Malasseziales;family:Malasseziaceae;genus:Malassezia;species:Malassezia globosa; 7.121128051 7.173034349 7.20295304 7.209769108 7.043703013 160366010 fnr Stress Oxygen stress Delftia acidovorans SPH-1 7.790792411 7.72635056 7.539254843 7.459894461 7.99245949 7.956657061 7.628643217 7.646759433 7.801465432 237786505 AceA Carbon cycling Carbon degradation others Corynebacterium kroppenstedtii DSM 44385 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium kroppenstedtii; 7.521575371 7.734175128 7.3413743 7.119731832 7.906532145 23123608 cadBD Metal Resistance Cadmium Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 7.599336186 7.278765961 7.114513061 7.308868178 117998354 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.212336681 7.279184703 6.806029915 7.546549903 39982969 phoB Stress Phosphate limitation Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 7.324998538 7.535738304 7.716971191 7.327446669 7.652788188 8.074010964 7.939755801 7.739551583 7.860436936 81428231 proV Stress Osmotic stress Lactobacillus sakei subsp. sakei 23K superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus sakei; 6.991147657 7.663118052 227491084 glnA Stress Nitrogen limitation Corynebacterium pseudogenitalium ATCC 33035 7.348185115 7.429914949 7.262974433 7.828147461 120587490 MFS_antibiotic Antibiotic resistance transporter Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 7.606191891 7.597248941 7.362154045 7.30253662 7.489835641 7.784666221 7.592466566 7.539735984 7.647733192 18266224 FTHFS Carbon cycling Acetogenesis uncultured environmental landfill bacterium superkingdom:Bacteria; 8.179783223 7.749054553 7.745451104 7.871731549 8.068138627 13517035 gyrB other category gyrB marine CFB-group bacterium MBIC04469 superkingdom:Bacteria;phylum:Bacteroidetes; 8.557862868 8.114895328 7.636676986 7.516546497 7.944416107 8.220044027 7.769433028 7.591016599 7.314113031 225037863 groEL Stress Heat shock Blautia hydrogenotrophica DSM 10507 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Blautia;species:Blautia hydrogenotrophica; 7.189895785 7.53383158 126718811 nhh Organic Remediation Aromatics Nitoaromatics Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.918600779 8.022688073 7.866008327 7.750476371 8.080831415 8.309478885 8.158111439 7.861405266 7.907873423 206737986 sigma_70 Stress Sigma factors Coprothermobacter proteolyticus DSM 5265 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermodesulfobiaceae;genus:Coprothermobacter;species:Coprothermobacter proteolyticus; 7.057758738 7.225691168 6.938296183 7.197669604 7.551734049 14026839 nmoA Organic Remediation Aromatics Nitoaromatics Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 8.177342007 8.376096378 7.69872507 7.551724733 7.90337937 7.894501186 7.759697541 8.118600396 111918692 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.376235595 7.283538685 7.193131581 6.747459441 6.967180538 7.550088273 7.072859053 7.109813038 7.40588151 153953413 proV Stress Osmotic stress Clostridium kluyveri DSM 555 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium kluyveri; 7.698545812 7.464861427 7.27114979 7.141571431 7.723337492 15899032 linB Organic Remediation Pesticides related compound Sulfolobus solfataricus P2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus;species:Sulfolobus solfataricus; 7.615484998 7.37675744 7.6479293 7.101996229 7.365668706 76443552 nifH Nitrogen Nitrogen fixation Clostridium sp. Kas107-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 7.169963738 7.082648254 50842291 TerC Metal Resistance Tellurium Propionibacterium acnes KPA171202 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 7.327979924 7.487736979 23821234 merB Metal Resistance Mercury Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.342231155 7.357265262 7.302723767 7.338833485 7.494604836 7.101648005 7.384944018 121610389 ara Carbon cycling Carbon degradation Hemicellulose Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 7.064290377 7.2510957 6.980382503 7.501634147 210159617 cellobiase Carbon cycling Carbon degradation Cellulose Collinsella stercoris DSM 13279 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella stercoris; 8.102055841 8.040649045 8.160527339 8.11468739 8.087821753 8.367877446 7.908412592 8.194645254 7.80806578 18034328 dsrA Sulphur sulfite reductase Desulforhopalus singaporensis superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulforhopalus; 7.677308632 7.666945947 7.74756974 7.49467815 7.868476801 8.006709885 8.171910758 7.914278101 7.847354054 259500591 sigma_70 Stress Sigma factors Lactobacillus iners DSM 13335 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus iners; 7.376417581 7.299229227 7.050524307 7.361243078 126319497 mdlD Organic Remediation Aromatics Other aromatics Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.842478907 7.725394491 7.91501309 7.247458925 7.731475477 7.759294016 8.147273382 86139507 Catechol Organic Remediation Aromatics Other aromatics Roseobacter sp. MED193 7.745435326 8.068189022 8.137757641 8.1242524 7.552649271 8.208148491 7.604873181 7.780296886 7.677696899 84778291 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.49374988 8.111296405 7.781871112 7.369902714 7.855665377 7.866714813 7.45473636 7.171715782 7.703650429 229525103 pilin virulence pilin Vibrio cholerae bv. albensis VL426 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 7.260369263 7.211074792 190574353 merP Metal Resistance Mercury Stenotrophomonas maltophilia K279a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 8.714391859 8.291076467 8.653976369 8.191377332 8.46553828 8.282385655 8.698065598 8.815789809 8.428972892 120595616 narJ Stress Oxygen limitation Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 7.773144038 7.626735068 7.368675636 7.09799128 7.293014772 7.807776484 7.449302298 7.068209634 7.155994982 220710265 ChrA Metal Resistance Chromium Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.048392244 7.716144987 7.658350644 7.554640397 7.797300574 25169080 alkH Organic Remediation Other Hydrocarbons Arthrobacter nicotinovorans superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.405475031 7.931964458 8.098994258 7.919255439 8.209842305 8.133864867 8.231107387 8.295918937 8.312898184 258634967 pstB Stress Phosphate limitation Pantoea sp. At-9b 7.382751392 7.481273323 7.511364048 7.319425495 7.493960881 8.105640189 7.464318881 7.494845503 7.580473086 209401886 narG Nitrogen Denitrification uncultured bacterium 7.884479669 7.66863926 7.874161872 7.372924543 7.815359049 7.553339402 7.661831841 7.931956997 7.588314265 91695492 Catechol Organic Remediation Aromatics Other aromatics Polaromonas sp. JS666 7.113596923 7.196984814 7.002651786 7.035537058 7.150807651 7.528604417 7.176844978 7.15282449 7.491529784 219721872 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Stenotrophomonas sp. SKA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 7.900282097 7.768335298 7.51938174 7.487957043 7.747369731 7.820968929 7.822017828 7.619268181 7.931493763 158336122 NiR Nitrogen Assimilatory N reduction Acaryochloris marina MBIC11017 7.382038007 7.232797061 6.980130552 7.578521903 216408351 katE Stress Oxygen stress Gibberella moniliformis superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella; 7.193322983 6.998334658 46520005 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6.999146425 7.232658414 6.977519616 7.304792799 259028864 glnA Stress Nitrogen limitation Mesorhizobium opportunistum WSM2075 7.713110631 7.604171592 7.654547813 7.162410477 7.787167617 7.842156162 7.717900767 7.391776822 7.749766667 5458357 CopA Metal Resistance Copper Pyrococcus abyssi GE5 8.222713302 7.974184734 7.906038743 7.980759511 8.722990281 8.183663387 8.508630153 8.512298937 73534361 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.226667478 7.150593836 7.345673444 6.806574627 7.758921048 21646802 dsrB Sulphur sulfite reductase Chlorobium tepidum TLS 8.130633804 7.962719119 8.282778727 8.333669448 8.237475681 8.357745051 7.971125207 5830487 CDH Carbon cycling Carbon degradation Cellulose Rhodococcus erythropolis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7.23680309 7.454006348 7.549145982 7.924796956 7.210483654 7.306443986 7.052084688 73749321 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. CBDB1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.662399824 7.588081019 7.523123165 7.067978947 7.255787875 7.905664952 7.624922204 7.542464597 7.800390027 33669021 CadA Metal Resistance Cadmium Rhodococcus erythropolis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.178535443 8.204880022 7.973426285 7.596051374 8.141145124 7.753677668 7.914230031 8.150875859 8.13684037 85707382 nreB Metal Resistance Nickel Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.630594779 8.18982408 7.85064666 7.955736306 8.498521188 8.184536448 8.225007875 8.128160844 8.290348137 260062120 B_lactamase_C Antibiotic resistance Beta-lactamases Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 7.4369474 7.401527701 7.433748116 7.404985276 7.405976462 7.897026899 7.613140026 7.576631353 7.606643422 49656804 nagG Organic Remediation Aromatics Aromatic carboxylic acid Debaryomyces hansenii CBS767 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Debaryomyces;species:Debaryomyces hansenii; 6.906705092 7.155971002 260649702 iro virulence Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 7.625875326 7.660862481 8.090102868 8.141830171 7.811069024 8.156481302 8.161157427 8.029595606 8.045020617 6460538 CadA Metal Resistance Cadmium Deinococcus radiodurans R1 8.50660454 8.738956793 9.01041678 9.054860944 8.936303405 9.122543112 8.987657187 9.321800276 8.984957109 83308150 major_capsid_protein Bacteria phage STRUCTURAL Enterobacteria phage K1F order:Caudovirales;family:Podoviridae;genus:T7-like viruses; 7.480317359 7.41762725 7.730922799 7.576607205 7.860794739 7.634149954 7.696483931 7.518839532 4775467 pstB Stress Phosphate limitation Haloferax volcanii 9.131955041 9.019784816 8.603344204 28808471 katE Stress Oxygen stress Vibrio parahaemolyticus RIMD 2210633 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.476530673 7.630855259 7.494638152 7.270784526 6.84360656 7.732112644 7.223765839 7.164856155 7.679740965 169344678 srt virulence surface protein Clostridium perfringens C str. JGS1495 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium perfringens; 7.75605816 7.346624179 7.414942594 238750316 pstA Stress Phosphate limitation Yersinia rohdei ATCC 43380 6.919548622 6.97569731 6.845413672 6.77922624 7.682967117 7.002455968 7.399649677 108467403 proV Stress Osmotic stress Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 8.901099118 8.546183954 8.158858492 8.261350629 8.887721368 8.354070977 8.902691423 8.99675926 8.801718527 21623080 ahpC Stress Oxygen stress Buchnera aphidicola str. Sg (Schizaphis graminum) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Buchnera;species:Buchnera aphidicola; 7.426873863 7.355913083 7.21601269 6.847625303 7.143106996 258561542 fnr Stress Oxygen stress Corynebacterium genitalium ATCC 33030 7.736187198 7.768608002 7.831450048 7.858825957 8.272664162 7.983123542 8.394997813 8.351009571 8.384663658 89082106 ureC Nitrogen Ammonification Oceanospirillum sp. MED92 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Neptuniibacter; 7.387292873 7.290825046 7.533537925 7.305532074 7.640862973 210071367 Catechol Organic Remediation Aromatics Other aromatics Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.347429731 7.084410045 7.14053188 196206807 CopA Metal Resistance Copper Cyanothece sp. PCC 8802 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.320822227 7.32751105 269790386 pcc Carbon cycling Carbon fixation Thermobaculum terrenum ATCC BAA-798 superkingdom:Bacteria;genus:Thermobaculum;species:Thermobaculum terrenum; 7.337762332 7.012698804 226294165 ara_fungi Carbon cycling Carbon degradation Hemicellulose Paracoccidioides brasiliensis Pb18 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides;species:Paracoccidioides brasiliensis; 7.955310541 7.803171893 7.749817496 6.996014518 7.620846227 7.465004824 261857098 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.280275534 7.472954618 7.947918725 227992534 ahpC Stress Oxygen stress Meiothermus ruber DSM 1279 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 7.771391365 7.56999619 7.56330223 7.570552258 7.599472055 7.529819052 7.409455361 7.560796298 156741894 sigma_24 Stress Sigma factors Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 7.494282803 7.779578693 8.077275428 7.995002835 8.03837176 8.107351224 7.905095678 8.003973259 7.900054763 212680789 tutFDG Organic Remediation Aromatics BTEX and related aromatics Providencia rustigianii DSM 4541 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 7.820632806 7.535164331 7.663300108 8.362856428 8.103530983 8.266269348 7.816040236 8.182068217 8.245220664 156742299 nplT Carbon cycling Carbon degradation Starch Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 7.739449475 7.371284532 7.825791992 7.833700532 7.625399206 7.641109697 7.555874887 7.548427235 261312333 fnr Stress Oxygen stress Mannheimia haemolytica serotype A2 str. BOVINE 7.144075681 7.458375466 7.087761731 7.193569036 7.614526211 18150924 akbF Organic Remediation Aromatics BTEX and related aromatics Pseudomonas putida 7.182684093 7.188795211 7.558465129 6.918100405 6.856258019 7.603275955 133778538 endochitinase Carbon cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 7.694471285 7.757997186 7.895498693 7.210471079 8.021125672 7.972828082 7.774649004 7.959093338 7.670365971 121607500 pilin virulence pilin Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 8.353638678 8.544924705 8.544036338 8.282778727 8.884047363 8.462865818 8.779102275 8.676453667 8.7066229 12722380 ArsC Metal Resistance Arsenic Pasteurella multocida subsp. multocida str. Pm70 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Pasteurella;species:Pasteurella multocida; 7.420635392 7.074303837 7.022045948 6.59705041 6.689920169 7.378804755 48928004 endochitinase Carbon cycling Carbon degradation Chitin Hypocrea lixii superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 7.093242827 7.331102238 7.054368879 6.775079925 7.481250912 88863555 glnA Stress Nitrogen limitation Jannaschia sp. CCS1 6.946989536 7.095256882 7.04848664 7.202224934 7.095949244 7.494172842 15613869 katE Stress Oxygen stress Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 7.786768469 7.392407811 7.299875436 7.284440963 7.029996803 7.761351717 7.315714417 7.001737107 7.306295017 77362681 catB Organic Remediation Aromatics BTEX and related aromatics Rhodococcus sp. AN-22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7.847948242 7.462069676 7.740800889 7.432486792 7.849579897 7.468880498 7.274313348 7.857438998 89082251 pilin virulence pilin Oceanospirillum sp. MED92 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Neptuniibacter; 7.042859098 7.029148734 6.907403148 6.812198204 6.797120935 7.486458261 238695016 endolysin_glycosidase Bacteria phage LYSIS Enterobacteria phage JSE order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.36368086 6.811931049 7.120001038 219848925 bphF1 Organic Remediation Aromatics Polycyclic aromatics Chloroflexus aggregans DSM 9485 7.170531838 7.117628708 7.367087797 6.930782775 6.850200145 7.534023694 7.293648445 7.075188775 7.270072026 182412403 sigma_24 Stress Sigma factors Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 7.722772234 7.404435218 7.652413982 7.069432054 7.413799188 7.888053883 7.305709106 7.24066144 7.622505373 114705857 ureC Nitrogen Ammonification Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 8.531652136 8.124626379 8.19171403 8.390974758 8.409598064 8.40565467 7.9083784 8.20483086 151302230 AprA Sulphur adenylylsulfate reductase sulfate-reducing bacterium JHA1 7.754835735 7.647211013 7.52378018 7.273594663 7.551168583 7.881565433 7.434013416 7.532077473 7.583525333 156600886 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.396940493 7.086672511 7.39505036 7.179490547 6.920967314 190012276 mer Metal Resistance Mercury Stenotrophomonas maltophilia K279a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 7.845207873 8.131046288 7.706201268 7.329581157 8.070475458 7.827202844 7.989768193 7.965055847 7.492073302 91684214 nagG Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.382420717 7.245936455 7.626794369 7.85548508 7.364079047 7.752485186 7.133715183 7.32634137 7.54740959 158334969 obgE Stress Radiation stress Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;genus:Acaryochloris;species:Acaryochloris marina; 8.051988524 7.893053867 7.689457306 7.763037249 8.234458822 7.886603709 8.323379865 8.151520821 8.225447782 156108234 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 7.548762076 7.704006447 7.777208236 7.610104049 7.898981534 7.867604159 7.880740288 7.515280039 7.72076023 188584967 pstB Stress Phosphate limitation Natranaerobius thermophilus JW/NM-WN-LF 7.210878069 6.964267437 57117052 SMR_antibiotics Antibiotic resistance transporter Mycobacterium tuberculosis H37Rv superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 7.916671076 7.700266461 7.492938273 7.656984837 7.338249637 7.600958548 7.531174073 7.724055636 7.604356572 213556940 gyrB other category gyrB Pseudoruegeria sp. HD-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudoruegeria; 7.391544476 7.331690793 7.307276423 7.106366207 7.34649069 159104982 pstB Stress Phosphate limitation Malassezia globosa CBS 7966 7.154742758 7.465125784 7.302938563 7.018569157 7.015712184 84686973 sox Sulphur Sulphur oxidation Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.306384071 7.28671276 7.47109213 7.562067636 6.633313916 8.099620229 7.268616767 7.138616825 7.559642164 71149615 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 7.858442971 7.468356179 7.775340226 7.163222202 7.550165365 7.587008748 7.650276353 254477664 glnA Stress Nitrogen limitation Ruegeria sp. R11 7.741630171 7.560108197 7.531518866 7.319257955 7.75859942 8.065174683 7.591492848 7.453894857 7.512692336 153896435 catB Organic Remediation Aromatics BTEX and related aromatics Halorubrum lacusprofundi ATCC 49239 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 7.955834582 7.743224346 7.503088581 7.456561456 8.001153534 8.09947741 8.198821049 8.061711972 83635472 aclB Carbon cycling Carbon fixation Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 7.409082561 7.375975239 7.484776306 7.533554368 37522141 sigma_70 Stress Sigma factors Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 7.235950225 6.79903941 7.190870361 6.633965463 7.007136709 7.493532225 7.013342193 6.987034467 50122425 proX Stress Osmotic stress Pectobacterium atrosepticum SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 7.157925686 6.910597967 7.148089769 6.706629857 7.37597636 256775234 phoB Stress Phosphate limitation Streptomyces hygroscopicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces hygroscopicus; 7.99197013 7.784333271 7.640822883 7.662472608 7.958273905 7.987846932 8.068839153 7.658366437 7.822426533 84778733 TerC Metal Resistance Tellurium Sodalis glossinidius str. 'morsitans' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Sodalis;species:Sodalis glossinidius; 7.34697136 7.182274746 7.452337642 7.296010354 7.048925964 7.753365311 7.281989713 7.209217805 7.409734699 4490766 endoglucanase Carbon cycling Carbon degradation Cellulose Bacillus sp. BP-23 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.140754575 6.963295864 7.055097262 7.013065196 7.566171475 134053071 obgE Stress Radiation stress Desulfotomaculum reducens MI-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum reducens; 7.118773362 6.703389502 7.011949532 154243731 pheA Organic Remediation Aromatics Other aromatics Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 7.549483851 7.385853207 7.450911719 7.441393002 7.431445534 7.366865246 7.557141709 227528354 hly virulence hemolysin Lactobacillus ruminis ATCC 25644 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus ruminis; 7.945260322 8.049670754 7.613002591 7.852041676 7.581470482 7.995772184 7.920715028 7.933174833 7.601611115 71383726 nasA Nitrogen Assimilatory N reduction Synechococcus sp. UW105 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.525793372 7.228079544 7.6613127 7.515027285 7.283169469 7.390527324 7.249143614 77978679 pulA Carbon cycling Carbon degradation Starch Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 7.406707883 7.296244913 7.322759997 6.686996694 7.53865948 7.220503962 7.353024798 54308915 amyA Carbon cycling Carbon degradation Starch Photobacterium profundum SS9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 7.618421708 7.37541673 7.467580935 7.113989746 7.483640648 7.566136087 7.338512879 7.620250859 7.495724787 242807247 amyA Carbon cycling Carbon degradation Starch Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 7.215411054 7.210493922 7.156484611 6.909023214 7.420248872 7.04932964 6.988923917 7.1399553 90954563 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.125035164 7.907734045 7.437541955 7.888713527 7.952336058 8.03842322 7.955749803 7.605629821 7.574878075 113475816 nagG Organic Remediation Aromatics Aromatic carboxylic acid Trichodesmium erythraeum IMS101 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Trichodesmium;species:Trichodesmium erythraeum; 7.40270502 7.183718647 7.275097742 7.017938474 7.785865118 7.127259645 7.193171647 78059683 ArsC Metal Resistance Arsenic Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.216127042 7.539138431 7.399517056 7.469961141 6.639916406 6.908392823 7.372509438 156532368 SMR_antibiotics Antibiotic resistance transporter Enterobacter sakazakii ATCC BAA-894 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 7.575910494 7.828443271 7.851788026 8.114690098 7.780117725 7.466743712 7.993828356 7.947077864 168241610 NirB Nitrogen Assimilatory N reduction Salmonella enterica subsp. enterica serovar Heidelberg str. SL486 7.13735891 7.018113323 7.079122045 6.851517624 7.275428199 212634759 Arylest Organic Remediation Aromatics Other aromatics Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 7.954449101 7.656175114 7.586312712 6.99622947 7.600149817 7.528259463 7.119172279 7.582207405 7.31954314 58709678 endoglucanase Carbon cycling Carbon degradation Cellulose Phanerochaete chrysosporium superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 6.991621297 7.046860522 157148223 MFS_antibiotic Antibiotic resistance transporter Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 6.970739821 7.495452657 7.108010004 7.146045931 99030603 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 7.665055818 8.025740899 7.692384693 7.461811084 7.717588337 8.020713145 8.030346757 7.885583063 8.070225532 224826296 fnr Stress Oxygen stress Lutiella nitroferrum 2002 7.193638257 7.003442375 6.689264581 7.408648567 268161739 sigma_24 Stress Sigma factors Photobacterium damselae subsp. damselae CIP 102761 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium damselae; 7.062190366 7.167877461 6.683771998 7.276802305 22299693 dnaK Stress Heat shock Thermosynechococcus elongatus BP-1 7.334931693 7.192157224 7.333508724 7.107805904 7.574317618 7.249152101 7.175970768 7.367388202 170123948 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Escherichia albertii TW07627 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 7.183069702 7.066729956 6.974029742 7.219749768 90196203 CopA Metal Resistance Copper Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.127680118 7.862362556 7.938342242 7.584510187 7.765360711 8.517164337 7.79764547 7.612527242 7.631686932 17228403 pstB Stress Phosphate limitation Nostoc sp. PCC 7120 7.175571868 7.256068441 171277976 bco Organic Remediation Aromatics Aromatic carboxylic acid Bifidobacterium dentium ATCC 27678 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium dentium; 7.468788783 7.419609709 7.390850744 7.509005885 7.56584008 110225010 gyrB other category gyrB Streptococcus sanguinis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 7.014190102 7.271264486 6.92547013 7.453147633 111150139 alkK Organic Remediation Others Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 7.801006364 7.593687444 7.552415158 83972372 nosZ Nitrogen Denitrification uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 8.172790766 8.314527007 8.458558441 8.456916104 7.060253059 8.711991471 7.862719668 7.554582129 8.224647055 260621296 sigma_24 Stress Sigma factors Bacteroides finegoldii DSM 17565 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides finegoldii; 7.353087348 7.35229262 7.301339084 6.810298612 7.007012496 7.596353817 7.185907228 7.045551069 7.260780205 227496591 srt virulence surface protein Actinomyces urogenitalis DSM 15434 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces urogenitalis; 7.669664517 7.407167916 7.876788075 8.02652229 7.811781652 7.843326375 7.615261977 8.223404566 90576419 ZntA Metal Resistance Zinc Clostridium difficile QCD-32g58 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium difficile; 6.957456246 6.997097663 118667230 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.226485967 7.22813431 7.71279307 7.465095631 7.42235723 7.767376898 7.403862822 7.157810521 7.32900324 158510763 pstC Stress Phosphate limitation Desulfococcus oleovorans Hxd3 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus;species:Desulfococcus oleovorans; 7.720459674 7.749273405 7.899254905 7.474126709 8.066677138 8.180353048 8.20997189 7.900177867 7.967045794 90419917 AceA Carbon cycling Carbon degradation others Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 7.987079774 7.913929026 8.131554264 8.317123008 7.714453163 8.432635111 7.868812834 7.837151252 7.771339346 146296573 ara Carbon cycling Carbon degradation Hemicellulose Caldicellulosiruptor saccharolyticus DSM 8903 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Caldicellulosiruptor;species:Caldicellulosiruptor saccharolyticus; 7.605085986 7.549263241 7.015184569 7.622888577 7.954791984 7.552602523 7.426939342 7.916511609 106765647 endochitinase Carbon cycling Carbon degradation Chitin Clostridium phytofermentans ISDg superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium phytofermentans; 7.694103833 7.502246705 7.467534418 7.609016278 7.337656715 7.596052692 7.638349469 7.328009523 237666804 ctsR Stress Protein stress Clostridium butyricum E4 str. BoNT E BL5262 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium butyricum; 7.102034755 7.170824794 7.070651733 7.357939022 119858388 nitro Organic Remediation Others Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.973306293 7.864574855 7.714874594 7.800436396 7.94957874 8.089899634 7.647037679 7.588372403 7.683119538 114308719 CopA Metal Resistance Copper Nitrosomonas eutropha C71 6.968840984 7.185419523 71554397 pilin virulence pilin Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 7.242878498 7.204075901 7.262381384 7.057872369 7.550252558 7.564578155 7.313899163 7.17251012 58041828 nagL Organic Remediation Aromatics Aromatic carboxylic acid Klebsiella pneumoniae 7.945733862 7.048517352 7.748416248 6.99561093 7.639155026 86211712 merG Metal Resistance Mercury Streptomyces sp. NRRL 30748 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7.260443816 7.318200417 7.243913686 7.237971606 7.059712642 8.171949937 7.456286509 7.120109809 7.50365031 154684524 gyrB other category gyrB Bacillus amyloliquefaciens FZB42 7.778173849 7.604055569 7.880749391 7.52551129 7.402182292 7.912048419 7.795475375 7.916926014 7.830387284 239579687 nrfA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.728676631 7.792862321 7.567186675 7.277005913 7.095675732 7.579806865 7.095503241 146302968 glycosyl_transferase_EPS Bioleaching EPS Metallosphaera sedula DSM 5348 7.697548568 7.224224737 7.260976387 7.049545165 7.020437579 7.789617073 40795462 primase Bacteria phage REPLICATION Aeromonas phage 65 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.201537071 7.228211494 7.292410963 7.016392337 6.73009192 7.292245533 6.877490905 7.000348547 169831638 fnr Stress Oxygen stress Candidatus Desulforudis audaxviator MP104C 7.640637213 7.996325558 7.478682594 7.796874141 7.808489599 154686756 pstB Stress Phosphate limitation Bacillus amyloliquefaciens FZB42 7.330339642 7.251670155 7.447742325 7.383446275 7.512760029 7.358805435 7.095331461 7.466238618 39650366 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.751504596 7.739091889 7.845244682 7.730471855 7.828633913 7.969235866 7.932899452 7.99650375 28192583 toxin virulence toxin Escherichia coli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 7.30104236 7.055780417 46307894 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6.999093667 6.650407309 7.161839642 6.889036846 7.247380288 70779395 akbF Organic Remediation Aromatics BTEX and related aromatics Burkholderia cepacia 7.668662982 7.477257587 7.77698442 7.838536416 7.986902758 8.181376853 8.172715836 8.018661454 29466000 norB Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.819995346 7.829282224 7.343323413 7.669677078 7.705827621 8.039721114 7.896856876 7.332100998 7.866902221 92912811 pcpB Organic Remediation Herbicides related compound Mycobacterium sp. KMS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.463333216 8.290841216 8.211577527 8.069791757 8.654774961 8.094236853 8.339348478 8.276428492 8.694670524 255302972 iro virulence Acinetobacter radioresistens SK82 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter radioresistens; 7.239633755 7.137408773 6.636199386 7.544855488 7.10675123 6.740547686 7.165638907 188019215 narJ Stress Oxygen limitation Providencia stuartii ATCC 25827 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia stuartii; 7.153771145 7.196762817 7.314225657 6.708229689 7.313035057 6.943485341 7.380843557 187926707 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 7.552088523 7.514937704 7.337725704 7.243268315 7.59111761 7.388739216 7.284525632 7.369509672 190686626 gyrB other category gyrB Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 7.16294468 7.270900084 7.203511099 6.892879909 6.901277657 7.637112577 7.114576027 7.129352642 7.538186278 89951623 pimF Organic Remediation Aromatics Aromatic carboxylic acid Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 7.44316469 7.270131633 7.255310571 7.405482233 6.958981817 7.594835283 7.175177638 7.366555868 167753558 pcc Carbon cycling Carbon fixation Alistipes putredinis DSM 17216 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes;species:Alistipes putredinis; 7.262924761 7.122469163 7.159896491 7.003313074 7.013086956 7.53973477 7.299023101 7.442896162 4105514 rubisco Carbon cycling Carbon fixation Halothiobacillus neapolitanus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Halothiobacillaceae;genus:Halothiobacillus; 7.565507204 7.004385302 7.020588 7.09891711 38232613 ureC Nitrogen Ammonification Yersinia kristensenii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia; 7.612042707 7.808175352 8.674675803 8.386371947 8.372731039 8.371097724 8.22842617 8.137715345 229734189 ara Carbon cycling Carbon degradation Hemicellulose Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 7.344197757 6.865096353 6.955751514 6.623220487 7.556429512 7.147534171 7.093591252 227240453 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Sphingobacterium spiritivorum ATCC 33300 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium;species:Sphingobacterium spiritivorum; 7.411052873 7.142274521 7.415320322 7.384142111 7.103458424 7.116729334 7.207562072 150034100 nifH Nitrogen Nitrogen fixation Methanococcus maripaludis C7 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanococcaceae;genus:Methanococcus;species:Methanococcus maripaludis; 7.638591908 8.146286709 8.428887218 7.744686598 8.539998025 7.814761525 8.009737671 8.438403573 72117543 CODH Carbon cycling Carbon fixation Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.271032533 7.748807959 7.724554757 7.817321322 6.7211089 8.076478695 7.419018412 7.339722037 7.523994999 260776659 pstS Stress Phosphate limitation Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 7.02865378 7.42268716 7.072442834 7.406799715 7.560806027 7.099853256 7.059662807 7.311374808 119899516 sigma_70 Stress Sigma factors Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8.035175474 7.733211086 8.057569489 8.276394918 7.923480237 8.685005436 7.812078653 8.093626032 7.786839693 218171575 clpC Stress Protein stress Cyanothece sp. PCC 7424 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.877520627 7.826549455 7.779589408 7.723430152 7.676429123 7.809231345 7.245325509 7.517314321 7.386510834 82568129 gyrB other category gyrB Thermoactinomyces vulgaris superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Thermoactinomycetaceae;genus:Thermoactinomyces; 7.993391666 7.79815512 7.582757829 7.910696357 7.700243895 8.243949895 7.672829934 7.704646507 7.610589641 2370410 napA Nitrogen Dissimilatory N reduction Pseudomonas sp. superkingdom:Bacteria;phylum:Proteobacteria; 8.301085319 8.228606045 8.211979812 7.708653164 8.314015278 8.156052586 8.297599223 8.139555253 7.998029976 260587123 pstA Stress Phosphate limitation Blautia hansenii DSM 20583 7.216040149 7.663328294 111153401 pstC Stress Phosphate limitation Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 7.560474259 7.452348747 7.176053485 7.813977295 7.601671967 7.323948231 7.366682444 7.46041045 206741838 obgE Stress Radiation stress Thermodesulfovibrio yellowstonii DSM 11347 superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Thermodesulfovibrio;species:Thermodesulfovibrio yellowstonii; 7.173585575 7.385964004 7.20051305 158523636 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.126367315 7.040327991 7.538364389 7.352043581 7.63942065 29827148 tfdA Organic Remediation Aromatics Chlorinated aromatics Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 7.978645776 7.4381266 7.353354436 7.534073088 8.041047054 7.968536625 7.695537946 7.512628054 7.876518868 211905417 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.175202213 7.043698196 7.180865994 126725774 xlnD Organic Remediation Aromatics Other aromatics Rhodobacterales bacterium HTCC2150 7.180219134 6.968080313 7.207554937 6.95521857 6.683741666 7.228591638 6.980641034 7.023666058 7.429957372 225027628 clpC Stress Protein stress Eubacterium hallii DSM 3353 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium hallii; 7.736390626 7.434995026 7.425624735 6.962478001 7.518195775 7.204542102 7.270217638 7.272991086 199593971 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.064870294 7.949952244 7.316977186 7.544193096 8.001920996 8.119714892 8.191001879 8.116375985 8.088233126 85695040 AceB Carbon cycling Carbon degradation others Idiomarina baltica OS145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina baltica; 7.323139981 7.246524022 7.151224635 7.1162283 6.976070169 7.536592912 7.036402224 7.084425386 7.249013181 198271865 nrfA Nitrogen Dissimilatory N reduction Bacteroides plebeius DSM 17135 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides plebeius; 7.305204778 7.303819242 7.087614756 150036138 sox Sulphur Sulphur oxidation sulfur-oxidizing bacterium OBII5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.475766415 7.506797161 7.277254497 7.148033684 7.229303916 88643171 dsrB Sulphur sulfite reductase uncultured prokaryote 7.402402228 7.630262001 8.023160694 7.450369361 7.695168473 8.075093129 133778522 endochitinase Carbon cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 7.225792839 7.296943588 6.765466078 6.793952681 7.061039849 7.168188951 126728937 pcc Carbon cycling Carbon fixation Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 7.746675723 7.588589136 7.57658071 7.218174142 7.136411332 7.762858664 7.325730442 7.427568076 7.518495281 62288760 contractile_central_tail_tube_protein Bacteria phage STRUCTURAL Enterobacteria phage RB43 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.331041405 6.85586645 7.039402778 6.650261214 7.471808531 6.854748582 6.951611566 89053618 glnA Stress Nitrogen limitation Jannaschia sp. CCS1 8.411060468 8.002017063 7.671229459 7.985768551 8.212353739 8.023534731 8.238172029 8.129014201 7.631663136 45386209 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 7.300609362 7.492818705 7.085012665 7.484695747 73669673 glnA Stress Nitrogen limitation Methanosarcina barkeri str. Fusaro 6.853095632 6.71878874 110835322 ppx Phosphorus Phosphorus utilization Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 7.30351093 7.388959424 7.398155677 7.015167976 7.344432016 29349708 fnr Stress Oxygen stress Bacteroides thetaiotaomicron VPI-5482 7.144339947 7.099740693 6.925361139 6.89899781 6.68774091 7.32942151 7.08506521 6.742295309 7.094339514 225194131 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.965555297 7.828666897 7.913985064 7.799170682 7.846028209 8.080594381 7.741535621 7.55251724 7.601893939 91779945 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.513141037 8.095127837 8.13460279 7.560270553 7.711836263 255268849 ara Carbon cycling Carbon degradation Hemicellulose Bryantella formatexigens DSM 14469 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;species:Bryantella formatexigens; 7.338370557 6.978560852 7.112412896 7.11745421 7.075753285 182434639 ureC Nitrogen Ammonification Streptomyces griseus subsp. griseus NBRC 13350 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 7.984428496 8.018191418 8.347844953 8.613640443 8.178100254 8.555511827 8.057530347 7.941274525 8.54857304 152994392 ahpF Stress Oxygen stress Marinomonas sp. MWYL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 7.621688381 7.575596791 7.442680873 7.000181055 7.175968239 7.788364825 7.465052782 7.290575999 7.046132917 46389799 mcrA Carbon cycling Methane Methane production uncultured archaeon superkingdom:Archaea; 7.13798908 6.813323426 7.392492529 6.743483651 7.451804367 170605710 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.009549983 8.268669801 8.389192724 8.935385438 8.467325894 8.166964656 8.04950034 8.169692431 211957691 phn Organic Remediation Herbicides related compound Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 7.648867004 7.430453251 7.275397797 7.584716712 7.419541705 7.686941562 7.311510304 7.051466423 7.139623456 209401862 narG Nitrogen Denitrification uncultured bacterium 7.265563587 7.698113513 77019802 TehB Metal Resistance Tellurium Rhodococcus erythropolis PR4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 7.93016693 7.740157052 7.532503735 7.37287349 7.888370763 7.63064124 7.768098323 8.008972233 7.684565724 213970534 pcaG Organic Remediation Aromatics Other aromatics Pseudomonas syringae pv. tomato T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 7.794029975 7.58585578 7.468866367 7.475105214 7.80412037 8.068627326 7.806647545 7.670421672 7.684412222 21355049 endochitinase Carbon cycling Carbon degradation Chitin Serratia plymuthica superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 7.082365656 7.022370727 7.246426011 6.697043241 7.385109981 7.108280051 6.92842514 242813642 MFS_antibiotic Antibiotic resistance transporter Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 7.2790699 7.101328053 7.014205116 6.824385445 7.410168191 7.039425248 7.247600262 7.153409289 198255329 sigma_32 Stress Sigma factors Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 7.990700967 7.769331914 7.627473367 7.522385434 7.502583605 7.896075168 7.54400041 7.661424008 7.719914702 99083445 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.318467263 7.2131716 7.018343045 6.742294158 6.651856829 7.405103448 7.082407363 6.949831587 260775590 pilin virulence pilin Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 7.606562108 7.661672962 7.833771482 7.505197678 7.524393344 7.842389671 7.493237652 7.68905423 7.986453678 32266626 gyrB other category gyrB Helicobacter hepaticus ATCC 51449 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter hepaticus; 7.121223799 7.171759746 7.553943195 6.674411945 7.637165008 7.291053111 7.662466009 164498978 nhh Organic Remediation Aromatics Nitoaromatics Mesorhizobium sp. F28 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium; 7.318947719 7.145817095 91692993 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.669894659 7.630786593 7.655711532 7.538571779 7.451973587 7.664808022 7.535590795 7.439831724 7.564246325 223585912 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.480800765 7.305072085 7.276948306 7.200466591 7.092807358 7.56153308 7.31911161 7.249451999 7.396751155 110834924 sigma_38 Stress Sigma factors Alcanivorax borkumensis SK2 8.368045571 8.412095737 7.822283342 8.268090476 8.421391204 8.114852492 7.945918664 8.099114217 157364188 CadA Metal Resistance Cadmium Thermotoga lettingae TMO 6.732908326 7.513873545 108765922 Apc Organic Remediation Aromatics BTEX and related aromatics Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 7.773663874 7.736731531 7.754931893 7.705437134 7.785488613 7.868903053 7.859964886 7.801746416 7.760008449 29125946 nosZ Nitrogen Denitrification uncultured soil bacterium superkingdom:Bacteria; 8.152289017 7.9494688 7.821630844 7.300928836 7.506523707 7.735617514 7.974177926 7.923499164 8.184127369 163811484 CopA Metal Resistance Copper Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.578747308 7.595691906 7.688118224 7.968013424 8.206836102 7.939112449 8.111404533 7.906222323 157364341 bco Organic Remediation Aromatics Aromatic carboxylic acid Thermotoga lettingae TMO superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga;species:Thermotoga lettingae; 7.099727169 7.247664848 7.056255163 7.25289455 119391561 narG Nitrogen Denitrification uncultured bacterium 7.158033648 7.608071565 7.495762203 7.687234077 91687908 ChrA Metal Resistance Chromium Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.985218966 7.430171308 7.9179647 7.216477808 7.706354178 7.687765125 7.631270326 7.655826221 7.598756153 113879550 CopA Metal Resistance Copper Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 7.177220641 7.071838704 7.058075671 7.281617784 146192971 sox Sulphur Sulphur oxidation Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.644326276 7.942619004 7.900180504 6.920842215 214037954 sigma_38 Stress Sigma factors marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.160102399 7.194193947 7.209999413 7.684351243 50307189 ppx Phosphorus Phosphorus utilization Kluyveromyces lactis superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Kluyveromyces;species:Kluyveromyces lactis; 7.747945111 7.448292803 7.233525645 7.120624784 7.155529283 7.884595806 7.639167885 7.086083794 7.496885553 187251466 pilin virulence pilin Elusimicrobium minutum Pei191 superkingdom:Bacteria;phylum:Elusimicrobia;class:Elusimicrobia;order:Elusimicrobiales;family:Elusimicrobiaceae;genus:Elusimicrobium;species:Elusimicrobium minutum; 7.199078398 7.595012741 7.651699509 7.083999117 7.568741761 7.873321051 7.529095983 7.410041317 7.736667334 218517964 pstA Stress Phosphate limitation Acidithiobacillus ferrooxidans ATCC 23270 7.201312295 7.25350757 7.703340443 7.130676181 6.769944431 7.172136434 7.117442921 188522755 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Xanthomonas oryzae pv. oryzae PXO99A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 7.370566433 7.646333845 7.596898351 7.597864668 7.419565885 7.914473092 7.8992468 7.759559886 7.611634712 88708664 hly virulence hemolysin Flavobacteriales bacterium HTCC2170 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales; 7.551096021 7.492247109 7.401183435 7.004412325 7.096127579 7.745392939 7.165466853 7.624358823 260902581 glnA Stress Nitrogen limitation Vibrio parahaemolyticus AQ4037 7.201579556 7.229418605 6.920621169 6.72589998 7.440442615 186683962 P450 Energy process Energy process Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 7.445775625 7.328352927 7.327672972 141994 xylA Carbon cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 7.940421904 7.855498533 7.56194364 7.898092867 7.688867443 7.880653289 7.65057541 7.40588507 7.365300988 110932052 nifH Nitrogen Nitrogen fixation uncultured marine bacterium superkingdom:Bacteria; 6.962732611 7.067824684 1764155 tfdB Organic Remediation Aromatics Chlorinated aromatics Ralstonia eutropha superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.638613328 9.273125899 9.276275927 9.310118204 148556132 MFS_antibiotic Antibiotic resistance transporter Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.267752437 8.243051142 7.957582192 8.00221389 8.406793483 8.401044922 8.508038762 8.343892382 8.180867164 183985032 bphD Organic Remediation Aromatics Polycyclic aromatics Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 7.270906384 7.451150811 7.556606287 7.430250638 7.157661851 7.505130296 7.2697456 7.158702602 257446850 pstB Stress Phosphate limitation Enhydrobacter aerosaccus SK60 7.409947782 7.32286015 7.309419485 6.841298388 7.262404879 7.493932223 215887 Host_recognition_T4_type Bacteria phage HOST RECOGNITION/STRUCTURAL Enterobacteria phage T4 order:Caudovirales;family:Myoviridae;genus:T4-like viruses;species:Enterobacteria phage T4 sensu lato; 7.036535204 7.299411033 160893267 ppk Phosphorus Phosphorus utilization Clostridium sp. L2-50 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 6.893232767 7.339366174 46392640 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7.496230265 7.301684545 220911143 pstA Stress Phosphate limitation Arthrobacter chlorophenolicus A6 7.817898175 8.010154146 7.809513813 7.701137028 8.074759324 7.838438687 7.772107997 7.846273118 153000786 B_lactamase_C Antibiotic resistance Beta-lactamases Shewanella baltica OS185 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 7.502397155 7.115245096 7.267573352 7.259673659 7.179308869 182633246 iro virulence Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 7.381812839 7.500132078 7.398820438 7.309147499 7.064662745 7.535295563 7.203363664 7.320622008 7.377428231 150866302 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pichia stipitis CBS 6054 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Scheffersomyces;species:Scheffersomyces stipitis; 7.681918042 7.811495923 7.649261415 7.720826241 7.611689596 7.733619636 7.58766693 7.439707541 7.53165345 78355346 cytochrome Energy process Energy process Desulfovibrio desulfuricans G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 7.167389158 7.340473846 7.031994159 7.76768491 259508082 katE Stress Oxygen stress Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 8.32061114 8.597743432 8.607577952 8.793310924 8.743548877 8.583872701 8.986375407 8.956527605 8.609075576 117168631 vanA Carbon cycling Carbon degradation Others Polyangium cellulosum superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium; 7.654802722 7.584929082 7.036291756 7.550050794 7.51785102 7.655868347 7.60697708 28869195 fnr Stress Oxygen stress Pseudomonas syringae pv. tomato str. DC3000 7.504915902 7.313924095 7.524824141 7.509357868 7.99477207 7.901604791 7.875720283 7.45394641 7.576916576 119957613 hrcA Stress Heat shock Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 7.865087243 7.95596173 8.046266024 7.791852224 8.061254195 8.137709211 8.124314134 8.263927933 7.850862604 34419389 helicase_family_1_Dda_like Bacteria phage REPLICATION Vibrio phage KVP40 order:Caudovirales;family:Myoviridae;genus:T4-like viruses;species:Vibrio phage nt-1 sensu lato; 7.378473835 7.355896107 7.110708194 7.304165366 7.622467317 7.347540881 7.12252728 7.345567682 122090915 amyA Carbon cycling Carbon degradation Starch Yersinia enterocolitica subsp. enterocolitica 8081 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 7.063174642 7.221780212 6.955603412 7.442936816 7.251680962 6.984760344 33641289 ppk Phosphorus Phosphorus utilization Prochlorococcus marinus str. MIT 9313 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 7.061313969 7.051831363 7.400529409 6.778305947 7.429273077 29337417 ArsC Metal Resistance Arsenic Bacteroides thetaiotaomicron VPI-5482 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides thetaiotaomicron; 7.443457144 7.140756638 7.142233587 6.918779437 7.457308295 77459469 ppx Phosphorus Phosphorus utilization Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.081538558 7.767704028 7.744245097 7.070959684 7.542103329 7.616557294 7.407924404 7.566807887 7.558080289 156572294 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.211319856 7.176006854 7.112652295 7.087121258 6.660799552 7.329656531 7.137973755 6.965655748 126728833 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 7.098575809 7.29610175 7.228023518 7.118666824 62632241 Van Antibiotic resistance other Enterococcus gallinarum superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus; 6.816853961 7.159464354 56131583 groEL Stress Heat shock Piscirickettsia salmonis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Piscirickettsia; 7.217960533 7.305216551 7.058410027 6.936305941 7.558479275 118065259 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 7.379774771 7.378496939 7.333114711 7.290833613 7.153764469 7.582631167 7.39988344 7.544621035 28897532 CopA Metal Resistance Copper Vibrio parahaemolyticus RIMD 2210633 7.077850575 7.112572536 6.878571313 6.718266979 7.011357275 7.451393852 7.02717211 6.903097109 7.157094984 77539314 mhqA Organic Remediation Aromatics Nitoaromatics Burkholderia sp. NF100 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.268288261 7.06366316 7.181137898 6.614085215 7.676007752 67920745 glnA Stress Nitrogen limitation Crocosphaera watsonii WH 8501 6.815941954 6.892634074 158336347 NirB Nitrogen Assimilatory N reduction Acaryochloris marina MBIC11017 7.420426196 8.229296855 7.844412045 7.594566582 8.154480507 8.156595224 8.206805078 8.398688396 187605942 ppx Phosphorus Phosphorus utilization Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 7.057865952 7.420548086 7.15807478 7.181475252 7.519226427 7.32309916 7.442670644 94471259 narG Nitrogen Denitrification uncultured bacterium 8.058832179 7.990871865 8.240420887 8.074643782 8.07218394 8.030540939 8.211045596 241765043 hly virulence hemolysin Acidovorax delafieldii 2AN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax delafieldii; 7.609898247 7.854926151 8.099379715 8.248673201 7.939015668 83577923 TerC Metal Resistance Tellurium Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 7.693878994 7.66867192 7.407120437 7.366352339 7.559559763 7.698306058 7.356571791 7.292062054 7.55469183 108803702 fnr Stress Oxygen stress Rubrobacter xylanophilus DSM 9941 8.266365898 8.33878272 7.851512667 8.302766288 8.163254585 8.248503266 7.960779471 7.87745054 156057123 tfdA Organic Remediation Aromatics Chlorinated aromatics Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 7.238378761 7.091529726 7.224471507 6.996328613 6.968138008 7.393609018 6.983516834 6.972279343 7.303726238 56378691 proV Stress Osmotic stress Geobacillus kaustophilus HTA426 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus kaustophilus; 7.217609547 6.987289496 221739482 fnr Stress Oxygen stress Agrobacterium vitis S4 7.696496505 7.354427146 7.142735908 7.295361095 7.894994389 7.605656128 7.165518445 7.457309135 71908705 sox Sulphur Sulphur oxidation Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 7.300963869 7.162640723 7.311550207 7.143107065 7.217151028 7.404663702 7.585467219 7.311442567 7.030415162 224536266 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Bacteroides cellulosilyticus DSM 14838 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 7.316925638 7.470141815 7.639891182 7.236633575 7.578867577 7.785544294 7.663651851 7.381437669 7.586122287 147677242 sigma_70 Stress Sigma factors Pelotomaculum thermopropionicum SI superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Pelotomaculum;species:Pelotomaculum thermopropionicum; 7.246844854 7.039784479 6.905879569 7.053336925 7.4591565 6.82846363 7.150679986 158107762 sigma_24 Stress Sigma factors Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.075475694 7.926249273 7.697015291 7.45254716 7.792843857 8.022695843 8.050517512 7.805960813 7.746421677 104780602 NirB Nitrogen Assimilatory N reduction Pseudomonas entomophila L48 9.007177867 9.178535627 8.885545961 255107960 sigma_24 Stress Sigma factors Sideroxydans lithotrophicus ES-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Sideroxydans;species:Sideroxydans lithotrophicus; 7.311212515 7.325060042 7.006483372 6.795849343 7.171794778 157411444 napA Nitrogen Dissimilatory N reduction uncultured prokaryote 8.029143428 7.357483716 8.067384581 7.812924305 7.337423582 7.832752454 8.033054326 167071400 phn Organic Remediation Herbicides related compound Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.868557172 7.813015184 7.790589119 7.915901734 7.913749567 8.100110419 8.003508435 7.385793627 255034431 amyA Carbon cycling Carbon degradation Starch Dyadobacter fermentans DSM 18053 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 8.266909635 8.7275786 8.463846667 8.729398346 9.204090485 8.413691805 8.654198583 8.699254227 116230021 silC Metal Resistance Silver Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 7.868370871 7.536933074 7.191794968 7.300916659 7.099263552 7.519760936 7.441109452 7.331518515 7.225944599 89513024 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.363600241 7.356935182 7.369390078 7.333321285 7.312865926 7.806140443 7.33961586 7.43322358 7.580222533 268590428 proX Stress Osmotic stress Providencia rettgeri DSM 1131 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rettgeri; 6.997403155 7.173317351 212539289 glx Carbon cycling Carbon degradation Lignin Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.402500337 7.320086962 6.956406383 7.401958344 7.594500297 219965904 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.471592495 7.581939623 7.574041226 7.427821651 7.979247415 7.895792818 7.838705043 7.931089698 161381058 hly virulence hemolysin Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 7.108056218 7.283868139 7.318024449 6.958238001 148848285 sigma_24 Stress Sigma factors Bacillus sp. SG-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.729112098 7.852374987 7.724327743 7.509329065 7.583539786 271502025 pilin virulence pilin Dickeya dadantii Ech586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 7.916255719 6.95842207 7.258986291 7.303774314 7.832187522 157368723 obgE Stress Radiation stress Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 7.814999911 8.072686497 8.149658528 7.504675808 8.209339712 8.123097061 8.264009967 8.456816976 7.509044888 237905066 Tet Antibiotic resistance other Uncinocarpus reesii 1704 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 7.396522591 7.36362321 7.052370266 7.282354336 7.68984403 7.173416177 7.256157543 7.411591169 108462344 sigma_24 Stress Sigma factors Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 7.890545201 7.690100897 7.888020944 7.826980754 8.234769196 8.287279676 8.020773011 7.940238644 121713438 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7.84880405 8.022113151 7.732557062 7.172516908 7.894540222 7.880706991 7.447324637 7.472417053 7.745636184 167949417 sigma_70 Stress Sigma factors Endoriftia persephone 'Hot96_1+Hot96_2' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Endoriftia;species:Endoriftia persephone; 6.664061376 7.081958852 7.400148325 7.522699391 255106296 pstA Stress Phosphate limitation Thalassiobium sp. R2A62 7.15602821 7.119991233 45272465 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 6.892854967 7.338398862 7.087943898 7.513736909 119958832 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 7.199400542 7.59715444 94497126 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Sphingomonas sp. SKA58 7.563363473 7.71556039 7.272754963 7.707047323 7.869245648 7.625090086 7.399497659 91773288 dnaK Stress Heat shock Methanococcoides burtonii DSM 6242 7.24752054 7.265783541 7.071128416 6.474481201 7.315505033 119494283 iro virulence Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 7.25989957 7.351496083 7.433480271 7.184735857 6.91954335 7.850648082 7.209003782 7.16434839 7.247599694 218211741 cda Carbon cycling Carbon degradation Starch Clostridium hylemonae DSM 15053 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 7.69018064 7.51697679 7.226968779 7.373927887 7.387112284 7.851498238 7.49865649 7.211092638 7.41401208 87308491 ArsC Metal Resistance Arsenic Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 7.414331447 7.379223618 6.83005227 6.789612857 7.387268928 3851175 oxyR Stress Oxygen stress Pectobacterium carotovorum superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium; 7.751729945 7.472602208 7.259321888 7.914627119 8.51253325 8.408448017 8.316990574 8.337835568 13815964 copper_resistance_gene Bioleaching Metal Resistance Sulfolobus solfataricus P2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus;species:Sulfolobus solfataricus; 6.669120346 7.424206893 6969402 mnp Carbon cycling Carbon degradation Lignin Amylostereum areolatum 7.802594053 7.465098122 7.826955556 7.672170783 7.814164881 7.760053458 8.289766134 229363931 cytochrome Energy process Energy process Pseudomonas fluorescens SBW25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.375738847 7.647679065 7.400383182 7.379848172 7.385372298 7.835195209 7.310268291 7.131774578 7.23830105 40253015 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.82443561 7.702899138 7.804358373 7.550804188 8.573153591 8.061096037 8.04101061 7.73582523 8.2771415 70981548 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 7.833085402 7.898655473 7.683069274 7.871961869 7.771525766 7.97830386 8.080818095 7.731015804 7.43138572 260221187 B_lactamase_C Antibiotic resistance Beta-lactamases Curvibacter putative symbiont of Hydra magnipapillata superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 7.332752734 7.275298132 7.582416489 7.488424553 7.784003342 8.043680456 8.360776719 7.707634689 37726819 dsrA Sulphur sulfite reductase uncultured prokaryote 8.118457678 8.171364942 8.217219336 7.654150753 7.925704127 8.214548186 7.889978983 27372311 mer Metal Resistance Mercury Acidithiobacillus ferrooxidans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus; 7.532159256 7.208758428 7.24480901 7.199522702 7.369289953 7.668974732 7.558294371 7.358095358 7.489972731 211999890 groEL Stress Heat shock Schizosaccharomyces japonicus yFS275 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Schizosaccharomycetes;order:Schizosaccharomycetales;family:Schizosaccharomycetaceae;genus:Schizosaccharomyces;species:Schizosaccharomyces japonicus; 7.527145786 7.39631442 7.284391226 7.221056649 7.290583139 7.497645334 7.40595721 7.427998035 7.561574325 255319457 sigma_32 Stress Sigma factors Acinetobacter radioresistens SK82 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter radioresistens; 7.486121992 7.59302021 7.554671523 6.96385726 7.113397272 158334326 Catechol Organic Remediation Aromatics Other aromatics Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;genus:Acaryochloris;species:Acaryochloris marina; 7.21156054 7.213476468 7.259593492 6.943447073 7.573990624 7.122099776 7.203723749 67921848 clpC Stress Protein stress Crocosphaera watsonii WH 8501 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Crocosphaera;species:Crocosphaera watsonii; 7.443043193 7.558324454 7.288119756 6.914931407 7.440919689 7.74723045 7.479718712 7.444038278 7.460693077 116621407 exaA Organic Remediation Chlorinated solvents Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 8.178171835 7.960841743 8.375296471 7.947497865 8.483071896 8.339112173 8.174817732 8.313269407 228270955 glnA Stress Nitrogen limitation Staphylococcus hominis SK119 7.465427493 7.114585177 6.944930314 7.293561034 150258152 ChrA Metal Resistance Chromium Victivallis vadensis ATCC BAA-548 superkingdom:Bacteria;phylum:Lentisphaerae;family:Victivallaceae;genus:Victivallis;species:Victivallis vadensis; 7.551574064 7.477842252 7.719028487 7.735444914 7.743829219 223019594 catB Organic Remediation Aromatics BTEX and related aromatics Rhodococcus erythropolis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7.412109849 7.664059121 7.726058317 7.781397214 7.473153227 8.053077661 7.536703035 7.332995906 7.369428577 126668054 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 7.361942659 7.635718733 7.820974628 7.536602492 7.878508479 10639706 Fe_S_cluster_binding_protein Bioleaching Electron transport Thermoplasma acidophilum;Thermoplasma acidophilum DSM 1728 6.950330032 6.884162983 6.925917103 7.475282553 150398310 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 7.536690954 7.48721918 7.555684055 7.11023538 7.466166137 7.946395909 7.453308111 7.387454278 7.491338341 91708977 CopA Metal Resistance Copper Methylobacillus flagellatus KT 8.254487116 8.39863398 8.332844481 7.54275602 8.685764908 7.857057794 8.308823453 8.695935875 8.251869941 169812730 AceB Carbon cycling Carbon degradation others Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 7.439945045 7.401447339 7.152145564 6.986202192 7.603543829 157374310 cytochrome Energy process Energy process Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 7.616979704 7.042182748 7.189645277 6.88866841 7.553831692 7.169755568 6.932039971 7.525007084 188990785 iro virulence Xanthomonas campestris pv. campestris str. B100 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 8.309930979 8.215980136 8.049223683 8.067752679 8.026261329 7.978054415 7.925865572 8.208613317 259023139 pstB Stress Phosphate limitation Rhodobacter sp. SW2 7.472531478 7.400556538 7.428744598 7.448171729 7.033319977 229611240 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.548119679 7.489044646 7.348957235 7.419484459 7.075111234 7.254072834 7.456209926 190697815 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.075021444 7.395523863 7.438577329 7.056468539 7.092522356 7.269430345 7.170005282 7.408068609 196114014 pstS Stress Phosphate limitation Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 7.831882878 7.720701991 7.452243555 7.421552985 7.694114422 8.020345431 7.795749968 7.584749208 7.815983314 112463845 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.269720855 7.299737754 7.448607743 6.936476383 7.200475145 7.70162279 7.561973995 7.238041921 7.407022053 224824828 pstB Stress Phosphate limitation Lutiella nitroferrum 2002 6.92756633 6.924436196 149939152 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.479808183 7.661590173 7.712209299 7.885046453 7.646633518 7.947703591 8.095696308 7.582366638 46308008 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.342890806 7.50385059 7.110845243 219548604 alkK Organic Remediation Others Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.768119097 7.603173521 7.385384984 7.372186971 7.108751602 7.422036393 7.179822132 7.609376968 160875341 dmsA Organic Remediation Others Shewanella baltica OS195 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 7.623903928 8.138593873 8.396980385 54019377 merB Metal Resistance Mercury Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 8.434346437 8.194821694 8.323943764 7.61976581 8.41019521 7.712543633 8.118895655 8.144626148 8.378223725 146282666 trzN Organic Remediation Herbicides related compound Pseudomonas stutzeri A1501 7.424057192 7.502889647 7.678684695 7.11231307 7.323638885 7.751158231 7.274190663 7.279275226 7.213975115 71037870 alkK Organic Remediation Others Psychrobacter arcticus 273-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter arcticus; 8.163801074 7.890655143 7.871742455 7.827294073 8.225718102 8.29291358 8.342011686 8.420984315 254506759 AceA Carbon cycling Carbon degradation others Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.957600793 7.824173646 7.625842088 7.427042892 8.006522947 8.291388322 8.029041163 7.864604969 7.899996284 116804638 nasA Nitrogen Assimilatory N reduction uncultured prokaryote 7.734441409 7.425233777 7.54752793 7.503622253 7.724729553 7.658056488 7.674272494 153955664 gdh Nitrogen Ammonification Clostridium kluyveri DSM 555 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium kluyveri; 7.121767548 7.13620233 6.976109002 6.87347622 6.857879137 7.675913214 7.437966323 7.175911203 7.175377809 77390477 ArsC Metal Resistance Arsenic Rhodobacter sphaeroides 2.4.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 8.27584207 8.188609726 8.444203232 7.255691057 8.247268925 7.746115957 7.60315171 8.203173939 169846007 phenol_oxidase Carbon cycling Carbon degradation Lignin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 7.646883775 7.20937429 7.265018966 6.955717979 7.396623488 7.309898612 7.20552448 6.919142895 7.433324074 83318860 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.200607529 7.104426355 6.564285357 7.252794988 242389914 phenol_oxidase Carbon cycling Carbon degradation Lignin Lentinula edodes superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Lentinula; 7.309567831 7.190312469 7.342691956 6.628953632 7.47731447 7.038244236 6.843887568 6.801105431 156522869 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Aeromonas hydrophila superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas; 8.32373299 8.167967637 8.085316824 8.814989074 8.548903453 8.532790624 8.676003029 62084735 lysin Bacteria phage LYSIS Enterobacteria phage K11 order:Caudovirales;family:Podoviridae; 7.303377031 7.068671078 7.639406858 7.529907997 7.116292198 7.69886133 7.059546501 7.124831462 7.261250067 167651733 pstS Stress Phosphate limitation Anaerostipes caccae DSM 14662 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Anaerostipes;species:Anaerostipes caccae; 7.469187386 7.157336521 6.998575862 28851229 atzB Organic Remediation Herbicides related compound Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 7.323759501 7.956117679 7.876953215 8.046638483 7.273024757 8.091463683 7.642762108 7.865474289 7.858615461 247543881 sigma_70 Stress Sigma factors Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.376496357 7.360675417 7.039705932 7.718596907 17385542 narG Nitrogen Denitrification uncultured bacterium 7.131579739 7.456714457 7.279122864 6.934579456 7.792664891 260433174 glnA Stress Nitrogen limitation Silicibacter lacuscaerulensis ITI-1157 7.368336039 7.658818771 7.630962629 7.910176154 8.141080794 7.347456438 7.185109991 7.809038489 13517025 gyrB other category gyrB marine CFB-group bacterium MBIC04458 superkingdom:Bacteria;phylum:Bacteroidetes; 7.851346789 7.770579119 7.965517351 8.333401886 8.261166684 8.056622068 8.138498838 158321419 tutFDG Organic Remediation Aromatics BTEX and related aromatics Alkaliphilus oremlandii OhILAs superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus oremlandii; 7.153306557 7.182855117 6.963514299 7.480019885 209501456 bphC Organic Remediation Aromatics Polycyclic aromatics Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 6.985024276 7.084727268 7.143537912 6.968606508 7.142027568 6.98606501 6.82042763 7.174154148 111224189 nmoA Organic Remediation Aromatics Nitoaromatics Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 7.853672319 7.710460096 7.684840317 7.539642884 8.317544183 8.133312857 7.741612573 7.777730612 189202824 nagG Organic Remediation Aromatics Aromatic carboxylic acid Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7.252973587 6.877773301 7.196717606 7.409563821 6.755937956 7.542564932 7.149323006 7.071341633 7.113621529 113129379 Tet Antibiotic resistance other Aeromonas salmonicida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas; 7.339413734 7.060415241 6.943815333 159041816 CopA Metal Resistance Copper Caldivirga maquilingensis IC-167 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Caldivirga;species:Caldivirga maquilingensis; 6.839426999 7.417267089 112188394 pstB Stress Phosphate limitation Bacillus licheniformis 7.31509606 7.153310811 7.282134515 6.80583344 7.615847941 6.976589771 7.011453566 114316436 katE Stress Oxygen stress Granulibacter bethesdensis CGDNIH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 7.669636986 7.468208103 7.55991828 7.320618698 7.367701494 7.606699133 4633583 nosZ Nitrogen Denitrification uncultured bacterium 696G superkingdom:Bacteria; 7.783527114 7.764578577 7.66187424 7.503740722 7.332430946 7.809442096 7.498709298 7.560579302 42522114 iro virulence Bdellovibrio bacteriovorus HD100 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 7.408499335 7.694434026 7.400736988 7.111878737 7.580585765 7.740195226 7.566984524 7.397677195 7.652535745 83588987 pstB Stress Phosphate limitation Moorella thermoacetica ATCC 39073 7.757424006 7.658729791 7.566741038 7.08051018 7.706346905 7.821922277 7.873376615 7.525409181 224800913 xylA Carbon cycling Carbon degradation Hemicellulose Opitutaceae bacterium TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 7.329866038 7.44832169 7.680466876 7.687681756 7.166800906 7.660025053 7.457291112 7.091658943 148260383 ferredoxin_I Bioleaching Electron transport Acidiphilium cryptum JF-5 7.787433778 7.825018237 7.649227778 7.183276649 7.643793152 7.781757461 7.518394572 7.456257108 7.432414528 166365336 clpC Stress Protein stress Microcystis aeruginosa NIES-843 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 7.036366793 7.136535124 7.361220566 6.94160478 7.10108777 119693609 CopA Metal Resistance Copper Mycobacterium sp. KMS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.987739174 8.74649212 8.473236859 8.735912004 8.897958172 8.609399102 8.630142149 8.639754357 8.835572272 118696078 CadA Metal Resistance Cadmium Burkholderia ambifaria MC40-6 7.31791957 7.524054873 7.50025095 7.159595823 7.544277217 7.926870243 7.580641898 7.559808862 7.581575344 86749821 nhh Organic Remediation Aromatics Nitoaromatics Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.026186701 8.09458157 7.8578328 7.56951762 8.095870764 7.992320941 7.924022832 8.073808992 27657620 chnB Organic Remediation Other Hydrocarbons Arthrobacter sp. BP2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.442579527 7.255233431 7.161312034 7.177404502 7.686392874 7.494378111 7.286348399 7.443231014 116105135 sigma_70 Stress Sigma factors Lactobacillus casei ATCC 334 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus casei; 8.484405804 8.474905259 8.154342247 8.172236686 9.188266892 8.25657398 8.70181504 8.365479728 8.580510102 170724601 cytochrome Energy process Energy process Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 7.935369557 7.380953882 7.23989108 7.29154276 158307293 sigma_70 Stress Sigma factors Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;genus:Acaryochloris;species:Acaryochloris marina; 7.382347939 7.515269155 168699869 sigma_24 Stress Sigma factors Gemmata obscuriglobus UQM 2246 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata;species:Gemmata obscuriglobus; 7.938668402 7.531150118 7.546412787 7.613373691 7.99083559 7.871002394 7.593401623 7.947536205 83718002 CopA Metal Resistance Copper Burkholderia thailandensis E264 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 7.581808722 7.615368797 7.378032893 7.202045292 7.844003969 7.49857072 7.301255155 7.153494701 190013159 SMR_antibiotics Antibiotic resistance transporter Stenotrophomonas maltophilia K279a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 7.124316266 7.664001185 7.367373731 7.004952582 7.770987173 7.167956981 7.016246673 133778542 endochitinase Carbon cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 8.421877734 8.157122589 7.624792905 7.900555365 8.003626801 8.162298368 8.120200753 8.231673356 7.657036694 154174827 iro virulence Campylobacter curvus 525.92 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter curvus; 7.979094641 8.158492037 7.922297423 8.181756822 8.314786059 8.361527559 8.413940082 7.872834212 8.246076103 120865794 pilin virulence pilin Neisseria meningitidis FAM18 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria meningitidis; 7.472156911 7.3973604 7.315742149 7.230488467 7.246685652 171990223 amyA Carbon cycling Carbon degradation Starch Exiguobacterium sibiricum 255-15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 6.633510645 7.04029851 87299421 gyrB other category gyrB Enterococcus faecium superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus; 7.232842251 6.843874462 7.102219591 7.258273287 6.856244192 159890585 AceA Carbon cycling Carbon degradation others Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 7.227346368 7.205036311 7.499786722 7.337086683 7.002435959 7.015287889 7.477841857 145213986 CadA Metal Resistance Cadmium Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 9.727998846 9.584127899 9.290361384 153094078 merP Metal Resistance Mercury Mannheimia haemolytica PHL213 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Mannheimia;species:Mannheimia haemolytica; 7.247592551 7.177239966 6.98701391 7.557800333 184191707 silC Metal Resistance Silver Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.300030538 7.53432939 7.906803258 7.005550302 7.288092644 7.401976232 8.034661313 85671680 ZntA Metal Resistance Zinc Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.218653237 7.42098568 7.564059748 7.345562713 7.319772269 7.610137581 7.619685931 7.691582665 7.563943132 229789432 amyA Carbon cycling Carbon degradation Starch Abiotrophia defectiva ATCC 49176 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Aerococcaceae;genus:Abiotrophia;species:Abiotrophia defectiva; 7.055457161 7.064244638 6.770399395 6.500785937 7.500100849 6.924284961 7.542588923 169242449 nmoA Organic Remediation Aromatics Nitoaromatics Mycobacterium abscessus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.019990713 8.300099924 8.102210259 7.998452544 8.101109678 7.997300491 8.055849808 8.355126434 255006368 hrcA Stress Heat shock Staphylococcus aureus subsp. aureus Mu50-omega superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus aureus; 6.945871291 7.170665043 197715296 TerD Metal Resistance Tellurium Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 8.297003702 8.37354555 8.085663232 8.086651154 8.056786649 8.023737924 7.995429493 8.136974328 8.082841334 87201064 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 8.113566978 8.032834239 7.95161717 7.530988451 8.146898434 7.94744804 8.083196781 8.066040655 8.117606585 167856113 glnA Stress Nitrogen limitation Haemophilus parasuis 29755 7.354051037 7.309143791 119513080 pstB Stress Phosphate limitation Nodularia spumigena CCY9414 7.044186324 7.082447339 90903253 aoxB Metal Resistance Arsenic uncultured bacterium superkingdom:Bacteria; 7.444067193 7.599311983 7.19414443 7.15750474 7.94141366 7.321674642 7.206531002 7.354835954 169349968 CopA Metal Resistance Copper Clostridium spiroforme DSM 1552 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichi;order:Erysipelotrichales;family:Erysipelotrichaceae;species:Clostridium spiroforme; 7.079770833 7.08858728 6.702768526 7.232405895 49523483 phenol_oxidase Carbon cycling Carbon degradation Lignin Rigidoporus microporus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Rigidoporus; 6.760495517 7.42847053 221088479 AceA Carbon cycling Carbon degradation others Geobacillus sp. Y412MC61 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.119677331 7.431384854 7.676189588 7.667799519 7.072514484 7.136553046 7.293023779 7.605456817 260087185 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 7.399627589 7.652094225 62468064 bco Organic Remediation Aromatics Aromatic carboxylic acid uncultured bacterium superkingdom:Bacteria; 7.088250602 7.058965953 7.387437843 7.513845732 6.495048744 7.030813276 6.927915709 7.257342119 99078285 cellobiase Carbon cycling Carbon degradation Cellulose Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.791368098 7.854243739 7.898726511 7.338831073 7.467088916 7.912546703 7.363635504 7.613692341 7.948265523 221080855 nitA Organic Remediation Aromatics Other aromatics Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 7.702774194 8.331578678 7.796986916 7.761061789 8.073361902 8.125890771 8.184093575 7.892348162 7.835401765 120589257 pcc Carbon cycling Carbon fixation Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 7.926059367 7.728993051 7.341351131 7.646341041 7.774297346 7.696307202 7.730233977 7.521811185 239909819 ABC_antibiotic_transporter Antibiotic resistance transporter Thermococcus gammatolerans EJ3 7.922847262 7.964576599 8.202486684 7.857822626 7.513230838 7.926723906 7.860598911 8546936 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.131818944 7.935849963 7.768167644 7.640473006 8.228310647 7.901309632 7.971228807 7.927897499 7.865081276 67088243 pulA Carbon cycling Carbon degradation Starch Azotobacter vinelandii AvOP 7.880872119 7.711897232 7.82962349 7.847080187 7.973602688 8.182163348 7.970548728 8.114602289 153808020 ara Carbon cycling Carbon degradation Hemicellulose Bacteroides caccae ATCC 43185 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides caccae; 7.183712429 7.022265711 6.91511385 6.924387362 15156573 ArsC Metal Resistance Arsenic Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.152370633 7.234315419 7.420770377 7.420585524 7.110465908 7.924544565 7.410161721 7.428136905 7.804477437 256714595 pstA Stress Phosphate limitation Lactobacillus coleohominis 101-4-CHN 7.215225506 7.003592942 7.097497589 6.698992393 7.414105574 7.110196998 6.943023588 7.167485343 17134714 nreB Metal Resistance Nickel Nostoc sp. PCC 7120 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc; 6.515966739 7.464061213 117989243 nitA Organic Remediation Aromatics Other aromatics Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.639170377 7.131587449 7.485409811 7.772388718 7.166620324 7.932350605 7.137500378 7.281812027 7.70693527 790364 katE Stress Oxygen stress Bacillus subtilis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.057468127 7.136584595 7.312353323 7.204308529 7.487716982 254506884 nrfA Nitrogen Dissimilatory N reduction Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 6.964589372 7.094500685 90305587 CadA Metal Resistance Cadmium Coccidioides immitis RS superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides immitis; 7.477217062 7.127610146 7.119854619 6.789029343 7.02385926 7.36094424 165931693 sigma_70 Stress Sigma factors Chlamydia trachomatis L2b/UCH-1/proctitis superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Chlamydiaceae;genus:Chlamydia;species:Chlamydia trachomatis; 7.296908261 7.205946044 6.516777437 7.545123126 7.050125662 7.453398205 119857776 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.080996309 6.800997521 6.888311032 7.280155402 262037069 amoA Nitrogen Nitrification superkingdom:Archaea; 7.028010493 6.861448918 87281139 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.210832868 7.623749744 7.954456026 8.200769858 8.500546219 8.411869189 8.084018862 8.070076897 119193851 tftH Organic Remediation Aromatics Chlorinated aromatics Coccidioides immitis RS superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides immitis; 7.184657825 7.150284115 7.171123068 6.732815409 7.227950289 68515257 pulA Carbon cycling Carbon degradation Starch Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 7.965776883 8.051921459 8.081921093 8.583949867 7.683106183 7.794513756 8.093673616 8.442248405 219678063 linC Organic Remediation Pesticides related compound gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.527112563 7.152047604 147669958 Ni_Fe_hydrogenase Energy process Energy process Dehalococcoides sp. BAV1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.122500235 7.275847107 62944564 groEL Stress Heat shock Zymomonas mobilis subsp. pomaceae superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Zymomonas;species:Zymomonas mobilis; 7.462626094 7.342468062 7.791174971 7.778165161 7.184930056 7.92491363 7.47177229 7.487217359 7.718335253 163858928 czcC Metal Resistance "Cadmium,Cobalt,Zinc" Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 7.383842133 7.158096932 7.292262705 7.245316983 7.104704575 13815744 glnA Stress Nitrogen limitation Sulfolobus solfataricus P2 7.06561169 7.07663275 258586669 endochitinase Carbon cycling Carbon degradation Chitin Vibrio mimicus VM573 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 7.812475093 7.51237675 7.239172316 7.759063123 7.692370944 7.534547293 7.872596818 7.646125935 45443170 iro virulence Yersinia pestis biovar Microtus str. 91001 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia pestis; 6.992838036 7.341453333 44829055 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 6.926610168 7.12659841 197335093 NirB Nitrogen Assimilatory N reduction Vibrio fischeri MJ11 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Vibrio fischeri; 7.758964765 7.746424302 7.379960816 7.741996277 8.014310001 7.76361986 7.995195009 82570879 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.494195946 7.154694592 7.144851674 6.946821103 6.880982957 7.622236769 7.147599792 6.751378276 7.357373379 164709010 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 6.853852448 7.018743827 6.972200762 145240187 BpH Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8.232335428 8.143811713 8.252098371 7.061028588 8.499964065 7.731904071 7.743177247 7.472773162 256757684 ahpC Stress Oxygen stress Thiomonas intermedia K12 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas;species:Thiomonas intermedia; 7.407183956 7.272111246 7.395666054 7.000452761 6.836562015 7.547827722 7.527449673 7.421708867 7.469220217 170659022 fnr Stress Oxygen stress Methylobacterium radiotolerans JCM 2831 7.678929609 8.383012984 8.338935946 8.368656436 8.193371409 8.417745726 8.262842891 7.840676722 7.825241754 157373235 cytochrome Energy process Energy process Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 7.209337941 7.007920966 7.276626732 6.939774167 7.477556568 229379291 pstC Stress Phosphate limitation Oxalobacter formigenes OXCC13 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Oxalobacter;species:Oxalobacter formigenes; 6.891798585 7.089282822 7.653230672 7.318565628 7.247385374 227329469 iro virulence Pectobacterium carotovorum subsp. carotovorum WPP14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 7.14542346 7.265828659 7.238484412 7.189148942 7.475240391 115397195 pheA Organic Remediation Aromatics Other aromatics Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 8.269067139 8.328918539 8.209512528 8.73246405 8.517851262 8.572165974 8.532455366 8.334365883 20196833 dsrA Sulphur sulfite reductase Desulfobacula toluolica 7.156218231 7.007821184 7.071434612 126716777 mer Metal Resistance Mercury Roseobacter sp. CCS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.310081941 7.326952119 7.330048944 7.212664635 15613101 alkJ Organic Remediation Other Hydrocarbons Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 7.286943324 7.103377527 7.449218035 7.174234075 7.610559804 7.007382938 7.568236247 71731088 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Xylella fastidiosa Ann-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xylella;species:Xylella fastidiosa; 7.740253879 8.178433206 7.830821404 7.147927135 7.863395088 7.920876702 7.878850611 226097132 cydB Stress Oxygen limitation Brevibacillus brevis NBRC 100599 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus brevis; 7.128113473 6.911522674 21886778 pheA Organic Remediation Aromatics Other aromatics Acinetobacter radioresistens 6.978045679 6.801935674 7.362511928 257389187 endochitinase Carbon cycling Carbon degradation Chitin Halomicrobium mukohataei DSM 12286 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halomicrobium;species:Halomicrobium mukohataei; 7.998941062 7.766711715 7.576914823 7.470748334 8.067165694 7.937230616 7.881591004 7.670826381 7.821517805 121602001 glnA Stress Nitrogen limitation Bartonella bacilliformis KC583 7.472734705 7.707101843 7.534916883 7.488822704 7.301607919 7.222314214 1001781 ppk Phosphorus Phosphorus utilization Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 7.931083718 7.934630188 7.881755735 7.593889299 7.805238723 7.402439909 7.27772392 7.636629665 83724922 atzA Organic Remediation Herbicides related compound Ralstonia solanacearum UW551 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 7.133084874 7.071564787 6.972935101 6.98449246 7.31504377 160429129 amyA Carbon cycling Carbon degradation Starch Clostridium phytofermentans ISDg superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium phytofermentans; 7.102631886 6.925961909 7.34815079 156742832 pcc Carbon cycling Carbon fixation Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 7.145475458 7.090510007 7.094823299 6.953686523 7.400589157 119382766 hrcA Stress Heat shock Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 7.457166386 7.498641306 259648443 proV Stress Osmotic stress Lactobacillus rhamnosus GG superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 8.543933773 8.501603093 8.385207286 8.69419703 9.030254815 8.694866981 9.211606811 8.846205126 8.989294384 193214363 sox Sulphur Sulphur oxidation Chloroherpeton thalassium ATCC 35110 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chloroherpeton;species:Chloroherpeton thalassium; 7.131741922 7.139149742 6.899775437 7.048822371 7.376500643 116695672 alkK Organic Remediation Others Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 6.728766273 7.358031876 6.780297519 6.790503975 84685795 sigma_24 Stress Sigma factors Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.920337037 8.239810366 7.679451236 7.342226826 158436054 CopA Metal Resistance Copper Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 7.134990667 7.142278535 7.682762567 6.988964952 7.385122907 262219491 iuc virulence aerobactin Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;species:Grimontia hollisae; 7.142196519 7.297746245 154251211 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 7.39271775 7.73620872 7.821709565 7.864291899 7.646379138 7.717400498 7.539817081 7.843539682 7.990890008 116205994 phenol_oxidase Carbon cycling Carbon degradation Lignin Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 8.571834447 8.47109019 8.078076707 8.602662381 8.535032742 8.243284369 8.234754977 8.024979275 7.95403041 124520870 MFS_antibiotic Antibiotic resistance transporter Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 7.130988312 7.034512493 6.408930054 7.27424711 213969358 atzB Organic Remediation Herbicides related compound Pseudomonas syringae pv. tomato T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 8.127512495 7.499733735 7.184722736 7.551710536 7.543437282 7.253141261 7.521707787 7.267862402 223038751 obgE Stress Radiation stress Campylobacter rectus RM3267 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter rectus; 7.373823095 7.392602911 7.287021963 6.839485022 7.280872101 7.863098679 7.354134925 7.303901603 7.479835326 146450627 tfdA Organic Remediation Aromatics Chlorinated aromatics Lodderomyces elongisporus NRRL YB-4239 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Lodderomyces;species:Lodderomyces elongisporus; 7.204015437 6.909981093 7.144315813 6.695570525 7.326206516 6.886562381 7.255354022 19421883 PceA Organic Remediation Others Desulfitobacterium hafniense 8.055045578 7.887459894 7.708039187 7.846118008 7.594712365 7.821777997 220920466 fnr Stress Oxygen stress Methylobacterium nodulans ORS 2060 7.633628186 7.742981714 8.228801112 7.596042309 8.142763158 8.168215284 7.948008587 7.955768287 145221416 gyrB other category gyrB Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 7.780245188 7.426690028 7.654018245 7.372723181 7.404710893 7.683115072 7.728262966 7.613343503 7.572072364 112803984 glnA Stress Nitrogen limitation Campylobacter curvus 525.92 7.351284098 7.44271683 7.635352554 7.454838542 7.409040581 7.860359611 7.625823249 7.655847284 7.630556011 262407084 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Bacteroides sp. 2_1_22 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 7.927383458 8.191217859 7.654805281 7.154531987 7.816214856 7.849269006 7.557315591 126732557 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 8.221443864 7.91521154 7.553677442 7.942190187 8.036383741 8.202342088 7.901084036 7.930213512 7.567087594 50871512 gyrB other category gyrB Pseudomonas stutzeri superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 6.676325576 7.394681094 74038490 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.089908561 7.21038224 7.129914215 73535172 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.642222032 7.598492703 7.65145374 7.368204782 7.441122655 7.67048997 7.42659105 7.500027417 7.599917008 227494728 oxyR Stress Oxygen stress Actinomyces coleocanis DSM 15436 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces coleocanis; 7.502588325 7.718790492 7.820525029 7.629427256 8.097109389 7.742690575 8.111679819 8.027582441 7.890311521 37200572 pstB Stress Phosphate limitation Vibrio vulnificus YJ016 7.503275882 7.357602467 7.167048679 6.900272451 6.890771531 7.659309198 7.099036851 7.323030034 110835430 sigma_32 Stress Sigma factors Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 8.203607914 8.027696026 7.794933911 8.364179516 7.61205147 8.081965733 90590216 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 7.329874374 7.184744754 7.217736846 7.426104833 7.770487536 193214557 fnr Stress Oxygen stress Chloroherpeton thalassium ATCC 35110 7.541677868 7.397505157 7.298975315 7.004969683 6.993352859 7.374370081 7.366520706 7.4974274 7262424 dsrA Sulphur sulfite reductase uncultured sulfate-reducer HMS-36 8.049955065 7.855814001 7.925280009 7.555578098 8.407717461 8.156950587 7.863752003 8.18462517 5578709 nahF Organic Remediation Aromatics Polycyclic aromatics Sphingomonas xenophaga superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 7.855288205 7.949789127 7.624752197 7.288972546 7.844900505 7.734901983 7.611237457 7.431332199 7.722290351 226913007 pstB Stress Phosphate limitation Clostridium sp. 7_2_43FAA 6.702942534 6.928599698 6.859820616 6.552053431 7.517028539 73533829 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.205727936 7.234934335 7.584601837 125716460 aoxB Metal Resistance Arsenic Arthrobacter sp. 15b superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.33557262 7.075778947 6.916293316 7.059560134 7.756603147 28870847 iro virulence Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 8.160524182 7.539244325 7.349891745 7.515892883 7.660287352 8.052104787 7.590722811 7.004063939 7.528878208 196156870 fnr Stress Oxygen stress Alteromonas macleodii 'Deep ecotype' 7.181065647 7.255245034 7.081602593 7.024910689 6.644587949 7.282518093 6.911583218 7.17416525 7.061185704 124023832 alkK Organic Remediation Others Prochlorococcus marinus str. MIT 9303 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 7.329371732 7.556020068 7.123656646 7.384556248 7.509315526 7.412959243 7.429677032 163841463 ppx Phosphorus Phosphorus utilization Renibacterium salmoninarum ATCC 33209 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Renibacterium;species:Renibacterium salmoninarum; 8.040139095 7.92653923 7.78299033 7.79160226 8.080022277 8.078178464 8.021396624 7.662564923 7.939826242 32140927 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. 2CBA 7.49029723 7.197561489 7.331321627 7.234812006 6.887936387 7.727254126 7.362070923 7.267472639 7.577673526 146304953 ABC_transporter_I Bioleaching other category Metallosphaera sedula DSM 5348 7.21917257 6.771263084 7.057148369 149230496 gyrB other category gyrB Pedobacter sp. BAL39 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter; 6.95429958 7.410050943 90309322 ureC Nitrogen Ammonification Edwardsiella ictaluri superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella; 7.068057762 6.995711396 6.757080911 7.254057357 10640818 FTHFS Carbon cycling Acetogenesis Thermoplasma acidophilum superkingdom:Archaea;phylum:Euryarchaeota;class:Thermoplasmata;order:Thermoplasmatales;family:Thermoplasmataceae;genus:Thermoplasma; 7.722315341 7.07956052 6.875163666 6.762233291 7.529913272 7.087815421 7.297252728 126716867 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. CCS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.474936019 7.666087742 7.491756437 7.055496816 7.405457561 7.625301845 7.596990332 221218530 iro virulence Escherichia coli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 7.379480549 7.50691239 7.308434504 6.962204411 7.702682303 7.199019133 7.252759173 7.236589215 119356699 sigma_24 Stress Sigma factors Chlorobium phaeobacteroides DSM 266 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 6.984017604 7.236540335 46389801 mcrA Carbon cycling Methane Methane production uncultured archaeon superkingdom:Archaea; 6.857280242 7.037255909 179346859 sox Sulphur Sulphur oxidation Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 8.104895573 7.91682633 7.871173658 7.798866968 8.375987762 8.227027676 8.213022418 7.809972481 8.10341339 212674091 grpE Stress Heat shock Desulfovibrio piger ATCC 29098 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio piger; 7.107140184 7.257185442 7.270525765 7.304245057 7.324724205 7.746241452 7.350154623 7.062945507 7.076195065 196166748 BchY other category chlorophyllide reductase uncultured bacterium superkingdom:Bacteria; 7.447227985 7.262453491 7.635481117 7.954513249 7.04916412 7.344258295 7.332755887 7.58232397 189203681 CopA Metal Resistance Copper Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7.859196523 7.7326649 7.724918026 7.342053388 7.232422713 7.682556127 7.577389156 7.725117532 110592501 CopA Metal Resistance Copper Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 7.46676719 7.525658401 7.535605452 7.331309083 7.238474777 7.551138488 7.324245376 7.586613331 17385468 narG Nitrogen Denitrification Paenibacillus sp. Lgg15.3 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.121021953 7.347393399 7.089576873 7.287849279 7.266964753 7.454180128 7.645580315 7.478075433 7.937408278 255004404 pstA Stress Phosphate limitation Anaplasma marginale str. Virginia 7.479856557 7.533706213 7.533323852 7.443201874 7.55271277 7.886507993 7.563539798 7.638692372 7.879471474 2209097 nifH Nitrogen Nitrogen fixation Cyanothece sp. ATCC 51142 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.205075635 7.075403061 6.928253772 254465145 grpE Stress Heat shock Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.288376977 7.489188209 7.34655707 7.297504625 7.531892707 7.603064959 123964624 CopA Metal Resistance Copper Prochlorococcus marinus str. MIT 9303 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 7.039988718 7.459216156 224011397 Tet Antibiotic resistance other Thalassiosira pseudonana CCMP1335 superkingdom:Eukaryota;phylum:Bacillariophyta;class:Coscinodiscophyceae;family:Thalassiosiraceae;genus:Thalassiosira;species:Thalassiosira pseudonana; 7.043267049 6.888322733 7.005515886 266623232 pcc Carbon cycling Carbon fixation Clostridium hathewayi DSM 13479 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 7.110462213 7.428610974 7.355053915 7.257853576 7.187568962 7.030110877 71143446 endochitinase Carbon cycling Carbon degradation Chitin Trichoderma atroviride superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Trichoderma; 7.641632813 7.541349075 7.318164866 7.049027777 7.386762535 7.410060784 7.130110127 7.492075655 260611399 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Vibrio metschnikovii CIP 69.14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio metschnikovii; 7.203572155 7.128672155 161786332 B_lactamase_A Antibiotic resistance Beta-lactamases Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 7.44085628 7.238131328 7.196497239 6.991033136 6.730275064 7.664167883 7.316613287 6.987126969 121583382 TerD Metal Resistance Tellurium Polaromonas naphthalenivorans CJ2 7.238876869 6.915234187 7.087492311 6.971728741 7.527938923 162568503 aoxB Metal Resistance Arsenic Burkholderia sp. YI019A superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.397024486 7.587748107 7.536391864 7.482609486 7.886574623 7.28218377 7.921927887 7.778223327 8.012548965 116634769 narG Nitrogen Denitrification uncultured bacterium 9.222064108 9.170110744 9.059380263 9.202521638 8.904134823 9.357129897 8.775941896 8.877509646 211957837 phn Organic Remediation Herbicides related compound Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 7.345238947 7.882886198 7.92100733 8.056727843 7.908730774 8.158314121 8.01080282 72494258 ppx Phosphorus Phosphorus utilization Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus saprophyticus; 7.197653332 7.022807041 6.818351237 6.597322853 7.473241754 14715448 catechol_B Organic Remediation Aromatics Other aromatics Pseudomonas putida 7.984114971 7.712932057 7.60516757 7.912754584 8.145425179 8.016475769 7.596387876 7.475833574 7.89193585 119766101 pilin virulence pilin Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 7.316662333 6.596607331 7.152752174 7.137417112 7.74411198 167752017 amyA Carbon cycling Carbon degradation Starch Alistipes putredinis DSM 17216 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes;species:Alistipes putredinis; 7.460832329 7.452556215 7.602936659 7.835309125 7.377499643 7.796575604 7.157783799 7.418235562 7.477760398 56785444 phenol_oxidase Carbon cycling Carbon degradation Lignin Trametes sp. 420 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 6.966160032 7.474529086 7.307968022 7.840649561 126629213 CopA Metal Resistance Copper Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 7.799838405 7.660744502 7.415726588 7.195521403 7.617419833 7.993489735 7.520624096 7.439218252 218548328 ABC_antibiotic_transporter Antibiotic resistance transporter Escherichia fergusonii ATCC 35469 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia fergusonii; 7.99895891 8.067537954 8.088584926 7.527262582 7.762766697 7.858612255 8.086835776 7.863432946 221635747 HcaACD Organic Remediation Aromatics Aromatic carboxylic acid Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 7.706782924 7.70320496 7.615876824 7.168969324 7.125179442 7.66700723 7.594950665 7.386282808 158523622 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.678824919 7.933260078 8.167099882 7.80174114 7.749510328 8.114117357 8.027220604 8.043793364 8.091923429 282766117 colonization_factor virulence colonization factor Bordetella pertussis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 7.323819498 7.836546931 8.011398036 7.865316287 7.963904681 28971839 akbF Organic Remediation Aromatics BTEX and related aromatics Sphingomonas sp. P2 7.552162616 7.34736329 7.181889348 7.498912247 7.367620533 7.290555898 7.397209978 7.417848152 7.520543354 108797491 chnB Organic Remediation Other Hydrocarbons Mycobacterium sp. MCS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.578722175 7.19687966 7.226271591 7.562956661 7.318290122 7.497295128 7.661578896 76874621 oxyR Stress Oxygen stress Pseudoalteromonas haloplanktis TAC125 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas haloplanktis; 6.964787535 7.043477531 45657567 sigma_70 Stress Sigma factors Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira interrogans; 7.182436296 7.177101027 7.028133861 7.192602746 7.226468452 108460936 cydA Stress Oxygen limitation Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 8.459370273 8.555248807 8.600709334 8.865724767 8.437346635 8.490998259 8.823455658 68239761 dsrB Sulphur sulfite reductase Prosthecochloris aestuarii DSM 271 7.836342652 7.815048472 7.742790886 7.654569892 8.147762676 8.353763059 7.869787588 7.913789991 8.051893931 77378749 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.85288065 7.689230733 7.620581477 7.728446819 8.114894326 7.726386169 7.505853984 7.370563646 111618054 ppx Phosphorus Phosphorus utilization Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 7.945636959 7.842214203 7.886791944 7.624688323 8.378738037 8.025620866 8.261409859 8.183855572 8.147409425 29833758 pimF Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 8.534621429 8.356404009 8.107024731 8.056057591 8.377898155 8.39596064 8.32466814 7.899451719 8.105886609 88802440 nifH Nitrogen Nitrogen fixation Polaribacter irgensii 23-P superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Polaribacter;species:Polaribacter irgensii; 7.11915303 6.883888076 111614030 tftH Organic Remediation Aromatics Chlorinated aromatics Verminephrobacter eiseniae EF01-2 7.324973094 7.327149185 7.299715197 6.967790412 6.993341762 7.312249988 7.198896974 7.499980744 90954597 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.505261117 7.450216591 7.952707425 7.35465684 8.246283451 7.763096267 7.623930044 7.787114972 7339869 nifH Nitrogen Nitrogen fixation Acetobacterium woodii superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Acetobacterium; 7.311372181 7.342974067 7.494530865 7.125118275 7.103703872 7.908307946 7.552471278 7.19362319 7.974186851 84778343 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.322045009 8.33538597 8.167625168 7.727285537 8.351288957 8.082854911 7.92947257 8.076139525 7.594847607 88643146 dsrA Sulphur sulfite reductase uncultured prokaryote 7.55898711 7.277510096 7.065814699 7.165392656 7.782185465 7.356564163 7.263169411 7.217211113 254428976 hly virulence hemolysin Alcanivorax sp. DG881 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 7.446789696 7.402299495 7.500748667 6.943733231 6.93923811 7.314592926 7.054651695 7.232364091 7.32046988 269469113 sox Sulphur Sulphur oxidation uncultured SUP05 cluster bacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales; 7.330435048 7.362670538 7.354285126 7.423659358 7.152743015 110646515 narI Stress Oxygen limitation Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 7.331197804 7.272244613 7.533361435 7.067786621 7.053469427 7.139108382 7.192811747 7.355083755 77362268 dnaK Stress Heat shock Pseudoalteromonas haloplanktis TAC125 7.084188702 7.635993768 7.25277136 7.089899845 7.730376728 7.162495511 7.095451359 7.424147361 189436010 sigma_24 Stress Sigma factors Bacteroides intestinalis DSM 17393 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides intestinalis; 7.091209273 7.418322567 6.831104211 7.231213374 260648868 pstS Stress Phosphate limitation Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 7.960862306 7.299878584 7.465301313 8.058537884 7.568056232 7.737092827 7.840853983 7.778942199 214045510 phn Organic Remediation Herbicides related compound Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.893146434 7.733099055 7.744071982 7.72692338 7.349267779 8.316071874 7.394936194 7.607621161 7.499875147 157803364 dnaK Stress Heat shock Rickettsia canadensis str. McKiel 7.433913154 7.256010104 145410064 atzA Organic Remediation Herbicides related compound Caldicellulosiruptor saccharolyticus DSM 8903 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Caldicellulosiruptor;species:Caldicellulosiruptor saccharolyticus; 6.834138306 7.053369952 50425153 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Debaryomyces hansenii CBS767 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Debaryomyces;species:Debaryomyces hansenii; 7.019920116 7.207578111 6.752102403 7.415704441 6.840525456 7.506693925 90591777 mannanase Carbon cycling Carbon degradation Hemicellulose Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 7.980070606 8.143260801 8.17324246 8.149448472 8.536418726 8.183645299 8.324622866 8.24363073 7.836011008 242266244 pstA Stress Phosphate limitation Thermococcus sibiricus MM 739 7.673824468 7.655169095 7.607235312 7.307859104 7.850795357 7.28443698 7.801202425 91781191 akbD Organic Remediation Aromatics BTEX and related aromatics Burkholderia xenovorans LB400 7.449228968 7.412533115 7.402807595 7.769119719 7.57387341 7.950323278 7.393067928 7.583391365 7.455359212 66801951 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 7.912623784 7.86869003 7.706421721 7.571672551 7.87071236 7.86838725 7.620282059 7.823970265 7.87204773 25188164 narJ Stress Oxygen limitation Selenomonas ruminantium superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Selenomonas; 7.471821124 7.654916766 7.688506411 7.167584412 7.354246492 7.627069373 7.471962074 7.45184348 7.872040014 222438465 pcaG Organic Remediation Aromatics Other aromatics Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 8.616385929 8.179944584 7.880233774 8.604431753 8.766811153 8.537714106 8.235202638 104779320 gyrB other category gyrB Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 7.908245844 7.622626017 7.261232536 7.602158075 7.412903822 7.818070286 7.552406292 7.538991703 160937127 hrcA Stress Heat shock Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 7.308957015 7.30305474 6.595163451 7.437262819 227486592 amyA Carbon cycling Carbon degradation Starch Anaerococcus lactolyticus ATCC 51172 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Anaerococcus;species:Anaerococcus lactolyticus; 7.348854976 7.043584197 7.434282714 240860887 AceB Carbon cycling Carbon degradation others Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.758678932 7.729670681 7.533115566 7.667055987 7.852495018 8.086353129 7.801937381 7.448155919 7.4116646 156109308 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 8.321681375 8.068757059 8.006602658 7.679205357 7.882727896 85773848 nrfA Nitrogen Dissimilatory N reduction Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 7.400159391 6.886429217 7.003137963 7.268016034 154311244 pheA Organic Remediation Aromatics Other aromatics Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 7.017242594 6.9425241 7.357622827 228471202 pstB Stress Phosphate limitation Porphyromonas uenonis 60-3 7.67088737 7.542063101 7.514070628 7.171962335 7.649800117 7.800902116 7.529914948 7.451158752 7.868668747 76008686 dnaK Stress Heat shock Enterococcus faecium 7.090590696 7.234792947 110596913 sigma_70 Stress Sigma factors Chlorobium ferrooxidans DSM 13031 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium ferrooxidans; 7.18121111 7.439616981 7.523871843 7.508907489 7.535098732 7.874546206 7.712693747 7.441157556 7.731669014 56809467 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.426839673 7.292656264 7.251907538 7.103067171 7.003592775 7.617823409 7.192001512 7.157418793 7.306051211 107028359 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia cenocepacia AU 1054 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 7.390427983 7.413924996 7.730913973 7.416787576 7.14607641 7.145967395 7.341093593 7.407091912 68007406 CopA Metal Resistance Copper Exiguobacterium sibiricum 255-15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 7.697159398 7.44675624 7.660853683 6.925077595 7.206448471 7.260583483 227194809 cda Carbon cycling Carbon degradation Starch Lactobacillus ruminis ATCC 25644 7.745721926 7.552725281 7.442314901 7.472053799 7.496292635 7.591949775 7.594606001 7.614189785 189494774 clpC Stress Protein stress Chlorobium phaeobacteroides BS1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 6.857503823 7.115597036 84664732 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 9.556140639 8.970839399 9.042078305 83767284 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus oryzae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 7.793597514 7.437516819 7.342393091 7.702900086 160903148 amyA Carbon cycling Carbon degradation Starch Petrotoga mobilis SJ95 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Petrotoga;species:Petrotoga mobilis; 7.443854168 7.456192756 7.37602552 6.974030235 6.887804693 7.690330925 7.086281797 6.744039883 7.456074273 116812185 nifH Nitrogen Nitrogen fixation Clostridium sp. Kas107-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 7.240041024 6.962565908 6.96710471 77378467 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.651626985 7.712043894 7.597817723 7.606823268 7.378101511 7.769596841 7.843913957 156719038 Se Metal Resistance Selenium Hydrogenobaculum sp. Y04AAS1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenobaculum; 7.108643263 7.289138914 7.205250135 7.509350899 260553895 MATE_antibiotic Antibiotic resistance transporter Acinetobacter sp. RUH2624 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter genomosp. 13TU; 7.594969738 7.599429267 7.569059035 7.614016484 7.529577268 7.744089934 88857577 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Pseudoalteromonas tunicata D2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas tunicata; 7.323250901 7.415105801 7.964418385 8.089078972 7.616121472 8.131898102 7.50472846 7.441907864 7.784360639 90415670 MFS_antibiotic Antibiotic resistance transporter marine gamma proteobacterium HTCC2207 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.153862465 7.987375188 8.016416557 8.483415778 8.425371887 8.552330337 8.393655578 8.426995021 212672763 pbrA Metal Resistance Lead Desulfovibrio piger ATCC 29098 9.088592271 8.793672076 8.775600634 8.598130256 8.487133345 8.864191036 8.663643646 8.97622157 53793630 single_strand_annealing_protein Bacteria phage REPLICATION Flavobacterium phage 11b order:Caudovirales;family:Siphoviridae; 7.075388669 7.248954752 6.975995361 6.871034075 7.458659265 282879453 ppk Phosphorus Phosphorus utilization Prevotella buccalis ATCC 35310 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccalis; 7.627059795 7.30219843 7.488177685 7.286335232 6.86512081 7.411609723 7.537788331 7.494273023 242206137 ara_fungi Carbon cycling Carbon degradation Hemicellulose Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 7.354159517 7.338813416 7.655395203 6.961109121 6.88794463 7.565705268 7.037271274 6.95718676 7.419826952 148240431 obgE Stress Radiation stress Synechococcus sp. WH 7803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.267115855 7.41168861 7.746513544 7.675255139 7.182922325 7.98108406 211586841 nahF Organic Remediation Aromatics Polycyclic aromatics Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 7.691280826 7.929939922 7.840622204 7.951185085 7.803698899 8.075504454 7.860424544 8.023970364 7.878602273 238719401 ureC Nitrogen Ammonification Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 8.351523548 8.293801171 8.332846201 7.655297132 8.092195019 8.242932294 8.221558311 8.163940692 7.705179486 85837790 endochitinase Carbon cycling Carbon degradation Chitin Vibrio sp. MED222 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.022148112 7.835085356 7.984971378 8.266905718 7.849749779 8.405974916 7.768219274 7.73343559 7.948501816 257482775 MFS_antibiotic Antibiotic resistance transporter Pseudomonas syringae pv. tabaci ATCC 11528 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas amygdali; 7.271146498 7.1934596 7.32410851 7.3001789 7.36654514 7.914637901 7.704730084 7.624557775 7.445350281 218251760 ureC Nitrogen Ammonification Mitsuokella multacida DSM 20544 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Mitsuokella;species:Mitsuokella multacida; 7.197368827 7.034958766 7.107008447 139003717 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.384155954 7.157494017 7.313869597 7.477105746 7.767384748 7.318582462 7.465746231 7.496374923 206679302 bphC Organic Remediation Aromatics Polycyclic aromatics Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.889854815 7.789024715 7.856513761 7.701284058 8.168857273 8.164479975 8.228264318 7.998971587 8.164448078 225520839 obgE Stress Radiation stress 'Nostoc azollae' 0708 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena azollae; 7.005211336 6.930685949 71156192 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.154460229 7.956495145 8.209866354 8.464811515 8.097698664 8.364335394 7.860406154 7.908265901 8.055176652 172056791 amyA Carbon cycling Carbon degradation Starch Exiguobacterium sibiricum 255-15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 7.681628325 7.540860974 7.320403633 7.512060904 7.396148335 7.714578933 7.320665984 7.398038426 7.56189824 86141933 ZntA Metal Resistance Zinc Flavobacterium sp. MED217 7.219512453 6.96851823 7.281343506 6.672120053 6.892745655 1649043 cbb Bioleaching Carbon fixation Acidimicrobium ferrooxidans 7.235971231 7.592169242 7.900636038 7.90871686 6.987738095 7.6510571 7.646291658 73534217 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.534687252 7.562244433 7.698857996 7.996116552 7.3780392 7.403761248 7.687448385 7.856076965 68568424 bphA Organic Remediation Aromatics Polycyclic aromatics Sulfolobus acidocaldarius DSM 639 7.200069259 7.214946369 22213646 terminal_quinol_oxidase Bioleaching Electron transport Acidianus ambivalens 7.073343197 7.074844861 227114718 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 7.193536047 7.004337788 7.12782499 7.24938719 7.597609866 7.320035046 7.006889316 7.151386739 254950972 sigma_24 Stress Sigma factors Dyadobacter fermentans DSM 18053 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 7.150864352 7.329056655 7.184739994 6.992353427 6.823218384 7.368286117 6.778218418 7.25701998 213966039 AceB Carbon cycling Carbon degradation others Corynebacterium amycolatum SK46 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium amycolatum; 7.384155954 7.332688305 7.202486295 7.296712666 7.231699565 7.529122793 78222150 cytochrome Energy process Energy process Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 7.186061038 7.608018352 7.690263292 7.786762142 7.164974766 7.843793852 7.394811756 7.229932349 7.578742153 60476352 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 8.305409134 7.912011224 7.97745072 7.980045862 8.554464485 8.443105989 8.408546301 8.179788203 8.421209994 94311479 SMR_antibiotics Antibiotic resistance transporter Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 7.558044631 7.520437506 7.370882741 7.531138551 8.106058422 7.809219277 7.592599768 7.981899081 222056242 cytochrome Energy process Energy process Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 6.890197101 7.310647189 7.360736128 7.748630889 7.019285162 7.24445872 7.422576504 82741258 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Shewanella sp. W3-18-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 7.652016901 7.636622771 7.849791651 7.363831523 7.77010303 7.959332488 7.606716846 8.053223274 7.567837084 162417824 toxin virulence toxin Yersinia pestis Angola superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia pestis; 6.980513912 7.569519655 7.409137281 7.676015765 7.059945576 7.779683666 86604921 pilin virulence pilin Synechococcus sp. JA-3-3Ab superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.172586834 8.14773177 7.835842129 7.976249672 7.977441363 8.011982692 8.199227885 7.871604939 139003122 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.282868697 7.075332992 6.991130013 7.062112547 7.279313594 7.420090226 223558038 ara Carbon cycling Carbon degradation Hemicellulose uncultured bacterium URE4 superkingdom:Bacteria; 8.202312753 7.857694559 7.470913852 7.584156688 8.005644615 8.09734455 7.925695535 7.64520657 7.788750681 255341964 grpE Stress Heat shock Flavobacteriaceae bacterium 3519-10 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae; 7.243898358 7.607891491 7.397888423 6.627564796 7.400950768 7.722428419 269832035 endochitinase Carbon cycling Carbon degradation Chitin Vibrio harveyi 1DA3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 7.774420142 7.509751042 7.394677648 7.848286119 7.727327515 7.791628274 7.423490832 6.937561448 212634281 AceB Carbon cycling Carbon degradation others Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 7.734889483 7.493799265 7.410465567 7.611697558 7.70693994 7.696630548 7.501722115 255258529 sox Sulphur Sulphur oxidation Sideroxydans lithotrophicus ES-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Sideroxydans;species:Sideroxydans lithotrophicus; 7.956732575 7.727732609 7.662568424 7.479901983 7.807918921 7.735529856 7.957465326 7.776420892 84684656 grpE Stress Heat shock Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.29379236 7.563808964 7.228855775 6.794161212 7.295257063 7.409801236 7.318698425 7.50155392 11545315 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 7.690523278 7.509606904 7.764901675 7.634574742 7.574581877 7.611196183 7.737884204 7.930324268 61808040 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.052307374 7.795376765 8.031431806 8.204199047 7.808928562 8.232711101 7.885545397 7.743828021 271964962 sigma_24 Stress Sigma factors Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 8.005045619 7.96753896 8.101826091 8.332565554 8.25951583 8.548894215 8.60764714 8.463930047 119353807 aclB Carbon cycling Carbon fixation Chlorobium phaeobacteroides DSM 266 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 7.456033736 7.371523403 7.276276707 7.067625012 7.58839775 7.785452046 7.788680074 7.518287617 7.493004973 224518974 sigma_24 Stress Sigma factors Bacteroides cellulosilyticus DSM 14838 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 7.298267259 7.416957829 7.278971533 6.888843266 7.558321716 69302242 CODH Carbon cycling Carbon fixation Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.903135161 7.454763673 7.568183662 7.343129095 7.201383849 8.172272893 7.611614703 7.039220111 7.46353536 209873754 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 7.227401572 7.470826889 7.520126521 7.39241366 7.224818966 7.712691809 7.194262103 7.237201903 7.205511452 247544132 cap virulence capsule Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.98620041 7.687148221 7.445391262 7.783509779 7.74071678 8.006499249 7.670837782 7.360245514 7.794830768 262261069 srt virulence surface protein Streptococcus sp. 2_1_36FAA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 7.3220613 7.121658119 7.101857013 6.996670199 88866014 rd Organic Remediation Chlorinated solvents Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 8.028018748 7.278845613 7.654236225 7.329593907 7.39007571 109646667 ppx Phosphorus Phosphorus utilization Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 7.485819895 7.411324226 6.959352438 6.984164166 37524994 tfdA Organic Remediation Aromatics Chlorinated aromatics Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 7.675539449 7.524683708 7.451277008 7.02293278 6.839866035 7.603319791 7.522197905 7.31928105 7.771589498 77640547 nrfA Nitrogen Dissimilatory N reduction Alkaliphilus metalliredigenes QYMF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus metalliredigens; 7.603160814 7.675666038 7.625172952 7.225055867 7.486458042 7.79399436 7.314664011 7.818766961 7.423291538 238871775 pstB Stress Phosphate limitation Eubacterium eligens ATCC 27750 7.145847555 7.160355609 7.411264133 7.654599379 148520521 trzN Organic Remediation Herbicides related compound Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 7.976628097 7.919973247 8.114098458 8.900831713 7.670659517 8.605465748 8.042750741 8.109585107 8.135566837 157837416 Catechol Organic Remediation Aromatics Other aromatics Chromohalobacter sp. HS2 7.464774921 7.493222831 7.736659839 8.207422042 7.39738031 8.031068359 7.706146664 7.919929241 183176731 NiR Nitrogen Assimilatory N reduction Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 7.995816656 7.861391495 7.734986956 7.440841217 8.104684599 8.056808268 8.024513706 7.555973813 7.910497491 229823593 ctsR Stress Protein stress Catonella morbi ATCC 51271 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Catonella;species:Catonella morbi; 7.757733215 7.75656756 7.083256856 7.100921018 7.669920822 7.429768837 147886140 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 7.708141131 7.858629794 7.696476575 7.746393373 7.667260215 7.954760391 7.57820526 7.849366977 7.674405438 219868663 Tet Antibiotic resistance other Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 6.931142471 7.252205938 6.795536196 6.69858006 7.558814503 6.984863475 6.786162863 84691221 ahpC Stress Oxygen stress Parvularcula bermudensis HTCC2503 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 7.346308553 7.122463659 6.991340531 7.056950419 238712029 SMR_antibiotics Antibiotic resistance transporter Yersinia rohdei ATCC 43380 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia rohdei; 8.035385727 7.857880981 7.781655981 7.641557472 7.746536595 8.00645391 8.065254771 7.928282537 8.181352356 222084782 pstB Stress Phosphate limitation Agrobacterium radiobacter K84 7.990245304 7.879350273 7.788400675 7.859410143 7.715122727 7.760055015 8.181288551 7.782839242 150958739 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.205398841 8.014249892 8.056905116 7.914752501 8.312952976 8.245478515 8.316576724 8.035751364 8.217736896 260877624 endochitinase Carbon cycling Carbon degradation Chitin Vibrio parahaemolyticus AN-5034 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.002852833 6.885934609 7.098426578 6.914401452 118502510 phoA Stress Phosphate limitation Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 6.953168273 7.246450379 40804942 phn Organic Remediation Herbicides related compound Pseudomonas stutzeri superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.054525081 8.014709549 8.101168699 7.803586339 8.102451774 7.800312785 8.09605217 8.327752237 8.084335946 86359150 cap virulence capsule Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 6.944902866 7.244320106 7.437173584 7.59321154 7.440332528 7.776673034 7.3539824 7.183637611 7.350653425 78363499 hrcA Stress Heat shock Thiomicrospira crunogena XCL-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Thiomicrospira;species:Thiomicrospira crunogena; 7.453379158 7.748160826 7.949387435 7.584248519 7.658387363 7.683532925 7.503851404 7.618041847 166364569 pstB Stress Phosphate limitation Microcystis aeruginosa NIES-843 7.838888651 7.631121928 7.481408515 7.230321995 7.705991055 7.854576703 7.612103768 7.599255831 7.744361779 168185708 tutFDG Organic Remediation Aromatics BTEX and related aromatics Clostridium botulinum C str. Eklund superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium botulinum; 7.036968294 6.523874824 6.919169021 15601305 TerC Metal Resistance Tellurium Vibrio cholerae O1 biovar eltor str. N16961 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 7.21487711 7.182690919 6.892632627 7.343292956 7.227485348 7.108980877 7.048453983 118424502 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.321398589 7.544282155 7.837182594 7.794065067 8.089291836 7.561757183 7.697267324 7.485001611 119391545 narG Nitrogen Denitrification uncultured bacterium 9.125795917 9.0570953 8.833749432 78169256 clpC Stress Protein stress Synechococcus sp. CC9902 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.761477647 7.428140389 7.27303757 7.21515049 7.453811871 7.497415223 7.505541919 7.441963536 160887952 mannanase Carbon cycling Carbon degradation Hemicellulose Bacteroides uniformis ATCC 8492 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides uniformis; 6.92519238 6.988403477 7.175879472 7.135812912 67902424 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.865777157 7.674465769 7.448447315 7.888178386 7.249839999 7.819554344 7.622447457 7.775547653 8.033405604 18312937 AceA Carbon cycling Carbon degradation others Pyrobaculum aerophilum str. IM2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum aerophilum; 7.284862357 7.249757971 7.236233621 7.234746864 6.83164651 7.649445544 206565453 cap virulence capsule Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 7.501899361 7.505088824 7.302237888 7.21895649 7.695400653 56908022 gyrB other category gyrB Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 7.07277095 7.0887713 7.436420394 6.829427434 7.012295163 7.560815839 5419982 phn Organic Remediation Herbicides related compound Rhizobium leguminosarum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 7.716627034 7.486697217 7.596686189 7.359604506 7.968677434 8.040944263 7.851432207 7.606166767 7.626002713 166089937 gyrB other category gyrB Microcystis aeruginosa NIES-843 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 7.857793532 7.912173901 7.628525353 7.429516678 7.666961921 7.891998984 7.777548876 7.842675102 7.509757885 66967048 xylA Carbon cycling Carbon degradation Hemicellulose Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.55102087 7.222793244 7.890216029 8.050925919 7.640580325 8.154479253 7.52280357 7.529493621 7.549996334 50119149 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Erwinia carotovora subsp. atroseptica SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 7.244430978 7.3738561 7.298225144 7.25713138 7.493626347 6.877650511 7.075884958 7.595177088 109452552 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.084642488 7.848397092 7.130608863 7.430886825 229807982 pstB Stress Phosphate limitation Collinsella intestinalis DSM 13280 8.140303381 8.144946281 8.056878787 7.968066609 8.469390485 7.881484612 8.157138464 8.100802537 7.871162158 196203066 hrcA Stress Heat shock Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 6.990750944 7.12243421 6.739070973 6.98193425 7.50043276 239911098 pstB Stress Phosphate limitation Thermococcus gammatolerans EJ3 7.689772062 7.883197178 7.580816636 7.571277282 7.559416815 7.949444417 7.572724017 7.368059672 15679719 pstS Stress Phosphate limitation Methanothermobacter thermautotrophicus str. Delta H superkingdom:Archaea;phylum:Euryarchaeota;class:Methanobacteria;order:Methanobacteriales;family:Methanobacteriaceae;genus:Methanothermobacter;species:Methanothermobacter thermautotrophicus; 7.676062556 7.739487645 94986960 sigma_70 Stress Sigma factors Lawsonia intracellularis PHE/MN1-00 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Lawsonia;species:Lawsonia intracellularis; 7.16929856 7.152502418 6.888659182 7.134291952 78357178 hydrogenase Energy process Energy process Desulfovibrio desulfuricans G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 7.650515394 7.99448754 8.110707113 8.455426342 8.031819169 8.566114942 7.790268654 8.13683111 7.890576208 70672977 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.297836774 7.227288227 7.29250899 7.078022529 6.940643579 7.609371228 7.089818619 7.111609145 7.262333686 146402133 thioredoxin Bioleaching Sulphur Acidiphilium cryptum JF-5 7.193579744 7.218033531 7.084339771 6.562839714 7.698511729 6.804221318 7.365252428 ieghzo270 hzo Nitrogen Anammox 8.701991322 8.601545531 8.474764774 8.251799318 8.155910374 8.480439077 8.257803174 8.67643562 149129194 pstB Stress Phosphate limitation Bacteroides caccae ATCC 43185 7.267150808 7.241807061 6.982521456 6.782458381 7.415534517 169600661 katE Stress Oxygen stress Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 7.23132609 7.664175706 52306985 gyrB other category gyrB Mannheimia succiniciproducens MBEL55E superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Basfia;species:Mannheimia succiniciproducens; 7.30520469 7.044771238 7.417340181 6.884286576 6.720622523 7.648062943 113949673 endochitinase Carbon cycling Carbon degradation Chitin Shewanella baltica OS195 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 7.765437507 7.830779231 7.609255454 7.608411457 7.816400246 8.227509309 8.223404458 7.889488381 7.375234105 167354148 CopA Metal Resistance Copper Shewanella halifaxensis HAW-EB4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella halifaxensis; 7.109038185 7.000124855 218550850 xylA Carbon cycling Carbon degradation Hemicellulose Escherichia fergusonii ATCC 35469 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia fergusonii; 7.798220748 7.45673731 7.53488411 7.431064381 7.591819022 7.668627251 7.391636852 7.536816047 75909274 fnr Stress Oxygen stress Anabaena variabilis ATCC 29413 7.501041029 7.505808809 7.405421847 7.651578445 6.951908489 7.278154226 7.310397741 109627224 ureC Nitrogen Ammonification Haloquadratum walsbyi DSM 16790 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloquadratum;species:Haloquadratum walsbyi; 7.511720788 7.465765332 7.443056439 7.442895182 7.334107433 7.692574641 7.626572559 7.761210499 7.377131923 91684748 phn Organic Remediation Herbicides related compound Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.45795733 7.700609236 7.892353698 7.511908947 7.650354295 7.604771503 194016077 phoA Stress Phosphate limitation Bacillus pumilus ATCC 7061 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pumilus; 7.144144368 7.188930022 7.154722504 7.572310022 7.092590568 6.991464931 7.375395078 268591156 katE Stress Oxygen stress Providencia rettgeri DSM 1131 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rettgeri; 7.891901366 7.523405948 7.504711628 7.212683696 7.761592548 7.528231233 7.374683861 7.542517678 7.603712161 167541278 mcrA Carbon cycling Methane Methane production uncultured bacterium superkingdom:Bacteria; 7.082275402 7.035282046 7.248948224 6.732582479 6.558066872 7.461957127 6.969121393 7.561152561 23013190 dsrA Sulphur sulfite reductase Magnetospirillum magnetotacticum MS-1 7.974097275 8.118879013 8.034619537 8.320787363 8.038339201 8.265289925 8.144907698 8.155234882 8.172148594 109452464 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.614354938 7.747406216 7.666871136 7.428887527 7.191463974 262371746 SMR_antibiotics Antibiotic resistance transporter Acinetobacter junii SH205 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter junii; 6.941247357 7.698990924 209695949 sigma_24 Stress Sigma factors Aliivibrio salmonicida LFI1238 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Aliivibrio salmonicida; 7.265606368 7.349527798 7.300573138 6.737810015 7.379796237 7.209647116 7.123935524 196248274 glnA Stress Nitrogen limitation Geobacillus sp. G11MC16 7.840374305 7.785073502 7.770656626 7.539088623 7.611019394 7.596341672 218167074 todF Organic Remediation Others Cyanothece sp. PCC 8801 6.786423136 6.849847366 54022446 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 7.423652082 7.310444135 7.943286449 8.023782808 7.635172664 8.164028375 7.553845945 7.745201892 8.107074913 227195630 pstB Stress Phosphate limitation Lactobacillus ruminis ATCC 25644 7.372476393 6.997912107 7.081035745 7.039902785 217977688 fnr Stress Oxygen stress Methylocella silvestris BL2 7.74501012 7.332129113 7.472732708 7.543538168 7.869701577 7.61025232 7.597747356 7.410857737 12667648 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium UMTRAdsr610-9 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 8.034837308 7.732330382 7.285037912 7.620496665 7.684056942 8.049071181 7.470748248 7.179453349 7.58213889 187926552 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 7.975719733 7.587487033 7.841652547 8.082603742 7.92441478 8.308684896 8.143585997 8.156671977 7.927326875 163812229 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 6.926742936 7.159180692 6.776507138 7.042179959 76058410 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.559517154 7.361954561 7.260847108 7.020241041 6.979601704 7.230759838 6.981489311 7.127406029 145241704 hdnO Organic Remediation Aromatics Heterocyclic aromatics Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.845751996 7.737279846 8.022927499 8.293262814 8.165082345 8.078947649 7.978484677 154423266 nagG Organic Remediation Aromatics Aromatic carboxylic acid Alcaligenes sp. NyZ215 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes; 7.948185265 8.233819827 7.95277832 7.710220874 8.032600156 7.956145141 8.157951059 8.110995748 8.139234418 260903948 glnA Stress Nitrogen limitation Brevibacterium linens BL2 7.19548081 7.466116037 7.868891226 8.220262169 7.995057702 8.259017471 7.883155523 7.5721984 7.851819697 159874714 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Carnobacterium sp. AT7 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Carnobacteriaceae;genus:Carnobacterium; 7.187289334 7.352021001 7.126551317 7.055669534 7.317659139 22298892 NiR Nitrogen Assimilatory N reduction Thermosynechococcus elongatus BP-1 7.551819159 7.60139258 7.586376565 6.962089024 7.404805462 7.370437246 7.817634493 209535840 Tet Antibiotic resistance other Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.273661948 7.065224233 7.316430303 6.991514979 7.865988488 94426207 ureC Nitrogen Ammonification Oceanobacter sp. RED65 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Bermanella; 7.852127993 7.481059175 7.111589185 7.158616023 7.444350618 7.842386256 7.584460821 7.85423255 119446938 pilin virulence pilin Alteromonadales bacterium TW-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales; 7.906161682 7.903347388 7.918668763 7.605372836 7.726109894 7.854916404 8.168802903 8.069862753 7.983872838 113898060 pcc Carbon cycling Carbon fixation Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 7.149460797 7.029797294 6272572 endoglucanase Carbon cycling Carbon degradation Cellulose Clostridium cellulovorans superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 7.869456028 7.748013232 7.676805697 7.689278519 7.605022794 8.024672638 7.72724233 7.694550623 7.620582533 474177 amyA Carbon cycling Carbon degradation Starch Staphylococcus xylosus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus; 7.053815198 7.175953094 7.423049256 7.010034865 7.288735077 83592230 TerD Metal Resistance Tellurium Rhodospirillum rubrum ATCC 11170 7.881134982 7.916510431 8.065295184 7.006054988 7.346565696 7.57246745 7.836602823 149911458 sigma_38 Stress Sigma factors Moritella sp. PE36 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Moritellaceae;genus:Moritella; 7.908827881 7.671821038 7.523122411 7.647565669 7.355727036 7.866796749 7.421886772 7.354756478 7.610025703 83648760 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 7.560943414 7.537056457 7.189661035 120600392 pilin virulence pilin Shewanella sp. W3-18-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 7.215792198 7.270760339 7.237296326 7.040723575 7.682176281 167781411 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira biflexa; 8.073858971 8.076077449 7.629884391 8.203429469 261346734 MFS_antibiotic Antibiotic resistance transporter Providencia rustigianii DSM 4541 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 7.560523417 7.860450101 7.648016816 7.430127485 7.64272594 7.772811513 7.64383555 7.528315845 7.374495156 32895196 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.035761995 7.549727219 7.90390906 8.212667032 8.627034574 8.533667271 8.081372929 8.180609 254468998 sigma_24 Stress Sigma factors beta proteobacterium KB13 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 7.693804799 7.484395124 7.305752721 7.125140077 7.171503567 7.701908031 7.4641174 7.157359847 7.382300728 260642725 fnr Stress Oxygen stress Bacteroides finegoldii DSM 17565 7.774317879 7.299885075 7.272885928 7.187675275 7.391426687 159102469 phenol_oxidase Carbon cycling Carbon degradation Lignin Malassezia globosa CBS 7966 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Exobasidiomycetes;order:Malasseziales;family:Malasseziaceae;genus:Malassezia;species:Malassezia globosa; 7.223956151 6.969190942 7.104756098 118049483 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.48113856 7.246781003 7.698284744 7.384719574 7.119150198 7.880675101 7.086451205 6.897154913 7.050459323 144898039 nosZ Nitrogen Denitrification Magnetospirillum gryphiswaldense MSR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 7.505982532 7.659507538 8.13796616 8.479321574 8.607786646 8.149340396 8.173991789 223690027 phoA Stress Phosphate limitation Desulfobacterium autotrophicum HRM2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium;species:Desulfobacterium autotrophicum; 7.857299821 8.013583725 8.02947333 7.454801945 7.831155724 7.793571833 7.81676538 8.028185002 62425325 ChrA Metal Resistance Chromium Brevibacterium linens BL2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium linens; 8.735793474 8.46390355 8.488871358 8.361981413 8.469602885 8.327987128 8.542613826 8.679167455 8.002600614 167597811 B_lactamase_A Antibiotic resistance Beta-lactamases Francisella philomiragia subsp. philomiragia ATCC 25017 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Francisellaceae;genus:Francisella;species:Francisella philomiragia; 7.44761789 7.333850703 6.970789612 6.885686907 229514049 pilin virulence pilin Vibrio cholerae TMA 21 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 7.359666918 7.323527099 6.897844932 7.577165529 13446757 nbzB Organic Remediation Aromatics Nitoaromatics Pseudomonas putida 8.22545703 8.028630337 7.95631016 8.089904459 8.286585212 8.170108553 8.047626544 8.085746175 163814469 dsrA Sulphur sulfite reductase Coprococcus eutactus ATCC 27759 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Coprococcus;species:Coprococcus eutactus; 7.204902605 7.072638804 255039940 lysin Bacteria phage LYSIS Bacillus phage Frp2 7.070749502 7.009409892 221069996 AceB Carbon cycling Carbon degradation others Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.706475281 8.698746826 8.370979022 8.615439636 9.054402805 8.775806981 8.789756623 8.967774181 262350411 amyA Carbon cycling Carbon degradation Starch Vibrio sp. RC586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.500418455 8.405846598 8.332476924 7.670494491 7.866963028 8.040043404 8.161317204 8.318472119 86571639 fnr Stress Oxygen stress Rhodopseudomonas palustris HaA2 8.04070185 7.93638839 7.238341531 7.717706778 7.558890971 7.910611451 7.517718158 221738233 pcaG Organic Remediation Aromatics Other aromatics Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 7.604874466 7.552982086 7.942868947 7.517322411 7.947256149 7.753855159 7.693121015 7.555483849 166086955 NiR Nitrogen Assimilatory N reduction Microcystis aeruginosa NIES-843 7.788392083 7.848873382 7.664355938 7.65901181 8.000657316 7.899640141 8.081094183 8.040591318 10039323 gyrB other category gyrB Flexibacter canadensis superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae; 7.290492063 7.348341593 6.863671598 7.654612796 7.04058384 6.739060459 7.619664946 163762154 ChrA Metal Resistance Chromium Bacillus selenitireducens MLS10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus selenitireducens; 7.121715809 7.19867942 6.989055896 7.103530816 7.555337128 7.068027138 7.233577748 260776661 phoB Stress Phosphate limitation Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 7.984322144 7.706056754 7.397873861 7.042544324 7.591101908 24373906 ZntA Metal Resistance Zinc Shewanella oneidensis MR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella oneidensis; 7.854559393 8.108977562 7.427591391 7.52369299 7.379549968 151362459 aclB Carbon cycling Carbon fixation Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 7.648634558 7.932270758 8.12814302 7.321011217 7.840756663 7.78167223 8.004974854 225024661 fnr Stress Oxygen stress Eikenella corrodens ATCC 23834 8.13300118 7.814412871 7.777313508 7.951417279 8.523586571 8.238279112 8.042567214 8.338665724 85720952 sigma_24 Stress Sigma factors Syntrophus aciditrophicus SB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Syntrophus;species:Syntrophus aciditrophicus; 7.554267506 7.564317114 7.270354289 7.483148071 7.423692198 7.773701384 7.56023208 7.623970818 7.495938201 37528483 ppx Phosphorus Phosphorus utilization Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 7.225387679 7.443769647 7.35546164 7.03718078 7.389123489 7.571974694 7.044737827 7.202064526 7.150726499 149811768 nifH Nitrogen Nitrogen fixation Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.930413265 8.167064875 8.543885525 8.783036793 8.025549238 8.615845567 8.065078747 8.013316722 8.147040231 116098326 amyA Carbon cycling Carbon degradation Starch Lactobacillus brevis ATCC 367 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus brevis; 7.160200903 7.206645192 118164360 CDH Carbon cycling Carbon degradation Cellulose Mycobacterium avium 104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 7.545053604 7.542373671 7.395395559 7.51076711 7.753521659 7.866829879 7.904317511 7.758857075 7.72359743 262080744 katE Stress Oxygen stress Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Haliangiaceae;genus:Haliangium;species:Haliangium ochraceum; 8.050246243 8.199387222 8.08770657 7.623481424 8.110398266 14022192 nhh Organic Remediation Aromatics Nitoaromatics Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 7.872320328 8.253537947 7.558562041 7.704875712 7.722712121 7.979214048 8.243943706 8.017614662 52629732 B_lactamase_C Antibiotic resistance Beta-lactamases Legionella pneumophila subsp. pneumophila str. Philadelphia 1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella;species:Legionella pneumophila; 7.620522196 7.719145353 7.919266171 7.591258274 7.561741134 160347661 SMR_antibiotics Antibiotic resistance transporter Lactobacillus helveticus DPC 4571 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus helveticus; 7.155591744 6.807175616 2865165 endochitinase Carbon cycling Carbon degradation Chitin Alteromonas sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas; 7.537676619 7.065969843 7.06872035 6.978456383 7.223485583 154509620 sigma_24 Stress Sigma factors Actinomyces odontolyticus ATCC 17982 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces odontolyticus; 7.536559655 7.227237169 7.396414178 7.27213413 6.873964119 7.821139285 30249270 obgE Stress Radiation stress Nitrosomonas europaea ATCC 19718 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas europaea; 6.906826646 7.184882205 222082132 nmoA Organic Remediation Aromatics Nitoaromatics Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 6.891785226 7.261672673 7.035298571 7.333114632 169627114 gyrB other category gyrB Mycobacterium abscessus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.377278709 7.383323164 7.194807857 7.200534006 6.791200626 7.735843732 7.085873099 7.281158319 75907142 dnaK Stress Heat shock Anabaena variabilis ATCC 29413 6.809676345 6.730660509 6.975757041 151368483 phenol_oxidase Carbon cycling Carbon degradation Lignin Hemimycena crispata superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Hemimycena; 7.906035252 7.615301221 7.428430181 7.306787152 7.6553778 7.759901616 7.889268982 218676612 MFS_antibiotic Antibiotic resistance transporter Vibrio splendidus LGP32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 7.080772106 6.8830636 7.161138742 187725776 CopA Metal Resistance Copper Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.280097967 8.157321954 7.900027684 8.026872375 8.591528285 8.22835122 8.414835329 8.1822922 8.389263445 146303304 ABC_transporter_I Bioleaching other category Metallosphaera sedula DSM 5348 7.236167904 7.166012343 7.18519763 6.986486031 6.782834551 14591297 atzA Organic Remediation Herbicides related compound Pyrococcus horikoshii OT3 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Pyrococcus;species:Pyrococcus horikoshii; 7.325903478 7.386264934 7.259345729 6.755736119 7.395369165 6.984951748 7.015117663 163803886 CopA Metal Resistance Copper Vibrio campbellii AND4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.737949212 7.560476763 7.545639358 7.606891051 7.312995057 7.433732163 7.356054396 6.937638654 146272481 glnA Stress Nitrogen limitation Pelotomaculum thermopropionicum SI 7.586496436 7.417380788 6.941509359 7.432295294 7.659862528 7.61175159 7.70567846 150864452 cpnB Organic Remediation Other Hydrocarbons Pichia stipitis CBS 6054 7.576893765 7.154368326 7.520680078 7.367795679 6.964127201 7.643405349 7.194038398 7.649190491 120599981 obgE Stress Radiation stress Shewanella sp. W3-18-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 7.046927472 7.169140145 164508115 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7.989242646 8.100082706 7.96781399 7.702948994 8.189943693 8.103925176 7.970833797 7.87881402 7.839407184 88187548 nifH Nitrogen Nitrogen fixation Methanospirillum hungatei JF-1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanospirillaceae;genus:Methanospirillum;species:Methanospirillum hungatei; 6.83413483 7.063045698 6.626599798 7.463036463 118752129 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Metallosphaera sedula DSM 5348 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Metallosphaera;species:Metallosphaera sedula; 7.677236575 7.401259512 7.462745382 197625807 fnr Stress Oxygen stress Cyanobium sp. PCC 7001 7.540305104 7.422155776 7.472951503 7.211284736 7.407162104 7.315526791 7.187952976 7.485951247 7.46837238 162072795 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 8.150891101 8.054972493 8.138676234 8.098846956 8.460648063 8.008416203 8.14990193 8.072518447 7.785247904 28853963 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 8.17549598 8.227114932 8.124946946 7.800987352 8.440584941 8.024121235 8.176758856 8.303822655 8.152068941 99030445 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 7.71164527 7.685091953 7.640777773 7.688468059 8.073477593 8.111026332 8.038644695 8.134471564 8.224033062 157404495 Ni_Fe_hydrogenase Energy process Energy process Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 6.71355685 7.035707666 6.877540045 6.927262683 179351195 sigma_24 Stress Sigma factors Natranaerobius thermophilus JW/NM-WN-LF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Natranaerobiales;family:Natranaerobiaceae;genus:Natranaerobius;species:Natranaerobius thermophilus; 7.035574272 6.950620711 89513004 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 6.796802604 7.042273059 7.026206881 6.743327248 6.717865619 7.416516256 6.960545162 7.735010138 224601746 glnA Stress Nitrogen limitation Lutiella nitroferrum 2002 7.984928383 7.835540494 7.710817898 7.6337405 7.564529513 7.951085793 8.040300665 7.855824685 7.986418091 84495000 ppx Phosphorus Phosphorus utilization Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 8.350146287 8.675541807 8.539554594 8.813336979 8.985401241 8.668003861 9.080387321 8.809388803 8.766499913 237726312 pstB Stress Phosphate limitation Bacteroides sp. D4 7.827518115 7.358655204 7.513594233 7.361465583 7.216034203 7.526997074 262200171 cap virulence capsule Gordonia bronchialis DSM 43247 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 7.642303658 7.933102317 7.952650233 8.127343168 7.823661548 8.394935187 8.023670951 7.883760938 8.152263682 116251279 fnr Stress Oxygen stress Rhizobium leguminosarum bv. viciae 3841 7.234317877 7.626821417 7.533701299 7.726085313 6.901934909 7.34322659 218172830 CopA Metal Resistance Copper Cyanothece sp. PCC 7424 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.051724407 7.422415578 63029754 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.398329975 7.88719243 7.582240666 7.959563675 7.591077849 8.031842955 7.75500478 7.932999237 7.804719944 167759005 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Clostridium scindens ATCC 35704 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium scindens; 7.417675697 7.298313533 7.453402324 7.024864455 7.287734005 7.198199712 6.965680723 111018763 nmoA Organic Remediation Aromatics Nitoaromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7.680609232 7.784654657 7.282718189 7.12957716 7.530194497 7.737859334 7.675060805 7.304430195 28901471 amyA Carbon cycling Carbon degradation Starch Vibrio parahaemolyticus RIMD 2210633 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.84737824 7.609587426 7.787035734 7.292814125 7.749541643 7.62760157 7.739463254 7.774547395 7.624902931 157165150 grpE Stress Heat shock Campylobacter concisus 13826 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter concisus; 7.34365806 7.237388289 7.041700951 7.075998108 7.674937658 156450842 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 7.243459796 7.54437002 7.393301319 7.138356905 7.229105024 7.678928712 7.07964212 7.556038246 68264158 xylC Organic Remediation Aromatics BTEX and related aromatics Corynebacterium jeikeium K411 7.841852836 7.725580024 7.399554446 7.161955344 7.651910735 7.75177831 7.121674193 7.402243867 29897658 amyA Carbon cycling Carbon degradation Starch Bacillus cereus ATCC 14579 7.505660707 7.638511498 89085318 TerC Metal Resistance Tellurium Bacillus sp. NRRL B-14911 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.596006591 7.750108715 7.887575884 7.939281126 7.742514596 7.8380319 7.771062483 7.846964449 7.878656483 71907241 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 7.414691798 7.246346936 7.194023559 6.977903294 7.454807238 253986245 pstC Stress Phosphate limitation Methylovorus sp. SIP3-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylovorus; 6.858757927 7.215734034 6.927661422 16751320 CadA Metal Resistance Cadmium Chlamydomonas reinhardtii superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Chlamydomonadaceae;genus:Chlamydomonas; 8.034007205 8.1158155 8.122318161 7.422694941 7.779537556 7.627161716 7.639907657 7.921308353 253584751 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.324884035 7.728038592 7.272278404 7.511492752 7.195318836 7.114825383 110224984 gyrB other category gyrB Streptococcus infantis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 7.74291218 7.53185297 7.553385688 7.285995005 7.255998646 7.836989286 7.784791779 7.868731247 7.916056571 86155864 hao Nitrogen Nitrification Campylobacter fetus subsp. fetus 82-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter fetus; 7.009428313 7.419774739 7.326805428 6.639789901 7.61193295 7.366508816 7.364901886 7.65805981 161392563 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 7.960360476 8.073449601 7.50112577 7.436848303 8.015521213 7.703215837 7.769508542 7.768087115 7.924327305 19912059 gyrB other category gyrB Cytophaga sp. I-601 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Cytophaga; 7.096554298 6.683453271 6.939539732 6.574748287 7.329827719 126276051 cellobiase Carbon cycling Carbon degradation Cellulose Pichia stipitis CBS 6054 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Scheffersomyces;species:Scheffersomyces stipitis; 7.646131289 7.714302742 7.652495308 7.780088288 7.978890896 8.01294525 8.145094418 7.866737406 7.98442275 209498108 Arylest Organic Remediation Aromatics Other aromatics Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.466351518 7.695056802 7.560478575 7.670460082 7.944011157 7.696664545 7.657691254 7.824429527 46307992 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6.945931425 6.89419353 7.028594723 183980301 CopA Metal Resistance Copper Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 7.45025332 7.594499378 7.539829569 7.679421461 7.424525062 7.656256928 7.572313366 7.68295875 7.464702824 37200382 TehB Metal Resistance Tellurium Vibrio vulnificus YJ016 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 8.001840771 7.695779144 7.445022985 7.516118967 7.869621407 7.872149302 7.938936174 7.769972742 7.880184472 120593191 fnr Stress Oxygen stress Polaromonas naphthalenivorans CJ2 7.365213882 7.967645988 8.259316761 7.62688213 7.360837241 7.606238707 7.570936085 162568507 aoxB Metal Resistance Arsenic Limnobacter sp. 83 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 7.432132903 7.353477891 7.137118264 6.632301645 7.126567682 7.548182141 7.130249497 7.041495342 160931242 grpE Stress Heat shock Clostridium leptum DSM 753 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 7.924567656 7.574718019 7.33530309 7.288176498 7.686592834 7.724470699 7.790032013 7.182940744 7.419306034 147886038 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured bacterium 7.004695599 7.538314267 7.82367692 7.642688398 7.009486093 8.140947387 7.575990678 7.512646284 7.585945297 214037709 hmgC Organic Remediation Aromatics Aromatic carboxylic acid marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.496971486 7.477697256 7.697101592 7.994021971 7.104731353 7.520199727 7.436696416 7.699467646 260171298 sigma_24 Stress Sigma factors Bacteroides sp. D2 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 7.893270875 7.966339381 7.989457633 7.721911049 7.189615335 7.858312967 7.979808412 8.023932323 533367 xylanase Carbon cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Thermoanaerobacterium; 6.861257234 7.462105052 220911112 clpC Stress Protein stress Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 7.765187678 7.795932105 8.227746951 8.052588635 8.11048855 8.31723034 8.275894509 8.056237545 8.359127137 36785548 bphA Organic Remediation Aromatics Polycyclic aromatics Photorhabdus luminescens subsp. laumondii TTO1 7.611441998 7.460863546 7.526504167 6.966360608 7.543480007 7.76669338 7.334683595 7.417373703 7.562477238 256579820 grpE Stress Heat shock Desulfomicrobium baculatum DSM 4028 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfomicrobiaceae;genus:Desulfomicrobium;species:Desulfomicrobium baculatum; 7.552909123 7.718608284 7.87130355 7.88892681 7.536504437 7.710240291 7.862686376 7.873095941 260171568 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Bacteroides sp. D2 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 7.466695897 7.556719255 7.581872407 7.088215115 7.521707213 7.681472 7.426142066 7.300586813 7.437745317 116062176 pstC Stress Phosphate limitation Aeropyrum pernix K1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Aeropyrum;species:Aeropyrum pernix; 7.211144613 7.214881269 7.185139677 7.275474256 7.318716755 7.116729947 7.797618795 118617926 akbF Organic Remediation Aromatics BTEX and related aromatics Mycobacterium ulcerans Agy99 7.320645363 6.904401848 7.244662368 6.849270108 7.046997523 7.420555112 7.404239999 7.238593548 7.432834084 40804947 phn Organic Remediation Herbicides related compound Pseudomonas stutzeri superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.123517401 8.224302543 7.942664214 7.880690265 8.020428484 8.27410599 7.829885335 8.073063313 7.974530805 37955584 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.2089067 7.090589398 7.070222593 6.637392761 7.445768731 7.167607896 7.012100324 7.472642291 116098389 xylanase Carbon cycling Carbon degradation Hemicellulose Lactobacillus brevis ATCC 367 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus brevis; 7.761684481 7.721592702 7.58616519 7.779378422 8.18482275 8.026444172 8.118512299 7.899732338 8.087344719 157850606 nahA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 7.164744295 7.230353601 7.373392472 7.169813986 6.960180671 7.404063026 6.898742059 7.289087733 219537129 Ni_Fe_hydrogenase Energy process Energy process Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 7.269556231 7.087861449 7.067898257 78221518 cytochrome Energy process Energy process Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 8.340889593 7.956749402 7.962888876 7.748803105 8.025282737 7.869140221 7.99898057 8.110444431 8.16903882 165877153 ureC Nitrogen Ammonification Actinobacillus pleuropneumoniae serovar 3 str. JL03 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus pleuropneumoniae; 7.464333062 7.648956338 7.110663036 7.105049361 7.625680801 7.477553201 7.309625566 152980048 gyrB other category gyrB Janthinobacterium sp. Marseille 7.916454646 7.922578424 7.599551609 7.641839237 7.61132437 7.948622401 7.899175149 7.825628751 116699605 sigma_24 Stress Sigma factors Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 7.468170387 7.306293295 6.742699025 7.076441221 7.553546178 7.186213896 7.057423633 6.779578091 32444431 phoA Stress Phosphate limitation Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 7.32598459 7.34635616 7.436843385 7.15744181 7.211653001 7.610302684 7.469804626 7.013417615 7.50380557 27354951 linC Organic Remediation Pesticides related compound Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.157138837 7.865136572 7.678801452 7.713740279 7.044439189 7.388693163 7.362212987 169190891 atzA Organic Remediation Herbicides related compound Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.902226652 7.832109692 7.726086862 7.736865393 8.012417178 7.978948036 7.910921599 7.978016814 240106290 glx Carbon cycling Carbon degradation Lignin Coccidioides posadasii C735 delta SOWgp superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides posadasii; 7.41414413 7.06384821 7.211820729 7.239332572 7.417416258 121710296 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 8.143744389 8.212185957 7.821858105 7.770263939 7.609560264 8.11670242 7.559375492 7.6233128 7.482517353 226312682 ABC_antibiotic_transporter Antibiotic resistance transporter Brevibacillus brevis NBRC 100599 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus brevis; 7.418253098 7.732309353 7.542130231 7.436981335 7.007939906 7.922462396 7.107350927 7.667948695 163942889 ChrA Metal Resistance Chromium Bacillus weihenstephanensis KBAB4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus weihenstephanensis; 7.473864113 7.221688427 7.167868719 6.855017476 7.097389811 6.952535927 189336537 ophC Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 7.947488204 7.622470922 7.54347031 7.228528204 8.064230795 7.754877099 7.566111145 7.692579143 167629356 ppx Phosphorus Phosphorus utilization Heliobacterium modesticaldum Ice1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Heliobacteriaceae;genus:Heliobacterium;species:Heliobacterium modesticaldum; 7.848920243 8.045483499 7.92270328 7.582269754 7.535258972 126315282 linB Organic Remediation Pesticides related compound Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.373221666 7.116573818 7.019802464 7.113475795 7.11389928 206896053 adpB Organic Remediation Pesticides related compound Coprothermobacter proteolyticus DSM 5265 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermodesulfobiaceae;genus:Coprothermobacter;species:Coprothermobacter proteolyticus; 7.323517689 7.181864226 7.082700756 6.718976188 7.449551734 37727203 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.4615255 7.31446307 7.162855747 7.128216246 7.525542364 7.557653073 7.300131636 7.285586139 7.430685081 73539624 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.177139019 7.241250833 7.149794182 6.969591741 6.888397145 7.533530331 56541437 katE Stress Oxygen stress Candida glabrata superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Nakaseomyces; 7.807238752 7.377069112 7.889074956 7.30097152 6.999039488 7.235999111 7.263761912 161018398 sigma_38 Stress Sigma factors Bartonella tribocorum CIP 105476 7.696027666 7.52068176 7.409371447 7.381039183 7.558022903 7.715953947 7.476728401 7.709269184 46307858 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.245649667 7.456255249 7.847124404 7.74264244 7.468637214 7.962383618 7.832497317 7.515267917 7.770814449 258537283 amoA Nitrogen Nitrification superkingdom:Archaea; 6.984539036 7.481016852 7.168121591 6.886849478 7.622009579 6.922877699 7.201948463 8671004 dsrB Sulphur sulfite reductase Desulfobacter vibrioformis 7.76790401 7.666652714 7.536283173 7.485983549 7.615962537 7.880252754 7.615397247 7.620627296 7.498463782 2588988 phdI Organic Remediation Aromatics Polycyclic aromatics Nocardioides sp. superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.797322247 9.016367036 8.732105043 8.562530629 8.938323415 8.836830244 8.803321062 8.885217564 116229493 sigma_24 Stress Sigma factors Candidatus Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 6.95438366 7.131062648 90954585 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6.947609738 6.88817493 7.146273681 6.952193472 6.852440837 160932268 ara Carbon cycling Carbon degradation Hemicellulose Clostridium leptum DSM 753 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 8.072192778 8.021150627 7.822565446 7.789559099 8.214245186 7.981886105 7.702006619 7.791835535 7.939098064 57868974 gyrB other category gyrB Candidatus Regiella insecticola superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Candidatus Regiella; 7.547904387 7.553079413 7.921793297 7.715356419 7.668162024 8.118925633 7.767321877 8.094349741 7.904931472 148530036 CopA Metal Resistance Copper Gluconacetobacter diazotrophicus PAL5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 7.922196278 7.782965888 7.615118405 7.703324022 8.066152883 8.027829569 8.171601089 7.877663099 7.904691743 226526947 srt virulence surface protein Lactobacillus brevis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus; 7.185118712 7.280947346 7.254166776 6.758095489 7.599059423 7.835553293 6.905820936 7.609596961 206565176 ppk Phosphorus Phosphorus utilization Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 7.644750778 7.963685107 8.240115933 7.4940821 8.311498101 7.827769968 7.960430045 7.910536719 56314152 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 6.790484407 7.873826304 7.369974798 7.636802426 257061911 sigma_70 Stress Sigma factors Cyanothece sp. PCC 8802 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.451189711 6.949400575 7.833075154 7.24467323 7.516661843 126731645 tftH Organic Remediation Aromatics Chlorinated aromatics Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 7.901850835 7.816988929 7.627564285 8.097050561 7.992424048 7.854499704 8.122844742 8.133880807 7.696371656 218169529 catB Organic Remediation Aromatics BTEX and related aromatics Cyanothece sp. PCC 8801 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 6.937228211 7.346025854 78484530 TehB Metal Resistance Tellurium Thiomicrospira crunogena XCL-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Thiomicrospira;species:Thiomicrospira crunogena; 7.130868674 7.202302046 7.267374184 6.692324939 6.977460655 7.330043223 260616386 MFS_antibiotic Antibiotic resistance transporter Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 7.349449905 7.462700253 7.446042844 7.340332196 6.870302155 8.023498708 7.113563046 7.054430247 7.448164138 58331380 contractile_tail_sheath_protein Bacteria phage STRUCTURAL Synechococcus phage S-PM2 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.091044878 7.375325043 6.835532219 7.118080044 91779134 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.631687596 7.503995598 7.276264901 7.081801001 7.512455561 7.399114318 7.417241688 7385097 major_capsid_protein Bacteria phage STRUCTURAL Aeromonas phage 65 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 6.984687356 7.46975228 7.372822091 6.885829331 7.258808263 7.545882954 7.289809363 7.390074074 177842215 sigma_24 Stress Sigma factors Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 7.847879452 7.667115352 7.340794822 7.536445365 7.819215738 8.056851946 7.755566326 7.531535 7.684933008 104780666 atzA Organic Remediation Herbicides related compound Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 7.270444077 7.562110307 7.567149839 7.629927415 7.100674886 7.448913408 7.313664178 7.375600707 89051497 AceA Carbon cycling Carbon degradation others Photobacterium sp. SKA34 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium; 7.196452367 7.081834033 7.259926232 7.036236137 7.678073606 7.107668603 7.297058689 186466170 clpC Stress Protein stress Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 7.124450424 7.181673031 6.985843586 163856346 sigma_70 Stress Sigma factors Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 7.777115867 7.651921263 7.522095837 7.212610469 7.256812787 7.832990111 7.509132701 7.417400438 121052531 alkK Organic Remediation Others Neisseria meningitidis Z2491 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria meningitidis; 7.206188692 7.25038534 148982399 endochitinase Carbon cycling Carbon degradation Chitin Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 7.876450649 7.605690225 7.698351249 7.160848162 7.884292251 7.820551708 7.89910093 7.962908324 8.034359483 42550388 tftH Organic Remediation Aromatics Chlorinated aromatics Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 7.378820554 7.573403471 7.750751061 7.616045728 7.657110656 8.35050108 7.544378725 7.57880067 7.620019213 170725395 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 7.508404117 7.487202038 7.378846762 7.203682684 7.149763126 7.578060653 7.176234817 7.132938936 7.099013225 60476030 rubisco Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.260247532 7.573571806 7.604583924 7.412081171 7.853639393 7.17421052 7.411743355 7.493230659 148978695 phn Organic Remediation Herbicides related compound Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 7.789592598 7.588923548 7.40105006 7.745483324 7.293508609 7.605811303 7.413429287 7.828872065 239826950 glnR Stress Nitrogen limitation Geobacillus sp. WCH70 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 6.978147237 7.104915056 157411426 napA Nitrogen Dissimilatory N reduction uncultured prokaryote 7.434879606 7.357977693 7.357446286 6.96149431 6.74699558 7.498358601 7.023432808 7.479028904 90198101 chnB Organic Remediation Other Hydrocarbons Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 7.46322661 7.571078116 7.320076765 7.318144277 7.597166025 7.4690717 7.873672539 7.450331284 7.430309805 90110617 contractile_tail_sheath_protein Bacteria phage STRUCTURAL Mannheimia phage phiMhaA1-BAA410 order:Caudovirales;family:Myoviridae;genus:P2-like viruses;species:Mannheimia phage phiMHaA1; 7.821954599 7.22388424 7.262495307 7.625546127 8.039948632 260171074 iuc virulence aerobactin Bacteroides sp. D2 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 7.118667276 6.766510708 7.116108672 255532638 rubisco Carbon cycling Carbon fixation Pedobacter heparinus DSM 2366 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter;species:Pedobacter heparinus; 7.348015466 7.60623412 7.504475565 7.063862034 6.853007877 7.760241211 7.238210453 7.362433426 7.702283162 163781985 pstB Stress Phosphate limitation Hydrogenivirga sp. 128-5-R1-1 8.436048874 8.356346218 8.404459673 7.964664721 8.772604338 8.10972085 8.561068557 92113541 chnB Organic Remediation Other Hydrocarbons Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 7.861534284 8.03426362 8.024132846 8.439373187 7.053797175 8.371498168 7.695765541 7.630095138 8.281548847 88864323 obgE Stress Radiation stress Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 7.496888425 7.937665508 7.691362761 7.652582267 7.672129454 7.754943477 7.861379541 7.737677803 78093576 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.277634309 8.365372144 7.883842423 7.770717453 8.574544151 8.284685325 7.956258588 8.604132369 160879811 pstC Stress Phosphate limitation Clostridium phytofermentans ISDg superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium phytofermentans; 7.35029199 7.494393299 67925011 pstB Stress Phosphate limitation Crocosphaera watsonii WH 8501 7.541259912 7.185602808 7.164904116 7.086082467 6.907338738 31747592 NADH_ubiquinone_oxidoreductase Bioleaching Electron transport Leptospirillum ferrooxidans 7.360538829 7.412566905 6.83417275 7.052561318 6.951941633 7.347443003 91201998 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Candidatus Kuenenia stuttgartiensis superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;genus:Candidatus Kuenenia; 7.818278878 7.664087626 8.005933115 7.344564596 7.908633731 89901224 ChrA Metal Resistance Chromium Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 8.509587001 8.174763681 8.104759955 8.710232843 8.12701745 8.376896898 8.050057889 8.413971215 251853368 glnA Stress Nitrogen limitation Corynebacterium matruchotii ATCC 14266 7.551146557 7.948086392 7.979418272 8.267462018 8.32290249 8.164551956 8.161191079 220713331 xylJ Organic Remediation Aromatics BTEX and related aromatics Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.322648575 7.274605919 7.387612667 7.421396334 6.786539141 7.270989252 7.130608863 7.761781512 269094580 glnA Stress Nitrogen limitation Veillonella parvula DSM 2008 7.368999693 6.791223061 7.089489241 47028349 sigma_32 Stress Sigma factors Rhizobium sp. TAL11145 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 8.476781574 8.351798401 8.010903826 8.404426528 8.470137494 8.607614635 8.376471832 8.526835699 7.889963805 219679683 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.624992816 7.639511424 7.5993084 6.784779842 8.040224438 7.14979082 7.187871705 7.750488819 29342395 CopA Metal Resistance Copper Enterococcus faecalis V583 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus faecalis; 7.438952845 7.201906954 7.449474053 7.21892864 6.941608088 7.251385256 7.173201541 7.491560359 261857056 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.935396243 8.931565722 8.77851842 8.882111754 8.936810916 8.998904191 8.993747481 9.157483153 256758454 pstB Stress Phosphate limitation Thiomonas intermedia K12 7.746498347 7.782063599 7.738546754 7.376739892 7.888618886 7.633481376 7.535792163 7.702980132 7.641799635 117924113 sigma_70 Stress Sigma factors Magnetococcus sp. MC-1 7.192903266 7.254738909 7.383855125 7.700679418 7.693317841 7.61930827 7.392495763 7.442957351 7.349407019 151302203 AprA Sulphur adenylylsulfate reductase Desulfatibacillum sp. Pnd3 7.691854711 7.623609809 7.566504246 7.142500266 7.859465543 7.680893867 7.742384076 7.715599296 7.748268649 218780391 pcc Carbon cycling Carbon fixation Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 8.380592322 7.844823515 8.031066607 8.329247194 8.227771991 7.163631789 8.05570992 8.258596041 8.41577111 84511110 nifH Nitrogen Nitrogen fixation Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 7.377310844 7.206087634 3172125 4HBH Organic Remediation Aromatics BTEX and related aromatics Acinetobacter sp. ADP1 7.798253968 7.738332108 7.536615094 7.325575241 7.976380546 7.672676441 7.764816963 7.556325795 7.954412374 104345809 scaffold Bacteria phage STRUCTURAL Aeromonas phage 25 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.950949976 7.907283353 7.890055618 7.43732172 7.790343601 7.957670844 7.753098254 7.78657275 7.663973852 146346449 fnr Stress Oxygen stress Clostridium kluyveri DSM 555 7.107572068 7.11552456 6.973871458 239626174 sigma_70 Stress Sigma factors Clostridiales bacterium 1_7_47_FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales; 7.923581391 7.663429969 7.519298498 7.254525425 7.596939243 7.755700562 7.215619894 7.581849788 20905391 glnA Stress Nitrogen limitation Methanosarcina mazei Go1 7.432152732 7.615704448 7.418439972 7.07935464 7.148368726 7.702276274 7.601771064 7.56522368 7.434506906 229815113 pstS Stress Phosphate limitation Collinsella intestinalis DSM 13280 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella intestinalis; 7.802575605 7.834322141 7.491902256 7.405844472 7.963935442 8.030712902 7.617520472 7.363844721 7.545514842 196114305 obgE Stress Radiation stress Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 7.166414751 7.625281609 7.239348472 7.318587762 56553358 gyrB other category gyrB Alteromonas macleodii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas; 6.902703571 7.301119226 6.793361647 7.522285983 7.017792103 7.501921109 260361829 sigma_38 Stress Sigma factors Vibrio parahaemolyticus K5030 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.498953736 7.51032472 7.296723707 7.157287031 7.330830918 7.327979219 7.278361629 21304470 pstC Stress Phosphate limitation Edwardsiella tarda superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella; 7.148348703 7.328362117 7.389124914 6.828342746 6.666854188 7.436975043 6.773113961 7.242054721 56476744 ebdABC Organic Remediation Aromatics BTEX and related aromatics Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 7.31635664 7.185565571 7.36953799 7.098551121 6.895389189 7.095300475 7.459165237 7.179842101 192289929 sigma_32 Stress Sigma factors Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.130520037 8.032950208 8.528167353 8.26896965 86146335 nplT Carbon cycling Carbon degradation Starch Vibrio sp. MED222 7.319634523 7.201219053 7.135050375 6.768971649 7.588872316 146300010 gyrB other category gyrB Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 7.541012645 7.175746234 7.280615822 7.130688076 6.981334265 7.349507044 157085835 ureC Nitrogen Ammonification Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 7.300458819 7.288591579 7.361376012 7.053697902 7.101752023 7.550378986 7.402316401 7.274829916 28629799 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.364106665 7.399466272 7.257427964 7.113019387 7.269266155 7.810093422 7.323751738 7.379016686 7.505653334 260418176 glnA Stress Nitrogen limitation Silicibacter lacuscaerulensis ITI-1157 7.242622659 7.429997984 7.634215631 7.177556198 7.770112728 7.017674673 7.255580934 241895965 gdh Nitrogen Ammonification Weissella paramesenteroides ATCC 33313 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Weissella;species:Weissella paramesenteroides; 7.562274725 7.323677113 7.319951584 164687839 obgE Stress Radiation stress Clostridium bartlettii DSM 16795 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bartlettii; 8.411170936 8.144626997 8.112734784 8.558587388 8.328236139 8.202511883 8.424378184 8.241315903 20135564 B_lactamase_C Antibiotic resistance Beta-lactamases Pseudomonas aeruginosa superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.802935079 7.742286231 7.58088331 7.525637881 7.807413732 8.092140025 8.221804856 8.104938004 7.960534342 37542402 groEL Stress Heat shock Neorickettsia helminthoeca superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales;family:Anaplasmataceae;genus:Neorickettsia; 6.942229988 7.041835015 6.682330424 7.540750145 6.959732263 6.921603978 7.232490426 113888899 fnr Stress Oxygen stress Shewanella sp. MR-7 7.33771237 7.121032561 7.068138188 7.052352642 7.411445598 152981001 silC Metal Resistance Silver Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 7.945540664 7.657358436 7.306934753 7.409842627 7.39386349 7.292425649 7.316438633 167745628 Al Metal Resistance Aluminum Anaerostipes caccae DSM 14662 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Anaerostipes;species:Anaerostipes caccae; 7.992677571 7.918828956 7.991823513 8.11538675 8.385341495 8.182433125 8.118078961 8.08563134 212671391 DNA_ligase Bacteria phage REPLICATION Kluyvera phage Kvp1 order:Caudovirales;family:Podoviridae;genus:T7-like viruses; 7.476669151 7.39494861 7.119879987 7.369915241 7.341436027 7.334107967 7.673269842 207088360 gyrB other category gyrB Nitrosococcus oceani AFC27 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 7.213846427 7.031725137 7.027872547 6.997493324 7.099536661 7.501442922 7.208915633 6.978300866 223693585 proV Stress Osmotic stress Desulfobacterium autotrophicum HRM2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium;species:Desulfobacterium autotrophicum; 8.378177301 8.060369616 8.436691297 7.630685943 8.436835907 7.839424016 8.248066746 8.398508385 7.978127905 15899176 heat_shock_protein Bioleaching other category Sulfolobus solfataricus P2 7.722676267 7.471592099 7.565428437 7.646884083 7.543130853 7.756328494 167946959 CopA Metal Resistance Copper Endoriftia persephone 'Hot96_1+Hot96_2' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Endoriftia;species:Endoriftia persephone; 7.124587142 7.053851369 7.013591346 258513443 dsrA Sulphur sulfite reductase Desulfotomaculum acetoxidans DSM 771 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum acetoxidans; 6.853772244 6.655081465 7.125293563 6.967248945 7.464714892 7.045994041 6.913096372 7.347129548 219861158 catechol_B Organic Remediation Aromatics Other aromatics Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 7.92681325 8.104618196 7.68464299 7.407314174 7.986935673 7.940390737 7.728244583 7.744387707 7.941648653 187922089 ureC Nitrogen Ammonification Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.641067742 7.428207695 7.196807353 7.696661625 7.681281646 7.402966742 247546751 xylA Carbon cycling Carbon degradation Hemicellulose Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.706106601 7.671875969 7.800935235 7.619116451 7.587200181 7.954440175 8.128491534 7.988741583 7.804671792 134094810 czcC Metal Resistance "Cadmium,Cobalt,Zinc" Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 7.047068906 7.234565318 7.041827483 7.648353495 2828543 ureC Nitrogen Ammonification Actinobacillus pleuropneumoniae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus; 7.337083308 7.293089591 7.355118601 7.576177841 7.433018049 7.323717021 7.336823632 145573441 AceB Carbon cycling Carbon degradation others Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 7.516490334 7.928894494 8.047272651 7.788058613 7.642501507 8.067539426 7.394496886 7.666902104 7.497265384 146322309 endochitinase Carbon cycling Carbon degradation Chitin Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 7.395651441 7.506526203 7.243641966 7.203192202 7.120644646 7.548514708 7.094767009 7.111379986 7.11334088 247544615 katE Stress Oxygen stress Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.182162943 7.078580686 7.034479488 7.0120335 7.46014793 7.065295933 7.210484932 118424343 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.11223353 7.046636237 59480681 AceB Carbon cycling Carbon degradation others Vibrio fischeri ES114 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Vibrio fischeri; 7.658092492 7.295846481 6.895258542 7.48697048 72161271 sigma_70 Stress Sigma factors Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 9.740671843 9.218064514 8.957434574 37528223 AceA Carbon cycling Carbon degradation others Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 7.091791818 7.092006989 6.842439313 6.597256804 7.650330571 7.027996701 7.275634169 196252358 endoglucanase Carbon cycling Carbon degradation Cellulose Clostridium thermocellum DSM 4150 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 6.621526714 7.184697742 145701603 cytochrome_c Bioleaching Electron transport Metallosphaera sedula DSM 5348 7.631103744 7.788046229 7.622716408 7.131694547 7.790180041 7.70077552 7.712961852 7.665238205 71848705 obgE Stress Radiation stress Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 8.238208362 8.193421586 7.790788324 8.108368256 8.192487664 8.16036487 7.979128344 7.662868249 7.735503177 116610708 nagI Organic Remediation Aromatics Aromatic carboxylic acid Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.476681583 7.614791091 7.753154837 7.371079593 7.627483342 7.561101443 7.372448015 7.705363398 7.530315093 57241681 gyrB other category gyrB Campylobacter lari RM2100 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter lari; 7.855334408 7.431911207 7.23805628 7.119390474 7.403483019 7.852878214 7.475628461 7.494217458 7.348187716 91690173 xylA Carbon cycling Carbon degradation Hemicellulose Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 6.965870735 7.140601339 7.068575918 6.917899064 7.214435989 106895848 ppx Phosphorus Phosphorus utilization Clostridium sp. OhILAs superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus oremlandii; 7.073559318 7.591127788 226095503 Tet Antibiotic resistance other Brevibacillus brevis NBRC 100599 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus brevis; 7.43759986 6.914417777 78193586 hydrogenase Energy process Energy process Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 8.219899348 8.269722096 8.111599448 8.105553532 8.455876217 8.187124854 8.367093758 8.345333619 8.33065167 148568536 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 7.192508542 7.017572797 7.328180777 129279082 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.625148275 7.301050238 7.4081499 7.247371699 7.559210728 7.836866118 7.445468342 7.43195159 7.581460851 6117983 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus watsoni; 7.140846711 7.039677914 460687 cda Carbon cycling Carbon degradation Starch Bacillus sp. XAL601 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.182550108 7.530908115 7.831157218 6.810877157 7.232793388 7.308629749 7.782617653 126237840 TerC Metal Resistance Tellurium Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.635067959 8.043504048 7.833080245 7.753761192 7.597575268 148263254 MFS_antibiotic Antibiotic resistance transporter Geobacter uraniireducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 8.02528005 8.276324994 8.278085542 7.933748289 8.603513709 8.58582733 8.017971488 8.04774754 8.136231061 497878 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.076122839 6.928106097 7.022938015 7.001305926 6.878682114 7.192397166 15076020 linB Organic Remediation Pesticides related compound Sinorhizobium meliloti superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium; 7.276196196 7.084796762 7.497338603 7.601463327 6.479310025 7.304740285 6.845321636 7.466803201 28270779 gdh Nitrogen Ammonification Lactobacillus plantarum WCFS1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus plantarum; 6.778547109 7.395944652 157682520 CopA Metal Resistance Copper Bacillus pumilus SAFR-032 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pumilus; 7.7875891 7.873125382 7.678566613 7.836422923 8.076357909 8.263001557 7.650887128 7.518903749 7.74707647 259909291 ahpC Stress Oxygen stress Erwinia pyrifoliae Ep1/96 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia pyrifoliae; 7.194559535 7.008143408 6.610627072 7.606524202 77812117 TerC Metal Resistance Tellurium Shewanella putrefaciens CN-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella putrefaciens; 7.319379311 7.268986906 6.93727456 6.973035517 7.269845876 91780268 endochitinase Carbon cycling Carbon degradation Chitin Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.679213628 7.485347889 7.480892319 7.214153868 7.143198762 7.649839321 7.346027756 7.26601955 7.095804857 251856976 nrfA Nitrogen Dissimilatory N reduction Prevotella melaninogenica ATCC 25845 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella melaninogenica; 6.990700986 6.863319853 7.098524283 7.200008228 6.913473076 7.318278113 149739351 alkK Organic Remediation Others Vibrio cholerae MZO-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 7.131353751 7.310601483 7.175671999 6.905847166 7.776441008 2981212 RNA_dependent__RNA_polymerase Bacteria phage REPLICATION bacteriophage M11 family:Leviviridae;genus:Allolevivirus;species:Enterobacteria phage Qbeta sensu lato; 7.468689755 7.072823343 7.146059346 6.797332943 7.032823716 7.249086514 28805741 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Vibrio parahaemolyticus RIMD 2210633 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.703496297 7.307721156 7.180532899 6.883296866 7.080583388 7.575922758 7.191987177 7.055189035 7.462845807 52631732 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.203183699 7.962031408 7.61471084 8.190308494 8.64233738 8.255817872 8.414201607 7.834595858 8.46937842 87120670 ureC Nitrogen Ammonification Marinomonas sp. MED121 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 7.212962074 7.023649301 7.216809339 7.406052377 61374526 T4_recomb_endonuclease Bacteria phage REPLICATION Prochlorococcus phage P-SSM2 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.092560184 6.871055953 6.913298214 7.40872611 112463543 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.418025578 7.356246113 7.372681591 7.068517405 7.224084224 7.377615427 7.267569793 7.02769081 154501519 sigma_24 Stress Sigma factors Bacteroides capillosus ATCC 29799 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides capillosus; 8.605961045 8.2211247 8.736800695 62199821 helicase_family_4 Bacteria phage REPLICATION Enterobacteria phage RB69 7.169020244 7.400784321 144948191 cda Carbon cycling Carbon degradation Starch Petrotoga mobilis SJ95 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Petrotoga;species:Petrotoga mobilis; 6.950121859 6.923100267 6.956241838 73533622 catechol_B Organic Remediation Aromatics Other aromatics Geobacillus stearothermophilus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.02561666 7.582392602 187918833 Catechol Organic Remediation Aromatics Other aromatics Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8.676111421 8.512170205 8.651283965 188022088 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Providencia stuartii ATCC 25827 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia stuartii; 7.231440792 7.129817756 6.94175148 6.701071031 6.717075167 7.496057457 6.823472721 6.993509443 7.238553284 121553598 nahA Organic Remediation Aromatics Polycyclic aromatics Verminephrobacter eiseniae EF01-2 7.832829842 7.661395043 7.61286233 8.295722911 7.81672049 8.250956898 7.61897536 7.675804377 7.507961849 255929833 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.138162915 6.924634495 228696663 nplT Carbon cycling Carbon degradation Starch Bacillus cereus Rock3-44 7.55525438 7.60851761 7.692691188 7.465672176 7.614158802 7.679033552 7.658586861 7.438455048 7.480586233 33591498 cydA Stress Oxygen limitation Bordetella pertussis Tohama I superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella pertussis; 7.264754949 7.413083438 7.492353197 7.122917846 7.73484975 7.328143571 7.345089239 8.196641074 133754585 phenol_oxidase Carbon cycling Carbon degradation Lignin Omphalina pyxidata superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Omphalina; 7.161820413 7.200788976 7.186766865 7.096743632 6.775770635 7.697159282 7.302607179 7.205895334 148259758 antioxidant Bioleaching Metal Resistance Acidiphilium cryptum JF-5 7.895311602 7.853188333 7.919259906 7.82123398 7.834297471 8.001923742 8.057790678 7.942749875 7.965981779 521142 pcaG Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.086576949 7.022913513 7.154909918 7.381519602 7.622459116 6.931898786 7.510882265 126593829 TerZ Metal Resistance Tellurium Bacillus sp. B14905 6.746137127 7.604412868 26278824 narG Nitrogen Denitrification uncultured bacterium 7.574631763 7.256629405 7.316041427 7.67238383 7.453825914 7.696274276 7.449856749 7.344151157 7.279669272 153796797 hrcA Stress Heat shock Ruminococcus gnavus ATCC 29149 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus gnavus; 7.594453885 7.282027079 7.25255909 7.279505413 68537027 AceA Carbon cycling Carbon degradation others Corynebacterium jeikeium K411 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 8.063404777 8.151068957 7.809447704 8.05768893 8.001858874 7.917269395 8.024243635 7.812855737 227500808 Tet Antibiotic resistance other Anaerococcus tetradius ATCC 35098 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Anaerococcus;species:Anaerococcus tetradius; 6.942692292 7.049297583 56419116 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Geobacillus kaustophilus HTA426 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus kaustophilus; 7.121164687 7.122863689 218757779 hydrogenase Energy process Energy process Desulfovibrio vulgaris str. 'Miyazaki F' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 8.941484794 8.729112236 8.750158954 8.915216372 8.599876989 8.87333374 8.787430626 8.730177362 8.847156009 170693260 nmoA Organic Remediation Aromatics Nitoaromatics Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 7.521857461 7.21984481 7.243579845 7.451907978 7.05498864 7.714413094 186971340 glnA Stress Nitrogen limitation Elusimicrobium minutum Pei191 7.344904726 7.459850355 7.498789343 7.38527432 7.600585742 7.854825179 7.435741234 7.756198073 7.611998097 58002919 iro virulence Gluconobacter oxydans 621H superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter oxydans; 7.370507391 7.495798029 7.530910948 6.593651455 7.178274027 7.598162657 4514461 gyrB other category gyrB Acinetobacter sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 7.231501369 7.046055044 78222633 sigma_38 Stress Sigma factors Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 8.008752334 7.315283053 7.215915503 7.35840254 7.385687498 7.46323762 7.615215214 7.373577627 7.801334535 212526378 AceA Carbon cycling Carbon degradation others Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.695604042 7.767690388 7.574467205 7.364123373 7.532179818 7.314021393 7.228221759 7.64281318 118424532 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.327314734 7.19834998 160881641 sigma_38 Stress Sigma factors Clostridium phytofermentans ISDg 7.212408395 7.46446852 6.842178954 7.319430234 7.555767284 7.167777248 7.081343069 45188195 cellobiase Carbon cycling Carbon degradation Cellulose Eremothecium gossypii superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Eremothecium; 7.665740958 7.669958277 7.674411754 7.605795273 7.182076384 8.05505217 7.489681987 7.251237179 7.713726041 91807156 nosZ Nitrogen Denitrification uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 7.407569199 7.205127113 7.326775742 7.643383412 7.51049647 7.184823278 7.21212223 121699840 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7.037084661 7.004695587 229865802 ahpC Stress Oxygen stress Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 7.879035264 7.720188476 8.19698216 8.38170472 7.864942144 8.473182077 7.740328982 7.921216661 229161863 phoA Stress Phosphate limitation Bacillus cereus R309803 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 7.134111964 7.543669085 7.263662919 7.398617487 7.050306927 58616383 TerD Metal Resistance Tellurium Azoarcus sp. EbN1 7.92185989 7.790433438 7.447056501 7.831479964 8.161477125 7.910787095 7.85656148 7.965129284 7.974991932 260906324 obgE Stress Radiation stress Brevibacterium linens BL2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium linens; 8.541750874 8.67891824 8.616401577 8.894786348 8.824317808 8.945948013 8.930767247 8.89745009 206592004 proO Organic Remediation Aromatics Other aromatics Ralstonia solanacearum IPO1609 7.695663623 7.682478077 7.563059086 7.502456091 7.876997517 8.103878511 7.88957592 8.005836094 148850790 ChrA Metal Resistance Chromium Bacillus sp. SG-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.772865311 7.914537636 7.692758165 7.852912404 7.70186432 8.00922502 7.843508689 7.421642315 7.60659976 110962351 B_lactamase_A Antibiotic resistance Beta-lactamases Salmonella typhimurium superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 7.171183661 7.214578813 14039643 nirK Nitrogen Denitrification Nitrosomonas sp. TA-921i-NH4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 7.458686913 7.21342976 7.222827261 7.159522085 6.930313238 7.223922198 7.227625654 151302314 APS_AprA Sulphur adenylylsulfate reductase sulfate-reducing bacterium DSM 15769 7.186776188 6.837520203 7.272807731 7.126913887 6.764465921 7.478006005 6.94302674 6.973665737 7.42323311 54297546 ZntA Metal Resistance Zinc Legionella pneumophila str. Paris superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella;species:Legionella pneumophila; 7.507082607 7.474524096 7.387589321 7.3583081 7.544154116 145282555 tmoABE Organic Remediation Aromatics BTEX and related aromatics Pyrobaculum arsenaticum DSM 13514 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum arsenaticum; 7.000556593 7.348388273 7.0571483 6.720529318 145568841 ArsC Metal Resistance Arsenic Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 7.275710872 7.513060004 7.247531539 7.244022321 7.065494588 7.314164259 7.269125194 7.439377166 78168017 sigma_70 Stress Sigma factors Synechococcus sp. CC9902 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.29972146 7.404945227 7.461729217 6.856026094 7.531803809 7.666135929 7.388415111 7.27790836 7.518052624 40795442 T4_recomb_endonuclease Bacteria phage REPLICATION Aeromonas phage 65 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.227843324 7.209709528 7.315765243 7.125056999 6.982394396 198274493 ara Carbon cycling Carbon degradation Hemicellulose Bacteroides plebeius DSM 17135 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides plebeius; 7.587765614 7.233697747 7.429468699 6.989993944 7.481245946 7.419018412 7.639024447 7.526013101 192362103 glnA Stress Nitrogen limitation Cellvibrio japonicus Ueda107 7.835637871 7.588153545 7.456021419 7.446779804 7.602536933 7.95462402 7.297157649 7.275492581 7.692890364 209967127 exaA Organic Remediation Chlorinated solvents Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 7.791975176 7.695229028 7.840055551 8.072314343 7.843106834 8.375045444 7.822776842 8.079764771 7.88465949 145268882 iro virulence Haemophilus influenzae PittHH superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus influenzae; 7.314241802 7.242599867 119369940 gyrB other category gyrB uncultured bacterium 7.704484545 7.715159018 7.747854681 7.43478456 7.644874695 7.677686606 7.871311541 8.051990922 7.886265844 198262985 ppx Phosphorus Phosphorus utilization gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.265863983 7.102720671 7.067143055 6.703510707 7.333511969 153798880 pulA Carbon cycling Carbon degradation Starch Actinomyces odontolyticus ATCC 17982 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces odontolyticus; 7.316606353 7.447357064 7.174091772 7.078958991 7.358342329 7.540934163 7.292108261 7.584528626 153003396 hydrogenase Energy process Energy process Anaeromyxobacter sp. Fw109-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 7.303610215 7.241552714 7.517950536 7.269490943 7.158145541 7.185405049 7.460265587 261283833 sigma_24 Stress Sigma factors Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.015272806 7.947284306 8.112260821 7.540034051 7.87991215 8.225805454 8.110713962 54303945 sox Sulphur Sulphur oxidation Pseudaminobacter salicylatoxidans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Pseudaminobacter; 7.398102589 7.298561323 7.471339159 7.131333505 7.155283667 7.945086351 7.481391777 7.418429211 7.487874523 122090150 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Yersinia enterocolitica subsp. enterocolitica 8081 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 8.255857934 8.19684169 8.231281442 7.863701858 7.904387377 8.164546805 8.2423632 8.318254701 93354702 tftH Organic Remediation Aromatics Chlorinated aromatics Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.584097255 8.421224211 8.20583937 8.352871718 9.114772072 8.400436319 8.516272438 8.271737742 8.938344641 89098297 gyrB other category gyrB Bacillus sp. NRRL B-14911 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.601427924 7.378585187 7.142383818 7.361451402 7.901388885 89512800 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.2184367 7.064026415 7.096791189 6.763077641 7.277423272 222107054 pcaG Organic Remediation Aromatics Other aromatics Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 7.899170063 7.717645778 7.719159477 7.670810343 7.651362392 7.959964585 7.809673861 7.445124539 7.574081987 187735796 pstB Stress Phosphate limitation Akkermansia muciniphila ATCC BAA-835 9.596254816 9.739657929 10.13817061 225849737 sigma_38 Stress Sigma factors Persephonella marina EX-H1 7.245000061 7.036774542 6.905965349 6.816022597 149360872 aclB Carbon cycling Carbon fixation Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 7.530290977 7.334231577 7.739376781 7.370750001 7.009996094 7.908311292 7.443977998 7.243846717 7.422651105 160346268 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 7.689262003 8.118660788 8.056178563 8.000397861 8.294618612 17570834 holin_type_2 Bacteria phage LYSIS Enterobacteria phage T3 order:Caudovirales;family:Podoviridae;genus:T7-like viruses; 7.324184443 7.196315299 6.9954852 7.736041424 7.28443698 7.328147039 284007029 type_III_secretion virulence secretion Arsenophonus nasoniae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Arsenophonus; 7.175887372 8.093423259 7.643082377 7.446386618 7.851280558 7.513641113 7.513769816 7.434020757 145048284 sigma_70 Stress Sigma factors Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 7.347480404 7.336676098 7.286772271 7.085692732 7.537053784 780715 nifH Nitrogen Nitrogen fixation unidentified marine eubacterium superkingdom:Bacteria; 7.082561139 7.5924967 7.29591381 260935518 AceA Carbon cycling Carbon degradation others Vibrio orientalis CIP 102891 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 6.913096394 7.168943573 6.871949276 6.881903335 7.259683065 115436892 tfdA Organic Remediation Aromatics Chlorinated aromatics Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.511553504 7.665635539 7.821082324 7.425419006 7.213039246 7.582018894 7.546708067 7.81077092 154247907 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 7.87204843 7.530286192 7.190134083 7.80849267 7.741614337 7.503639194 7.601184812 7.569950534 95110683 nagG Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas 7.402215519 7.811179671 7.90736962 7.844749425 7.545709889 7.494881627 7.428328646 7.751372748 220719285 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 8.034225412 8.372729157 8.759532481 8.34998315 8.629880121 8.615700964 8.253919113 8.611834159 8.367517287 148264369 fnr Stress Oxygen stress Geobacter uraniireducens Rf4 7.683716016 7.634670113 7.547521325 7.125125508 7.018814354 7.929999073 7.070531029 7.151744095 7.528819005 261366892 ppk Phosphorus Phosphorus utilization Subdoligranulum variabile DSM 15176 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Subdoligranulum;species:Subdoligranulum variabile; 7.589548645 7.48269058 7.030948785 7.547913542 7.653286955 7.568504525 7.622622453 76058168 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.713357397 7.647904395 7.334000353 7.725086581 7.888609795 8.333905425 7.83768209 7.781909007 7.802623695 42547342 cadBD Metal Resistance Cadmium Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 7.488999513 7.498212223 7.229352836 7.599250736 40062882 linC Organic Remediation Pesticides related compound uncultured bacterium 442 superkingdom:Bacteria; 7.562841907 7.117855996 7.054182486 6.983392878 6.511119501 7.554434663 262405720 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Bacteroides sp. 2_1_22 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 7.532515213 7.482029577 7.387202536 10639807 ATP_binding_protein_related_resistance Bioleaching Antibiotic Resistance Thermoplasma acidophilum 7.748514923 7.544379035 7.552319552 7.169358751 7.531635221 7.654363146 7.71800674 7.495213484 7.477632228 212555604 phoB Stress Phosphate limitation Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 7.481127284 7.723648784 7.517781279 7.406789902 7.911088396 8.168093687 7.59969317 7.514441909 16303247 ferredoxin_oxidoreductase Bioleaching Electron transport Sulfolobus solfataricus;Sulfolobus solfataricus P2 7.786441915 7.538471729 7.371848678 7.536560924 7.45428844 7.508107029 7.217243335 56381557 cda Carbon cycling Carbon degradation Starch Geobacillus kaustophilus HTA426 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus kaustophilus; 7.372505605 7.030680457 7.044225447 7.451041481 7.545083269 7.24984626 7.003871927 7.291140335 198274775 fnr Stress Oxygen stress Bacteroides plebeius DSM 17135 7.481828048 7.474401446 261599977 mcrA Carbon cycling Methane Methane production Methanospirillum sp. Ki8-1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanospirillaceae;genus:Methanospirillum; 7.400072098 7.130155749 7.246276217 6.896215358 7.019240257 7.758088004 7.162052136 7.119443753 7.519932658 110612701 gyrB other category gyrB uncultured bacterium superkingdom:Bacteria; 7.294090025 7.309918946 7.15701635 6.911140506 6.858158928 7.644810992 7.06267395 6.889762134 7.279832585 163811801 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.116023431 7.44385163 37522727 ahpC Stress Oxygen stress Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 7.796270031 7.32117921 7.385825494 7.92513331 7.596594933 7.575789137 7.946517355 7.977604742 164654923 phenol_oxidase Carbon cycling Carbon degradation Lignin Malassezia globosa CBS 7966 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Exobasidiomycetes;order:Malasseziales;family:Malasseziaceae;genus:Malassezia;species:Malassezia globosa; 7.916776365 7.816063802 7.166767464 8.065987396 7.994058986 8.053091878 7.656408257 7.673447834 7.365913571 70989153 Catechol Organic Remediation Aromatics Other aromatics Aspergillus fumigatus Af293 8.106462524 8.037394464 7.931891386 7.251728299 7.915124231 7.93297005 7.749546441 8.219319516 7.716411508 260439045 amyA Carbon cycling Carbon degradation Starch Butyrivibrio crossotus DSM 2876 7.196246208 7.054537793 7.061459008 6.888882328 7.454397387 6.833404139 7.176668255 6.834008355 160901372 alkH Organic Remediation Other Hydrocarbons Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.95105009 7.95554485 7.702646389 7.784802966 7.982869068 8.190477756 7.817456416 7.985236223 7.887226766 24982274 iro virulence Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.402084841 7.023972316 7.340785998 6.711533979 7.561731252 6.974363418 7.285877029 159507390 hrcA Stress Heat shock Bacillus megaterium superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.068248295 7.116216944 52784596 amyA Carbon cycling Carbon degradation Starch Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 7.581501812 7.331872932 7.074324219 77959426 TehB Metal Resistance Tellurium Yersinia bercovieri ATCC 43970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 7.098029066 7.102587819 6.893369537 7.42498898 82410669 pchCF Organic Remediation Aromatics BTEX and related aromatics Nitrosospira multiformis ATCC 25196 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira;species:Nitrosospira multiformis; 7.862332754 7.523248978 7.708307277 7.301678231 7.63176378 7.505243897 7.851093638 7.675525602 7.834082696 169258566 groEL Stress Heat shock Anaerofustis stercorihominis DSM 17244 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Anaerofustis;species:Anaerofustis stercorihominis; 7.311760346 7.11592092 6.972868152 6.832928113 7.233219375 98976388 phoB Stress Phosphate limitation Sphingopyxis alaskensis RB2256 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 7.548174466 7.771884001 7.853607996 7.740343471 7.812457558 7.898067856 7.919892623 8.100751916 7.827140306 160936953 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Clostridium bolteae ATCC BAA-613 7.503079815 8.345619685 8.667678689 8.257622411 8.282991148 8.354589843 8.450250978 56964353 pstB Stress Phosphate limitation Bacillus clausii KSM-K16 6.734121582 7.462189178 7.164276296 7.336659359 85859336 pstB Stress Phosphate limitation Syntrophus aciditrophicus SB 7.815615774 7.725438175 7.653912073 7.457622466 7.521836012 7.709216952 7.545289181 7.395312339 7.256194184 88799186 pstC Stress Phosphate limitation Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 7.24441343 7.275502811 7.280916238 6.526586491 7.56703044 7.223574776 7.171861192 74038378 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.923933481 8.169179652 8.092073641 7.949230038 8.315862198 8.151884624 8.401147604 8.164969807 7.974720778 45357641 dsrB Sulphur sulfite reductase Methanococcus maripaludis S2 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanococcaceae;genus:Methanococcus;species:Methanococcus maripaludis; 7.297443813 6.914589147 7.230019151 29605797 pulA Carbon cycling Carbon degradation Starch Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 7.884373696 7.776483184 8.166879815 7.56561661 7.625625678 7.841411821 7.675867837 73539847 phdCI Organic Remediation Aromatics Polycyclic aromatics Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.653178807 7.66018257 7.635150857 7.044185803 7.914823698 7.089177876 7.7387037 182635384 nmoA Organic Remediation Aromatics Nitoaromatics Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 7.083059553 7.354390234 7.533619199 6.572610945 7.400905806 7.505523559 159121344 ahpC Stress Oxygen stress Rickettsiella grylli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Coxiellaceae;genus:Rickettsiella; 7.343233835 7.245907966 7.597773345 261404495 nplT Carbon cycling Carbon degradation Starch Geobacillus sp. Y412MC10 7.219116584 7.057349433 7.095681892 7.214018778 91717437 pilin virulence pilin Candidatus Pelagibacter ubique HTCC1002 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales;genus:Candidatus Pelagibacter;species:Candidatus Pelagibacter ubique; 7.2925991 7.404754528 6.952752526 7.311133818 7.165308207 7.463316946 7.652975853 158138753 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.347037452 7.600149829 7.612749165 7.172822754 7.444535408 7.122536256 7.798358562 222524598 aoxB Metal Resistance Arsenic Chloroflexus sp. Y-400-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus; 7.448339182 7.096807349 7.201509709 6.769207268 6.757833113 7.548830875 7.365144854 6.767087221 7.209565564 62130359 nrfA Nitrogen Dissimilatory N reduction Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 7.397035364 7.306464613 7.001262613 7.082637502 257454636 AceB Carbon cycling Carbon degradation others Enhydrobacter aerosaccus SK60 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Enhydrobacter;species:Enhydrobacter aerosaccus; 6.857808612 7.064945835 6.906476559 6.938045131 7.489288677 145304531 bphC Organic Remediation Aromatics Polycyclic aromatics Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 8.485781064 8.387850907 8.174065789 8.569484949 8.495084197 8.263068892 8.436606484 8.539509278 7.755895485 85059976 hly virulence hemolysin Sodalis glossinidius str. 'morsitans' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Sodalis;species:Sodalis glossinidius; 7.305413788 7.814408025 7.933055954 7.809037713 8.128068855 94428935 glnA Stress Nitrogen limitation Oceanobacter sp. RED65 7.373542823 7.623482881 7.355468311 7.228568955 167659921 ChrA Metal Resistance Chromium Alistipes putredinis DSM 17216 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes;species:Alistipes putredinis; 8.24044153 8.12502726 8.030297092 7.874125361 8.468982481 8.154581784 8.075938168 7.938561404 8.350301305 157314907 CopA Metal Resistance Copper Thermotoga lettingae TMO superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga;species:Thermotoga lettingae; 6.955292974 7.043845722 6.879710181 150376670 pcc Carbon cycling Carbon fixation Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 8.16148859 7.866198969 7.702885998 7.836490702 8.007714772 7.902077474 7.748544757 7.713831835 7.523334979 68552621 mer Metal Resistance Mercury Prosthecochloris aestuarii DSM 271 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Prosthecochloris;species:Prosthecochloris aestuarii; 8.131183401 8.002712366 7.467113683 7.244467417 7.940317585 7.758797997 7.741522696 7.559299595 7.851199257 17385534 narG Nitrogen Denitrification uncultured bacterium 8.039762943 7.257566924 7.708064007 7.382272797 7.707221427 7.225917704 7.575348047 7.715879805 119512027 vanA Carbon cycling Carbon degradation Others Nodularia spumigena CCY9414 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nodularia;species:Nodularia spumigena; 7.477678761 7.355023069 7.525709443 7.069293738 6.628674616 7.136024448 7.224252171 7.282072241 7.919875118 83772956 endochitinase Carbon cycling Carbon degradation Chitin Aspergillus oryzae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 6.991170724 7.151249859 7.31578331 6.844788722 7.464963029 7.271983012 7.215715337 152967252 TerZ Metal Resistance Tellurium Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 7.561112965 7.499608429 7.682862336 7.268224703 7.715409947 7.235149292 7.687351442 134135135 sigma_70 Stress Sigma factors Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 7.786728451 7.834423374 7.660160684 7.446418889 7.916749251 7.964493307 7.450708609 7.715728258 7.473043831 88789236 fnr Stress Oxygen stress Nitrococcus mobilis Nb-231 7.544512926 7.470732327 7.008086763 7.200721968 7.9147455 7.133296909 7.381950249 7.098905509 26989202 cytochrome Energy process Energy process Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.591941218 7.462165412 7.669887421 7.638381621 7.563740128 152966388 nitro Organic Remediation Others Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 7.933005581 7.733578156 7.873311582 7.959289203 7.740562438 7.7348054 7.686953366 7.497670149 197210177 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.664526445 7.671848934 7.56879817 7.333405861 7.729240718 8.048539771 7.737719074 7.697863302 7.730375159 39997090 fnr Stress Oxygen stress Geobacter sulfurreducens PCA 6.961405588 6.882046123 110637666 ureC Nitrogen Ammonification Cytophaga hutchinsonii ATCC 33406 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Cytophaga;species:Cytophaga hutchinsonii; 7.583575603 7.424048287 7.236683548 7.399971861 7.759516243 89145338 mannanase Carbon cycling Carbon degradation Hemicellulose Bacillus sp. JAMB750 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.335923685 7.114218716 119774581 cytochrome Energy process Energy process Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 7.381513845 7.320556694 158305562 nagG Organic Remediation Aromatics Aromatic carboxylic acid Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;genus:Acaryochloris;species:Acaryochloris marina; 7.328242742 7.937536857 8.10512 7.909830476 8.216787959 8.34405909 8.255223457 283768702 cap virulence capsule Bulleidia extructa W1219 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichi;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Bulleidia;species:Bulleidia extructa; 6.999372824 6.965698685 159889605 oxyR Stress Oxygen stress Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 7.885038886 7.745865883 7.782394188 7.582272356 7.409192081 7.884537434 7.557672525 7.367568022 7.511862185 91788957 sigma_70 Stress Sigma factors Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 8.028896663 7.830879036 8.164773404 8.322046099 7.743144667 8.389909593 7.546507091 7.611118519 194309236 phoA Stress Phosphate limitation Pelodictyon phaeoclathratiforme BU-1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 8.035075684 8.327746941 7.933171417 7.742622853 7.804729258 8.230735745 8.017535637 7.82344269 8.037419399 68567323 universal_stress_Family_protein_III Bioleaching other category Sulfolobus acidocaldarius DSM 639 7.210106042 6.963489928 112462935 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.381041742 7.258560915 7.160660849 7.289231506 7.537615666 7.284199927 7.438386329 7.481388962 55376427 CadA Metal Resistance Cadmium Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 7.916865133 7.365617503 7.268150621 7.005903395 7.483177906 7.160730015 7.058974364 7.430149892 221168209 pcpE Organic Remediation Herbicides related compound Burkholderia multivorans CGD1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 7.838993421 7.797436145 7.636845935 7.724526771 8.102940244 7.82253932 7.716691752 7.619016897 7.887568245 163740382 CopA Metal Resistance Copper Phaeobacter gallaeciensis 2.10 7.55014319 7.209036567 7.52819051 7.272487075 7.136149443 7.437242098 170658946 iro virulence Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 7.943419109 7.637204298 7.376714619 7.367915404 7.904934308 7.833013331 7.753164751 7.735008236 7.699172175 109457400 nasA Nitrogen Assimilatory N reduction Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 7.603731536 7.395902694 7.261291212 6.965423341 7.350729805 7.990243695 7.354851319 7.096585069 7.499397846 239806422 SMR_antibiotics Antibiotic resistance transporter Geobacillus sp. WCH70 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.069884771 7.909230905 7.746514411 7.975830782 8.093832536 8.258315325 8.418554829 7.734678833 38233316 sigma_24 Stress Sigma factors Corynebacterium diphtheriae NCTC 13129 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium diphtheriae; 6.982551614 7.606409092 7.177127147 7.388927537 149122807 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Methylobacterium sp. 4-46 7.459408334 7.471173801 7.019180963 7.087321004 7.627171055 7.274070882 7.168849038 19886721 atzA Organic Remediation Herbicides related compound Methanopyrus kandleri AV19 7.798447531 8.112856823 7.999598791 7.755887576 8.075048908 7.600848073 7.93681549 7.963386129 189202342 glx Carbon cycling Carbon degradation Lignin Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7.307959477 7.280455632 7.333785055 7.548130247 7.08285463 7.396832777 7.205064411 7.245185484 7.319792658 89049519 hly virulence hemolysin Photobacterium sp. SKA34 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium; 7.178744092 7.231965336 6.935889592 7.130716799 110646643 carA Organic Remediation Aromatics Heterocyclic aromatics Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 8.042320944 7.78657245 7.463542774 8.058595469 7.802984397 7.861482436 8.0515404 118048714 pbrA Metal Resistance Lead Chloroflexus aggregans DSM 9485 8.306639159 8.824567512 8.267654166 8.207427948 9.164603695 8.419779141 8.562058005 154685723 SMR_antibiotics Antibiotic resistance transporter Bacillus amyloliquefaciens FZB42 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 7.62799887 7.486297715 7.471773713 6.975786598 6.941319441 7.588228727 7.652043401 7.884252412 91699648 narH Stress Oxygen limitation Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 7.696418013 7.43544888 7.289770632 7.260734113 6.998133255 7.743028143 7.329691739 7.07838346 7.298693183 23978214 gyrB other category gyrB Oscillatoria agardhii superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Planktothrix; 6.681443659 6.974013991 110819400 linB Organic Remediation Pesticides related compound Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7.866493246 7.991130869 7.803526229 7.802501788 7.55880271 7.495776199 7.67133203 7.355993874 7.547689674 159181710 CODH Carbon cycling Carbon fixation alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 7.345216606 7.294732176 6.974866595 7.652075873 196171341 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Anaeromyxobacter sp. K superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 7.635528198 7.533015197 6.997419069 7.524088466 7.568130135 7.41238843 7.344099217 211958502 Arylest Organic Remediation Aromatics Other aromatics Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 7.469526955 7.57518887 7.234675365 7.205078958 7.648943081 7.708467288 7.556956963 7.25256718 145612986 nagG Organic Remediation Aromatics Aromatic carboxylic acid Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 9.134465075 8.666775796 8.90871511 8.866562732 9.03956912 8.683575483 8.75957581 8.840317767 1236869 inv virulence invasion Salmonella enterica superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella; 7.305811028 7.127896378 7.152943185 7.095405547 6.886119055 7.374689562 38326687 katE Stress Oxygen stress Cochliobolus heterostrophus superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Cochliobolus; 6.975298011 7.029865593 6.708152554 6.480696034 161019619 lysin Bacteria phage LYSIS Bacillus phage bg1 7.000712073 6.77817348 7.110502975 126704142 pstB Stress Phosphate limitation Rhodobacterales bacterium HTCC2150 7.464026381 7.635243773 7.398475699 7.5588658 7.064848894 7.892892714 7.162689392 7.106352524 7.530983262 148652168 sigma_32 Stress Sigma factors Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 7.6457821 7.450596527 7.065017571 7.483701581 8.206006029 8.119598051 7.905672863 8.212678265 169258300 pstB Stress Phosphate limitation Anaerofustis stercorihominis DSM 17244 7.455064784 7.501055054 7.683973692 7.165112017 7.576570755 7.840654836 7.924539899 927653 endochitinase Carbon cycling Carbon degradation Chitin Kurthia zopfii superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Planococcaceae;genus:Kurthia; 7.50146407 7.477256423 242124012 sigma_32 Stress Sigma factors Desulfovibrio salexigens DSM 2638 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio salexigens; 7.090003614 7.494777991 7.197227911 7.101244645 7.418097862 18447901 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Alteromonas sp. O-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 6.87607096 7.19660225 211586305 cellobiase Carbon cycling Carbon degradation Cellulose Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 7.439585926 7.133185977 6.843624326 7.306989198 7.391289519 7.341312495 7.299805262 7.471094589 163261940 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 9.35480644 9.365986515 9.466242767 9.302542818 9.738403748 9.430306833 9.668511095 9.355331068 89054066 vanA Carbon cycling Carbon degradation Others Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 7.306786167 7.164258807 7.672440726 7.594393879 7.336517057 7.648179789 7.376191524 7.641906719 7.383961434 209527242 Al Metal Resistance Aluminum Arthrospira maxima CS-328 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira maxima; 6.894343119 7.356973366 91710107 ureC Nitrogen Ammonification Methylobacillus flagellatus KT superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 7.362220309 7.526455648 7.405735465 7.346899552 6.86051314 7.442214037 7.32468665 6.9872246 6.970368275 144947169 ChrA Metal Resistance Chromium Petrotoga mobilis SJ95 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Petrotoga;species:Petrotoga mobilis; 7.825653847 7.627630861 7.462788117 7.877442309 7.49720145 7.901537085 7.561317263 7.436925732 7.655338259 114227200 dsrA Sulphur sulfite reductase Alkalilimnicola ehrlichei MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 7.739893461 7.748800579 7.429938103 7.243667433 7.430201695 7.787293707 7.570177855 7.343723156 7.107684018 222421052 glnR Stress Nitrogen limitation Staphylococcus carnosus subsp. carnosus TM300 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus carnosus; 7.202348327 7.1015491 7.450894889 7.358465833 7.03892077 7.050404607 7.300924794 7.412338046 71280187 amyA Carbon cycling Carbon degradation Starch Colwellia psychrerythraea 34H superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Colwelliaceae;genus:Colwellia;species:Colwellia psychrerythraea; 7.06027013 7.017103611 14273642 gyrB other category gyrB Mycobacterium malmoense superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.924111898 7.666273561 7.633016116 7.770019959 7.395890854 7.615262155 7.632555962 7.74211197 37679009 grpE Stress Heat shock Vibrio vulnificus YJ016 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 7.345644312 7.536019201 83633890 endochitinase Carbon cycling Carbon degradation Chitin Hahella chejuensis KCTC 2396 7.226385412 7.203244997 7.232433215 7.221835336 7.205217199 7.703362481 7.268712259 7.334514687 119697810 CopA Metal Resistance Copper Mycobacterium sp. KMS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.849777745 7.644672735 7.627973098 7.271211576 7.383378598 7.800567473 7.452859216 7.047217093 6.981304007 86607249 sigma_70 Stress Sigma factors Synechococcus sp. JA-3-3Ab superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.022063478 7.276304657 7.145845136 7.114357103 7.256671261 52840803 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Legionella pneumophila subsp. pneumophila str. Philadelphia 1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella;species:Legionella pneumophila; 7.349757079 6.917598427 71395672 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 7.323078867 7.928975088 7.97732547 7.538307412 7.629512161 7.649560231 7.77244078 7.614066374 113896409 chnB Organic Remediation Other Hydrocarbons Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 7.10376443 7.071113177 222102114 Catechol Organic Remediation Aromatics Other aromatics Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.264031424 7.321039192 6.872821827 6.921900785 7.455419967 7.400148789 7.306048099 161390319 pstC Stress Phosphate limitation Phaeobacter gallaeciensis BS107 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 7.889654519 7.535360944 7.493903427 7.305732292 7.713023901 240102238 ahpF Stress Oxygen stress Thermococcus gammatolerans EJ3 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus gammatolerans; 8.288422262 7.916783188 7.563355683 7.312020822 7.25907518 7.832951503 7.746821523 7.487840471 8.101864284 259486900 ara_fungi Carbon cycling Carbon degradation Hemicellulose Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 8.131605791 8.024281837 7.707599221 7.574991273 7.756395318 8.099389015 7.972054475 8.283130335 91708846 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Methylobacillus flagellatus KT superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 6.728801407 6.967692229 71005632 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Ustilago maydis 521 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Ustilaginomycetes;order:Ustilaginales;family:Ustilaginaceae;genus:Ustilago;species:Ustilago maydis; 7.993521896 7.476901493 7.75977553 7.894247959 8.107743903 8.264207491 8.132294439 7.786725217 8.05744432 217501970 glucoamylase Carbon cycling Carbon degradation Starch Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 7.822795496 7.624357821 7.633154712 7.044942161 7.38818075 8.046384099 7.77897074 7.606874873 7.303512979 163735159 SMR_antibiotics Antibiotic resistance transporter Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 7.232179165 7.314280434 7.176727419 6.772996453 7.068531037 7.439273381 7.334187872 6.895786468 134137787 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 8.292574592 8.128655838 7.752922799 7.189557455 7.820061789 8.117815469 7.841342307 7.758072953 7.674318755 89512944 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.176573481 6.913989244 219678368 pcc Carbon cycling Carbon fixation gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.062934806 8.136292944 8.078437293 7.600957776 8.314023183 8.181323655 8.321651536 8.03656136 7.959513106 229840921 iro virulence Yersinia pestis biovar Orientalis str. PEXU2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia pestis; 7.678827692 7.352628066 7.402491191 7.130148489 7.714100187 7.776320662 7.352265162 7.488600141 7.64591536 213978059 amyA Carbon cycling Carbon degradation Starch Salmonella enterica subsp. enterica serovar Typhi str. AG3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 7.571272627 7.765773266 8.094965252 7.614723948 7.895934762 7.92415769 7.748339125 7.830810162 7.858175027 111918700 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.699391202 7.31546637 7.226614128 7.198842876 7.142137749 7.663219784 7.382036556 7.238093898 222099725 ChrA Metal Resistance Chromium Thermotoga neapolitana DSM 4359 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga;species:Thermotoga neapolitana; 7.228891285 6.962172308 212639235 cspB Stress Cold shock Anoxybacillus flavithermus WK1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Anoxybacillus;species:Anoxybacillus flavithermus; 7.36765885 7.355058187 7.220520543 7.01844845 7.819179998 7.236985343 7.069024329 7.449401843 83851060 pcc Carbon cycling Carbon fixation Oceanicaulis alexandrii HTCC2633 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis;species:Oceanicaulis alexandrii; 7.819419388 7.697126636 7.422174861 7.178341961 6.904083392 7.698393827 7.150304661 7.175568346 91710661 sigma_70 Stress Sigma factors Methylobacillus flagellatus KT superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 6.921256868 6.867412307 7.342299084 189424457 silC Metal Resistance Silver Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 7.515242848 7.613160602 7.51192642 7.805884346 7.616661669 7.799182816 7.715980519 7.516436939 7.598369751 270209372 single_strand_annealing_protein Bacteria phage REPLICATION Enterococcus phage phiFL2A order:Caudovirales;family:Siphoviridae; 6.864955218 7.589600963 7.220098929 6.78003332 7.334765226 7.07177612 7.45524454 62390074 narI Stress Oxygen limitation Corynebacterium glutamicum ATCC 13032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 7.880517153 7.694407513 7.489722115 7.718604972 7.768255201 7.792617015 7.98952587 7.672692151 7.693144571 167356205 pstA Stress Phosphate limitation Shewanella halifaxensis HAW-EB4 6.671729661 6.993145492 7.589391061 242775997 iro virulence Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 7.513003944 7.504574544 7.355632363 7.172902859 7.591509843 134053038 hrcA Stress Heat shock Desulfotomaculum reducens MI-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum reducens; 7.337781252 7.289508469 7.52544659 7.351757066 7.397046476 7.327113964 7.331227145 7.791489767 258526328 nrfA Nitrogen Dissimilatory N reduction Desulfurivibrio alkaliphilus AHT2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfurivibrio;species:Desulfurivibrio alkaliphilus; 9.405140319 8.901441587 9.035994403 118054153 bclA Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.488650423 8.510024828 8.113818412 7.964080145 8.408012675 7.906706272 8.410096402 8.331242409 8.615906902 116250315 pstC Stress Phosphate limitation Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.1834016 7.516293953 7.377296015 7.080316413 7.146730962 7.591091279 7.219529604 7.163810221 7.121822629 218667357 atzD Organic Remediation Herbicides related compound Acidithiobacillus ferrooxidans ATCC 23270 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 7.666869511 7.454797702 7.615351195 8.018559689 7.681670909 7.605987685 7.305380944 7.134412437 145240953 nitA Organic Remediation Aromatics Other aromatics Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.193259593 7.729084254 7.628963669 7.622230823 6.759107034 8.062315535 7.136515119 7.360376429 7.540141154 238868619 AceA Carbon cycling Carbon degradation others Edwardsiella ictaluri 93-146 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella ictaluri; 7.212730131 7.180545077 7.203007122 7.080502562 6.678347122 7.080875367 7.048590442 7.552207073 171674229 napA Nitrogen Dissimilatory N reduction Sulfurospirillum arsenophilum superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Sulfurospirillum; 7.01932769 6.938713315 7.028910784 7.464952208 110279640 CusC Metal Resistance Copper Cytophaga hutchinsonii ATCC 33406 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Cytophaga;species:Cytophaga hutchinsonii; 7.20473027 7.322814207 67903300 katE Stress Oxygen stress Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.120311992 7.536839324 7.454534275 6.867886946 7.532620942 7.342161649 7.136990275 7.193036406 192824219 DNA_polymerase_type_I Bacteria phage REPLICATION Mycobacterium phage Pukovnik order:Caudovirales;family:Siphoviridae; 7.204268817 7.338212524 7.324129187 6.538931089 7.017674673 6.881332277 7.535179429 56809415 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.169779537 7.188984401 7.184804484 6.806008715 6.558799189 7.523570829 7.026717382 6.967948839 7.326191133 212535182 nagG Organic Remediation Aromatics Aromatic carboxylic acid Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.576867666 8.017189604 7.539413346 7.619083223 7.935122679 7.962959469 7.95065898 7.928067137 256686824 pstB Stress Phosphate limitation Jonesia denitrificans DSM 20603 7.320526135 7.170744235 39647306 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.851672583 7.366351148 7.466062862 7.61055136 7.666440694 8.025132801 7.704397107 7.643592656 7.43199675 84619439 phytase Phosphorus Phosphorus utilization Hypocrea lixii superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 7.342796582 7.251159379 126625746 TehB Metal Resistance Tellurium Flavobacteria bacterium BAL38 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales; 7.054903276 6.963915065 7.120309678 6.76611341 7.300945325 254508209 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.197773186 7.061866658 7.11694742 254361386 napA Nitrogen Dissimilatory N reduction Mannheimia haemolytica PHL213 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Mannheimia;species:Mannheimia haemolytica; 7.29032701 7.279052996 7.152507153 6.967382114 6.947603481 7.353859629 7.290399129 7.205428645 6.857080552 213964605 oxyR Stress Oxygen stress Corynebacterium amycolatum SK46 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium amycolatum; 7.191667716 7.63695586 7.184229173 7.304094824 7.674522156 7.235638645 7.478860242 201066457 endoglucanase Carbon cycling Carbon degradation Cellulose Trichoderma sp. SSL superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Trichoderma; 7.294931006 7.245915412 7.339781063 7.156597217 7.838378493 7.118699592 7.327223158 7.34463197 157376383 katE Stress Oxygen stress Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 7.322846457 7.042471604 70673013 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.125048772 7.182722709 7.100150582 6.925899353 6.947153733 7.544907635 7.234711145 6.897893066 7.346121156 70930932 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.799824245 7.660679002 7.579572358 7.471144239 7.630671911 8.112969605 7.748370005 7.498719512 7.755237494 91699576 xylC Organic Remediation Aromatics BTEX and related aromatics Polaromonas sp. JS666 9.190985359 9.254485817 9.12558863 91975097 katE Stress Oxygen stress Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.316062541 7.456042491 7.338524164 7.18002163 6.980607409 7.473845616 7.436183789 6.989959545 7.625190969 241775656 AceA Carbon cycling Carbon degradation others Allochromatium vinosum DSM 180 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 7.845343279 7.950885638 7.847649407 7.453421438 7.857263994 7.874665827 7.826634522 7.698277247 7.591132596 116625265 pilin virulence pilin Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 7.69237464 7.613845925 7.41040419 7.495049634 7.096508389 7.275915295 7.433472084 7.373478742 118002628 CopA Metal Resistance Copper Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.338112335 8.183709606 8.376452544 8.263547977 8.662994117 8.491944081 8.897312714 8.662657705 8.536236895 227235220 sigma_70 Stress Sigma factors Anaerococcus lactolyticus ATCC 51172 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Anaerococcus;species:Anaerococcus lactolyticus; 7.1265002 6.813705711 7.121638189 110549561 nifH Nitrogen Nitrogen fixation Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 7.972302312 7.647152029 7.59044096 7.589318069 7.537403209 7.769598597 7.605537553 7.158728573 7.518098271 189915715 CopA Metal Resistance Copper Actinobacillus pleuropneumoniae serovar 7 str. AP76 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus pleuropneumoniae; 7.586135796 7.413172544 7.260031898 7.642710656 7.474186765 8.094929205 242266256 proV Stress Osmotic stress Thermococcus sibiricus MM 739 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus sibiricus; 7.376776425 7.577870663 7.508149762 6.863705309 7.310945183 7.06063729 126630733 linB Organic Remediation Pesticides related compound Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 8.177055697 7.906426033 7.657501032 7.723226403 7.860667185 8.415147236 8.084303156 8.127628768 8.016116985 52081033 pstA Stress Phosphate limitation Bacillus licheniformis ATCC 14580 7.36954899 7.473070193 7.307265856 7.042451195 7.083193146 7.881892568 7.395901877 7.163969549 7.302889116 118073645 nitA Organic Remediation Aromatics Other aromatics Shewanella woodyi ATCC 51908 7.376102672 7.44722178 7.406848259 7.935808591 214041912 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.756712424 7.884359019 7.67884858 8.018303914 8.143239371 8.121422737 8.282019406 8.062144265 7.846782196 163743926 sox Sulphur Sulphur oxidation Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 7.917409737 7.862120263 7.604259886 7.646169416 7.73173273 153955081 SMR_antibiotics Antibiotic resistance transporter Clostridium kluyveri DSM 555 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium kluyveri; 7.144236539 7.031679893 255059248 hydrogenase Energy process Energy process Geobacter sp. M18 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 7.979582181 7.817696622 7.501282338 7.565675631 7.770686992 8.115026421 7.351332765 7.390692788 7.741607544 211585334 ChrA Metal Resistance Chromium Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 7.427943201 7.426892657 7.210717916 7.273573314 7.803888965 7.746687679 7.837195177 7.73242271 260540712 amyA Carbon cycling Carbon degradation Starch Blautia hansenii DSM 20583 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Blautia;species:Blautia hansenii; 7.145594769 7.631709515 67904022 tftH Organic Remediation Aromatics Chlorinated aromatics Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 8.115450716 7.925904799 7.544795612 7.991565621 8.049217121 8.178505216 7.781266457 8.161355321 7.539180022 51243029 exoglucanase Carbon cycling Carbon degradation Cellulose Penicillium occitanis superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 7.51538847 7.492284817 7.594436518 7.08163406 7.516256076 7.765352251 7.687151781 7.514976964 7.394736102 89087667 katE Stress Oxygen stress Bacillus sp. NRRL B-14911 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.799804822 7.918828771 7.486449159 7.452408362 7.454601363 7.946688308 7.560669368 7.289186513 7.515233872 148851958 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Bacillus sp. SG-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.410315566 7.361658165 7.02327074 7.475751163 7.064366484 7.123307889 12667638 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium UMTRAdsr624-12 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 7.766382922 7.238481166 7.673055964 7.391284289 7.788825036 115389110 ara_fungi Carbon cycling Carbon degradation Hemicellulose Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.642373457 7.263838655 7.529007478 7.382323352 7.333074467 7.631255207 206896509 ChrA Metal Resistance Chromium Coprothermobacter proteolyticus DSM 5265 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermodesulfobiaceae;genus:Coprothermobacter;species:Coprothermobacter proteolyticus; 7.637247534 7.7567965 7.686162494 7.219206457 7.474637272 7.629931853 7.500890921 7.576295001 7.527095972 3184131 tutFDG Organic Remediation Aromatics BTEX and related aromatics Thauera aromatica superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 7.715640318 7.566640161 7.808483209 7.526314353 7.242495015 7.870461335 7.579532879 7.494489762 7.689353373 214039093 ppk Phosphorus Phosphorus utilization marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.045060897 7.79645446 7.893623516 7.796797795 7.924694971 7.208349821 8.059068722 7.898555685 7.588060955 223585975 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.258836481 8.102380546 8.022549781 7.773760935 8.091390058 7.77663982 8.240539591 8.263535187 41398598 adpB Organic Remediation Pesticides related compound Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 7.842159928 7.753037061 7.219397152 7.437513133 7.790470447 7.950292985 7.736741873 7.719851223 7.799920343 15621097 cytochrome_b Bioleaching Electron transport Sulfolobus tokodaii str. 7 6.995516872 6.919362881 280963823 SMR_antibiotics Antibiotic resistance transporter Frankia sp. EuI1c superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 7.660403337 7.658749825 7.606326489 7.636371844 7.991474557 8.252371421 8.161347893 7.993663094 7.909254111 268163384 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Photobacterium damselae subsp. damselae CIP 102761 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium damselae; 7.869499336 7.37470221 7.065663113 6.791608483 7.675533502 253577313 pstC Stress Phosphate limitation Paenibacillus sp. oral taxon 786 str. D14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 7.354175536 7.469379981 7.140958805 6.856614674 7.703578376 7.289159079 7.198110799 7.239765821 118702815 vdh Carbon cycling Carbon degradation Others Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 7.433433697 7.815279996 7.710469869 145846487 atzA Organic Remediation Herbicides related compound Ruminococcus torques ATCC 27756 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus torques; 7.431298779 7.447528251 7.395923841 7.063071778 6.921263742 7.719552165 190890495 ppx Phosphorus Phosphorus utilization Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.811633495 7.87209122 7.903438357 7.986539544 7.825290578 8.096704203 7.868484672 7.813653372 7.915971082 88800368 hly virulence hemolysin Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 7.652434481 7.497214989 7.89440958 7.371763484 7.347210767 7.510145696 238885860 obgE Stress Radiation stress Selenomonas flueggei ATCC 43531 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas flueggei; 7.411666121 7.578810922 7.495258126 6.951301043 7.549447889 7.452751629 7.643110523 7.47085331 7.581266754 9864058 chnB Organic Remediation Other Hydrocarbons Brevibacterium sp. HCU superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium; 7.349275522 7.262975891 7.290844602 6.685042215 6.845179548 7.437915334 6.970974587 6.976089306 82698269 nifH Nitrogen Nitrogen fixation uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 7.719858197 7.576643259 7.511070548 7.390816087 7.542979995 7.259631804 7.666089337 7.459312995 15023817 endoglucanase Carbon cycling Carbon degradation Cellulose Clostridium acetobutylicum ATCC 824 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium acetobutylicum; 6.893885305 7.220082029 167712722 Al Metal Resistance Aluminum Clostridium sp. SS2/1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 7.390375354 7.16352759 227544906 sigma_70 Stress Sigma factors Lactobacillus reuteri CF48-3A superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus reuteri; 7.399780313 7.59455564 7.499270235 7.361609419 7.289042139 7.51702441 260858814 Tet Antibiotic resistance other Leptotrichia hofstadii F0254 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteria;order:Fusobacteriales;family:Fusobacteriaceae;genus:Leptotrichia;species:Leptotrichia hofstadii; 6.883829353 7.315904519 7.11853556 6.871008627 7.477087661 118414534 sigma_70 Stress Sigma factors Campylobacter fetus subsp. fetus 82-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter fetus; 7.304755714 7.481804815 46201792 nosZ Nitrogen Denitrification Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 7.383628922 7.454836125 7.092120515 7.086626373 7.931277764 7.359404743 7.1350686 7.534611609 282599885 vip virulence virulence protein Providencia rustigianii DSM 4541 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 6.618552471 7.416381837 116688200 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia cenocepacia HI2424 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 7.957409426 7.690350272 7.881955776 7.824611651 7.459982554 7.880812688 7.480814257 7.564439288 7.524603074 37956527 gyrB other category gyrB Trichlorobacter thiogenes superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 7.865851254 7.807074585 7.675110168 7.833609888 7.763531536 8.182465802 7.707636205 7.569079004 7.26883039 56809517 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.553384251 7.403544304 7.645087852 7.584343082 7.526671215 7.80553172 7.451423695 7.096379622 7.240894335 149275888 grpE Stress Heat shock Pedobacter sp. BAL39 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter; 7.673385548 7.313010643 7.322127692 38639944 sliding_clamp_T4 Bacteria phage REPLICATION Aeromonas phage Aeh1 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.174778821 7.155505237 7.091675264 7.004789065 7.387772943 7.3763183 7.058854795 194343492 TerD Metal Resistance Tellurium Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7.850354367 7.74826505 7.558292848 7.535496177 7.592551532 7.918636478 7.594321198 7.419730362 7.489814703 119814165 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.869971571 7.622940817 7.530268956 7.31468752 7.736163989 7.924044784 7.646514206 7.318845957 7.508927785 56809499 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.870750324 7.634652943 7.612304427 7.560889239 7.552670017 7.930487086 7.482894988 7.611377913 7.504627058 115259316 nmoA Organic Remediation Aromatics Nitoaromatics Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.698012982 7.754902976 7.891263295 7.815490412 8.188140221 8.164506018 7.974087716 7.935988146 7.822417644 145322200 cumA Organic Remediation Aromatics Other aromatics Novosphingobium aromaticivorans DSM 12444 8.147437586 8.060087294 7.64322472 7.720517826 8.328370622 8.122548631 8.193728842 7.94865711 8.192470532 47558258 TerD Metal Resistance Tellurium Bacillus cereus G9241 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 7.399198959 7.099836918 7.198659099 7.073670175 7.442512489 7.170552913 7.072219858 7.08273799 86169515 dnaK Stress Heat shock Leuconostoc pseudoficulneum 7.067520585 6.895550798 212671399 primase Bacteria phage REPLICATION Kluyvera phage Kvp1 7.339928381 7.182289431 7.127171337 7.191293265 7.36793166 7.205152901 7.265389481 7.215178571 126725631 glnA Stress Nitrogen limitation Rhodobacterales bacterium HTCC2150 8.16476355 8.187251281 7.934730466 7.518632227 7.831181374 8.00226296 8.041486191 8.159619534 8.113643646 61393951 terminal_protein_linear_DNA_phage Bacteria phage REPLICATION Enterobacteria phage L17 family:Tectiviridae;genus:Tectivirus;species:Enterobacteria phage PRD1; 7.619029339 7.52933622 7.414222638 7.246567561 7.626013098 7.614281607 7.788334435 7.433758152 7.702205635 157962601 pimF Organic Remediation Aromatics Aromatic carboxylic acid Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 7.466306797 7.700021468 7.844983095 7.853358009 7.16079267 7.971196287 7.554108149 7.405661926 7.732987301 152969755 endochitinase Carbon cycling Carbon degradation Chitin Klebsiella pneumoniae subsp. pneumoniae MGH 78578 7.856688952 7.829322155 7.841978425 7.678370368 7.93488969 7.82948886 7.954869432 7.961822041 112464041 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.166246256 7.486179121 119387853 iro virulence Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.160129026 8.514855547 8.053758344 7.961290854 8.500296799 8.520841341 8.28267974 8.19307679 88860251 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudoalteromonas tunicata D2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas tunicata; 7.127677726 6.923589885 7.383918158 7.550291339 6.975915679 7.85858516 7.002780538 6.970013198 7.550616803 76666837 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.091339158 6.804080895 10039319 gyrB other category gyrB Flexibacter sancti superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;genus:Chitinophaga; 6.895092919 7.062692314 7.345161443 7.030507675 7.3556738 144788 xylA Carbon cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Thermoanaerobacterium; 7.081536259 7.132428185 7.243653155 7.161079495 7.800429712 7.170836862 7.311925457 260220187 xylA Carbon cycling Carbon degradation Hemicellulose Curvibacter putative symbiont of Hydra magnipapillata superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 8.158000466 8.142661801 7.986015556 8.090203469 7.85400264 8.022714502 7.521740229 7.601487877 7.773920241 34849451 pstB Stress Phosphate limitation Spiroplasma kunkelii 7.346364765 7.288567112 7.047662549 6.873613599 7.433596655 258569056 glnA Stress Nitrogen limitation Uncinocarpus reesii 1704 7.208578514 7.324503209 7.32784544 6.921749264 6.852769189 7.501654774 7.407281164 7.27585455 7.080924295 21647735 ArsC Metal Resistance Arsenic Chlorobium tepidum TLS superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 7.833257522 7.625040594 7.515891283 7.034320354 7.316357248 7.121859329 7.211371918 7.510813164 187928448 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Ralstonia pickettii 12J 7.544875296 7.572706039 7.710100543 7.796348513 7.529564346 7.929399678 7.628802573 7.713190606 7.571023888 27381288 cellobiase Carbon cycling Carbon degradation Cellulose Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.483403108 7.604424229 7.768212653 7.601359555 7.416281652 8.246491537 7.33837345 7.245459373 7.537502669 142850471 CadA Metal Resistance Cadmium Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 7.72154978 7.439829833 7.259950795 7.353279434 7.006084226 7.542561391 121710292 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7.918602312 7.672252665 7.536618326 7.605071589 8.298529585 8.097104553 7.746126081 8.102157855 208609104 rd Organic Remediation Chlorinated solvents uncultured bacterium superkingdom:Bacteria; 7.326573985 7.13122427 7.073862717 6.876789224 7.452582894 7.214954553 14276188 dsrA Sulphur sulfite reductase Desulfosarcina variabilis superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfosarcina; 7.988569498 8.019061384 7.966647777 8.063846761 8.25369248 8.275263039 8.335618072 8.437848414 8.240891856 167661192 pstB Stress Phosphate limitation Clostridium scindens ATCC 35704 7.05394804 7.281704104 116096307 ppx Phosphorus Phosphorus utilization Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc mesenteroides; 7.510874955 7.520586179 7.524324571 7.094880474 6.912349368 7.970505591 7.144370054 7.546818801 151561730 SMR_antibiotics Antibiotic resistance transporter Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 7.430108074 8.084216899 8.357346294 8.95518021 7.921488548 8.789162591 8.091878953 7.997663004 8.360670639 145563363 pilin virulence pilin Shewanella putrefaciens CN-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella putrefaciens; 8.811795259 8.847931084 8.844151478 9.322317791 8.665838377 225907093 amoA Nitrogen Nitrification superkingdom:Bacteria; 6.943195604 6.831874998 7.071738918 7.010738735 7.295364972 7.249803992 6.841037036 6.916210173 41078903 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.455283016 7.355490119 7.297272683 7.191528991 7.320319847 7.717448141 7.405038839 7.238885228 7.326080058 56477212 pchA Organic Remediation Aromatics BTEX and related aromatics Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 7.913263525 7.898756104 7.556352389 7.290254698 7.994543488 6.992211662 7.693775441 167771065 bglP Stress Glucose limitation Anaerotruncus colihominis DSM 17241 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Anaerotruncus;species:Anaerotruncus colihominis; 7.790455763 7.623369844 7.820864983 7.27917269 7.648216144 7.699085159 7.607122488 7.925437378 7.605717796 222443683 hly virulence hemolysin Staphylococcus capitis SK14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus capitis; 7.283965564 7.222438068 7.429237953 7.329154607 6.67342315 7.714135153 7.200300537 7.040419358 7.328081251 149142093 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.880141552 8.673673255 8.294891588 8.68539732 9.143907163 8.597618237 8.61847254 8.121803436 8.661925302 78102047 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.539846465 7.800463484 7.798786283 7.94207783 7.268372084 7.610830552 7.593536137 7.746346141 159179679 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 8.969685805 9.115470881 9.02066366 56179617 aclB Carbon cycling Carbon fixation Idiomarina loihiensis L2TR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina loihiensis; 7.562977983 7.547907796 7.474887515 7.257130041 7.071097073 7.580447043 7.503829544 7.809259065 7.764903707 88926303 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 7.84648824 7.848528866 7.722175106 7.525399328 7.982863552 8.210082462 7.997595316 7.945398456 7.876226212 187929954 hrcA Stress Heat shock Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 7.753753515 7.740002373 7.529047731 7.226718075 7.856661298 7.750719586 7.587183874 7.632652975 7.798000277 192799554 ara Carbon cycling Carbon degradation Hemicellulose Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.733991573 7.767199053 7.820988401 7.438459076 7.967934292 7.866282155 7.85289642 7.831013489 7.356730292 117577042 sigma_24 Stress Sigma factors Gramella forsetii KT0803 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Gramella;species:Gramella forsetii; 7.376123692 7.029282134 7.278838843 148974089 pulA Carbon cycling Carbon degradation Starch Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 6.818113088 7.515379424 74421980 rubisco Carbon cycling Carbon fixation Nitrobacter winogradskyi Nb-255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 7.311134634 7.200245767 7.167576031 6.952946481 7.653076081 7.121801643 7.085152442 7.111299749 33520860 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.686211904 7.675892012 7.425214471 7.514432395 257060463 amyA Carbon cycling Carbon degradation Starch Cyanothece sp. PCC 8802 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.003506521 7.216659519 6.898553101 237800546 AceA Carbon cycling Carbon degradation others Pseudomonas syringae pv. oryzae str. 1_6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 7.242701762 7.721671634 7.717930414 6.947673274 7.254355115 7.263606025 7.801614331 227438055 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.221113492 7.118553173 7.145704688 7.28948435 7.106273939 7.512009599 7.626688666 7.220117319 7.8875991 27904006 MATE_antibiotic Antibiotic resistance transporter Buchnera aphidicola str. Bp (Baizongia pistaciae) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Buchnera;species:Buchnera aphidicola; 7.298167783 7.13706844 6.958362686 7.23333653 222147307 ChrA Metal Resistance Chromium Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 7.447409146 7.359286716 7.504316446 7.119998824 7.602145015 7.263245465 7.367243093 229321554 katE Stress Oxygen stress Rhodococcus erythropolis SK121 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 8.366855214 8.423879479 7.874575544 8.01610034 8.497348301 8.230133225 8.427063937 8.245854535 8.328333312 68542264 amyA Carbon cycling Carbon degradation Starch Shewanella baltica OS155 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 7.358846845 7.17437912 134050911 TerD Metal Resistance Tellurium Desulfotomaculum reducens MI-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum reducens; 7.293871548 7.051499951 7.016977093 6.830832818 7.504140158 7.33036813 7.346783462 6.991325467 55377148 catB Organic Remediation Aromatics BTEX and related aromatics Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 7.033516677 7.05147483 7.159170043 6.985968389 7.76298544 7.056874559 7.127130347 7.177213516 226311436 obgE Stress Radiation stress Brevibacillus brevis NBRC 100599 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus brevis; 7.70012881 7.523392484 7.615085729 7.456639711 7.403802406 7.793924944 7.467479149 7.415312921 7.617857888 198209671 single_strand_annealing_protein Bacteria phage REPLICATION Bacteroides phage B40-8 order:Caudovirales;family:Siphoviridae; 7.018987636 6.977778512 7.150039173 6.811741013 6.771785477 7.381287072 7.175987785 7.22213641 11230870 cda Carbon cycling Carbon degradation Starch Thermococcus sp. B1001 7.208807029 7.022626567 7.165202172 6.884785697 7.546186439 6.781798564 6.762813347 37527623 type_III_secretion virulence secretion Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 8.366334021 8.120817664 8.232410264 8.064361047 7.840265774 8.055381011 8.04760519 8.234218283 39576461 cap virulence capsule Bdellovibrio bacteriovorus HD100 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 7.482193502 7.656441856 7.42365928 7.226819818 7.387511847 7.844140817 7.397739349 7.520978891 7.556228333 239909704 pstB Stress Phosphate limitation Thermococcus gammatolerans EJ3 7.920290682 7.059020774 7.359511696 6.880966355 7.598276637 7.150383229 7.705402683 168703058 ahpC Stress Oxygen stress Gemmata obscuriglobus UQM 2246 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata;species:Gemmata obscuriglobus; 7.487777769 8.050976803 7.947292506 8.107076215 8.294846163 8.434708889 8.240903405 8.342329771 15614543 katE Stress Oxygen stress Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 7.563688357 7.152177817 7.350242577 6.834888628 7.549353434 7.429861255 7.328370921 189218904 AceB Carbon cycling Carbon degradation others Methylokorus infernorum V4 superkingdom:Bacteria;phylum:Verrucomicrobia;order:Methylacidiphilales;family:Methylacidiphilaceae;genus:Methylacidiphilum;species:Methylacidiphilum infernorum; 7.063679167 7.349472994 94957830 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.425219918 7.287651781 7.020946254 7.134016303 6.752061452 7.342966685 7.190276034 7.275461769 7.278950348 219998976 ara Carbon cycling Carbon degradation Hemicellulose Clostridium cellulolyticum H10 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium cellulolyticum; 6.68685793 6.946710092 6.864084944 240172816 katE Stress Oxygen stress Mycobacterium kansasii ATCC 12478 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 7.613166939 7.762986847 7.377828124 7.25396023 7.339963573 7.56419718 7.324851544 8.047534007 152976745 grpE Stress Heat shock Bacillus cereus subsp. cytotoxis NVH 391-98 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cytotoxicus; 7.003156367 7.283696839 238794470 SMR_antibiotics Antibiotic resistance transporter Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 7.476211714 7.340648629 7.362036432 6.949786872 7.688306702 7.009873474 7.017094829 7.43877133 212527294 nagI Organic Remediation Aromatics Aromatic carboxylic acid Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.201887135 7.215792198 7.031032609 7.022039011 6.758273575 7.379189867 6.939062355 6.99488713 7.365754008 229086581 nplT Carbon cycling Carbon degradation Starch Bacillus cereus Rock3-44 7.72716389 7.490008184 7.671044623 7.674957473 7.058033977 7.263662919 7.431977939 7.402234649 27378197 ArsC Metal Resistance Arsenic Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.147639626 7.580596414 7.434540446 7.381969353 6.988557019 7.68875228 7.355011314 7.448058694 7.525366171 75908694 pstB Stress Phosphate limitation Anabaena variabilis ATCC 29413 7.266192893 6.948818441 7.098337022 6.856215546 7.307217918 19070841 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 6.884640603 7.077844511 256086030 Tet Antibiotic resistance other Schistosoma mansoni superkingdom:Eukaryota;kingdom:Metazoa;phylum:Platyhelminthes;class:Trematoda;order:Strigeidida;family:Schistosomatidae;genus:Schistosoma; 6.974109562 6.76943364 6.700948887 7.311459526 50541861 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.488925392 7.733691276 8.082979639 7.82242144 7.969916585 8.310013297 7.739649919 8.19297558 7.875634577 118589376 fnr Stress Oxygen stress Stappia aggregata IAM 12614 8.396850107 8.486918284 8.357442528 8.054991507 8.53574102 8.228552772 8.415051782 8.328878477 8.225425629 225025101 sigma_70 Stress Sigma factors Eikenella corrodens ATCC 23834 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Eikenella;species:Eikenella corrodens; 7.869748399 7.700663034 7.636927191 7.461650208 7.648696991 7.873407929 7.603976816 7.706179928 7.474442627 218266101 ChrA Metal Resistance Chromium Clostridium hylemonae DSM 15053 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 7.480079008 7.234714718 7.374831635 7.155684559 7.054555826 93006583 silC Metal Resistance Silver Psychrobacter cryohalolentis K5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter cryohalolentis; 6.743486852 7.480649623 270510903 B_lactamase_C Antibiotic resistance Beta-lactamases Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 7.588297174 7.73571133 7.523426921 7.157118119 7.260011596 7.985840682 7.519939629 7.353047208 150837611 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Marinomonas sp. MWYL1 7.54651192 7.260040722 7.815490251 7.820643355 7.27258228 8.030586449 7.175496666 7.329871162 7.467638581 148572948 pcc Carbon cycling Carbon fixation Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 7.797860423 7.314869361 8.012650306 7.568673928 7.064607537 7.710928911 7.593300726 7.907024468 187773678 CadA Metal Resistance Cadmium Clostridium sporogenes ATCC 15579 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium sporogenes; 6.952715631 7.076603872 7.013934692 7.340732915 7.231009902 7.611550926 198248978 sigma_32 Stress Sigma factors Acidithiobacillus ferrooxidans ATCC 53993 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 7.111768265 6.64283341 7.839251233 220907979 fnr Stress Oxygen stress Cyanothece sp. PCC 7425 7.559363906 7.447098706 7.45397993 7.661555098 6.981372255 8.081580736 7.228739395 7.153938513 7.299143593 118642319 pbrA Metal Resistance Lead Burkholderia ambifaria MC40-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 7.305174067 7.75959948 7.334765226 7.532530301 70731221 catB Organic Remediation Aromatics BTEX and related aromatics Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.457387747 7.612864384 8.069039958 7.344853218 7.505862467 7.678229857 157911963 cellobiase Carbon cycling Carbon degradation Cellulose Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 7.065038255 7.14717196 160901913 CopA Metal Resistance Copper Petrotoga mobilis SJ95 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Petrotoga;species:Petrotoga mobilis; 7.067174648 7.078412889 7.056809569 6.716684549 119369926 gyrB other category gyrB uncultured bacterium 7.266200362 7.530987531 120326031 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 7.910219656 7.627936238 7.490860125 7.205400892 7.354855502 7.965375467 7.684223818 7.909047347 211584839 CopA Metal Resistance Copper Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 7.397918598 7.563279099 7.333413313 7.114874766 7.186045403 7.003138913 7.538803032 261360375 katE Stress Oxygen stress Verticillium albo-atrum VaMs.102 7.265104456 7.316278973 7.208685097 7.340027484 7.031363097 7.726802303 7.04521555 7.015607586 6.825867468 112981044 sigma_70 Stress Sigma factors Brachymonas denitrificans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Brachymonas; 7.27755176 7.514195672 7.660355993 6.846381281 7.231785729 7.30054174 8.026065328 123962724 sigma_70 Stress Sigma factors Prochlorococcus marinus str. MIT 9303 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 7.741726624 7.375066532 7.299414894 7.417615957 7.361099446 7.589722085 78611034 clpC Stress Protein stress Lactobacillus sakei subsp. sakei 23K superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus sakei; 7.102070817 7.204884367 6.91913665 7.464268282 114552638 pstB Stress Phosphate limitation Mariprofundus ferrooxydans PV-1 7.482395094 7.593023572 7.459110459 7.566652696 7.12436118 7.723646317 7.177154438 7.191396947 7.452876795 46579701 narI Stress Oxygen limitation Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 7.595334193 7.556930846 7.409736686 7.203595374 7.705355328 7.993911814 7.734132981 7.393783983 7.7016833 40362781 nosZ Nitrogen Denitrification uncultured soil bacterium superkingdom:Bacteria; 7.32641441 7.350402686 7.639330986 7.816935776 6.896083259 7.718061249 194309215 pstB Stress Phosphate limitation Pelodictyon phaeoclathratiforme BU-1 7.726971396 7.613467302 7.43226683 7.462568441 7.575424357 7.943960511 7.429891737 7.591982518 7.428888498 161527607 grpE Stress Heat shock Nitrosopumilus maritimus SCM1 superkingdom:Archaea;phylum:Thaumarchaeota;order:Nitrosopumilales;family:Nitrosopumilaceae;genus:Nitrosopumilus;species:Nitrosopumilus maritimus; 7.478410653 7.367061901 7.084648793 6.767951397 7.511189155 6.969211067 7.010108574 7.075901746 262260355 MFS_antibiotic Antibiotic resistance transporter Acinetobacter calcoaceticus RUH2202 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter calcoaceticus; 8.269104455 8.265612155 7.798633556 8.33705251 8.005547653 8.044984734 8.138148597 8.581328294 78061637 vanA Carbon cycling Carbon degradation Others Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.666018538 7.61764185 7.786417202 7.596468737 7.52310787 7.951366155 7.64235637 7.371032507 7.548430087 145219279 rubisco Carbon cycling Carbon fixation Prosthecochloris vibrioformis DSM 265 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeovibrioides; 7.931695598 8.196889167 8.08268915 8.260867635 8.491451588 8.42709001 8.720669935 8.620838997 150032759 fnr Stress Oxygen stress Sinorhizobium medicae WSM419 7.457421208 6.993334895 7.640992013 7.560470373 7.141590828 7.367660388 7.489757219 198253442 ppx Phosphorus Phosphorus utilization Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 7.605410419 7.303377281 7.404170836 7.41152473 7.609176242 7.264495927 7.949728391 7.817222185 7.971956477 145243374 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.927711979 7.881592477 7.661402286 7.765301918 7.654550378 7.836611501 7.860948299 7.631822665 7.561210499 150397197 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 8.080182258 7.850902672 7.698571302 7.732730278 7.762390905 8.245233376 7.820091449 7.656323728 7.777810918 157804872 AprA Sulphur adenylylsulfate reductase Thiobacillus plumbophilus 8.154650113 8.077790068 8.027624225 7.821744613 8.100391142 8.168638552 8.137995793 8.336093131 269789449 sigma_70 Stress Sigma factors Thermobaculum terrenum ATCC BAA-798 superkingdom:Bacteria;genus:Thermobaculum;species:Thermobaculum terrenum; 7.192053824 7.041636086 7.35192391 7.14048803 7.115935148 188931600 TehB Metal Resistance Tellurium Sulfurihydrogenibium sp. YO3AOP1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Hydrogenothermaceae;genus:Sulfurihydrogenibium; 7.552720301 7.291658524 39574238 ppx Phosphorus Phosphorus utilization Bdellovibrio bacteriovorus HD100 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 7.674041946 7.566315298 262221377 AceA Carbon cycling Carbon degradation others Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;species:Grimontia hollisae; 7.853610151 7.934394789 7.994734483 7.955387901 8.0670847 8.246818457 8.085054709 8.235925813 268320069 bglP Stress Glucose limitation Lactobacillus johnsonii FI9785 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus johnsonii; 7.752705908 7.658934753 7.551227484 146275730 CopA Metal Resistance Copper Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 7.624968876 7.652417315 7.259078998 7.712178081 7.573537676 7.81546542 7.58533409 7.324612126 7.284009882 221532319 dehH Organic Remediation Chlorinated solvents Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 7.280200638 7.781820454 7.382576148 7.265298676 7.753113025 7.439644113 7.89256429 7.974648819 82940309 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.122198334 7.012471234 6.59962226 7.419046471 56963217 alkH Organic Remediation Other Hydrocarbons Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 7.719392631 7.785195162 7.841903406 7.429666728 7.574275361 7.801013977 7.686490298 7.942113329 7.558633672 14582626 silC Metal Resistance Silver Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.295977946 7.31308682 7.408912973 6.926860126 7.705418177 6.906251763 7.143067451 7.373078344 227507350 hrcA Stress Heat shock Gardnerella vaginalis ATCC 14019 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Gardnerella;species:Gardnerella vaginalis; 7.737778742 7.56300508 7.563787822 7.693658633 7.116547579 7.60983323 7.606946762 7.860266317 158138848 narG Nitrogen Denitrification uncultured bacterium 7.926340646 7.684151947 7.519638048 7.480012417 7.657129723 7.855992313 7.592108025 7.510131481 7.476194919 527548 pheA Organic Remediation Aromatics Other aromatics Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.43668865 7.298160864 7.284759641 7.002237326 6.670113315 7.779591783 7.493058518 7.320482102 6.924280625 39574707 xylG Organic Remediation Aromatics Aromatic carboxylic acid Bdellovibrio bacteriovorus HD100 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 7.939456876 7.815148909 7.478075333 7.772091963 7.680542797 7.995316903 7.617971478 7.583815889 7.510142813 189424864 pstB Stress Phosphate limitation Geobacter lovleyi SZ 7.289363726 7.265078769 7.188662073 7.078014403 7.381410305 7.07578203 7.514110393 23099105 glnR Stress Nitrogen limitation Oceanobacillus iheyensis HTE831 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Oceanobacillus;species:Oceanobacillus iheyensis; 7.277874655 6.996317189 52082274 4HBH Organic Remediation Aromatics BTEX and related aromatics Bacillus licheniformis ATCC 14580 7.91266016 7.984254843 7.636351806 7.618473342 7.789435308 7.896430247 7.637963115 7.682812677 7.66254327 253701794 fnr Stress Oxygen stress Geobacter sp. M21 7.389523767 7.434147356 7.350286702 7.123547468 6.8439506 7.392559175 7.157514643 7.271772892 213536749 exoglucanase Carbon cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 6.992917799 7.41177311 7.159168822 6.771921208 7.604170005 7.044394866 7.432871053 110280967 B_lactamase Antibiotic resistance Beta-lactamases Cytophaga hutchinsonii ATCC 33406 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Cytophaga;species:Cytophaga hutchinsonii; 7.575086011 7.590215501 7.216658729 7.31376731 7.180056754 7.617989039 7.385662062 7.519077022 114770338 AceA Carbon cycling Carbon degradation others alpha proteobacterium HTCC2255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.009477273 7.225052655 219681354 primase Bacteria phage REPLICATION Erwinia phage phiEa21-4 7.227512028 6.951349708 6.966535514 6.618588654 6.777049476 7.406350519 6.809218841 7.01774554 118023161 silP Metal Resistance Silver Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 7.464009705 7.415104491 7.418925532 7.296348605 7.722784023 119456645 pulA Carbon cycling Carbon degradation Starch Lyngbya sp. PCC 8106 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Lyngbya; 7.713555642 7.791340962 7.669462975 7.669525326 7.443878743 7.753774352 7.707577297 7.565142962 7.918315316 184157694 4HBH Organic Remediation Aromatics BTEX and related aromatics Acinetobacter baumannii ACICU 7.0977543 7.395801867 112462199 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.657087566 7.707970054 7.562253215 7.404993497 7.537201184 8.112195864 7.620568331 7.300654418 7.596347407 171089015 adpB Organic Remediation Pesticides related compound Geobacillus sp. WCH70 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.315423695 7.068226628 6.964337334 6.89925894 7.392473693 217497066 iro virulence Shewanella baltica OS223 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 7.552885174 7.441702101 7.338366655 7.40724291 7.177860641 7.635690502 7.710763465 7.490409817 7.424872791 114547122 exaA Organic Remediation Chlorinated solvents alpha proteobacterium HTCC2255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.907153371 8.347096284 8.104949373 7.603654185 7.29264146 7.861356994 7.801332193 8.260395548 199590735 sigma_70 Stress Sigma factors Lactobacillus rhamnosus HN001 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 7.181131786 7.105904386 6.990073049 150408784 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Ajellomyces capsulatus NAm1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 7.185370112 7.276196811 7.456807242 7.411400911 7.192326546 7.469626682 229316639 sigma_70 Stress Sigma factors Porphyromonas endodontalis ATCC 35406 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas;species:Porphyromonas endodontalis; 7.535818286 7.700319864 7.624636856 6.660882225 7.738787556 7.05892181 6.888038716 7.583914844 255946135 glnA Stress Nitrogen limitation Penicillium chrysogenum Wisconsin 54-1255 7.791037165 7.501096193 7.649651673 7.107635836 7.570452461 7.539230963 7.847238447 7.895955495 81428154 BADH Organic Remediation Aromatics Other aromatics Lactobacillus sakei subsp. sakei 23K superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus sakei; 7.235815376 6.981443844 84382259 katE Stress Oxygen stress Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 7.266827701 7.2909703 7.590278443 7.191388474 7.483930933 7.659204556 7.636774126 7.338775289 7.736563583 146348978 fnr Stress Oxygen stress Clostridium kluyveri DSM 555 7.248779438 7.253554734 7.781723308 114338466 sigma_24 Stress Sigma factors Syntrophomonas wolfei subsp. wolfei str. Goettingen superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Syntrophomonadaceae;genus:Syntrophomonas;species:Syntrophomonas wolfei; 7.490146596 7.633776783 7.328562041 7.502721539 7.596426724 7.542327923 7.413341841 148255472 nhh Organic Remediation Aromatics Nitoaromatics Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.519950416 8.41764571 7.999206194 8.30586571 8.479623186 8.285929858 8.360100328 8.18373755 8.378892948 123199849 obgE Stress Radiation stress Prochlorococcus marinus str. MIT 9515 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 7.518766219 7.734144459 6.895191681 7.087374971 7.743649313 7.515965546 7.479665614 7.526787041 241362141 fnr Stress Oxygen stress Acidovorax delafieldii 2AN 7.751797143 7.84590198 7.871468362 7.431626105 7.894642468 7.893307693 8.015050478 7.966477252 7.883933041 197243797 MFS_antibiotic Antibiotic resistance transporter Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 8.492461881 8.295086877 8.124120864 8.179258027 8.221320001 8.41384594 7.796475279 8.10367022 7.732933054 27363918 AceB Carbon cycling Carbon degradation others Vibrio vulnificus CMCP6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 7.299111363 6.921409264 7.483950914 84796642 cumA Organic Remediation Aromatics Other aromatics Sphingomonas sp. 1XXyl1b 7.313207687 7.297891929 7.385553434 7.004809891 7.380335299 7.822591067 7.314925761 7.497221078 7.330243983 145306121 clpC Stress Protein stress Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 7.422803276 7.391565989 6.85885607 7.652442716 144900114 cydB Stress Oxygen limitation Magnetospirillum gryphiswaldense MSR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 7.681099711 7.416492757 7.189911055 6.956045048 7.277967906 7.408635025 7.362645645 7.356178641 7.516034399 157960332 cytochrome Energy process Energy process Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 7.427979319 7.132929143 162453844 nmoA Organic Remediation Aromatics Nitoaromatics Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 7.622301247 7.671855452 7.686262524 7.285586588 7.790477104 7.995777752 7.55108216 7.662502154 7.86081318 161019212 bphC Organic Remediation Aromatics Polycyclic aromatics Dyella ginsengisoli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Dyella; 7.93139231 8.648236419 8.469593444 8.279767138 8.408109854 8.230925069 8.291791719 9.047425569 8.429830567 68058211 sigma_24 Stress Sigma factors Haemophilus influenzae 86-028NP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus influenzae; 7.007131214 6.755810516 62149138 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 6.997386365 7.215625117 7.006507276 6.81898643 7.362380758 7.002910487 6.846422457 78224701 cytochrome Energy process Energy process Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 7.666770454 7.561615118 7.615270058 7.092976331 7.120520697 7.679665619 56961829 alkH Organic Remediation Other Hydrocarbons Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 7.181643986 7.422745651 7.055166058 6.881173509 7.272875482 14161290 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 7.349426048 7.157520651 7.125905529 7.230796147 261419774 AceB Carbon cycling Carbon degradation others Geobacillus sp. Y412MC61 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.095609876 7.019425538 7.100891478 6.854940529 7.616717392 7.467839907 7.048870683 7.308738943 114538304 phoB Stress Phosphate limitation Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 7.304754597 7.373885094 7.0145663 7.217693198 7.073210477 7.606251147 110647669 pnbA Organic Remediation Aromatics Nitoaromatics Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 7.799205636 7.745558105 7.625637521 8.102744545 8.310636551 8.306173962 8.247302352 7.894125676 8.180826668 24346422 pilin virulence pilin Shewanella oneidensis MR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella oneidensis; 7.384942075 7.509589546 7.574550153 7.419016075 7.606552295 7.898414209 7.610033946 7.605064887 7.513401586 254448809 AceB Carbon cycling Carbon degradation others gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.19114359 6.817062422 7.792764818 7.328636388 7.143190553 7.588704929 187920975 ChrA Metal Resistance Chromium Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8.180573015 8.18549607 8.024000997 8.48374756 8.316791293 8.29178147 8.329257479 8.368190227 7.777160767 2114390 hly virulence hemolysin Vibrio mimicus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.004335591 7.152814638 220708972 gyrB other category gyrB Geobacillus sp. Y412MC61 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.366801608 7.289232294 7.16871429 7.283659905 7.215382007 7.691571714 7.362857347 7.01463819 7.440009235 110821893 pcc Carbon cycling Carbon fixation Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7.132929004 7.448301778 7.520111416 7.232634782 6.70700781 7.704827684 7.277439406 7.236665523 7.440195477 72162579 obgE Stress Radiation stress Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 7.788385349 7.525546322 7.435596951 7.614686109 7.595323988 7.877144272 7.669940255 7.51020052 7.514104 219858022 pstB Stress Phosphate limitation Arthrobacter chlorophenolicus A6 7.417118636 7.530976072 7.015111558 7.592828092 7.592204095 7.4929125 7.69421115 77698209 sox Sulphur Sulphur oxidation Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.709024771 7.831602453 7.750965437 7.582014715 8.059343077 8.095819785 8.118068421 8.173255849 8.078135573 93352995 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 7.307946277 7.603867763 6.839676024 7.413586254 7.520398129 7.291235898 17384295 DNA_polymerase_type_I Bacteria phage REPLICATION Enterobacteria phage T3 order:Caudovirales;family:Podoviridae;genus:T7-like viruses; 6.920951602 7.351748524 73749330 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. CBDB1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 8.244908705 8.310216905 8.082256648 7.85135297 8.264832075 7.989432864 8.151290915 8.145255785 8.170201648 163757655 SMR_antibiotics Antibiotic resistance transporter Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 7.121984673 7.454996326 254503184 grpE Stress Heat shock Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 7.631781883 7.382105038 7.444986059 6.983811473 7.397889448 7.617406642 7.565621624 7.693521714 7.578467619 153889341 nrfA Nitrogen Dissimilatory N reduction Opitutaceae bacterium TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 7.765319586 7.514912457 7.173221309 7.024275937 7.690244486 7.669453742 7.608042645 7.475291247 7.887834857 198261957 AceA Carbon cycling Carbon degradation others gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.3074054 7.238422144 7.310492603 6.389598702 7.619885807 6.942217502 7.108471234 7.307164209 134098380 sigma_70 Stress Sigma factors Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 8.979677662 9.399449998 9.500837426 67901172 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.228130347 7.171527343 6.917172555 6.711938211 7.326942085 255341010 AceB Carbon cycling Carbon degradation others Flavobacteriaceae bacterium 3519-10 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae; 7.157245052 7.098679839 6.767765939 7.625236139 104304171 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7.434606949 7.415087639 7.137542801 6.986026875 7.005542973 7.451774139 7.260670813 7.388407334 199591266 ppx Phosphorus Phosphorus utilization Lactobacillus rhamnosus HN001 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 7.191785651 7.043406971 7.328208187 7.182247732 7.437949565 7.030107248 6.916940369 6.962831138 169637532 sigma_38 Stress Sigma factors Candidatus Desulforudis audaxviator MP104C superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Candidatus Desulforudis;species:Candidatus Desulforudis audaxviator; 7.661653553 7.434450104 7.341740858 7.199603656 7.1683937 7.419647984 7.376825318 7.214258706 7.402507819 206677783 gyrB other category gyrB Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.412479044 7.59615172 7.629678125 7.689782675 7.965939671 7.875158932 7.68532369 7.565652932 84998674 CadA Metal Resistance Cadmium Theileria annulata superkingdom:Eukaryota;phylum:Apicomplexa;class:Aconoidasida;family:Theileriidae;genus:Theileria;species:Theileria annulata; 7.801730709 7.107420064 7.448123145 7.226815595 7.483804847 144897748 fnr Stress Oxygen stress Magnetospirillum gryphiswaldense MSR-1 7.942250542 8.037518527 7.987470167 7.663363822 8.304010449 7.836391201 8.126031595 8.369586575 7.774937952 153006360 hydrogenase Energy process Energy process Anaeromyxobacter sp. Fw109-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 8.264349481 8.258338307 7.96607327 8.019953406 8.187788105 8.453934463 8.1850706 7.732319118 8.007294454 62275636 nagI Organic Remediation Aromatics Aromatic carboxylic acid Halorubrum sp. E4 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum; 8.251334107 8.008205689 7.897926317 7.986392148 8.591612172 8.305254 8.097114252 7.831384674 8.224459923 227999928 hly virulence hemolysin Brachyspira murdochii DSM 12563 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Brachyspiraceae;genus:Brachyspira;species:Brachyspira murdochii; 6.930814597 6.933081944 2353024 gyrB other category gyrB Shewanella benthica superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 7.891661411 7.391281146 7.583109019 7.10768817 7.317591241 71737590 TerD Metal Resistance Tellurium Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 7.756836876 7.855095467 7.853646304 7.870238191 7.743717554 8.045300546 109452407 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.237666905 7.081400844 117998696 pcc Carbon cycling Carbon fixation Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.236545883 8.840450793 8.737497279 8.315111151 9.226634893 8.290047393 8.807445569 8.63947379 9.030131959 163861460 gdh Nitrogen Ammonification Bacillus weihenstephanensis KBAB4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus weihenstephanensis; 7.487578363 7.367617743 7.481207996 7.426812295 7.211367811 7.518491946 89095462 pilin virulence pilin Oceanospirillum sp. MED92 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Neptuniibacter; 7.431910869 7.472922875 7.398773332 7.257123026 7.242338461 257147653 ABC_antibiotic_transporter Antibiotic resistance transporter Lactobacillus rhamnosus GG superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 7.57216344 7.693913034 7.909637683 7.538379525 8.155321997 7.927850251 7.878729914 8.091298463 7.949511938 62178963 silC Metal Resistance Silver Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 8.097430732 8.210301659 8.217195461 7.927878644 8.21410318 8.181467542 8.169983804 8.50090353 8.380612579 32307973 narG Nitrogen Denitrification uncultured bacterium 6.945864592 6.917703707 147920132 CopA Metal Resistance Copper uncultured methanogenic archaeon RC-I superkingdom:Archaea;phylum:Euryarchaeota; 7.839524379 8.105545439 8.519008404 8.290935459 8.434041189 8.430077448 8.397528346 8.855583658 8.247637579 157933073 B_lactamase_C Antibiotic resistance Beta-lactamases Aeromonas enteropelogenes superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas; 7.504498908 7.534372437 8.028485884 7.843685617 7.808715577 8.225417275 7.742740858 7.759184798 7.825622613 75910736 NiR Nitrogen Assimilatory N reduction Anabaena variabilis ATCC 29413 7.324518953 7.139877634 7.024418386 6.936966312 6.788838672 6.75516232 153004576 cytochrome Energy process Energy process Anaeromyxobacter sp. Fw109-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 7.826068933 7.770827816 7.862193247 7.588285178 8.167292414 8.22536725 8.081754062 7.659652491 7.856898161 149924172 qorL Organic Remediation Aromatics Polycyclic aromatics Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 7.730711412 7.537077866 7.795407873 7.601747603 8.536883992 8.062465085 7.948283769 7.989420957 256714631 phoB Stress Phosphate limitation Lactobacillus coleohominis 101-4-CHN superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus coleohominis; 6.968172558 7.002884298 24373658 hydrogenase Energy process Energy process Shewanella oneidensis MR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella oneidensis; 7.590214566 7.677884945 6.921490963 7.689174042 7.184932913 7.597399343 212995589 SMR_antibiotics Antibiotic resistance transporter Wolbachia endosymbiont of Culex quinquefasciatus JHB superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales;family:Rickettsiaceae;genus:Wolbachia;species:Wolbachia endosymbiont of Culex quinquefasciatus; 7.213171048 7.106127486 223470320 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 6.866947984 6.837390783 7.412414167 224821123 grpE Stress Heat shock Natrialba magadii ATCC 43099 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natrialba;species:Natrialba magadii; 8.352601816 8.242036432 8.04375679 7.783001812 7.807492461 7.920937801 7.876635426 7.741740073 95102016 dehH Organic Remediation Chlorinated solvents Burkholderia sp. FA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.020603907 6.934605078 6.987103527 6.737714385 170605730 nirS Nitrogen Denitrification uncultured bacterium 7.041368258 6.999042289 7.450132902 7.444103454 7.254640717 7.485596603 262307644 glnA Stress Nitrogen limitation Acinetobacter lwoffii SH145 7.273098006 7.515707016 7.275234041 280957925 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio aespoeensis; 8.672818977 8.584400762 8.69353022 8.675409721 8.794774052 8.713657432 9.027762511 148655201 glnA Stress Nitrogen limitation Roseiflexus sp. RS-1 7.892915827 8.013086284 8.46267375 8.189659381 8.670359034 7.814280387 7.947158976 7.973156703 66572041 xylC Organic Remediation Aromatics BTEX and related aromatics Xanthomonas campestris pv. campestris str. 8004 8.027763299 7.512934654 7.538503382 7.626055719 7.919551526 7.97159103 7.774578899 7.479653053 7.777347848 170719772 iro virulence Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.237261951 7.253223879 7.357628412 7.119695827 189025967 obgE Stress Radiation stress Treponema pallidum subsp. pallidum SS14 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema pallidum; 7.628364531 7.470454763 7.323177848 7.257021782 7.290706921 7.389686174 7.254144458 7.407708929 7.256231803 116743254 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.706160802 7.845105914 7.698956685 7.232719594 7.354184567 8.010057569 7.399252768 7.200637671 7.7402583 152990585 aclB Carbon cycling Carbon fixation Nitratiruptor sp. SB155-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;genus:Nitratiruptor; 6.667972014 6.896434235 261880316 ara Carbon cycling Carbon degradation Hemicellulose Prevotella bergensis DSM 17361 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bergensis; 7.421951012 7.257503243 7.24472344 6.869435416 7.056999031 7.480070794 7.131417145 7.233200145 7.015396774 226322436 pstB Stress Phosphate limitation Coprococcus comes ATCC 27758 7.29848127 7.218734731 78167318 dsrA Sulphur sulfite reductase Pelodictyon luteolum DSM 273 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon luteolum; 7.544044894 7.509112596 7.853574529 7.10617063 7.587077484 7.466143995 7.841879727 7.738302074 83017299 gyrB other category gyrB Microbulbifer salipaludis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Microbulbifer; 7.360353823 7.361383354 7.230464902 6.918949107 7.287660139 7.608826418 7.256543139 7.261827191 7.066093629 172056898 pstC Stress Phosphate limitation Exiguobacterium sibiricum 255-15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 7.565409667 7.393226024 7.524250745 6.823569908 6.761902124 7.658418048 7.432693848 7.374024452 7.384955804 91785731 alkK Organic Remediation Others Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.680663019 7.646132295 7.209623384 7.837805324 7.35737768 7.025744734 7.554342442 60476241 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.850666158 8.163256668 8.474250834 7.413716521 7.701939279 7.922144411 8.073089364 169779067 amyA Carbon cycling Carbon degradation Starch Aspergillus oryzae RIB40 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus oryzae; 7.514549011 7.509866119 7.241593487 7.821932816 7.489249462 7.553911799 7.577828812 30250134 chnB Organic Remediation Other Hydrocarbons Nitrosomonas europaea ATCC 19718 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas europaea; 7.943803872 8.14171361 8.005782981 7.742611095 8.204423277 7.882964724 7.981484455 8.212401486 7.642092991 226319070 SMR_antibiotics Antibiotic resistance transporter Deinococcus deserti VCD115 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 7.780273594 8.231935676 8.167263375 8.159618356 7.808340816 8.302718011 7.637721975 7.60300738 7.452014416 83752398 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.73386412 7.155338117 7.554014793 7.514909175 7.156781713 7.723431155 7.326875068 7.433886363 7.638907085 52214526 ara Carbon cycling Carbon degradation Hemicellulose Bacteroides fragilis YCH46 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 7.348714503 7.238314381 7.50561721 6.938851582 7.194799678 7.372582774 7.305353049 7.468379176 17428842 nagI Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 7.635524402 7.504196558 7.758846129 7.823242432 7.362185839 7.932126333 7.583886969 7.4810965 7.89174999 109452558 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.398881049 7.172539571 7.31346865 89513034 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.485387684 7.632973344 7.633647599 7.348273537 7.73093778 7.888142369 7.692033988 7.603615847 7.830844001 163811770 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.682352188 7.613319941 7.319706 7.182284853 7.554012202 188020246 MFS_antibiotic Antibiotic resistance transporter Providencia stuartii ATCC 25827 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia stuartii; 7.148442516 7.191355587 7.170684357 6.893136014 6.859480269 7.379439229 13422766 ZntA Metal Resistance Zinc Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 7.519257589 7.492311221 7.080760862 6.866248358 7.661233352 92440213 pcc Carbon cycling Carbon fixation Mycobacterium sp. KMS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.953730506 8.108052188 7.680532482 7.575139557 8.094049366 8.173984267 7.924502283 7.897696059 7.834110403 83017109 bphA Organic Remediation Aromatics Polycyclic aromatics Paenibacillus sp. YK5 7.312043821 7.141014104 7.219864133 7.138407124 6.891099724 7.637772042 6.972231579 7.491844428 127511727 ahpF Stress Oxygen stress Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 7.073518496 7.131960505 6.712454378 7.364354082 41395143 mhpB Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 7.454683252 7.277286269 7.511449956 7.037617101 6.882796127 7.732493234 240296724 obgE Stress Radiation stress Actinobacillus minor NM305 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus minor; 6.90270863 7.27171124 6.816857378 6.501149476 7.317633518 6.880225682 7.041140164 7.203839339 49062 nhh Organic Remediation Aromatics Nitoaromatics Rhodococcus rhodochrous superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7.882636324 7.720653828 7.906530873 7.707176354 8.222926077 8.270499132 8.411646886 7.856691783 78197609 todF Organic Remediation Others Synechococcus sp. CC9605 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.259840606 7.206481787 7.419557377 7.531017475 7.145294141 7.301988907 7.282317086 7.316198252 110833405 narJ Stress Oxygen limitation Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 7.673608884 7.783985306 7.68571011 7.373763594 7.476847763 7.681915893 7.473102151 7.641538208 16263847 amyA Carbon cycling Carbon degradation Starch Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 7.784422328 7.47560023 7.637695212 7.35163539 7.259767616 7.817260191 7.651125114 7.706189942 7.781258553 254409376 glnA Stress Nitrogen limitation Microcoleus chthonoplastes PCC 7420 7.477779769 7.583056938 3242653 endoglucanase Carbon cycling Carbon degradation Cellulose Aspergillus aculeatus superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 7.774290819 7.715292447 7.425985619 7.507281514 7.852789937 7.604368717 7.200562954 7.401223438 227452928 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium aurimucosum; 7.505751846 7.225662512 7.020055408 7.310004721 7.819375655 7.426627899 7.421755452 7.459661372 3088571 groEL Stress Heat shock Paracoccidioides brasiliensis superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides; 8.041240884 8.011375816 8.059922658 7.53998845 8.084800257 8.198643269 8.290707444 8.008043306 8.150698432 18495817 chnC Organic Remediation Other Hydrocarbons Xanthobacter flavus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter; 7.109548812 7.202379838 7.446957008 7.157940485 7.617549581 253999566 pstC Stress Phosphate limitation Methylovorus sp. SIP3-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylovorus; 7.758650581 8.12481799 8.069011891 7.684642489 8.107085116 8.00400291 8.076132648 8.263391719 8.204377053 255334881 sigma_24 Stress Sigma factors Hyphomicrobium denitrificans ATCC 51888 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 8.736180482 9.074412661 8.755599515 120600339 cytochrome Energy process Energy process Shewanella sp. W3-18-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 8.310392256 8.667816218 8.210052683 8.177070256 8.823457954 8.156364573 8.432263048 8.259566808 8.619932187 62131468 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 7.501290964 7.221467662 7.048202903 7.019587184 7.016957087 7.654613123 7.120222884 7.13173011 239982849 B_lactamase_A Antibiotic resistance Beta-lactamases Streptomyces albus J1074 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces albus; 7.666165638 7.656459175 7.60450369 7.314933988 7.912374513 7.781028466 7.740520681 7.709429413 7.960163739 25900674 FTHFS Carbon cycling Acetogenesis uncultured bacterium superkingdom:Bacteria; 8.202343022 7.998713854 7.417473157 7.720978435 7.54860661 8.251190464 7.753584151 7.452792281 7.461844554 49530733 nmoA Organic Remediation Aromatics Nitoaromatics Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 6.97720173 6.880071791 255276280 katE Stress Oxygen stress Geobacillus sp. Y4.1MC1 7.610785899 7.380483584 7.542117466 7.431540505 7.974409532 7.178673051 7.250052681 7.588340102 83650948 iro virulence Burkholderia thailandensis E264 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 7.751534589 7.965195631 7.730265558 8.154183607 7.759066308 7.786313967 7.40089127 39933736 bco Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.896110319 7.819400242 7.542330081 7.41067314 7.774666978 7.711111606 7.531097453 7.623193113 7.671967049 28869906 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 7.312242686 7.539664473 7.399577914 6.851154509 7.356345466 7.558631163 6.880678686 7.007453435 7.328451755 154317537 nagG Organic Remediation Aromatics Aromatic carboxylic acid Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 6.930005854 7.401820537 7.397854419 7.522164513 126577817 Catechol Organic Remediation Aromatics Other aromatics Algoriphagus sp. PR1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cyclobacteriaceae;genus:Algoriphagus; 7.255601623 8.093924358 7.906646263 7.411235488 8.32180645 7.757485959 7.903208553 7.8157917 7.906880464 221067089 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.052312486 8.034158394 7.7868821 8.208643534 8.250331522 8.067123205 8.00463424 29649150 gyrB other category gyrB Mesoplasma syrphidae superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Entomoplasmatales;family:Entomoplasmataceae;genus:Mesoplasma; 8.149249832 7.900005296 7.830380629 7.446094761 7.858465146 8.069538617 7.948546695 7.898646564 8.261722981 154304527 glnA Stress Nitrogen limitation Botryotinia fuckeliana B05.10 7.853734514 7.667429668 7.521193161 7.230984042 7.637690123 133948820 Catechol Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 7.992832297 8.023346719 8.323921416 8.671956474 8.259104429 8.436361187 8.171833358 8.305108213 8.394148282 88818066 glucoamylase Carbon cycling Carbon degradation Starch Pseudoalteromonas tunicata D2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas tunicata; 7.536644929 7.923652434 8.297056528 8.169506859 8.022978925 8.075302641 8.11837743 8.202435604 46450302 pstC Stress Phosphate limitation Desulfovibrio vulgaris str. Hildenborough superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 7.284479752 7.423128638 7.257455108 7.532145085 7.261185153 7.663576884 7.768335207 7.558954461 7.47448116 254979291 fnr Stress Oxygen stress Nitrosomonas sp. AL212 7.171306666 7.2476356 7.302461748 7.050438188 7.316839694 7.881939268 7.566534533 7.462671972 7.823874806 33620623 T4_recomb_endonuclease Bacteria phage REPLICATION Enterobacteria phage RB49 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.127276655 7.018095986 7.189711136 118424497 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.631546798 8.017578808 8.387752447 7.87690569 8.250806795 7.898517152 7.559453272 7.767990796 5105142 mer Metal Resistance Mercury Aeropyrum pernix K1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Aeropyrum;species:Aeropyrum pernix; 7.158128609 6.940439793 7.074725595 6.842400722 6.885456159 7.298955967 7.108653279 118730278 CadA Metal Resistance Cadmium Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.504050322 7.564476325 7.971838578 7.700319761 8.048907868 7.880266605 7.944220078 7.872728239 7.500334329 197334514 nrfA Nitrogen Dissimilatory N reduction Vibrio fischeri MJ11 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Vibrio fischeri; 7.645524588 7.52640055 7.650156159 241778358 phoB Stress Phosphate limitation Allochromatium vinosum DSM 180 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 7.477099334 7.652466295 7.554996772 7.805909714 7.937801157 7.751409294 34482565 CopA Metal Resistance Copper Wolinella succinogenes 7.424713418 7.7110661 7.576852731 7.441789326 7.644036614 7.821984398 7.66552105 7.677236982 70607839 ABC_transporter_IV Bioleaching other category Sulfolobus acidocaldarius DSM 639 7.724028527 7.18068345 7.055415045 222153110 pstB Stress Phosphate limitation Streptococcus uberis 0140J 6.927553321 6.9932681 86372243 T4_type_portal_protein Bacteria phage REPLICATION Stenotrophomonas phage SMB14 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.241191608 7.097434099 7.419522539 7.075108699 6.720301472 7.623466638 7.177054308 7.12876408 7.444241575 258520125 nirK Nitrogen Denitrification Cardiobacterium hominis ATCC 15826 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Cardiobacteriales;family:Cardiobacteriaceae;genus:Cardiobacterium;species:Cardiobacterium hominis; 7.596313908 7.377892536 7.719224627 7.467562306 7.489265242 7.857923153 7.637021229 7.660701105 7.883750092 78498036 nosZ Nitrogen Denitrification Thiomicrospira denitrificans ATCC 33889 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Sulfurimonas;species:Sulfurimonas denitrificans; 7.126727726 7.036004005 7.047241322 118466189 tfdA Organic Remediation Aromatics Chlorinated aromatics Mycobacterium avium 104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 7.695655898 7.532889919 7.734418764 7.638185266 8.031609132 7.542353199 7.488463194 254462321 hrcA Stress Heat shock Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.442006747 7.314924835 7.236185201 6.899516964 7.082475283 7.666228213 139478547 mer Metal Resistance Mercury uncultured soil bacterium superkingdom:Bacteria; 7.80919569 8.130077542 8.10153077 7.630532519 8.263468747 7.958126887 8.193267738 8.215583708 7.79943684 268549428 amoA Nitrogen Nitrification superkingdom:Archaea; 7.561797833 7.287244572 7.280772303 6.964195041 7.214245466 7.277986506 6.982798659 6.740468774 3646488 hrcA Stress Heat shock Bacillus sphaericus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Lysinibacillus; 7.342181993 7.240372407 7.088957541 6.93700276 7.510669117 7.41900408 6.921450338 7.373582943 71557287 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 7.021976251 7.155962758 6.681306092 7.140083882 158138735 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.198612001 7.350444091 7.399224526 7.110581944 7.709635503 6.887705026 7.152676441 7.324725692 114331813 pilin virulence pilin Nitrosomonas eutropha C91 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas eutropha; 7.823564745 7.757519013 7.498960306 7.32345603 7.14084345 7.569182179 7.622802176 46307980 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.471519009 7.243682649 7.391146747 7.542364278 7.762554085 7.270271842 7.36177458 11344603 narJ Stress Oxygen limitation Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.614333955 7.111235495 7.318740727 7.479190824 7.325117586 7.658444808 7.239835858 7.322637427 7.483968632 238701762 phoB Stress Phosphate limitation Yersinia aldovae ATCC 35236 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia aldovae; 7.413515388 7.121261244 7.311338088 189421969 narJ Stress Oxygen limitation Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 8.106826769 7.906603842 7.522924153 7.524176315 7.758492599 7.755693088 7.430732473 7.484452295 148260088 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 8.345369926 8.401532415 8.342266683 8.240806712 8.882843577 8.570270101 8.49139693 8.40573626 8.459482524 50084965 alkK Organic Remediation Others Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 7.142499571 7.268916057 6.936060768 7.210615614 260574943 BchY other category chlorophyllide reductase Rhodobacter sp. SW2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 7.909813465 7.82331914 7.565391294 7.881461384 8.437559582 8.25843959 8.334397251 7.97434332 8.169659723 157404344 Ni_Fe_hydrogenase Energy process Energy process Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.098221806 7.415614271 7.474674998 7.112663744 222054424 sigma_24 Stress Sigma factors Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 7.776801723 7.74367541 7.416846712 7.524619887 7.556165333 7.752750915 7.429326102 7.300864717 7.521500442 2822269 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.438994138 7.431937279 7.001088916 7.133063291 169793362 narG Nitrogen Denitrification uncultured bacterium 7.670022669 7.151971213 7.446636755 7.399529679 163262181 katE Stress Oxygen stress Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 7.812566178 7.696990877 7.67747463 7.702643134 7.830854477 8.23491498 8.090530236 8.126994505 7.963680772 37522898 todF Organic Remediation Others Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 7.814729601 7.965956013 7.72380505 7.956005407 7.971207172 7.727887878 7.478006237 7.849401008 13625840 gdh Nitrogen Ammonification Clostridium lituseburense superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 7.369852833 7.212085629 7.15209112 7.116062048 6.911534674 7.250556921 13517057 gyrB other category gyrB Cytophaga sp. MBIC01482 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Cytophaga; 7.101277901 7.030460148 149181332 ahpC Stress Oxygen stress Bacillus sp. SG-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 6.982396008 7.439492482 157285620 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.271801618 7.013798355 254470163 pcc Carbon cycling Carbon fixation Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 7.945510602 8.162335539 8.039400613 8.20517666 8.51565881 8.53109396 8.746404635 8.405935254 8.447922395 186683744 cap virulence capsule Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 7.3054234 7.380662 7.260769287 6.627687733 7.401867482 7.010196125 7.050550481 7.28676944 157918202 hrcA Stress Heat shock Salinispora arenicola CNS-205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 7.370921487 7.287307999 7.747313537 7.978954293 7.28265388 7.421537568 7.55711948 7.787772638 156972625 sigma_32 Stress Sigma factors Vibrio harveyi ATCC BAA-1116 7.71359596 7.238059136 7.316882091 7.474572533 7.461247369 7.757566494 7.714242763 7.397833971 7.408222578 50302365 ahpC Stress Oxygen stress Kluyveromyces lactis superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Kluyveromyces;species:Kluyveromyces lactis; 7.085842215 7.110484388 6.863256415 6.921476905 157679052 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.07163626 7.386439894 7.128426312 6.636705306 7.508247244 217414289 pcc Carbon cycling Carbon fixation Bifidobacterium angulatum DSM 20098 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium angulatum; 7.819141673 7.794923142 7.668352133 7.70098588 8.082038932 7.889098929 7.937575731 7.653305932 7.889516369 251840221 obgE Stress Radiation stress Bacteroides sp. 1_1_6 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 7.060445242 7.217814497 7.150750716 7.453388679 7.456837102 7.510821654 7.632665536 115353410 ureC Nitrogen Ammonification Helicobacter felis superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter; 6.941422444 7.350201878 7.371373164 7.651084645 6.992660167 7.343133405 7.497609777 7.23857373 262258567 obgE Stress Radiation stress Acinetobacter calcoaceticus RUH2202 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter calcoaceticus; 7.094754163 7.318858833 7.254993918 120605950 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 7.274164535 7.337349905 6.850977539 7.649337625 163847764 TerC Metal Resistance Tellurium Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 6.966242327 7.116096704 153011044 HBH Organic Remediation Aromatics BTEX and related aromatics Ochrobactrum anthropi ATCC 49188 7.288035456 7.194942489 7.141888508 6.95382248 6.98444813 7.546913741 145573271 type_III_secretion virulence secretion Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 7.49689229 7.421775907 7.23577878 7.39422066 7.748875567 7.339924279 7.545683838 211731781 endolysin_transglycosylase Bacteria phage LYSIS Bacteriophage APSE-7 7.26395492 7.299302891 7.072863082 110612649 gyrB other category gyrB uncultured bacterium superkingdom:Bacteria; 7.849502159 7.74402639 7.544082256 7.598403488 7.79144784 7.757037544 7.904691271 7.540539985 7.608786092 82946851 ZntA Metal Resistance Zinc Magnetospirillum magneticum AMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 7.93283322 7.85183346 8.265323555 8.444146897 7.794184752 8.061100344 7.853391735 7.989473623 7.840422209 169886136 fnr Stress Oxygen stress Synechococcus sp. PCC 7002 7.163132927 7.239918092 7.320097554 7.214692197 7.263211534 7.468533754 7.321571379 7.248560585 148837929 sigma_32 Stress Sigma factors Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 6.967113709 7.122155261 6.708516311 7.461773407 7.098308468 6.816693122 111150000 mhpA Organic Remediation Aromatics Aromatic carboxylic acid Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 8.650868136 8.401347145 8.418266489 8.716307478 8.569636557 8.447850788 8.120718976 8.429914643 12667682 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium UMTRAdsr610-12 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 7.070970408 7.417986293 7.007155147 7.010469433 7.620852559 7.091034413 7.38470921 223041383 ArsC Metal Resistance Arsenic Actinobacillus minor 202 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus minor; 6.947842828 6.923179621 90577502 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Vibrio angustum S14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium angustum; 6.769810851 6.964823096 6.868560038 6.879914646 7.353137842 283440937 sigma_24 Stress Sigma factors Pirellula staleyi DSM 6068 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Pirellula;species:Pirellula staleyi; 7.562450817 7.571615639 116048328 nifH Nitrogen Nitrogen fixation uncultured soil bacterium superkingdom:Bacteria; 7.474887352 7.124779797 7.096799666 6.792061426 6.924673099 7.48250608 7.077507851 7.056350115 7.393660346 73666185 gyrB other category gyrB Salmonella bongori superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella; 7.265899546 7.428203711 7.068497196 6.899126732 7.14677463 170114115 ChrA Metal Resistance Chromium Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 7.836898006 7.663207656 7.71861694 7.482294314 7.676765747 7.873583679 7.852266488 7.565488849 7.327060324 71040596 iuc virulence aerobactin Grimontia hollisae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae; 7.203640233 7.05462701 6.997389036 6.875688675 6.670952042 7.540931472 6.991930848 6.858206687 7.170013751 9971373 gyrB other category gyrB Polaribacter glomeratus superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Polaribacter; 7.156224297 7.063471244 7.106993904 224372659 sigma_70 Stress Sigma factors Nautilia profundicola AmH superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Nautiliales;family:Nautiliaceae;genus:Nautilia;species:Nautilia profundicola; 7.207785862 7.040060052 7.203106675 6.911737475 6.892341704 84778297 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.023554965 7.069272729 7.131907639 7.143788261 7.276778648 161389685 rd Organic Remediation Chlorinated solvents Phaeobacter gallaeciensis BS107 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 8.058581265 8.043052334 8.008415908 7.558682131 8.027760308 7.752193174 7.693671976 7.893527986 7.939555513 182632268 iro virulence Xylella fastidiosa M23 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xylella;species:Xylella fastidiosa; 8.246526775 8.111414786 7.608718911 7.762050007 8.213475919 7.963981097 8.059663819 8.137953523 8.181317802 67156784 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 7.677962461 7.626832508 7.750278468 8.185432019 221731155 pilin virulence pilin Diaphorobacter sp. TPSY superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax ebreus; 7.795317082 7.777351665 7.079857427 7.50180316 7.388978907 7.876580401 7.431648532 7.238104989 39935371 alkK Organic Remediation Others Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.287109394 7.356628085 7.108714899 6.986545672 8.14801797 7.223592116 6.807609037 170123725 ppx Phosphorus Phosphorus utilization Escherichia albertii TW07627 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 7.493288194 7.229812534 7.350912123 7.173154248 7.900934225 7.045952621 7.153828659 73537921 silC Metal Resistance Silver Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.96428649 7.999368275 7.640456263 7.763114039 8.064961522 8.153236915 8.199026275 7.962055776 8.224543371 89068406 pimF Organic Remediation Aromatics Aromatic carboxylic acid Oceanicola granulosus HTCC2516 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 7.884468687 8.178915817 7.844407225 7.630440479 8.0516747 7.918497309 8.115634799 7.765562026 196210053 catB Organic Remediation Aromatics BTEX and related aromatics Geobacillus sp. G11MC16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.012202034 7.1928802 115422666 nagG Organic Remediation Aromatics Aromatic carboxylic acid Bordetella avium 197N 7.554453215 7.728090505 7.924425374 7.144704466 7.530636028 7.66490837 7.490340896 8.014987474 262380152 iro virulence Acinetobacter radioresistens SH164 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter radioresistens; 7.32151413 7.21521896 7.159734953 7.234487775 7.07376668 7.555672343 256580355 obgE Stress Radiation stress Desulfomicrobium baculatum DSM 4028 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfomicrobiaceae;genus:Desulfomicrobium;species:Desulfomicrobium baculatum; 7.741064555 7.467837334 24983439 ArsC Metal Resistance Arsenic Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.678188696 7.535405015 7.375645025 7.319186131 7.691851729 7.745255176 7.409064533 7.491495555 111022086 Catechol Organic Remediation Aromatics Other aromatics Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7.148742859 7.556889561 262186410 katE Stress Oxygen stress Aeromicrobium marinum DSM 15272 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Aeromicrobium;species:Aeromicrobium marinum; 8.277356893 8.237209569 8.508218075 8.093114109 8.398798729 8.189622288 8.271736492 8.506769352 8.262857589 109452519 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.574026644 7.224938608 7.381183139 7.403003213 7.125977599 8.031276824 7.293162298 7.253704324 7.368144577 157692400 SMR_antibiotics Antibiotic resistance transporter Bacillus pumilus SAFR-032 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pumilus; 8.074838142 7.724540447 7.792948935 7.707820988 7.886914177 150958059 silC Metal Resistance Silver Klebsiella pneumoniae subsp. pneumoniae MGH 78578 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 7.850428179 7.557826346 7.610244446 8.063727389 8.117725306 7.683702938 7.734906065 7.697391419 221134172 B_lactamase_C Antibiotic resistance Beta-lactamases Glaciecola sp. HTCC2999 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola; 7.864757462 7.667071799 7.829852619 7.784152813 7.56543273 7.594159288 7.682164063 7.531644316 121715055 endoglucanase Carbon cycling Carbon degradation Cellulose Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7.774647104 7.687335974 7.428120227 7.426860201 7.600682576 8.034978579 7.511988666 7.38790601 254776071 limEH Carbon cycling Carbon degradation Others Mycobacterium avium subsp. avium ATCC 25291 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 7.483180302 7.288767203 8.086443611 7.754802195 7.612068642 8.004134289 241214763 sigma_24 Stress Sigma factors Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 9.108888686 9.54448996 9.327876879 259649231 pstB Stress Phosphate limitation Lactobacillus rhamnosus GG 7.545547304 7.369129725 7.219312258 7.535652193 7.632027093 7.614960315 7.43004282 258450273 ureC Nitrogen Ammonification Staphylococcus aureus A6224 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus aureus; 7.132951554 7.140766611 154275456 AceA Carbon cycling Carbon degradation others Ajellomyces capsulatus NAm1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 7.686879733 7.544551592 7.881783869 7.648373383 7.404288673 8.007244144 7.533155378 7.846207305 8.001186629 784897 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Streptococcus pneumoniae superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 6.995816042 7.467466454 240102395 glnA Stress Nitrogen limitation Thermococcus gammatolerans EJ3 7.921342501 7.421916971 7.856659805 190995261 TehB Metal Resistance Tellurium Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 7.770021183 7.775209185 7.644905836 7.667562999 8.059011997 7.478691692 7.891759659 51534821 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.424445659 7.299202277 7.773308887 7.673992596 7.434298763 7.948099698 7.260037364 7.451106886 256686305 hrcA Stress Heat shock Jonesia denitrificans DSM 20603 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 7.542291127 7.488927745 7.501776022 7.441429259 7.724641621 119357669 grpE Stress Heat shock Chlorobium phaeobacteroides DSM 266 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 7.806863151 7.703268699 7.869371403 7.266529219 8.147881744 7.640676376 7.958157399 8.025048441 8.041814052 145701288 universal_stress_Family_protein_III Bioleaching other category Metallosphaera sedula DSM 5348 7.634869257 7.713894542 7.501769593 7.237484686 7.215942371 7.815337689 7.212356873 7.262771615 116696037 TerC Metal Resistance Tellurium Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 7.437528021 7.323979878 7.154758746 7.336604531 7.26901316 7.551336679 7.402243747 7.204275444 7.413078685 110596807 CopA Metal Resistance Copper Chlorobium ferrooxidans DSM 13031 6.910331752 7.158471701 7.311050551 53755248 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Legionella pneumophila str. Lens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella;species:Legionella pneumophila; 7.485546348 7.333841816 7.276456933 7.596713622 6.872736655 7.838110655 7.35719527 7.075009947 7.527124401 39933093 ZntA Metal Resistance Zinc Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.710259299 8.536145444 8.340015729 8.153876443 8.283361116 8.165288159 8.104083816 8.021416223 7.80511322 229542907 pcc Carbon cycling Carbon fixation Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 7.55242821 7.401488011 7.471900438 7.306278051 7.020538477 7.337218663 7.360284436 7.511356396 84516091 AceA Carbon cycling Carbon degradation others Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 7.413251671 7.742948521 7.665905763 7.53018586 7.947203788 7.837357652 7.511947236 88776762 oxyR Stress Oxygen stress Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 7.919134199 8.014677729 7.756427847 7.768333268 8.148311187 8.35197022 8.294897595 8.019331593 7.984345861 118424379 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.560931279 7.389292465 7.113048828 7.458153278 7.557255706 7.242557902 7.603108803 26990810 AceA Carbon cycling Carbon degradation others Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.244211241 7.316538046 7.166162671 6.923506295 7.620656562 186467899 glnA Stress Nitrogen limitation Nostoc punctiforme PCC 73102 7.3136927 7.189738516 7.446702481 7.56301072 6.856291981 7.575762844 7.352028332 6.830046124 7.368622046 83756979 CadA Metal Resistance Cadmium Salinibacter ruber DSM 13855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 8.075902338 7.902117059 7.592014788 7.535710659 7.667948913 7.77566278 7.709096827 7.921062518 7.680856453 37959368 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.755730199 7.77986675 7.565664501 7.630484303 8.059896405 8.258415046 7.901529604 8.019858646 7.789712737 242279039 grpE Stress Heat shock Desulfovibrio salexigens DSM 2638 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio salexigens; 8.00739249 7.76011006 7.807111395 7.747045124 8.126366133 7.950414275 7.832071911 7.841722325 7.809623751 90415296 sigma_32 Stress Sigma factors marine gamma proteobacterium HTCC2207 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.110648642 7.271925594 6.930047187 6.849126458 6.696678727 7.259127002 6.914003473 7.31483284 90424687 tftH Organic Remediation Aromatics Chlorinated aromatics Rhodopseudomonas palustris BisB18 7.699883234 7.868393748 7.838035317 7.385923934 8.064999566 7.854327764 7.977020266 7.660821625 8.110631797 55232542 pstB Stress Phosphate limitation Haloarcula marismortui ATCC 43049 7.670323928 7.7456521 7.770841316 7.433050376 7.682730826 7.849489939 8.062373065 8.299541162 7.887227328 148842698 sigma_70 Stress Sigma factors Planctomyces maris DSM 8797 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces maris; 7.680133239 7.594649314 7.378402376 7.148999072 7.37456385 190333369 ara Carbon cycling Carbon degradation Hemicellulose Geobacillus stearothermophilus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.022548365 7.613279781 7.745208319 7.340516778 7.65860063 7.54378029 7.475280696 7.455723354 7.972369651 238793391 SMR_antibiotics Antibiotic resistance transporter Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 7.645598231 7.98502751 7.444421117 7.855772078 7.841836325 8.19830066 7.613845937 7.527711472 7.673650278 118582203 LMO Carbon cycling Carbon degradation Others Enterobacter cowanii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 8.146396867 7.907064611 7.769101787 7.579854274 7.843771528 7.912682724 8.190365058 91786267 tftH Organic Remediation Aromatics Chlorinated aromatics Polaromonas sp. JS666 7.143950047 6.765085087 6.950847746 6.729372446 99083121 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.291439165 7.270584014 7.307735375 7.021558249 7.044919942 7.432688157 7.145227491 7.063935834 7.428594379 151302319 APS_AprB Sulphur adenylylsulfate reductase sulfate-reducing bacterium DSM 12567 superkingdom:Bacteria; 6.803443487 7.421499125 192802761 nplT Carbon cycling Carbon degradation Starch Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.061789471 7.121211771 7.104395218 7.459203699 84499667 ureC Nitrogen Ammonification Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 8.634197336 8.90540247 8.596692864 8.794516572 8.969902624 8.890500102 9.108535915 9.063772813 8.973379459 119465693 amyA Carbon cycling Carbon degradation Starch Nodularia spumigena CCY9414 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nodularia;species:Nodularia spumigena; 8.097836209 8.076335163 7.826969439 7.847793009 8.253320693 7.790639809 8.287279676 8.019503648 7.935662525 157364535 rubisco Carbon cycling Carbon fixation Thermotoga lettingae TMO superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga;species:Thermotoga lettingae; 7.77185472 7.47109855 7.583628573 7.469266019 6.781013676 7.812355921 7.625648933 7.382095662 7.524096911 16414744 nplT Carbon cycling Carbon degradation Starch Listeria innocua 7.800123192 7.821957194 7.830119644 7.444200546 7.474660156 7.769649459 8.157673528 7.961290022 46519943 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.778758318 7.495589128 7.454350849 7.103322899 7.343163336 7.531169907 7.281842256 7.071237706 7.542171268 145596956 pimF Organic Remediation Aromatics Aromatic carboxylic acid Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 7.642198191 7.707466155 7.51091405 7.724623861 8.034944679 7.924446975 8.013411258 7.69821668 7.695749829 61743603 exoglucanase Carbon cycling Carbon degradation Cellulose Schizophyllum commune superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum; 8.848332685 8.311857867 7.924138093 8.182372977 8.646008321 8.389632878 8.658917012 8.15735786 8.457059839 110620422 rubisco Carbon cycling Carbon fixation uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 8.352976587 8.202320912 7.714230245 7.435330863 8.30160913 7.922791429 8.204263181 7.905656456 7.922358928 84694339 CueO Metal Resistance Copper Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8.304627593 8.421886478 8.184991229 7.963694102 8.013949908 7.793266205 8.010635482 7.528652748 187923658 sigma_24 Stress Sigma factors Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.745217863 7.680606373 7.730356455 7.937621905 7.535316285 7.419918313 7.709718854 7.464294911 260861383 pilin virulence pilin Leptotrichia hofstadii F0254 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteria;order:Fusobacteriales;family:Fusobacteriaceae;genus:Leptotrichia;species:Leptotrichia hofstadii; 6.967617458 6.941282042 6.822262475 7.432394392 6.838205336 6.788926389 210073278 Arylest Organic Remediation Aromatics Other aromatics Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.329126187 7.482205912 7.312399456 7.237926193 7.112887251 7.603755871 7.573416168 7.397990724 7.51597555 153009523 phn Organic Remediation Herbicides related compound Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 7.46336992 7.555052418 7.438372983 7.309359069 7.377509704 7.800771757 7.327486001 7.363936386 7.402136735 281422103 sigma_24 Stress Sigma factors Prevotella copri DSM 18205 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella copri; 6.947004187 7.222307047 7.304442653 16082229 cytochrome_b Bioleaching Electron transport Thermoplasma acidophilum DSM 1728;Thermoplasma acidophilum DSM 1728 6.984363004 7.238712217 7.037700587 6.489235913 7.523023638 89896315 nifH Nitrogen Nitrogen fixation Desulfitobacterium hafniense Y51 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 7.696930166 7.613910915 7.664231588 7.15024697 7.255286468 7.570754951 7.532265702 7.285364975 7.162001958 209869118 dsrA Sulphur sulfite reductase uncultured marine bacterium superkingdom:Bacteria; 7.550977459 7.664835644 7.434545468 7.657893751 7.497044821 7.487083872 7.839138406 7.608549098 7.403877344 39575286 iuc virulence aerobactin Bdellovibrio bacteriovorus HD100 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 7.528869244 7.281160082 7.364475181 7.237387255 6.843898987 7.390531613 7.332555114 7.12854105 6.927076611 224026793 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Bacteroides coprophilus DSM 18228 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides coprophilus; 7.684682479 7.718163812 7.453220258 7.70772434 7.408544396 7.379219958 7.433179355 7.487696621 33946401 sigma_38 Stress Sigma factors Pseudomonas syringae 7.517410238 7.508236511 7.196144602 7.707245374 7.192526479 7.656533969 7.415532449 7.465918161 7.603737442 145236094 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.462593743 7.141722039 7.193615213 6.909466022 7.55907818 7.114745567 7.172587012 184204415 ara Carbon cycling Carbon degradation Hemicellulose bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 7.104636718 7.856407448 8.00339619 7.541019694 8.138247774 8.007838968 8.034780367 8.15424688 7.959031213 13924101 aclB Carbon cycling Carbon fixation Corynebacterium glutamicum superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium; 7.213054784 7.430459753 281298425 ppk Phosphorus Phosphorus utilization Prevotella buccalis ATCC 35310 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccalis; 7.343540592 7.359644837 7.364364829 7.135707367 6.980164759 7.37344315 7.590425771 222086363 nhh Organic Remediation Aromatics Nitoaromatics Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.712723959 7.890532009 7.504792456 7.20151734 7.59809283 7.857606248 7.731010085 7.742960078 7.867292189 179350494 hrcA Stress Heat shock Natranaerobius thermophilus JW/NM-WN-LF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Natranaerobiales;family:Natranaerobiaceae;genus:Natranaerobius;species:Natranaerobius thermophilus; 6.664753055 7.444224446 156868601 cda Carbon cycling Carbon degradation Starch Clostridium leptum DSM 753 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 7.677762434 7.573311402 7.545500669 7.73343448 7.629041625 8.018646148 7.511806329 7.747443497 7.612692597 163812208 clpC Stress Protein stress Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.497574641 7.015290234 69279982 ArsC Metal Resistance Arsenic Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 7.327585639 7.117794932 7.512197283 7.392975261 7.035589352 7.184128419 7.028775806 219563164 nahA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 6.892118591 6.798310069 7.349714712 148259225 glycosyl_transferase_EPS Bioleaching EPS Acidiphilium cryptum JF-5 7.760903112 7.733078278 7.23694551 7.897480309 7.754304166 7.646314971 7.724227773 7.976992092 109290190 ssb Bacteria phage REPLICATION Aeromonas phage 25 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.098839631 7.973293969 7.207820758 7.722482977 6.740255036 7.200593908 7.113166489 7.444199423 229918060 fnr Stress Oxygen stress Exiguobacterium sp. AT1b 7.342353656 7.379955877 7.306808999 7.114725633 7.546504874 7.347285435 7.230080796 219718505 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Stenotrophomonas sp. SKA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 7.787475359 7.124801847 7.307632256 7.337844705 7.524306246 7.845555807 7.333777496 7.363428596 7.18523084 84689813 sigma_70 Stress Sigma factors Parvularcula bermudensis HTCC2503 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 8.175049231 8.160778602 7.655735498 7.783205043 8.343840159 8.237251878 8.07263994 8.027497081 172064008 mauAB Organic Remediation Herbicides related compound Burkholderia ambifaria MC40-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 8.125008638 8.191438031 8.16181008 8.23721188 8.373533591 8.41725225 8.456243604 8.359171688 8.157063863 211958332 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 7.360178445 7.36707562 7.029467905 6.918815126 6.771831691 7.558229193 7.058081561 6.985923777 134098276 alkK Organic Remediation Others Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 7.11924776 7.359291148 7.415179026 7.254170998 7.238370461 7.85828929 7.122330525 7.398991995 7.181647501 77383846 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.638619882 7.267624166 7.337554393 7.777953359 7.315643846 8.106488856 7.033012609 7.491961909 7.426695597 119454790 rubisco Carbon cycling Carbon fixation Lyngbya sp. PCC 8106 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Lyngbya; 6.542144869 7.48990793 88793605 ppx Phosphorus Phosphorus utilization Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 7.696053706 7.744467434 7.469301027 7.154087356 7.439370505 7.684970795 7.39966084 7.492904406 7.576574979 163743311 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 7.447694388 7.495684892 7.215915535 6.727631535 7.070240188 7.787862407 7.208589404 6.965633471 7.252807908 178467446 TerD Metal Resistance Tellurium Streptomyces griseus subsp. griseus NBRC 13350 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 8.294210602 8.573180584 8.368877074 8.374147966 8.610245502 8.551505946 8.66866756 8.408325063 8.166583956 147886216 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 7.662301675 7.450122287 7.587370531 7.537494702 7.144727762 7.847510879 7.522539456 7.599208465 7.43689956 88811911 ahpC Stress Oxygen stress Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 7.260833024 7.273110749 7.198982909 6.972200798 8.029173327 253561993 obgE Stress Radiation stress Clostridium botulinum D str. 1873 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium botulinum; 7.113597253 6.814984603 7.494499215 6.909849644 6.307540057 7.164124733 6.808813562 7.207189958 89333888 ChrA Metal Resistance Chromium Desulfitobacterium hafniense Y51 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 7.972980828 7.53262887 7.495964079 7.334767858 7.177417178 7.759154101 7.485699209 7.306488794 7.238139134 145242042 BpH Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8.174159358 8.103655247 7.761380456 8.177902342 7.89826567 7.949779482 7.954391123 7.752863152 8.116886733 126032277 endochitinase Carbon cycling Carbon degradation Chitin Hypocrea jecorina superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 6.947445856 7.269066904 6.788886451 6.775844252 7.399972861 7.179037776 6.923638833 16081288 ahpF Stress Oxygen stress Thermoplasma acidophilum DSM 1728 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermoplasmata;order:Thermoplasmatales;family:Thermoplasmataceae;genus:Thermoplasma;species:Thermoplasma acidophilum; 7.301415415 7.228514171 7.082212649 7.07029211 7.736088062 6.987661209 7.046329199 28870032 cytochrome Energy process Energy process Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 6.975170535 7.524398069 262079184 amyA Carbon cycling Carbon degradation Starch Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Haliangiaceae;genus:Haliangium;species:Haliangium ochraceum; 7.859269607 7.630662531 7.611527863 7.103076787 7.460576151 90856149 sox Sulphur Sulphur oxidation Allochromatium vinosum superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium; 7.037717679 6.835373887 119391419 narG Nitrogen Denitrification uncultured bacterium 7.803001107 6.919835078 7.203443888 6.84013369 7.615018959 7.278097791 7.471910845 7.353771915 94470861 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.369188713 7.405006154 37548700 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 6.808212301 6.888318881 74489684 nmoA Organic Remediation Aromatics Nitoaromatics Bacillus thuringiensis serovar israelensis ATCC 35646 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus thuringiensis; 7.607791687 7.766987273 7.514044966 7.056028687 7.259234129 7.878858341 7.85618771 7.890538334 7.842407863 62512288 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.433815679 7.489160389 7.762764602 6.951433872 7.312941397 7.396442571 7.416124987 85818996 clpC Stress Protein stress Dokdonia donghaensis MED134 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Dokdonia;species:Dokdonia donghaensis; 7.299520261 7.277612414 7.115709092 7.757512846 7.259723916 7.631390524 167036441 gyrB other category gyrB Thermoanaerobacter pseudethanolicus ATCC 33223 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Thermoanaerobacter;species:Thermoanaerobacter pseudethanolicus; 7.113243058 7.325346581 218322939 nrfA Nitrogen Dissimilatory N reduction Vibrio splendidus LGP32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 7.39830619 7.420269275 7.40365287 7.34165555 6.748869931 7.468608568 7.643886764 61398352 mcrA Carbon cycling Methane Methane production uncultured archaeon superkingdom:Archaea; 8.242544669 8.052744077 8.065807316 7.613369221 7.920296286 8.014793802 8.195659901 8.338008082 8.282424229 22298303 hrcA Stress Heat shock Thermosynechococcus elongatus BP-1 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Thermosynechococcus;species:Thermosynechococcus elongatus; 6.752387702 7.121282124 227953156 ahpC Stress Oxygen stress Meiothermus silvanus DSM 9946 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 8.580823489 8.519074179 8.443174907 8.235440292 193089833 amyA Carbon cycling Carbon degradation Starch Chloroherpeton thalassium ATCC 35110 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chloroherpeton;species:Chloroherpeton thalassium; 7.768904584 7.663641554 7.644488296 7.090914741 7.173854544 7.114434147 7.482375779 212679517 CopA Metal Resistance Copper Providencia rustigianii DSM 4541 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 7.608441209 7.565942217 7.452039009 7.07799973 7.253535181 7.790960813 7.454819127 7.247861612 7.551658563 269102357 pstB Stress Phosphate limitation Photobacterium damselae subsp. damselae CIP 102761 7.201370887 6.903754309 89092442 oxyR Stress Oxygen stress Oceanospirillum sp. MED92 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Neptuniibacter; 7.512652498 7.490455079 7.333628336 7.1460001 7.749489964 94315075 nreB Metal Resistance Nickel Serratia marcescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 7.500802548 7.958357858 8.152098246 7.552268191 7.474141871 7.772637585 7.992647468 224018094 katE Stress Oxygen stress Bacteroides coprophilus DSM 18228 6.697754311 7.052164236 71002412 pheA Organic Remediation Aromatics Other aromatics Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 8.045130834 7.948168573 7.691329475 7.584583613 8.010145092 8.040087936 8.019638514 7.967175626 7.803378553 121555800 pcc Carbon cycling Carbon fixation Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 7.319558271 7.539189023 7.384433674 6.720943554 7.711799307 6.991821327 7.040731121 281403707 obgE Stress Radiation stress Prevotella copri DSM 18205 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella copri; 7.274430474 7.080096061 7.224011431 254460121 BchY other category chlorophyllide reductase Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.255740752 8.218402565 8.111048008 7.763501718 7.820508808 7.845814491 7.92437726 7.722736575 7.619444527 251792641 iro virulence Aggregatibacter aphrophilus NJ8700 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Aggregatibacter;species:Aggregatibacter aphrophilus; 7.448658263 7.330518904 7.961186414 7.667216557 7.171875351 7.936652996 7.424270838 7.489831823 7.318696163 221532578 pcaG Organic Remediation Aromatics Other aromatics Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 7.228741936 7.684005612 7.779659035 7.83798799 8.062584718 7.352234595 7.211675751 7.540763226 60360650 B_lactamase_A Antibiotic resistance Beta-lactamases Photobacterium damselae subsp. piscicida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium damselae; 7.42561363 7.364583967 7.155691029 7.169393499 7.137963522 7.873341795 7.44128419 7.228383261 7.479213978 225209041 Tet Antibiotic resistance other Coprococcus comes ATCC 27758 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Coprococcus;species:Coprococcus comes; 7.80046598 6.872887014 7.408214966 7.629019564 225699743 sigma_70 Stress Sigma factors Streptococcus equi subsp. equi 4047 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus equi; 7.657927517 7.872812083 7.697212964 7.88354997 7.783393468 8.384522973 8.038175439 8.144241713 7.368642934 20516766 sigma_70 Stress Sigma factors Thermoanaerobacter tengcongensis MB4 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Thermoanaerobacter;species:Thermoanaerobacter tengcongensis; 6.975835966 6.913542417 126009095 phosphoheptose_isomerase_EPS Bioleaching EPS Ferroplasma acidarmanus fer1 7.082098596 6.855118065 228697555 Tet Antibiotic resistance other Bacillus cereus Rock3-44 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 7.291482661 7.053635782 148565481 cumA Organic Remediation Aromatics Other aromatics uncultured bacterium 7.327741514 7.495517907 7.511405864 7.496947737 7.604295373 7.604057012 7.418542713 7.667178792 126720984 vanA Carbon cycling Carbon degradation Others Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.0158947 7.823009713 8.002897604 7.911272547 8.147610907 7.852038773 8.158544705 8.333544615 7.729731504 247534051 amyA Carbon cycling Carbon degradation Starch Aggregatibacter aphrophilus NJ8700 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Aggregatibacter;species:Aggregatibacter aphrophilus; 7.400621734 6.995328995 7.175776726 7.18390717 6.828996321 7.523436254 7.025150626 7.160959561 157693795 proV Stress Osmotic stress Bacillus pumilus SAFR-032 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pumilus; 7.378862814 7.502370141 7.642402387 7.259715595 7.880887616 88643307 dsrB Sulphur sulfite reductase uncultured prokaryote 7.897269943 7.777408069 7.683623851 7.571258697 8.057303057 8.287461625 8.006116711 7.545726784 7.884834837 15077490 dsrB Sulphur sulfite reductase Thermodesulforhabdus norvegica superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Thermodesulforhabdus; 7.204459089 6.948845721 7.127401872 186477878 bphA Organic Remediation Aromatics Polycyclic aromatics Rhodococcus sp. HA01 7.811764731 7.336207377 7.212230048 7.155343061 7.345941751 7.782763439 7.348699116 7.526831187 197286722 pstS Stress Phosphate limitation Proteus mirabilis HI4320 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 6.83732485 7.08192831 7.07622219 6.904735222 6.85222608 54297174 nhh Organic Remediation Aromatics Nitoaromatics Legionella pneumophila str. Paris 7.245943583 7.202445967 7.258256264 6.910546327 6.779281301 7.484558331 7.259543804 7.163943714 7.403431812 224463580 oxyR Stress Oxygen stress Methylophaga thiooxidans DMS010 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Methylophaga;species:Methylophaga thiooxidans; 7.285106949 6.877494417 7.29694081 6.977725196 6.775254934 7.14538511 7.122374675 7.222836496 145273394 MFS_antibiotic Antibiotic resistance transporter Haemophilus influenzae 22.4-21 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus influenzae; 7.223258572 7.376119982 7.026924616 116694822 xlnD Organic Remediation Aromatics Other aromatics Ralstonia eutropha H16 7.891141463 7.74970919 7.627008928 7.545463457 8.150532525 7.964998991 8.003957308 8.09166974 8.001486566 209519444 xylC Organic Remediation Aromatics BTEX and related aromatics Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.445170049 7.642376131 7.476895125 7.125641294 7.40014545 7.893029339 7.572319513 7.436132317 7.506159725 150274540 obgE Stress Radiation stress Bacteroides capillosus ATCC 29799 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides capillosus; 7.184101507 7.143575708 7.796222764 7.523064109 7.651937549 7.570755155 7.293500512 270332593 sigma_24 Stress Sigma factors Prevotella bergensis DSM 17361 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bergensis; 6.977498573 7.042416354 7.209743876 6.459158633 7.300738441 239822770 katE Stress Oxygen stress Ochrobactrum intermedium LMG 3301 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 7.703155919 8.034684567 7.765812487 7.876071599 8.503171177 8.093404872 8.47284074 8.10949144 8.141664863 162072853 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.232347629 7.22713721 7.847431745 7.61510293 170776218 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 7.84938986 7.698274593 7.596210489 7.394091992 7.927725315 8.179215751 7.639947372 7.443185354 7.43149111 30021726 alkK Organic Remediation Others Bacillus cereus ATCC 14579 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 6.636266496 7.544012797 67778276 CODH Carbon cycling Carbon fixation Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 7.904818275 7.881352896 7.581230288 7.727758961 7.518277975 7.669585913 7.543905855 7.569773682 7.468712367 56710238 Catechol Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 7.643457619 7.487224887 7.500860976 7.420763946 8.05807717 8.002216078 7.899616799 7.862776534 260839854 SMR_antibiotics Antibiotic resistance transporter Vibrio sp. RC341 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.16600498 8.041248098 7.903749993 8.498524252 8.567539708 8.331191252 8.313116834 8.398606103 7.994537085 222113737 gdh Nitrogen Ammonification Streptococcus uberis 0140J superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus uberis; 7.107490098 7.247960088 6.872674975 6.532712969 7.340728918 7.004063939 6.972238135 254970802 sox Sulphur Sulphur oxidation Acidithiobacillus caldus ATCC 51756 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 6.987085624 7.25730665 254514289 pcc Carbon cycling Carbon fixation gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 6.773818663 7.175998326 283819617 sigma_24 Stress Sigma factors Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 7.252471692 7.436067436 7.105374135 6.786707597 7.034680187 157373357 cytochrome Energy process Energy process Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 7.685956412 7.857971431 7.874393794 7.865210964 8.101376277 8.056495921 8.223253427 8.128502829 85668389 bclA Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.963351645 7.560522749 7.791733726 7.782625381 7.051249198 8.106948447 7.257551352 7.393345903 154351597 tnrA Stress Nitrogen limitation Bacillus amyloliquefaciens FZB42 7.576889948 7.467443696 7.731908919 7.357514485 7.541415953 91223183 tutFDG Organic Remediation Aromatics BTEX and related aromatics Vibrio alginolyticus 12G01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 7.612377266 7.661914144 7.410922548 7.277670366 7.251243009 7.621452732 7.571442517 7.031483157 7.28229873 145047142 nbzB Organic Remediation Aromatics Nitoaromatics Polynucleobacter sp. QLW-P1DMWA-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 7.326738305 7.149026468 7.180837851 6.877348659 7.40477015 251809434 rubisco Carbon cycling Carbon fixation Gallionella ferruginea ES-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Gallionella;species:Gallionella capsiferriformans; 7.295595662 7.149232095 7.477016242 6.926955132 7.454701658 94967359 ara Carbon cycling Carbon degradation Hemicellulose Acidobacteria bacterium Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 7.777013835 7.490765438 7.455443184 7.521183204 7.42502061 7.734657716 7.51350459 7.61170206 199594047 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.287233168 7.201225784 7.297696196 7.210344317 7.07066526 7.580195311 118034411 mauAB Organic Remediation Herbicides related compound Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.12982241 8.059057739 7.884535382 8.17496418 8.205256854 8.341496572 8.188015793 8.16764056 8.293743614 60476006 rubisco Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.1742045 8.433089705 7.841762115 7.960569465 8.681566686 8.169619545 8.010650254 8.269765131 127512008 cytochrome Energy process Energy process Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 7.129209251 7.049829569 7.098044851 6.927654444 6.822489614 218158697 colonization_factor virulence colonization factor Vibrio cholerae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.110530379 7.112073866 113473781 proO Organic Remediation Aromatics Other aromatics Sphingomonas sp. KA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 7.83450076 7.659021457 7.313476934 7.343006407 7.702207035 8.007424434 7.937167199 7.642600645 7.921953137 218564184 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.24762208 7.276795333 7.125669316 7.020216828 6.900595255 88597946 pstC Stress Phosphate limitation Anaplasma phagocytophilum HZ superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales;family:Anaplasmataceae;genus:Anaplasma;species:Anaplasma phagocytophilum; 7.226163119 6.962261431 149808743 Mex Antibiotic resistance transporter Moritella sp. PE36 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Moritellaceae;genus:Moritella; 7.380047359 7.386895668 7.118179951 7.398751005 7.106558334 7.59631167 7.294190949 7.598143516 159896565 katE Stress Oxygen stress Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 7.686942011 7.490100657 7.255785315 7.070483982 7.29975383 7.546838577 7.201091638 7.151577534 71737205 type_III_secretion virulence secretion Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 8.339007276 8.230445071 8.303269702 7.69878555 8.341726966 8.186892131 8.098025371 8.096334701 8.450423372 49530855 pchA Organic Remediation Aromatics BTEX and related aromatics Acinetobacter sp. ADP1 7.294227651 6.90921904 194467941 gyrB other category gyrB Lactobacillus reuteri 100-23 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus reuteri; 7.559636966 7.211260125 7.61518584 7.061938965 7.058744778 7.576843299 406538 fnr Stress Oxygen stress Shewanella putrefaciens 7.114781367 6.666241537 62421696 nifH Nitrogen Nitrogen fixation Oscillatoria sp. PCC 6506 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Oscillatoria; 7.347675288 7.191563853 7.297341214 6.855077782 7.052218903 7.484484477 7.068291009 7.115099025 7.412580926 157404619 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.277256201 7.298078392 7.284167071 6.649869374 7.10889679 7.402516146 7.183717825 6.814071207 126315946 nagG Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.710768172 7.594574777 7.338129438 7.067678857 7.777317181 7.470164479 7.480475446 7.187465764 91199950 CopA Metal Resistance Copper Candidatus Kuenenia stuttgartiensis superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;genus:Candidatus Kuenenia; 7.553102116 6.990450829 7.462056513 7.744713255 7.441591685 7.309375692 7.136822165 115254776 ChnA Organic Remediation Other Hydrocarbons Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.631731628 7.042734936 7.486211456 8.018605021 7.750495834 7.255945483 7.867447085 55229208 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 7.771855847 7.972453343 7.724993356 7.901027067 8.292192376 7.994998174 7.985665298 7.981015027 8.023966387 224283983 ahpF Stress Oxygen stress Bifidobacterium bifidum NCIMB 41171 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium bifidum; 7.829647129 8.13108819 7.927849358 8.127007568 8.135422453 8.068555557 7.547177802 7.796604519 15890349 oxyR Stress Oxygen stress Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.780703089 7.651823846 7.442445644 7.79724932 7.614074534 7.907578504 7.830755187 7.805226795 146220121 Arylest Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 7.278657759 7.340694884 7.003140731 7.091458737 7.443908514 7.184471786 7.048116753 110631028 nifH Nitrogen Nitrogen fixation uncultured soil bacterium superkingdom:Bacteria; 7.674669919 7.496204568 7.53190463 7.467675799 7.565355924 7.717107414 7.638003933 7.647791124 7.777202171 90419526 ppx Phosphorus Phosphorus utilization Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 7.77386592 7.731037979 7.427209433 7.7916312 7.766368129 7.977295353 89512826 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.425634482 7.178900739 7.051730564 6.80407313 7.407539985 254449272 sigma_38 Stress Sigma factors gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.837796802 7.501873082 7.124414384 7.008789042 7.33413377 7.711812168 7.477369018 7.12916541 7.245907884 198033775 APS_AprA Sulphur adenylylsulfate reductase endosymbiont of Oligobrachia haakonmosbiensis 7.487525129 7.454555886 7.222442062 7.329164832 7.65015274 7.268542048 7.187972599 256396763 pstA Stress Phosphate limitation Catenulispora acidiphila DSM 44928 8.209320874 8.16028583 8.47145163 7.872609008 8.247917413 8.268739263 7.945769842 8.13882131 7.88498649 110634704 nmoA Organic Remediation Aromatics Nitoaromatics Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 7.259305836 7.412236529 7.660689207 7.503083673 7.71851407 7.639242406 7.927841335 7.957489871 157016076 pbrA Metal Resistance Lead Anopheles gambiae str. PEST superkingdom:Eukaryota;kingdom:Metazoa;phylum:Arthropoda;class:Insecta;order:Diptera;family:Culicidae;genus:Anopheles;species:Anopheles gambiae; 7.802126636 7.857040336 7.419558135 7.123627516 7.21790861 7.439150484 7.669959991 161165499 sigma_24 Stress Sigma factors Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 7.271925543 7.752436343 7.934264319 7.69582918 7.588066824 7.609679734 7.874045738 7.77877145 84489913 nifH Nitrogen Nitrogen fixation Methanosphaera stadtmanae DSM 3091 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanobacteria;order:Methanobacteriales;family:Methanobacteriaceae;genus:Methanosphaera;species:Methanosphaera stadtmanae; 7.618734006 7.471727711 7.828294375 7.480513349 7.363552396 7.774227624 7.388614004 7.575850158 7.810047613 256672234 sigma_24 Stress Sigma factors Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7.531181491 7.513811084 7.698660528 7.493969851 7.482669508 7.638180346 7.442227162 7.66617794 7.52433707 242263256 mannanase Carbon cycling Carbon degradation Hemicellulose Clostridium cellulovorans 743B superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium cellulovorans; 7.214716963 7.327507753 169604891 ara_fungi Carbon cycling Carbon degradation Hemicellulose Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 7.162398338 7.155198739 7.222004908 148261157 cytochrome_c Bioleaching Electron transport Acidiphilium cryptum JF-5 8.297053914 8.061532689 7.959113843 7.989844102 8.016048722 8.148350562 7.967932568 7.80861294 7.940161095 90329402 rd Organic Remediation Chlorinated solvents Photobacterium profundum 3TCK superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 7.814053278 7.781402515 7.719660381 7.442206483 7.593915475 7.459832407 7.371305509 7.453601815 116688201 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia cenocepacia HI2424 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 7.976362445 8.026394032 7.720666542 7.553534908 7.842774295 8.062290829 7.766145972 7.464570582 7.598514696 163794005 sox Sulphur Sulphur oxidation alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 8.130452211 7.853730099 7.523279626 7.683753439 7.992462222 8.063938661 7.997775593 7.778840492 8.168572874 27817712 bphF1 Organic Remediation Aromatics Polycyclic aromatics Cupriavidus oxalaticus 7.864002485 7.799672287 7.570617404 7.799492808 8.109547818 7.738369978 8.05709255 7.860182611 7.785686136 146146930 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.582071158 7.540911925 7.260994858 7.255179625 7.301872284 7.809207567 7.384864967 7.021066589 7.476408619 77384103 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.009124105 7.853771445 8.237281199 8.132504267 8.639277216 8.449642072 8.310149133 8.613686653 219666798 fnr Stress Oxygen stress Desulfitobacterium hafniense DCB-2 7.42860848 7.300219443 7.357001386 6.665940058 7.455348759 91687594 nmoA Organic Remediation Aromatics Nitoaromatics Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.680891485 7.522362264 8.244253326 8.401308179 7.7876162 7.779384455 7.826819253 7.717532818 109452488 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.937648544 7.663707823 8.185339823 8.048469969 7.287240681 8.155339041 7.698400682 8.008061819 7.762573235 157804730 APS_AprA Sulphur adenylylsulfate reductase Thiocapsa roseopersicina 7.434473093 7.338284794 7.079681032 7.323798638 7.51699556 7.477969054 7.347110972 6.98522382 7.443668317 126627460 ChnE Organic Remediation Other Hydrocarbons Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 7.346107401 7.168990324 7.277208846 7.413772973 154272834 katE Stress Oxygen stress Ajellomyces capsulatus NAm1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 7.568406059 7.366497417 7.665051578 7.809886792 206586792 oxyR Stress Oxygen stress Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 7.652953855 7.469793201 7.186786594 6.947532996 7.220508548 7.626740328 7.224043784 6.983770876 7.496326682 116751294 sigma_24 Stress Sigma factors Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 7.434415392 7.553130962 7.3284102 7.111613637 7.294265381 7.75284618 240009575 pstB Stress Phosphate limitation Methylobacterium extorquens AM1 7.683352871 7.353960552 7.60842041 7.589691791 7.319403787 7.401500982 7.551573179 190695550 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.686490851 7.947683664 8.101729523 7.664580505 8.108875672 7.96591197 8.099803016 8.16545708 8.166445456 91976608 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.510847185 7.685284336 7.624277034 7.068232845 7.56603441 7.588537017 7.517559685 7.325491776 7.546684531 149360221 pheA Organic Remediation Aromatics Other aromatics Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 7.517082957 7.190884289 7.001996948 7.160806086 7.01755007 7.688552927 7.358683834 7.220451081 251782196 cap virulence capsule Streptococcus dysgalactiae subsp. equisimilis GGS_124 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus dysgalactiae; 7.379562282 7.525722367 7.506885815 7.182065831 7.565763493 27382179 linB Organic Remediation Pesticides related compound Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.192082204 7.496915384 7.687635348 7.888828648 7.013224962 7.922102199 7.056686439 7.572987665 124257907 tutFDG Organic Remediation Aromatics BTEX and related aromatics Geobacter grbiciae superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.393209774 8.132475954 8.07967691 7.808583158 7.810585036 8.202440656 8.052995811 8.106653844 8.575006522 212557630 pimF Organic Remediation Aromatics Aromatic carboxylic acid Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 7.344528638 7.270320391 7.134104792 7.104805082 27382807 fnr Stress Oxygen stress Bradyrhizobium japonicum USDA 110 7.323054453 6.927605428 6.928312988 157285318 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.664905761 7.701101514 7.371411155 7.109755864 7.298668388 7.581019202 7.538879442 7.409293376 15920831 cytochrome_c Bioleaching Electron transport Sulfolobus tokodaii str. 7 7.221323826 7.080388335 156743673 BchY other category chlorophyllide reductase Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 8.115028871 8.007151154 7.884013165 7.962021141 7.976970649 7.801022557 7.286070627 7.748739985 85694654 glnA Stress Nitrogen limitation Idiomarina baltica OS145 7.345419483 7.153034477 6.960646687 7.12556235 163140820 mcrA Carbon cycling Methane Methane production Candidatus Methanosphaerula palustris superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;genus:Methanosphaerula; 8.651983092 8.870942453 8.373929497 8.523285731 9.099356714 8.347321583 8.618194708 8.592813755 8.733142984 194309899 BchY other category chlorophyllide reductase Pelodictyon phaeoclathratiforme BU-1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 7.365570505 7.266587009 7.162018384 6.895095071 13814543 AceA Carbon cycling Carbon degradation others Sulfolobus solfataricus P2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus;species:Sulfolobus solfataricus; 7.195431958 7.128712181 7.244721899 83844958 vanA Carbon cycling Carbon degradation Others Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 6.995826113 7.340682656 7.247532843 7.097027688 6.718197263 126724575 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2150 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.119598118 7.094483333 7.445316485 83749300 dehH Organic Remediation Chlorinated solvents Ralstonia solanacearum UW551 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 7.790483356 7.518076574 7.667518675 7.166518296 7.526915945 7.767103883 7.602782418 7.681625367 7.863254096 219542959 fnr Stress Oxygen stress Chloroflexus aggregans DSM 9485 7.00035108 7.036535331 7.404100726 7.187921009 7.065310782 7.638686129 7.611234153 7.872243867 11037224 pcaG Organic Remediation Aromatics Other aromatics Agrobacterium tumefaciens superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 7.413015901 7.558948527 114197670 amyA Carbon cycling Carbon degradation Starch Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 6.76177536 7.503617534 7.694058062 62425502 ZntA Metal Resistance Zinc Brevibacterium linens BL2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium linens; 6.909247857 6.947091741 7.271817467 6.841512689 229543756 ahpC Stress Oxygen stress Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 7.375904922 7.094563131 7.048190662 104781696 nagG Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas entomophila L48 7.150037781 7.186201505 7.430736697 7.151164759 7.268946881 7.339600207 86572402 amyA Carbon cycling Carbon degradation Starch Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.781519801 7.419711621 7.611918862 7.778889498 7.559723195 7.365979045 7.279579286 219965652 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.311543021 7.127578165 7.120661754 218751178 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.043951686 7.651783464 7.955264718 7.316489394 8.074425219 7.857917709 7.941223479 8.027836577 8.01881802 238750399 grpE Stress Heat shock Yersinia rohdei ATCC 43380 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia rohdei; 7.337440328 7.701673437 7.154082075 6.681175707 6.816541101 213979897 nagI Organic Remediation Aromatics Aromatic carboxylic acid Salmonella enterica subsp. enterica serovar Typhi str. AG3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 8.108133101 8.067639771 7.939332622 7.720355798 8.477249248 7.937243814 7.957462781 8.005956444 77457129 linB Organic Remediation Pesticides related compound Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 6.850764192 7.174941047 6.822606728 7.358642641 183176043 linB Organic Remediation Pesticides related compound Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 8.148276108 7.647628169 7.452571618 7.681922961 8.063968001 7.970228703 7.888295432 262222096 sigma_38 Stress Sigma factors Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;species:Grimontia hollisae; 7.922852209 7.885676684 7.574189069 7.820327945 7.367003976 7.285678802 7.368263284 76574534 T4_type_portal_protein Bacteria phage REPLICATION Synechococcus cyanophage syn9 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.424688706 7.274881666 7.103365183 6.945378418 7.178427063 87295508 merP Metal Resistance Mercury Escherichia coli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 7.452932026 7.244071388 7.645185599 7.686658633 7.078408986 7.978076035 7.390225852 7.187198819 7.779645968 229865545 pstC Stress Phosphate limitation Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 7.813888836 8.279637297 8.378524538 8.056988079 8.569973354 8.210713941 8.441591889 8.272934512 8.158531247 160932276 ara Carbon cycling Carbon degradation Hemicellulose Clostridium leptum DSM 753 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 7.50761573 7.394765526 7.578186055 6.989153515 7.390558309 7.549896357 7.473038988 7.377417985 7.476400713 119226108 pheA Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 7.528603152 7.526957849 7.248638079 7.141628674 7.356232107 7.385224098 7.636693657 7.363950488 150840317 obgE Stress Radiation stress Actinobacillus succinogenes 130Z superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus succinogenes; 7.478885348 7.51708417 7.676787204 7.350106132 7.727021207 120405344 bphF1 Organic Remediation Aromatics Polycyclic aromatics Mycobacterium vanbaalenii PYR-1 7.928170757 7.825922818 7.898602206 7.662451386 8.116993643 7.867351228 7.811470773 8.02118603 7.57018805 251753981 phoB Stress Phosphate limitation Pectobacterium carotovorum subsp. carotovorum PC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 7.905555473 7.781782187 119956473 chnB Organic Remediation Other Hydrocarbons Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 7.451656919 7.201798418 7.199947587 7.722079778 7.658610126 7.933841998 7.43887054 7.45492286 166362924 fnr Stress Oxygen stress Microcystis aeruginosa NIES-843 7.544640849 7.421678195 7.780296065 7.427144959 7.984960122 78034355 4HBH Organic Remediation Aromatics BTEX and related aromatics Xanthomonas campestris pv. vesicatoria str. 85-10 7.437483161 7.362775178 7.253634783 7.060953027 6.907672358 7.513335565 7.20717732 6.962393984 108464243 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 7.220329236 7.392569109 7.002726316 7.044765526 7.277198085 90954655 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.87972661 7.795024864 7.663585777 32307987 narG Nitrogen Denitrification uncultured bacterium 7.895632426 7.920863491 7.293122938 7.481526362 7.509184558 7.947858556 7.572020901 7.327912727 221075777 ChrA Metal Resistance Chromium Blautia hansenii DSM 20583 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Blautia;species:Blautia hansenii; 8.693876478 8.199146711 7.797873977 8.390650932 8.408399546 8.501179879 8.67693361 8.61832539 7.892922234 262354539 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Bacteroides sp. 2_1_22 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 7.007675779 6.734299298 7.162330363 6.802877784 7.361958742 7.080955559 6.839438016 37527167 amyA Carbon cycling Carbon degradation Starch Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 7.229376352 7.29129187 7.065427961 7.343348616 218666466 pstB Stress Phosphate limitation Acidithiobacillus ferrooxidans ATCC 23270 7.065926242 7.87985622 261837422 glnA Stress Nitrogen limitation Halothiobacillus neapolitanus c2 7.758355187 7.516147073 7.414530518 7.070744882 7.102276907 7.73366568 7.386401719 7.579767091 7.323127446 106765911 endochitinase Carbon cycling Carbon degradation Chitin Clostridium phytofermentans ISDg superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium phytofermentans; 7.256824171 7.362242136 7.172407155 6.836397413 7.652070838 197628105 atzA Organic Remediation Herbicides related compound Thermococcus barophilus MP superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus barophilus; 7.569116645 7.43207671 7.146570953 6.855131723 7.097656749 7.084246555 7.182188428 7.039917002 283815187 sigma_24 Stress Sigma factors Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 7.262541613 7.117123046 6.695682135 6.735972297 7.26698417 6.616881599 7.049216204 37962697 aoxB Metal Resistance Arsenic arsenite-oxidising bacterium NT-26 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae; 8.016082382 7.642904368 7.578904501 7.252566665 7.5195429 256822560 narH Stress Oxygen limitation Kangiella koreensis DSM 16069 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Kangiella;species:Kangiella koreensis; 7.401851733 7.32398228 23095477 pstB Stress Phosphate limitation Streptococcus agalactiae NEM316 7.686933388 7.523624581 7.999529699 7.212177624 7.866851718 7.851503527 7.893327945 8.129598003 7.57270701 21326997 amyA Carbon cycling Carbon degradation Starch Thermococcus sp. 'AEPII 1a' superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus; 7.267570714 7.287063346 7.670313672 7.417899748 7.473210444 211958594 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 7.885323384 7.54264462 7.85021923 7.094505944 8.00565268 7.684284041 7.88239741 7.708726528 219550340 AceA Carbon cycling Carbon degradation others Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 8.237355314 8.229680317 7.971905417 7.304220783 8.293351624 7.932090065 8.051072164 8.207032692 8.117123098 94314073 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 7.584448672 7.619840361 7.325310734 7.677390658 7.985415378 7.959148842 8.076913826 7.782748882 7.644959067 70672975 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.598562196 7.41938255 7.282405271 7.250352886 7.514702742 70729553 ArsC Metal Resistance Arsenic Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.35449992 7.298616017 7.153585791 4928216 groEL Stress Heat shock Chloroflexus aurantiacus superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus; 8.115932917 8.241131341 8.247602045 8.46445363 8.267735405 8.501675519 8.579287989 8.51599323 8.321495264 187727364 fnr Stress Oxygen stress Ralstonia pickettii 12J 7.265537458 6.974174616 7.404044921 6.8963347 6.984172966 7.404452725 114188449 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.181866113 6.956975 7.399707673 6.537483407 7.552435888 227890620 glnR Stress Nitrogen limitation Lactobacillus salivarius ATCC 11741 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus salivarius; 7.201009976 7.085771248 6.583329248 7.396969504 229469826 obgE Stress Radiation stress Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 7.524797645 7.763602337 7.279272333 7.551323312 7.6036786 7.021828991 7.082465294 256782151 ara Carbon cycling Carbon degradation Hemicellulose Streptomyces hygroscopicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces hygroscopicus; 10.34066061 10.43727219 10.46045393 229787059 glnA Stress Nitrogen limitation Catonella morbi ATCC 51271 7.109106951 7.233687645 6.906121594 6.673100926 7.377257528 221069789 pilin virulence pilin Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 6.946461013 6.621361545 7.052909935 225792525 pstS Stress Phosphate limitation Acidobacterium capsulatum ATCC 51196 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteria;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 7.612306963 7.447804202 6.954861135 7.197314531 6.842013759 7.451858014 187478277 nagK Organic Remediation Aromatics Aromatic carboxylic acid Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 7.801900435 7.891792581 7.790863992 7.220620825 7.579049004 7.966201837 8.062947189 7.91947062 126719060 chnB Organic Remediation Other Hydrocarbons Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 6.877683853 7.052479367 6.9696559 7.41891601 227167883 obgE Stress Radiation stress Lactobacillus jensenii JV-V16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus jensenii; 7.894666217 7.745946089 7.948665578 7.607931818 7.767702235 8.11826283 8.326504674 8.187977604 7.832143723 113525675 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.33251705 7.815365229 8.05488439 7.677491056 8.526855219 7.643591448 8.021165771 7.765018317 8.16933073 254788383 pstB Stress Phosphate limitation Teredinibacter turnerae T7901 7.356114103 7.448971291 7.510520453 7.332242866 7.669710985 7.148349166 7.431889993 7.541101221 7.415589035 156081426 alkB Organic Remediation Other Hydrocarbons Geobacillus thermoleovorans superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.301048359 7.238218929 33391353 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.456454256 7.597255364 7.838915764 6.821750877 7.380048559 7.818098112 7.841674847 7.511345055 7.302326427 26990001 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.310103375 7.220042988 7.1626248 7.042774662 7.643170236 163668310 glnA Stress Nitrogen limitation Chloroflexus aurantiacus J-10-fl 8.512717421 8.372503973 8.135199644 8.379899611 8.189936986 8.266343199 8.472893051 8.389226854 8.203340878 157918908 akbF Organic Remediation Aromatics BTEX and related aromatics Salinispora arenicola CNS-205 7.334775824 7.689144357 7.937663337 7.646108013 7.98412653 8.114389477 7.788136848 8.008955586 7.93436926 87311367 sigma_24 Stress Sigma factors Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 7.875344044 7.659414413 7.194708947 7.693139946 7.540861853 7.910628743 7.560604244 7.682661457 7.74302955 109452462 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.188537049 7.082623983 6.836561314 260365432 colonization_factor virulence colonization factor Vibrio parahaemolyticus K5030 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.060820167 7.128632737 7.005490298 6.640215774 7.291584977 24372526 cytochrome Energy process Energy process Shewanella oneidensis MR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella oneidensis; 7.505174485 7.198946027 6.946492175 7.204770328 6.769231118 7.593592682 7.053560733 6.949404775 7.100344543 256028000 hrcA Stress Heat shock Fusobacterium sp. D11 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteria;order:Fusobacteriales;family:Fusobacteriaceae;genus:Fusobacterium; 7.236882859 7.126657349 126660003 sigma_70 Stress Sigma factors Cyanothece sp. CCY0110 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.490821218 7.003341629 119951100 pstA Stress Phosphate limitation Arthrobacter aurescens TC1 7.192241832 6.850457158 7.044509758 6.799035919 7.695128669 6.943264371 7.03950299 227528364 pstC Stress Phosphate limitation Lactobacillus ruminis ATCC 25644 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus ruminis; 7.23709235 7.359025926 134292682 CopA Metal Resistance Copper Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 7.417682217 7.05525578 7.346553302 7.116554138 7.335705601 7.017599948 7.248265382 7.02124572 2627154 xylF Organic Remediation Aromatics BTEX and related aromatics Acinetobacter sp. YAA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 7.649574396 7.461296225 7.62661602 7.409268529 7.665699908 7.962962327 7.473675162 7.335160741 7.549108406 85687975 pcc Carbon cycling Carbon fixation Erythrobacter sp. NAP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 8.017916627 8.055985354 7.816657952 7.612575132 8.000926406 7.987230792 7.842288066 7.718363373 7.816264844 219666758 rd Organic Remediation Chlorinated solvents Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 7.541877725 7.305156345 7.1311269 6.609661596 7.275188854 6.604949137 7.601679598 238705164 sigma_70 Stress Sigma factors Yersinia ruckeri ATCC 29473 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia ruckeri; 7.434716442 6.694757398 7.185922559 221739167 nmoA Organic Remediation Aromatics Nitoaromatics Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 7.46238093 7.310573918 7.05409689 7.691632043 219952183 glnA Stress Nitrogen limitation Methylobacterium nodulans ORS 2060 7.760465008 7.406701778 8.391834143 7.823686988 7.685852017 7.222081546 7.620460332 28864361 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.688520351 7.761362841 7.625656815 7.377629921 7.519842586 116121957 hrcA Stress Heat shock Leptospira borgpetersenii serovar Hardjo-bovis L550 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira borgpetersenii; 7.419117677 7.521923482 7.267179979 7.217028799 7.173303926 74484323 xylF Organic Remediation Aromatics BTEX and related aromatics Pseudomonas putida 7.785612361 7.690091413 7.839904573 7.649442851 7.390244598 7.691187667 7.784046747 7.55872218 118028826 phtA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.007966964 7.67580765 8.492999176 8.363176737 7.967976212 8.099538918 8.283208525 7.979463568 154352009 glnR Stress Nitrogen limitation Bacillus amyloliquefaciens FZB42 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 7.135418853 7.312096405 218241555 catechol_B Organic Remediation Aromatics Other aromatics Alicyclobacillus acidocaldarius LAA1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 7.999272466 7.433715659 7.435687792 7.307459973 60476020 rubisco Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.520093847 7.683053902 7.511443756 1100896 ureC Nitrogen Ammonification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium damselae; 7.317739762 7.273476868 7.137225499 6.915944065 7.669795668 87331842 arhA Organic Remediation Aromatics Heterocyclic aromatics uncultured bacterium superkingdom:Bacteria; 7.415975704 7.487134097 7.58757595 7.64072037 7.235700372 7.518064335 7.586694584 7.739575798 7.698284844 119478517 AceA Carbon cycling Carbon degradation others marine gamma proteobacterium HTCC2143 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.690267811 7.440543474 7.499148646 7.051948174 7.289732731 7.627355993 7.178773019 7.397302194 7.234831605 157083884 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 7.359407084 7.151487278 7.363280415 6.874979733 7.150295064 7.391109535 7.450251634 6.936006687 222480495 CadA Metal Resistance Cadmium Halorubrum lacusprofundi ATCC 49239 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 8.060610744 7.091044878 7.948453109 7.930389143 7.813739821 256829841 AceB Carbon cycling Carbon degradation others Desulfomicrobium baculatum DSM 4028 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfomicrobiaceae;genus:Desulfomicrobium;species:Desulfomicrobium baculatum; 7.973232529 7.968548004 7.548591184 7.18807791 8.01742477 8.103222957 7.628167989 7.599035697 7.858343222 227197373 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium striatum; 7.375173472 7.304241894 6.900527171 6.86744188 7.433498026 206676743 dsrB Sulphur sulfite reductase Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.808188216 7.652105167 7.206758807 6.989116077 7.579696138 7.990656927 7.358471443 7.18027127 7.443437908 254484240 pstB Stress Phosphate limitation Marinitoga piezophila KA3 6.981754016 7.115011202 7.08226554 56388387 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Anaplasma marginale str. St. Maries superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales;family:Anaplasmataceae;genus:Anaplasma;species:Anaplasma marginale; 7.647621257 7.393785623 7.420425235 6.874344979 7.770971197 7.60214096 7.374370081 7.20262807 7.519038438 88818913 ahpC Stress Oxygen stress Pseudoalteromonas tunicata D2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas tunicata; 7.376557946 7.541768258 7.138911574 7.552391123 7.132821313 7.36633784 14276189 dsrB Sulphur sulfite reductase Desulfosarcina variabilis superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfosarcina; 7.819876445 8.142391258 7.941875033 7.815774566 8.380095529 8.102382761 8.276379713 8.431773626 8.34094222 225168092 phoB Stress Phosphate limitation Dethiobacter alkaliphilus AHT 1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Syntrophomonadaceae;genus:Dethiobacter;species:Dethiobacter alkaliphilus; 7.247807653 7.440762341 7.202748179 7.171553157 6.978888128 7.662057008 7.331767905 7.181655548 7.577046321 150837201 CopA Metal Resistance Copper Marinomonas sp. MWYL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 7.78776525 8.065097532 7.741428101 7.520307491 7.792201074 7.394862418 7.89540241 7.613082482 7.51868838 227465804 srt virulence surface protein Gardnerella vaginalis ATCC 14019 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Gardnerella;species:Gardnerella vaginalis; 7.635705536 7.548677321 7.679660892 7.571946817 7.922299164 7.785634056 7.589138251 7.952782976 56809529 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 6.939761797 6.592907014 7.073370074 32397293 Mex Antibiotic resistance transporter Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 7.685041715 7.291155711 7.161630312 7.235651623 7.247160209 37498962 endoglucanase Carbon cycling Carbon degradation Cellulose Bacillus pumilus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.874055375 7.492888453 8.091034687 7.593703369 7.818136148 169276 mnp Carbon cycling Carbon degradation Lignin Phanerochaete chrysosporium 8.120715248 7.896732134 7.916488245 7.599484774 8.258169288 7.90387882 7.881622522 8.016868328 7.968524214 209537843 nmoA Organic Remediation Aromatics Nitoaromatics Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.26186261 7.177186072 7.301115048 6.763871825 7.339047516 95110579 iro virulence Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 7.037130536 7.061692736 7.32325997 7.150856213 7.902468022 6.994566932 7.043425771 7.372263394 66046097 silC Metal Resistance Silver Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 7.499174357 7.501469005 7.190355483 7.139231378 7.584882718 7.974539526 7.580603426 7.620256316 7.571708411 213014724 catB Organic Remediation Aromatics BTEX and related aromatics Thermotogales bacterium TBF 19.5.1 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Kosmotoga;species:Kosmotoga olearia; 7.718900388 7.495180227 7.638305897 7.313406248 7.493583716 7.792424991 7.540298235 7.161365446 7.362960241 139002684 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.541539529 7.671743189 268318160 sigma_24 Stress Sigma factors Rhodothermus marinus DSM 4252 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 7.320868147 7.470568929 7.529489305 7.685003696 7.100348875 7.697410397 7.408993165 7.755230708 8.080935439 172040351 sigma_24 Stress Sigma factors Corynebacterium urealyticum DSM 7109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium urealyticum; 7.722703218 7.821154569 7.810657076 7.681681437 7.76891017 7.79244658 7.717312343 7.737238803 7.605502388 270284101 srt virulence surface protein Bifidobacterium gallicum DSM 20093 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 7.43338215 7.345148437 7.464645038 7.016307289 7.372379632 7.656882872 7.596722948 7.656678938 7.640602664 551309 mauAB Organic Remediation Herbicides related compound superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 7.751744646 7.616076088 7.510581194 7.477156519 7.703780597 7.935678285 7.498550931 7.64754558 7.468462145 114195769 CadA Metal Resistance Cadmium Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.820554338 7.5734039 7.596033065 7.368274412 7.120833724 167076159 PobA Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium leguminosarum bv. trifolii WSM1325 7.573356017 7.398644918 7.647813626 7.337583287 7.633151395 8.336197845 7.851747463 7.955833461 7.82052719 225194134 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.198019032 7.425263189 7.133659382 6.864756242 7.166558043 7.628597698 7.397173502 7.424480576 169125722 nplT Carbon cycling Carbon degradation Starch uncultured bacterium superkingdom:Bacteria; 7.096072431 7.400550691 7.262852724 145576104 phn Organic Remediation Herbicides related compound Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 7.63729638 7.318929996 7.307602288 7.04233278 7.487741812 7.809505487 7.669359095 7.498251107 7.556645165 110835044 mer Metal Resistance Mercury Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 7.763211951 7.552952723 8.144237954 8.512718053 8.055910269 7.871200989 8.094561353 194364165 Arylest Organic Remediation Aromatics Other aromatics Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 7.554599283 7.978961421 6.989436518 7.520868488 7.612786912 7.921260414 186464509 SMR_antibiotics Antibiotic resistance transporter Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 7.526166967 7.574783091 238799188 AceB Carbon cycling Carbon degradation others Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 7.153628603 7.167504702 148241530 sigma_70 Stress Sigma factors Synechococcus sp. RCC307 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.446521686 7.612016605 7.391727353 6.657240295 7.349532352 7.336816439 7.164210646 7.427937178 77378573 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.336885366 7.435953495 7.37330127 6.982563622 7.086491433 7.969663634 7.582097797 7.174388024 157962515 cytochrome Energy process Energy process Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 6.901944155 7.01255465 115255811 TerC Metal Resistance Tellurium Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.46193776 7.63078043 7.419525066 7.860477382 7.714726632 7.606504287 154310969 amyA Carbon cycling Carbon degradation Starch Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 7.266353826 7.160049975 7.336488587 73668762 phoA Stress Phosphate limitation Methanosarcina barkeri str. Fusaro superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina barkeri; 7.000961864 6.639748048 6.97812143 39934877 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Rhodopseudomonas palustris CGA009 7.772111338 7.479095728 7.471860175 7.820088635 7.883305759 7.532778595 7.649398514 7.692011915 7.60879496 88707079 czcA Metal Resistance "Cadmium,Cobalt,Zinc" gamma proteobacterium KT 71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 7.83827466 7.834419929 7.849301093 7.518225256 8.122903924 7.973069962 7.632103107 7.908530141 222475903 mer Metal Resistance Mercury Halorubrum lacusprofundi ATCC 49239 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 7.899620397 7.87443837 7.831989486 7.135721732 7.766294565 7.843645384 7.553820958 7.623655458 7.372046305 119868170 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium sp. KMS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.371705582 8.490810142 8.543913244 7.939483916 8.613077106 8.451168 8.628323475 7.800637472 77973424 amyA Carbon cycling Carbon degradation Starch Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 7.061867808 7.315274016 7.318014794 7.113512028 7.160372854 7.672795395 7.256408578 7.322593338 7.745441599 146324840 pectinase Carbon cycling Carbon degradation Pectin Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 7.33388486 7.284127168 7.45785881 7.079734886 7.135570092 7.349640248 7.236096805 7.475434449 15159530 cap virulence capsule Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.36125828 7.136051978 119774921 CopA Metal Resistance Copper Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 7.313950824 7.072621003 7.140118117 7.121589974 6.81613235 227963401 SMR_antibiotics Antibiotic resistance transporter Tsukamurella paurometabola DSM 20162 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 7.237301273 7.209710574 7.32705019 7.159128858 7.367304646 7.749377972 7.5987727 7.094796356 6164963 xylanase Carbon cycling Carbon degradation Hemicellulose Streptomyces thermocyaneoviolaceus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7.375512963 7.832128834 7.923464958 8.105588981 7.968032102 8.231365097 7.606918188 7.779957405 7.86369852 86146958 CadA Metal Resistance Cadmium Vibrio sp. MED222 8.050007676 6.825201185 7.442040327 7.34332385 7.267277706 7.351248679 7.372037834 7.49465818 169761868 gyrB other category gyrB Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.982279768 8.116225316 8.201679954 7.962518221 8.293460608 7.994802922 8.128397231 7.591105629 213987528 PobA Organic Remediation Aromatics Aromatic carboxylic acid Acinetobacter baumannii AB307-0294 7.481444791 7.450559785 7.181010484 6.840496142 7.623045511 7.071998035 6.875270429 7.359133131 261821990 nrfA Nitrogen Dissimilatory N reduction Pectobacterium wasabiae WPP163 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium wasabiae; 7.766680416 8.037927977 7.794716524 7.776139801 7.653852386 7.591031359 7.742720172 7.607767704 145217912 linB Organic Remediation Pesticides related compound Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 7.517233112 7.645711187 7.797583094 7.563357705 7.336995138 7.98933047 113900330 nmoA Organic Remediation Aromatics Nitoaromatics Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 7.422049329 7.32462695 7.9024329 7.045099613 7.963949512 158523494 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.266083231 7.480491372 145574410 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 6.965801706 7.077380574 7.173369849 194292772 nirS Nitrogen Denitrification Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 7.545243858 7.794110961 7.577025685 7.773296235 7.711090845 7.604428075 7.659075283 7.582960023 223585933 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.898637237 7.216330332 6.698424741 6.90067658 7.495938778 7.06518187 7.312283977 162286737 benD Organic Remediation Aromatics Aromatic carboxylic acid Acinetobacter baumannii ATCC 17978 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 7.002623408 6.921254253 7.000363799 123229694 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.482722823 7.363026415 7.899504277 8.055771131 7.259756297 8.003904692 7.326020615 7.31371383 7.381391062 134143021 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 7.33418749 6.996453375 222110631 sigma_24 Stress Sigma factors Diaphorobacter sp. TPSY superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax ebreus; 7.69254205 7.493484923 7.213079082 6.967662817 7.168312898 7.64904165 7.218907145 7.18607072 93452595 atzA Organic Remediation Herbicides related compound delta proteobacterium MLMS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 7.143489755 7.056842453 7.769901321 7.693444599 7.388275551 7.492607214 7.375956067 7.206850686 71556061 pstS Stress Phosphate limitation Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 7.546015167 7.57323399 7.662246197 7.218041714 7.778703787 7.81311489 7.671365328 7.849753102 7.752402027 184194675 silC Metal Resistance Silver Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 9.419194309 9.590930488 9.423873384 9.422124557 9.760673903 9.654885927 9.72505058 9.697893072 9.686106369 209525459 ppx Phosphorus Phosphorus utilization Arthrospira maxima CS-328 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira maxima; 7.460088502 7.443621279 7.422116587 7.408398591 6.990787044 7.747862018 7.256316078 7.24313887 7.292379126 119474701 mdlC Organic Remediation Aromatics Aromatic carboxylic acid marine gamma proteobacterium HTCC2143 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.274663072 8.087598142 8.184595623 7.591002246 8.30045942 8.321929303 8.073109428 8.532047647 7.90027944 126664476 ahpC Stress Oxygen stress Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 7.464503541 7.517175434 7.534256952 7.293299427 7.74677369 7.889146373 7.817514005 7.422567 7.709753552 256389677 pstB Stress Phosphate limitation Catenulispora acidiphila DSM 44928 10.62319422 10.57566589 10.25034178 146342811 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.156210439 8.150951978 8.156829756 8.061880938 8.33553077 8.21671606 8.428635101 8.467648101 8.409774116 16126632 vanA Carbon cycling Carbon degradation Others Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 7.95931854 7.703967464 7.77771057 7.777802036 7.422419945 8.150780448 7.262059047 7.600294547 110635929 gyrB other category gyrB Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 7.194149597 7.643924514 7.806452913 7.816098663 7.405167273 8.094011688 7.567354184 7.322299356 7.974515536 147919770 nifH Nitrogen Nitrogen fixation uncultured methanogenic archaeon RC-I superkingdom:Archaea;phylum:Euryarchaeota; 7.841291835 7.556308109 7.392934591 7.412359276 7.036542672 7.86219975 7.468297978 7.360935276 73542041 ChrA Metal Resistance Chromium Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.794012159 7.543074405 7.219805784 7.226750886 7.038255398 7.242345689 7.608079714 26990766 pcc Carbon cycling Carbon fixation Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.663118209 7.330380281 7.388639941 7.748404067 7.647171177 7.538480088 7.323034148 7.468150375 78485420 hly virulence hemolysin Thiomicrospira crunogena XCL-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Thiomicrospira;species:Thiomicrospira crunogena; 7.491414173 7.541319522 7.593932366 7.255938544 7.748414154 7.081636638 7.276878136 7.6298076 222081543 grpE Stress Heat shock Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.232950398 8.047559333 7.949987215 7.708640999 7.876926088 7.927532952 7.844508411 7.804373417 7.61941818 38049243 MFS_antibiotic Antibiotic resistance transporter Enterococcus faecium superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus; 7.082417396 6.896389767 6.881324309 6.624463658 7.473852058 238499127 ara_fungi Carbon cycling Carbon degradation Hemicellulose Aspergillus flavus NRRL3357 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus flavus; 7.673378936 7.455467201 7.128261884 6.87004989 6.80445665 7.712815632 86142355 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Flavobacterium sp. MED217 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Leeuwenhoekiella;species:Leeuwenhoekiella blandensis; 7.364163281 7.260325 7.55160465 7.800924508 7.253249668 7.127489207 7.088287638 7.203343397 163811666 ahpC Stress Oxygen stress Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 6.870569899 7.200012851 114778935 CopA Metal Resistance Copper Mariprofundus ferrooxydans PV-1 7.585124579 7.605118018 7.416597855 7.279950974 7.840599149 7.780387211 7.54686242 7.825842356 7.758746841 47496802 akbF Organic Remediation Aromatics BTEX and related aromatics Pseudomonas putida 7.755609357 7.496149763 7.660993579 7.570751585 7.965274384 7.762797437 7.912373187 7.649394307 7.825436265 13751049 PceA Organic Remediation Others Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 7.424941548 7.254305809 7.222100594 7.585373238 7.251123285 7.035378703 119952628 ArsC Metal Resistance Arsenic Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 7.151369746 7.382533947 7.223105078 7.363396458 7.066901557 7.040051664 7.17186104 84386816 AceB Carbon cycling Carbon degradation others Vibrio splendidus 12B01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 6.93634773 7.172200624 7.327894003 6.95737792 7.679181571 7.019785879 6.930115981 7.27890062 150396765 catB Organic Remediation Aromatics BTEX and related aromatics Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 8.271527585 7.901519129 7.661364591 7.348792527 8.034981286 7.875805692 7.846113333 7.818919071 7.907378511 118470179 BADH Organic Remediation Aromatics Other aromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 7.795475037 7.856623518 8.167563628 7.446216 7.779355331 7.884781872 8.204113303 8.128430058 8.600291351 163845994 sigma_24 Stress Sigma factors Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 7.224845369 7.448006975 7.564718666 7.806189623 7.450469588 7.658830266 7.327885259 7.452411578 7.22952965 115259174 atzA Organic Remediation Herbicides related compound Rhizobium leguminosarum bv. viciae 3841 7.400349722 7.740053604 7.682175288 6.884166409 7.502485668 7.543104541 7.440034305 7.749640203 116251752 nasA Nitrogen Assimilatory N reduction Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.906812133 8.065481733 8.036543089 7.793458777 8.313156825 7.965287842 8.106468947 8.001654431 7.922538126 119964465 hly virulence hemolysin Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 7.921876636 7.958231728 7.655615087 7.945154818 7.888712674 8.099355098 7.914182162 7.552312853 7.765917348 160340732 pbrA Metal Resistance Lead Burkholderia multivorans ATCC 17616 8.301275993 8.2241961 8.069711458 8.330669457 8.808078957 8.756884451 8.578362158 8.756120712 118470171 iro virulence Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 7.170364813 7.087549672 7.572647453 7.585033286 7.057450642 7.740688565 151302168 AprA Sulphur adenylylsulfate reductase Desulfovibrio sp. La1H2 7.574733789 7.472331873 6.953501515 7.137729146 83576241 ArsC Metal Resistance Arsenic Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 7.860701427 7.795873515 7.54478348 7.733501711 8.237524119 7.933598544 8.004980254 8.022116031 114331941 katE Stress Oxygen stress Nitrosomonas eutropha C91 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas eutropha; 7.193776941 6.915999097 7.454741844 7.252739392 7.00975566 7.588431504 255325135 sigma_70 Stress Sigma factors Corynebacterium tuberculostearicum SK141 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium tuberculostearicum; 7.284547842 7.916696279 7.623038935 7.377451514 7.509096125 7.597119533 7.35577353 7.667034677 192764356 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.579941295 7.73966167 7.880827697 7.993750707 7.915233222 8.115629659 8.090543661 8.161387084 8.095512293 163743455 oxyR Stress Oxygen stress Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 7.502188332 8.104377329 8.065479609 7.738062829 7.905800079 8.099336272 7.883106677 8.14151332 184192111 phoB Stress Phosphate limitation Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.440643545 6.946928807 7.088484164 7.209115762 6.918043248 7.459858884 73539622 nagI Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.58864664 7.223318757 7.414752084 7.560868081 118438679 ChrA Metal Resistance Chromium Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 7.936787121 7.977388753 7.629665032 7.646690465 7.996196716 7.632240774 7.940926136 7.861978597 184203007 pcaG Organic Remediation Aromatics Other aromatics bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 7.928060573 8.030119056 8.225957084 7.838532872 7.536633498 7.474743523 7.62502492 27382955 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.547812764 7.458324333 7.431076965 7.567193246 7.512372758 7.522008829 7.441271129 108764385 TerC Metal Resistance Tellurium Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 7.2224296 7.004561477 59044729 pectinase Carbon cycling Carbon degradation Pectin uncultured bacterium superkingdom:Bacteria; 7.614096399 7.293083155 7.130233007 7.470439698 7.218848935 7.905774264 117959701 phenol_oxidase Carbon cycling Carbon degradation Lignin Ganoderma fornicatum superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Ganodermataceae;genus:Ganoderma; 8.147744446 7.946254258 7.914973356 7.308004339 7.784226687 7.953185759 7.795784286 7.857956548 7.407244225 209899384 cellobiase Carbon cycling Carbon degradation Cellulose Enterobacter cancerogenus ATCC 35316 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 7.173900085 7.035704438 7.120656114 6.967371813 7.193706787 78190869 clpC Stress Protein stress Bifidobacterium ruminantium 8.342270611 8.504125637 8.5586431 8.24506701 8.964202822 8.468541728 8.763976816 8.5374463 8.671187126 219862742 B_lactamase_C Antibiotic resistance Beta-lactamases Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.572030922 7.768595417 8.218377295 8.01116943 8.700510139 8.376850288 8.440386746 8.085534523 239579683 nrfA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.322985646 7.332701864 7.167984069 7.009376565 7.112867503 7.532574602 171090709 gdh Nitrogen Ammonification Geobacillus sp. WCH70 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.998995678 7.741096694 7.608742341 7.663516512 7.517006547 7.722083851 7.541880521 7.675363681 116743218 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.474952712 7.545803106 7.470341036 7.193385827 7.398837877 7.757565583 7.335060583 7.573411416 7.645471072 119898734 pheA Organic Remediation Aromatics Other aromatics Azoarcus sp. BH72 7.91214871 7.780544277 7.55345212 7.429452371 7.694070309 8.039136047 7.735331499 7.822667519 7.753771453 237715094 nrfA Nitrogen Dissimilatory N reduction Bacteroides sp. D1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 7.756513002 7.645842009 7.614814559 7.524590643 7.399188373 7.92570937 7.957911473 7.955419862 7.841711193 225868209 pstB Stress Phosphate limitation Streptococcus equi subsp. zooepidemicus 7.138601744 6.881520687 257780573 glnA Stress Nitrogen limitation Desulfotomaculum acetoxidans DSM 771 7.638232842 7.803091112 7.637840327 7.586496501 7.73717384 7.581836772 7.681942154 150014788 rubisco Carbon cycling Carbon fixation uncultured gamma proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.710696889 7.541012743 7.783811313 7.121551345 7.056136943 7.825692042 7.105197454 7.231623922 6.966260014 77378703 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.897352569 8.12641818 8.133439907 7.797914488 8.432168425 7.934754571 8.310333811 8.198337525 8.253309472 187928796 CopA Metal Resistance Copper Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 7.977708633 7.661751975 7.222321576 7.653756733 7.601930329 83952105 obgE Stress Radiation stress Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 7.001090057 7.468840439 189423690 pstB Stress Phosphate limitation Geobacter lovleyi SZ 7.525296004 7.53345841 7.390028301 7.008633951 7.344498769 227855875 gdh Nitrogen Ammonification Lactobacillus plantarum subsp. plantarum ATCC 14917 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus plantarum; 7.82910595 7.637832063 7.409474091 7.400297355 7.450633685 7.802857508 7.260963382 7.333504846 7.596967353 270513714 sigma_24 Stress Sigma factors Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 7.250031501 7.317170209 7.156895172 13471962 katE Stress Oxygen stress Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 6.777969737 6.887823819 7.068303186 6.793553705 6.683239856 262298743 AceA Carbon cycling Carbon degradation others Acinetobacter radioresistens SH164 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter radioresistens; 7.528558605 7.174717309 7.28263166 7.467390372 7.06201045 7.282309435 7.228039074 91978293 phn Organic Remediation Herbicides related compound Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.402341362 7.406978642 7.844093152 8.023522444 7.603185141 8.123664875 7.422591885 7.668614047 7.855398463 254420336 narI Stress Oxygen limitation Brevundimonas sp. BAL3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas; 7.909882333 7.8223992 7.625191999 7.605044606 8.34191862 7.961554447 7.900554415 7.835053758 8.212977312 87307584 linB Organic Remediation Pesticides related compound Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 7.977149638 7.825068784 7.700081377 7.7375352 8.162583072 7.99886072 8.016415722 7.817683629 8.017534682 93006610 atzB Organic Remediation Herbicides related compound Psychrobacter cryohalolentis K5 7.023496261 7.596327323 7.579235009 7.053697902 7.47857028 7.645772595 6.914131711 7.377376246 260862328 obgE Stress Radiation stress Selenomonas sputigena ATCC 35185 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sputigena; 7.27866855 7.430158492 7.505266943 7.423641505 7.31548824 7.456431072 7.705062667 7.495218375 167629410 BchY other category chlorophyllide reductase Heliobacterium modesticaldum Ice1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Heliobacteriaceae;genus:Heliobacterium;species:Heliobacterium modesticaldum; 7.685975554 8.108240361 7.683777566 7.05498482 7.583155486 7.38334268 7.365205204 7.458652275 7.750545802 154244158 pstB Stress Phosphate limitation Xanthobacter autotrophicus Py2 8.535051257 8.606818115 8.359284565 257146939 cydB Stress Oxygen limitation Lactobacillus rhamnosus GG superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 7.585027311 7.587543508 7.556483426 7.316693402 7.957039997 7.910864246 7.828908836 7.919841965 7.88243458 256398542 srt virulence surface protein Anaerococcus vaginalis ATCC 51170 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Anaerococcus;species:Anaerococcus vaginalis; 7.078354484 7.325172823 7.247752852 7.134123755 7.033241466 151561416 ArsC Metal Resistance Arsenic Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 7.928758856 7.698833671 7.50778991 7.45883327 7.300386022 7.575774389 7.261231097 7.282125806 7.275137216 1498175 hydrogenase Energy process Energy process Pseudomonas hydrogenovora superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.555016516 7.362763654 7.372621786 7.241050081 7.129784276 7.764063504 7.358683993 7.117875873 7.235048827 217979575 iro virulence Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 7.812188408 7.931605708 7.555803227 7.378546249 7.236014171 7.587201671 7.674624505 7.640399776 158334948 rubisco Carbon cycling Carbon fixation Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;genus:Acaryochloris;species:Acaryochloris marina; 7.467821614 7.477137043 7.196233663 7.219776546 7.45668997 206591554 silC Metal Resistance Silver Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 8.538159072 8.442692957 8.185046234 8.460625078 8.412699074 8.253373904 8.439711435 8.124829068 8.186059805 262171059 exochitinase Carbon cycling Carbon degradation Chitin Vibrio mimicus MB-451 7.644277887 8.108396841 7.874864389 7.325569322 7.736706506 7.62975513 7.593418438 7.999885786 10580387 endochitinase Carbon cycling Carbon degradation Chitin Halobacterium sp. NRC-1 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halobacterium;species:Halobacterium salinarum; 7.308846383 7.029163976 7.154338321 7.071818483 7.145090511 7.274419389 7.179399757 6.951409213 55981555 gyrB other category gyrB Thermus thermophilus HB8 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 7.467945668 7.685876564 7.400856475 7.450066257 7.582449825 52346363 gyrB other category gyrB Bacillus licheniformis DSM 13 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 7.131876924 7.183500179 7.019741407 7.138938615 6.803171754 7.304472738 218548839 nahA Organic Remediation Aromatics Polycyclic aromatics Escherichia fergusonii ATCC 35469 7.618922722 7.265764908 7.328970435 7.273018223 7.717024582 7.773267623 7.231596193 7.326707351 7.580179193 224964083 vip virulence virulence protein Erwinia pyrifoliae Ep1/96 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia pyrifoliae; 7.38600106 7.337519093 7.470096469 7.067224695 7.25979035 7.455764878 7.172950213 6.910092647 167750934 sigma_70 Stress Sigma factors Eubacterium siraeum DSM 15702 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium siraeum; 7.461394174 7.117038999 7.465251518 6.701847997 7.150422684 7.589077906 7.288377693 7.024587148 7.458941669 171696056 glx Carbon cycling Carbon degradation Lignin Podospora anserina superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 7.538626276 7.728469719 7.305494835 7.458625057 8.019701616 7.798525728 7.689139023 7.360210129 7.92867679 145303681 linB Organic Remediation Pesticides related compound Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 7.004362669 7.185469975 7.175224413 7.015601699 6.737874358 7.373903969 260769466 amyA Carbon cycling Carbon degradation Starch Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 7.145072901 7.084138021 7.189158634 6.920352219 7.48273071 88702128 merB Metal Resistance Mercury Congregibacter litoralis KT71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 7.358266776 7.284494084 7.022132303 222109012 nmoA Organic Remediation Aromatics Nitoaromatics Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.09771755 7.019980894 7.027318577 169242064 mer Metal Resistance Mercury Mycobacterium abscessus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.935783686 8.128410703 7.970170545 7.784780421 8.270120189 7.746678979 7.803928204 8.01921077 8.028025079 85829653 obgE Stress Radiation stress Leeuwenhoekiella blandensis MED217 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Leeuwenhoekiella;species:Leeuwenhoekiella blandensis; 7.440517675 7.616155502 7.484923517 7.300804636 7.624771139 28897733 CopA Metal Resistance Copper Vibrio parahaemolyticus RIMD 2210633 7.055433837 7.107754647 6.887842446 7.089910068 7.01469771 7.325537307 6.873861501 6.943539019 7.427035112 61394085 holin_type1 Bacteria phage LYSIS Enterobacteria phage PR772 family:Tectiviridae;genus:Tectivirus;species:Enterobacteria phage PRD1; 7.773285436 7.60426782 7.825413382 7.553099265 7.682886942 7.947995751 7.71950521 7.614389651 7.653421363 151358495 gyrB other category gyrB Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 8.184422432 8.453077087 8.41939877 8.461910528 8.52140205 8.53366265 8.28271706 8.187300031 8.405289783 69249347 hrcA Stress Heat shock Enterococcus faecium DO superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus faecium; 7.357905599 7.308057045 7.7860267 58422745 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.196791443 7.16453761 7.022817087 7.15883245 160361132 akbF Organic Remediation Aromatics BTEX and related aromatics Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.995149531 7.586843995 7.561785585 7.698771917 7.762740366 7.877765332 7.585259487 7.671393373 7.793372815 110833027 phoB Stress Phosphate limitation Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 7.497266684 7.369065131 7.723629343 7.21709439 7.649942223 7.567620923 7.646690629 7.380279936 7.354470392 114705959 pcaG Organic Remediation Aromatics Other aromatics Fulvimarina pelagi HTCC2506 7.477307686 7.767335232 7.954326238 7.688615301 7.671847803 8.074644455 94497023 ArsC Metal Resistance Arsenic Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.083176835 8.17598639 8.004844701 8.096371254 8.596794899 8.39663356 8.299532863 8.163267728 53757661 catB Organic Remediation Aromatics BTEX and related aromatics Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 7.921045409 7.634211572 7.447519198 6.97021125 7.718578611 7.755649083 7.602514808 7.668946729 7.899297981 50542742 rubisco Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.557398989 6.967116716 7.715290796 7.526202447 6.804590831 7.913295034 229604938 DNA_polymerase_type_I Bacteria phage REPLICATION Vibrio phage VP93 order:Caudovirales;family:Podoviridae;genus:phiKMV-like viruses; 7.592153438 7.320880993 7.328887636 7.076959086 7.099238932 167348342 silC Metal Resistance Silver Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.358943751 8.002909819 8.084527765 7.895899974 8.459099885 8.437757789 8.275210388 8.331719253 124115597 ChrA Metal Resistance Chromium Vibrio cholerae 1587 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 7.221791766 7.063998134 6.89551166 7.61382471 7.125814109 6.777686333 63146072 phenol_oxidase Carbon cycling Carbon degradation Lignin Hortaea acidophila superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Dothideales;genus:Hortaea; 7.360168525 8.115079866 8.101502524 7.73798412 7.987604539 7.602145988 8.006713181 7.728285295 6466835 phenol_oxidase Carbon cycling Carbon degradation Lignin Pycnoporus cinnabarinus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Pycnoporus; 7.942107284 7.96320294 7.976748338 7.201046002 7.70342748 7.709630363 7.573556973 7.735810647 8.129962037 91708831 phoB Stress Phosphate limitation Methylobacillus flagellatus KT superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 7.213858388 7.161895345 7.387507836 7.140992323 7.105214932 7.599393934 7.410579749 7.226475879 7.474463843 260770758 glnA Stress Nitrogen limitation Vibrio furnissii CIP 102972 6.916100021 6.870497467 159892289 SMR_antibiotics Antibiotic resistance transporter Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 8.017448843 7.866000103 7.853664188 7.979566698 8.425342789 8.524461389 8.029268278 7.390919297 8.112789833 144944416 bco Organic Remediation Aromatics Aromatic carboxylic acid Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 8.164088885 8.022901762 7.876805489 7.991422028 8.003761627 8.269165947 7.960251521 7.937264674 126719913 sigma_32 Stress Sigma factors Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.545266856 7.446229266 7.91022601 7.502431151 7.483168814 7.492175622 7.693506501 7.50726198 193088949 Arylest Organic Remediation Aromatics Other aromatics Chloroherpeton thalassium ATCC 35110 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chloroherpeton;species:Chloroherpeton thalassium; 8.130274077 7.535939988 7.476098775 7.420828832 7.580692803 7.099105732 7.355760858 11071715 mer Metal Resistance Mercury Bacillus macroides superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.565710768 7.423689394 7.555013561 7.189018719 7.604912926 7.457421738 7.292160541 146278836 cytochrome Energy process Energy process Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 7.234571174 7.105309684 7.472813435 6.908716511 7.236211744 7.658457059 7.41803184 7.493672627 7.582098859 187715400 ophC Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.166338995 7.414964319 7.809300459 7.349826184 7.060938629 7.510447853 7.681457553 7.692176962 54024495 ureC Nitrogen Ammonification Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 9.606773713 9.52353047 9.592037221 261250201 obgE Stress Radiation stress Vibrio orientalis CIP 102891 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 7.8905234 7.57974693 7.493812759 7.319774908 7.785535588 220029050 T4_recomb_endonuclease Bacteria phage REPLICATION Enterobacteria phage JSE order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.250057824 7.740306805 192897530 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 8.14018864 7.91837945 7.7018014 6.935712679 8.046342708 7.813756963 7.561472211 7.652766664 170731211 ppx Phosphorus Phosphorus utilization Xylella fastidiosa M12 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xylella;species:Xylella fastidiosa; 7.545415235 7.59541375 7.375023955 7.727428787 7.849642825 7.552983866 7.443621673 7.486202104 113728498 gyrB other category gyrB Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 7.99197628 7.657640756 7.301887989 164614035 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.355416623 7.381977086 6.986513155 24575104 dehH Organic Remediation Chlorinated solvents Streptomyces globisporus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7.297230375 7.394258164 7.676821927 7.275259436 7.621474795 7.744373832 7.311112358 7.49732598 21646850 pstB Stress Phosphate limitation Chlorobium tepidum TLS 7.116524537 6.760213608 7.2724904 165876774 gyrB other category gyrB Actinobacillus pleuropneumoniae serovar 3 str. JL03 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus pleuropneumoniae; 7.622913738 7.675735846 7.489816809 7.486454502 7.574755822 7.876020432 7.294417609 7.391447619 7.339273037 iegcoxL13 CODH Carbon cycling Carbon fixation 7.729499325 7.602357689 7.645992579 7.365952644 7.680401211 7.754965422 7.508721222 7.481265812 7.594533322 219548675 cda Carbon cycling Carbon degradation Starch Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.442729907 7.601755136 7.853408792 7.606370261 7.46933225 8.063461006 7.479812858 7.429161303 7.575539083 158306861 pstB Stress Phosphate limitation Acaryochloris marina MBIC11017 7.226417164 7.231605967 7.309008375 7.504380834 7.405005729 7.710421419 254523597 ppk Phosphorus Phosphorus utilization Stenotrophomonas sp. SKA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 7.992830723 8.092468983 7.76672768 7.846031217 7.988905317 8.018214848 8.030602481 7.968373474 87281008 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.89648751 7.931379775 7.911292413 8.052494275 7.611048752 7.714403126 7.456585986 225682022 endochitinase Carbon cycling Carbon degradation Chitin Paracoccidioides brasiliensis Pb03 7.210222676 6.83045606 6.945318053 6.728442227 7.740217872 7.019285162 6.810544061 7.275451212 17231241 atzA Organic Remediation Herbicides related compound Nostoc sp. PCC 7120 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc; 7.232548147 7.258819429 7.363249028 6.63917675 7.465094875 7.156270199 7.289870108 7.212769332 111023819 dmsA Organic Remediation Others Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.020300541 8.191304277 7.859432491 7.398651501 7.935870364 7.572513268 7.870884181 7.887247298 8.108186347 133739463 silC Metal Resistance Silver Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 7.893890341 8.51926119 8.472728907 8.527218393 7.94733888 8.3074218 8.145080584 7.876527744 7.874924004 62468106 bco Organic Remediation Aromatics Aromatic carboxylic acid Acidovorax sp. 2FB7 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 7.644657516 7.749841945 7.361906731 7.084415486 7.728388807 7.498557549 7.396183174 226451926 amoA Nitrogen Nitrification superkingdom:Bacteria; 7.57420847 7.180835848 7.175058923 6.686586821 6.919351983 7.458899815 169793454 narG Nitrogen Denitrification uncultured bacterium 7.495901321 7.369975625 7.39378326 7.253832458 7.145287768 7.650193391 7.515867742 7.575707104 36785525 fnr Stress Oxygen stress Photorhabdus luminescens subsp. laumondii TTO1 7.459249591 7.188216759 7.059490741 7.293842871 109624837 NiR Nitrogen Assimilatory N reduction Haloquadratum walsbyi DSM 16790 7.331028591 7.500561285 7.191884571 6.880015449 6.958544818 7.374987 7.065791648 7.243771184 281404725 sigma_24 Stress Sigma factors Prevotella copri DSM 18205 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella copri; 7.354886212 7.219444094 220714215 nmoA Organic Remediation Aromatics Nitoaromatics Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.575742228 7.402631765 7.354483945 7.482826002 94496003 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.636114696 8.484160052 8.182524417 8.245889706 8.281924436 8.313305612 8.513753022 110817664 alkK Organic Remediation Others Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7.347107797 8.06222785 7.379254373 7.928545918 7.593364765 7.375116982 7.438170321 7.426630798 197119647 TerC Metal Resistance Tellurium Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 7.132539804 7.781519401 7.509605518 7.416097967 7.104552426 19553304 pulA Carbon cycling Carbon degradation Starch Corynebacterium glutamicum ATCC 13032 7.4742641 7.301012487 7.053879918 6.961065709 172057013 amyA Carbon cycling Carbon degradation Starch Exiguobacterium sibiricum 255-15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 7.755833784 7.766936282 7.438237447 7.125888195 7.547445511 7.482559203 7.296265619 7.579337278 90954623 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.858034001 7.643221346 7.483501488 7.124144076 7.605801894 7.455119313 7.568683999 7.549517315 7.521365571 77687829 CODH Carbon cycling Carbon fixation Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.518439101 7.472174786 8.053995791 7.985753192 7.51344228 8.337631167 7.696718671 7.652698637 8.055068835 163752113 AceB Carbon cycling Carbon degradation others Shewanella benthica KT99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella benthica; 7.161856577 7.157404053 57335580 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.999591444 7.703470132 7.589652389 7.635918516 8.036910791 8.227157715 8.037140021 7.589447803 7.770214289 110835276 linB Organic Remediation Pesticides related compound Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 7.41779961 7.469688538 7.53955418 6.917528184 7.485557507 7.354652059 7.484716113 7.486207093 7.276188079 121554384 tomA Organic Remediation Aromatics BTEX and related aromatics Verminephrobacter eiseniae EF01-2 7.921368272 7.813459401 7.880010043 7.639300489 7.992238575 7.989573823 8.309577461 8.21777163 8.106020775 184199816 pimF Organic Remediation Aromatics Aromatic carboxylic acid Kocuria rhizophila DC2201 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 8.200622797 7.660945091 7.979614668 7.703951509 8.471496433 8.199468649 8.160926043 7.89374386 8.067286762 154160049 sigma_24 Stress Sigma factors Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 7.844444495 7.938678574 7.526110007 7.988804068 7.80065197 7.579508526 7.536744867 221155671 pstA Stress Phosphate limitation Thermomicrobium roseum DSM 5159 7.467579618 7.557317954 7.433521981 6.810258761 7.312171572 7.572651309 7.359010342 7.187518496 7.364572685 85694315 ppx Phosphorus Phosphorus utilization Idiomarina baltica OS145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina baltica; 7.312699095 7.45510452 7.742406003 7.990318346 7.445359714 6.942907846 7.368768626 7.440641985 75265436 nirS Nitrogen Denitrification bacterium D1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 8.03915271 7.39312343 7.553246083 7.327437583 8.17534071 94495710 nreB Metal Resistance Nickel Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 7.792504464 7.789152588 7.41402491 7.321248712 7.181653621 7.297787004 7.151953295 76803672 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 7.806663311 7.507916746 7.60828256 7.378439059 6.93906999 7.694824606 83944505 pnbA Organic Remediation Aromatics Nitoaromatics Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 7.490813078 7.417879141 6.777553478 7.500408562 50554753 katE Stress Oxygen stress Yarrowia lipolytica superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Dipodascaceae;genus:Yarrowia;species:Yarrowia lipolytica; 7.859955136 7.898004215 7.913311168 7.572128099 7.4250783 7.323413752 7.58945343 7.618737586 126013316 mcrA Carbon cycling Methane Methane production uncultured archaeon superkingdom:Archaea; 7.67053429 7.768175532 7.608612134 7.477452846 7.227611944 8.091532653 7.541651818 7.531391881 258555208 clpC Stress Protein stress Nakamurella multipartita DSM 44233 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 7.872937659 7.78703997 7.432224909 7.850303204 7.888516254 7.601050601 7.665187226 7.594469712 78224183 cytochrome Energy process Energy process Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 7.091319778 7.15347759 6.92290054 6.97642758 6.783967438 7.249520597 56692272 nifH Nitrogen Nitrogen fixation Heliobacterium gestii superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Heliobacteriaceae;genus:Heliobacterium; 7.379963974 7.212333232 6.972253097 6.883398651 7.436631076 7.393624665 7.324961458 7.294249206 7.602948105 253828060 ppk Phosphorus Phosphorus utilization Helicobacter canadensis MIT 98-5491 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter canadensis; 7.377180146 7.273815481 88703340 trzN Organic Remediation Herbicides related compound gamma proteobacterium KT 71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 7.54931586 7.335421653 7.237662392 7.288274325 259164644 AceA Carbon cycling Carbon degradation others Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 7.632022677 7.503380766 7.342724363 7.310059901 7.825922154 7.625125746 7.587876541 7.737169402 118741547 gyrB other category gyrB Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 7.520661801 7.55109641 7.446105162 7.181327654 7.566163899 7.145469713 7.285586139 7.366531628 229766497 endochitinase Carbon cycling Carbon degradation Chitin Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 8.165967006 8.018702041 7.98893295 8.01078887 8.357032578 8.315085879 8.368662447 8.357434416 8.194768814 109290030 T4_recomb_endonuclease Bacteria phage REPLICATION Aeromonas phage 25 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.267474037 7.063595935 7.248633158 7.123205369 6.661883404 7.455305875 7.043615129 6.988708453 7.302563857 99081811 nhh Organic Remediation Aromatics Nitoaromatics Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8.015192766 8.484758268 8.215699718 7.818749508 7.739319749 8.19879905 7.714561813 7.780501449 7.810732578 157741864 rubisco Carbon cycling Carbon fixation Mycobacterium sp. DSM 3803 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.344912915 7.470444065 7.295398375 6.954977408 7.476516616 7.665051081 7.241313545 7.279988633 7.415406078 145301190 iro virulence Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 7.94006178 7.598053952 7.990225121 8.196144373 7.665125036 225874123 pstA Stress Phosphate limitation Acidobacterium capsulatum ATCC 51196 7.561199964 7.215070703 6.700382345 7.393812096 158328896 ahpC Stress Oxygen stress Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 7.612929106 7.580367402 7.35473899 6.957833257 7.408703317 7.674952766 7.251055724 7.067972679 7.1226626 4154078 MFS_antibiotic Antibiotic resistance transporter Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 7.693179515 7.564692803 7.284380214 7.63627597 7.953289389 7.895393553 7.63699278 7.515727276 90438684 CopA Metal Resistance Copper Vibrio angustum S14 7.587112423 7.574971999 7.382767999 7.32412326 7.225834965 7.731294123 7.567092341 7.350427787 7.582911292 145903060 sigma_70 Stress Sigma factors Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 8.024265376 7.444311508 7.326339907 7.961728455 7.950551769 7.144388823 7.490332149 7.491237504 126249786 dsrA Sulphur sulfite reductase Pyrobaculum calidifontis JCM 11548 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum calidifontis; 7.442932782 7.190086338 6.883000663 7.170438634 115251169 ZntA Metal Resistance Zinc Clostridium difficile 630 7.616898482 7.835091968 7.693581531 7.508347915 7.455726093 7.752666281 7.707181018 7.774926115 188022397 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia stuartii; 7.480424107 7.560334382 6.912750621 6.605833848 7.323093993 119774347 cytochrome Energy process Energy process Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 7.514539198 7.509781025 7.317827917 91684641 rubisco Carbon cycling Carbon fixation Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.946119858 8.14717313 8.174463001 8.236164621 8.301584455 8.315098595 8.147511388 8.296027212 8.272350269 87301497 ZntA Metal Resistance Zinc Synechococcus sp. WH 5701 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.809709846 7.414076743 7.489477536 7.74857127 178464267 katE Stress Oxygen stress Streptomyces griseus subsp. griseus NBRC 13350 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 8.006165291 8.275342733 8.086203452 7.544307764 8.089144655 7.855977609 7.919494136 7.90496301 7.863641516 50295905 phenol_oxidase Carbon cycling Carbon degradation Lignin Auricularia polytricha superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Auriculariales;family:Auriculariaceae;genus:Auricularia; 7.95171501 7.809737118 160357497 ara Carbon cycling Carbon degradation Hemicellulose Bacillus selenitireducens MLS10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus selenitireducens; 7.749007006 7.63873419 7.221470733 7.534575007 7.478305804 7.868596295 7.338303766 7.391817965 7.255503315 262373379 phoB Stress Phosphate limitation Acinetobacter junii SH205 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter junii; 7.254769383 7.370659778 7.20372886 7.065722157 6.910975111 7.575188733 7.185419984 7.151526132 110286429 phoB Stress Phosphate limitation Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 6.922905631 6.830915326 7.232805316 7.172465693 7.229569497 6.893382929 212539808 endoglucanase Carbon cycling Carbon degradation Cellulose Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.783412943 7.93077584 7.652089315 7.620310687 7.695542956 7.78549112 7.846840314 7.298293033 7.346671917 168703455 sigma_24 Stress Sigma factors Gemmata obscuriglobus UQM 2246 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata;species:Gemmata obscuriglobus; 7.923848637 7.909250175 7.940641874 8.202404816 254390239 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 7.689708682 7.732502176 7.237330708 7.651243526 7.412932998 7.820179795 7.756875816 2649615 proV Stress Osmotic stress Archaeoglobus fulgidus DSM 4304 superkingdom:Archaea;phylum:Euryarchaeota;class:Archaeoglobi;order:Archaeoglobales;family:Archaeoglobaceae;genus:Archaeoglobus;species:Archaeoglobus fulgidus; 7.308291114 7.364075114 7.109822897 7.030317855 7.212129205 7.250069542 6.920978294 7.115702457 224595668 clpC Stress Protein stress 'Nostoc azollae' 0708 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena azollae; 6.965980003 7.08577073 7.058926685 7.053775973 6.821724725 7.010518777 7.277547133 104782428 alkK Organic Remediation Others Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 7.03275982 7.043942163 7.444567341 7.292525304 6.878078259 7.049160505 7.41005592 52627599 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Legionella pneumophila subsp. pneumophila str. Philadelphia 1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella;species:Legionella pneumophila; 7.528739788 7.647120943 7.335510215 7.327132052 7.210139614 7.636676526 7.422805513 7.622752327 7.112537573 229760745 narI Stress Oxygen limitation Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 7.651293344 7.607896347 7.479273998 7.272692246 7.831472924 7.928169836 7.452589824 7.24066144 7.672618569 114737311 pimF Organic Remediation Aromatics Aromatic carboxylic acid Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 8.093667226 7.994143124 7.981185152 7.409902746 7.785062546 7.518964613 156233863 TehB Metal Resistance Tellurium Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 7.871606053 7.5910328 7.363815901 7.480951785 7.698744253 7.811322719 7.45709896 7.353579428 118592435 phn Organic Remediation Herbicides related compound Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 7.724849273 7.632307075 7.556271291 7.46460932 7.673263333 7.870486911 7.502896938 7.83306074 46307982 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 7.083424043 7.410691196 17544986 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia solanacearum GMI1000 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 7.431672689 7.299282598 7.663749801 6.912094103 7.674350968 7.836006794 7.378091557 7.304448013 50122085 pstC Stress Phosphate limitation Pectobacterium atrosepticum SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 7.459534672 7.401882543 7.360864417 6.76404909 6.984859025 7.601827141 7.238296057 7.23404353 154156896 tfdA Organic Remediation Aromatics Chlorinated aromatics Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 7.556470845 7.458657636 7.497882267 7.335197884 7.198208832 7.56459668 7.513304338 90020477 katE Stress Oxygen stress Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 7.425283801 7.502830082 7.246450379 6.784176611 7.079286134 7.403578943 7.368194285 7.343672791 7.205222411 217336124 mannanase Carbon cycling Carbon degradation Hemicellulose Dictyoglomus turgidum DSM 6724 superkingdom:Bacteria;phylum:Dictyoglomi;class:Dictyoglomia;order:Dictyoglomales;family:Dictyoglomaceae;genus:Dictyoglomus;species:Dictyoglomus turgidum; 7.304881831 7.203882544 121606832 pilin virulence pilin Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 6.975896815 6.843609079 6.905971056 6.588462654 7.290555505 119463317 vanA Carbon cycling Carbon degradation Others Nodularia spumigena CCY9414 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nodularia;species:Nodularia spumigena; 7.699726811 7.468462245 7.681496027 7.588237192 7.620828216 238788754 pap virulence adhesin Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 7.507396341 7.240366194 7.236891162 7.687370714 7.446205708 7.540049385 7.602714302 86138907 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.668647878 7.815521127 7.987762968 7.695250008 8.00661839 8.033505929 8.265411706 8.082634916 7.992789126 237799995 type_III_secretion virulence secretion Pseudomonas syringae pv. oryzae str. 1_6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 9.391723478 9.436793855 9.081855477 9.693387293 9.273573889 9.652886758 9.340052397 152999259 iro virulence Shewanella baltica OS185 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 7.634427429 7.458581521 7.398402278 7.490067906 7.848216808 7.998028258 7.716760714 7.290105461 7.545236037 2062747 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira; 8.084029071 8.068828621 7.723895195 7.875855532 8.122779447 8.087810777 8.068969733 7.994113743 7.856407494 157962619 pcc Carbon cycling Carbon fixation Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 8.001434896 7.570123823 7.597334467 7.246413099 7.178347068 11545301 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 7.55017332 7.246911955 7.85274009 7.798915139 7.55978255 8.172157115 7.543558934 7.694687393 7.544976582 27382857 cap virulence capsule Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.70475574 7.212373629 7.350629695 7.228685477 7.779142714 7.664199969 7.470935183 189352513 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 8.519414574 8.110040151 7.604834968 7.95017301 8.075846245 8.04966316 7.818731687 7.8041192 7.674081168 118046703 nifH Nitrogen Nitrogen fixation Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 7.587573881 7.656417248 7.44630698 7.730090988 7.547322101 7.686580315 7.614880392 7.359477373 7.601308387 85699185 grpE Stress Heat shock Nitrobacter sp. Nb-311A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter; 7.415590222 8.08199586 7.993272465 7.691161597 7.670076177 7.801103887 8.036284235 7.858307017 116669176 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.735089049 7.71573513 8.034063012 7.840993583 7.740769393 7.914663781 7.784885974 7.652371073 7.729686001 187923580 catB Organic Remediation Aromatics BTEX and related aromatics Burkholderia phytofirmans PsJN 7.323895882 7.260993933 7.201543648 7.546887877 7.994720673 7.03258369 7.366283733 120323396 alkB Organic Remediation Other Hydrocarbons Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 7.088295917 7.209242593 194561935 xylG Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 8.054487712 8.030333889 7.892067582 8.660558714 8.944867896 8.822234412 8.531367744 8.280634637 189422183 rd Organic Remediation Chlorinated solvents Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 7.188559074 6.976904181 7.010060406 6.869055495 6.74410541 118619280 akbF Organic Remediation Aromatics BTEX and related aromatics Mycobacterium ulcerans Agy99 7.634982526 7.31224574 7.502029934 7.496910156 7.865233297 8.079440615 7.598271079 7.547858525 90107528 fnr Stress Oxygen stress Rhodopseudomonas palustris BisB18 7.495415731 7.341793092 7.692262546 7.327523809 7.526433663 7.735958659 7.427244674 7.584308111 7.5704934 194348064 iro virulence Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 7.554536361 7.690957516 7.239543748 7.64072472 7.916487431 7.631983113 7.99732285 8.23748302 8.190977752 83770743 tfdA Organic Remediation Aromatics Chlorinated aromatics Aspergillus oryzae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 7.634416774 7.570112139 7.656903548 7.880243007 7.876134002 7.8391037 7.565399411 7.779534056 7.720983264 99081901 oxyR Stress Oxygen stress Ruegeria sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8.044964817 8.16076283 8.024066952 8.233908623 8.440898464 8.453870778 8.421764277 8.412894979 8.337326557 225679404 Tet Antibiotic resistance other Paracoccidioides brasiliensis Pb03 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides;species:Paracoccidioides brasiliensis; 7.393405802 7.302021777 7.468892121 7.296818511 7.161888321 7.897133283 7.128034262 7.138437634 17935317 pimF Organic Remediation Aromatics Aromatic carboxylic acid Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.336416858 7.318138568 254502915 B_lactamase_A Antibiotic resistance Beta-lactamases Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 7.21914658 7.109003148 6.955692151 6.888257271 7.789433272 148239579 pstB Stress Phosphate limitation Synechococcus sp. WH 7803 7.291970131 7.219625495 6.997343343 7.062779908 7.18914051 7.792617015 10174630 alkJ Organic Remediation Other Hydrocarbons Bacillus halodurans C-125 7.289449128 7.524529329 7.455633295 7.661398088 91796194 sigma_70 Stress Sigma factors Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 7.837391194 8.703697774 8.251480606 7.64086357 8.557988719 8.016891357 8.064977918 8.130630917 209899248 dmsA Organic Remediation Others Enterobacter cancerogenus ATCC 35316 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 7.982807233 7.576356028 7.592201945 7.565245247 8.191518227 8.027730002 7.616818203 7.924991388 9971325 gyrB other category gyrB Capnocytophaga canimorsus superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga; 7.127294413 7.400097778 7.276857166 123440743 SMR_antibiotics Antibiotic resistance transporter Yersinia enterocolitica subsp. enterocolitica 8081 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 7.738175023 7.475044329 7.66480847 7.012545069 7.409963826 7.266163743 7.193238555 83318864 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.361195784 7.401148531 7.365113904 7.193324734 7.445571771 7.727299957 7.462976103 7.552832499 7.650585248 260865924 ctsR Stress Protein stress Ammonifex degensii KC4 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Ammonifex;species:Ammonifex degensii; 7.317880085 7.536511254 149675743 dehH109 Organic Remediation Chlorinated solvents Methylobacterium sp. CPA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 7.994030027 7.739493737 7.403605061 8.058237829 7.939793121 7.89324789 7.830456452 163746343 obgE Stress Radiation stress Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 7.364928523 7.440888138 7.368198281 7.315441713 7.311253123 7.710456595 7.621531658 7.49135688 7.509385242 84664430 bclA Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.436776864 7.790658709 8.205580421 7.919370389 7.508184798 8.287327644 8.150730733 8.328187831 8.299851077 120596609 phtB Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 7.161909547 7.055036242 6.925848901 6.822577223 7.305925846 116665933 nifH Nitrogen Nitrogen fixation Methanosaeta thermophila PT superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosaetaceae;genus:Methanosaeta;species:Methanosaeta thermophila; 7.413216879 7.338721531 7.297291397 7.453505148 7.701638193 7.579088777 7.817998399 7.635075263 7.474615689 116619921 sigma_24 Stress Sigma factors Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 8.091078043 8.346711613 7.963433758 8.257592566 8.426596112 8.417003409 8.729353011 8.547503028 8.4740591 108463273 alkK Organic Remediation Others Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 7.737025446 7.256333981 7.531433415 6.925216275 7.205621583 7.659126183 7.290297575 7.191537283 90856147 sox Sulphur Sulphur oxidation Allochromatium vinosum superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium; 7.29911213 7.126202713 7.626143953 6.834415429 6.930439451 60476014 rubisco Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.659143226 7.566406917 7.137883548 7.629923732 7.762994966 7.331780674 118419953 gyrB other category gyrB Alcanivorax balearicum superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 7.761209469 7.751346945 8.069264964 7.520302619 7.928798312 7.979519055 7.264647259 7.705042615 90903257 aoxB Metal Resistance Arsenic uncultured bacterium superkingdom:Bacteria; 7.456229927 7.572005004 7.623225195 7.983744551 7.781738433 7.964415174 8.145222311 8.190093995 7.647700066 78169475 rubisco Carbon cycling Carbon fixation Synechococcus sp. CC9902 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.393064603 7.231701135 7.319748057 6.937695378 6.835400473 7.628740198 7.294684712 7.19786109 7.37452549 6714775 alkK Organic Remediation Others Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 7.78950743 7.566598777 7.819401604 7.588838313 7.955057569 7.527783008 7.89674879 7.843242309 90335669 exaA Organic Remediation Chlorinated solvents Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 7.434748871 7.287504878 7.258717301 7.088607883 7.488391561 7.184526056 7.119893839 149948205 tutFDG Organic Remediation Aromatics BTEX and related aromatics Alkaliphilus metalliredigens QYMF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus metalliredigens; 7.576513519 7.553759329 7.247000953 7.057973376 7.007961778 7.060751873 7.284034249 4096596 pcaG Organic Remediation Aromatics Other aromatics Burkholderia gladioli superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.289230215 7.446364489 7.790564209 7.281797839 7.135158863 7.739084512 7.484334608 7.534773544 7.250583268 187729502 mcrA Carbon cycling Methane Methane production uncultured archaeon superkingdom:Archaea; 7.645844725 8.149377517 7.672232896 7.113673784 7.674122288 7.838896001 7.880416017 7.714363395 7.805963867 171988822 CopA Metal Resistance Copper Exiguobacterium sibiricum 255-15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 7.214931149 7.24583816 7.50550162 6.888166758 7.554995758 7.020712173 7.5199397 110831317 pmdAB Organic Remediation Aromatics Others Verminephrobacter eiseniae EF01-2 7.610846824 6.943642381 227487525 xylA Carbon cycling Carbon degradation Hemicellulose Corynebacterium glucuronolyticum ATCC 51867 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glucuronolyticum; 7.321406888 7.322509058 7.831441754 7.851602505 7.424043737 8.321801331 7.526955862 7.452501928 7.50003689 18161111 CopA Metal Resistance Copper Pyrobaculum aerophilum str. IM2 7.876207525 7.705201342 7.373503002 7.285875866 88866443 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.053674405 7.339768597 7.652225562 7.571026086 7.098050397 7.25288821 7.452695506 7.376336766 86372241 contractile_tail_sheath_protein Bacteria phage STRUCTURAL Stenotrophomonas phage SMB14 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.300114779 7.315101057 7.478526649 7.326431196 7.979987708 7.740926056 7.85029083 7.615319557 7.885167686 167652543 clpC Stress Protein stress Anaerostipes caccae DSM 14662 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Anaerostipes;species:Anaerostipes caccae; 7.815117431 7.472156911 7.562164095 7.083737121 7.378787464 7.387149967 190894358 alkK Organic Remediation Others Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.765930831 7.395360042 7.374173488 7.637469463 7.484157635 7.254900234 7.529041491 156742520 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 7.615528113 7.283879247 7.160538148 218674830 ara Carbon cycling Carbon degradation Hemicellulose Rhizobium etli GR56 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.781473069 7.775029399 7.869676888 7.502421196 7.625348045 7.989923695 7.816775008 7.699457564 7.604241163 124894021 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 7.156519929 7.275288441 6.92900708 6.748822643 7.51298197 221134953 grpE Stress Heat shock Glaciecola sp. HTCC2999 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola; 7.058192769 6.873373519 119501493 BpH Organic Remediation Aromatics Aromatic carboxylic acid Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 7.079763672 7.178339007 7.080666303 157405405 CopA Metal Resistance Copper Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 7.27474496 7.295016022 7.027068959 7.033659676 7.140630392 7.464470258 7.318827346 7.110408314 145241710 nahB Organic Remediation Aromatics Polycyclic aromatics Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.468678844 7.590631404 7.736928663 7.60824116 7.759997507 7.568447099 7.793142325 7.706376574 94470993 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.774831454 7.894161462 7.67403021 7.503437149 7.522322701 7.610647686 7.415259337 7.806679869 226939578 AceB Carbon cycling Carbon degradation others Laribacter hongkongensis HLHK9 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Laribacter;species:Laribacter hongkongensis; 8.073305102 8.055877777 8.266720774 7.737093951 8.258951947 8.279971871 8.099695049 8.225556023 53804684 mmoX Carbon cycling Methane Methane oxidation Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 7.137333023 6.983230689 7.047055853 115253557 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.284909611 8.122328929 8.131735072 8.427780822 8.002056069 7.829226564 7.644535754 8.05912605 20278799 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.632169053 7.41791373 7.252873669 7.247797817 154157632 glnA Stress Nitrogen limitation Parvibaculum lavamentivorans DS-1 7.107130959 7.345988541 6.891930798 7.029486141 7.430349447 7.255458123 7.12395345 71383844 nasA Nitrogen Assimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.732408635 7.495011666 7.460024425 7.385347276 7.842191046 67784232 amyA Carbon cycling Carbon degradation Starch Chlorobium limicola DSM 245 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium limicola; 7.451447198 7.381489439 7.332008752 7.227384085 7.260428429 7.427726248 261879372 ara Carbon cycling Carbon degradation Hemicellulose Prevotella bergensis DSM 17361 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bergensis; 7.367304298 7.304999929 7.058369664 6.745007683 7.526703495 147849120 CopA Metal Resistance Copper Synechococcus sp. WH 7803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.810306206 7.591701728 7.233023391 7.757087506 7.543539811 7.847264109 8.12198847 7.963525178 227113544 grpE Stress Heat shock Pectobacterium carotovorum subsp. brasiliensis PBR1692 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 7.984861032 7.663575503 7.630959413 7.866610514 7.922149963 7.944811544 8.228247937 190685338 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 7.776121736 7.535790133 7.640894324 7.793760645 7.687266543 7.311353393 152306 nifH Nitrogen Nitrogen fixation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 7.438413583 7.650380305 7.412563066 7.497032892 187928450 Catechol Organic Remediation Aromatics Other aromatics Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.249378131 8.150101242 8.029269045 7.488416973 8.375433821 7.637899199 7.962669078 7.874308183 8.268899151 86211171 gyrB other category gyrB Pseudomonas qianpuensis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.374582455 7.351390328 49333363 exoglucanase Carbon cycling Carbon degradation Cellulose Volvariella volvacea superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pluteaceae;genus:Volvariella; 7.486358726 7.287901057 7.081239312 7.268068277 238716032 pstB Stress Phosphate limitation Yersinia bercovieri ATCC 43970 7.480732566 7.755318342 7.367573335 7.164569204 7.694268163 7.484314535 7.321718488 159892106 sigma_70 Stress Sigma factors Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 6.949830298 7.120293357 7.423287008 6.798512224 6.66205881 7.541659386 148850486 ChnA Organic Remediation Other Hydrocarbons Bacillus sp. SG-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 8.066148048 7.978388819 7.629523938 7.727420824 7.740309806 8.509155013 7.76046899 7.663025107 7.605276293 126708356 dehH109 Organic Remediation Chlorinated solvents Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 8.262305773 8.09598714 7.969838923 7.28098368 8.171022081 8.004956687 8.011400678 7.901323777 7.702091521 284047611 obgE Stress Radiation stress Acidaminococcus fermentans DSM 20731 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Acidaminococcus;species:Acidaminococcus fermentans; 7.416845516 7.256312516 7.60172415 7.107717167 7.346659879 7.682421207 7.460154739 7.490757695 7.741465625 99030634 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 7.325635192 7.521050013 7.316408625 7.394907913 7.171509722 239834121 oxyR Stress Oxygen stress Ochrobactrum intermedium LMG 3301 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 7.230352131 7.079138358 6.954716271 7.202766716 221086880 ChrA Metal Resistance Chromium Geobacillus sp. Y412MC61 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.183071794 7.344748318 7.137521244 7.034267902 7.540647082 7.027076986 6.859351816 7.355612771 254980038 katE Stress Oxygen stress Nitrosomonas sp. AL212 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 8.194847214 7.967740848 7.968354323 7.958240057 39650178 CadA Metal Resistance Cadmium Rhodopseudomonas palustris CGA009 7.323940034 7.304791292 7.548257584 7.819664222 7.330793906 8.077094633 7.245036404 7.070930585 7.404709544 6689357 xylanase Carbon cycling Carbon degradation Hemicellulose Thermoascus aurantiacus superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Thermoascus; 7.681445736 7.584316636 7.514415758 7.45904144 7.580017467 7.624726469 7.223088115 7.565448502 7.443869548 115421897 sigma_24 Stress Sigma factors Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 7.593658837 7.415952574 7.146884961 6.985684403 6.960307038 7.552975961 7.10347474 6.881092336 7.238897397 145848356 phoB Stress Phosphate limitation Ruminococcus torques ATCC 27756 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus torques; 7.004244385 7.31439259 197122060 AceA Carbon cycling Carbon degradation others Anaeromyxobacter sp. K superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 7.779902458 7.508228059 7.897102213 7.833160161 7.866622892 8.160931458 8.197885742 8.00712834 8.49819954 189341661 BchY other category chlorophyllide reductase Chlorobium limicola DSM 245 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium limicola; 7.819519642 7.991157471 7.381090508 7.536623543 7.713422747 8.211854384 7.948437261 7.867304436 7.986652235 209884871 ahpC Stress Oxygen stress Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 6.794769843 6.910491963 7.121033613 6.624432216 7.157914496 139003460 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.261219122 7.205815084 7.361934699 7.051364881 7.007604484 7.494062536 242262256 ppk Phosphorus Phosphorus utilization Clostridium cellulovorans 743B superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium cellulovorans; 7.014702569 7.14106435 6.640298416 7.405795166 56267935 sigma_38 Stress Sigma factors Listonella anguillarum superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Listonella; 7.218724713 6.830727463 270328396 sigma_70 Stress Sigma factors Acidovorax avenae subsp. avenae ATCC 19860 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax avenae; 7.417988735 7.791751234 7.293408856 6.986995102 7.72235373 7.320460009 7.508147998 192897630 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 7.827137553 7.550707781 7.419360205 7.221683596 6.929389887 7.071876761 7.373417001 7.214860508 217973255 B_lactamase_C Antibiotic resistance Beta-lactamases Shewanella baltica OS223 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 7.409707256 7.457772527 7.529012281 7.476465389 7.339331883 7.418496971 221632805 sigma_70 Stress Sigma factors Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 7.743882018 8.003113409 7.859848025 7.941666867 8.273236853 8.232390826 8.212679987 7.947178651 8.190889626 156529061 endochitinase Carbon cycling Carbon degradation Chitin Vibrio harveyi ATCC BAA-1116 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 7.31520417 7.384289528 159139627 pstC Stress Phosphate limitation Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.950883908 7.777898581 7.630163065 7.535968468 7.407392224 7.37984006 7.428997189 7.632774229 7.456451072 89896919 CODH Carbon cycling Carbon fixation Desulfitobacterium hafniense Y51 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 7.910760298 8.056041691 7.88428013 7.576121311 7.764326646 7.699175704 7.860038429 7.871341084 7.983805482 184199347 nirK Nitrogen Denitrification uncultured denitrifying bacterium superkingdom:Bacteria; 7.458586903 7.138759957 7.135971735 167625936 SMR_antibiotics Antibiotic resistance transporter Shewanella halifaxensis HAW-EB4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella halifaxensis; 7.351961266 7.366573098 7.478494624 7.264792934 7.483141578 7.68972281 7.740960997 7.464886136 7.446245205 145296438 ChrA Metal Resistance Chromium Corynebacterium glutamicum R superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 7.695438507 7.917868534 7.740740978 7.293809066 7.797176171 7.601373891 7.805214399 78692510 CopA Metal Resistance Copper Bradyrhizobium sp. BTAi1 8.06725808 8.185813196 7.777334309 8.039555496 7.943382674 7.937914558 7.983656294 7.874185435 7.986365904 239910838 pstB Stress Phosphate limitation Thermococcus gammatolerans EJ3 7.906928308 7.359515639 7.483803277 7.359868871 7.616574291 7.296618523 7.693530825 7.138802296 2983552 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Aquifex aeolicus VF5 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Aquifex;species:Aquifex aeolicus; 7.130817709 7.335225592 7.391606608 7.147749563 7.679960171 6.925737072 7.188715544 124008345 iuc virulence aerobactin Microscilla marina ATCC 23134 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Microscilla;species:Microscilla marina; 8.850132036 8.821288125 8.474334946 8.358808058 8.888077777 8.548943989 8.781668158 8.791789528 8.114751967 239817212 ureC Nitrogen Ammonification Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 7.255325956 7.342010297 7.111827167 7.480018993 7.691889256 108798432 CopA Metal Resistance Copper Mycobacterium sp. MCS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.128593531 7.259560881 7.227426789 7.026203057 7.033257861 7.755689265 7.424924547 7.208534427 7.330267071 12484563 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.858096301 7.989010106 7.541697004 7.625809084 7.636979768 7.848735212 6910981 mnp Carbon cycling Carbon degradation Lignin Dichomitus squalens 7.891989191 7.709937603 7.472522592 7.6677573 7.493619666 8.259288457 7.664982552 7.365936825 7.431996814 62003533 narG Nitrogen Denitrification uncultured bacterium 7.365479829 7.679094052 7.051932554 7.280499843 7.648637786 7.439780573 7.70397338 146406440 tftH Organic Remediation Aromatics Chlorinated aromatics Bradyrhizobium sp. BTAi1 7.022325043 7.197401578 7.591850656 7.364844068 6.845823513 7.048305324 7.423151971 258635355 katE Stress Oxygen stress Pantoea sp. At-9b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 7.680360573 7.636608603 7.560357106 7.101404995 7.114358216 7.544472986 7.515667219 7.569997483 7.579246373 108462780 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 7.748815195 7.914384087 7.625097354 7.523244688 7.803886595 7.437440277 7.673494398 7.662135578 39934313 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.411210468 7.315078621 7.289950149 7.318569545 7.522584493 7.71212358 7.464108228 169846951 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 7.793968757 7.4652804 7.258810487 7.527063303 7.615006387 7.712278799 7.614624839 7.607925045 7.693248304 77961236 dmsA Organic Remediation Others Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 7.711881359 7.604643482 7.474208819 7.272021193 7.500346772 7.598035158 7.766327723 7.542818417 7.683247648 162568553 aoxB Metal Resistance Arsenic uncultured bacterium superkingdom:Bacteria; 6.749699979 7.063702849 32350554 Host_recognition_T4_type Bacteria phage HOST RECOGNITION/STRUCTURAL Enterobacteria phage RB69 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.323188123 6.956480617 76558196 alkK Organic Remediation Others Natronomonas pharaonis DSM 2160 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natronomonas;species:Natronomonas pharaonis; 7.792082167 7.821252867 7.743084966 7.88382564 7.940023052 7.633818631 8.475994286 7.840138183 8.436919031 72162533 gyrB other category gyrB Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 7.716678575 7.605911455 8.051997838 7.605669455 7.951654531 8.000120211 7.816173064 7.647189693 94471011 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.334471205 7.257902012 188587070 CadA Metal Resistance Cadmium Natranaerobius thermophilus JW/NM-WN-LF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Natranaerobiales;family:Natranaerobiaceae;genus:Natranaerobius;species:Natranaerobius thermophilus; 7.42457397 7.212379484 7.068737725 7.153744955 6.742579946 7.436318824 7.177190765 6.88583439 55978122 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.885465549 7.742830287 7.759737321 7.414548685 7.91531867 7.882366792 7.846500188 7.579551148 7.832054101 148807326 metC Metal Resistance Mercury Pseudomonas aeruginosa superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.329624901 7.773026002 7.934075708 7.90836497 7.6757556 8.215455719 7.510718147 7.440805043 7.499133109 114776420 MFS_antibiotic Antibiotic resistance transporter Mariprofundus ferrooxydans PV-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Zetaproteobacteria;order:Mariprofundales;family:Mariprofundaceae;genus:Mariprofundus;species:Mariprofundus ferrooxydans; 7.642275713 7.595230949 7.597939504 7.768042966 8.008278634 7.682550675 7.473536128 237685247 ureC Nitrogen Ammonification Teredinibacter turnerae T7901 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 7.504122126 7.575458604 7.526192533 7.140133742 7.816237607 7.732245146 7.435755259 7.280479284 227868984 clpC Stress Protein stress Lactobacillus acidophilus ATCC 4796 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus acidophilus; 7.215900967 6.819123307 247544253 glnR Stress Nitrogen limitation Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.199622092 7.114109962 7.26721584 7.094272726 7.392859682 213965471 pimF Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium amycolatum SK46 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium amycolatum; 7.946888007 7.970053799 7.775485122 7.14323554 7.731215081 7.909999033 8.017934515 2264396 phenol_oxidase Carbon cycling Carbon degradation Lignin basidiomycete CECT 20197 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 7.521563558 7.154313333 7.270003205 7.048714083 7.027040126 7.752079851 7.226506987 7.361447985 150032266 nmoA Organic Remediation Aromatics Nitoaromatics Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 7.607234749 7.914542511 7.37347965 7.685862619 7.633639523 7.738037387 7.625550135 7.187871705 7.610730629 38427022 narG Nitrogen Denitrification uncultured bacterium 7.776505617 7.55746133 7.476750244 7.527126485 7.669776883 7.415287257 8.012503829 7.88444829 7.497265804 19918691 mcrA Carbon cycling Methane Methane production Methanosarcina acetivorans C2A superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina acetivorans; 7.386819101 7.27930255 7.10868533 7.536861654 240170468 sigma_24 Stress Sigma factors Mycobacterium kansasii ATCC 12478 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 7.463345006 7.466999059 7.676135043 7.783645185 7.957280119 7.813266261 7.927373096 7.972488109 7.681195288 262037109 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 7.443842224 7.469793201 7.106628797 6.808117857 7.781310616 7.440501172 6.963246944 229539716 sigma_38 Stress Sigma factors Planctomyces limnophilus DSM 3776 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces limnophilus; 7.713445702 7.758591168 7.490756035 7.52777767 7.506177831 7.658193303 7.534910118 7.319376892 7.389863356 182677549 tfdA Organic Remediation Aromatics Chlorinated aromatics Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 6.98742675 7.51129209 7.464055643 7.344489622 7.052722908 7.69215781 221311567 ChrA Metal Resistance Chromium Bacillus subtilis subsp. subtilis str. 168 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 7.575360318 7.372778959 7.472552441 7.300484111 7.759626187 7.144219519 7.294664904 7.293159465 149950542 nrfA Nitrogen Dissimilatory N reduction Alkaliphilus metalliredigens QYMF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus metalliredigens; 7.846507553 8.31229258 8.173294425 7.942552823 8.418021333 8.204591599 8.29126519 8.23349546 7.919442838 49613525 NirB Nitrogen Assimilatory N reduction Pectobacterium atrosepticum SCRI1043 7.416886126 7.148565563 6.870434269 6.784569927 146188544 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.921749165 8.007297101 7.689661687 7.127368322 7.003169604 7.736760112 121554264 nahA Organic Remediation Aromatics Polycyclic aromatics Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 8.030186315 7.813331369 7.480531806 7.023447714 7.374812678 7.573744244 7.60372144 7.772918669 7.66436005 28810059 iro virulence Vibrio parahaemolyticus RIMD 2210633 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.472966848 7.536112215 7.528538874 7.167410297 7.329916209 241215473 phoB Stress Phosphate limitation Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 8.329203599 7.660227094 7.870842178 7.722354921 7.667226168 7.784926484 169757364 glnA Stress Nitrogen limitation Pseudomonas putida W619 7.358293263 7.323923756 7.004671895 7.506577908 145688760 hrcA Stress Heat shock Streptococcus suis 05ZYH33 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus suis; 7.279010043 7.221863483 6.738737178 7.402399033 7.021573843 7.0367632 156976331 ArsC Metal Resistance Arsenic Vibrio harveyi ATCC BAA-1116 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 7.506977666 7.218308753 6.947247174 6.727436853 6.918889355 7.425398122 7.264597249 7.034016497 7.293614471 145304829 linB Organic Remediation Pesticides related compound Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 8.238463975 8.033727371 7.969095895 7.793533265 8.457499622 8.363771241 8.086459276 8.159426182 72388567 gyrB other category gyrB Psychrobacter frigidicola superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 8.087501364 7.763855327 7.85449395 7.829735182 7.814824093 7.525938134 7.645128712 158447436 ChrA Metal Resistance Chromium Peptostreptococcus micros ATCC 33270 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;species:Parvimonas micra; 7.089506302 7.306292922 7.143965392 7.134998176 7.595397418 146194468 perR Stress Oxygen stress Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.888283153 8.09412702 7.825663872 7.38764394 7.802774621 7.88251375 7.647606352 8.48697351 7.916726839 222353995 APS_AprA Sulphur adenylylsulfate reductase uncultured bacterium superkingdom:Bacteria; 7.708084181 7.366899734 7.748401552 7.395326188 7.666853853 7.639735331 7.703291533 50470529 ZitB Metal Resistance Zinc Arabidopsis lyrata subsp. lyrata superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Streptophyta;order:Brassicales;family:Brassicaceae;genus:Arabidopsis;species:Arabidopsis lyrata; 7.269617475 7.073178247 7.248745689 68242692 nifH Nitrogen Nitrogen fixation Pelodictyon phaeoclathratiforme BU-1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 7.282405261 7.365263741 7.216090997 7.265092731 7.73560342 7.096800657 7.193012722 7.522807608 50305203 AceA Carbon cycling Carbon degradation others Kluyveromyces lactis superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Kluyveromyces;species:Kluyveromyces lactis; 8.061344428 8.049450451 7.563498075 7.655480972 7.721125155 7.936288487 7.728926176 7.982516504 7.69100576 254244508 Mex Antibiotic resistance transporter Pseudomonas aeruginosa 2192 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 7.737858806 7.576866051 7.401234262 7.470280205 6.987708253 7.843630723 7.566121331 7.775655098 7.565339175 2760908 xylanase Carbon cycling Carbon degradation Hemicellulose Caldicellulosiruptor sp. Rt69B.1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Caldicellulosiruptor; 7.168450723 6.921819101 7.08197849 6.819081885 6.813079169 167840682 B_lactamase Antibiotic resistance Beta-lactamases Burkholderia thailandensis MSMB43 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 7.456011658 7.390552865 7.381503831 7.231750159 7.596647409 7.797723742 7.454146152 7.661077291 218274293 ara Carbon cycling Carbon degradation Hemicellulose Roseburia intestinalis L1-82 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia intestinalis; 7.193356167 7.215344328 7.326173981 7.123125288 6.978918234 7.411011782 7.362290293 7.314039993 7.580987446 149120187 sox Sulphur Sulphur oxidation Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 7.48081408 7.188965399 7.032384908 7.479914261 7.698789675 7.638064772 84511701 gyrB other category gyrB Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 7.507299373 7.572136429 7.684548914 7.405009976 7.623586835 7.747629426 7.870856862 7.519591918 7.517828855 146406798 bphA Organic Remediation Aromatics Polycyclic aromatics Bradyrhizobium sp. BTAi1 8.004209416 7.772811911 7.866778398 7.653013097 8.09332233 7.77775276 7.887132216 8.094373516 7.98696964 220710253 ArsC Metal Resistance Arsenic Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.330241042 7.44200867 7.456091359 7.433469534 7.706005606 7.755536817 7.812305298 7.663626164 7.907605371 63029775 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.575152891 7.142341362 7.56606347 7.498992235 7.806077305 7.678637133 7.929764205 7.613846121 7.675931369 169761882 katA Stress Oxygen stress Pseudomonas putida W619 7.585072314 7.579586595 7.682473955 6.964024319 7.483019064 7.628139452 7.766413548 7.587718716 7.351884212 77378612 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.275397444 7.47094737 7.592221015 7.675996801 7.673158273 7.441570657 7.315225144 7.583292368 111018069 pulA Carbon cycling Carbon degradation Starch Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7.368999029 7.432309605 7.442522544 7.65556648 7.347159133 8.011196273 117959694 phenol_oxidase Carbon cycling Carbon degradation Lignin Ganoderma lucidum superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Ganodermataceae;genus:Ganoderma; 8.065149415 8.334209312 8.0118359 7.593411732 8.316027953 7.561627065 8.003766201 7.734609223 8.226996585 75906098 type_III_secretion virulence secretion Candidatus Hamiltonella defensa superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Candidatus Hamiltonella; 7.190458727 7.355215007 6.764924499 6.798039673 7.49681228 163751373 pstB Stress Phosphate limitation Shewanella benthica KT99 7.105162892 7.325901678 7.140423583 6.664833694 6.661016434 7.470792908 90304036 ChrA Metal Resistance Chromium Coccidioides immitis RS superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides immitis; 7.211776958 7.379634587 7.126632957 7.157997157 6.853190084 6.922365531 260635968 clpC Stress Protein stress Prevotella sp. oral taxon 472 str. F0295 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella sp. oral taxon 472; 7.858285935 7.441392227 7.469607082 6.760016432 7.014915178 7.537900336 7.03045504 6.955999991 7.475113494 51244006 MFS_antibiotic Antibiotic resistance transporter Desulfotalea psychrophila LSv54 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfotalea;species:Desulfotalea psychrophila; 7.271548485 7.084128708 7.121407096 6.860921297 7.077306396 7.534862753 7.349373545 7.321328603 7.273476644 110635001 CopA Metal Resistance Copper Mesorhizobium sp. BNC1 7.191730885 7.686018552 7.304608822 6.977944115 7.134355117 7.9380745 7.427754799 7.52700491 7.188272419 35210327 gyrB other category gyrB Alicyclobacillus acidocaldarius superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus; 7.894047232 7.399627589 7.549760952 7.078190129 7.576328145 7.581065523 7.556315605 7.29768298 7.188370926 218439766 sigma_70 Stress Sigma factors Cyanothece sp. PCC 7424 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.122595847 8.115242932 8.608349455 8.415942526 8.853137853 8.565190493 8.637080359 8.301528989 56550646 ChrA Metal Resistance Chromium Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 7.506572037 7.686133952 7.469821614 7.313273779 7.53881213 7.833417672 7.397874366 7.660192664 7.614725443 149376813 pilin virulence pilin Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 8.151287903 7.848102595 7.71074831 7.905735254 7.929388119 8.121782816 7.751290591 7.539682755 7.786017674 40641229 qorL Organic Remediation Aromatics Polycyclic aromatics Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.387954394 7.214867083 7.321696113 7.077533009 7.038029191 255279162 glnR Stress Nitrogen limitation Geobacillus sp. Y4.1MC1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.285356396 7.191267134 7.169487279 7.369133571 6.767573771 6.940550096 218213287 tutFDG Organic Remediation Aromatics BTEX and related aromatics Clostridium hylemonae DSM 15053 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 7.262695617 7.027738877 6.998811162 7.48164572 192362302 ppk Phosphorus Phosphorus utilization Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 6.986806591 6.8178649 7.01658588 6.934347793 6.783700107 268679145 obgE Stress Radiation stress Sulfurospirillum deleyianum DSM 6946 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Sulfurospirillum;species:Sulfurospirillum deleyianum; 7.737660993 7.137529013 7.380213212 6.812923273 7.45544631 39574432 alkK Organic Remediation Others Bdellovibrio bacteriovorus HD100 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 7.17074891 6.963746355 78356360 ZntA Metal Resistance Zinc Desulfovibrio desulfuricans G20 9.091360483 8.620838006 8.564015962 221066517 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.852226296 7.947075437 7.518310252 7.084036961 7.590694844 7.854156777 7.781246553 7.555077302 7.669523104 218170675 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.259198837 7.072806401 7.018067862 6.800027494 7.396473601 7.070581695 7.30850306 241880911 SMR_antibiotics Antibiotic resistance transporter Desulfovibrio vulgaris RCH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 6.995288936 7.037126234 6.836180772 7.305831165 6.885575535 7.148950575 7.551308113 224475833 MFS_antibiotic Antibiotic resistance transporter Staphylococcus carnosus subsp. carnosus TM300 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus carnosus; 7.186170821 6.915040155 7.154923712 6.529477634 7.233428902 188995275 atzA Organic Remediation Herbicides related compound Porphyromonas gingivalis ATCC 33277 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas;species:Porphyromonas gingivalis; 7.695712608 7.283618468 7.26560817 7.148019444 7.217423367 7.487845593 7.336993799 7.314091873 7.003157898 46917300 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.204505997 7.081298268 254818779 narI Stress Oxygen limitation Mycobacterium intracellulare ATCC 13950 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 7.738238018 7.529122445 7.189291724 7.427417813 7.462120941 7.382434879 23492988 ArsC Metal Resistance Arsenic Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 7.427489581 7.52006038 7.542848238 7.385559979 7.432467182 7.652947684 7.450926096 7.491194086 197789551 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 7.699258345 7.365288245 7.523982869 7.019393332 7.303084704 7.216521477 7.234605391 7.363529115 227219654 ahpC Stress Oxygen stress Atopobium vaginae DSM 15829 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Atopobium;species:Atopobium vaginae; 7.41763001 7.5557723 7.457030254 7.140766739 7.78600837 77964467 alkK Organic Remediation Others Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.833494092 7.676138851 7.680334645 7.697130079 8.066472027 7.892988766 7.92978132 7.743770604 7.761842117 194292621 ArsC Metal Resistance Arsenic Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 7.637457276 7.725124036 7.372549949 7.244028789 7.686385486 8.310115299 7.805031403 7.353489049 7.630815301 196202824 sigma_70 Stress Sigma factors Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.564005571 7.356904206 7.4790854 7.147037175 7.000490532 7.348220391 260654914 pstB Stress Phosphate limitation Jonquetella anthropi E3_33 E1 7.221233054 7.155923892 7.179831826 6.656130726 7.214257884 7.218365872 6.912254909 7.158957402 229917446 srt virulence surface protein Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 7.056748434 6.824214115 6.933832014 170143145 ChrA Metal Resistance Chromium Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 7.941031312 8.044657636 7.829877107 7.437731118 7.885816429 8.032655004 7.963419504 108801214 ArsC Metal Resistance Arsenic Mycobacterium sp. MCS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.785830727 7.633261988 7.242781502 6.93306585 7.066151264 7.571068763 149385868 P450 Energy process Energy process Pichia stipitis CBS 6054 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Scheffersomyces;species:Scheffersomyces stipitis; 7.598036818 7.697752521 7.525345027 7.390872856 7.635258042 7.598363837 87135843 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 7.481150843 7.295306032 7.572046057 7.232647819 7.461780704 7.439409616 7.459203699 7.457713038 91682484 rubisco Carbon cycling Carbon fixation Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.565175396 8.06451308 7.704351747 7.803741175 8.471989517 7.899008077 7.866020697 8.086120249 256805197 phoB Stress Phosphate limitation Streptomyces viridochromogenes DSM 40736 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 8.718248976 8.55987511 8.690193559 8.306151261 8.785202798 8.383382061 8.567305364 8.697723925 117647704 nitA Organic Remediation Aromatics Other aromatics Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 7.666885325 7.774596482 8.021255901 7.752142979 7.65333575 7.981271379 133778496 endochitinase Carbon cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 8.346284697 8.661336045 8.28715481 8.529501009 8.57658075 8.630349019 8.615567743 8.816647887 8.624750327 94422944 glnA Stress Nitrogen limitation Sphingomonas sp. SKA58 7.119001276 6.949096635 225194061 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 7.96573644 8.232620123 7.752853983 7.354181348 7.876562785 7.779008108 7.706807993 268324868 pstA Stress Phosphate limitation uncultured archaeon 7.279767434 7.162303491 7.086896892 225172592 glnA Stress Nitrogen limitation Desulfonatronospira thiodismutans ASO3-1 7.413381072 7.23865123 7.420933568 7.480236911 7.490274364 7.258706597 88643409 dsrA Sulphur sulfite reductase uncultured prokaryote 7.57480246 7.671261212 7.346497735 7.45297654 7.610911072 7.660816103 7.814246697 7.499914182 7.289964664 189348143 B_lactamase_C Antibiotic resistance Beta-lactamases Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 7.751728935 7.600524731 7.634540312 7.584560672 7.213223547 227237556 xylA Carbon cycling Carbon degradation Hemicellulose Mobiluncus curtisii ATCC 43063 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus curtisii; 7.31172135 7.423334008 7.417536521 7.381466299 7.415502837 7.249456875 7.4303314 158138777 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.618539801 7.627234023 7.51470615 7.240415734 7.421759064 7.328610396 7.275369328 7.604634766 209504640 ophC Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.05899532 8.323665956 7.800808585 7.815759986 8.144233296 8.008576612 8.047299069 7.947505117 146417304 nagG Organic Remediation Aromatics Aromatic carboxylic acid Pichia guilliermondii ATCC 6260 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Meyerozyma;species:Meyerozyma guilliermondii; 7.170176447 7.05046834 6.948374272 171192373 gyrB other category gyrB Polynucleobacter necessarius subsp. necessarius STIR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 7.66522925 7.525797722 7.470081955 7.518291077 7.614181058 7.809133581 121534013 cda Carbon cycling Carbon degradation Starch Thermosinus carboxydivorans Nor1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Thermosinus;species:Thermosinus carboxydivorans; 7.518150858 7.756625897 7.568609193 7.228469221 7.206621379 7.534033638 7.653501755 7.428507131 7.446890245 262037087 amoA Nitrogen Nitrification superkingdom:Archaea; 7.322280347 7.647364551 8.245431339 7.829437707 8.13457814 7.918306242 8.023237577 8.514307464 8.000839082 217507504 fnr Stress Oxygen stress Thauera sp. MZ1T 7.77808129 8.097213588 7.706804424 8.083245077 7.66265159 7.81074173 7.778444619 7.664073019 212686596 ppk Phosphorus Phosphorus utilization Providencia alcalifaciens DSM 30120 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 8.023540706 7.642637693 7.842969859 7.989422438 7.874135032 7.80930875 7.65044637 251791046 obgE Stress Radiation stress Dickeya zeae Ech1591 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 7.55414359 7.18366984 7.153679168 6.803145202 7.060661706 7.645078576 7.344774034 7.364176086 145320698 vip virulence virulence protein Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 7.622023378 7.455796316 7.609173038 7.977073104 7.791017661 7.268372961 149951425 tutFDG Organic Remediation Aromatics BTEX and related aromatics Alkaliphilus metalliredigens QYMF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus metalliredigens; 7.10600951 7.373639392 7.592885382 7.113254733 6.772118187 7.741550984 6.866401793 7.514955015 66846637 pectinase Carbon cycling Carbon degradation Pectin Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 7.552155598 7.750361457 7.599849738 7.545177043 7.405696981 7.710248531 7.742415116 7.834648703 152990865 dnaK Stress Heat shock Nitratiruptor sp. SB155-2 7.443706304 7.412726648 6.938984028 7.443273316 259348848 glnA Stress Nitrogen limitation Silicibacter sp. TrichCH4B 7.042459051 7.356809005 7.258709562 7.25919997 31747606 nitrogen_fixation_genes Bioleaching Nitrogen Leptospirillum ferrooxidans 7.71386124 7.764721053 7.669741729 7.842760711 7.85005796 8.008133836 7.876059646 7.508688701 7.627947219 118424479 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.47960127 8.046559731 7.765034405 7.681133221 7.555217071 7.727052975 218675778 APS_AprA Sulphur adenylylsulfate reductase gamma proteobacterium symbiont of Robbea sp. 3 SB-2008 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.375578783 7.864056909 7.450432688 7.704989647 7.461233469 7.377354346 7.281291396 7.610917886 71156373 pcc Carbon cycling Carbon fixation Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 7.35913046 7.716310958 8.056705295 7.93479975 7.234915418 8.279863364 7.789203283 7.276601179 7.696919016 4883833 bco Organic Remediation Aromatics Aromatic carboxylic acid Clostridium symbiosum superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 8.084469365 7.894291908 7.521528594 7.751638246 7.655404521 7.593361265 7.828787907 254394851 katE Stress Oxygen stress Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 7.399768302 7.718296205 7.270382449 7.256118252 7.870988268 7.293073136 7.545162257 7.660314289 88778168 pstA Stress Phosphate limitation Reinekea sp. MED297 7.037926558 7.37042176 158509264 pbrA Metal Resistance Lead Desulfococcus oleovorans Hxd3 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus;species:Desulfococcus oleovorans; 7.122547685 7.154175569 7.547199124 7.632577539 7.260646744 7.953476726 7.140950532 7.326978092 7.60041852 118441024 phoB Stress Phosphate limitation Methylophilales bacterium HTCC2181 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales; 7.546945067 7.333567341 7.216732182 7.134167506 7.604345815 91691552 ahpF Stress Oxygen stress Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.042214231 7.856649248 7.779671016 7.815763637 7.938887256 7.780530026 8.118254737 7.592346107 212666326 mannanase Carbon cycling Carbon degradation Hemicellulose Bacteroides dorei DSM 17855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides dorei; 7.586083543 7.327470057 7.270159109 7.228469221 7.127889206 7.925811581 7.097818706 7.078987301 50547497 ppx Phosphorus Phosphorus utilization Yarrowia lipolytica superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Dipodascaceae;genus:Yarrowia;species:Yarrowia lipolytica; 7.974039817 8.187524264 7.823037309 7.448995074 7.998750006 7.948972422 7.991398165 8.056925349 8.010608731 94556491 pilin virulence pilin Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 7.29402071 7.404677087 118473920 TerC Metal Resistance Tellurium Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 7.132737399 7.059008826 58419337 gyrB other category gyrB Wolbachia endosymbiont strain TRS of Brugia malayi superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales;family:Rickettsiaceae;genus:Wolbachia;species:Wolbachia endosymbiont of Brugia malayi; 7.282222043 7.036531793 7.163934549 6.932343579 7.186964277 7.395956033 7.74093508 7.123128493 7.233393031 257813519 glnA Stress Nitrogen limitation "Enterococcus faecium 1,230,933" 7.480235279 7.489931785 7.326894526 7.474531975 7.45732546 7.213496813 85704480 ureC Nitrogen Ammonification Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.901678432 8.403796787 7.740071141 7.876743471 8.231021103 8.261277506 8.098386769 7.918245938 78363167 glnA Stress Nitrogen limitation Thiomicrospira crunogena XCL-2 7.359548022 7.313299688 7.179583393 56698515 bclA Organic Remediation Aromatics Aromatic carboxylic acid Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 7.880596596 7.962928597 7.615433442 7.77014956 7.83379586 8.136815725 8.211923625 7.939329118 7.680271086 194347816 B_lactamase_C Antibiotic resistance Beta-lactamases Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 7.829732169 7.694090086 7.493542623 7.764736705 7.829366092 7.688111826 8.028021515 8.334701746 116617179 gyrB other category gyrB Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 7.200631829 7.271002871 7.272022432 7.211051361 7.169741869 56567522 endochitinase Carbon cycling Carbon degradation Chitin Torrubiella confragosa superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Cordycipitaceae;genus:Torrubiella; 7.998367531 7.818436934 8.047520502 7.482670463 8.40309985 8.032171322 7.848958998 8.084374871 268161761 sigma_38 Stress Sigma factors Photobacterium damselae subsp. damselae CIP 102761 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium damselae; 7.432669163 7.025797762 238491150 iro virulence Aspergillus flavus NRRL3357 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus flavus; 7.819327574 8.007997463 7.728971024 7.850019904 7.454778773 7.622418279 7.610876195 7.394076413 119718511 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.09067473 8.174256347 7.95757024 8.274383296 7.683932277 8.195094454 8.018716345 7.836153975 118619890 CopA Metal Resistance Copper Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 7.914685344 7.30580463 7.718288429 7.38014103 7.735557728 7.731741054 7.884811787 7.814467014 7.618591927 126236917 CopA Metal Resistance Copper Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.743957505 7.421407824 7.481495366 7.260334291 7.648643156 8.076187788 7.794125904 7.47156901 7.522108805 116694347 linC Organic Remediation Pesticides related compound Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 7.409363504 7.331519958 76058115 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.335278809 6.925395584 78093566 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.059818974 7.575290122 7.439881725 8.031667966 7.893523146 7.832398068 7.839498564 7.554449754 260220985 pstS Stress Phosphate limitation Curvibacter putative symbiont of Hydra magnipapillata superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 7.332987382 7.279270786 7.420998595 7.330445074 7.529718403 7.149042268 7.078336553 7.278957591 218321621 phoB Stress Phosphate limitation Vibrio splendidus LGP32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 7.122056934 7.113085711 256533518 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 7.326851663 7.176031806 7.269955603 7.401179893 7.078096023 7.591858433 120435539 CopA Metal Resistance Copper Gramella forsetii KT0803 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Gramella;species:Gramella forsetii; 8.02703706 7.561105933 8.044394072 7.193229709 7.933666089 7.594098519 7.888411092 8.006160603 7.465925194 238927119 ahpF Stress Oxygen stress Selenomonas flueggei ATCC 43531 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas flueggei; 7.73436419 8.157902426 7.949037825 8.068027255 8.577319484 8.136958529 8.328394437 8.349181797 255336405 glnA Stress Nitrogen limitation Hyphomicrobium denitrificans ATCC 51888 7.957155966 7.929176649 8.189554317 7.832110824 8.09933211 7.952826619 8.120962439 8.462807757 8.000312862 13475805 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 7.438609116 7.314564815 7.337002866 7.072722442 7.223172343 7.834564434 239520839 pstB Stress Phosphate limitation Clostridiales bacterium 1_7_47_FAA 7.316309231 7.163892683 7.239622487 7.196475485 7.515793032 7.052014793 7.039220111 161382499 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 7.201360014 7.712530934 7.63436102 7.407566185 7.394443842 7.907551762 7.361798614 7.635059134 7.009262709 256037921 SMR_antibiotics Antibiotic resistance transporter Chitinophaga pinensis DSM 2588 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 7.142576895 6.963793243 6.915640493 21242004 obgE Stress Radiation stress Xanthomonas axonopodis pv. citri str. 306 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas axonopodis; 7.671895604 7.565915372 7.347791464 7.343283371 7.485658991 7.255183266 7.475852991 108757988 CopA Metal Resistance Copper Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 6.749778353 7.37386653 7.439528627 7.153851525 116193587 AceB Carbon cycling Carbon degradation others Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 7.953541472 7.766334241 7.755395525 7.68227685 7.804492329 8.098214486 8.076806514 7.668712824 7.580649962 187978242 BpH Organic Remediation Aromatics Aromatic carboxylic acid Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7.039175456 7.168945864 7.439390801 6.694486874 7.397899688 83749274 nagG Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia solanacearum UW551 8.189411095 8.364235361 7.964631081 7.841245716 8.57343582 8.141908881 7.862660684 8.262321713 114320293 pstB Stress Phosphate limitation Alkalilimnicola ehrlichii MLHE-1 7.873179049 7.657547817 7.369686901 7.272961807 7.736562099 7.746572397 7.775334729 7.546725686 7.473318146 261344523 pstS Stress Phosphate limitation Providencia rustigianii DSM 4541 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 7.670368672 7.361692151 7.393236523 7.199782539 7.356114687 7.293127222 254514274 B_lactamase_C Antibiotic resistance Beta-lactamases gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.557801523 7.907908541 7.864923393 7.449482561 7.37239677 8.085989332 260650061 hrcA Stress Heat shock Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 8.125112112 7.886298436 7.689837658 7.844581336 7.798630428 8.096296711 7.576643968 7.447663215 7.769651343 52631734 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.170532117 8.09958733 7.648435216 7.068025115 7.814437345 7.745426358 7.523363806 7.439707541 7.702247419 26278822 narG Nitrogen Denitrification uncultured bacterium 7.868544246 7.843663699 7.815291842 7.745291856 7.564391429 7.949841006 7.844426692 7.821508095 7.653810259 116096556 pstB Stress Phosphate limitation Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 7.043286009 7.136388813 49240047 MFS_antibiotic Antibiotic resistance transporter Bartonella quintana str. Toulouse superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella quintana; 7.250154904 7.309454839 7.843297476 7.24396429 7.206549552 7.711030079 194348083 iro virulence Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 7.436648215 7.724319292 167951087 clpC Stress Protein stress Endoriftia persephone 'Hot96_1+Hot96_2' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Endoriftia;species:Endoriftia persephone; 7.342578815 7.146525152 7.451604298 7.400975868 7.15903079 27381192 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.380845776 7.507296378 7.336852301 6.831641927 7.262408258 7.420860251 7.061343674 7.353393835 121605017 Catechol Organic Remediation Aromatics Other aromatics Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 7.354071429 7.24544165 7.058111244 6.853197579 7.001224266 7.166010371 149782886 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 6.816672314 7.037543178 120325894 hly virulence hemolysin Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 7.61344972 7.368036244 7.245158407 7.238999901 7.059969035 7.665395649 7.395298408 7.433646365 32307979 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.544406269 7.986806904 8.096936527 7.771315454 7.714827588 8.111279348 7.435712405 7.540638831 126714306 oxyR Stress Oxygen stress Roseobacter sp. CCS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.530762926 7.472940902 7.399199048 7.173905362 7.853990501 7.596292087 7.221528862 121635315 Arylest Organic Remediation Aromatics Other aromatics Neisseria meningitidis FAM18 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria meningitidis; 7.691838178 7.474111633 7.532032913 6.958691872 7.529900059 7.917342097 7.645341005 7.309918079 7.363918953 157885102 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.592823955 7.472767706 7.278367996 7.619925304 7.699436327 8.074635416 7.898096783 7.13588377 7.392452564 170143520 ahpC Stress Oxygen stress Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 7.195521579 7.177512205 7.832537472 7.602406092 7.224648514 7.835125042 7.266188709 7.557898016 7.520232744 118602358 ArsC Metal Resistance Arsenic Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:Candidatus Ruthia magnifica; 7.145981603 7.171444377 253702701 cytochrome Energy process Energy process Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 7.163618109 7.356693776 6.856872104 7.414793906 7.281383147 7.13782156 70731603 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.787792267 7.332888633 7.405985437 7.161471956 7.221935631 7.721958801 7.484341321 7.19642822 7.378391531 117307079 amoA Nitrogen Nitrification superkingdom:Bacteria; 7.487463512 7.613274052 7.397868946 7.292789528 7.184128673 7.666110247 7.40213472 6.964992717 7.323033499 238884882 fnr Stress Oxygen stress Selenomonas flueggei ATCC 43531 7.063249642 7.230285975 189495255 hrcA Stress Heat shock Chlorobium phaeobacteroides BS1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 7.516908813 7.041290078 258405703 hly virulence hemolysin Desulfohalobium retbaense DSM 5692 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium;species:Desulfohalobium retbaense; 8.020636776 7.575208846 7.780764027 7.718239657 7.703201737 7.871355794 7.618510103 7.626338276 7.247303301 222438035 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 7.452991064 7.359161241 7.436874934 7.858115885 7.52497186 7.728262037 238597302 phenol_oxidase Carbon cycling Carbon degradation Lignin Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 8.359534202 8.498133765 8.232966577 8.321431213 8.215308507 8.338078349 8.430700158 8.4173728 8.283871681 144905794 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.295598081 7.07094839 7.131623379 7.554465115 255931857 amyA Carbon cycling Carbon degradation Starch Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 7.243880677 7.610872464 7.362845905 126719189 fnr Stress Oxygen stress Roseobacter sp. SK209-2-6 8.08067512 7.648198595 7.631057144 7.329859473 7.679845933 8.089095157 7.6728743 7.570702992 7.62998128 94972084 AceB Carbon cycling Carbon degradation others Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 7.281337516 7.68842236 8.173395049 7.301440666 7.687566192 7.806537432 7.89827086 8.030939087 170693330 pmdAB Organic Remediation Aromatics Others Burkholderia graminis C4D1M 7.306093606 7.344180458 7.559036093 7.540055631 7.518111481 7.98177058 7.433250517 7.394317634 7.449502424 241215877 AceB Carbon cycling Carbon degradation others Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 7.827921161 7.540069399 7.84307839 7.56946637 7.723426137 7.663376479 7.587105371 7.976634579 7.938267965 222454334 CopA Metal Resistance Copper Halorubrum lacusprofundi ATCC 49239 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 8.308822243 7.673586398 7.615410447 7.304773454 7.771539365 8.123133633 7.773772339 7.336045666 7.547639679 224017048 fnr Stress Oxygen stress Bacteroides coprophilus DSM 18228 7.779137064 7.754902634 7.48942864 7.646763789 8.155535139 7.951067168 8.185313051 7.963175565 8.204681803 171320495 tfdA Organic Remediation Aromatics Chlorinated aromatics Burkholderia ambifaria MEX-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 7.443120153 7.387853877 7.385247184 7.816020835 254389826 SMR_antibiotics Antibiotic resistance transporter Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 7.61344944 7.317495166 7.316985354 6.968954878 7.114266354 7.316056799 7.553477459 7.328264934 187919819 ahpF Stress Oxygen stress Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.394972224 7.297795223 7.029371832 7.051361036 7.541461811 260606365 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 7.594395297 7.598215044 7.426025617 6.812337298 7.515245756 7.599760871 7.18064822 7.672031535 126648726 sigma_24 Stress Sigma factors Algoriphagus sp. PR1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cyclobacteriaceae;genus:Algoriphagus; 7.224764653 7.172560993 29293344 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.454123651 7.404502845 6.8967542 7.704359153 7.561279237 7.579788465 7.30763071 7.386753665 167657004 obgE Stress Radiation stress Eubacterium siraeum DSM 15702 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium siraeum; 7.241272286 6.838017677 77378545 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.308201498 7.309142378 7.450112467 7.375474982 7.687018023 7.307979286 7.270836935 6.942969038 157402116 CopA Metal Resistance Copper Methanococcus maripaludis C6 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanococcaceae;genus:Methanococcus;species:Methanococcus maripaludis; 7.015914269 7.103239502 7.627465778 7.513068944 7.357016769 118592910 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 7.696490762 7.432755649 7.550233618 7.765234871 7.577877325 7.694267507 7.590752869 7.314795689 7.480012313 157369233 linB Organic Remediation Pesticides related compound Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 7.300537481 7.269247209 7.27940688 6.825091439 7.19791307 7.379583562 7.256686027 7.246585893 7.814968894 156235625 hrcA Stress Heat shock Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 7.615656547 7.305369775 7.294208507 7.143032139 7.223910726 7.552400765 7.169012662 7.104512671 7.399027028 209885826 pstB Stress Phosphate limitation Oligotropha carboxidovorans OM5 7.770873764 7.679856747 7.674936446 7.734474075 7.954301312 8.183145812 8.306734562 8.223781755 7.853003564 209486017 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.380370303 7.261008673 6.855212626 7.383309069 148981697 TerC Metal Resistance Tellurium Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 7.336729696 7.351624879 7.231990059 23494145 catB Organic Remediation Aromatics BTEX and related aromatics Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 7.164668729 7.136442886 7.111696988 6.874681568 7.386808533 7.06758046 7.305059244 186473234 ChrA Metal Resistance Chromium Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.977894382 7.783212501 7.514851909 7.678022082 7.649123782 8.20265918 7.719103014 7.664190307 7.454095774 118439399 nhh Organic Remediation Aromatics Nitoaromatics Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 7.845462409 7.766306648 7.524412844 7.720173212 7.795188413 7.73111646 7.666183098 7.566502763 7.247713828 20467215 mmoX Carbon cycling Methane Methane oxidation uncultured type I methanotroph superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae; 7.670975804 7.479823962 7.249151524 7.455810002 7.315692126 7.130421089 7.426171089 190343178 ppx Phosphorus Phosphorus utilization Candidatus Nitrospira defluvii superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Nitrospira; 7.303186923 7.777619142 8.094506336 7.79351465 7.962844434 8.085709203 8.200529869 7.875457526 260866064 dsrB Sulphur sulfite reductase Ammonifex degensii KC4 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Ammonifex;species:Ammonifex degensii; 7.531077463 7.224544854 6.925677662 7.340214886 7.751441603 7.311796655 7.207842339 7.317348134 258584767 hly virulence hemolysin Vibrio mimicus VM573 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 7.76685605 7.597566335 7.810578107 8.082649632 8.345685876 8.148200888 7.654883174 7.743308543 189199810 nahA Organic Remediation Aromatics Polycyclic aromatics Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7.238792244 7.165023393 7.20692227 6.789150865 7.289686856 91691216 nmoA Organic Remediation Aromatics Nitoaromatics Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.621431732 7.837546309 8.100412744 7.618645191 7.67243627 7.947800185 7.858126996 83853339 pcc Carbon cycling Carbon fixation Oceanicaulis alexandrii HTCC2633 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis;species:Oceanicaulis alexandrii; 7.65726631 7.394023348 7.128230719 7.402184735 7.792229506 7.555761096 7.378764536 77019718 pstB Stress Phosphate limitation Rhodococcus erythropolis PR4 7.32565669 7.324875341 7.577994226 7.138012645 7.522073921 7.754870285 7.364894842 7.304358424 133948814 Catechol Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 7.394561057 7.310305101 7.740688269 7.357020508 7.297734712 7.835900897 7.489648666 7.289946034 7.697311767 116743209 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.7957447 7.529177754 7.629833708 7.440327095 8.107447147 7.671998048 7.775729835 7.705308701 166030443 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Dorea formicigenerans ATCC 27755 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Dorea;species:Dorea formicigenerans; 7.308320369 7.112457026 7.288885197 6.745666321 6.498492512 7.615878606 7.132840394 6.79300298 7.155159996 157406278 nhh Organic Remediation Aromatics Nitoaromatics Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 7.850318493 7.503234009 7.513825679 7.310470507 7.699553308 7.769342463 7.800995226 7.926877201 1799532 nagG Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 7.841085925 8.196454623 8.205300727 8.280884745 8.086058662 7.878016882 76803774 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 8.196553024 8.043863246 8.135454283 7.538658257 7.742486597 7.952154283 7.98324994 7.872024297 8.06672909 114046494 iro virulence Shewanella sp. MR-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 7.287024691 7.171258115 7.900518466 7.920059742 7.611458088 8.076118522 7.690757587 7.668312458 8.018062759 209401908 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.377359634 7.238555628 7.935395626 7.518632227 7.140255328 7.923284432 7.0239739 6.771215372 217501990 gyrB other category gyrB Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 7.735468393 7.817938079 7.635784477 7.933761246 8.302549553 8.10294864 7.995651928 8.09658857 113954287 sigma_70 Stress Sigma factors Synechococcus sp. CC9311 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.339228699 7.355508722 7.354128183 7.181828976 7.238010982 7.234426189 99083067 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.495415731 7.016510055 7.106625615 6.84719989 6.792957741 7.475919597 6.873467044 6.88818623 172056787 amyA Carbon cycling Carbon degradation Starch Exiguobacterium sibiricum 255-15 7.679255466 7.423008514 7.451907135 110633336 SMR_antibiotics Antibiotic resistance transporter Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 7.499308279 7.73450387 7.210674334 7.296977628 7.911091476 7.692585308 7.822776842 7.470416038 7.639789574 3378416 xylF Organic Remediation Aromatics BTEX and related aromatics Novosphingobium aromaticivorans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 7.145381238 7.130525893 7.249739988 7.716346579 7.400515196 7.216276454 7.444818944 7.849838382 121583395 TerZ Metal Resistance Tellurium Polaromonas naphthalenivorans CJ2 7.599843637 7.436881049 7.224793895 7.008972687 7.065500291 7.636443923 7.26945523 7.053339081 7.302475348 49609584 xylA Carbon cycling Carbon degradation Hemicellulose Erwinia carotovora subsp. atroseptica SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 7.793441418 7.524236236 7.896844212 7.857747748 7.737313765 7.475404782 7.470698768 186471716 phtA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.30987856 7.465951675 7.16265511 7.14846678 6.835218301 7.398064204 86567176 ChrA Metal Resistance Chromium Frankia sp. CcI3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 7.923367771 7.883980247 7.573813579 7.560244844 7.918555034 7.140276007 7.435795225 23492471 vanA Carbon cycling Carbon degradation Others Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 7.310523258 7.19790543 7.187827211 119958162 akbF Organic Remediation Aromatics BTEX and related aromatics Mycobacterium vanbaalenii PYR-1 7.257362897 7.555605475 7.464566722 7.363717087 7.531475231 7.866239322 7.431345382 7.732354246 111151378 nmoA Organic Remediation Aromatics Nitoaromatics Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 7.404069555 7.106995003 7.222287825 7.334632324 7.121713492 7.441678895 7.341806607 7.384536841 164614083 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.013872682 7.120009232 7.107736253 6.926424689 7.228914665 216773 dehH Organic Remediation Chlorinated solvents Moraxella sp. B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Moraxella; 7.722847412 7.49810563 7.42394678 7.195738113 7.669123349 7.75963201 7.598002259 7.545150493 7.601338758 220029055 T4_recomb_endonuclease Bacteria phage REPLICATION Enterobacteria phage JSE order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.035367384 6.658509524 6.937172341 94496327 oxyR Stress Oxygen stress Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.184680837 8.095866532 7.691254235 7.613275555 8.080134697 8.107982156 8.029353645 7.993013052 7.882146693 156527289 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Vibrio harveyi ATCC BAA-1116 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 7.182980018 6.844160317 7.356329832 39578083 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.161934869 7.701405162 7.503676045 6.832890663 7.654171916 7.041957747 7.394147948 166029811 CopA Metal Resistance Copper Dorea formicigenerans ATCC 27755 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Dorea;species:Dorea formicigenerans; 7.724680385 7.340689475 7.281688442 7.177680323 7.138809167 7.532537388 7.401124117 7.410929698 7.202797012 183220771 pimF Organic Remediation Aromatics Aromatic carboxylic acid Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira biflexa; 7.336378914 7.288601117 7.141010266 7.325836879 7.063696728 7.374960173 7.413603534 7.311119758 228610682 bphF1 Organic Remediation Aromatics Polycyclic aromatics Bacillus cereus MM3 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 6.826533768 6.925179527 217969707 fnr Stress Oxygen stress Thauera sp. MZ1T 7.731650659 7.654252155 7.167447011 6.865981063 7.454274443 7.678430025 7.306477072 7.404640236 7.220029285 256780510 MFS_antibiotic Antibiotic resistance transporter Streptomyces hygroscopicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces hygroscopicus; 7.439227391 7.779496758 7.929603665 7.164641125 7.725330091 7.857983445 7.519694133 7.988522622 7.356156948 37520850 linB Organic Remediation Pesticides related compound Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 7.748636189 7.616191261 7.744007996 7.364060437 7.464604745 7.68161254 7.313767367 7.523007638 254832239 proV Stress Osmotic stress Listeria monocytogenes 10403S superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria monocytogenes; 7.248464493 7.369581732 7.051018285 7.072505496 7.371037784 7.451706426 7.406941327 7.237809986 7.14149354 254431172 ureC Nitrogen Ammonification Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 8.14167871 8.154348872 7.800594918 7.640151807 7.580906809 7.741548207 7.622085917 7.595613204 7.518380014 167588467 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia ubonensis Bu superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ubonensis; 7.431112972 7.555337465 7.500884738 7.23650357 7.044840256 7.589367903 7.509889846 7.602140963 7.310683102 257203477 clpC Stress Protein stress Roseburia intestinalis L1-82 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia intestinalis; 7.488241329 7.094357441 6.977316944 6.784748675 6.71816804 7.617577478 7.207097867 7.138927231 193089408 nitA Organic Remediation Aromatics Other aromatics Chloroherpeton thalassium ATCC 35110 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chloroherpeton;species:Chloroherpeton thalassium; 7.740171558 7.790767623 7.5618527 7.249112774 7.547981567 7.945417635 7.729680686 7.399556896 7.592961174 148628414 nahA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 7.210830833 7.234533445 6.990972723 7.070202569 7.710800855 72162094 nmoA Organic Remediation Aromatics Nitoaromatics Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 7.241409715 7.156845881 6.914675649 7.351720984 91978108 CopA Metal Resistance Copper Rhodopseudomonas palustris BisB5 7.76679032 7.737025963 7.474496954 7.236997482 7.726478214 7.719422161 7.708163478 7.377744884 7.647462138 254475115 grpE Stress Heat shock Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.982707138 7.934770403 7.872111476 7.399137807 7.77880847 7.627437328 7.767592784 151563041 ahpC Stress Oxygen stress Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 7.481324364 7.408650935 7.283889755 7.195598567 7.468633901 114193779 endoglucanase Carbon cycling Carbon degradation Cellulose Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.916688209 8.531935786 8.066926492 7.637099368 8.477706378 8.041175573 8.025525193 8.332173349 217987643 pstB Stress Phosphate limitation Bacteroides eggerthii DSM 20697 7.085344764 7.011619612 7.112258609 6.828070594 7.651362808 7.061448675 6.868095562 147886176 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 7.656607386 7.439672317 7.320033134 7.941650792 7.745657403 8.109014658 7.482948042 7.767771713 7.804071125 219947767 pheA Organic Remediation Aromatics Other aromatics Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 7.994423955 7.945410941 7.33181828 7.761742486 7.759594687 7.737554895 7.434630288 7.353994789 7.647748554 39977317 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 7.816015837 7.97307522 7.513214211 13898429 dsrA Sulphur sulfite reductase uncultured phenanthrene mineralizing bacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 8.066771333 7.98097482 7.847880745 7.320776789 8.120701844 8.135484728 8.023421122 7.515528491 7.922178834 71555648 Arylest Organic Remediation Aromatics Other aromatics Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 7.257309266 7.308914564 7.164146033 7.409875427 7.056053451 7.516661085 118470071 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 7.9348989 7.572292852 7.822164314 7.434701921 7.702046633 8.052049586 7.357696837 7.741254865 89518012 alkB Organic Remediation Other Hydrocarbons Flavobacteria bacterium BBFL7 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria; 7.121978007 7.25163715 7.218119801 6.780183401 6.721798967 7.343176747 167759296 tutFDG Organic Remediation Aromatics BTEX and related aromatics Clostridium scindens ATCC 35704 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium scindens; 7.023254418 7.224737545 7.100546391 6.838449939 7.267338123 266625732 hrcA Stress Heat shock Clostridium hathewayi DSM 13479 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 7.377644783 7.233627084 7.113925081 6.908752625 7.374528137 218249111 cadBD Metal Resistance Cadmium Cyanothece sp. PCC 8801 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.252784639 7.213468564 7.100997163 6.720883095 6.767125331 7.529269623 270276196 obgE Stress Radiation stress Bifidobacterium gallicum DSM 20093 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 7.391339174 7.680087721 7.850952926 7.235091972 7.62442249 7.899771962 7.649838245 7.705092744 7.516488872 254384162 SMR_antibiotics Antibiotic resistance transporter Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7.346370304 7.385148799 7.285004209 7.276628016 7.286495174 7.467690159 7.325748195 7.472640845 160897573 fnr Stress Oxygen stress Delftia acidovorans SPH-1 8.003944887 8.005251386 7.953194312 8.14313062 8.44567975 7.891954237 8.409828507 8.233394976 8.212857519 157679107 rubisco Carbon cycling Carbon fixation Acidithiobacillus thiooxidans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus; 7.515217605 7.548656159 7.756825955 7.503371056 7.614015429 7.334369449 7.543254476 56478646 xylC Organic Remediation Aromatics BTEX and related aromatics Azoarcus sp. EbN1 8.011727851 7.975387493 7.913106069 7.51009487 7.760017216 7.745541349 7.625035782 8.295778784 116093731 glnA Stress Nitrogen limitation Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 7.241821367 7.297402217 7.313229347 7.100708306 7.152528369 7.36474251 241319382 MFS_antibiotic Antibiotic resistance transporter Neisseria flavescens SK114 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria flavescens; 7.135094455 7.279838907 7.61030984 7.400495446 7.486901728 7.422739868 6.671262502 91682196 fnr Stress Oxygen stress Rhodopseudomonas palustris BisB5 7.453075457 7.449346983 7.079701816 6.999307958 7.357406147 7.25788717 7.337653932 120401878 atzA Organic Remediation Herbicides related compound Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.048127826 8.204454811 8.215734407 8.010734937 8.592833705 8.16992419 8.27197708 8.019628094 8.572486174 84787750 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Erythrobacter litoralis HTCC2594 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 7.474957743 7.317377664 7.260238967 7.77187887 7.422762274 7.311398901 7.637647223 7.917856093 118670584 gyrB other category gyrB Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.880679203 7.814208589 7.505492504 7.882214874 7.761592548 7.798637745 7.481270913 7.640378384 7.600395078 145221225 nahA Organic Remediation Aromatics Polycyclic aromatics Mycobacterium gilvum PYR-GCK 7.590064004 7.680180615 7.585455021 7.380017114 7.546670731 8.062120468 88806433 amyA Carbon cycling Carbon degradation Starch Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 7.41510299 7.616616792 7.26405276 7.28650218 8.012278158 7.49111787 7.427676283 49610658 CopA Metal Resistance Copper Erwinia carotovora subsp. atroseptica SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 7.995124884 8.365066085 8.158685693 7.463594594 8.292141856 7.979005914 8.059137218 8.333766852 206595436 alkK Organic Remediation Others Ralstonia solanacearum IPO1609 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 8.630923828 8.288407757 7.785167323 8.310074981 8.356531899 8.537372154 8.199424275 145240623 phenol_oxidase Carbon cycling Carbon degradation Lignin Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.226928065 7.27932897 7.208593457 6.644737126 7.416183869 211906069 mcrA Carbon cycling Methane Methane production uncultured archaeon superkingdom:Archaea; 7.318990304 7.279901206 7.256219361 240168295 glnA Stress Nitrogen limitation Mycobacterium kansasii ATCC 12478 7.944646678 7.776211325 7.662422179 7.784122742 7.424072631 8.138884304 7.238724055 7.57880067 7.454100036 209869144 dsrB Sulphur sulfite reductase uncultured marine bacterium 7.125750504 6.683066178 134293473 fnr Stress Oxygen stress Burkholderia vietnamiensis G4 7.765853774 7.827895356 7.245820794 7.94124082 7.665758869 7.738650381 209884194 fnr Stress Oxygen stress Oligotropha carboxidovorans OM5 7.358057904 7.379851596 7.366759264 7.643392213 260430987 pcc Carbon cycling Carbon fixation Silicibacter lacuscaerulensis ITI-1157 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria lacuscaerulensis; 7.515300614 7.841478929 7.687200273 7.535447951 6.978903181 7.443364467 7.591370503 7.798402933 25990955 exoglucanase Carbon cycling Carbon degradation Cellulose Piromyces sp. E2 superkingdom:Eukaryota;kingdom:Fungi;phylum:Neocallimastigomycota;class:Neocallimastigomycetes;order:Neocallimastigales;family:Neocallimastigaceae;genus:Piromyces; 8.206190749 7.965057657 8.503521752 7.653238108 7.926176327 7.764786636 8.46450513 36783554 pulA Carbon cycling Carbon degradation Starch Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 7.205401633 7.15517213 7.190937059 6.599364193 6.64752283 7.555851931 7.01197977 6.889297557 167037289 atzA Organic Remediation Herbicides related compound Thermoanaerobacter pseudethanolicus ATCC 33223 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Thermoanaerobacter;species:Thermoanaerobacter pseudethanolicus; 7.102287981 7.014697755 6.828184215 7.141794076 7.132754716 7.154607263 121530665 ArsC Metal Resistance Arsenic Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 7.352698776 7.610998988 7.913570809 7.133540835 7.706746157 7.532101315 7.434187045 7.156006607 7.488795706 197929084 mannanase Carbon cycling Carbon degradation Hemicellulose Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 7.243626282 6.959692358 6.94278726 6.905343375 184196454 atzC Organic Remediation Herbicides related compound Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.174611635 7.365638604 6.897812792 7.834303803 7.219221361 7.070509913 7.047154895 118468557 vdh Carbon cycling Carbon degradation Others Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 7.472238146 7.472327945 7.650395128 7.608052857 8.083347095 7.909502805 8.000647564 7.895750911 8.026849138 50084865 pcaG Organic Remediation Aromatics Other aromatics Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 7.951837363 7.574742247 7.406642897 6.967067264 7.353683635 7.918555034 7.632356224 7.219982976 7.204993305 119955831 pcc Carbon cycling Carbon fixation Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 7.787003061 7.81911047 7.402579345 7.747672808 7.909420783 7.717937864 7.657925124 7.819837514 126014220 trzA Organic Remediation Herbicides related compound Staphylothermus marinus F1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Staphylothermus;species:Staphylothermus marinus; 7.380977972 7.069138099 7.030944675 110648691 ureC Nitrogen Ammonification Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 7.319337575 7.189736 7.274116681 7.501045048 7.100714811 7.389476089 7.342975403 7.286895857 83778586 glnA Stress Nitrogen limitation Clostridium beijerinckii 7.017071403 7.0871955 7.182607567 83361863 ZntA Metal Resistance Zinc Rhodobacter sphaeroides ATCC 17025 8.366893041 8.457857813 7.827933369 8.687831697 8.675557561 8.268432483 21239749 BMO Organic Remediation Other Hydrocarbons Pseudomonas butanovora superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 7.509669478 7.55136453 7.623343449 6.93279286 7.303111871 7.351676776 7.67360304 7.551989512 194348351 CopA Metal Resistance Copper Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 7.488934409 7.752340187 7.270751785 7.466883612 7.715500505 7.630183305 7.755559621 149203618 cbdA Organic Remediation Aromatics Chlorinated aromatics Roseovarius sp. TM1035 8.137320674 8.550050826 8.255189432 8.020351264 8.58022198 8.181863489 8.267242057 8.668000639 213583157 ppx Phosphorus Phosphorus utilization Salmonella enterica subsp. enterica serovar Typhi str. E98-0664 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 7.544943192 7.538487976 7.41920996 7.414390894 7.247849487 7.70671586 7.270720846 7.200697103 114308718 atzC Organic Remediation Herbicides related compound Nitrosomonas eutropha C91 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas eutropha; 7.671897264 7.480346763 7.369373226 7.032496515 7.378798499 160346438 CadA Metal Resistance Cadmium Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 7.962046841 8.017887243 7.589698917 7.70186432 7.607863778 7.6304783 7.555246187 7.468758439 28410331 pcc Carbon cycling Carbon fixation Tropheryma whipplei TW08/27 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;genus:Tropheryma;species:Tropheryma whipplei; 7.425640612 7.272822661 88819827 sigma_24 Stress Sigma factors Pseudoalteromonas tunicata D2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas tunicata; 6.893199171 6.842391185 88177761 tftH Organic Remediation Aromatics Chlorinated aromatics Chaetomium globosum CBS 148.51 7.165978357 7.239407548 7.146351872 7.11009032 7.575640824 7.263192806 7.522515317 14317894 contractile_tail_sheath_protein Bacteria phage STRUCTURAL Enterobacteria phage RB42 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.077685647 7.266681789 7.139260773 7.091807872 6.825417595 82716369 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.442871528 8.009809468 7.626240631 8.107347713 7.806117076 7.749341065 7.969383291 8.010498478 150955341 TehB Metal Resistance Tellurium Klebsiella pneumoniae subsp. pneumoniae MGH 78578 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 7.229868015 7.060737023 89352828 phn Organic Remediation Herbicides related compound Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 7.911009172 7.736964324 7.759184665 7.715718781 7.746051752 7.54926466 7.865576763 227949986 hly virulence hemolysin Meiothermus ruber DSM 1279 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 7.58598737 7.858691046 224520874 mannanase Carbon cycling Carbon degradation Hemicellulose Bacteroides cellulosilyticus DSM 14838 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 7.541576581 7.602028755 7.61225003 7.503452084 8.166928309 7.536795401 8.362893014 7.931073638 7.680424925 133911774 chnB Organic Remediation Other Hydrocarbons Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 8.271120881 8.411961628 8.098939584 7.815880167 8.153835579 8.19610679 8.282797897 8.465940438 219847711 hly virulence hemolysin Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 7.505467271 7.816622634 7.970948712 7.30977602 7.886859559 7.907858579 7.632165673 7.580738255 7.493837007 167628363 ppk Phosphorus Phosphorus utilization Heliobacterium modesticaldum Ice1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Heliobacteriaceae;genus:Heliobacterium;species:Heliobacterium modesticaldum; 7.423470508 7.538418473 7.262504103 7.39414533 7.630041104 150836927 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Marinomonas sp. MWYL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 6.860626848 7.152409538 7.452999892 7.200971918 7.000371518 7.525013982 7.184806066 7.025339237 7.510478015 163259941 ahpC Stress Oxygen stress Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 7.670206881 7.94075791 7.773552701 7.143642216 7.796373589 7.573099398 7.389696213 7.477402144 7.750596447 212547034 nmoA Organic Remediation Aromatics Nitoaromatics Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.013530767 7.226104344 7.06359318 7.013496115 6.715306514 7.537073706 6.794501597 7.172587012 6.971515021 67540968 glnA Stress Nitrogen limitation Aspergillus nidulans FGSC A4 7.779421606 7.700099922 7.483717793 7.455632491 7.474893514 7.6675256 7.311207908 7.067688259 7.596098652 256007413 gyrB other category gyrB Acidimicrobium ferrooxidans DSM 10331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Acidimicrobiales;family:Acidimicrobiaceae;genus:Acidimicrobium;species:Acidimicrobium ferrooxidans; 6.975835966 7.418271634 7.704781352 7.515755194 7.18052981 7.886076585 7.166035458 7.238545593 7.82252591 253510222 cap virulence capsule Helicobacter canadensis MIT 98-5491 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter canadensis; 7.133527516 6.751676322 6.594780696 7.240984982 238877403 hly virulence hemolysin Eubacterium rectale ATCC 33656 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium rectale; 7.018696048 7.250533422 7.146041408 6.90776874 7.301513168 7.387322549 7.356191382 7.340747272 7.467805221 150032754 fnr Stress Oxygen stress Sinorhizobium medicae WSM419 7.678809668 7.503075597 7.479260233 6.98585984 7.63356926 7.394980204 7.321083779 7.160959561 7.422442388 62906756 dsrA Sulphur sulfite reductase uncultured prokaryote 8.401997784 7.524674004 8.081087249 8.448122159 8.064413533 8.264599117 8.068682112 8.156185958 193222646 Catechol Organic Remediation Aromatics Other aromatics Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 7.412470143 7.953310219 7.579814416 7.262581925 7.492152283 7.487895991 7.677511466 7.076856295 58422515 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.548234758 7.619338788 7.487420829 7.426406944 7.564621522 7.844891206 7.599815702 7.585294569 253569127 ara Carbon cycling Carbon degradation Hemicellulose Bacteroides sp. 1_1_6 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 7.641738048 7.270275307 7.303223548 118728500 endoglucanase Carbon cycling Carbon degradation Cellulose Clostridium cellulolyticum H10 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium cellulolyticum; 7.584840588 7.471261016 7.350695563 7.453191143 7.962699034 7.342146172 7.082689499 39578181 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.815781027 7.954037432 7.815162597 8.069449848 8.065679044 8.036400343 8.048003718 8.018766054 77974242 Arylest Organic Remediation Aromatics Other aromatics Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 7.83075639 7.899447368 7.879674023 7.452463332 8.071967571 7.968806498 7.753543275 7.792621192 7.877302193 148572763 nitA Organic Remediation Aromatics Other aromatics Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 7.252827469 7.058780428 7.321416749 7.266540104 170141228 tfdA Organic Remediation Aromatics Chlorinated aromatics Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 7.901580463 7.697530002 7.838925492 7.616169127 7.630287504 196114420 narH Stress Oxygen limitation Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 7.346764502 7.787054797 7.923679802 7.887717524 7.77268151 8.074751776 7.949223922 7.844769765 118731612 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.629682936 7.442312345 7.157962297 7.643321544 7.924000822 7.49460339 7.233336742 218273880 nplT Carbon cycling Carbon degradation Starch Roseburia intestinalis L1-82 7.135258894 7.29968567 7.4527514 7.010135031 7.03837573 7.044103814 7.141183861 19909599 gyrB other category gyrB Halomonas halmophila superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 7.52798048 7.44498999 7.612664389 7.371824373 5578704 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas xenophaga superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 7.397707523 7.471958089 7.209697606 6.971864249 7.081241577 7.58806269 15055579 dsrA Sulphur sulfite reductase Desulfobotulus sapovorans superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobotulus; 7.369735773 7.739320867 7.7217155 7.663660707 7.929088894 7.742859536 8.203859056 8.090804348 7.879505037 145553514 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 7.222854695 6.928495585 7.693408285 7.254119911 7.740860589 7.608637336 7.374728657 7.64200283 91715388 cda Carbon cycling Carbon degradation Starch Shewanella denitrificans OS217 6.861696509 6.916405607 6.7019257 6.723304024 7.552827503 206677940 fnr Stress Oxygen stress Rhodobacterales bacterium HTCC2083 7.660267679 7.572795536 7.359756661 6.878538072 7.28720202 7.406403303 7.000252977 7.246625536 7.577494618 114538155 pcc Carbon cycling Carbon fixation Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 7.659606547 7.621914364 7.71310733 7.437162187 7.686715035 8.174735705 7.905548251 7.875479879 8.065475698 220933858 oxyR Stress Oxygen stress Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 7.302338118 7.48444374 7.866363952 8.195446958 7.548933864 8.103769844 7.57330593 7.428222862 7.719331215 2746667 ppk Phosphorus Phosphorus utilization Neisseria meningitidis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria; 7.486389296 7.463431833 7.542007151 7.778403399 7.407165388 7.962198244 7.819138838 7.69808544 7.615997882 98978526 gyrB other category gyrB Sphingopyxis alaskensis RB2256 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 7.581433167 7.555809545 7.506330679 7.643281492 7.845226009 7.928614419 7.679344242 7.654065757 90023377 pnbA Organic Remediation Aromatics Nitoaromatics Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 7.703517245 7.237005811 7.288897709 6.960997779 6.710856388 7.542120079 7.258441088 7.358286828 120611683 Arylest Organic Remediation Aromatics Other aromatics Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 7.427321665 7.142435065 7.791592301 7.82319182 7.459139197 7.677486947 7.392613058 7.617480261 209573976 phn Organic Remediation Herbicides related compound Acidithiobacillus thiooxidans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus; 7.410673523 7.482497682 7.40135393 6.959806939 7.607699854 7.052231371 7.237090044 56963422 hrcA Stress Heat shock Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 7.102978359 7.007618705 6.887214709 217991996 sigma_70 Stress Sigma factors Bacteroides pectinophilus ATCC 43243 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides pectinophilus; 7.656575682 7.338051241 7.347617992 7.173784293 7.332715817 7.877257249 7.375423043 7.264285428 133739206 ophC Organic Remediation Aromatics Aromatic carboxylic acid Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 7.51121699 7.296723707 7.316165292 7.943878042 7.553202588 7.636169322 209523577 sigma_70 Stress Sigma factors Arthrospira maxima CS-328 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira maxima; 7.924631134 7.739266094 7.394117554 8.101790054 7.823309565 8.140043708 7.654253161 7.636906919 7.558191718 66571688 gyrB other category gyrB Xanthomonas campestris pv. campestris str. 8004 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 7.69442318 7.572967347 8.091618389 7.090466909 7.792494201 7.62176739 7.430527616 7.588862388 226946840 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 7.921222828 7.659128112 7.786559325 7.370744303 7.961651606 7.874950433 7.811861585 7.59160637 7.623893562 150273017 Al Metal Resistance Aluminum Bacteroides capillosus ATCC 29799 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides capillosus; 7.823987212 7.655194884 7.820232064 7.192706885 7.918171929 7.694492052 8.131670978 7.666615627 241366346 AceA Carbon cycling Carbon degradation others Acidovorax delafieldii 2AN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax delafieldii; 7.070118605 7.407955821 7.451839154 7.361482191 7.54975364 7.338102626 7.293646404 85706531 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.520180624 7.489744246 7.59642227 7.685061809 7.390792239 8.027837686 7.743490149 7.529248614 7.121274407 94471297 narG Nitrogen Denitrification uncultured bacterium 6.902819689 7.098560741 206568323 merP Metal Resistance Mercury Klebsiella pneumoniae 342 7.817341398 7.615656632 7.290207314 7.667685501 7.643878184 7.895885489 7.707780747 7.417754616 7.457445994 119956543 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.288657509 8.61226771 8.30419833 8.195262556 8.728502191 8.695959615 8.575287123 8.698036669 8.549299663 108781097 TerZ Metal Resistance Tellurium Yersinia pestis Antiqua superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia pestis; 7.690871056 7.9338043 7.796066233 8.00873753 8.472125599 8.079647588 7.898865167 78514754 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.068821686 6.988084674 66043921 CopA Metal Resistance Copper Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 8.105153738 7.713313579 7.57792727 7.988714192 8.041283418 7.977281975 7.766029785 7.54876153 7.538787773 145234699 ara_fungi Carbon cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.692085423 7.302483629 7.514901909 6.924159659 7.513376237 7.588617682 7.19457519 7.466720112 7.564507002 225027629 clpC Stress Protein stress Eubacterium hallii DSM 3353 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium hallii; 7.29706215 7.234589977 6.926856719 7.662991109 7.187173577 7.286800592 163803403 sigma_32 Stress Sigma factors Vibrio sp. AND4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.800143637 7.778803111 7.51299367 7.573511977 8.107943135 7.731377465 7.792233579 7.878046886 7.425374758 268592308 pstB Stress Phosphate limitation Providencia rettgeri DSM 1131 6.956346755 6.99874061 6.77013889 7.212510316 50541877 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.76744098 7.554358131 7.650545882 7.51130063 7.492275974 7.743634781 7.365401888 7.589250659 78694161 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.648859591 7.749307739 7.602895834 7.117839937 7.486779139 7.684349832 7.46509645 7.493605675 239806424 sigma_24 Stress Sigma factors Geobacillus sp. WCH70 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.139962699 6.909798756 6.709342642 7.41338721 6978960 norB Nitrogen Denitrification Alcaligenes faecalis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes; 7.832188852 8.032954315 7.956976779 8.083576735 7.960734367 8.14094727 7.649588628 8.002812656 8.188918346 194016398 ChrA Metal Resistance Chromium Bacillus pumilus ATCC 7061 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pumilus; 6.939704124 7.126196681 7.791909574 7.742622853 7.478497327 7.930116426 7.75364041 7.514036849 7.732083214 193161104 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.143190341 7.254051767 7.766074143 7.052819017 6.983141643 7.455025674 12725265 glnA Stress Nitrogen limitation Lactococcus lactis subsp. lactis Il1403 7.568218069 7.345568662 7.2292961 7.23522864 7.315713624 7.215146831 7.495640049 193201373 helicase_family_4 Bacteria phage REPLICATION Klebsiella phage K11 7.585609976 7.586779299 7.473639597 7.620949041 7.827130161 7.466798165 7.539812865 255277576 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.387819308 7.44842762 169797798 vanA Carbon cycling Carbon degradation Others Acinetobacter baumannii AYE superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 7.380660501 7.159502438 6.960417312 257804504 srt virulence surface protein Enterococcus gallinarum EG2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus gallinarum; 7.367500147 6.995741807 7.117455608 7.092545841 7.284266605 7.244134613 7.310230603 7.044023872 255264690 glnA Stress Nitrogen limitation Thalassiobium sp. R2A62 7.587849176 7.525612491 7.377063614 7.617565613 8.027281087 8.139711195 7.582507777 7.653907295 171912865 ppx Phosphorus Phosphorus utilization Verrucomicrobium spinosum DSM 4136 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Verrucomicrobium;species:Verrucomicrobium spinosum; 7.435415543 7.688150841 7.689350263 7.716081027 6.902316536 8.052562601 7.471677385 7.159546315 7.7510084 240857049 AceA Carbon cycling Carbon degradation others Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.212358302 7.029000968 6.73306654 7.37905297 6.779534742 6.90173445 217505206 exaA Organic Remediation Chlorinated solvents Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 7.41179455 7.319136918 7.370184996 116333937 hrcA Stress Heat shock Lactobacillus brevis ATCC 367 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus brevis; 7.160534741 7.590685028 7.292069766 7.126611994 7.103817989 124516733 LPS_heptosyltransferase_EPS Bioleaching EPS Leptospirillum sp. Group II UBA 7.279594262 7.101535122 7.105733082 6.703510707 7.334293239 7.112893643 6.898716757 7.113928253 58336894 MFS_antibiotic Antibiotic resistance transporter Lactobacillus acidophilus NCFM superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus acidophilus; 7.037769709 7.112548194 170110953 phenol_oxidase Carbon cycling Carbon degradation Lignin Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 7.656837508 7.65277773 7.357341193 7.557791536 7.478779977 7.827499583 7.442080531 7.302418056 7.555314122 259910172 vanA Carbon cycling Carbon degradation Others Erwinia pyrifoliae Ep1/96 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia pyrifoliae; 7.188866831 7.284387964 6.982841593 6.682752023 7.268014765 222081823 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.387422289 7.376685626 7.200258961 7.257804824 7.66251128 7.817635456 7.76089552 7.238329764 7.366321227 163755352 amyA Carbon cycling Carbon degradation Starch Kordia algicida OT-1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Kordia;species:Kordia algicida; 7.944993196 7.984145279 8.201956639 7.922655388 8.273465425 8.25758367 8.220161008 8.392768881 8.193227048 238868681 phoB Stress Phosphate limitation Edwardsiella ictaluri 93-146 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella ictaluri; 7.930869191 8.009999235 7.860949959 7.991351745 8.048366485 8.220895162 8.152546768 8.085717984 77969006 TerD Metal Resistance Tellurium Burkholderia sp. 383 7.574422666 7.37898287 7.226620323 7.874753915 7.197490459 7.776049305 7.445628364 7.268380719 109660123 ureC Nitrogen Ammonification unidentified bacterial contaminant superkingdom:Bacteria; 7.171274796 6.991088045 7.269164776 7.088798386 150274182 ArsC Metal Resistance Arsenic Bacteroides capillosus ATCC 29799 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides capillosus; 7.97221685 7.798825839 7.661424278 7.650027675 7.758723454 7.796809728 8.091207889 7.765943248 7.49481033 56679727 phdCI Organic Remediation Aromatics Polycyclic aromatics Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 7.985606509 7.87381291 7.596141302 7.993503737 7.884094728 7.91190367 7.708979181 7.877211643 7.717467613 88799189 amyA Carbon cycling Carbon degradation Starch Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 8.123085104 7.771134581 7.673306683 7.98134303 7.798829052 8.273926931 7.494059977 7.522538442 7.45085313 209871801 ChrA Metal Resistance Chromium Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 7.360081893 7.173875483 7.194241398 7.293459105 7.208856817 7.820069556 7.04584886 7.121027159 7.371548722 78698973 nmoA Organic Remediation Aromatics Nitoaromatics Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.479312701 7.21258425 6.87034959 7.1232709 6.834923324 269104073 pilin virulence pilin Photobacterium damselae subsp. damselae CIP 102761 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium damselae; 7.27444395 6.888667571 6.983447192 24986363 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.829743736 7.450295804 7.620517505 7.025958252 7.47792073 148750447 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.064154474 8.366575852 8.110302102 8.210372046 8.621217287 8.516675436 8.189454915 8.026174532 89350173 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 7.811968228 7.621076734 7.658223028 7.646556746 7.451973587 7.863479724 7.459221714 7.793484243 7.636518079 2897599 linB Organic Remediation Pesticides related compound Corynebacterium sp. superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium; 7.244183332 7.200291743 7.144891618 6.832781457 7.002090934 7.511043969 7.109734694 6.838404966 7.358487279 27377220 fnr Stress Oxygen stress Bradyrhizobium japonicum USDA 110 7.311231944 7.254947472 7.434797623 7.051439871 6.803060092 6.996563992 6.97539343 94985388 AceA Carbon cycling Carbon degradation others Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 7.877190758 7.787019974 7.860184917 7.616854855 7.87515628 7.832034121 7.957268026 7.911278124 270510418 sigma_24 Stress Sigma factors Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 7.941151665 7.499472393 7.595128189 7.482314665 7.979457405 7.999132278 7.841389142 8.014888191 7.886402211 27356082 pnbA Organic Remediation Aromatics Nitoaromatics Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.783813716 7.723212398 7.414705162 7.708659246 7.776985158 7.627646118 7.831386556 13591776 alkB Organic Remediation Other Hydrocarbons Nocardioides sp. CF8 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 7.695612314 6.993726128 7.347187634 7.661365137 7.661966352 7.551833839 7.58666372 124294989 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.542950393 7.543795607 7.201396187 7.501666283 7.575080295 7.125073227 7.52261697 85669428 TerC Metal Resistance Tellurium Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.516172387 7.162457283 7.305715989 7.03806907 6.740579298 7.692609006 6.964921872 7.013217378 7.190876209 84705048 fnr Stress Oxygen stress Parvularcula bermudensis HTCC2503 7.62025454 7.951913264 7.777583503 7.735295515 8.056280225 7.880132222 8.34014604 8.201208671 221535658 sigma_32 Stress Sigma factors Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 7.757073502 8.213675485 7.56296784 7.97249082 8.067015003 8.052719088 25026977 alkK Organic Remediation Others Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 7.731007188 7.4959734 7.338312162 7.531397524 7.318317754 7.649767834 7.024864545 7.216295761 133778532 endochitinase Carbon cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 7.329268694 6.975740128 7.202884704 6.667110766 7.028828779 7.529205031 72162782 srt virulence surface protein Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 7.561793452 7.372587503 7.215674594 7.262201874 7.218077251 7.542905292 7.39515574 7.499624883 7.047371543 189432438 ChrA Metal Resistance Chromium Bacteroides coprocola DSM 17136 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides coprocola; 7.080484222 7.307793796 6.789724752 134058158 phytase Phosphorus Phosphorus utilization Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 7.918460805 7.768711328 7.844325127 7.223766273 7.880360255 7.612318432 8.029419621 7.610586981 7.916085671 86605667 fnr Stress Oxygen stress Synechococcus sp. JA-3-3Ab 7.638806053 7.548099493 7.630953128 7.220151784 7.813374553 7.769996621 7.940486517 7.623433163 157804733 APS_AprA Sulphur adenylylsulfate reductase Thiocapsa roseopersicina 7.505509072 7.233822259 6.979196168 7.658701096 124488309 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.178136434 7.212500852 7.388137469 7.278362595 7.608415794 7.75641182 7.377957612 7.594561213 7.654049132 167668933 atzA Organic Remediation Herbicides related compound Anaerotruncus colihominis DSM 17241 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Anaerotruncus;species:Anaerotruncus colihominis; 7.66000841 7.597733455 7.178387447 7.615605329 7.80944936 7.727746213 7.53985426 8.312447322 149754536 pstB Stress Phosphate limitation Dorea longicatena DSM 13814 7.234283627 6.983332927 40882243 alkK Organic Remediation Others Neurospora crassa superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora; 7.261924184 7.239557081 6.783455948 7.341204784 73542694 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.516388404 7.203140742 7.116984355 94314069 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 7.689657493 7.47265072 7.660850944 7.613495775 7.742288274 7.775164596 7.89004266 7.563739875 86749822 nhh Organic Remediation Aromatics Nitoaromatics Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.208592575 8.171921071 8.265447621 7.918200635 8.389396433 7.91781212 8.53063196 8.74957017 7.826666206 134095261 sigma_24 Stress Sigma factors Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 7.666879447 6.977868492 153888450 CadA Metal Resistance Cadmium Ralstonia pickettii 12D 7.47044231 7.397065375 7.261815558 7.195324994 7.396811509 7.748548713 7.460202777 7.770390766 7.739776949 119670557 xylJ Organic Remediation Aromatics BTEX and related aromatics Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 7.019424858 7.445491642 7.506994787 6.934799396 7.122090133 6.812822277 58001664 MFS_antibiotic Antibiotic resistance transporter Gluconobacter oxydans 621H superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter oxydans; 7.251037318 7.300719917 7.461945196 7.724312585 8.166628217 7.944051938 8.022944666 7.696731651 7.840629779 86157603 CopA Metal Resistance Copper Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 7.655756087 7.379640829 7.610824133 7.374600272 7.973443059 7.466109948 7.445306551 7.551092518 229467721 pstB Stress Phosphate limitation Exiguobacterium sp. AT1b 7.188606489 7.037236734 7.528957171 146281197 katA Stress Oxygen stress Pseudomonas stutzeri A1501 7.725616497 7.562553781 7.791192998 7.644710168 7.535632113 7.959172066 7.682321888 7.669530388 7.62960806 26986215 sox Sulphur Sulphur oxidation alpha proteobacterium HY-103 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 7.82897797 7.849080733 7.552810281 8.126335132 7.824632815 8.015420473 8.051129499 7.962142231 99038847 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.209692684 7.314236128 7.444487819 7.319443447 7.383152933 7.426769772 7.549821811 7.902462299 114334338 hly virulence hemolysin Shewanella frigidimarina NCIMB 400 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella frigidimarina; 7.354159879 6.926505849 1359475 oxyR Stress Oxygen stress Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 7.356623745 7.541640209 7.631999961 7.394570677 7.402671983 94426475 obgE Stress Radiation stress Oceanobacter sp. RED65 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Bermanella; 7.383054618 7.448953671 7.748347308 8.029011178 6.907890215 7.526840445 7.34757933 8.160616807 213536669 exoglucanase Carbon cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.402890304 7.436295321 7.592351153 7.656677401 7.083226994 7.427535191 7.552131789 7.417191001 260172746 Mex Antibiotic resistance transporter Bacteroides sp. D2 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 7.086052694 7.346675859 39935681 nifH Nitrogen Nitrogen fixation Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.46023063 7.435056996 7.600367388 7.524618306 7.668130421 7.783848889 111610925 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 7.707269967 7.100539412 7.188851337 7.305489628 7.209250791 7.60986693 7.353761237 7.271564118 261253991 pilin virulence pilin Vibrio orientalis CIP 102891 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 7.157364327 7.332862219 7.077900671 7.03911886 7.300479829 99030563 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 7.995639994 7.95772436 7.868120538 7.656882359 7.821408757 7.80333477 8.025254884 116013318 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.299471903 7.446947153 7.284490868 6.81716392 7.052122504 7.538313288 7.076590055 7.274019519 120590300 pimF Organic Remediation Aromatics Aromatic carboxylic acid Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 7.391424439 7.344286136 7.519943818 7.157394001 7.491726147 7.510379445 94471163 narG Nitrogen Denitrification uncultured bacterium 7.414989036 7.427480451 7.200978671 7.488875021 7.65726848 7.213006773 7.40809354 157377369 proV Stress Osmotic stress Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 7.029082455 7.087108778 6.997590008 84711569 pcc Carbon cycling Carbon fixation Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 7.215728014 7.343580317 7.442428424 7.774072369 7.326514492 7.717825693 7.517281192 7.446858808 7.462242527 209883179 CopA Metal Resistance Copper Oligotropha carboxidovorans OM5 7.361810224 7.349183242 6.940797111 6.952579839 7.555336193 126635953 alkB Organic Remediation Other Hydrocarbons Gordonia sp. SoCg superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 7.28506073 7.222245952 7.491777481 7.686749796 7.413439196 7.4701034 7.418075273 7.62680995 261867534 grpE Stress Heat shock Aggregatibacter actinomycetemcomitans D11S-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Aggregatibacter;species:Aggregatibacter actinomycetemcomitans; 7.264209756 7.164939388 169186673 ChrA Metal Resistance Chromium Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.903030777 7.69378974 7.392810501 7.108797816 7.496074534 7.288035624 6.873590914 58416260 cbdA Organic Remediation Aromatics Chlorinated aromatics Achromobacter xylosoxidans 7.30096837 7.947448601 7.174469339 7.321446177 7.497967492 7.179688494 158321478 atzC Organic Remediation Herbicides related compound Alkaliphilus oremlandii OhILAs superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus oremlandii; 7.264906506 7.027081362 7.072566959 161379273 sigma_32 Stress Sigma factors Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 7.268349159 7.148426647 6.875323514 7.579153581 73663642 ahpC Stress Oxygen stress Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus saprophyticus; 7.096258342 6.702488104 7.051492128 88864470 pimF Organic Remediation Aromatics Aromatic carboxylic acid Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 7.107006703 7.705851985 7.465371448 7.554112968 7.569569521 7.515946098 7.362052035 7.896949617 39933662 ChrA Metal Resistance Chromium Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.772253649 7.491165163 7.421677303 7.590865409 7.448850623 7.862884692 7.182500423 7.270101478 7.440091255 223690283 APS_AprA Sulphur adenylylsulfate reductase Desulfobacterium autotrophicum HRM2 7.180446696 6.974175685 8246808 TerZ Metal Resistance Tellurium Streptomyces coelicolor A3(2) 8.564888105 8.564680002 8.491902688 8.55999005 8.332220208 8.411533369 8.559647037 8.542455845 8.100919137 124111041 tutFDG Organic Remediation Aromatics BTEX and related aromatics uncultured bacterium superkingdom:Bacteria; 7.17000849 7.844102932 7.590087435 7.459260217 7.651742433 7.938888796 7.475921331 77381970 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.56863924 7.55180991 7.64707106 7.075146881 7.47065195 7.662910326 7.540804473 7.490490585 7.454507586 193077057 katE Stress Oxygen stress Acinetobacter baumannii ATCC 17978 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 7.068223454 7.080438167 145619313 bclA Organic Remediation Aromatics Aromatic carboxylic acid Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 7.421373683 7.552075783 7.541095912 6.944769377 7.237436748 7.477038664 7.149990327 7.284066861 224803720 fnr Stress Oxygen stress Opitutaceae bacterium TAV2 7.401115305 7.460156669 7.240407032 6.712421438 7.231570975 7.638978464 7.474371754 7.603922966 7.536711016 257170559 SMR_antibiotics Antibiotic resistance transporter Halomicrobium mukohataei DSM 12286 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halomicrobium;species:Halomicrobium mukohataei; 7.687806474 7.579311174 7.543957431 7.617796517 7.298269884 7.635264014 7.286051186 7.466556213 256805284 sigma_70 Stress Sigma factors Streptomyces viridochromogenes DSM 40736 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 8.238386623 8.42666072 8.143826106 8.678905384 8.780289527 8.486170235 8.370543018 8.460420434 160917508 narG Nitrogen Denitrification uncultured bacterium 7.372048583 7.208310671 7.096381727 6.653497584 7.135287393 7.469754419 7.270019374 6.963983485 7.100612397 154245259 phn Organic Remediation Herbicides related compound Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.381887268 8.317089446 8.313040165 8.207367863 8.619236163 8.300382916 8.408766627 7.946649145 126630868 sigma_32 Stress Sigma factors Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 7.379208058 7.354733224 7.411674227 6.924992939 6.91303579 7.329270769 227509158 ara Carbon cycling Carbon degradation Hemicellulose Lactobacillus brevis subsp. gravesensis ATCC 27305 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus brevis; 8.078695605 7.956465864 7.869158557 7.944700273 7.666247986 8.062942469 7.541854083 7.529792328 7.973759109 251797586 ara Carbon cycling Carbon degradation Hemicellulose Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.439979256 7.232758514 7.588763304 90200171 limEH Carbon cycling Carbon degradation Others Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 7.575747213 7.85262956 7.535079801 7.399110192 7.50896346 224606287 pstC Stress Phosphate limitation Natrialba magadii ATCC 43099 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natrialba;species:Natrialba magadii; 7.720392584 7.958429096 7.33301636 7.856592566 7.764835324 7.676333035 7.843762256 7.72229107 116750541 sigma_24 Stress Sigma factors Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 8.029219317 8.248391464 7.627876169 7.699951745 8.004874611 8.403303669 7.667443583 7.720053715 7.956270682 12001884 nifH Nitrogen Nitrogen fixation uncultured bacterium NR1626 superkingdom:Bacteria; 7.762631089 7.668280603 7.551992437 7.955384748 7.67914111 7.909820695 7.812493355 7.400862434 7.81087859 6463986 sigma_70 Stress Sigma factors Synechococcus elongatus PCC 7942 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus;species:Synechococcus elongatus; 7.252145213 7.276684532 7.370453692 7.207323606 6.864236384 7.718034151 7.420367995 7.151569729 7.362039811 166861067 cytochrome Energy process Energy process Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.123641349 7.137634708 170736617 katE Stress Oxygen stress Burkholderia cenocepacia MC0-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 7.702005914 7.633818285 7.776322478 7.730594811 7.755859949 7.969097061 7.567267931 7.87167214 7.624560008 88798286 sigma_38 Stress Sigma factors Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 7.542850072 7.34919961 220712078 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.737172078 7.551342605 7.713036451 7.835997684 110834500 sigma_24 Stress Sigma factors Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 7.748315415 7.5378621 7.621773997 7.507089011 7.48664348 7.58088328 7.418210656 7.214422479 7.427041422 259026623 gyrB other category gyrB Ferroglobus placidus DSM 10642 superkingdom:Archaea;phylum:Euryarchaeota;class:Archaeoglobi;order:Archaeoglobales;family:Archaeoglobaceae;genus:Ferroglobus;species:Ferroglobus placidus; 7.767174019 7.537331516 7.386357017 7.427037506 7.231325803 7.815065862 7.839668721 7.325938635 7.32614491 15073683 ChrA Metal Resistance Chromium Sinorhizobium meliloti superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium; 7.876103184 7.540618002 7.368673222 7.997546073 8.037591486 7.731010085 7.613846121 7.760204166 125861476 dsrB Sulphur sulfite reductase Methanoculleus marisnigri JR1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanoculleus;species:Methanoculleus marisnigri; 7.351155977 7.397470076 7.275443661 147886074 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 7.537056161 7.489258199 7.122863101 7.398694693 7.604843174 7.254675199 7.134607558 124522862 AmiE Organic Remediation Aromatics Other aromatics Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 7.368135803 6.963074216 7.038787529 117998306 pulA Carbon cycling Carbon degradation Starch Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 7.691135808 7.832570711 7.835042739 7.276859052 7.644353366 7.795238325 7.500054436 7.482212174 7.540849107 72388585 gyrB other category gyrB Psychrobacter glacincola superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 7.621345989 7.398748301 7.298787029 7.026539914 6.973674839 7.514355897 7.189392441 109640304 rd Organic Remediation Chlorinated solvents Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 7.133449554 7.267271226 7.156071455 7.186331811 7.032595009 170141110 CadA Metal Resistance Cadmium Burkholderia graminis C4D1M 7.882643231 7.356841734 7.323011771 7.032727623 7.469148184 7.820680161 109290304 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.531670983 7.638997211 7.269247771 7.256306744 115371531 phenol_oxidase Carbon cycling Carbon degradation Lignin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 8.163813002 8.077577777 8.247757837 8.122458212 8.4561078 8.098425208 8.124917504 8.329477368 8.449408933 149360034 gyrB other category gyrB Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 7.954117056 7.914240149 7.737302352 7.329646301 7.893468964 8.009322162 7.626346072 7.717175459 7.866993128 68552911 nifH Nitrogen Nitrogen fixation Prosthecochloris aestuarii DSM 271 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Prosthecochloris;species:Prosthecochloris aestuarii; 7.946012824 7.332639474 7.38184782 7.334096881 7.437556208 33568011 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Bordetella bronchiseptica RB50 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella bronchiseptica; 7.602854125 7.531898245 8.432797776 8.610070175 7.89455526 8.465029152 8.116652659 8.158823754 8.26087964 154156187 alkH Organic Remediation Other Hydrocarbons Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 8.357818395 8.054393564 8.042048261 7.972292649 8.305381473 8.039799242 8.138295583 7.932228643 8.080697631 115422909 ArsC Metal Resistance Arsenic Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 7.278732732 7.005835891 7.278511705 7.187845897 7.012237049 7.410948169 171991429 Al Metal Resistance Aluminum Exiguobacterium sibiricum 255-15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 7.055943369 7.538510159 99030533 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 8.3196687 8.073937705 7.6531159 7.91742775 7.878416718 7.876108912 7.576491414 7.307735134 7.911142628 260906836 iro virulence Brevibacterium linens BL2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium linens; 8.01363775 7.760006893 7.873582033 7.569447718 7.954054796 8.024853174 7.951768922 7.960841578 8.206867854 iegHydrogenase14 hydrogenase Energy process Energy process 7.631434797 7.428683117 7.161381308 7.71151764 7.555335711 7.262209532 7.130519821 260895032 type_III_secretion virulence secretion Vibrio parahaemolyticus Peru-466 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.265848806 7.153865857 7.002210685 6.784248101 6.942559191 7.507993346 7.016799027 7.050666226 92393258 pimF Organic Remediation Aromatics Aromatic carboxylic acid Psychrobacter cryohalolentis K5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter cryohalolentis; 7.504463043 7.383628629 7.786665592 7.25405606 7.532914112 7.986017532 146195022 phn Organic Remediation Herbicides related compound Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.191587859 7.815534059 7.257773016 7.790461389 78217941 ZntA Metal Resistance Zinc Desulfovibrio desulfuricans G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 8.125662425 8.556928589 7.865036151 7.418398441 8.502501662 7.890300174 8.068775727 8.142475939 8.484408714 37681180 oxyR Stress Oxygen stress Vibrio vulnificus YJ016 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 7.553283963 7.443192769 7.133562455 7.407896292 7.993975004 7.331666556 7.661188158 145962227 phn Organic Remediation Herbicides related compound Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 8.145974222 8.017417093 7.915306178 7.119310086 7.885810376 7.704777022 7.795514621 7.717096214 7.63672422 260910473 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Prevotella sp. oral taxon 472 str. F0295 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella sp. oral taxon 472; 7.241668504 7.409167758 7.452894743 6.872541261 7.199147547 7.355117963 7.073663005 7023983 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Aeromonas sp. 10S-24 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas; 7.726480709 7.423883202 7.175851607 7.377423983 7.920281273 50120325 CusF Metal Resistance Copper Erwinia carotovora subsp. atroseptica SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 7.624681759 7.297944573 7.356469338 7.380208566 7.21535532 7.498827398 7.104855092 7.085776544 7.448383313 189204067 atzA Organic Remediation Herbicides related compound Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7.535922856 7.496916725 7.22412309 6.960783704 7.497049285 7.743659873 7.476940909 7.666568741 7.470112236 84687620 phtA Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2654 7.694796009 7.664848771 7.62974217 7.754589268 7.622730714 7.569560548 7.534999208 7.579505681 7.762295583 72384130 phtA Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.556218501 7.400731099 7.615825827 77378447 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.597804197 7.51119985 7.171156714 7.107523437 7.589507162 7.206779817 7.340133701 72080402 sigma_70 Stress Sigma factors Mycoplasma hyopneumoniae 7448 superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Mycoplasmatales;family:Mycoplasmataceae;genus:Mycoplasma;species:Mycoplasma hyopneumoniae; 7.410726069 7.284372938 7.4466718 6.914779845 7.751878718 7.187826922 7.02997779 7.447215276 108762557 amyA Carbon cycling Carbon degradation Starch Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 7.434120282 7.620499259 7.377597906 7.209531216 7.71714028 7.317665535 7.216696139 7.333562196 163761870 ara Carbon cycling Carbon degradation Hemicellulose Bacillus selenitireducens MLS10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus selenitireducens; 7.368641656 7.356804804 7.405731953 51893150 MFS_antibiotic Antibiotic resistance transporter Symbiobacterium thermophilum IAM 14863 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVIII. Incertae Sedis;genus:Symbiobacterium;species:Symbiobacterium thermophilum; 7.592234978 7.592676364 7.246689364 7.413449159 7.407000527 7.931159677 7.410262648 7.365035714 7.291011282 211637885 type_III_secretion virulence secretion Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus asymbiotica; 7.033660337 7.033712164 6.974291164 6.838059066 7.463051042 12722228 ppx Phosphorus Phosphorus utilization Pasteurella multocida subsp. multocida str. Pm70 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Pasteurella;species:Pasteurella multocida; 7.416540108 7.390179461 7.358133322 7.117583701 7.573230804 7.71161138 7.353921406 7.165613022 7.316761856 225045394 glnA Stress Nitrogen limitation Clostridium asparagiforme DSM 15981 7.389878208 7.260725741 7.304413645 7.129012761 7.47847453 7.705316755 7.403122603 7.253956213 7.571989959 86356395 sigma_24 Stress Sigma factors Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.947961936 7.774008581 7.369409726 7.574560233 8.142840579 8.301011733 7.980902076 7.693491287 8.135432407 146147006 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 6.98632289 6.709264281 6.871590643 227495122 hrcA Stress Heat shock Actinomyces coleocanis DSM 15436 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces coleocanis; 7.507384888 7.495814759 7.215067368 6.747183768 7.524328021 7.473007444 7.013503025 7.149719571 7.254110767 51244650 dsrA Sulphur sulfite reductase Desulfotalea psychrophila LSv54 7.792843003 7.692329484 7.407880461 7.233365377 7.67658248 7.740542276 7.733126147 7.129798291 7.222478713 212695902 sigma_70 Stress Sigma factors Anaerococcus hydrogenalis DSM 7454 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Anaerococcus;species:Anaerococcus hydrogenalis; 7.065320722 6.910643156 7.324702689 6.913516015 7.3533571 74056239 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 8.248313431 8.129323838 8.453298584 7.41984982 8.375273902 8.053799903 8.075298924 8.296299236 157319480 phoA Stress Phosphate limitation Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 7.266490059 7.217552659 7.066259967 161788151 pstC Stress Phosphate limitation Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 7.344904931 7.59627852 117993535 alkB Organic Remediation Other Hydrocarbons Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.901872391 7.697246672 7.412471694 7.361717393 7.612571161 7.780206379 7.427435744 229809346 pstB Stress Phosphate limitation Collinsella intestinalis DSM 13280 7.43528734 7.743711524 7.769127919 7.994670913 7.723782954 7.979476066 7.565979476 8.026812377 7.917842199 145701164 glycosyl_transferase_EPS Bioleaching EPS Metallosphaera sedula DSM 5348 7.241183162 7.156325942 7.340220872 7.838102001 169633188 CopA Metal Resistance Copper Acinetobacter baumannii SDF superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 7.320066061 7.022204477 7.270254534 6.970264085 7.306438857 115388659 cellobiase Carbon cycling Carbon degradation Cellulose Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.885609309 7.58004422 7.456304023 7.371494286 7.563143835 7.439592844 7.561713815 7.22868197 7.500235801 238695352 DNA_ligase Bacteria phage REPLICATION Enterobacteria phage JS10 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.467405894 7.443777368 7.321973228 7.34416281 7.662992883 7.842288066 7.340740056 7.849451908 160865467 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 7.444564437 7.610983124 7.446705407 7.537499525 7.258711689 7.990862661 7.882328637 7.420849997 7.430543033 116334428 pstB Stress Phosphate limitation Lactobacillus brevis ATCC 367 7.255045672 7.125467091 19387569 major_capsid_protein Bacteria phage STRUCTURAL Spiroplasma phage 4 family:Microviridae;genus:Spiromicrovirus; 7.016077741 7.01901788 148513177 cap virulence capsule Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.30914893 7.335825308 7.432829444 7.195155618 7.542952218 7.257430965 7.268116917 110334219 CopA Metal Resistance Copper Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 7.438627627 7.323926028 7.576064432 7.69642853 7.340492306 7.539861409 7.48238756 187981025 katE Stress Oxygen stress Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7.729328175 7.849380779 8.158275969 7.744474696 8.267356371 8.180626535 7.944439774 8.034670349 8.088816044 83835699 ZntA Metal Resistance Zinc Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 7.378255629 7.159635271 6.925863884 6.838353742 7.462061018 84778373 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.703011637 7.766403098 8.04140798 7.537970872 7.886805015 7.426171089 8.001612207 240865784 sigma_24 Stress Sigma factors Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 7.278043174 6.94697099 7.033191286 6.973082226 7.521199095 261880495 sigma_70 Stress Sigma factors Prevotella bergensis DSM 17361 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bergensis; 7.102629296 7.168625779 6.883649628 113474131 ppx Phosphorus Phosphorus utilization Trichodesmium erythraeum IMS101 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Trichodesmium;species:Trichodesmium erythraeum; 7.456560915 7.266458479 7.525394175 7.271261798 7.292822658 8.006425865 7.750362481 7.560102514 7.725224795 148838543 glnA Stress Nitrogen limitation Vibrio shilonii AK1 7.176053477 6.988427504 149821035 linB Organic Remediation Pesticides related compound Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 7.482818557 7.708873377 7.689430523 7.549768732 8.071561995 7.998160065 7.678721681 7.670187174 241462626 sigma_70 Stress Sigma factors Allochromatium vinosum DSM 180 7.244726247 7.564121016 7.316919893 7.395041081 7.385797568 7.435309579 7.617514596 7.902789287 7.784381426 118568782 tfdA Organic Remediation Aromatics Chlorinated aromatics Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 7.716920657 7.652051724 7.384857274 7.211825657 7.704509967 118581246 pstB Stress Phosphate limitation Pelobacter propionicus DSM 2379 7.540919915 6.952124137 55378015 dmsA Organic Remediation Others Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 7.446148701 7.429300082 7.174573143 163811754 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.329176048 7.600238674 7.183759233 6.824990338 7.197619474 219678137 exaA Organic Remediation Chlorinated solvents gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.154077939 7.608856988 7.318725196 7.143370907 7.618481342 7.394196855 42522755 amyA Carbon cycling Carbon degradation Starch Bdellovibrio bacteriovorus HD100 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 7.677746341 7.589217352 7.275129335 7.34747859 7.408277881 7.83194851 7.456217672 7.068692847 7.345003487 238500552 phenol_oxidase Carbon cycling Carbon degradation Lignin Aspergillus flavus NRRL3357 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus flavus; 7.598948784 7.777565972 7.131364127 7.317696801 8.120802337 7.299407081 7.516285588 7.307271708 24374580 cytochrome Energy process Energy process Shewanella oneidensis MR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella oneidensis; 7.192081442 7.400786905 6.881824332 7.688853919 169823702 gyrB other category gyrB Finegoldia magna ATCC 29328 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Finegoldia;species:Finegoldia magna; 7.927079049 8.080676704 7.659978651 7.672417455 7.655515322 7.765652137 7.616365566 7.468779323 7.649291754 61611864 bphF1 Organic Remediation Aromatics Polycyclic aromatics Delftia tsuruhatensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia; 8.144868756 7.96097345 8.111319054 8.45539368 8.210252543 8.026936623 7.884532081 8.142993818 268313180 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Thermomonospora curvata DSM 43183 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora;species:Thermomonospora curvata; 8.110033422 8.238806385 8.317384717 7.801711594 8.212097621 7.866088512 7.736646414 8.166202451 83636624 obgE Stress Radiation stress Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 7.446285496 7.442220079 7.39259743 7.111611486 7.480675018 7.265464113 7.476747297 7.611720258 255104631 BchY other category chlorophyllide reductase Thalassiobium sp. R2A62 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Thalassobium; 7.759566346 7.339897688 7.369804662 7.095906037 7.348645 7.539730736 145221374 pcc Carbon cycling Carbon fixation Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 7.301549249 7.209648301 7.060152103 7.09733304 7.118696163 210065233 atzA Organic Remediation Herbicides related compound Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 6.799217079 7.482748034 159177588 hrcA Stress Heat shock alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 7.749530583 7.707512856 7.427890102 7.243477021 7.351465203 7.916434089 7.715422826 7.488705951 7.339892847 220708161 nagG Organic Remediation Aromatics Aromatic carboxylic acid Geobacillus sp. Y412MC61 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 6.984946356 7.231838638 7.182645997 260630685 ctsR Stress Protein stress Jonquetella anthropi E3_33 E1 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Jonquetella;species:Jonquetella anthropi; 7.573320768 7.273999625 7.323882182 7.028726811 7.283091877 7.321505173 7.525919783 158443036 Al Metal Resistance Aluminum Faecalibacterium prausnitzii M21/2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Faecalibacterium;species:Faecalibacterium prausnitzii; 7.236425953 7.145011541 6.989020331 7.107060838 7.345973946 7.189300424 133740357 ArsC Metal Resistance Arsenic Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 7.839906014 8.046415239 7.386108687 7.606460011 8.021750564 3378393 phdJ Organic Remediation Aromatics Polycyclic aromatics Novosphingobium aromaticivorans 7.890796171 7.621214744 7.694245953 7.094168737 7.518882455 7.504204212 7.515619373 7.31129063 153898402 AmiE Organic Remediation Aromatics Other aromatics Methylobacterium extorquens PA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 7.430295557 7.685174286 8.078865407 8.067554494 8.076804163 8.084528066 7.884789387 8.255041977 8.008097107 10640838 glnA Stress Nitrogen limitation Thermoplasma acidophilum 7.420687685 7.475069018 148655099 Catechol Organic Remediation Aromatics Other aromatics Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 8.064327173 7.849593383 7.788755894 7.531893546 8.082675788 7.810726131 8.094452762 7.873918724 7.727758822 161161465 sigma_70 Stress Sigma factors Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 7.91444696 7.904254424 7.582041148 7.757110683 7.736618459 7.916596454 7.967466106 7.909394413 7.503993269 114570211 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 8.378723652 8.436331807 8.282377966 8.432243377 8.505508495 8.448177648 8.313491138 8.101280607 32473880 ahpC Stress Oxygen stress Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 7.44843751 7.196081503 7.182224875 7.307013321 7.167815333 7.929225154 7.183549894 7.308130354 6.999863852 42555499 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 7.781048048 8.19166693 7.92758614 7.87195499 7.732743718 7.940476285 8.242982731 8.221134329 7.833646929 226358224 pstB Stress Phosphate limitation Deinococcus deserti VCD115 7.77639728 7.740503688 7.380214211 7.848676625 7.689438951 7.489757219 283560134 sigma_24 Stress Sigma factors Rhodomicrobium vannielii ATCC 17100 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 7.461067322 7.293762773 7.161638026 7.252153909 7.257358369 7.65994693 156059294 tfdA Organic Remediation Aromatics Chlorinated aromatics Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 7.088461945 7.207554256 7.272150213 78193497 narI Stress Oxygen limitation Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 8.480080001 8.289578251 7.868961026 8.296928026 9.023272339 8.014197781 8.815596055 8.918556886 15964264 pstC Stress Phosphate limitation Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 8.083634466 8.062838596 7.674176571 8.033251628 7.962680411 7.894878484 7.962764525 8.04589541 8.039886711 227846620 ahpC Stress Oxygen stress Halogeometricum borinquense DSM 11551 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halogeometricum;species:Halogeometricum borinquense; 7.86815055 7.791246482 7.609109007 8.189266089 7.841281371 7.717057791 8.192159717 7.676805896 33669028 ArsC Metal Resistance Arsenic Rhodococcus erythropolis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7.425064564 7.466307271 7.819588949 7.323664595 7.967473061 7.697674597 7.702865018 7.741984647 7.498304063 149783087 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.19753883 8.306113204 8.212063293 7.458557395 8.338394432 8.019037614 8.148218135 8.035718951 8.363799216 119773174 pimF Organic Remediation Aromatics Aromatic carboxylic acid Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 7.549704605 7.866831571 7.557615313 7.537579689 7.651403318 8.019974495 222438341 pimF Organic Remediation Aromatics Aromatic carboxylic acid Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 7.2216731 7.410361735 7.461198732 6.986719714 7.535712468 7.5251916 7.336776589 7.508462952 7.44477089 11228489 katE Stress Oxygen stress Streptomyces coelicolor A3(2) 8.184574105 8.111110776 8.356758482 8.202882942 8.760645037 8.177681543 8.647664983 8.690873082 8.634718891 156451144 nagG Organic Remediation Aromatics Aromatic carboxylic acid Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 7.722128495 7.400568366 7.20960851 7.539993261 7.581474603 7.876545144 7.777274247 7.70127072 7.755513844 11177172 tape_measure_protein Bacteria phage STRUCTURAL Lactococcus phage TP901-1 order:Caudovirales;family:Siphoviridae; 7.149965483 7.142889501 6.876040724 7.510053928 262401506 pilin virulence pilin Vibrio sp. RC586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.28368993 7.229355262 6.95916582 6.930988781 7.636846519 7.403020953 6.938437455 7.076535745 38570182 mcrA Carbon cycling Methane Methane production uncultured euryarchaeote superkingdom:Archaea;phylum:Euryarchaeota; 7.477286578 7.622917783 7.223468118 7.137022241 7.776181416 7.613022335 7.339396919 7.869340004 224372359 pstS Stress Phosphate limitation Nautilia profundicola AmH superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Nautiliales;family:Nautiliaceae;genus:Nautilia;species:Nautilia profundicola; 7.320195625 7.119033523 145300246 obgE Stress Radiation stress Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 7.843025234 7.955965212 7.752771487 8.097339176 7.719123569 7.960284143 8.062510123 7.930849677 7.567568155 50084777 nhh Organic Remediation Aromatics Nitoaromatics Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 7.726977824 7.862793145 7.431460298 7.703241771 7.575171948 7.495164016 8.03809561 145589003 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Polynucleobacter sp. QLW-P1DMWA-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 7.484969462 7.434212761 7.70692316 6.985233196 7.540960357 7.540062392 7.471738368 7.421635659 156112044 grpE Stress Heat shock Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 7.327540649 7.318172614 7.44899698 7.612110884 7.46871089 7.63623051 7.536784841 255336136 fnr Stress Oxygen stress Hyphomicrobium denitrificans ATCC 51888 7.284437228 7.079112821 7.327465163 6.948357093 7.255189553 7.763066293 7.273223886 7.491210997 7.95444319 39995701 cytochrome Energy process Energy process Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 7.43459499 7.256665097 7.156546071 78686675 glucoamylase Carbon cycling Carbon degradation Starch Shewanella sp. ANA-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 8.556761011 8.222563419 7.758591924 7.127788767 8.225767765 7.689537486 7.631634354 7.77040955 7.631725132 218710278 ArsC Metal Resistance Arsenic Vibrio splendidus LGP32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 7.646464972 7.175090295 6.796931654 7.548202174 149950986 glnA Stress Nitrogen limitation Alkaliphilus metalliredigens QYMF 7.363098695 7.385728288 7.26721219 7.311026352 7.566882596 148836468 tutFDG Organic Remediation Aromatics BTEX and related aromatics Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 7.492781497 7.20390015 7.24144314 7.394994701 7.217618848 7.359546109 224603794 narI Stress Oxygen limitation Lutiella nitroferrum 2002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Lutiella;species:Lutiella nitroferrum; 7.216866159 7.057075553 7.295250974 6.927113574 6.741389533 6.715795191 7.1397364 217976719 ChrA Metal Resistance Chromium Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 7.780216612 7.47322997 7.457838704 7.030028895 7.078738746 7.350720761 254045349 narJ Stress Oxygen limitation Lactobacillus plantarum JDM1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus plantarum; 7.30914893 7.588797191 7.588522343 7.772590292 6.888931671 7.826086342 7.01801622 7.317377044 7.491804417 281316103 sigma_70 Stress Sigma factors Victivallis vadensis ATCC BAA-548 superkingdom:Bacteria;phylum:Lentisphaerae;family:Victivallaceae;genus:Victivallis;species:Victivallis vadensis; 7.264433959 7.197727641 7.342770035 7.242811879 7.31033383 88805792 pcc Carbon cycling Carbon fixation Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 7.464832916 7.405003508 7.689091043 7.705758388 7.752925833 8.039885309 8.068723486 8.094156124 8.007917711 223937206 sigma_24 Stress Sigma factors bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 8.497527802 8.537416074 8.366714147 8.251323482 8.486924636 8.405847875 8.713604562 8.584393453 8.557061828 34557768 iro virulence Wolinella succinogenes DSM 1740 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Wolinella;species:Wolinella succinogenes; 7.580642225 7.320787709 7.597198432 7.413910636 7.175655888 7.475117789 18034332 dsrB Sulphur sulfite reductase Desulfonatronovibrio hydrogenovorans superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfonatronovibrio; 7.240312426 7.303190167 119470607 BpH Organic Remediation Aromatics Aromatic carboxylic acid Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 7.855629664 7.674329435 7.527268216 7.227203734 7.738251374 7.739299617 7.59084919 7.440106178 7.597385523 257869066 pstB Stress Phosphate limitation Enterococcus gallinarum EG2 7.081341155 7.079181058 7.045371478 27378078 catechol_B Organic Remediation Aromatics Other aromatics Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.426688587 8.297156602 8.284594781 7.789233743 8.533643231 7.869500084 8.108941582 8.1609582 7.993459584 21734422 ppk Phosphorus Phosphorus utilization Arthrobacter sp. KM superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.622658751 7.335316901 7.587897751 7.800565848 7.168623718 7.932095607 7.202884854 7.301757994 17431118 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 7.475125712 8.341380751 8.235677427 8.204769419 8.323635057 226185191 SMR_antibiotics Antibiotic resistance transporter Rhodococcus erythropolis PR4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 7.571697685 7.401481483 7.326990259 7.746327003 7.419638423 7.14795593 7.341785874 157321239 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 7.158416049 7.257234598 7.198201973 7.183755285 7.500743077 7.548881957 7.160657199 145242124 vdh Carbon cycling Carbon degradation Others Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.326099314 7.474555814 7.208315099 7.127047253 7.640398199 7.095764646 7.234966421 1813636 nifH Nitrogen Nitrogen fixation Frankia sp. superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.023117055 7.837031089 7.627148868 7.683487379 8.045947274 8.103819633 7.881721492 7.794451994 8.043009192 254441200 glnA Stress Nitrogen limitation Octadecabacter antarcticus 307 7.832426445 7.681061732 7.57764128 7.637382392 7.76960903 7.649843934 7.499076831 7.893347792 219870612 ppx Phosphorus Phosphorus utilization Haemophilus parasuis SH0165 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus parasuis; 7.446056107 7.139295151 86357129 ppk Phosphorus Phosphorus utilization Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.676554874 7.73048943 7.369273776 7.667829095 7.522444864 7.632545064 7.462264663 7.432004287 7.434472299 4514409 gyrB other category gyrB Acinetobacter sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 7.562236137 7.087189561 7.191818669 7.070092505 7.197937255 7.760387077 7.253239736 7.941300168 126105559 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.186915859 7.527290725 7.137358303 7.285342093 163756344 AceB Carbon cycling Carbon degradation others Kordia algicida OT-1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Kordia;species:Kordia algicida; 7.866260116 7.84562616 7.606856297 7.931340329 8.011350022 7.924592799 7.715634018 7.86501172 157316927 AceB Carbon cycling Carbon degradation others Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 7.070890527 7.037779917 6.946501824 194597665 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 7.886582188 7.724751816 7.317444072 7.429693513 7.60098114 7.922004537 7.565510524 7.71142386 7.25506768 220908241 cadBD Metal Resistance Cadmium Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.762574419 7.704736543 7.786698694 7.526518658 8.0449231 7.854217308 7.776764753 7.455234366 7.715085727 42475498 bphC Organic Remediation Aromatics Polycyclic aromatics Rhodococcus rhodochrous superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7.679509868 7.488570429 7.384266463 6.906892434 7.494620606 7.626596477 7.22373108 7.085888282 7.585294184 225792194 fnr Stress Oxygen stress Acidobacterium capsulatum ATCC 51196 8.105403324 8.088726997 7.69937986 7.909217892 7.823745489 8.141681115 7.867809771 7.805502995 8.024436024 260860106 obgE Stress Radiation stress Leptotrichia hofstadii F0254 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteria;order:Fusobacteriales;family:Fusobacteriaceae;genus:Leptotrichia;species:Leptotrichia hofstadii; 7.562186515 7.467136477 7.378200897 7.43755566 7.068496687 7.865615956 7.790554515 7.353973425 7.437300445 84359284 endochitinase Carbon cycling Carbon degradation Chitin Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 7.414813737 7.793949772 7.423469002 7.874941609 7.518692151 7.743934559 7.50759408 109290197 Host_recognition_T4_type Bacteria phage HOST RECOGNITION/STRUCTURAL Aeromonas phage 25 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.271156751 7.541316359 7.767045348 7.57367862 7.474376192 7.724548335 226228636 ahpC Stress Oxygen stress Gemmatimonas aurantiaca T-27 superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 7.794201572 7.861718378 7.837145107 7.525107109 8.01218726 7.955321507 8.12730628 7.919752992 7.941306867 58270612 AceB Carbon cycling Carbon degradation others Cryptococcus neoformans var. neoformans JEC21 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Tremellomycetes;order:Tremellales;family:Tremellaceae;genus:Filobasidiella;species:Filobasidiella neoformans; 7.240778267 7.64156464 7.057640702 7.440191113 261344597 type_III_secretion virulence secretion Providencia rustigianii DSM 4541 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 7.721051144 7.655319133 7.421836893 7.424188124 7.501742043 151281422 ahpC Stress Oxygen stress Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 7.299878784 7.020912685 6.980695955 7.382744384 3668179 lip Carbon cycling Carbon degradation Lignin Pleurotus ostreatus 7.418441715 7.898528861 8.104154052 8.078268199 7.708732215 7.367122396 8.019155846 7.635553929 148499640 nahA Organic Remediation Aromatics Polycyclic aromatics Sphingomonas wittichii RW1 7.383763341 7.307972615 7.571420697 7.070269079 7.168692043 7.79243455 7.43416594 7.205754937 151108 bphD Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.905668052 7.917168382 7.831891945 7.373208067 7.82334833 7.69501506 7.814751925 7.745726666 7.988070576 124514722 LPS_heptosyltransferase_EPS Bioleaching EPS Leptospirillum sp. Group II UBA 7.774704302 8.198595065 7.818485714 7.916380897 8.096082226 8.010559937 8.026627038 7.570518224 117927305 pstB Stress Phosphate limitation Acidothermus cellulolyticus 11B 7.034136673 7.032443984 7.14563749 6.918258789 7.355564358 7.093352803 7.097726697 7.233362554 187926706 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.146027993 7.908403458 7.980128249 7.435938131 8.052234859 7.715581141 7.90536373 7.907516946 7.627893864 255062960 obgE Stress Radiation stress Nitrosomonas sp. AL212 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 7.64549406 7.575831805 7.341031097 6.963315571 7.196753513 7.265029422 7.169957195 7.08084766 6.987696906 82452837 endochitinase Carbon cycling Carbon degradation Chitin Francisella tularensis subsp. novicida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Francisellaceae;genus:Francisella; 7.036118851 6.889710934 6.970830837 239996773 fnr Stress Oxygen stress Alteromonas macleodii ATCC 27126 6.965052777 7.138862426 6.869379202 6.487395257 7.313228272 86158916 cytochrome Energy process Energy process Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 7.598502285 7.69287536 7.366775179 7.216471159 7.798855517 7.984494082 7.343356969 7.413771251 144900524 rubisco Carbon cycling Carbon fixation Magnetospirillum gryphiswaldense MSR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 7.737159388 8.16732009 7.88216506 7.101717452 7.724061201 7.87078411 7.531218919 7.876020086 50419599 pheA Organic Remediation Aromatics Other aromatics Debaryomyces hansenii CBS767 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Debaryomyces;species:Debaryomyces hansenii; 7.265403249 7.097293251 6.868961481 6.706435707 7.454309602 150836261 sigma_70 Stress Sigma factors Marinomonas sp. MWYL1 7.429122367 7.360779162 7.806975979 7.194169735 7.548119973 7.497864363 7.341771457 7.350278103 163746160 AceB Carbon cycling Carbon degradation others Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 7.79825061 7.77854996 8.023059711 154299780 glx Carbon cycling Carbon degradation Lignin Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 7.477034826 7.429263926 7.529930052 7.10425674 7.517424963 118424422 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.591798634 7.488553262 145299761 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 7.418322485 7.651537552 7.55295802 7.231864463 7.764206736 7.85820819 7.753364264 7.899868493 7.840225757 146284583 ArsC Metal Resistance Arsenic Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 7.739014042 7.445012786 7.000664922 7.203889028 7.535917432 6.892857947 6.805454484 7.383601458 84502849 PobA Organic Remediation Aromatics Aromatic carboxylic acid Oceanicola batsensis HTCC2597 9.131504245 9.194865501 9.440431463 156857751 AprA Sulphur adenylylsulfate reductase uncultured bacterium 6.81806335 7.487619755 149815030 AceA Carbon cycling Carbon degradation others Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 8.20052875 7.893654887 7.885192583 7.646737575 7.85790914 8.05281974 8.340409048 38004658 bphA Organic Remediation Aromatics Polycyclic aromatics Pseudomonas fluorescens 7.607553095 7.677810303 8.068598989 7.420360838 7.573308482 262222290 pilin virulence pilin Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;species:Grimontia hollisae; 8.106003858 7.795139418 7.810429695 7.310530856 7.770838473 7.858618941 7.726112883 7.399420804 7.225357728 76577432 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.441815748 7.469259456 7.533751183 7.668373931 7.230705995 238708757 B_lactamase_C Antibiotic resistance Beta-lactamases Yersinia rohdei ATCC 43380 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia rohdei; 7.326008906 7.182512571 7.211269102 7.195853214 6.895895527 7.081396304 7.112876512 7.21437311 94970322 amyA Carbon cycling Carbon degradation Starch Acidobacteria bacterium Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 7.277934972 7.259122934 261409946 fnr Stress Oxygen stress Geobacillus sp. Y412MC10 6.90693514 6.820541569 77920456 nrfA Nitrogen Dissimilatory N reduction Pelobacter carbinolicus DSM 2380 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter carbinolicus; 8.337726017 8.295992503 8.349876171 7.974921029 8.75483539 8.424502585 8.705577942 8.206032678 219965718 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.740573761 7.802456339 7.804734368 7.757785954 7.966633411 7.785004911 7.633116355 7.743102262 69938898 mdlB Organic Remediation Aromatics Aromatic carboxylic acid Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.108016803 7.912049684 7.723782449 7.704444242 8.125492756 8.177536107 7.997715492 7.845933025 7.887119756 223454186 pcc Carbon cycling Carbon fixation Bifidobacterium breve DSM 20213 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium breve; 7.570456504 7.950039328 7.809532699 7.597484162 7.936770326 7.640009824 7.726028801 7.94348871 7.632366586 91781025 vanA Carbon cycling Carbon degradation Others Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.521845712 7.322274613 7.141964529 7.44903376 7.794389112 7.124750223 7.523495135 71848326 sox Sulphur Sulphur oxidation Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 7.416486771 7.224835005 7.097736005 7.23541739 7.769304094 187919760 B_lactamase_C Antibiotic resistance Beta-lactamases Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.359344807 7.458179071 7.963694755 7.686463844 7.563323941 8.0601989 7.363809171 7.746568618 7.735759382 229748947 ara Carbon cycling Carbon degradation Hemicellulose Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 7.73996435 7.477395284 7.471307784 7.736301634 7.437923397 7.829587403 7.286759777 7.39541722 171989308 nplT Carbon cycling Carbon degradation Starch Exiguobacterium sibiricum 255-15 6.918993235 6.79112529 7.46632144 6.795408614 7.576944787 89343006 CopA Metal Resistance Copper Mycobacterium flavescens PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 7.471161506 8.051636372 8.010961867 7.633535125 7.944155699 7.928876347 7.990224369 8.17525951 7.778276137 85835475 tfdA Organic Remediation Aromatics Chlorinated aromatics Vibrio sp. MED222 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.648971055 7.649255053 7.354260208 7.654086202 7.945073967 7.666573691 7.590207205 7.550908704 258558398 SMR_antibiotics Antibiotic resistance transporter Nakamurella multipartita DSM 44233 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 7.29771283 7.942482079 8.011962728 8.058986357 7.418651467 7.81918067 7.722738025 7.628819171 7.672886239 91786345 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 8.166103458 8.185010641 8.308795899 8.268734367 8.023134965 8.142164119 7.805249959 8.092673881 7.61106756 120325106 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 7.350092112 7.120774879 6.894168345 70704732 gyrB other category gyrB Acholeplasma morum superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Acholeplasmatales;family:Acholeplasmataceae;genus:Acholeplasma; 7.178701178 7.249282754 6.98188861 6.876220068 6.762751251 7.760406741 7.066264945 7.355616264 78065954 mhpA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.358930127 7.26096154 7.35476055 6.854522368 6.855399708 7.600610485 6.921077113 7.237549572 33571927 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Bordetella pertussis Tohama I superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella pertussis; 7.761274877 7.541450502 7.431192949 7.485238681 7.828196923 7.863549184 7.394365512 167950928 sigma_38 Stress Sigma factors Endoriftia persephone 'Hot96_1+Hot96_2' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Endoriftia;species:Endoriftia persephone; 7.358424808 6.844390649 7.347787026 6.900736371 7.152552487 7.376321921 77457025 iro virulence Pseudomonas fluorescens Pf0-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.584561355 8.20147648 8.431572621 8.707636842 8.499106286 8.379582966 8.522190029 8.588858641 254509850 glnA Stress Nitrogen limitation Rhodobacteraceae bacterium KLH11 7.919403844 7.903267194 7.550633104 7.551312018 7.640087803 7.859468844 7.625893002 7.470010281 163852109 CopA Metal Resistance Copper Methylobacterium extorquens PA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 7.775601017 7.802188369 7.270306006 7.673597984 7.585968433 8.031586595 7.570669194 7.60136277 7.140854937 145234174 BpH Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 6.964958114 7.671981425 220690536 glnA Stress Nitrogen limitation Aspergillus flavus NRRL3357 7.415024111 7.763200385 7.344070848 6.962752105 7.33807048 83845705 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 7.272825236 7.015755004 7.108454324 6.997718904 6.89533155 23325733 amyA Carbon cycling Carbon degradation Starch Bifidobacterium longum NCC2705 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 8.008083218 8.046656525 7.761703115 7.745854486 8.173980818 8.596501185 8.516443179 8.617643593 77997171 alkK Organic Remediation Others Carboxydothermus hydrogenoformans Z-2901 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Carboxydothermus;species:Carboxydothermus hydrogenoformans; 7.234061884 6.871429914 7.19171838 7.160387678 6.7333543 111019873 nmoA Organic Remediation Aromatics Nitoaromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.015582045 8.096553235 8.447356068 7.735611248 7.849938479 8.325696627 7.739888438 7.912605332 88947369 tutFDG Organic Remediation Aromatics BTEX and related aromatics Desulfotomaculum reducens MI-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum reducens; 7.485354347 7.097004624 7.449561957 6.836991134 7.121503489 113461741 sigma_24 Stress Sigma factors Haemophilus somnus 129PT superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Histophilus;species:Histophilus somni; 8.067405066 7.510366813 7.407114085 7.325509832 7.606736768 7.660391028 7.938166876 7.846594652 7.809118949 146405358 dehH109 Organic Remediation Chlorinated solvents Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.667368176 7.626485144 7.816718912 7.596604777 7.8827992 7.879894497 8.110259728 7.962443388 7.697405201 161390794 glnA Stress Nitrogen limitation Roseobacter litoralis Och 149 7.743948605 7.633900511 7.590226189 7.937244587 7.473451122 8.289788317 7.481183639 7.721996226 262220393 pstC Stress Phosphate limitation Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;species:Grimontia hollisae; 7.931700835 7.487726133 7.27281476 7.519989309 7.264234479 7.854466096 7.367758154 7.57697329 8.009241482 154691406 katE Stress Oxygen stress Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 7.112119874 7.211213072 7.162240056 6.596088917 6.754791602 7.46624661 7.020861154 7.058011396 82411494 ahpC Stress Oxygen stress Nitrosospira multiformis ATCC 25196 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira;species:Nitrosospira multiformis; 7.815067893 7.570361734 7.809127194 7.531168172 8.212996599 7.821318446 7.663758745 218515590 nmoA Organic Remediation Aromatics Nitoaromatics Rhizobium etli 8C-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.096845841 7.172242303 84687073 fnr Stress Oxygen stress Rhodobacterales bacterium HTCC2654 7.995281908 8.074111752 7.63183795 7.490310016 7.266575942 84693802 pcc Carbon cycling Carbon fixation Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8.091222599 7.847779359 7.843462948 7.96077112 7.838737297 7.921983253 8.117101884 8.177699864 8.095907009 151302244 APS_AprB Sulphur adenylylsulfate reductase Desulfobotulus sapovorans superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobotulus; 7.927349848 7.557018507 7.357620008 7.466423989 7.692157383 7.870976399 7.389681527 7.891943596 149361012 atzA Organic Remediation Herbicides related compound Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 7.24103621 7.767968483 7.965322917 7.598299128 7.669759548 7.496955689 142851284 AceB Carbon cycling Carbon degradation others Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 8.177521941 7.951834153 8.112958686 8.240049214 7.902066843 8.211128976 7.481613269 7.848798364 7.676964281 145566972 phenol_oxidase Carbon cycling Carbon degradation Lignin Coprinopsis cinerea superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis; 6.857033628 7.157133819 7.206797538 7.381326192 90425176 ureC Nitrogen Ammonification Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.746829559 7.649275019 7.523725638 7.291455241 7.473721435 7.368156735 7.366696506 7.780840163 84511211 ahpC Stress Oxygen stress Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 6.983829693 7.279646111 124265706 obgE Stress Radiation stress Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 7.928409688 7.813797071 7.643571856 7.568902412 7.921230875 7.850437651 7.874801136 7.824028126 7.95459272 88787176 SMR_antibiotics Antibiotic resistance transporter Synechococcus sp. WH 7805 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.7085707 7.697002996 7.571180372 6.866009315 7.79785885 7.297944033 7.656740707 7.501506908 7.856774448 179350294 pstC Stress Phosphate limitation Natranaerobius thermophilus JW/NM-WN-LF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Natranaerobiales;family:Natranaerobiaceae;genus:Natranaerobius;species:Natranaerobius thermophilus; 7.007394807 6.839694913 261856381 pstB Stress Phosphate limitation Halothiobacillus neapolitanus c2 7.50243363 7.415828662 7.272535338 7.282661032 7.354938056 7.590827015 7.026595718 7.554965179 119671787 fnr Stress Oxygen stress Azoarcus sp. BH72 7.668812608 8.110763866 8.129214303 8.043365816 8.361222565 8.253577995 8.322407513 8.421311855 38234122 gdh Nitrogen Ammonification Corynebacterium diphtheriae NCTC 13129 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium diphtheriae; 7.093865775 6.850927823 7.007628046 7.23158755 6.979233606 76056949 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.042270621 7.61020904 7.385973703 7.511320399 7.471767977 7.319624726 7.61624312 7.86760405 254547619 RNA_dependent__RNA_polymerase Bacteria phage REPLICATION Enterobacteria phage FI family:Leviviridae;genus:Allolevivirus;species:Enterobacteria phage FI sensu lato; 7.320458457 7.494998365 7.413957577 7.29759545 7.428194815 7.706883772 8.12760538 8.001516546 7.713573374 221734296 ChrA Metal Resistance Chromium Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 7.182037571 7.242246965 7.558698324 7.324465618 7.268183631 7.614301013 7.531429544 7.641308488 7.534466794 241772375 sigma_70 Stress Sigma factors Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 7.457000463 7.492104106 7.753366414 7.178335054 7.595277326 7.596530746 7.608775814 7.642483245 7.361166813 77378687 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.217155814 7.371143622 167348802 ara Carbon cycling Carbon degradation Hemicellulose Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 7.978514178 7.902719931 7.787054668 8.067231636 7.899182135 8.144259706 7.752376618 7.595725052 7.676452299 251847207 mannanase Carbon cycling Carbon degradation Hemicellulose Paenibacillus sp. oral taxon 786 str. D14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 7.524574955 7.436566419 7.459964533 6.696005862 7.223148811 7.396696239 7.47681658 193224505 oxyR Stress Oxygen stress Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 7.59173989 7.411029754 7.136792424 7.321304704 7.300590207 7.342650553 7.113503526 255728049 phoA Stress Phosphate limitation Candida tropicalis MYA-3404 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;genus:Candida;species:Candida tropicalis; 7.73885794 7.334305938 7.31860951 6.964817901 7.199113558 7.552213524 7.128014501 7.358731496 152053 nhh Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7.658159056 7.520537639 7.591281926 7.044973676 7.367274064 7.411696067 7.310973661 46908513 nmoA Organic Remediation Aromatics Nitoaromatics Listeria monocytogenes str. 4b F2365 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria monocytogenes; 7.736613041 7.38015645 7.552592921 7.492175622 7.328827408 83954954 nhh Organic Remediation Aromatics Nitoaromatics Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 7.340041332 7.525077614 7.614989262 7.36038012 7.245193087 7.373615196 7.426343335 7.31501507 53850118 sox Sulphur Sulphur oxidation Pseudaminobacter salicylatoxidans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Pseudaminobacter; 7.96700105 7.621316344 7.645447491 6.965252829 7.769172727 7.690733988 7.574523829 7.649328056 7.519070621 199593969 narG Nitrogen Denitrification uncultured bacterium 7.360434455 7.26850262 6.681855128 7.318688688 7.577132974 189346228 dsrB Sulphur sulfite reductase Chlorobium limicola DSM 245 7.392446997 7.779723369 7.492647637 7.09013836 7.223166497 7.810739142 7.352975317 7.610429944 7.496458365 110632282 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.844488058 7.673950959 7.338900514 7.271789036 7.331206074 7.534814949 260939359 pilin virulence pilin Vibrio orientalis CIP 102891 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 7.804070881 8.117973288 7.654229667 7.879595861 7.704238889 190700723 nmoA Organic Remediation Aromatics Nitoaromatics Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.259029164 7.379097878 7.422061518 7.285499939 7.091888331 7.679080222 6.896672093 7.158338937 6.836609753 109899963 nagG Organic Remediation Aromatics Aromatic carboxylic acid Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 7.322640335 7.305419485 7.532428246 7.062013964 6.816081364 7.328049626 7.24215182 7.43601381 218130859 CopA Metal Resistance Copper Bacteroides eggerthii DSM 20697 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides eggerthii; 7.865268372 7.594954425 7.53328706 7.060069405 7.580474592 7.614187869 7.448768407 7.411944985 114330081 ZntA Metal Resistance Zinc Nitrosomonas eutropha C71 7.706200106 7.459587292 7.407098362 7.335345149 7.569083279 7.234307286 7.275261469 7.545983471 88793715 ppx Phosphorus Phosphorus utilization Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 7.264260692 7.228026748 7.279717188 7.115899006 7.156575303 91797828 Arylest Organic Remediation Aromatics Other aromatics Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 7.754646958 7.950248129 7.685678479 7.138378421 7.747801694 7.631789871 7.82773673 7.272684801 7.68116535 72121957 phtA Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.689307467 7.547130561 94550106 sigma_24 Stress Sigma factors Candidatus Koribacter versatilis Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 7.503076163 7.294009611 7.184774507 7.151882563 7.09119014 7.675340424 7.040771629 7.190483256 7.19275745 71278129 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Colwellia psychrerythraea 34H superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Colwelliaceae;genus:Colwellia;species:Colwellia psychrerythraea; 7.804023373 7.655626623 7.660398556 7.730364851 8.094111442 7.931821147 68347928 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.473549732 7.382295685 7.108612731 7.426467294 7.710941374 7.143111418 7.474777211 83836235 sox Sulphur Sulphur oxidation Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 8.222936645 8.095384275 7.812863027 7.575607391 8.051476766 7.781916008 8.027877718 8.001393552 7.5582474 56478633 nagG Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 8.136524634 7.938499859 7.816356451 8.016937681 7.866653818 7.858487951 7.569618713 157736823 sox Sulphur Sulphur oxidation Arcobacter butzleri RM4018 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Arcobacter;species:Arcobacter butzleri; 7.404335355 7.080740699 6.539263995 7.507873073 219542605 clpC Stress Protein stress Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 7.639064326 7.229245544 7.211390562 6.846998357 7.053043911 149783479 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.517905997 7.184842534 7.467402728 7.016003412 7.574142802 7.760763497 7.496102805 126711044 pcaG Organic Remediation Aromatics Other aromatics Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 7.418621029 7.309907451 7.1857155 7.294569942 7.799322056 7.744271594 7.580043925 7.583544214 7.586514247 4996784 gyrB other category gyrB bacterium rJ12 superkingdom:Bacteria; 8.174744555 7.88266152 7.864558008 7.422222646 7.766393707 8.026380706 7.299399004 7.664957657 7.366058737 109647934 tutFDG Organic Remediation Aromatics BTEX and related aromatics Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 7.807216671 7.693976641 7.63602779 7.59535692 7.790707379 8.046405147 7.719312689 7.643756776 228993479 narI Stress Oxygen limitation Bacillus pseudomycoides DSM 12442 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pseudomycoides; 7.954039659 8.084922326 7.836662791 7.61112362 7.731685957 7.831543093 8.053431617 7.55779928 7.803759325 214042411 ppx Phosphorus Phosphorus utilization Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.652937262 7.584699442 7.734659336 7.442942782 7.291987889 7.936485683 7.260126124 7.516131854 206677616 vanA Carbon cycling Carbon degradation Others Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.489947579 7.512338168 7.179757571 7.521896884 8.1739217 8.203063189 7.823101261 7.745355983 7.677685623 187940054 TerD Metal Resistance Tellurium Pseudomonas aeruginosa superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.39879845 7.006367292 7.009372938 167630152 pstC Stress Phosphate limitation Heliobacterium modesticaldum Ice1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Heliobacteriaceae;genus:Heliobacterium;species:Heliobacterium modesticaldum; 7.374171684 7.37067557 7.130724963 6.764102123 6.766792615 89357951 ChrA Metal Resistance Chromium Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.109118761 7.921756665 7.699531409 8.088721402 8.103365016 7.853035304 7.831499537 7.431132777 912436 amyA Carbon cycling Carbon degradation Starch Geobacillus thermoglucosidasius superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.643273807 7.315092167 7.317497042 7.833594483 7.90022803 7.45235481 7.783003953 7.768514248 169793388 narG Nitrogen Denitrification uncultured bacterium 7.880844676 7.791049917 7.79765173 7.855465816 7.587038613 7.888246414 7.627274873 7.52068658 7.592832386 127511448 cytochrome Energy process Energy process Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 7.113475283 7.707974452 198258866 xylA Carbon cycling Carbon degradation Hemicellulose Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 7.485125562 7.248765808 206746190 pap virulence adhesin Bacillus cereus H3081.97 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 7.424905707 7.325760026 7.188479031 255938253 katE Stress Oxygen stress Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 7.404423956 7.526302623 7.341846191 7.334033695 7.786562568 7.395067956 7.496952021 91793386 amyA Carbon cycling Carbon degradation Starch Shewanella denitrificans OS217 6.878679468 7.119236894 7.280504048 6.936480173 7.160458454 86751201 phn Organic Remediation Herbicides related compound Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.455596198 7.437291744 7.246523417 7.278480384 7.690103336 7.390571416 6.950300871 257386184 pstB Stress Phosphate limitation Halomicrobium mukohataei DSM 12286 7.782250193 7.596081449 7.497693447 7.107990712 7.183087714 7.548748877 7.140672744 7.388029942 219541753 linB Organic Remediation Pesticides related compound Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 7.171274796 7.271401575 6.951210585 6.956354763 6.729079567 7.391997314 7.228505932 7.247108149 145575973 alkB Organic Remediation Other Hydrocarbons Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 7.690463686 7.892393546 7.857652754 7.368251644 7.929132474 7.527981671 8.001274271 7.380821843 83816179 mer Metal Resistance Mercury Salinibacter ruber DSM 13855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 7.661548297 7.529004738 7.402126062 7.227260318 7.609359016 7.535508135 7.243719501 121583372 TerD Metal Resistance Tellurium Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 7.153909011 7.181685905 7.217292478 6.572427326 6.798957643 7.463200057 7.444890572 7.138157416 197117878 pstS Stress Phosphate limitation Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 7.509615535 7.480606854 7.318236639 7.105638658 7.624628222 83647940 pilin virulence pilin Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 7.570951575 7.526671702 159177623 pstA Stress Phosphate limitation alpha proteobacterium BAL199 7.63025088 7.554141892 7.305993761 6.935800463 7.491560685 7.530083934 7.292254291 7.047913674 7.376274005 91693219 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.094844507 7.09145227 238794211 hly virulence hemolysin Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 7.31868132 7.298867275 7.323912471 7.144192854 7.56397434 7.449974522 7.545121081 86144640 katE Stress Oxygen stress Vibrio sp. MED222 7.442935771 7.245763463 7.100581994 6.844086436 6.93411595 7.624734023 7.546135891 7.17112599 7.286584546 108757366 amyA Carbon cycling Carbon degradation Starch Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 8.070515015 7.946198969 7.574746449 7.672602389 7.803003717 7.663627675 7.409151965 7.655741962 7.55983044 126434193 nahA Organic Remediation Aromatics Polycyclic aromatics Mycobacterium sp. JLS 7.171355622 7.403564582 7.092495992 7.062066271 8.123595423 91693323 vanA Carbon cycling Carbon degradation Others Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.879694231 7.73172665 7.606868616 7.772759662 194719525 exoglucanase Carbon cycling Carbon degradation Cellulose Hypocrea virens superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 8.298865496 8.049185466 7.637201915 7.261171788 7.78752917 7.716286328 7.969429553 7.339555879 7.440176603 171678946 ara_fungi Carbon cycling Carbon degradation Hemicellulose Podospora anserina superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 7.423733427 7.188111485 27805138 B_lactamase_A Antibiotic resistance Beta-lactamases Escherichia hermannii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 7.450562422 7.738451185 7.861957521 7.870231859 7.657099196 8.440343179 8.243553072 8.193077132 8.065620649 169006641 ChrA Metal Resistance Chromium Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.694316373 7.732513492 7.660488945 7.744764079 7.803300297 7.953193967 8.122899924 7.893082504 54019042 TerZ Metal Resistance Tellurium Nocardia farcinica IFM 10152 7.697012556 7.646821006 7.048534552 7.100839339 7.773286061 7.949805728 7.566084338 7.497585102 7.824804755 219682687 ppk Phosphorus Phosphorus utilization Bifidobacterium animalis subsp. lactis AD011 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 7.342463291 7.545081932 7.687568148 7.660994 7.602242869 7.551385606 7.266361644 7.437450553 257150762 glnR Stress Nitrogen limitation Lactobacillus rhamnosus Lc 705 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 7.327185883 7.325774539 7.173389694 7.545683598 7.863415986 7.731762973 7.42947172 7.611170936 161389090 proV Stress Osmotic stress Phaeobacter gallaeciensis BS107 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 7.183000215 7.203074639 6.668694877 6.895258542 7.355927419 7.152704714 7.106794862 7.548824672 6644320 gyrB other category gyrB Aeromonas hydrophila superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas; 7.312345672 7.266203098 7.068021685 7.076698169 7.327416974 238921752 pstB Stress Phosphate limitation Edwardsiella ictaluri 93-146 7.593183967 7.435440624 7.286626674 7.473526813 7.461933669 7.698503554 7.303545975 7.290879455 119373652 sigma_24 Stress Sigma factors Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 7.444743429 7.456171785 7.689456587 7.431869403 7.595569382 7.903634901 7.516733753 7.353798935 7.537717381 118424397 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.352455138 7.677882848 7.730803049 7.907095851 7.565018867 7.843268614 7.512203484 7.55657298 7.66189826 83651517 bphF1 Organic Remediation Aromatics Polycyclic aromatics Burkholderia thailandensis E264 7.406998383 7.300221745 7.511181084 7.229405882 7.186555308 7.289931783 7.617628234 7.39046619 261409352 xylA Carbon cycling Carbon degradation Hemicellulose Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 6.942990399 6.964049311 7.268938728 7.030229978 7.406235744 7.230621763 7.020032862 7.20307572 148251806 grpE Stress Heat shock Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.767380947 7.303520235 7.2095232 7.060613213 7.228064949 7.461790047 32308017 narG Nitrogen Denitrification uncultured bacterium 7.932163547 7.807959111 7.8357216 7.666366841 7.679385425 7.860906036 7.892375858 7.848624678 8.213921774 76588543 FTHFS Carbon cycling Acetogenesis Thermoanaerobacter ethanolicus ATCC 33223 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Thermoanaerobacter;species:Thermoanaerobacter pseudethanolicus; 7.038308014 7.035650364 6.967638668 6.831682786 7.022148868 165880001 exoglucanase Carbon cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.104874617 6.812528605 270289710 sigma_70 Stress Sigma factors Chlamydia muridarum Weiss superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Chlamydiaceae;genus:Chlamydia;species:Chlamydia muridarum; 7.365478394 7.188089572 7.368087706 7.203951352 6.926939275 7.131517174 6.976962419 218564186 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.283965453 7.612872244 7.970748021 7.836908035 7.629915882 7.946690305 7.697627612 7.463016862 7.593198032 210073466 BpH Organic Remediation Aromatics Aromatic carboxylic acid Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.281716225 7.247172697 6.596603637 7.229278843 58262224 amyA Carbon cycling Carbon degradation Starch Cryptococcus neoformans var. neoformans JEC21 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Tremellomycetes;order:Tremellales;family:Tremellaceae;genus:Filobasidiella;species:Filobasidiella neoformans; 7.32433082 7.271835237 161395244 SMR_antibiotics Antibiotic resistance transporter Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 6.922674963 7.596520508 7.230488467 7.610871544 223690165 gdh Nitrogen Ammonification Desulfobacterium autotrophicum HRM2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium;species:Desulfobacterium autotrophicum; 7.678409218 7.697473221 7.823759702 7.778834319 7.573691042 7.197536375 7.620601501 110645041 arsenic_resistance_gene Bioleaching Metal Resistance Acidithiobacillus caldus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus; 7.4050401 7.323612052 7.40014841 7.496749823 7.192881441 7.524415663 7.181155263 7.416149789 7.119471712 68537089 katE Stress Oxygen stress Corynebacterium jeikeium K411 8.337704825 8.318499938 8.207093423 8.335012993 8.252757516 8.611070713 8.268829624 8.443081627 8.201500883 219870344 cydA Stress Oxygen limitation Haemophilus parasuis SH0165 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus parasuis; 7.5164971 7.502583179 151362235 nitro Organic Remediation Others Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 8.646788748 8.958729279 8.546651198 8.41251305 8.867244054 8.384583971 8.719478764 8.729118432 8.710221618 160875036 hydrogenase Energy process Energy process Shewanella baltica OS195 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 7.054274965 7.080204416 7.119698441 6.953252789 6.89283875 7.254054926 219678026 sigma_70 Stress Sigma factors gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.57799735 7.551000891 7.21128008 7.305101268 7.245745643 7.630563839 7.5286735 7.569343153 7.075683827 558881 sigma_38 Stress Sigma factors Synechococcus sp. PCC 7002 7.454790099 6.853869392 7.174827665 7.113510726 7.09080008 15894727 Tet Antibiotic resistance other Clostridium acetobutylicum ATCC 824 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium acetobutylicum; 7.643238939 7.302474247 7.207193162 7.29335676 7.458425826 223585990 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.019437421 8.003688305 7.878856234 7.37618039 8.097907282 7.640967948 7.849886856 8.019170493 7.852189769 29607728 pstC Stress Phosphate limitation Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 7.506166287 6.906687558 6.757092394 7.240115458 257870141 hly virulence hemolysin Enterococcus gallinarum EG2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus gallinarum; 7.421425549 7.259210518 7.187560285 7.53294435 7.296207461 7.347794091 7.438608833 7.330267603 145218433 CadA Metal Resistance Cadmium Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 7.945812837 8.009081924 7.832632392 8.099461974 7.721029695 7.911508987 7.430039467 7.594706703 226311661 sigma_70 Stress Sigma factors Brevibacillus brevis NBRC 100599 7.042847349 7.141666433 7.237068393 6.80947197 7.409053109 94969032 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Acidobacteria bacterium Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 7.477833621 7.300620939 7.135107526 7.267802485 7.445449538 7.380082829 70992037 endochitinase Carbon cycling Carbon degradation Chitin Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 7.187150236 7.058566308 7.163501419 6.747173213 6.682559965 7.439053487 7.481968965 7.483051242 7.632065082 104345887 motA Bacteria phage REPLICATION Aeromonas phage 25 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.736053691 7.313653882 7.583053238 7.216769553 7.270760058 7.863121276 7.480451411 7.275554202 7.298269082 88858613 glnA Stress Nitrogen limitation Pseudoalteromonas tunicata D2 7.184357495 7.463678378 227506909 pcc Carbon cycling Carbon fixation Gardnerella vaginalis ATCC 14019 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Gardnerella;species:Gardnerella vaginalis; 7.234124434 7.141622187 261343843 SMR_antibiotics Antibiotic resistance transporter Providencia rustigianii DSM 4541 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 7.569907537 7.907142496 251798815 pstC Stress Phosphate limitation Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.383844322 7.250409944 146279402 hydrogenase Energy process Energy process Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 7.590850703 7.761028821 7.124115012 7.532071788 7.63140607 187725870 ahpC Stress Oxygen stress Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 7.937767367 7.858382713 7.639796073 7.236536061 7.461664755 7.72853097 7.470191647 7.604449742 7.573173946 90304595 endochitinase Carbon cycling Carbon degradation Chitin Coccidioides immitis RS superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides immitis; 7.85578528 7.690473726 7.625578234 7.342679109 7.796963961 7.797963755 7.80240989 7.750600149 7.92255117 160427058 sigma_70 Stress Sigma factors Clostridium phytofermentans ISDg superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium phytofermentans; 6.962187635 7.136851519 7.651015344 7.512342158 7.159150057 7.842323015 7.222000986 7.412354842 7.882527231 242207539 glnA Stress Nitrogen limitation Postia placenta Mad-698-R 7.789073395 7.520045167 7.777012395 7.383710171 7.919921051 7.838377108 7.818578345 7.538824789 7.380134318 167758186 Al Metal Resistance Aluminum Clostridium scindens ATCC 35704 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium scindens; 7.248110562 7.266642692 7.035227088 6.979714656 7.171215297 7.379865401 7.261022556 119378090 pimF Organic Remediation Aromatics Aromatic carboxylic acid Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 7.585545252 7.406306853 7.524392366 7.74754827 8.008275384 110224982 gyrB other category gyrB Streptococcus hyovaginalis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 7.015308364 6.959276419 156837119 katE Stress Oxygen stress Vanderwaltozyma polyspora DSM 70294 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Vanderwaltozyma;species:Vanderwaltozyma polyspora; 6.736684252 7.120950974 32399641 phenol_oxidase Carbon cycling Carbon degradation Lignin Pleurotus sajor-caju superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Lentinaceae;genus:Lentinus; 7.931291271 8.174499825 8.067824266 8.052657625 8.265593976 8.229085065 8.606854665 7.965959909 7.992018277 195364309 bphA Organic Remediation Aromatics Polycyclic aromatics Propionibacteriaceae bacterium MOB600 7.627962204 7.763393969 8.16723804 7.634020097 7.796831321 8.078737002 7.410320336 7.935824983 7.604661263 159887258 glucoamylase Carbon cycling Carbon degradation Starch Methanococcus maripaludis C6 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanococcaceae;genus:Methanococcus;species:Methanococcus maripaludis; 7.233809305 7.436776269 7.319425049 7.047279856 6.814093859 78221757 cytochrome Energy process Energy process Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 8.156428569 7.857981622 8.02390357 8.559799681 8.470418234 8.367777434 8.376846534 8.317590456 146292147 sigma_24 Stress Sigma factors Shewanella putrefaciens CN-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella putrefaciens; 7.550556578 7.552602599 7.326625951 7.080001005 6.987462463 7.55372366 7.0824774 7.455505038 158310020 nitro Organic Remediation Others Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;genus:Acaryochloris;species:Acaryochloris marina; 7.254121169 7.40061904 7.153215744 6.953401342 7.553391251 7.204860777 7.029101075 7.090236924 90820372 clpC Stress Protein stress Lactobacillus salivarius UCC118 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus salivarius; 7.244555663 7.149854611 7.31860951 6.877348659 7.211421909 82737569 rubisco Carbon cycling Carbon fixation Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.484847981 7.424224008 7.187052473 7.191000762 7.066633176 6.878006576 7.168931543 86356955 glnA Stress Nitrogen limitation Rhizobium etli CFN 42 6.984373135 7.10747612 7.577737244 7.296304309 6.990460297 7.89281076 7.194127869 7.072068821 7.241319317 261876697 mannanase Carbon cycling Carbon degradation Hemicellulose Selenomonas noxia ATCC 43541 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas noxia; 7.358575144 7.478962279 7.452154404 7.383133718 124488189 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.309363282 7.347282185 118472516 bphA Organic Remediation Aromatics Polycyclic aromatics Mycobacterium smegmatis str. MC2 155 7.327770126 7.196336986 7.220997553 7.035255642 7.486642753 7.3413743 7.008711482 124257901 bphA Organic Remediation Aromatics Polycyclic aromatics Rhodococcus sp. HDN3 7.765085058 7.659172218 8.110890813 7.976711797 7.54271496 8.395522664 7.886912952 7.897017756 7.584810768 145231532 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.121817387 6.965300431 6.918019551 6.630503911 6.657571979 7.523628732 13816135 acpA_III Bioleaching other category Sulfolobus solfataricus P2 7.320004987 7.313029089 7.045362737 6.956509554 7.421956895 7.607238595 7.462203099 7.048348792 7.584082702 256820030 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Capnocytophaga ochracea DSM 7271 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga ochracea; 7.098880655 7.025763308 6.631496945 7.311860735 67903572 nitA Organic Remediation Aromatics Other aromatics Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.395949248 7.307942073 7.448639804 7.580107884 7.076373063 7.678503915 7.284951889 7.298917763 7.412310733 218564148 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.59647105 7.609658768 7.452051383 7.441100854 7.857398209 7.68846524 7.838387003 7.428678975 7.861257709 158138730 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.887882127 7.326402466 7.052803602 77378519 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.465169141 7.979831916 7.815167807 8.004897533 8.140466213 7.232061455 7.305405381 7.826207604 219951850 nagG Organic Remediation Aromatics Aromatic carboxylic acid Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 7.656648036 8.055512464 7.821892615 7.696354675 8.073897479 7.707668368 7.900750986 7.530785934 91783031 alkK Organic Remediation Others Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.277820071 7.509591393 7.16095479 7.403943887 7.260193074 7.588947913 7.24558048 7.472119687 68344601 alkB Organic Remediation Other Hydrocarbons Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.849473252 7.795376332 7.717637002 7.722434988 7.679189623 7.945547332 7.643687186 7.682235867 7.684617931 46197654 pstC Stress Phosphate limitation Thermus thermophilus HB27 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 7.182552077 7.438011401 7.345695769 6.892554424 7.051661482 7.562118645 7.240288735 7.279796907 7.130229923 219677001 4HBH Organic Remediation Aromatics BTEX and related aromatics gamma proteobacterium NOR5-3 6.945938443 7.139184241 7.078478702 162451215 pstB Stress Phosphate limitation Sorangium cellulosum 'So ce 56' 7.14301478 7.417247329 7.175285073 7.090000708 209171942 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 7.505156208 8.154980497 7.448913367 7.473449904 7.627353717 7.754994538 7.841254345 156865943 ara Carbon cycling Carbon degradation Hemicellulose Clostridium leptum DSM 753 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 7.679091062 7.485708291 7.261003343 7.518985164 7.373856388 7.947760569 7.366493785 7.436774966 161390101 ChrA Metal Resistance Chromium Phaeobacter gallaeciensis BS107 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 6.932222786 6.788853707 144943185 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 8.215110548 8.435511464 7.85270507 7.449389224 7.559631248 7.90329223 8.126205223 8.233089673 262219779 pstS Stress Phosphate limitation Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;species:Grimontia hollisae; 7.529253583 7.411942658 7.573956409 7.254822254 7.532117165 7.614481755 6.967955347 7.181977002 7.219018214 94264244 CopA Metal Resistance Copper delta proteobacterium MLMS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 8.167639984 7.929573607 7.638453192 7.571351719 8.232759663 8.03665004 7.960110113 7.368621261 7.966651304 187724468 pilin virulence pilin Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 7.977370046 7.81457293 7.619053333 7.501907871 8.088609762 7.944123793 7.845334496 7.758762062 7.963610141 94272457 Mex Antibiotic resistance transporter delta proteobacterium MLMS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 7.93692175 7.809557759 7.574977191 7.337133703 7.785569129 8.158661346 7.439542599 7.487528963 8.004056194 146761195 PobA Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas sp. CBS3 7.292098753 7.21710833 6.990809803 7.39351627 27360594 hly virulence hemolysin Vibrio vulnificus CMCP6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 7.716139944 7.562589127 7.570889906 7.425128359 7.950492044 7.774016318 7.886335486 7.908179984 7.589753384 196223753 sigma_24 Stress Sigma factors Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 7.974796259 8.074233917 7.786182974 7.405410838 7.936744382 7.706296799 7.659988167 7.998973721 229817785 phoA Stress Phosphate limitation Bifidobacterium angulatum DSM 20098 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium angulatum; 7.76490595 7.633942113 7.807735862 7.637153385 7.867922261 7.457409892 15552738 mmoX Carbon cycling Methane Methane oxidation uncultured methanotrophic bacterium M84-S38 superkingdom:Bacteria; 7.39666062 7.733632813 7.689123126 7.579531432 7.558743811 7.593649388 7.66530199 7.808818894 56460746 merP Metal Resistance Mercury Idiomarina loihiensis L2TR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina loihiensis; 7.056626134 6.927646673 113473873 ArsC Metal Resistance Arsenic Sphingomonas sp. KA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 7.799930731 7.657646734 7.350817709 7.291965821 7.622438574 8.047247327 7.749094538 7.469731227 7.78916508 222150330 katE Stress Oxygen stress Macrococcus caseolyticus JCSC5402 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Macrococcus;species:Macrococcus caseolyticus; 6.926387052 7.21454472 7.26072057 7.038955127 6.999963057 7.411314919 145569487 narG Nitrogen Denitrification Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 8.181976964 8.075300766 7.974281378 7.999850314 8.201334309 8.408225984 8.29664897 8.255530651 8.087774115 154279208 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Ajellomyces capsulatus NAm1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 8.084742658 8.105494843 7.704354716 7.151620766 8.149831466 7.722365665 7.721313044 7.660339457 7.657991785 3157724 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 7.275173808 7.451262633 7.893242866 8.085225029 7.251735037 7.647046342 7.481015344 255340987 Tet Antibiotic resistance other Flavobacteriaceae bacterium 3519-10 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae; 8.116334349 8.297349784 7.995271257 7.974638302 8.461525327 8.292345368 8.138051899 7.966291966 8.446826087 134093831 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 7.339131576 7.136873315 7.227945065 7.087248089 6.82604563 29345909 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Bacteroides thetaiotaomicron VPI-5482 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides thetaiotaomicron; 7.242699919 7.488253158 7.457010563 7.380879169 7.562695275 77962566 mauAB Organic Remediation Herbicides related compound Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 8.006837297 7.924487825 7.867684532 7.673681957 7.769718054 7.846040522 7.588704678 7.823943559 7.378133678 110646174 alkJ Organic Remediation Other Hydrocarbons Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 7.377717095 7.219546504 7.164965825 7.060744756 7.601286169 7.121089565 7.244148791 38639720 SilE Metal Resistance Silver Klebsiella pneumoniae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella; 7.247653049 7.337088234 7.528988007 7.667271477 7.341930651 7.985946804 7.332399223 7.394755289 110835543 pstB Stress Phosphate limitation Alcanivorax borkumensis SK2 7.677057049 7.55006914 7.645764064 7.483376625 8.008764359 7.992583987 7.891886153 7.745293386 33469581 ChrA Metal Resistance Chromium Alcaligenes faecalis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes; 7.253596317 7.156875277 7.119614998 7.516787171 7.549904963 7.212163532 7.111860933 186472065 phtA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.297141024 7.918698307 7.685179879 221728823 catB Organic Remediation Aromatics BTEX and related aromatics Diaphorobacter sp. TPSY superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax ebreus; 7.321667469 7.465489946 23663958 hly virulence hemolysin Vibrio fluvialis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.218724713 7.174193893 156032698 nitA Organic Remediation Aromatics Other aromatics Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 7.129950261 7.278874507 3329184 ZntA Metal Resistance Zinc Chlamydia trachomatis D/UW-3/CX superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Chlamydiaceae;genus:Chlamydia;species:Chlamydia trachomatis; 7.67631732 7.41656421 7.458482995 7.262572424 7.294216008 7.77752417 7.384510008 7.195444017 7.373761941 24983490 MFS_antibiotic Antibiotic resistance transporter Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.092554751 8.13094664 8.349706248 7.948723133 8.58165722 7.859107777 8.406482829 8.464441795 8.370323711 145563422 dmsA Organic Remediation Others Shewanella putrefaciens CN-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella putrefaciens; 7.270721329 7.336284402 7.45790759 7.079772892 7.370990901 39837110 Catechol Organic Remediation Aromatics Other aromatics Pseudomonas stutzeri superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.750531435 7.091090997 8.020887201 7.421034227 7.344092088 7.073271117 7.107095723 15890159 glucoamylase Carbon cycling Carbon degradation Starch Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.58983759 7.757036129 7.677247823 7.507168347 7.806139754 7.987591265 8.035444102 7.889163173 7.917268988 149771511 SilA Metal Resistance Silver Flavobacterium psychrophilum JIP02/86 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium psychrophilum; 6.983536062 7.454236881 70606376 glnA Stress Nitrogen limitation Sulfolobus acidocaldarius DSM 639 7.270690953 6.717719108 14349112 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Azotobacter sp. FA8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter; 8.10630201 7.707063811 7.544212995 7.237010463 7.614351862 7.803751237 7.727672742 7.370752428 7.444770416 53850902 dsrB Sulphur sulfite reductase anaerobic bacterium EtOH8 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae; 6.896322431 7.186640526 251776983 cytochrome Energy process Energy process Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 7.499050283 7.311131704 7.254465119 6.707965097 7.227594385 7.748944729 7.371384399 7.15537273 7.279800059 170726684 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 7.352824051 7.063960238 7.013396978 7.038734728 6.715462918 7.429093944 19553602 cbdA Organic Remediation Aromatics Chlorinated aromatics Corynebacterium glutamicum ATCC 13032 7.639054006 7.948389891 7.219887434 7.533423503 7.332744962 7.448962607 7.527837164 7.428190931 120593981 cbdA Organic Remediation Aromatics Chlorinated aromatics Polaromonas naphthalenivorans CJ2 8.076651487 7.804323199 7.816609026 7.540837525 8.019659151 7.924409678 7.985682878 7.687116699 7.835404119 118468101 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 7.849294593 8.087526697 8.177073615 7.871018412 7.832723518 110592181 nirS Nitrogen Denitrification uncultured organism 7.283287805 7.028499906 7.691473928 11499260 AprA Sulphur adenylylsulfate reductase Archaeoglobus fulgidus DSM 4304 7.719279822 7.500379117 7.043029054 7.498106896 7.253700732 7.64595451 6.95738814 7.056239822 114187675 ChrA Metal Resistance Chromium Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.946860722 8.031679938 7.759388755 7.65060785 8.194633156 8.058521257 7.779289789 7.925628379 7.952476671 68164594 pcc Carbon cycling Carbon fixation uncultured bacterium BAC17H8 superkingdom:Bacteria; 6.983682536 6.870939367 110338127 Catechol Organic Remediation Aromatics Other aromatics Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 7.490782598 7.629963249 7.785976089 7.784088902 7.662325414 7.830279613 7.482820709 7.855173454 7.417282391 66967859 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.395662906 7.316289274 7.270810348 7.01302881 7.017027024 7.538955893 7.226228472 7.201529694 7.684235198 89572582 mmoX Carbon cycling Methane Methane oxidation Methylomicrobium sp. NI superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomicrobium; 7.346429135 7.305215528 7.386303808 7.161802662 7.155450901 93354836 ZntA Metal Resistance Zinc Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 7.647936974 8.122880063 8.175669854 7.53373512 8.191520466 7.931083906 7.866519888 7.783604647 260424479 iuc virulence aerobactin Cronobacter turicensis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter; 7.692142127 7.679582775 7.679993252 7.630865608 7.386877449 8.115368773 7.671826033 7.85596264 91777973 tfdA Organic Remediation Aromatics Chlorinated aromatics Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.632979937 7.56757518 7.546047385 7.311496285 7.6643189 7.615902065 7.512652736 197777854 pcc Carbon cycling Carbon fixation Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 8.547366978 8.260719415 8.3296361 7.790837043 8.278269799 8.125048039 7.95559937 7.622496477 258585500 pstS Stress Phosphate limitation Vibrio mimicus VM573 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 7.999798249 8.10795937 8.024808399 7.834508735 8.51032118 7.802137806 8.261902109 8.108554282 7.600980569 149825491 gyrB other category gyrB Limnobacter sp. MED105 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 7.448234333 7.558961987 7.491306962 7.22226558 7.692176603 261837313 phoB Stress Phosphate limitation Halothiobacillus neapolitanus c2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Halothiobacillaceae;genus:Halothiobacillus;species:Halothiobacillus neapolitanus; 7.520756428 7.280012426 7.189476135 6.925429269 7.359431675 7.485832879 7.581685792 7.260137959 153012125 rubisco Carbon cycling Carbon fixation Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 7.197839442 7.530807577 7.373107167 7.187176875 6.845420054 7.521277066 7.489888364 7.446631641 7.297201041 225046887 pstS Stress Phosphate limitation Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 7.278336868 6.943644899 7.279820094 7.163682614 7.456274535 7.260762425 7.064696956 6.882580064 58613941 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.786124074 7.527020868 7.40438198 7.612207057 7.262510435 7.402396979 1255468 nifH Nitrogen Nitrogen fixation unidentified bacterium superkingdom:Bacteria; 7.13599721 7.546373093 7.862660672 7.890496385 7.74236404 8.051952472 7.542635625 7.930252993 159905951 pstB Stress Phosphate limitation Methanococcus maripaludis C6 7.063165934 7.249170867 239821631 katE Stress Oxygen stress Ochrobactrum intermedium LMG 3301 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 8.051451835 7.894975087 7.825009417 7.702714526 8.483387399 7.947921508 260778175 proV Stress Osmotic stress Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 7.273915867 7.595990114 7.570725214 25004786 ArsC Metal Resistance Arsenic Bacillus megaterium superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.066720706 6.714049555 7.081657385 270342759 hly virulence hemolysin Dickeya dadantii Ech586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 6.991800025 7.234315733 7.047334253 6.943402171 6.841048249 7.573686368 7.176762989 7.088129718 6.930792438 104345873 endolysin_glycosidase Bacteria phage LYSIS Aeromonas salmonicida bacteriophage 25 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.29365327 7.268117803 7.176068158 260772260 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Vibrio metschnikovii CIP 69.14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio metschnikovii; 7.840329255 7.687028054 7.792938588 7.763507553 8.068329254 7.605745079 7.38285009 7.395384722 56314118 alkK Organic Remediation Others Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 7.425427052 7.486016731 7.601136986 7.01464909 7.546206385 7.381843787 7.648097638 33149015 cydB Stress Oxygen limitation Haemophilus ducreyi 35000HP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus ducreyi; 7.673992659 7.53461213 7.644374502 116013324 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.232729894 7.334299927 6.773475574 7.381971191 167592805 sigma_70 Stress Sigma factors Heliobacterium modesticaldum Ice1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Heliobacteriaceae;genus:Heliobacterium;species:Heliobacterium modesticaldum; 7.393152064 7.279142328 7.200107297 6.943489283 7.284532063 114542980 nreB Metal Resistance Nickel Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.410491145 7.738208482 7.717436475 7.605175009 7.545707736 8.090185797 7.943405766 7.524673009 84515267 sigma_24 Stress Sigma factors Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 6.94449288 7.427690807 7.292867409 6.854055504 7.354859312 6.889381115 6.989549523 153813552 ChrA Metal Resistance Chromium Ruminococcus obeum ATCC 29174 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus obeum; 7.827581958 7.605702709 7.66423736 7.619305853 7.46841101 7.479207439 149816303 linB Organic Remediation Pesticides related compound Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 8.255869213 8.095594467 7.956812344 8.479691877 7.933329142 8.212754289 8.410748779 8.395862807 112463593 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.146360055 7.309180164 7.627698076 7.513727483 7.379776859 7.95376862 7.413012449 7.311375687 7.492537648 257443812 grpE Stress Heat shock Campylobacter gracilis RM3268 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter gracilis; 7.860393165 7.363388868 7.147571682 7.142328521 7.610730522 192811064 CopA Metal Resistance Copper Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.046393671 7.471580964 7.127814414 7.206052225 229311120 grpE Stress Heat shock Listeria grayi DSM 20601 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria grayi; 7.524989825 7.119836923 7.178406211 1595855 amyA Carbon cycling Carbon degradation Starch Cryptococcus sp. S-2 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Tremellomycetes;genus:Cryptococcus; 7.759454903 7.561503158 7.248484955 7.662294276 7.734802933 7.47282238 7.258526416 7.601369643 109452530 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.554052218 7.785040449 7.72139974 7.56982043 8.095376362 8.193725539 8.381498532 8.298345054 21674312 ahpC Stress Oxygen stress Chlorobium tepidum TLS superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 7.461380156 7.316928469 7.210245034 6.998871065 7.030978021 213691058 amyA Carbon cycling Carbon degradation Starch Bifidobacterium longum subsp. infantis ATCC 15697 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 8.040470215 7.98199205 8.149042677 8.147110764 8.007816837 8.661537698 7.918419244 8.10225594 7.996178789 209908220 catB Organic Remediation Aromatics BTEX and related aromatics Enterobacter cancerogenus ATCC 35316 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 8.044320182 7.686281546 7.615094113 7.055779534 7.592449832 7.638752052 7.623041941 7.783472186 7.392606857 153998677 mcrA Carbon cycling Methane Methane production Candidatus Methanoregula boonei 6A8 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;genus:Candidatus Methanoregula;species:Candidatus Methanoregula boonei; 7.449635442 7.585977357 7.592692812 7.886438876 7.463522375 8.010278415 7.604238081 7.677289864 7.610112297 167644528 mauAB Organic Remediation Herbicides related compound Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.553779288 7.875507146 8.295977569 8.263235795 8.059940356 8.038690819 7.892917476 8.087711095 18034311 dsrB Sulphur sulfite reductase Desulfohalobium retbaense superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium; 7.569960143 7.494271064 6.980323746 7.416150624 7.885718286 7.28798677 7.236985784 7.547164203 17937293 pcc Carbon cycling Carbon fixation Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.717763132 7.792463395 7.804753663 7.512697286 8.010820028 7.907720914 7.967243088 7.819227693 7.61346966 148724109 cumA Organic Remediation Aromatics Other aromatics bacterium YT01 8.856789844 8.652182532 8.804902213 8.746244493 8.605529481 8.941903126 8.723779016 8.646001886 9.122043082 229379490 fnr Stress Oxygen stress Oxalobacter formigenes OXCC13 8.124680372 8.347850581 7.920519191 7.744752375 8.026192777 8.010214698 8.001741412 7.814597316 7.964060461 29243578 DNA_polymerase_type_I Bacteria phage REPLICATION Pseudomonas phage gh-1 order:Caudovirales;family:Podoviridae;genus:T7-like viruses; 7.565605235 7.726239517 7.505125468 7.519661241 7.725554492 7.38202912 7.347873139 7.41283831 14024906 phn Organic Remediation Herbicides related compound Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 8.000637522 7.941457903 7.760213308 7.351154434 8.134093051 7.815853112 7.701325228 7.787828749 7.714873083 70606069 GAPDH Bioleaching Carbon fixation Sulfolobus acidocaldarius DSM 639 7.142100262 7.290222725 7.289053319 7.124186467 7.57015814 242213620 ureC Nitrogen Ammonification Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 7.874268558 7.879269668 7.801181775 6.784145951 7.674429654 7.522074946 7.454605383 7.569819594 86138911 pstB Stress Phosphate limitation Roseobacter sp. MED193 6.84004562 6.76001467 7.466450855 251775973 phoB Stress Phosphate limitation Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 7.989004162 8.216018197 7.599176594 7.237114443 7.611030913 7.323807882 7.486494329 7.439701005 218439752 pstA Stress Phosphate limitation Cyanothece sp. PCC 7424 7.481891812 7.264129318 7.140938046 7.072898552 7.233431045 7.181848464 7.16991968 7.330104283 161394256 sigma_24 Stress Sigma factors Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 7.827286022 7.739689194 7.226954354 7.927050106 7.590623326 7.868594072 7.736957219 8.061129751 34761694 phenol_oxidase Carbon cycling Carbon degradation Lignin Rigidoporus microporus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Rigidoporus; 7.838386809 7.83082145 7.733746209 7.557235072 7.680479454 7.758476206 7.501316406 8.044266123 146190352 Arylest Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.334473928 7.329774389 7.453499902 6.989241384 7.905933932 7.550781566 7.515904083 58039597 katE Stress Oxygen stress Gluconobacter oxydans 621H superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter oxydans; 7.650965873 7.575932341 7.849646148 7.862482496 7.615545212 7.850112046 7.523846487 7.427766541 7.207026575 150029499 cellobiase Carbon cycling Carbon degradation Cellulose Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 7.853096018 7.712882302 7.93469878 8.093787356 6.909357339 8.26257045 7.27653345 7.333446694 7.754421769 85069156 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.26326412 7.010993219 7.08099717 151281591 nmoA Organic Remediation Aromatics Nitoaromatics Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 7.75592728 7.576413358 7.58656186 7.643246873 7.436198343 7.533082076 7.823467183 238711476 xylA Carbon cycling Carbon degradation Hemicellulose Yersinia rohdei ATCC 43380 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia rohdei; 7.192341918 7.308980443 7.153510244 6.560421561 7.411149638 7.501739369 7.280423302 6.987116691 7.474810176 229372637 SMR_antibiotics Antibiotic resistance transporter Helicobacter bilis ATCC 43879 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter bilis; 7.528063133 7.463265948 7.423255339 7.543937065 7.653273997 7.407801573 7.167090699 7.242035275 63254774 TerZ Metal Resistance Tellurium Pseudomonas syringae pv. syringae B728a 7.485640039 7.209864455 7.208348872 7.421107419 7.361370343 194011749 katE Stress Oxygen stress Bacillus pumilus ATCC 7061 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pumilus; 7.543590242 7.575761094 7.092090505 7.535316285 7.350652059 7.438700438 7.58352993 184193265 SMR_antibiotics Antibiotic resistance transporter Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.342768318 7.359996394 7.563677813 7.216994952 7.290321769 7.360867472 7.114587967 7.365578672 196205177 linB Organic Remediation Pesticides related compound Cyanothece sp. PCC 8802 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.101403895 7.296396437 7.151456117 70992885 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 7.596729446 7.705921092 7.670549419 7.499182224 7.095820114 7.59509419 7.273942802 7.094131688 7.609727818 29466030 norB Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.359992625 7.807246647 7.374158716 7.289681627 7.305488855 7.40889211 7.544038135 7.507515187 183976680 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.343363 7.002800465 7.592948552 7.121828441 7.734064155 134291716 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 7.919846794 7.937451849 7.577684755 7.44352959 8.202727511 8.123235791 7.915470405 7.618065816 8.209839107 126722029 pcaG Organic Remediation Aromatics Other aromatics Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.519311285 7.184532391 227824948 ctsR Stress Protein stress Acidaminococcus sp. D21 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Acidaminococcus; 7.413787482 7.50456167 7.33256285 7.192083761 7.406413476 238720125 iuc virulence aerobactin Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 7.114542443 6.948499376 114189723 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.461598653 7.522067267 7.076195817 7.419045676 255715393 katE Stress Oxygen stress Lachancea thermotolerans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Lachancea;species:Lachancea thermotolerans; 7.717909499 7.314941098 7.01535219 7.746768082 7.392959994 7.25693425 7.144078197 7.453983276 150837613 nagK Organic Remediation Aromatics Aromatic carboxylic acid Marinomonas sp. MWYL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 7.514359929 7.398570886 7.441114876 6.94025125 7.380933623 7.586779718 7.434391084 7.251197718 7.299087394 171741521 ppk Phosphorus Phosphorus utilization Bifidobacterium dentium ATCC 27678 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium dentium; 7.838442488 7.665104523 7.773430168 7.847648358 8.008903846 8.368496922 8.081437268 8.039593909 7.642888654 85837715 toxin virulence toxin Vibrio sp. MED222 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.176659611 7.565550434 7.221738648 7.255689882 7.360206882 7.568137784 7.194440997 7.246625536 7.462264843 72162277 pimF Organic Remediation Aromatics Aromatic carboxylic acid Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 7.807610785 8.202416815 7.78522645 7.760484553 8.565470758 8.300938607 8.08528437 8.179288777 256398130 sigma_24 Stress Sigma factors Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 8.480081649 8.344059321 8.548376866 8.193696311 8.751193772 8.306136495 8.519767619 8.527628805 8.541577794 224963286 grpE Stress Heat shock Erwinia pyrifoliae Ep1/96 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia pyrifoliae; 7.611370406 7.397027321 222441129 phn Organic Remediation Herbicides related compound Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 7.940259601 7.585495102 7.831496782 7.130307577 7.366093716 7.537419008 7.596130496 7.343197796 7.083777936 18160993 dsrA Sulphur sulfite reductase Pyrobaculum aerophilum str. IM2 7.219313603 7.428709949 7.82769741 7.716169561 7.529479866 7.918000705 7.551877048 7.70878036 7.965428018 237825466 phenol_oxidase Carbon cycling Carbon degradation Lignin Clavariopsis aquatica superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Microascales;family:Halosphaeriaceae;genus:Clavariopsis; 6.800202913 7.091731494 6682326 PobA Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.128244167 7.162111049 7.117252335 7.057325624 7.768036829 7.091480683 6.989344449 70930902 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.120398746 7.128498568 6.958090818 7.209440009 224462435 sigma_24 Stress Sigma factors Methylophaga thiooxidans DMS010 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Methylophaga;species:Methylophaga thiooxidans; 7.622185402 7.211947209 7.214333359 7.222969279 7.676431248 6.957637577 6.975019003 7.424774639 114844670 ChrA Metal Resistance Chromium Thermoanaerobacter ethanolicus X514 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Thermoanaerobacter; 7.233367899 7.132761717 7.377840062 6.839620372 6.825340842 7.366416034 7.101906021 6.899064749 7.309244144 159173974 SMR_antibiotics Antibiotic resistance transporter Vibrio campbellii AND4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.672921953 8.024468625 7.980905239 7.933411592 8.185090454 8.384955322 8.452113804 158112900 CopA Metal Resistance Copper Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 7.381993918 7.456997963 7.651264123 7.78933099 7.595208379 8.171721596 7.488915996 7.334216926 7.542606763 209516468 bphC Organic Remediation Aromatics Polycyclic aromatics Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.579094068 7.508502532 7.483501366 7.086169798 7.714978774 7.630778529 7.314854424 7.682010179 7.223205757 260645656 sigma_38 Stress Sigma factors Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 7.308076532 7.343826436 7.495157958 7.201497141 7.275842796 7.857319246 7.555761096 7.288555672 7.63080485 117578694 ArsC Metal Resistance Arsenic Gramella forsetii KT0803 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Gramella;species:Gramella forsetii; 7.70345813 7.293367365 7.448738453 7.357955106 7.273541856 7.307204423 126716628 CopA Metal Resistance Copper Roseobacter sp. CCS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.168488552 7.146464272 7.350100549 7.190578364 7.28884454 85698453 sigma_32 Stress Sigma factors Nitrobacter sp. Nb-311A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter; 7.560783364 7.662760803 6.952933774 7.202375849 119714877 SMR_antibiotics Antibiotic resistance transporter Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 7.18975189 6.831770717 7.424968357 108461668 vanA Carbon cycling Carbon degradation Others Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 7.975836581 8.452933942 8.673270629 8.597680411 8.707811349 8.590515116 8.818281149 8.339436668 209873331 gyrB other category gyrB Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 7.562183946 7.843499818 7.763341061 7.550438569 7.437123002 7.420903778 8.022053653 7.964864381 194454082 pstB Stress Phosphate limitation Lactobacillus reuteri 100-23 7.137184834 7.295202783 27414453 DNA_polymerase_type_I Bacteria phage REPLICATION Pseudomonas phage PaP3 order:Caudovirales;family:Podoviridae;genus:LUZ24-like viruses; 7.627820199 7.681129625 7.364724291 7.119352639 7.473676658 227342062 fnr Stress Oxygen stress Rhizobium sp. NGR234 7.661502851 7.924940362 8.171927512 8.226207171 8.136039783 8.122388635 1304102 endoglucanase Carbon cycling Carbon degradation Cellulose Humicola grisea var. thermoidea superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;genus:Humicola;species:Humicola grisea; 7.898981515 7.854867099 118593579 glnA Stress Nitrogen limitation Stappia aggregata IAM 12614 7.485635948 7.449401235 7.869030437 7.884478737 7.939928222 7.926916364 7.910989198 7.854910253 7.961899089 27355843 dehH109 Organic Remediation Chlorinated solvents Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.990465013 7.827151303 7.170018952 7.584718739 7.755868843 7.624643009 7.562151815 7.513992643 15898544 terminal_quinol_oxidase Bioleaching Electron transport Sulfolobus solfataricus P2 7.325912118 7.222993878 7.381834736 261823743 proV Stress Osmotic stress Pectobacterium wasabiae WPP163 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium wasabiae; 7.138370567 7.39767603 7.180774558 7.073028696 7.946510478 7.372470464 7.013357548 7.637584354 224282743 clpC Stress Protein stress Bifidobacterium bifidum NCIMB 41171 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium bifidum; 7.100704079 7.09697645 7.149230443 7.042214352 6.877953587 7.60828479 194308665 hrcA Stress Heat shock Pelodictyon phaeoclathratiforme BU-1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 7.354606418 7.595046766 125713637 sigma_38 Stress Sigma factors Clostridium thermocellum ATCC 27405 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 6.985147405 7.239800528 121609632 bphA Organic Remediation Aromatics Polycyclic aromatics Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 7.483751844 7.611088137 7.776311793 7.806182249 7.58706929 7.819531513 7.804459655 8.016531669 14520785 gdh Nitrogen Ammonification Pyrococcus abyssi GE5 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Pyrococcus;species:Pyrococcus abyssi; 7.905920243 7.959098579 7.708642332 7.337805931 7.592046211 113527010 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.065551139 8.036372696 7.77615847 7.486408928 7.893065422 7.668197354 7.579228508 7.710596647 7.973167313 91807182 nosZ Nitrogen Denitrification uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 7.801214664 8.003742081 7.872248893 7.704208097 8.054274962 8.051715215 8.235721635 8.050274433 8.036798612 218295045 CopA Metal Resistance Copper Thermus aquaticus Y51MC23 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus aquaticus; 7.55310371 7.406627724 7.601590389 7.26739305 7.203234818 7.85857875 7.478515657 7.504640556 85689736 ahpC Stress Oxygen stress Erythrobacter sp. NAP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 8.648242989 8.31775935 8.650442226 8.339803926 56314689 mdlD Organic Remediation Aromatics Other aromatics Azoarcus sp. EbN1 7.551436385 7.156047047 16944556 tfdA Organic Remediation Aromatics Chlorinated aromatics Neurospora crassa superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora; 7.333137494 7.371588133 7.1593118 6.843682106 7.265454909 7.195871167 6.923423917 82701632 sigma_38 Stress Sigma factors Nitrosospira multiformis ATCC 25196 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira;species:Nitrosospira multiformis; 7.498585 7.228577305 7.246211626 7.814615568 78192166 phenol_oxidase Carbon cycling Carbon degradation Lignin Pleurotus eryngii superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pleurotaceae;genus:Pleurotus; 6.979107878 7.109172794 7.416959757 6.907046078 7.008392296 7.567224755 220903841 pstC Stress Phosphate limitation Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 7.483652784 7.236740526 7.558323885 7.287687728 7.410718893 7.200073004 7.279309427 187728412 fnr Stress Oxygen stress Ralstonia pickettii 12J 7.518212251 7.778855543 7.51042479 7.201940172 37201254 ahpF Stress Oxygen stress Vibrio vulnificus YJ016 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 7.14096961 6.964873897 6.699295883 7.437711007 6.974786399 6.906460276 187919853 dehH Organic Remediation Chlorinated solvents Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.843868187 7.735855396 7.59186124 7.499307181 7.543616729 7.58564595 7.462026581 7.164753058 88799846 proO Organic Remediation Aromatics Other aromatics Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 7.346792653 7.041787151 50952847 lip Carbon cycling Carbon degradation Lignin Trametes versicolor superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 7.724047831 7.621396 8.145096322 7.519244864 7.968163441 7.902701238 7.829468323 7.743278577 7.564391054 196203633 AceB Carbon cycling Carbon degradation others Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.65956237 7.71617487 85827513 bclA Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.600524884 7.470165677 7.510122761 7.157498082 7.12884043 7.519078854 7.521628851 85831158 mer Metal Resistance Mercury Leeuwenhoekiella blandensis MED217 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Leeuwenhoekiella;species:Leeuwenhoekiella blandensis; 7.382831716 7.276679317 7.247671459 7.458584735 7.42992704 7.203315496 118705647 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 7.380534399 7.488317655 7.557418017 7.129121344 7.566998903 7.574919034 7.640920806 7.442611989 7.735852768 54022495 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 7.862804576 7.430677131 7.362247007 7.370590803 7.463369614 7.511343871 7.426747334 118135501 fnr Stress Oxygen stress Clostridium novyi NT 7.292257529 7.089252925 90410850 ahpC Stress Oxygen stress Photobacterium profundum 3TCK superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 7.355430551 7.412853854 7.397711055 7.089132552 7.366830957 44920698 atzA Organic Remediation Herbicides related compound Methanococcus maripaludis S2 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanococcaceae;genus:Methanococcus;species:Methanococcus maripaludis; 7.110418122 7.274619409 6.705248568 6.973176185 7.520979264 220693259 pheA Organic Remediation Aromatics Other aromatics Aspergillus flavus NRRL3357 7.357905599 7.481437406 7.141042075 6.773884768 7.371570673 7.546455282 7.354455043 7.058381159 60593158 dsrB Sulphur sulfite reductase uncultured prokaryote 7.582345537 7.708546935 7.319363908 7.163194202 7.371601124 7.732645096 7.578850998 7.516878752 7.214953247 17549198 narI Stress Oxygen limitation Ralstonia solanacearum GMI1000 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 7.306817477 6.967071206 6.776354653 145963751 pilin virulence pilin Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 7.227620295 7.118692762 7.249326416 6.818872925 7.16569814 7.595797256 21673694 APS_AprA Sulphur adenylylsulfate reductase Chlorobium tepidum TLS superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 7.689658975 7.435915655 7.364632884 7.395833094 7.798504585 7.306455686 7.423836218 7.268974216 125714337 pstA Stress Phosphate limitation Clostridium thermocellum ATCC 27405 7.593885347 7.271537028 7.342725774 6.801258389 6.889202909 7.54710462 110225000 gyrB other category gyrB Streptococcus peroris superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 7.446205776 7.458622421 7.313117235 7.058975326 7.301170282 7.597894396 145248716 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.321591957 7.0364137 66801875 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 7.98875504 8.120567322 8.191640754 7.788739916 7.711586251 7.813197012 8.19481729 7.880465376 148254221 sox Sulphur Sulphur oxidation Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.003010967 8.13996462 8.216494373 8.415250768 8.830281851 8.408923439 8.680005497 8.625964351 82801443 alkB Organic Remediation Other Hydrocarbons bacterium alkW92 superkingdom:Bacteria; 7.859687141 7.775379733 8.037060455 7.441254487 8.032875186 7.792974528 7.794818043 7.803474287 8.029831033 15075962 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Sinorhizobium meliloti superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium; 7.73611505 7.891556855 7.527450126 7.488710018 7.609616245 7.849715163 7.688113152 7.384619722 7.589011605 66391940 endolysin_glycosidase Bacteria phage LYSIS Aeromonas phage 31 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.589844409 7.488593449 7.018905735 7.095509434 7.077177014 7.499234711 15077498 dsrA Sulphur sulfite reductase Desulfoarculus baarsii superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfarculales;family:Desulfarculaceae;genus:Desulfarculus; 7.556950792 7.676363105 7.593403727 8.074003794 6.787112807 8.204733562 7.294320521 7.529887896 7.707809953 121553537 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 7.880953739 7.497219663 7.604429838 7.199043657 7.754393967 7.888386311 7.65176509 7.526046062 7.809141886 171058731 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 7.794871364 7.508092736 7.521804045 7.509410036 8.176665427 7.546752338 7.698458925 7.574884962 254388305 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 7.845197276 8.674719832 8.435450679 8.067891396 8.147431082 8.007767884 8.651563955 8.052808976 28629151 mnp Carbon cycling Carbon degradation Lignin Bjerkandera sp. B33/3 7.094832412 7.015114471 6.622662673 7.325036092 7.04399986 7.218141971 225194089 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.459073573 7.481742878 7.06006163 7.05456377 119535136 xylF Organic Remediation Aromatics BTEX and related aromatics Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8.185131695 8.225308059 7.952245554 7.575398975 8.327532225 7.826853756 8.063545873 8.164931828 8.085130356 242123745 pstB Stress Phosphate limitation Desulfovibrio salexigens DSM 2638 7.385483867 7.2579807 257456646 nplT Carbon cycling Carbon degradation Starch Treponema vincentii ATCC 35580 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema vincentii; 7.782022915 7.628428175 7.469710662 6.904349359 7.704057176 7.618439891 7.651726197 7.214289397 22138841 exoglucanase Carbon cycling Carbon degradation Cellulose Aspergillus oryzae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 7.632219266 7.546066425 7.389653798 7.707342819 7.566427011 7.863197548 7.612633812 7.477855248 123967128 dnaK Stress Heat shock Prochlorococcus marinus str. MIT 9515 7.347870467 7.429371556 7.106252081 7.449644001 7.677421366 7.728569714 7.719070501 7.477155396 90954629 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.582580936 7.356257643 156628314 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.3574148 7.171822781 7.138859947 7.076386186 7.415249237 167839647 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Burkholderia thailandensis MSMB43 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 7.905240363 7.742163753 7.781105477 110350903 mhpC Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus aetherivorans superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7.764556821 7.620110392 7.293846857 7.067417156 7.012854601 7.329285363 7.277531759 62391903 pcpE Organic Remediation Herbicides related compound Corynebacterium glutamicum ATCC 13032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 8.032041839 7.63692774 7.728869804 7.13667032 7.552526502 7.689079016 7.691902715 7.648568719 218440967 AceA Carbon cycling Carbon degradation others Cyanothece sp. PCC 7424 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.443444104 7.093626144 7.214517793 6.809611444 7.533269956 6.917766885 7.467888206 145591125 ArsA Metal Resistance Arsenic Pyrobaculum arsenaticum DSM 13514 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum arsenaticum; 7.432290016 7.093393823 7.131583239 6.903000894 6.865905181 7.473788762 115377125 phoB Stress Phosphate limitation Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 7.939575888 7.553782778 7.422590549 7.171934578 7.668278943 7.45018238 7.502262411 7.648801303 1402841 lip Carbon cycling Carbon degradation Lignin 7.891408594 7.655433277 7.85898512 8.043421746 7.666819425 78518060 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.2557089 8.056851517 8.242639057 7.530751137 8.184921732 8.285475736 7.972994417 8.161213899 116107300 ZntA Metal Resistance Zinc Lactococcus lactis subsp. cremoris SK11 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Lactococcus;species:Lactococcus lactis; 7.400296355 7.466275809 7.301810945 6.901922683 7.320626879 95132760 grpE Stress Heat shock Desulfuromonas acetoxidans DSM 684 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Desulfuromonadaceae;genus:Desulfuromonas;species:Desulfuromonas acetoxidans; 7.724146209 7.426726806 7.540259002 7.609774191 7.524654096 116125952 gyrB other category gyrB Leptospira borgpetersenii serovar Hardjo-bovis JB197 7.225166284 7.068083643 7.191006808 6.505611188 7.53550844 6.782730581 6.708556663 7.227804764 116252631 ArsC Metal Resistance Arsenic Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.357906787 7.101675792 209523020 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Arthrospira maxima CS-328 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira maxima; 7.25711785 7.249441769 7.174589207 6.867945745 7.465769766 38194106 Xamo Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 7.988303988 7.961051854 7.619099563 7.414037155 7.821564076 7.738814728 7.741564242 7.77769903 90311353 sigma_70 Stress Sigma factors Psychromonas sp. CNPT3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas; 7.170431601 7.1229557 7.458719408 7.436906859 6.561631623 6.987419151 7.164744297 7.221952409 194015422 CopA Metal Resistance Copper Bacillus pumilus ATCC 7061 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pumilus; 7.239020998 7.015400867 6.421892905 7.448461158 52787891 cellobiase Carbon cycling Carbon degradation Cellulose Bacillus licheniformis ATCC 14580 7.415069771 7.357061293 7.298486476 7.376449957 7.49066326 7.432531743 7.190491643 7.035553216 167357559 xylA Carbon cycling Carbon degradation Hemicellulose Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.312553449 7.432027434 7.151984956 7.082134799 6.993604685 7.439468049 7.345335715 7.505457582 116694569 glnA Stress Nitrogen limitation Ralstonia eutropha H16 7.542618657 7.602678083 7.471085551 7.820530987 8.309229023 8.117204993 7.859727488 7.769848951 118413414 obgE Stress Radiation stress Campylobacter fetus subsp. fetus 82-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter fetus; 7.375227587 7.306218129 7.246346936 6.879709028 7.23986492 7.50089244 6.962625724 7.324456403 18034247 APS_AprA Sulphur adenylylsulfate reductase Desulfobacter postgatei superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacter; 6.994363058 6.901238244 22538097 phoB Stress Phosphate limitation Streptococcus agalactiae 2603V/R superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus agalactiae; 7.530010458 7.324783599 7.41574026 7.087513691 7.318922013 7.129447972 7.052959056 218658533 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.443565197 7.714596263 7.458724762 7.503302761 7.560971405 7.906853047 7.859546441 7.710073057 7.513350379 87283942 ureC Nitrogen Ammonification Synechococcus sp. WH 5701 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.048253074 7.280243671 7.014599534 7.427590767 7.077633244 7.301988907 7.180207725 7.527889711 229498059 pcc Carbon cycling Carbon fixation Geobacillus sp. Y412MC52 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 6.992518775 6.896770837 7.47073045 94968349 ChrA Metal Resistance Chromium Acidobacteria bacterium Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 7.962472023 7.786921307 7.904060663 7.905415626 8.089357545 8.336554547 8.395536189 8.171660085 7.902156159 73535056 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.201132117 6.842580972 6.90567233 217991638 ppk Phosphorus Phosphorus utilization Bacteroides pectinophilus ATCC 43243 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides pectinophilus; 7.698664621 7.703359971 7.404208026 7.388775011 7.449953681 256036088 sigma_24 Stress Sigma factors Chitinophaga pinensis DSM 2588 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 7.462970735 7.608789258 7.533386653 6.973903435 7.796831321 7.825066863 7.7917513 7.711523478 7.4472296 224595026 pstC Stress Phosphate limitation 'Nostoc azollae' 0708 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena azollae; 7.091446335 7.099151335 7.087848385 6.997769024 7.54834052 211958617 proX Stress Osmotic stress Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 6.855913594 6.781248972 7.019393633 6.710214494 6.662483282 225700175 nplT Carbon cycling Carbon degradation Starch Streptococcus equi subsp. equi 4047 7.418017188 7.038534878 33391427 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.510938226 7.592325671 7.836126765 8.232514625 7.853260095 7.773623955 7.644976273 7.594785134 7.579112074 15603341 gyrB other category gyrB Pasteurella multocida subsp. multocida str. Pm70 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Pasteurella;species:Pasteurella multocida; 6.718588797 6.937635635 7.075857946 6.891575151 6.977429522 67901754 xylanase Carbon cycling Carbon degradation Hemicellulose Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.004135062 7.287712083 260862399 glnA Stress Nitrogen limitation Selenomonas sputigena ATCC 35185 7.036357561 7.153086454 37962809 ChrA Metal Resistance Chromium Salmonella typhimurium superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 7.863963345 8.15127868 7.936348727 7.294471767 8.035715404 7.828611184 7.714221478 7.617568052 7.986357954 161382919 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 7.306691414 7.376182033 7.933073074 7.771246928 7.977311238 7.851125986 7.738264473 8.045745665 7.873563534 217399578 pcc Carbon cycling Carbon fixation Bifidobacterium gallicum DSM 20093 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 7.543230968 7.325709566 7.473603923 7.586168085 7.19148211 7.728942086 7.254746779 7.020346075 7.60790756 89346817 nagG Organic Remediation Aromatics Aromatic carboxylic acid Rhodoferax ferrireducens DSM 15236 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 7.52725587 7.099507444 7.30987266 7.514951286 7.764173863 7.552690051 7.311323666 7.468733551 145298100 CorC Metal Resistance Cobalt Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 8.026648643 7.855319903 7.682977802 7.154002683 7.72871544 7.506828116 7.555200025 7.728629318 7.439272604 229327711 katE Stress Oxygen stress Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 7.251657492 7.123157112 222085375 ArsC Metal Resistance Arsenic Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.450269544 7.353666599 7.230957963 7.081865471 7.451702021 7.556527355 7.54086495 7.578020579 260222923 MFS_antibiotic Antibiotic resistance transporter Curvibacter putative symbiont of Hydra magnipapillata 7.388612523 7.390611145 7.580283072 7.06249489 7.614827353 7.105275624 7.306944224 156526383 dmsA Organic Remediation Others Vibrio harveyi ATCC BAA-1116 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 7.405872062 7.230573595 7.380968091 118619097 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 7.320752339 7.325585673 7.52286906 7.146910971 7.155302542 7.506339001 7.196978113 7.709099946 7.417167657 86567242 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia sp. CcI3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.184071155 8.497895296 8.392885827 8.313830383 8.676936873 8.245374342 8.440591655 8.744702387 8.700604837 207367117 mnp Carbon cycling Carbon degradation Lignin Lentinula edodes superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Lentinula; 7.325859934 7.412312643 7.309894555 7.16311726 6.938804114 7.500283775 7.114929552 7.251852741 118168989 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 7.485938577 7.118710965 7.551567952 7.800121966 7.183436866 7.731504454 7.362214672 7.609266457 89081231 SMR_antibiotics Antibiotic resistance transporter Oceanospirillum sp. MED92 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Neptuniibacter; 7.137540167 6.946709175 7.058562985 7.008051078 149178895 phoB Stress Phosphate limitation Planctomyces maris DSM 8797 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces maris; 7.341745776 7.136684683 6.68773531 7.517529357 116098798 gyrB other category gyrB Lactobacillus brevis ATCC 367 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus brevis; 7.462339148 7.450222654 7.501735114 7.438825537 7.048449483 7.50576354 7.164091924 7.311955165 7.003610284 82945047 pstB Stress Phosphate limitation Magnetospirillum magneticum AMB-1 7.63762576 7.609034391 7.519897837 7.724884505 169759556 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.131080232 7.958849304 8.166261183 7.591376119 8.27944734 8.332536119 7.92493754 7.941773144 8.149321758 27657369 nhh Organic Remediation Aromatics Nitoaromatics uncultured bacterium SP1 superkingdom:Bacteria; 7.686505893 7.315264705 7.357539326 7.333553348 7.016602603 83404790 nirS Nitrogen Denitrification uncultured organism 7.585177129 7.545430023 8.184496205 7.944277565 7.668919833 7.964143733 89241984 rubisco Carbon cycling Carbon fixation Lyngbya aestuarii PCC 7419 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Lyngbya;species:Lyngbya aestuarii; 8.781608072 8.218268165 8.312002078 8.064020125 8.166383032 8.03992033 8.498710864 226184811 NirB Nitrogen Assimilatory N reduction Rhodococcus erythropolis PR4 7.119798352 7.134653899 7.578120607 7.95500139 7.411783433 7.401247771 7.49041603 7.708311748 114327150 AceA Carbon cycling Carbon degradation others Granulibacter bethesdensis CGDNIH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 7.609171426 7.282815192 7.114201369 6.880396084 7.043333704 7.551890502 82524125 cda Carbon cycling Carbon degradation Starch unidentified microorganism 7.957111087 7.852609336 7.638533037 7.683774213 7.430015076 7.90700527 7.753553481 7.652133257 7.680557654 224418749 glnA Stress Nitrogen limitation Helicobacter canadensis MIT 98-5491 7.476038566 7.89075802 7.395505351 7.566330249 7.919038053 7.751067266 8.073933847 8.003601417 7.656727032 98978005 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Sphingopyxis alaskensis RB2256 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 8.119641374 7.632505792 7.199951996 7.537129009 7.54232579 8.343882333 7.644919273 7.550652848 6460740 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Deinococcus radiodurans R1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 8.070315542 8.048984779 7.791465489 7.631316872 8.040342836 8.188146297 7.886039889 7.616642974 8.034146967 257149117 ABC_antibiotic_transporter Antibiotic resistance transporter Lactobacillus rhamnosus GG superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 7.391339174 7.241224548 7.631704331 7.844963465 7.013355615 8.107627308 7.419016607 7.798255021 197713028 ara Carbon cycling Carbon degradation Hemicellulose Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 7.946759256 8.004704395 7.919346798 7.150849113 8.314726789 7.55589191 7.831640889 7.761098869 165879987 exoglucanase Carbon cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.221609588 7.104399753 7.292661709 7.003091468 7.542246014 7.701292913 7.463533973 188029709 ahpC Stress Oxygen stress Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 7.120210359 7.151118835 7.061409343 6.834976475 6.846960503 67921479 pstB Stress Phosphate limitation Crocosphaera watsonii WH 8501 7.352164065 6.918729018 6.589478639 7.515397334 196482350 tfdA Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 6.992359105 7.224441963 7.048472156 6.712651921 7.011269959 7.515673066 150376517 sigma_24 Stress Sigma factors Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 7.257901674 7.267892184 7.606326988 6.985676088 7.432166389 7.439619613 7.530902737 7.45927883 85775236 TerC Metal Resistance Tellurium Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 7.323557331 7.461794597 163669292 ChnA Organic Remediation Other Hydrocarbons Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 7.2782365 7.385018649 7.326531138 6.962760145 7.193121058 7.751183554 7.20875691 7.173414831 189425041 mer Metal Resistance Mercury Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 7.322303843 7.762136784 7.345304624 8.068477166 6.750363119 183175388 clpC Stress Protein stress Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 7.96086331 7.761228765 7.600516539 7.713179454 8.148798774 8.140934416 8.161538356 8.206185704 8.114183491 148251640 MATE_antibiotic Antibiotic resistance transporter Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.667635875 8.040688188 7.641933048 7.903185361 8.070160096 8.066076971 8.02196374 8.229886484 7.494753859 217402269 amyA Carbon cycling Carbon degradation Starch Bifidobacterium angulatum DSM 20098 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium angulatum; 9.40068601 8.592634411 9.052116928 116225158 sigma_24 Stress Sigma factors Candidatus Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 7.408569524 7.419231911 7.318135298 7.123734061 7.697298876 7.346153314 7.363604941 7.593399614 18034235 APS_AprA Sulphur adenylylsulfate reductase Desulfococcus biacutus superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus; 8.117396758 7.820240306 7.496132096 7.318120317 7.831282298 7.800555138 7.628903024 7.793110811 15022489 phenol_oxidase Carbon cycling Carbon degradation Lignin Botryotinia fuckeliana superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia; 7.81039376 7.423276115 7.232709684 7.099878462 7.543001368 7.875520935 7.566577692 7.652302376 115436746 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.517044149 7.246867221 7.17648258 7.561729618 7.249129164 7.835897346 84623125 pilin virulence pilin Xanthomonas oryzae pv. oryzae MAFF 311018 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 7.979208945 7.742914701 7.428424325 7.370903436 7.379349021 7.576987116 90332985 linB Organic Remediation Pesticides related compound marine gamma proteobacterium HTCC2207 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.280565325 7.289744754 6.998472314 6.813575738 7.571926913 7.012065682 7.170457258 94309957 chnB Organic Remediation Other Hydrocarbons Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.004161512 8.004815889 7.936560961 8.047167467 8.042710796 8.291486469 7.702585281 7.691714762 7.632952815 94417716 ppx Phosphorus Phosphorus utilization Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 7.818254139 7.486848798 7.395106776 7.403778899 7.288917458 7.101248459 7.159680378 62636158 lysin Bacteria phage LYSIS Bacteriophage 37 order:Caudovirales;family:Siphoviridae; 7.299560005 7.301954118 7.5337329 6.933461991 7.058762676 7.782045556 7.509282853 7.109317463 7.312232917 73537611 nagG Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 7.737261598 7.426701604 7.582249064 7.018779315 7.024311697 7.618302713 7.092748981 7.496998897 7.15162846 189911455 linC Organic Remediation Pesticides related compound Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira biflexa; 7.395767496 7.181308091 61660056 CDD Organic Remediation Aromatics Other aromatics Pseudomonas putida 7.565274761 7.6366439 7.814752368 7.373531208 8.007123742 7.921368128 7.764040548 7.875178029 85703886 aoxB Metal Resistance Arsenic Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.659225999 7.708276723 7.753991186 7.781318063 7.777794997 7.920554919 7.866541216 7.48884976 212702496 atzA Organic Remediation Herbicides related compound Desulfovibrio piger ATCC 29098 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio piger; 7.480048336 7.515482512 7.579804409 7.730471855 7.461613782 7.750948635 7.443883878 7.34290261 7.503616791 163745331 pimF Organic Remediation Aromatics Aromatic carboxylic acid Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 7.505891345 7.326281569 7.383970059 6.886643497 7.583015797 209547726 dehH Organic Remediation Chlorinated solvents Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 6.930026441 7.150316999 7.117560764 7.118403342 7.163994876 7.143495101 7.082287763 6.964883189 33320459 dsrA Sulphur sulfite reductase Desulfohalobium retbaense superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium; 7.722811572 7.819902766 8.168708132 7.161086522 7.463619567 7.875902538 7.792421759 227195629 pstB Stress Phosphate limitation Lactobacillus ruminis ATCC 25644 7.669734928 7.341219344 7.508630132 7.200715934 7.479613723 7.837726416 7.984967676 7.568235259 196233134 fnr Stress Oxygen stress Chthoniobacter flavus Ellin428 7.704064525 7.970318439 7.599560735 6.967620303 7.690723969 7.788254501 7.768007588 7.21860594 7.745599733 193888336 thmAB Organic Remediation Others Rhodococcus sp. YYL 7.224058367 7.438929194 7.29246012 6.863322252 6.87091345 7.808151182 118472122 mhpC Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 7.823081118 7.915226976 7.821946177 7.426973059 8.22803274 7.668271332 7.730978715 7.68600347 7.890225363 94500890 ahpF Stress Oxygen stress Oceanobacter sp. RED65 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Bermanella; 8.10075836 7.72008299 8.143778847 7.784370842 8.528374925 8.168211897 7.959369375 8.225515139 269795995 sigma_24 Stress Sigma factors Sanguibacter keddieii DSM 10542 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Sanguibacteraceae;genus:Sanguibacter;species:Sanguibacter keddieii; 7.432019938 7.269638358 7.045025472 7.330161406 6.86739988 19112621 ZntA Metal Resistance Zinc Schizosaccharomyces pombe 972h- 7.004510578 7.427584648 116610556 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.934262595 7.870934222 7.481388699 7.405586524 8.128505803 7.7144899 7.795097736 7.604737965 7.889354858 224367449 gdh Nitrogen Ammonification Desulfobacterium autotrophicum HRM2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium;species:Desulfobacterium autotrophicum; 7.296088137 7.258039805 7.586508062 7.408949877 7.206613527 7.432359385 125999749 iro virulence Shewanella baltica OS155 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 7.809751168 7.387263476 7.919391613 7.292408485 7.701492285 7.853238975 7.555595514 7.505508689 90331998 Xamo Organic Remediation Other Hydrocarbons marine gamma proteobacterium HTCC2207 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.666961203 7.324514931 7.089985363 7.449972438 7.479126729 7.079761537 7.253247401 86750253 nosZ Nitrogen Denitrification Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.013884839 8.058906336 7.698916712 8.329770158 7.987527795 8.103327815 8.035552115 8.064575601 7.651916101 188481077 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.416311686 7.279935315 7.569962992 7.02853918 6.982284306 259503573 glnA Stress Nitrogen limitation Lactobacillus antri DSM 16041 7.481909584 7.421841497 7.644751937 7.475716844 196232822 sigma_70 Stress Sigma factors Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 7.723893387 7.668802585 7.306265015 229499053 AceA Carbon cycling Carbon degradation others Geobacillus sp. Y412MC52 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.213834407 7.62133318 7.458921746 7.900137473 7.314838519 7.287292795 227115542 ahpF Stress Oxygen stress Pectobacterium carotovorum subsp. brasiliensis PBR1692 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 7.361458404 7.673710287 7.714921016 7.638583253 7.371002274 7.999913433 7.816890213 7.719035898 7.633486061 222148751 CopA Metal Resistance Copper Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 8.078323736 7.662182224 8.004802663 7.255890766 7.65648502 7.82120097 7.70978093 7.759889752 7.615306367 218961172 cap virulence capsule Candidatus Cloacamonas acidaminovorans superkingdom:Bacteria;genus:Candidatus Cloacamonas; 7.571971631 7.417265608 7.225689391 122091101 NiR Nitrogen Assimilatory N reduction Yersinia enterocolitica subsp. enterocolitica 8081 7.995770314 7.747956117 7.339756729 7.586665129 7.3554177 7.89516477 7.185789963 7.148924349 7.327611261 71743269 pulA Carbon cycling Carbon degradation Starch Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 7.624784442 7.631123933 7.435308253 7.308609368 7.339261572 7.785561938 7.517222924 7.209744429 156446935 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.611636864 7.810442704 7.583641973 7.473460152 7.549069843 8.093966913 7.53290994 7.286988248 7.368542211 194364599 ppx Phosphorus Phosphorus utilization Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 7.785267423 7.782581139 7.720607058 7.052495331 7.876770975 7.538048766 7.420830015 8.004495931 154686653 pcc Carbon cycling Carbon fixation Bacillus amyloliquefaciens FZB42 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 7.741989577 7.376636554 169762876 ara_fungi Carbon cycling Carbon degradation Hemicellulose Aspergillus oryzae RIB40 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus oryzae; 8.000472196 7.948352971 7.90860382 7.623555969 7.688804657 7.514514118 7.636708039 7.647455311 78707345 gyrB other category gyrB Acholeplasma equifetale 7.187932257 7.06449104 167839931 pcaG Organic Remediation Aromatics Other aromatics Burkholderia thailandensis MSMB43 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 7.722025236 7.944219703 7.79392446 8.24725543 8.006107416 8.160510844 8.4416691 8.331633564 168205311 srt virulence surface protein Clostridium perfringens E str. JGS1987 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium perfringens; 7.364953295 7.021306213 61808038 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.17356328 7.178669658 156189724 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 7.607247871 7.557304718 7.682867619 7.30852469 7.800082601 7.724906839 7.557125009 7.669019488 7.359504778 30250065 phoB Stress Phosphate limitation Nitrosomonas europaea ATCC 19718 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas europaea; 7.613036404 7.653398671 7.547872484 7.294545388 7.601452948 7.512713767 7.684240178 7.843906248 7.434327528 208605300 hao Nitrogen Nitrification uncultured planctomycete superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales; 6.887319046 7.236177895 7.423737508 7.197199599 7.662367118 7.710306797 7.830520069 7.335099057 77732597 nhh Organic Remediation Aromatics Nitoaromatics Rhodococcus opacus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7.826913742 7.661361985 7.614036137 7.371380684 7.734598245 7.383762669 7.504396846 115390617 pheA Organic Remediation Aromatics Other aromatics Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.996242413 7.883028692 7.64867362 7.583881147 8.026638248 8.069640255 7.861985783 7.462486704 7.880982516 189208153 phenol_oxidase Carbon cycling Carbon degradation Lignin Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7.482582215 7.664478818 7.712890745 6.897767201 7.360873833 7.509988226 7.258004696 7.741477239 177842240 ara Carbon cycling Carbon degradation Hemicellulose Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 7.80032849 7.857081854 7.837014662 7.373497194 7.802621324 7.749362781 7.788196126 7.472632114 7.730922424 54125545 gyrB other category gyrB Serratia sp. MF 426 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 7.191620553 6.996047341 37524235 pstC Stress Phosphate limitation Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 8.259672958 7.696711117 7.835462131 7.649257867 7.57454046 7.42291224 7.386558571 7.275104387 148258707 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.131698556 7.148948991 7.833074237 7.205022437 7.344550862 7.041646365 7.045182341 266629650 fnr Stress Oxygen stress Caulobacter segnis ATCC 21756 7.874703152 7.718262808 8.132147008 8.300397834 8.145741055 8.232922918 7.864963796 8.103124949 7.884383796 147851848 sigma_70 Stress Sigma factors Synechococcus sp. RCC307 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.67490747 7.830554247 7.771387821 7.593828005 7.532118961 7.491918484 170693430 pilin virulence pilin Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 7.344147382 7.713807108 7.257682104 7.425688033 7.118150475 7.673794112 7.482293607 7.42353161 224944414 narI Stress Oxygen limitation Corynebacterium matruchotii ATCC 33806 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium matruchotii; 7.616505653 7.713472927 8.072394282 8.250012549 8.08325495 8.365932287 8.119378156 7.885537027 8.07546508 188030614 pstC Stress Phosphate limitation Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 8.18783221 7.984176714 7.55352546 7.723350254 7.789502108 8.051961166 7.906215731 7.614532348 7.469218365 12248110 terminal_protein_linear_DNA_phage Bacteria phage REPLICATION Bacillus phage GA-1 order:Caudovirales;family:Podoviridae;genus:Phi29-like viruses; 7.81756865 7.60326281 7.426656072 7.051048709 7.47713772 7.676404837 7.540953558 7.395610525 189910485 Arylest Organic Remediation Aromatics Other aromatics Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira biflexa; 6.787005749 6.860395805 21436536 sox Sulphur Sulphur oxidation Paracoccus denitrificans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 7.772070445 7.786830202 7.415550706 7.572862078 7.7265547 8.0918879 7.540140034 7.267041247 37651309 nagI Organic Remediation Aromatics Aromatic carboxylic acid Xanthobacter polyaromaticivorans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter; 7.31795255 7.321611712 7.108845729 11693061 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 7.216581774 7.560328983 7.33835316 7.243637412 7.545682925 76164407 linB Organic Remediation Pesticides related compound Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 7.415357438 7.31856389 7.27066915 7.284558673 7.598173733 7.692443687 7.796357698 7.58800053 7.674686403 111150931 MFS_antibiotic Antibiotic resistance transporter Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 7.788075163 7.824821964 7.672855546 7.549203052 8.068501019 7.897433509 7.865073581 7.74444554 7.961091648 209896437 TerC Metal Resistance Tellurium Enterobacter cancerogenus ATCC 35316 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 7.100834263 7.223360994 7.456179716 7.299068158 7.68209682 6.76418475 6.977419145 7.056673479 187728538 bphF1 Organic Remediation Aromatics Polycyclic aromatics Ralstonia pickettii 12J 7.484377224 7.666987651 7.693640479 7.238659414 7.480171473 7.755912074 7.368784301 7.402508923 7.53685494 41058594 groEL Stress Heat shock Candidatus Blochmannia sansabeanus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Candidatus Blochmannia; 6.947307008 6.935541776 160945385 ChrA Metal Resistance Chromium Faecalibacterium prausnitzii M21/2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Faecalibacterium;species:Faecalibacterium prausnitzii; 7.360588642 7.268795764 7.309896796 7.567860691 32816567 endochitinase Carbon cycling Carbon degradation Chitin Chromobacterium sp. C-61 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium; 7.280042309 7.445295108 7.47764933 7.107206883 6.782541949 7.480532382 229809112 obgE Stress Radiation stress Collinsella intestinalis DSM 13280 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella intestinalis; 6.801773952 7.198881815 116251120 B_lactamase_A Antibiotic resistance Beta-lactamases Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.24905217 8.157986547 8.145716464 8.237297562 8.45084556 60476359 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.612478297 7.359545731 7.558244699 7.618934438 7.680991471 7.570356014 7.335842637 7.448321165 84515011 BchY other category chlorophyllide reductase Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 7.559888998 7.024642633 7.881590994 7.304252213 7.266384964 7.329083278 164655612 ureC Nitrogen Ammonification Malassezia globosa CBS 7966 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Exobasidiomycetes;order:Malasseziales;family:Malasseziaceae;genus:Malassezia;species:Malassezia globosa; 7.620361611 7.326205822 7.285390544 6.879662121 6.970755221 7.167816456 119434078 nphA Organic Remediation Aromatics Nitoaromatics Arthrobacter sp. JS443 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.096117394 7.2594265 7.475819042 7.29873836 7.467476206 7.786307612 7.646354821 7.394372352 7.901844678 258544979 iro virulence Cardiobacterium hominis ATCC 15826 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Cardiobacteriales;family:Cardiobacteriaceae;genus:Cardiobacterium;species:Cardiobacterium hominis; 7.126116175 6.682969404 6.957596242 6.865689129 7.412694052 162284235 xylA Carbon cycling Carbon degradation Hemicellulose Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 7.380539524 7.100635022 7.16630215 6.869640256 7.394770699 2578377 AceB Carbon cycling Carbon degradation others Mycobacterium leprae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.160624984 8.173457027 7.779563712 7.761561788 8.155461016 8.435526473 8.069946641 7.789875597 7.681062345 224942062 sigma_70 Stress Sigma factors Eikenella corrodens ATCC 23834 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Eikenella;species:Eikenella corrodens; 7.454062804 7.479006362 7.139766291 7.302299281 7.829330775 7.830400231 7.252196078 7.341980999 76874418 arcA Stress Oxygen limitation Pseudoalteromonas haloplanktis TAC125 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas haloplanktis; 7.063249642 7.265072149 7.342701272 7.003460823 6.833168899 7.373206282 7.529595192 7.445694614 163739874 alkB Organic Remediation Other Hydrocarbons Phaeobacter gallaeciensis BS107 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 7.588701711 7.752444382 7.793731596 6.927618338 7.619694847 7.838800624 7.363899816 7.250874082 7.733265199 197286233 TerD Metal Resistance Tellurium Proteus mirabilis HI4320 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 7.148971732 7.168699149 6.843529076 7.445632916 73745626 mmoX Carbon cycling Methane Methane oxidation Methylomonas sp. GYJ3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomonas; 7.564616677 7.452507425 6.747713864 7.260658053 7.482311081 7.08478898 226820471 nplT Carbon cycling Carbon degradation Starch Lactobacillus gasseri MV-22 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus gasseri; 7.557492298 7.601399985 7.339345665 7.219702357 7.205292097 7.516348713 7.121426415 7.354115844 7.487322231 147885988 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 7.269902316 7.371113399 7.181766969 7.444628232 7.054953822 7.448045008 7.201322593 7.306772529 210629900 CopA Metal Resistance Copper Collinsella stercoris DSM 13279 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella stercoris; 7.400491739 7.260141378 7.522915266 7.195934465 7.030000349 6.981471432 7.055764946 67902766 pheA Organic Remediation Aromatics Other aromatics Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.535706046 6.989851322 7.189037208 7.453751029 6.943174557 7.258533392 7.522363942 254463115 pstA Stress Phosphate limitation Rhodobacterales bacterium HTCC2083 7.534788265 7.614986295 7.52770762 7.074344479 7.727425948 7.426386773 7.589065071 7.669807388 222354070 hao Nitrogen Nitrification uncultured bacterium superkingdom:Bacteria; 7.279968607 6.993903871 42406461 silC Metal Resistance Silver Yersinia enterocolitica superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia; 8.173756854 7.757743531 8.517111126 7.691044007 8.556716415 8.123989367 7.846251264 116625374 grpE Stress Heat shock Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 7.580557046 7.29213814 7.27297292 6.996562005 7.553148441 7.237216835 7.279083363 7.273590828 150008552 ara Carbon cycling Carbon degradation Hemicellulose Parabacteroides distasonis ATCC 8503 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides distasonis; 7.534564737 7.449193639 7.446597686 7.249420841 7.227190008 7.556725099 7.556956963 7.375008159 7.343643381 237846136 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 7.092160136 7.320094291 6.715805193 7.393297649 262046150 nplT Carbon cycling Carbon degradation Starch Lactobacillus crispatus MV-3A-US superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus crispatus; 8.034663036 7.244372721 6.901372191 7.350626818 7.173657972 7.393471003 7.259941802 7.396565419 7.069659491 27382714 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.738779668 7.760801804 7.751066772 8.072724544 8.289073863 7.844284265 7.814079021 7.505630418 154086248 cydA Stress Oxygen limitation Parabacteroides merdae ATCC 43184 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides merdae; 7.049394331 6.953937441 6.611278424 7.743848163 7.035091817 7.035918402 86740690 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Frankia sp. CcI3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 7.437738893 7.708802233 7.842005493 7.977598249 7.83260307 8.481009578 7.690942702 7.853454928 27380808 alkK Organic Remediation Others Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.268956688 7.283161077 7.369188241 7.812170891 7.258197709 7.278069716 7.506600957 37726837 dsrA Sulphur sulfite reductase uncultured prokaryote 7.096701924 7.745120395 7.349948039 7.163776303 7.399679363 7.265190079 19917110 pstC Stress Phosphate limitation Methanosarcina acetivorans C2A superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina acetivorans; 7.308954058 7.474698634 72393828 glnA Stress Nitrogen limitation Ehrlichia canis str. Jake 7.07895215 7.125431967 56751460 pilin virulence pilin Synechococcus elongatus PCC 6301 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus;species:Synechococcus elongatus; 7.148954673 7.112331693 167965707 TerC Metal Resistance Tellurium Xylella fastidiosa M12 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xylella;species:Xylella fastidiosa; 7.333653845 7.05785711 146404231 rubisco Carbon cycling Carbon fixation Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.542871601 7.576741522 7.389973913 7.620248687 7.401589131 8.282313752 7.441081483 7.290591174 7.394895595 46307842 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.041593358 7.256277437 7.581651416 7.467105601 7.29959027 7.663160936 7.591613099 7.267045479 150011877 pstA Stress Phosphate limitation Methanococcus vannielii SB 7.215327159 7.099911833 40557184 ara_fungi Carbon cycling Carbon degradation Hemicellulose Aureobasidium pullulans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Dothideales;family:Dothioraceae;genus:Aureobasidium; 7.181057387 7.356788329 7.097513344 6.932354136 7.432831583 7.016126875 7.20982755 123441449 MFS_antibiotic Antibiotic resistance transporter Yersinia enterocolitica subsp. enterocolitica 8081 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 7.986493227 8.374400439 8.165103566 7.786544633 8.360918876 8.154948538 8.436921554 8.114833169 8.307813783 22777653 grpE Stress Heat shock Oceanobacillus iheyensis HTE831 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Oceanobacillus;species:Oceanobacillus iheyensis; 7.287190761 7.455355282 7.291369045 167588518 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia ubonensis Bu superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ubonensis; 7.513481998 7.713059819 7.751913625 7.613057021 7.834642409 8.07097844 7.67623912 7.866873864 7.583223386 187981323 amyA Carbon cycling Carbon degradation Starch Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7.273532731 7.325868242 7.026057307 6.981607014 7.359028609 120326888 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 7.175525264 7.321951737 7.358227186 7.680306066 7.630013843 7.367878536 7.404450669 7.585017072 220936380 pilin virulence pilin Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 8.085742171 8.066839149 7.982290169 7.720035344 8.360170935 8.066751397 7.844935405 7.650584553 88798010 ureC Nitrogen Ammonification Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 7.315717147 7.705660927 7.762909768 7.821016604 7.390752438 7.863493454 7.578930211 7.372228961 7.660821272 113200655 T4_recomb_endonuclease Bacteria phage REPLICATION Synechococcus phage syn9 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.126850174 7.113140557 6.964123342 28974730 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.305889215 7.976249637 7.314789771 6.938229833 7.301143062 7.555830393 62288594 T4_recomb_endonuclease Bacteria phage REPLICATION Enterobacteria phage RB43 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.597354483 7.542547272 7.270131052 7.748536713 94471251 narG Nitrogen Denitrification uncultured bacterium 7.375395118 7.500689498 7.271827304 7.386087631 7.63571428 7.35988247 7.094824041 7.249589181 90324090 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Photobacterium profundum 3TCK superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 7.410316674 7.253157132 7.045619036 7.250989459 261372523 sigma_70 Stress Sigma factors Fibrobacter succinogenes subsp. succinogenes S85 superkingdom:Bacteria;phylum:Fibrobacteres;class:Fibrobacteres;order:Fibrobacterales;family:Fibrobacteraceae;genus:Fibrobacter;species:Fibrobacter succinogenes; 7.466110649 6.824413687 7.157522893 6.783430315 6.740131052 6.9084373 7.070032678 187602736 amyA Carbon cycling Carbon degradation Starch Chloroflexus sp. Y-400-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus; 7.376550317 7.318440058 7.469382903 7.131871375 6.828175464 7.695245516 7.412207005 7.415289478 7.430653613 15614923 glnA Stress Nitrogen limitation Bacillus halodurans C-125 7.351960668 7.25614919 7.198430399 7.081716273 7.444504521 7.148143302 7.195377256 7.62774869 118741278 phn Organic Remediation Herbicides related compound Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 7.487018317 7.373302591 7.104475433 7.352249342 7.763435544 7.498668733 7.430202676 7.230117756 7.340656751 206684605 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.475410796 7.584824273 7.966400364 7.622911281 7.626795675 7.750311463 7.825288432 8.071539025 7.959986927 89145072 ppk Phosphorus Phosphorus utilization Microbacterium esteraromaticum superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium; 7.964311191 8.338012996 7.925451623 8.223661598 8.55128393 8.227797753 8.639828175 8.436319903 8.510533956 206687185 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.907784029 7.888629194 7.6058764 7.618902739 8.143032295 7.681927353 7.602818609 8.08351863 68549269 CopA Metal Resistance Copper Pelodictyon phaeoclathratiforme BU-1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 7.220504329 7.412279071 7.480874893 7.106412862 7.9532024 251795080 cda Carbon cycling Carbon degradation Starch Paenibacillus sp. JDR-2 7.440783757 7.420534831 7.080343023 7.171893915 7.54971289 260612783 pilin virulence pilin Vibrio metschnikovii CIP 69.14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio metschnikovii; 6.953956035 7.248925961 7.330376681 6.915065845 7.039175493 7.94515709 7.232052816 7.323753721 7.547271831 56410347 cnrC Metal Resistance "Cobalt,Nickel" Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 7.534476754 7.464451898 7.015249346 7.099960453 7.069176573 7.655876163 7.06644245 7.082549377 63255746 tfdA Organic Remediation Aromatics Chlorinated aromatics Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 7.385563352 7.142398508 7.455404169 7.162816397 7.694740823 7.130506968 7.079452338 169759881 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Pseudomonas putida W619 7.812837646 7.956056566 7.760505004 7.681485647 7.994151547 7.920875304 7.955064405 7.918137976 7.808253787 57234871 fnr Stress Oxygen stress Dehalococcoides ethenogenes 195 7.162254885 7.788083425 7.461318006 7.430311765 7.903196305 7.511679645 7.346920501 121518080 CopA Metal Resistance Copper Candidatus Desulfococcus oleovorans Hxd3 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus;species:Desulfococcus oleovorans; 7.558804866 7.572147175 7.456154994 7.219808153 7.164631609 7.187052275 7.48678095 7.541059798 255020521 sigma_38 Stress Sigma factors Acidithiobacillus caldus ATCC 51756 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 7.794853213 8.00003365 7.748308189 7.52174539 7.778453872 7.877926443 7.894192063 8.21894911 124389565 rubisco Carbon cycling Carbon fixation Ectothiorhodosinus mongolicum superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Ectothiorhodosinus; 7.997278987 7.59340801 7.862122553 7.997918385 8.145897794 8.179645098 8.258892844 8.016290077 134267544 pstB Stress Phosphate limitation Geobacillus thermodenitrificans NG80-2 7.220314774 7.141849108 7.234673447 7.089744476 7.073957208 7.790817601 7.141733439 7.385793141 7.201403036 190688148 amyA Carbon cycling Carbon degradation Starch Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 7.493004454 7.712765833 7.603350151 7.522178071 7.60587546 7.574188804 261196816 amyA Carbon cycling Carbon degradation Starch Ajellomyces dermatitidis SLH14081 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 7.255761352 6.746545889 6.959774002 109452551 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.619601973 7.42535046 7.620176239 7.775070585 7.458209089 7.956692367 7.493960581 7.746429144 7.882450628 56550986 linC Organic Remediation Pesticides related compound Zymomonas mobilis subsp. mobilis ZM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Zymomonas;species:Zymomonas mobilis; 8.243891143 7.936031486 7.856672417 8.051674191 8.013061194 7.988543948 7.920104793 7.887069011 91695779 pimF Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 7.259405187 7.149160956 7.040088635 6.98681409 7.389196146 78170118 ureC Nitrogen Ammonification Synechococcus sp. CC9902 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.265469081 7.434836983 7.457161882 7.362221992 7.328693557 7.704670136 7.631900077 7.531511148 7.652051794 167887767 mer Metal Resistance Mercury Pseudomonas aeruginosa superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.681025833 7.852434812 7.459060354 7.807813681 7.895054382 8.091786401 7.934431115 7.852806475 7.571938407 77918501 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Pelobacter carbinolicus DSM 2380 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter carbinolicus; 7.418692674 7.588969136 7.40367757 218682538 nitA Organic Remediation Aromatics Other aromatics Rhizobium etli CIAT 894 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.856761285 8.903631077 8.88176156 171911815 ureC Nitrogen Ammonification Verrucomicrobium spinosum DSM 4136 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Verrucomicrobium;species:Verrucomicrobium spinosum; 8.244573261 7.945435744 8.097059487 7.513027646 7.7580549 7.854326126 7.774795216 7.454064063 14389283 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.045311438 7.17947995 7.409451699 227295602 nplT Carbon cycling Carbon degradation Starch Thermoactinomyces vulgaris 7.939176137 8.120610272 7.824630208 7.205474648 7.497930596 7.700646702 7.469587249 7.450951949 7.790209898 257060629 pstB Stress Phosphate limitation Cyanothece sp. PCC 8802 7.234764909 7.158847487 7.167341522 7.119307291 7.068493905 7.532858077 197790855 mer Metal Resistance Mercury Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 7.610065952 7.846999399 7.344174357 7.392658344 7.447553514 7.393976853 7.351142206 7.216129608 5851794 pheA Organic Remediation Aromatics Other aromatics Ralstonia sp. KN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 7.675677224 7.307232126 169832016 obgE Stress Radiation stress Candidatus Desulforudis audaxviator MP104C superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Candidatus Desulforudis;species:Candidatus Desulforudis audaxviator; 7.605975749 7.804187276 8.011231959 7.705319172 8.192451957 7.873662862 7.993902559 8.467914635 7.813981322 213876542 pilin virulence pilin Vibrio vulnificus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.254161421 7.1795847 213924917 pectinase Carbon cycling Carbon degradation Pectin Pseudomonas syringae pv. tomato T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 7.371126619 7.20023589 7.697914677 7.495631731 7.413249423 7.630084331 7.439223945 108770202 AceB Carbon cycling Carbon degradation others Mycobacterium sp. MCS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.061165742 7.734361179 8.161235898 8.1669234 7.798838969 7.551313793 7.560461735 7.517982342 188533207 ArsC Metal Resistance Arsenic Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 7.413208131 7.407294149 7.179777705 7.394702605 7.446772578 7.710920093 99030541 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 7.427037372 7.389060968 6.921419711 7.525633712 7.503711362 6.973551146 159026682 fnr Stress Oxygen stress Microcystis aeruginosa PCC 7806 7.617402152 7.257941313 7.296529232 114542572 vanA Carbon cycling Carbon degradation Others Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.234365946 7.791681944 7.450686106 7.076979499 7.712495447 91226729 endochitinase Carbon cycling Carbon degradation Chitin Vibrio alginolyticus 12G01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 7.471144949 7.892273376 7.625721012 7.619043311 7.973052312 7.738191771 8.109879433 7.892721442 256800313 ureC Nitrogen Ammonification Streptomyces viridochromogenes DSM 40736 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 8.175839202 7.861501646 7.510411299 7.94448893 7.768418998 8.216516216 7.955110398 8.057235587 7.721758025 213987327 benD Organic Remediation Aromatics Aromatic carboxylic acid Acinetobacter baumannii AB307-0294 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 7.553094468 7.544439667 7.596675876 6.931488491 7.32102721 7.065262516 7.725205932 7.566024699 256670000 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7.56586636 7.356130878 7.497153503 48527124 mcrA Carbon cycling Methane Methane production uncultured Methanosarcinales archaeon superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales; 7.208228505 7.250861319 7.156751099 7.070744882 6.912156551 47155102 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 7.486179148 7.331250521 7.194905644 7.5137711 7.329477145 7.345374622 260775865 amyA Carbon cycling Carbon degradation Starch Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 7.491851905 7.501860773 7.577565618 189210509 pcpE Organic Remediation Herbicides related compound Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7.233340579 6.941735011 46196568 ppx Phosphorus Phosphorus utilization Thermus thermophilus HB27 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 7.071397818 7.306245949 7.532594558 7.099386505 6.860470848 7.80571346 260591792 cda Carbon cycling Carbon degradation Starch Prevotella veroralis F0319 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella veroralis; 7.154443667 7.179643471 7.134817093 7.008510301 7.59539454 148978109 atzB Organic Remediation Herbicides related compound Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 7.184349262 7.35729977 7.324552474 6.823638706 7.38836039 7.282418754 7.172602867 7.269613455 148509824 katE Stress Oxygen stress Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.739525508 7.594268371 7.455225159 7.838832696 7.661265606 7.65468286 7.738250638 118715769 PobA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia multivorans ATCC 17616 7.888289618 7.686898036 7.733701302 7.419010645 7.94077859 8.106514977 7.584795444 7.586686598 7.747151764 148261032 cytochrome_bd Bioleaching Electron transport Acidiphilium cryptum JF-5 7.309458514 7.350925851 7.716187542 7.280579447 7.317996625 7.823953594 7.444827861 7.310089235 7.441719981 157317024 linB Organic Remediation Pesticides related compound Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 7.317613536 7.36106385 7.501408991 6.694793771 7.283761863 119373871 AceA Carbon cycling Carbon degradation others Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 7.508626306 7.524281564 7.528213125 7.863847661 8.255939156 8.114938021 7.763312505 7.909098521 219536585 narI Stress Oxygen limitation Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 7.686589201 7.394509058 7.318418955 6.946334653 7.513825218 7.876763265 7.574591119 7.417794704 7.618579885 187928869 metC Metal Resistance Mercury Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 7.702555504 7.590200117 7.717584908 7.45973869 7.620772761 7.250574033 7.555540418 120594269 ahpC Stress Oxygen stress Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 7.348476774 7.231908222 7.006905689 6.501888286 7.512381408 7.080173658 6.828830799 7.179079771 147886076 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured bacterium 7.700705168 7.382022123 7.360741273 7.2289999 7.443269704 7.691446889 7.440109502 7.370269108 7.275028081 93004072 gyrB other category gyrB Helicobacter trogontum superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter; 7.210838911 7.196464716 7.217703794 7.134027015 7.514972612 7.15350642 6.918372562 121715025 linB Organic Remediation Pesticides related compound Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7.947289573 7.988701758 7.785893581 7.348199721 7.735825657 7.34841711 7.724060886 7.330038937 7.895696298 226090968 ppx Phosphorus Phosphorus utilization Gemmatimonas aurantiaca T-27 superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 7.874868341 7.955354989 7.996491193 7.266787801 7.742393796 8.194480236 7.750639457 7.772492328 8.106397249 258510317 pilin virulence pilin Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 7.997460686 7.927007613 8.015685926 7.479851037 8.324371156 7.777696492 7.955369546 8.034223187 7.804111534 196240470 cellobiase Carbon cycling Carbon degradation Cellulose Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.162957757 7.210242986 7.148193776 6.690308973 7.156290983 7.677427786 7.155824054 6.777014489 7.580638182 15809259 rd Organic Remediation Chlorinated solvents Desulfitobacterium frappieri superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium; 7.697793027 7.460204183 7.584022791 7.663715853 7.680241006 8.011721089 7.979095682 8.085256951 7.58385072 188993476 mer Metal Resistance Mercury Xanthomonas campestris pv. campestris str. B100 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 7.788602137 7.390024134 7.095978041 7.345521891 7.25486458 7.551748234 7.340284773 7.322314057 6.96934274 152980264 sigma_24 Stress Sigma factors Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 7.159607244 7.53679375 7.476559712 7.024669655 7.670031022 7.505931153 7.434095563 7.719455997 7.57805054 6136053 xylC Organic Remediation Aromatics BTEX and related aromatics Sphingomonas chungbukensis 7.389978553 7.569101664 7.48464226 7.335557109 7.217008923 7.782474494 7.223835354 7.453037403 7.429768539 256391377 sigma_24 Stress Sigma factors Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 7.566245895 7.614948919 7.662728976 7.375404232 7.664823041 7.357939871 7.623176791 7.198664785 163794220 PhaB Organic Remediation Aromatics Aromatic carboxylic acid alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 7.891598471 8.00160489 7.81081729 7.240085446 7.883021333 7.662365728 7.709112859 7.88400408 7.807652783 18161012 mer Metal Resistance Mercury Pyrobaculum aerophilum str. IM2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum aerophilum; 7.500998072 7.188791269 7.107297761 7.024460789 7.080691993 118592596 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Stappia aggregata IAM 12614 7.882165646 7.772293276 7.763670945 8.214692845 7.884620371 8.270354553 7.802687468 8.056801932 8.27628971 261415262 gyrB other category gyrB Fibrobacter succinogenes subsp. succinogenes S85 superkingdom:Bacteria;phylum:Fibrobacteres;class:Fibrobacteres;order:Fibrobacterales;family:Fibrobacteraceae;genus:Fibrobacter;species:Fibrobacter succinogenes; 7.624827078 7.432353033 218224248 catB Organic Remediation Aromatics BTEX and related aromatics Parabacteroides johnsonii DSM 18315 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides johnsonii; 7.443845874 7.460027097 7.072829695 7.053573043 7.207773132 7.160119313 7.062078166 89092407 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Oceanospirillum sp. MED92 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Neptuniibacter; 7.466764853 7.49293231 7.456210768 7.538818869 160917613 narG Nitrogen Denitrification uncultured bacterium 7.523488948 7.459128953 7.496191312 7.242350684 7.494091664 226719220 fnr Stress Oxygen stress Azotobacter vinelandii DJ 7.5038289 7.194972958 7.167912628 6.950470695 7.40412661 7.665363738 7.248025107 7.506905722 7.500489118 209523312 hrcA Stress Heat shock Arthrospira maxima CS-328 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira maxima; 7.094573383 7.03800044 7.665450019 255659059 nrfA Nitrogen Dissimilatory N reduction Mitsuokella multacida DSM 20544 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Mitsuokella;species:Mitsuokella multacida; 7.218105896 7.511810173 7.379069833 7.209589959 6.960551927 7.272752507 7.226266515 54308413 CadA Metal Resistance Cadmium Photobacterium profundum SS9 6.87572072 7.118739091 7.063186053 126731866 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 7.701082553 7.804204672 7.75611108 7.791225325 7.96017967 8.012191956 8.208291224 7.854999882 56314712 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 7.3168944 7.305753713 150036122 sox Sulphur Sulphur oxidation Thiobacillus plumbophilus superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 8.108805092 8.211976614 7.848922331 7.980669941 8.496584297 8.372409671 8.334134001 8.52214353 8.374373568 55233010 pimF Organic Remediation Aromatics Aromatic carboxylic acid Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 7.39117317 7.127847542 7.091085732 7.26091811 7.197393878 7.337530158 126035163 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 8.049704474 7.732393261 7.320707511 7.6140067 7.813981072 7.94185201 7.417065763 7.262420487 7.406563527 157910689 alkK Organic Remediation Others Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 7.271727925 7.311015753 7.275046033 6.81242672 7.307676338 7.656269542 7.193850457 7.034143976 7.263517139 91797657 AceA Carbon cycling Carbon degradation others Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 7.207118077 7.165023393 7.430857082 6.970603415 7.611470107 7.427450204 7.225083458 85059831 ZntA Metal Resistance Zinc Sodalis glossinidius str. 'morsitans' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Sodalis;species:Sodalis glossinidius; 8.128801203 8.462668967 7.98422963 7.862642389 8.411229087 8.251323653 8.429227887 8.442791699 36785933 MATE_antibiotic Antibiotic resistance transporter Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 8.081789162 7.709568406 7.732473958 7.334417234 7.331686701 7.531560555 7.414553227 7.265657893 7.680238046 163841182 glnA Stress Nitrogen limitation Renibacterium salmoninarum ATCC 33209 7.266182759 6.910894588 7.338342953 7.367886872 6.774038306 7.602393985 39984704 hydrogenase Energy process Energy process Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 7.661126018 8.019871089 7.929750245 7.346867538 7.599079433 7.925586212 7.540064036 7.643256762 7.782099344 148499668 vanA Carbon cycling Carbon degradation Others Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 7.051447297 7.122756587 7.298475913 7.142152505 7.281321836 239579691 nrfA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.157341667 7.456187812 7.161771856 28542655 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.820794712 8.10239125 7.789016825 7.432604336 7.993279982 7.826473593 7.805084841 7.741583575 7.927410559 294365 4HBH Organic Remediation Aromatics BTEX and related aromatics 6.949582979 6.83016374 7.104845446 6.779701043 7.532546083 6.712085299 6.837736914 114054545 xylanase Carbon cycling Carbon degradation Hemicellulose Geobacillus stearothermophilus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.134282129 6.988875903 7.365041691 7.150579994 7.708920025 6.856673902 7.445936572 110554668 rubisco Carbon cycling Carbon fixation Thermofilum pendens Hrk 5 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermofilaceae;genus:Thermofilum;species:Thermofilum pendens; 7.409275389 7.355314359 7.325252537 148549667 iro virulence Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.94608356 7.690188191 7.550063378 7.437688598 7.99687025 7.682989638 7.938205167 7.924429492 7.865729845 70728715 nitro Organic Remediation Others Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.419815773 7.407336564 7.035045751 7.339716802 7.307908861 7.575410325 7.365148397 7.364046716 110817071 mhpC Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.101597677 7.642490175 7.831225356 7.743508504 8.130970019 7.582923045 7.733864296 7.657608437 3157552 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 7.213018359 7.047363985 7.074301255 23129429 tfdA Organic Remediation Aromatics Chlorinated aromatics Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 7.108642761 7.693268015 7.882204446 7.496178412 7.444558204 7.840485919 7.830283267 7.531618476 8.214504784 161579035 xylA Carbon cycling Carbon degradation Hemicellulose Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 7.649012672 7.769877655 7.903166305 8.163810811 8.161863406 8.014678904 148240837 sigma_70 Stress Sigma factors Synechococcus sp. WH 7803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.866772278 7.787048085 7.454217461 7.015825117 7.593779273 7.586230805 7.737100647 7.602757529 7.878792272 256358012 fnr Stress Oxygen stress Catenulispora acidiphila DSM 44928 7.781016535 7.570170725 7.328063654 6.884628594 7.228104052 7.304652149 7.119479768 27886596 alkK Organic Remediation Others Fusobacterium nucleatum subsp. vincentii ATCC 49256 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteria;order:Fusobacteriales;family:Fusobacteriaceae;genus:Fusobacterium;species:Fusobacterium nucleatum; 7.238002958 7.012821457 6.979752486 167352241 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Shewanella halifaxensis HAW-EB4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella halifaxensis; 7.011956395 7.089399377 7.519423328 6.869881052 6.74311269 7.557471595 6.93098915 7.23462144 7.106105132 62421706 nifH Nitrogen Nitrogen fixation Anabaena cylindrica superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena; 7.110879175 6.992919656 6.983691609 6.509559185 7.275182856 262373601 pilin virulence pilin Acinetobacter junii SH205 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter junii; 7.657192412 8.17145456 8.137635696 7.966827233 8.481215213 8.093689019 8.207636461 8.531830567 8.038742771 261856913 oxyR Stress Oxygen stress Halothiobacillus neapolitanus c2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Halothiobacillaceae;genus:Halothiobacillus;species:Halothiobacillus neapolitanus; 7.237238805 7.177973747 152986771 pilin virulence pilin Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 7.295286072 6.777590233 7.440049359 6.694330381 7.366770664 7.352624094 7.278538272 7.360016203 67159104 tfdA Organic Remediation Aromatics Chlorinated aromatics Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 7.527872741 7.382322721 7.472238679 7.955648968 8.015527024 7.789597995 7.790161086 7.647629499 119356452 SMR_antibiotics Antibiotic resistance transporter Chlorobium phaeobacteroides DSM 266 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 7.646878727 7.28223702 7.19642852 7.249146348 7.596060254 6.990933731 7.453591931 87290408 sigma_70 Stress Sigma factors Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 7.490418526 7.37321423 7.24474251 6.971228831 6.825095532 7.344189022 7.044051889 7.102933675 152982504 sox Sulphur Sulphur oxidation Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 7.194300713 7.260057418 7.490727089 7.46474386 7.296849361 7.704150674 7.264272043 7.400576993 7.23537855 257057702 pstC Stress Phosphate limitation Saccharomonospora viridis DSM 43017 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora viridis; 8.320186431 9.201636269 9.138833623 8.975551689 9.038511868 8.698200139 9.077200596 9.355306555 8.815187176 212171454 alkB Organic Remediation Other Hydrocarbons Marinobacter hydrocarbonoclasticus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 7.854350407 7.93819961 7.589470003 7.572183839 7.504540023 7.768315313 7.69027826 7.309836211 7.454166119 222153847 ahpC Stress Oxygen stress Streptococcus uberis 0140J superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus uberis; 7.165654084 7.021019044 6.980635054 6.927373982 7.406522911 256759264 sigma_32 Stress Sigma factors Thiomonas intermedia K12 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas;species:Thiomonas intermedia; 7.249414664 7.175337182 7.15045246 7.692017463 7.79108679 7.390394962 7.60977398 7.542476229 254461643 sigma_70 Stress Sigma factors Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.775413627 7.500320886 7.277627508 7.289361037 6.965102859 7.485299221 7.270831772 7.308637201 118405278 nosZ Nitrogen Denitrification Pseudomonas stutzeri superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.317391398 7.467380719 7.433418966 7.49610319 6.630805424 7.842256964 221532222 fnr Stress Oxygen stress Rhodobacteraceae bacterium KLH11 7.497840966 7.562240345 7.747377387 6.970535236 7.343695172 7.33807907 7.595339121 7.092960694 257797584 fnr Stress Oxygen stress Desulfohalobium retbaense DSM 5692 7.604831778 7.905398687 8.28484866 8.417482251 8.092949988 8.348084264 8.220994502 7.955173963 8.337129125 256847747 glnA Stress Nitrogen limitation Lactobacillus coleohominis 101-4-CHN 7.70604288 7.18354261 7.42319929 7.59839895 7.487326118 7.834701606 7.609620628 7.661371642 7.347221642 255302635 pilin virulence pilin Acinetobacter radioresistens SK82 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter radioresistens; 7.466308187 7.172801055 7.088413692 6.752408374 7.407127748 7.165252974 7.116793142 7.308037071 171779135 CadA Metal Resistance Cadmium Streptococcus infantarius subsp. infantarius ATCC BAA-102 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus infantarius; 7.330012503 7.307409417 7.186839908 6.802553468 6.88282927 7.603702434 7.265114114 6.807977923 261413089 MFS_antibiotic Antibiotic resistance transporter Aggregatibacter actinomycetemcomitans D11S-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Aggregatibacter;species:Aggregatibacter actinomycetemcomitans; 7.283428466 7.221100327 7.239937651 6.862141414 6.961294025 7.438116367 7.143156162 6.969490316 7.223583326 126105507 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.483152573 7.468507834 7.661457815 7.509229199 7.917331507 7.892041966 7.409206057 7.553284805 45272455 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.394214623 7.271870101 7.621840963 7.059034494 7.21021322 7.634243946 33602137 sigma_70 Stress Sigma factors Bordetella bronchiseptica RB50 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella bronchiseptica; 7.786893255 7.780461504 7.731979019 7.329202001 7.687262806 7.769268665 145701214 ABC_transporter_I Bioleaching other category Metallosphaera sedula DSM 5348 6.983644068 7.147093039 209518806 nmoA Organic Remediation Aromatics Nitoaromatics Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.525634933 7.455297368 7.06846355 7.254505317 148261988 Fe_S_cluster_binding_protein Bioleaching Electron transport Acidiphilium cryptum JF-5 7.545427353 7.233842617 7.197035383 7.435757057 7.195659117 7.352000019 163868737 sigma_70 Stress Sigma factors Bartonella tribocorum CIP 105476 7.936925875 7.569496287 7.550754713 121638950 SMR_antibiotics Antibiotic resistance transporter Mycobacterium bovis BCG str. Pasteur 1173P2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium bovis; 7.749179222 7.86498087 7.850275307 7.57935152 8.338529489 7.917728659 7.977678488 7.799304122 7.843589482 68264127 mer Metal Resistance Mercury Corynebacterium jeikeium K411 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 8.305038778 8.31888725 8.490780558 7.795025552 8.570022338 7.932431098 8.179337815 8.427243107 7.946250546 220903845 pstB Stress Phosphate limitation Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 8.011369582 8.385894245 7.819182788 7.931356547 7.785255482 7.871261281 7.981044619 8.190791268 7.882346809 154686985 ara Carbon cycling Carbon degradation Hemicellulose Bacillus amyloliquefaciens FZB42 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 7.493669034 7.195685013 7.129906078 6.729791791 7.037865872 149783597 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.107513784 7.413434807 7.134020624 7.387626541 15890500 cellobiase Carbon cycling Carbon degradation Cellulose Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.061858298 7.758549579 7.610101752 7.660653772 7.272134041 7.66004978 7.509752809 7.451139366 7.090138089 124516613 ferredoxin_oxidoreductase Bioleaching Electron transport Leptospirillum sp. Group II UBA 7.597028218 7.220954659 7.049783394 7.11559115 7.621300134 260653912 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 7.121978007 7.337357398 6.801652594 7.71691661 7.120309643 6.974280139 124519839 CadA Metal Resistance Cadmium Bacillus coagulans 36D1 7.459104662 7.286483366 7.333856598 6.93166047 7.331396245 7.652869674 7.338470276 7.121018169 7.278589348 2385506 sigma_70 Stress Sigma factors Synechococcus elongatus PCC 7942 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus;species:Synechococcus elongatus; 7.324490301 7.248535315 7.042959418 7.011045454 7.064763527 50554797 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Yarrowia lipolytica superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Dipodascaceae;genus:Yarrowia;species:Yarrowia lipolytica; 7.388818565 7.543341074 7.789245623 7.134217936 7.671054467 7.872588107 7.680362144 7.631352024 257219038 UvsW Bacteria phage REPLICATION Deftia phage phiW-14 order:Caudovirales;family:Myoviridae; 7.805382778 7.761141404 8.078792314 7.379025516 7.510143573 7.820537792 7.805643209 7.807314911 7.150410183 108771904 arsB Metal Resistance Arsenic Mycobacterium sp. MCS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.850590366 7.641872879 7.830582463 7.579499159 8.301735246 8.270602234 7.874076112 7.825251314 198268644 dmsA Organic Remediation Others Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 7.145419374 7.25784276 7.297310008 6.731882736 7.489817287 113936031 nmoA Organic Remediation Aromatics Nitoaromatics Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 7.890609208 7.492664988 7.65496601 7.396216457 7.624221545 7.537030274 7.588638331 7.52361486 7.836861813 269218096 cda Carbon cycling Carbon degradation Starch Actinomyces sp. oral taxon 848 str. F0332 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 848; 7.02133659 7.243115486 7.818397916 7.66532591 7.483695093 7.423744667 7.398883062 7.467642043 226716973 MFS_antibiotic Antibiotic resistance transporter Laribacter hongkongensis HLHK9 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Laribacter;species:Laribacter hongkongensis; 7.647681002 7.8479527 7.545955127 7.426188248 7.488559118 7.933704228 7.502410628 7.614691485 7.29139371 94968370 sigma_24 Stress Sigma factors Candidatus Koribacter versatilis Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 7.453608422 7.464857231 7.752059199 7.457380129 7.334655092 7.542883901 7.655300283 7.56677335 7.872040358 83317004 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.616717338 7.463010336 7.580012754 7.248798175 7.258791196 7.637438005 7.61993732 7.344938342 7.457781349 182634084 glnA Stress Nitrogen limitation Beijerinckia indica subsp. indica ATCC 9039 8.432255128 8.195713715 7.937980453 7.88965103 8.027083542 8.037879721 8.0477016 7.765065528 7.580857052 118049056 CadA Metal Resistance Cadmium Comamonas testosteroni KF-1 7.333832905 7.484871936 7.221030423 6.980172539 6.989256283 7.274960942 7.64163184 218760428 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 7.275865571 7.086417311 7.573805764 119952533 cbdA Organic Remediation Aromatics Chlorinated aromatics Arthrobacter aurescens TC1 7.117725847 7.970161472 7.143991693 7.534605269 7.411281706 6.89649686 7.285578826 116666141 gyrB other category gyrB Methanosaeta thermophila PT 7.606793446 7.54361791 7.550178794 8.316118692 7.458941641 7.368901875 7.337947351 7.759265525 8.48047691 269102925 endochitinase Carbon cycling Carbon degradation Chitin Photobacterium damselae subsp. damselae CIP 102761 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium damselae; 7.34585384 7.831207348 7.519275561 157679477 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.070401364 7.29925924 7.695644146 7.09542705 6.888364186 7.665440733 7.128112692 6.899046094 195941192 gyrB other category gyrB Escherichia coli O157:H7 str. EC4024 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 7.412705491 7.498812955 7.193998944 7.086864596 7.281752268 7.921017484 224818795 sigma_70 Stress Sigma factors Thioalkalivibrio sp. K90mix superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 7.46835677 7.625272623 7.621324207 7.202250883 7.530653331 7.339124507 7.479376678 7.5885236 70734226 atzB Organic Remediation Herbicides related compound Pseudomonas fluorescens Pf-5 7.801936855 7.814595924 7.448139097 7.356764036 7.730839661 7.983828659 7.546783809 7.52113857 7.560938965 254511481 phoB Stress Phosphate limitation Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 7.695843948 7.345866509 7.453055735 7.116067009 7.457184969 7.65436049 7.55574103 7.649365683 88703575 CopA Metal Resistance Copper gamma proteobacterium KT 71 7.965294846 7.728101631 7.474966536 7.486363389 8.203836274 8.022023537 8.256183038 8.039130998 7.983517707 195974747 pstB Stress Phosphate limitation Streptococcus equi subsp. zooepidemicus MGCS10565 7.531992926 7.038670509 7.071047396 6.819573466 6.781389105 7.6248506 115433464 tfdA Organic Remediation Aromatics Chlorinated aromatics Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.944215299 7.427022966 7.916123361 7.967694322 8.019353915 7.70355925 7.48941559 7.390349494 7.621878385 118424509 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.615763533 7.225792105 7.36296404 7.459839653 7.43757359 7.553738207 77919195 CopA Metal Resistance Copper Pelobacter carbinolicus DSM 2380 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter carbinolicus; 8.082686431 7.83382443 8.299959081 7.91653898 8.189034528 8.210530299 8.154696708 7.902709845 115279619 bphD Organic Remediation Aromatics Polycyclic aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.0507212 8.393322757 8.136940394 7.51534705 8.087186914 8.062040488 8.140562346 7.962315492 7.969842768 157277852 AceB Carbon cycling Carbon degradation others Thermoproteus tenax superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus; 7.356996914 7.291558886 7.451008405 7.211897847 7.245302508 7.504686289 148262444 cytochrome Energy process Energy process Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 7.64958356 7.437183323 7.48721776 7.380388735 7.448582874 7.542248426 7.568807025 7.652323514 7.392503687 38232633 ureC Nitrogen Ammonification Yersinia rohdei superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia; 7.623242165 7.626001514 7.500382199 7.242569624 7.919029259 7.376484007 7.845301836 7.694778563 7.405190802 77632632 mer Metal Resistance Mercury Alicyclobacillus vulcanalis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus; 7.634810855 7.227623242 7.169675444 7.189627486 7.341420002 126035167 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 8.107998543 7.999932289 7.892442864 7.915873531 8.300002386 8.425732417 8.253909815 8.186259574 8.336369653 115368536 SMR_antibiotics Antibiotic resistance transporter Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 7.847828774 7.6938983 7.647013612 7.503213135 7.873299364 7.88698648 7.807776802 7.75326928 7.634583251 106771255 phn Organic Remediation Herbicides related compound Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 7.936768172 7.660594901 7.830896719 7.1007053 7.642880678 7.496355069 7.567625254 7.700319223 50982408 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7.691177928 7.804016077 7.378686574 6.986778156 7.608724052 7.509671364 7.476316994 7.324656127 7.895271497 121709492 ara_fungi Carbon cycling Carbon degradation Hemicellulose Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7.590874639 7.522132777 7.469082527 7.423884865 7.701480283 7.293948077 7.446884767 7.504150742 90421601 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.319127713 7.166792659 7.154587517 7.038386122 7.338344082 7.726336407 7.148012127 7.12232081 7.118732476 196477505 norB Nitrogen Denitrification Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 7.887600439 7.470501336 7.729867628 7.579577578 8.169860336 7.720272109 7.635913622 7.747492189 225217300 rubisco Carbon cycling Carbon fixation Halothiobacillus neapolitanus c2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Halothiobacillaceae;genus:Halothiobacillus;species:Halothiobacillus neapolitanus; 7.110571389 6.545653107 227454992 pstA Stress Phosphate limitation Corynebacterium aurimucosum ATCC 700975 7.26016837 7.650663361 8.178290153 8.652403671 8.202524195 8.504295735 8.021118832 7.817495493 8.133034965 213498002 pstS Stress Phosphate limitation Serratia sp. ATCC 39006 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 7.23932594 7.256511441 6.79347301 7.497372698 7.188376082 7.138298795 117999846 nagL Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni KF-1 7.5426453 7.787565474 8.207453159 8.281382676 8.008442338 7.892749667 8.047736864 8.128192636 257777431 sigma_24 Stress Sigma factors Desulfotomaculum acetoxidans DSM 771 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum acetoxidans; 6.967403636 7.009847983 7.505985241 7.004977898 7.034630418 7.539614833 7.078357078 6.958488466 260887928 obgE Stress Radiation stress Selenomonas sputigena ATCC 35185 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sputigena; 7.578356048 7.127566932 257486544 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas amygdali; 7.571401469 7.599809073 8.144004152 86158518 cytochrome Energy process Energy process Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 8.272217335 8.741938319 8.380300103 7.867645037 8.664240205 7.991882727 8.326735304 8.190143375 8.378810909 95111185 catB Organic Remediation Aromatics BTEX and related aromatics Pseudomonas superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae; 7.876439609 7.647828345 7.317181713 7.716262107 7.383087705 7.808745122 7.522363942 7.931509509 212003182 grpE Stress Heat shock Schizosaccharomyces japonicus yFS275 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Schizosaccharomycetes;order:Schizosaccharomycetales;family:Schizosaccharomycetaceae;genus:Schizosaccharomyces;species:Schizosaccharomyces japonicus; 7.188397664 6.868871148 7.269614492 261376516 glnR Stress Nitrogen limitation Geobacillus sp. Y412MC61 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.110343932 7.881166677 7.990603483 7.243176805 7.231606002 7.750670266 7.76526851 8.069267233 71039007 ZntA Metal Resistance Zinc Psychrobacter arcticus 273-4 8.330028903 8.098443009 8.130141005 7.940005154 7.476868329 7.840475397 7.61429085 7.85764183 170077317 dnaK Stress Heat shock Synechococcus sp. PCC 7002 7.641740712 7.204111323 7.50153847 6.980449675 7.414927013 7.805480449 7.629569888 7.467998085 7.675878556 85712903 ZntA Metal Resistance Zinc Idiomarina baltica OS145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina baltica; 7.110027804 6.860547772 7.476430662 6.93306585 6.650928967 7.563753034 6.887741477 7.042978786 170141945 nitA Organic Remediation Aromatics Other aromatics Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 9.270263512 9.362021382 9.214574713 161504413 nplT Carbon cycling Carbon degradation Starch "Salmonella enterica subsp. arizonae serovar 62:z4,z23:--" 7.656429291 7.535730487 7.553140623 7.437286923 7.686456557 7.576234984 7.158962282 7.51658325 156081384 alkB Organic Remediation Other Hydrocarbons Geobacillus stearothermophilus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.171802093 8.136416722 7.957469678 7.777680956 8.082151126 8.029690314 8.336917313 8.105176585 8.053016358 1151310 AceA Carbon cycling Carbon degradation others Salmonella enterica superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella; 7.112066313 7.155187813 77459190 benD Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens Pf0-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.808890241 9.164179733 9.129293476 6179889 exoglucanase Carbon cycling Carbon degradation Cellulose Alternaria alternata superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Alternaria; 6.956907379 7.409215232 7.671213829 7.496228533 7.172185065 7.18054318 7.257044567 211957185 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 7.548254421 7.818633196 7.948809776 7.788878367 8.208261216 7.935644241 8.371067384 8.240724449 8.043962748 157679395 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.102301587 6.909633902 6.988777438 209552028 proV Stress Osmotic stress Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.559446716 7.86301374 8.089761363 8.176600655 8.222141788 7.997547219 7.379775729 7.834024108 67525849 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 8.861704827 7.502279916 9.507802948 8.123149494 8.472779296 8.008710211 213155619 ArsC Metal Resistance Arsenic Acinetobacter baumannii AB0057 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 7.334395167 7.141401586 7.174321563 262395147 pstB Stress Phosphate limitation Vibrio sp. Ex25 7.392222735 7.144669681 7.135354857 7.093075522 7.529072369 159040116 fnr Stress Oxygen stress Salinispora arenicola CNS-205 7.668982609 7.8721301 7.854871806 7.622880362 8.201329894 8.161228329 8.019215146 7.761234194 8.056448862 126738079 alkB Organic Remediation Other Hydrocarbons Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.018219625 7.072715845 7.10282689 6.998203079 7.446948386 192359766 Arylest Organic Remediation Aromatics Other aromatics Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 6.806821133 6.885493517 163942029 pstA Stress Phosphate limitation Bacillus weihenstephanensis KBAB4 7.244780384 7.396725102 27354695 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.301622525 7.331128167 7.373794668 7.152287153 7.544052269 7.268218041 7.204473939 145205262 nifH Nitrogen Nitrogen fixation Prosthecochloris vibrioformis DSM 265 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeovibrioides; 7.624134073 7.583318622 7.138643707 7.227389282 7.452776355 7.484733519 7.536938532 73762986 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.129584951 7.248954494 7.220158408 7.634351176 90196623 nhh Organic Remediation Aromatics Nitoaromatics Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 7.97463395 7.936065131 7.724322308 8.019671262 7.808908898 8.057647521 7.691329149 7.564087266 7.775754269 111018644 nmoA Organic Remediation Aromatics Nitoaromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7.607860087 7.345316896 88863885 AceB Carbon cycling Carbon degradation others Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 7.660658878 7.755194127 7.209301629 7.409962902 7.510457156 7.81291798 46307866 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.86826143 7.77157256 7.428303086 7.145915076 7.415500178 7.670514757 7.644810926 7.555141365 7.109624376 227109839 fnr Stress Oxygen stress Chryseobacterium gleum ATCC 35910 6.994183769 7.059153998 223692962 narI Stress Oxygen limitation Desulfobacterium autotrophicum HRM2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium;species:Desulfobacterium autotrophicum; 7.342629531 7.245547924 7.523728159 6.752914569 6.94936188 7.454196801 7.053128107 7.286569345 154685666 pstB Stress Phosphate limitation Bacillus amyloliquefaciens FZB42 7.545815216 7.31381226 7.390111008 124271119 FTHFS Carbon cycling Acetogenesis uncultured bacterium superkingdom:Bacteria; 7.469267674 7.140060377 7.208121086 7.187832262 6.910838359 7.292651681 7.470048328 167032310 SMR_antibiotics Antibiotic resistance transporter Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.447857313 7.531021455 8.046007953 7.603507072 7.403695975 7.438216145 21309656 B_lactamase Antibiotic resistance Beta-lactamases Shewanella algae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 7.22164095 7.440031907 254951486 gyrB other category gyrB Dyadobacter fermentans DSM 18053 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 7.564991311 7.198101899 6.945097935 6.995212199 6.652523606 7.652980635 88919495 nhh Organic Remediation Aromatics Nitoaromatics Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 7.654760171 8.62084592 8.50262198 8.103659912 8.307538962 8.168517006 8.370352318 7.937576144 153812541 cda Carbon cycling Carbon degradation Starch Ruminococcus obeum ATCC 29174 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus obeum; 7.071637578 7.146325679 6.998640295 6.911437447 7.43696439 112944411 ppx Phosphorus Phosphorus utilization Lactobacillus reuteri superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus; 8.553187408 8.337126908 8.669497688 7.809031853 8.394634079 8.114399889 8.488618941 7.878196618 29610878 nmoA Organic Remediation Aromatics Nitoaromatics Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 7.421781146 7.723100219 7.425491834 7.601025952 7.422364068 7.43360362 7.637015868 88866357 dsrA Sulphur sulfite reductase bacterium LS2003 superkingdom:Bacteria; 7.659821181 7.670674514 7.514951216 7.537942015 7.43939896 7.888593615 7.762959503 7.217831033 7.23371416 85712515 pilin virulence pilin Idiomarina baltica OS145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina baltica; 7.7970874 7.624938116 7.57207741 7.835312705 7.613416102 8.216525536 7.425506846 7.336205159 7.276393134 255321510 ppk Phosphorus Phosphorus utilization Campylobacter showae RM3277 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter showae; 7.807148268 8.174326935 7.599610211 7.804150286 7.698591554 7.884503411 27886024 CadA Metal Resistance Cadmium Fusobacterium nucleatum subsp. vincentii ATCC 49256 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteria;order:Fusobacteriales;family:Fusobacteriaceae;genus:Fusobacterium;species:Fusobacterium nucleatum; 7.205938554 7.218147979 225563059 ureC Nitrogen Ammonification Ajellomyces capsulatus G186AR superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 7.667841929 7.756681682 7.399656902 7.360104412 7.270052693 7.45313553 7.152223447 149357992 pimF Organic Remediation Aromatics Aromatic carboxylic acid Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 8.196480812 7.884974522 7.928468643 7.841472925 7.832411043 7.706489017 7.817322125 8.046608173 7.934841476 31747710 nifH Nitrogen Nitrogen fixation Leptospirillum ferrooxidans superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 7.402758554 7.085616819 7.031204258 6.599093083 7.444190799 6.769658134 6.903081902 74053806 todC Organic Remediation Aromatics BTEX and related aromatics uncultured bacterium 7.432944529 7.316045959 7.023229218 6.803315641 7.37511621 190686311 ppx Phosphorus Phosphorus utilization Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 7.280642108 7.046019388 7.254674515 219548761 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 6.942304173 7.072573593 6.883754607 114335679 iro virulence Shewanella frigidimarina NCIMB 400 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella frigidimarina; 7.68910811 7.280382347 7.06798666 6.906962024 7.671207268 189426916 contractile_tail_sheath_protein Bacteria phage STRUCTURAL Ralstonia phage RSL1 order:Caudovirales;family:Myoviridae; 8.00614664 7.881531126 8.114140315 8.117998988 7.771267234 8.288586497 7.941566785 8.036770052 8.153297381 121495622 narG Nitrogen Denitrification uncultured bacterium 7.083861296 7.115023038 6.796979949 7.650292914 56798867 catechol_B Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 7.633353447 7.727712712 7.606828227 7.863556034 7.707108974 7.714790451 7.642643332 7.294811583 157374095 obgE Stress Radiation stress Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 6.908119298 7.083671435 225519189 fnr Stress Oxygen stress 'Nostoc azollae' 0708 6.864048894 7.142066614 107015191 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.495401664 7.721534459 7.511151651 7.802027646 7.582163477 7.546651736 7.195894535 7.51991042 259503402 hly virulence hemolysin Lactobacillus antri DSM 16041 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus antri; 7.557682548 7.954910967 7.957194942 8.263666678 6.880667963 8.483118504 7.665312164 7.890971327 7.908030857 183982439 cydB Stress Oxygen limitation Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 7.265210826 7.613421486 7.703791828 7.403773426 7.831597839 7.927117184 7.477786842 7.775482246 7.377661271 226093295 sigma_24 Stress Sigma factors Brevibacillus brevis NBRC 100599 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus brevis; 7.392133147 7.322837216 7.152243721 84388052 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Vibrio splendidus 12B01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 7.867437169 7.542670175 7.676915135 6.911527453 7.550907815 7.507294415 7.331947194 7.670592915 7.369644838 167774670 ppx Phosphorus Phosphorus utilization Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira biflexa; 7.462523012 7.406453705 117926278 sox Sulphur Sulphur oxidation Magnetococcus sp. MC-1 superkingdom:Bacteria;phylum:Proteobacteria;genus:Magnetococcus; 7.325299654 7.160943012 7.226414577 6.938842806 7.13139196 7.299155732 6.717979638 6.949244673 160355247 AceB Carbon cycling Carbon degradation others Bacillus selenitireducens MLS10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus selenitireducens; 7.288447322 7.065075614 6.896648367 7.120791328 7.229832081 6.934046039 6.815522459 261311679 pstB Stress Phosphate limitation Mannheimia haemolytica serotype A2 str. BOVINE 7.154559191 6.564840731 6.770539165 7.307031291 156039581 phenol_oxidase Carbon cycling Carbon degradation Lignin Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 7.764848945 8.025699839 7.471675458 7.295367018 7.593799587 7.98469634 7.832681615 7.039181087 256755374 pstC Stress Phosphate limitation Clostridium papyrosolvens DSM 2782 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium papyrosolvens; 7.119959623 7.063364878 15384204 phdCI Organic Remediation Aromatics Polycyclic aromatics Burkholderia sp. DBT1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.087045801 7.178180841 7.209083171 7.001331887 7.317744399 94549691 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Acidobacteria bacterium Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 7.159438384 7.295061459 7.603310614 7.42950597 6.870528307 7.266671455 7.434839211 7.641329063 148833409 sigma_70 Stress Sigma factors Alcanivorax indicus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 7.876301122 7.222393564 7.370857569 7.584009322 116225356 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 7.445214518 7.561891441 7.4517798 7.495160086 7.424876308 7.628915409 7.495312414 7.604538179 6048988 xylG Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. RP007 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.409919883 7.062537821 7.191359817 7.044051889 6.906534157 67916589 CopA Metal Resistance Copper Clostridium thermocellum ATCC 27405 7.606426236 7.980735762 7.864539163 8.034601626 8.180270031 8.373348229 8.341115124 7.95096816 29347161 proV Stress Osmotic stress Bacteroides thetaiotaomicron VPI-5482 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides thetaiotaomicron; 7.425737673 7.220403442 33243201 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.196791504 7.288869268 7.360487731 6.84706741 7.416115007 7.008409398 7.127014187 169775435 pheA Organic Remediation Aromatics Other aromatics Aspergillus oryzae RIB40 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus oryzae; 7.623331826 7.540230495 114150712 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 6.939204075 6.921761901 7.017467262 6.801318669 6.871348663 7.402989092 7.215751189 7.094445614 116696092 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 7.919329663 8.027595773 8.106973978 7.920217246 8.168496028 8.012573332 8.304010361 8.143601738 7.897547281 28411087 ZntA Metal Resistance Zinc Tropheryma whipplei TW08/27 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;genus:Tropheryma;species:Tropheryma whipplei; 7.764270547 7.709643703 7.569100926 7.139145387 7.235002666 7.664834197 7.61965673 7.57554778 7.582864378 209525436 pstC Stress Phosphate limitation Arthrospira maxima CS-328 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira maxima; 7.57757944 7.140784644 156861661 ChrA Metal Resistance Chromium Bacteroides uniformis ATCC 8492 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides uniformis; 7.273330287 7.247923451 7.112529316 6.799609563 6.849764192 7.317573886 90577481 SMR_antibiotics Antibiotic resistance transporter Vibrio angustum S14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium angustum; 7.318587688 7.838021322 7.748246826 8.059417519 6.930660237 8.220260466 7.272471266 7.309851097 7.985884133 139478489 mer Metal Resistance Mercury uncultured soil bacterium superkingdom:Bacteria; 7.480352433 7.689794275 7.389574447 7.422001293 7.678973227 7.983244392 7.722031081 7.565125664 7.717210122 254453399 sigma_32 Stress Sigma factors Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 8.566403524 8.685527271 8.47424151 8.444613109 9.086595005 8.397075588 8.655092162 8.292420076 8.492027093 188029370 MFS_antibiotic Antibiotic resistance transporter Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 7.881150719 7.616823594 7.592475732 7.306423516 7.626229442 7.713081148 7.841492198 7.390891844 256579621 pstC Stress Phosphate limitation Desulfomicrobium baculatum DSM 4028 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfomicrobiaceae;genus:Desulfomicrobium;species:Desulfomicrobium baculatum; 7.720657361 7.747245967 7.803589847 7.57920386 7.75634352 7.379926479 7.419054101 7.532508276 83364980 ChnA Organic Remediation Other Hydrocarbons Rhodobacter sphaeroides ATCC 17029 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 7.159928068 7.226809786 7.388111518 6.707920952 7.291311403 7.411537741 7.068721264 165880057 exoglucanase Carbon cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.479478606 7.731395398 7.620430329 6.947072944 7.323787943 7.414295522 7.426244915 7.641741173 7.658160817 255321903 ahpC Stress Oxygen stress Campylobacter showae RM3277 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter showae; 7.82476403 8.029660089 7.885711609 7.882235326 8.249403328 8.183408437 8.116043683 7.828329123 118169201 dehH Organic Remediation Chlorinated solvents Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 7.976882303 7.358500698 7.667174314 7.39216501 7.244985362 7.355588689 261188937 katE Stress Oxygen stress Ajellomyces dermatitidis SLH14081 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 7.285321463 7.199870498 7.225734102 252120204 cap virulence capsule Prevotella melaninogenica ATCC 25845 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella melaninogenica; 7.269789337 7.110679713 6.937144591 7.477145738 162451218 pstS Stress Phosphate limitation Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 7.693695489 7.607058742 7.28175583 7.438260703 7.215036385 7.656823646 228271413 hly virulence hemolysin Staphylococcus hominis SK119 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus hominis; 7.116199772 7.026057307 52081493 amyX Carbon cycling Carbon degradation Starch Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 7.215045583 7.668436667 7.352027785 7.676319285 7.496467325 7.704026403 7.522472256 7.787847376 50876772 pstC Stress Phosphate limitation Desulfotalea psychrophila LSv54 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfotalea;species:Desulfotalea psychrophila; 7.765733359 7.959782525 7.740821326 8.149670207 7.686840897 7.930329986 8.004954256 7.99531278 213014478 amyA Carbon cycling Carbon degradation Starch Thermotogales bacterium TBF 19.5.1 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Kosmotoga;species:Kosmotoga olearia; 7.389173807 7.418466757 7.319939938 7.47953524 15157891 Arylest Organic Remediation Aromatics Other aromatics Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.487448176 7.556725716 7.463005119 7.070744882 7.413984027 7.639222035 7.200887194 7.240118932 7.498746706 124516029 LPS_heptosyltransferase_EPS Bioleaching EPS Leptospirillum sp. Group II UBA 7.589513021 7.322065948 7.431795858 6.962093191 6.836033473 7.75884463 66045492 phn Organic Remediation Herbicides related compound Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 7.979708577 7.802394085 7.503725783 7.967074601 7.81735586 7.812682775 7.843849835 8.088128486 7.710068087 170724270 katE Stress Oxygen stress Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.286913547 7.915082329 7.628188976 7.316126636 8.027770193 7.300678701 7.250550341 158138834 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.423267782 7.621708524 7.198455183 7.273168652 7.241582511 7.571480315 7.226065036 7.373430969 7.267179173 193498984 amoA Nitrogen Nitrification superkingdom:Archaea; 7.655035961 7.344851711 7.861611094 7.383283671 6.874147726 7.636872797 7.354843753 7.396988449 221533170 linB Organic Remediation Pesticides related compound Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 7.97445989 7.710840791 7.763869527 7.581756974 8.184392945 7.886393157 7.834126348 7.874308183 7.94497942 73541870 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.678463086 7.888037567 7.546704119 7.607878004 7.693665963 7.773747309 7.592437075 7.861396528 12667209 cmuA Organic Remediation Chlorinated solvents chloromethane-metabolizing bacterium 1 superkingdom:Bacteria; 7.291314598 7.227093025 7.241495367 7.378574438 6.681761314 7.79331766 118030045 cellobiase Carbon cycling Carbon degradation Cellulose Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.132104882 7.440936724 7.136515119 7.439204116 7.107198384 109452564 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.820222939 7.597397029 7.872961625 7.831335155 7.580287645 7.587787643 7.681615104 7.876173 70672905 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.789552145 7.699064215 7.814042431 7.587860099 7.50153763 23013916 pstB Stress Phosphate limitation Magnetospirillum magnetotacticum MS-1 7.626304065 7.74758488 7.798203151 7.732797062 163259055 ArsC Metal Resistance Arsenic Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 7.082995777 7.001527919 7.424783665 7.264375764 7.027140421 7.635575275 7.216853901 7.265226065 7.513795889 85069142 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.395403944 7.027779661 7.38227557 7.088064294 7.082252984 7.501905477 7.116197528 7.218774437 7.097905659 224602580 narI Stress Oxygen limitation Lutiella nitroferrum 2002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Lutiella;species:Lutiella nitroferrum; 6.902249038 7.189141578 7.327268606 7.241977775 219965684 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.969428644 7.595069194 7.720011088 7.309546407 7.550789045 7.583486957 7.528812234 217508049 sigma_24 Stress Sigma factors Thauera sp. MZ1T superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 7.520295517 7.38248307 7.368507456 7.483970643 7.460723087 7.788455611 7.753890946 7.805489393 7.584553406 89241998 rubisco Carbon cycling Carbon fixation Symploca atlantica PCC 8002 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Symploca;species:Symploca atlantica; 7.736924597 7.955193368 8.189347047 7.613565401 7.968239812 8.077774397 7.752069358 7.93974546 7.723369018 162954062 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Renibacterium salmoninarum ATCC 33209 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Renibacterium;species:Renibacterium salmoninarum; 7.396339193 7.379109962 7.562816011 7.364472107 7.544566535 220711298 vanA Carbon cycling Carbon degradation Others Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.27102504 6.888351566 6.873726549 6.623628599 7.357881568 256823312 pstA Stress Phosphate limitation Kangiella koreensis DSM 16069 7.04955457 7.107805627 66043509 cytochrome Energy process Energy process Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 7.430530703 7.540656314 7.650052741 7.179361102 7.844947913 7.888289772 7.549308571 7.70480196 7.5291944 145235213 cellobiase Carbon cycling Carbon degradation Cellulose Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.47491198 7.426854208 7.414985873 7.660894134 7.642985287 7.635474415 7.279183137 146864722 pulA Carbon cycling Carbon degradation Starch Shewanella baltica OS223 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 6.922081537 7.229622859 223040093 alkK Organic Remediation Others Campylobacter rectus RM3267 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter rectus; 7.071785078 7.080652664 7.199588361 6.8061287 7.351016105 7.100409908 7.152140038 154492683 ara Carbon cycling Carbon degradation Hemicellulose Parabacteroides merdae ATCC 43184 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides merdae; 7.568646603 7.592541121 7.403037345 7.385727999 7.774541537 7.472531143 7.723046809 7.559893473 227241517 SMR_antibiotics Antibiotic resistance transporter Sphingobacterium spiritivorum ATCC 33300 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium;species:Sphingobacterium spiritivorum; 7.329567942 7.563373414 134100912 bphA Organic Remediation Aromatics Polycyclic aromatics Saccharopolyspora erythraea NRRL 2338 7.307383778 7.533419198 7.379200538 7.893132729 7.191154019 7.683088534 7.13555601 7.693352537 77957751 ureC Nitrogen Ammonification Yersinia bercovieri ATCC 43970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 7.760620294 7.680984866 7.384486298 7.238646431 7.316303628 7.802385886 7.213419326 7.253381498 7.219452482 260587254 phoB Stress Phosphate limitation Blautia hansenii DSM 20583 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Blautia;species:Blautia hansenii; 7.514785106 6.964615814 114314960 exaA Organic Remediation Chlorinated solvents Granulibacter bethesdensis CGDNIH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 7.804730629 8.038537533 7.794197519 7.462879515 7.614093122 7.821690174 7.83603528 7.76025746 7.962746785 113528871 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.135988963 7.983558577 7.786494922 8.074304776 7.745723711 8.002129022 7.758125021 7.536175245 8.127345198 238060367 glnA Stress Nitrogen limitation Micromonospora sp. ATCC 39149 7.640923496 7.251083252 7.053562207 6.868247957 7.483938474 115377823 type_III_secretion virulence secretion Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 7.880083195 8.111210341 8.014906131 7.417840107 8.32506948 7.941028461 7.815998103 7.982323799 32446447 ppk Phosphorus Phosphorus utilization Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 8.496546776 8.259003301 8.232782546 8.322833918 8.18964372 8.109525663 8.102141363 7.90804638 2612897 pstB Stress Phosphate limitation Bacillus subtilis 7.330635863 7.04995289 7.580531827 6.934231665 7.572496536 32364160 gyrB other category gyrB Pasteurella trehalosi superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Bibersteinia; 6.908265328 6.896442409 7.405607378 7.033569615 6.976983184 7.157595765 78365391 FTHFS Carbon cycling Acetogenesis Shewanella sp. PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 7.564430283 7.448191546 7.941975749 7.383104023 7.568125006 7.681996 7.913671995 7.625951392 256784003 narJ Stress Oxygen limitation Streptomyces lividans TK24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces lividans; 7.561666609 7.710378194 7.614966321 7.799041075 7.451177363 7.913156956 7.744987 7.967723181 7.574376482 218883378 pstB Stress Phosphate limitation Desulfurococcus kamchatkensis 1221n 8.12867671 7.950798176 7.850884877 7.81274215 67902218 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.270724654 7.24053547 7.267775 6.740613441 7.29433058 151302344 APS_AprB Sulphur adenylylsulfate reductase Desulfosporosinus meridiei superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus; 7.240228939 7.07905628 7.44929741 212539271 endoglucanase Carbon cycling Carbon degradation Cellulose Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.606354029 7.650245658 7.439351462 7.120967766 7.37025823 7.48834709 7.680390716 7.339071696 7.639011478 88778252 sigma_70 Stress Sigma factors Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 8.485085409 8.55195039 8.569875088 8.476911345 9.047316877 8.573852225 8.985623896 9.097886786 8.824415481 109897222 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 7.340152115 7.315409298 7.040447161 6.941133843 7.453576749 7.220048114 7.283985441 109625897 nirA Nitrogen Assimilatory N reduction Haloquadratum walsbyi DSM 16790 8.153874443 7.824674002 7.680766283 7.738014741 7.50490558 7.284113333 7.933260464 75702578 dehH Organic Remediation Chlorinated solvents Anabaena variabilis ATCC 29413 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena variabilis; 7.076264216 7.0792871 7.351885591 146410637 czcC Metal Resistance "Cadmium,Cobalt,Zinc" Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.781584959 7.619240939 7.643333904 7.491036033 7.822524483 7.805810614 7.801108777 7.493449656 7.856893804 217501779 ppx Phosphorus Phosphorus utilization Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 8.458075663 6.956698989 6.679531965 6.887689472 169793656 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.433908287 7.286951494 7.263833366 7.503203188 7.753784819 7.950828948 7.211404769 7.608849737 60476022 rubisco Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.486685136 7.687007081 7.6630049 7.174614524 7.898559258 7.628991538 7.58239444 7.648924422 94314409 PobA Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 7.242815798 7.124080746 254460658 vdh Carbon cycling Carbon degradation Others Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.394207949 7.41114188 7.107820336 7.306231192 7.709537737 7.702294616 7.170638168 3378433 pchCF Organic Remediation Aromatics BTEX and related aromatics Novosphingobium aromaticivorans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 7.577746194 7.136919444 7.585426764 7.500825465 7.695286042 7.740434237 7.459022611 7.484752265 7.34261847 222138074 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.562627342 7.357359206 7.528387782 7.39433074 7.688257698 8.088218787 7.752284445 7.654806416 56379704 glnA Stress Nitrogen limitation Geobacillus kaustophilus HTA426 7.137419312 7.087510295 7.043198247 6.635851799 7.514992443 7.027119299 7.31782016 109456921 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 7.628578646 7.461956973 7.49271064 7.163362092 7.640522167 7.784099991 7.408393925 7.831936425 214044735 grpE Stress Heat shock Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.3740781 7.624257185 8.072585482 8.090895277 7.822715153 7.892579204 7.577248075 7.554168326 7.502358691 83773426 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus oryzae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 8.320055247 8.299310776 7.989148112 7.87883852 7.705291748 7.897958447 7.772197537 7.428322035 7.639816899 190893257 PobA Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium etli CIAT 652 7.056037044 7.045503155 256793132 pstA Stress Phosphate limitation Slackia heliotrinireducens DSM 20476 7.500586225 7.560537905 7.480893351 7.259865247 7.41655 62432965 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.536670803 7.811553604 8.044640748 7.658567424 7.99524263 8.00409477 7.729780166 7.979450334 7.913247426 238033816 glucoamylase Carbon cycling Carbon degradation Starch Pichia pastoris GS115 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Pichia;species:Pichia pastoris; 7.373010756 7.156964434 6.975292052 7.198800689 7.753095442 7.170745193 6.884582945 151302301 APS_AprB Sulphur adenylylsulfate reductase Desulfofustis glycolicus superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfofustis; 8.044072687 8.024196449 7.789000638 7.973870501 8.129307591 8.097695587 7.972380678 162952417 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Renibacterium salmoninarum ATCC 33209 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Renibacterium;species:Renibacterium salmoninarum; 7.477217062 7.4916959 7.60605777 7.682214417 7.740958801 7.559110047 7.795367513 7.798738263 7.403465302 67538928 AceA Carbon cycling Carbon degradation others Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.202039984 7.550122529 7.834683569 7.992054313 7.314744698 7.963594419 7.462292045 7.985645247 8.00513941 88704846 sox Sulphur Sulphur oxidation gamma proteobacterium KT 71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 7.095110083 7.052007009 7.277430699 73540739 hrcA Stress Heat shock Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.520227962 7.372822864 7.933216065 7.404751812 7.850290635 7.878604358 8.132437989 7.860959278 7.975070616 127514284 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 7.465144272 7.145451388 7.562460686 7.262345997 7.590551057 7.521327438 7.411144944 254451458 vanA Carbon cycling Carbon degradation Others Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 7.158880899 7.301852084 7.1943711 7.095838688 7.494575436 7.375184221 7.505890691 7.161431623 66046582 katE Stress Oxygen stress Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 7.053724535 7.26309925 7.206263146 6.999777574 7.433497849 7.800488771 218681287 fnr Stress Oxygen stress Rhizobium etli CIAT 894 8.036969613 7.921726402 7.670451812 7.565834645 7.54628733 7.814255917 7.540627316 7.450867923 7.726411306 261893276 pstA Stress Phosphate limitation Vibrio mimicus MB-451 7.631022561 7.574029045 7.413097385 7.449183984 7.846193795 7.548863139 7.559812726 7.36736182 229474898 sigma_24 Stress Sigma factors Planctomyces limnophilus DSM 3776 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces limnophilus; 8.352243758 8.637819384 8.426564375 8.230464506 8.844040592 8.233328058 8.611095973 8.674063534 8.865516042 62896436 metC Metal Resistance Mercury Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 6.884365924 7.28655445 7.827551681 7.641314663 7.594871569 8.160735069 7.253571326 7.56329043 7.726902042 88854987 AceB Carbon cycling Carbon degradation others marine actinobacterium PHSC20C1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 7.967195776 7.776469571 7.825723136 7.558644455 7.720298513 8.086387678 7.951254841 7.638079267 179349336 gyrB other category gyrB Natranaerobius thermophilus JW/NM-WN-LF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Natranaerobiales;family:Natranaerobiaceae;genus:Natranaerobius;species:Natranaerobius thermophilus; 7.344619768 7.485224399 7.120712383 7.427839949 7.302608877 7.477867723 7.355935089 111618406 ChrA Metal Resistance Chromium Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 7.610640731 7.33213758 7.195880315 6.979263758 7.557916946 10505267 bphA Organic Remediation Aromatics Polycyclic aromatics Pseudoalteromonas sp. EH-2-1 8.603714756 8.758208107 8.534663892 7.781186095 8.653264962 7.963390853 8.452061102 8.624676834 8.903461277 145015854 groEL Stress Heat shock Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 8.04016006 7.918973779 7.962228847 7.809468125 8.125425918 8.428866891 7.913354365 8.141173867 7.993103674 118027298 tfdA Organic Remediation Aromatics Chlorinated aromatics Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.870600051 7.597105454 7.905050425 7.576135199 8.00713987 7.928721608 8.068757091 7.960705713 7.797879613 156740976 pcc Carbon cycling Carbon fixation Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 7.255369964 7.302813832 7.419577766 7.481688319 7.62972459 7.273802358 7.25811893 7.595013967 145556122 fnr Stress Oxygen stress Rhodobacter sphaeroides ATCC 17025 7.969108586 7.948688915 7.76956796 7.528603144 8.044967075 8.221470277 8.35510252 7.635553644 7.788073688 145299157 MATE_antibiotic Antibiotic resistance transporter Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 8.001041563 8.187871912 7.945608104 8.032891136 8.45079701 8.481739171 8.257713197 8.42162501 8.155597058 261197656 Tet Antibiotic resistance other Ajellomyces dermatitidis SLH14081 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 7.359546656 7.173953136 7.249440656 124266855 merT Metal Resistance Mercury Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 7.900112726 8.287901574 8.101071407 7.972685022 8.296129149 8.166409794 8.614892325 8.244192548 118667080 CadA Metal Resistance Cadmium Delftia acidovorans SPH-1 7.487044373 7.35199424 8.040810251 8.048239046 7.839125208 7.877299732 8.084993595 8.029157045 8.148234151 116743193 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.168910496 7.026684308 7.030014258 6.722673182 7.177849471 7.186633402 148838535 pstB Stress Phosphate limitation Vibrio shilonii AK1 7.230652425 7.000459709 7.458795997 7.247030803 7.005908725 7.407008657 7.375340922 7.208995553 7.717950675 257791399 hrcA Stress Heat shock Eggerthella lenta DSM 2243 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Eggerthella;species:Eggerthella lenta; 7.816874499 7.550259354 7.446367907 7.56999276 7.632647371 7.931468585 7.712198203 7.86404282 7.464125917 78166994 CopA Metal Resistance Copper Pelodictyon luteolum DSM 273 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon luteolum; 7.572601267 7.548921249 7.188435554 6.930632736 7.613020506 120561979 fnr Stress Oxygen stress Desulfovibrio vulgaris subsp. vulgaris DP4 8.319922181 8.258187166 8.328375977 7.974243602 8.269723462 8.089021123 8.418839664 8.451788385 7.971740116 259419050 nirK Nitrogen Denitrification Silicibacter sp. TrichCH4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.197620835 7.044992092 7.29837081 6.77531883 7.548037765 7.118390764 6.814154953 66766652 vanA Carbon cycling Carbon degradation Others Xanthomonas campestris pv. campestris str. 8004 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 7.726811009 7.809512698 7.31983827 7.855135787 7.430369767 7.779857798 7.945603419 8.036680326 209551557 AceB Carbon cycling Carbon degradation others Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.812214626 7.68245639 7.411228995 7.27469025 7.624237302 7.506996184 7.4342433 7.427707006 7.60990258 188992264 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Xanthomonas campestris pv. campestris str. B100 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 7.315305342 7.176331237 7.129986711 163738749 AceB Carbon cycling Carbon degradation others Phaeobacter gallaeciensis BS107 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 7.861261858 7.713911623 7.691302523 7.293287157 7.86589275 7.585864365 7.682298078 8.086404501 7.496355579 255279115 narH Stress Oxygen limitation Geobacillus sp. Y4.1MC1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.138510459 7.9755482 7.845480333 7.812103676 8.241930293 7.987379575 8.264071348 8.260568273 7.996157323 227375310 phoA Stress Phosphate limitation Thermobaculum terrenum ATCC BAA-798 superkingdom:Bacteria;genus:Thermobaculum;species:Thermobaculum terrenum; 7.112494787 7.099530918 6.999077199 6.728876957 7.46850114 7.300445389 7.061190985 7.523502619 78777421 ZntA Metal Resistance Zinc Thiomicrospira denitrificans ATCC 33889 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Sulfurimonas;species:Sulfurimonas denitrificans; 7.970203672 8.064965994 7.841394836 7.597379943 7.616244636 7.841543723 7.826868072 8.235442396 91203550 hzo Nitrogen Anammox Candidatus Kuenenia stuttgartiensis 7.987491255 7.631612265 7.516533882 7.753709907 8.169700464 7.993432582 8.244223286 7.821938576 8.094983633 126740045 narH Stress Oxygen limitation Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.43485787 7.220577669 7.208298243 6.950635073 7.039953374 7.553267226 7.05107585 7.352205745 153005294 fnr Stress Oxygen stress Anaeromyxobacter sp. Fw109-5 8.413961189 8.396357677 8.438643412 7.672741066 8.25984776 7.56710776 8.150933634 7.636646661 39998510 fnr Stress Oxygen stress Geobacter sulfurreducens PCA 6.785177508 7.450572754 7.305268856 7.09459331 7.409440177 226187326 clpC Stress Protein stress Rhodococcus erythropolis PR4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 8.102780165 8.032020491 7.627676465 7.488093528 8.07953746 8.247291616 8.106433018 7.751055074 7.783475584 192360067 pstS Stress Phosphate limitation Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 7.27541555 7.243845978 55232611 grpE Stress Heat shock Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 7.829807438 7.46360289 7.237715743 7.338966039 7.541803804 134100477 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 7.991722937 8.122875588 8.173549878 8.517526421 8.630053102 8.541277169 8.513709181 8.212570412 110600324 nrfA Nitrogen Dissimilatory N reduction Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 7.437483161 6.989493473 147886242 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 7.814666256 7.41474947 7.775760535 7.910967941 7.345546046 7.916681731 86572327 ChrA Metal Resistance Chromium Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.387528171 7.148148976 7.733147438 7.715646337 7.280466487 7.81192049 7.314377048 262298278 katE Stress Oxygen stress Acinetobacter radioresistens SH164 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter radioresistens; 7.165818894 7.737811461 7.669107218 7.827949145 8.022525911 7.276885828 7.746937414 198262426 mer Metal Resistance Mercury gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.038484755 6.826732334 6.716156973 7.412937298 209546388 CopA Metal Resistance Copper Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.942570402 7.905228406 7.862831478 7.485157586 8.125366229 7.909738932 7.627808512 7.758244086 8.031497347 93103296 linC Organic Remediation Pesticides related compound Sphingomonas sp. BHC-A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 7.327741514 7.191439839 7.49166529 7.298371786 6.968525302 7.765070742 7.501897763 7.33130728 7.892403107 83404796 nirS Nitrogen Denitrification uncultured organism 7.127001659 7.166956729 7.291113308 145589716 ahpF Stress Oxygen stress Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 7.096810367 7.072820267 254481875 AceA Carbon cycling Carbon degradation others marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.868813814 7.76327177 7.603671861 8.056602534 7.716009301 7.573471252 7.461262437 7.616173896 112441533 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 7.716218203 7.164956116 7.079892683 7.278552001 186468408 tfdA Organic Remediation Aromatics Chlorinated aromatics Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 7.475275708 7.351977476 7.330493905 6.857364554 7.210356107 90020023 gyrB other category gyrB Saccharophagus degradans 2-40 7.484226287 7.623319102 7.377507993 8.123389698 7.80187405 7.556136729 218667019 MFS_antibiotic Antibiotic resistance transporter Acidithiobacillus ferrooxidans ATCC 23270 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 7.522458239 7.440156604 7.541899601 7.087058841 6.995096168 7.0324798 21325175 cbdA Organic Remediation Aromatics Chlorinated aromatics Corynebacterium glutamicum ATCC 13032 7.120047424 6.971170162 6.83081926 262198328 amyA Carbon cycling Carbon degradation Starch Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Haliangiaceae;genus:Haliangium;species:Haliangium ochraceum; 7.925867674 7.959968414 7.866819393 7.896202357 212685043 katE Stress Oxygen stress Providencia alcalifaciens DSM 30120 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 7.130515416 7.046658798 126629065 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 7.906172384 8.032052835 7.88452484 7.633548238 8.314940154 7.976119619 8.021815147 8.161688781 7.778607468 809566 CODH Carbon cycling Carbon fixation Oligotropha carboxidovorans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 7.433362345 7.247992183 7.317687347 6.832051188 6.991966995 7.464734459 7.024804916 7.180945926 115397181 tftH Organic Remediation Aromatics Chlorinated aromatics Aspergillus terreus NIH2624 8.026607558 7.472662211 7.377507993 7.408096884 7.195729088 7.611974197 7.695649322 83594653 CopA Metal Resistance Copper Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 7.482845042 6.990678906 7.213085091 78485770 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Thiomicrospira crunogena XCL-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Thiomicrospira;species:Thiomicrospira crunogena; 6.825358394 7.453203077 83766270 tfdA Organic Remediation Aromatics Chlorinated aromatics Aspergillus oryzae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 7.590272579 7.486981057 7.445478294 20807053 mhpC Organic Remediation Aromatics Aromatic carboxylic acid Thermoanaerobacter tengcongensis MB4 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Thermoanaerobacter;species:Thermoanaerobacter tengcongensis; 7.303893002 7.516034364 151302224 APS_AprA Sulphur adenylylsulfate reductase Desulfobacterium sp. PM4 7.038156559 7.15535159 7.066044825 7.155667353 7.604681257 7.601498546 7.221719898 7.250902304 110631072 nifH Nitrogen Nitrogen fixation uncultured soil bacterium superkingdom:Bacteria; 7.210341452 7.156167981 7.389742811 7.090579759 6.95826867 7.413040361 242772374 MFS_antibiotic Antibiotic resistance transporter Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 7.861992059 7.605411116 7.714710447 7.709812971 7.833242949 7.838617102 91780445 nmoA Organic Remediation Aromatics Nitoaromatics Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.150977945 8.125016269 8.023059125 7.730400443 8.310096801 8.183003212 8.045523351 8.236490566 7.772891539 151302119 APS_AprB Sulphur adenylylsulfate reductase Thermodesulfobacterium commune superkingdom:Bacteria;phylum:Thermodesulfobacteria;class:Thermodesulfobacteria;order:Thermodesulfobacteriales;family:Thermodesulfobacteriaceae;genus:Thermodesulfobacterium;species:Thermodesulfobacterium commune; 6.874814385 7.272427763 6.820915132 70930940 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.342420042 7.321074418 7.453141581 7.616471027 7.648701859 209501936 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.879599388 7.816966613 7.668403884 7.47094117 7.793383112 7.914136805 7.90855276 7.496227051 7.95971786 290643 CopA Metal Resistance Copper Enterococcus hirae superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus; 7.190245831 7.349089973 7.637729511 7.75353161 7.128788709 8.077365589 7.252637833 6.91614627 7.485889322 169239360 xlnD Organic Remediation Aromatics Other aromatics Mycobacterium abscessus 8.134017527 7.795592973 8.282130509 8.169332786 8.24839373 212669680 ara Carbon cycling Carbon degradation Hemicellulose Bacteroides finegoldii DSM 17565 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides finegoldii; 7.071812513 7.01688987 148260798 glycosyl_transferase_EPS Bioleaching EPS Acidiphilium cryptum JF-5 7.434492373 7.54678976 7.689380547 7.084339771 7.383022516 7.711198336 7.735034629 7.626766643 7.410449119 83718912 nosZ Nitrogen Denitrification Burkholderia thailandensis E264 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 8.214539386 8.80810681 8.330086599 8.405961869 8.841108349 8.202559363 8.574704615 8.557061975 8.553482561 257460085 cydB Stress Oxygen limitation Campylobacter gracilis RM3268 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter gracilis; 7.750696641 7.333491812 78512931 CODH Carbon cycling Carbon fixation Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.492174676 7.517684668 7.372434621 7.166495706 7.661769544 7.048025792 7.437056814 7.394745978 82534414 chnB Organic Remediation Other Hydrocarbons Burkholderia pseudomallei 1106b superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 7.168858145 7.100770498 7.278650157 6.978145324 7.236091058 227295582 cda Carbon cycling Carbon degradation Starch Klebsiella oxytoca 7.510054002 7.497248216 7.586266402 7.199117087 7.105672675 7.414988855 212636205 pimF Organic Remediation Aromatics Aromatic carboxylic acid Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 7.359365567 7.362978191 7.337951842 6.631754321 6.930084405 7.329066495 6.911238912 7.006234136 7.226552292 197296837 B_lactamase_C Antibiotic resistance Beta-lactamases uncultured bacterium BLR18 superkingdom:Bacteria; 8.135491514 8.289735371 8.245445737 8.138024213 8.511168931 8.228505808 8.488789444 8.387819693 8.403150424 7321319 narH Stress Oxygen limitation Shewanella sp. SK-3-30-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 7.22164457 7.094844676 6.799519059 7.32815885 27262380 pstC Stress Phosphate limitation Heliobacillus mobilis superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Heliobacteriaceae;genus:Heliobacillus; 7.113355044 7.261305282 6.944318313 7.467662923 7.227430025 7.610489635 217505260 pcc Carbon cycling Carbon fixation Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 7.607845634 7.220353953 7.748322884 7.389483716 7.198643172 7.754230507 148261930 antioxidant Bioleaching Metal Resistance Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 8.017060063 7.96088047 7.730826162 7.369640988 7.80440346 7.69390441 7.961751752 7.683809134 7.87624012 17385540 narG Nitrogen Denitrification uncultured bacterium 7.715945785 7.660187562 7.641059841 37726804 dsrA Sulphur sulfite reductase uncultured prokaryote 7.469851401 8.196633595 8.137017713 7.987852871 8.107077829 8.098662932 8.233722989 8.079172344 214042020 fnr Stress Oxygen stress Roseobacter sp. GAI101 7.510116504 7.272279614 6.755975503 7.164279369 197282354 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.456071427 7.341056692 7.29156723 7.128271134 7.360309831 7.229625949 7.347810655 85687808 mer Metal Resistance Mercury Erythrobacter sp. NAP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 7.495946627 7.426702295 7.214901607 7.055950847 7.245250658 7.707429188 7.384554366 7.251576477 7.096266655 83701120 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 6.944546997 7.391321898 7.425640038 7.45313357 7.233500917 7.601089955 219863946 pbrA Metal Resistance Lead Cyanothece sp. PCC 7425 7.661797028 7.435402464 162281747 ureC Nitrogen Ammonification Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 8.309188727 7.979266107 7.588011025 7.736790512 7.369180577 7.449011151 7.401551912 188485319 alkJ Organic Remediation Other Hydrocarbons Thermus sp. ATN1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus; 7.363514719 7.52602383 7.424976313 7.373154227 7.324051348 7.783864431 7.319841777 7.188271017 7.4167969 125973143 endoglucanase Carbon cycling Carbon degradation Cellulose Clostridium thermocellum ATCC 27405 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 7.053120422 7.105848893 7.026451959 77686825 CopA Metal Resistance Copper Alkaliphilus metalliredigenes QYMF 7.68002439 7.421022896 7.387273032 7.254374138 7.771746 7.220137104 6.976152255 117993320 nhh Organic Remediation Aromatics Nitoaromatics Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.99136461 7.756534938 7.542137908 7.560696027 8.235622777 8.186261395 8.151153458 7.906919016 8.239752459 120404645 CadA Metal Resistance Cadmium Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 7.371515919 7.463055239 7.366432636 7.40940216 7.173195655 7.005571894 7.321291813 50122692 SMR_antibiotics Antibiotic resistance transporter Erwinia carotovora subsp. atroseptica SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 7.174831856 6.719313981 7.112152076 6.653264649 7.254641882 6.836052877 6.719225035 169627850 pstB Stress Phosphate limitation Mycobacterium abscessus 7.379403114 7.412738251 7.347502472 7.174003275 144905556 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.283219556 7.230387027 6.962483583 150020915 ChrA Metal Resistance Chromium Thermosipho melanesiensis BI429 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermosipho;species:Thermosipho melanesiensis; 6.746476358 6.984057654 6.96314892 134093764 ArsC Metal Resistance Arsenic Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 7.287322355 7.544394726 7.033208082 7.409528972 150957394 silC Metal Resistance Silver Klebsiella pneumoniae subsp. pneumoniae MGH 78578 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 7.549390243 7.614430132 7.501032043 7.130705055 7.611066846 7.881192417 7.743836154 7.516291643 7.461518895 117608593 pstC Stress Phosphate limitation Magnetococcus sp. MC-1 superkingdom:Bacteria;phylum:Proteobacteria;genus:Magnetococcus; 7.054692624 7.029882664 6.909013847 251791852 nrfA Nitrogen Dissimilatory N reduction Aggregatibacter aphrophilus NJ8700 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Aggregatibacter;species:Aggregatibacter aphrophilus; 7.719304813 7.367167937 7.361214359 104780414 ahpC Stress Oxygen stress Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 7.407307111 7.439988792 7.500441534 7.235183102 7.541765294 7.755268644 7.335122776 7.515121885 431752 ureC Nitrogen Ammonification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia; 7.850813769 7.453469059 7.337581945 7.08571638 7.682675069 7.572684158 7.700301024 7.264424162 7.472248836 251799172 ara Carbon cycling Carbon degradation Hemicellulose Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.407952187 7.673062927 7.118720427 7.874396754 7.566497971 7.549270054 7.602913186 7.888095077 8.173759109 163261567 ppk Phosphorus Phosphorus utilization Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 7.093982999 7.390051195 7.641785261 6.841773887 6.784542581 119459086 pilin virulence pilin marine gamma proteobacterium HTCC2080 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.527533088 7.341087579 7.201654106 7.438814928 7.078987008 7.468148165 7.076157655 7.22768299 18034302 dsrB Sulphur sulfite reductase Desulfovibrio fructosovorans superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 8.033878281 7.814941279 7.675569213 7.208153235 8.040267453 7.796699716 8.162143477 7.469401336 7.893219338 85711074 mer Metal Resistance Mercury Idiomarina baltica OS145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina baltica; 7.862788584 7.810605339 7.820126259 7.78641338 7.516005782 7.873352562 7.438982398 7.697565357 19552501 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Corynebacterium glutamicum ATCC 13032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 7.157079552 7.06255397 7.194401092 7.183956736 7.023388574 45593180 gyrB other category gyrB Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 8.07944869 7.980075035 7.828598636 7.952761624 8.118675214 8.160969731 8.263288382 7.836241559 7.763876027 34017202 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.615506456 7.587868702 7.553114412 7.446505828 7.747073486 7.983745685 7.800421209 7.80172122 106889315 amyA Carbon cycling Carbon degradation Starch Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 7.741540995 7.875842423 7.594769151 7.30678112 7.925742072 7.641216649 7.687430443 7.590741254 7.679849657 145622070 pulA Carbon cycling Carbon degradation Starch Petrotoga mobilis SJ95 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Petrotoga;species:Petrotoga mobilis; 7.170345311 7.143479878 6.889445465 27359735 alkK Organic Remediation Others Vibrio vulnificus CMCP6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 7.358307151 7.4633974 7.45068526 7.511896953 7.31749953 6.969594915 119670400 pimF Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 7.324025566 7.781198338 7.75354154 7.382525626 7.573081488 8.105973952 7.490107981 7.56603626 7.718134969 206678296 alkK Organic Remediation Others Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.398653242 7.138559332 7.256107043 7.13039428 6.762032787 7.508779348 7.287440889 7.239480311 89513014 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.027307667 7.238442114 6.953100127 6.704739777 7.617205577 7.013953082 6.673583607 6.933275477 157373918 gyrB other category gyrB Shewanella sediminis HAW-EB3 7.422943495 7.108825102 6.999308715 6.751288092 7.351372173 159901129 ppx Phosphorus Phosphorus utilization Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 7.428064282 7.209114043 6.777931777 7.375053736 68190972 CODH Carbon cycling Carbon fixation Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 7.180214137 7.246547003 160901971 cellobiase Carbon cycling Carbon degradation Cellulose Petrotoga mobilis SJ95 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Petrotoga;species:Petrotoga mobilis; 6.975880279 6.738474536 6.939480882 113881895 gyrB other category gyrB Synechococcus sp. CC9311 7.167912232 7.243327395 225204098 pstS Stress Phosphate limitation Proteus penneri ATCC 35198 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus penneri; 7.175056369 7.254191224 7.043906324 7.231817062 146391071 AceB Carbon cycling Carbon degradation others Pichia guilliermondii ATCC 6260 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Meyerozyma;species:Meyerozyma guilliermondii; 7.665613426 7.362205521 7.238794481 7.319521208 7.266632295 7.513858026 7.223444419 7.355396702 126638266 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 7.327100501 7.514556639 7.454349309 6.95712738 7.024399037 7.515602762 62468058 bco Organic Remediation Aromatics Aromatic carboxylic acid uncultured bacterium superkingdom:Bacteria; 7.447872797 7.295459371 7.368939348 7.394891266 7.29903941 7.878067609 7.280759756 7.13884645 7.564039733 237757961 cspB Stress Cold shock Corynebacterium kroppenstedtii DSM 44385 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium kroppenstedtii; 7.56910525 7.556824573 7.300611709 6.996022748 7.378024051 7.726843737 7.232846515 7.347925231 145237418 cellobiase Carbon cycling Carbon degradation Cellulose Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.513562742 7.643283709 7.191717723 7.740555545 7.308060281 7.766055777 7.607362187 7.506428908 7.524462254 89113933 glx Carbon cycling Carbon degradation Lignin Phanerochaete chrysosporium superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 7.017580314 7.286489979 7.12530276 7.296365455 219849583 amyA Carbon cycling Carbon degradation Starch Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 7.571804224 7.7585372 7.552410195 7.242240046 7.780572871 7.860251197 7.600097167 7.63595391 7.589204849 238585867 glx Carbon cycling Carbon degradation Lignin Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 7.60943835 7.235661964 7.081715912 6.918623108 7.191542858 7.08625191 7.036983528 7.390669502 220903877 ahpC Stress Oxygen stress Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 7.640526036 7.61660207 7.416069263 7.460881816 7.607702878 7.901416563 7.308737588 7.514140001 7.099600852 114339765 pimF Organic Remediation Aromatics Aromatic carboxylic acid Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 7.636704011 7.406730527 7.197916856 7.851159641 7.090995373 7.398961227 7.36563865 91682461 bclA Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.478805439 7.998518039 7.186254519 8.030630801 7.493888245 7.838476283 7.816294172 7.569827233 157361210 nifH Nitrogen Nitrogen fixation Bradyrhizobium sp. CCBAU 23011 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.369053786 7.545610815 7.11309086 146146994 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.547620819 7.438142748 7.367256327 7.873767975 7.511600238 7.502265969 7.063202705 7.286855263 77460209 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.520961453 7.842979233 7.860403551 7.393375445 7.8227216 7.899572773 7.839495118 7.896922592 7.232383224 227111708 fnr Stress Oxygen stress Pectobacterium carotovorum subsp. brasiliensis PBR1692 7.602565663 7.159044852 7.188634948 7.348536419 6.755107294 7.241653179 47155106 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 8.308644989 7.932160367 7.808873897 7.962810677 7.812797034 8.24266334 7.765484222 7.619339184 7.481400548 77459107 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.572151809 7.634632432 7.611043955 7.263452366 7.459794412 7.870241769 7.423829577 7.524756341 162415004 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 7.771180824 7.419473119 7.686018878 7.840791119 7.378905863 7.514037574 7.316098622 7.616703212 7.677323488 133737655 pstB Stress Phosphate limitation Herminiimonas arsenicoxydans 7.468822885 7.372585859 7.366697933 7.162060384 7.138008378 7.4073257 6.976189254 6.942733541 157693271 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bacillus pumilus SAFR-032 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pumilus; 8.035161922 8.250310799 8.56135693 7.53240139 8.464283508 7.815370873 8.000779388 8.284141655 8.344045582 83945466 ppx Phosphorus Phosphorus utilization Oceanicaulis alexandrii HTCC2633 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis;species:Oceanicaulis alexandrii; 7.1146269 7.178386056 7.329046788 7.14449218 7.917968431 211905431 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.013021714 8.09006676 7.72582412 7.22124365 7.541820915 7.66111975 7.690708357 7.484671191 68344175 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.0571984 8.20545935 7.913281333 7.886829077 8.072999673 7.827981035 163782387 fnr Stress Oxygen stress Hydrogenivirga sp. 128-5-R1-1 8.022061077 7.893229076 7.613689509 7.791170349 7.701929692 7.492269882 39998412 ppk Phosphorus Phosphorus utilization Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 7.611989627 7.509834638 7.086824776 78224511 hydrogenase Energy process Energy process Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 7.733258589 7.504498377 7.361586725 7.114171692 198258640 sigma_24 Stress Sigma factors Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 7.822836313 7.859974909 7.784377662 7.270256758 7.74677369 7.848397092 7.688107676 7.685298125 8.037360213 218886095 fnr Stress Oxygen stress Desulfovibrio vulgaris str. 'Miyazaki F' 8.260775894 7.497485465 7.75310514 7.707859601 7.913371049 7.673289966 7.437784009 7.593381458 87200076 hrcA Stress Heat shock Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 7.781039201 7.715235404 7.851811112 8.094564876 8.178557679 7.985638264 7.719476104 7.848457476 8.278405859 260858789 ahpC Stress Oxygen stress Leptotrichia hofstadii F0254 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteria;order:Fusobacteriales;family:Fusobacteriaceae;genus:Leptotrichia;species:Leptotrichia hofstadii; 7.209358974 7.146832749 7.182915894 169280 mnp Carbon cycling Carbon degradation Lignin Phanerochaete chrysosporium superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 7.774253949 7.633878447 7.43007063 7.087268206 7.3887418 91215255 gyrB other category gyrB Psychroflexus torquis ATCC 700755 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Psychroflexus;species:Psychroflexus torquis; 7.346642487 7.135101908 7.062858469 7.067712438 7.096870598 260223609 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.176871891 6.907480554 163761654 linB Organic Remediation Pesticides related compound Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 7.744814752 7.56511427 7.5887656 7.694160472 7.551450093 91777605 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.965271562 8.058828131 7.972960099 7.851166665 8.424714659 8.093977113 8.551547809 8.338888815 7.964665398 78707365 gyrB other category gyrB Acholeplasma pleciae 7.434982828 7.161465941 7.084316462 7.645335571 68514125 CopA Metal Resistance Copper Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 7.638567765 7.907339902 7.699101697 7.830622641 7.501897923 8.209052971 7.658553135 7.53381617 7.997058304 56380369 pimF Organic Remediation Aromatics Aromatic carboxylic acid Geobacillus kaustophilus HTA426 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus kaustophilus; 7.698736712 7.697590055 7.614357066 7.306726577 7.795341204 7.60462988 8.0542915 7.680091128 167360777 Catechol Organic Remediation Aromatics Other aromatics Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.786494523 7.598011848 7.527716582 7.049936914 7.533069547 7.692135363 7.222148896 7.57884617 7.409257327 22299710 pstB Stress Phosphate limitation Thermosynechococcus elongatus BP-1 7.472124669 7.200420899 7.099207522 7.545872031 255267341 cda Carbon cycling Carbon degradation Starch Bryantella formatexigens DSM 14469 9.108673447 9.040380131 8.873916372 9.172474964 9.090035527 9.026406471 9.255650136 9.306621198 163858051 nbz Organic Remediation Aromatics Nitoaromatics Bordetella petrii DSM 12804 7.80980682 7.475676191 7.528118198 6.948235689 7.521700741 7.432341396 7.29717055 157804765 APS_AprB Sulphur adenylylsulfate reductase Thiothrix nivea superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Thiothrix; 7.142602647 7.228365949 7.423035189 91778867 silC Metal Resistance Silver Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.815328893 7.805642637 7.431380517 7.301988815 7.970658255 7.886499899 7.778676595 7.548638441 7.592806092 261835657 sigma_32 Stress Sigma factors Halothiobacillus neapolitanus c2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Halothiobacillaceae;genus:Halothiobacillus;species:Halothiobacillus neapolitanus; 7.735066716 7.944019094 8.03820469 7.587434304 7.545609699 8.164252676 7.2813667 7.704882185 7.445570895 226326548 SMR_antibiotics Antibiotic resistance transporter Proteus penneri ATCC 35198 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus penneri; 7.202081331 7.140667322 225170089 hly virulence hemolysin Dethiobacter alkaliphilus AHT 1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Syntrophomonadaceae;genus:Dethiobacter;species:Dethiobacter alkaliphilus; 6.680879778 7.162459741 167583788 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia ubonensis Bu 10.18504601 10.28414228 10.4587164 283438918 sigma_38 Stress Sigma factors Pirellula staleyi DSM 6068 7.821099124 7.809183373 8.104812835 6.918189749 7.914696909 7.81994646 7.645016177 7.89120856 7.47579038 54022347 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 7.207407868 7.142116188 7.384772507 7.300839537 7.074567446 7.061638063 237785656 sigma_70 Stress Sigma factors Corynebacterium kroppenstedtii DSM 44385 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium kroppenstedtii; 8.112409644 7.156235512 7.520683244 7.296778163 7.9011837 7.366027187 17130700 linB Organic Remediation Pesticides related compound Nostoc sp. PCC 7120 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc; 7.743496651 7.344674683 7.185424256 7.245656934 7.624920655 68510310 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.393967492 6.978958225 7.128941881 7.051799635 8.112936853 7.181168809 6.912232755 222480165 CopA Metal Resistance Copper Halorubrum lacusprofundi ATCC 49239 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 8.635790315 8.568452998 8.558914276 8.328137165 8.844949052 8.315344742 8.911462567 8.925704086 8.031575145 56696844 pimF Organic Remediation Aromatics Aromatic carboxylic acid Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 7.81996559 7.038729921 7.508786295 7.101791863 7.360489133 7.396557711 118772235 bclA Organic Remediation Aromatics Aromatic carboxylic acid Xanthomonas albilineans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas; 8.519274604 8.440683989 8.349047712 8.153653034 8.26579318 8.275875621 8.171890574 8.40662148 7.805154999 219954299 CopA Metal Resistance Copper Anaeromyxobacter dehalogenans 2CP-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 7.530844589 7.373915506 7.355920291 6.944490899 7.70048128 7.474675945 7.669513074 77378601 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.146288639 7.260706076 88793485 nitro Organic Remediation Others Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 7.534260539 7.670554086 7.190274807 6.817521709 7.20086396 7.246973278 6.767228089 7.181088141 118053270 ArsC Metal Resistance Arsenic Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.163390825 7.132694724 76881838 pilin virulence pilin Nitrosococcus oceani ATCC 19707 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 7.698215339 7.727786612 7.735928557 7.408157689 7.71275924 8.10629025 7.575432736 7.192719899 7.511298011 220918742 CopA Metal Resistance Copper Anaeromyxobacter dehalogenans 2CP-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 7.524938298 7.433821806 7.593544738 7.431096492 7.364135286 7.594397556 7.668390629 7.479225896 7.353978496 116255356 akbF Organic Remediation Aromatics BTEX and related aromatics Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.543048657 8.00665423 8.245646083 8.005241131 8.247989223 7.914939622 8.250996191 8.247798023 121495598 narG Nitrogen Denitrification uncultured bacterium 7.170992305 7.322947999 7.270983516 927232 bphA Organic Remediation Aromatics Polycyclic aromatics Rhodococcus sp. M5 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7.543019177 7.386888213 7.730749527 6.935932188 7.418254456 7.710948803 7.328026158 7.517060262 7.353621629 15054478 endoglucanase Carbon cycling Carbon degradation Cellulose Aspergillus kawachii superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 7.550066519 7.414177865 7.460674539 7.039487018 7.255713836 7.873727549 7.387272485 7.175987785 7.36902437 170724147 nmoA Organic Remediation Aromatics Nitoaromatics Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.739609858 7.805753904 7.608401253 7.027585889 7.430601159 7.790310386 7.311741011 7.277020432 7.27479538 127513331 Arylest Organic Remediation Aromatics Other aromatics Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 7.729083769 7.293898632 7.176364673 7.381789469 7.250687796 7.620126418 7.062929056 7.01362782 4982015 sigma_70 Stress Sigma factors Thermotoga maritima MSB8 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga;species:Thermotoga maritima; 7.243888434 7.067335466 119403247 BpH Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7.896704116 7.724578829 7.553936911 7.025207847 7.325112262 7.710733832 7.371152054 7.608383458 7.821649862 154152990 ChrA Metal Resistance Chromium Fervidobacterium nodosum Rt17-B1 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Fervidobacterium;species:Fervidobacterium nodosum; 7.668614603 7.470548876 7.48258269 7.137201729 7.519066326 7.81710664 7.542365806 7.17455729 62131456 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 7.261606891 7.221565203 7.125916011 227466323 nplT Carbon cycling Carbon degradation Starch Gardnerella vaginalis ATCC 14019 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Gardnerella;species:Gardnerella vaginalis; 6.929037933 6.770515938 170078010 ppx Phosphorus Phosphorus utilization Synechococcus sp. PCC 7002 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.06094126 7.22440427 7.583895269 7.30089226 6.858421733 7.91466881 7.192336845 7.126477893 7.049648561 255019635 sigma_70 Stress Sigma factors Acidithiobacillus caldus ATCC 51756 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 8.235233632 7.841004273 8.252110156 7.930598583 7.609614764 7.546038313 7.783767902 46850246 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.547359778 7.303821782 62426114 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Brevibacterium linens BL2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium linens; 8.314281594 8.422789554 8.11378572 7.692085324 8.269868118 8.014650775 8.08532027 7.995775631 8.367499827 210154628 pstS Stress Phosphate limitation Clostridium hiranonis DSM 13275 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hiranonis; 7.148868037 6.99048424 7.098265726 260611205 amyA Carbon cycling Carbon degradation Starch Vibrio metschnikovii CIP 69.14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio metschnikovii; 7.599245879 7.900276276 8.137560439 8.076712208 7.990639804 8.095455906 7.982322831 8.11789652 8.181583049 167830692 srt virulence surface protein Finegoldia magna ATCC 29328 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Finegoldia;species:Finegoldia magna; 7.446829793 7.410437444 7.151241488 17545926 sigma_38 Stress Sigma factors Ralstonia solanacearum GMI1000 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 8.553838732 7.910764383 7.965118859 8.184090631 8.012735223 8.055072492 7.913999862 164636745 ChrA Metal Resistance Chromium Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 7.9343271 8.040557218 8.01401865 7.471077419 7.706012851 7.981672082 7.751141972 7.962691381 7.541843568 227348192 pstB Stress Phosphate limitation Corynebacterium pseudogenitalium ATCC 33035 7.391894836 7.215995804 6.946494209 7.509645465 198248165 glucoamylase Carbon cycling Carbon degradation Starch Acidithiobacillus ferrooxidans ATCC 53993 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 7.626722593 7.265518522 7.055104185 7.110317455 7.116347657 159042929 alkK Organic Remediation Others Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 7.157897234 7.379540654 7.301856995 239610523 phenol_oxidase Carbon cycling Carbon degradation Lignin Ajellomyces dermatitidis ER-3 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 7.660458889 7.521170365 7.299353756 7.641544464 7.082773368 70733177 ZntA Metal Resistance Zinc Pseudomonas fluorescens Pf-5 8.100719043 7.928493008 7.833742718 7.542610053 7.952931993 7.868671314 7.902402467 7.534559552 7.827571283 228563676 obgE Stress Radiation stress Dethiosulfovibrio peptidovorans DSM 11002 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Dethiosulfovibrio;species:Dethiosulfovibrio peptidovorans; 7.155349906 6.881818065 7.176257153 6.64574686 7.201790595 5578710 phdCI Organic Remediation Aromatics Polycyclic aromatics Sphingomonas xenophaga superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 7.913195972 7.846966404 7.851022681 7.810080049 7.594108314 7.94504402 7.57401603 7.72755648 8.043775303 227484097 dsrA Sulphur sulfite reductase uncultured prokaryote 7.117936173 6.959236323 6.608790074 7.653213796 7.183504639 6.993428812 126704619 glnA Stress Nitrogen limitation Rhodobacterales bacterium HTCC2150 7.584406112 7.699287575 7.464932261 7.288910838 7.946525487 7.798485726 7.996468844 7.633347965 7.558243843 88920712 FTHFS Carbon cycling Acetogenesis Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 7.480711393 7.468907928 7.622441153 7.261159117 7.571508244 7.573075919 7.55480082 7.58334041 7.519433166 206677478 oxyR Stress Oxygen stress Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.736420942 7.60101685 7.201407168 7.160553597 7.432653384 7.691984373 7.41739507 7.703949176 7.497047361 196251722 glnA Stress Nitrogen limitation Clostridium thermocellum DSM 4150 7.315433396 7.293570434 162954066 pimF Organic Remediation Aromatics Aromatic carboxylic acid Renibacterium salmoninarum ATCC 33209 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Renibacterium;species:Renibacterium salmoninarum; 7.434274236 7.046565017 6.989314944 7.032663872 7.1376815 7.524400276 117991419 atzC Organic Remediation Herbicides related compound Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.46416881 7.567063152 7.994914376 7.687454014 7.837964212 8.020441234 8.075050512 8.111126015 7.626352263 114227181 sigma_24 Stress Sigma factors Alkalilimnicola ehrlichii MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 6.915507477 7.519291165 7.595034231 7.193589396 7.901479608 6.861522173 7.197786165 7.665257563 134097624 pimF Organic Remediation Aromatics Aromatic carboxylic acid Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 7.855114463 7.770711937 7.453295154 7.149474307 7.872786182 7.849668685 7.893816966 7.66852566 7.812507537 114767501 pcaG Organic Remediation Aromatics Other aromatics Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.777258606 7.610156004 7.497038212 7.088079373 7.395578853 7.84821443 7.53158916 6.963078516 55376430 atzA Organic Remediation Herbicides related compound Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 8.158200828 8.33410565 8.214669679 8.071682879 8.637136956 8.228191995 8.535454117 8.601920506 8.486385078 149908977 atzB Organic Remediation Herbicides related compound Moritella sp. PE36 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Moritellaceae;genus:Moritella; 7.974782156 7.694701435 7.525136108 7.845331293 7.874515178 7.606835281 7.697704167 237806212 glnA Stress Nitrogen limitation Pseudomonas syringae pv. oryzae str. 1_6 7.235036753 7.387254947 7.442617396 7.250978978 7.46851287 7.673012033 7.571835135 7.529923731 7.583346422 70732485 4HBH Organic Remediation Aromatics BTEX and related aromatics Pseudomonas fluorescens Pf-5 7.849307645 7.795027315 7.909626858 7.987215337 8.015594131 8.019444485 7.748029526 8.143303921 148550991 tftH Organic Remediation Aromatics Chlorinated aromatics Sphingomonas wittichii RW1 7.891928876 7.976489906 7.833411642 7.08770985 7.986436478 7.668946647 7.510607315 7.761527976 7.762369211 5002292 B_lactamase_A Antibiotic resistance Beta-lactamases Escherichia coli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 7.308963822 6.961900844 124267677 sigma_70 Stress Sigma factors Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 7.771156258 7.588221365 7.548452537 7.540218772 7.87408244 8.028862807 7.962465754 7.639506295 7.739300644 229494882 AceB Carbon cycling Carbon degradation others Rhodococcus erythropolis SK121 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 7.428876763 7.118575834 7.130935946 7.373608911 167747964 fnr Stress Oxygen stress Anaerostipes caccae DSM 14662 7.439679977 7.757901564 7.627293122 121706346 nmoA Organic Remediation Aromatics Nitoaromatics Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7.420756126 7.343279607 7.995872573 8.107283052 7.414805543 8.121981225 7.632419733 7.604211341 8.167132833 258580685 pilin virulence pilin Vibrio mimicus VM603 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 7.385031104 7.503218059 7.527823112 7.21842572 7.785485253 7.810662194 7.775504832 7.672826767 7.735193374 213954074 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Capnocytophaga sputigena Capno superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga sputigena; 7.118245114 7.195932947 239523054 sigma_70 Stress Sigma factors Helicobacter pullorum MIT 98-5489 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter pullorum; 7.18706553 6.876079 7.088686563 6.569290561 7.471245662 227423408 sigma_70 Stress Sigma factors Denitrovibrio acetiphilus DSM 12809 superkingdom:Bacteria;phylum:Deferribacteres;class:Deferribacteres;order:Deferribacterales;family:Deferribacteraceae;genus:Denitrovibrio;species:Denitrovibrio acetiphilus; 7.26814959 7.35853029 6.82558118 7.040618413 6.651492035 7.390205645 7.09794398 6.846789128 7.244222908 255021276 pstC Stress Phosphate limitation Acidithiobacillus caldus ATCC 51756 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 7.539548737 7.384348305 7.27026716 7.441773441 7.800092534 7.945562061 7.658142526 7.283364652 7.667858566 189309492 linD Organic Remediation Pesticides related compound Vibrio tubiashii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.138765092 7.288244156 7.28242584 7.004584507 6.981694478 7.44628833 91710887 ZntA Metal Resistance Zinc Methylobacillus flagellatus KT 7.411802184 7.502455597 7.291762554 7.569594118 7.303916577 7.399638692 29652462 narG Nitrogen Denitrification uncultured bacterium 7.258373066 7.362910072 7.469887141 74038438 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.559727512 7.857805631 7.005510368 7.454344506 7.559613129 7.844461722 7.708025931 32895068 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.014209745 7.349784016 7.035336612 6.890939421 7.048274181 7.349716175 7.254203443 7.294642234 99036559 pimF Organic Remediation Aromatics Aromatic carboxylic acid Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.146348631 7.055899808 6.928973354 6.804801045 83748672 fnr Stress Oxygen stress Ralstonia solanacearum UW551 7.693937884 7.668591623 7.508386453 7.504715572 7.653075398 7.706439916 7.502187102 7.723548889 7.415322987 268614488 sigma_32 Stress Sigma factors Sebaldella termitidis ATCC 33386 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteria;order:Fusobacteriales;family:Fusobacteriaceae;genus:Sebaldella;species:Sebaldella termitidis; 7.345608737 6.867574209 6.846543255 6.645112921 7.235506683 159044875 ChrA Metal Resistance Chromium Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 7.348087215 7.098178202 149204420 sox Sulphur Sulphur oxidation Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.654168919 7.818399512 7.478896569 7.481022536 7.887644226 7.877307551 7.730471211 7.526507622 7.774388987 186476483 MFS_antibiotic Antibiotic resistance transporter Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.414729772 7.901643788 7.589924956 8.088039192 8.171947781 7.980814744 7.864172051 8.064008584 7.783403133 160900313 fnr Stress Oxygen stress Delftia acidovorans SPH-1 8.691107448 8.717406319 8.3466051 8.040865029 8.571051885 8.471901225 8.325293761 8.270874609 196113289 sigma_24 Stress Sigma factors Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 8.052487044 8.051743229 7.987767204 7.408250763 7.792547496 7.883043102 8.033834162 8.15715374 7.907953039 160896452 iro virulence Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.453665917 7.400323492 7.145466597 7.071419095 7.874961248 7.05360357 7.477578605 113724268 nhh Organic Remediation Aromatics Nitoaromatics Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 7.31344288 7.512505517 7.928511668 7.956565596 7.671629675 8.129116767 7.999108603 7.885114235 37726834 dsrA Sulphur sulfite reductase uncultured prokaryote 8.55572852 7.33016947 7.669740314 7.521384014 7.711281068 7.84549315 227161553 arcA Stress Oxygen limitation Proteus mirabilis ATCC 29906 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 7.33283587 7.029243799 26985948 sox Sulphur Sulphur oxidation Chlorobium vibrioforme f. thiosulfatophilum superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Prosthecochloris;species:Prosthecochloris vibrioformis; 7.600598147 7.380997823 7.457036322 7.281518234 7.355458976 7.705139981 7.784305944 7.724635865 7.432289604 95929117 phoB Stress Phosphate limitation Desulfuromonas acetoxidans DSM 684 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Desulfuromonadaceae;genus:Desulfuromonas;species:Desulfuromonas acetoxidans; 7.207084746 7.439223441 7.055262797 7.387215874 163761273 pstC Stress Phosphate limitation Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 7.476944658 7.279057798 7.490507864 7.020531257 7.372828619 7.205184889 7.803455294 197121492 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Anaeromyxobacter sp. K superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 7.509129013 7.684547013 7.314639433 7.510876574 7.762772008 7.731240466 7.618213753 212223160 pstB Stress Phosphate limitation Thermococcus onnurineus NA1 6.908965817 6.85947234 116227958 sigma_24 Stress Sigma factors Candidatus Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 8.055167456 8.132178592 8.015908296 8.389407999 8.372340636 8.162834428 8.182622954 8.422234491 8.148883306 261252054 proV Stress Osmotic stress Vibrio orientalis CIP 102891 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 7.073866193 6.836109258 6.679543258 7.201063272 225169434 clpC Stress Protein stress Dethiobacter alkaliphilus AHT 1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Syntrophomonadaceae;genus:Dethiobacter;species:Dethiobacter alkaliphilus; 7.530221376 7.418806738 7.433555441 7.123394651 6.94834752 6.96641728 7.045172922 7.226626015 47571766 ZntA Metal Resistance Zinc Rubrivivax gelatinosus PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 7.761692966 7.855014753 7.891706408 7.442630746 7.675807995 7.651793423 7.852780528 7.827889913 156536555 glnA Stress Nitrogen limitation Rhizobium giardinii bv. giardinii 7.316782679 7.109592306 7.149822871 6.739818979 7.223690159 7.405428167 32474203 sigma_70 Stress Sigma factors Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 7.717310416 7.254921979 7.494790648 7.134138732 6.911578082 7.869393955 6.995691433 7.033516229 78692941 CODH Carbon cycling Carbon fixation Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.729496155 7.710760837 7.286291918 7.701160261 7.401516841 7.384495397 7.713617997 262276142 pstS Stress Phosphate limitation Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;species:Grimontia hollisae; 6.990048309 7.233374645 7.082275575 209516652 bclA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.562841907 7.796856888 7.389095701 7.121007921 7.564180129 7.789960167 7.401298688 7.372124066 7.439969415 254784574 AceA Carbon cycling Carbon degradation others Teredinibacter turnerae T7901 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 7.580855936 7.391436323 7.507667581 7.224503953 7.305726792 90337780 proV Stress Osmotic stress Aurantimonas manganoxydans SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 8.048445656 8.103609622 7.871731717 7.530574338 8.08371183 7.655047998 8.069471357 7.845863355 8.288686329 145213992 CopA Metal Resistance Copper Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 7.950912397 7.892296133 7.92074235 7.97682033 7.914540688 8.123189999 8.05790387 8.23602787 7.930314653 261252110 ahpF Stress Oxygen stress Vibrio orientalis CIP 102891 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 7.944236305 7.854554835 7.689351926 7.544087964 7.721525714 7.772827443 7.921463221 7.832815101 160860207 pstB Stress Phosphate limitation Shewanella baltica OS195 7.898051404 7.679350075 7.57649927 7.578594584 7.826546855 7.868489199 7.695249475 7.637610384 117992469 nitA Organic Remediation Aromatics Other aromatics Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8.042896286 7.819197807 7.855556004 7.513988552 8.028810104 8.205638021 8.005890234 8.023981296 8.073339565 157370822 fnr Stress Oxygen stress Serratia proteamaculans 568 7.49688009 7.401751627 7.638158264 7.27499177 91682293 fnr Stress Oxygen stress Rhodopseudomonas palustris BisB5 7.060148886 7.370803607 7.310309913 7.714711898 7.461516395 7.213998425 7.41772789 7.288108545 32445936 sigma_24 Stress Sigma factors Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 7.211544517 7.221832717 7.733177392 7.677821412 7.483055357 7.736627101 8.008124757 8.060634846 8.033103079 91693006 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.306547528 7.361113513 7.160953293 6.840547931 7.490055992 7.36445086 7.229972658 169815343 cap virulence capsule Burkholderia cenocepacia MC0-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 7.297943797 7.223554006 7.655498709 7.34953591 7.04718699 7.897436977 7.082977448 6.825478 7.148230438 262079289 sigma_32 Stress Sigma factors Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Haliangiaceae;genus:Haliangium;species:Haliangium ochraceum; 7.705171765 7.917868494 7.97425607 7.755022838 7.975584888 8.088500575 7.686769145 7.905681067 7.926633086 117929058 glnA Stress Nitrogen limitation Acidothermus cellulolyticus 11B 7.672777238 7.816151362 7.534086184 7.349030691 7.770848672 7.879682223 7.749438609 7.575701833 7.930585774 209907290 cellobiase Carbon cycling Carbon degradation Cellulose Enterobacter cancerogenus ATCC 35316 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 7.215272119 7.371563601 7.586124627 7.267399368 6.842211956 7.217028799 6.95935533 7.513392816 256652744 ureC Nitrogen Ammonification Acetobacter pasteurianus IFO 3283-01-42C superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pasteurianus; 7.894123523 7.135193115 7.236149967 7.33901297 6.910468293 179343896 ureC Nitrogen Ammonification Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 7.375442725 7.596488875 7.607030771 7.26519731 7.405039697 7.683860563 167629176 gyrB other category gyrB Heliobacterium modesticaldum Ice1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Heliobacteriaceae;genus:Heliobacterium;species:Heliobacterium modesticaldum; 7.580802125 7.646720233 7.803141461 7.040389065 7.72859474 7.484803079 7.78980191 7.39647665 87134244 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Novosphingobium aromaticivorans DSM 12444 7.980673885 7.813577861 7.459888135 7.444517386 7.803303597 7.920884839 7.685817456 7.775907314 7.462832201 116098632 pstB Stress Phosphate limitation Lactobacillus brevis ATCC 367 7.61929967 7.703625004 8.013691012 7.596790703 7.251918071 212278125 sox Sulphur Sulphur oxidation uncultured bacterium superkingdom:Bacteria; 7.295951619 7.519614963 49280 gdh Nitrogen Ammonification Clostridium symbiosum superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 7.377821301 7.315128703 7.078195933 7.241586572 7.100593427 206575717 xylA Carbon cycling Carbon degradation Hemicellulose Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 7.408423052 7.496130989 7.322319529 7.206037728 7.559984311 7.677817321 7.625433896 7.059920851 7.434836465 46307836 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.444772102 7.193768512 118438151 SMR_antibiotics Antibiotic resistance transporter Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 6.694589875 6.711219426 7.033679504 6.855988024 7.39071131 113898101 gyrB other category gyrB Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 7.884807509 7.727775371 7.494384079 7.441694051 7.686385486 7.884356724 7.485538768 7.403685265 7.688010325 91788125 pstA Stress Phosphate limitation Polaromonas sp. JS666 7.265537458 7.157990233 7.254624143 7.219946926 7.426538844 56460101 pimF Organic Remediation Aromatics Aromatic carboxylic acid Idiomarina loihiensis L2TR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina loihiensis; 7.903847561 7.531075126 7.422081961 7.510450833 7.582974803 7.917346776 7.68678011 7.515837456 7.444694568 89214407 nagI Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas alcaligenes superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.301994068 7.365834296 8.134882685 7.448127464 7.071727294 32562914 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Bacillus sp. JF8 7.396575652 7.106320931 7.145816917 6.921172649 7.530875017 6.918207754 7.134398929 29897375 exochitinase Carbon cycling Carbon degradation Chitin Bacillus cereus ATCC 14579 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 7.542271433 7.323595763 7.38215332 7.147340674 7.644874484 7.056737712 7.315358386 7.576375855 35214218 nplT Carbon cycling Carbon degradation Starch Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 7.121241338 6.665145859 7.165877595 262351669 pstA Stress Phosphate limitation Vibrio sp. RC586 7.255976019 6.863807828 85824143 sigma_32 Stress Sigma factors Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.245631522 7.096002499 7.182154179 6.444174857 7.746049228 7.149313714 7.023527326 87331848 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 7.286675637 7.380140853 7.240194628 7.006917993 7.22822115 7.816816939 7.337017058 7.167562752 7.224353136 112464129 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.73137436 7.561398856 7.565733633 7.526470961 7.727090042 7.513271974 254448692 ahpC Stress Oxygen stress gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.245075134 7.014454563 7.577416509 169126475 mnp Carbon cycling Carbon degradation Lignin Ganoderma lucidum 7.380119726 7.570758793 7.667452149 7.414700999 7.545856926 7.92780872 7.780992848 7.573622971 7.943413158 187717489 sigma_24 Stress Sigma factors Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8.489564993 8.300173607 7.786003669 8.266232741 8.175762325 8.423238579 7.999392576 7.911015441 7.883572005 253686949 sigma_70 Stress Sigma factors Pectobacterium carotovorum subsp. carotovorum PC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 7.881011199 7.524582698 7.324267331 7.182240852 7.285594274 7.775083892 7.484756242 7.311286507 7.383943015 33601244 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bordetella bronchiseptica RB50 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella bronchiseptica; 7.892850934 7.59878738 7.856195774 8.306203136 7.902199771 7.54422067 7.531415447 260607015 phoB Stress Phosphate limitation Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 7.311051227 6.885599475 7.025239151 7.028182541 6.764577678 7.47795922 87311398 nitro Organic Remediation Others Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 7.782746321 7.731241951 7.988386842 7.22632412 8.000942635 7.969594401 7.897001207 7.732215216 76164562 phn Organic Remediation Herbicides related compound Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 7.102198541 7.047037176 7.456655265 6.911455487 6.863612546 7.535892112 7.109403648 7.060331672 260614644 amyA Carbon cycling Carbon degradation Starch Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 7.824567153 7.846889864 7.817230771 7.734762435 7.924370994 8.018272191 8.094689699 7.933625655 7.522002036 187985275 CopA Metal Resistance Copper Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7.025226423 6.987748871 7.37827429 6.638808468 7.615362895 7.016546104 7.319725948 167596214 nirS Nitrogen Denitrification uncultured bacterium 7.978325476 8.492766399 8.105768861 7.96349481 220716881 bclA Organic Remediation Aromatics Aromatic carboxylic acid Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 7.371263979 7.449092008 7.447658438 7.249812188 7.250813725 7.737319617 7.412437183 7.256275335 7.255563049 117994857 TerC Metal Resistance Tellurium Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 7.43647228 7.761752314 8.141527811 7.525851156 7.86036481 7.422812582 7.310810744 7.641683688 88856828 chnB Organic Remediation Other Hydrocarbons marine actinobacterium PHSC20C1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 7.697157767 7.515741599 7.588680809 7.294250916 7.311813461 7.541588541 7.538384948 7.547122032 7.653129737 88806170 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 7.327235841 7.242693309 7.034495383 7.680878007 7.539291406 7.205060923 7.36222604 92393586 TerC Metal Resistance Tellurium Psychrobacter cryohalolentis K5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter cryohalolentis; 7.269738681 6.945948277 7.189556383 6.541843583 7.242793777 29827104 mhpA Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 7.677263372 7.60511513 7.354251663 7.54579758 254442670 hly virulence hemolysin Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 7.615806356 7.32699362 7.364248857 7.309184178 7.283155424 7.224759361 7.031799072 212541664 tfdA Organic Remediation Aromatics Chlorinated aromatics Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.437582705 7.109055349 7.05598552 7.117195605 6.924665153 7.573703896 7.345355048 7.528179766 214031158 mer Metal Resistance Mercury Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.683467326 7.458308925 7.363459265 7.151840109 7.20209341 7.826507948 7.754504203 7.180986931 239827734 pstC Stress Phosphate limitation Geobacillus sp. WCH70 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.054284341 7.211707714 7.286856606 6.777491748 7.500605185 7.228030339 6.961645729 7.541834211 262338746 pstS Stress Phosphate limitation Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.810099594 7.822240511 7.269646936 7.955309377 7.888312759 8.013839518 238935286 AceB Carbon cycling Carbon degradation others Lachancea thermotolerans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Lachancea; 7.578390726 7.535840206 7.353048038 7.739107812 7.763661171 7.591679249 7.667355092 7.444136191 120435833 gyrB other category gyrB Gramella forsetii KT0803 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Gramella;species:Gramella forsetii; 7.363284028 7.183867239 6.506924174 7.452044132 54303519 MFS_antibiotic Antibiotic resistance transporter Photobacterium profundum SS9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 7.794707525 8.157115626 7.919561847 7.355255628 7.404401612 7.512515898 8.176230107 154251411 glnA Stress Nitrogen limitation Parvibaculum lavamentivorans DS-1 7.774067925 7.559197805 7.591336854 7.578183551 7.650491345 7.498273712 7.611344269 7.440992197 83953761 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 7.510556436 7.749081538 7.723891995 7.120500689 7.45476946 7.365393645 7.576950498 83644497 AceB Carbon cycling Carbon degradation others Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 7.704466886 7.787580575 8.04575885 7.539768899 7.992060868 7.792331961 7.904065042 8.103640522 262313038 phoB Stress Phosphate limitation Acinetobacter junii SH205 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter junii; 7.461829625 7.343436504 88857171 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Pseudoalteromonas tunicata D2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas tunicata; 6.918047722 7.126647766 7.016928923 6.477066113 7.676433237 7.115307225 6.962952176 7.230027675 8489803 sigma_70 Stress Sigma factors Nostoc sp. PCC 7120 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc; 7.724679007 7.429299974 6.883944441 7.530981335 189186459 pmoA Carbon cycling Methane Methane oxidation Methylacidiphilum infernorum V4 superkingdom:Bacteria;phylum:Verrucomicrobia;order:Methylacidiphilales;family:Methylacidiphilaceae;genus:Methylacidiphilum;species:Methylacidiphilum infernorum; 7.33373941 7.388102884 7.049939419 6.96318742 6.841532543 74038486 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.225760976 8.006267352 7.862886114 7.867558583 8.070412376 8.141464355 8.081673017 8.163981877 7.804047828 85374031 grpE Stress Heat shock Erythrobacter litoralis HTCC2594 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 7.712293326 7.725906617 8.074861107 7.993589131 7.951273827 8.008496987 8.25551772 8.282342071 59712580 AceB Carbon cycling Carbon degradation others Vibrio fischeri ES114 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Vibrio fischeri; 6.959422286 7.245085239 15887405 AceB Carbon cycling Carbon degradation others Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.906553081 7.989370505 7.660857823 7.254886079 7.728324866 7.706268421 7.371759073 7.466026399 7.826660204 77979820 TehB Metal Resistance Tellurium Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 6.948729305 7.114422961 6.629037193 7.440754033 35214768 grpE Stress Heat shock Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 7.955312957 7.904623133 7.735585466 7.733976166 7.287389735 7.573566166 7.259975325 7.419983723 7.497419088 150024466 pstS Stress Phosphate limitation Flavobacterium psychrophilum JIP02/86 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium psychrophilum; 7.201514755 7.145137916 7.218141048 6.746588102 7.495613817 84376628 oxyR Stress Oxygen stress Vibrio splendidus 12B01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 7.208928221 7.163193566 27355563 atzD Organic Remediation Herbicides related compound Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.492169776 7.389219606 6.811631667 7.506913743 7.367065972 7.825566876 7.406062349 12723616 cydB Stress Oxygen limitation Lactococcus lactis subsp. lactis Il1403 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Lactococcus;species:Lactococcus lactis; 7.180812329 6.832202714 6.930264332 159173752 oxyR Stress Oxygen stress Vibrio sp. AND4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.157375815 7.19637874 7.332280372 7.353580323 7.380885238 7.279321268 7.454285332 124515243 Adaptations_to_atypical_conditionsIII Bioleaching other category Leptospirillum sp. Group II UBA 7.936147932 7.924836589 8.09710302 7.471056838 8.218556977 7.742401113 7.990841718 7.825082381 7.902643958 87136973 iro virulence Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 7.9306821 7.925574501 7.612207386 7.641704868 8.054754235 7.897611572 8.032190691 7.777983346 7.847598562 196178703 clpC Stress Protein stress Microcoleus chthonoplastes PCC 7420 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus chthonoplastes; 7.17347552 7.595153083 7.197973625 7.08421109 7.235392298 6.963784697 7.279275226 7.467981661 42523081 iuc virulence aerobactin Bdellovibrio bacteriovorus HD100 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 7.20280243 7.368747844 7.485467399 7.201153742 7.235403897 7.677715113 7.530662935 7.295563734 7.535506893 218246928 linB Organic Remediation Pesticides related compound Cyanothece sp. PCC 8801 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.242389511 7.316973403 7.304642428 6.850772589 7.193011498 150963501 exaA Organic Remediation Chlorinated solvents Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 7.670972783 7.445725217 7.265199351 7.198611668 7.431153461 7.612321749 7.607438787 7.147306839 200386847 pimF Organic Remediation Aromatics Aromatic carboxylic acid Salmonella enterica subsp. enterica serovar Virchow str. SL491 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 7.052368798 7.09910369 7.144702862 126665657 pimF Organic Remediation Aromatics Aromatic carboxylic acid Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 7.806959479 8.49479349 8.514761095 7.904306129 8.271924121 8.1585576 8.223007997 8.693345643 8.183634985 114797662 sigma_70 Stress Sigma factors Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 7.335073429 7.172705694 7.251596495 7.194458843 7.468555175 260223404 vanA Carbon cycling Carbon degradation Others Curvibacter putative symbiont of Hydra magnipapillata superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 8.380702465 8.110838048 7.559317179 7.666536 7.297607536 7.449316202 7.286516018 7.288890928 103488230 ppx Phosphorus Phosphorus utilization Sphingopyxis alaskensis RB2256 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 7.155881991 7.160057327 167356204 pstC Stress Phosphate limitation Shewanella halifaxensis HAW-EB4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella halifaxensis; 7.518321552 7.354600236 6.967000153 6.767411163 7.271102338 7.72470846 7.184715668 7.08801823 7.727372272 229474868 sigma_24 Stress Sigma factors Planctomyces limnophilus DSM 3776 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces limnophilus; 7.818846763 7.983165267 8.090168842 7.81451353 8.397268123 7.909848271 8.075326358 8.140468717 72162424 TerC Metal Resistance Tellurium Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 8.110745449 8.05702591 7.992094326 8.060587264 8.096699139 7.450092282 7.915712581 4566587 BADH Organic Remediation Aromatics Other aromatics Streptomyces aureofaciens superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7.821943529 7.537872757 7.629321766 7.13079902 7.426865828 7.763776444 7.697773662 7.488189244 7.769686402 73670872 grpE Stress Heat shock Methanosarcina barkeri str. Fusaro superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina barkeri; 7.641283625 7.347559764 7.281870825 7.281838326 7.475151814 7.319245833 7.209748657 75906348 phoB Stress Phosphate limitation Anabaena variabilis ATCC 29413 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena variabilis; 7.418747839 7.439803766 7.147961811 7.251604967 7.383635014 167646419 fnr Stress Oxygen stress Caulobacter sp. K31 7.577685831 7.647835021 7.415233952 7.355825008 115520010 fnr Stress Oxygen stress Rhodopseudomonas palustris BisA53 7.017723523 7.171261709 7.495923853 6.865453644 6.696300057 7.792513507 6.984697969 6.7440792 256035104 sigma_24 Stress Sigma factors Chitinophaga pinensis DSM 2588 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 8.233744157 8.194236701 8.213136035 8.017869538 8.236118759 8.018180088 8.06796573 7.988922756 7.630252279 17936253 xylanase Carbon cycling Carbon degradation Hemicellulose Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.116389574 7.231545082 81076882 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.199436436 6.795319058 7.019851158 6.341497048 7.344120045 39933493 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.17103766 8.133664284 8.016032074 8.350081353 8.054738857 8.077823263 7.931430709 7.902966156 7.646503447 184196022 phtA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.248064193 7.828752378 7.592359664 7.583329869 8.236326043 8.242275839 8.168009214 7.528267987 7.950132989 116493579 gyrB other category gyrB Lactobacillus casei ATCC 334 7.328377595 6.970680252 7.068681515 99037017 nagG Organic Remediation Aromatics Aromatic carboxylic acid Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.839526182 7.753709427 7.861504301 7.801057576 8.504459836 8.556208687 8.096222825 8.220221345 8.063616686 55823453 TehB Metal Resistance Tellurium Streptococcus thermophilus CNRZ1066 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus thermophilus; 7.209225279 7.133465015 6.993965846 6.746812617 6.968563263 7.385275436 7.038746136 6.949287369 7.14583092 99035509 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8.114676835 7.566779646 7.710891114 7.856471722 7.511238471 167667802 atzC Organic Remediation Herbicides related compound Anaerotruncus colihominis DSM 17241 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Anaerotruncus;species:Anaerotruncus colihominis; 7.242179155 7.319537472 7.155032869 6.876704619 6.770259209 7.568859984 7.081624077 7.325770059 183580386 pimF Organic Remediation Aromatics Aromatic carboxylic acid Kocuria rhizophila DC2201 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 8.213489026 7.897046814 7.879661482 7.598810798 7.859072998 7.938841266 7.855742765 7.514323696 254510664 fnr Stress Oxygen stress Rhodobacteraceae bacterium KLH11 7.651582721 7.327287136 7.184749779 7.548822608 7.995528127 8.15858223 8.315929782 8.229897347 90592252 mannanase Carbon cycling Carbon degradation Hemicellulose Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 6.865805178 7.415491703 7.353588572 219676532 pcc Carbon cycling Carbon fixation gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.657148262 7.356606273 7.484145606 7.257091586 7.616402075 7.466605587 7.412142197 156618572 nirK Nitrogen Denitrification Fusarium oxysporum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;genus:Fusarium; 8.049992164 7.610728154 7.706735479 7.935404248 7.804321176 7.984926506 7.888294875 7.346683038 7.666760066 148260675 ATP_synthase_F1_or_F0 Bioleaching other category Acidiphilium cryptum JF-5 7.752281033 7.53069398 7.708694369 7.654005412 7.822357942 7.588668511 7.262514133 7.465517903 91796293 mdlB Organic Remediation Aromatics Aromatic carboxylic acid Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 7.372128677 7.482932347 7.358236078 7.418148742 7.527627404 56678330 ureC Nitrogen Ammonification Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 7.48952031 7.661995201 7.595569264 7.660138977 7.268585853 7.742453828 7.32562848 7.457888756 7.494650387 89094680 ahpC Stress Oxygen stress Oceanospirillum sp. MED92 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Neptuniibacter; 7.066915298 7.344024005 7.242321671 188027633 gyrB other category gyrB Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 7.394615154 7.577421096 7.45947207 7.595947006 7.049633307 7.242320121 7.555921442 159176656 CODH Carbon cycling Carbon fixation alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 7.494896577 7.612706904 7.531125862 7.158278668 7.35078161 7.666600095 7.682105848 7.777862168 7.68306977 167367741 bco Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.711837456 7.940105232 7.617932166 8.043438353 7.948088913 8.212563646 8.173469262 8.105249708 114307112 CopA Metal Resistance Copper Nitrosomonas eutropha C71 7.777517218 7.558778425 7.412513315 7.56286066 7.182756856 7.520783956 7.560269291 7.186677021 7.190125267 118434926 tftH Organic Remediation Aromatics Chlorinated aromatics Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 7.489269513 7.668833055 7.413063023 7.647117388 7.450680564 7.695134435 7.501226626 7.457728279 7.390315774 2852658 hydrogenase Energy process Energy process Desulfovibrio longus 7.75629204 7.831928139 7.75329849 7.509036182 7.810107353 7.983860087 7.942278396 7.757121676 7.749543433 114570679 sigma_70 Stress Sigma factors Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 8.350569986 8.386684491 8.063759827 8.26917423 8.238688784 8.064196971 8.187310139 7.848468334 8.081077765 114705878 ArsC Metal Resistance Arsenic Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 7.816412769 7.735399713 7.174111787 7.287589895 8.120478742 7.86497722 7.73570639 7.429986667 7.768939746 148244796 rubisco Carbon cycling Carbon fixation Candidatus Vesicomyosocius okutanii HA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:Calyptogena okutanii thioautotrophic gill symbiont; 7.856731316 7.359114349 7.700226738 8.174941288 7.97055791 7.914639309 7.982201191 7.91529849 221065097 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.738156961 7.873510826 7.924745098 7.611086811 7.44051425 7.400221668 7.555310239 126668416 TerD Metal Resistance Tellurium Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 7.508897654 7.043348089 7.200617504 7.192309877 7.48179746 149751925 TehB Metal Resistance Tellurium Dorea longicatena DSM 13814 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Dorea;species:Dorea longicatena; 7.052453415 7.098569039 7.421714057 7.033548199 6.798003673 7.452712958 6.940535467 6.730568668 227311352 pstC Stress Phosphate limitation Denitrovibrio acetiphilus DSM 12809 superkingdom:Bacteria;phylum:Deferribacteres;class:Deferribacteres;order:Deferribacterales;family:Deferribacteraceae;genus:Denitrovibrio;species:Denitrovibrio acetiphilus; 7.152111082 6.724655166 83950081 FTHFS Carbon cycling Acetogenesis Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 7.2432801 7.16868587 7.079130334 7.389641937 34017100 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.804209741 7.59382969 7.36992664 7.488482644 7.262085623 7.569039259 7.231567582 7.283537515 90811352 Tet Antibiotic resistance other Streptococcus thermophilus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 7.272251171 7.224897791 7.225106507 6.732636258 6.856784486 7.544386303 7.139836416 7.182957644 226718241 pilin virulence pilin Azotobacter vinelandii DJ superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 7.675479409 7.606620021 7.917656081 7.805365548 7.894194297 7.946864151 7.743045814 8.038409291 7.721212798 241374654 glnA Stress Nitrogen limitation Zymomonas mobilis subsp. mobilis ATCC 10988 7.136129875 7.637837863 7.454413534 7.28329187 7.319030342 73534991 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.277983666 7.226623253 7.315635307 6.853569442 7.439565058 7.058539352 7.11396349 7.363429671 222454145 CopA Metal Resistance Copper Halorubrum lacusprofundi ATCC 49239 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 7.326033098 7.458797897 7.002987866 6.796046302 6.911602166 7.584880378 7.006997062 7.142342835 86569222 amyA Carbon cycling Carbon degradation Starch Frankia sp. CcI3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 7.581584866 7.361107673 7.532298385 7.169803561 7.379218107 7.574891904 7.567015304 7.752877489 7.675270098 29339354 sigma_24 Stress Sigma factors Bacteroides thetaiotaomicron VPI-5482 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides thetaiotaomicron; 7.623932661 7.309022992 8.020168934 8.307838337 7.715018369 8.219576669 7.381903065 7.707210908 7.91013623 27262240 obgE Stress Radiation stress Heliobacillus mobilis superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Heliobacteriaceae;genus:Heliobacillus; 8.072778952 7.932876742 7.321451736 7.39771138 7.560807664 7.561868663 7.553521186 7.451242753 7.189722808 261856057 fnr Stress Oxygen stress Halothiobacillus neapolitanus c2 7.985605682 8.050086111 8.038899794 7.823520769 8.166836689 7.93411607 8.256365545 8.341831377 8.320398863 198262102 czcA Metal Resistance "Cadmium,Cobalt,Zinc" gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.099243684 7.358898092 7.51104073 7.738287196 7.211087219 7.605594265 7.2079145 7.4118845 7.130514749 73537758 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.466840957 7.841904286 8.166357141 8.714938974 7.852796099 8.058461966 8.007539623 7.833242027 33391385 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.518024342 7.607839479 7.650540134 7.895158317 7.346496508 7.520800344 167626098 katE Stress Oxygen stress Shewanella halifaxensis HAW-EB4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella halifaxensis; 7.426596627 7.38100618 7.179913549 7.16973565 7.544512075 7.237933958 7.30135442 12667680 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium UMTRAdsr608-8 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 7.407763418 7.783443883 7.884704148 8.221765447 8.195803801 119449893 chnB Organic Remediation Other Hydrocarbons marine gamma proteobacterium HTCC2143 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.504003485 7.389962175 7.497910088 7.060107572 7.417396346 6.870911517 7.052294869 238783664 cap virulence capsule Yersinia bercovieri ATCC 43970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 7.788714592 7.933312057 7.640029877 7.364123373 7.77972874 7.473866836 7.839204128 7.440230311 7.693819945 218169353 amyA Carbon cycling Carbon degradation Starch Cyanothece sp. PCC 8801 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.604800729 7.582316618 7.592625273 6.927467823 7.306707702 7.537742629 7.599023416 7.442996441 7.480568564 110589328 fnr Stress Oxygen stress Endoriftia persephone 'Hot96_1+Hot96_2' 8.195153049 8.618793227 7.953338088 8.049263325 8.353864761 8.31247397 8.232261358 7.724517879 8.051056174 109457037 Catechol Organic Remediation Aromatics Other aromatics Roseobacter denitrificans OCh 114 7.343363 7.153465311 7.523508417 7.138077212 7.429316104 7.50735345 7.240055089 7.56856824 58002191 ahpF Stress Oxygen stress Gluconobacter oxydans 621H superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter oxydans; 8.030155396 8.271191312 8.102684229 7.611615134 8.428084279 8.182193832 8.244407989 8.055132543 8.336815368 12697570 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. TH2 7.17612794 6.879822558 6.96574519 6.696251345 7.266410317 15024673 pstB Stress Phosphate limitation Clostridium acetobutylicum ATCC 824 6.871328527 7.324433374 6.790789477 149746924 tutFDG Organic Remediation Aromatics BTEX and related aromatics Vibrio parahaemolyticus AQ3810 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.442548585 7.068348288 7.118010188 7.093216441 7.36347055 8.095132859 7.536264635 7.393051459 7.520056928 253701292 B_lactamase_C Antibiotic resistance Beta-lactamases Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 7.240326397 7.211408649 257202829 pstA Stress Phosphate limitation Roseburia intestinalis L1-82 7.459635264 7.405731547 7.475816348 6.825463474 7.475114164 256670941 xylA Carbon cycling Carbon degradation Hemicellulose Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.150187328 8.466086257 8.150221543 7.992674025 8.678952533 8.177909077 8.246040634 7.915850637 8.172627037 84625588 SMR_antibiotics Antibiotic resistance transporter Xanthomonas oryzae pv. oryzae MAFF 311018 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 7.800358206 7.712098589 7.498022282 7.894308606 8.09521742 258622039 vip virulence virulence protein Vibrio mimicus VM573 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 7.630565326 7.512749836 7.321461222 7.115979055 6.996842534 7.50548804 6.972856957 6.90928198 7.27631876 260428545 ppk Phosphorus Phosphorus utilization Citreicella sp. SE45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 7.262128495 7.7727022 7.673405817 7.816058613 7.329540614 8.11255077 7.509857257 7.393332209 7.88740973 27351656 nitA Organic Remediation Aromatics Other aromatics Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.875167994 7.648355266 7.735977879 7.456780519 8.001061597 8.019746631 7.954855377 8.102242461 7.811695597 85682811 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Bionectria ochroleuca superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Bionectriaceae;genus:Bionectria; 7.413445863 7.386415927 7.174993761 6.945456639 7.469916452 7.523526815 7.393243911 7.251655367 7.143388179 119953852 gyrB other category gyrB Mycobacterium vanbaalenii PYR-1 7.424527035 7.117492594 7.213761599 6.969724138 7.615027675 210150264 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Clostridium nexile DSM 1787 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium nexile; 7.071763075 7.071988048 6.98801195 147886234 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 7.149942591 7.014461102 7.238064899 7.082465294 7.027978193 126734307 PobA Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. CCS2 8.288318449 7.961873029 7.938680491 8.094074169 8.119280755 7.845339175 7.822384476 256768767 pstB Stress Phosphate limitation Streptomyces sp. C 7.710727904 7.880325608 7.28794 7.296065486 7.298924829 7.462661472 7.130849236 260214986 pstC Stress Phosphate limitation Cronobacter turicensis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter; 7.918099684 7.357020208 7.569353318 7.843439237 7.736927589 7.398618479 7.483783287 7.614821078 145572246 ureC Nitrogen Ammonification Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 7.454104323 7.343735609 7.04129307 7.401242895 7.570726047 256818910 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Capnocytophaga ochracea DSM 7271 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga ochracea; 7.313410426 7.48010146 7.062156189 7.442105465 7.148386813 7.079873949 270280253 obgE Stress Radiation stress Pediococcus acidilactici 7_4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Pediococcus;species:Pediococcus acidilactici; 7.384346971 7.227893458 7.340104455 6.940820022 7.506031334 262356778 endoglucanase Carbon cycling Carbon degradation Cellulose Bacteroides sp. 2_1_22 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 7.323341852 7.743854678 7.55159409 7.412315664 7.60167467 7.357172753 7.602598075 7.182315263 7.764075355 261343792 ahpF Stress Oxygen stress Providencia rustigianii DSM 4541 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 7.774496296 7.987177608 7.627604427 7.752152807 7.714907415 8.067534965 8.36566637 187922780 ahpC Stress Oxygen stress Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.778608655 7.775051986 7.600533008 6.957687223 7.331095121 7.208888463 7.3695617 7.491937095 7.572197978 77971207 atzA Organic Remediation Herbicides related compound Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.239936593 7.097624345 6.952601671 6.817490115 7.431142342 224018453 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Bacteroides coprophilus DSM 18228 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides coprophilus; 8.044842872 8.238095268 7.936257484 7.417069816 7.661106867 7.942328237 8.301884765 7.93884515 7.94538029 6288867 oxyR Stress Oxygen stress Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 7.743936 7.904716918 7.657863249 7.535751625 8.097242002 7.95570447 8.361755172 8.009549139 7.902269199 11995035 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Burkholderia cepacia superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.720476549 7.5643748 7.757055821 7.874582224 7.773194374 7.916768954 7.884789387 7.881380898 7.949738182 91795230 gyrB other category gyrB Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 7.0592252 6.732262724 7.054491371 6.784332617 7.498025585 169237596 ArsA Metal Resistance Arsenic Halobacterium salinarum R1 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halobacterium;species:Halobacterium salinarum; 7.1562497 7.124250165 7.209992407 119884306 pcc Carbon cycling Carbon fixation Salinispora arenicola CNS205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 7.375132655 7.358203005 6.984037393 6.989077803 7.194879211 7.02174191 145606935 mnp Carbon cycling Carbon degradation Lignin Magnaporthe grisea 70-15 7.302579592 7.238260169 282564130 ABC_antibiotic_transporter Antibiotic resistance transporter Streptomyces sp. ACTE superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7.710023481 7.566506108 7.405368414 7.725824676 7.438660193 7.298405965 7.621313674 71383742 nasA Nitrogen Assimilatory N reduction Synechococcus sp. WH 8008 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.629124121 7.684514867 7.276520332 8.165879419 7.74413792 7.824493199 7.804763697 84685363 mer Metal Resistance Mercury Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.265382682 7.266406785 7.18867643 6.855055582 7.08522207 30962005 B_lactamase_C Antibiotic resistance Beta-lactamases Erwinia rhapontici superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia; 10.1310515 10.16393877 9.868240785 209883532 nagI Organic Remediation Aromatics Aromatic carboxylic acid Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 7.549579091 7.312586183 7.398515744 7.045481331 7.361558221 7.730819927 7.535565347 7.425402245 118435358 sigma_24 Stress Sigma factors Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 7.269008682 7.194315567 197330503 CMCI Organic Remediation Aromatics Other aromatics Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7.442534289 7.208229637 7.409092209 157285383 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.137124851 7.878233478 7.387334046 7.974218715 7.809924071 7.518297565 7.66787031 7.517196494 4406507 cbdA Organic Remediation Aromatics Chlorinated aromatics Pseudomonas aeruginosa 7.680519251 7.754389286 7.55108503 7.57700501 8.038091724 7.862816618 7.637429109 8.001277998 7.797499907 187384863 adpB Organic Remediation Pesticides related compound Stenotrophomonas sp. SMSP-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 7.389616643 7.620066094 7.889960296 8.219464608 7.58012044 258555078 katE Stress Oxygen stress Nakamurella multipartita DSM 44233 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 8.348594339 8.376112477 8.097628313 7.909264333 8.329305694 8.344037354 8.350775686 8.406860969 146301088 CadA Metal Resistance Cadmium Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 7.827990402 7.816883098 7.562781994 7.662523563 7.954431629 7.624787848 7.985016383 7.693962805 7.665249089 88939363 ppx Phosphorus Phosphorus utilization Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 7.458153214 7.392849333 7.351163683 7.163173214 7.142324918 7.656835604 7.392253576 7.337950671 7.137702832 34497295 phn Organic Remediation Herbicides related compound Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 7.311633096 7.289579845 7.680828943 7.43984982 7.26688025 7.960899909 7.103631438 7.146079095 7.262412485 147920037 arsB Metal Resistance Arsenic uncultured methanogenic archaeon RC-I superkingdom:Archaea;phylum:Euryarchaeota; 7.93969503 7.802730074 7.66485705 7.727154221 7.770106442 7.69912499 7.692862705 7.656526345 56908730 narI Stress Oxygen limitation Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 7.746213668 7.401430233 7.468488075 7.186575718 7.744648161 8.092391523 7.441256225 7.408134017 7.6035572 69936335 pulA Carbon cycling Carbon degradation Starch Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 7.896605222 7.863120546 7.422246296 7.405943264 7.988130517 7.851454958 7.589843751 7.706805649 7.743082782 124258126 dehH109 Organic Remediation Chlorinated solvents Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 7.651959934 7.702929634 7.455326992 7.263528306 7.835810434 7.968576838 7.707427408 7.64383784 7.710846548 262297908 phoB Stress Phosphate limitation Acinetobacter radioresistens SH164 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter radioresistens; 7.277190776 6.966451701 91692955 mdlB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.229038572 7.2527459 7.003909355 6.960483947 7.229391654 7.438125855 7.391262259 7.256031883 7.439711005 254503566 sigma_32 Stress Sigma factors Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 7.389798815 7.237154193 7.098571201 237749048 obgE Stress Radiation stress Oxalobacter formigenes OXCC13 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Oxalobacter;species:Oxalobacter formigenes; 8.230289841 7.302954694 7.890801699 8.525034491 7.749056819 8.701112959 8.325739326 146406272 CODH Carbon cycling Carbon fixation Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.911635425 8.883929863 8.733630906 8.754810634 8.727614623 8.666542603 8.91782544 56961900 ctsR Stress Protein stress Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 7.928385025 7.651133655 7.335979423 7.449228952 7.626475247 7.823467286 7.592742842 7.386558571 7.511834413 212674278 hydrogenase Energy process Energy process Desulfovibrio piger ATCC 29098 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio piger; 7.787727848 7.972644642 7.745960886 7.773916651 7.493228872 7.906042472 7.531174073 7.625149818 7.509467268 120556533 pstC Stress Phosphate limitation Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 7.980357393 7.934642483 7.791544494 8.342022672 8.012451919 8.171411434 8.172829142 8.325396206 8.179184394 163855637 nagG Organic Remediation Aromatics Aromatic carboxylic acid Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 7.860072773 7.345327059 7.313625926 7.450657125 7.714846884 7.678923335 7.196978285 7.503816452 212711351 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Providencia alcalifaciens DSM 30120 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 7.642834221 7.901230268 85670420 phn Organic Remediation Herbicides related compound Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.355912543 7.488149557 7.742899012 7.677976102 7.454064224 7.658682449 7.813194563 7.787820556 238026354 ahpC Stress Oxygen stress Burkholderia glumae BGR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia glumae; 7.645078472 7.710271359 7.136612863 7.328322763 7.685063819 7.617672769 7.503826883 7.4280804 209501753 pcaG Organic Remediation Aromatics Other aromatics Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.174521486 7.376650465 7.110335465 7.009441876 7.267775608 7.433013818 6.934185347 7.184654586 7.271994527 223553646 ArsC Metal Resistance Arsenic Tolumonas auensis DSM 9187 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Tolumonas;species:Tolumonas auensis; 7.822912103 8.28834821 7.568171638 7.482623043 8.076159798 7.559023483 7.674043313 7.635870646 7.93561459 83575144 TerD Metal Resistance Tellurium Rhodospirillum rubrum ATCC 11170 7.50556464 7.57786671 7.719013296 7.254649908 7.404121691 7.400338133 7.404863609 7.38055578 113882860 alkK Organic Remediation Others Synechococcus sp. CC9311 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.413120305 7.127870001 7.229795142 7.38327066 238725405 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 7.211144613 6.97227444 19914711 pstC Stress Phosphate limitation Methanosarcina acetivorans C2A superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina acetivorans; 6.92153536 6.901843541 66391835 helicase_family_4 Bacteria phage REPLICATION Aeromonas phage 31 7.134360564 7.118108204 7.212677829 7.092435186 7.508546514 7.181241349 7.112550189 6.818866065 121719751 nbaC Organic Remediation Aromatics Nitoaromatics Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7.317297698 7.425181031 7.115891101 7.374143184 7.195774043 7.182464199 7.276000841 7.224528575 118669121 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.135316151 7.92767156 8.073622529 7.200897828 7.862702938 7.495635316 7.955862587 7.9670059 7.466759699 225851213 fnr Stress Oxygen stress Persephonella marina EX-H1 7.23250564 7.199003469 19113531 phoA Stress Phosphate limitation Schizosaccharomyces pombe 972h- superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Schizosaccharomycetes;order:Schizosaccharomycetales;family:Schizosaccharomycetaceae;genus:Schizosaccharomyces; 7.799330541 8.080316749 7.669478897 7.720690059 8.254305516 7.990369773 8.305583932 8.228464783 8.071726095 77388764 gyrB other category gyrB Rhodobacter sphaeroides 2.4.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 7.637943751 7.930810966 7.989744798 90435895 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 7.506748835 7.523231689 7.558579444 7.489263002 7.606615082 7.513290051 7.720986628 7.603421566 115388179 pheA Organic Remediation Aromatics Other aromatics Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.762097951 7.356627496 7.437344163 7.276562846 7.617723114 7.228583787 6.826986945 112463337 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.325949821 7.359607111 7.081034267 7.658288327 7.562077275 7.462285183 7.325850744 7.58605652 148240963 CusF Metal Resistance Copper Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.246823053 7.470896566 7.346145586 6.899862939 7.286406772 7.595526691 7.562989281 7.372438718 7.344720029 73534177 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.365321729 7.237831791 7.198028107 123442617 alkK Organic Remediation Others Yersinia enterocolitica subsp. enterocolitica 8081 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 7.003600969 6.921771482 7.037424128 46111153 linB Organic Remediation Pesticides related compound Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 7.669804956 7.597675061 7.849383482 7.590103478 7.97346929 7.804671879 7.680002398 7.51051936 126710417 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 7.823663968 7.879468767 7.775896639 7.858141909 8.36250421 8.027542295 8.369944321 7.912617552 8.226048585 158306588 NiR Nitrogen Assimilatory N reduction Acaryochloris marina MBIC11017 7.342528883 7.379652168 7.568018794 7.312644477 7.087570416 7.836960565 7.331284375 7.520900548 7.308172829 214037191 napA Nitrogen Dissimilatory N reduction marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.229830032 7.261742148 7.262094166 6.966001455 7.5983282 29610420 ara Carbon cycling Carbon degradation Hemicellulose Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 7.777184709 7.52612153 7.8649 7.408995048 7.314537905 7.474250038 7.258612593 7.317033583 226309754 sigma_32 Stress Sigma factors Brevibacillus brevis NBRC 100599 7.128694218 6.748338307 7.026461835 6.793165825 7.446720633 192824211 integrase_tyrosine Bacteria phage REPLICATION Mycobacterium phage Pukovnik order:Caudovirales;family:Siphoviridae; 7.582517161 7.466622203 7.203617539 7.553686407 7.257068838 7.727545037 256579017 AceB Carbon cycling Carbon degradation others Desulfomicrobium baculatum DSM 4028 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfomicrobiaceae;genus:Desulfomicrobium;species:Desulfomicrobium baculatum; 7.556695394 7.300691404 7.357199447 7.792631981 7.335175254 237809120 obgE Stress Radiation stress Tolumonas auensis DSM 9187 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Tolumonas;species:Tolumonas auensis; 7.616945303 7.313522759 7.481264253 7.203017919 6.892578961 7.336454033 159904372 sigma_70 Stress Sigma factors Prochlorococcus marinus str. MIT 9211 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 7.460146466 7.077813543 149825639 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Limnobacter sp. MED105 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 7.806578794 7.90006367 7.749562056 8.201285226 7.919994352 7.698751861 8.191432576 7.982705803 74276334 TehB Metal Resistance Tellurium Actinobacillus succinogenes 130Z superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus succinogenes; 7.560627526 7.579039494 7.582320907 7.315258489 7.770212 7.717670078 7.889344595 7.615563548 7.872730909 197298555 nplT Carbon cycling Carbon degradation Starch Ruminococcus lactaris ATCC 29176 7.31938578 7.053655994 219816575 phytase Phosphorus Phosphorus utilization Hypocrea lixii superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 7.162406439 7.302634406 7.903934699 7.018455985 7.624662821 7.721307799 7.605912169 7.870807429 78519228 vanA Carbon cycling Carbon degradation Others Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.920469353 7.918634758 7.917518315 7.405317499 7.984651611 7.878135155 7.844909883 7.838196157 7.761619143 94310131 atzB Organic Remediation Herbicides related compound Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 7.852247641 7.531003143 7.532818069 7.890280048 7.407778866 8.211754486 7.655686693 7.384909754 7.33536735 118023162 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 7.402698994 6.877295221 6.912580506 7.009335787 6.889227608 7.577138931 34017126 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.42745494 7.48374841 7.842677779 7.788829736 7.504135707 7.955476972 7.681572917 7.415065073 7.838160321 238750317 pstC Stress Phosphate limitation Yersinia rohdei ATCC 43380 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia rohdei; 7.428309533 7.429296423 7.404683122 7.126853425 7.144148301 7.656727117 7.110435388 7.131338706 7.294087803 119489974 nmoA Organic Remediation Aromatics Nitoaromatics Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 7.659946666 7.57323399 7.431487034 7.226638801 7.764983942 17429880 alkK Organic Remediation Others Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 7.682457331 7.592745212 7.724611406 7.58386563 7.671715123 7.487055256 7.209028482 7.585352444 33575900 fnr Stress Oxygen stress Bordetella bronchiseptica RB50 7.365773099 7.668750315 7.454512011 7.344454606 7.452614805 7.882953647 7.528013675 7.486325634 7.132382996 226327588 glnA Stress Nitrogen limitation Proteus penneri ATCC 35198 7.073774792 6.667852022 7.131482755 7.035985708 7.026789041 114319411 pilin virulence pilin Alkalilimnicola ehrlichii MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 7.282938734 7.236963058 7.442919647 7.550101325 6.994677725 7.088551582 7.091899052 210067559 iro virulence Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.557954693 7.600316127 7.612019472 7.93245915 7.486222797 8.220589607 7.550781566 7.431859365 7.505812479 62533245 cellobiase Carbon cycling Carbon degradation Cellulose Sporobolomyces singularis superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;genus:Sporobolomyces; 7.327416267 7.262649681 7.403018157 7.252611464 7.147708888 7.624390267 157150909 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Streptococcus gordonii str. Challis substr. CH1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus gordonii; 7.031124224 7.225650386 7.459617139 7.363665562 6.967476979 7.584648022 37726801 dsrA Sulphur sulfite reductase uncultured prokaryote 7.517970915 7.586372458 7.242691843 6.967356586 7.605171441 7.440641889 7.661243164 6.974727685 7.27559806 218267838 CopA Metal Resistance Copper Clostridium hylemonae DSM 15053 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 7.356831727 7.372641289 7.441580585 6.887535619 7.072671824 7.703196055 7.229275125 6.96365737 7.222374818 146147008 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.48046514 7.385669233 7.176486847 7.108796143 7.003975992 7.418837456 126732493 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 7.766732718 7.773579188 7.465500268 7.110559822 8.04012446 7.704676391 7.459133185 7.653196476 109702799 ppx Phosphorus Phosphorus utilization Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 7.441096014 7.108761824 7.104718709 6.602328622 7.595815345 7.065628906 6.929702438 146338773 exaA Organic Remediation Chlorinated solvents Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.481866785 7.381970948 7.433840341 7.638044542 81427781 katA Stress Oxygen stress Lactobacillus sakei subsp. sakei 23K 7.867777204 8.264357989 8.319915092 8.263082353 8.506355446 8.56636855 8.71796467 8.491650665 30249101 Mex Antibiotic resistance transporter Nitrosomonas europaea ATCC 19718 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas europaea; 7.319424374 7.085249332 7.22254647 7.027513778 7.389946921 149927866 B_lactamase Antibiotic resistance Beta-lactamases Limnobacter sp. MED105 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 7.54089729 8.042200586 7.498255753 7.600244138 7.34470468 7.596390235 7.50010717 7.622199708 7.763436892 229853077 cellobiase Carbon cycling Carbon degradation Cellulose Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 7.885538445 7.857592388 7.600766186 8.105051822 7.969562313 8.028500707 8.089893574 7.992358825 7.591434487 227339731 pstB Stress Phosphate limitation Rhizobium sp. NGR234 7.15628079 7.322138128 7.485269146 187602762 amyA Carbon cycling Carbon degradation Starch Chloroflexus sp. Y-400-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus; 7.194617046 7.122698307 6.976343291 6.827415091 7.756815725 7.076637818 7.143135135 90415934 AceB Carbon cycling Carbon degradation others marine gamma proteobacterium HTCC2207 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.38042444 7.462998561 7.157962297 7.49615826 7.87434874 7.409794004 7.5490311 161986637 mer Metal Resistance Mercury Salinibacter ruber DSM 13855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 7.804878416 7.511949062 7.545000382 7.7189766 7.926964728 7.660575329 7.837918276 71557643 MFS_antibiotic Antibiotic resistance transporter Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 7.27855281 7.088109287 6.992478381 7.032239903 7.40486933 78693151 Xamo Organic Remediation Other Hydrocarbons Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.81875216 7.762455824 7.311421508 7.449751665 7.282615042 7.525431388 7.448241122 7.467222595 7.493524616 78355608 cytochrome Energy process Energy process Desulfovibrio desulfuricans G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 7.661694646 7.452877363 118663832 nifH Nitrogen Nitrogen fixation Clostridium cellulolyticum H10 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium cellulolyticum; 6.718908865 7.61842364 32447371 nrfA Nitrogen Dissimilatory N reduction Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 7.312410864 7.474079654 7.09527485 7.330660104 7.284212605 7.322782907 261856654 sox Sulphur Sulphur oxidation Halothiobacillus neapolitanus c2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Halothiobacillaceae;genus:Halothiobacillus;species:Halothiobacillus neapolitanus; 7.906622785 7.476822321 7.387643191 7.941506267 7.680851927 7.533011934 7.807242497 89352411 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 7.368265192 7.298858448 7.425006654 7.327873948 7.448658042 7.649954809 7.709722148 7.598171409 84705219 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Parvularcula bermudensis HTCC2503 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 7.911702836 8.209541074 8.02821734 7.645088955 8.212178609 7.993512412 8.039012545 7.891093714 253782008 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Photorhabdus asymbiotica superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus; 7.424601931 7.071602223 7.282732217 109454943 sox Sulphur Sulphur oxidation Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 8.169643833 7.997816478 115517804 sigma_24 Stress Sigma factors Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.813123899 7.48164728 7.632960537 7.871548604 7.97743859 7.529140789 7.712842481 7.744254447 126721470 pstB Stress Phosphate limitation Roseobacter sp. SK209-2-6 7.809511528 7.768972682 7.891471146 7.936570173 8.224347921 8.017030359 8.245462304 8.063809002 7.945612109 106762431 amyA Carbon cycling Carbon degradation Starch Psychromonas ingrahamii 37 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas;species:Psychromonas ingrahamii; 7.273593029 7.303116631 7.261600734 6.899835627 7.383859857 7.678768469 7.419547004 7.101483014 7.23757642 156450782 CopA Metal Resistance Copper Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 7.505819669 7.628806435 7.200631789 7.060767087 7.401781172 7.611041426 7.464772897 7.13497109 6.996222808 85775216 sox Sulphur Sulphur oxidation Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 7.634001455 7.853293518 7.674386328 7.881069082 7.96933628 8.456301845 8.226091773 8.165136368 166078306 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.127913078 7.298792242 148259737 glycosyl_transferase_EPS Bioleaching EPS Acidiphilium cryptum JF-5 7.114339309 6.933998809 7.27365274 7.031708306 7.062011416 7.252511751 268616592 nplT Carbon cycling Carbon degradation Starch Sebaldella termitidis ATCC 33386 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteria;order:Fusobacteriales;family:Fusobacteriaceae;genus:Sebaldella;species:Sebaldella termitidis; 6.989750845 7.136095028 7.014327864 6.62870294 7.267147533 7.03355908 6.887573338 7.348823403 206686162 napA Nitrogen Dissimilatory N reduction Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.514375145 7.992254945 7.799310171 7.789339002 7.47512723 7.412512069 112188328 phoA Stress Phosphate limitation Bacillus licheniformis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.101005567 7.346149187 109290249 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6.936611606 6.934196489 7.285302861 83945394 SMR_antibiotics Antibiotic resistance transporter Oceanicaulis alexandrii HTCC2633 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis;species:Oceanicaulis alexandrii; 7.510548056 7.456898818 7.292682008 7.454765384 7.488360468 7.61343425 7.58638748 163858894 CusF Metal Resistance Copper Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 7.719164193 7.486759498 7.353848671 7.248207282 7.265143515 7.807541588 7.452499942 7.178545649 7.352694744 242262684 sigma_24 Stress Sigma factors Clostridium cellulovorans 743B superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium cellulovorans; 7.210742634 7.537651572 6.983923803 6.839889808 6.84837255 146192386 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.978922453 7.885683488 7.970485769 8.134103057 7.507812961 7.970807357 7.4804783 7.78122638 13625822 gdh Nitrogen Ammonification Peptoniphilus indolicus superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Peptoniphilus; 7.408543428 7.323815497 7.250527411 257797990 fnr Stress Oxygen stress Desulfohalobium retbaense DSM 5692 7.047724394 7.164641846 7.111428403 6.945332038 7.223333247 170016433 xylA Carbon cycling Carbon degradation Hemicellulose Leuconostoc citreum KM20 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc citreum; 7.101858713 6.86449111 7.122091627 7.194477925 6.550714734 15551693 gyrB other category gyrB Serratia grimesii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 7.472784573 7.311448774 7.048517987 7.355660039 7.437600622 7.523888255 114568754 sigma_24 Stress Sigma factors Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 7.62625462 7.560122736 7.25820383 7.25472652 7.522868023 7.535001169 7.499718337 7.480130249 7.777042009 259507849 AceB Carbon cycling Carbon degradation others Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 7.170038968 7.264863446 7.112936429 6.926068282 7.45811887 149190714 pstB Stress Phosphate limitation Vibrio shilonii AK1 8.473280671 8.178575927 7.761746429 8.049414231 8.104752052 8.165186981 8.110773886 7.901855067 7.952427652 271500585 vip virulence virulence protein Dickeya dadantii Ech586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 6.935788179 7.003529384 7.662647166 7.511641351 7.205980899 7.918416277 7.309686558 7.315402796 6.952767995 71147273 pstB Stress Phosphate limitation Colwellia psychrerythraea 34H 6.976089552 6.97040994 7.03257687 7.346008496 7.360795372 68264625 AceB Carbon cycling Carbon degradation others Corynebacterium jeikeium K411 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 7.683521723 7.443575241 7.210985658 7.152462508 7.789515465 7.729453845 7.488222779 7.19394082 7.402258388 126170617 obgE Stress Radiation stress Pseudomonas aeruginosa C3719 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 7.80640258 8.135111616 7.91762207 8.102894894 8.044063635 8.014479427 7.831230031 7.41383685 114738636 phoB Stress Phosphate limitation Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 7.337839536 7.095730293 38234350 obgE Stress Radiation stress Corynebacterium diphtheriae NCTC 13129 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium diphtheriae; 7.335809898 7.22973508 7.563231929 7.255441158 7.070377339 7.668343904 7.37843395 7.300286289 3142157 scnABC Organic Remediation Others Thiobacillus thioparus superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 7.090116785 6.959409953 27375529 linB Organic Remediation Pesticides related compound Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.610945402 7.591278253 7.493122432 7.498287022 7.904824164 7.69103485 7.904013991 7.56136501 7.884156599 126463191 cytochrome Energy process Energy process Rhodobacter sphaeroides ATCC 17029 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 8.409904691 8.520154609 8.603055367 8.46789196 8.978000585 8.49150253 8.755357032 8.514329781 8.415547459 116096009 fnr Stress Oxygen stress Lactobacillus gasseri ATCC 33323 7.362954568 7.236332717 7.383194401 7.095254916 7.107159985 7.5668573 7.423543199 7.420230354 7.480365519 257451015 MATE_antibiotic Antibiotic resistance transporter Actinobacillus minor 202 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus minor; 8.057114068 7.989910871 8.013567506 7.839966644 8.163950882 7.764665269 8.010761037 110287396 ahpC Stress Oxygen stress Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 7.378462855 7.187455644 6.947602412 6.80573515 7.758662118 229539835 SMR_antibiotics Antibiotic resistance transporter Planctomyces limnophilus DSM 3776 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces limnophilus; 8.081528914 8.01027192 7.96352383 7.675385075 8.240190597 7.749022503 7.911845135 7.943504508 7.878914622 123987342 iro virulence Microscilla marina ATCC 23134 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Microscilla;species:Microscilla marina; 7.19855358 7.136650424 251808900 pstC Stress Phosphate limitation Gallionella ferruginea ES-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Gallionella;species:Gallionella capsiferriformans; 7.05460323 7.52822846 7.354568443 6.745298122 78778519 CopA Metal Resistance Copper Prochlorococcus marinus str. MIT 9312 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 7.550717294 6.991519009 7.579610849 6.915514035 6.640032423 7.399571319 7.030296911 6.928515273 7.334023851 94310327 AceA Carbon cycling Carbon degradation others Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.140350998 8.17078623 7.941922291 7.98441249 8.614590424 8.200306978 8.308882173 8.282252007 8.443753785 120595006 nagL Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 8.125697478 7.782507053 7.991396476 7.390292269 7.839433497 7.950285838 7.982493685 7.990619661 7.499080447 253690625 pstA Stress Phosphate limitation Pectobacterium carotovorum subsp. carotovorum PC1 6.93844603 6.841369341 7.172109531 7.555586569 6.978912427 34482270 ppx Phosphorus Phosphorus utilization Wolinella succinogenes superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Wolinella; 7.285768117 7.084114454 7.109236982 6.828446266 7.509042074 84375461 ppx Phosphorus Phosphorus utilization Vibrio splendidus 12B01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 7.33405314 7.514373663 7.288228178 186680668 grpE Stress Heat shock Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 7.421585298 7.366570355 6.995866119 7.068125129 7.148026177 7.583258907 7.457270421 7.104028176 6.936812914 57998217 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.23321251 7.101919812 7.725062711 7.235879327 7.308217047 7.599856231 7.292967789 7.343248185 7.534380585 256644605 ahpC Stress Oxygen stress Acetobacter pasteurianus IFO 3283-26 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pasteurianus; 7.447745001 7.262974087 7.25965413 7.34900714 7.291613304 7.190785118 62391245 Catechol Organic Remediation Aromatics Other aromatics Corynebacterium glutamicum ATCC 13032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 7.269312913 7.311162633 7.315226778 6.960166917 6.958015536 7.667160826 7.119904957 7.120667514 7.729242369 163662277 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Methylobacterium extorquens PA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 7.677605212 7.521138993 7.342268429 6.975103008 7.373385467 7.508118218 7.481304448 7.28110758 7.351646475 196198451 ctsR Stress Protein stress Clostridium thermocellum DSM 4150 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 7.392285617 6.992071732 90578856 dmsA Organic Remediation Others Vibrio angustum S14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium angustum; 6.994880832 7.070792026 6.942119067 126742240 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 7.414500632 7.337982935 7.29428843 6.961246075 6.964134839 7.509711679 7.188300434 7.253105011 258584352 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Vibrio mimicus VM573 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 7.249228986 6.78183009 7.066379988 6.759815243 6.900365841 71735730 katE Stress Oxygen stress Pseudomonas syringae pv. phaseolicola 1448A 7.643169743 7.343811504 7.249114916 6.947949478 7.395960211 7.670254834 7.183812134 7.191807417 7.459670347 89332530 narJ Stress Oxygen limitation Desulfitobacterium hafniense Y51 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 7.415558628 7.408566214 83848337 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Croceibacter atlanticus HTCC2559 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Croceibacter;species:Croceibacter atlanticus; 7.440401302 7.342716356 7.572233802 7.321583098 7.579531306 7.806536142 7.318993209 7.312660487 7.58451636 259415942 phoB Stress Phosphate limitation Silicibacter sp. TrichCH4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.394363689 7.682129214 7.413684295 6.900190549 7.267609551 7.476830944 7.53827714 7.659008257 172038918 grpE Stress Heat shock Cyanothece sp. ATCC 51142 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.296332059 7.688020188 7.698747829 7.123554764 7.898900703 7.837063211 7.913598428 7.753211955 7.76597339 284006888 type_III_secretion virulence secretion Arsenophonus nasoniae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Arsenophonus; 7.296045774 7.091686129 7.163158232 7.010529453 7.394092517 262079045 amyA Carbon cycling Carbon degradation Starch Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Haliangiaceae;genus:Haliangium;species:Haliangium ochraceum; 8.101056754 8.012068352 7.403955074 7.522629602 8.076769077 7.752577061 7.722484851 7.630381466 7.873785798 126197107 fnr Stress Oxygen stress Pseudomonas aeruginosa 2192 7.3103325 7.139565071 7.558119855 6.866282282 7.009959674 7.78550661 7.320823637 7.176540702 7.322124151 146311774 TehB Metal Resistance Tellurium Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 7.585904871 7.516550904 7.508530195 7.10078725 6.986016094 7.616362183 77458979 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens Pf0-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.258617806 7.278563127 7.665107686 7.104443703 7.410642321 7.817335728 7.184190535 7.470610992 148513739 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.159093752 7.320130239 7.28357829 7.230665715 189424151 sigma_70 Stress Sigma factors Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 7.186578445 7.399413766 7.339365407 7.494793604 7.209214972 7.678402577 7.309853944 7.304485427 21322687 mer Metal Resistance Mercury Pseudomonas fulva superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.194822599 7.076774814 7.383778179 7.121551475 6.954217192 7.414811319 227069619 NiR Nitrogen Assimilatory N reduction uncultured archaeon 8.199845549 8.356831865 8.309658511 7.758612025 8.532989057 8.051089076 8.210324962 8.41735067 8.031616776 33575312 nagG Organic Remediation Aromatics Aromatic carboxylic acid Bordetella bronchiseptica RB50 7.563754175 7.660652253 7.519632321 7.556262358 7.59063284 7.44142393 7.274224657 7.518599713 49333361 endoglucanase Carbon cycling Carbon degradation Cellulose Volvariella volvacea superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pluteaceae;genus:Volvariella; 7.304732155 7.380999404 7.511524733 6.719194311 6.929002956 7.466697047 7.003560298 6.977522917 7.186071007 221563493 hrcA Stress Heat shock Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 7.408034524 7.657482125 7.521664274 7.220525071 7.104940024 7.717560256 7.384935224 7.354165686 7.335498143 56698616 pimF Organic Remediation Aromatics Aromatic carboxylic acid Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 7.318032965 7.655405069 7.594870681 7.865405095 8.27215308 189346295 sigma_24 Stress Sigma factors Chlorobium limicola DSM 245 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium limicola; 7.790085885 7.706076401 7.589389011 214039788 AceB Carbon cycling Carbon degradation others marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.62123817 7.357582213 7.313041284 7.265961323 7.493647151 7.001295151 7.493380616 112821413 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Sphingomonas sp. KA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 7.894645034 7.567394454 7.831959668 7.31906047 7.627326202 7.845023712 7.74363991 7.882766795 7.670651353 211587114 pcpE Organic Remediation Herbicides related compound Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 7.291536395 7.301856485 7.376197328 7.235475582 7.363583781 7.472294037 170721562 B_lactamase_C Antibiotic resistance Beta-lactamases Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.626180141 8.608453051 8.528330814 8.51575723 8.470529813 8.223223513 8.136731554 8.288743954 8.273664423 171989421 pstB Stress Phosphate limitation Exiguobacterium sibiricum 255-15 6.899581711 7.306784654 150029927 gyrB other category gyrB Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 7.90720696 7.761022266 6.8687737 7.673859812 7.344381464 7.144394394 7.426829691 19909629 gyrB other category gyrB Rhodoblastus acidophilus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodoblastus; 7.995649794 8.027202415 7.952270398 7.656416886 7.750782108 85374189 pimF Organic Remediation Aromatics Aromatic carboxylic acid Erythrobacter litoralis HTCC2594 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 7.639727972 7.553121189 8.013022171 7.686579897 7.989859988 7.732650371 8.133312857 7.888157692 7.852435539 172038106 ChrA Metal Resistance Chromium Cyanothece sp. ATCC 51142 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.605323836 6.847325601 7.097959905 6.777779739 7.221291605 7.122186278 7.111361833 7.056162423 86606157 sigma_24 Stress Sigma factors Synechococcus sp. JA-3-3Ab superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.512696654 7.435167722 7.304857438 6.933576442 7.284122384 7.455240338 7.090895529 7.065200881 7.438385485 152023620 Al Metal Resistance Aluminum Bacillus cereus subsp. cytotoxis NVH 391-98 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cytotoxicus; 6.939035662 6.98856482 7.202956838 6.663789079 7.317096904 261836999 sigma_38 Stress Sigma factors Halothiobacillus neapolitanus c2 7.272337963 7.376791032 7.628863612 7.814673969 7.401411895 7.237568142 7.596675262 7.389205627 91783660 tfdA Organic Remediation Aromatics Chlorinated aromatics Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.490703544 7.565476551 7.674207049 7.475233253 7.479759461 7.898344554 7.858626106 7.757102641 7.580196817 28203340 dsrA Sulphur sulfite reductase Clostridium tetani E88 7.440509686 7.482732468 7.419073292 7.146114324 7.445354993 7.712701568 7.70624319 7.675386186 7.707145887 189212050 BpH Organic Remediation Aromatics Aromatic carboxylic acid Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7.539520891 7.400763401 7.900807363 7.740948161 7.503682353 8.250552057 7.61953394 7.623514058 7.57882334 209958355 alkJ Organic Remediation Other Hydrocarbons Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 7.605649846 7.511322612 7.415021872 7.741596814 7.790515074 7.551313673 7.732631205 10579796 ZntA Metal Resistance Zinc Halobacterium sp. NRC-1 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halobacterium;species:Halobacterium salinarum; 7.818249609 8.107099535 7.764602409 7.457312346 8.367932962 7.732386618 8.336026573 8.356324218 7.901067987 211905591 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.426610804 7.50481512 154173896 CorC Metal Resistance Cobalt Campylobacter curvus 525.92 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter curvus; 8.034287326 7.922460566 7.447219758 7.689654596 7.74465166 7.83742146 7.687463209 7.340292544 7.389299142 257447470 pstS Stress Phosphate limitation Enhydrobacter aerosaccus SK60 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Enhydrobacter;species:Enhydrobacter aerosaccus; 7.639001587 7.524811135 7.110987392 7.229502769 7.327110595 113936557 alkB Organic Remediation Other Hydrocarbons Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 7.953377251 8.115674953 8.018468264 8.274667718 7.809121843 7.713162452 7.492817634 7.40436829 68347567 ppx Phosphorus Phosphorus utilization Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.272896017 8.432515452 8.263571867 7.692229589 8.206107348 7.845235646 7.890192499 7.805271739 8.143582102 118502249 nitro Organic Remediation Others Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 8.161673191 7.862669365 7.829504655 8.366185046 8.580428006 8.261414842 8.548092841 8.362321147 8.059830829 192801381 ChrA Metal Resistance Chromium Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.440252783 7.421374375 7.357789038 7.145377622 7.821298742 7.41892908 7.534999374 207739595 pilin virulence pilin Ralstonia solanacearum IPO1609 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 7.643227018 7.427782767 7.40919035 7.702210728 7.41477638 8.000406507 7.463099199 7.50271053 212667051 pulA Carbon cycling Carbon degradation Starch Bacteroides finegoldii DSM 17565 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides finegoldii; 7.106386521 7.144109391 6.906257347 6.906404229 7.547959832 7.0866007 6.825767894 78168956 pstB Stress Phosphate limitation Synechococcus sp. CC9902 7.106962691 6.91033154 56783445 amoA Nitrogen Nitrification superkingdom:Bacteria; 7.546713443 7.568264662 7.49556947 7.124638556 7.430589202 7.593528227 7.652308466 7.400420646 7.600525602 94314064 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 7.839978991 7.616017773 7.463697987 7.725616822 7.841978978 7.897264441 7.943591392 86165871 atzB Organic Remediation Herbicides related compound Marinomonas sp. MED121 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 7.469853132 7.627863666 7.416835441 7.494954269 7.699100872 126577842 catB Organic Remediation Aromatics BTEX and related aromatics Algoriphagus sp. PR1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cyclobacteriaceae;genus:Algoriphagus; 8.056783279 7.794514752 6.838595895 7.62517594 7.45151826 7.250107988 7.542016055 13508173 dnaK Stress Heat shock Mycoplasma pneumoniae M129 6.846616296 7.046431652 7.078709198 149178898 pstA Stress Phosphate limitation Planctomyces maris DSM 8797 7.850428005 7.656210602 7.637184189 7.181595509 7.672989384 7.653947553 7.797185384 7.748120762 7.134455698 257789832 sigma_24 Stress Sigma factors Eggerthella lenta DSM 2243 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Eggerthella;species:Eggerthella lenta; 7.014848957 6.987766007 6.688635183 6.991014752 7.446867335 255010023 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Bacteroides fragilis 3_1_12 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 8.294353383 7.791560882 7.878987526 7.749352104 7.789232601 8.084159947 7.613624414 7.558780399 7.775072789 84518495 ppx Phosphorus Phosphorus utilization Prochlorococcus marinus str. MIT 9211 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 7.147093634 7.134517994 6.583491679 7.420602978 94550291 pimF Organic Remediation Aromatics Aromatic carboxylic acid Acidobacteria bacterium Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 7.654016375 7.693842601 7.487746905 6.860163961 7.480979081 7.797494786 7.185140146 7.359909304 7.218657039 110632316 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.252386887 8.274939843 7.892461745 8.099036305 8.134339171 8.090710169 7.79710707 7.849393012 7.881866077 27530685 rubisco Carbon cycling Carbon fixation Rhodobacter veldkampii superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 7.479208442 7.520016315 7.324732465 7.464029603 7.230204322 7.847824172 7.205400665 7.644029682 256796005 sigma_24 Stress Sigma factors Kangiella koreensis DSM 16069 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Kangiella;species:Kangiella koreensis; 8.057446813 7.928407894 7.799566356 7.743324065 7.689746319 7.865469323 7.520075277 7.7646925 7.465282466 260418103 pstB Stress Phosphate limitation Silicibacter lacuscaerulensis ITI-1157 7.570358947 7.760998448 7.772344299 7.448853166 7.574267096 7.638508287 7.552371254 118066437 pcaG Organic Remediation Aromatics Other aromatics Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 7.246949911 7.320095659 7.467636544 7.397849721 7.068496687 218663599 endoglucanase Carbon cycling Carbon degradation Cellulose Rhizobium etli IE4771 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.860833798 8.008610279 7.698500679 7.228016992 7.582305123 7.647028365 7.550769065 7.853052936 8.029184071 34556395 ureC Nitrogen Ammonification uncultured bacterium superkingdom:Bacteria; 7.785421567 7.795305695 7.550485474 7.491685931 7.476297329 7.768103339 7.665915191 7.966569882 7.540662539 15130898 phytase Phosphorus Phosphorus utilization cf. Ceriporia sp. CBS 100231 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Ceriporia; 7.955598848 7.933773433 7.859966236 8.164279262 8.016831455 8.104375534 7.812708536 7.731736671 194349544 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 8.006738323 7.327469606 7.161274873 7.561396731 7.204887321 7.149902995 171742625 mannanase Carbon cycling Carbon degradation Hemicellulose Bifidobacterium dentium ATCC 27678 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium dentium; 7.5246453 7.678640849 7.92094999 8.068867482 7.600052931 8.118388383 7.434503707 7.511326801 7.698679292 227198777 glnA Stress Nitrogen limitation Corynebacterium striatum ATCC 6940 7.405099249 7.186523449 7.458778528 6.747671439 7.380272222 7.148911211 6.792403788 7.053274845 39936362 alkK Organic Remediation Others Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.219894083 7.276750913 7.659298545 7.768405823 7.445863881 7.916041878 7.466634663 7.459722785 7.609579097 119446171 AceA Carbon cycling Carbon degradation others Alteromonadales bacterium TW-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales; 7.374438133 7.475450654 7.244133465 6.792368913 7.318735096 7.635628343 7.303441725 7.052689584 7.380551598 106771323 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 6.752875218 7.164159889 7.075613445 6.706265333 7.13064333 7.567766877 6.915748985 117992214 nitA Organic Remediation Aromatics Other aromatics Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8.218502399 7.893044393 8.040802667 7.576699732 8.241154402 7.925005552 7.798291139 8.2352995 7.799585686 160356445 ChrA Metal Resistance Chromium Bacillus selenitireducens MLS10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus selenitireducens; 7.539636253 7.655120451 7.55170649 7.498547174 7.429651285 7.480592522 7.472151326 7.655500234 198270009 ara Carbon cycling Carbon degradation Hemicellulose Bacteroides plebeius DSM 17135 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides plebeius; 8.513219879 8.498236725 8.435948413 8.071457275 8.652654969 8.428517193 8.531926561 8.582817142 8.536212068 254463647 pstC Stress Phosphate limitation Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8.084512411 7.814293119 7.783311962 7.224378402 7.708678476 7.551452261 7.470381731 7.755531025 7.325022503 117993073 nhh Organic Remediation Aromatics Nitoaromatics Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.30715922 7.507219576 7.478027477 7.380540698 7.691738991 7.358099372 7.806518072 7.850947396 268163639 pilin virulence pilin Photobacterium damselae subsp. damselae CIP 102761 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium damselae; 7.808604689 7.755705897 7.471983813 7.016343723 6.969807563 7.811639246 7.357210441 7.873533348 8.042251595 118469324 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 7.377871729 7.610041517 7.754195834 7.442196899 7.511181123 7.330449342 7.502747352 22003692 mcrA Carbon cycling Methane Methane production uncultured euryarchaeote superkingdom:Archaea;phylum:Euryarchaeota; 7.621234121 7.541317367 7.237374995 7.318024449 7.501750952 7.761148344 7.099577907 7.394762126 91789243 vanA Carbon cycling Carbon degradation Others Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 7.445486641 7.960387933 7.733126843 7.742857954 8.028728577 8.12767764 8.040968403 7.606990999 7.580009961 88944312 CopA Metal Resistance Copper Desulfotomaculum reducens MI-1 7.252317005 7.067499186 41408362 obgE Stress Radiation stress Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 7.611328876 7.522089941 7.389581181 7.463540879 7.917141571 7.365657493 7.601073572 7.835634407 126710209 glnA Stress Nitrogen limitation Sagittula stellata E-37 7.545966467 7.703153312 7.516179634 7.511888156 7.618248774 7.922199308 167660765 CopA Metal Resistance Copper Clostridium scindens ATCC 35704 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium scindens; 6.884832813 7.373059979 7.362221622 7.211311373 6.889252236 7.787725823 7.026093092 7.625588873 72163140 pstC Stress Phosphate limitation Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 6.94191978 7.285001891 7.3236247 7.090436849 7.060273874 7.655402029 6.968986868 7.064715977 7.295495477 163791546 hly virulence hemolysin Carnobacterium sp. AT7 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Carnobacteriaceae;genus:Carnobacterium; 7.384345764 6.929278103 162146153 exaA Organic Remediation Chlorinated solvents Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 6.798193241 7.363853711 7.206339251 7.017246379 7.717317662 7.209109603 7.032825291 262219947 pstB Stress Phosphate limitation Grimontia hollisae CIP 101886 7.866780599 7.647485209 7.643463639 7.70032383 7.586009379 7.636245427 7.704574328 7.730361065 7.71045532 148513602 silC Metal Resistance Silver Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.732691004 8.439905446 7.722111056 8.312305553 8.158118459 8.286301588 8.211649654 8.218136373 84685575 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.47733803 7.182361502 7.561302717 7.210424352 7.359488175 7.281398607 7.73774805 117927890 pimF Organic Remediation Aromatics Aromatic carboxylic acid Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 8.484284534 7.636266546 8.070884526 8.480661391 8.116237621 8.190707991 113530176 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 7.807634471 7.310583272 7.699051645 7.759288304 7.605573115 7.333315841 7.59325567 212672683 dsrA Sulphur sulfite reductase Desulfovibrio piger ATCC 29098 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio piger; 7.853689276 7.92742263 8.060426502 8.261488248 8.496396488 8.426231768 8.313117323 8.332766229 4335910 fimbriae virulence fimbriae Escherichia coli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 7.214890538 7.278208546 7.524441655 7.352197222 7.237633991 7.411887223 7.26446385 7.173244203 7.658340551 68535219 ahpF Stress Oxygen stress Corynebacterium jeikeium K411 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 7.750198865 7.780881442 7.604880557 7.417937682 7.991100512 7.87757158 7.700673111 7.785139356 82409884 rubisco Carbon cycling Carbon fixation Nitrosospira multiformis ATCC 25196 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira;species:Nitrosospira multiformis; 7.8053106 7.576608713 7.456286536 7.421376485 7.553705701 8.017137058 7.648373622 7.620259971 7.64482026 209500810 cap virulence capsule Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.617394143 7.307965351 7.465623796 7.225180778 7.451978277 7.601017689 7.867143524 7.623092011 260630780 pstC Stress Phosphate limitation Jonquetella anthropi E3_33 E1 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Jonquetella;species:Jonquetella anthropi; 7.448008506 7.969874927 7.587800373 7.173641487 7.675647778 7.928779659 7.12435446 94309334 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 7.75862875 7.290853619 7.260619881 7.407930557 7.424576402 7.007453435 7.489482331 119876197 linB Organic Remediation Pesticides related compound Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 7.809308731 7.358247006 7.456187907 7.319478332 7.771767967 7.335953918 7.309903194 7.475987397 14600407 pstB Stress Phosphate limitation Aeropyrum pernix K1 6.746693284 6.794258739 6.832466707 152978806 ahpC Stress Oxygen stress Actinobacillus succinogenes 130Z superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus succinogenes; 7.659126506 7.638086015 7.798626527 8.091722038 7.090625862 7.528846367 7.219632786 7.861501864 55978135 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.708470632 7.758445276 7.46604562 7.642415527 7.514401591 7.672585991 7.172826041 7.389790111 76558214 alkK Organic Remediation Others Natronomonas pharaonis DSM 2160 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natronomonas;species:Natronomonas pharaonis; 7.601282383 7.237339082 6.849001989 7.493192435 119875893 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 7.703188795 7.748863244 7.204303134 7.561025006 8.312727322 8.350344314 8.395582439 8.225649737 104304133 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7.650295053 7.47620256 6.967841445 7.20823567 40740588 tfdA Organic Remediation Aromatics Chlorinated aromatics Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.590703676 7.720752098 7.229861317 7.282356858 7.01046214 7.448030345 7.085487829 7.193740367 145270616 pstA Stress Phosphate limitation Haemophilus influenzae PittHH 7.329741147 7.413098552 7.337253521 6.883350218 7.415053425 152975512 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bacillus cereus subsp. cytotoxis NVH 391-98 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cytotoxicus; 7.194543035 7.298259522 7.572894556 7.243047647 7.119803051 7.430478236 7.020957303 7.348300682 213953628 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Capnocytophaga sputigena Capno superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga sputigena; 7.096786292 7.003423273 6.955595224 7.115808645 71847851 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 8.424399528 8.368060751 7.710361133 8.272067842 8.076967067 8.241426589 7.699820839 7.850698261 8.192395192 145319680 MFS_antibiotic Antibiotic resistance transporter Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 7.536443095 7.461498302 7.582909807 7.325486068 7.378769888 7.934079463 7.88510325 7.962082913 7.814799338 84664994 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.779774662 7.939436427 7.952633114 7.067047582 7.905327104 7.789976909 7.465602503 91807170 nosZ Nitrogen Denitrification uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 7.293286301 7.147416108 7.775060484 7.583862762 7.365984011 7.889600839 7.442771553 7.625795776 7.658246945 227479916 SMR_antibiotics Antibiotic resistance transporter Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 8.105893253 8.274260803 8.097203486 7.073893334 8.340632118 7.877754809 7.89816318 7.759327253 7.980453813 161380684 atzB Organic Remediation Herbicides related compound Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 7.563914948 7.522765444 7.104198835 7.49550853 7.619352032 7.513994371 7.76924549 213951703 CopA Metal Resistance Copper Corynebacterium amycolatum SK46 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium amycolatum; 8.061602022 8.087181627 8.100181827 7.842005266 8.28016069 8.426374145 8.355004434 8.441810682 7.678084847 254948943 amyA Carbon cycling Carbon degradation Starch Dyadobacter fermentans DSM 18053 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 7.420139329 7.59799994 7.881526931 7.465834997 7.311783855 7.324867214 7.856639206 7.58383151 160891440 mannanase Carbon cycling Carbon degradation Hemicellulose Bacteroides uniformis ATCC 8492 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides uniformis; 7.559426476 7.466717254 7.151591261 7.192462372 7.169897043 7.664735283 7.412976509 7.374579214 7.388652549 227337438 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 7.508298981 7.353893586 7.292875549 7.019500073 7.274853039 7.486969957 26278694 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.918072457 8.238793684 8.077311028 7.762149933 8.378751 8.073079822 8.335652345 8.189362261 7.834171515 83951367 ChrA Metal Resistance Chromium Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 6.960983417 7.244418289 7.070075536 7.209669184 225083254 AceA Carbon cycling Carbon degradation others marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.056131729 7.836092089 7.641324783 7.625615291 7.970661023 7.923807528 8.217193313 7.783634394 8.149409716 170710380 pilin virulence pilin Clostridium perfringens B str. ATCC 3626 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium perfringens; 7.310190979 6.960330218 6.88802109 6.797323993 7.550948325 149927284 ahpC Stress Oxygen stress Limnobacter sp. MED105 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 6.884488244 6.925594686 7.014768277 6.723459806 7.304981226 91719516 CopA Metal Resistance Copper Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 7.416859004 7.474865677 7.220496652 6.911907566 7.09452238 78102043 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.226478074 7.229215839 7.351748524 46562153 type_III_secretion virulence secretion Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 7.431627686 7.539922959 7.556830701 8.093218976 7.565303145 7.82425708 7.680643795 7.738815177 7.929867548 192764400 narG Nitrogen Denitrification uncultured bacterium 7.528214087 7.378799672 7.338775722 7.129927961 7.274616472 7.743483407 7.529384009 7.311130422 7.556944048 194366947 pilin virulence pilin Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 7.225711279 7.187994682 7.184909409 6.948755914 6.916364838 7.815727359 17385484 narG Nitrogen Denitrification Paenibacillus sp. Lgg20.3 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.432373538 7.529945203 7.76368147 7.543074236 7.422400664 7.69479889 7.623874851 7.796471619 7.595086468 119672559 pimF Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 7.699469535 7.789043769 8.052923485 7.32659756 8.0266778 7.651810401 7.57266776 8.279725629 78518471 mmoX Carbon cycling Methane Methane oxidation Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.61451611 7.742944598 7.478583266 7.015752153 7.350196075 7.861774141 7.144078488 7.560791872 22417093 pnbA Organic Remediation Aromatics Nitoaromatics Sphingobium chlorophenolicum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 7.418025942 8.067556347 7.741517411 7.536127447 7.863950307 7.696334301 7.592644644 7.450294848 251845063 ahpF Stress Oxygen stress Paenibacillus sp. oral taxon 786 str. D14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 7.848042164 7.565200879 7.466009924 7.481516161 7.30813596 7.848198555 7.16234314 7.295193726 7.736737748 269136047 MFS_antibiotic Antibiotic resistance transporter Klebsiella variicola At-22 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella variicola; 7.221696893 7.154008748 6.778694647 6.908752958 7.594714613 256833295 pstC Stress Phosphate limitation Jonesia denitrificans DSM 20603 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 7.974563114 7.884838556 8.255300414 7.628514071 7.784347924 7.882800599 8.039909956 89097078 AceA Carbon cycling Carbon degradation others Bacillus sp. NRRL B-14911 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.644510921 7.449968725 8.022658047 7.857632282 7.89239538 7.727788158 7.597814323 7.591672225 152987941 B_lactamase_C Antibiotic resistance Beta-lactamases Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 8.060845038 7.806189502 7.595086343 7.71020467 8.011060986 8.264331316 8.099191519 7.852456135 7.805558445 215413726 pcc Carbon cycling Carbon fixation Mycobacterium tuberculosis 94_M4241A superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 7.333641356 7.540914453 5359702 sigma_24 Stress Sigma factors Synechococcus sp. PCC 7002 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.726495947 7.643059628 7.359009727 7.412135728 7.510077313 7.730577426 7.454081168 7.28970305 7.441570259 118424448 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.138790943 7.437069766 7.31228789 7.140355618 7.863214583 7.373385795 7.518639646 261877634 ctsR Stress Protein stress Selenomonas noxia ATCC 43541 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas noxia; 7.492010345 7.490665922 6.831536775 6.969065277 7.642533615 7.047010433 6.947161013 157373502 cytochrome Energy process Energy process Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 7.266509074 7.288785333 7.152520719 6.90701857 7.529430775 54026557 sigma_24 Stress Sigma factors Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 7.244671992 7.592068624 7.407742289 6.975221193 7.057040739 261404629 ara Carbon cycling Carbon degradation Hemicellulose Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.220855429 7.397887859 151939405 cydB Stress Oxygen limitation Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 6.512222425 7.227956477 139003068 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.336560019 7.186573544 163761484 pimF Organic Remediation Aromatics Aromatic carboxylic acid Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 7.711513015 7.765624744 7.519487387 7.388978743 7.42834104 7.712914915 7.506995189 7.458427771 151281379 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 7.89974713 7.72113134 8.032447635 7.746143498 8.455998022 8.195127388 8.2854397 7.923253348 8.101360542 114539951 ppx Phosphorus Phosphorus utilization Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 7.423436645 6.953370523 7.772400799 7.198645171 7.577756488 182633305 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 7.82105557 7.551425749 9.041931552 8.649570804 8.1289389 8.260455401 8.437294177 8.685880027 126627231 aclB Carbon cycling Carbon fixation Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 7.233544497 7.337341289 7.299993315 7.386159029 7.318540948 7.005690754 7.389037026 7.554918039 76666791 narI Stress Oxygen limitation uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.449813222 7.461000663 7.376651944 7.100571296 7.192757091 7.605779754 7.255175405 7.466793609 147847720 SmtA Metal Resistance Miscellaneous Synechococcus sp. WH 7803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.048595576 7.831526701 7.851135879 7.675787354 7.855698741 8.027293572 7.738446156 7.692770906 255335207 pstA Stress Phosphate limitation Hyphomicrobium denitrificans ATCC 51888 7.951513807 7.929016062 8.12781806 7.487931775 7.920231816 7.669866302 7.972856427 8.128433341 7.579434643 256588234 sigma_70 Stress Sigma factors Cyanothece sp. PCC 8802 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.816819548 7.828698971 7.553979257 7.315338013 7.326487778 86606390 pstB Stress Phosphate limitation Synechococcus sp. JA-3-3Ab 6.90320849 7.208209273 83723754 Catechol Organic Remediation Aromatics Other aromatics Ralstonia solanacearum UW551 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 7.380329647 7.229782557 6.990311837 6.770610966 7.42968702 7.132556892 7.192893682 159141277 nirK Nitrogen Denitrification Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.253427239 7.334886149 7.461053867 7.275497057 7.388185749 7.658821054 7.361987698 7.35367428 7.470741513 163795613 pnbA Organic Remediation Aromatics Nitoaromatics alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 7.328238738 7.129134822 7.135209662 94471147 narG Nitrogen Denitrification uncultured bacterium 7.529654804 7.776545825 7.491380219 7.299873849 7.196532903 7.547354826 7.404667779 7.551138275 7.645471503 116099775 pstB Stress Phosphate limitation Lactobacillus brevis ATCC 367 7.072706447 7.357542197 7.419531061 6.680303191 7.391864253 7.579203137 7.336954983 7.117370745 7.422999442 84780235 ppx Phosphorus Phosphorus utilization Sodalis glossinidius str. 'morsitans' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Sodalis;species:Sodalis glossinidius; 7.081755289 7.191872155 7.354172835 7.430925232 8.059246899 7.147177882 7.078814899 260938925 proX Stress Osmotic stress Vibrio orientalis CIP 102891 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 7.464293433 7.374323597 83316908 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.222109403 7.363459905 7.496418179 7.660422941 7.676281406 7.391835178 7.331023136 7.422490221 15140252 rubisco Carbon cycling Carbon fixation Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 7.40312981 7.262639867 7.475113628 7.431059016 7.642844085 7.481311181 7.387750373 254951474 grpE Stress Heat shock Dyadobacter fermentans DSM 18053 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 7.097562065 6.826501765 6.921756515 6.610442408 7.338257597 258633979 amyA Carbon cycling Carbon degradation Starch Pantoea sp. At-9b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 7.559456356 7.309791722 7.328061018 7.241561159 7.395608582 7.680798168 7.607101737 7.535017201 7.415180173 256487070 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.317802829 7.063136591 7.047309181 31071471 gyrB other category gyrB Anabaena planctonica superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Dolichospermum; 7.292636096 7.195235851 6.905689587 7.067307439 7.716209917 7.033979294 7.070604462 158307943 sigma_70 Stress Sigma factors Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;genus:Acaryochloris;species:Acaryochloris marina; 7.329585742 6.875869609 213927096 Arylest Organic Remediation Aromatics Other aromatics Pseudomonas syringae pv. tomato T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 7.36064296 7.363862972 7.488869457 6.898159356 7.468844392 7.765475439 7.665948724 7.495868712 7.659853475 58040797 nahA Organic Remediation Aromatics Polycyclic aromatics Gluconobacter oxydans 621H 7.375686155 7.33678844 110588896 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.413950478 7.331784264 7.307536125 7.04047914 7.065162592 7.444786512 7.128801095 7.215222938 7.435749748 28271051 narI Stress Oxygen limitation Lactobacillus plantarum WCFS1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus plantarum; 7.013765209 7.159361949 7.523303969 7.039914402 7.124081804 7.801384407 7.365159904 7.187013696 7.491844609 15551711 gyrB other category gyrB Providencia alcalifaciens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia; 7.151077224 7.191682018 6.862017623 7.809443685 34017174 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.510834796 7.329589012 7.465930454 145047746 sox Sulphur Sulphur oxidation Polynucleobacter sp. QLW-P1DMWA-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 7.688604921 7.721970566 7.333329984 7.754844775 7.568433413 7.826986238 8.040522673 7.570947488 114796477 endolysin_glycosidase Bacteria phage LYSIS Bacteriophage LKA1 order:Caudovirales;family:Podoviridae;genus:phiKMV-like viruses; 10.06038269 9.733179035 9.538557216 145237748 hdnO Organic Remediation Aromatics Heterocyclic aromatics Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.253560271 7.373611906 7.671796571 7.68486048 7.279106677 8.071152616 7.693568838 7.398617487 7.760774806 78044780 dsrA Sulphur sulfite reductase Carboxydothermus hydrogenoformans Z-2901 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Carboxydothermus;species:Carboxydothermus hydrogenoformans; 7.317261765 7.303099588 7.199823179 45936 ureC Nitrogen Ammonification Proteus vulgaris superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus; 7.428948014 7.700328517 7.967974078 7.942026475 7.256747326 7.309519102 7.536239205 8.350817637 87119426 ahpC Stress Oxygen stress Marinomonas sp. MED121 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 6.969606959 6.974255012 239592324 endochitinase Carbon cycling Carbon degradation Chitin Ajellomyces dermatitidis SLH14081 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 7.100670612 6.97961572 7.520371539 7.194871037 6.656887876 7.633713359 7.126379541 7.460949733 56314320 ArsC Metal Resistance Arsenic Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 7.84740667 7.990872393 8.023895485 7.837310924 8.427533759 8.062611487 8.049944274 8.281765915 187736175 atzA Organic Remediation Herbicides related compound Akkermansia muciniphila ATCC BAA-835 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Akkermansia;species:Akkermansia muciniphila; 7.270166918 7.477953651 7.479239227 7.518441017 7.111400935 7.740718411 7.286951714 7.258197306 213536807 exoglucanase Carbon cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.621709765 7.307184321 7.101641165 7.278593231 7.212295794 7.193385028 7.201931881 119455445 phenol_oxidase Carbon cycling Carbon degradation Lignin Lyngbya sp. PCC 8106 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Lyngbya; 7.19417667 7.267872659 7.281190417 7.573112813 7.477320322 7.701657652 7.430930207 7.344665234 193873617 cumC Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 7.692683582 7.891760381 7.536896718 7.835126944 7.851729382 8.011345697 7.787054397 7.465644332 7.165839335 139003484 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.521489532 7.522558881 7.391584888 7.216252293 6.97168631 7.725970618 7.359844606 6.95101504 88791015 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 7.921976206 7.90204815 7.98599487 8.120886318 8.183302971 8.017400623 8.041992218 7.84670343 7.864901994 76557247 pimF Organic Remediation Aromatics Aromatic carboxylic acid Natronomonas pharaonis DSM 2160 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natronomonas;species:Natronomonas pharaonis; 7.279068586 7.116007392 115254126 fnr Stress Oxygen stress Rhizobium leguminosarum bv. viciae 3841 7.505433468 7.531474412 7.34062842 6.985926645 7.268445192 7.746104093 7.326412674 7.215232756 7.417177574 149376961 sigma_24 Stress Sigma factors Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 7.288972021 7.350933975 7.385540776 7.037185596 7.466080877 183984989 akbF Organic Remediation Aromatics BTEX and related aromatics Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 8.07595214 7.603675691 7.836825679 7.847535472 7.860100786 7.945904872 7.973166964 7.455385531 226310381 desR Stress Cold shock Brevibacillus brevis NBRC 100599 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus brevis; 7.533416751 7.754171416 7.79647757 6.816234091 6.966267821 7.648625185 7.278854353 7.514152136 7.375902916 93354183 dehH109 Organic Remediation Chlorinated solvents Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 7.164786336 7.199571358 6.819149243 7.347673709 7.129562461 6.830274584 119949047 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 7.923106149 8.096404852 7.896583372 7.33074725 8.128193954 7.545037474 7.954198697 8.163579459 7.866321579 114337940 pimF Organic Remediation Aromatics Aromatic carboxylic acid Syntrophomonas wolfei subsp. wolfei str. Goettingen superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Syntrophomonadaceae;genus:Syntrophomonas;species:Syntrophomonas wolfei; 7.325077215 6.964937791 7.021210332 6.880734319 7.285489928 110648412 pimF Organic Remediation Aromatics Aromatic carboxylic acid Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 7.867695991 7.36761274 7.529432833 7.932745955 7.773963715 7.840081501 7.590915461 116629658 FTHFS Carbon cycling Acetogenesis Lactobacillus gasseri ATCC 33323 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus gasseri; 7.191489772 7.21948508 7.059390088 237750581 cap virulence capsule Helicobacter bilis ATCC 43879 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter bilis; 7.555207174 7.558626006 7.63186556 7.40845331 7.826079972 7.652238837 7.848139153 7.981756544 8.183328769 167778182 alkK Organic Remediation Others Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira biflexa; 7.20283494 7.107247054 23304330 mnp Carbon cycling Carbon degradation Lignin Heterobasidion insulare superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Russulales;family:Bondarzewiaceae;genus:Heterobasidion; 7.419129992 7.691883647 7.424454942 6.963614481 6.981139859 7.379259629 7.306705336 7.587856759 124515573 formate_hydrogenlyase_complex Bioleaching Carbon fixation Leptospirillum sp. Group II UBA 8.890526138 8.854880621 8.644425171 8.648540271 9.095492604 9.163271703 8.596635443 8.442024218 8.52805526 126180217 pstA Stress Phosphate limitation Methanoculleus marisnigri JR1 7.359269271 7.671300529 7.730049946 7.143891837 7.476692469 7.919560935 7.444657268 7.283979681 7.44281207 167069184 linB Organic Remediation Pesticides related compound Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.261416881 8.577754369 8.071476303 8.199428134 8.334804868 8.081131709 8.232834669 8.255831256 8.153278631 99030561 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 7.488926253 7.576165641 7.663974612 7.719676141 7.328709472 7.526200301 170113918 pimF Organic Remediation Aromatics Aromatic carboxylic acid Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 7.755819039 7.964186075 7.419701558 7.852094371 7.502516841 7.945510528 7.662717043 7.598511637 7.417132574 196206282 gyrB other category gyrB Cyanothece sp. PCC 8802 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.984795594 7.837144428 7.892583346 7.277982221 7.742784174 7.963618061 8.046908654 7.5255303 7.985611394 83972416 nosZ Nitrogen Denitrification uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 7.416252733 7.188981464 7.183893908 7.082567093 6.993774943 7.481017757 113935152 pcaG Organic Remediation Aromatics Other aromatics Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 7.509280588 7.49114202 7.23901307 189336037 HBH Organic Remediation Aromatics BTEX and related aromatics Burkholderia multivorans ATCC 17616 7.853944478 7.70524121 7.407173794 7.891172184 7.926426894 8.055239205 7.626555148 7.638933405 7.816806279 152073452 pstA Stress Phosphate limitation Beggiatoa sp. PS 7.832079927 7.889151434 7.908870231 7.443772676 7.770668281 7.893523573 7.598098886 7.861881752 150400903 pstB Stress Phosphate limitation Methanococcus aeolicus Nankai-3 7.443109054 6.987685749 7.195129492 6.864671378 7.564501301 254514190 pstS Stress Phosphate limitation gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.631166136 7.796716072 7.720776081 7.557324713 7.961977785 7.858042987 7.97018753 7.716551239 8.143382329 146403584 glycosyl_transferase_EPS Bioleaching EPS Acidiphilium cryptum JF-5 7.914344935 7.710499087 7.828413223 7.942388307 8.006875143 7.684940151 7.800178833 197697487 SMR_antibiotics Antibiotic resistance transporter Streptomyces sp. SPB74 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7.723848324 7.734550847 7.530172306 7.374930265 7.717293926 7.228713476 7.585715548 7.435907108 56695571 pimF Organic Remediation Aromatics Aromatic carboxylic acid Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 7.08970941 7.332842347 7.555171594 7.133958694 7.36581053 8.011835248 7.665507594 7.282821889 7.880608447 157406982 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 7.718685772 7.595398676 7.367463631 7.22731527 7.550678758 7.590149667 7.616518039 7.221032812 7.631564139 145234077 nagI Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.758507618 7.372615963 7.50000923 7.563139638 7.438799751 7.467880719 7.18862177 149357950 pilin virulence pilin Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 7.47750417 7.514799272 7.291095176 214044676 ppk Phosphorus Phosphorus utilization Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.278215412 7.426439059 7.617792066 7.58188789 7.779815459 7.89379367 8.585261476 118655010 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Burkholderia cenocepacia MC0-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 7.11758497 7.068101371 33391347 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.801516924 7.661958604 7.621020552 7.176397107 7.432352607 7.708869157 7.472111117 7.284502731 7.252735132 92113603 pstB Stress Phosphate limitation Chromohalobacter salexigens DSM 3043 7.752877384 7.819578019 7.501639975 7.667639043 7.327305006 7.917895344 7.296838735 7.701426699 7.396004164 157319379 fnr Stress Oxygen stress Shewanella sediminis HAW-EB3 6.935048667 7.089265738 6.888179514 198264909 hrcA Stress Heat shock Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 7.846885884 7.680967833 7.814599457 7.233704428 7.914248802 7.621356222 7.754447993 7.629208622 7.395737692 109625739 trzA Organic Remediation Herbicides related compound Haloquadratum walsbyi DSM 16790 7.882002475 7.875691244 7.75828171 7.951735242 8.008957494 7.992764066 8.035189458 8.711403902 8.725579272 1255496 nifH Nitrogen Nitrogen fixation unidentified bacterium superkingdom:Bacteria; 7.844644164 7.653966799 219549369 Arylest Organic Remediation Aromatics Other aromatics Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.210156008 7.080872308 89902276 fnr Stress Oxygen stress Rhodoferax ferrireducens T118 7.88034388 7.665998899 7.506898127 7.25825016 7.871774439 7.937631026 7.799714625 7.875063798 2627152 catechol_B Organic Remediation Aromatics Other aromatics Acinetobacter sp. YAA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 7.770484216 7.534721351 7.288749824 7.155187958 7.524937575 7.723281123 8.072154216 7.784361689 258530271 SMR_antibiotics Antibiotic resistance transporter Dickeya dadantii Ech586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 6.976899669 7.107459731 7.629431186 7.607389147 7.187409638 7.681527669 7.737339724 7.681425207 7.656502068 260891963 narI Stress Oxygen limitation Ammonifex degensii KC4 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Ammonifex;species:Ammonifex degensii; 7.824664868 7.811183549 7.952736853 7.695870245 7.486901193 8.23627771 7.895184937 7.807771901 8.009877739 71023769 nagG Organic Remediation Aromatics Aromatic carboxylic acid Ustilago maydis 521 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Ustilaginomycetes;order:Ustilaginales;family:Ustilaginaceae;genus:Ustilago;species:Ustilago maydis; 7.54822498 7.508447457 7.738471621 7.549288649 7.777189779 7.797787337 7.912557794 7.77831384 114569533 nitA Organic Remediation Aromatics Other aromatics Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 7.162048463 7.073640343 7.322944054 7.015735957 7.399791723 134136436 linB Organic Remediation Pesticides related compound Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 7.523965211 7.170351441 7.177328646 7.373420935 7.596972918 7.544819901 7.320320081 39997514 hydrogenase Energy process Energy process Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 8.018535379 7.805450975 7.630456198 7.86887885 7.833300349 7.907752165 7.549816556 7.819875936 7.466020194 166086949 pstB Stress Phosphate limitation Microcystis aeruginosa NIES-843 7.122364212 7.152851026 6.91510582 6.633941738 7.56312061 49530617 trzN Organic Remediation Herbicides related compound Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 7.642825248 7.561540171 7.551887878 7.657275095 7.881657406 7.93144204 7.886451886 7.683020247 7.772589779 71736846 endochitinase Carbon cycling Carbon degradation Chitin Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 7.297561008 7.46406307 7.889822041 7.473224176 7.915374631 7.819077143 7.954194501 8.097141131 8.012543049 193225470 pimF Organic Remediation Aromatics Aromatic carboxylic acid Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 8.452870297 8.096148499 8.049559461 8.012349072 8.478615764 8.256954412 8.302514082 8.337329042 8.391570259 221563260 cytochrome Energy process Energy process Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 7.238348143 6.953652777 7.205933389 158522680 dsrB Sulphur sulfite reductase Candidatus Desulfococcus oleovorans Hxd3 7.491323146 7.613534916 7.795135593 7.963766061 7.729013603 7.885391426 7.92181769 7.980754415 7.849535817 27349178 pcaG Organic Remediation Aromatics Other aromatics Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.029054531 7.942544286 7.625528111 7.531651613 7.994970652 8.05160939 7.914769878 7.764267362 7.839064484 209912715 pap virulence adhesin Escherichia coli SE11 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 7.236243739 7.218370063 7.442583651 7.278611931 7.0916937 7.058378852 7.08880767 7.195894554 112463041 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.612956482 7.436009719 7.456529717 7.38098525 7.498364216 7.729982096 7.552096013 7.211289785 7.617557857 187477440 pstS Stress Phosphate limitation Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 8.219243753 8.064954232 7.914678645 8.208234159 8.195203339 8.303280399 7.962764525 8.179095695 8.210943329 110287060 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 7.668962477 7.604503869 7.20281685 7.384921364 7.853369789 7.988012673 7.894558914 7.613686848 7.628225721 84686221 atzB Organic Remediation Herbicides related compound Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.565409835 7.509834638 7.393281461 7.432000399 7.029664707 7.29699622 7.371872274 7.005236183 266623751 pstA Stress Phosphate limitation Clostridium hathewayi DSM 13479 6.896104393 6.717819324 109454171 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 7.65972043 7.780512491 7.348741738 7.212969925 7.981706504 7.464342817 7.640089556 7.657751079 113727563 nagG Organic Remediation Aromatics Aromatic carboxylic acid Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 6.960313813 7.359301973 7.364285877 7.039582021 6.77349406 7.709932437 7.109899398 7.684674416 156057995 nagG Organic Remediation Aromatics Aromatic carboxylic acid Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 7.190352284 7.141276662 7.135322022 6.855531417 6.823042776 7.537617138 7.211421194 7.740783976 146342566 SilA Metal Resistance Silver Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.416022783 7.939675655 8.048050654 8.117447797 7.858739509 8.096244597 8.116239754 8.658385896 40253074 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.422302548 8.054777512 7.820010756 7.509452623 7.357087765 7.500365714 240142885 sigma_70 Stress Sigma factors Methylobacterium extorquens AM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 7.708316929 7.813938491 7.766144754 7.624266403 8.111830227 8.091285136 8.009903209 7.784630238 7.853665601 190687341 pstC Stress Phosphate limitation Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 7.116097655 7.158748004 6.97103996 7.166957434 6.832855896 7.472473047 7.011109896 6.973599796 7.186865115 145622444 ChrA Metal Resistance Chromium Petrotoga mobilis SJ95 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Petrotoga;species:Petrotoga mobilis; 7.356415719 7.446547607 7.01952892 7.162235623 7.351095713 7.328915037 7.244934783 219678793 obgE Stress Radiation stress gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.15190776 7.261434906 7.463423519 7.552412165 7.480149253 112821387 Catechol Organic Remediation Aromatics Other aromatics Sphingomonas sp. KA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.056714461 7.802373441 7.615477798 7.604283326 7.701877577 7.722875165 7.065039273 7.392306447 58530652 gyrB other category gyrB Ferrimonas balearica superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Ferrimonadaceae;genus:Ferrimonas; 7.620487301 7.317820258 7.161701019 7.002877986 7.671464293 7.81675633 7.303818613 7.050878388 7.429022298 83631795 exochitinase Carbon cycling Carbon degradation Chitin Hahella chejuensis KCTC 2396 7.797826341 7.843560148 7.709598808 7.464003723 7.777287875 7.676647851 7.611481896 7.722144378 145224318 chnB Organic Remediation Other Hydrocarbons Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 7.358710762 7.207337012 7.187060653 7.077900671 7.360858422 7.519594907 34482879 pstS Stress Phosphate limitation Wolinella succinogenes superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Wolinella; 6.951428257 6.583582383 6.946847707 124495022 phenol_oxidase Carbon cycling Carbon degradation Lignin Polyporus brumalis superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Polyporus; 7.84281155 7.935150988 8.101207052 7.691339596 7.579837098 7.51584957 269120163 hly virulence hemolysin Sebaldella termitidis ATCC 33386 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteria;order:Fusobacteriales;family:Fusobacteriaceae;genus:Sebaldella;species:Sebaldella termitidis; 7.206135311 7.033587239 7.530137996 227947480 sigma_24 Stress Sigma factors Meiothermus ruber DSM 1279 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 7.234981415 7.509241942 7.448082292 7.024926737 6.715854068 7.878321313 7.312408973 6.935292539 7.096482734 15896693 xylanase Carbon cycling Carbon degradation Hemicellulose Clostridium acetobutylicum ATCC 824 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium acetobutylicum; 7.697169258 7.103557816 6.8409094 6.876729086 196157750 mer Metal Resistance Mercury Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 8.161750308 7.413806975 7.730465962 7.727286864 71554742 czcC Metal Resistance "Cadmium,Cobalt,Zinc" Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 7.454593086 7.522891559 7.509748869 7.217160645 7.735609913 7.385005477 7.415641057 7.266227696 33391327 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.977296999 7.617841239 7.440623457 7.464438553 7.339575946 7.391754394 7.445540518 7.168081684 154152895 glnA Stress Nitrogen limitation Fervidobacterium nodosum Rt17-B1 7.488111878 7.456866494 149129065 nrfA Nitrogen Dissimilatory N reduction Bacteroides caccae ATCC 43185 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides caccae; 7.199320171 7.185426471 7.25709353 6.95624289 7.396277051 7.581428647 7.299339048 7.467813134 144293 exoglucanase Carbon cycling Carbon degradation Cellulose "C.saccharolyticum beta-D-mannanase (manA) gene, complete cds.], gene product" superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Caldicellulosiruptor; 7.26842553 7.426673468 7.512635665 7.20070945 7.168611763 68553308 dsrA Sulphur sulfite reductase Prosthecochloris aestuarii DSM 271 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Prosthecochloris;species:Prosthecochloris aestuarii; 7.45115058 7.469578943 7.347317098 6.983811473 7.020718647 7.54196942 7.184544086 7.193363996 157316970 pcc Carbon cycling Carbon fixation Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 8.022438352 7.825068234 7.73766703 7.928807046 7.764276874 7.801601134 7.545360376 90201228 pcc Carbon cycling Carbon fixation Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 7.835930834 7.704318796 7.686577772 7.590415237 8.026177202 81428494 sigma_70 Stress Sigma factors Lactobacillus sakei subsp. sakei 23K superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus sakei; 7.145809532 7.430304012 46912345 ppx Phosphorus Phosphorus utilization Photobacterium profundum SS9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 6.996363077 6.996346588 6.986728373 7.05575535 7.083554057 133737343 ChrA Metal Resistance Chromium Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 7.582552592 7.293081626 7.523951243 7.512603589 7.095331969 7.241849142 7.270437243 4583559 oxyR Stress Oxygen stress Erwinia chrysanthemi superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya; 7.050411928 6.822665102 60476308 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.550129382 7.648080151 7.539661543 6.944769377 7.582572219 7.416291759 217807 amyA Carbon cycling Carbon degradation Starch Aspergillus shirousami superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 7.60409582 6.979785694 40253093 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.415418077 8.007369336 7.845165982 7.944588221 8.281250894 7.898925915 8.120845578 8.208703314 8.004985854 190151266 xylA Carbon cycling Carbon degradation Hemicellulose Actinobacillus pleuropneumoniae serovar 7 str. AP76 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus pleuropneumoniae; 7.141809092 7.271683177 66391842 clamp_loader_T4_ATPase Bacteria phage REPLICATION Aeromonas phage 31 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.187261124 7.177198229 7.109536523 114307278 pstA Stress Phosphate limitation Nitrosomonas eutropha C91 7.61554951 7.130123694 7.318749163 6.920428022 7.690765679 218718868 MFS_antibiotic Antibiotic resistance transporter Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 7.842268826 7.916692842 7.499024313 7.583784711 7.950838946 7.953767599 8.139714311 8.158202788 153008102 phoB Stress Phosphate limitation Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 7.47641782 6.994227824 146340995 ureC Nitrogen Ammonification Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.324934109 7.644373018 7.539495567 7.391695909 7.43281565 7.608043972 7.078949613 7.253003422 6.943507075 124496940 ChrA Metal Resistance Chromium Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 7.786782664 7.59526569 7.186131454 7.912365635 7.59550183 7.26109289 7.235883416 257467207 sigma_70 Stress Sigma factors Fusobacterium gonidiaformans ATCC 25563 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteria;order:Fusobacteriales;family:Fusobacteriaceae;genus:Fusobacterium;species:Fusobacterium gonidiaformans; 6.898464099 6.930879359 7.084608234 281403485 sigma_24 Stress Sigma factors Prevotella copri DSM 18205 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella copri; 7.317387444 6.777623268 7.082198583 7.019159063 6.90036773 7.302097743 7.212717022 7.334341934 21673693 APS_AprB Sulphur adenylylsulfate reductase Chlorobium tepidum TLS superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 7.045414444 7.17102622 7.626883485 6.92771941 7.29013738 146279914 sox Sulphur Sulphur oxidation Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 7.868536854 7.860704529 7.566608485 7.47721329 211961186 bphA Organic Remediation Aromatics Polycyclic aromatics Pseudovibrio sp. JE062 7.327232982 7.285356504 7.245061944 7.434990269 124898689 endochitinase Carbon cycling Carbon degradation Chitin Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 7.985495402 8.173657384 7.897934321 7.159676568 7.900265241 7.880686272 7.84537117 160938706 atzA Organic Remediation Herbicides related compound Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 7.171825416 7.451327602 7.514671781 7.375920302 7.133737433 7.241054313 7.115152346 7.176123916 242822416 MFS_antibiotic Antibiotic resistance transporter Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 7.779355815 7.579008996 7.272904332 7.595924324 7.181432278 7.758477285 7.493522921 7.50966433 7.201249962 163852150 BchY other category chlorophyllide reductase Methylobacterium extorquens PA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 8.205756855 7.641170652 7.703006146 7.857862567 7.817583253 7.86619766 7.936494526 8.024848211 7.313118974 147668928 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. BAV1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.656002812 7.542411764 7.309417768 7.055779534 7.446814925 7.774963092 7.209752782 7.331613191 7.443756717 62512281 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.510014165 7.505539184 154362266 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.268728394 7.214708571 114571197 pimF Organic Remediation Aromatics Aromatic carboxylic acid Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 7.544640849 7.581444603 7.521550406 7.225147916 7.761537578 7.555478675 7.489329024 7.674843826 7.600942557 15888914 fnr Stress Oxygen stress Agrobacterium tumefaciens str. C58 7.709775092 7.85430593 7.110382046 7.308276637 7.650237944 7.535452704 7.257702434 7.243393435 7.371653124 15077471 dsrA Sulphur sulfite reductase Desulfovirga adipica superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Desulfovirga; 7.466565665 8.016880485 7.878029611 7.532715648 7.974352722 7.734096897 7.959140496 7.961958849 8.007330207 13473199 pstB Stress Phosphate limitation Mesorhizobium loti MAFF303099 7.488286236 7.455670628 7.637931798 7.149757938 7.171800984 7.614049078 7.333178127 7.296853917 7.262430931 260430660 pstC Stress Phosphate limitation Silicibacter lacuscaerulensis ITI-1157 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria lacuscaerulensis; 7.614548797 7.491961911 7.664727198 7.541062846 7.906495713 7.970385162 7.503336331 7.868053504 214045360 Tet Antibiotic resistance other Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.278258586 8.148971699 8.044914289 7.653036668 7.990218094 7.830188792 7.865224499 7.831384674 7.435676308 126105539 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.03871349 7.25487049 7.158145113 7.841844007 7.151846387 7.143902488 7.349321668 150837977 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Marinomonas sp. MWYL1 7.460288865 7.290662936 7.31708322 7.18362624 6.90942175 163791643 ctsR Stress Protein stress Carnobacterium sp. AT7 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Carnobacteriaceae;genus:Carnobacterium; 9.123541907 8.890101085 8.672700485 9.131868344 9.067687226 8.631238033 8.813652794 8.489090529 8.662546794 146284245 cytochrome Energy process Energy process Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 7.844620465 8.038283568 134097518 hly virulence hemolysin Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 7.785162127 8.171925567 8.218675592 8.331237351 8.561461983 8.186563603 8.508476335 8.320179764 8.387108271 219666454 ctsR Stress Protein stress Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 7.627736323 7.601049639 7.682236098 7.119254695 7.472799821 7.311764825 7.219942262 209548603 fnr Stress Oxygen stress Rhizobium leguminosarum bv. trifolii WSM2304 7.69260041 8.32666807 8.086124316 7.435720093 8.192230554 7.567441678 237809491 fnr Stress Oxygen stress Tolumonas auensis DSM 9187 7.436974078 7.51357282 7.207181945 262221584 sigma_70 Stress Sigma factors Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;species:Grimontia hollisae; 7.59191415 7.144092933 7.102436513 6.828068957 6.623209746 7.173886329 6.988068077 7.003113627 7.320167343 219538851 dmsA Organic Remediation Others Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 8.929869524 8.689995039 8.778668399 8.561218044 8.681267903 147851113 sigma_70 Stress Sigma factors Synechococcus sp. RCC307 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.432064972 7.501708008 7.977302753 7.522693099 7.466424598 7.788450407 7.413242477 7.45752283 7.246660359 6778709 dsrA Sulphur sulfite reductase uncultured sulfate-reducer HMS-4 8.084285197 7.633576757 7.929523688 7.912731433 8.437687124 8.342024551 8.160565297 7.730326851 7.891974963 144943374 hydrogenase Energy process Energy process Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 7.607397919 7.334653102 7.486657001 7.209262696 7.128770058 7.227187532 7.29982497 218278955 dsrA Sulphur sulfite reductase Roseburia intestinalis L1-82 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia intestinalis; 7.50450493 7.174527028 7.521318899 7.021555556 7.644346579 7.182762849 7.146166762 7.304635289 119698459 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.053715608 7.229809565 7.114162806 6.871848786 7.55452814 6.993572442 7.044328846 167566679 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia oklahomensis EO147 7.680504643 7.782055326 7.757776787 7.197098162 7.472630557 7.739810815 7.463071838 7.484589792 7.672370174 110606536 amyA Carbon cycling Carbon degradation Starch Thermofilum pendens Hrk 5 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermofilaceae;genus:Thermofilum;species:Thermofilum pendens; 6.958440401 6.799980992 6.880862333 7.049596252 90020363 sigma_70 Stress Sigma factors Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 7.237218001 7.426723397 7.380463977 7.282971379 7.263262413 7.548051002 7.541171315 7.325872718 7.488310572 209907326 ArsC Metal Resistance Arsenic Enterobacter cancerogenus ATCC 35316 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 7.831103335 7.83201786 7.425768771 7.519494711 7.953198625 7.925531925 7.604144801 7.726114476 225643268 fnr Stress Oxygen stress Sulfurihydrogenibium azorense Az-Fu1 7.573303633 7.842077812 7.894800058 7.56081187 7.658665789 8.193099463 62512329 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 7.293921381 7.207897893 6.79041088 6.962967453 7.527335688 42781217 nbaC Organic Remediation Aromatics Nitoaromatics Bacillus cereus ATCC 10987 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 7.333425635 7.160442429 7.052468579 6.774309876 95116349 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.531712189 7.7907635 7.677145957 6.910636381 7.538155192 133737645 aoxB Metal Resistance Arsenic Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 6.962701784 7.010660138 7.134350635 6.906812384 6.882188741 114762610 ZntA Metal Resistance Zinc Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.542841057 7.237801272 7.173742758 7.1807202 7.489778318 28896794 amyA Carbon cycling Carbon degradation Starch Vibrio parahaemolyticus RIMD 2210633 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.26783079 7.131726505 7.233891312 6.916150065 7.363316597 7.196174795 7.040799307 149232706 mannanase Carbon cycling Carbon degradation Hemicellulose Pedobacter sp. BAL39 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter; 7.611204756 7.246118565 69300839 xylA Carbon cycling Carbon degradation Hemicellulose Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.647985552 7.71827522 7.246872495 50551739 ZntA Metal Resistance Zinc Yarrowia lipolytica superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Dipodascaceae;genus:Yarrowia;species:Yarrowia lipolytica; 7.229104316 7.46497237 260616760 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 7.32293831 7.484180672 7.448891841 6.889227608 7.466431025 116662310 cumA Organic Remediation Aromatics Other aromatics Arthrobacter sp. FB24 7.463792664 7.322328221 7.147278019 6.964425497 6.934021622 198264152 AceA Carbon cycling Carbon degradation others Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 7.722790737 7.825969165 8.093560615 7.532846176 7.874990686 7.991916227 7.780017194 7.798436949 7.735118451 87198907 AceB Carbon cycling Carbon degradation others Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 7.323573443 7.610127931 7.660867496 7.140355618 7.179306842 8.02115113 7.639477431 7.547647316 222102113 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.082452306 8.050769735 8.321735769 7.819733147 8.593201666 7.783151106 8.191701657 8.438785099 8.105272779 197287481 arcB Stress Oxygen limitation Proteus mirabilis HI4320 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 7.701663269 7.712975174 7.046803119 7.358400275 156572268 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.057010434 7.292149075 7.652893022 7.375959903 7.645773696 7.269836866 7.257577972 7.393006242 16126094 pimF Organic Remediation Aromatics Aromatic carboxylic acid Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 7.87959433 7.456538038 7.69931125 7.170977224 7.755694082 7.703968421 170748910 proV Stress Osmotic stress Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 7.680297903 7.634023927 7.233692598 7.346023086 7.320925814 7.660726518 7.34542805 7.421229589 7.476672516 158140438 sigma_24 Stress Sigma factors Alkaliphilus oremlandii OhILAs superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus oremlandii; 7.236425953 7.205705051 53717075 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia mallei ATCC 23344 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia mallei; 7.468057307 7.454972487 7.137500378 7.200878388 32895078 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 6.786993499 7.480750475 6.783702616 7.508622286 190572690 SMR_antibiotics Antibiotic resistance transporter Stenotrophomonas maltophilia K279a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 7.595293071 7.575125388 7.448973196 7.298553072 7.378106435 85722740 TerC Metal Resistance Tellurium Syntrophus aciditrophicus SB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Syntrophus;species:Syntrophus aciditrophicus; 6.884721645 6.800794068 7.189083687 6.929652503 6.496632179 7.363174898 146191579 exaA Organic Remediation Chlorinated solvents Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.218055601 8.149091759 7.766708763 8.283488571 8.037114219 8.280960342 8.157684832 8.093476469 7.626465096 108765661 pcaG Organic Remediation Aromatics Other aromatics Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 8.316167949 8.026827883 8.13129269 7.468797231 8.113551916 7.949374102 8.026586401 8.044714668 7.720487309 257386281 cda Carbon cycling Carbon degradation Starch Halomicrobium mukohataei DSM 12286 7.884844439 7.764719545 7.634088784 7.581807631 8.131407763 8.147758683 8.348673291 8.395072157 8.418081068 77382287 glnA Stress Nitrogen limitation Pseudomonas fluorescens Pf0-1 7.57358201 7.65236239 7.425714864 7.100854213 7.644782014 7.762459546 7.487615869 7.028312361 7.392095099 121603818 hrcA Stress Heat shock Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8.018592096 7.872187981 8.03660361 7.264426375 7.979722592 7.726076369 7.870679511 8.029320169 7.899024226 139003331 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.307310706 7.019231703 7.257505368 6.994189437 7.504990344 212542743 BpH Organic Remediation Aromatics Aromatic carboxylic acid Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.832948872 7.654186606 7.250387487 7.34412193 7.657118263 7.72745573 7.690959028 7.631687809 7.873976694 3172264 major_capsid_protein Bacteria phage STRUCTURAL Mycobacterium phage D29 order:Caudovirales;family:Siphoviridae;genus:L5-like viruses; 8.184030526 7.9808664 8.036576009 8.032527553 8.202411459 7.778546899 8.150451788 66219969 AceB Carbon cycling Carbon degradation others Rhodothermus marinus superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Rhodothermus; 7.854332896 8.228831441 7.967753495 7.476722059 8.064742115 7.992174003 7.83613183 7.993084464 7.863047528 212680196 gdh Nitrogen Ammonification Providencia rustigianii DSM 4541 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 7.162071017 6.986632764 52548186 lip Carbon cycling Carbon degradation Lignin Phanerochaete chrysosporium 7.749718749 7.951412089 7.878146304 7.890232717 8.039406582 8.026470382 7.86214637 7.964085196 7.557705047 108803052 catechol_B Organic Remediation Aromatics Other aromatics Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 7.914462858 7.528010237 7.549820985 7.258816122 7.506333037 7.786908719 7.330831842 7.243282071 7.299512391 76882421 pstC Stress Phosphate limitation Nitrosococcus oceani ATCC 19707 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 7.947102492 7.929413305 7.7913788 7.705774634 7.90051043 7.830577936 8.224541825 7.746174192 7.752334987 78693666 proO Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. BTAi1 8.240788353 8.092674246 7.85927178 7.779079946 7.885619207 7.916053048 7.910117463 7.864324576 120587423 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 7.28026048 7.115748411 6.860012371 6.892165677 7.389407356 92393560 TerZ Metal Resistance Tellurium Psychrobacter cryohalolentis K5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter cryohalolentis; 7.488508316 7.376212784 7.316877775 7.137983981 6.990616277 7.904675593 7.365732855 7.25750739 7.477007794 88643139 dsrB Sulphur sulfite reductase uncultured prokaryote 7.112455836 7.260437195 7.194837246 6.613171699 6.688615213 7.490568601 85709368 B_lactamase_A Antibiotic resistance Beta-lactamases Erythrobacter sp. NAP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 7.851651714 7.7322943 7.475406167 7.48198416 7.999004699 7.874320065 7.782245829 7.696893393 7.692325311 118431474 pimF Organic Remediation Aromatics Aromatic carboxylic acid Aeropyrum pernix K1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Aeropyrum;species:Aeropyrum pernix; 7.460411898 7.562216867 7.601729858 7.008005101 7.235775957 12659182 nifH Nitrogen Nitrogen fixation Spirochaeta zuelzerae superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta; 7.706828762 7.751469846 7.227990749 7.768542438 110285898 HBH Organic Remediation Aromatics BTEX and related aromatics Mesorhizobium sp. BNC1 7.330597168 7.533112469 7.494725933 7.577111374 7.234956155 7.794253463 7.585249373 7.639720375 7.461394288 115523774 AceB Carbon cycling Carbon degradation others Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.89181467 7.868387852 7.771263446 7.34241598 8.148556169 7.801770411 7.915104974 7.938245816 7.757676428 15922765 ferredoxin_oxidoreductase Bioleaching Electron transport Sulfolobus tokodaii str. 7 6.897773293 6.893775153 6.967023416 62946412 hly virulence hemolysin Nostoc sp. PCC 7120 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc; 7.220050429 7.251499462 7.13419208 7.092285768 7.304634814 62825547 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.554090296 7.339512686 7.438925942 7.373923667 7.164161676 7.708217684 7.334405002 7.356817955 7.583210011 75674705 pstC Stress Phosphate limitation Nitrobacter winogradskyi Nb-255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 8.229138231 8.335842941 8.12868883 7.875509059 8.396503773 8.293811933 8.475606864 8.315398964 8.337457409 218441281 CopA Metal Resistance Copper Cyanothece sp. PCC 7424 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.27379525 6.985682103 7.42211763 6.870087361 7.16448804 7.681890533 7.402810339 7.23915286 7.784553876 115395214 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.426740076 7.440093396 7.007215549 6.905572306 7.455940851 220908355 clpC Stress Protein stress Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.180362993 7.245388004 7.079666663 7.3731066 6.950482466 7.01587725 32445957 alkK Organic Remediation Others Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 7.700476619 7.729485058 7.522498513 7.308839153 7.534911275 7.672699776 7.283136396 7.46929981 7.343692827 258638716 hly virulence hemolysin Pantoea sp. At-9b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 7.602304907 7.600386102 7.722400311 7.364643918 7.083545134 7.913548509 160866551 dmsA Organic Remediation Others "Salmonella enterica subsp. arizonae serovar 62:z4,z23:--" superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 8.012152205 8.074342203 7.919431225 8.084811332 8.102038004 8.339573077 8.298990245 8.501303796 8.263707172 223893260 Tet Antibiotic resistance other bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 7.308251084 7.304394552 7.185819002 6.678828279 7.200631678 7.449590527 7.237756549 7.4811418 46906230 gyrB other category gyrB Listeria monocytogenes str. 4b F2365 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria monocytogenes; 7.147742174 7.195969214 7.257778419 6.816090222 7.522930904 7.172447354 7.27912438 118424356 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.293723134 7.282819346 7.091767492 6.537226298 7.461781052 7.242047294 6.908937526 7.288521408 83316810 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.851415004 8.200195272 8.136607882 7.598267659 8.003233 7.742130943 7.813953093 7.87231696 7.841768738 88865978 pimF Organic Remediation Aromatics Aromatic carboxylic acid Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 8.059543764 7.771024609 7.866207846 7.796693828 7.769152265 7.995736892 8.042463491 8.057817025 7.584809723 39578117 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.276385677 7.487749639 7.144194843 7.441868746 7.444760984 7.858993799 7.349787124 7.129495271 227198090 pcc Carbon cycling Carbon fixation Corynebacterium striatum ATCC 6940 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium striatum; 7.84117391 7.73063019 7.47683445 7.778841897 7.953966941 7.928963633 7.959257073 7.848820073 7.765982451 206676408 HBH Organic Remediation Aromatics BTEX and related aromatics Rhodobacterales bacterium HTCC2083 8.87123482 8.828969288 8.857482215 iegHydrogenase29 hydrogenase Energy process Energy process 7.665730632 7.485693076 7.19937727 7.374290462 7.07209014 7.674864413 7.189212651 7.070831341 152030070 linB Organic Remediation Pesticides related compound Anaeromyxobacter sp. Fw109-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 7.987102584 7.71628442 7.320125735 7.801419738 7.807869725 7.716298772 7.473154063 7.498183293 7.433876784 52631740 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.833730348 8.115470392 7.997576981 8.214475285 8.574292716 8.347406208 7.925210139 8.045654504 77953219 pcc Carbon cycling Carbon fixation Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 8.093300854 7.944680998 7.903065938 6.920546353 7.35151697 7.632175674 7.475966051 7.853511107 7.464925503 94471005 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.607543558 7.423471065 7.419776542 7.024803442 7.238479647 7.162495511 7.151046447 39647626 phn Organic Remediation Herbicides related compound Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.881076753 7.778859934 7.809620518 7.959232397 8.024089217 8.011785454 7.776254949 7.704776889 7.614511087 15602601 dnaK Stress Heat shock Pasteurella multocida subsp. multocida str. Pm70 7.226565308 7.01656306 7.405667439 7.142535986 6.91281503 7.579194456 7.478399812 7.079199286 84391028 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 8.040111694 7.923652434 8.450844689 7.700045804 8.587750641 8.165512602 8.492269086 8.019606924 126627073 ArsC Metal Resistance Arsenic Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 7.569251201 7.420830355 7.163233087 7.622014206 7.27027168 7.823607173 7.304684207 7.714547139 227511127 pstC Stress Phosphate limitation Lactobacillus buchneri ATCC 11577 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus buchneri; 7.189172597 7.281066736 7.038495069 6.94144821 7.240696587 7.135377109 7.228318663 7.445378888 256831164 pstB Stress Phosphate limitation Desulfomicrobium baculatum DSM 4028 7.740167813 7.54601675 7.548420549 7.186393491 7.425235404 7.872730349 7.602092422 7.463948746 7.688314244 116061968 dsrA Sulphur sulfite reductase Desulfotomaculum sp. Srb55 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 7.64950392 7.295039725 7.290250243 7.819647193 7.512418319 7.614345741 198251329 mer Metal Resistance Mercury Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 8.544922127 7.634860651 7.416354259 7.463858737 7.481138247 8.073280319 7.804632108 7.468242971 56963424 dnaK Stress Heat shock Bacillus clausii KSM-K16 7.066794857 7.388972181 7.626759912 7.246964788 7.505281634 7.126924849 7.229150037 7.539600136 119951195 pheA Organic Remediation Aromatics Other aromatics Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 7.637178997 7.420771752 7.073350146 7.561319827 7.570804229 7.580051154 239626154 sigma_70 Stress Sigma factors Clostridiales bacterium 1_7_47_FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales; 7.258808992 7.280041309 7.822797374 7.486753161 7.284482254 7.793446643 7.014467267 7.459547379 150840583 atzC Organic Remediation Herbicides related compound Actinobacillus succinogenes 130Z superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus succinogenes; 7.507061139 7.460010985 7.054969368 6.819381367 7.017683127 121593647 CadA Metal Resistance Cadmium Acidovorax sp. JS42 8.183326115 7.533651073 7.59708336 7.781983226 7.972579481 7.645323918 7.492637869 7.972586716 73762806 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.043671918 8.043733483 7.797729675 7.469853031 8.05715226 8.018858276 7.665197659 7.948343516 103485790 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Sphingopyxis alaskensis RB2256 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 7.34240003 7.146631711 7.350102763 7.104755213 6.742970001 7.379879104 7.32248554 6.939300306 7.402850599 195970122 Arylest Organic Remediation Aromatics Other aromatics Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 8.215921436 7.940930545 7.673406993 7.79197534 7.539520162 17158746 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Nostoc sp. PCC 7120 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc; 7.007719692 7.991021529 7.423695435 7.964215993 8.047773981 7.915574505 7.83334293 118716014 nitA Organic Remediation Aromatics Other aromatics Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 7.942666868 8.130609182 7.800357128 7.732666949 8.03322084 8.013834904 7.964592329 7.759450698 7.980135852 39843363 B_lactamase Antibiotic resistance Beta-lactamases Pandoraea pnomenusa superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Pandoraea; 7.62526354 7.820328301 7.586632708 7.40279956 7.735540099 7.815939508 7.523679144 7.929372674 7.154231232 69289203 gyrB other category gyrB Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 7.82069114 7.904311747 7.878352769 7.852387332 8.197189235 7.854127314 7.990713849 254425121 glnA Stress Nitrogen limitation Synechococcus sp. PCC 7335 6.819149222 6.632813189 6.964511972 256792294 clpC Stress Protein stress Slackia heliotrinireducens DSM 20476 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Slackia;species:Slackia heliotrinireducens; 7.919699966 8.052746788 7.564588138 7.28972475 7.770212 7.688007103 7.573403887 7.800840365 7.461360568 71066022 CopA Metal Resistance Copper Psychrobacter arcticus 273-4 7.055919676 6.933549982 7.506938266 221194827 amyA Carbon cycling Carbon degradation Starch Atopobium rimae ATCC 49626 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Atopobium;species:Atopobium rimae; 7.542553258 7.425583392 7.070055736 7.376803331 7.403404899 7.272165128 7.031242254 7.368306285 239826729 glnR Stress Nitrogen limitation Geobacillus sp. WCH70 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.472640234 7.475491939 7.594225875 6.928131719 7.602722183 7.158766836 7.409448624 7.269403911 162072856 dsrB Sulphur sulfite reductase Thiocapsa marina superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa; 7.785618254 7.913334198 7.637475681 7.047293418 7.656542257 8.017275875 7.347018867 7.385668962 7.479167285 72002901 gyrB other category gyrB Prochlorococcus marinus str. NATL2A superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 7.148604965 7.494032868 7.470743415 6.720088095 7.469496336 7.293340598 7.344789031 146304668 H_transporting_two_sector_ATPase Bioleaching other category Metallosphaera sedula DSM 5348 7.330158363 7.17832833 196253162 CopA Metal Resistance Copper Clostridium thermocellum DSM 4150 7.463569301 7.245138103 7.469891019 6.923546529 7.060322325 7.45511667 7.323806757 7.015772389 123985213 pstB Stress Phosphate limitation Microscilla marina ATCC 23134 7.452934328 7.246117353 7.309052519 7.460912984 7.620510393 7.058296829 6.988944312 218289280 nplT Carbon cycling Carbon degradation Starch Alicyclobacillus acidocaldarius LAA1 7.705139921 7.886442202 8.085414745 8.164956376 7.244666167 8.542983021 7.622514493 7.851906591 7.674627994 218764401 fnr Stress Oxygen stress Desulfatibacillum alkenivorans AK-01 7.931509637 7.947148014 7.905177937 7.694991111 8.507701909 8.260601291 8.582195011 8.494472827 8.322289089 89346108 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 8.125752854 8.651545406 8.440697974 8.332307007 8.222724638 8.485072626 8.250458703 223470343 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 7.934224326 7.7460502 7.867638925 7.334614643 7.984376736 7.563021084 7.875688601 7.817692587 7.992768446 242122403 fnr Stress Oxygen stress Desulfovibrio salexigens DSM 2638 7.83011722 7.389597477 7.293607909 7.27313101 85698446 nreB Metal Resistance Nickel Nitrobacter sp. Nb-311A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter; 7.566590764 7.377082536 7.410385512 7.80088883 7.804433344 7.428462887 7.391015377 7.439446868 47574499 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Rubrivivax gelatinosus PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 7.460186893 7.608310469 7.857996019 7.537244489 7.460801958 7.815569576 7.51309497 7.630295036 7.498207943 152991895 napA Nitrogen Dissimilatory N reduction Sulfurovum sp. NBC37-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;genus:Sulfurovum; 7.57524703 7.477471231 7.187770829 7.031427251 118030874 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.309565565 8.17969652 7.899247009 7.876585817 8.610249434 8.104356568 8.11053533 7.867249027 8.405769677 114771560 ppx Phosphorus Phosphorus utilization alpha proteobacterium HTCC2255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.437752358 7.923185196 63029769 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.532822956 7.214916845 7.598914868 7.769582226 78044319 pstB Stress Phosphate limitation Carboxydothermus hydrogenoformans Z-2901 7.322678804 7.075072654 69276911 FTHFS Carbon cycling Acetogenesis Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 7.845406597 7.950208681 7.656203335 7.927829819 7.940505748 7.959281338 8.015975247 8.002704711 7.856745058 116065935 pstC Stress Phosphate limitation Synechococcus sp. BL107 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.164630067 7.095667328 6.817557012 7.345814279 7.069538375 7.063385529 86139512 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. MED193 7.508980323 7.521444391 7.663592061 7.527585748 7.843727221 7.719678871 7.72626266 7.483911496 7.683850724 70988651 BADH Organic Remediation Aromatics Other aromatics Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 7.292202125 7.472802767 251756717 AceA Carbon cycling Carbon degradation others Pectobacterium carotovorum subsp. carotovorum PC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 7.694849001 7.207070268 7.853075556 7.639270057 8.034291075 7.832071911 7.979694146 8.145541013 282566061 ppx Phosphorus Phosphorus utilization Providencia rustigianii DSM 4541 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 7.429574188 7.631473748 7.324093699 6.953201322 7.476941401 7.464758248 7.392459066 7.470022963 7.087039942 194173083 helicase_family_4 Bacteria phage REPLICATION Escherichia phage rv5 order:Caudovirales;family:Myoviridae; 8.039185586 7.856953731 7.973125467 7.679354679 7.970396215 7.919538364 7.817062972 8.04913439 7.461018134 38198905 gyrB other category gyrB Corynebacterium diphtheriae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium; 7.654170974 7.747910938 7.403744816 7.070622134 7.476311022 7.480385891 7.604546782 7.588473799 7.62148653 223935179 sigma_24 Stress Sigma factors bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 8.065930324 8.180300195 7.912831431 7.766834984 8.101046069 7.966309522 7.927317231 7.53211323 7.950917483 154508516 clpC Stress Protein stress Actinomyces odontolyticus ATCC 17982 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces odontolyticus; 7.454406633 7.19158725 7.791076701 7.154755835 7.599020485 154492796 silP Metal Resistance Silver Parabacteroides merdae ATCC 43184 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides merdae; 7.38422825 7.254658423 6.859690259 6.837704947 7.436841913 6.977567968 7.025744734 7.543190414 19171196 phenol_oxidase Carbon cycling Carbon degradation Lignin Gaeumannomyces graminis var. tritici superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Gaeumannomyces;species:Gaeumannomyces graminis; 8.029162632 7.695092565 7.370001907 7.383973824 7.849388005 7.737871225 7.807956046 7.801550706 7.883308986 126637073 nrfA Nitrogen Dissimilatory N reduction Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 7.281771015 7.323291255 7.436339836 7.095224947 6.931850219 7.632515575 7.275387439 7.09840737 7.25728024 37925725 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.265241256 7.128343717 7.148981793 6.937622322 6.961123859 7.440942882 7.111988311 6.96954959 7.210728752 150397528 SMR_antibiotics Antibiotic resistance transporter Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 7.693865521 7.611602688 7.504175701 7.226133646 7.633986917 7.744865213 7.158535046 7.178995361 149174362 sigma_70 Stress Sigma factors Planctomyces maris DSM 8797 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces maris; 7.566172902 7.274116932 7.443339897 7.347309852 7.788388579 84385669 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Vibrio splendidus 12B01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 6.870133866 7.017791849 6.456476299 7.452208432 148869943 CusA Metal Resistance Copper Vibrio harveyi HY01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 7.373858272 7.318067482 6.870246764 7.259523624 7.593831901 7.274215429 6.921560083 7.397712671 182634701 nmoA Organic Remediation Aromatics Nitoaromatics Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 7.589813608 7.619208368 8.121814118 7.52984013 8.302031442 8.009911146 8.092997034 7.766743305 167463560 narI Stress Oxygen limitation Paenibacillus larvae subsp. larvae BRL-230010 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus larvae; 7.500644754 7.453995614 7.349994989 76057417 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.151970969 6.897893845 209401644 narG Nitrogen Denitrification uncultured bacterium 7.650390165 7.483439279 7.596201671 7.705180861 7.398092078 7.808779023 7.529323201 7.52403549 7.71353086 148252529 alkK Organic Remediation Others Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.147996835 8.234453423 7.815690117 8.17061348 8.021742905 8.119274318 8.012567006 7.8044415 7.868092361 119960751 ArsC Metal Resistance Arsenic Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 7.348801421 7.498527936 7.13379294 6.829612961 7.390110115 7.74044453 6.996967254 7.079845847 150385379 ara Carbon cycling Carbon degradation Hemicellulose Victivallis vadensis ATCC BAA-548 superkingdom:Bacteria;phylum:Lentisphaerae;family:Victivallaceae;genus:Victivallis;species:Victivallis vadensis; 7.691605096 7.2577292 7.09387958 7.496333074 7.238013542 6.944676324 197698790 katE Stress Oxygen stress Streptomyces sp. SPB74 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7.955909696 7.832161589 7.9703849 7.911434758 8.003114273 8.155638948 8.55851132 8.449564626 8.054554637 145318441 SMR_antibiotics Antibiotic resistance transporter Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 7.080814123 7.725603627 45386167 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 8.252362202 8.178170238 8.12880463 7.737381584 7.879943757 8.022012671 8.005731302 8.19862828 7.765664969 84181207 rubisco Carbon cycling Carbon fixation Thiomicrospira pelophila superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Thiomicrospira; 7.433138093 7.064090607 7.043721107 7.421110638 7.081175138 7.348558925 38640149 terminase_large_subunit Bacteria phage REPLICATION Aeromonas phage Aeh1 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.349030813 7.278815671 7.049129738 7.398082159 7.564299547 156051306 nagG Organic Remediation Aromatics Aromatic carboxylic acid Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 7.153993786 7.633846244 7.422239205 7.360839477 7.313780218 7.130039609 7.625464707 7.754035363 146402742 cbdA Organic Remediation Aromatics Chlorinated aromatics Acidiphilium cryptum JF-5 8.088619198 7.731587587 7.831627793 7.555230755 8.162270724 7.953485023 8.052288526 7.995889249 268323819 mcrA Carbon cycling Methane Methane production uncultured archaeon superkingdom:Archaea; 7.763987115 7.776722155 7.507528264 7.271663522 7.396435454 7.542191965 7.742864915 7.429233962 7.348000005 61807996 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.722905697 7.725070738 7.984879742 7.561288112 7.659106961 8.14944378 7.694572863 7.846150714 7.884965147 114570174 AceB Carbon cycling Carbon degradation others Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 7.293633414 7.267721784 7.913389565 8.106496288 7.221841332 7.956746999 7.378798532 7.677367172 7.451454678 197782088 exochitinase Carbon cycling Carbon degradation Chitin Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 8.009785972 7.995591349 7.638281259 7.434867191 8.120303565 8.287516972 7.862123456 7.370640375 7.710370954 197103241 TerC Metal Resistance Tellurium Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 7.959460812 8.220449377 8.057683204 7.958929422 8.077054773 7.787943112 7.945145152 8.006454687 227191973 fnr Stress Oxygen stress Lactobacillus brevis subsp. gravesensis ATCC 27305 7.270680809 7.05275112 159898013 phoB Stress Phosphate limitation Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 7.931690185 8.143772672 8.046692521 7.334532139 7.637796554 7.723233888 8.123793192 77957839 ppx Phosphorus Phosphorus utilization Yersinia bercovieri ATCC 43970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 7.629682936 7.781291759 50512953 amoA Nitrogen Nitrification superkingdom:Bacteria; 7.113277307 7.131170883 2196852 gyrB other category gyrB Citrobacter sp. JYME-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter; 7.922738207 8.098026269 7.25092089 7.58546903 8.190670893 8.132325939 7.970564104 7.949386223 222154060 mnp Carbon cycling Carbon degradation Lignin Pleurotus ostreatus 7.25306871 7.26295494 218675397 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium etli GR56 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.440081834 7.334753168 7.366230158 7.404877145 221079981 tfdA Organic Remediation Aromatics Chlorinated aromatics Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 7.763377452 7.406287826 7.567564651 7.80465128 7.43837436 7.343256788 7.464145336 161385757 fnr Stress Oxygen stress Phaeobacter gallaeciensis 2.10 6.912787871 6.981862045 69937962 atzC Organic Remediation Herbicides related compound Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 7.355458304 7.589202203 7.580268395 7.690418714 8.116579939 7.432080495 7.078252115 160914176 Al Metal Resistance Aluminum Eubacterium dolichum DSM 3991 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichi;order:Erysipelotrichales;family:Erysipelotrichaceae;species:Eubacterium dolichum; 7.247198731 7.364930602 237730783 iro virulence Citrobacter sp. 30_2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter; 7.403573221 7.63847875 7.101918301 7.40672624 7.541191633 7.602913186 7.637261046 7.284701646 116619284 endochitinase Carbon cycling Carbon degradation Chitin Solibacter usitatus Ellin6076 7.592467653 7.389883692 7.231080445 7.153821233 7.488204577 7.01276315 7.05840987 7.524851082 68263979 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Corynebacterium jeikeium K411 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 7.004402168 7.139718058 7.290750498 6.919380579 68164636 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.875251774 7.941766196 7.051588519 7.868022907 8.021090637 7.84940378 8.044089845 91681287 pcc Carbon cycling Carbon fixation Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.748143872 7.541592353 7.532588861 7.504732126 7.509476341 7.853578828 259650772 clpC Stress Protein stress Lactobacillus rhamnosus GG superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 8.30382383 8.374951264 8.355535226 7.881614853 8.550036574 7.860983809 8.30525116 8.184839585 8.36766129 84494398 pimF Organic Remediation Aromatics Aromatic carboxylic acid Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 7.713867879 7.793575749 7.604871804 7.246561132 7.944888094 7.920631501 7.873214426 8.102495161 7.72756721 134093858 B_lactamase_A Antibiotic resistance Beta-lactamases Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 7.463531496 6.819105646 7.257280516 7.052708834 7.225210799 156110640 gyrB other category gyrB Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 7.303157654 7.338590685 7.426602446 7.372635251 7.246844131 7.932447923 7.413156196 7.274737416 7.386033345 150838480 gyrB other category gyrB Marinomonas sp. MWYL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 7.065148974 6.968632859 7.14962169 33243241 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6.972909528 6.724411486 7.138082476 152999008 cytochrome Energy process Energy process Shewanella baltica OS185 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 7.240458584 7.224540562 7.055888765 6.727772064 7.707045229 167034142 pstA Stress Phosphate limitation Pseudomonas putida GB-1 7.834150885 7.849870711 7.393852863 7.193480837 7.652451103 7.984637328 7.525171082 7.41097006 46139663 pheA Organic Remediation Aromatics Other aromatics Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 7.403768681 7.437627392 7.301994958 7.464267758 7.260011596 7.691878345 7.249067421 7.265023704 7.103801666 34499190 Arylest Organic Remediation Aromatics Other aromatics Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 7.647522787 7.599204909 7.434656786 7.228423374 7.489407303 7.858253872 7.670109834 7.751471509 7.591424845 184192113 ppx Phosphorus Phosphorus utilization Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.430800007 7.202327639 7.238182553 7.171442299 7.380866214 5531382 proX Stress Osmotic stress Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.256037642 8.152830362 7.963989627 7.409366982 8.331107125 7.804173317 8.043374779 7.907381828 8.013788492 87281203 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.721135055 7.308074974 7.384974345 6.869843506 7.093176064 7.359250712 7.389417452 57640693 atzA Organic Remediation Herbicides related compound Thermococcus kodakarensis KOD1 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus kodakarensis; 7.509598982 7.50990977 7.464449837 7.125851902 7.350351565 7.682598566 7.432841862 7.448502588 42541279 gyrB other category gyrB Photobacterium leiognathi superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium leiognathi; 7.160704297 6.989882448 6.925300934 6.565495599 7.492267037 39935509 ahpC Stress Oxygen stress Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.992860272 7.81103833 7.506495278 7.554746194 7.43882512 7.771093225 7.437973286 7.3975613 7.505612978 146274566 sigma_24 Stress Sigma factors Pelotomaculum thermopropionicum SI superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Pelotomaculum;species:Pelotomaculum thermopropionicum; 7.058926448 7.319192516 6.953687891 7.105148167 6.700606869 7.639982244 224824909 narI Stress Oxygen limitation Lutiella nitroferrum 2002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Lutiella;species:Lutiella nitroferrum; 7.415226686 7.154472098 7.419269971 7.589208449 7.18137706 8.081035882 7.200896106 7.189056565 7.788691461 169630710 pcc Carbon cycling Carbon fixation Mycobacterium abscessus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.486189734 7.397903906 7.472004104 7.566250784 7.501327688 7.859182969 7.415038275 7.682448267 91697226 nagG Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 7.102735231 7.280767772 7.196246932 258510025 gyrB other category gyrB Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 7.509090449 7.431702546 7.179073376 7.317641822 7.338811441 7.86539362 118567469 nitA Organic Remediation Aromatics Other aromatics Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:Candidatus Ruthia magnifica; 7.980594664 7.633810216 7.568506358 7.465757458 7.872444942 7.737483559 77964440 chnB Organic Remediation Other Hydrocarbons Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.891631486 7.943263059 7.784209525 7.938798142 7.932453534 7.76338195 8.019246524 7.78300859 7.357933261 148259849 formate_dehydrogenase_family_accessory_protein Bioleaching other category Acidiphilium cryptum JF-5 7.945643402 7.580674922 7.590990591 7.699305391 7.829626079 7.883680973 7.993110773 7.729752364 78364405 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Thiomicrospira crunogena XCL-2 7.797844272 7.349590751 7.468476649 7.360443288 7.739516438 7.510090271 7.484411605 7.591589524 7.662454688 53729103 obgE Stress Radiation stress Actinobacillus pleuropneumoniae serovar 1 str. 4074 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus pleuropneumoniae; 7.624970142 7.417754052 7.350961707 7.062091333 7.322461822 7.694190208 7.467962405 7.787593369 145213681 bphA Organic Remediation Aromatics Polycyclic aromatics Mycobacterium gilvum PYR-GCK 7.360886698 7.294607074 7.321446026 7.359552768 7.988466542 256035750 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Chitinophaga pinensis DSM 2588 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 7.711901081 7.682037737 7.49022787 7.271167603 7.712156664 7.787855433 7.447220484 7.080089371 88777428 4HBH Organic Remediation Aromatics BTEX and related aromatics Reinekea sp. MED297 7.72781155 7.221710385 6.817272663 7.626777676 146342149 fnr Stress Oxygen stress Bradyrhizobium sp. ORS278 7.684022742 7.264746064 7.374705798 7.076383616 7.655427448 7.634954242 7.816371663 7.348546425 7.421703896 126714083 pstC Stress Phosphate limitation Roseobacter sp. CCS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.25726557 7.269418763 119767916 nifH Nitrogen Nitrogen fixation Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 7.332664154 7.426381824 7.153635499 7.500052313 7.893035145 7.40210519 7.603789053 88920726 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 7.827200436 7.843846819 7.378483245 7.764870862 7.5997016 7.764902047 7.629512003 7.709589115 7.866288421 119448103 pstB Stress Phosphate limitation Alteromonadales bacterium TW-7 7.189954139 6.872398226 7.015104397 7.027140403 7.122581411 146402590 pstC Stress Phosphate limitation Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 7.554993657 8.022085301 7.879039784 7.554452977 8.422872199 8.004478691 7.944203319 7.910243069 115421349 TerC Metal Resistance Tellurium Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 7.868078113 7.866402745 7.588104343 7.3744717 7.720964176 7.727520519 7.550956999 7.769467022 282588514 sigma_70 Stress Sigma factors Prevotella bivia JCVIHMP010 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bivia; 7.077132193 6.955257152 6.957890279 6.685696406 6.625181019 7.40030372 6.965326815 7.034790928 7.052731249 15920765 thioredoxin Bioleaching Sulphur Sulfolobus tokodaii str. 7 7.197925453 6.860112033 7.171174743 197116466 fnr Stress Oxygen stress Geobacter bemidjiensis Bem 7.72679283 7.525073879 7.815668498 7.682122809 7.824971438 8.040070284 8.117256052 7.992013995 15903509 cadBD Metal Resistance Cadmium Streptococcus pneumoniae R6 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus pneumoniae; 7.296774097 7.163707536 7.136524748 6.905988151 6.779125299 7.23456929 6.933419196 6.861276882 146395869 cap virulence capsule Geobacter uraniireducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 6.946032484 6.812122476 7.274632081 6.744538541 7.279477517 192809245 CopA Metal Resistance Copper Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.728701514 7.377712061 7.508292592 7.744662428 7.589108237 7.749073982 8.042055576 7.731608808 44662913 TerC Metal Resistance Tellurium symbiont bacterium of Paederus fuscipes superkingdom:Bacteria; 7.15997025 7.110349328 7.118243587 148499651 vanA Carbon cycling Carbon degradation Others Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 7.517472942 7.363599787 7.518744875 7.46702816 6.996082036 7.674671714 7.482666463 7.152972518 7.431863412 218887618 cytochrome Energy process Energy process Desulfovibrio vulgaris str. 'Miyazaki F' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 9.087514895 9.087197773 8.863547002 9.062902249 9.460574295 89331568 pcpB Organic Remediation Herbicides related compound Chlamydophila felis Fe/C-56 superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Chlamydiaceae;genus:Chlamydophila;species:Chlamydophila felis; 7.494310732 7.289131158 7.107672338 7.061478383 7.412899384 7.121282038 7.334521948 78517017 ChrA Metal Resistance Chromium Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.574550895 7.336026851 7.12707223 227526778 glnR Stress Nitrogen limitation Lactobacillus ruminis ATCC 25644 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus ruminis; 7.741516922 7.753083425 7.360716654 6.886272314 7.50897232 7.443316489 7.488622791 7.067346848 7.025556339 238706688 nplT Carbon cycling Carbon degradation Starch Yersinia ruckeri ATCC 29473 7.090730187 7.995413952 8.045683742 7.571528321 7.662534341 91690021 pcaG Organic Remediation Aromatics Other aromatics Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.447660723 7.621084763 7.197955029 7.510114663 7.54572905 7.901545549 7.4507017 7.190432937 7.281509121 124259243 pstB Stress Phosphate limitation Methylibium petroleiphilum PM1 8.212610742 8.43503487 7.95266778 8.912980582 8.733057179 8.586408544 8.733006762 209534768 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.499960642 7.250413678 212637564 SMR_antibiotics Antibiotic resistance transporter Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 7.066535408 7.029229382 77545114 sigma_32 Stress Sigma factors Pelobacter carbinolicus DSM 2380 7.409398777 7.733994015 8.086798372 7.976422113 7.877619291 7.902846876 7.746199917 112464095 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.254694768 7.199379254 7.360642958 20089772 pstC Stress Phosphate limitation Methanosarcina acetivorans C2A superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina acetivorans; 7.367208432 6.805711111 148513128 iro virulence Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.465306642 8.368633216 8.112667903 8.453587967 8.527639584 8.367276486 8.236767492 8.062367621 4894598 xylanase Carbon cycling Carbon degradation Hemicellulose Streptomyces avermitilis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7.915678954 7.825305217 7.840918871 7.354372018 8.17315491 7.931691165 7.758267551 7.848433588 7.907586934 157804714 APS_AprB Sulphur adenylylsulfate reductase Chlorobaculum thiosulfatiphilum superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum; 7.402069793 7.385643199 7.023394685 7.068301135 7.296393867 7.246171592 110597978 pstB Stress Phosphate limitation Chlorobium ferrooxidans DSM 13031 7.84824469 7.768546548 7.265902368 7.242995989 7.719625231 7.427627344 7.485670364 61679304 CopA Metal Resistance Copper Bifidobacterium animalis subsp. animalis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 7.659905502 7.2792218 7.322806015 7.208258473 7.424745469 194307041 primase Bacteria phage REPLICATION Morganella phage MmP1 7.313834456 7.213023899 6.912259291 254784529 endochitinase Carbon cycling Carbon degradation Chitin Teredinibacter turnerae T7901 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 7.332644846 7.262029198 7.128544241 7.16977913 7.393891224 7.256627188 7.051786927 78093588 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.208080243 7.752256051 7.565593891 7.668352612 7.710050233 7.99601702 8.006505916 7.768421238 7.83886448 62148044 clpC Stress Protein stress Chlamydophila abortus S26/3 superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Chlamydiaceae;genus:Chlamydophila;species:Chlamydophila abortus; 7.567683996 7.43101694 7.081641614 7.852476193 7.562655064 7.353396421 218781946 gyrB other category gyrB Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 8.442437159 8.068099918 7.972679484 8.040238851 7.954005974 7.904233964 7.97214659 8.255563322 260633355 cydA Stress Oxygen limitation Prevotella sp. oral taxon 472 str. F0295 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella sp. oral taxon 472; 7.253895988 7.175496975 7.455845526 84499961 pimF Organic Remediation Aromatics Aromatic carboxylic acid Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 7.986321785 8.083825269 7.885657025 8.067664915 8.080017272 8.247996591 8.256841773 8.071486901 7.853832118 27530805 gyrB other category gyrB Nocardia sp. MBIC05582 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia; 7.610929581 7.322146451 7.104606879 7.294939369 7.630195338 7.500594602 7.412771246 7.475847901 3157664 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 7.299369116 7.072350062 7.03854461 7.215663739 255281906 pstB Stress Phosphate limitation Bryantella formatexigens DSM 14469 7.102218917 7.077129053 7.11625394 6.958760517 6.636260817 7.382646962 6.998948623 7.057557742 7.516142249 24347561 TerC Metal Resistance Tellurium Shewanella oneidensis MR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella oneidensis; 7.131109381 7.371478073 6.989573334 6.920540476 77969216 nagG Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.927252171 7.567305245 7.619043311 7.682039212 153796651 sigma_24 Stress Sigma factors Ruminococcus gnavus ATCC 29149 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus gnavus; 7.017732233 7.130088428 196177876 ahpC Stress Oxygen stress Microcoleus chthonoplastes PCC 7420 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus chthonoplastes; 7.501365919 7.095754326 7.181686458 6.823113068 7.525881769 7.26509748 7.276785825 39976417 glx Carbon cycling Carbon degradation Lignin Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 7.191105261 7.37368881 7.594615082 7.671189209 7.630479999 7.766914629 7.619814565 7.681147995 7.660347969 66044067 TerD Metal Resistance Tellurium Pseudomonas syringae pv. syringae B728a 7.681851789 7.748860617 8.066160741 7.457145555 7.99635427 7.821119615 8.176358406 8.027611568 147668552 B_lactamase_C Antibiotic resistance Beta-lactamases Klebsiella pneumoniae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella; 7.171369346 7.030293101 6.993175333 163262095 norB Nitrogen Denitrification Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 7.941445697 8.041008095 7.853225135 7.828801195 7.93159364 257831747 srt virulence surface protein Enterococcus faecium Com12 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus faecium; 7.324388398 7.424612138 7.317059558 7.026357613 7.290802968 259417738 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Silicibacter sp. TrichCH4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.367226803 7.325914505 7.182799062 7.04673307 63081878 nosZ Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 7.340313877 7.642124206 7.649176812 7.378331898 7.34415217 7.148618326 7.455484198 189197823 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7.342013133 7.342074923 7.246495011 7.680021136 7.673808139 7.294789878 7.428751669 19577336 B_lactamase_A Antibiotic resistance Beta-lactamases Providencia alcalifaciens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia; 7.402277973 6.710018221 7.225233473 6.921597863 7.344183941 149783661 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.325105823 7.473719401 7.375653028 7.651380924 6.964859018 7.540294877 7.366990711 7.007946778 88181244 pheA Organic Remediation Aromatics Other aromatics Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 7.896785328 7.937261465 7.865626881 8.359132605 8.258688782 7.879281598 8.21735083 91790932 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 7.558796458 6.941819393 8.140775749 8.310957615 7.789725916 8.293208458 7.776420892 7.957102961 240103508 pstB Stress Phosphate limitation Thermococcus gammatolerans EJ3 7.620126039 7.445082716 7.017962743 7.020141987 7.855178461 7.175323494 7.146911622 7.279750969 116067548 nifH Nitrogen Nitrogen fixation Synechococcus sp. RS9916 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.305619478 7.140670217 268593417 oxyR Stress Oxygen stress Providencia rettgeri DSM 1131 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rettgeri; 7.405857735 7.501483021 7.309545354 7.519328153 6.904107726 7.725297809 7.394321124 7.264330694 7.612943273 116067887 glnA Stress Nitrogen limitation Synechococcus sp. RS9916 7.502043727 7.192504473 7.812938366 7.062218398 7.824350975 7.091579697 7.297754238 70930952 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.543898498 7.731910745 7.244140069 7.738877384 7.967741444 8.49053642 8.122756359 8.059218133 8.066864114 118166080 Catechol Organic Remediation Aromatics Other aromatics Mycobacterium avium 104 7.638759192 7.480091104 7.378346644 7.101895986 7.24068071 7.455959492 7.149323006 7.292592253 162955634 pimF Organic Remediation Aromatics Aromatic carboxylic acid Renibacterium salmoninarum ATCC 33209 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Renibacterium;species:Renibacterium salmoninarum; 7.164366283 7.106427403 7.327851428 6.886087756 7.393923006 7.001154109 7.144280223 7.678149415 4210874 Xamo Organic Remediation Other Hydrocarbons Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 7.380146852 7.522387089 7.495499839 7.148935206 7.487746298 7.825836025 7.613475432 7.206918809 7.569256526 119387032 pstB Stress Phosphate limitation Paracoccus denitrificans PD1222 8.03847173 7.47966016 7.213363796 7.192856277 7.547922028 8.06959059 7.587165763 7.507638838 7.467918679 50084932 ppk Phosphorus Phosphorus utilization Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 7.580842752 7.564277119 7.309583346 7.449709653 7.508087408 7.575936634 7.298351524 7.323122287 7.645459738 119775069 alkK Organic Remediation Others Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 7.674289076 7.663118464 7.675879347 7.316993366 7.664652042 7.683066375 7.765287112 7.479854006 7.322806418 58422509 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.44086662 7.555200929 7.711860391 6.923323642 7.612254831 260912533 cydB Stress Oxygen limitation Prevotella sp. oral taxon 472 str. F0295 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella sp. oral taxon 472; 8.791916503 8.719731181 8.983904932 8.23018297 8.848215469 8.257424552 8.850953294 9.168572784 8.319638044 76363127 Catechol Organic Remediation Aromatics Other aromatics Rhodococcus opacus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.345097545 8.369846501 8.106009479 8.085950847 8.302085456 7.670637764 7.618705436 7.739805113 256802192 proV Stress Osmotic stress Streptomyces viridochromogenes DSM 40736 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 7.983655619 8.035972851 7.955244737 7.924048763 8.599012756 8.442442179 8.571453618 8.298435786 29125970 nosZ Nitrogen Denitrification uncultured soil bacterium superkingdom:Bacteria; 6.946513232 7.122935147 7.051383604 6.838275681 7.443725019 7.027457531 7.058629965 7.306970887 254516194 sox Sulphur Sulphur oxidation gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.728548535 7.455670628 7.461036303 7.900839754 7.579011902 7.959976989 7.733854555 7.839056104 15074110 dmsA Organic Remediation Others Sinorhizobium meliloti superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium; 7.555039375 7.440320365 7.165547051 7.401042052 6.975531237 219666776 rd Organic Remediation Chlorinated solvents Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 7.389935985 7.293256844 7.367039172 7.366346657 6.968661928 7.36969496 7.077186035 7.122033476 7.187367086 56911915 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 6.805775032 6.919754657 6.647564675 7.27667922 46125995 phoA Stress Phosphate limitation Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 7.652589922 7.680942432 7.58185299 7.719912679 7.863360953 7.72169826 7.83343727 7.699119752 7.624361942 209520873 pstA Stress Phosphate limitation Burkholderia sp. H160 7.695331975 7.776510634 7.54795068 7.934478451 7.899540646 7.876150162 7.736646414 7.683696067 71903876 fnr Stress Oxygen stress Streptococcus pyogenes MGAS6180 6.957471351 7.019636051 187727767 B_lactamase Antibiotic resistance Beta-lactamases Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 7.878575623 8.234417827 7.814978592 7.623454433 7.866632159 7.919303524 7.633407205 7.883780821 256791313 sigma_70 Stress Sigma factors Slackia heliotrinireducens DSM 20476 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Slackia;species:Slackia heliotrinireducens; 7.900557203 7.585024935 7.396422845 7.916245835 7.673600992 7.646189702 7.636472137 7.630148308 154297108 tfdA Organic Remediation Aromatics Chlorinated aromatics Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 7.612265031 7.336526821 7.313977443 7.211611311 7.120761994 7.566171088 7.331994023 7.106092502 7.499195264 198271076 katA Stress Oxygen stress Bacteroides plebeius DSM 17135 7.391487271 6.997037668 184195468 CopA Metal Resistance Copper Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.560487861 7.543066991 7.086048874 7.64462757 7.753287522 7.694109792 7.54101895 88687733 phenol_oxidase Carbon cycling Carbon degradation Lignin Spongipellis sp. FERM P-18171 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Spongipellis; 7.0273274 7.333831729 7.038195224 7.577214172 73541252 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.015111307 7.909294056 7.700358774 8.040050412 8.1044652 7.890481323 7.833890444 7.771873577 7.252945129 557472 ara Carbon cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 7.161032474 7.05226565 7.605455174 7.379994611 6.973002319 7.972625018 7.270480886 7.6670131 34101822 hly virulence hemolysin Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 8.314580575 8.176776129 7.760431466 8.046184416 8.503014069 8.30749729 8.182646262 8.07105243 8.207825474 70984884 endochitinase Carbon cycling Carbon degradation Chitin Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 7.369797814 7.655699732 7.355434521 6.725715821 7.553643629 7.498535211 7.510105179 7.191623145 7.595780245 256396513 glnA Stress Nitrogen limitation Catenulispora acidiphila DSM 44928 7.447626821 7.16978862 7.361660741 6.968098118 7.114748218 206686620 nhh Organic Remediation Aromatics Nitoaromatics Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.504750062 7.448220858 7.642954824 7.602442154 7.702453065 7.60209837 7.619164397 261353240 AceB Carbon cycling Carbon degradation others Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Phyllachorales;genus:Verticillium;species:Verticillium albo-atrum; 7.683797823 7.178210932 7.62124898 7.707557938 7.488861462 7.511620147 7.598384588 7.678701094 7.210397296 194333747 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Prosthecochloris aestuarii DSM 271 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Prosthecochloris;species:Prosthecochloris aestuarii; 7.297987889 7.007896989 7.102647754 6.845943732 7.458790949 7.174064501 6.933656735 99030543 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 7.044404538 7.191165981 7.509504412 7.041196739 7.392970845 167627972 ArsC Metal Resistance Arsenic Francisella philomiragia subsp. philomiragia ATCC 25017 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Francisellaceae;genus:Francisella;species:Francisella philomiragia; 6.931809307 7.23197322 238695035 terminase_large_subunit Bacteria phage REPLICATION Enterobacteria phage JSE order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.62518708 7.43431795 7.316889246 7.239755048 7.377481103 16804534 pstB Stress Phosphate limitation Listeria monocytogenes EGD-e 7.595295922 7.414936046 7.385134855 88799326 AceB Carbon cycling Carbon degradation others Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 7.424376092 7.296709637 7.558904162 7.433037009 6.992174607 7.330566471 7.364331156 7.149053756 209897567 dmsA Organic Remediation Others Enterobacter cancerogenus ATCC 35316 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 7.451232776 7.304726115 15673699 pstB Stress Phosphate limitation Lactococcus lactis subsp. lactis Il1403 7.177861256 7.132247952 7.109859205 171988980 CopA Metal Resistance Copper Exiguobacterium sibiricum 255-15 7.942511723 8.012730318 7.836674367 7.804176066 7.646779967 7.657827418 7.486109002 39648631 pnbA Organic Remediation Aromatics Nitoaromatics Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.917754416 8.444119353 8.471904909 7.702312726 8.289794889 7.872692506 8.197627117 7.808499865 29893208 alkJ Organic Remediation Other Hydrocarbons Rhodococcus ruber superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7.626865642 7.744968572 7.541164292 7.771897892 7.768824914 7.787154033 8.045775378 8.240102251 7.600543357 118060454 gyrB other category gyrB Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 7.071213384 6.972685826 6.974266846 7.189341413 7.586498814 7.307148598 6.958583646 119866071 gyrB other category gyrB Mycobacterium sp. KMS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.959348927 8.199888611 7.850753243 7.905901679 8.398551664 8.359420955 8.31869461 8.315066719 8.187642009 56677433 CopA Metal Resistance Copper Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 8.285234187 8.523806238 8.678284006 8.662500447 8.698809365 8.748803718 8.149099996 8.367099669 8.238063318 108760686 atzA Organic Remediation Herbicides related compound Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 7.406056859 7.346705337 7.173893812 7.022659101 7.268343956 7.770949205 7.372380593 7.190759966 7.367595133 4468124 dehH109 Organic Remediation Chlorinated solvents Bradyrhizobium sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.645749411 7.724269187 8.092552586 7.345580202 8.051273664 7.877194515 8.012902426 7.90040468 7.97076993 199432813 AceB Carbon cycling Carbon degradation others Debaryomyces hansenii superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Debaryomyces; 7.437470377 7.823766579 7.46327339 7.520580012 7.520387451 71726092 AceB Carbon cycling Carbon degradation others Janthinobacterium lividum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 7.574432731 7.627408295 7.634623021 7.85767397 8.148038128 8.310670743 7.872270309 7.828053556 254460810 sigma_24 Stress Sigma factors Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.603383182 7.682509754 7.655057271 7.587324477 7.964897416 8.011771688 7.757834842 7.618475876 7.548015121 83576192 pcc Carbon cycling Carbon fixation Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 8.018883023 7.857684701 7.717519609 7.5374033 8.016913958 8.101932512 7.628909735 7.885357048 7.90445008 145221146 cumA Organic Remediation Aromatics Other aromatics Mycobacterium gilvum PYR-GCK 7.69381017 7.581507612 7.495701476 7.149282838 7.58742106 7.365175029 7.182188453 119765658 gyrB other category gyrB Shewanella amazonensis SB2B 7.580697574 7.505032794 7.216408326 7.298548987 7.502988549 7.43135518 7.292724619 7.251592255 7.257286001 148474782 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.916068966 7.667235244 7.584458129 7.115619648 7.573570829 7.368734378 7.411112891 7.455704057 124389571 nifH Nitrogen Nitrogen fixation Halorhodospira halochloris superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira; 7.322347062 7.241220626 7.150782353 7.547880313 7.071128217 7.242860366 7.06598083 487444 amyA Carbon cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7.875113215 7.825140494 7.762462947 8.111784777 7.90549073 7.80323817 7.489602055 7.663474627 8.026527598 70986694 endoglucanase Carbon cycling Carbon degradation Cellulose Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 7.365466552 7.458042006 7.439748392 7.800010978 6.870930149 8.038679803 7.317404579 7.24215182 146191549 pstB Stress Phosphate limitation Bradyrhizobium sp. ORS278 7.841035358 7.927650027 7.704119234 7.719141783 7.733791234 7.722322509 126726731 glnA Stress Nitrogen limitation Rhodobacterales bacterium HTCC2150 7.902847046 8.049745639 7.70601777 7.711078631 8.341923108 8.196935838 8.479815912 8.444063703 8.455861826 222114661 ahpF Stress Oxygen stress Streptococcus uberis 0140J superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus uberis; 7.192690889 6.727135783 6.91832399 27348800 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.916041182 7.866232365 7.792825175 7.463579052 7.99863889 7.888460853 7.669208891 7.342348001 7.588325471 53758136 atzA Organic Remediation Herbicides related compound Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 7.556918813 7.658876524 7.589218447 7.372372036 7.320348918 7.126819561 7.21448798 187483627 ChrA Metal Resistance Chromium Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 7.92463172 7.699598462 7.857231329 7.886134935 8.024635562 7.792901306 7.892428557 211958210 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 7.670144592 7.379345229 7.175547674 7.344613466 3927889 TerC Metal Resistance Tellurium Desulfovibrio vulgaris superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 7.612223498 7.59643751 7.521853106 7.120179457 7.546687759 7.860651272 7.621414951 7.500750833 7.637321675 83757583 pstS Stress Phosphate limitation Salinibacter ruber DSM 13855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 7.731674508 7.538002433 7.286247507 6.986803193 7.313086529 7.780383553 7.391196165 7.434188744 6.924957111 212687945 gdh Nitrogen Ammonification Providencia alcalifaciens DSM 30120 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 7.260023925 7.225121074 7.149453004 228476053 pstC Stress Phosphate limitation Staphylococcus hominis SK119 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus hominis; 7.168787133 7.06017749 198251909 sigma_32 Stress Sigma factors Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 7.33053623 7.46672195 7.463409284 7.233495791 7.544611555 7.691517956 7.849519901 7.727674107 7.569649903 71907299 fnr Stress Oxygen stress Dechloromonas aromatica RCB 7.276782118 7.269263449 7.232264554 218532750 obgE Stress Radiation stress Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 7.885304704 8.136017839 113875094 mer Metal Resistance Mercury Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 7.200785777 7.091139287 7.519167004 7.268048361 7.136546131 7.867620369 7.074774357 7.187796028 7.320274671 112462205 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.012963859 7.580767667 7.717137627 8.130921511 7.299999121 7.964210734 7.412824963 7.857729858 124514888 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Leptospirillum sp. Group II UBA superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 7.085790264 6.932067207 7.292192102 7.255575119 7.619716947 227528510 srt virulence surface protein Lactobacillus ruminis ATCC 25644 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus ruminis; 7.436990638 7.538353557 7.465962896 7.41632045 7.502432787 7.660895384 7.281345003 112463645 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.01341853 7.779509585 7.75414035 7.568174841 7.386182673 8.075249659 7.524187476 7.492054958 7.534046763 13937459 atzA Organic Remediation Herbicides related compound Pseudomonas sp. ADP superkingdom:Bacteria;phylum:Proteobacteria; 8.388266956 8.411179658 8.426628632 8.342818566 8.808935092 8.480841197 8.765128582 8.462744314 8.347937818 118571390 bphF1 Organic Remediation Aromatics Polycyclic aromatics Mycobacterium ulcerans Agy99 7.734494768 7.406778227 7.410916062 7.885878602 7.463431849 55978138 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.718551114 7.764677657 7.411639114 7.287818413 7.777013916 7.846516263 7.672108999 7.461911518 7.690220131 119409961 linB Organic Remediation Pesticides related compound Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 7.728862382 7.57052406 7.298255189 7.174766644 7.01744887 7.776074586 88866364 dsrB Sulphur sulfite reductase bacterium LS1414 superkingdom:Bacteria; 7.427061182 7.681746221 7.432380235 7.547308803 7.309756466 7.769945295 7.526044649 7.552458848 7.296585698 116223599 fnr Stress Oxygen stress Solibacter usitatus Ellin6076 7.486962458 7.5959504 6.960278291 7.7281686 7.635322996 7.598587616 7.644120261 7.507894149 3157702 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 7.845588361 7.919130686 7.830803142 7.899108734 7.813645236 7.748718673 7.745909824 8.105411749 7.618028548 193089548 hly virulence hemolysin Chloroherpeton thalassium ATCC 35110 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chloroherpeton;species:Chloroherpeton thalassium; 7.338031837 7.530324369 6.784002879 7.35978881 189426767 fnr Stress Oxygen stress Geobacter lovleyi SZ 7.459649167 7.283720189 7.209246241 7.105526161 7.527633245 6.991404994 7.196809955 4514465 gyrB other category gyrB Acinetobacter sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 7.002795897 7.268051367 7.885600803 7.546978191 211960261 narH Stress Oxygen limitation Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 8.056654087 7.308558485 7.548510948 7.651810401 7.28033748 7.547181447 120613982 gyrB other category gyrB Bartonella bacilliformis KC583 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella bacilliformis; 7.40763437 7.441174604 7.477281453 7.390850744 7.263832053 170144580 cellobiase Carbon cycling Carbon degradation Cellulose Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 7.65933788 7.196103513 7.391046051 7.376571878 7.077538801 227526669 ppk Phosphorus Phosphorus utilization Lactobacillus ruminis ATCC 25644 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus ruminis; 7.164156158 7.091790672 119670964 mauAB Organic Remediation Herbicides related compound Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 7.427831879 7.054483601 7.489207106 7.308319009 6.747611269 7.748982897 60593161 dsrB Sulphur sulfite reductase uncultured prokaryote 7.821798129 7.936466493 7.243047647 7.74232902 7.797591634 7.738902412 7.69213279 262311431 phoB Stress Phosphate limitation Acinetobacter junii SH205 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter junii; 7.869947598 7.683869477 7.689692554 7.887266625 7.345702261 7.466811828 7.622251444 7.583181498 256420949 sigma_24 Stress Sigma factors Chitinophaga pinensis DSM 2588 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 7.104348569 7.090897512 7.360513104 6.779839623 7.290545294 6.995516872 7.587609996 85715796 ChrA Metal Resistance Chromium Nitrobacter sp. Nb-311A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter; 7.763855273 7.86498087 7.851332532 8.411716574 8.076556001 7.910692079 8.053630184 8.171256474 56180547 glnA Stress Nitrogen limitation Idiomarina loihiensis L2TR 7.218063186 7.496636041 7.049890087 159102608 katE Stress Oxygen stress Malassezia globosa CBS 7966 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Exobasidiomycetes;order:Malasseziales;family:Malasseziaceae;genus:Malassezia;species:Malassezia globosa; 6.985132947 7.398447762 7.62521922 7.128110761 7.281458216 219860649 CopA Metal Resistance Copper Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 7.839201586 7.549922096 7.3042876 7.227219317 7.957199591 7.310308158 7.15137789 7.06709722 219128306 mer Metal Resistance Mercury Phaeodactylum tricornutum CCAP 1055/1 superkingdom:Eukaryota;phylum:Bacillariophyta;class:Bacillariophyceae;order:Naviculales;family:Phaeodactylaceae;genus:Phaeodactylum;species:Phaeodactylum tricornutum; 7.129069268 6.901527585 7.534085274 7.40621758 7.825851133 7.059044765 7.448646801 189348112 pmdAB Organic Remediation Aromatics Others Burkholderia multivorans ATCC 17616 8.27711616 8.070388469 7.860455948 7.678498524 8.180211264 8.205441426 8.13924186 8.183405149 7.84993579 220704129 CopA Metal Resistance Copper Blautia hansenii DSM 20583 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Blautia;species:Blautia hansenii; 7.958748643 7.590802701 7.99725334 8.008860943 7.913550486 7.807269653 7.838265957 163812235 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.206491072 6.880200637 147678166 phoB Stress Phosphate limitation Pelotomaculum thermopropionicum SI superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Pelotomaculum;species:Pelotomaculum thermopropionicum; 7.879281933 7.806311779 7.554645786 7.589856968 8.067823457 7.912876843 7.851214214 7.827449289 7.785135143 114326873 ppx Phosphorus Phosphorus utilization Granulibacter bethesdensis CGDNIH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 7.299359861 7.243201892 7.271913571 7.042056501 6.75439671 7.549827629 7.208270831 7.135592261 126637923 pstA Stress Phosphate limitation Shewanella loihica PV-4 7.649192982 8.020179154 7.579122029 7.178941184 7.741796566 7.717413062 7.609977982 8.037976882 32895108 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.574340637 7.563493747 7.598731557 7.434819205 7.675444891 7.915057522 7.734232071 7.710387244 7.878846144 198258625 nrfA Nitrogen Dissimilatory N reduction Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 8.465279951 7.998446806 7.837093145 7.968870109 8.54916801 8.395942465 8.081083858 8.48069061 126704871 gyrB other category gyrB Rhodobacterales bacterium HTCC2150 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.666675028 7.381528525 7.568688733 7.200641801 7.171881504 7.381843787 7.461738897 7.29283677 27372237 exochitinase Carbon cycling Carbon degradation Chitin Alteromonas sp. O-7 7.737669025 7.81365975 7.266011809 7.672277605 7.515894193 7.681153129 8.165841777 229918182 glnR Stress Nitrogen limitation Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 7.550032252 7.26049674 6.972835312 6.764717317 7.551393533 144898057 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Magnetospirillum gryphiswaldense MSR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 7.257202052 7.285690079 7.399637596 7.103671866 7.363214765 7.201606846 7.427488679 7.141906546 134074413 B_lactamase_C Antibiotic resistance Beta-lactamases Acinetobacter baylyi superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 7.42152399 7.361002421 7.306272334 7.080776038 7.405338974 7.586668354 7.280497138 7.195118516 7.350510918 37791155 phenol_oxidase Carbon cycling Carbon degradation Lignin Volvariella volvacea superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pluteaceae;genus:Volvariella; 8.413375672 8.222654315 8.205758762 7.836066065 7.94855917 8.12841419 7.859220597 7.54723826 179351769 tutFDG Organic Remediation Aromatics BTEX and related aromatics Natranaerobius thermophilus JW/NM-WN-LF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Natranaerobiales;family:Natranaerobiaceae;genus:Natranaerobius;species:Natranaerobius thermophilus; 7.369045562 7.352763616 6.605719561 7.740713494 163751022 phoB Stress Phosphate limitation Shewanella benthica KT99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella benthica; 6.877471183 6.845666526 7.040238692 226358381 rubisco Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.116625822 7.175464853 6.938792911 7.085357414 196202914 pstA Stress Phosphate limitation Cyanothece sp. PCC 7822 8.133063195 7.905357136 7.673898301 7.425946241 8.274364786 7.438274762 7.704847088 7.811758051 222449510 TerC Metal Resistance Tellurium Chloroflexus sp. Y-400-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus; 7.199448116 7.135336726 117991420 atzA Organic Remediation Herbicides related compound Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.448900991 7.585866383 7.121054127 7.319653115 223887107 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.111284166 6.853616197 167653869 tutFDG Organic Remediation Aromatics BTEX and related aromatics Anaerostipes caccae DSM 14662 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Anaerostipes;species:Anaerostipes caccae; 7.165793733 7.224305103 7.063195784 7.031129242 6.874615063 225204974 SMR_antibiotics Antibiotic resistance transporter Proteus penneri ATCC 35198 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus penneri; 7.017454218 7.139272947 6.84588895 134300301 sigma_70 Stress Sigma factors Desulfotomaculum reducens MI-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum reducens; 7.391593697 7.208792235 7.393564359 7.220809472 7.47346273 7.284580077 7.193915748 7.679266253 75241089 aclB Carbon cycling Carbon fixation Escherichia coli F11 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 7.141881021 7.123535737 120606135 pimF Organic Remediation Aromatics Aromatic carboxylic acid Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 7.334289906 7.248644922 7.597890143 7.397893969 7.643677207 7.744959686 7.792327028 7.812663522 7.805197416 228774821 srt virulence surface protein Bacillus thuringiensis serovar tochigiensis BGSC 4Y1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus thuringiensis; 7.42865155 7.323087947 7.157343313 7.561822163 94968056 sigma_24 Stress Sigma factors Candidatus Koribacter versatilis Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 7.526261599 7.228401204 7.494199304 7.274145711 7.816141489 7.617295843 7.44218175 7.057715302 149188480 AceA Carbon cycling Carbon degradation others Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 7.505052112 7.351197775 198257539 mannanase Carbon cycling Carbon degradation Hemicellulose Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 7.916103311 7.757232012 7.865803397 7.528918632 7.774873786 7.482404983 7.652820125 123441049 pilin virulence pilin Yersinia enterocolitica subsp. enterocolitica 8081 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 7.172652642 7.112643135 7.123255789 6.635258943 7.557364677 7.129381149 6.770756111 7.081093846 35211071 ppx Phosphorus Phosphorus utilization Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 7.438231047 7.569453276 6.983568717 7.114128518 237799381 katE Stress Oxygen stress Pseudomonas syringae pv. oryzae str. 1_6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 7.91476462 7.664682486 7.350594239 7.348501953 7.961103055 7.824852106 7.83367806 7.724567042 7.601528485 118683525 bco Organic Remediation Aromatics Aromatic carboxylic acid Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 8.268726907 8.437659986 8.196627038 8.239818037 8.811050587 8.52947351 8.703303779 8.260965128 8.486835052 116697525 nifH Nitrogen Nitrogen fixation Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 7.487766066 7.493639374 7.647754619 7.815946928 7.30718403 7.31378329 7.769516944 8.001126431 218564196 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.459242543 7.230011187 8.183034151 7.534053388 8.097363725 7.322564227 7.296408954 148520701 catB Organic Remediation Aromatics BTEX and related aromatics Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 7.936988776 7.762198669 7.810178827 7.519210585 7.959559859 8.113051466 7.54715432 7.903687724 188027362 fimbriae virulence fimbriae Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 7.332185926 7.290845611 114763485 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.637157941 7.617552463 7.750190035 7.96779445 8.262817601 7.926396997 7.813734316 262202443 katE Stress Oxygen stress Gordonia bronchialis DSM 43247 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 7.795622547 7.582393385 7.621444268 7.298860522 7.410837477 8.157203344 7.244781251 7.298925288 170090830 ahpC Stress Oxygen stress Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 8.517228207 8.329678569 8.243953221 8.586716826 8.189706402 8.337425118 8.388634873 8.216884784 91190112 pstB Stress Phosphate limitation Vibrio alginolyticus 12G01 7.569111042 7.228423041 7.174688024 6.877130371 7.559922267 157322729 endochitinase Carbon cycling Carbon degradation Chitin Serratia proteamaculans 568 7.571815129 8.111754421 8.139732611 8.136452845 8.052771582 8.162610876 7.848934366 8.205149521 7.91455664 139478627 mer Metal Resistance Mercury uncultured actinobacterium superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 8.208710605 8.109360307 8.345574569 8.136119754 8.83237743 8.578777267 8.405743723 8.50049761 192291520 nhh Organic Remediation Aromatics Nitoaromatics Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.757386249 7.722297071 7.508656316 7.374177176 7.789335063 7.987739682 7.570245438 7.592420243 7.651492015 145046790 obgE Stress Radiation stress Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 6.975767717 7.400508676 3157706 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 7.118431509 6.777072753 7.237923095 7.066778048 6.908640127 7.693757046 7.209440009 7.374062237 116077533 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Streptococcus pneumoniae D39 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus pneumoniae; 7.14544697 6.961305364 126707708 nagI Organic Remediation Aromatics Aromatic carboxylic acid Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 7.979275818 8.004923752 7.783302659 7.85558657 7.933154042 7.94345398 7.858101133 7.629516829 29604753 tfdA Organic Remediation Aromatics Chlorinated aromatics Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 7.182931523 6.805368572 7.249214695 146188132 mer Metal Resistance Mercury Pseudomonas fluorescens SBW25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.873350344 7.632561215 7.570858599 7.705947494 7.888909995 7.854853084 7.29261497 32397235 sigma_24 Stress Sigma factors Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 6.879607183 6.953995473 7.29448814 7.050140583 6.828227895 7.797920389 7.123262619 7.295510884 7.501801735 116074383 sigma_70 Stress Sigma factors Synechococcus sp. RS9916 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.193733027 7.445885443 7.304707701 7.434436939 7.741858675 7.409902199 7.848915586 7.653753967 91689638 benAB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.345028365 7.268552613 7.548722967 7.744717176 7.133241764 8.031214843 7.254868855 7.400203078 7.81333842 209551998 pcc Carbon cycling Carbon fixation Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.431236456 7.480445246 7.926474206 7.824358909 7.957384634 7.981970419 8.079024868 8.117040258 8.194205079 147886260 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 7.383648628 7.661472042 7.82163658 8.172619135 7.146406895 7.253495475 7.421868576 7.708068952 133740622 aoxB Metal Resistance Arsenic Thiomonas sp. 3As superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas; 7.992756949 7.973458904 7.821903921 8.623887985 7.912013694 8.507904078 8.144706893 8.404318315 227504889 ahpC Stress Oxygen stress Corynebacterium striatum ATCC 6940 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium striatum; 7.601905331 7.387401997 7.470444093 7.391300635 7.398590981 73669862 proV Stress Osmotic stress Methanosarcina barkeri str. Fusaro superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina barkeri; 8.348498958 8.28851452 8.228370053 7.671218654 8.375907842 7.760030883 7.950950708 8.137937265 8.544660364 576783 PhaB Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 7.322082611 7.401046082 7.264104553 258515191 pstC Stress Phosphate limitation Desulfotomaculum acetoxidans DSM 771 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum acetoxidans; 7.499010163 7.906647519 7.510668803 7.701364599 7.853739761 7.848581006 7.018002059 7.868160876 225521006 sigma_24 Stress Sigma factors 'Nostoc azollae' 0708 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena azollae; 6.980401536 7.424824057 7.337044145 7.186781932 7.330285265 91795177 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.462889986 7.633122892 7.84121815 7.772769007 7.091431892 157913278 sigma_32 Stress Sigma factors Dinoroseobacter shibae DFL 12 6.887355676 6.947593341 6.827121082 6.830969344 6.632156141 7.013095624 7.095949244 68510314 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.339371431 7.675587057 7.735558251 8.018181952 7.571906987 8.125915641 7.887289078 7.787354046 32475715 dnaK Stress Heat shock Rhodopirellula baltica SH 1 7.339865458 7.397209413 7.296928162 6.837442785 7.279632479 7.703167771 7.158581395 7.38278377 206568929 pcaG Organic Remediation Aromatics Other aromatics Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 7.823640577 7.749196419 7.311565496 7.249754446 7.504446728 7.770706784 7.743453988 7.375189446 7.76818015 145215110 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 7.750133915 7.796770886 8.076243222 6.948348462 7.980719186 7.6570753 7.834442422 7.994631738 7.616526845 220935958 fnr Stress Oxygen stress Thioalkalivibrio sp. HL-EbGR7 7.773547515 7.47396062 7.402978982 7.330835997 7.294813388 237797385 iro virulence Pseudomonas syringae pv. oryzae str. 1_6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 7.080083745 7.347674263 7.408303878 7.19684794 7.634482452 7.344029135 6.870948586 7.569618713 7.867747274 148254827 linB Organic Remediation Pesticides related compound Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.377113376 8.002076864 7.844600386 7.94170219 8.426585524 8.286642311 8.137240402 7.785102338 7.905689909 191639526 ppx Phosphorus Phosphorus utilization Lactobacillus casei BL23 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus casei; 7.023041468 7.276779992 7.013925809 218754317 linB Organic Remediation Pesticides related compound Mycobacterium tuberculosis GM 1503 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 7.733239462 7.856498972 7.861951726 7.126497958 7.699867597 7.684349832 7.913326065 7.511621526 148512140 silC Metal Resistance Silver Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.45871276 7.600347615 7.499760699 7.147309031 7.368501367 7.724179647 7.690316703 7.219817172 77459202 xylC Organic Remediation Aromatics BTEX and related aromatics Pseudomonas fluorescens Pf0-1 7.268125831 7.039370052 56476759 Apc Organic Remediation Aromatics BTEX and related aromatics Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 8.064283683 7.881547734 7.539993261 7.77095759 7.593421339 7.208336736 7.576849785 58041829 xlnD Organic Remediation Aromatics Other aromatics Klebsiella pneumoniae 8.831733712 9.057385739 8.841906606 253571898 proV Stress Osmotic stress Bacteroides sp. 1_1_6 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 7.608368619 7.184783943 28855617 ppk Phosphorus Phosphorus utilization Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 7.806177377 8.326410851 7.966581599 8.040085342 7.94649977 7.674923324 8.006902248 7.655700144 82801427 alkB Organic Remediation Other Hydrocarbons bacterium alkW40 superkingdom:Bacteria; 7.697786335 7.658274433 7.411862992 8.146084903 7.996625272 8.054319782 8.085964663 188030493 vanA Carbon cycling Carbon degradation Others Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 7.593543972 7.415783966 7.188627693 7.272485346 7.34939228 7.601687728 7.310676895 7.437479546 160940964 CopA Metal Resistance Copper Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 7.049220247 7.25083194 6.828889107 6.661743604 109701909 ppx Phosphorus Phosphorus utilization Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 6.964016828 7.037180238 148261379 glnA Stress Nitrogen limitation Acidiphilium cryptum JF-5 7.724202252 7.435712831 8.090389166 7.742148582 7.908888136 7.777414075 7.763492201 89475634 nifH Nitrogen Nitrogen fixation Rhizobium leguminosarum bv. viciae superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.033846714 8.359819293 8.070719401 7.56779687 8.044700536 8.024774992 8.07944076 7.983786148 99030503 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 7.95643348 8.049255154 7.915497964 8.319016321 8.091523453 8.114703728 7.982599415 8.196710803 7.988315813 222354244 hao Nitrogen Nitrification uncultured bacterium superkingdom:Bacteria; 7.510465316 7.54519381 7.337508879 7.399099698 7.275377032 7.504412038 124514718 LPS_heptosyltransferase_EPS Bioleaching EPS Leptospirillum sp. Group II UBA 8.198885117 8.487925453 8.221005288 8.142577993 8.183899051 8.527831872 134300137 pstB Stress Phosphate limitation Desulfotomaculum reducens MI-1 7.604748857 7.266734229 7.165816077 7.267708171 7.214880676 7.496680396 7.082367326 7.337776981 227981154 ahpC Stress Oxygen stress Tsukamurella paurometabola DSM 20162 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 7.573675152 7.351904464 7.432902186 7.198949174 7.527996988 7.72634423 7.417380714 7.525338321 7.768340977 85375180 pcc Carbon cycling Carbon fixation Erythrobacter litoralis HTCC2594 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 7.369101747 7.149404647 94483091 arsB Metal Resistance Arsenic Ochrobactrum tritici superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum; 8.00815645 7.71546084 7.917800309 7.908524326 8.201380784 8.201127368 8.240616403 7.933454127 8.197772515 46200687 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 8.087956623 8.311418546 8.220957117 8.143238267 8.915319364 8.321009825 8.278000339 8.284054562 8.290197718 218988938 inv virulence invasion Salmonella enterica subsp. salamae serovar Sofia superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 7.179593054 7.013211745 7.333754863 8.867179175 8.599975777 8.726791898 8.095242184 7.524576041 7.793395 240102929 pstB Stress Phosphate limitation Thermococcus gammatolerans EJ3 7.550690992 7.688254318 7.599587373 6.920983095 7.346852314 7.519504062 7.461141792 7.237305943 7.33053597 219678861 nitA Organic Remediation Aromatics Other aromatics gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.192772866 7.076455885 6.790418021 7.015034697 6.762273 189422118 fnr Stress Oxygen stress Geobacter lovleyi SZ 7.578333716 7.588423366 7.642664778 7.32570609 7.521768334 7.800878941 7.963253894 8.109307424 8.359154174 33391405 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.326005627 7.204423349 7.229994379 6.975170535 7.082854601 7.704598465 72494275 proV Stress Osmotic stress Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus saprophyticus; 7.268025365 7.315174586 6.772081242 7.389345165 145299773 oxyR Stress Oxygen stress Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 8.239214421 8.268728936 8.273988207 7.991168377 8.121851368 8.153665576 8.429954168 8.261391508 118713204 atzC Organic Remediation Herbicides related compound Burkholderia cenocepacia MC0-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 7.765219883 7.60737884 7.491427732 7.730134634 7.979294399 8.134032965 7.707314936 7.56632425 7.690648517 77812811 nasA Nitrogen Assimilatory N reduction Shewanella putrefaciens CN-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella putrefaciens; 7.405141201 7.531839626 7.451508674 7.661742081 7.768951102 8.267080936 7.893701376 7.375342817 7.571536178 170767163 ppk Phosphorus Phosphorus utilization Escherichia albertii TW07627 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 7.565679885 7.288991124 7.519044436 7.759535228 7.678755271 7.659437389 7.640484576 196226771 sigma_70 Stress Sigma factors Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 7.992016745 7.917424289 8.0421721 7.454080549 7.997914998 7.707149066 8.148700481 8.307166616 7.758604962 119503630 gyrB other category gyrB marine gamma proteobacterium HTCC2080 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.118394693 7.346782376 7.089768108 118746435 hydrogenase Energy process Energy process Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 7.819817884 7.674307925 7.702244062 8.015593425 8.184807013 8.045187205 7.974795102 7.506441075 238783840 pstB Stress Phosphate limitation Yersinia bercovieri ATCC 43970 7.513375914 7.347328134 7.233085131 6.946075018 7.605567826 7.149527378 7.305817653 261252052 proX Stress Osmotic stress Vibrio orientalis CIP 102891 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 7.512402481 7.374787158 7.200407196 7.238361742 7.368754978 77163740 CopA Metal Resistance Copper Nitrosococcus oceani ATCC 19707 7.372142688 7.423739472 7.096290244 7.390418737 160917801 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.306495139 7.50365022 7.219263406 197754668 TerD Metal Resistance Tellurium Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7.035172261 7.161992591 194681629 iro virulence Proteus mirabilis HI4320 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 7.542310005 7.088485861 7.019058614 6.765778348 6.758301649 7.320499905 7.001012941 6.866485113 119860939 pstB Stress Phosphate limitation Borrelia hermsii DAH 6.718208139 7.139927303 7.03692985 156935297 endochitinase Carbon cycling Carbon degradation Chitin Enterobacter sakazakii ATCC BAA-894 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 7.416778802 7.428516406 7.817802068 7.507168347 7.428439291 8.113705848 7.392620441 7.21211081 7.368822443 68568547 AceB Carbon cycling Carbon degradation others Sulfolobus acidocaldarius DSM 639 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus;species:Sulfolobus acidocaldarius; 7.528377606 7.401429038 7.455045877 7.613012395 7.500529652 7.666199833 7.959602586 7.691109526 149230355 sigma_70 Stress Sigma factors Pedobacter sp. BAL39 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter; 7.029881465 7.21645608 6.840209884 6.889375508 84496095 glnA Stress Nitrogen limitation Janibacter sp. HTCC2649 8.294929326 8.012087098 7.664218735 8.042878359 8.000496382 7.932771022 8.100009159 8.092745324 7.494600918 126733304 hly virulence hemolysin Roseobacter sp. CCS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.902362444 7.826369383 7.782336118 7.734908563 7.574084764 98660686 ZntA Metal Resistance Zinc Pelotomaculum thermopropionicum SI superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Pelotomaculum;species:Pelotomaculum thermopropionicum; 7.441329061 7.449540248 6.819366287 7.038779236 7.542722643 7.401720437 7.422952979 119671242 proO Organic Remediation Aromatics Other aromatics Azoarcus sp. BH72 8.143596364 8.004629679 7.975042179 7.8446698 7.784340857 7.759143703 7.634380401 7.611795614 7.679670098 260417929 sigma_70 Stress Sigma factors Silicibacter lacuscaerulensis ITI-1157 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria lacuscaerulensis; 8.281959329 8.212835302 8.029056306 8.336349182 8.488390508 8.473212191 8.619271113 8.421931021 8.325952751 163746191 pcc Carbon cycling Carbon fixation Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 7.477618597 7.523244658 8.055379179 8.053080024 7.885385515 8.273564453 8.004319534 7.739348157 8.106826683 15616245 xylanase Carbon cycling Carbon degradation Hemicellulose Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 7.560830378 7.654141369 7.522926534 7.802058764 7.186952052 7.908440365 7.405443104 7.243639982 7.63751487 6690687 ureC Nitrogen Ammonification Rhodobacter sphaeroides superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 7.939042417 8.243953088 8.155750896 8.04525833 8.818505111 8.43269891 8.364584867 8.233459996 8.553886919 146278834 cytochrome Energy process Energy process Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 8.311296096 8.469512732 8.139897243 8.534459048 8.284976502 8.241703598 8.24495251 8.525002542 8.163114797 73659733 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. CBDB1 7.147235357 7.151907021 7.359893495 6.781557183 6.472774982 7.470336601 15074851 xylanase Carbon cycling Carbon degradation Hemicellulose Sinorhizobium meliloti superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium; 7.451312778 7.572097175 7.658550815 7.584657033 7.750511198 7.945764005 7.784380344 7.942148923 7.741372339 270010444 Tet Antibiotic resistance other Tribolium castaneum superkingdom:Eukaryota;kingdom:Metazoa;phylum:Arthropoda;class:Insecta;order:Coleoptera;family:Tenebrionidae;genus:Tribolium; 7.209418055 7.363787031 7.450135362 7.376406495 6.985725099 7.359085197 126133148 nagI Organic Remediation Aromatics Aromatic carboxylic acid Pichia stipitis CBS 6054 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Scheffersomyces;species:Scheffersomyces stipitis; 7.885285039 7.808798407 7.771215632 7.389723567 7.711495965 7.730197903 163751173 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Shewanella benthica KT99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella benthica; 7.752937251 7.653430675 7.290069888 8.161349303 8.050490911 7.975789834 8.03648332 259023627 fnr Stress Oxygen stress Rhodobacter sp. SW2 7.759029652 7.885818317 7.872942887 7.645184019 7.976527399 8.037790337 7.83138616 8.021207955 8.069923196 218222942 sigma_24 Stress Sigma factors Parabacteroides johnsonii DSM 18315 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides johnsonii; 8.151177172 8.105127997 7.684962198 8.258228874 8.094635184 8.114084179 8.180713916 188533196 ppx Phosphorus Phosphorus utilization Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 7.67801174 7.564367542 7.603755488 7.141070986 7.608615963 7.681990492 7.70551373 14523697 ZntA Metal Resistance Zinc Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 7.464986831 7.318682118 7.711026945 7.12374398 7.395033828 7.740796427 7.402745004 7.107760941 7.133083791 257454602 AceA Carbon cycling Carbon degradation others Enhydrobacter aerosaccus SK60 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Enhydrobacter;species:Enhydrobacter aerosaccus; 7.371685116 7.618039376 7.3934327 7.409951943 7.36649921 7.781824026 86554932 pstB Stress Phosphate limitation Synechococcus sp. JA-3-3Ab 6.987346473 7.342323056 7.160296461 6.74664283 6.830923607 7.270179399 6.977897607 7.19992348 247543597 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.211305802 7.38023045 218511010 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium etli Brasil 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 6.934424889 7.461788109 7.059324442 7.772651273 7.16396899 7.267969469 7.50004946 170681894 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 7.637484125 7.429452052 7.300511953 7.092916308 7.476045947 8.038282677 7.405269255 7.306959152 7.506585675 221726868 type_III_secretion virulence secretion Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.541435799 7.574817849 7.436988358 118466922 bphA Organic Remediation Aromatics Polycyclic aromatics Mycobacterium avium 104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 7.748612461 7.55136093 7.332080365 7.395279603 7.380697376 7.730965453 7.709369442 7.494860967 7.579792038 134053758 fnr Stress Oxygen stress Desulfotomaculum reducens MI-1 7.001925087 7.229763219 7.031605494 77978340 MFS_antibiotic Antibiotic resistance transporter Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 6.925704532 7.18791655 7.497112671 6.873898582 6.883226933 146403107 thioredoxin Bioleaching Sulphur Acidiphilium cryptum JF-5 7.799340024 7.339775399 7.193158102 7.203722994 7.293530542 7.950777244 7.304748318 7.308212361 256853611 glnA Stress Nitrogen limitation Enterococcus faecalis T8 7.466212737 7.81341823 7.404875251 7.511710464 7.452320012 16331384 clpC Stress Protein stress Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 7.293168824 7.584548873 7.051517359 149783387 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.064912429 7.269482649 7.473586698 7.349158465 7.139468491 7.671699697 6.984951748 7.333555725 7.067710678 206565477 TehB Metal Resistance Tellurium Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 7.819648285 7.68846873 7.58924567 7.394269677 7.949555978 7.599828838 7.690713442 7.653813351 150386243 proV Stress Osmotic stress Victivallis vadensis ATCC BAA-548 superkingdom:Bacteria;phylum:Lentisphaerae;family:Victivallaceae;genus:Victivallis;species:Victivallis vadensis; 8.25804745 8.126291712 7.396919909 8.146636676 7.882562403 7.471056038 8.289033755 184195180 MFS_antibiotic Antibiotic resistance transporter Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.765930831 7.404711099 7.672076787 8.271633863 7.879317953 8.522940306 8.429993018 7.928270065 110597374 CopA Metal Resistance Copper Chlorobium ferrooxidans DSM 13031 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium ferrooxidans; 7.901488003 7.691640337 7.013569186 7.339727849 7.37378087 159128197 iro virulence Aspergillus fumigatus A1163 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 7.243938333 7.411159347 7.305750114 6.859974521 6.760239089 7.667549899 73991335 mdlB Organic Remediation Aromatics Aromatic carboxylic acid Canis familiaris superkingdom:Eukaryota;kingdom:Metazoa;phylum:Chordata;class:Mammalia;order:Carnivora;family:Canidae;genus:Canis;species:Canis lupus; 7.399661925 7.409074737 7.275304825 7.04536722 7.062681502 7.355174916 7.407418487 7.222357774 255275019 ureC Nitrogen Ammonification Hyphomicrobium denitrificans ATCC 51888 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 7.479635657 7.62381126 7.31534025 7.097914439 7.075583966 76058412 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.56913655 7.372255349 7.397052373 7.304864493 7.663087657 7.920340734 7.507701686 7.280011638 7.392085864 28629805 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.302903195 7.516041981 7.359090652 7.230851692 7.689639279 7.813322245 7.3671675 7.573955025 40846343 phenol_oxidase Carbon cycling Carbon degradation Lignin Pycnoporus sanguineus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Pycnoporus; 7.485304784 7.416247415 7.082441409 7.617313649 30525486 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.538436149 7.836419869 7.472533798 7.176155496 7.171150223 7.612318432 7.299213782 7.430224245 7.751005699 160940390 atzA Organic Remediation Herbicides related compound Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 7.312972332 7.180196363 7.523641733 7.393578241 6.918338623 7.370575917 6.821721278 6.910436704 7.077291529 145213768 nahA Organic Remediation Aromatics Polycyclic aromatics Mycobacterium gilvum PYR-GCK 7.374107754 7.15352673 7.726737719 7.018488346 7.69135067 7.362002403 7.468606295 7.580454386 7.498753239 209906843 cda Carbon cycling Carbon degradation Starch Enterobacter cancerogenus ATCC 35316 7.584823368 7.570801864 7.480416255 7.766697283 7.765321374 7.977398968 7.670434946 7.552006193 7.831112518 167350342 glnA Stress Nitrogen limitation Caulobacter sp. K31 7.59664105 7.497865323 7.646467142 7.426166761 7.186988677 7.3689984 7.581441901 7.583080641 89321731 nhh Organic Remediation Aromatics Nitoaromatics Mycobacterium flavescens PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 7.635942923 7.850485166 7.994018856 7.877866848 8.17931356 8.092787932 8.125799008 8.012963077 8.062552142 16265023 pulA Carbon cycling Carbon degradation Starch Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 7.090442539 7.112650992 7.568800511 7.518509661 6.875823425 8.006858907 7.071987996 6.936850022 95928311 mer Metal Resistance Mercury Desulfuromonas acetoxidans DSM 684 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Desulfuromonadaceae;genus:Desulfuromonas;species:Desulfuromonas acetoxidans; 7.804991153 7.951008747 7.85436442 7.97313946 8.372845955 7.9668484 37787983 endolysin_transglycosylase Bacteria phage LYSIS Enterobacteria phage T1 order:Caudovirales;family:Siphoviridae;genus:T1-like viruses; 7.37110832 7.663233931 7.665630046 7.338590425 7.518698514 7.616025301 7.21090367 8.144159432 31620970 nifH Nitrogen Nitrogen fixation Paenibacillus durus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.733070104 7.284066774 7.162364239 7.202096142 7.239610175 7.637618611 7.412379687 7.525950126 7.414827223 126178055 Catechol Organic Remediation Aromatics Other aromatics Methanoculleus marisnigri JR1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanoculleus;species:Methanoculleus marisnigri; 7.66939591 7.702299104 7.686923542 7.730444075 7.010331108 8.164961186 7.467683333 7.622006356 7.743818593 13898415 dsrA Sulphur sulfite reductase uncultured napthalene mineralizing bacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 7.636828797 7.388845456 7.480325143 7.394225628 7.402797686 7.296132046 7.20774343 7.520896398 118424433 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.532869439 7.492062895 7.747176143 7.60900733 7.886277482 7.67544872 7.721351658 7.710592704 7160913 nirK Nitrogen Denitrification uncultured bacterium wB57 superkingdom:Bacteria; 7.706428389 7.746739655 7.654354523 6.955347762 7.835389328 7.770298948 7.625242021 7.724360544 7.785325823 30269617 nasA Nitrogen Assimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.277804263 7.371095825 241867668 ppk Phosphorus Phosphorus utilization Sphingobacterium spiritivorum ATCC 33861 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium;species:Sphingobacterium spiritivorum; 7.377916333 7.30697474 7.375359142 7.317633969 7.600815064 134299385 CadA Metal Resistance Cadmium Desulfotomaculum reducens MI-1 7.927286952 8.049735895 7.753092572 7.863417127 8.367994154 8.176883302 7.955565978 7.455279414 7.924802003 4586273 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Alcaligenes faecalis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes; 7.730162882 7.347659388 7.51858247 7.29243832 7.44223388 7.365152416 6.891245068 7.232617677 126707971 atzA Organic Remediation Herbicides related compound Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 7.803405322 7.618659001 7.155219922 7.275409528 7.276183341 7.876619656 7.472097593 7.014858136 254497410 Mex Antibiotic resistance transporter Legionella drancourtii LLAP12 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella;species:Legionella drancourtii; 8.018492452 7.860806577 7.69348555 7.791384467 7.752591462 7.696529435 7.72148648 262276591 phoB Stress Phosphate limitation Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;species:Grimontia hollisae; 7.248379783 7.146116769 7.26614641 7.422648866 7.293561034 7.339295988 253575417 ahpC Stress Oxygen stress Paenibacillus sp. oral taxon 786 str. D14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 7.288213624 6.905148169 88180301 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 7.374314648 7.294186946 7.046363256 7.146387852 7.622391197 7.363129405 6.872150728 7.257068596 262276583 pstB Stress Phosphate limitation Grimontia hollisae CIP 101886 7.6148216 7.270143922 7.368127556 116107387 gyrB other category gyrB Lactococcus lactis subsp. cremoris SK11 7.505092147 7.668588037 7.431932369 7.527326338 227243653 MFS_antibiotic Antibiotic resistance transporter Sphingobacterium spiritivorum ATCC 33300 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium;species:Sphingobacterium spiritivorum; 7.569991186 7.145778976 7.201251496 7.036179236 14021703 catB Organic Remediation Aromatics BTEX and related aromatics Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 7.447439112 7.404324742 7.106261303 7.262204503 7.73554176 7.360125049 6.904839428 7.205724331 150956672 arsB Metal Resistance Arsenic Klebsiella pneumoniae subsp. pneumoniae MGH 78578 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 7.693666471 7.754623384 7.424261312 7.902684526 7.636397235 7.766479165 7.333751951 7.62826629 111071958 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.974577109 8.20553178 7.952759808 8.005117575 8.534228772 8.479986052 8.54685604 8.16361749 8.241377408 19918481 phoA Stress Phosphate limitation Methanosarcina acetivorans C2A superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina acetivorans; 8.252254652 7.776916262 7.784283496 7.558627961 7.803033374 7.919053063 8.06932405 7.50969785 7.957535121 27379067 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.460649017 7.545406531 7.639393303 7.720198087 7.825362439 48157 mercury_resistant_gene Bioleaching Metal Resistance Acidithiobacillus ferrooxidans 7.244431568 7.303291577 7.112231701 7.171094434 7.576895449 7.293364895 7.514922401 7.717469732 158514506 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.811468425 7.544677592 7.601006482 7.050312865 7.156869751 643613 CopA Metal Resistance Copper superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 7.424019531 7.124874389 7.16079024 8515793 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 7.313686222 7.49462402 7.611438626 7.496150837 7.201546238 7.660417943 7.080414384 7.151098787 7.06170923 58264670 tfdA Organic Remediation Aromatics Chlorinated aromatics Cryptococcus neoformans var. neoformans JEC21 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Tremellomycetes;order:Tremellales;family:Tremellaceae;genus:Filobasidiella;species:Filobasidiella neoformans; 7.478723419 7.437717795 7.278492598 7.290105409 114773477 gyrB other category gyrB alpha proteobacterium HTCC2255 7.63092659 7.847755184 7.307518257 7.650534808 7.42179765 7.666917552 184197107 CopA Metal Resistance Copper Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.753943703 7.447242098 7.236435253 7.091294053 7.253278223 7.575459776 7.312591767 7.372270916 161392520 sigma_70 Stress Sigma factors Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 7.12272289 7.355860647 6.888347776 7.487932095 6.917122472 6.735696179 117647766 pstC Stress Phosphate limitation Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 7.261585848 7.255623237 7.092461734 6.815531205 7.507664567 11037226 Catechol Organic Remediation Aromatics Other aromatics Agrobacterium tumefaciens 7.06124702 7.138946472 7.201784345 7.305701973 6.82453447 6.862956183 7.213045958 7.207691173 257066864 pstB Stress Phosphate limitation Anaerococcus prevotii DSM 20548 7.084639588 7.088083313 158328839 SMR_antibiotics Antibiotic resistance transporter Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 7.738354199 7.70739623 7.387534395 7.570379237 7.491452685 7.560833822 7.450106175 7.402647986 7.337074183 125973837 dnaK Stress Heat shock Clostridium thermocellum ATCC 27405 7.581740652 7.601649278 7.530774634 7.282304079 7.464436017 7.660256768 7.651076959 7.417767979 7.614163647 188030601 gyrB other category gyrB Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 7.785313053 7.863244159 7.417883708 7.762645539 7.900713694 7.958973275 7.696166423 7.860165441 7.373002159 88184599 endochitinase Carbon cycling Carbon degradation Chitin Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 7.611724486 7.244590766 7.369256761 7.451525332 7.928490199 8.299694578 7.952884002 7.721943316 7.756133453 255262376 glnA Stress Nitrogen limitation Thalassiobium sp. R2A62 7.623417497 7.381895062 7.777706788 7.391642985 7.935613981 7.672257116 7.232008965 31747781 nif_II Bioleaching Nitrogen Leptospirillum ferrooxidans 7.58336305 7.55081118 7.09782702 7.435375148 7.770857787 7.541607569 7.379988558 7.453681786 83839281 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 7.299962615 7.269070928 7.369564845 227237880 pstA Stress Phosphate limitation Mobiluncus curtisii ATCC 43063 7.938985265 7.977287981 7.652411538 7.6589339 8.256494269 8.102504516 7.915500852 8.021653119 19551632 ZntA Metal Resistance Zinc Corynebacterium glutamicum ATCC 13032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 7.916167255 8.059847773 7.826633712 7.871583039 8.194350194 7.934708706 7.95045945 7.931517414 7.937242511 150027798 gyrB other category gyrB Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 7.370215562 7.82092004 7.808153803 9255865 exaA Organic Remediation Chlorinated solvents Ralstonia eutropha superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 7.811264416 7.634807645 7.443452156 7.72426071 7.601856043 7.770514617 7.683143232 7.691313491 33391397 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.668492207 7.411497199 7.415065911 7.006157141 7.118575302 7.786029045 7.655624644 7.292932947 7.302010799 164605317 hao Nitrogen Nitrification planctomycete KSU-1 7.518980626 7.399122933 7.812014963 7.527404791 7.499791086 24460037 cpnA Organic Remediation Other Hydrocarbons Comamonas sp. NCIMB 9872 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 8.260322466 7.929740328 8.023071834 7.873218976 7.850992899 23296080 dnaK Stress Heat shock Aquifex pyrophilus 8.308956026 8.185099082 7.98176557 8.19969537 7.537049765 7.872810549 7.628083128 7.870784232 126639826 sigma_32 Stress Sigma factors Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 7.908012445 7.422679252 7.359690472 7.238271893 7.671828031 7.223088115 7.036230364 7.323235027 154089165 pcc Carbon cycling Carbon fixation Parabacteroides merdae ATCC 43184 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides merdae; 7.605761757 7.390344118 7.113048632 7.201377823 7.495593342 84496410 SMR_antibiotics Antibiotic resistance transporter Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 7.841240328 7.745864189 7.941799272 7.247217338 8.022309497 7.849647624 7.60514611 7.773382283 7.644189597 153797381 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Actinomyces odontolyticus ATCC 17982 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces odontolyticus; 7.501372385 7.541792085 7.177956017 7.776465774 7.712896159 7.418609472 7.532548141 212530084 BpH Organic Remediation Aromatics Aromatic carboxylic acid Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.668234419 7.037240162 7.801142591 8.369834489 7.381319424 8.127116244 7.848309794 8.441011425 113955459 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Synechococcus sp. CC9311 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.825787478 8.183560167 8.12379572 7.805056354 8.218269827 8.02619384 8.286853744 8.197287045 8.263162165 208009652 pimF Organic Remediation Aromatics Aromatic carboxylic acid Aliivibrio salmonicida LFI1238 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Aliivibrio salmonicida; 7.41647581 7.223074695 7.380307283 6.696229053 6.801105269 7.395001302 6.874108072 7.032701532 7.137283784 134079427 ahpC Stress Oxygen stress Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 7.568320271 7.524015224 7.630067756 6.982245173 7.383268262 7.705362228 7.269753919 7.498522315 7.162165144 29466084 norB Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.574821274 7.340556982 7.407016413 402288 catechol_B Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.171249772 7.358061887 7.202405275 6.890222785 6.790611129 7.411626985 7.204010636 6.915517162 7.534139846 259021290 fnr Stress Oxygen stress Rhodobacter sp. SW2 7.409377854 7.540249834 7.479273087 7.26830655 7.596967607 7.811533046 7.516996187 7.593849933 7.681860988 104781851 SmtA Metal Resistance Miscellaneous Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 7.371625205 7.420729903 7.797999925 7.621735666 7.564625712 8.080292528 7.654479078 7.726354906 7.975048599 253826081 endochitinase Carbon cycling Carbon degradation Chitin uncultured bacterium 7.379055654 7.932900882 8.189219963 8.323651801 7.74530481 8.063782628 7.806230411 7.766768356 8.037802488 37523893 SMR_antibiotics Antibiotic resistance transporter Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 7.221173067 7.253925274 6.966198796 7.662333125 239805012 fnr Stress Oxygen stress Variovorax paradoxus S110 7.792300497 7.467635091 7.276884 7.208707548 7.68210744 147735777 ChrA Metal Resistance Chromium Thermotoga petrophila RKU-1 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga;species:Thermotoga petrophila; 7.128835877 7.12824233 149142712 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.820150849 7.49557227 7.469063296 7.620934916 7.378865586 7.702049203 7.612557281 7.645754602 7.455644146 19421902 PceA Organic Remediation Others Desulfitobacterium hafniense 7.506349859 7.498589645 7.447082848 7.070998024 7.008932071 7.507464523 7.208959752 7.162443369 260889957 nplT Carbon cycling Carbon degradation Starch Leptotrichia hofstadii F0254 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteria;order:Fusobacteriales;family:Fusobacteriaceae;genus:Leptotrichia;species:Leptotrichia hofstadii; 7.51839588 7.227551517 7.545728442 7.09047445 7.524003586 7.183070483 7.008872398 196196149 pstA Stress Phosphate limitation Alcanivorax sp. DG881 7.356365076 7.372445103 7.312202225 7.434724398 226835506 pilin virulence pilin Acinetobacter sp. ATCC 27244 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 6.947035501 6.963576986 6.615772028 7.367154454 163733957 fnr Stress Oxygen stress Roseobacter litoralis Och 149 7.383124878 7.483504668 7.354278122 7.307519441 7.496926415 7.476688041 7.61639103 7.487333385 161159547 sigma_24 Stress Sigma factors Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 7.61182408 7.423130475 7.189884423 7.155176558 7.460525024 7.300346401 169764295 CadA Metal Resistance Cadmium Aspergillus oryzae RIB40 7.737698231 7.279988692 7.492456196 7.495721419 7.767858668 7.382399827 7.479813191 155964469 nasA Nitrogen Assimilatory N reduction uncultured marine bacterium superkingdom:Bacteria; 7.230513158 7.340506793 7.002153862 109899896 hly virulence hemolysin Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 7.390099495 7.439073741 7.223817261 7.355412534 7.769302026 7.387338838 6.988687931 7.74322627 170936379 nagG Organic Remediation Aromatics Aromatic carboxylic acid Podospora anserina superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora; 7.93539191 7.564656902 7.33683075 7.668166891 7.532603204 8.080789442 7.561459782 7.288890143 7.402110462 31541403 hrcA Stress Heat shock Mycoplasma gallisepticum R superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Mycoplasmatales;family:Mycoplasmataceae;genus:Mycoplasma;species:Mycoplasma gallisepticum; 7.16626355 7.117482305 71740300 TerC Metal Resistance Tellurium Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 7.407580014 7.582999982 7.379277179 7.078388602 7.859977132 7.339047113 7.108116151 145243164 endochitinase Carbon cycling Carbon degradation Chitin Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.601640598 7.73400014 8.234255866 7.453013167 7.713480427 7.861286873 7.468010036 7.52517031 7.828578025 116104120 amyA Carbon cycling Carbon degradation Starch Lactobacillus casei ATCC 334 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus casei; 7.874687625 7.599208396 7.474929635 7.514485915 7.54729233 7.827004233 7.703564178 7.627026827 7.49445602 158510468 nifH Nitrogen Nitrogen fixation Candidatus Desulfococcus oleovorans Hxd3 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus;species:Desulfococcus oleovorans; 8.062948855 8.166517428 7.732275038 7.959734558 7.885298454 7.682407892 7.746929238 7.808766213 91781859 katE Stress Oxygen stress Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.366676459 7.162007758 7.116700343 7.110480995 54649960 alkB Organic Remediation Other Hydrocarbons Gordonia sp. TF6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 7.177107705 7.420586892 7.230874751 6.877961406 7.290101615 7.740351033 7.588053231 7.639805994 73697246 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 6.769453727 7.319642362 189341579 SMR_antibiotics Antibiotic resistance transporter Chlorobium limicola DSM 245 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium limicola; 7.453203489 7.714855585 7.424797915 7.477570343 7.681187033 8.241057358 7.770811222 7.552003272 7.331947609 164688723 dsrB Sulphur sulfite reductase Clostridium bartlettii DSM 16795 7.322289258 7.125375739 7.050563272 6.491525214 7.371636794 229377303 MFS_antibiotic Antibiotic resistance transporter Oxalobacter formigenes HOxBLS superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Oxalobacter;species:Oxalobacter formigenes; 7.341478294 7.295906754 7.392861567 6.843017507 7.391056021 7.502423 7.171211489 7.449223165 71729546 oxyR Stress Oxygen stress Xylella fastidiosa Ann-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xylella;species:Xylella fastidiosa; 7.237071368 7.454748505 7.561211039 7.13566422 7.420966037 254521656 fnr Stress Oxygen stress Stenotrophomonas sp. SKA14 7.030965803 7.139369814 7.311207061 171910184 Mex Antibiotic resistance transporter Verrucomicrobium spinosum DSM 4136 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Verrucomicrobium;species:Verrucomicrobium spinosum; 7.864418297 7.718374708 7.805326391 7.959610998 8.163741808 7.923649562 8.094976879 8.049827094 8.173792889 187975928 ara_fungi Carbon cycling Carbon degradation Hemicellulose Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7.298323726 7.873075632 7.50640874 7.445936622 8.028557622 7.870083463 7.774785865 7.457557198 217413456 CopA Metal Resistance Copper Bifidobacterium gallicum DSM 20093 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 7.572392745 7.945516287 7.972752776 7.653666508 7.879293534 7.944448105 7.660962677 7.979499863 7.707758287 86741584 SMR_antibiotics Antibiotic resistance transporter Frankia sp. CcI3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 7.607220761 7.390280389 7.202264267 7.543016815 7.368486116 7.625160454 7.287962343 7.552669044 39575365 pstA Stress Phosphate limitation Bdellovibrio bacteriovorus HD100 7.428856916 7.323690173 7.647416551 8.045883531 6.930084405 8.19636513 7.559140094 7.660401736 42521961 Arylest Organic Remediation Aromatics Other aromatics Bdellovibrio bacteriovorus HD100 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 7.827037915 7.674138707 7.486253073 7.379808725 7.697969407 7.835531291 7.623269279 7.576260887 46449652 atzA Organic Remediation Herbicides related compound Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough 7.649595752 7.946347119 7.742630217 7.800244068 7.675961447 7.602786151 7.772031855 7.762848928 7.484965579 46447133 dnaK Stress Heat shock Candidatus Protochlamydia amoebophila UWE25 7.420273225 7.624233685 7.326389404 7.226809971 7.401850081 7.717880412 7.390468555 7.059050881 229003837 phoA Stress Phosphate limitation Bacillus mycoides Rock1-4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus mycoides; 7.562040182 7.474262212 7.913619392 7.769543239 7.913605735 8.215403327 7.82962474 85775292 alkK Organic Remediation Others Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 7.257707403 7.332357816 224819721 pstC Stress Phosphate limitation Natrialba magadii ATCC 43099 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natrialba;species:Natrialba magadii; 9.655787384 9.616787129 9.458024372 9.831268293 9.699322137 10.19600173 9.891306433 9.917063724 9.94798014 120599662 AceA Carbon cycling Carbon degradation others Shewanella sp. W3-18-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 7.426989548 7.355318474 227237191 phoB Stress Phosphate limitation Anaerococcus lactolyticus ATCC 51172 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Anaerococcus;species:Anaerococcus lactolyticus; 7.445065624 7.233263116 7.074060324 7.1159497 6.866542661 7.43864844 7.266688063 6.893267819 157285458 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.183964638 7.281591754 206592694 alkK Organic Remediation Others Ralstonia solanacearum IPO1609 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 7.375823702 7.392540531 7.485870098 6.943593857 7.300260726 7.48648705 7.549578287 7.51903659 7.101224683 229097302 proV Stress Osmotic stress Bacillus cereus Rock3-29 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 8.057581099 7.789090115 7.963408993 7.962678613 8.092259193 8.154830406 8.440998037 8.151456664 148260123 NADH_quinone_oxidoreductase Bioleaching Electron transport Acidiphilium cryptum JF-5 8.019626878 7.65940966 8.045255427 7.884012659 7.714201567 7.736003112 7.674719816 7.328880864 169244308 silC Metal Resistance Silver Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 6.990451079 7.41422403 7.271619613 6.978850557 7.783581321 116333349 ppx Phosphorus Phosphorus utilization Lactobacillus brevis ATCC 367 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus brevis; 8.795704383 8.494829179 8.155818712 8.520178853 8.529769106 8.319984316 8.459633277 8.624751436 8.43523782 110648432 ppk Phosphorus Phosphorus utilization Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 8.054431193 8.268704561 8.171654036 7.341556066 8.187343856 7.86717866 8.234884548 8.17849326 8.331011082 197767945 ppx Phosphorus Phosphorus utilization Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 8.068719716 8.112076915 8.334956425 7.400026903 8.205225997 7.912969942 7.97302067 8.213490487 7.4692725 40431 B_lactamase_A Antibiotic resistance Beta-lactamases Citrobacter koseri superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter; 7.216903567 7.250710455 7.089719927 7.018253865 6.926638499 7.317099833 7.118815413 7.023140756 6.95064539 145303359 sigma_70 Stress Sigma factors Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 7.224517682 7.5852984 7.796868441 7.130293082 7.634115718 7.423474379 7.583289452 7.069830963 209522256 exaA Organic Remediation Chlorinated solvents Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.263840217 7.580614876 7.573575312 7.238172805 7.827575958 7.131400985 7.320739313 91688639 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 6.954868214 7.159688056 7.713382658 7.636053665 7.399839674 7.631432911 7.159748907 7.485732789 7.760998867 67901394 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.123502282 7.432490917 7.09252014 7.164057316 7.315953117 7.199375033 7.280127063 198257388 ara Carbon cycling Carbon degradation Hemicellulose Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 7.936899851 7.842541122 7.395646991 7.431981678 7.512118373 7.835229739 7.451991992 7.892427809 126628739 obgE Stress Radiation stress Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 7.61112553 7.377835055 7.579952836 7.146653175 7.554044651 219544734 pstC Stress Phosphate limitation Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 7.056926272 6.935832782 260769587 hly virulence hemolysin Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 7.629558555 7.488011811 7.686318362 7.736906119 7.804798336 7.921736869 7.818331299 7.866406134 7.886621176 51893815 sigma_24 Stress Sigma factors Symbiobacterium thermophilum IAM 14863 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVIII. Incertae Sedis;genus:Symbiobacterium;species:Symbiobacterium thermophilum; 7.315399282 7.204641093 7.034336251 7.393769448 7.173297349 7.151996873 157084095 CopA Metal Resistance Copper Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 7.50454473 7.230821668 7.393838165 7.146494951 7.353254814 7.842774768 7.597766269 7.343410133 7.339246044 116694821 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 7.769169381 7.589051429 7.934165448 7.702847061 7.899900341 8.265562107 7.532795145 7.896036712 7.548117553 124027519 pstB Stress Phosphate limitation Hyperthermus butylicus DSM 5456 7.199817757 7.531562372 7.106925475 7.387322546 7.226773719 7.543577852 7.645525848 167355971 proV Stress Osmotic stress Shewanella halifaxensis HAW-EB4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella halifaxensis; 7.267474687 7.102466164 7.2920137 7.120303591 6.991573811 269829984 pstC Stress Phosphate limitation Vibrio alginolyticus 40B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 7.745412416 7.692614409 7.598608214 7.35337196 8.031680216 7.703017137 8.367409353 7.500068031 7.952248342 187978639 exoglucanase Carbon cycling Carbon degradation Cellulose Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7.636294254 7.358007256 7.682655554 7.086835448 7.368382238 7.58871035 7.49777412 95111175 nitro Organic Remediation Others Pseudomonas superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae; 8.258940306 8.2466476 8.019771907 8.054409266 8.189341414 8.15098043 8.130503526 7.883094091 7.631420337 153829332 CopA Metal Resistance Copper Vibrio cholerae 623-39 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 7.324244446 7.354871102 7.337333543 7.812753184 7.460319305 7.429986667 7.379490751 17133708 pstB Stress Phosphate limitation Nostoc sp. PCC 7120 7.355304644 7.230188817 269833274 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Vibrio harveyi 1DA3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 7.894818126 7.710021312 7.841694315 6.957229395 7.721663913 259030634 AceA Carbon cycling Carbon degradation others Mesorhizobium opportunistum WSM2075 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 8.51705992 8.828918802 8.437972354 7.977387555 8.449167868 8.67934639 8.714598717 8.770576252 8.447619155 90104806 phn Organic Remediation Herbicides related compound Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.642534063 7.3695417 7.46052856 7.720334313 7.920715494 7.777753546 7.637566782 7.4415424 83571901 pstB Stress Phosphate limitation Moorella thermoacetica ATCC 39073 7.307012765 7.280706051 6.909456044 7.486295189 7.759475665 7.59917263 7.215339107 119876618 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 7.944897959 7.97435278 7.804826486 7.8903037 8.234304662 7.963352516 8.301266915 8.032761306 8.245699364 73538090 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.879557359 7.636498661 7.987451723 7.261691707 7.751566592 7.986889489 7.6689529 7.533988684 7.613236433 48477605 glnA Stress Nitrogen limitation Picrophilus torridus DSM 9790 7.614141013 7.401990303 7.070399651 7.224805998 7.143039363 7.727381183 7.529236813 7.230794603 7.577008496 91976621 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.442387118 7.905977677 8.017463287 7.506295197 7.541088844 7.945337773 7.671204287 8.026950451 7.757815848 145223455 cadBD Metal Resistance Cadmium Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 7.605928614 7.224670082 6.874148911 6.80252244 7.384365111 7.215085497 7.046723387 7.539957502 161394367 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 7.746585349 7.592941514 7.336760782 6.946199966 7.511148009 7.667437895 7.616010619 7.689189208 7.523711872 53688476 ZntA Metal Resistance Zinc Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 7.452484648 7.277017474 7.553680437 7.443270583 7.146997774 7.482591496 12667676 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium UMTRAdsr624-16 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 7.963646409 7.318262656 7.170868272 7.374511317 6.996200216 7.740556951 7.537712534 7.100804431 7209204 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 7.426093984 7.596053361 7.482425744 7.086811775 7.297160975 7.471738368 7.277547133 18034347 dsrA Sulphur sulfite reductase Desulfobulbus elongatus superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfobulbus; 7.370559165 7.553696105 7.867320656 7.800747048 7.321005871 7.832915998 7.461073709 7.037909296 66769849 ArsC Metal Resistance Arsenic Xanthomonas campestris pv. campestris str. 8004 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 7.858106449 7.646207643 7.702501004 7.567852851 7.897561256 7.842928618 8.123728039 8.18152983 7.734446475 238059353 sigma_24 Stress Sigma factors Micromonospora sp. ATCC 39149 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 8.236962089 8.208060088 8.24039411 7.917309277 8.305319645 8.084665754 8.129738549 8.138606871 114763240 pulA Carbon cycling Carbon degradation Starch Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.132634142 7.124300471 7.434434986 7.505212586 6.989769258 7.513921418 7.095063404 7.66239753 7.455359212 151561149 Tet Antibiotic resistance other Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 7.97654242 8.014378958 8.477784424 8.267139985 8.286790437 8.879813558 8.090507155 8.046640236 7.958527819 52425407 aclB Carbon cycling Carbon fixation Mannheimia succiniciproducens MBEL55E superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Basfia;species:Mannheimia succiniciproducens; 7.214632504 7.006643789 7.106501285 6.536715153 7.401450179 2196824 gyrB other category gyrB Shewanella algae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 7.716755566 7.599781561 7.622553654 7.363551067 7.118804036 7.448008771 7.342501094 7.401188552 111617624 nagG Organic Remediation Aromatics Aromatic carboxylic acid Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 7.666552356 7.456468924 7.455464973 7.407407327 7.432500616 8.011150306 7.829074822 7.558722371 7.771214622 262221752 proV Stress Osmotic stress Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;species:Grimontia hollisae; 8.062727868 7.824190198 7.65090766 7.839824421 7.606861094 8.070446017 7.526545282 7.704501061 7.727293876 156053451 ahpF Stress Oxygen stress Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 8.231397723 8.074823879 8.169274594 7.407111397 8.19870184 7.811416687 7.88708749 7.619628608 8.320358793 126707800 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Sagittula stellata E-37 7.674825195 7.748777767 7.485495493 7.4782546 7.641713739 7.866558561 7.437029846 7.373493825 7.853554013 119868341 phtA Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium sp. KMS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.386846985 8.204074503 8.014558137 8.35737231 8.595149914 8.407125296 8.628717253 8.337145223 8.755520738 225209151 glnA Stress Nitrogen limitation Coprococcus comes ATCC 27758 7.789446913 7.734089476 7.250037528 7.193670831 7.261972399 7.547277933 7.421893917 7.378542365 261213046 endochitinase Carbon cycling Carbon degradation Chitin Vibrio sp. RC341 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.77694899 7.438059701 7.74370865 7.25797302 7.54330273 7.193250676 7.193196738 7.26565462 15898177 AceB Carbon cycling Carbon degradation others Sulfolobus solfataricus P2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus;species:Sulfolobus solfataricus; 7.640115603 7.581262873 7.719806719 7.328947226 7.77634392 7.784497781 8.062986844 8.172894826 7.950886329 183178657 pcc Carbon cycling Carbon fixation Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 7.702437741 7.144131488 7.696440844 7.603796736 108862034 helicase_family_4 Bacteria phage REPLICATION Enterobacteria phage K1-5 order:Caudovirales;family:Podoviridae;genus:SP6-like viruses; 7.314994624 7.425665526 6.991714251 7.397943817 7.575346306 7.158062095 7.27214286 161787682 sigma_70 Stress Sigma factors Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 7.866492795 7.769811731 7.779632903 7.509817942 7.881846283 7.878604707 7.977899152 7.89917102 7.637769076 189419949 pstB Stress Phosphate limitation Geobacter lovleyi SZ 7.450524028 7.040123758 6.898369052 7.514423386 28272440 amyA Carbon cycling Carbon degradation Starch Lactobacillus plantarum WCFS1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus plantarum; 7.07535174 6.963928569 6.878810072 119884087 TehB Metal Resistance Tellurium Salinispora arenicola CNS205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 7.672959005 7.556597138 7.727898139 7.40420777 7.302992313 7.784225038 7.645546147 7.772675068 7.482697519 66394679 terminase_large_subunit Bacteria phage REPLICATION Staphylococcus phage X2 order:Caudovirales;family:Siphoviridae;species:Staphylococcus phage 53 sensu lato; 7.642659716 7.823068767 7.792094217 7.768489831 8.111467139 8.16332434 8.513281867 8.373129337 7.899910856 206595820 alkK Organic Remediation Others Ralstonia solanacearum IPO1609 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 7.568628823 7.668862576 7.666143593 7.000181055 7.366111558 7.65597986 7.715976215 7.501325711 148261906 glycosyl_transferase_EPS Bioleaching EPS Acidiphilium cryptum JF-5 7.659721996 7.59721546 6.924719198 7.516585296 7.622074219 7.58719433 7.488032434 29832818 TerC Metal Resistance Tellurium Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 7.926348508 7.953683713 7.88448894 8.237149842 8.003579052 7.912723454 8.05601591 190685366 atzA Organic Remediation Herbicides related compound Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 7.320602205 7.283887685 7.707657231 7.681848026 7.834128171 7.827024266 7.786244638 7.853913508 110612665 gyrB other category gyrB uncultured bacterium superkingdom:Bacteria; 7.154494562 7.095041367 7.148397781 6.835842942 7.478342277 110679542 ChrA Metal Resistance Chromium Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 7.13037633 7.532200881 7.650238271 7.352741375 7.478283003 7.714102446 7.652828971 7.717908172 7.471131557 194332883 dsrA Sulphur sulfite reductase Prosthecochloris aestuarii DSM 271 7.426962224 7.289470749 7.427991018 7.259419845 7.040928442 7.619034944 7.009626048 7.307656817 7.295816912 223887052 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.095370417 7.072668071 7.089568655 6.428298858 7.518855592 150396237 SMR_antibiotics Antibiotic resistance transporter Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 7.482982331 7.166454838 6.983057899 7.336001928 7.480937765 7.139288372 7.256393113 28316382 vdh Carbon cycling Carbon degradation Others Sphingomonas paucimobilis superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 7.037350044 7.238748412 7.482093532 7.488780734 6.695901266 7.30002695 7.189434417 7.071141293 70930919 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.175592608 6.970122533 6.873596874 7.340376438 7.102906395 7.449527638 24375630 cytochrome Energy process Energy process Shewanella oneidensis MR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella oneidensis; 7.169526836 7.000239126 218509563 merB Metal Resistance Mercury Rhizobium etli Brasil 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.851198768 7.941208989 7.855229909 7.954357878 8.312570919 8.2298048 8.410141487 8.136114709 8.31044 159528135 CadA Metal Resistance Cadmium Fluoribacter dumoffii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Fluoribacter; 7.439697111 7.449539552 7.41098741 7.150226087 7.257520142 19168744 ahpC Stress Oxygen stress Encephalitozoon cuniculi GB-M1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Microsporidia;family:Unikaryonidae;genus:Encephalitozoon;species:Encephalitozoon cuniculi; 8.521059307 8.028676631 8.246316195 8.004327581 7.538275436 7.99406602 8.001984754 7.729133498 7.401665034 260767495 proX Stress Osmotic stress Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 7.400909703 7.085837965 238722423 pap virulence adhesin Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 7.69904307 7.759497149 7.910512484 7.667558764 8.007473029 8.221212847 7.916431121 8.10431272 125498318 TehB Metal Resistance Tellurium Streptococcus sanguinis SK36 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus sanguinis; 7.226914523 7.044122779 17826937 pheA Organic Remediation Aromatics Other aromatics Burkholderia kururiensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.51918529 7.611469891 7.313538901 7.072071353 7.33662741 7.566829265 7.351707361 7.336147164 7.474095768 225100929 AceA Carbon cycling Carbon degradation others Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.983869033 7.133254847 7.214420781 7.110446111 7.316984249 7.185717752 7.157992466 7.005042566 210074281 nagG Organic Remediation Aromatics Aromatic carboxylic acid Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.221291911 7.351391606 34497235 alkK Organic Remediation Others Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 8.223415851 8.190092239 7.957976295 7.920732253 8.359795745 8.237173193 8.164265356 7.996307751 8.110507935 32308019 narG Nitrogen Denitrification uncultured bacterium 6.995557598 7.2793746 7.285246863 7.1574207 7.070065288 7.895081593 7.191893018 7.283326438 114771446 AceA Carbon cycling Carbon degradation others alpha proteobacterium HTCC2255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 6.959437519 7.018258374 6.925145288 6.665477574 7.016350197 6.963394296 7.678883017 154173683 sigma_70 Stress Sigma factors Campylobacter curvus 525.92 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter curvus; 7.340055424 7.208083978 86164335 grpE Stress Heat shock Marinomonas sp. MED121 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 6.988749595 6.881128519 118719690 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 7.593171169 7.911496325 7.590310949 7.620899514 8.217658223 8.13065255 7.87270161 7.733596377 8.177680782 28853967 AceB Carbon cycling Carbon degradation others Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 7.827732783 7.649994682 7.256219049 7.896316123 7.446608114 7.241923558 7.895170773 7.539764181 254488813 hly virulence hemolysin Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.790596337 7.791783137 7.734840381 6.766173819 7.438692302 7.663928638 7.384214136 7.36354146 7.606791208 2385386 mdlB Organic Remediation Aromatics Aromatic carboxylic acid Rhodotorula graminis superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;order:Sporidiobolales;genus:Rhodotorula; 7.408716564 6.889073721 6.772866361 7.334693227 7.129056544 6.885891632 7.223041377 167651807 sigma_70 Stress Sigma factors Anaerostipes caccae DSM 14662 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Anaerostipes;species:Anaerostipes caccae; 7.371222136 7.475228376 7.294494361 7.089967088 7.397175831 7.329308802 6.917414321 7.511304521 145563868 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Shewanella putrefaciens CN-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella putrefaciens; 7.548245369 7.146127824 7.339113808 6.828088098 7.76216308 113908310 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Shewanella baltica OS195 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 7.251765445 7.379610477 7.456775136 7.365972008 27549566 mdlB Organic Remediation Aromatics Aromatic carboxylic acid Zantedeschia aethiopica superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Streptophyta;class:Liliopsida;order:Alismatales;family:Araceae;genus:Zantedeschia; 7.397168342 7.362368914 7.016327537 7.103816582 7.691050691 7.133410959 7.023001788 156708224 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 7.379780203 7.482269392 7.626751178 8.293268863 7.704028189 8.10473193 7.927295579 7.741162367 115260130 ara Carbon cycling Carbon degradation Hemicellulose Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.114401217 8.083195182 7.465140332 7.716145415 8.066216212 7.774513762 7.714090198 7.930641227 163859225 dehH Organic Remediation Chlorinated solvents Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 7.287766344 7.52044283 7.374995202 6.87383132 6.952082395 7.220800159 7.352448474 7.176804293 7.359867127 187477402 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 8.05275215 7.876366372 7.507757911 7.740500569 7.627169038 7.886610568 7.25883532 7.251576477 7.510804934 35214744 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 8.690409949 8.649592196 8.07955322 8.410636888 8.266085805 8.238445084 8.595175352 227342923 AceB Carbon cycling Carbon degradation others Rhizobium sp. NGR234 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 7.379889146 8.108998088 8.216095539 8.417049133 8.37224736 8.597671526 8.337411617 8.618670128 26106105 carA Organic Remediation Aromatics Heterocyclic aromatics Pseudomonas resinovorans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.210028378 7.447854355 7.581913773 7.900930062 7.441194238 7.752550671 7.927235368 7.508759819 121531160 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 7.324983219 7.36548818 7.361338802 7.136936059 7.252638376 7.688462496 7.154138558 7.625096506 87120195 Catechol Organic Remediation Aromatics Other aromatics Marinomonas sp. MED121 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 7.36291474 7.082286483 6.954955155 70905571 SMR_antibiotics Antibiotic resistance transporter Achromobacter denitrificans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter; 7.251519022 7.555828641 7.935831811 7.018795462 8.10099714 7.921728 7.569446589 7.789078562 149360225 pheA Organic Remediation Aromatics Other aromatics Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 7.995527171 7.460952374 7.44107233 6.971429396 7.173701281 145591137 narI Stress Oxygen limitation Pyrobaculum arsenaticum DSM 13514 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum arsenaticum; 7.849405088 7.459091789 7.177356204 7.378019001 7.404660509 7.150793429 7.23255769 153874159 AprA Sulphur adenylylsulfate reductase Beggiatoa sp. PS 7.011447389 7.145997558 70671639 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7.673286361 7.507292257 7.130226199 6.977051317 7.243435574 7.795556885 7.256770065 6.909304199 148501125 fnr Stress Oxygen stress Sphingomonas wittichii RW1 7.589051302 7.568153349 7.884538026 7.562217848 7.33898381 7.869786406 7.644092329 7.699381944 7.465286959 17981816 integrase_tyrosine Bacteria phage REPLICATION Haemophilus phage HP2 order:Caudovirales;family:Myoviridae;genus:P2-like viruses; 7.825555453 7.422259899 7.371914314 7.256148941 7.269468429 7.530489682 7.333069113 7.589397156 7.542076318 73541640 dehH109 Organic Remediation Chlorinated solvents Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.240562961 7.440524662 7.443716033 6.86808803 7.314725893 7.550836741 7.748179754 7.702924873 7.732438509 187940063 TerC Metal Resistance Tellurium Pseudomonas aeruginosa superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.387359878 7.573816684 7.515395196 7.560947832 7.603780837 7.288912944 7.526599288 145596737 mer Metal Resistance Mercury Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 8.412223163 8.283765065 8.450598209 8.141851199 8.782640913 8.401921768 8.647046785 8.451667216 8.437660476 229855055 ahpC Stress Oxygen stress Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 7.609385673 7.560246066 7.230672784 6.974680811 7.509891744 7.676795285 7.512060298 7.250645105 7.376941917 227528367 apu Carbon cycling Carbon degradation Starch Lactobacillus ruminis ATCC 25644 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus ruminis; 6.757265693 6.562950633 7.16096718 149277354 catB Organic Remediation Aromatics BTEX and related aromatics Pedobacter sp. BAL39 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter; 7.204756213 7.136832908 229493094 grpE Stress Heat shock Rhodococcus erythropolis SK121 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 8.376027187 7.427031292 7.759301524 7.827252651 7.720974911 8.159349858 7.771007221 7.453852969 19568104 exoglucanase Carbon cycling Carbon degradation Cellulose Talaromyces emersonii superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces; 7.903911275 7.768624434 7.660304424 7.769600438 8.250362519 8.041812346 8.01886221 7.810883828 8.026739106 25169084 thmAB Organic Remediation Others Arthrobacter nicotinovorans superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.015005076 7.228024353 7.495745854 6.855442215 7.431836713 7.262468616 7.199466462 7.574459552 29338397 ZntA Metal Resistance Zinc Bacteroides thetaiotaomicron VPI-5482 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides thetaiotaomicron; 7.393172881 6.891264633 7.192576079 6.905822053 7.010700995 150836371 pcpE Organic Remediation Herbicides related compound Marinomonas sp. MWYL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 7.469602458 7.905108915 7.835097767 7.949246311 99083297 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.15474549 7.035983764 6.804314402 6.655414432 7.377850692 6.799372122 7.017819125 111075042 pstA Stress Phosphate limitation Heliobacillus mobilis 7.269221653 7.063543535 7.284279783 7.144447928 7.563805451 7.170213833 7.018141806 88866370 dsrB Sulphur sulfite reductase bacterium AR1201 superkingdom:Bacteria; 7.451864738 7.471750256 7.22126026 6.961032053 6.88796929 7.597306471 254820751 SMR_antibiotics Antibiotic resistance transporter Mycobacterium intracellulare ATCC 13950 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 7.468616426 7.304941684 7.662534658 6.961785249 7.490399003 7.706330072 7.668641181 7.44798739 7.342490777 38199371 narG Nitrogen Denitrification Corynebacterium diphtheriae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium; 7.251203237 7.312909417 7.366475805 6.780019187 7.201612427 7.434579053 7.306029137 7.256534428 254507421 pilin virulence pilin Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.273791964 7.032462341 7.154960803 7.099200099 7.344811348 7.14230212 7.487999267 83310206 pstB Stress Phosphate limitation Magnetospirillum magneticum AMB-1 7.152583312 7.337116884 7.459843694 7.224450772 8.003238944 7.197450816 7.069412497 7.659318286 194335878 SMR_antibiotics Antibiotic resistance transporter Pelodictyon phaeoclathratiforme BU-1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 7.32701069 7.185291893 7.387293847 7.1307123 7.234205503 7.654804915 7.073776105 7.35211582 216852 nhh Organic Remediation Aromatics Nitoaromatics Pseudomonas chlororaphis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas chlororaphis; 7.955893748 7.626527727 7.859218833 7.790844504 7.496897096 8.271094082 7.362017969 7.451281521 7.492712159 83943376 AmiE Organic Remediation Aromatics Other aromatics Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 7.342596883 7.262662392 7.13472943 6.636266496 7.466704654 212544482 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.737167625 7.544844524 7.41577801 7.791761192 8.022395793 7.620778618 7.440596088 7.622234553 109701902 pstA Stress Phosphate limitation Pseudoalteromonas atlantica T6c 7.293332196 7.083126884 7.298017333 7.163139024 7.074209692 6.928754998 7.274200412 83590020 pstB Stress Phosphate limitation Moorella thermoacetica ATCC 39073 7.197375316 7.481564133 7.53587491 7.913342815 7.799823227 7.681941072 7.403231164 7.23757642 163743765 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 7.256781169 7.100394097 7.125405616 6.976315002 7.468065755 1653921 TehB Metal Resistance Tellurium Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 7.302462602 7.155526716 6.998929517 7.017466533 7.259669633 54018030 narG Nitrogen Denitrification Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 7.869989847 7.729115366 7.62007669 7.751785794 7.509613365 8.18570096 7.489282398 7.310587653 7.545310208 197721174 amyA Carbon cycling Carbon degradation Starch Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 7.554925076 8.073611496 8.169130529 7.494276347 8.212808876 7.608198806 8.009729074 7.971313408 8.39774981 150398267 Arylest Organic Remediation Aromatics Other aromatics Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 8.045737666 7.86686468 7.89990264 7.698511081 7.389718278 7.723007419 7.556035642 262275683 iuc virulence aerobactin Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;species:Grimontia hollisae; 6.945425977 7.17268013 71002798 nbaC Organic Remediation Aromatics Nitoaromatics Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 6.957579266 7.245431562 7.490079403 6.869890455 7.492411926 7.59745247 6.911734175 7.02604116 118002071 CopA Metal Resistance Copper Comamonas testosteroni KF-1 6.901233814 6.962539072 270342718 obgE Stress Radiation stress Dickeya dadantii Ech586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 7.475386915 7.896684983 7.911898442 7.138105925 7.599927756 7.893953147 7.511233109 7.742902158 7.825171467 221725850 fnr Stress Oxygen stress Agrobacterium radiobacter K84 7.48624207 7.150787789 7.31632791 6.94050475 7.122345167 7.675878992 7.28267788 7.191849292 7.224738431 139002613 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.712129625 7.552796288 7.645351386 7.954532275 7.169033862 7.635025098 7.252466233 7.58722817 7.606376604 24984054 nitro Organic Remediation Others Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.569901104 7.478182928 7.414305572 7.366387076 156062742 nitA Organic Remediation Aromatics Other aromatics Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 7.33907834 7.214052441 7.18502876 6.84809177 7.288124392 7.311828485 7.138503541 212686178 CadA Metal Resistance Cadmium Providencia alcalifaciens DSM 30120 7.060922631 7.075491192 7.233512988 7.23623497 7.589072923 7.159721137 7.486506538 7.401679497 254513280 proV Stress Osmotic stress Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 7.785871331 7.451608484 7.473726665 7.450302992 7.396549262 7.629364736 7.402054764 7.366527738 217967697 sigma_70 Stress Sigma factors Dictyoglomus turgidum DSM 6724 superkingdom:Bacteria;phylum:Dictyoglomi;class:Dictyoglomia;order:Dictyoglomales;family:Dictyoglomaceae;genus:Dictyoglomus;species:Dictyoglomus turgidum; 7.090409334 7.046367898 6.935431334 109643261 Ni_Fe_hydrogenase Energy process Energy process Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 7.36802634 7.281593849 7.293310662 127513772 dnaK Stress Heat shock Shewanella loihica PV-4 7.268896166 7.160905224 68057335 ureC Nitrogen Ammonification Haemophilus influenzae 86-028NP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus influenzae; 7.838729361 7.413881548 7.574127659 7.625447868 8.173223193 7.926730659 8.04721371 7.655383785 7.929297898 163760013 glnA Stress Nitrogen limitation Hoeflea phototrophica DFL-43 7.594757739 7.361825109 7.16221348 217076847 obgE Stress Radiation stress Thermosipho africanus TCF52B superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermosipho;species:Thermosipho africanus; 7.011161594 6.943215633 256830446 pstA Stress Phosphate limitation Desulfomicrobium baculatum DSM 4028 7.239299422 7.40099965 7.724164369 8.004297426 7.360140184 7.91838458 7.565684799 7.759195985 260608712 obgE Stress Radiation stress Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 7.31272579 7.448375597 7.027296753 6.737894381 7.484861615 7.123531429 6.762967678 220928195 CopA Metal Resistance Copper Clostridium cellulolyticum H10 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium cellulolyticum; 7.433417664 7.56971964 7.037014176 7.400244062 7.430893553 7.463044477 7.403407407 7.436360574 169826856 katE Stress Oxygen stress Lysinibacillus sphaericus C3-41 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Lysinibacillus;species:Lysinibacillus sphaericus; 7.453168248 7.054458555 6.928874839 7.178865805 82719883 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Shewanella sp. W3-18-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 7.506132887 7.866513986 7.994791559 8.00743266 8.150625651 8.502845362 8.379881345 81251122 ureC Nitrogen Ammonification Nitrosospira sp. NRS527 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira; 7.443596962 7.476688696 7.38105731 7.214594411 7.394969531 237747496 ahpF Stress Oxygen stress Oxalobacter formigenes HOxBLS superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Oxalobacter;species:Oxalobacter formigenes; 7.271622106 7.013559548 7.306601169 6.834055196 7.773118098 7.25212859 7.120541608 7.169196393 13249537 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.813006177 7.562899432 7.417851763 7.30016667 7.549541333 7.738863089 7.366184979 7.37899585 7.174678698 169793422 narG Nitrogen Denitrification uncultured bacterium 8.316780801 7.808622312 8.065231812 7.861585285 8.133138739 7.815814436 8.008072927 7.362392005 239631415 sigma_70 Stress Sigma factors Lactobacillus paracasei subsp. paracasei 8700:2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus paracasei; 7.716613738 8.051123899 7.577780001 7.465059444 7.975104961 7.886695218 7.856589148 7.621575945 7.673887339 156742668 carA Organic Remediation Aromatics Heterocyclic aromatics Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 8.130872 8.079103169 8.025846828 7.525555115 7.871722122 7.92323543 7.801722987 7.757973111 7.267344765 169630482 nmoA Organic Remediation Aromatics Nitoaromatics Mycobacterium abscessus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.99405518 7.905680078 7.718325929 8.038080953 8.099604092 8.136313145 7.93638997 7.852566836 157917738 TerC Metal Resistance Tellurium Salinispora arenicola CNS-205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 7.720727704 7.600596631 7.500539631 7.057483661 7.657080128 7.781719538 7.433285771 7.676475182 7.311619494 213861409 dmsA Organic Remediation Others Salmonella enterica subsp. enterica serovar Typhi str. M223 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 7.193723197 7.280946822 7.50079176 219860902 nmoA Organic Remediation Aromatics Nitoaromatics Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 7.613720684 7.653015319 7.598000519 7.598389906 7.370596057 7.73893696 7.249651628 7.42300576 157285610 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.526460524 7.573429352 7.311779343 7.250203427 7.735959609 7.614847742 7.45881665 7.368831775 7.707599428 210049985 dxnA Organic Remediation Aromatics Heterocyclic aromatics Terrabacter sp. YK1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Terrabacter; 7.81371826 7.336887142 7.20452022 7.34437291 7.244162013 7.146166762 7.318489734 56692284 nifH Nitrogen Nitrogen fixation Heliorestis daurensis superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Heliobacteriaceae;genus:Heliorestis; 7.328917111 7.193410199 7.226082631 6.800052238 7.019698444 7.403754499 7.16686642 7.151315597 7.341956128 118594216 gyrB other category gyrB Methylophilales bacterium HTCC2181 7.560915167 7.097018696 7.339142922 7.585313108 7.095519223 7.651202165 7.354302642 7.165595826 7.502890418 118504470 bclA Organic Remediation Aromatics Aromatic carboxylic acid Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 7.907404278 7.580036483 7.346302971 7.824741605 7.436421878 8.055939008 7.800547823 8.043468205 7.449427406 124488299 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.332283805 7.078954486 194464404 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.474331719 7.219416237 7.533993352 7.440798514 239826129 SMR_antibiotics Antibiotic resistance transporter Geobacillus sp. WCH70 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.05385272 6.914245866 117996161 CopA Metal Resistance Copper Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 8.081669534 7.682348619 7.688951162 7.207785336 7.723615284 7.652966038 7.555493042 7.523001624 8.029023601 148244267 ahpC Stress Oxygen stress Candidatus Vesicomyosocius okutanii HA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:Calyptogena okutanii thioautotrophic gill symbiont; 7.013097523 7.01236695 7.080138993 159897546 AceA Carbon cycling Carbon degradation others Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 7.473273405 7.324208875 7.316494231 7.395096536 7.362528946 8.001313362 7.381183544 7.216058727 163735959 sox Sulphur Sulphur oxidation Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 7.681606335 7.612624027 7.515856195 7.468013633 7.278697534 7.738832058 7.606586516 7.30874897 7.301666423 89512902 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.210393591 6.918651776 7.070411672 6.70975549 7.426909035 6.93814203 7.225869094 25990810 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.879906629 7.639437781 7.404385066 7.379780571 7.660764963 7.717262195 7.529838232 7.675406841 7.613615586 257147830 pstA Stress Phosphate limitation Lactobacillus rhamnosus GG 7.29014079 7.275020993 7.336202282 6.857233149 6.614171842 7.642702477 6.956389993 7.164064273 7.24769064 107856915 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 8.02615959 7.826781343 7.705554191 7.758835667 7.609740212 7.919019523 7.816256399 7.675226091 7.402070259 46124359 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 8.556205551 8.827438021 8.645296743 7.943072487 8.873579987 8.025606197 8.606150758 8.555210612 8.876386483 91697353 phoB Stress Phosphate limitation Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 7.577337013 6.907878883 7.608829829 7.699542725 7.379922777 7.42027524 7.424845127 119177237 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Coccidioides immitis RS superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides immitis; 7.456015849 7.888031908 7.675290378 7.375801532 7.868905789 7.729240628 7.592010583 7.847883379 84393179 atzA Organic Remediation Herbicides related compound Vibrio splendidus 12B01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 6.872438365 6.66759299 7.449158023 251795094 phoA Stress Phosphate limitation Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.673144243 7.712420713 7.093006368 7.627271205 7.771273774 7.455253321 7.262935433 7.310228417 239806527 amyA Carbon cycling Carbon degradation Starch Geobacillus sp. WCH70 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.871629646 7.986349144 7.719701585 7.677925929 7.638119215 7.862763631 7.916591912 7.596032572 8.003062366 238707832 ppx Phosphorus Phosphorus utilization Yersinia ruckeri ATCC 29473 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia ruckeri; 7.478969872 7.675067999 7.46031921 7.470146408 7.256778632 8.170818737 7.360806934 7.595456594 6.985274235 161729071 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 7.110167235 7.07709361 90297413 pap virulence adhesin Escherichia coli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 7.284231976 7.101495277 7.252029499 6.800293556 7.024753239 7.54595098 4126638 integrase_serine Bacteria phage REPLICATION Bacteriophage phi-105 order:Caudovirales;family:Siphoviridae;genus:Lambda-like viruses; 7.036309515 7.187045052 6.956819186 7.6084347 7.205135151 7.066919921 7.466024715 2983828 pilin virulence pilin Aquifex aeolicus VF5 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Aquifex;species:Aquifex aeolicus; 7.418503732 7.390110373 7.630611067 7.192394412 7.658486389 7.732721675 7.826244673 7.692339443 7.547864807 118682613 nahF Organic Remediation Aromatics Polycyclic aromatics Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 7.341806822 7.226535324 7.340648052 6.941454183 7.681579311 198274368 sigma_24 Stress Sigma factors Bacteroides plebeius DSM 17135 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides plebeius; 7.795444108 7.682185369 7.784708936 6.907299078 7.883982265 7.514786599 7.667025426 7.318661539 7.646113341 152978649 bglP Stress Glucose limitation Actinobacillus succinogenes 130Z superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus succinogenes; 7.167148832 7.205921052 7.012431487 7.335286237 6.836510093 7.61665064 7.187016215 6.950140913 124516203 ABC_transporter_II Bioleaching other category Leptospirillum sp. Group II UBA 7.809869274 7.773749652 7.551042239 7.636424146 7.80672439 8.159382954 8.400743438 8.376482864 7.948066633 115526878 pstC Stress Phosphate limitation Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.595123758 7.519973231 7.188378107 7.558663833 7.592387481 7.341737162 7.456269966 7.643682872 148263215 TerC Metal Resistance Tellurium Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 7.34497055 7.194126148 7.500149019 119375179 pimF Organic Remediation Aromatics Aromatic carboxylic acid Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 7.19259617 7.133617561 151575648 cbdA Organic Remediation Aromatics Chlorinated aromatics Ralstonia pickettii 12D 7.584542764 7.578427264 7.51661924 7.281617667 7.58800553 7.727661911 7.452665806 7.300586813 7.36533667 152980122 alkK Organic Remediation Others Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 7.164189761 6.839725959 6.892399745 167780518 CopA Metal Resistance Copper Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira biflexa; 7.374618977 6.689121308 6.992332821 213029583 dmsA Organic Remediation Others Salmonella enterica subsp. enterica serovar Typhi str. 404ty superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 7.276687672 7.066846535 99037376 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.955369113 8.224156852 8.05861249 8.110898529 8.365083252 8.483014145 8.219754054 8.177188908 257475878 clpC Stress Protein stress Eggerthella lenta DSM 2243 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Eggerthella;species:Eggerthella lenta; 7.54873327 7.563126625 7.869564152 7.242078457 7.843432895 8.094725833 7.845129208 7.91252386 7.30554635 557074 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas sp. superkingdom:Bacteria;phylum:Proteobacteria; 6.858187443 7.0263784 6.983522472 6.628237287 6.793048231 7.040510807 7.039805289 7.134455698 124110859 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 6.846853096 6.910324391 189427212 lysin Bacteria phage LYSIS Salmonella phage phiSG-JL2 order:Caudovirales;family:Podoviridae;genus:T7-like viruses; 7.197663275 7.122512949 7.435652386 7.181279594 7.412567816 7.824720459 7.753205693 7.614170079 7.451238909 49473832 cap virulence capsule Bartonella quintana str. Toulouse superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella quintana; 7.640668311 7.453128684 7.183746261 7.243734542 7.224483796 19073003 endochitinase Carbon cycling Carbon degradation Chitin Hypocrea virens superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 7.840768332 7.71190729 7.50839272 7.232497712 7.653775865 7.829624711 7.200587861 7.930112296 91204153 hao Nitrogen Nitrification Candidatus Kuenenia stuttgartiensis 7.318348222 7.205233148 7.319823428 6.948963891 6.935125217 7.750446316 7.162005898 7.125511838 7.314422881 261857058 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.326638283 7.229418605 7.369525175 7.432812682 7.062135412 7.620838332 7.097254247 7.506734584 7.398712776 269102828 endochitinase Carbon cycling Carbon degradation Chitin Photobacterium damselae subsp. damselae CIP 102761 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium damselae; 7.021277505 7.006571535 6.9497627 121996850 sigma_24 Stress Sigma factors Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 7.53000263 7.463548737 7.083030822 7.154614752 6.966431213 149792793 obgE Stress Radiation stress Thermosipho melanesiensis BI429 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermosipho;species:Thermosipho melanesiensis; 6.927194615 7.171424657 7.101076998 110678825 sox Sulphur Sulphur oxidation Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 7.207673445 7.3998157 7.621305406 7.454263577 7.24761978 7.700002401 7.377950146 7.090829505 157917577 linB Organic Remediation Pesticides related compound Salinispora arenicola CNS-205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 8.208657421 8.254973513 7.791408224 8.177241449 7.985065047 7.591701824 8.00837012 209959794 gyrB other category gyrB Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 8.123899546 8.069085456 7.69965761 7.738503651 7.952506362 8.296183078 7.650116181 7.88824952 7.785327196 157374541 cytochrome Energy process Energy process Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 6.842369911 7.207360495 149180593 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Bacillus sp. SG-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.38478853 7.434623515 7.65663903 7.249266797 7.623097693 7.807637019 7.436829829 7.140937147 7.587264573 209502132 MFS_antibiotic Antibiotic resistance transporter Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.575721022 7.33034933 7.394785854 7.232766689 7.064661813 7.06765033 7.120037816 6939900 gyrB other category gyrB Porphyromonas asaccharolytica superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas; 7.108184852 6.903505702 7.153717464 6.609661596 7.217215276 7.018421517 6.809022362 157804834 APS_AprA Sulphur adenylylsulfate reductase Thiococcus pfennigii 7.70017622 7.636649602 7.845875659 7.200453127 6.907067026 7.473296208 7.644258778 7.375237293 15890442 HBH Organic Remediation Aromatics BTEX and related aromatics Agrobacterium tumefaciens str. C58 7.540277666 7.554958244 7.55410334 7.133566066 7.096688762 7.463253988 7.291759367 7.446222609 7.359368923 46916735 Mex Antibiotic resistance transporter Photobacterium profundum SS9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 7.454817712 7.691909169 7.479891878 7.25044703 7.886201667 7.661416596 7.882184744 7.650721055 7.462230685 158424812 pimF Organic Remediation Aromatics Aromatic carboxylic acid Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 7.805993074 7.840485597 7.81386185 7.378664654 7.990704483 7.715930345 7.665529941 7.637110826 7.717861572 256362559 SMR_antibiotics Antibiotic resistance transporter Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 7.973048161 7.524275085 7.409571892 7.59684963 7.477169693 239625965 ara Carbon cycling Carbon degradation Hemicellulose Clostridiales bacterium 1_7_47_FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales; 7.667733951 7.368715262 7.419952362 7.210577809 7.833044519 8.078104439 7.693574283 7.562013012 7.944683301 188533197 ppk Phosphorus Phosphorus utilization Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 7.14983976 7.178537817 7.420828832 7.12935771 49610328 bglP Stress Glucose limitation Pectobacterium atrosepticum SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 7.695799538 7.947810721 8.494728096 8.58590441 7.835545686 8.731359535 7.795848004 7.919057115 8.209045234 92113227 katE Stress Oxygen stress Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 7.185951857 7.458593183 7.583659521 7.149133853 7.282798018 7.44421492 7.532720905 7.903674331 117562292 oxyR Stress Oxygen stress Aeromonas hydrophila subsp. hydrophila ATCC 7966 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas hydrophila; 7.657741888 7.510125345 7.357953604 7.199131624 91795036 ZntA Metal Resistance Zinc Shewanella denitrificans OS217 7.624787507 7.440972227 7.728289376 8.025715651 7.939497018 7.847873911 7.963868508 7.637254259 94449466 mcrA Carbon cycling Methane Methane production uncultured archaeon superkingdom:Archaea; 7.548236424 7.154792198 83404794 nirS Nitrogen Denitrification uncultured organism 7.218810015 7.193669747 7.487057483 7.157863851 7.553034082 7.349595642 7.478100594 7.570817507 116633896 narG Nitrogen Denitrification uncultured bacterium 7.047847153 6.660219157 7.342231573 6.720904669 7.529771553 6.860223699 6.938065121 208936519 dsrA Sulphur sulfite reductase uncultured prokaryote 8.112351011 7.976481414 8.031722504 8.417685774 7.909477954 7.781977472 7.885474247 7.834729257 56475436 pilin virulence pilin Aromatoleum aromaticum EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 7.92643567 7.727553285 7.565149651 7.079734886 7.303964553 7.649756399 7.305853164 7.50773044 7.248043099 119898714 nagL Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. BH72 8.137852685 8.091160216 8.040689418 8.076518584 8.564249178 8.208067939 8.189528158 8.139353959 8.564219265 259021598 hrcA Stress Heat shock Rhodobacter sp. SW2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 8.070999462 8.213077951 7.69855386 8.198934157 7.932751754 7.960596654 7.773738044 8.054437779 134094338 pstS Stress Phosphate limitation Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 7.48726539 7.396130706 7.782127782 7.470285326 7.100901088 7.465959941 7.388390466 7.170601722 117924029 gyrB other category gyrB Magnetococcus sp. MC-1 superkingdom:Bacteria;phylum:Proteobacteria;genus:Magnetococcus; 7.682877678 7.550867058 7.155263744 7.161318722 7.563191241 7.585358302 7.32524262 39935327 arsB Metal Resistance Arsenic Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.443056593 7.327663999 7.036013746 7.565089926 7.775834613 7.318956592 7.288131702 270265046 obgE Stress Radiation stress Serratia odorifera 4Rx13 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia odorifera; 7.313070111 7.212497163 7.423967132 7.312418586 6.98848759 7.243342769 7.260905322 209533764 sigma_24 Stress Sigma factors Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.55113981 7.988846019 7.654335486 7.601436278 8.026582921 8.214235611 8.038790808 7.76935713 8.071610703 92115076 ahpC Stress Oxygen stress Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 7.484024062 7.641002524 7.362220238 7.007202437 7.642866562 7.224408454 7.209003785 7.082020817 241190896 ahpF Stress Oxygen stress Bifidobacterium animalis subsp. lactis Bl-04 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 7.03463669 7.169315502 7.324299133 116634809 narG Nitrogen Denitrification uncultured bacterium 7.158894197 7.23726482 7.129731273 6.796606595 7.194745142 7.436841472 7.174821405 7.553156395 189419345 gyrB other category gyrB Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 7.118997308 7.456777679 7.627918851 7.715175189 7.410793578 7.498729084 7.449574328 7.945004564 86136073 CopA Metal Resistance Copper Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.553483743 7.68075835 7.367350942 7.341977679 7.415815126 7.169050226 26985954 sox Sulphur Sulphur oxidation bacterium HY-90 superkingdom:Bacteria; 8.122924088 8.127713245 8.1985116 7.839450996 8.125645528 8.048185353 8.100377991 8.285559357 8.141236171 3318593 nplT Carbon cycling Carbon degradation Starch Bacillus sp. 7.384508429 7.446516977 7.525094098 7.062532377 7.050172247 45543 rubisco Carbon cycling Carbon fixation Prochlorothrix hollandica superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorotrichaceae;genus:Prochlorothrix; 8.104122735 8.345555919 8.163886369 7.794192221 8.303714838 7.954499439 8.316798033 8.003623732 8.136523473 84503212 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 7.42768772 7.311996113 7.068290567 7.628321969 7.42794602 7.371256514 268626279 pap virulence adhesin Neisseria gonorrhoeae SK-93-1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria gonorrhoeae; 7.783437817 7.508183091 7.224837281 7.013950975 7.313272424 6.927239406 7.106712425 116749156 katE Stress Oxygen stress Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 8.120969133 8.041138515 7.91201732 8.474305499 8.33870119 8.175390886 8.587607083 8.189072957 118036581 CopA Metal Resistance Copper Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.749944501 7.80602287 7.81807632 8.017375437 7.99999038 8.235314474 7.963133664 7.988496192 7.938582629 87119164 aclB Carbon cycling Carbon fixation Marinomonas sp. MED121 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 8.166951067 7.601025822 7.720832365 7.996636481 7.846208154 7.741080082 7.796650029 20807398 obgE Stress Radiation stress Thermoanaerobacter tengcongensis MB4 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Thermoanaerobacter;species:Thermoanaerobacter tengcongensis; 7.472420245 7.26842856 6.98039143 150257943 tutFDG Organic Remediation Aromatics BTEX and related aromatics Victivallis vadensis ATCC BAA-548 superkingdom:Bacteria;phylum:Lentisphaerae;family:Victivallaceae;genus:Victivallis;species:Victivallis vadensis; 7.624621395 7.525620563 7.521352026 7.435900836 7.797196039 7.876307146 7.836487279 7.869637386 7.779174474 90335039 AceB Carbon cycling Carbon degradation others Aurantimonas manganoxydans SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 7.661323414 7.63923611 7.669237826 7.513885134 7.920835474 7.886867199 7.892340257 8.04376121 7.862448063 117613714 AceA Carbon cycling Carbon degradation others Shewanella sp. ANA-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 7.583811207 7.395145304 7.739637303 7.652813791 7.276685606 7.443462098 7.799819505 7.683223478 145557107 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 7.746694525 7.593381655 7.629703739 7.189284892 7.535721094 7.656871954 7.275898759 7.41256332 78610136 sigma_70 Stress Sigma factors Lactobacillus sakei subsp. sakei 23K superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus sakei; 7.474313662 7.313010867 226093413 SMR_antibiotics Antibiotic resistance transporter Brevibacillus brevis NBRC 100599 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus brevis; 7.785333988 7.308764556 7.155293736 7.041669678 7.33376307 7.541945435 7.610346897 119173175 AceB Carbon cycling Carbon degradation others Coccidioides immitis RS superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides immitis; 7.434651628 7.349821609 7.354821126 7.438174996 7.422975954 7.512255581 7.399533081 7.267510329 74419577 pstB Stress Phosphate limitation Nitrobacter winogradskyi Nb-255 7.86959895 7.399051155 7.727395563 8.07318477 7.9386887 8.224505874 7.908924941 7.826441928 7.697796852 219996013 atzA Organic Remediation Herbicides related compound Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 7.758025608 7.673053162 7.599829459 7.604844007 7.650144462 7.718764169 7.223697208 7.489950934 14022858 phn Organic Remediation Herbicides related compound Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 7.54101443 7.8086672 7.316411397 7.150238045 7.845900817 7.025489525 7.28168684 213580908 dmsA Organic Remediation Others Salmonella enterica subsp. enterica serovar Typhi str. E98-0664 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 7.959136132 7.860738737 7.848469786 7.607635837 7.903456879 8.176461918 7.995818853 7.503557109 7.900096449 254430144 sigma_70 Stress Sigma factors Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 7.443666887 7.574721778 8.005965488 8.085074789 7.607758963 7.986483078 7.235715862 7.731533428 7.560111463 261282855 Tet Antibiotic resistance other Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.471425599 7.494283193 7.860514784 7.446094761 7.354865794 7.465973548 7.756778995 7.461844025 166862208 grpE Stress Heat shock Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.637960731 7.335996295 6.78690122 7.217192444 7.490075069 7.332897835 7.20300083 7.139115137 33571972 fnr Stress Oxygen stress Bordetella pertussis Tohama I 7.519067719 7.233065192 7.025159659 7.39317351 7.34824711 7.312575904 7.076176459 7.213433554 116646289 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia cenocepacia HI2424 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 7.737783476 7.495507876 7.323487388 7.283231964 7.111223197 7.596742199 7.244755745 7.553188505 7.258953431 114740151 mer Metal Resistance Mercury Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 7.615158865 7.588507759 7.41354637 7.372323199 7.001305104 7.542157367 7.5377252 7.449393091 7.561180714 154155795 Arylest Organic Remediation Aromatics Other aromatics Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 7.180412587 7.488101324 7.223725885 6.829417643 7.515100733 7.597053224 7.400323531 7.426071703 7.626844935 149921691 sigma_70 Stress Sigma factors Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 7.744274222 7.483197552 7.491108817 7.401042052 7.160053179 7.779865407 7.229948671 7.29858663 71145139 glnA Stress Nitrogen limitation Colwellia psychrerythraea 34H 6.705511899 6.900788268 7.437910088 6.958266343 7.273478295 168991573 catB Organic Remediation Aromatics BTEX and related aromatics Lysinibacillus sphaericus C3-41 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Lysinibacillus;species:Lysinibacillus sphaericus; 7.194641492 7.152065231 7.249047864 6.817648289 6.697326178 7.595812451 7.071077677 7.031483157 7.193011264 119391465 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.098626047 7.802182485 8.234421239 7.681427326 8.385685711 8.156658706 8.078969456 8.581707863 8.141802112 84778361 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.123664851 6.995394075 22777628 sigma_70 Stress Sigma factors Oceanobacillus iheyensis HTE831 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Oceanobacillus;species:Oceanobacillus iheyensis; 7.146864476 7.514187114 7.195307362 6.922879581 7.765822636 7.679734335 7.7084283 7.166755836 7.710561621 73762902 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.292257529 7.448637129 7.576328817 7.209095715 7.205885084 7.192695289 7.504390719 7.282796526 157679437 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.278226404 7.432339214 7.564300252 7.586330732 7.241091251 7.743838354 7.48542511 7.427118075 7.34100603 229589758 pectinase Carbon cycling Carbon degradation Pectin Pseudomonas fluorescens SBW25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.378330275 7.42478776 7.154276021 7.397275748 7.267785202 14022958 ahpC Stress Oxygen stress Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 8.138901713 7.966671501 7.367520854 7.597388996 7.722147669 7.555954278 7.773340145 7.37251209 260101985 nplT Carbon cycling Carbon degradation Starch Lactobacillus helveticus DSM 20075 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus helveticus; 7.036118495 7.105452442 6.767047276 255293519 cydA Stress Oxygen limitation Propionibacterium sp. oral taxon 191 str. F0233 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acidifaciens; 7.504795727 7.145655289 146451637 pheA Organic Remediation Aromatics Other aromatics Lodderomyces elongisporus NRRL YB-4239 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Lodderomyces;species:Lodderomyces elongisporus; 6.994118078 7.076999151 84711652 phdG Organic Remediation Aromatics Polycyclic aromatics Polaromonas naphthalenivorans CJ2 7.175037671 7.594278984 7.837261471 7.642891902 7.12311301 7.991350414 7.828125998 7.514552505 7.746241541 62944558 gyrB other category gyrB Zymomonas mobilis subsp. francensis superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Zymomonas;species:Zymomonas mobilis; 6.990561013 6.963606309 6.677880172 7.559791188 83317108 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.259152943 7.503377868 7.344589866 6.785851059 7.421086958 7.209074331 7.281972755 91787245 ureC Nitrogen Ammonification Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 7.191685937 7.374736393 7.68191331 7.577444234 6.874631588 8.108222107 7.264609793 7.195414809 7.55677457 98976939 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Sphingopyxis alaskensis RB2256 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 7.369400952 7.429100819 7.119323791 7.149275727 7.783215326 7.935473696 7.739183114 7.749972491 7.688265875 81168585 mer Metal Resistance Mercury Synechococcus elongatus PCC 7942 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus;species:Synechococcus elongatus; 7.324916065 7.874104639 7.769599441 7.556111848 7.590429909 7.816918728 7.85615082 7.853472214 8.176189594 2104720 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 7.66519514 7.488696599 177843079 sigma_24 Stress Sigma factors Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 8.111774475 8.096365047 7.918488092 7.841014889 7.535741832 7.434313736 7.366267498 7.968414505 49475731 ppx Phosphorus Phosphorus utilization Bartonella henselae str. Houston-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella henselae; 7.122030582 6.893717775 6.514977537 6.784852798 7.514215457 229490873 oxyR Stress Oxygen stress Rhodococcus erythropolis SK121 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 7.191767721 7.130381504 6.880154731 6.950877624 7.080664906 7.260569175 7.451394951 262184119 katE Stress Oxygen stress Corynebacterium aurimucosum ATCC 700975 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium aurimucosum; 7.550441765 7.853977768 7.909651759 8.183061899 7.966552739 8.129168604 8.125502903 8.234101106 7.783853756 78219835 phoB Stress Phosphate limitation Desulfovibrio desulfuricans subsp. desulfuricans str. G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 8.288177038 7.985903996 7.749554482 8.442739323 8.085202813 8.028195888 8.256914576 62131458 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 7.255722967 7.240388914 7.385153631 7.365844136 7.314983673 7.02987525 7.476118475 17385476 narG Nitrogen Denitrification Paenibacillus sp. Lgg15.12 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.372819495 7.258355036 6.967788829 145205128 sox Sulphur Sulphur oxidation Prosthecochloris vibrioformis DSM 265 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeovibrioides; 7.54796162 7.270646608 7.412262455 7.271161353 7.205998892 7.651578445 7717204 nifH Nitrogen Nitrogen fixation Vibrio diazotrophicus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.585899813 7.341473611 7.179196982 7.074780153 7.352882684 7.836659454 7.59189564 7.240493932 7.421784744 149175 nitA Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella; 7.08971846 7.603032489 7.056573617 6.857344675 224819719 pstB Stress Phosphate limitation Natrialba magadii ATCC 43099 7.551773506 7.551968784 7.448918977 7.226448873 7.470224524 7.716361964 7.612604404 7.262849627 7.700366764 247542720 phoA Stress Phosphate limitation Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 8.12524085 7.945937663 7.927425792 7.484533833 7.844075246 7.85778629 7.700274032 7.500209551 7.506040381 194565820 ArsC Metal Resistance Arsenic Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 8.164255377 8.074387738 7.787810192 7.88352957 7.841271839 8.020853492 7.768753345 7.87160424 7.470483906 198265449 hly virulence hemolysin Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 7.653635383 7.719455925 8.121788887 7.31675939 7.291795578 82743549 ZntA Metal Resistance Zinc Shewanella sp. W3-18-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 7.052143236 7.244835059 7.186603802 16412693 clpC Stress Protein stress Listeria innocua superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria; 7.126753271 7.402249347 7.014000202 214030380 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 6.907608871 6.668367855 7.663899558 6.898751836 7.826936681 6.97673432 6.867111063 260537323 sigma_24 Stress Sigma factors Prevotella veroralis F0319 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella veroralis; 7.607699093 7.816613517 7.91551191 7.800255167 7.507405529 8.081060984 7.356548982 7.567158954 7.444188853 15613120 ZntA Metal Resistance Zinc Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 7.133509804 7.309648085 148474758 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.794092737 7.865369257 7.276655038 7.381931936 62288577 DNA_polymerase_type_I Bacteria phage REPLICATION Enterobacteria phage RB43 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.624270251 7.361538288 7.461253293 7.454970179 7.496709478 38802 bco Organic Remediation Aromatics Aromatic carboxylic acid Acidaminococcus fermentans superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Acidaminococcus; 7.655455851 7.559762893 7.269973728 7.676277395 7.580890354 7.485056726 7.369899462 7.325477122 7.249841351 33243253 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.275196363 7.394017418 7.118425144 216325 amyA Carbon cycling Carbon degradation Starch Bacillus sp. B1018 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.277924901 7.227917096 7.281466921 6.969793529 7.293326493 7.334093418 13473384 ArsC Metal Resistance Arsenic Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 7.522426736 7.782616117 7.631738329 7.491373626 7.904130325 7.837228711 7.829321373 7.743847762 7.642383138 168261460 ppk Phosphorus Phosphorus utilization Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 7.302023344 7.238040166 7.239890171 6.806908111 7.138104476 7.312227002 7.140506965 6.857966037 78195153 pstC Stress Phosphate limitation Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 8.217556393 7.719753974 7.695356838 7.84452747 8.038825396 7.277031968 121712252 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7.591726031 7.682557601 7.788508933 7.487724464 7.58500979 7.945878708 8.04503823 7.697474441 7.734132437 163670401 sigma_70 Stress Sigma factors Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 7.776157773 7.467864825 7.39051265 7.589915587 254784983 ahpC Stress Oxygen stress Teredinibacter turnerae T7901 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 7.246508091 7.105666512 3445535 pheA Organic Remediation Aromatics Other aromatics Ralstonia sp. E2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 7.510843728 7.690421814 7.315137088 6.980793945 7.464655605 7.749439679 7.308745589 7.295812847 7.307250114 54307301 pimF Organic Remediation Aromatics Aromatic carboxylic acid Photobacterium profundum SS9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 7.454002657 7.403439329 7.176953807 7.301980851 6.978715524 222544000 sox Sulphur Sulphur oxidation uncultured sulfur-oxidizing bacterium superkingdom:Bacteria; 7.486625012 7.791355556 7.470539141 7.851468974 7.647746634 7.783814238 7.357962723 7.57857883 7.535771213 222110221 fnr Stress Oxygen stress Diaphorobacter sp. TPSY 7.264026294 7.315189977 7.139537758 7.067755844 7.474925137 189195828 pectinase Carbon cycling Carbon degradation Pectin Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7.628777352 7.361223189 7.413395527 7.661677868 214038558 akbF Organic Remediation Aromatics BTEX and related aromatics marine gamma proteobacterium HTCC2148 7.73941031 7.727133332 7.334459702 7.394907913 7.920237663 7.868824571 7.571816684 7.667578906 7.926985743 256827778 pstB Stress Phosphate limitation Cryptobacterium curtum DSM 15641 7.412470241 7.708540652 7.421216975 7.774178626 7.546154483 8.034031193 7.762096341 8.011556458 88786857 todF Organic Remediation Others Synechococcus sp. WH 7805 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 6.845426303 7.305829077 7.494334474 7.247397392 7.736583682 88083789 tfdA Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 7.468423274 7.386912755 7.43631727 7.41606948 7.685618448 13249555 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.358857449 7.393186867 7.110279694 6.936414926 7.356206345 7.551678786 7.181929948 7.544532669 7.510788294 158521609 mer Metal Resistance Mercury Desulfococcus oleovorans Hxd3 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus;species:Desulfococcus oleovorans; 8.048407024 7.768418046 7.422073591 7.548874928 7.461122143 7.887632307 7.556626999 7.569658892 7.647543098 262259283 AceB Carbon cycling Carbon degradation others Acinetobacter calcoaceticus RUH2202 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter calcoaceticus; 7.793051139 7.536936224 7.08506168 7.606940418 7.555156561 7.867696321 7.794410665 7.555595514 238696743 MFS_antibiotic Antibiotic resistance transporter Yersinia kristensenii ATCC 33638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia kristensenii; 7.341948269 7.293909277 7.802734485 196480470 grpE Stress Heat shock Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 7.619140658 7.573956941 7.303619186 7.430871392 7.891079099 237747586 ahpC Stress Oxygen stress Oxalobacter formigenes OXCC13 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Oxalobacter;species:Oxalobacter formigenes; 7.430005212 7.59633122 7.561813588 7.481877342 7.764306114 7.896868286 7.527565083 7.712678322 7.603610952 269848448 pstB Stress Phosphate limitation Anaplasma centrale str. Israel 7.754097938 7.696558135 7.826394516 7.699108947 7.939991435 8.099585201 7.939687851 7.995085701 8.144665495 146269604 gyrB other category gyrB Dehalococcoides sp. BAV1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 6.966242327 7.055893315 91780018 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.636824537 7.527340149 7.873070124 7.455366166 7.486644977 7.931701817 7.761986328 7.970779346 112462565 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 6.845565032 7.014894246 7.528540843 6.846720005 6.71770955 7.695470312 146273309 grpE Stress Heat shock Pelotomaculum thermopropionicum SI superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Pelotomaculum;species:Pelotomaculum thermopropionicum; 7.638452521 7.396391585 7.19527694 7.065845508 7.631868155 261372553 pstC Stress Phosphate limitation Fibrobacter succinogenes subsp. succinogenes S85 superkingdom:Bacteria;phylum:Fibrobacteres;class:Fibrobacteres;order:Fibrobacterales;family:Fibrobacteraceae;genus:Fibrobacter;species:Fibrobacter succinogenes; 7.925253446 7.976166649 7.323139649 7.586617046 7.851580251 7.722021559 7.596633191 7.535658745 7.792916325 127514137 cytochrome Energy process Energy process Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 8.018227752 7.573061666 7.28972475 7.567416126 7.730680499 7.567061128 237823283 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.629483997 7.494803974 7.40024397 7.395423761 7.214601697 7.184507937 7.399032842 7.167734178 66271242 gyrB other category gyrB Vibrio proteolyticus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.097775199 7.752358416 7.630220885 7.677407401 7.478793635 7.646053877 6.977267943 6.846233155 89361156 trzN Organic Remediation Herbicides related compound Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 7.288136535 7.518618908 7.499726697 7.805493927 7.4059647 226313632 sigma_24 Stress Sigma factors Brevibacillus brevis NBRC 100599 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus brevis; 7.590391608 7.619562162 7.396290466 7.267550645 7.378220628 7.642945612 7.397706516 7.171467941 7.310442527 111152782 amyA Carbon cycling Carbon degradation Starch Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 7.543266485 7.373753469 7.510216952 7.000469206 7.658787189 7.37644506 7.500812324 7.425254079 84687196 obgE Stress Radiation stress Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.658610235 7.763239869 7.712624856 7.885005664 7.966692681 7.824087162 7.863901888 8.096846419 7.626335672 255530792 ahpC Stress Oxygen stress Pedobacter heparinus DSM 2366 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter;species:Pedobacter heparinus; 7.384707224 7.142693403 215270885 sigma_70 Stress Sigma factors Vibrio parahaemolyticus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.493827299 7.332513307 6.97153388 7.421039825 7.487441724 7.803484724 158138875 narG Nitrogen Denitrification uncultured bacterium 7.352602927 7.174118925 7.082849129 6.856088118 7.514505014 88947825 ppx Phosphorus Phosphorus utilization Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 7.508506576 7.525940805 160937184 atzA Organic Remediation Herbicides related compound Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 7.482736303 7.68425973 7.658700323 7.388638227 7.162000953 7.769388342 7.341042144 7.349677097 7.364227052 20278843 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.388180016 7.19671027 7.189479064 7.245646867 6.882125866 7.603911457 7.116332895 7.245872048 218152183 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Desulfovibrio salexigens DSM 2638 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio salexigens; 7.372430626 7.350474341 7.544352763 7.471380706 7.281582979 7.878052113 7.291459039 7.626170132 7.703591393 119475370 gyrB other category gyrB marine gamma proteobacterium HTCC2143 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.216382341 7.510472146 7.433918808 6.855810461 7.039571593 7.685972295 7.242490705 7.174139677 7.28973992 158329483 ChrA Metal Resistance Chromium Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 7.429154641 7.313932838 7.140979735 7.162963358 7.231150658 7.590890248 7.395536214 7.354115844 7.468205588 3323367 hly virulence hemolysin Treponema pallidum subsp. pallidum str. Nichols superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema pallidum; 7.804747826 8.060052248 7.461114403 7.618271448 7.760681785 7.765696393 7.415915537 7.666533775 160878898 fnr Stress Oxygen stress Clostridium phytofermentans ISDg 6.898716253 7.123038256 49613219 SMR_antibiotics Antibiotic resistance transporter Erwinia carotovora subsp. atroseptica SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 6.996512174 7.097306569 7.172844876 7.347769421 6.75845155 6.989090084 7.099703048 7.059663312 167625352 narH Stress Oxygen limitation Shewanella halifaxensis HAW-EB4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella halifaxensis; 7.233756881 7.331689913 7.648559696 7.151116233 7.203776716 134292508 ArsC Metal Resistance Arsenic Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 7.502814713 7.324977107 6.883713217 6.986978105 17978817 pectinase Carbon cycling Carbon degradation Pectin Klebsiella oxytoca superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella; 7.280050014 7.254297784 7.679924145 6.925291693 7.881191111 7.389504916 7.107688062 83523622 nhh Organic Remediation Aromatics Nitoaromatics Rhodococcus pyridinivorans superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7.472958055 7.943480345 7.556793762 7.372567761 7.671505717 7.756285945 145298516 pstA Stress Phosphate limitation Aeromonas salmonicida subsp. salmonicida A449 7.863131543 8.090005605 7.490263455 7.436970669 7.709178182 8.054728971 7.606041428 7.55709623 7.61493802 221726948 ahpC Stress Oxygen stress Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.811645291 7.839081049 7.45997091 7.875330617 7.783285896 7.85615082 7.328338001 7.66397591 28855552 nmoA Organic Remediation Aromatics Nitoaromatics Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 7.769319317 7.54273116 7.445218755 7.270918516 7.120233712 8.080991324 7.182644957 7.37440123 32453659 terminase_small_subunit Bacteria phage REPLICATION Enterobacteria phage RB69 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 8.28282573 8.242466501 8.22154293 8.423312096 8.335035274 8.320134993 8.074720378 8.336854201 161328538 cytochrome Energy process Energy process Shewanella benthica KT99 7.61821108 7.422316963 7.283374853 7.473244712 7.583721969 7.548668905 7.856256949 7.299466902 7.671338101 110603923 CopA Metal Resistance Copper Methanoculleus marisnigri JR1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanoculleus;species:Methanoculleus marisnigri; 7.791584642 7.587980889 7.22369269 7.750986959 7.765894207 7.638387847 7.333417617 7.631062526 113866660 tftH Organic Remediation Aromatics Chlorinated aromatics Ralstonia eutropha H16 7.453236522 7.823894167 7.72636257 7.639474289 7.756733678 8.000306003 7.998027895 8.079626907 7.672694194 209959872 TehB Metal Resistance Tellurium Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 7.245920244 7.136292397 7.24455656 6.720480215 7.29165819 7.529596014 7.091450951 7.203522459 7.30832191 1835226 glucoamylase Carbon cycling Carbon degradation Starch Saccharomycopsis fibuligera superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycopsidaceae;genus:Saccharomycopsis; 7.383269665 6.653886284 90435338 TerC Metal Resistance Tellurium Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 7.75106673 7.529221904 7.992266482 8.528175161 7.587911519 8.074220282 7.432982787 7.853549999 7.895642198 148238940 SMR_antibiotics Antibiotic resistance transporter Synechococcus sp. WH 7803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.820842731 7.786363891 7.39997935 7.366309536 7.886092478 7.438085471 7.849293206 7.90687899 46115942 ara_fungi Carbon cycling Carbon degradation Hemicellulose Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 7.256351762 7.179579073 157285375 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.683832834 7.738672096 7.521405266 7.60260541 7.66368463 7.718017316 7.425647544 7.610550411 91191859 ahpF Stress Oxygen stress Vibrio alginolyticus 12G01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 8.06735147 7.770703172 7.375423428 7.942341025 7.775568463 7.686369962 7.623089736 7.740381438 227874695 amyA Carbon cycling Carbon degradation Starch Mobiluncus mulieris ATCC 35243 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus mulieris; 7.242251963 7.210130992 184197688 ahpC Stress Oxygen stress Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.974135038 7.440154731 7.731014029 7.707387468 7.298280821 7.775521798 13421377 linC Organic Remediation Pesticides related compound Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 7.938542635 7.95948613 7.585432677 7.603852281 8.216484055 7.992321527 8.09834422 7.721874308 7.999295468 197106659 cydA Stress Oxygen limitation Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 8.144914158 8.092195692 7.878586594 7.852357752 8.217148652 8.208838075 8.435159046 8.233761398 8.459710364 72122938 phtA Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.114160788 7.988609377 8.094317857 7.460990863 8.046135971 8.06171727 8.002626753 8.112284309 7.827558708 186475903 fnr Stress Oxygen stress Burkholderia phymatum STM815 7.924565019 7.804848921 7.447637063 7.539878063 7.085303105 7.526645777 7.665228357 7.596032572 7.270561675 49530110 MFS_antibiotic Antibiotic resistance transporter Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 6.897915829 6.93645097 7.296032186 23015317 ZntA Metal Resistance Zinc Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 7.496676201 7.305334906 7.670781248 7.817248585 7.987172145 7.505082605 7.278038984 124516537 cbb Bioleaching Carbon fixation Leptospirillum sp. Group II UBA 7.569467924 7.113186318 7.446848245 6.951759155 7.079646247 7.649302948 7.160878085 6.875810495 7.269527831 2645000 dnaK Stress Heat shock Pirellula staleyi 7.70359606 8.07107927 8.109259471 7.388493048 8.175864481 8.030418509 8.031760995 7.996015495 61224798 phenol_oxidase Carbon cycling Carbon degradation Lignin Pleurotus pulmonarius superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pleurotaceae;genus:Pleurotus; 7.585277366 7.168288102 7.318514483 7.515588047 7.188963866 7.281022305 7.109808493 7.56996298 127513209 cytochrome Energy process Energy process Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 8.057756245 8.06586864 7.582342103 7.689513716 7.551151046 7.815091407 226432443 endoglucanase Carbon cycling Carbon degradation Cellulose uncultured bacterium superkingdom:Bacteria; 7.821822196 7.736909438 8.111818044 7.87298745 7.564366353 8.090825239 7.832199542 7.856303135 7.624428462 29896168 pcc Carbon cycling Carbon fixation Bacillus cereus ATCC 14579 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 7.780527434 7.600078235 7.632234517 7.443587718 7.569928319 8.004839606 7.701605371 7.416015937 7.55384323 261308304 nrfA Nitrogen Dissimilatory N reduction Mannheimia haemolytica serotype A2 str. OVINE superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Mannheimia;species:Mannheimia haemolytica; 7.053573576 6.963918705 72527929 primase Bacteria phage REPLICATION Enterobacteria phage K1F 7.403436116 7.055808651 7.047688939 6.687059914 7.092378159 7.350278172 7.077653648 7.054612793 84362537 ChrA Metal Resistance Chromium Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 7.941311084 8.411209398 8.163856838 8.227915821 8.015851592 7.96191787 8.323515478 8.048518744 73763104 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.285915622 8.260062041 7.883413104 7.874276516 8.346506003 8.073398024 8.110524598 8.019078947 8.272460697 116191607 tfdA Organic Remediation Aromatics Chlorinated aromatics Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 7.501553506 6.991479733 262200860 clpC Stress Protein stress Gordonia bronchialis DSM 43247 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 7.973487139 7.839624598 7.615628773 7.714062919 7.407769063 7.162338509 7.196128057 7.496912513 262334170 sigma_24 Stress Sigma factors Rhodothermus marinus DSM 4252 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 7.772327246 7.924422977 8.297297973 8.170401463 7.958711192 8.596582087 8.405124363 8.361428758 8.184955929 108764682 pbrA Metal Resistance Lead Rubrobacter xylanophilus DSM 9941 7.488984714 7.516111222 7.671335506 7.603978328 7.2347147 7.806250023 7.367818347 7.369901207 7.851922238 116750317 phoB Stress Phosphate limitation Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 7.371561953 7.374169805 7.635713215 7.090549649 7.250458692 7.274055237 7.216407663 7.085338782 7.367737288 84517386 ppx Phosphorus Phosphorus utilization Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 7.664298029 7.470764207 7.514597715 7.19375226 7.327670911 7.567322613 170722903 glnA Stress Nitrogen limitation Pseudomonas putida W619 7.357747433 7.107692726 7.230076907 254980239 pstA Stress Phosphate limitation Nitrosomonas sp. AL212 7.159809888 7.077760323 7.160701791 7.044863454 7.158873894 7.599284542 237829566 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 7.214537963 7.44327762 7.059345218 7.333641346 7.030507675 6.993008924 7.326162822 55821282 srt virulence surface protein Streptococcus thermophilus LMG 18311 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus thermophilus; 7.195688312 7.039094334 6.994507009 6.664591839 6.610887645 7.38904262 6.640662 7.14341631 283821549 iro virulence Rhodomicrobium vannielii ATCC 17100 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 8.438825986 8.401042488 8.510916157 8.126550684 8.558228799 7.992192793 8.139627776 8.483925297 8.698171607 189420186 cytochrome Energy process Energy process Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 7.374244706 7.31408243 7.268665212 7.388507023 7.396247342 7.543467615 151281008 silC Metal Resistance Silver Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 7.686998468 7.531116277 7.38218355 7.301513776 7.412772351 7.921286443 7.529275195 7.324722124 7.436805036 33414637 T4_recomb_endonuclease Bacteria phage REPLICATION Aeromonas phage Aeh1 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.212449884 7.120387937 7.14365509 6.979347548 257149502 ABC_antibiotic_transporter Antibiotic resistance transporter Lactobacillus rhamnosus GG superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 7.220576522 7.233833714 217399535 amyA Carbon cycling Carbon degradation Starch Bifidobacterium gallicum DSM 20093 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 7.419431866 7.592429151 7.906739992 8.181966463 7.771828422 8.147302068 7.33196283 7.714273993 7.430503091 196193200 gyrB other category gyrB Alcanivorax sp. DG881 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 7.827436343 7.728400992 7.433943468 7.291682878 7.626445739 7.657491582 7.43928357 7.306951688 7.448750829 158138812 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.07882908 6.907347053 167772680 ChrA Metal Resistance Chromium Anaerotruncus colihominis DSM 17241 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Anaerotruncus;species:Anaerotruncus colihominis; 8.186963271 8.147561786 7.709626445 7.791717926 7.965160877 8.17466108 7.921221114 7.534164142 7.940403973 217972001 gyrB other category gyrB Shewanella baltica OS223 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 7.755160353 7.741530889 7.742340036 7.762591764 7.603861098 7.7683234 7.56493638 7.978965594 194365088 pstC Stress Phosphate limitation Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 8.04828239 8.075617651 8.283831731 7.888493408 8.070339226 7.806147936 8.496537699 7.954045083 152964468 ChrA Metal Resistance Chromium Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 7.592973875 8.065198949 8.129953755 8.329321298 7.924557796 8.357971358 7.888853382 7.8346443 8.246391806 116069400 fnr Stress Oxygen stress Synechococcus sp. RS9916 7.277723848 7.383994285 7.199637023 7.317485065 7.314618476 7.641121225 7.171148186 7.462818884 7.198992812 119459813 linB Organic Remediation Pesticides related compound marine gamma proteobacterium HTCC2080 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.520155725 7.332536991 7.255750458 7.005843363 7.363850676 7.974607736 7.314198587 6.853507296 7.258940291 83414221 gdh Nitrogen Ammonification Streptococcus sinensis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 7.827727101 7.463970818 7.895076739 6.959155211 7.243556692 7.807369228 7.112437452 7.726011334 218758143 glnA Stress Nitrogen limitation Desulfovibrio vulgaris str. 'Miyazaki F' 7.599429546 7.919905127 7.979423504 7.688102201 7.768759953 46908085 ZntA Metal Resistance Zinc Listeria monocytogenes str. 4b F2365 7.585833422 7.393657506 7.156545085 6.955864301 7.029507607 7.80175649 7.307595953 7.272120752 1399758 Mex Antibiotic resistance transporter superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.460205079 7.405357509 7.359843548 7.35726365 7.241363072 7.506070069 4580551 tfdB Organic Remediation Aromatics Chlorinated aromatics Sphingomonas sp. EML146 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 7.589097334 7.728586402 7.79639691 8.061416666 7.733602514 7.659528768 7.917026269 7.903036072 283567986 glnR Stress Nitrogen limitation Bacillus cellulosilyticus DSM 2522 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cellulosilyticus; 7.397847236 7.104306687 7.224163676 148653469 AceB Carbon cycling Carbon degradation others Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 6.915028116 7.445643006 261412893 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Aggregatibacter actinomycetemcomitans D11S-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Aggregatibacter;species:Aggregatibacter actinomycetemcomitans; 7.443716282 7.396934321 7.438969605 7.150771215 7.551942027 7.300662569 7.367694469 7.733401666 258648463 sigma_38 Stress Sigma factors Prevotella tannerae ATCC 51259 7.953701984 8.011562036 7.851513634 8.000988914 8.175135532 8.136920269 8.28596833 7.944921361 7.792485585 109899621 pstA Stress Phosphate limitation Pseudoalteromonas atlantica T6c 7.918385119 7.661241369 7.791977178 7.206027454 8.099853346 23494074 AceA Carbon cycling Carbon degradation others Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 8.205204054 7.584554179 7.82037517 7.829448487 7.741014885 8.076311665 7.696090594 7.820684534 9837268 endochitinase Carbon cycling Carbon degradation Chitin Coniothyrium minitans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;genus:Coniothyrium; 7.74679308 7.843758409 8.035782276 7.512810714 7.904437111 7.914168045 7.730408385 7.885189597 7.460960065 112441874 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 7.085217432 6.967708494 6.730190938 7.034808068 7.44852528 7.365707809 7.125986037 7.281658395 158510765 pstB Stress Phosphate limitation Desulfococcus oleovorans Hxd3 6.960025286 7.234739676 170718014 SMR_antibiotics Antibiotic resistance transporter Haemophilus somnus 2336 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Histophilus;species:Histophilus somni; 8.025311465 8.266803038 8.335078352 7.59004412 7.813257115 8.032852277 8.201757584 8.271097551 7.94129318 37724717 gyrB other category gyrB Bisgaard Taxon 37 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae; 7.507955502 7.310432079 7.509494014 7.910965916 7.310873561 7.434346472 7.241576681 121589113 fnr Stress Oxygen stress Halorhodospira halophila SL1 7.523087817 7.379522016 7.261980547 6.982127815 7.075629787 7.588918392 7.191475897 7.104604058 85826951 pcaG Organic Remediation Aromatics Other aromatics Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.374210457 7.416330388 7.039280125 196114108 sigma_32 Stress Sigma factors Alteromonas macleodii 'Deep ecotype' 7.124044859 7.4422456 261820283 grpE Stress Heat shock Pectobacterium wasabiae WPP163 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium wasabiae; 7.153586154 7.231578017 57640778 ArsC Metal Resistance Arsenic Thermococcus kodakarensis KOD1 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus kodakarensis; 7.703006736 7.414294358 7.243317226 7.224159505 154251022 pimF Organic Remediation Aromatics Aromatic carboxylic acid Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 10.29848714 10.14632345 9.967093454 71281445 pulA Carbon cycling Carbon degradation Starch Colwellia psychrerythraea 34H superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Colwelliaceae;genus:Colwellia;species:Colwellia psychrerythraea; 7.006836177 7.186225595 7.729567635 90105607 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.081017963 8.111384669 8.069171071 7.640043236 8.268867484 7.99366527 8.047291949 8.133069831 152979799 NirB Nitrogen Assimilatory N reduction Janthinobacterium sp. Marseille 7.947448303 7.870539118 7.73633628 7.851665766 7.840049844 7.975443186 7.714365072 7.72355381 7.825144873 34332839 type_III_secretion virulence secretion Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 7.474065828 7.256052662 6.803716566 6.815586043 198267775 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 7.967497257 7.999493179 7.915735583 7.757660264 8.285961224 8.129614494 8.061258793 8.084702458 283815230 sigma_24 Stress Sigma factors Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 7.142453891 6.976280008 6.744272503 7.306792295 20906853 atzA Organic Remediation Herbicides related compound Methanosarcina mazei Go1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina mazei; 7.541954382 7.244035764 103487310 ArsC Metal Resistance Arsenic Sphingopyxis alaskensis RB2256 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 8.042309989 7.963602728 7.566259204 7.497050428 7.774300744 8.286392783 7.765837849 7.740301966 7.847356422 90414606 AceB Carbon cycling Carbon degradation others Photobacterium profundum 3TCK superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 7.987475225 7.769322417 7.740274806 7.529069043 7.773995407 7.549797756 7.659248481 229476650 sigma_24 Stress Sigma factors Planctomyces limnophilus DSM 3776 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces limnophilus; 7.544722608 7.608940214 7.483356017 7.34993454 7.69438758 163748434 ahpC Stress Oxygen stress Shewanella benthica KT99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella benthica; 7.33505644 7.373947101 7.447765384 6.886438407 6.95132569 7.571628877 7.48414051 7.11965982 7.473399907 222102303 nmoA Organic Remediation Aromatics Nitoaromatics Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.485115784 7.638441766 7.098294382 7.73405815 7.724410538 7.700694633 7.362708785 7.442794978 134099988 pimF Organic Remediation Aromatics Aromatic carboxylic acid Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 7.640050106 7.612171645 7.766456401 7.551957122 7.68188669 7.926269656 7.713002664 7.868922754 7.4497073 223935790 acetylglucosaminidase Carbon cycling Carbon degradation Chitin bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 7.675495312 7.604442419 7.397638967 7.097334026 7.126872275 7.239314334 7.641558246 118424335 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.265522276 6.805186614 7.392963665 7.006639896 7.062999267 7.379289382 7.361447985 89055891 sigma_32 Stress Sigma factors Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 8.148596275 7.945736409 7.94516394 7.948171304 7.739892147 8.378964868 7.880190786 7.918008338 7.60880856 85817511 AceA Carbon cycling Carbon degradation others Dokdonia donghaensis MED134 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Dokdonia;species:Dokdonia donghaensis; 6.841012302 6.925046222 27352761 nhh Organic Remediation Aromatics Nitoaromatics Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.396080158 6.895880078 7.405747285 7.313461722 7.268554144 67940432 dsrB Sulphur sulfite reductase Chlorobium phaeobacteroides BS1 7.298745076 7.330693349 7.206646453 6.631135238 7.742478947 258620488 oxyR Stress Oxygen stress Vibrio mimicus VM573 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 7.294068719 7.007069127 7.804495354 7.690625119 7.313850081 7.712546054 7.452417051 7.599253045 283784165 pap virulence adhesin Citrobacter rodentium ICC168 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 7.612344068 7.634207224 7.559901968 7.549954045 8.225605787 7.932740916 8.03007144 7.538043103 8.037551854 54018890 grpE Stress Heat shock Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 7.860544746 8.17731801 8.119362994 7.594184819 8.524620187 7.778485665 8.124829339 8.208818427 8.276189413 260426315 ahpC Stress Oxygen stress Citreicella sp. SE45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 7.537318048 7.623948008 7.469941876 7.623829611 7.522540866 7.646560635 7.123214553 7.412079383 161166762 sigma_24 Stress Sigma factors Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 8.153567581 7.975322626 7.683419939 7.980472259 7.942844053 8.101848516 7.779533982 7.785962653 7.901521142 76883675 pcc Carbon cycling Carbon fixation Nitrosococcus oceani ATCC 19707 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 7.296259877 7.490268569 7.245603373 7.044950054 7.348515205 7.61621201 7.534916499 7.340992595 7.440324596 148979399 gyrB other category gyrB Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 6.942976321 6.828480867 7.152457827 262276139 pstB Stress Phosphate limitation Grimontia hollisae CIP 101886 7.328083951 7.514234916 7.737263864 6.918690081 7.52424528 7.767589124 7.619142072 7.723730954 7.307846383 148554884 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 7.474842184 7.803685019 7.664507262 7.924199087 8.158466085 7.87094785 7.715495123 7.572332234 118618585 nifH Nitrogen Nitrogen fixation Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 7.580975657 7.294530471 212672358 cydA Stress Oxygen limitation Desulfovibrio piger ATCC 29098 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio piger; 7.28556597 7.127602376 7.024132173 7.113056149 7.748574604 7.685836003 7.432531743 6.923577254 7.636165953 161075667 mauAB Organic Remediation Herbicides related compound Verrucomicrobiae bacterium V4 superkingdom:Bacteria;phylum:Verrucomicrobia;order:Methylacidiphilales;family:Methylacidiphilaceae;genus:Methylacidiphilum;species:Methylacidiphilum infernorum; 7.032941904 7.02710454 7.254095796 7.155258495 7.211813732 7.412303811 7.500555103 7.106857439 62425820 mhpA Organic Remediation Aromatics Aromatic carboxylic acid Brevibacterium linens BL2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium linens; 7.505007127 7.57187223 7.520532614 7.992154012 7.767435602 8.083189405 7.461073709 116694785 fnr Stress Oxygen stress Ralstonia eutropha H16 7.281895578 7.276966123 7.228030339 7.38101494 242277971 fnr Stress Oxygen stress Desulfovibrio salexigens DSM 2638 8.302657938 8.048524729 7.999771289 8.251964158 8.204562246 8.345903706 8.03124203 7.869190801 7.921693112 134267686 obgE Stress Radiation stress Geobacillus thermodenitrificans NG80-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermodenitrificans; 7.445501877 7.379729076 6.985000918 7.668934838 89890912 pimF Organic Remediation Aromatics Aromatic carboxylic acid Flavobacteria bacterium BBFL7 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria; 7.520857805 7.356992539 7.753198916 7.812414362 7.657533871 8.141884919 7.533674797 7.565206384 7.267998555 90110618 contractile_central_tail_tube_protein Bacteria phage STRUCTURAL Mannheimia phage phiMhaA1-BAA410 order:Caudovirales;family:Myoviridae;genus:P2-like viruses;species:Mannheimia phage phiMHaA1; 7.073626829 7.690765791 7.730668807 7.666121531 7.199312467 7.939761243 7.501516159 7.023834492 7.642876538 58530664 gyrB other category gyrB Ferrimonas marina superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Ferrimonadaceae;genus:Ferrimonas; 7.316416806 7.348188308 7.303702827 7.139855364 7.232307793 7.227634064 218761272 sigma_24 Stress Sigma factors Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 7.547628509 7.501956719 8.164018465 8.310942068 8.152363224 8.310161161 8.508562853 8.339659817 8.566476339 220711645 silC Metal Resistance Silver Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.860645662 7.832802961 7.652954853 7.197388887 7.590666302 7.761869198 7.498907205 7.469414027 7.432249699 109700065 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 7.097034659 6.873644067 17741509 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.67818339 7.774080052 7.653868407 7.49137864 8.118468476 8.028567944 7.830046455 7.72009816 7.521250019 167668450 hrcA Stress Heat shock Anaerotruncus colihominis DSM 17241 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Anaerotruncus;species:Anaerotruncus colihominis; 8.00867625 7.866495889 8.113491337 7.788687527 8.192809123 7.938889804 8.259604855 7.945402398 8.040899324 60476235 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.535423884 7.591552886 7.290839191 6.980676416 7.439147669 109632419 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.61914744 7.579411194 7.402965348 7.360489263 7.384836683 7.765711593 7.604942996 253573679 mannanase Carbon cycling Carbon degradation Hemicellulose Paenibacillus sp. oral taxon 786 str. D14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 7.359241521 7.269998715 7.235516874 6.974554093 7.086153945 7.746049527 7.527238106 7.094094749 7.389875218 119504971 sigma_70 Stress Sigma factors marine gamma proteobacterium HTCC2080 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.098480718 7.057361483 7.483496192 6.958912842 7.451242964 120597953 CadA Metal Resistance Cadmium Shewanella sp. W3-18-1 6.953478853 7.23881499 7.67519884 7.437063766 7.490171455 7.647223523 7.582750153 7.304245951 7.447383219 152992346 ahpC Stress Oxygen stress Sulfurovum sp. NBC37-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;genus:Sulfurovum; 7.565807667 7.372648168 7.339005835 6.944308051 7.112124634 7.440041579 7.333933095 7.084994026 7.248419682 124259913 pimF Organic Remediation Aromatics Aromatic carboxylic acid Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 7.366286474 7.105650687 6.995889465 226093764 ahpC Stress Oxygen stress Brevibacillus brevis NBRC 100599 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus brevis; 7.476129297 7.449791714 7.424894932 7.041733951 7.233024191 153010714 MFS_antibiotic Antibiotic resistance transporter Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 7.601212369 7.639917817 7.63566421 6.954322525 7.208683647 7.454431092 7.416564486 7.37463851 7.68476446 84043121 pcaG Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 7.68609953 7.576671731 7.845742149 7.353071197 7.288443393 7.946158597 7.602532643 7.944866146 260880885 amyA Carbon cycling Carbon degradation Starch Vibrio parahaemolyticus AN-5034 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.191538756 7.309803994 7.484703884 7.005854268 7.096535155 7.579047838 7.293178552 7.159576589 7.387496443 229539789 B_lactamase_C Antibiotic resistance Beta-lactamases Planctomyces limnophilus DSM 3776 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces limnophilus; 7.349051762 7.351821774 7.624491729 7.36507275 7.297051654 7.511610959 7.358237191 7.612385395 212638678 dnaK Stress Heat shock Anoxybacillus flavithermus WK1 7.264790495 7.134074608 88176149 nagG Organic Remediation Aromatics Aromatic carboxylic acid Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 7.571768712 7.668035149 7.576208214 7.548850592 7.199001362 7.586748668 187720055 silC Metal Resistance Silver Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.512088831 7.280147342 7.549099541 7.93883036 6.828970163 8.174643591 7.395643687 7.915721248 85711018 gyrB other category gyrB Idiomarina baltica OS145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina baltica; 7.552315249 7.456896767 7.448567927 6.880024758 7.283064161 7.549443356 7.529160045 7.382227209 7.470104156 19909571 gyrB other category gyrB Brevundimonas bacteroides superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas; 7.398489068 7.55573638 7.509400777 7.321747467 7.54252421 7.600967205 7.5628571 68164676 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.264587691 7.191985971 10175621 arsB Metal Resistance Arsenic Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 7.120328466 7.264158969 7.378509147 34604741 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.772076657 8.158391038 8.18274712 8.199385943 8.428934163 8.616388051 8.249740876 8.454075848 221069113 ChnA Organic Remediation Other Hydrocarbons Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.491810873 7.881187825 8.44613844 8.301138595 8.354564362 8.308360142 119898878 atzA Organic Remediation Herbicides related compound Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 7.198222675 7.194357333 7.326945351 6.901727131 7.214874731 7.946651506 7.428561983 7.037128039 270291528 xylA Carbon cycling Carbon degradation Hemicellulose Pediococcus acidilactici 7_4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Pediococcus;species:Pediococcus acidilactici; 7.849386732 7.926529806 7.560073881 7.415108898 7.779797323 8.148202763 7.738280044 7.705293236 7.680028635 119369912 gyrB other category gyrB uncultured bacterium superkingdom:Bacteria; 7.603240189 7.985077718 7.533213439 7.845235476 7.633498545 7.790671998 7.873891156 12667664 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium UMTRAdsr828-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 8.054715738 7.62422963 7.234926832 7.203172036 7.837658632 7.93014309 7.499091908 7.584751926 15807216 TerD Metal Resistance Tellurium Deinococcus radiodurans R1 7.065367123 7.339144723 7.478273415 7.639365675 8.013366519 7.399915801 7.240230649 7.837321408 115398630 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 8.953345672 8.999996449 8.357518597 8.927433665 8.795168961 8.518507197 8.700593896 8.730859628 8.089193354 169241462 AceB Carbon cycling Carbon degradation others Mycobacterium abscessus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.530564855 7.791955289 7.849811525 7.907365107 7.888664266 8.084043505 8.191883118 8.086904215 8.259113577 186475214 pilin virulence pilin Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.682173914 7.303785319 7.417890568 7.370301443 7.574586946 7.564575057 7.277074268 7.488448462 225793530 pstC Stress Phosphate limitation Acidobacterium capsulatum ATCC 51196 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteria;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 8.00032563 7.929010512 7.985662089 7.443006246 7.812382448 7.885139509 7.695873886 7.843011416 7.650327816 117922435 cytochrome Energy process Energy process Shewanella sp. ANA-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 7.72386122 7.99281626 7.65327568 7.718283823 8.232360706 8.050380725 7.72817387 8.005157199 858748 katE Stress Oxygen stress Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 7.470970921 7.704395295 7.73432264 7.852656182 7.722387068 7.806856725 7.784405109 7.776173474 8.241234856 90302795 ZntA Metal Resistance Zinc Coccidioides immitis RS 7.210991295 7.277222996 7.892162507 7.728196376 7.345572083 7.928343921 7.397027438 7.333722883 7.724006828 254406456 Tet Antibiotic resistance other Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 7.567054147 7.606624617 7.686578301 7.283650624 7.978733312 7.758530254 7.421131247 7.473807805 7.559486002 125717783 pstB Stress Phosphate limitation Streptococcus sanguinis SK36 6.655847093 7.236891713 169117845 mer Metal Resistance Mercury uncultured organism 7.264762546 7.115093858 6.94583304 160428901 nitA Organic Remediation Aromatics Other aromatics Clostridium phytofermentans ISDg superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium phytofermentans; 7.084838835 7.181917421 7.031542688 6.802573512 7.34690879 35213628 akbD Organic Remediation Aromatics BTEX and related aromatics Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 7.855259433 7.943400911 7.765062561 7.472926593 8.054544096 8.298966553 8.413018468 8.721663672 91715935 pstB Stress Phosphate limitation Shewanella denitrificans OS217 7.274344903 7.167436684 6.745174681 7.396679077 194538632 nrfA Nitrogen Dissimilatory N reduction Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.39925672 7.408210204 7.664690887 6.94829968 7.119965834 119865886 phn Organic Remediation Herbicides related compound Psychromonas ingrahamii 37 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas;species:Psychromonas ingrahamii; 7.492859733 7.239192482 7.331161923 7.369427993 7.767822678 255991668 sigma_24 Stress Sigma factors Clostridium thermocellum DSM 2360 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 7.300724155 7.094531489 7.142461849 169824252 pilin virulence pilin Finegoldia magna ATCC 29328 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Finegoldia;species:Finegoldia magna; 7.307820471 7.31055167 7.134741108 7.049443411 7.173909489 85832772 katE Stress Oxygen stress Leeuwenhoekiella blandensis MED217 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Leeuwenhoekiella;species:Leeuwenhoekiella blandensis; 7.328879023 7.352180668 7.375199121 7.176889308 156719476 arsB Metal Resistance Arsenic Hydrogenobaculum sp. Y04AAS1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenobaculum; 7.548589615 7.721603606 7.187594194 7.235006073 209899805 CopA Metal Resistance Copper Enterobacter cancerogenus ATCC 35316 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 7.784050722 7.30899605 7.792260764 7.2002914 7.547654037 7.826816679 7.559952836 7.752083879 7.442765315 209966125 dnaK Stress Heat shock Rhodospirillum centenum SW 7.362306738 7.854732097 7.92059164 8.235145022 7.614809468 7.498227502 7.680177148 8.062720518 123992559 TehB Metal Resistance Tellurium Microscilla marina ATCC 23134 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Microscilla;species:Microscilla marina; 7.647040815 7.812449447 7.834979642 73541707 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.043141365 7.307212479 8.070247257 7.628830256 8.166685493 8.099245822 8.113107985 7.87012157 218151453 CopA Metal Resistance Copper Desulfovibrio salexigens DSM 2638 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio salexigens; 7.53041921 7.417849601 7.632533625 7.150509127 7.66310661 7.886778694 7.602035386 7.510259714 146310629 Arylest Organic Remediation Aromatics Other aromatics Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 7.4205308 7.722135237 7.693527748 7.84935447 7.919701115 7.985917335 7.597924601 7.691257431 7.380266942 77964406 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.531899356 7.444766513 7.025256032 7.021410214 218356871 tutFDG Organic Remediation Aromatics BTEX and related aromatics Escherichia fergusonii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 7.246120024 7.610345075 7.383744556 7.557654804 7.70090113 7.735958634 7.586331947 7.391303559 7.367497755 188592238 bphD Organic Remediation Aromatics Polycyclic aromatics Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 7.524440023 7.736329427 8.351280715 8.380810859 8.181415229 7.928058378 8.030780909 8.110390954 7.931731194 209538311 CopA Metal Resistance Copper Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.315946444 7.510234376 7.82390096 7.576547057 7.595196205 8.063427733 7.621169788 7.787256357 7.706980531 115253852 nahA Organic Remediation Aromatics Polycyclic aromatics Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.103220408 8.179803214 8.008714331 7.552980853 8.079699919 7.882313549 7.788033074 7.597468275 7.904089145 163731790 SMR_antibiotics Antibiotic resistance transporter Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 7.967669978 7.279132325 7.834726107 7.327885259 7.334434809 7.432692854 7208816 exoglucanase Carbon cycling Carbon degradation Cellulose Clostridium thermocellum superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 8.085160624 7.660180968 7.946839261 7.747489796 7.645557742 7.640502892 7.672505731 7.697305231 212685990 CopA Metal Resistance Copper Providencia alcalifaciens DSM 30120 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 7.358504228 7.223754602 7.261026378 7.023882006 6.891456526 7.425708308 7.010761221 7.245034713 254405624 amyA Carbon cycling Carbon degradation Starch Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 7.466753363 7.145202066 7.383608618 7.511374717 7.37705061 7.208360034 6.897244869 145295302 tftH Organic Remediation Aromatics Chlorinated aromatics Corynebacterium glutamicum R superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 7.332959528 7.331872932 7.024525064 6.987529497 153008256 merP Metal Resistance Mercury Ochrobactrum anthropi ATCC 49188 7.263644627 7.480520124 7.760956436 7.617920818 7.163617021 7.193383446 13358812 gyrB other category gyrB Bacteroides fragilis superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 7.100259795 7.373344834 7.363076308 7.309074988 7.026424098 7.347517866 7.123603823 163262093 fnr Stress Oxygen stress Bordetella petrii 8.06924604 7.758853787 7.453335894 7.367065711 7.569974094 7.791808873 7.588951885 7.122769603 7.452928308 161521571 iro virulence Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 7.578147583 7.830257429 7.470048637 8.089921711 8.171065652 7.967831114 7.851764665 32446489 Mex Antibiotic resistance transporter Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 7.494733572 7.455898008 7.449966722 6.981221981 7.295010606 7.471541835 7.11943475 7.397112499 156050015 nagG Organic Remediation Aromatics Aromatic carboxylic acid Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 7.301755403 7.085133193 6.967271528 7.01154633 7.442252306 7.439731579 6.800896184 124483570 gyrB other category gyrB Herbaspirillum seropedicae superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum; 7.479392432 7.683717189 7.718501872 7.283839732 8.002412523 7.845726329 7.737064036 7.777907477 247536277 gyrB other category gyrB Dickeya zeae Ech1591 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 8.296531893 8.219474254 7.97088937 7.831157218 8.09040893 7.988163833 8.038118307 113971577 iro virulence Shewanella sp. MR-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 7.474875222 7.693100279 166090287 cadBD Metal Resistance Cadmium Microcystis aeruginosa NIES-843 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 7.19880641 7.007150339 7.164886513 6.669245259 7.454512866 51571870 sigma_24 Stress Sigma factors Shewanella violacea superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 7.101354497 6.915083222 228015265 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.068004349 7.630686426 7.220356003 7.351180437 7.56895905 7.387427303 7.132956702 7.422415899 158138747 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.740943794 7.947522766 7.706532576 7.653448036 7.893333471 7.96356486 7.979896007 8.131116629 119718010 CopA Metal Resistance Copper Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 7.51622785 7.468105613 7.86299041 8.116792112 7.41934824 7.515874743 7.546097082 7.669152693 46307969 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6.982285277 7.200957594 7.14329795 6.696077575 6.979161091 160917478 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.325527911 7.572525045 7.559824816 7.098953998 6.935121252 7.317231847 7.383679995 7.432327361 184191249 sigma_24 Stress Sigma factors Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.711089843 7.491774368 7.347477642 7.104510422 6.959165749 7.762524296 88812881 AceB Carbon cycling Carbon degradation others Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 7.670511242 7.641510409 7.684816718 7.279185134 7.529546009 224612976 dsrB Sulphur sulfite reductase Thermodesulfatator sp. AT1325 superkingdom:Bacteria;phylum:Thermodesulfobacteria;class:Thermodesulfobacteria;order:Thermodesulfobacteriales;family:Thermodesulfobacteriaceae;genus:Thermodesulfatator; 7.234144747 7.149614527 6.862736675 7.366903195 7.16041543 7.016566063 121634088 pilin virulence pilin Neisseria meningitidis FAM18 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria meningitidis; 7.17984378 7.19104145 6.981434688 6.939476535 7.592567639 7.120839314 7.099372396 7.292298565 118568898 chnB Organic Remediation Other Hydrocarbons Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 7.5677703 7.58312652 7.245841192 7.123021949 7.763166651 7.410075245 7.511227223 32307669 rubisco Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.768318309 7.605776601 7.553783208 7.3099391 7.316367944 7.515951731 7.455184413 7.687274901 7.298020594 126470044 bphC Organic Remediation Aromatics Polycyclic aromatics Rhodococcus rhodochrous superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7.301473099 7.104907483 7.307096296 7.217293189 6.89602616 183178983 phenol_oxidase Carbon cycling Carbon degradation Lignin Trametes hirsuta superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 7.721099045 7.724248452 7.39495938 7.170324569 7.7699293 8.081371814 7.474085723 7.717107391 146270119 sigma_70 Stress Sigma factors Dehalococcoides sp. BAV1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 8.110003695 7.908858309 7.93623924 7.264571766 7.787408686 7.32371013 7.753967642 7.251789465 7.570058528 156565865 aclB Carbon cycling Carbon fixation Ignicoccus hospitalis KIN4/I superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Ignicoccus;species:Ignicoccus hospitalis; 8.550773607 8.51383994 8.079102063 7.707407758 8.178206334 8.036444675 7.87865179 8.207246081 206567312 ArsC Metal Resistance Arsenic Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 7.738258657 7.843107494 7.539875399 7.793909332 7.995400357 8.090778291 7.947055966 7.614257913 7.692709108 213965450 iro virulence Corynebacterium amycolatum SK46 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium amycolatum; 7.166171268 7.710015786 7.947190257 7.528185641 7.792720676 7.47444516 7.848763873 7.65058343 7.819750303 256533446 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 7.45443177 7.534809988 7.679204388 7.943173554 7.775424801 7.804931561 iegAssA2 AssA Carbon cycling Carbon degradation Others 6.735233799 7.121295097 7.190501435 77415801 cytochrome_b Bioleaching Electron transport Acidianus ambivalens 7.272330002 7.000237654 6.674259107 7.517122729 34017160 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.377371285 7.651225078 7.613841529 7.120646684 7.835213819 7.544845052 7.477112553 7.479790006 208605294 hao Nitrogen Nitrification Candidatus Anammoxoglobus sp. enrichment culture clone HZO2 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;genus:Candidatus Anammoxoglobus; 6.941527406 7.1585845 7.200218728 6.843047169 7.570186656 84514910 hrcA Stress Heat shock Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 7.682686769 7.731038762 7.3719991 6.991157783 7.761231761 7.937882797 7.952129568 7.433994837 7.661310958 126697571 gyrB other category gyrB Clostridium difficile 630 7.08772364 6.676572399 7.016508902 91774359 gyrB other category gyrB Methylobacillus flagellatus KT superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 7.224082223 7.188446059 23393005 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.40067877 7.00403571 7.262027643 6.903775661 7.013095624 6.950471465 6.981953962 91189164 pap virulence adhesin Vibrio alginolyticus 12G01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 7.607885619 7.954066899 7.625258141 7.017631037 7.317021881 7.4201396 7.350284842 7.640448713 194291386 NirB Nitrogen Assimilatory N reduction Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 7.055478847 7.491410557 7.506761621 7.830407647 7.025976633 6.815363827 7.697761636 148498461 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.036562083 8.048879318 8.258571908 7.449473272 8.117333073 7.844221854 7.869905931 7.851910919 8.116839735 119534977 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 7.978176391 7.780389457 7.839226571 7.523571583 8.097458073 7.734195567 8.143509846 7.893901584 8.084147559 88858043 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Pseudoalteromonas tunicata D2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas tunicata; 7.292617598 7.044820584 7.186327902 6.853140347 6.694923505 7.428875562 171185022 pstC Stress Phosphate limitation Thermoproteus neutrophilus V24Sta superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus neutrophilus; 7.651942421 7.750963048 7.25408938 7.472094882 7.160372854 7.657123765 7.680444353 255063948 pstB Stress Phosphate limitation Nitrosomonas sp. AL212 7.556530407 7.245766109 7.218002832 6.913055732 6.960758564 7.56871894 7.160680714 6.929593583 7.227548154 2822275 CDD Organic Remediation Aromatics Other aromatics Pseudomonas putida 7.447124531 7.535575283 7.295424123 7.449972438 7.487178828 77378622 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.660425246 7.869513584 7.389846574 7.281779243 7.510011048 7.663153792 6.965570464 7.48988663 152973823 SMR_antibiotics Antibiotic resistance transporter Klebsiella pneumoniae subsp. pneumoniae MGH 78578 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 8.056095627 7.568286893 7.498682203 7.481674662 7.702811225 7.775066346 145249240 tfdB Organic Remediation Aromatics Chlorinated aromatics Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.10469527 7.206891449 7.203579214 6.94952703 7.169549377 7.633538587 169259306 ChrA Metal Resistance Chromium Anaerofustis stercorihominis DSM 17244 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Anaerofustis;species:Anaerofustis stercorihominis; 7.643059805 7.039534949 7.472422575 254504604 ureC Nitrogen Ammonification Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 8.992811076 8.634735665 8.265064893 8.790718028 8.743169218 8.333784846 8.546835717 8.54002575 225701137 amyA Carbon cycling Carbon degradation Starch Streptococcus equi subsp. zooepidemicus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus equi; 6.951024316 7.263063861 270322738 sigma_24 Stress Sigma factors Micromonospora aurantiaca ATCC 27029 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora aurantiaca; 7.876677172 7.466846243 7.44109027 7.958084815 7.89830923 7.945173737 7.948165596 118424412 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.002007309 7.910161176 7.95961716 7.141464262 7.848786823 7.719471166 7.728071507 7.927560469 7.684261883 172039872 AceB Carbon cycling Carbon degradation others Corynebacterium urealyticum DSM 7109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium urealyticum; 7.786145464 7.673985131 7.972430085 7.007506617 7.572019082 7.832821192 7.409361177 7.687397363 7.638447346 178466023 TerD Metal Resistance Tellurium Streptomyces griseus subsp. griseus NBRC 13350 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 7.603649372 7.652798108 7.636818463 7.204186389 7.642129981 7.627644072 7.407649806 7.235239113 7.539147357 260364216 pap virulence adhesin Vibrio parahaemolyticus K5030 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 8.215468838 7.994465223 7.678017892 8.136503599 8.003491417 8.094139138 8.051887296 206895598 gyrB other category gyrB Coprothermobacter proteolyticus DSM 5265 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermodesulfobiaceae;genus:Coprothermobacter;species:Coprothermobacter proteolyticus; 7.352992808 6.950486585 7.307742296 6.778715175 7.536633405 6.965801469 7.251621528 119669485 CorC Metal Resistance Cobalt Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 7.564396505 7.497410731 7.281602414 7.221723187 7.389013785 7.602824041 7.281459865 7.608563987 50084780 oxdB Organic Remediation Aromatics Nitoaromatics Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 7.425992276 7.463238509 7.311300046 6.836900093 7.593421659 7.658224574 7.822237444 7.31810808 7.753871105 158423070 4HBH Organic Remediation Aromatics BTEX and related aromatics Azorhizobium caulinodans ORS 571 7.719339322 7.669925659 8.046433879 7.090120792 7.819627502 7.710632896 7.655624644 7.939241862 7.393584182 43913 pulA Carbon cycling Carbon degradation Starch Klebsiella pneumoniae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella; 7.274329629 7.092679605 7.190353921 6.884434899 209401774 narG Nitrogen Denitrification uncultured bacterium 8.23782282 8.20914755 8.065817959 8.067931022 8.219885138 8.117019141 8.146403775 8.081692875 7.711243995 111019219 nmoA Organic Remediation Aromatics Nitoaromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.449364681 8.324096887 8.218948249 8.100829158 8.451374521 8.200440282 8.188843239 8.523650927 209916773 Catechol Organic Remediation Aromatics Other aromatics Pseudomonas sp. B3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.554589737 7.695345339 7.382328985 8.217832377 8.141024134 8.146839424 8.086136404 120597940 CopA Metal Resistance Copper Shewanella sp. W3-18-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 7.491284229 7.621882252 7.53990437 7.148892626 7.48197003 7.489641989 8.054379121 88701072 linB Organic Remediation Pesticides related compound Congregibacter litoralis KT71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 7.172092278 7.075573011 7.324161913 7.091807872 6.973382842 145244929 ahpC Stress Oxygen stress Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.662176771 7.729832761 7.403187489 7.435210987 7.749376481 7.55580756 7.651759439 7.984010041 7.958370064 86163569 phoB Stress Phosphate limitation Marinomonas sp. MED121 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 7.32586348 7.445450978 7.388945314 7.020942866 7.221528959 7.605691686 7.287726613 7.470907329 261855316 sigma_24 Stress Sigma factors Halothiobacillus neapolitanus c2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Halothiobacillaceae;genus:Halothiobacillus;species:Halothiobacillus neapolitanus; 7.58688032 7.698361603 7.626738103 7.566465766 7.998321738 7.961034845 8.031493797 7.942860538 7.885388973 2267070 gyrB other category gyrB Pseudoalteromonas luteoviolacea superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 7.298774256 7.305940883 7.58065969 7.116184357 7.320445336 7.879653024 7.363371123 7.710048117 7.546850388 149771142 MFS_antibiotic Antibiotic resistance transporter Flavobacterium psychrophilum JIP02/86 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium psychrophilum; 7.028754819 7.185366514 113726797 trzN Organic Remediation Herbicides related compound Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 7.469590518 7.550675511 7.331943667 7.137517591 7.119424471 7.500994527 7.168975991 7.002749438 7.286430484 146327852 phenol_oxidase Carbon cycling Carbon degradation Lignin Lentinus tigrinus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Lentinaceae;genus:Lentinus; 7.104312694 6.569775929 6.875646089 6.852224317 7.307721308 6.814200882 6.785600306 84509575 pimF Organic Remediation Aromatics Aromatic carboxylic acid Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 7.6753257 7.386066032 7.056489902 7.249132034 7.18914051 7.634609796 7.193349197 7.092838014 7.337356576 77546352 sigma_70 Stress Sigma factors Pelobacter carbinolicus DSM 2380 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter carbinolicus; 7.568006057 7.721094144 7.652214418 7.484017078 7.586590423 7.277711082 7.440276041 118071251 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 7.549990055 7.736049216 7.348858484 7.399038341 7.672366115 7.824771357 7.696312633 7.434169027 7.786685814 123228322 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.294247412 7.103439128 219965724 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.632746436 7.408117973 7.081122127 7.35231883 7.412636027 7.772216571 7.451870952 7.270078244 7.644517773 26106263 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Pseudomonas resinovorans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.040765544 7.803288839 7.677654697 7.245691978 7.545609699 7.798659152 7.61124337 7.643288757 7.083623772 4220430 phdJ Organic Remediation Aromatics Polycyclic aromatics Ralstonia sp. U2 7.436856289 7.678910367 7.263025521 7.509224273 7.507489675 8.07472388 7.277883825 7.61571704 281195593 sigma_70 Stress Sigma factors Cylindrospermopsis raciborskii CS-505 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Cylindrospermopsis;species:Cylindrospermopsis raciborskii; 7.263394075 7.577652231 7.38532193 7.195711009 7.100302269 7.594945974 7.219692414 7.198343804 7.444220499 251827406 pstA Stress Phosphate limitation Gallionella ferruginea ES-2 7.779208479 7.597359372 7.485128289 7.526881811 7.775869927 7.857366172 7.942117477 7.782521582 7.980037743 83404768 nirS Nitrogen Denitrification uncultured organism 7.363085451 7.48239738 7.065348943 7.268996314 7.737420608 7.295873435 7.05848643 7.185109428 151282074 bphA Organic Remediation Aromatics Polycyclic aromatics Janthinobacterium sp. Marseille 7.666419161 7.04018417 6.937215618 257780572 glnA Stress Nitrogen limitation Desulfotomaculum acetoxidans DSM 771 7.340210262 6.93404592 7.2351805 157781885 nirK Nitrogen Denitrification Azospirillum brasilense superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum; 7.348778956 7.345651333 7.675189386 7.41504543 7.3454315 7.400716641 7.274729707 7.802358493 118038545 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.553781365 7.62027181 7.147302661 7.481136632 7.80151429 7.660918637 30909240 ArsC Metal Resistance Arsenic Agrobacterium sp. 5A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 7.903192364 8.465839593 8.212675852 8.516643123 8.343381393 8.41248106 8.030889428 8.340525821 7.607093948 146283740 czcC Metal Resistance "Cadmium,Cobalt,Zinc" Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 7.470939992 7.309735987 6.941623496 7.263646178 7.287026321 239929876 fnr Stress Oxygen stress Streptomyces ghanaensis ATCC 14672 8.662608564 8.41750043 8.183682287 8.600632355 8.643730307 8.116813677 8.243336879 8.22448874 7.934161763 117578333 ppx Phosphorus Phosphorus utilization Gramella forsetii KT0803 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Gramella;species:Gramella forsetii; 8.915172228 8.514241286 7.612935849 7.647957762 7.634224961 7.619133629 7.620842867 7.280609573 227069691 NiR Nitrogen Assimilatory N reduction uncultured archaeon 7.910811688 7.651287408 7.609155071 8.139606304 8.140910073 7.864632382 7.873835806 7.884925805 8.109705315 158251670 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 7.19974165 6.835378388 6.892615957 7.22990876 58259299 nagG Organic Remediation Aromatics Aromatic carboxylic acid Cryptococcus neoformans var. neoformans JEC21 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Tremellomycetes;order:Tremellales;family:Tremellaceae;genus:Filobasidiella;species:Filobasidiella neoformans; 8.088730859 7.699383976 7.517784836 7.723415443 7.680450943 7.235029049 7.456764874 7.530359632 167364479 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.201263727 7.392616775 7.912241569 7.417210905 7.367421818 7.968944416 7.564744926 7.785245775 8.20839423 220709168 xylA Carbon cycling Carbon degradation Hemicellulose Geobacillus sp. Y412MC61 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.374111108 7.26484749 7.102729108 7.043397864 6.931038665 7.731423739 7.146108253 7.158962282 7.037888487 182374631 mhqA Organic Remediation Aromatics Nitoaromatics Pseudomonas fluorescens 8.011560386 8.280319341 8.049637813 7.646284929 8.312956941 8.162795257 8.227809295 7.903714416 8.041153458 78222048 cytochrome Energy process Energy process Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 8.054099219 7.301106876 7.898572786 7.188275771 7.501122667 7.694968642 7.548304481 7.683035621 7.586635782 119450698 tfdA Organic Remediation Aromatics Chlorinated aromatics marine gamma proteobacterium HTCC2143 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.215993981 7.476538601 7.263743141 6.809940111 7.132120658 7.490962802 7.066150992 7.321701575 145565533 sigma_38 Stress Sigma factors Shewanella putrefaciens CN-32 7.094453304 6.848645705 6.933695194 6.617937717 7.056745 229205975 AceA Carbon cycling Carbon degradation others Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 8.220453222 8.305129048 8.22032669 7.980886113 8.454640183 8.304874161 8.521925756 8.283391285 8.31565944 159897336 hly virulence hemolysin Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 7.689425385 7.617652884 7.61350407 7.821353506 7.984901685 7.983420995 8.045847899 7.77762443 7.541692122 109240377 Van Antibiotic resistance other Enterococcus raffinosus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus; 7.640151008 7.698226833 7.747350378 7.777014822 7.586029851 7.832009005 7.922301622 7.634214677 7.215545618 215427176 linB Organic Remediation Pesticides related compound Mycobacterium tuberculosis T92 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 7.270076244 7.256837877 7.100499422 6.878054476 6.603783861 7.488805626 87281058 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.673263659 7.454903286 7.525345027 7.28916988 7.648762347 7.803238993 7.850968396 7.565119899 7.56025713 83572589 fnr Stress Oxygen stress Moorella thermoacetica ATCC 39073 7.40421134 7.74033279 7.437656698 7.833556113 7.878334449 7.866979205 7.806640356 7.742389106 227479419 SMR_antibiotics Antibiotic resistance transporter Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 7.949931829 8.014757834 7.904382182 8.175510819 8.207867742 8.292230458 7.916134811 7.753267307 110623038 arsB Metal Resistance Arsenic Arthrobacter sp. A03 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.647828119 7.77715204 7.422943099 7.241386536 7.761953175 7.861193919 7.727782947 7.543549248 7.530616318 56798549 catechol_B Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 8.00185877 7.849229322 7.798969767 7.470774041 8.121294173 7.570927328 8.008441837 8.164691259 7.872954512 27657371 nhh Organic Remediation Aromatics Nitoaromatics uncultured bacterium Dr1 7.611833095 7.631151088 7.741227059 7.589516338 7.568702267 7.428951176 7.498275765 7.428193342 192290196 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.562509213 7.584925475 7.76243523 7.345166269 8.071781184 8.095867181 7.8384246 7.666454122 7.407301756 126629957 Catechol Organic Remediation Aromatics Other aromatics Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 7.151145376 7.363309479 7.227630124 6.956141639 162072783 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.33111966 7.253577509 7.509157033 109699981 amyA Carbon cycling Carbon degradation Starch Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 7.474893509 7.224849474 115376492 xylA Carbon cycling Carbon degradation Hemicellulose Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 7.681757792 7.558264223 7.644875771 7.70661998 7.605147333 7.826168602 7.690184422 238620110 pstB Stress Phosphate limitation Sulfolobus islandicus M.16.4 7.810762619 7.383895295 108764871 grpE Stress Heat shock Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 7.564828359 7.514238889 7.564281207 7.276940196 7.179171526 7.470191647 7.367848994 7.39367173 163748810 cytochrome Energy process Energy process Shewanella benthica KT99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella benthica; 7.320171194 7.196509073 7.024947433 86606206 fnr Stress Oxygen stress Synechococcus sp. JA-3-3Ab 7.791344023 7.798453527 7.511248488 7.741010953 8.082021491 76802127 CopA Metal Resistance Copper Natronomonas pharaonis DSM 2160 7.172733699 7.396149794 7.705590129 6.800725852 7.004833008 7.426427015 7.201160535 7.010751071 116501736 ChrA Metal Resistance Chromium Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 7.439722764 7.40606062 7.528357092 7.258826992 7.256879781 52550195 mcrA Carbon cycling Methane Methane production uncultured archaeon GZfos35D7 superkingdom:Archaea; 7.53217108 7.346200329 7.399341687 7.188098382 7.299366685 7.582011043 7.109199216 7.465148008 254821861 AceA Carbon cycling Carbon degradation others Mycobacterium intracellulare ATCC 13950 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 7.960261205 8.20199288 7.688005162 7.648534853 8.208766552 8.112478538 8.079892352 7.86126806 8.076417495 40739316 tfdA Organic Remediation Aromatics Chlorinated aromatics Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.901415631 7.665163546 7.753999381 7.813188825 8.1347319 8.124581168 8.042965184 7.680279927 7.979010049 218382 AceA Carbon cycling Carbon degradation others Candida tropicalis superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;genus:Candida; 7.268410053 7.220917497 7.14541964 116626521 dnaK Stress Heat shock Solibacter usitatus Ellin6076 7.662956745 7.583803623 7.755327184 7.505284618 7.619817555 8.163206553 7.646058762 7.819214276 7.599963035 46202126 ZntA Metal Resistance Zinc Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 7.480428425 7.469526643 7.475714288 7.518769727 7.543083699 7.706124654 197296820 B_lactamase_A Antibiotic resistance Beta-lactamases uncultured bacterium BLR1 superkingdom:Bacteria; 8.010005546 8.178936441 7.888145655 7.42847641 7.991709287 8.011483773 7.752304934 7.47639451 7.905650032 48926964 narG Nitrogen Denitrification Halomonas maura superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 7.822752129 7.829816878 8.114235731 7.503038851 7.906210376 7.988513895 7.811017005 7.788165568 7.461878631 78221801 cytochrome Energy process Energy process Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 7.948877535 7.734669408 7.329130632 7.719114614 7.701266075 7.952355306 7.582073506 7.67394441 7.693473942 220719457 CopA Metal Resistance Copper Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 8.713204928 8.43266203 8.049549381 7.667634808 8.529702175 8.228150351 8.16496713 8.051622338 8.508581497 254447222 ahpC Stress Oxygen stress gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 6.965145573 6.992509574 6.986644145 6.593065919 7.226527102 18558986 nirS Nitrogen Denitrification uncultured temperate forest soil bacterium superkingdom:Bacteria; 7.799425903 7.561903051 7.232103196 7.592706347 7.315633142 7.721323138 7.553621099 7.708730415 7.530009246 239801397 ahpF Stress Oxygen stress Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 7.604846626 7.640517399 7.601513532 7.309383262 7.704810096 7.706571589 7.742999271 7.711573283 32967110 xylG Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas sp. KL28 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.380079818 7.390582439 7.200246364 121608269 pstB Stress Phosphate limitation Verminephrobacter eiseniae EF01-2 7.726088576 7.459234436 7.511518485 7.086894817 7.509047476 7.803250024 7.53563531 7.468734879 7.325254713 118029372 catB Organic Remediation Aromatics BTEX and related aromatics Burkholderia phymatum STM815 7.921933981 7.961592748 7.850891198 7.953456938 7.959497847 8.277906504 8.21196978 7.89233682 42522385 cap virulence capsule Bdellovibrio bacteriovorus HD100 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 7.817446965 7.286203239 7.834950378 7.351799035 7.716558672 7.891588314 160886127 pcc Carbon cycling Carbon fixation Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 7.220823678 6.838628895 7.240838583 219676485 rd Organic Remediation Chlorinated solvents gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.290631013 7.062142398 7.158731382 57020642 nrfA Nitrogen Dissimilatory N reduction Campylobacter coli RM2228 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter coli; 7.354131935 7.222210082 7.071867646 7.195374722 7.258400138 4982169 sigma_24 Stress Sigma factors Thermotoga maritima MSB8 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga;species:Thermotoga maritima; 7.209546572 7.161550773 6.94300103 6.803826782 7.537503904 258539151 pstB Stress Phosphate limitation Lactobacillus rhamnosus Lc 705 7.446681116 7.059972047 146406431 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.740352402 7.631844654 7.4500719 7.606159186 7.926193815 8.147676384 7.654433887 7.749646528 7.966485189 70731666 atzA Organic Remediation Herbicides related compound Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.538379618 7.605414052 7.423944099 7.370135944 7.628582626 7.777963929 7.797469276 7.592644644 7.512983021 150014764 rubisco Carbon cycling Carbon fixation uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 8.582103876 8.613666772 8.505528314 8.72089252 8.487980214 8.387657837 8.437298997 8.18718226 88792271 atzA Organic Remediation Herbicides related compound Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 7.293376713 7.223250987 6.845522706 7.086130338 68135555 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.168316253 6.746315042 7.034942097 121594457 chnB Organic Remediation Other Hydrocarbons Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 8.413637204 8.012724686 7.664305308 8.293613294 8.278208325 8.612040395 7.9865326 8.226428143 7.769719471 109948008 sigma_70 Stress Sigma factors Helicobacter acinonychis str. Sheeba 7.717001002 7.660894457 7.598434406 119483190 pheA Organic Remediation Aromatics Other aromatics Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 7.332477203 7.248959726 6.61212451 7.560608402 126134231 nagI Organic Remediation Aromatics Aromatic carboxylic acid Pichia stipitis CBS 6054 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Scheffersomyces;species:Scheffersomyces stipitis; 7.400162926 6.835330385 7.341895378 7.28540311 7.559782965 82741594 TerC Metal Resistance Tellurium Shewanella sp. W3-18-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 7.474487109 7.344148086 157285634 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 8.0274104 7.953047272 7.938076939 8.159329079 8.510917281 8.208228926 8.617888794 8.383021498 8.51598979 90107544 fnr Stress Oxygen stress Rhodopseudomonas palustris BisB18 7.732352162 7.276459433 7.658315804 7.09645955 7.545562794 7.752832173 7.823582959 7.58258976 241775326 pstC Stress Phosphate limitation Allochromatium vinosum DSM 180 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 7.382466201 7.241795639 189346291 dnaK Stress Heat shock Chlorobium limicola DSM 245 7.55977044 7.698336213 7.407030231 7.360810784 7.907155241 7.985148912 7.678733218 7.487796865 7.659502532 214036661 hrcA Stress Heat shock marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.358850986 7.133986588 182635394 nmoA Organic Remediation Aromatics Nitoaromatics Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 7.383687413 7.37986964 7.260736564 6.988549565 7.507785782 156061755 chnB Organic Remediation Other Hydrocarbons Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 7.380361111 7.155992932 6.745262654 7.39861731 116066942 fnr Stress Oxygen stress Synechococcus sp. RS9916 7.073093201 7.366380622 7.454267051 7.356830301 6.943120019 7.065150531 7.520484625 168334532 dsrA Sulphur sulfite reductase Epulopiscium sp. 'N.t. morphotype B' superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Epulopiscium; 7.201403443 7.095535374 225200759 ahpC Stress Oxygen stress Proteus penneri ATCC 35198 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus penneri; 7.286534361 6.886982045 253702577 hly virulence hemolysin Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.00876206 7.804386295 7.700865137 7.732694639 7.399967915 8.153043965 7.472896807 7.633848704 7.85661282 117994280 ChrA Metal Resistance Chromium Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 6.982883069 7.011199422 34732995 ssb Bacteria phage REPLICATION Bacteriophage 44RR2.8t order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.183511736 7.250835589 260907350 fnr Stress Oxygen stress Brevibacterium linens BL2 7.682393261 7.845157543 7.793160157 7.708872065 7.736294367 8.230410249 7.896276233 7.988971819 7.728458478 116075975 pulA Carbon cycling Carbon degradation Starch Streptococcus pneumoniae D39 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus pneumoniae; 7.404503675 7.342603706 7.502381697 7.08075306 7.481361482 165880043 exoglucanase Carbon cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.800669549 7.433751447 7.455773072 7.092285768 7.038489017 7.644529773 7.297980578 6.964803564 92392515 gyrB other category gyrB Psychrobacter cryohalolentis K5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter cryohalolentis; 7.546384151 7.357921067 7.125423928 7.186220352 7.386652572 7.852750272 7.467274922 7.339018748 60475964 rubisco Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.526027535 7.354208011 8.024528303 8.233297039 7.612555219 8.203569882 7.51785102 7.317790625 7.828195315 26278702 narG Nitrogen Denitrification uncultured bacterium 7.565477365 7.105241273 7.17248266 7.476964233 7.207772407 7.080201746 6.953878562 23347296 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Brucella suis 1330 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Brucella;species:Brucella suis; 8.253533529 8.560615157 7.986247811 8.23987337 8.127457606 7.99259951 8.033169811 118619999 pcc Carbon cycling Carbon fixation Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 8.22473896 7.890898718 8.003867378 8.022367755 7.974105559 8.083807256 7.538473729 7.979640817 89901854 aoxB Metal Resistance Arsenic Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 7.977466827 7.758021075 124258033 pilin virulence pilin Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 7.239291339 7.552592725 7.377070979 7.278886103 7.301747173 160900349 pstC Stress Phosphate limitation Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.627543051 7.534348005 7.326360796 7.429704257 7.354184567 7.639964552 7.455408113 117989544 nhh Organic Remediation Aromatics Nitoaromatics Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8.128130864 8.037458125 7.999160644 7.437353631 8.171585349 7.698720909 7.96675977 8.228432111 7.823428112 156108340 ChrA Metal Resistance Chromium Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 7.474263778 7.591598201 7.266831967 7.199408914 68189832 CODH Carbon cycling Carbon fixation Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 7.292177551 7.172214595 7.021786761 6.986026875 6.628301311 7.557338329 6.972064079 6.916135237 7.317659139 148556614 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.350023371 8.590872118 7.731473783 7.918746259 8.227276152 7.893763609 7.912051195 8.116734521 222084914 glnA Stress Nitrogen limitation Agrobacterium radiobacter K84 7.719208297 7.696226214 7.428930735 7.101077568 7.418840219 7.743963796 7.322863209 7.086232729 7.441778829 284008589 sigma_70 Stress Sigma factors Arsenophonus nasoniae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Arsenophonus; 7.123805592 7.399032211 7.023263643 7.455656126 7.576385997 7.187535319 7.636141662 208010647 iuc virulence aerobactin Aliivibrio salmonicida LFI1238 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Aliivibrio salmonicida; 7.510057883 7.532363657 7.538810376 6.842641698 7.348525607 7.477868041 7.127384025 7.54422067 118017748 dmsA Organic Remediation Others Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 7.191088906 7.344785742 7.15893542 7.031435723 7.105108958 7.078397276 7.12096423 46520031 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.239812979 8.333923804 8.028517918 7.606581291 7.661349954 49532328 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Acinetobacter sp. ADP1 7.4937185 7.505563841 7.434571271 7.39539058 7.392724501 7.30849022 7.766146052 170727506 pstB Stress Phosphate limitation Shewanella woodyi ATCC 51908 7.00232922 7.174072952 256741527 fnr Stress Oxygen stress Thiomonas intermedia K12 7.229639742 7.29291184 7.216305476 120593998 pimF Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 7.994756313 7.754043309 7.892326002 7.864937067 8.089238718 7.989548815 8.046117668 7.790695006 7.93867908 39648626 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.293643934 7.41703914 7.558442288 7.383917749 7.626374969 7.678367348 7.804064354 7.655020208 7.385849284 134094835 CopA Metal Resistance Copper Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 7.084639588 6.972804623 7.168601275 46389791 mcrA Carbon cycling Methane Methane production uncultured archaeon superkingdom:Archaea; 7.590361069 7.593492569 7.488786625 7.506453989 7.104260821 7.893164398 7.422677356 7.244021613 154086784 ara Carbon cycling Carbon degradation Hemicellulose Parabacteroides merdae ATCC 43184 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides merdae; 7.213656263 7.317897798 7.342324401 7.216544104 6.981364747 7.621393518 187426377 CadA Metal Resistance Cadmium Akkermansia muciniphila ATCC BAA-835 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Akkermansia;species:Akkermansia muciniphila; 7.783419626 7.581950948 7.311188662 7.266767568 238939303 katE Stress Oxygen stress Zygosaccharomyces rouxii superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Zygosaccharomyces; 7.494709431 7.361239328 286035 ppk Phosphorus Phosphorus utilization Klebsiella aerogenes superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella; 7.664218698 8.012417414 7.706340386 7.75477511 7.570336024 7.816526157 7.25048716 7.03472827 50842592 amyA Carbon cycling Carbon degradation Starch Propionibacterium acnes KPA171202 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 7.742366787 7.56651923 7.923463773 7.390409291 7.852764741 7.834358707 7.647737117 7.826628389 7.687941678 83835896 glnA Stress Nitrogen limitation Roseovarius nubinhibens ISM 7.384114144 7.506154654 7.063332335 7.281022107 7.451308445 254473921 fnr Stress Oxygen stress Pseudovibrio sp. JE062 7.240344698 7.336995836 7.626563931 7.52952014 7.334354947 7.499545655 7.424292153 7.425481808 7.322276922 146424871 exoglucanase Carbon cycling Carbon degradation Cellulose Pleurotus sp. 'Florida' superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pleurotaceae;genus:Pleurotus;species:Pleurotus pulmonarius; 7.86864377 7.809360621 7.745301293 7.694374436 7.911606058 7.864050011 7.723033332 7.302080578 7.56913677 119538378 pcc Carbon cycling Carbon fixation Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 7.189459443 7.010254257 7.095808297 124893678 linB Organic Remediation Pesticides related compound Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 7.382629123 7.199992743 7.405417639 78357899 cytochrome Energy process Energy process Desulfovibrio desulfuricans G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 8.408480923 8.280436578 8.335879638 8.082617704 8.798265635 7.779016286 8.488995361 8.668468073 8.330776709 15156662 nagG Organic Remediation Aromatics Aromatic carboxylic acid Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.688913471 7.723837112 7.474230797 7.394569431 7.569645317 7.834763079 7.638895915 7.716435299 115285971 phtA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia ambifaria AMMD superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 7.940060885 7.705930215 7.543036532 7.571751586 7.801869291 7.917575311 8.075184002 7.806649413 7.962366993 188021865 katE Stress Oxygen stress Providencia stuartii ATCC 25827 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia stuartii; 7.413413859 7.008897587 6.755241896 7.50626544 118733324 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.32048087 8.271364514 8.167022168 7.74513159 8.177252784 7.951655675 8.030519217 7.561540555 148258405 atzC Organic Remediation Herbicides related compound Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.534990433 7.690754761 6.604391624 7.210312506 206567762 MFS_antibiotic Antibiotic resistance transporter Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 8.52673866 8.129037604 8.005299447 8.324593843 8.471822373 7.507895511 8.515203351 8.154173301 8.23692552 99083145 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.153512401 7.086525975 112463027 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.297436378 7.108789803 7.180087477 7.184578807 212994437 amyA Carbon cycling Carbon degradation Starch Thermotogales bacterium TBF 19.5.1 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Kosmotoga;species:Kosmotoga olearia; 8.047022843 7.789032069 7.769431913 7.826148424 8.27042176 8.127189424 8.25051822 8.126590076 8.2466466 261280726 fnr Stress Oxygen stress Geobacillus sp. Y412MC10 7.68679314 8.033355769 7.621921632 7.186965149 7.5272113 256760489 glnA Stress Nitrogen limitation Thiomonas intermedia K12 8.392412029 8.306438167 8.242517994 7.955923113 8.55615444 8.277098765 8.237617512 8.297932596 8.116854884 187734966 sigma_24 Stress Sigma factors Akkermansia muciniphila ATCC BAA-835 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Akkermansia;species:Akkermansia muciniphila; 8.055708055 7.806976314 7.847947019 7.481397383 7.632907345 7.378962127 7.611575471 152990106 SmtA Metal Resistance Miscellaneous Nitratiruptor sp. SB155-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;genus:Nitratiruptor; 7.988547615 7.953599608 7.591544586 7.753725392 7.603885203 7.701383799 7.682473807 7.611867151 7.480210942 154244882 proO Organic Remediation Aromatics Other aromatics Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 7.394728665 7.290333775 7.321063554 7.657506602 7.339766714 7.031866516 220711393 ArsC Metal Resistance Arsenic Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.079864685 7.824410892 7.955532322 7.660596371 7.88074606 8.074261215 7.779753185 7.826592875 7.657274129 6939649 gyrB other category gyrB Chryseobacterium meningosepticum superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Elizabethkingia; 7.552941783 7.318719762 7.68535099 7.203205629 7.544910277 7.178842651 7.538042402 37520726 fnr Stress Oxygen stress Gloeobacter violaceus PCC 7421 7.393230792 7.478547641 7.469327889 6.732969731 7.49254575 7.167245438 7.208404178 7.04009775 157144974 MFS_antibiotic Antibiotic resistance transporter Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 7.298450958 7.108761824 67915647 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Chlorobium phaeobacteroides BS1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 7.198035274 6.895578162 7.066506431 6.767496963 7.228288567 33151508 obgE Stress Radiation stress Haemophilus ducreyi 35000HP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus ducreyi; 6.911501081 7.193470116 87311875 oxyR Stress Oxygen stress Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 7.100862582 7.338994147 7.057204855 83953551 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 7.871250471 7.820761265 7.981933555 8.280403587 7.83149533 8.49874899 7.949236532 8.059263865 7.778002856 254485793 pstC Stress Phosphate limitation Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.10694437 7.273246241 7.587772954 7.101338015 6.928157447 7.708337209 6.942712286 7.230617378 7.181052074 152997053 catB Organic Remediation Aromatics BTEX and related aromatics Marinomonas sp. MWYL1 7.460670363 7.509911239 7.457665223 7.239080971 7.868538538 7.810275007 7.690599639 7.863178674 7.641427955 247536888 pilin virulence pilin Dickeya zeae Ech1591 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 7.982125669 8.235485982 8.263701602 7.910795716 8.466893295 8.366226755 7.804273554 8.11962661 223935217 B_lactamase_C Antibiotic resistance Beta-lactamases bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 7.224350876 7.268409046 7.402508687 7.605718883 7.201480096 7.661974578 7.068199667 6.94770639 7.35351595 220923838 hdnO Organic Remediation Aromatics Heterocyclic aromatics Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 7.856470189 7.664770037 7.586404043 7.629671192 7.517519941 118424430 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.48363354 7.494638374 7.424544942 6.730794724 7.298018698 7.625072087 7.061918482 7.241211625 7.238352218 119177882 glx Carbon cycling Carbon degradation Lignin Coccidioides immitis RS superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides immitis; 7.168237584 7.309728856 7.339904677 7.015473152 7.473563338 7.222549059 7.173022343 7160891 nirS Nitrogen Denitrification uncultured bacterium wC1 superkingdom:Bacteria; 8.040321199 8.192234392 7.317961524 7.162445467 7.565102491 7.725022547 7.699162325 7.193046182 7.502474744 109452542 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.420776546 7.545412701 7.656837116 7.714546655 7.696419659 7.750102074 7.606047371 7.713593286 7.554052902 10175174 sigma_32 Stress Sigma factors Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 7.716613738 7.883815322 7.741540618 7.133562455 7.561487687 7.607174842 8.294814287 7.613659385 7.700171007 118169195 CadA Metal Resistance Cadmium Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 7.988087683 8.036327702 7.858805118 7.830660326 8.101026496 8.184112846 8.059746649 7.814181641 7.906627432 32471864 sigma_24 Stress Sigma factors Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 8.179056385 8.273543158 8.316584414 7.740480941 8.29358976 7.838751343 7.851691812 8.412835699 7.597113615 209498041 silC Metal Resistance Silver Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.137669635 7.30180962 7.654062865 7.729432041 7.127817981 121700454 nitA Organic Remediation Aromatics Other aromatics Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7.840135978 8.1154421 7.972377058 8.011486925 7.951739744 8.099277813 8.209939494 8.014501993 8.04459892 73749271 PceA Organic Remediation Others Dehalococcoides sp. CBDB1 7.454227369 7.398393417 7.195581386 7.162389473 7.622193786 7.575450974 7.445482231 7.088686972 7.449053084 40742004 mhpA Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.331944341 6.93182404 6.992092819 6.80171542 7.282612619 118424451 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.790747249 7.578321564 7.358010314 7.141006612 7.188159657 7.419469063 7.317436138 7.211877214 84392444 CadA Metal Resistance Cadmium Oceanicola batsensis HTCC2597 7.72683026 7.703781637 7.857970818 7.945925696 7.537306285 7.352391213 7.561824249 50541845 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.281136646 7.474247577 7.05558482 6.951372046 7.635116013 82745724 endochitinase Carbon cycling Carbon degradation Chitin Clostridium beijerincki NCIMB 8052 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium beijerinckii; 7.162409642 7.010108662 7.208734964 7.012462742 7.655068823 270044646 ABC_antibiotic_transporter Antibiotic resistance transporter Serratia odorifera 4Rx13 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia odorifera; 8.02528482 8.386553838 7.678536228 7.62400612 7.768142599 8.019701018 7.898605615 7.766061162 7.698113696 110168085 pstC Stress Phosphate limitation Trichodesmium erythraeum IMS101 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Trichodesmium;species:Trichodesmium erythraeum; 7.422873751 7.381363291 7.132437818 7.058827828 7.074196319 7.357662491 7.579344199 7.001504125 146404633 glnA Stress Nitrogen limitation Bradyrhizobium sp. BTAi1 7.925886419 7.810313257 7.868374407 7.859199186 8.043125644 7.989836341 7.89502071 7.924393262 7.705435657 186476417 SMR_antibiotics Antibiotic resistance transporter Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.834923409 7.915308679 7.503008818 7.799066987 7.775263542 7.84675645 7.622687008 7.699096933 158334373 nhh Organic Remediation Aromatics Nitoaromatics Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;genus:Acaryochloris;species:Acaryochloris marina; 7.295669376 7.588606056 7.825776999 7.942350655 7.397187422 8.091812575 7.554626125 7.267876332 7.539656489 146312620 ArsC Metal Resistance Arsenic Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 7.395835924 7.417811962 7.031437951 76577390 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.094021056 8.086840332 8.090463333 7.900183073 7.953767599 7.847968739 7.298261099 260157205 glnR Stress Nitrogen limitation Granulicatella elegans ATCC 700633 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Carnobacteriaceae;genus:Granulicatella;species:Granulicatella elegans; 7.168316128 7.384237434 71010212 ChrA Metal Resistance Chromium Ustilago maydis 521 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Ustilaginomycetes;order:Ustilaginales;family:Ustilaginaceae;genus:Ustilago;species:Ustilago maydis; 7.378911318 7.308852493 7.318214074 29366784 helicase_P4alpha_type Bacteria phage REPLICATION Streptomyces phage phiBT1 order:Caudovirales;family:Siphoviridae;genus:PhiC31-like viruses; 7.76903043 7.902522011 7.770496748 7.391679208 7.372415136 7.281268337 7.338507724 7.556060431 159893233 sigma_24 Stress Sigma factors Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 7.651774259 7.911526667 8.050777342 88865490 sigma_38 Stress Sigma factors Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 7.472759731 7.63857686 7.329650368 7.583129937 7.591432222 7.708092419 7.560650801 7.583784763 114308827 pilin virulence pilin Nitrosomonas eutropha C91 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas eutropha; 7.494592254 7.779918874 7.596361268 7.647397591 7.194121285 7.493827927 7.396053451 7.869586393 71847860 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 7.562694892 7.601209995 7.338404645 7.360489263 7.195596615 7.640007221 269791487 pstA Stress Phosphate limitation Thermobaculum terrenum ATCC BAA-798 7.584256631 7.4913761 7.005075889 6.876257376 6.986292125 7.208093272 6.943818101 7.118790054 63029781 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.55551666 7.249602381 7.244401315 6.89364784 7.526930394 7.033170309 6.873683015 242263243 mannanase Carbon cycling Carbon degradation Hemicellulose Clostridium cellulovorans 743B superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium cellulovorans; 6.977225014 7.138337489 6.908808505 6.809521769 7.265099604 260912311 norB Nitrogen Denitrification Prevotella sp. oral taxon 472 str. F0295 7.211849047 7.236851615 6.833142162 170657681 fnr Stress Oxygen stress Methylobacterium radiotolerans JCM 2831 7.76808618 7.648155782 170728056 sigma_24 Stress Sigma factors Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 7.359390477 7.078697497 7.22668414 6.580477131 7.419681155 163754947 pcc Carbon cycling Carbon fixation Kordia algicida OT-1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Kordia;species:Kordia algicida; 8.908794014 9.13629912 9.242743413 9.430641322 9.349970841 9.19479655 9.319272975 188996340 fnr Stress Oxygen stress Sulfurihydrogenibium sp. YO3AOP1 7.163567676 7.364797793 7.316332924 134053339 glnA Stress Nitrogen limitation Desulfotomaculum reducens MI-1 7.334376184 7.154840016 7.066556289 7.097403183 7.446023883 7.088342731 7.36562716 7.028514404 282581413 obgE Stress Radiation stress Veillonella parvula ATCC 17745 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Veillonella;species:Veillonella parvula; 7.231959269 7.299350837 88783132 sigma_70 Stress Sigma factors Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 7.838941253 8.09783913 8.193389389 7.589779351 8.328327755 8.121168014 8.081665665 8.059320147 8.115656258 15894564 dnaK Stress Heat shock Clostridium acetobutylicum ATCC 824 7.467309229 7.333600923 7.137666104 6.691318632 6.932464391 7.706240172 119513368 ChrA Metal Resistance Chromium Nodularia spumigena CCY9414 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nodularia;species:Nodularia spumigena; 7.949781466 7.752580715 7.759499139 7.270137308 8.059506295 7.514206978 7.949205689 7.629635761 7.96607613 114805452 CopA Metal Resistance Copper Thermoanaerobacter ethanolicus X514 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Thermoanaerobacter; 7.367093442 7.267907189 6.947029483 7.582758494 6.925304031 6.820670437 6.892528269 87135595 pimF Organic Remediation Aromatics Aromatic carboxylic acid Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 7.756220201 7.061235565 7.403358333 7.52984013 7.322664337 7.634127836 7.281661894 7.164090105 7.028325147 261282352 fnr Stress Oxygen stress Geobacillus sp. Y412MC10 7.495199142 7.341879247 210611730 cda Carbon cycling Carbon degradation Starch Clostridium nexile DSM 1787 7.169470651 7.202759458 7.264268463 6.729478898 7.300147063 83652114 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia thailandensis E264 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 7.886811344 7.798922773 7.745148446 7.704098127 7.619255307 7.943679774 7.706141287 7.892672337 7.323769192 149202502 ChrA Metal Resistance Chromium Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.56872178 7.529037092 7.965848105 7.813864176 7.536297882 7.660188201 7.63789387 7.792068068 39935395 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.334326979 8.682753531 8.222839459 7.995949259 8.59482447 8.275839904 8.049908766 8.283694259 83725787 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia solanacearum UW551 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 6.760884042 7.495816183 260775591 pilin virulence pilin Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 7.098940749 7.144153585 7.199932232 7.237731407 7.567762231 6.948882979 6.999526665 77379184 mer Metal Resistance Mercury uncultured bacterium superkingdom:Bacteria; 7.470423733 7.651883142 7.600811262 7.455585491 7.369839005 7.540234945 7.848537823 8.161290884 1839393 exochitinase Carbon cycling Carbon degradation Chitin Trichoderma harzianum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 6.618504284 7.09799603 70673003 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.351709886 7.318151249 7.249714709 7.074240041 7.314512912 7.183887415 7.017390683 134268331 catB Organic Remediation Aromatics BTEX and related aromatics Geobacillus thermodenitrificans NG80-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermodenitrificans; 7.395847908 7.16420977 7.504149111 7.195196273 6.987305991 7.837352835 7.155907687 7.021036785 115511400 Xamo Organic Remediation Other Hydrocarbons Pseudonocardia sp. TY-7 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia; 7.661229907 7.594778599 7.443006418 7.234043363 7.221251828 94421968 chnB Organic Remediation Other Hydrocarbons Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 7.309372581 7.418488751 7.237022335 6.878612445 7.271365946 7.470729444 196257138 sigma_70 Stress Sigma factors Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.232516179 7.14832215 70728911 sigma_24 Stress Sigma factors Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.49204815 7.904951235 7.764978383 7.193080372 7.775304215 7.386645279 7.282737773 7.696003187 116696798 pstC Stress Phosphate limitation Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 7.137376104 6.959253904 6.933117709 260612547 pstA Stress Phosphate limitation Vibrio metschnikovii CIP 69.14 7.205756572 7.127807946 7.232836445 218887474 cytochrome Energy process Energy process Desulfovibrio vulgaris str. 'Miyazaki F' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 7.815046721 7.713309221 8.075247577 7.574008408 7.960979243 8.221018872 7.646690629 7.796242842 7.693005039 89084687 TerD Metal Resistance Tellurium Bacillus sp. NRRL B-14911 7.630870277 7.342820969 7.387921214 78172074 sox Sulphur Sulphur oxidation Chlorobium chlorochromatii CaD3 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium chlorochromatii; 7.296154397 7.057853657 169187367 gyrB other category gyrB Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.282408436 7.056580285 7.036506126 7.498511063 7.400352663 6.943281337 7.737520181 119768015 AceB Carbon cycling Carbon degradation others Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 7.584670979 7.306488311 6.912956922 6.890935641 7.576668606 196224034 phoB Stress Phosphate limitation Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 7.684707102 7.585365862 7.18461947 7.169033862 7.306732956 7.261374926 33600075 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bordetella bronchiseptica RB50 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella bronchiseptica; 7.287788173 7.492802741 7.797632834 8.161842017 7.49914165 8.013948746 7.259606674 7.563059344 7.69570701 254477021 phoB Stress Phosphate limitation Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8.080195327 7.868279583 8.199832586 7.617697547 7.69865461 7.482494029 7.445893606 166078307 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.794511166 8.000271836 7.767724975 7.115091307 7.986902758 7.739026377 7.874769425 8.00294664 7.908294537 227845881 grpE Stress Heat shock Halogeometricum borinquense DSM 11551 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halogeometricum;species:Halogeometricum borinquense; 7.557284875 7.359257656 7.302816869 7.485715946 7.535318562 7.311764825 7.341720993 7.653104416 253781309 ureC Nitrogen Ammonification Photorhabdus asymbiotica superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus; 7.056312499 6.86021226 7.213389326 6.945056604 7.359775467 149239901 nmoA Organic Remediation Aromatics Nitoaromatics Lodderomyces elongisporus NRRL YB-4239 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Lodderomyces;species:Lodderomyces elongisporus; 7.535386819 7.109672655 7.206965015 7.354407739 7.331589307 240172596 AceA Carbon cycling Carbon degradation others Mycobacterium kansasii ATCC 12478 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 7.918168307 7.681645123 7.427627824 7.163585859 7.701050764 7.907509845 7.741225063 7.638218171 7.752161208 169657238 nirS Nitrogen Denitrification Paracoccus sp. 62 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 7.130802217 7.16310541 6.874233658 7.016991231 6.981644334 7.273678277 194335297 silC Metal Resistance Silver Pelodictyon phaeoclathratiforme BU-1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 7.600406184 7.598425358 7.779306474 7.925244314 8.020728081 8.144115595 7.671453876 7.766432141 283836563 type_III_secretion virulence secretion Citrobacter youngae ATCC 29220 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter youngae; 7.001408292 6.916654089 260552116 ahpC Stress Oxygen stress Lactobacillus fermentum 28-3-CHN superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus fermentum; 6.929080601 7.127840527 88699159 BchY other category chlorophyllide reductase Congregibacter litoralis KT71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 7.114165858 6.865751671 6.871924736 189422543 cap virulence capsule Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 6.74290083 7.063166515 6.969333398 7.148180998 74038404 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.358791091 7.689712421 7.955968635 7.267777472 7.845207046 7.650889458 7.870963207 7.57470311 111282687 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 7.223109464 7.076093564 7.405327597 7.121763152 7.009334887 7.051771043 196158329 sigma_70 Stress Sigma factors Alteromonas macleodii 'Deep ecotype' 7.344226818 7.188104199 7.470516286 6.93278403 7.598082344 7.187277548 7.291395119 89331681 gyrB other category gyrB Chlamydophila felis Fe/C-56 superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Chlamydiaceae;genus:Chlamydophila;species:Chlamydophila felis; 7.171928374 7.244796237 7.119258176 6.735805185 6.744234515 7.485592845 7.028133861 7.013477678 238762692 ureC Nitrogen Ammonification Yersinia kristensenii ATCC 33638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia kristensenii; 7.339087103 7.347345257 7.26625529 6.996531299 7.07693772 7.022917202 46122855 nitA Organic Remediation Aromatics Other aromatics Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 7.161224109 7.194593935 7.334016641 163802977 sigma_38 Stress Sigma factors Vibrio sp. AND4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.474429281 7.673762013 7.258818981 71554353 iro virulence Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 7.743319923 7.053971173 7.081927009 7.057460119 225168354 nrfA Nitrogen Dissimilatory N reduction Dethiobacter alkaliphilus AHT 1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Syntrophomonadaceae;genus:Dethiobacter;species:Dethiobacter alkaliphilus; 7.157773451 7.164851548 7.067837243 6.939937563 7.620819759 4586283 phdJ Organic Remediation Aromatics Polycyclic aromatics Alcaligenes faecalis 7.671732476 7.630457468 7.653210901 7.854533205 77959611 xylA Carbon cycling Carbon degradation Hemicellulose Yersinia bercovieri ATCC 43970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 7.848362986 7.976528231 7.813353007 7.049670528 7.691862766 7.272227683 7.651459325 7.639254692 7.777937601 108768765 catB Organic Remediation Aromatics BTEX and related aromatics Mycobacterium sp. MCS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.729323348 7.943771499 7.612787484 7.866880484 7.86983416 7.949135608 7.821537097 7.671165658 222879209 glnA Stress Nitrogen limitation Campylobacter rectus RM3267 7.57734481 7.553814777 7.669161353 7.172897962 7.707805228 7.916123484 7.624672122 7.556974163 7.631504758 15623454 glycosyl_transferase_EPS Bioleaching EPS Sulfolobus tokodaii str. 7 7.306778393 7.291777994 7.107363058 254487715 hrcA Stress Heat shock Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.180305131 7.146942815 7.103014389 6.879411761 6.743398007 7.661674246 7.119856728 7.268013879 18147175 gyrB other category gyrB Alcanivorax sp. 12W-23 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 7.709168152 7.732786671 7.580588039 7.732251277 7.503904622 7.651899282 7.549841644 7.894582003 7.467703806 255061151 amyA Carbon cycling Carbon degradation Starch Geobacter sp. M18 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 7.124930809 7.42185119 7.528245281 7.289398037 7.200643737 7.436933891 7.506497737 7.559951835 194100483 primase Bacteria phage REPLICATION Yersinia phage Yepe2 7.3244268 7.429955659 7.242856971 7.167340612 7.219239132 77919031 sigma_32 Stress Sigma factors Pelobacter carbinolicus DSM 2380 7.047167104 7.028102109 7.058963726 7.105725386 6.917910078 7.327180682 62484841 pimF Organic Remediation Aromatics Aromatic carboxylic acid uncultured bacterium superkingdom:Bacteria; 6.923522205 7.359354962 227314171 AceB Carbon cycling Carbon degradation others Desulfohalobium retbaense DSM 5692 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium;species:Desulfohalobium retbaense; 7.311193032 7.5580672 7.015628789 7.245848245 7.351403021 238933028 AceA Carbon cycling Carbon degradation others Lachancea thermotolerans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Lachancea; 7.262853024 7.124026253 7.146624806 7.122651915 7.098463812 7.410308856 46103822 cadBD Metal Resistance Cadmium Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 7.170422754 7.041573354 33456984 oxdB Organic Remediation Aromatics Nitoaromatics Pseudomonas chlororaphis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas chlororaphis; 7.25586872 7.423336697 7.164119573 7.726624017 118151883 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium superkingdom:Bacteria; 6.938291179 7.403505068 227240275 grpE Stress Heat shock Sphingobacterium spiritivorum ATCC 33300 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium;species:Sphingobacterium spiritivorum; 6.97804539 7.01169416 113733315 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 7.643623892 7.704854591 8.094515587 7.33114945 7.433965137 7.728805634 7.909382153 7.737960156 163670254 pcc Carbon cycling Carbon fixation Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 7.315210638 7.408218688 7.243117294 7.096496925 7.552674678 7.231949479 7.346833671 154158990 linB Organic Remediation Pesticides related compound Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 7.303706047 7.196676405 7.177902117 7.15884088 7.002641409 7.450286605 7.433201202 7.285913982 212529488 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 8.072874974 7.966287153 7.817649781 7.943444422 7.794035116 7.993799964 7.822242232 7.794034737 7.649278658 169762317 ChrA Metal Resistance Chromium Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.58089809 7.283427844 6.868707938 7.261281441 7.418972797 7.283480064 7.097211284 7.416100934 95108412 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae; 7.822620591 8.000188434 7.853167783 7.681377355 8.053518437 8.373606343 8.023112636 7.946603979 8.050131962 37201822 linC Organic Remediation Pesticides related compound Vibrio vulnificus YJ016 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 7.311069359 7.723023518 7.445032337 6.862982268 7.095599456 7.232300327 229380158 fnr Stress Oxygen stress Oxalobacter formigenes OXCC13 7.631166136 7.55313088 7.23041356 7.225993432 7.684832858 7.285393062 6.993298172 38638 nifH Nitrogen Nitrogen fixation Nostoc sp. PCC 7120 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc; 8.318867289 7.913855456 7.776408542 7.853038756 7.696489314 8.149605054 7.845077869 7.650927456 7.35328224 4808638 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Sinorhizobium meliloti superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium; 7.929967626 7.811394634 7.655315268 7.141464262 7.813772426 7.390931601 7.831861711 7.557461128 56459564 pilin virulence pilin Idiomarina loihiensis L2TR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina loihiensis; 7.192727538 7.099311579 7.043423767 90419809 xylA Carbon cycling Carbon degradation Hemicellulose Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 8.564513601 8.413426916 8.20396858 8.004146598 8.421163124 8.290530002 8.311315051 8.305471283 8.216933592 84780296 grpE Stress Heat shock Sodalis glossinidius str. 'morsitans' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Sodalis;species:Sodalis glossinidius; 7.341555501 7.607447818 7.582355738 7.21514388 7.005257606 7.06242138 7.390285281 187727218 sigma_24 Stress Sigma factors Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 7.139755992 7.07482094 7.407093095 7.364232108 6.750212 7.763459882 209966350 Arylest Organic Remediation Aromatics Other aromatics Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 8.021731344 7.358883463 7.669009123 7.618085056 7.84687395 8.037784681 7.927678227 7.525788214 7.546084653 123964969 sigma_70 Stress Sigma factors Prochlorococcus marinus str. MIT 9303 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 6.971133882 7.09945769 162568575 aoxB Metal Resistance Arsenic uncultured bacterium superkingdom:Bacteria; 7.464577498 7.474557089 7.290864968 7.006582603 7.099023742 7.827185735 7.312742807 7.165208857 7.404675371 33243147 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.134116238 7.394863875 7.493136105 6.947333362 7.029143229 7.419785045 7.146840189 7.234669584 7.250073015 115402247 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.306844438 7.507407608 7.756017543 7.662408926 7.47388176 8.292384422 7.617625884 7.546954705 18314015 MFS_antibiotic Antibiotic resistance transporter Pyrobaculum aerophilum str. IM2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum aerophilum; 6.907185167 7.131321129 7.385425582 6.992893613 145570151 sigma_38 Stress Sigma factors Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 7.792369355 7.713702372 7.553522419 7.47669138 7.192550743 7.702775775 7.276335679 7.089828372 7.714458551 148570981 TerD Metal Resistance Tellurium Psychrobacter sp. PRwf-1 7.86985162 7.593754225 7.569450186 7.667820643 8.078636552 7.900300526 8.39455874 87306701 endoglucanase Carbon cycling Carbon degradation Cellulose Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 7.273706028 7.210547508 7.595431806 7.03849706 7.359246806 7.888886592 7.643590154 7.509085165 33575347 obgE Stress Radiation stress Bordetella bronchiseptica RB50 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella bronchiseptica; 7.781569727 7.289272152 7.65253952 7.33736881 7.433016045 7.863971236 7.379594168 7.212717936 7.47651752 467046 ppx Phosphorus Phosphorus utilization Mycobacterium leprae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.32114752 7.484793392 7.759873409 7.096294985 7.107312024 7.742489245 145617452 hydrogenase Energy process Energy process Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 7.774875571 8.216248475 7.797418005 7.709163839 7.937078786 8.448126589 8.170889563 7.830971473 119456450 mer Metal Resistance Mercury Lyngbya sp. PCC 8106 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Lyngbya; 7.132755513 7.704344035 7.820756567 7.836504983 7.170623106 7.850648597 7.208298282 7.327409661 7.616837571 94501689 pimF Organic Remediation Aromatics Aromatic carboxylic acid Oceanobacter sp. RED65 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Bermanella; 7.803404793 7.434603906 7.576076212 30249706 pilin virulence pilin Nitrosomonas europaea ATCC 19718 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas europaea; 7.186431001 6.929830593 24346002 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Shewanella oneidensis MR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella oneidensis; 7.477291184 7.319998461 7.16144215 7.115998394 7.010355088 114570880 merB Metal Resistance Mercury Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 7.823452672 7.807288382 7.87080812 7.597339155 7.961058028 7.902274693 7.8044415 7.664285367 90335608 fnr Stress Oxygen stress Aurantimonas manganoxydans SI85-9A1 7.434553346 7.418922519 7.317779992 6.84794795 7.076788769 7.746832335 6.993987873 7.195494084 7.275958269 126664464 nmoA Organic Remediation Aromatics Nitoaromatics Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 7.595184035 7.365518873 7.346112446 6.955480335 7.827986542 227823921 AceB Carbon cycling Carbon degradation others Rhizobium sp. NGR234 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 7.897394173 7.750437277 7.505905421 7.195453698 7.861283018 7.735669657 7.802711784 7.835146193 7.821427963 154303741 glucoamylase Carbon cycling Carbon degradation Starch Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 7.211187768 7.165511855 7.173917406 6.652054874 7.257916089 23493652 sigma_38 Stress Sigma factors Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 7.698440217 7.665681414 7.847363124 7.149297009 7.718582203 7.732775231 7.654947628 7.713155799 7.309720781 255531507 xylA Carbon cycling Carbon degradation Hemicellulose Pedobacter heparinus DSM 2366 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter;species:Pedobacter heparinus; 8.107026527 7.850004394 7.747586217 7.926979586 7.923439337 7.933841026 7.836336635 7.554360679 7.679982487 257869067 pstB Stress Phosphate limitation Enterococcus gallinarum EG2 7.263262644 7.121329007 7.133228772 6.793017331 7.290819837 118072769 endochitinase Carbon cycling Carbon degradation Chitin Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 7.207874563 7.429866099 7.465997883 7.398629414 7.317332639 7.173315673 7.395903224 7.106712425 182635027 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 7.61547422 7.761670455 7.771510756 7.036807816 7.732517382 7.474121408 7.722263257 7.791826343 87290604 sigma_38 Stress Sigma factors Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 7.744287208 7.240598733 7.970189024 7.418891493 7.770559331 7.669048141 7.830344847 7.828537606 7.805069344 10579810 alkK Organic Remediation Others Halobacterium sp. NRC-1 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halobacterium;species:Halobacterium salinarum; 7.550689139 7.131231982 7.417562112 7.184681097 7.121726542 7.550087273 7.294975921 7.08586966 94313955 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 7.813785954 7.634317312 7.80019414 8.045310433 7.686470649 8.183075738 7.507917426 7.744662388 7.620256861 115520449 ahpC Stress Oxygen stress Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.470330083 7.203866851 7.14422624 7.290932451 7.564382728 7.284714958 7.235591898 7.185482595 119898223 pimF Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 7.14231575 6.836057378 7.144433688 7.009981501 7.136135957 6.96970996 7.213162623 261857066 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.135766559 7.227145184 7.363321868 6.889018157 6.608985938 7.646247959 6.930406997 7.176179541 121602675 pstS Stress Phosphate limitation Bartonella bacilliformis KC583 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella bacilliformis; 7.401933066 7.259280391 6.865943371 7.020509659 7.401780093 21113492 glnA Stress Nitrogen limitation Xanthomonas campestris pv. campestris str. ATCC 33913 7.996567268 8.378534588 8.033568708 7.647419135 8.324146104 7.864399452 7.997222646 8.145939863 8.259997446 34732937 T4_type_portal_protein Bacteria phage REPLICATION Bacteriophage 44RR2.8t order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.634532445 8.141891646 7.499327153 7.405118211 7.910522094 7.540652258 7.370712974 254784465 ppk Phosphorus Phosphorus utilization Teredinibacter turnerae T7901 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 7.369409837 7.277674737 7.489843856 7.235788261 7.580260494 7.775762039 7.462264663 7.243576363 7.788034174 71144291 exaA Organic Remediation Chlorinated solvents Colwellia psychrerythraea 34H superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Colwelliaceae;genus:Colwellia;species:Colwellia psychrerythraea; 7.329987355 7.287970086 7.507663847 7.593784705 7.396024562 7.979898324 7.525800648 7.519827236 7.509370525 224712618 hzo Nitrogen Anammox uncultured planctomycete 7.259130025 7.179348263 6.708549381 7.543056329 184155751 glnA Stress Nitrogen limitation Lactobacillus fermentum IFO 3956 7.191571451 7.314254696 7.335161588 7.159040172 266622335 srt virulence surface protein Clostridium hathewayi DSM 13479 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 7.197954182 7.142884732 7.139935028 145592593 pcc Carbon cycling Carbon fixation Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 8.2077669 8.243210977 7.969974356 7.781318063 8.426200316 7.871239314 8.058088651 8.18750428 8.468194185 90324321 oxyR Stress Oxygen stress Photobacterium profundum 3TCK superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 7.430971061 7.125048153 144900230 pstC Stress Phosphate limitation Magnetospirillum gryphiswaldense MSR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 7.407585101 7.461644833 7.309302844 7.244535138 7.586995678 7.488100531 7.428770792 7.613225365 7.527704042 1119212 nmoA Organic Remediation Aromatics Nitoaromatics Chelatobacter heintzii superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Aminobacter; 7.185344088 7.06330418 7.086409917 116255325 nhh Organic Remediation Aromatics Nitoaromatics Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.867567953 7.766067248 7.493142346 7.396735176 7.691643293 229477514 pstC Stress Phosphate limitation Planctomyces limnophilus DSM 3776 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces limnophilus; 7.888778003 7.912604038 7.914893362 7.600031767 8.080032266 7.733840934 7.84551493 7.904944268 247537225 katE Stress Oxygen stress Dickeya zeae Ech1591 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 8.657249047 8.604681462 8.771174693 167704591 sigma_70 Stress Sigma factors Clostridium ramosum DSM 1402 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichi;order:Erysipelotrichales;family:Erysipelotrichaceae;species:Clostridium ramosum; 7.249445694 6.650379847 114326687 grpE Stress Heat shock Granulibacter bethesdensis CGDNIH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 7.477571169 7.615190288 7.480608415 7.467337851 7.915191983 7.448425004 7.672613741 7.794644515 7.521813528 119186237 chnB Organic Remediation Other Hydrocarbons Coccidioides immitis RS superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides immitis; 7.485909743 7.421650177 7.662674539 7.563823297 7.123347195 7.246434258 7.143293126 148289220 dsrB Sulphur sulfite reductase Clostridium botulinum A str. ATCC 3502 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium botulinum; 8.221884504 8.133815092 7.71852592 7.544197119 71908859 cumA Organic Remediation Aromatics Other aromatics Dechloromonas aromatica RCB 7.337606377 8.131935981 8.118026259 8.24378584 7.510461579 8.272710061 7.543521034 7.977738171 7.741285158 159184509 oxyR Stress Oxygen stress Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.309876365 7.105111371 124516607 ferredoxin_oxidoreductase Bioleaching Electron transport Leptospirillum sp. Group II UBA 7.454230746 7.759651069 7.641834825 7.247834545 7.234909592 7.459976458 7.499667975 7.52206378 14575675 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7.149188253 7.073438905 6.939484557 209538503 sigma_24 Stress Sigma factors Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.916714735 8.008539786 7.589762862 7.445483093 7.855636206 7.693557947 7.441999168 7.653778399 134099364 vanA Carbon cycling Carbon degradation Others Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 7.966570426 7.579059282 7.834620202 8.012295223 7.708341602 7.844255808 7.20540945 7.68261019 7.366126282 8515799 cumA Organic Remediation Aromatics Other aromatics uncultured bacterium 7.483147628 8.40442938 8.304887819 8.16376761 8.144020058 8.279669221 8.084905484 7.955103695 8.071413074 134052430 Al Metal Resistance Aluminum Desulfotomaculum reducens MI-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum reducens; 7.60770539 7.252561754 7.297714916 7.15057612 7.100391554 7.470831465 241759326 fnr Stress Oxygen stress Neisseria flavescens SK114 7.741437134 7.696540689 7.688470573 7.601463327 7.569341453 7.995345707 7.675498461 7.198335483 7.592040506 89101067 hrcA Stress Heat shock Bacillus sp. NRRL B-14911 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.414566179 7.25311047 7.502641927 6.732356468 6.886767091 7.419347152 6.925409345 7.175008798 261344572 MFS_antibiotic Antibiotic resistance transporter Providencia rustigianii DSM 4541 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 7.30180856 7.190270269 7.340946887 6.788347283 7.594782301 7.383480513 7.4204465 7.254178927 255296009 ppk Phosphorus Phosphorus utilization Rothia mucilaginosa ATCC 25296 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Rothia;species:Rothia mucilaginosa; 7.77467647 8.039749452 7.913191535 7.663571666 7.833134083 8.059283971 8.018881838 7.885107955 7.928391358 145702145 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Metallosphaera sedula DSM 5348 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Metallosphaera;species:Metallosphaera sedula; 7.144306822 6.95795407 213536671 exoglucanase Carbon cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.250032796 6.873467173 7.061271613 6.944539945 6.841025142 197119318 nrfA Nitrogen Dissimilatory N reduction Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 7.35164019 7.312173616 7.331868505 7.174095698 7.046063488 7.730668529 7.236256472 7.323511474 7.298517912 77164673 katE Stress Oxygen stress Nitrosococcus oceani ATCC 19707 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 7.120117725 7.10820745 7.730934 7.599245084 7.096033971 7.999291211 7.039769815 7.017314235 7.38827033 148521600 ChrA Metal Resistance Chromium Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 6.913145528 7.715735645 212672386 narI Stress Oxygen limitation Desulfovibrio piger ATCC 29098 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio piger; 8.29587101 7.862276885 7.910339166 8.062700752 7.831764388 8.062051973 7.874934387 7.787455556 163803322 hly virulence hemolysin Vibrio sp. AND4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.585343897 7.336281664 7.194172804 7.014625211 110646587 pilin virulence pilin Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 7.324791356 7.034020463 152992995 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Sulfurovum sp. NBC37-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;genus:Sulfurovum; 7.430827186 7.317791507 7.381341597 7.49078399 7.022050903 7.532320856 6.921820924 6.976245769 7.109350743 197086215 mer Metal Resistance Mercury Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 7.661299542 7.439231862 7.151038473 7.254509469 7.30813596 7.632615394 253777952 cda Carbon cycling Carbon degradation Starch Vibrio parahaemolyticus RIMD 2210633 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.227527945 7.345383826 7.06842972 6.928054982 6.888051579 7.413094564 7.134902595 7.087860268 55773606 catechol_B Organic Remediation Aromatics Other aromatics Thermus thermophilus HB8 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 7.876064699 7.565858883 7.898164066 7.480126208 7.635579266 7.913253526 7.824584306 7.471886993 154686144 SMR_antibiotics Antibiotic resistance transporter Bacillus amyloliquefaciens FZB42 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 7.380541114 7.198861511 7.552022021 7.28046746 7.078993817 7.539738144 7.104832491 7.153058678 260914593 sigma_24 Stress Sigma factors Pasteurella dagmatis ATCC 43325 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Pasteurella;species:Pasteurella dagmatis; 7.199935839 7.169604761 6.870804581 7.385277972 7.262482919 7.30079945 166368206 amyA Carbon cycling Carbon degradation Starch Microcystis aeruginosa NIES-843 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 7.718151157 7.438173444 7.724866922 7.830420466 7.733360995 7.457818149 7.703655385 56787883 pcpE Organic Remediation Herbicides related compound Novosphingobium subarcticum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 7.702161543 7.45954927 7.084914834 7.691639985 7.14048803 7.124974737 74317327 dsrA Sulphur sulfite reductase Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 7.315006118 7.533798904 7.305502563 7.71447594 227988543 SMR_antibiotics Antibiotic resistance transporter Meiothermus silvanus DSM 9946 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 7.356061194 7.04453121 145555295 nifH Nitrogen Nitrogen fixation Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 7.368090659 6.990619695 6.934324147 7.446866596 121607822 pcc Carbon cycling Carbon fixation Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 7.62186587 7.12463328 7.864266723 8.191457374 7.893956597 8.271823215 8.16321007 8.289582528 7.921457095 15594159 groEL Stress Heat shock Campylobacter rectus superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter; 7.209208994 7.648031023 7.450029965 7.174719175 119816169 nagG Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.274111551 7.929878348 7.824561498 7.615729934 8.403806785 7.656425423 7.854857719 8.025234074 8.039087326 112462819 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.556365519 7.566771956 7.201496315 7.494676278 7.170561515 26278776 narG Nitrogen Denitrification uncultured bacterium 7.617963764 7.505998955 121595133 pimF Organic Remediation Aromatics Aromatic carboxylic acid Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 7.684233261 7.140370716 7.064891238 7.747263575 7.631016418 7.629378898 7.569194452 7.80603332 7.605485501 17427452 alkK Organic Remediation Others Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 7.604270302 7.746326102 7.689213239 7.044453917 7.432056523 7.782871754 7.629529363 7.263855433 7.208221668 17158758 ZntA Metal Resistance Zinc Nostoc sp. PCC 7120 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc; 6.873140408 6.763523424 7.124525412 149822860 ChrA Metal Resistance Chromium Limnobacter sp. MED105 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 8.189709716 8.701953628 8.14743175 8.096805837 8.165878741 8.199295102 7.991249003 7.727728015 7.956305556 212528630 ara_fungi Carbon cycling Carbon degradation Hemicellulose Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.48531697 7.851995865 7.536888321 8.106678959 7.691867816 8.135655292 7.970523006 163259205 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 7.64618009 7.399567409 7.723707233 7.575796733 7.584674128 7.509766988 7.881364087 7.615239638 77378616 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.453928665 7.593826093 7.319877884 156975005 nrfA Nitrogen Dissimilatory N reduction Vibrio harveyi ATCC BAA-1116 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 7.162398338 7.170509295 7.419011777 6.95259709 7.429218399 7.170708631 7.33005681 126172263 cytochrome Energy process Energy process Shewanella baltica OS155 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 7.488071158 7.530565161 8.141135209 8.270901703 7.748668547 8.293780538 7.774473732 8.028674769 8.237608546 209959253 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 7.8059611 7.915659653 8.166463136 7.951604895 7.8553141 7.737085057 7.859323715 7.621991829 145259387 linC Organic Remediation Pesticides related compound Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8.180246393 8.268763899 8.227509486 8.188684275 8.435738905 8.342266354 8.320108887 8.289210847 8.09980025 213987545 silC Metal Resistance Silver Acinetobacter baumannii AB307-0294 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 7.136315738 7.089157 7.087914417 167074096 tfdA Organic Remediation Aromatics Chlorinated aromatics Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.745925947 7.704732213 7.619395411 7.489250372 7.425506261 7.944417776 7.800803929 7.696549659 7.681442059 86279822 AceB Carbon cycling Carbon degradation others Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.555400423 7.188578671 7.488072656 7.058377414 6.751797408 7.613470519 6.945791002 7.119471712 56419285 ZntA Metal Resistance Zinc Geobacillus kaustophilus HTA426 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus kaustophilus; 7.901651504 7.88855688 7.959267127 7.824974668 7.931083906 8.201238219 8.035093268 242220070 katE Stress Oxygen stress Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 7.290468028 7.162592112 7.202830129 21241568 amyA Carbon cycling Carbon degradation Starch Xanthomonas axonopodis pv. citri str. 306 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas axonopodis; 7.604303124 7.434788827 7.420049275 7.298512324 7.33056135 161167921 sigma_32 Stress Sigma factors Sorangium cellulosum 'So ce 56' 7.700473301 7.890555675 7.495034573 7.213223547 146397082 pstA Stress Phosphate limitation Geobacter uraniireducens Rf4 7.606301546 7.606210571 7.855412454 7.913782763 7.745336241 7.564683164 7.776724245 146401124 rfaD_EPS Bioleaching EPS Acidiphilium cryptum JF-5 7.194445724 7.221519374 7.64205089 7.64947584 7.184459077 7.809574695 7.860461322 7.6633492 8.356127653 126629086 CadA Metal Resistance Cadmium Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 7.672322186 7.764477671 7.126490683 7.329445334 7.299568121 7.500086491 7.777617453 220711709 ophC Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.881597951 7.928589427 7.877382884 7.504208374 7.96160942 7.912655412 7.754596172 7.938043311 8.007680927 149831201 hrcA Stress Heat shock Ruminococcus obeum ATCC 29174 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus obeum; 6.85210855 7.085651566 7.370945285 99083451 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.386242335 7.194275477 7.218228422 6.944421247 7.148212679 7.517576373 7.088558198 7.139568102 7.253493518 113936820 linB Organic Remediation Pesticides related compound Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 7.827645765 7.90296864 7.773947297 7.824174722 8.555011546 8.090883132 8.046415777 7.987542316 23127513 nifH Nitrogen Nitrogen fixation Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 7.52501338 7.206909585 6.846821766 6.900681796 6.927105483 7.581470692 7.196639015 7.050049847 183226229 ahpC Stress Oxygen stress Lactobacillus fermentum IFO 3956 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus fermentum; 8.148949767 7.980852069 8.121828779 8.257927337 8.71889963 8.548751076 8.380914708 8.198455982 88812343 sigma_24 Stress Sigma factors Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 7.367484749 6.89505954 7.248907733 6.773120465 7.417822403 6.858810736 6.922996638 6.833420862 149754556 glnA Stress Nitrogen limitation Dorea longicatena DSM 13814 8.523360621 7.951952645 7.966102813 8.136828073 8.226307502 7.914769878 8.056265772 7.714242995 17430697 xylC Organic Remediation Aromatics BTEX and related aromatics Ralstonia solanacearum 8.032020268 7.756318342 7.549328447 7.253966634 7.806310568 7.704873049 7.665909648 7.077839206 7.793550104 67087879 nmoA Organic Remediation Aromatics Nitoaromatics Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 7.676266643 8.186458086 8.14317232 8.018095671 8.215744877 8.199431204 8.111897829 8.206419532 7.97024898 241775335 fnr Stress Oxygen stress Allochromatium vinosum DSM 180 8.132515418 7.763830422 7.777761583 7.398286646 8.057512617 7.657394052 7.4665938 7.514819329 8.100997592 21957263 TerZ Metal Resistance Tellurium Yersinia pestis KIM superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia pestis; 7.152339041 7.072051635 118669137 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.814708372 7.688136288 7.455706538 6.726614572 7.446998475 7.56872573 7.335223775 7.201036068 7.291181088 167622119 narH Stress Oxygen limitation Shewanella halifaxensis HAW-EB4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella halifaxensis; 7.912140115 7.418325054 218667851 fnr Stress Oxygen stress Acidithiobacillus ferrooxidans ATCC 23270 7.529297001 7.324561831 7.529415766 6.740587828 7.087246829 7.570305394 7.350146946 7.149448742 7.332866183 198254838 gyrB other category gyrB Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 7.009447924 6.765274574 7.135527257 109900192 4HBH Organic Remediation Aromatics BTEX and related aromatics Pseudoalteromonas atlantica T6c 7.882569436 7.554117008 7.228426774 7.42665061 7.295426772 255994051 obgE Stress Radiation stress Eubacterium saphenum ATCC 49989 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium saphenum; 7.196110049 6.873262106 7.117437114 633162 terminal_protein_linear_DNA_phage Bacteria phage REPLICATION Streptococcus phage Cp-1 order:Caudovirales;family:Podoviridae; 7.016901878 7.339584546 7.034712364 163942234 atzC Organic Remediation Herbicides related compound Bacillus weihenstephanensis KBAB4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus weihenstephanensis; 7.061593254 7.104287227 56381078 phoA Stress Phosphate limitation Geobacillus kaustophilus HTA426 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus kaustophilus; 7.450332129 7.029916002 7.400579336 7.559571934 6.996384825 7.571177251 6.999046568 7.258651762 7.61928314 151302357 APS_AprB Sulphur adenylylsulfate reductase Desulfotomaculum halophilum superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 7.347177339 7.204048944 6.98204114 6.567102315 7.351752164 32397456 xylA Carbon cycling Carbon degradation Hemicellulose Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 8.267286695 8.227181083 8.133717175 8.485206929 8.474889072 8.101241532 8.609598023 8.530408516 8.174082805 95116355 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 7.350922261 7.209415101 7.697031889 7.386998226 7.271831376 7.670329224 7.090518474 6.959545517 156110605 sigma_24 Stress Sigma factors Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 7.108394211 7.233647289 7.111448467 6.83146414 7.183410791 87135164 pimF Organic Remediation Aromatics Aromatic carboxylic acid Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 7.772389388 7.62219033 7.763395648 7.610546877 8.06397695 7.822266124 7.669159795 7.366530226 52784547 bglP Stress Glucose limitation Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 8.156110168 7.716657303 7.684120058 7.996143478 167594127 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7.277271542 6.94676196 7.027200471 26278728 narG Nitrogen Denitrification uncultured bacterium 7.985317238 7.787693366 7.842250582 7.885965334 7.582477713 8.190511386 7.847966991 7.942370368 7.577621145 5689248 mhpB Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 7.927839495 8.135945109 8.145083365 7.674634549 8.354396587 8.099721286 7.871034225 8.027894656 8.021940588 209171680 dsrA Sulphur sulfite reductase Candidatus Thiobios zoothamnicoli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Candidatus Thiobios; 7.910605576 8.182725469 8.094887752 7.444575457 8.15999868 7.889055736 8.106537197 7.842740627 8.219389531 219678827 pstS Stress Phosphate limitation gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.82472912 8.056746033 7.603721705 8.334773881 8.117254762 7.636643926 8.09510836 90420029 ppx Phosphorus Phosphorus utilization Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 7.533348754 7.639453845 7.912620262 7.585143398 7.432868152 8.061388551 7.557398804 7.730913224 7.623750186 239814765 SMR_antibiotics Antibiotic resistance transporter Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 7.576306808 7.052327649 7.348131101 7.420872075 7.285196065 7.38506989 227238191 obgE Stress Radiation stress Mobiluncus curtisii ATCC 43063 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus curtisii; 7.110939412 7.260562396 7.43237799 7.040665862 7.956223458 198254622 nagG Organic Remediation Aromatics Aromatic carboxylic acid Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 7.164749934 7.839244834 7.641993342 7.922138111 8.237086898 7.823934657 8.402984982 158332190 ChrA Metal Resistance Chromium Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 8.015887651 7.643604823 7.504247421 7.598005059 7.86954123 7.681908724 7.632425465 7.729109029 67921480 pstB Stress Phosphate limitation Crocosphaera watsonii WH 8501 6.886653676 6.746636787 7.18631932 76056965 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.058663834 7.707491592 7.628971068 7.219821359 7.70145946 7.737745074 7.649449955 7.81320909 197088899 sigma_24 Stress Sigma factors Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 7.77827549 7.644320114 7.573518166 7.098491378 7.283357895 7.950356048 7.610376255 7.17930919 7.470142363 44829077 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.675900519 7.291206315 7.404262719 7.562326568 7.952026069 62816022 cda Carbon cycling Carbon degradation Starch Haloferax mediterranei 7.593178476 7.869635993 7.786939844 7.765910829 7.934034767 8.118564318 7.730790373 7.683921781 8.103045452 77378743 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.282398465 7.601703626 7.685024474 7.134773117 7.308546085 7.390981064 218715997 BpH Organic Remediation Aromatics Aromatic carboxylic acid Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 7.091843972 6.896702436 228553432 AceA Carbon cycling Carbon degradation others Citrobacter youngae ATCC 29220 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter youngae; 8.220246452 8.119084703 7.816209376 7.52574497 7.634228869 7.588903693 7.548902184 7.476755412 121998736 narI Stress Oxygen limitation Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 8.199076818 8.293847416 8.068806568 8.206685627 8.521745847 8.13381471 8.525238179 8.338173112 8.20405692 53850908 dsrB Sulphur sulfite reductase anaerobic bacterium sk.prop8 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae; 7.308962737 7.48174711 7.186037026 7.521452694 62288819 Host_recognition_T4_type Bacteria phage HOST RECOGNITION/STRUCTURAL Enterobacteria phage RB43 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 8.228687037 8.058974628 7.801306558 7.990893272 8.262126469 8.102290973 8.086941094 8.013997872 8.23121331 119358213 obgE Stress Radiation stress Chlorobium phaeobacteroides DSM 266 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 7.386896072 6.826124341 6.979691856 6.990717373 6.8962792 7.600307134 40741315 pheA Organic Remediation Aromatics Other aromatics Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.635933497 7.50409142 7.115272019 7.071166805 7.556121008 6.94556149 7.10364407 24421257 nirS Nitrogen Denitrification uncultured organism 8.065031664 7.84764984 7.529620679 7.693703898 8.062071034 8.330989939 7.696089475 7.979649402 182414363 pstA Stress Phosphate limitation Opitutus terrae PB90-1 7.145389798 7.430527342 7.009931164 6.550876218 7.65402535 6.9107401 7.516936193 145237254 pheA Organic Remediation Aromatics Other aromatics Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.81748213 7.672713902 7.510833023 7.7147804 7.689853347 7.722316015 7.323078219 7.845368376 167663400 ppk Phosphorus Phosphorus utilization Clostridium scindens ATCC 35704 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium scindens; 7.451285092 7.557070177 7.982654367 7.930545028 7.58753955 8.182876104 7.736148831 7.939348947 8.177084078 163748800 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Shewanella benthica KT99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella benthica; 6.931045594 6.9336474 7.240978725 7.029294722 7.513133382 7.065893361 7.088334081 7.136743315 37526050 alkK Organic Remediation Others Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 7.070167539 6.889746739 6.97747915 7.332838662 154244879 bphC Organic Remediation Aromatics Polycyclic aromatics Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 7.869960041 8.051534426 8.097408131 7.589190161 8.161604931 7.988545222 7.934153683 8.082573057 7.553966418 115516724 pmdAB Organic Remediation Aromatics Others Rhodopseudomonas palustris BisA53 8.018865261 7.821490989 7.974746378 7.907305274 8.62748988 7.783139707 8.22757058 7.8024834 8.314568692 149376729 SMR_antibiotics Antibiotic resistance transporter Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 6.890672319 7.018559076 56459289 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Idiomarina loihiensis L2TR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina loihiensis; 7.8280027 7.858104596 7.710751866 7.647914697 7.700791621 8.04872571 7.555206217 7.756274279 77384304 atzA Organic Remediation Herbicides related compound Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.705513775 7.750503694 7.51845525 7.543035933 7.508410501 7.935600855 7.736539015 7.661764325 7.491892464 160917502 narG Nitrogen Denitrification uncultured bacterium 7.680502923 7.532275846 7.514267843 7.626083927 7.87867226 7.946170604 7.86455582 7.624409434 222106914 nmoA Organic Remediation Aromatics Nitoaromatics Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 7.321909895 7.316664704 7.443163546 6.763996974 7.35323413 7.820806448 7.092422197 7.246982253 7.428902798 167594175 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7.529013874 7.308881405 7.388752634 7.194843958 7.57450734 7.632612465 7.562265095 7.319531695 7.544038275 52786412 pstS Stress Phosphate limitation Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 7.336862368 7.284717523 6.849887502 7.204968506 7.301289802 7.099202435 126731176 ureC Nitrogen Ammonification Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 8.355967752 8.422025691 7.930349651 8.255683855 8.385607528 92430144 exaA Organic Remediation Chlorinated solvents Methylomicrobium sp. HG-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomicrobium; 7.22707319 7.058216036 7.005420284 7.005381975 7.526299713 75674228 oxyR Stress Oxygen stress Nitrobacter winogradskyi Nb-255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 8.59039051 8.303278674 7.804514459 8.243560269 8.113682367 8.39954507 8.046786635 8.147947447 7.855324516 147849693 cap virulence capsule Synechococcus sp. RCC307 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.609820394 7.647600402 7.582303491 7.599982025 7.865264266 7.893006161 7.944870676 7.570966713 7.608701235 162568517 aoxB Metal Resistance Arsenic Pseudomonas sp. 72 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.845605106 8.103445646 7.973672807 7.794925155 8.159089555 8.00249833 8.052074278 7.766499681 7.756617648 256588427 fnr Stress Oxygen stress Cyanothece sp. PCC 8802 7.33037256 7.241493139 7.058208872 7.468886763 186700241 fnr Stress Oxygen stress Yersinia pseudotuberculosis PB1/+ 7.65436009 7.349345524 37496849 amoA Nitrogen Nitrification superkingdom:Bacteria; 7.54857821 7.640911318 7.612610714 7.699010726 7.924899223 8.177910678 8.001633685 7.964870297 7.714918541 152029032 CopA Metal Resistance Copper Anaeromyxobacter sp. Fw109-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 7.786157042 7.786684218 7.809551406 7.326995479 7.973205224 8.077914555 8.021979386 7.867607005 7.505743146 126738069 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.009971976 7.282762221 166897671 bphC Organic Remediation Aromatics Polycyclic aromatics Dyella ginsengisoli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Dyella; 8.554618626 8.288587284 8.310787983 8.33729015 8.362483957 8.196802974 8.20793657 7.704024926 218673185 nagG Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium etli GR56 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.196105802 8.2393301 8.3217379 7.943970025 8.286528301 8.295465878 8.095680269 8.363226465 116513233 gyrB other category gyrB Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 7.3383857 7.208310617 6.908427744 7.378538856 162285371 mer Metal Resistance Mercury Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 8.093544729 8.186754565 7.688864201 7.825841976 8.396445506 7.998681349 8.206222817 7.81564809 8.155726411 209499852 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.889693197 7.848984561 7.757163031 7.600479077 7.984030282 7.719565229 7.761641461 7.810143986 7.60912282 120607565 pilin virulence pilin Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 7.663605964 7.718026522 7.366817507 7.361195322 7.436911526 7.620091503 7.568923868 7.463955125 7.440364243 157679044 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.468708341 7.450397671 7.753498094 7.558771609 7.348390595 7.832825576 7.324286114 7.668577653 7.602516426 190687442 CopA Metal Resistance Copper Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 8.038260667 7.727623947 7.594670069 7.517057288 8.023546119 7.936549067 7.929318181 7.793965942 7.933805984 148240951 glucoamylase Carbon cycling Carbon degradation Starch Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.334144912 7.246238959 7.499361254 7.280187483 7.059671046 7.163077178 7.101033734 7.174812196 110635604 nagI Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 7.695570915 7.795223127 7.307067453 7.173576652 7.65409721 7.773446253 7.544725362 7.279075688 7.410786275 167769433 ChrA Metal Resistance Chromium Anaerotruncus colihominis DSM 17241 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Anaerotruncus;species:Anaerotruncus colihominis; 7.221121665 6.901349719 52424080 sigma_32 Stress Sigma factors Mannheimia succiniciproducens MBEL55E 7.345412318 7.139264261 7.260720263 7.089473442 7.777921665 116013290 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.639968593 7.578982481 7.798301372 7.438650309 7.544641442 7.700252449 7.6102095 197297322 glnA Stress Nitrogen limitation Ruminococcus lactaris ATCC 29176 7.133262058 7.054201733 7.24107235 6.688668917 6.42642049 7.342227634 42494410 cmuA Organic Remediation Chlorinated solvents uncultured bacterium superkingdom:Bacteria; 7.657403219 7.589971308 7.245934332 7.386768936 7.45769716 7.639638667 7.242260431 7.193883132 218294897 sox Sulphur Sulphur oxidation Thermus aquaticus Y51MC23 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus aquaticus; 7.77042387 7.659640978 7.278845162 7.529418282 7.54328773 7.993071563 7.21684513 7.483445487 7.643668354 50875691 cap virulence capsule Desulfotalea psychrophila LSv54 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfotalea;species:Desulfotalea psychrophila; 7.999003663 7.964639803 7.261298466 7.978503722 6.813821353 7.276498527 151581235 nifH Nitrogen Nitrogen fixation Opitutaceae bacterium TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 7.597027608 7.692100675 7.53813754 7.524400569 7.887332244 7.992503658 7.881064453 7.746352184 7.673906706 88185776 pheA Organic Remediation Aromatics Other aromatics Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 8.033072242 7.953877923 7.82336194 7.779011949 7.852247196 7.908097173 7.496640834 7.767367314 116098780 hly virulence hemolysin Lactobacillus brevis ATCC 367 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus brevis; 7.447240078 7.747206097 7.662962583 7.272905387 7.683054169 7.579332667 7.672757875 7.825322435 7.977177513 33567785 SMR_antibiotics Antibiotic resistance transporter Bordetella bronchiseptica RB50 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella bronchiseptica; 7.62490843 7.204304717 7.142254629 6.765892899 7.228250454 7.601835455 7.33043376 7.134252765 7.220514331 183176202 SMR_antibiotics Antibiotic resistance transporter Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 7.935583093 7.50347295 7.343068886 7.735777002 7.624473731 7.585188865 7.31654937 7.660054097 85116544 glnA Stress Nitrogen limitation Neurospora crassa OR74A 7.321435655 7.472300074 7.426781171 7.621651616 7.385977636 7.925586212 7.513374568 7.710053105 7.831351639 18558890 nosZ Nitrogen Denitrification uncultured temperate forest soil bacterium superkingdom:Bacteria; 7.182502528 7.167833364 6.933415802 6.809874218 7.078683611 78221327 cytochrome Energy process Energy process Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 7.76059224 7.718491511 7.299551691 7.25587481 7.637629375 7.709023564 7.502653813 7.544108797 7.3805632 71849052 Xamo Organic Remediation Other Hydrocarbons Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 7.432219243 7.408348624 7.095290866 7.334839335 7.732193657 7.31651833 7.126388483 7.515474519 114562519 pimF Organic Remediation Aromatics Aromatic carboxylic acid Shewanella frigidimarina NCIMB 400 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella frigidimarina; 7.889769973 7.899639317 7.892467463 7.947395684 8.172175649 7.159655019 8.228372467 8.005912029 7.941453081 113477774 sigma_24 Stress Sigma factors Trichodesmium erythraeum IMS101 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Trichodesmium;species:Trichodesmium erythraeum; 7.1794848 7.068746018 7.143018385 88643438 dsrB Sulphur sulfite reductase uncultured prokaryote 7.623024527 7.442207905 7.446682078 6.93221138 7.430512663 7.414582599 7.205565891 198252001 Arylest Organic Remediation Aromatics Other aromatics Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 7.675953977 7.628238382 7.643979045 7.420812611 7.969121357 7.864633134 7.673943629 7.463297795 7.670059627 62468062 bco Organic Remediation Aromatics Aromatic carboxylic acid uncultured bacterium superkingdom:Bacteria; 7.391843663 7.348760522 7.098162996 7.383463811 7.511067943 7.162301547 7.405086931 7.238150061 157919093 pcc Carbon cycling Carbon fixation Salinispora arenicola CNS-205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 7.929587183 7.571362647 7.368218176 7.49137864 7.868563221 7.966159869 7.879929436 7.671075352 7.748499907 118667843 tfdA Organic Remediation Aromatics Chlorinated aromatics Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.204651281 7.331886004 7.581083037 7.294152754 7.446749047 7.784903581 7.613781237 7.47472338 7.857966779 254504060 pstA Stress Phosphate limitation Labrenzia alexandrii DFL-11 7.609087377 7.660595157 7.309517019 7.148850044 7.268653312 7.574603117 7.332975706 7.328206477 184191535 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.236725741 7.298167783 7.30960917 6.823068762 7.492968245 7.584393978 7.419690352 7.432003798 255652757 amoA Nitrogen Nitrification superkingdom:Archaea; 7.511560502 7.129437358 7.190870623 6.983221925 7.46383389 196155099 arcA Stress Oxygen limitation Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 7.174357794 7.251986527 7.308274229 6.906563969 7.099396779 7.376354326 187735378 CopA Metal Resistance Copper Akkermansia muciniphila ATCC BAA-835 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Akkermansia;species:Akkermansia muciniphila; 8.238571703 7.83880394 8.179909204 7.667241914 8.073985455 7.665672222 7.868639647 7.944684701 7.792799378 147886122 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 7.402233554 7.195311255 226358396 rubisco Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.117215049 7.485614423 7.169970295 7.096194404 7.490602556 7.158377421 7.179410952 7.263769611 83646016 type_III_secretion virulence secretion Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 8.698182795 8.762923162 8.861828591 189435507 MFS_antibiotic Antibiotic resistance transporter Bacteroides intestinalis DSM 17393 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides intestinalis; 8.015880282 7.722290183 7.546651168 7.576071769 7.53445184 7.477263654 7.569033369 22779361 exaA Organic Remediation Chlorinated solvents Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.95567033 7.953197152 8.179204842 7.959893792 8.134494404 154350637 TerZ Metal Resistance Tellurium Bacillus amyloliquefaciens FZB42 7.927631926 8.20712392 7.60801267 7.388311554 7.614996443 7.887836158 7.788566525 7.726693455 7.464488438 109897093 katE Stress Oxygen stress Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 7.288989092 7.19538088 7.154754377 7.440794048 7.484274388 7.290530473 7.499889994 171088413 pulA Carbon cycling Carbon degradation Starch Geobacillus sp. WCH70 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.039895353 6.879768609 6.917150868 6.655905161 7.362861955 260776744 AceB Carbon cycling Carbon degradation others Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 7.666929881 7.443177466 7.257887293 7.831487127 7.943866596 7.805283953 7.518831282 7.555445285 225873753 obgE Stress Radiation stress Acidobacterium capsulatum ATCC 51196 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteria;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 7.691495953 7.290705851 7.398222627 6.931356243 7.295552722 7.721190661 7.217326071 7.035329735 7.275301496 126105525 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.183931509 7.186192531 7.455799947 7.464252226 7.790055908 7.064559975 6.944944367 7.575282488 193086057 pstB Stress Phosphate limitation Chlorobaculum parvum NCIB 8327 7.484107242 7.150821396 6.66353282 7.407970694 217977023 pstC Stress Phosphate limitation Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 7.856906 7.802491162 7.303637425 7.738708387 7.419704138 7.505560279 7.636957331 122088672 katE Stress Oxygen stress Yersinia enterocolitica subsp. enterocolitica 8081 7.195477256 7.361600767 7.3012157 7.102609697 7.228869551 7.22345309 7.319310541 7.469703624 198257709 mannanase Carbon cycling Carbon degradation Hemicellulose Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 6.993383448 7.336877039 6.970635398 7.404813951 7.472911034 6.912947138 7.242605666 1101742 rubisco Carbon cycling Carbon fixation Prochloron sp. superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochloraceae;genus:Prochloron; 7.503881928 7.277368193 6.984261711 156740052 sigma_24 Stress Sigma factors Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 7.672945435 7.336367065 7.660126384 229327327 pcc Carbon cycling Carbon fixation Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 7.103253111 6.948994635 7.160869877 6.637308123 7.367635256 7.058440315 7.092884245 7.389306129 157845575 ahpF Stress Oxygen stress Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 7.584678389 7.776944638 7.564828199 7.595057226 8.006535034 7.995776394 7.368848162 7.483526819 7.67031415 110284802 sigma_38 Stress Sigma factors Chelativorans sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 7.854796555 7.845199004 7.390380406 7.663758242 7.716492847 7.817120583 7.986390907 7.416618123 156234694 fnr Stress Oxygen stress Roseiflexus castenholzii DSM 13941 7.445476514 7.343655228 7.33700139 7.251004947 7.022654854 148474704 nrfA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.811989663 7.677946208 7.892027001 7.847538984 7.973572127 8.179444687 7.987857894 8.268697296 237785288 glnA Stress Nitrogen limitation Corynebacterium kroppenstedtii DSM 44385 7.27965414 7.132529568 7.12391984 6.911185491 7.373222132 7.082107095 7.021056654 7.196081303 90954625 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.329528462 7.420227405 7.179185646 6.838391856 7.013333862 7.439150484 7.015947152 7.501645595 99030559 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 7.520488279 7.443869805 7.425981619 7.343380324 8.064454139 7.668863871 7.709040031 7.620710448 153005080 sigma_32 Stress Sigma factors Anaeromyxobacter sp. Fw109-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 8.577847379 8.018819309 7.862059223 7.900078877 31540489 endochitinase Carbon cycling Carbon degradation Chitin uncultured Neotyphodium superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Clavicipitaceae; 7.460213168 7.260380424 7.353520688 7.320525807 6.995150963 7.686093177 7.246930888 7.471201724 7.582429121 256372672 sigma_24 Stress Sigma factors Acidimicrobium ferrooxidans DSM 10331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Acidimicrobiales;family:Acidimicrobiaceae;genus:Acidimicrobium;species:Acidimicrobium ferrooxidans; 8.316823892 8.55426209 8.11037226 8.273652082 8.139931665 8.293637549 8.16767803 8.079133887 8.036999877 163261784 bphA Organic Remediation Aromatics Polycyclic aromatics Bordetella petrii 7.528703824 7.77184996 7.57071979 7.003272048 7.568658423 7.6220378 7.628692464 7.551865975 8.023079935 209498404 CDD Organic Remediation Aromatics Other aromatics Burkholderia sp. H160 7.910546596 7.792554871 7.798004025 7.606325367 7.826501792 7.851821196 7.851705759 7.658366437 7.711938592 189402001 ureC Nitrogen Ammonification Escherichia coli O157:H7 str. EC4401 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 7.253440542 7.093001503 121593480 proV Stress Osmotic stress Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 8.726686222 8.459098078 8.401091178 8.356757568 8.142889853 8.864821631 89897040 katE Stress Oxygen stress Desulfitobacterium hafniense Y51 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 7.836908484 7.472004104 6.71768023 7.385325485 144897389 nirS Nitrogen Denitrification Magnetospirillum gryphiswaldense MSR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 7.636959447 7.753100675 7.696884497 7.658101674 7.368431927 218781402 fnr Stress Oxygen stress Desulfatibacillum alkenivorans AK-01 7.291230735 7.771270852 7.546740374 7.503123501 7.492221995 7.746951157 7.492295111 7.671749336 7.530946875 4914630 todF Organic Remediation Others Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.013965606 8.41540472 7.907331822 7.504417245 8.242527235 7.75726813 8.074516446 8.005945423 8.082096643 1401342 B_lactamase_A Antibiotic resistance Beta-lactamases superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 7.066237795 6.656337317 7.002227112 77544524 pstB Stress Phosphate limitation Pelobacter carbinolicus DSM 2380 7.576321712 7.413984002 7.411784178 7.966044028 7.706023764 7.887163553 8.192267511 7.939456234 21675071 gyrB other category gyrB Chlorobium tepidum TLS superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 8.478365937 8.311144668 8.055024733 8.441602194 8.880050031 8.578086949 8.458028867 8.533832183 147736466 atzA Organic Remediation Herbicides related compound Thermotoga petrophila RKU-1 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga;species:Thermotoga petrophila; 7.233599125 6.861681809 6.86744424 6.874833566 7.00468734 27530813 gyrB other category gyrB Rhodococcus fascians superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7.92207396 7.741827077 7.563438382 7.36716269 7.879324071 7.801157456 7.820383279 7.258910241 7.550600159 167593470 atzA Organic Remediation Herbicides related compound Heliobacterium modesticaldum Ice1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Heliobacteriaceae;genus:Heliobacterium;species:Heliobacterium modesticaldum; 7.93694676 8.01696033 7.793821137 7.461447785 7.587723539 7.785307137 7.930105444 7.671855682 111282230 pcc Carbon cycling Carbon fixation Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 7.255572415 7.295092692 7.13556872 6.73573007 7.630576921 7.371639157 7.253932601 7.155366125 88790999 ArsA Metal Resistance Arsenic Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 7.240370385 7.395980009 7.536004053 7.762352 7.491039 73541850 phoB Stress Phosphate limitation Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.609532127 7.742811852 7.601684496 75911234 linB Organic Remediation Pesticides related compound Anabaena variabilis ATCC 29413 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena variabilis; 7.06702011 6.875926981 7.062943163 7.202760668 7.12902336 157848573 pilin virulence pilin Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 7.535005966 7.403434117 7.494717519 150836053 sigma_24 Stress Sigma factors Marinomonas sp. MWYL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 7.9150545 8.48378395 7.941926741 7.953149025 8.008181994 7.994903369 7.475518303 7.750676834 62149248 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.25111077 7.473555213 7.19216601 6.9790295 7.234857249 7.629761324 7.219849412 7.329710656 7.461527355 46439977 ZntA Metal Resistance Zinc Candida albicans SC5314 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;genus:Candida;species:Candida albicans; 7.018488361 7.062485148 6.977243393 7.02097821 7.028263046 7.326161433 262033713 endochitinase Carbon cycling Carbon degradation Chitin Vibrio cholerae CT 5369-93 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 7.89827924 7.649141778 7.600421078 7.195839688 7.778193741 7.476449395 7.64393828 7.663772454 7.863398819 16304107 ppk Phosphorus Phosphorus utilization Nodularia spumigena superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nodularia; 6.817136237 7.040618052 7.045708246 6.901239617 6.945844468 10956842 cumA Organic Remediation Aromatics Other aromatics Novosphingobium aromaticivorans 7.43456289 7.242521698 7.25875098 7.244138464 7.235334157 7.505849551 7.766368129 7.540758609 7.015926984 238763399 xylA Carbon cycling Carbon degradation Hemicellulose Yersinia kristensenii ATCC 33638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia kristensenii; 7.199187124 6.982106324 914897 ureC Nitrogen Ammonification Ureaplasma urealyticum superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Mycoplasmatales;family:Mycoplasmataceae;genus:Ureaplasma; 7.492193395 6.659909647 260838196 hly virulence hemolysin Vibrio sp. RC341 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.104253056 7.250968974 6.929303021 7.431051604 7.057886813 6.934978586 6.857292634 67158934 ZntA Metal Resistance Zinc Azotobacter vinelandii AvOP 7.481285763 7.643408629 7.413004874 7.144618944 7.626103595 7.45455711 7.721825013 7.437517522 182680297 mmoX Carbon cycling Methane Methane oxidation Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 7.481843423 7.562087015 7.540055007 7.358442799 7.164157224 7.155796175 7.139887935 7.153568933 115285423 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Burkholderia cepacia AMMD superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 6.860088135 7.184214336 157311379 Host_recognition_T2_type Bacteria phage HOST RECOGNITION/STRUCTURAL Enterobacteria phage Phi1 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.123657474 7.059495911 7.075076835 6.980020577 69301665 CopA Metal Resistance Copper Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.553882782 7.796966708 7.604271426 7.67535155 7.861991687 8.280435159 8.151531361 7.919510299 7.824794308 116208630 ara_fungi Carbon cycling Carbon degradation Hemicellulose Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 8.308099618 8.224546156 8.086145779 7.768096448 8.27091729 7.648080632 8.132276915 8.170845515 8.012378684 126708131 pstB Stress Phosphate limitation Sagittula stellata E-37 8.035637912 8.157756496 7.76208315 7.936192458 7.789057718 7.794608921 7.627831717 7.778570384 7.998494006 221322597 pstB Stress Phosphate limitation Bacillus subtilis subsp. subtilis str. SMY 7.772920087 7.669410949 7.782446144 7.582925388 7.789061038 7.99147343 7.707534497 7.183954208 7.520710408 9630472 major_capsid_protein Bacteria phage STRUCTURAL Enterobacteria phage N15 order:Caudovirales;family:Siphoviridae;genus:N15-like viruses; 7.900405383 7.826484168 7.858106576 7.12374398 7.731650562 7.713396591 7.578199148 7.781746519 7.432010846 140845139 PobA Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium glutamicum R superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 8.429719367 8.436411829 8.128635293 7.684318543 8.248772498 8.021437636 8.134176514 8.162958087 8.16412225 71083973 FTHFS Carbon cycling Acetogenesis Candidatus Pelagibacter ubique HTCC1062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales;genus:Candidatus Pelagibacter;species:Candidatus Pelagibacter ubique; 7.227517324 7.173601384 6.988040203 7.065944263 6.739968852 160362622 atzB Organic Remediation Herbicides related compound Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.00674545 8.14081597 7.816896536 8.2684206 8.044811974 7.97499787 7.559992405 8.296618028 88939655 nagK Organic Remediation Aromatics Aromatic carboxylic acid Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 7.861105436 7.856131505 7.634480791 7.742387696 7.927855289 8.122511012 7.935143544 7.899971628 8.105292091 13625834 gdh Nitrogen Ammonification Peptoniphilus harei superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Peptoniphilus; 8.016345832 8.040491873 7.884183484 7.688484589 7.405530255 8.100656942 7.595699438 7.738349799 7.48599592 23128178 mer Metal Resistance Mercury Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 7.078149876 7.059598636 7.431448405 6.757301366 6.870218393 7.383973456 151279886 pstA Stress Phosphate limitation Janthinobacterium sp. Marseille 7.239891493 7.204818142 14026667 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 7.863582824 7.973513669 7.394463237 7.459670866 7.816816399 7.700964195 7.523182027 7.895663153 156534357 pstS Stress Phosphate limitation Cronobacter sakazakii ATCC BAA-894 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 7.243969533 7.645974756 7.488024885 7.666675521 8.037489703 7.805162533 8.074540244 8.093363219 21106382 vanA Carbon cycling Carbon degradation Others Xanthomonas axonopodis pv. citri str. 306 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas axonopodis; 7.508714083 7.204173698 7.511740087 7.628731741 7.573112395 7.88909454 7.776089431 7.56551615 150956390 MFS_antibiotic Antibiotic resistance transporter Klebsiella pneumoniae subsp. pneumoniae MGH 78578 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 7.503464815 7.833619148 7.662165024 7.302998978 7.482651355 7.931311474 7.245597526 7.474754937 7.563998719 225022805 narH Stress Oxygen limitation Corynebacterium matruchotii ATCC 33806 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium matruchotii; 7.639351826 7.465000156 7.721404765 7.267903475 7.586602908 7.856687539 7.796720223 7.885942906 7.554378214 88926217 TerZ Metal Resistance Tellurium Desulfotomaculum reducens MI-1 7.208477792 6.964232608 82618401 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium 7.895737902 7.434991974 7.12024166 7.176963012 6.864564962 7.58422297 7.225475578 7.035897617 7.773539568 148239580 pstA Stress Phosphate limitation Synechococcus sp. WH 7803 7.356792533 7.44520571 6.813360094 7.298810282 7.154363415 7.568964134 7.217922869 86557094 pstB Stress Phosphate limitation Synechococcus sp. JA-2-3B'a(2-13) 7.72336551 7.715049216 7.388231877 7.185249194 7.436046115 7.64358821 7.372283278 7.45069985 7.653467084 151586590 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Halorubrum lacusprofundi ATCC 49239 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 7.530955353 7.788359977 7.394266308 7.411628432 7.214132643 19909601 gyrB other category gyrB Halomonas pacifica superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 6.89446579 7.309741614 121716531 pheA Organic Remediation Aromatics Other aromatics Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7.441499773 7.507304061 7.557996316 88797055 amyA Carbon cycling Carbon degradation Starch Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 7.12991685 7.377712061 7.366727834 7.291627504 7.129545147 7.699092989 7.22052068 7.040877227 7.188585974 261372073 SMR_antibiotics Antibiotic resistance transporter Fibrobacter succinogenes subsp. succinogenes S85 superkingdom:Bacteria;phylum:Fibrobacteres;class:Fibrobacteres;order:Fibrobacterales;family:Fibrobacteraceae;genus:Fibrobacter;species:Fibrobacter succinogenes; 7.006264036 6.964575589 206677651 glnA Stress Nitrogen limitation Rhodobacterales bacterium HTCC2083 7.286735147 7.278096074 6.909996834 7.230262762 7.489913078 260426688 fnr Stress Oxygen stress Citreicella sp. SE45 8.367508032 8.374164814 8.17513925 8.249835593 8.774930588 8.413625612 8.148928826 8.218645454 184197259 nitA Organic Remediation Aromatics Other aromatics Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.688781533 7.937960055 8.014895581 8.330956708 8.116302391 8.178958194 7.987184592 8.117023657 8.09755224 199594013 narG Nitrogen Denitrification uncultured bacterium 7.843177695 7.80800564 7.525948733 7.801809487 7.57389415 7.822986631 7.631744111 7.399760999 7.846218267 19914947 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Methanosarcina acetivorans C2A superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina acetivorans; 7.19645783 7.323245911 149927832 AceA Carbon cycling Carbon degradation others Limnobacter sp. MED105 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 7.758249493 7.472774696 7.235158917 7.739263231 71062241 alkK Organic Remediation Others Candidatus Pelagibacter ubique HTCC1062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales;genus:Candidatus Pelagibacter;species:Candidatus Pelagibacter ubique; 7.414574647 7.337192163 7.605838104 7.216471159 6.637435033 7.704961878 7.384473065 7.625969408 7.654871761 170124774 TerC Metal Resistance Tellurium Escherichia albertii TW07627 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 7.565615579 7.358065931 7.512971528 7.286162054 7.735633469 7.115936299 7.117479008 7.230967835 227549978 katE Stress Oxygen stress Corynebacterium lipophiloflavum DSM 44291 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium lipophiloflavum; 8.066804052 8.014223777 7.736319141 7.911891431 7.689336521 8.046688728 7.723697402 7.698519477 7.748684072 227977921 fnr Stress Oxygen stress Tsukamurella paurometabola DSM 20162 7.464262784 7.153781441 6.863388302 6.890262661 220928364 sigma_24 Stress Sigma factors Clostridium cellulolyticum H10 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium cellulolyticum; 7.255159489 7.208934588 6.97133396 189188192 lip Carbon cycling Carbon degradation Lignin Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7.229998803 7.406132595 7.368502421 7.534967315 7.322868376 7.790076369 7.650260468 7.812964015 117984805 mhpA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.957548354 7.654702545 7.467064116 6.980567231 7.343554758 7.588323647 7.208465924 7.308972473 7.323162486 214044780 pcaG Organic Remediation Aromatics Other aromatics Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.922757658 8.065455909 7.890547155 8.10529727 8.001245441 7.732058193 7.834003694 8.014549816 7.651348863 39933297 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.637652277 7.761101181 7.838527963 7.879357401 7.974496914 15966168 SMR_antibiotics Antibiotic resistance transporter Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 7.82472912 7.70227478 7.65889726 7.410104958 7.611034879 7.902937892 7.623507986 7.957665286 7.830931877 212529440 BpH Organic Remediation Aromatics Aromatic carboxylic acid Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.518839924 7.662999644 7.576546414 7.151231465 7.414509086 7.51760828 7.527526635 7.484677281 7.511851981 114539353 glnA Stress Nitrogen limitation Fulvimarina pelagi HTCC2506 7.481172555 7.146326108 7.464079296 6.957114319 7.376969904 7.796412378 7.642767782 7.311670802 69938612 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 7.724045432 8.184614027 7.470386852 7.536214172 7.896901378 7.685783418 7.796813253 7.47904367 7.874302183 117924837 pstC Stress Phosphate limitation Magnetococcus sp. MC-1 superkingdom:Bacteria;phylum:Proteobacteria;genus:Magnetococcus; 7.599750345 7.325435548 7.940974909 8.379866464 8.13527815 8.427064455 8.003726386 8.162510841 8.084021207 126179037 atzA Organic Remediation Herbicides related compound Methanoculleus marisnigri JR1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanoculleus;species:Methanoculleus marisnigri; 7.547048911 7.674467363 7.28131211 7.279608613 7.26061272 7.606684024 7.513690906 7.411761301 63257436 PobA Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 7.551262695 7.487414158 7.042103825 7.029057452 7.731002265 61394236 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.992556431 7.593947363 7.701573401 7.218617621 7.690144892 7.976343281 7.683927744 8.034324177 124389557 rubisco Carbon cycling Carbon fixation Halorhodospira abdelmalekii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira; 7.39619922 6.973697513 7.389424427 7.124754851 7.003213618 7.016403579 7.311383119 7.464972524 15722312 mer Metal Resistance Mercury Plasmid pSB102 7.435851176 7.465060916 7.218882115 7.267311128 7.277758947 7.638940321 7.396833839 7.317148024 15528433 merP Metal Resistance Mercury Acidithiobacillus ferrooxidans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus; 7.850648699 7.715497454 7.590124143 7.695853822 7.444327029 7.842657044 7.688473434 7.480224405 7.591910208 116205115 pheA Organic Remediation Aromatics Other aromatics Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 7.721773743 7.640677525 7.795244925 7.604355676 7.549954437 7.360178281 7.602883949 84712062 nagK Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 7.854593057 7.412125927 7.684185183 7.695993429 7.539009568 7.43957464 7.159619246 7.25454633 7.381435037 76876048 SMR_antibiotics Antibiotic resistance transporter Pseudoalteromonas haloplanktis TAC125 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas haloplanktis; 7.415322032 6.979360723 112803043 ppk Phosphorus Phosphorus utilization Campylobacter curvus 525.92 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter curvus; 8.103030136 8.032055627 7.752214349 7.741199337 8.035446365 8.018347763 8.008913372 7.988866143 8.027185802 83635095 trzN Organic Remediation Herbicides related compound Hahella chejuensis KCTC 2396 7.645187569 7.456305084 7.625390412 6.831515263 7.429924151 7.742979954 7.370087058 7.330279609 7.255796486 117575063 gyrB other category gyrB Candidatus Midichloria mitochondrii superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales;genus:Candidatus Midichloria; 7.648457605 8.055640499 7.202466092 7.608307706 8.006668357 7.794111178 8.037000283 220711542 nagI Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.488537128 8.303156316 8.055720257 8.064503062 8.538030394 8.53759352 8.340966937 8.527111155 8.845150938 169151977 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Acinetobacter baumannii 7.11399976 7.046474289 6.95024322 6.805493858 7.489871378 7.18259992 6.961118452 7.439732176 74038362 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.932582756 7.622614363 7.57835753 7.164543334 7.613746691 7.75091084 7.597093773 7.499840327 7.25886518 187928325 AceB Carbon cycling Carbon degradation others Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 7.883462036 7.955737634 8.167407824 7.916110739 7.435115576 7.754014217 164454534 mcrA Carbon cycling Methane Methane production uncultured archaeon superkingdom:Archaea; 7.200187262 7.236389382 6.72592162 7.450367213 151302360 APS_AprB Sulphur adenylylsulfate reductase Desulfotomaculum luciae superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 7.497662181 7.375941435 7.265416331 6.970669283 7.096307963 7.510111657 7.278098047 161506942 pstB Stress Phosphate limitation Lactobacillus helveticus DPC 4571 7.379571379 7.357225434 21673845 sox Sulphur Sulphur oxidation Chlorobium tepidum TLS superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 7.088857931 7.399261729 7.591426825 7.948665723 7.275714387 7.269043537 7.247897982 7.187047357 7.288919686 15887546 glnA Stress Nitrogen limitation Agrobacterium tumefaciens str. C58 7.345341999 7.227028111 7.408080809 6.972829374 7.084830109 7.701935726 7.380738151 7.231784875 7.489270167 160937652 ChrA Metal Resistance Chromium Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 7.418086542 7.288954608 7.369164503 7.167584412 7.613894046 7.502431579 7.514979286 7.204788142 7.372935009 78189844 sigma_24 Stress Sigma factors Chlorobium chlorochromatii CaD3 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium chlorochromatii; 7.746703313 7.567541594 6.821278362 7.449930054 188020044 ppx Phosphorus Phosphorus utilization Providencia stuartii ATCC 25827 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia stuartii; 7.23626958 7.063976798 7.19083745 7.117313386 7.312059655 196113848 CusA Metal Resistance Copper Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 7.388938871 7.001164116 6.630060173 7.326288298 27380049 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.830848899 7.640287714 7.89463819 7.965796382 7.965432688 8.096073132 8.068055346 7.938694358 7.724871254 269105269 pilin virulence pilin Photobacterium damselae subsp. damselae CIP 102761 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium damselae; 7.268582546 7.141638256 6.878340043 7.456869771 259907756 pstB Stress Phosphate limitation Erwinia pyrifoliae Ep1/96 7.51109757 7.26450136 7.040499782 7.44179037 7.85296335 253570795 katE Stress Oxygen stress Bacteroides sp. 1_1_6 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 7.176905255 7.10669707 7.030773242 120598319 cytochrome Energy process Energy process Shewanella sp. W3-18-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 7.157638105 7.246154418 7.142173495 6.872962114 7.226996518 120595004 nagI Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8.715239837 8.960761772 8.511252039 8.635589727 9.129914061 8.329444002 8.992057508 8.965823306 9.085231975 146410060 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.576079646 8.202455669 7.933346545 7.919162336 50982448 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 8.25636799 8.055259519 8.029814058 8.264078523 8.110083753 8.261634944 8.032697563 8.256709427 8.001001563 11493645 nifH Nitrogen Nitrogen fixation Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 7.69323078 7.599752242 7.587374761 7.461810583 7.367257263 7.715781082 7.499560766 7.32358342 7.580162773 254409639 pstS Stress Phosphate limitation Microcoleus chthonoplastes PCC 7420 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus chthonoplastes; 7.416380525 7.118108204 7.258669158 7.217221116 7.487605839 219537564 tutFDG Organic Remediation Aromatics BTEX and related aromatics Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 7.513215849 7.583282912 7.076613523 7.089940197 7.09730975 7.537677171 7.362139044 7.14573712 212684702 oxyR Stress Oxygen stress Providencia alcalifaciens DSM 30120 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 7.358551536 7.246130784 7.07282196 7.073236106 7.609298996 7.301876438 7.174344244 13249529 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.365579731 7.23001363 7.129813353 7.232253602 7.791647746 7.364865816 7.149937928 7.496295561 28868872 fnr Stress Oxygen stress Pseudomonas syringae pv. tomato str. DC3000 7.013433025 7.370100624 6.991459833 6.886346426 255279036 amyA Carbon cycling Carbon degradation Starch Geobacillus sp. Y4.1MC1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.406475727 7.345622857 7.204796365 7.207812115 7.520737376 7.615046896 7.360291727 7.026278553 7.366126282 221725628 nagG Organic Remediation Aromatics Aromatic carboxylic acid Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.018896571 7.714360503 7.355809646 8.04357921 7.824331228 7.705814325 7.741398624 5020009 GroES Stress Heat shock Rhodothermus marinus superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Rhodothermus; 7.266736667 7.210430258 168824139 B_lactamase_C Antibiotic resistance Beta-lactamases Aeromonas sp. HCUZ 2422275 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas; 7.49084297 7.461468502 7.956977772 7.651123299 7.322424499 8.110943495 7.111125842 7.237833982 118733968 ChrA Metal Resistance Chromium Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.023782799 7.745047909 7.477353105 7.695352719 7.994965202 8.306187105 7.996332466 7.754758599 7.869579754 260635459 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Prevotella sp. oral taxon 472 str. F0295 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella sp. oral taxon 472; 7.51576037 7.775954412 7.718881414 7.929359061 7.766335605 7.854736716 8.083564492 7.963163947 7.763865499 50839426 pstB Stress Phosphate limitation Propionibacterium acnes KPA171202 7.130411152 7.163431366 7.156999287 67936141 sox Sulphur Sulphur oxidation Chlorobium phaeobacteroides DSM 266 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 7.113658842 7.261959644 7.112584536 6.84497149 6.776148038 7.462215741 6.965664162 6.939052313 149809322 SMR_antibiotics Antibiotic resistance transporter Moritella sp. PE36 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Moritellaceae;genus:Moritella; 7.47591487 7.054588569 7.212663545 6.695827306 7.557517847 7.353168378 7.073445263 254512706 sigma_24 Stress Sigma factors Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 7.243803103 7.179138843 7.384089888 7.043500693 7.187510085 7.51045829 153877359 CadA Metal Resistance Cadmium Beggiatoa sp. PS superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Beggiatoa; 7.473553412 7.241084849 153211908 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 7.904511045 7.5547517 7.084339771 7.337656715 7.410284264 7.398379091 7.705430393 119391619 narG Nitrogen Denitrification uncultured bacterium 7.746467197 7.661702047 7.396057233 7.812567837 7.578409717 7.761676302 8.000639592 7.980242504 85714059 grpE Stress Heat shock Nitrobacter sp. Nb-311A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter; 7.378753759 7.734928968 7.130739724 7.448032754 7.415791478 7.912660894 7.357772801 7.510639007 7.423003342 126730770 proV Stress Osmotic stress Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 7.737622447 7.54416105 7.718745445 7.109837023 7.711145562 7.540234945 7.758823821 7.665485614 153870652 CopA Metal Resistance Copper Beggiatoa sp. PS superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Beggiatoa; 6.908716234 7.014635198 6.69399498 7.407529482 212559304 pstB Stress Phosphate limitation Shewanella piezotolerans WP3 7.829135839 7.80677663 7.504085671 7.508486592 7.452993724 8.092742908 7.271279217 7.451486818 90334983 hly virulence hemolysin Aurantimonas manganoxydans SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 8.387176942 7.564643105 7.675448375 7.553373925 8.026472215 7.945598414 7.991442516 7.538481396 7.557961899 84375881 TerC Metal Resistance Tellurium Vibrio splendidus 12B01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 7.277985214 7.336385585 666867 pulA Carbon cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Caldicellulosiruptor; 7.210951152 7.280763878 7.360155843 7.219116604 7.236433269 7.831036087 91775105 grpE Stress Heat shock Methylobacillus flagellatus KT superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 7.205681697 7.358366733 6.978001238 6.905521712 115253712 rubisco Carbon cycling Carbon fixation Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.509431675 7.867911199 8.165221736 8.144403167 7.891814675 8.118403956 7.906479046 213536817 exoglucanase Carbon cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.214266928 7.426966623 7.383803294 6.636266496 6.809008786 7.748406651 7.195871167 6.809746685 70930911 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.904443825 7.680274087 7.896744038 8.052723709 8.14577849 8.435076264 8.043596852 7.798082918 77961783 CadA Metal Resistance Cadmium Yersinia mollaretii ATCC 43969 7.75188015 7.42653284 7.70331086 7.722107061 7.499369403 7.801660472 7.645568945 7.42748537 7.77749825 127511210 cytochrome Energy process Energy process Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 7.650523219 7.341453333 7.24253428 7.309908909 7.7302479 8.067739271 7.781181898 7.391392742 7.486786677 164509939 APS_AprA Sulphur adenylylsulfate reductase Mytilidae sp. morphotype BC 1007 gill symbiont 7.372750898 7.100557829 7.010150952 6.69433444 7.532537758 262334702 sigma_24 Stress Sigma factors Rhodothermus marinus DSM 4252 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 7.675974513 7.461852652 7.479664233 6.871778567 7.635718264 7.446172368 7.580755354 7.197644625 7.441039818 238712004 fnr Stress Oxygen stress Yersinia rohdei ATCC 43380 8.048643417 7.831203907 7.410551596 7.541676273 7.586390083 7.779370262 7.752509703 7.455247237 7.440338511 89094249 sigma_70 Stress Sigma factors Oceanospirillum sp. MED92 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Neptuniibacter; 7.106844723 6.670857117 212635911 pimF Organic Remediation Aromatics Aromatic carboxylic acid Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 8.027192221 7.943892262 7.971841723 7.802487838 7.688743458 7.991376368 1707780 glycosyl_transferase_EPS Bioleaching EPS Sulfolobus solfataricus 7.069200639 7.653889997 6.922043071 6.961370495 125996759 AceB Carbon cycling Carbon degradation others Shewanella baltica OS155 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 7.485901563 7.17736766 7.730341339 7.490147895 7.74721764 48995940 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. BAV1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.393706994 7.688597962 7.507692617 7.357020508 7.473588583 7.640457122 7.827338396 7.47447026 56421757 ArsC Metal Resistance Arsenic Geobacillus kaustophilus HTA426 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus kaustophilus; 8.255993523 8.382074665 8.215788443 7.416814747 8.269744129 7.837931195 8.113884353 8.196669601 33391331 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.469212293 7.750186724 7.795031174 7.680364453 7.837614066 7.818316756 8.138093693 8.036133044 7.954751876 207087470 alkK Organic Remediation Others beta proteobacterium KB13 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 7.819957666 7.492724858 8.214849168 8.020713351 8.004974269 8.676015133 8.488937173 8.278086565 790698 exoglucanase Carbon cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas; 8.231441151 7.802548328 7.708061323 7.814148766 7.79284055 7.604932509 8.068988725 121720054 pheA Organic Remediation Aromatics Other aromatics Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 8.032176118 8.257547754 7.775370775 7.573187081 8.286800595 7.965576949 7.984785075 7.442259989 7.93513359 145635386 sigma_70 Stress Sigma factors Haemophilus influenzae PittAA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus influenzae; 7.159277937 7.040513798 7.281996574 6.968954878 6.6684441 7.578446839 7.316819125 7.132956702 7.425662046 15074007 ArsC Metal Resistance Arsenic Sinorhizobium meliloti superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium; 7.803291959 7.978813031 7.856703804 7.553601185 7.95696087 7.998428109 7.796705488 7.375084861 109452512 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6.959200299 7.134468214 58983238 nmoA Organic Remediation Aromatics Nitoaromatics Mycobacterium phlei superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.669281705 7.163960845 7.281341915 7.242369308 7.233792124 7.523112692 7.197436441 91693077 napA Nitrogen Dissimilatory N reduction Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.298983448 6.759306007 7.129284012 7672529 xylF Organic Remediation Aromatics BTEX and related aromatics Geobacillus thermoglucosidasius superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.327150197 7.089264636 7.365423814 7.052833953 13195098 dsrB Sulphur sulfite reductase Desulfotomaculum acetoxidans superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 7.539435022 7.20671492 7.564782533 6.928927761 7.084133745 7.692321809 254449115 sigma_32 Stress Sigma factors gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.128387936 7.156406808 7.258219864 7.152415123 7.087534016 261345808 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 8.051199191 8.03777108 8.258262273 7.237068944 8.205856246 8.176841845 7.891396187 8.069643447 7.359157457 186467913 fnr Stress Oxygen stress Nostoc punctiforme PCC 73102 7.368265192 6.969546935 260937297 sigma_24 Stress Sigma factors Vibrio orientalis CIP 102891 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 7.792564529 7.405819176 6.882611801 7.378840401 171779914 sigma_70 Stress Sigma factors Streptococcus infantarius subsp. infantarius ATCC BAA-102 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus infantarius; 8.192887617 8.189934004 8.040685303 8.011660624 8.578818061 8.005999204 8.174280653 8.050498027 8.514628964 91775236 SMR_antibiotics Antibiotic resistance transporter Methylobacillus flagellatus KT superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 7.569255299 7.706655288 7.656544613 7.925404275 8.12935041 8.040088492 8.335369447 8.188716533 8.030360617 71848365 sox Sulphur Sulphur oxidation Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 7.858965817 7.534108365 7.543381255 7.455319153 7.194666442 7.982232168 7.353158498 7.31059509 7.401940066 94309274 ArsC Metal Resistance Arsenic Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 7.068812445 7.255534339 51291735 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.266880768 7.130380401 7.384646183 7.002261979 7.06502588 7.194667647 7.519959239 118666265 mhpA Organic Remediation Aromatics Aromatic carboxylic acid Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.948364788 8.643968303 8.364287855 8.252816204 8.454442622 8.310609247 8.123678625 8.145510849 154162362 Catechol Organic Remediation Aromatics Other aromatics Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 7.535868474 7.941206512 7.979804759 7.586353252 161505615 pstS Stress Phosphate limitation "Salmonella enterica subsp. arizonae serovar 62:z4,z23:--" superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 6.944264351 7.11089358 116180516 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 7.68932101 7.557826441 7.406739758 7.391220195 7.718495047 148243637 heavy_metal Bioleaching Metal Resistance Acidiphilium cryptum JF-5 7.497574641 7.680099696 7.446170657 7.7171329 226245610 pstS Stress Phosphate limitation Rhodococcus opacus B4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 7.589383028 7.713323509 7.586404043 7.761965456 7.316067632 7.642511739 146406458 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.671951257 7.189271708 7.460438537 7.394808065 7.180228824 7.998156398 7.320311135 7.448434578 109290151 UvsW Bacteria phage REPLICATION Aeromonas phage 25 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.435652737 7.089643337 83943471 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 7.595222066 7.401296164 7.71032777 7.55379528 7.803458426 7.962569378 7.523537593 8.016640757 7.528501328 119391555 narG Nitrogen Denitrification uncultured bacterium 7.938837825 7.792763042 8.16379493 8.327772701 8.221966212 8.423718526 7.816424498 8.144897425 7.976614477 84497746 pimF Organic Remediation Aromatics Aromatic carboxylic acid Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 7.24746863 7.367785421 7.540803944 7.402347134 7.73641417 7.745534121 7.694914822 109452404 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.606079423 7.869585354 7.33932782 7.736545968 7.628600774 7.316354693 7.544465543 158439721 ChrA Metal Resistance Chromium Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 7.917462779 7.893847761 7.919788548 8.310686757 8.51804777 8.579250765 8.226070107 7.740301966 8.451903219 15963877 CadA Metal Resistance Cadmium Sinorhizobium meliloti 1021 7.08194616 7.165889737 7.774936502 7.335877033 8.160112481 7.75536896 7.882621383 212558354 cytochrome Energy process Energy process Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 7.357126924 7.190063385 194537769 ppx Phosphorus Phosphorus utilization Vibrio cholerae V51 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 7.093087498 7.376463028 7.37527209 7.231622792 7.185578036 7.46581545 7.17193066 7.489278376 8.145153183 239996945 xylA Carbon cycling Carbon degradation Hemicellulose Alteromonas macleodii ATCC 27126 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 7.709554984 7.334084923 7.466986868 7.424635759 8.046777929 7.475885016 7.458119798 218780390 pcc Carbon cycling Carbon fixation Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 7.635373547 7.304041526 7.444557627 7.629804598 7.331565221 7.084016865 7.890459209 7.567674085 160897232 xylJ Organic Remediation Aromatics BTEX and related aromatics Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.603642161 7.764294734 7.498407396 7.270237901 7.360196644 7.89681204 7.561478364 7.339194571 7.382645556 257780576 glnA Stress Nitrogen limitation Desulfotomaculum acetoxidans DSM 771 7.680624157 7.582675121 7.748948181 7.642146925 7.66476179 7.902527657 7.736466186 7.623568445 7.892873702 224801785 sigma_24 Stress Sigma factors Opitutaceae bacterium TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 7.259321113 7.199140504 7.051299099 7.133293255 7.315487106 116670618 TerC Metal Resistance Tellurium Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.418986735 7.13802023 7.036489238 33865553 fnr Stress Oxygen stress Synechococcus sp. WH 8102 7.833121755 7.905420933 7.537603299 8.000247162 7.975881607 8.152050948 8.132108825 8.31918203 8.034235329 147677913 CODH Carbon cycling Carbon fixation Pelotomaculum thermopropionicum SI superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Pelotomaculum;species:Pelotomaculum thermopropionicum; 7.41957149 7.844315469 7.648446988 7.519477864 7.590066638 7.79154133 7.514581905 120867521 TerC Metal Resistance Tellurium Neisseria meningitidis FAM18 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria meningitidis; 7.604459306 7.445735421 7.289566643 7.442302735 7.800819463 7.860068399 7.823835599 7.674631967 7.499355201 112464171 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.345579196 8.200853572 8.06229928 8.005015093 8.209851078 8.053433573 8.265632369 8.082298083 8.289049935 210159008 sigma_70 Stress Sigma factors Collinsella stercoris DSM 13279 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella stercoris; 7.865986565 7.657918135 7.526117458 7.124136836 7.191044648 7.827109446 148654064 pstB Stress Phosphate limitation Psychrobacter sp. PRwf-1 7.558974568 7.156592096 7.471061318 6.947828307 7.628072954 154088927 ChrA Metal Resistance Chromium Parabacteroides merdae ATCC 43184 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides merdae; 7.391305656 7.38675254 7.699574518 7.562593264 7.157347605 7.894270585 7.071998035 7.165165852 151302337 APS_AprB Sulphur adenylylsulfate reductase Desulforhabdus sp. DDT superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Desulforhabdus; 8.070893639 7.820329553 7.688622446 7.625781203 7.603865092 8.074673176 7.803626677 7.246577964 7.478027946 195537259 gyrB other category gyrB Glaciibacter superstes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Glaciibacter; 7.231827727 7.444018675 7.371594222 7.009837349 149199675 gyrB other category gyrB Lentisphaera araneosa HTCC2155 superkingdom:Bacteria;phylum:Lentisphaerae;order:Lentisphaerales;family:Lentisphaeraceae;genus:Lentisphaera;species:Lentisphaera araneosa; 7.765614493 7.794726517 7.577486513 7.22522023 7.665461665 7.709807688 7.598915965 7.33526233 7.471637256 121590422 nitA Organic Remediation Aromatics Other aromatics Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 8.5032447 7.723731978 7.739009232 8.237027851 8.175076462 8.108192195 7.694778563 7.667038375 167648224 sigma_24 Stress Sigma factors Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 7.242202987 7.065034785 7.045739321 7.050931304 7.008138009 111606646 Host_recognition_T4_type Bacteria phage HOST RECOGNITION/STRUCTURAL Klebsiella phage KPP95 7.484881236 7.356786293 6.905337741 7.501227525 118750316 Catechol Organic Remediation Aromatics Other aromatics Marinomonas sp. MWYL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 7.526825538 7.310031605 7.129940895 7.153593119 7.62292248 7.453107895 7.206035711 227514984 narI Stress Oxygen limitation Lactobacillus fermentum ATCC 14931 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus fermentum; 7.683001933 7.651289821 7.47342499 7.125568689 7.305182542 7.561857974 7.819378293 7.570788995 7.877436812 148570347 pstB Stress Phosphate limitation Roseiflexus sp. RS-1 7.21509721 7.238324341 7.345295727 6.880702295 7.402622625 7.738891509 7.371152054 7.371193517 7.502464304 84713196 Catechol Organic Remediation Aromatics Other aromatics Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 7.241241002 7.442871213 7.30254409 6.852940007 7.190576541 194012922 CopA Metal Resistance Copper Bacillus pumilus ATCC 7061 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pumilus; 7.220331162 7.188219894 6.967542054 6.722547318 7.404589873 206969029 Tet Antibiotic resistance other Bacillus cereus AH1134 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 7.871966775 7.540514003 7.632751666 7.428480691 7.705402683 84389153 sigma_70 Stress Sigma factors Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 7.671197281 7.624672183 7.437530504 7.181245207 7.502369923 7.491242654 7.355483508 7.712320065 7.424229045 209486519 mcrA Carbon cycling Methane Methane production uncultured archaeon superkingdom:Archaea; 7.272228888 7.098537643 7.261166782 159175681 katE Stress Oxygen stress Vibrio sp. AND4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.729477223 6.992230028 161330108 obgE Stress Radiation stress Shewanella benthica KT99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella benthica; 7.145968579 7.148326252 7.148297498 6.761972136 7.270492876 163741763 phn Organic Remediation Herbicides related compound Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 7.48692505 7.28397019 7.130911561 6.791943153 7.124270233 7.478892026 7.114135486 7.37764676 33391409 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.100575411 7.622587791 7.617716637 7.641758284 7.695668841 7.587890243 7.398951146 7.571764571 160939862 bglP Stress Glucose limitation Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 7.823554986 7.612954403 7.502648542 7.476895866 7.972390337 7.945667179 7.691590388 7.493523985 7.625721111 281333997 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 7.461240753 7.854992313 7.477096649 7.281611459 7.738370915 7.975702313 7.719050086 7.475493077 7.270766042 229611195 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.581540614 7.394914528 7.406429389 7.623529479 7.773550843 7.907953078 7.754248746 7.436414347 7.256775798 55378686 amyA Carbon cycling Carbon degradation Starch Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 8.409427986 7.537577067 7.512270598 8.130607857 8.013806251 8.265911208 8.271817382 7.493554227 110283401 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 7.706661796 7.524382487 7.666131398 7.400418743 7.721185975 7.485899595 7.606847158 7.671101283 119226142 gyrB other category gyrB Arthrobacter globiformis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.542412656 7.59529696 7.887831474 7.57149122 7.750327101 7.789889636 7.702014666 7.557717961 7.57472969 217978470 hrcA Stress Heat shock Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 7.551157266 7.581945147 7.784225336 7.489845935 7.703445684 7.837841912 7.582037344 7.633844786 119670672 akbD Organic Remediation Aromatics BTEX and related aromatics Azoarcus sp. BH72 8.058537422 7.371231779 7.435679807 7.520483697 7.739435674 7.591628478 7.242303103 7.437299271 7.263039086 71845800 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 7.761530153 7.91363926 7.759767103 7.619473312 8.251310249 8.109459324 8.186046673 8.226133453 7.991925958 170937912 fnr Stress Oxygen stress Cupriavidus taiwanensis 7.908090628 7.924305402 7.727170152 8.014601427 7.951605316 8.126550611 8.08890145 116329429 phoB Stress Phosphate limitation Leptospira borgpetersenii serovar Hardjo-bovis L550 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira borgpetersenii; 7.515562217 7.492763071 82411423 grpE Stress Heat shock Nitrosospira multiformis ATCC 25196 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira;species:Nitrosospira multiformis; 7.491868778 7.752316162 7.654591748 7.509897098 7.539267028 7.625451327 7.859856318 4633564 nosZ Nitrogen Denitrification uncultured bacterium ProH superkingdom:Bacteria; 7.440944818 7.314631867 7.427667989 7.255360539 7.744639605 7.127403163 7.318093317 29466032 norB Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.12777467 7.693548492 7.472662658 8.096712334 7.902156388 8.004379201 7.939927803 7.763893497 86169521 dnaK Stress Heat shock Weissella confusa 7.260845574 7.033425849 159889966 sigma_24 Stress Sigma factors Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 7.238792244 7.152581774 7.06927531 6.975198538 7.173184476 7.384863964 113529747 ChrA Metal Resistance Chromium Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 7.66765006 7.809367052 7.677204407 7.612392118 7.938504519 8.08368466 7.984659265 7.293069192 7.940300462 261250633 amyA Carbon cycling Carbon degradation Starch Vibrio orientalis CIP 102891 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 7.670554202 7.740675452 110592129 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Cordyceps bassiana superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Cordycipitaceae;genus:Cordyceps; 7.787952237 7.433248828 7.451535588 7.783607585 7.535811517 7.904892509 7.667594053 7.604172526 7.369405659 238797865 pstC Stress Phosphate limitation Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 7.060111599 7.003666388 7.226964025 3378406 mdlD Organic Remediation Aromatics Other aromatics Novosphingobium aromaticivorans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 8.601664493 8.438529356 8.232860425 8.475624338 8.315013244 8.29850421 8.370250741 8.336670866 8.29111281 89319499 CopA Metal Resistance Copper Mycobacterium flavescens PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 7.775155712 7.781029154 7.839624943 7.142000242 7.482882894 8.070027014 7.462989752 7.297276071 7.330403604 159876039 sigma_24 Stress Sigma factors Flavobacteriales bacterium ALC-1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales; 7.157352966 6.989871324 121605010 benD Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 7.953856598 8.17194055 7.880600263 7.614550258 8.040610561 8.102544686 7.907828055 7.792626468 238715146 B_lactamase_C Antibiotic resistance Beta-lactamases Yersinia bercovieri ATCC 43970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 7.617760057 8.075522349 8.084336548 8.091052944 8.314730747 8.419371158 8.26457152 8.220532751 8.237715764 50542708 rubisco Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.655383104 7.443571847 7.503964978 6.986686368 7.439474822 7.757005471 7.586597922 7.092865753 7.478803444 149180726 AceB Carbon cycling Carbon degradation others Bacillus sp. SG-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.467667487 7.677997177 7.32267003 7.230524739 7.694423065 8.00146427 7.870524852 7.830717325 7.841602049 258526098 dsrA Sulphur sulfite reductase Desulfurivibrio alkaliphilus AHT2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfurivibrio;species:Desulfurivibrio alkaliphilus; 9.11029217 8.487802967 8.712996335 8.101193367 8.630455165 7.961161748 8.373070305 8.56523325 7.941216541 86569801 pstC Stress Phosphate limitation Frankia sp. CcI3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 7.849451658 7.951277393 7.765187918 7.427488746 7.85613014 7.922643489 8.270374094 8.043996981 7.575729884 68447298 katE Stress Oxygen stress Staphylococcus haemolyticus JCSC1435 7.463743739 7.161685303 7.267239524 6.744508051 7.506112813 7.035584684 7.276118345 49642715 katE Stress Oxygen stress Kluyveromyces lactis superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Kluyveromyces; 7.357507657 7.260531989 7.019772846 7.461991406 7.172438274 6.715093928 7.440842874 213536661 exoglucanase Carbon cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.483346386 7.664405906 7.462917688 6.802924608 7.417333983 7.707666118 7.632315812 7.618607059 7.508843598 23821232 mer Metal Resistance Mercury Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.389834785 7.6628857 7.793762379 7.617250299 7.507985613 7.904399281 7.846360347 7.861688194 7.934462952 238762144 nrfA Nitrogen Dissimilatory N reduction Yersinia kristensenii ATCC 33638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia kristensenii; 7.400981397 7.395237017 7.732713447 119855819 ureC Nitrogen Ammonification Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.888255474 7.74782887 7.719314954 7.641457748 8.04927379 8.187557288 7.934294528 7.946544918 7.807981166 167900205 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Burkholderia pseudomallei 7894 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 7.357794802 7.316100091 6.925107996 7.309618926 7.090881152 119951370 katE Stress Oxygen stress Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 7.852716346 8.114965702 7.87949356 7.608872966 8.203633164 8.072876084 8.291758874 8.112290982 8.155212519 86571263 iro virulence Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.036646817 8.168304635 7.335174511 7.274740297 7.999486834 7.589009284 7.608415226 7.37877357 7.955444883 91683673 nhh Organic Remediation Aromatics Nitoaromatics Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.727086911 7.821474283 8.072821262 7.737783315 8.185659328 7.710048001 7.73257275 7.788944731 83633638 ChrA Metal Resistance Chromium Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 7.109264525 7.374502745 7.816411577 7.012229769 7.652178053 7.594152429 7.071292385 227405591 ABC_antibiotic_transporter Antibiotic resistance transporter Geodermatophilus obscurus DSM 43160 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Geodermatophilus;species:Geodermatophilus obscurus; 7.775554194 7.613183074 7.512211627 7.459062232 8.177302662 8.164543405 8.058989443 8.125853385 157144341 gyrB other category gyrB Citrobacter koseri ATCC BAA-895 7.317875623 7.175961772 7.250172423 6.769072369 7.00224511 89517267 hly virulence hemolysin Flavobacteria bacterium BBFL7 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria; 6.949518489 7.035375231 7.166124067 9106350 sigma_70 Stress Sigma factors Xylella fastidiosa 9a5c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xylella;species:Xylella fastidiosa; 7.764182937 7.391535611 7.355099773 7.302812995 157324576 fnr Stress Oxygen stress Serratia proteamaculans 568 7.298323726 7.628747518 7.134835601 6.954167395 6.615663985 7.496077955 104304111 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7.446013591 7.183112322 7.039709573 4105709 bphA Organic Remediation Aromatics Polycyclic aromatics Pseudomonas fluorescens 8.10080936 7.856184843 6.763368337 7.847546034 7.813508284 8.256342057 7.575275881 7.47540261 262201500 limEH Carbon cycling Carbon degradation Others Gordonia bronchialis DSM 43247 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 7.894676907 7.968901386 7.730843261 7.875268835 7.818485838 8.010148319 7.896710614 8.170256977 7.774629623 46200009 FTHFS Carbon cycling Acetogenesis Thermus thermophilus HB27 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 7.40580604 7.625282613 7.098063702 7.57127849 145701420 pimF Organic Remediation Aromatics Aromatic carboxylic acid Metallosphaera sedula DSM 5348 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Metallosphaera;species:Metallosphaera sedula; 7.319810074 7.204059349 133738856 Arylest Organic Remediation Aromatics Other aromatics Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 7.303581772 7.386341047 6.689277959 7.430092502 255010652 cap virulence capsule Bacteroides fragilis 3_1_12 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 7.521946452 8.10302339 8.043284572 7.976415628 8.088218307 7.846338799 8.100309283 8.245762583 8.126590901 90569466 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.329948422 7.501682465 7.305950624 7.5697577 7.455636158 7.413450835 7.359732306 270153807 sigma_70 Stress Sigma factors Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.008106029 7.151160532 7.390284773 6.860040792 6.732055918 7.433961889 261605665 vip virulence virulence protein Pectobacterium wasabiae WPP163 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium wasabiae; 7.108969376 7.799452265 7.16008227 7.288852141 163850052 sigma_70 Stress Sigma factors Methylobacterium extorquens PA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 7.791316616 7.827492266 7.467764915 7.578146603 7.89668832 7.97008064 8.017688805 7.474950566 8.011805529 222119471 ahpF Stress Oxygen stress Macrococcus caseolyticus JCSC5402 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Macrococcus;species:Macrococcus caseolyticus; 7.365224211 7.331304951 7.157431845 6.789222383 7.524129926 38199369 narJ Stress Oxygen limitation Corynebacterium diphtheriae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium; 7.428141754 7.165041024 7.142822243 152981018 nitro Organic Remediation Others Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 8.109059849 8.184269351 7.864176603 7.427961194 7.816757897 7.681265784 7.792897543 7.439302206 7.998497061 229556039 srt virulence surface protein Listeria grayi DSM 20601 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria grayi; 7.231676507 7.300009035 126436789 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.088831119 7.878961184 7.489491408 7.777019838 8.421015692 8.338017396 8.157029147 8.388508336 8.238718803 223553581 ChrA Metal Resistance Chromium Tolumonas auensis DSM 9187 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Tolumonas;species:Tolumonas auensis; 6.959850038 7.30712859 6.814993092 7.626721246 177840789 xylA Carbon cycling Carbon degradation Hemicellulose Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 6.945343602 7.034104401 218548205 pimF Organic Remediation Aromatics Aromatic carboxylic acid Escherichia fergusonii ATCC 35469 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia fergusonii; 6.942587374 6.792069604 6.664068214 7.263932382 52629244 pilin virulence pilin Legionella pneumophila subsp. pneumophila str. Philadelphia 1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella;species:Legionella pneumophila; 7.983889002 7.852008088 7.74522893 7.60261796 8.244790619 7.944748173 7.762370936 8.269756038 149204416 sox Sulphur Sulphur oxidation Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.66879902 7.628746707 7.998906765 7.772928689 8.092959849 8.247807852 7.88765666 8.017731087 4588030 merB Metal Resistance Mercury Bacillus sp. RC607 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 8.311979702 8.144230544 7.97091127 7.722902728 8.176250312 7.892514154 7.967697274 7.748831156 77459695 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.606220439 7.425753756 7.358845548 7.303888512 7.642162647 261879166 phoB Stress Phosphate limitation Prevotella bergensis DSM 17361 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bergensis; 7.33840603 7.559744382 7.255546493 6.838786509 7.124010598 161622606 scaffold Bacteria phage STRUCTURAL Enterobacteria phage JS98 order:Caudovirales;family:Myoviridae;genus:T4-like viruses;species:Enterobacteria phage JS; 7.073268088 6.523449175 124549809 ArsC Metal Resistance Arsenic Shewanella putrefaciens 200 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella putrefaciens; 7.244158823 7.182236972 7.541271274 7.516340109 7.148647751 7.993848892 7.404761993 7.396046623 7.726524468 113374908 ara Carbon cycling Carbon degradation Hemicellulose Geobacillus caldoxylosilyticus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.219238253 7.17661933 7.087656225 6.961519207 7.425887433 218551613 HBH Organic Remediation Aromatics BTEX and related aromatics Escherichia fergusonii ATCC 35469 6.785016968 7.315714815 89051529 Arylest Organic Remediation Aromatics Other aromatics Photobacterium sp. SKA34 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium; 7.171833815 6.896673182 7.243205169 6.761010414 6.756726448 7.571025181 84685151 oxyR Stress Oxygen stress Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.673059203 7.465795171 7.263332146 7.452315324 7.610475129 7.46608267 7.41772789 156528474 exochitinase Carbon cycling Carbon degradation Chitin Vibrio harveyi ATCC BAA-1116 7.0552126 7.028208886 6.926905174 119391563 narG Nitrogen Denitrification uncultured bacterium 8.418953077 8.230043499 7.80779901 8.291707262 7.910622658 7.97810346 8.088494109 8.428694771 149950748 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Alkaliphilus metalliredigens QYMF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus metalliredigens; 7.057206854 7.060367249 157094731 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 6.731496893 7.206446261 7.189262581 7.115509589 6.652596447 7.348834165 7.119712219 7.090013843 7.438630745 227181813 ureC Nitrogen Ammonification Corynebacterium glucuronolyticum ATCC 51866 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glucuronolyticum; 7.609654809 7.574293588 6.986803193 7.513701997 7.644850675 7.519448577 7.34956981 7.704853729 147886280 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 7.386106616 7.527830817 7.573089608 7.561726854 7.171717432 7.543502113 7.805639737 90104162 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.978899165 7.636016788 7.875625233 7.768877536 91774818 AmiE Organic Remediation Aromatics Other aromatics Methylobacillus flagellatus KT superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 8.000054012 7.682164913 7.990692144 7.84416367 7.567176227 7.971788342 7.356552759 7.517713426 7.415265851 146326149 sox Sulphur Sulphur oxidation Candidatus Vesicomyosocius okutanii HA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:Calyptogena okutanii thioautotrophic gill symbiont; 7.711016351 7.768808252 8.251959371 8.02688215 8.021624447 7.329620078 163801351 proV Stress Osmotic stress Vibrio sp. AND4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.339774656 7.017271491 7.420845124 7.168287548 6.852351439 7.579088777 7.451511323 7.422507154 7.510537188 152980420 iro virulence Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 8.898494164 8.512019251 8.234943899 7.962719484 8.636302204 8.162890916 8.250865503 22777772 xylanase Carbon cycling Carbon degradation Hemicellulose Oceanobacillus iheyensis HTE831 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Oceanobacillus;species:Oceanobacillus iheyensis; 7.390461531 7.539127941 7.199843694 7.228875418 7.17494968 7.596480277 119501509 tfdA Organic Remediation Aromatics Chlorinated aromatics Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 7.290675429 6.861880657 7.072623968 7.71704004 7.348959719 7.017284319 6.931835015 134095947 obgE Stress Radiation stress Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 7.162313801 7.365687938 7.360672099 7.130940274 7.448966371 7.618562816 7.552540596 15157795 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.207926051 7.47882305 7.323331464 7.231714238 6.980427379 7.473383832 7.340478045 7.502489565 7.853868864 227089116 xylA Carbon cycling Carbon degradation Hemicellulose Lactobacillus hilgardii ATCC 8290 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus hilgardii; 7.19671468 7.091931784 7.292052483 6.864633636 7.627387093 6.991777493 7.025487608 270507054 sigma_70 Stress Sigma factors Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 7.586265923 7.475971555 7.575396576 7.253615213 7.808672958 8.006933928 7.333147047 7.295050216 121704940 exochitinase Carbon cycling Carbon degradation Chitin Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7.639613037 7.866139211 7.542098117 7.733563671 7.59635452 7.640664407 7.516318953 7.658393567 7.408560486 46399625 gyrB other category gyrB Parachlamydia sp. UWE25 superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Parachlamydiaceae;genus:Candidatus Protochlamydia;species:Candidatus Protochlamydia amoebophila; 7.472506745 7.544229445 7.438335271 260865102 APS_AprB Sulphur adenylylsulfate reductase Ammonifex degensii KC4 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Ammonifex;species:Ammonifex degensii; 7.276151133 7.662918549 7.321281074 7.011495458 7.674962446 7.347371989 7.479445779 7.293807855 122087761 obgE Stress Radiation stress Yersinia enterocolitica subsp. enterocolitica 8081 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 7.506107524 7.696063631 7.453361975 7.43544277 7.586300054 7.473192777 7.640897903 7.483489282 7.540735728 89512878 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.356465479 7.271709235 7.002153525 7.065155685 7.047526744 114341659 pimF Organic Remediation Aromatics Aromatic carboxylic acid Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 7.393138975 8.039359474 7.694139996 7.752849617 8.018116968 7.782360147 7.742752516 7.738839338 158108093 hly virulence hemolysin Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.470894023 8.35566639 8.315976043 8.466674979 8.168820712 8.377436888 8.209514878 8.676416368 225851211 phoB Stress Phosphate limitation Persephonella marina EX-H1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Hydrogenothermaceae;genus:Persephonella;species:Persephonella marina; 7.433572804 7.010850002 118465446 CDH Carbon cycling Carbon degradation Cellulose Mycobacterium avium 104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 7.57081276 7.458346451 7.422342048 7.482055353 7.162845281 7.785525883 7.40779666 7.178865805 91682473 bco Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9.881582493 9.734071082 9.611541277 9.761854628 10.06955026 9.949253567 15673698 pstB Stress Phosphate limitation Lactococcus lactis subsp. lactis Il1403 7.247841211 7.295931715 163734849 dmsA Organic Remediation Others Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 7.599830762 7.618672732 7.691021526 7.773270809 7.511238471 198284036 phn Organic Remediation Herbicides related compound Acidithiobacillus ferrooxidans ATCC 53993 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 7.666479615 7.723768916 7.521851029 7.612923168 7.784139362 8.141731718 7.647998595 7.695725224 7.733979395 219849569 CopA Metal Resistance Copper Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 7.452552169 7.537159828 7.730669649 7.390749223 7.944192918 7.803211427 7.59670495 7.51257944 7.709758842 63081886 nosZ Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 7.267775344 7.356805198 7.490553568 7.353626426 7.190108215 7.851429429 209516491 phtA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.65606273 8.057496342 7.712141716 8.290663505 8.067016799 8.265159848 157846853 hydrogenase Energy process Energy process Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 7.569866194 7.453659451 7.202673009 7.19547402 7.371474275 7.665082705 7.378106487 7.169251734 7.575299531 254556421 narH Stress Oxygen limitation Lactobacillus plantarum JDM1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus plantarum; 7.216995327 7.375587105 7.508244486 7.536647611 7.989091199 7.412602649 7.253877504 7.447023836 83404778 nirS Nitrogen Denitrification uncultured organism 7.741430833 7.730032107 7.847305401 7.338508249 7.950602968 7.832779745 7.953043198 8.090252014 7.770097055 237846175 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.330934702 7.367705409 7.220606025 6.907443603 7.234909592 7.674084296 7.30146658 7.420117045 7.450096447 27378560 linC Organic Remediation Pesticides related compound Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.673098417 7.674151393 7.270133734 7.390788201 7.426131045 7.895257844 7.430230951 7.26380088 7.329915653 254255208 MFS_antibiotic Antibiotic resistance transporter Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 7.2142457 7.46414495 7.186768959 7.447938745 7.432249745 7.227963303 149912689 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.22713665 7.524515528 7.290476306 7.209876042 7.492768534 146320957 pstB Stress Phosphate limitation Streptococcus suis 98HAH33 7.037817442 7.150760464 7.021826137 6.552105022 7.289506572 218763514 dsrA Sulphur sulfite reductase Desulfatibacillum alkenivorans AK-01 7.09055719 7.557480671 7.470880668 7.601390086 7.457580617 223937623 ChrA Metal Resistance Chromium bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 7.826217561 7.305028904 7.345983561 7.231459478 7.081065192 7.420460741 7.254892371 117982933 tfdA Organic Remediation Aromatics Chlorinated aromatics Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.969498135 7.809546121 7.788570315 7.622602031 8.115034247 7.861152012 8.095412942 7.78837314 7.849891981 166362463 gyrB other category gyrB Xanthomonas albilineans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas; 7.628826909 7.642040669 7.874631101 8.146393991 8.272266378 8.44801678 7.974220768 7.983331613 242812473 glx Carbon cycling Carbon degradation Lignin Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 7.644966509 7.578138561 7.408385471 7.044894915 7.567949903 7.745951679 7.469546506 7.413700813 7.526325186 242807156 ABC_antibiotic_transporter Antibiotic resistance transporter Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 7.097906203 7.135282234 7.04401977 44829109 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.21744271 7.47054423 7.851006024 7.722442631 7.511071216 7.919147954 34498979 MFS_antibiotic Antibiotic resistance transporter Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 8.320835012 8.202361007 7.755128555 7.906054779 8.125390105 8.088840354 8.160595952 7.65437704 7.988434452 94311588 ahpC Stress Oxygen stress Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 7.576634985 7.340755027 74318329 katE Stress Oxygen stress Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 7.732760221 7.759936821 7.318601933 7.532430407 7.494409748 7.665973892 7.29051697 7.630446283 7.276380221 163738792 pcc Carbon cycling Carbon fixation Phaeobacter gallaeciensis BS107 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 7.31868132 7.470030927 7.93254576 7.121026181 7.305331661 7.641098219 7.777633755 7.533417226 145589780 pstB Stress Phosphate limitation Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 7.758125095 7.445530746 7.382371423 7.197219836 7.318258879 7.569489057 76667575 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.056387984 7.685536896 7.965410933 8.298264339 8.67483445 8.350361201 8.151729301 8.293622357 70930908 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.338644585 7.708923592 7.622899165 7.307963349 7.678407681 7.850835252 227295576 cda Carbon cycling Carbon degradation Starch Exiguobacterium sibiricum 255-15 8.352685069 8.096934505 7.934978162 7.519337941 8.103938441 8.038730227 7.826154341 8.046323129 7.431991945 212171544 alkB Organic Remediation Other Hydrocarbons uncultured bacterium 7.823954965 8.312202749 8.313544809 7.655215857 8.039403976 7.808817725 8.348204607 8.052842208 117926646 sigma_24 Stress Sigma factors Magnetococcus sp. MC-1 superkingdom:Bacteria;phylum:Proteobacteria;genus:Magnetococcus; 7.950361479 7.967378512 7.919844566 7.522312158 7.788679972 7.785172355 8.147618291 7.954431995 218047587 APS_AprA Sulphur adenylylsulfate reductase uncultured bacterium 6.820075454 7.31097583 14669489 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.441038742 7.217850177 7.540056513 7.102275212 6.882382447 7.69108716 7.317902794 7.482625534 7.591604801 229808487 glnA Stress Nitrogen limitation Collinsella intestinalis DSM 13280 8.874972018 9.01189915 9.012787061 8.425786942 9.182838098 8.408056785 8.892355336 8.962283373 8.949632145 209363643 gyrB other category gyrB Coxiella burnetii Dugway 5J108-111 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Coxiellaceae;genus:Coxiella;species:Coxiella burnetii; 8.082510968 7.858850875 8.119013727 7.645598629 8.383286623 7.905070758 8.271221616 8.229278279 8.296230338 156529364 catB Organic Remediation Aromatics BTEX and related aromatics Vibrio harveyi ATCC BAA-1116 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 7.31635279 7.03827073 218671340 nagI Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium etli GR56 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.41066539 7.370510153 7.213293951 7.410132311 7.779283249 7.511461091 7.161745274 254362343 xylA Carbon cycling Carbon degradation Hemicellulose Mannheimia haemolytica PHL213 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Mannheimia;species:Mannheimia haemolytica; 7.359612838 7.047853447 6.907077589 121704228 endoglucanase Carbon cycling Carbon degradation Cellulose Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7.523756294 7.377838499 7.252642837 7.068967129 7.234705983 7.559859717 7.168660486 24375467 nrfA Nitrogen Dissimilatory N reduction Shewanella oneidensis MR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella oneidensis; 6.914727627 7.095226403 83632047 endochitinase Carbon cycling Carbon degradation Chitin Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 7.123117234 7.195601117 7.450450227 7.11721758 7.275077593 7.411174469 7.038108311 7.074849916 7.291095746 193088108 pstC Stress Phosphate limitation Chloroherpeton thalassium ATCC 35110 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chloroherpeton;species:Chloroherpeton thalassium; 7.753738461 7.574380386 7.635989536 7.264685501 7.74553873 7.618087831 7.61270449 7.408794907 7.804785836 95110855 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae; 7.672651769 7.808363723 7.385973027 7.310367872 7.95257447 7.817556672 7.697665469 7.614631126 7.612696073 93450539 amyA Carbon cycling Carbon degradation Starch delta proteobacterium MLMS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 7.214299246 7.034650933 7.356167586 126710636 MFS_antibiotic Antibiotic resistance transporter Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 8.049058631 8.410340476 8.377396799 8.069656136 8.58498153 8.294251331 8.658157773 8.873744456 8.550242358 186681378 pstB Stress Phosphate limitation Nostoc punctiforme PCC 73102 7.385826884 6.621258611 7.256291781 149200267 sigma_38 Stress Sigma factors Lentisphaera araneosa HTCC2155 superkingdom:Bacteria;phylum:Lentisphaerae;order:Lentisphaerales;family:Lentisphaeraceae;genus:Lentisphaera;species:Lentisphaera araneosa; 7.431686579 7.179348263 7.142783424 6.899435 6.825121791 7.64842695 71283212 sox Sulphur Sulphur oxidation Prosthecochloris vibrioformis DSM 265 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeovibrioides; 7.472055922 7.586657544 7.626622332 7.975731456 7.611098777 7.473778857 7.357946412 7.645716667 227295584 nplT Carbon cycling Carbon degradation Starch Anoxybacillus flavithermus 7.801016378 7.127376128 7.333832789 7.001193286 7.505263839 7.207769506 7.373592699 7.15454722 7.010033889 84391986 pheA Organic Remediation Aromatics Other aromatics Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 8.015418797 8.35115814 8.203178053 7.951488285 8.641236167 8.212450565 8.238480371 8.241733 119654873 amoA Nitrogen Nitrification superkingdom:Bacteria; 7.800660659 7.839959715 7.421673156 7.346553136 7.858059724 7.781121723 7.533184115 7.425740344 7.618146207 219679985 B_lactamase_C Antibiotic resistance Beta-lactamases gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.200025163 7.885205421 7.664608643 7.927754921 7.732283939 7.892714101 7.627769063 7.537291112 52631738 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.030870164 7.999212646 7.721592575 7.637882921 7.349584219 7.921709677 7.809538472 7.560658672 7.928660532 269099345 pstB Stress Phosphate limitation Thermanaerovibrio acidaminovorans DSM 6589 7.638048945 7.350188415 7.352982118 7.328126044 7.581328572 7.486921749 7.154599378 7.736523398 169616228 ureC Nitrogen Ammonification Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 7.391727476 7.180959753 7.008401029 84043075 Catechol Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 6.811161585 7.448219862 258424782 iuc virulence aerobactin Staphylococcus aureus A9635 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus aureus; 7.001355247 6.966344959 88808630 ChrA Metal Resistance Chromium Synechococcus sp. WH 7805 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.671427316 7.61552834 7.756395882 7.628829818 7.355922801 7.60873694 145572455 silC Metal Resistance Silver Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 7.813806498 7.768134126 7.632542794 7.601666413 7.780518949 8.112780137 7.736087694 7.779674841 89333023 ZntA Metal Resistance Zinc Desulfitobacterium hafniense Y51 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 7.292634056 7.409362558 256685237 xylA Carbon cycling Carbon degradation Hemicellulose Jonesia denitrificans DSM 20603 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 7.883691144 7.359266335 7.574686551 7.437752358 7.856467604 7.52166282 7.378592932 7.95693711 113460779 TerZ Metal Resistance Tellurium Haemophilus somnus 129PT superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Histophilus;species:Histophilus somni; 7.267089838 7.147636213 13473079 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 7.000707894 7.606347693 7.573648825 7.70588946 7.63452622 15787632 gdh Nitrogen Ammonification Hebeloma cylindrosporum superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Cortinariaceae;genus:Hebeloma; 7.472833932 7.294449565 7.119633416 6.944264532 7.406985811 7.683893903 7.462613586 7.009636394 7.455583918 169190987 ara Carbon cycling Carbon degradation Hemicellulose Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.486145709 7.657356962 6.890875101 7.397311051 7.528792076 46359646 rubisco Carbon cycling Carbon fixation Hydrogenovibrio marinus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Hydrogenovibrio; 7.192849963 7.056735129 7.506397356 6.769549485 6.842065469 108802217 scnABC Organic Remediation Others Mycobacterium sp. MCS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.446985205 7.284838834 7.322449858 7.014933104 7.691700697 7.870359839 7.332523937 7.473081062 7.423584884 121610333 pcc Carbon cycling Carbon fixation Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 7.618903764 7.560001638 7.591908898 7.253167807 7.04720808 7.9784978 7.440102486 7.720532621 7.763034606 242309600 glnA Stress Nitrogen limitation Helicobacter pullorum MIT 98-5489 7.443196989 7.480449131 7.274507275 237687239 ahpF Stress Oxygen stress Teredinibacter turnerae T7901 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 7.954708367 7.614512771 7.478723718 7.142693064 7.570327692 7.37877563 7.552727605 7.418943201 7.499243697 556633 fimbriae virulence fimbriae Escherichia coli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 7.58625688 7.631313899 7.469217677 6.972346928 7.355407413 7.358768367 7.258299185 7.391518132 239827218 pcc Carbon cycling Carbon fixation Geobacillus sp. WCH70 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.356290091 7.560940298 7.33396248 6.925686491 7.449658063 7.634119173 7.447553871 7.512482204 7.495727041 146338726 rubisco Carbon cycling Carbon fixation Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.620052782 7.781176268 8.088715103 7.485699862 7.761077111 8.072586517 7.474527707 7.606994775 13093059 alkK Organic Remediation Others Mycobacterium leprae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.709702067 7.546469399 7.787601871 7.032735613 7.683232501 7.828858813 7.533490044 7.294234086 7.438439978 85672045 phoB Stress Phosphate limitation Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.582093407 7.917277591 8.047218815 7.384685938 8.062892297 7.88204903 8.03682805 8.002343569 7.760163073 115525936 CopA Metal Resistance Copper Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.442856068 7.980335486 7.445162548 8.033216458 7.786202788 7.413048423 7.412798105 7.688577325 148241019 CueO Metal Resistance Copper Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.360561031 7.591028351 7.638798502 7.638483231 7.10402215 7.542896504 227988258 sigma_24 Stress Sigma factors Meiothermus silvanus DSM 9946 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 7.929764405 7.685953255 7.697685848 7.423447418 7.522567012 7.581885411 7.160600481 7.585788974 7.238318081 254409406 sigma_24 Stress Sigma factors Microcoleus chthonoplastes PCC 7420 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus chthonoplastes; 7.225166284 7.505882585 7.212830181 7.546542959 7.931324779 7.484254314 7.363696628 15075924 MFS_antibiotic Antibiotic resistance transporter Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 7.180302664 7.602293201 7.171303812 7.588028707 7.697876073 157920065 cellobiase Carbon cycling Carbon degradation Cellulose Caldivirga maquilingensis IC-167 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Caldivirga;species:Caldivirga maquilingensis; 7.169291535 7.079774557 7.341773974 37547930 pcpE Organic Remediation Herbicides related compound Arthrobacter chlorophenolicus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.526460524 7.386100995 7.401868856 7.580421081 7.984595991 7.523041847 7.351863252 48094251 Xamo Organic Remediation Other Hydrocarbons Pseudomonas sp. OX1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.308082504 7.150667396 7.292167309 6.962418182 7.467005664 160917512 narG Nitrogen Denitrification uncultured bacterium 7.960801278 8.270247121 8.956598867 7.985948841 8.581690231 8.613851819 151302189 AprA Sulphur adenylylsulfate reductase Desulfothermus naphthae 7.758469936 7.758297288 7.597828567 7.512820566 7.831223155 7.791032432 7.500830771 7.785212509 114196273 pectinase Carbon cycling Carbon degradation Pectin Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.234234326 7.559395248 7.216205835 6.922043931 7.474757439 211905425 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.712809657 7.647009745 8.090735694 7.520659837 8.124463294 7.896197964 7.978095266 7.890184307 7.961054845 148261868 gyrB_gene Bioleaching other category Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 10.21489792 10.16040258 10.16972556 257142711 iro virulence Burkholderia thailandensis E264 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 8.099741215 7.9049075 78366322 nasA Nitrogen Assimilatory N reduction Shewanella sp. PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 7.484416479 7.4621232 7.550270617 7.412413818 7.095786689 7.970208789 7.015462661 7.388727555 7.33134163 126544298 proV Stress Osmotic stress Methanohalophilus portucalensis FDF-1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanohalophilus;species:Methanohalophilus portucalensis; 7.380525991 7.260971319 7.22990344 50843169 pcc Carbon cycling Carbon fixation Propionibacterium acnes KPA171202 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 7.209910254 7.243753952 7.144833164 6.801258389 7.482655864 7.512978668 7.083810404 7.224743154 7.486172062 82702685 arcB Stress Oxygen limitation Nitrosospira multiformis ATCC 25196 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira;species:Nitrosospira multiformis; 7.244977819 7.095997984 154247260 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 7.277975423 7.372207911 7.496106784 7.184496252 7.570785102 7.715736774 7.706789902 7.537517669 7.45781263 13751191 PceA Organic Remediation Others uncultured microorganism DCP/6-201 superkingdom:Bacteria; 7.469843088 7.637557287 7.409300354 7.142964364 7.452694357 7.581518313 7.49567612 7.609746409 7.273468385 36784255 B_lactamase_C Antibiotic resistance Beta-lactamases Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 7.247830832 7.091267968 7.366903286 7.168997163 7.791898276 2621474 CadA Metal Resistance Cadmium Methanothermobacter thermautotrophicus str. Delta H superkingdom:Archaea;phylum:Euryarchaeota;class:Methanobacteria;order:Methanobacteriales;family:Methanobacteriaceae;genus:Methanothermobacter;species:Methanothermobacter thermautotrophicus; 7.567000971 7.439606586 7.265270392 7.501689387 7.290825583 133740195 ahpC Stress Oxygen stress Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 7.135650713 7.326174209 7.133289926 7.140899363 6.540539839 7.438086479 7.2023049 7.643437918 120325440 pilin virulence pilin Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 7.695524558 7.674249439 7.534254458 7.125520787 7.667986647 117988663 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 6.886254274 6.95104004 187604926 gyrB other category gyrB Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 7.055568652 7.165210174 7.348747546 7.261756162 7.451324765 2627147 tdnB Organic Remediation Aromatics Other aromatics Acinetobacter sp. YAA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 7.186932283 7.321053627 7.077803417 7.488345028 53854604 dsrB Sulphur sulfite reductase Desulfovibrio aerotolerans superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 7.703433232 7.434577789 7.65533691 7.651964616 7.585013895 7.657078694 7.783249687 145238358 phoA Stress Phosphate limitation Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.543536318 7.718865747 7.362325844 7.414485056 7.283716143 7.579114147 255717192 endochitinase Carbon cycling Carbon degradation Chitin Lachancea thermotolerans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Lachancea;species:Lachancea thermotolerans; 7.7902654 7.664201807 7.376346287 7.357320086 7.468959472 7.578193097 7.527777312 7.641287045 146308481 SMR_antibiotics Antibiotic resistance transporter Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 7.975011571 7.60214677 7.389104756 7.52532139 7.332805503 7.47664752 7.15867663 118434673 type_III_secretion virulence secretion Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 7.634768642 7.338811932 7.412767402 113529109 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 7.820034212 7.713632218 7.384293505 8.000637027 7.813635304 7.637126922 7.851859843 192812786 ureC Nitrogen Ammonification Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.193728006 7.222945787 8.042163095 7.591378388 7.700966818 7.608878525 7.703074823 7.370790944 7.818842607 108800912 ZntA Metal Resistance Zinc Mycobacterium sp. MCS 7.904878939 7.792480717 7.217795338 7.641642007 8.024890785 8.203663446 7.986609567 7.836784398 7.598867046 85723987 glnA Stress Nitrogen limitation Syntrophus aciditrophicus SB 8.153705327 8.256112191 8.162146633 7.954250059 7.901245612 8.151551995 8.161542707 8.241840804 146303495 sulfoxide_reductase Bioleaching Sulphur Metallosphaera sedula DSM 5348 7.408282304 7.283576036 7.208113003 7.10002441 7.313607363 46119502 nagG Organic Remediation Aromatics Aromatic carboxylic acid Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 7.402289312 7.367242819 7.154370935 7.043736854 7.03347133 7.594772695 7.063913007 7.055457835 7.593966519 149824964 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Limnobacter sp. MED105 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 7.513459717 7.656072449 7.566468328 7.006083468 7.107047652 7.760563481 7.583680875 7.085683419 7.272126396 17385482 narG Nitrogen Denitrification Paenibacillus sp. Lgg15.15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.595207787 7.635666405 7.563623608 6.874559728 7.110511986 7.660584084 7.376005106 7.426556396 213925048 TerD Metal Resistance Tellurium Pseudomonas syringae pv. tomato T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 7.720985602 7.702774982 7.318887366 7.367584727 7.595845143 7.772360628 7.631848063 7.453430763 7.596825605 260768057 MFS_antibiotic Antibiotic resistance transporter Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 7.802726508 7.596090296 261408025 hly virulence hemolysin Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.238565999 6.929687544 6.591750545 6.990014544 7.324456952 120326119 grpE Stress Heat shock Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 8.186772874 7.902555011 8.011175416 8.089642146 7.799420117 8.055176652 123228580 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.610328745 7.634738917 7.47716512 7.595406162 7.236307919 7.220992141 7.418573306 120554072 pimF Organic Remediation Aromatics Aromatic carboxylic acid Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 7.73358453 7.415962548 7.36968201 7.334361222 7.244040968 7.566973723 7.340918525 7.169971042 7.557628343 161383499 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 7.505180235 7.805640259 8.064112178 7.398037751 7.923605879 7.874214402 7.315837257 7.754858762 209518021 AceA Carbon cycling Carbon degradation others Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.789326605 7.725196511 7.83437949 7.769081568 8.082116226 8.144496166 7.801964838 7.883418628 83638346 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. T104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7.788377726 8.019605339 7.641626628 7.757979323 8.174710629 7.866110418 8.064554321 7.71051688 7.979193112 211927049 gyrB other category gyrB Rhodococcus erythropolis 8.380060177 8.626490522 8.590324351 8.303419599 8.702482902 8.50733033 8.422249126 8.96445266 8.478423493 212637027 ChrA Metal Resistance Chromium Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 7.305126449 7.404166455 7.333920998 122088277 cellobiase Carbon cycling Carbon degradation Cellulose Yersinia enterocolitica subsp. enterocolitica 8081 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 7.628338125 7.423323811 7.597087026 7.242240988 7.598457008 7.20731867 7.381118906 7.000923356 52424209 oxyR Stress Oxygen stress Mannheimia succiniciproducens MBEL55E superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Basfia;species:Mannheimia succiniciproducens; 7.372847024 7.304423032 7.347029857 7.534485739 7.322925371 7.538281436 7.449898302 7.639987911 7.534916263 59480518 pimF Organic Remediation Aromatics Aromatic carboxylic acid Vibrio fischeri ES114 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Vibrio fischeri; 7.110311675 7.205920299 6.943812932 7.649303688 25990808 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.484579105 6.940809846 7.367130938 7.351299326 7.067967536 7.544561002 261342628 obgE Stress Radiation stress Enterobacter cancerogenus ATCC 35316 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 7.177995531 7.35647733 7.442628712 7.008429778 7.183779763 7.190109695 7.275882302 7.120235769 7.246195394 76363131 pcaG Organic Remediation Aromatics Other aromatics Rhodococcus sp. UFZ-B521 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7.786520986 7.467886189 7.297882414 7.211764586 7.328073707 7.606426383 58337968 amyX Carbon cycling Carbon degradation Starch Lactobacillus acidophilus NCFM superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus acidophilus; 7.760369483 7.708474432 7.486261485 7.346873332 7.287632549 7.717477254 7.66450747 7.263683971 57242558 toxin virulence toxin Campylobacter upsaliensis RM3195 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter upsaliensis; 7.470580205 7.396397545 7.454092112 148554762 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 7.85042114 7.447860524 7.413289851 253999496 sigma_24 Stress Sigma factors Methylovorus sp. SIP3-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylovorus; 8.011215736 7.777993535 7.398712879 7.733098257 7.769101125 7.87251559 7.79569116 7.436912623 7.533155758 86573252 CODH Carbon cycling Carbon fixation Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.420992652 7.537070408 7.8558739 7.221896606 7.544391398 27376231 xylA Carbon cycling Carbon degradation Hemicellulose Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.793304547 7.575910695 6.823894091 7.264454744 7.895419093 6.835742035 7.282893883 158435201 atzA Organic Remediation Herbicides related compound Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 7.535122565 7.05852278 7.155876564 26278736 narG Nitrogen Denitrification uncultured bacterium 8.443804942 8.255615476 8.062684515 8.324171126 8.192509999 8.109520086 8.284964888 8.352817046 8.507251022 84501854 pimF Organic Remediation Aromatics Aromatic carboxylic acid Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 7.530619657 7.34590109 7.188754181 7.426670605 85817510 AceB Carbon cycling Carbon degradation others Dokdonia donghaensis MED134 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Dokdonia;species:Dokdonia donghaensis; 7.079810397 7.038743688 224523202 pstS Stress Phosphate limitation Bacteroides cellulosilyticus DSM 14838 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 6.899034053 6.726950484 16200253 B_lactamase_C Antibiotic resistance Beta-lactamases Buttiauxella sp. BTN01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Buttiauxella; 8.366181675 8.287049944 8.035994041 7.986029714 8.277684606 8.076629342 8.179073871 7.971330693 8.577599944 16329860 ZntA Metal Resistance Zinc Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 7.373208543 7.137636967 7.043864684 7.108471075 7.627994597 194512266 bphA Organic Remediation Aromatics Polycyclic aromatics Burkholderia pseudomallei Pasteur 52237 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 7.60583226 7.691025039 7.259366807 7.392517852 7.599630731 7.300323859 7.364519668 46116002 ChrA Metal Resistance Chromium Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 7.251603755 7.117188531 7.361516697 7.040114366 7.056493957 7.305749325 24421437 nirS Nitrogen Denitrification uncultured organism 7.697789203 7.679544001 7.621076692 7.27577835 7.828290114 7.514589745 7.605330778 7.250515132 184154681 srt virulence surface protein Lactobacillus fermentum IFO 3956 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus fermentum; 7.759035739 7.342938616 7.400131472 7.266765762 7.551242775 7.700924674 7.155168366 7.444202587 269139956 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Edwardsiella tarda EIB202 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella tarda; 7.186271761 7.301214637 7.719156552 7.931440911 7.261898817 7.793946406 7.099666476 7.14915162 109452548 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.529177218 7.427821739 7.125525103 7.605099115 7.382796673 7.515189126 7.309799046 187715554 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.84943196 7.511384063 7.497692238 7.393542117 7.818969276 7.863420969 7.48922909 7.603861953 7.808833421 151281554 nmoA Organic Remediation Aromatics Nitoaromatics Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 7.30568398 7.544007036 7.40784491 7.307854462 7.107907389 77546552 NirB Nitrogen Assimilatory N reduction Pelobacter carbinolicus DSM 2380 8.120786869 7.928610692 7.395295263 7.892964165 7.838819983 7.763476079 7.64132986 7.703334651 84498215 pulA Carbon cycling Carbon degradation Starch Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 7.415660037 7.337051677 7.745108654 7.554244815 7.261162499 8.063843293 7.370687203 7.245784766 7.501724624 121700426 tfdA Organic Remediation Aromatics Chlorinated aromatics Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7.506183436 7.399121338 242281194 ahpF Stress Oxygen stress Desulfovibrio salexigens DSM 2638 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio salexigens; 7.262353166 7.154319056 6.874156084 7.535649379 7.103308191 6.993805551 7.042076258 256374408 fnr Stress Oxygen stress Actinosynnema mirum DSM 43827 8.116234789 7.813455356 8.032730194 7.392641699 7.828649975 7.872465704 7.703220026 8.042227344 7.559757761 32446926 sigma_70 Stress Sigma factors Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 7.00906518 7.161172204 7.871267526 7.43797029 7.410852095 7.649900654 7.887761063 7.770297431 52211510 sigma_24 Stress Sigma factors Burkholderia pseudomallei K96243 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 8.841072803 8.799752623 8.755038262 8.918333394 8.762495827 8.753116178 8.978026185 9.035533257 270290000 xylA Carbon cycling Carbon degradation Hemicellulose Pediococcus acidilactici 7_4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Pediococcus;species:Pediococcus acidilactici; 7.616857918 7.44044428 7.432658643 7.473239095 71919863 cmuA Organic Remediation Chlorinated solvents uncultured bacterium superkingdom:Bacteria; 7.624235542 7.378412161 242121157 dsrA Sulphur sulfite reductase Desulfovibrio salexigens DSM 2638 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio salexigens; 7.469334141 7.343788319 7.211296885 6.870724822 7.760870213 7.051620605 6.88003483 123440800 obgE Stress Radiation stress Yersinia enterocolitica subsp. enterocolitica 8081 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 7.159720473 7.0871955 7.238732434 6.893992962 6.724564517 7.326035617 6.967920028 7.382313117 60476306 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.210058259 7.159869581 7.315764866 6.78459545 7.181929207 7.450379296 7.228134166 7.041704757 7.350350894 148260114 NADH_quinone_oxidoreductase Bioleaching Electron transport Acidiphilium cryptum JF-5 7.51694375 8.072991808 7.128845082 7.412533745 7.610315823 7.334220975 7.410283681 28852930 linB Organic Remediation Pesticides related compound Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 7.913415169 8.082822195 7.911469607 8.141149069 8.326710675 8.488985553 8.011085931 8.20716497 210074540 CopA Metal Resistance Copper Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.382358849 7.469677197 7.541808139 7.461058397 6.636345454 7.330726607 7.277823829 7.833523458 213964076 ahpC Stress Oxygen stress Capnocytophaga sputigena Capno superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga sputigena; 7.300851903 7.362892363 7.154398539 116103444 srt virulence surface protein Pediococcus pentosaceus ATCC 25745 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Pediococcus;species:Pediococcus pentosaceus; 7.08696217 6.888056686 7.196877503 6.585165792 7.373768077 7.080825318 7.135220476 121704421 katE Stress Oxygen stress Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 8.237705166 8.091047996 7.63146468 8.149445875 7.935293046 8.024045626 7.873218976 7.886114414 7.637973369 49532521 B_lactamase_C Antibiotic resistance Beta-lactamases Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 7.730625668 7.53500232 7.440692834 7.096127579 7.560928082 7.123083638 7.156079498 148830016 fnr Stress Oxygen stress Erythrobacter sp. SD-21 7.36140323 7.330127787 7.420977791 6.964152379 7.255508712 7.49356935 7.541225241 7.586979885 196233843 narI Stress Oxygen limitation Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 7.289901904 7.384558689 7.113145659 7.335156678 7.007158598 7.248406551 7.265918455 7.186417319 95110148 czcC Metal Resistance "Cadmium,Cobalt,Zinc" Pseudomonas superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae; 7.794026803 8.051636372 7.87949686 7.814083113 7.879101115 8.199378848 7.895349137 8.052635618 7.947683021 56379903 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus kaustophilus; 7.735653063 7.884810716 7.935035157 8.37035853 7.804426509 8.46818085 8.444870961 8.421174392 8.284325637 148499650 vanA Carbon cycling Carbon degradation Others Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 7.492115265 7.15877999 7.373757912 7.374104397 7.711292562 194012826 CopA Metal Resistance Copper Bacillus pumilus ATCC 7061 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pumilus; 6.718300086 7.044991271 6.81262768 6.929975974 6.926508048 109899622 pstC Stress Phosphate limitation Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 7.453456805 7.357508025 7.381540435 7.234675258 7.096528464 7.764444573 7.278737917 7.312556274 72123021 nagI Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.722657492 7.662360432 7.683666889 7.893682067 7.527007168 8.13951683 7.564602875 7.389885342 145591139 dsrB Sulphur sulfite reductase Pyrobaculum arsenaticum DSM 13514 7.141232966 7.012360866 54969634 B_lactamase_A Antibiotic resistance Beta-lactamases uncultured bacterium superkingdom:Bacteria; 7.480719616 7.775976689 7.521788396 6.980231304 7.541320073 7.567493529 7.449406038 7.917545325 154159550 sox Sulphur Sulphur oxidation Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 7.588263433 7.540997192 7.847922289 7.544599215 7.630174485 7.876111099 7.366915444 7.92359989 7.273583546 94470859 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.445799987 7.354835335 7.116332895 7.025171055 7.62931736 171697256 pstS Stress Phosphate limitation Cyanothece sp. ATCC 51142 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.950455835 8.631598238 8.764839363 8.225474268 8.498303047 8.440961717 8.698636154 8.735489242 8.352816093 255938758 endochitinase Carbon cycling Carbon degradation Chitin Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 7.222153241 6.893435308 34017142 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 8.130329522 7.989323474 7.322342116 7.265797194 7.447967277 7.613782241 7.597428549 7.257240704 261408168 SMR_antibiotics Antibiotic resistance transporter Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.531281512 7.806980489 7.488745987 7.105911439 7.568037459 7.649107208 7.702908072 7.526519608 121307178 obgE Stress Radiation stress Thermosinus carboxydivorans Nor1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Thermosinus;species:Thermosinus carboxydivorans; 7.149628532 6.786237521 7.098703151 7.114417261 7.450218713 163739534 CopA Metal Resistance Copper Phaeobacter gallaeciensis BS107 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 7.848158997 7.694878117 7.628612781 7.634579087 7.527541282 7.818563975 7.57852194 12053584 Tet Antibiotic resistance other Escherichia coli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 7.208152435 7.212518815 196157952 ppk Phosphorus Phosphorus utilization Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 7.621844608 7.602283272 7.538316114 7.05445466 7.350107935 7.562698871 7.20977045 7.342441658 7.559230923 66391797 helicase_P4alpha_type Bacteria phage REPLICATION Streptococcus phage 2972 order:Caudovirales;family:Siphoviridae; 7.179404906 6.9676735 84362891 ArsC Metal Resistance Arsenic Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 8.54640757 8.115408799 8.164319024 7.754047012 8.528919439 8.010129424 8.012953709 8.523088594 7.938354831 182635873 tfdA Organic Remediation Aromatics Chlorinated aromatics Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 7.279122376 7.307547712 7.148303327 6.817777726 7.302827356 6.985778576 7.148548364 167630087 fnr Stress Oxygen stress Heliobacterium modesticaldum Ice1 7.626318242 7.580567887 73538544 bphA Organic Remediation Aromatics Polycyclic aromatics Ralstonia eutropha JMP134 8.555778011 7.75028201 7.69740555 8.212260405 8.301599121 8.259535257 7.961082959 7.879264752 7.767951671 217335983 pstA Stress Phosphate limitation Dictyoglomus turgidum DSM 6724 7.216386149 6.828397191 7.104355063 157146840 silC Metal Resistance Silver Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 7.77362013 7.742944598 7.40547305 7.577351776 7.6958842 8.011953499 7.506438838 7.1865339 7.403929039 88855774 pstB Stress Phosphate limitation marine actinobacterium PHSC20C1 7.380297626 7.385889111 6.626420316 7.62883989 73538623 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.423898465 7.663988613 7.581847834 7.473052567 7.374184981 7.408481382 188931047 atzA Organic Remediation Herbicides related compound Sulfurihydrogenibium sp. YO3AOP1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Hydrogenothermaceae;genus:Sulfurihydrogenibium; 6.925693869 7.246001561 6.991382049 7.011582693 7.390294123 7.220878254 7.188789291 15615553 pstB Stress Phosphate limitation Bacillus halodurans C-125 7.09062346 7.02336984 7.18572019 196177630 ahpC Stress Oxygen stress Microcoleus chthonoplastes PCC 7420 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus chthonoplastes; 7.255159489 7.381989671 261600984 aclB Carbon cycling Carbon fixation Sulfolobus solfataricus 98/2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus;species:Sulfolobus solfataricus; 7.016993254 6.740052885 238895631 cap virulence capsule Klebsiella pneumoniae NTUH-K2044 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 8.436206885 8.257058035 8.177079009 7.622420875 8.286048578 7.55850355 7.91170547 7.914310634 8.454503744 109632995 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.411230496 7.416795405 7.400851308 83590233 dmsA Organic Remediation Others Moorella thermoacetica ATCC 39073 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Moorella;species:Moorella thermoacetica; 7.121153576 6.821413655 6.960417312 189496397 sigma_32 Stress Sigma factors Chlorobium phaeobacteroides BS1 7.771532788 7.589474161 7.540438796 7.328698245 7.56032466 7.943164581 7.513693136 7.587352238 7.178413462 152996682 bphA Organic Remediation Aromatics Polycyclic aromatics Marinomonas sp. MWYL1 7.189548959 6.997238305 7.071983702 147850775 pstS Stress Phosphate limitation Synechococcus sp. RCC307 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.175247537 6.866064087 7.011740971 7321229 narH Stress Oxygen limitation Pseudomonas sp. SK-1-3-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.836907732 7.675832778 7.574758603 7.5828978 7.491070063 7.68209905 7.335907273 7.630813504 7.501435997 40253038 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.201327456 7.013369668 121605350 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 7.843610337 7.743222758 7.663517053 7.456321458 7.213128423 7.877190342 7.22976736 7.653696518 7.312695896 256533502 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 7.192282672 6.858844339 7.397217612 7.033134002 7.660105608 160938814 Al Metal Resistance Aluminum Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 7.195448243 7.38341553 7.199268421 7.681717736 77956957 MFS_antibiotic Antibiotic resistance transporter Yersinia bercovieri ATCC 43970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 7.363305579 7.652583199 7.722465675 7.727758976 7.596803552 7.604319701 7.401831891 7.234075645 7.570339677 215510108 Tet Antibiotic resistance other Ixodes scapularis superkingdom:Eukaryota;kingdom:Metazoa;phylum:Arthropoda;class:Arachnida;order:Ixodida;family:Ixodidae;genus:Ixodes; 7.29257972 7.204476193 7.559752315 7.625372965 6.965925338 7.901687349 7.150706959 7.304028876 7.401201964 120555995 narH Stress Oxygen limitation Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 8.03017015 7.899345703 7.87378418 7.653807867 8.076144746 7.785414599 7.877935456 7.828464498 166200714 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.21333399 6.93234069 7.392422374 6.982450061 7.30297404 169832099 pstA Stress Phosphate limitation Candidatus Desulforudis audaxviator MP104C 7.17990352 7.168076185 6.920913541 217969880 fnr Stress Oxygen stress Thauera sp. MZ1T 7.561600465 7.632499802 7.757502305 7.294263218 7.465468896 7.150921923 7.699603745 7.497814793 218725179 ChrA Metal Resistance Chromium Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 7.42016459 7.982177274 7.753808579 7.364467488 7.981847546 73294212 aclB Carbon cycling Carbon fixation Sulfurimonas sp. Go25-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Sulfurimonas; 6.880913344 7.070406232 7.190492034 7.181934711 7.365005209 121592575 catB Organic Remediation Aromatics BTEX and related aromatics Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 7.789430709 7.494281459 7.215292359 7.251843551 7.08850688 7.294741353 7.191924663 113525091 alkK Organic Remediation Others Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 7.651528927 7.294658094 7.4143997 7.204360948 7.40117546 7.819842597 7.601110157 7.219917834 7.486316801 73542681 pcc Carbon cycling Carbon fixation Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.425902924 8.319328622 8.043106112 8.307268115 8.599064301 8.378416503 8.422830629 8.360169384 8.61227078 110283340 ZntA Metal Resistance Zinc Mesorhizobium sp. BNC1 8.060448595 7.720864379 7.186766898 7.580647148 7.661194243 8.006865028 7.453418623 7.500547887 7.471072439 89351417 Catechol Organic Remediation Aromatics Other aromatics Xanthobacter autotrophicus Py2 7.806812577 8.006339975 7.850702221 7.526601344 8.138412754 7.998986819 8.26048926 7.922628462 7.920763857 139478485 mer Metal Resistance Mercury uncultured soil bacterium superkingdom:Bacteria; 7.658205361 7.791877416 7.52094003 7.736747157 7.522950878 7.908701466 7.428342552 7.504586762 7.663959194 268162892 hly virulence hemolysin Photobacterium damselae subsp. damselae CIP 102761 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium damselae; 7.328496805 7.2914255 7.196246409 212560597 hly virulence hemolysin Anoxybacillus flavithermus WK1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Anoxybacillus;species:Anoxybacillus flavithermus; 7.548602711 7.087862539 7.220272669 7.034907526 7.482180492 87290567 ahpC Stress Oxygen stress Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 8.085450833 8.0126834 7.604323211 7.731042883 7.544969996 7.320894627 7.298910239 7.543226645 84786561 ppx Phosphorus Phosphorus utilization Erythrobacter litoralis HTCC2594 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 7.338129171 7.669630793 7.666697773 7.631522703 6.652148621 7.100382378 7.678557967 126209080 ureC Nitrogen Ammonification Actinobacillus pleuropneumoniae L20 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus pleuropneumoniae; 7.324553211 7.334105492 7.160390772 6.677301244 7.558781195 83972410 nosZ Nitrogen Denitrification uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 7.320263042 7.3257416 7.375494294 7.407259353 7.278329997 7.304620091 7.449865533 7.33950407 251787711 xylA Carbon cycling Carbon degradation Hemicellulose Dickeya zeae Ech1591 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 8.196910055 8.003390717 7.93688141 8.084114403 8.294616369 8.601257146 8.353703253 8.342123037 8.137484131 260904855 grpE Stress Heat shock Brevibacterium linens BL2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium linens; 7.634251235 7.63530117 7.446985875 7.279726892 7.715464532 7.957084809 7.632621699 7.356349165 7.68358144 222525446 pcc Carbon cycling Carbon fixation Chloroflexus sp. Y-400-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus; 7.402021213 7.543961708 7.412766192 225569385 pstB Stress Phosphate limitation Clostridium hylemonae DSM 15053 7.197249289 6.656685124 7.291541055 7.374497088 7.492085973 7.349404317 66801899 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 7.207203414 7.420090164 8.061454973 7.617898629 7.379570504 8.149683152 7.411077685 7.440197765 111063133 amyA Carbon cycling Carbon degradation Starch Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 7.1734044 7.021465396 7.142166492 6.903125322 6.744285166 7.489309475 7.10770764 7.235535782 7.191956321 29349979 sigma_24 Stress Sigma factors Bacteroides thetaiotaomicron VPI-5482 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides thetaiotaomicron; 7.814206435 7.504351239 7.741799195 7.158700356 7.670971716 7.569846093 7.981912383 7.426095432 121495552 narG Nitrogen Denitrification uncultured bacterium 7.031484159 7.043527246 7.277226357 7.107169852 7.706018872 7.238441577 7.560514904 2425103 4HBH Organic Remediation Aromatics BTEX and related aromatics Azotobacter chroococcum 7.658502593 7.867568799 7.591477453 7.448201109 7.973271937 8.054342286 8.035937766 7.742829754 73534199 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.177431255 7.26411957 158138755 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.62374665 7.454877987 7.784676603 7.544173966 7.215379037 7.950127817 7.291499663 7.119335703 126237405 hly virulence hemolysin Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.956011359 7.713851328 7.730995879 7.595375095 7.962691644 7.903613499 7.913153835 7.786498819 7.751392835 55978119 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.186751549 7.163788762 7.448364355 7.685933125 6.922664086 7.707050305 7.226671519 7.107104838 7.164748664 218319038 Ni_Fe_hydrogenase Energy process Energy process Dehalococcoides sp. BAV1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.483510461 7.120393839 6.708302126 7.214207908 14276800 dsrB Sulphur sulfite reductase Desulfotomaculum geothermicum superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 7.688458487 7.660956256 7.330690086 7.189993373 7.787217842 7.761888221 7.793732975 7.815432637 7.689777303 219851317 CopA Metal Resistance Copper Candidatus Methanosphaerula palustris E1-9c superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;genus:Methanosphaerula;species:Methanosphaerula palustris; 7.349999891 7.240876898 7.403697489 7.220927453 7.544656351 7.169113555 6.963783621 7.275876187 91788009 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 7.468606022 7.39144495 7.209095715 7.196173204 7.144445221 7.442514224 156743617 fnr Stress Oxygen stress Roseiflexus castenholzii DSM 13941 7.893693361 8.090568374 7.463639208 7.212969925 7.905856575 7.873832036 7.716304339 7.407891132 7.725430639 156523001 APS_AprA Sulphur adenylylsulfate reductase uncultured bacterium superkingdom:Bacteria; 7.890523248 7.816448641 7.502317111 7.469729499 7.938507402 8.099950431 7.809823727 7.559540249 8.001024141 110341164 silC Metal Resistance Silver Chlorobium ferrooxidans DSM 13031 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium ferrooxidans; 8.454408924 8.341673653 8.546736645 8.067608286 8.967555229 8.402789659 8.655797745 8.383448938 8.547348051 19912099 gyrB other category gyrB CFB-group bacterium QA93A superkingdom:Bacteria;phylum:Bacteroidetes; 7.835473384 7.874381073 7.632792852 7.1642429 8.008541641 7.705759253 7.440829864 7.59656352 7.887465354 27350935 tftH Organic Remediation Aromatics Chlorinated aromatics Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.173596754 7.125982873 108769037 Catechol Organic Remediation Aromatics Other aromatics Mycobacterium sp. MCS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.296766191 7.392947396 7.488182789 7.327658277 1653494 ArsC Metal Resistance Arsenic Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 7.962383615 7.453303635 7.739081001 8.112440166 7.724678041 7.369524127 7.756526669 7.680746671 254788364 phoB Stress Phosphate limitation Teredinibacter turnerae T7901 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 7.145193826 7.402581889 7.585110879 148830696 B_lactamase_A Antibiotic resistance Beta-lactamases Erythrobacter sp. SD-21 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 9.416767663 8.926088016 9.185419463 116069840 gyrB other category gyrB Pseudomonas sp. 1XB1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.109168089 7.431998778 7.003982454 6.913151706 7.59543981 110637991 ArsC Metal Resistance Arsenic Cytophaga hutchinsonii ATCC 33406 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Cytophaga;species:Cytophaga hutchinsonii; 7.804919938 7.288027667 7.343945562 7.485456632 7.319750904 7.660971656 7.401989379 7.522436153 7.398656869 95110794 tfdA Organic Remediation Aromatics Chlorinated aromatics Pseudomonas superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae; 7.753106026 8.059910858 8.043307828 7.873100947 8.372566275 7.906594835 8.347236752 8.320927412 8.265092427 254281995 BchY other category chlorophyllide reductase gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.709960173 7.636984184 7.203954958 6.902054132 7.310652028 7.270806921 7.069431428 46101861 exochitinase Carbon cycling Carbon degradation Chitin Ustilago maydis 521 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Ustilaginomycetes;order:Ustilaginales;family:Ustilaginaceae;genus:Ustilago;species:Ustilago maydis; 7.086062933 6.884343884 7.18118657 7.202768694 6.815780687 7.628404726 7.247853693 7.324951267 148261977 related_thiosulfate_gene Bioleaching Sulphur Acidiphilium cryptum JF-5 7.425618505 8.060661916 7.7799524 7.34588448 8.109991232 7.863662174 8.504540516 145296381 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium glutamicum R 7.368731893 7.263143441 7.323504164 6.773874418 7.297046179 7.541925192 7.124922761 7.091422295 7.143125812 255342073 xylA Carbon cycling Carbon degradation Hemicellulose Flavobacteriaceae bacterium 3519-10 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae; 7.319727628 7.115830799 7.357767201 7.027165197 6.805967435 7.230106813 7.051137764 6.829949914 121306339 pstB Stress Phosphate limitation Thermosinus carboxydivorans Nor1 7.188270501 7.46350993 6.855712164 6.796607099 7.423808367 6.964696709 6.960284788 85671916 ChrA Metal Resistance Chromium Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.000486784 7.99825926 7.52501633 7.508442048 8.010123667 7.992470158 8.013754302 7.820541625 8.038481769 260906427 clpC Stress Protein stress Brevibacterium linens BL2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium linens; 7.736667735 7.303929825 8.055423664 7.950640983 7.669616837 8.262063837 76874900 CorC Metal Resistance Cobalt Pseudoalteromonas haloplanktis TAC125 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas haloplanktis; 7.35496998 6.824413687 6.896556199 163732315 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 7.356188454 7.576176883 7.670612628 7.069024754 7.346659857 7.591387601 7.45212757 7.688618617 56965486 Tet Antibiotic resistance other Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 7.594222121 7.592793898 7.33263603 7.108544985 7.426596977 7.650960619 7.385700101 7.549001802 7.281082847 111222904 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 7.644772648 7.796929442 7.617889763 8.09839405 7.840199113 7.932803777 8.047580277 8.399375214 187719114 phdCI Organic Remediation Aromatics Polycyclic aromatics Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.560624258 7.495207085 7.524516385 7.623423546 7.874073241 7.811909821 7.605159065 7.907404678 148499796 vanA Carbon cycling Carbon degradation Others Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 7.472966296 7.697595941 8.204194095 7.854969952 7.719124194 7.710890735 7.756751961 39998303 obgE Stress Radiation stress Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 7.471252635 7.435745847 7.612802717 7.237738432 7.362938346 29134845 srt virulence surface protein Streptococcus oralis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 8.547780826 7.782888204 8.124032887 7.745920887 7.77124 8.064228272 8.038929978 7.72534263 111020426 chnB Organic Remediation Other Hydrocarbons Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7.570473208 7.317553022 8.033304102 7.685991184 7.146750053 7.875142505 7.39075521 7.503569373 7.416189103 120325250 pimF Organic Remediation Aromatics Aromatic carboxylic acid Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 7.125251415 7.33844785 7.094556388 7.454858863 209401852 narG Nitrogen Denitrification uncultured bacterium 7.395649228 7.015036378 7.165423769 7.012797136 7.072637617 7.464349288 7.329136879 7.019823999 252125083 ahpC Stress Oxygen stress Corynebacterium matruchotii ATCC 14266 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium matruchotii; 7.131193195 7.170640033 6.800876626 6.79792265 7.505176403 167074445 nhh Organic Remediation Aromatics Nitoaromatics Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.608478096 7.400362718 7.396521076 6.974342901 7.539138307 7.621764909 8.060943207 7.459498521 56785438 phenol_oxidase Carbon cycling Carbon degradation Lignin Trametes sp. AH28-2 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 7.554225191 7.097738223 7.323494524 7.409859027 6.947836071 7.126742964 7.086763133 117164436 linB Organic Remediation Pesticides related compound Streptomyces ambofaciens ATCC 23877 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ambofaciens; 7.89714999 8.024541849 7.927014724 7.456697083 7.979877254 7.746631028 7.548802556 7.924807522 164614369 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 6.867513988 6.831249226 7.319462783 6.846800954 7.223609249 1001684 sigma_70 Stress Sigma factors Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 7.956715462 7.629207637 7.182945436 7.403841691 7.640961114 7.304379739 7.268210032 114562494 cellobiase Carbon cycling Carbon degradation Cellulose Shewanella frigidimarina NCIMB 400 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella frigidimarina; 7.985424187 7.861042523 8.097602013 7.198928923 7.601198928 7.626544864 7.835931706 8.112244275 7.458887908 4038456 xylanase Carbon cycling Carbon degradation Hemicellulose Bacillus pumilus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.337383496 7.287425119 7.123457177 7.38246943 7.862437516 7.88369894 7.76272117 7.837819819 258544870 glnA Stress Nitrogen limitation Cardiobacterium hominis ATCC 15826 7.647843251 7.785037615 7.40762214 119354216 pstA Stress Phosphate limitation Chlorobium phaeobacteroides DSM 266 7.297900087 6.70057592 7.030233301 197282292 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.436236427 7.163697024 188019313 TerD Metal Resistance Tellurium Providencia stuartii ATCC 25827 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia stuartii; 7.652107154 7.571617492 7.485489718 7.693724466 7.321587464 8.133124687 7.422321285 7.564243094 7.555514002 254487434 ureC Nitrogen Ammonification Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.273901823 7.04598573 7.085255643 6.851319054 7.519009149 7.351439806 6.964740504 196166644 BchY other category chlorophyllide reductase uncultured bacterium superkingdom:Bacteria; 7.380708767 7.329291295 7.284795416 7.074326087 7.480999415 7.417717093 7.494223648 7.280880242 169117839 mer Metal Resistance Mercury uncultured organism 8.330699173 8.063223597 7.889665749 7.796318807 7.806333574 7.890781156 7.95343142 253573651 endochitinase Carbon cycling Carbon degradation Chitin Paenibacillus sp. oral taxon 786 str. D14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 7.686067222 7.459648654 7.727914962 7.18607677 7.643739053 7.696334706 7.414147588 7.414877472 7.636738995 229793054 sigma_70 Stress Sigma factors Shuttleworthia satelles DSM 14600 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Shuttleworthia;species:Shuttleworthia satelles; 7.812368278 7.565145721 7.241156155 7.085126668 7.393099027 7.384626713 50841085 grpE Stress Heat shock Propionibacterium acnes KPA171202 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 7.824199529 7.831132804 7.630809508 7.610421656 7.965682003 7.856990704 7.731841386 7.544020468 7.843879836 161391886 xylA Carbon cycling Carbon degradation Hemicellulose Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 7.49559098 7.313336955 7.378690631 7.331651973 7.039776636 7.730402381 213157180 alkB Organic Remediation Other Hydrocarbons Acinetobacter baumannii AB0057 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 7.41377869 7.110925241 6.990207108 149203241 fnr Stress Oxygen stress Roseovarius sp. TM1035 7.952072146 7.875383597 7.694343192 7.954519584 8.134142758 7.890177708 7.911586134 7.877591386 7.882027434 183218636 fnr Stress Oxygen stress Bifidobacterium animalis subsp. lactis HN019 7.880393411 7.55871351 254502713 SMR_antibiotics Antibiotic resistance transporter Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 7.457646649 7.076184157 7.268685731 7.015873757 7.513908864 6.983502727 7.62026461 254480921 sigma_70 Stress Sigma factors marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.854892522 7.761495679 7.617350606 7.542246226 7.722896857 7.544321953 7.553900137 7.610243114 146327858 phenol_oxidase Carbon cycling Carbon degradation Lignin Lentinus tigrinus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Lentinaceae;genus:Lentinus; 7.477793442 7.242998401 7.528930576 7.355226774 6.98128979 7.459616077 216744 ureC Nitrogen Ammonification Lactobacillus fermentum superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus; 7.16314711 7.355957039 7.197577285 6.891559027 7.520232264 6.845108433 7.392429301 158426153 CopA Metal Resistance Copper Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 7.570981585 7.409701215 7.408580735 7.288497468 7.631677745 7.878865995 7.433694245 7.371277512 7.61252589 255007838 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Bacteroides fragilis 3_1_12 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 7.634815984 7.473121917 7.238919168 6.831364188 7.25024106 7.545725636 7.556620724 6.9784823 7.456051881 90106602 pcc Carbon cycling Carbon fixation Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.835637358 7.529078697 7.292715542 7.764744363 7.941829059 7.68232556 7.467712113 7.789599448 37651313 dbdD Organic Remediation Aromatics Heterocyclic aromatics Xanthobacter polyaromaticivorans 8.212702231 8.082693509 8.041180736 8.500522532 7.996138296 8.403316047 8.661141795 8.422217301 218989000 phenol_oxidase Carbon cycling Carbon degradation Lignin Calocera viscosa superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Dacrymycetes;order:Dacrymycetales;family:Dacrymycetaceae;genus:Calocera; 8.121757483 8.721413863 8.315053265 8.06020226 8.343690454 8.187025085 8.240140416 8.236056823 62425567 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Brevibacterium linens BL2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium linens; 8.126776268 7.940938647 7.382087755 7.95088603 7.914340191 7.883846402 7.777149378 7.457593458 7.75275285 63029752 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.592598879 7.800969646 7.453178788 7.312876399 7.720123085 7.743918804 7.878443171 22003413 CopA Metal Resistance Copper Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.082649324 7.953549781 8.053830226 7.616148019 7.510978113 7.835757453 7.816800875 7.702550244 124497680 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 7.524199759 7.357842571 7.323347725 7.347734519 7.274283796 7.639657255 7.220912759 7.453179289 7.719288096 259908168 phoA Stress Phosphate limitation Erwinia pyrifoliae Ep1/96 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia pyrifoliae; 7.478858758 7.323963092 7.511888809 7.152450711 7.158195843 7.765431325 7.552508778 7.3398665 145702130 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Metallosphaera sedula DSM 5348 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Metallosphaera;species:Metallosphaera sedula; 7.576615478 7.422336143 7.17360569 15836075 obgE Stress Radiation stress Chlamydophila pneumoniae J138 superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Chlamydiaceae;genus:Chlamydophila;species:Chlamydophila pneumoniae; 7.210771775 7.301884231 7.366554888 6.887480319 6.888668528 7.540860076 7.412077517 7.195919558 7.507670917 254361256 pstA Stress Phosphate limitation Mannheimia haemolytica PHL213 7.28891707 7.258586774 7.001547022 6.952546702 7.026920735 7.063446477 111152764 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 8.133177044 8.015034747 7.775491861 7.87086632 8.189074846 8.011127303 8.19710497 7.593956377 8.01576955 7649293 pcaG Organic Remediation Aromatics Other aromatics alpha proteobacterium Y3F superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 7.140460472 7.278266467 7.442238905 7.149920992 6.887780029 219951822 fnr Stress Oxygen stress Methylobacterium nodulans ORS 2060 7.533461516 7.538145816 7.428773063 7.445018816 7.384404329 7.76430913 7.759854284 7.581016368 7.726306199 119490056 fnr Stress Oxygen stress Lyngbya sp. PCC 8106 7.492454294 7.384009057 7.704239902 6.885986244 7.330899599 7.782907305 7.386615745 7.197561357 7.466071345 56809531 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.347050702 7.237421846 7.210684943 134099390 dehH Organic Remediation Chlorinated solvents Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 7.967364773 8.377564225 8.041117276 8.003672817 8.434875512 8.109368772 8.428804313 8.333991058 8.176485633 118717987 CadA Metal Resistance Cadmium Burkholderia multivorans ATCC 17616 7.602675514 7.597313746 7.608671052 7.551357106 7.689106331 8.163617377 7.928366744 7.692531094 15232559 mer Metal Resistance Mercury Arabidopsis thaliana superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Streptophyta;order:Brassicales;family:Brassicaceae;genus:Arabidopsis; 7.43055933 7.816100435 8.027679724 8.069212424 7.674111022 8.146434738 7.491896631 7.992324974 7.799356817 126434044 arsB Metal Resistance Arsenic Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.289949393 7.330838389 7.302526341 7.042545916 7.255149681 7.445410212 7.072331661 7.402055801 27530056 gyrB other category gyrB Legionella hackeliae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella; 7.822200922 7.423336303 7.533391669 7.275759597 7.605769759 7.907651205 7.710357736 7.463642469 7.510214981 184194700 mhpC Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.751022404 8.257766673 7.811885259 7.407231961 7.70471191 7.7405268 7.741064555 7.661293086 8.15997354 33237955 ahpC Stress Oxygen stress Prochlorococcus marinus subsp. marinus str. CCMP1375 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 7.821254553 7.479456521 7.378452222 7.454457015 7.35226729 7.925980107 7.312192803 7.19499618 126319653 ArsC Metal Resistance Arsenic Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.435891743 8.323254787 8.15878157 8.371865585 8.417869852 8.451640185 8.415563626 8.304756019 7.816319945 188028172 sigma_24 Stress Sigma factors Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 7.140479217 7.306553501 7.107325767 6.976267388 6.820378476 7.434763977 7.395042397 7.314366562 222106291 nmoA Organic Remediation Aromatics Nitoaromatics Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 7.502798672 7.199725413 7.451734347 7.096549238 7.495813346 7.177458719 7.575568971 260899850 type_III_secretion virulence secretion Vibrio parahaemolyticus AQ4037 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.009133922 7.196715973 7.151682933 6.717535444 7.064138472 7.724929834 7.242976479 7.171741417 7.495686223 134093752 pstB Stress Phosphate limitation Herminiimonas arsenicoxydans 6.913673617 7.098685086 6.861034872 6.667613541 7.128025578 91690047 tphB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.961105759 7.661234781 7.724215894 8.125701461 7.751519169 7.735919857 7.456514237 8.001528799 149825711 pcc Carbon cycling Carbon fixation Limnobacter sp. MED105 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 7.320253442 7.382742045 7.341280987 7.560454891 7.65448671 7.574676744 7.35032058 239831802 SMR_antibiotics Antibiotic resistance transporter Ochrobactrum intermedium LMG 3301 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 7.689347967 7.568593956 7.441847309 7.157751344 8.095386199 8.229514293 7.661287992 7.798856937 7.734785643 195537608 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.270936444 7.648090653 7.991291452 7.353455823 7.836275991 7.857466723 7.890790053 7.721938387 7.822060952 68164660 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.75710746 7.545934573 7.425889513 7.172094056 7.314967538 7.542167413 254439671 sigma_32 Stress Sigma factors Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 7.584740185 7.341903109 7.499669684 7.191660416 7.23712916 7.600205997 7.054703173 7.209110801 7.174996544 220903367 nrfA Nitrogen Dissimilatory N reduction Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 7.800473876 7.677564968 7.41923101 7.782418277 7.958830572 7.72800853 7.704425821 215470151 CopA Metal Resistance Copper Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 7.910202887 7.713844366 7.388450761 7.436864267 7.591310043 7.848802813 7.797410569 7.894631772 7.342887185 218549955 phoA Stress Phosphate limitation Escherichia fergusonii ATCC 35469 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia fergusonii; 7.78116166 7.928528945 7.447720604 7.467146888 7.883848525 7.852579441 8.036435051 7.731362544 7.774131343 160366283 sigma_24 Stress Sigma factors Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.838570061 7.73492313 7.950411811 8.047504805 8.009392883 8.068902574 8.140541655 7.773575994 154240552 mcrA Carbon cycling Methane Methane production Methanosalsum zhilinae superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosalsum; 7.323071701 7.383233205 7.297374786 6.769227992 7.149680805 7.445591111 7.059976259 7.415516325 6969422 mnp Carbon cycling Carbon degradation Lignin Bondarzewia montana 7.31258258 7.325262714 7.204964684 7.140133742 7.306095774 7.046772028 7.064383063 7.268362492 91794107 cytochrome Energy process Energy process Shewanella denitrificans OS217 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella denitrificans; 6.968554831 7.157653743 198268651 vanA Carbon cycling Carbon degradation Others Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 7.708348108 7.464000419 7.128763482 7.51337272 7.226580149 7.62984192 7.707679054 7.637566782 152981838 ChrA Metal Resistance Chromium Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 7.423820277 7.515151033 7.346031307 7.247885954 7.3332748 8.157550967 7.138554994 7.232403445 56678270 inv virulence invasion Ruegeria pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 7.385475777 7.911092589 7.736349915 8.214130529 7.765802106 8.486958877 7.800372187 8.027811167 206679801 CopA Metal Resistance Copper Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.752148004 7.326367448 6.972004314 7.168447609 7.515245774 7.615282737 7.360256129 7.488898424 3820521 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. RP007 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.200857405 7.947612721 7.494275917 7.284649549 7.165905294 7.325856055 87239943 carA Organic Remediation Aromatics Heterocyclic aromatics Nocardioides aromaticivorans superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 7.558986227 7.459012263 7.691064446 7.231145827 7.723126318 7.598337467 7.599810133 7.65872847 91777718 exaA Organic Remediation Chlorinated solvents Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.67771952 7.388640073 7.530192994 7.229739716 7.108758212 7.118593434 7.403780125 7.210432399 110340414 phoA Stress Phosphate limitation Chlorobium ferrooxidans DSM 13031 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium ferrooxidans; 7.240437672 7.17570666 7.195678999 224025217 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Bacteroides coprophilus DSM 18228 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides coprophilus; 7.075952162 7.330811696 7.224248116 6.911977166 6.92995031 7.498387538 7.374093606 6.91614627 7.508434606 92112931 katE Stress Oxygen stress Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 7.585535647 7.841005413 7.846568938 7.566993737 7.801014317 7.840151662 7.93670747 8.143821573 7.942136648 149913494 phn Organic Remediation Herbicides related compound Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.347865171 7.242982869 6.871118021 7.071895097 6.643789857 7.450729397 7.108312277 7.062644233 62512279 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.56664698 7.237969757 7.300134687 6.981624668 7.327633782 7.582547231 7.436183789 7.28974102 7.552585632 87199483 pimF Organic Remediation Aromatics Aromatic carboxylic acid Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 7.331041405 7.318321934 7.797305421 7.087174117 7.015284776 7.844085077 7.112757762 6.948443779 7.183506575 71733328 hly virulence hemolysin Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 7.485672904 7.571636905 7.43343856 6.698335683 7.202357842 7.321249268 7.083175104 184193009 TehB Metal Resistance Tellurium Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.400109549 7.472598787 7.255532079 7.20332661 7.466129225 6.939601141 7.36842474 226319865 pstC Stress Phosphate limitation Deinococcus deserti VCD115 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 8.313217026 8.110862694 8.306374177 7.833235313 8.402794151 8.044794757 8.11341552 8.443131951 8.13054905 52003582 glnA Stress Nitrogen limitation Bacillus licheniformis ATCC 14580 6.923403072 7.599379168 6.988848479 7.268807309 7.122920877 163706174 phtA Organic Remediation Aromatics Aromatic carboxylic acid Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 8.294436099 8.201009422 8.086862047 7.784934457 8.352010623 7.892375027 8.20338628 8.037633145 8.217065098 116251366 ppx Phosphorus Phosphorus utilization Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 6.990176965 6.672892656 7.574006568 94313583 sigma_70 Stress Sigma factors Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 7.837808501 7.833264728 7.788645861 7.80416501 7.335949351 7.781737274 7.55486945 7.843914974 91777802 proO Organic Remediation Aromatics Other aromatics Burkholderia xenovorans LB400 7.177364871 7.147407663 6.838587234 7.681129886 121535981 CopA Metal Resistance Copper Thermosinus carboxydivorans Nor1 7.990435406 7.905564008 7.562129233 7.912638871 7.996232024 7.753931858 7.652629963 7.588463552 28974750 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.431807737 7.270143064 7.306218054 6.887683028 7.477343145 7.696290156 105895289 iro virulence Burkholderia cenocepacia AU 1054 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 7.564103539 7.32696816 7.598685709 7.067778934 7.438008842 7.530812618 7.637710515 7.052805081 7.642641274 77973181 B_lactamase_A Antibiotic resistance Beta-lactamases Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 6.989530713 6.906675654 153004450 AceA Carbon cycling Carbon degradation others Anaeromyxobacter sp. Fw109-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 8.077957049 8.049109635 7.71913373 8.091406891 7.842441672 8.012644587 7.529889355 7.919615473 7.828102364 74419676 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Nitrobacter winogradskyi Nb-255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 7.455670887 7.538254749 7.58281123 7.286650595 7.635749434 7.645557409 7.588167846 7.641618331 7.519360163 118697686 tftH Organic Remediation Aromatics Chlorinated aromatics Burkholderia ambifaria MC40-6 7.695703342 7.54377056 7.75832765 8.179756778 8.014073154 8.137156777 8.351316954 7.920890668 145608694 katE Stress Oxygen stress Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 7.582308479 7.351445439 7.481045893 7.320394322 7.619338484 7.720969701 7.905463653 7.456514655 152973859 gyrB other category gyrB Bacillus cereus subsp. cytotoxis NVH 391-98 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cytotoxicus; 7.041294679 7.320748248 6.945709608 6.865463022 7.366412284 7.009991823 7.065153352 19912133 gyrB other category gyrB Flavobacterium ferrugineum superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;genus:Terrimonas; 7.518625073 7.340543812 7.114062294 7.182378106 6.878917332 7.661853915 7.201695642 7.020828131 7.025703897 253996087 fnr Stress Oxygen stress Methylotenera mobilis JLW8 7.220855607 7.139651501 7.036619517 253984395 gyrB other category gyrB Methylovorus sp. SIP3-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylovorus; 7.55819658 7.831051803 7.574648295 7.469203423 7.655572331 7.518614505 7.420809016 110637908 CusA Metal Resistance Copper Cytophaga hutchinsonii ATCC 33406 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Cytophaga;species:Cytophaga hutchinsonii; 7.100384591 6.946540366 227090449 srt virulence surface protein Lactobacillus hilgardii ATCC 8290 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus hilgardii; 7.190720663 6.858905177 7.090218495 154684859 nmoA Organic Remediation Aromatics Nitoaromatics Bacillus amyloliquefaciens FZB42 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 7.200208972 7.175486268 7.452253777 7.34233998 7.951108394 7.305204778 7.328827408 7.431217803 91796954 ChrA Metal Resistance Chromium Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 7.554452515 7.658426556 7.191118338 8.294288402 8.300695887 8.594017347 8.616781566 8.219022695 156446863 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.640720007 7.500652106 7.412368541 7.232568485 7.746009952 7.528699061 7.413831621 7.464587233 258546008 norB Nitrogen Denitrification Cardiobacterium hominis ATCC 15826 7.746065325 7.789539441 7.620947012 7.382677265 7.92538051 8.101480977 7.860672656 7.640506726 7.729123612 88815118 acetylglucosaminidase Carbon cycling Carbon degradation Chitin marine actinobacterium PHSC20C1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 7.338191207 8.039073467 121663856 pcpE Organic Remediation Herbicides related compound Rhizobium sp. MTP-10005 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 8.153257198 8.272563724 7.844677627 8.002993464 7.880340432 7.598796589 7.719164418 7.899323477 71914591 sigma_24 Stress Sigma factors Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 7.706521044 7.867570909 7.971409197 8.108740587 8.564138328 8.291863364 8.163905842 8.227165958 109452522 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6.909150212 7.346010885 7.216628949 116668780 arsB Metal Resistance Arsenic Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.528039148 7.697118552 7.788015468 7.338244061 7.653553899 7.582397848 7.399529682 7.501470039 7.520732013 15159029 glnA Stress Nitrogen limitation Agrobacterium tumefaciens str. C58 7.113313983 7.194755411 7.355963972 7.166044101 7.289099285 27377880 ZntA Metal Resistance Zinc Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.244021105 7.178356106 6.851242238 7.842810474 7.130270462 7.523917419 85068980 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.76606659 7.441182813 7.501660757 7.038203827 7.604697325 7.362373493 7.497400022 7.55709569 126360300 tomA Organic Remediation Aromatics BTEX and related aromatics Pseudomonas putida GB-1 7.855015689 7.964728339 8.041639663 7.974311982 8.058753718 8.226733573 7.692373536 8.086359993 7.755405539 92116413 katE Stress Oxygen stress Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 7.240771625 7.349478406 7.202323843 7.044193965 7.126107315 7.35246867 7.37311405 7.308883078 6.99927956 215450199 chnB Organic Remediation Other Hydrocarbons Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 7.949232712 7.76950168 7.941842968 7.51611996 7.662568393 7.525845601 7.678562119 7.42005382 157085173 phn Organic Remediation Herbicides related compound Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 7.633677366 7.432639829 7.107792238 7.553397626 7.402602917 7.412063085 7.290985643 7.155959181 32480607 gyrB other category gyrB Xylella fastidiosa superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xylella; 6.994034324 7.226267799 7.007163985 6.976955134 7.546223373 7.261816629 7.540820605 221639732 ureC Nitrogen Ammonification Rhodobacter sphaeroides KD131 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 8.193378705 7.808207884 7.903585783 7.840795914 7.675349176 7.732480084 7.631972342 7152049 cellobiase Carbon cycling Carbon degradation Cellulose Thermotoga neapolitana superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga; 7.953677617 7.700117027 7.675439065 7.701990364 8.007387053 8.232391253 7.860174026 7.693761411 197753311 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Vibrio cholerae AM-19226 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 7.51888583 7.423066878 7.202164532 7.357072376 7.471442023 7.75739611 7.315409315 7.500433296 40809658 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira; 7.446182133 7.32582447 7.382527224 6.995601001 7.130081476 7.610486252 7.330597709 7.292266593 119943731 ArsC Metal Resistance Arsenic Comamonas sp. CNB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 7.904492177 8.106459228 8.219374975 8.24619016 7.619788678 83716598 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Burkholderia thailandensis E264 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 7.983138525 7.985841044 8.057389333 8.260704257 8.235068776 8.411343103 8.551294513 8.53289797 8.33399222 68344813 ChrA Metal Resistance Chromium Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.537122639 8.44417008 8.487259619 8.320206903 8.846007685 8.51848732 8.444850485 9.008197726 8.30426935 77862460 mcrA Carbon cycling Methane Methane production uncultured archaeon superkingdom:Archaea; 6.765951891 7.296403523 7.128015184 7.17943639 7.488100128 71556195 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 7.736594809 7.572570324 7.399547886 7.544011469 7.614574729 7.594383093 7.48465585 7.771127754 7.501472098 194502399 silC Metal Resistance Silver Burkholderia pseudomallei 1655 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 7.865455967 7.475971555 7.710150931 7.862376879 7.793946406 7.538175682 7.684653679 7.768729536 56799023 catechol_B Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 7.385623941 7.442274018 7.378238711 74484332 akbF Organic Remediation Aromatics BTEX and related aromatics Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.306777673 7.696893965 7.484168249 7.95652445 7.754525426 8.178520715 7.908727911 7.687341237 7.604923716 170740931 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 7.65405423 7.432931563 7.35530148 7.073663823 7.175622652 7.908032593 7.484501954 7.617108357 118582209 LMO Carbon cycling Carbon degradation Others Enterobacter cowanii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 7.690567979 7.272397929 7.226098759 7.247384546 7.026072954 7.489487916 7.3523492 7.090671985 7.189901653 209549579 catB Organic Remediation Aromatics BTEX and related aromatics Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.633818385 7.624039606 7.219094506 6.964945859 7.652650291 7.539929419 7.318321667 7.54972813 7.288056088 218886000 mer Metal Resistance Mercury Desulfovibrio vulgaris str. 'Miyazaki F' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 7.500540635 7.340761868 7.617727412 7.278798871 7.29515846 7.907618956 7.351275405 7.60823712 7.531486474 154353867 katE Stress Oxygen stress Bacillus amyloliquefaciens FZB42 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 7.1597592 7.141561983 58616711 ZntA Metal Resistance Zinc Achromobacter xylosoxidans 7.518808395 7.644903706 7.70381274 7.105881787 7.504326797 7.767036959 7.353633512 46200784 ppx Phosphorus Phosphorus utilization Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 7.472494401 7.323084329 7.301810945 7.300680215 7.63967454 7.223574776 7.113981596 7.619620707 121495610 narG Nitrogen Denitrification uncultured bacterium 7.357527214 7.223457082 7.262774998 7.415497579 7.386862476 7.038056074 7.264587709 7.286362931 109649337 rd Organic Remediation Chlorinated solvents Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 7.331855282 7.114460696 7.30788699 7.23891237 7.097222939 7.579585735 7.357537271 7.332457602 114048172 cytochrome Energy process Energy process Shewanella sp. MR-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 7.065082592 7.053730502 6.909609294 6.88418488 7.220982358 33148714 fnr Stress Oxygen stress Haemophilus ducreyi 35000HP 7.82972276 7.657374146 7.762566741 7.554514452 7.317809251 7.797254741 17546838 atzB Organic Remediation Herbicides related compound Ralstonia solanacearum GMI1000 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 7.148502251 7.404429746 7.653083303 7.579291553 6.77953811 7.798471547 77378511 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.620946744 7.177826774 7.287638436 7.239942946 7.270574818 109699475 vanA Carbon cycling Carbon degradation Others Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 7.360529608 7.435953453 7.38872891 6.953054609 7.66024427 7.343850072 7.03546684 7.556784014 49238567 glnA Stress Nitrogen limitation Bartonella henselae str. Houston-1 7.788554694 7.704549518 7.369746525 7.130835133 6.973773001 7.533557252 7.293568599 7.238215818 22295327 cydA Stress Oxygen limitation Thermosynechococcus elongatus BP-1 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Thermosynechococcus;species:Thermosynechococcus elongatus; 7.578884908 7.290614431 7.486807227 7.605599814 7.279793742 7.562311583 7.110026685 7.452463207 7.805990315 126623591 fnr Stress Oxygen stress Cyanothece sp. CCY0110 7.640512934 7.479596862 7.721359339 7.344308718 7.641963492 7.598881277 7.670448851 7.562423582 7.741609863 126742274 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 7.542800788 7.267956014 6.992107883 7.37755437 7.297310959 7.208264982 116512570 pstB Stress Phosphate limitation Lactococcus lactis subsp. cremoris SK11 7.121668843 7.223359646 7.144856044 7.256559916 7.094694838 66474607 gyrB other category gyrB Aeromonas sp. CCRC 13980 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas; 7.741102564 7.83485243 7.338853956 6.91442919 7.662932216 7.777589594 7.674447446 7.487697189 7.532684496 114707735 AmiE Organic Remediation Aromatics Other aromatics Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 7.771702859 7.616138756 7.524869292 7.339505679 8.063458911 8.22664263 7.747922676 7.517610642 7.968141719 32397746 katE Stress Oxygen stress Rhodopirellula baltica SH 1 7.484528866 7.531434948 7.892744004 7.219900686 7.374225865 7.638799231 7.374736148 7.585037512 7.221794543 16801062 endochitinase Carbon cycling Carbon degradation Chitin Listeria innocua Clip11262 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria innocua; 7.293881404 7.240919458 7.131467622 6.767930572 7.400743523 7.094421056 7.136928343 6.991150943 116743256 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.381830036 7.270979776 7.027696679 7.245843908 7.668885741 23094408 catB Organic Remediation Aromatics BTEX and related aromatics Rhodococcus opacus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.083112585 7.683098417 7.370281361 7.665656096 7.948901037 8.083381463 7.965176022 8.253142844 7.753873078 56910188 Al Metal Resistance Aluminum Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 7.385366537 7.21427034 7.580996603 7.562438404 7.192920862 7.189626122 7.129201076 7.142863291 85696472 iro virulence Nitrobacter sp. Nb-311A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter; 7.223416431 7.239511577 7.633469269 8.179422612 7.862883017 7.929714582 7.439171553 7.58849633 7.645102877 22299753 ZntA Metal Resistance Zinc Thermosynechococcus elongatus BP-1 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Thermosynechococcus;species:Thermosynechococcus elongatus; 7.917324869 7.725585449 7.974516554 7.901020361 7.462744536 7.76652969 7.565385096 7.945666543 146303141 related_thiosulfate_gene Bioleaching Sulphur Metallosphaera sedula DSM 5348 8.12179206 7.879876749 7.814157603 7.511557419 7.561533851 7.548052095 7.745956039 229556574 proV Stress Osmotic stress Listeria grayi DSM 20601 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria grayi; 7.347569654 7.267487094 7.464564482 7.596481347 83840593 ahpC Stress Oxygen stress Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 7.435601317 7.628971127 7.973216293 7.692505666 7.716532382 7.952545997 7.566411227 7.840786146 7.844288323 197712952 sigma_70 Stress Sigma factors Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 7.50223653 7.774426025 7.42536498 7.464827524 7.301878037 7.453314667 268312270 glnA Stress Nitrogen limitation Thermomonospora curvata DSM 43183 7.175804278 7.058309492 34500119 gyrB other category gyrB Edwardsiella tarda superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella; 7.922160981 8.004951842 7.61400575 8.001049444 7.903632728 8.248160777 7.821162167 33326786 pimF Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. CIB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 7.7287732 7.365952912 7.736331633 7.640334132 6.918697795 7.375758867 7.389108725 126035155 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.77521186 7.624542244 7.629430317 7.52459365 7.823510096 7.597739359 7.379572157 10640442 sulfide_quinone_reductase Bioleaching Sulphur Thermoplasma acidophilum 7.397633217 7.3038079 7.013362887 7.491455543 91696731 bclA Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 7.354866966 7.433103071 7.580267149 7.77408757 7.209167195 7.548053254 7.274860747 170123170 CopA Metal Resistance Copper Escherichia albertii TW07627 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 7.528751239 7.454002101 7.456628917 7.641649828 7.677497892 7.474101314 7.449651991 7.582918703 33243151 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.431306027 7.467239336 7.1798395 7.164347725 7.577447933 7.756869385 7.502607804 7.57691061 7.741210408 83592239 tutFDG Organic Remediation Aromatics BTEX and related aromatics Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 7.787576009 7.377012559 7.458781239 7.619073095 7.619680068 7.388452389 91189862 colonization_factor virulence colonization factor Vibrio alginolyticus 12G01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 7.671617179 7.403607824 7.431777146 7.604690751 29652500 narG Nitrogen Denitrification uncultured bacterium 9.567501592 9.779690305 8.374444097 8.736186986 8.987936962 9.241168481 9.296594927 8.794960238 163731510 pulA Carbon cycling Carbon degradation Starch Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 8.098687449 7.86142684 7.28015638 8.049840454 7.42496917 7.890384313 7.770823375 254438411 phoB Stress Phosphate limitation Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 7.333293936 7.941891046 7.989780005 8.169014932 6.847281707 8.49277476 7.422841066 7.432208459 7.637196597 167623180 sigma_24 Stress Sigma factors Shewanella halifaxensis HAW-EB4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella halifaxensis; 7.190569096 7.016511031 46450071 ahpC Stress Oxygen stress Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 7.741765962 8.032431198 7.723161125 7.546431849 8.521030803 7.813880684 8.134449072 8.180900826 7.996267072 225874570 nirA Nitrogen Assimilatory N reduction Acidobacterium capsulatum ATCC 51196 7.394248741 7.260823823 7.43166733 7.324370356 7.416526648 7.777018512 7.461922482 7.417724549 7.38044377 69154038 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.308109154 8.202103769 8.055700249 8.372404317 8.575709083 8.271648207 8.44663435 8.444111584 7.747578481 169649837 iro virulence Burkholderia pseudomallei S13 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 8.347140359 8.168928619 7.985608066 8.32779671 8.421560933 8.324031741 8.406442918 8.122252745 8.144682757 121553870 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 7.215102393 7.192481784 7.470607204 7.155138625 7.427744021 7.71903577 7.745683075 7.541585403 88706663 BchY other category chlorophyllide reductase Congregibacter litoralis KT71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 7.490707433 7.59082629 7.297808751 1167515 nitA Organic Remediation Aromatics Other aromatics Pseudomonas stutzeri superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.491722672 7.493905745 7.484148383 8.465483143 7.547249767 8.422142665 7.745332538 8.055967764 6729162 gyrB other category gyrB Dactylosporangium matsuzakiense superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Dactylosporangium; 7.696870844 7.5016998 7.582251241 7.661478698 7.767757588 7.763685167 32895118 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.142822216 7.350736299 7.222816218 7.143592259 6.491005594 7.405302991 6.868280771 7.655111522 94495206 bphA Organic Remediation Aromatics Polycyclic aromatics Sphingomonas sp. SKA58 7.574495849 7.401765525 7.318775654 7.523664258 7.568825074 7.922408072 7.783720602 7.30339235 7.574148991 34732933 terminase_small_subunit Bacteria phage REPLICATION Bacteriophage 44RR2.8t order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.38579981 7.876873911 7.42845052 7.622014206 7.616705355 7.815283776 7.533381708 7.558031584 7.574348531 242810693 ara_fungi Carbon cycling Carbon degradation Hemicellulose Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 7.906274247 8.083464913 7.670297723 7.5208653 8.09107877 8.161409122 7.780585121 8.047048579 112379427 pcaG Organic Remediation Aromatics Other aromatics Rhodococcus equi superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7.695021233 7.424002356 7.204850476 7.381429644 7.462336884 7.779580391 7.706977446 7.821072964 7.90346799 146339619 sigma_24 Stress Sigma factors Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.877301193 7.950992363 8.285514318 7.387261053 8.02381176 7.876620647 8.184436585 223690081 phoB Stress Phosphate limitation Desulfobacterium autotrophicum HRM2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium;species:Desulfobacterium autotrophicum; 7.826111525 7.870879327 7.54284498 7.745485954 7.966776623 8.194488164 8.025453176 7.344607728 7.771481939 148262730 pcc Carbon cycling Carbon fixation Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 7.008849259 7.015865662 7.197979474 7.551555365 7.184435633 7.020718819 7.17421542 184201856 SMR_antibiotics Antibiotic resistance transporter Kocuria rhizophila DC2201 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 7.518602005 7.42596577 7.583940839 7.343533895 7.098091766 7.199375033 260459265 fnr Stress Oxygen stress Mesorhizobium opportunistum WSM2075 7.51835435 7.315022794 7.190265743 7.010054338 7.470752436 133902381 msmABCD Organic Remediation Others Afipia felis superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Afipia; 8.140520569 7.651763858 7.391224144 7.133807408 7.824436595 93005390 katE Stress Oxygen stress Psychrobacter cryohalolentis K5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter cryohalolentis; 7.161608151 7.094481287 6.989662688 6.665570281 7.723046055 261283228 ureC Nitrogen Ammonification Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.072670613 8.172250953 7.834486745 7.770033283 7.845963485 7.945558042 7.72514002 7.748380018 7.694316724 148262089 gyrB other category gyrB Geobacter uraniireducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 7.62007744 7.424555097 7.149559438 6.994729523 7.520010646 7.361692675 7.462761399 259048004 B_lactamase_C Antibiotic resistance Beta-lactamases Granulicatella adiacens ATCC 49175 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Carnobacteriaceae;genus:Granulicatella;species:Granulicatella adiacens; 7.039542056 6.963247916 7.019029897 18996281 alkB Organic Remediation Other Hydrocarbons Thalassolituus oleivorans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Thalassolituus; 7.616241746 7.64361613 7.57582929 7.017291165 7.357709716 7.680087689 7.224408454 7.743814006 7.329129933 262195310 fnr Stress Oxygen stress Haliangium ochraceum DSM 14365 7.754305018 7.796716712 7.566285547 7.592851994 7.92467161 7.708127496 7.865937724 7.427177646 7.785963846 149911668 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Moritella sp. PE36 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Moritellaceae;genus:Moritella; 7.247320522 7.041616582 7.205227815 6.869487054 7.081512859 7.439208088 228876528 bphF1 Organic Remediation Aromatics Polycyclic aromatics Nakamurella multipartita DSM 44233 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 7.815188185 7.740126598 7.875674398 7.437079726 7.797133057 7.924898738 7.620169006 7.912635065 251846158 cda Carbon cycling Carbon degradation Starch Paenibacillus sp. oral taxon 786 str. D14 7.766010578 7.912639556 7.792608378 7.491028454 8.108165422 8.210224055 8.082565834 7.936934762 8.082499068 116048302 nifH Nitrogen Nitrogen fixation uncultured soil bacterium superkingdom:Bacteria; 7.246500354 7.478333099 7.567670446 7.329444918 7.316292886 7.48004677 6.970330868 7.13209469 117995628 cda Carbon cycling Carbon degradation Starch Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 7.566276005 7.729237331 8.264662415 7.589162746 7.533574537 8.124184181 7.411429723 7.617589937 7.493630223 151422194 pstC Stress Phosphate limitation Nitratiruptor sp. SB155-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;genus:Nitratiruptor; 7.478788962 7.097258636 7.162805161 118467520 BADH Organic Remediation Aromatics Other aromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 7.683602876 7.070163213 7.608610511 6.936070687 7.933394895 194333589 dnaK Stress Heat shock Prosthecochloris aestuarii DSM 271 6.725639945 7.408183109 7.164064274 7.252550007 169860777 ChrA Metal Resistance Chromium Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 7.247362318 7.085314055 7.144162825 158109755 tfdA Organic Remediation Aromatics Chlorinated aromatics Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.298464842 7.851455639 7.633394275 8.053637194 8.105819854 8.245160581 7.784122458 7.692257306 98976950 nagI Organic Remediation Aromatics Aromatic carboxylic acid Sphingopyxis alaskensis RB2256 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 7.66235876 7.818306285 7.713701895 7.606603764 7.706423144 8.021071852 8.037021864 7.66866519 121716412 ara_fungi Carbon cycling Carbon degradation Hemicellulose Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7.260227087 7.023005859 198262978 ppk Phosphorus Phosphorus utilization gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.943470818 7.797460227 7.940759729 7.980904643 8.18017736 8.118986217 8.308600373 8.033999532 8.083323859 160936847 ppx Phosphorus Phosphorus utilization Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 7.409425219 7.129506951 7.860701158 7.062408494 7.737772992 87123464 Al Metal Resistance Aluminum Synechococcus sp. RS9917 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.923551233 7.993763649 7.832005979 7.60261796 7.75807556 7.922548782 7.78913914 7.49315848 7.382234401 188534413 ZitB Metal Resistance Zinc Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 7.249932538 7.604046353 7.400724255 7.013008511 7.042008322 7.434620404 7.349611004 6.97008638 7.077947425 113526831 alkK Organic Remediation Others Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.383824196 8.276194938 7.90113513 8.563876068 8.429769243 8.256548018 8.584301899 8.082795047 170142936 glnA Stress Nitrogen limitation Burkholderia graminis C4D1M 7.253636217 7.001832487 7.383767911 6.9853168 6.875490179 7.47749021 114772942 Arylest Organic Remediation Aromatics Other aromatics alpha proteobacterium HTCC2255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.001528535 7.093774433 6.843498406 6.784513744 7.468681492 119197001 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Coccidioides immitis RS superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides immitis; 7.182246681 7.024075533 15072990 AceB Carbon cycling Carbon degradation others Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 7.377733578 7.836392252 7.698545712 7.061193184 7.491128576 7.504690347 7.347502472 7.74665037 7.60149958 221236078 sigma_70 Stress Sigma factors Caulobacter crescentus NA1000 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 7.851744674 7.915222925 7.671206126 7.296481877 7.769240909 7.447673861 7.711142381 7.505113367 187918872 silC Metal Resistance Silver Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.382669634 7.947379602 7.880444486 6.789222383 113882717 pilin virulence pilin Synechococcus sp. CC9311 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.470340837 7.278783836 241773147 AceA Carbon cycling Carbon degradation others Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 8.040674882 7.848923723 7.892230082 7.723466109 8.452538861 8.08088645 8.305277658 7.888892084 8.181437527 164511893 B_lactamase Antibiotic resistance Beta-lactamases Pseudomonas aeruginosa superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.008470949 7.824467015 7.476845114 7.906731769 7.786882946 7.887556136 7.434433319 7.481902041 7.530550541 121710276 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7.832235861 7.658921663 7.552781883 7.242691311 7.477503806 7.601952029 170722742 CopA Metal Resistance Copper Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.602050517 7.589214638 7.491038655 7.635901063 7.78641058 7.573967113 7.434530456 7.458102984 91788312 linB Organic Remediation Pesticides related compound Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 7.601926414 7.412385205 7.628413037 7.349091373 7.838219952 6.920033617 7.233320672 7.227367269 126578001 nbaC Organic Remediation Aromatics Nitoaromatics Algoriphagus sp. PR1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cyclobacteriaceae;genus:Algoriphagus; 7.89922874 7.38826295 7.41201709 7.501693476 7.613973681 7.6934743 7.508721222 7.35250533 7.388359214 124023401 proV Stress Osmotic stress Prochlorococcus marinus str. MIT 9303 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 7.320889211 7.271772761 7.406689267 7.057061621 7.504495541 118589315 pstB Stress Phosphate limitation Stappia aggregata IAM 12614 7.141777871 7.189512333 7.399155295 7.25974381 7.189730958 7.330441513 7.639929059 7.90272215 89097435 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Bacillus sp. NRRL B-14911 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.172484106 7.100945765 7.37967542 7.185981235 7.739297988 7.43072539 7.338956035 7.578475394 148834894 gyrB other category gyrB Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 7.196875421 7.045845403 14251201 cytochrome_c4 Bioleaching Electron transport Acidithiobacillus ferrooxidans 7.424886434 7.502169514 7.173188864 7.432724979 7.636381755 7.328389144 7.633210016 218264004 SMR_antibiotics Antibiotic resistance transporter Parabacteroides johnsonii DSM 18315 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides johnsonii; 7.293297541 7.336708189 262184534 glnA Stress Nitrogen limitation Corynebacterium aurimucosum ATCC 700975 8.054954646 8.197269271 8.232297721 8.427426203 8.326804385 7.717778837 7.49776398 8.17723098 93352356 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.283711876 7.558883589 7.954365333 7.491388742 7.71188955 7.936664132 7.458012923 7.739938948 7.317364373 157679091 rubisco Carbon cycling Carbon fixation Acidithiobacillus ferrooxidans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus; 7.146605151 7.305457047 7.157289582 7.129309457 7.79802116 7.792386082 7.883270282 7.480921178 33415967 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.138168555 7.661185258 7.341953298 7.024062329 7.322140526 114307090 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Nitrosomonas eutropha C71 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas eutropha; 7.951577908 7.349883954 7.168045891 7.664372901 7.700860972 8.029216352 7.507806283 7.425395615 7.278610075 145965194 endochitinase Carbon cycling Carbon degradation Chitin Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 7.718178969 7.362643899 7.740759103 7.626605942 7.883830281 7.982627884 7.827976971 7.902930186 118006278 exaA Organic Remediation Chlorinated solvents Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 8.283437728 8.516131762 7.517214572 8.126499951 7.993623247 7.997431042 7.892954865 7.655853046 83720433 ZntA Metal Resistance Zinc Burkholderia thailandensis E264 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 7.403407163 7.304468434 7.527963172 7.756194893 7.440806078 8.185173715 7.046958557 7.565194853 7.316340172 262335694 sigma_24 Stress Sigma factors Rhodothermus marinus DSM 4252 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 7.79118158 8.024621132 7.820053596 8.247418666 8.328251726 8.606889842 8.455133691 8.360700388 8.449719492 89335326 hrcA Stress Heat shock Desulfitobacterium hafniense Y51 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 7.514919979 7.30565433 7.308578397 157803444 gyrB other category gyrB Rickettsia canadensis str. McKiel superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales;family:Rickettsiaceae;genus:Rickettsia;species:Rickettsia canadensis; 7.421384638 7.069867849 7.386644583 218174157 sigma_70 Stress Sigma factors Cyanothece sp. PCC 7424 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.184792512 6.86781565 6.820056565 1905759 isopullulanase Carbon cycling Carbon degradation Starch Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 8.026999827 8.153391078 8.11355405 8.08847465 7.942411233 8.228053493 7.587552257 7.962090667 7.679474474 66391732 Host_recognition_T4_type Bacteria phage HOST RECOGNITION/STRUCTURAL Enterobacteria phage RB43 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.419637191 7.376653732 7.29722874 7.1274626 7.180830706 7.572711615 7.334119798 7.354300958 83645085 CopA Metal Resistance Copper Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 8.161276673 8.100498568 7.732143971 7.685933125 7.871491325 7.944103955 7.949463561 7.809534558 8.1910294 71737488 Catechol Organic Remediation Aromatics Other aromatics Pseudomonas syringae pv. phaseolicola 1448A 8.807937879 8.591469529 8.217292305 8.733856993 8.358877436 8.591505531 8.436727887 8.420032243 8.439420681 215412921 SMR_antibiotics Antibiotic resistance transporter Mycobacterium tuberculosis 94_M4241A superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 8.128535019 7.871626509 7.487906506 7.576687748 7.647291783 7.78643106 7.74242902 7.371063727 227496573 ahpC Stress Oxygen stress Actinomyces urogenitalis DSM 15434 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces urogenitalis; 7.392931726 7.579128129 7.4548751 7.762097372 7.950238568 7.675548254 7.871638191 7.979729431 145229855 CopA Metal Resistance Copper Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.109513123 7.172196088 169631351 dnaK Stress Heat shock Mycobacterium abscessus 8.002594737 7.858095163 7.78076951 7.933699726 7.752097345 8.029788267 7.999535619 56809465 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.385512933 7.421593456 7.354643034 7.318081958 7.412526781 7.476279321 7.490162538 7.208092864 7.344071472 82703177 sigma_70 Stress Sigma factors Nitrosospira multiformis ATCC 25196 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira;species:Nitrosospira multiformis; 7.382300381 7.528190872 7.617685025 7.387048562 8.030276382 7.867626632 7.752806613 7.676206914 7.614343535 209537958 nmoA Organic Remediation Aromatics Nitoaromatics Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.519776516 7.275635777 7.574148577 7.607541665 7.159382158 7.677415311 7.331159583 7.244275953 7.376816333 154319868 tftH Organic Remediation Aromatics Chlorinated aromatics Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 8.109094039 7.727728617 7.631920819 7.488447294 7.413667876 7.870673004 7.438445232 7.185554039 78359103 Arylest Organic Remediation Aromatics Other aromatics Shewanella sp. PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 7.596880368 7.430392285 7.337665729 7.420931535 7.438948459 7.705028022 7.522094802 7.516685104 7.097160062 89097957 glnR Stress Nitrogen limitation Bacillus sp. NRRL B-14911 7.374892721 7.38630205 6.970089262 6.898615704 7.312647817 154162257 AceB Carbon cycling Carbon degradation others Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.591398578 8.092040893 7.842565589 8.293559076 8.491694948 8.566132612 8.573329881 8.023076405 188027687 SMR_antibiotics Antibiotic resistance transporter Erwinia tasmaniensis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia; 7.266418011 7.215243779 7.176422645 63257039 pstB Stress Phosphate limitation Pseudomonas syringae pv. syringae B728a 7.503930044 7.309534364 7.216873182 6.934315393 6.92254485 7.795288257 119897313 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 7.5308097 7.838374546 8.051555368 7.402089227 7.735349691 7.782615256 7.644748255 7.703718297 7.562028851 89160516 ChrA Metal Resistance Chromium Halothermothrix orenii H 168 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Halanaerobiales;family:Halanaerobiaceae;genus:Halothermothrix;species:Halothermothrix orenii; 7.65837444 7.60938935 7.352418657 7.222766173 7.419914771 7.243547257 7.000794718 7.357237407 150031640 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 8.134819697 7.984182546 7.59254614 7.996755017 7.728974573 8.055485699 8.159199397 7.784352428 7.997242681 224596364 sigma_70 Stress Sigma factors 'Nostoc azollae' 0708 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena azollae; 7.317606384 7.204226151 7.27607573 6.869111654 7.074831429 7.68454967 7.350736232 7.135316766 7.384205826 225082033 bphF1 Organic Remediation Aromatics Polycyclic aromatics marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.299860885 7.49242046 7.780712749 8.191434874 7.781718227 8.026158175 7.643892611 7.947434392 7.783809816 90020209 pulA Carbon cycling Carbon degradation Starch Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 7.63088439 7.376942577 7.127610968 7.412779019 6.874214445 7.123617902 6.964971702 7.098836851 74316890 APS_AprA Sulphur adenylylsulfate reductase Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 7.160097475 6.973651412 124605822 cda Carbon cycling Carbon degradation Starch Bacillus sp. BL-31 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.514912032 7.212705852 7.377869232 7.056220428 84778323 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.315847142 7.499343562 7.566318119 7.512460536 7.209226878 7.675731378 7.347640634 7.520659454 7.383766267 161617950 primase Bacteria phage REPLICATION Enterobacteria phage phiEcoM-GJ1 order:Caudovirales;family:Myoviridae; 7.798144792 7.252933451 7.001167797 7.260232742 7.598667117 6.899390181 7.668143045 32895102 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.456731035 7.448008707 7.494984138 7.517464735 7.640789658 7.871248631 7.608131384 7.755168726 7.76800847 119718479 pstB Stress Phosphate limitation Nocardioides sp. JS614 8.564124408 8.310533495 8.15505242 8.286386035 8.02367238 8.216738635 8.235464683 7.639440863 151583234 ChrA Metal Resistance Chromium Opitutaceae bacterium TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 8.036872739 7.634117903 7.663536101 7.439059125 7.662913259 7.983538902 7.780649483 7.701758703 7.566849732 3925401 norB Nitrogen Denitrification Pseudomonas sp. G-179 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae; 8.200049149 8.589914841 8.76402219 8.632204984 8.623773408 8.556889054 8.41776638 8.915694428 8.533841603 219678198 BchY other category chlorophyllide reductase gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.505252314 7.206365093 7.435124097 7.69156582 7.58038403 187919176 nitA Organic Remediation Aromatics Other aromatics Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.495178723 7.577184729 7.465906721 7.423425872 7.636516633 7.744529188 7.74088849 7.858614569 7.469469973 7839584 grpE Stress Heat shock Psychrobacter sp. St1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 7.489715564 7.885115954 7.489414526 7.099118072 7.512248431 7.305599735 7.434766249 152028816 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Anaeromyxobacter sp. Fw109-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 7.696437857 7.506920077 7.44694837 7.40153007 93358363 MFS_antibiotic Antibiotic resistance transporter Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.190089334 7.856016898 7.737720526 7.732298798 7.727674736 7.670543312 7.898848946 7.741192466 154183510 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.263053425 7.290176323 7.572126694 7.633923997 6.88254794 7.905172997 7.229447864 7.261647571 7.413107969 24985209 MFS_antibiotic Antibiotic resistance transporter Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.089267739 7.63341663 7.587899894 7.821954599 7.699454636 8.113326151 7.59818152 7.405161361 259507073 cda Carbon cycling Carbon degradation Starch Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 7.405676471 7.266855176 7.583022893 7.117122331 7.694470811 7.650764272 7.486414208 7.168703342 7.651188838 76577538 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.016448073 7.266356207 207087185 grpE Stress Heat shock beta proteobacterium KB13 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 7.034572676 7.252660572 6.893110578 6.926813051 6.891527821 6.71555208 145591441 dsrA Sulphur sulfite reductase Pyrobaculum arsenaticum DSM 13514 7.231596643 7.857810151 7.49738216 7.415540618 154158241 pstC Stress Phosphate limitation Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 7.748199687 7.530255337 7.377683392 7.531617935 7.941090678 7.500370669 7.125628172 7.398334516 17744106 nmoA Organic Remediation Aromatics Nitoaromatics Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.042403147 8.182698318 7.893334522 7.583357412 8.109797644 7.936560698 8.16679212 7.900256226 7.886191074 160344984 fnr Stress Oxygen stress Burkholderia multivorans ATCC 17616 7.869301348 7.534665047 7.738733956 7.629185883 8.010233515 8.030753778 7.954256185 7.910716063 227464944 obgE Stress Radiation stress Gardnerella vaginalis ATCC 14019 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Gardnerella;species:Gardnerella vaginalis; 7.16829952 6.901946671 7.273932758 6.869871649 6.749191412 7.211117952 6.882232123 6.866137194 22796204 nirS Nitrogen Denitrification gamma proteobacterium D4-14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.923927967 7.658589658 7.471514756 7.201746202 7.544069447 7.568080869 7.515867742 7.556204624 262034557 nplT Carbon cycling Carbon degradation Starch Vibrio cholerae CT 5369-93 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 7.398691846 7.349927057 6.835289647 7.27622243 7.484219198 7.257878751 7.13739716 254821327 amyA Carbon cycling Carbon degradation Starch Mycobacterium intracellulare ATCC 13950 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 8.120238843 8.21477618 7.968003806 7.947858582 8.072788292 7.976697126 8.089361501 7.635077663 17428766 alkK Organic Remediation Others Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 7.328940859 7.517448035 7.228077401 7.294024125 7.6814078 7.574009953 7.34407564 82617412 pstC Stress Phosphate limitation uncultured archaeon superkingdom:Archaea; 7.929364566 8.132596504 7.801809729 7.744977177 8.174693583 8.213520215 8.290341289 8.101284991 8.224409465 114189713 mhpA Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.119766304 7.196933284 7.334498666 6.467285346 6.853007877 7.237919325 7.023699131 56178612 arcA Stress Oxygen limitation Idiomarina loihiensis L2TR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina loihiensis; 7.281208031 7.58913467 7.67357863 7.624229666 7.579367812 7.703753373 7.640955132 7.437056814 7.522289794 95133718 CopA Metal Resistance Copper Desulfuromonas acetoxidans DSM 684 7.545743948 7.713894478 7.412753664 7.186958301 7.622272763 7.524562153 7.586857708 7.214790868 7.663821348 148838027 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 7.984132022 7.679826611 7.442628635 7.820668713 7.341235268 7.806918125 7.659390697 7.569475201 7.574697055 78213610 amyA Carbon cycling Carbon degradation Starch Synechococcus sp. CC9605 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.707917442 7.66484367 7.561882311 7.371034142 7.90276209 7.853902814 7.897373698 7.684740653 7.658639881 133776834 pstB Stress Phosphate limitation Collinsella aerofaciens ATCC 25986 7.271345498 7.314054513 7.587351501 7.442069865 7.258694668 7.415188212 7.386572358 7.149199772 88772734 mer Metal Resistance Mercury Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 7.301826342 7.103880978 6.940080503 86282896 B_lactamase_C Antibiotic resistance Beta-lactamases Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.240545769 6.746470233 7.718941002 7.243273627 7.568345893 7.851975131 7.424974272 7.577867473 7.282511687 145702445 NADH_ubiquinone_oxidoreductase Bioleaching Electron transport Metallosphaera sedula DSM 5348 7.796080494 7.718931121 7.726031785 6.710740263 7.535708191 7.658931732 7.708203622 7.566594886 161613470 amyA Carbon cycling Carbon degradation Starch Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 7.972789836 7.83715127 7.87905778 7.75764741 8.316698615 8.145814322 8.126126722 7.777190764 8.095252495 222106859 NirB Nitrogen Assimilatory N reduction Agrobacterium vitis S4 7.664859898 7.662073677 7.716540829 7.715521528 7.474339691 8.133211016 7.569348184 7.809340366 145221141 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 7.456629799 7.144881983 6.925871257 218762280 Tet Antibiotic resistance other Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 9.23203415 9.113329217 8.765740313 198038531 alkJ Organic Remediation Other Hydrocarbons Burkholderia cenocepacia J2315 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 7.811857521 8.273864431 8.027140979 7.775605336 8.180331058 8.165048462 7.937606395 7.886770501 118071406 ChrA Metal Resistance Chromium Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 7.204028405 7.33181708 73697288 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.618182215 7.350114225 7.16221348 7.114939265 7.264167105 144905819 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.366736793 8.181199986 8.171514733 8.226909519 8.138312967 8.51312193 266624870 sigma_24 Stress Sigma factors Clostridium hathewayi DSM 13479 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 6.951172761 7.624632689 7.648806266 7.316327753 7.596226647 7.718070298 7.146250038 7.646888439 239735885 amoA Nitrogen Nitrification superkingdom:Bacteria; 7.46364033 7.478716603 7.768168437 7.623874851 7.202172287 7.512691568 167654484 tutFDG Organic Remediation Aromatics BTEX and related aromatics Anaerostipes caccae DSM 14662 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Anaerostipes;species:Anaerostipes caccae; 7.924048842 7.875311682 7.324583404 124258312 alkK Organic Remediation Others Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 7.809804618 7.600239182 7.685708147 7.920223824 7.495575763 7.536944391 7.550354457 148835590 cap virulence capsule Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 6.841908927 7.012702053 196111718 vip virulence virulence protein Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 7.370470241 7.653660204 7.870053452 7.756426825 7.868399625 7.942024283 7.776209976 8.029765904 7.8573938 158433987 Al Metal Resistance Aluminum Eubacterium dolichum DSM 3991 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichi;order:Erysipelotrichales;family:Erysipelotrichaceae;species:Eubacterium dolichum; 7.06101584 6.845316875 7.190005836 77463126 fnr Stress Oxygen stress Rhodobacter sphaeroides 2.4.1 7.705590681 7.93085193 8.041555447 7.634740612 7.864120844 7.854922416 8.005848948 7.752650754 iegAssA1 AssA Carbon cycling Carbon degradation Others 7.649137514 7.358286516 7.640529871 7.296567354 7.660388428 154352606 pstB Stress Phosphate limitation Bacillus amyloliquefaciens FZB42 7.554078325 7.400986529 7.449560003 7.573168498 7.139046036 7.687340764 7.189509292 7.451959708 7.364542596 229159514 srt virulence surface protein Bacillus cereus R309803 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 7.279564965 6.933182747 7.001147579 6.873214253 7.21391902 157151219 gyrB other category gyrB Streptococcus gordonii str. Challis substr. CH1 7.435005351 7.424444984 7.092619624 7.500978648 239911170 pstB Stress Phosphate limitation Thermococcus gammatolerans EJ3 7.362437706 7.311171465 7.545358565 7.5426579 7.313169887 7.911514152 7.968790649 7.293387025 7.476137112 157846862 AceA Carbon cycling Carbon degradation others Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 7.226841275 7.179714379 7.266995927 7.240300739 119401753 BpH Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7.527896142 7.538823942 7.478428254 7.238839893 7.824663757 7.219064265 7.251994523 7.637957726 45644857 gyrB other category gyrB Pasteuria penetrans superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Pasteuriaceae;genus:Pasteuria; 7.714124677 7.295723053 6.952933774 7.385887585 7.622255007 7.060665937 7.44085348 87311019 phoB Stress Phosphate limitation Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 7.061996828 7.219985518 6.690351485 7.650614465 119512929 clpC Stress Protein stress Nodularia spumigena CCY9414 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nodularia;species:Nodularia spumigena; 7.495115979 7.254892591 7.309550781 7.005657735 7.317305855 7.711344906 7.14800273 6.911157729 7.333982016 121998601 pilin virulence pilin Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 8.508891966 8.327505233 8.310179594 8.307294855 8.832586985 8.537675575 8.449361599 8.097814916 8.432486839 88181165 xylanase Carbon cycling Carbon degradation Hemicellulose Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 7.878355053 7.570815791 7.789199672 7.537210821 7.698814706 7.657529147 7.638681658 7.494019662 223690997 hydrogenase Energy process Energy process Desulfobacterium autotrophicum HRM2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium;species:Desulfobacterium autotrophicum; 7.245369624 7.286525506 6.975335341 6.981918156 7.297625454 7.566799948 7.301619309 7.352996058 90198212 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 7.616743793 7.641799066 7.545107313 7.304178237 7.890658966 7.637060143 7.551489068 7.590623226 7.824463655 118030886 ALN Organic Remediation Others Burkholderia phymatum STM815 7.728016003 8.15260856 7.680981605 7.53515089 7.689595201 197118489 Arylest Organic Remediation Aromatics Other aromatics Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 7.381413151 7.336383148 7.523684464 7.14488258 7.501497 7.354462687 7.120352719 7.611399826 153796047 ChrA Metal Resistance Chromium Ruminococcus gnavus ATCC 29149 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus gnavus; 7.864142343 7.987201359 8.114767012 7.641110807 7.921757833 7.563454495 7.857843141 8.121895957 8.050859858 52348376 ArsC Metal Resistance Arsenic Bacillus licheniformis DSM 13 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 7.487988534 7.476441272 7.60530602 7.249889171 6.960513661 7.158562849 7.10928108 7.700195482 56461539 hly virulence hemolysin Idiomarina loihiensis L2TR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina loihiensis; 7.099145094 6.870915336 91075486 tutFDG Organic Remediation Aromatics BTEX and related aromatics Escherichia coli UTI89 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 7.411374551 7.302472146 6.998934533 260587106 phoB Stress Phosphate limitation Blautia hansenii DSM 20583 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Blautia;species:Blautia hansenii; 7.779973987 7.683330147 7.191771562 7.23022391 6.956464463 7.657725272 7.113931513 7.20667129 116069601 grpE Stress Heat shock Synechococcus sp. RS9916 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.447530728 7.196671408 7.367684272 7.371433684 6.97048217 74136897 phdCI Organic Remediation Aromatics Polycyclic aromatics Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 7.46964149 7.92040543 7.475354623 7.197861951 7.251317428 7.433053311 7.286104539 7.319303899 196156584 ahpF Stress Oxygen stress Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 7.388989468 7.316286086 84372461 mcrA Carbon cycling Methane Methane production Methanosphaera stadtmanae DSM 3091 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanobacteria;order:Methanobacteriales;family:Methanobacteriaceae;genus:Methanosphaera;species:Methanosphaera stadtmanae; 7.092738029 7.154231202 163731317 ppx Phosphorus Phosphorus utilization Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 7.509717959 7.381725758 7.282080319 6.965150557 7.211295693 7.86445337 7.804943958 7.64383784 7.622569555 253779098 pstB Stress Phosphate limitation Photorhabdus asymbiotica 7.476502094 7.313461819 7.058680307 7.082583683 7.227770852 7.462621142 89894672 aclB Carbon cycling Carbon fixation Desulfitobacterium hafniense Y51 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 7.985673534 7.69581487 7.547715777 7.690975928 7.335796873 7.87790548 7.673627961 7.727301572 7.418836586 167356568 nmoA Organic Remediation Aromatics Nitoaromatics Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.320051068 7.264298628 7.532501797 7.197858295 126720295 hrcA Stress Heat shock Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.392518696 7.079715122 114319792 fnr Stress Oxygen stress Alkalilimnicola ehrlichii MLHE-1 7.274233154 7.327824557 7.531277991 7.693139946 6.780088259 7.964509761 7.365265476 7.179258306 7.505990818 258561550 phoA Stress Phosphate limitation Corynebacterium genitalium ATCC 33030 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium genitalium; 7.602155995 7.592262791 7.402298098 7.266390438 7.080915906 7.717349162 7.567483551 7.067479633 110283816 ppx Phosphorus Phosphorus utilization Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 7.105590744 7.161658528 7.365034459 126657587 SmtA Metal Resistance Miscellaneous Cyanothece sp. CCY0110 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.161865845 7.167817431 7.326105846 6.600585998 7.361656502 77972828 AceA Carbon cycling Carbon degradation others Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 7.581014417 7.177947842 6.99865479 6.84854218 7.414756951 7.471349837 7.335495703 7.057505058 7.194347059 214037843 fnr Stress Oxygen stress marine gamma proteobacterium HTCC2148 7.592423819 7.836645213 7.544329504 7.713873368 7.692654352 7.874167932 7.694979608 8.052844523 7.562669591 221155764 ureC Nitrogen Ammonification Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 8.15997551 7.950440719 7.815386336 7.805913769 8.273323352 7.878400078 8.058115051 8.254214444 7.794079598 256372121 pcc Carbon cycling Carbon fixation Acidimicrobium ferrooxidans DSM 10331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Acidimicrobiales;family:Acidimicrobiaceae;genus:Acidimicrobium;species:Acidimicrobium ferrooxidans; 8.460534091 8.147109984 8.117546799 8.345099484 8.017935321 7.734685513 8.187665173 8.17789605 229536907 ahpC Stress Oxygen stress Planctomyces limnophilus DSM 3776 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces limnophilus; 7.340781193 7.305145112 7.138263481 6.830345082 7.219238993 7.29062812 6.788841488 6.799012451 7.253272605 111017389 alkK Organic Remediation Others Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7.592488793 7.40538299 7.449478721 7.498532166 7.571271406 10173829 obgE Stress Radiation stress Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 7.789085442 7.583305728 7.528614306 7.328526349 7.618815574 7.900319175 7.63435157 7.68776466 7.873949575 117993115 rubisco Carbon cycling Carbon fixation Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.609914498 7.820002047 7.786048987 7.348548439 7.199451123 7.845738302 7.549245849 7.479923074 7.492097436 255064526 sigma_32 Stress Sigma factors Nitrosomonas sp. AL212 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 7.044740368 6.954109658 88929302 gyrB other category gyrB Methanosaeta thermophila PT superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosaetaceae;genus:Methanosaeta;species:Methanosaeta thermophila; 7.940166783 7.706051352 7.230770031 7.796901725 7.510002234 7.870292844 7.498953384 7.260858425 7.72599697 84778337 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.887233859 7.62680011 7.251852442 7.130387085 7.531721683 7.811265759 7.685680627 7.290697393 7.369009426 118581087 pstS Stress Phosphate limitation Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 8.052033907 8.454236444 8.023374134 7.616054645 8.471599462 7.821268495 8.216292295 7.983135444 8.182672355 94555354 fnr Stress Oxygen stress Deinococcus geothermalis DSM 11300 7.530119814 7.640375126 7.485609505 7.595520387 7.937188321 7.904707131 7.824888507 7.855471089 7.917233475 190573551 pimF Organic Remediation Aromatics Aromatic carboxylic acid Stenotrophomonas maltophilia K279a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 7.776183609 7.609963107 7.266483009 7.51586087 7.675356569 237746894 obgE Stress Radiation stress Oxalobacter formigenes HOxBLS superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Oxalobacter;species:Oxalobacter formigenes; 7.767971312 7.815642111 7.857526181 7.495603004 7.566941383 7.786623575 7.584643417 113876697 pulA Carbon cycling Carbon degradation Starch Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 7.849554458 7.463402361 8.00885987 7.5320145 7.937839436 7.890424824 7.672059089 7.279244531 7.772426034 34482633 grpE Stress Heat shock Wolinella succinogenes superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Wolinella; 7.521008754 7.979962237 8.122403095 7.565675631 8.177863924 7.941977688 7.897989572 7.987466623 239587702 AceB Carbon cycling Carbon degradation others Ajellomyces dermatitidis SLH14081 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 7.496573422 7.840062861 8.01173637 7.692748719 7.575409884 8.208918549 7.355696694 7.532458816 7.593113941 82947898 aclB Carbon cycling Carbon fixation Magnetospirillum magneticum AMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 7.674339533 7.71671956 7.43345346 7.436326787 7.792753974 7.644052388 7.770428333 184193647 ahpC Stress Oxygen stress Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.461534254 7.380900088 7.231158358 6.58052306 7.299023062 7.633642103 7.351753199 7.254805872 7.632403658 169637593 Al Metal Resistance Aluminum Candidatus Desulforudis audaxviator MP104C superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Candidatus Desulforudis;species:Candidatus Desulforudis audaxviator; 7.592077714 7.092057198 7.319220807 7.064865841 6.775015403 127512768 ArsC Metal Resistance Arsenic Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 7.026018082 7.38760465 7.269276546 7.840418054 7.360848191 7.609880481 7.487223592 7.819508501 157082955 narI Stress Oxygen limitation Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 7.683412888 7.562146111 7.922921696 7.116418907 7.492586203 7.543565198 7.832651853 7.397587281 34017184 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.311359546 7.208549067 7.465323787 219998905 TehB Metal Resistance Tellurium Clostridium cellulolyticum H10 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium cellulolyticum; 7.22563361 6.959177502 146189640 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 8.15277908 8.289826096 8.098659819 7.438926408 8.156928819 7.862206025 8.254793086 8.296879121 8.069384505 90425733 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.668193594 7.363114094 7.274865815 7.822501031 7.38085323 8.131188625 7.416077261 7.364993455 7.385702199 269217246 glnA Stress Nitrogen limitation Slackia exigua ATCC 700122 8.096083376 7.963068763 7.611052287 7.283821129 8.299671486 7.872085391 7.747907254 7.558060619 8.291676524 166085386 nirA Nitrogen Assimilatory N reduction Microcystis aeruginosa NIES-843 7.2295452 7.001841694 7.002635881 7.177791222 6.785439311 258598025 amoA Nitrogen Nitrification superkingdom:Bacteria; 7.489332309 7.332190728 7.343490128 6.965788273 7.491304797 7.151005967 7.231575631 237804631 clpC Stress Protein stress Chlamydia trachomatis B/TZ1A828/OT superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Chlamydiaceae;genus:Chlamydia;species:Chlamydia trachomatis; 7.009343966 7.025112033 7.544833956 7.448192541 7.349040357 7.488100128 238586884 phenol_oxidase Carbon cycling Carbon degradation Lignin Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 7.680716765 7.407135539 7.656688524 7.059433306 7.191834427 50119818 iuc virulence aerobactin Pectobacterium atrosepticum SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 7.155445911 6.986823151 156532347 dmsA Organic Remediation Others Enterobacter sakazakii ATCC BAA-894 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 8.328220156 8.282988448 7.759766489 7.583890323 8.162187339 7.778130024 7.934968682 8.088118233 7.80483727 152029898 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Anaeromyxobacter sp. Fw109-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 7.37033874 7.448676897 7.563396479 83859451 sigma_70 Stress Sigma factors Oceanicaulis alexandrii HTCC2633 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis;species:Oceanicaulis alexandrii; 7.039165404 7.720858495 7.687684152 7.586445261 7.418825716 7.589026826 7.310228502 7.516854548 7.800235049 145243362 cellobiase Carbon cycling Carbon degradation Cellulose Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.145107151 7.325162625 7.355779597 7.165604561 7.178937812 7.461439832 7.140346472 7.267216365 7.230736756 113933112 CopA Metal Resistance Copper Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.131337993 8.25036924 8.251927236 8.141135919 8.542612348 8.293971628 8.258598923 8.368029921 133754619 phenol_oxidase Carbon cycling Carbon degradation Lignin Bovista sp. B356 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Lycoperdaceae;genus:Bovista; 7.613057895 7.444284074 7.631661196 7.089608941 7.670031022 7.894905303 7.508108971 7.853351317 145229913 xylG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.02838593 7.133569012 7.359139443 6.987703987 6.948192567 7.752156936 7.075583966 7.498508444 89205285 atzC Organic Remediation Herbicides related compound Bacillus weihenstephanensis KBAB4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus weihenstephanensis; 7.670864198 7.562692219 7.717725541 7.515184234 45386225 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 8.289861378 8.622244372 8.264084582 8.09975492 8.70812602 8.33215539 8.492508857 8.483591658 8.523811078 70989868 endochitinase Carbon cycling Carbon degradation Chitin Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 7.59395967 7.315875255 7.328150559 7.26963699 7.332801588 7.521462898 7.33460182 158434715 tutFDG Organic Remediation Aromatics BTEX and related aromatics Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 8.401618791 8.440723964 7.997739252 8.544235214 8.718197741 8.79054197 8.538128621 8.238576129 149189371 trzN Organic Remediation Herbicides related compound Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 8.232378255 8.289103881 8.133032794 7.2197949 7.703729647 7.818343551 7.901319657 237637084 amoA Nitrogen Nitrification superkingdom:Archaea; 7.131254034 7.059838879 7.202790616 6.571429179 7.313915551 89082217 AceB Carbon cycling Carbon degradation others Oceanospirillum sp. MED92 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Neptuniibacter; 7.533216388 7.794073813 7.994555544 7.578077335 8.170700397 7.856761449 8.019599287 7.911582384 7.719335012 170139878 ChrA Metal Resistance Chromium Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 7.701538479 7.40739068 7.618024941 7.146868305 7.826118603 7.764416748 7.577687158 7.566353045 7.899635844 118424310 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.25467942 7.959030159 7.620920702 7.526397056 7.445746111 7.60485631 7.25009168 7.497159366 7.448038171 118029371 Catechol Organic Remediation Aromatics Other aromatics Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.48363184 8.304236436 8.461729065 7.695147287 8.483948068 8.449703255 8.543449114 7.858697695 255936231 ara_fungi Carbon cycling Carbon degradation Hemicellulose Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 7.252560763 6.970852704 7.183441301 7.143899697 6.929484715 7.344769597 118468355 nbzB Organic Remediation Aromatics Nitoaromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 6.964485195 7.477466395 7.547085606 7.54540508 119773602 pilin virulence pilin Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 7.854589583 7.628887524 7.496876138 7.157040707 7.868353316 8.063684907 7.703929664 7.521978729 7.795852721 189207010 nagG Organic Remediation Aromatics Aromatic carboxylic acid Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7.132781584 7.310450267 7.203567189 7.750911756 7.762915931 7.626145483 7.633881938 7.497221078 7.890525456 260768730 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 7.95780679 8.095680017 8.043929071 7.402408652 7.756077573 7.733919184 7.798464345 7.977379945 227366104 fnr Stress Oxygen stress Chryseobacterium gleum ATCC 35910 7.307659878 6.930072458 7.03826327 150837612 nagI Organic Remediation Aromatics Aromatic carboxylic acid Marinomonas sp. MWYL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 7.901091422 7.861904262 7.147202405 7.882890487 7.621339238 7.52166282 7.52741813 7.775634662 227487267 fnr Stress Oxygen stress Corynebacterium glucuronolyticum ATCC 51867 7.662755654 7.894235995 7.968839926 7.582847231 8.311727071 7.456381346 8.003551173 7.96202476 8.092237992 91225283 CadA Metal Resistance Cadmium Vibrio alginolyticus 12G01 8.266187571 8.025154541 7.839533873 8.118615329 8.175607933 8.028936195 8.177345909 8.186581736 8.2978853 227490257 SMR_antibiotics Antibiotic resistance transporter Corynebacterium pseudogenitalium ATCC 33035 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium pseudogenitalium; 7.980749553 8.157824 8.282547249 7.354683972 8.071317557 7.892394477 7.84257034 8.140087511 47496797 xylG Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.424665292 7.065221206 88779000 xylA Carbon cycling Carbon degradation Hemicellulose Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 7.797886088 7.491212258 7.638209103 7.464055482 7.897759139 8.05803585 7.724886538 89512536 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.302490634 8.229028667 8.080629814 8.155048047 8.37681623 8.252273698 8.24927299 8.076025376 8.206365042 37925021 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.222928886 7.24064484 7.120916716 7.394136359 7.447866329 7.196636614 7.403338983 78222312 cytochrome Energy process Energy process Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 7.901506028 7.802262524 7.397352114 7.946667402 8.267878274 8.129061243 8.016297773 7.942212198 8.060634994 56566220 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.351174645 7.04726841 7.294767656 7.096130446 7.238329864 7.717340832 7.43360978 7.124965783 150848096 tfdA Organic Remediation Aromatics Chlorinated aromatics Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 6.939625024 6.630482293 7.04935028 6.663875805 148549512 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.028140814 7.512259554 7.443867387 7.450087769 6.863747465 7.617401204 7.272082374 7.213365676 7.340315005 254481825 sigma_38 Stress Sigma factors marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.035440296 7.001868028 7.200617504 163811769 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.779658538 7.427114505 7.505652324 7.618027368 7.508428193 8.042157472 7.688915386 7.37610932 7.513220321 118171880 xylXY Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 7.362027881 7.327028783 7.37247038 7.685858461 7.162163599 7.463386273 7.104969526 7.526453736 161379474 pimF Organic Remediation Aromatics Aromatic carboxylic acid Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 7.618282223 7.681191056 7.58441958 7.440978993 7.878881169 8.102952034 7.932667009 7.615793777 7.642893817 40063515 tfdA Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium 581 superkingdom:Bacteria; 7.437873171 7.720504932 8.02400901 7.678891177 7.412996308 8.167017551 7.519636005 7.463508443 9971299 gyrB other category gyrB Marinospirillum minutulum superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinospirillum; 7.431910869 7.356957743 7.43495234 7.48619122 7.242310297 7.536417141 7.341136874 7.536083299 84500086 ZntA Metal Resistance Zinc Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 7.560577951 7.947598745 8.143164777 8.689169858 7.627848615 8.667840145 7.644759635 7.894532232 8.138828619 126641402 PobA Organic Remediation Aromatics Aromatic carboxylic acid Acinetobacter baumannii ATCC 17978 6.983735762 6.769489094 7.290370125 171988829 amyA Carbon cycling Carbon degradation Starch Exiguobacterium sibiricum 255-15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 7.362823669 7.165329165 7.196170978 71066132 silC Metal Resistance Silver Psychrobacter arcticus 273-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter arcticus; 6.995145595 7.147331696 6.976781626 6.612449752 7.020169313 6.860250641 7.560158415 115259424 atzB Organic Remediation Herbicides related compound Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.000293244 7.694758737 8.036946542 114764716 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.749169827 7.580581596 7.645698034 7.22568036 7.541688234 7.910463251 7.474277095 7.531546926 7.67267221 228563474 SMR_antibiotics Antibiotic resistance transporter Dethiosulfovibrio peptidovorans DSM 11002 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Dethiosulfovibrio;species:Dethiosulfovibrio peptidovorans; 7.272477461 7.28517924 7.454317775 7.023737272 7.166209162 7.625760267 7.356404417 7.429887659 7.601650642 255691985 ara Carbon cycling Carbon degradation Hemicellulose Bacteroides finegoldii DSM 17565 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides finegoldii; 7.334575733 7.262655325 7.210455519 7.19289053 7.631372497 239801559 amyA Carbon cycling Carbon degradation Starch Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 7.432376127 7.635287737 7.736790586 8.106754972 7.643480062 7.677635913 7.671759701 7.570188273 219677776 sigma_24 Stress Sigma factors gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.646288409 7.632664888 7.842764265 7.935399885 7.61463362 7.612791157 7.487373758 161380940 pimF Organic Remediation Aromatics Aromatic carboxylic acid Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 7.606967458 7.678774544 7.867648645 7.758816395 7.42919637 8.072242858 7.560064555 7.656689461 7.279464814 213586602 amyA Carbon cycling Carbon degradation Starch Salmonella enterica subsp. enterica serovar Typhi str. E98-0664 7.495294994 7.25671001 119949354 pstS Stress Phosphate limitation Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 7.189582361 7.107764056 7.333151933 6.670982765 7.446705044 6.855865612 7.268667156 90201084 ZntA Metal Resistance Zinc Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.148827735 8.485736516 8.17203022 8.039957264 8.41744563 8.203226458 8.20959055 222543513 phytase Phosphorus Phosphorus utilization Citrobacter sp. Gc-8-a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter; 7.477249723 7.387488552 7.411705615 7.316068709 7.569693478 37548728 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.635303218 7.485962844 7.481964089 7.5341986 7.560639689 7.577759754 7.660783182 7.396128556 7.607530967 150025425 obgE Stress Radiation stress Flavobacterium psychrophilum JIP02/86 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium psychrophilum; 7.32142837 7.160777372 148837384 AceB Carbon cycling Carbon degradation others Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 8.352698993 8.483727629 8.60828918 8.226805658 8.550868495 8.317638941 8.59842318 8.51240422 7.987567129 17225097 nreB Metal Resistance Nickel Hafnia alvei superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Hafnia; 7.400447017 7.810252092 8.027226517 7.272428899 7.984599395 7.66808977 7.745786145 7.906857565 7.885093627 218547563 pilin virulence pilin Escherichia fergusonii ATCC 35469 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia fergusonii; 7.178368025 7.085310959 7.34948034 7.101003104 6.733017222 220927258 sigma_70 Stress Sigma factors Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 7.529451402 7.172524686 7.250419838 7.113688469 6.917396207 7.711865825 7.184607323 7.052920564 7.28870454 19909723 gyrB other category gyrB Aquaspirillum serpens superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Aquaspirillum; 6.820290425 7.401899597 84043113 Catechol Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 7.419257393 7.250770247 7.576039194 7.38149645 7.509165458 7.31191599 7.185447194 7.418249288 254173807 cydB Stress Oxygen limitation Thermococcus sp. AM4 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus; 7.718675744 7.59562582 7.661344886 7.606100773 7.837337035 7.792281324 7.881253513 7.994331484 3116018 vdh Carbon cycling Carbon degradation Others Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.565705733 7.439277908 7.731946337 7.238126951 7.706486711 7.346803823 7.576015572 7.363708516 114540803 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.23940049 7.379613643 7.542281527 6.959935864 6.989744304 7.745199878 118072564 Arylest Organic Remediation Aromatics Other aromatics Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 7.341429568 7.181504024 7.220797216 119396634 nitA Organic Remediation Aromatics Other aromatics Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7.452745404 7.260840613 7.10074257 6.866878902 162448142 pstS Stress Phosphate limitation Acholeplasma laidlawii PG-8A superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Acholeplasmatales;family:Acholeplasmataceae;genus:Acholeplasma;species:Acholeplasma laidlawii; 7.160003993 7.0705792 7.297829507 7.046782324 7.053100511 114339597 sigma_32 Stress Sigma factors Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 7.339276191 7.323481188 7.421639696 7.13305794 6.853944857 7.503893 7.115854107 7.350546916 7.647756119 114340746 pcc Carbon cycling Carbon fixation Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 7.614307136 7.540374098 8.203965335 7.990752626 7.421701141 8.400568579 7.093293449 7.206762054 18461102 phenol_oxidase Carbon cycling Carbon degradation Lignin Lentinula edodes superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Lentinula; 7.361311557 7.365238718 7.006133563 7.576686418 41397940 ppk Phosphorus Phosphorus utilization Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 8.378148747 8.188417708 7.948494344 8.384175239 8.235926384 7.982492472 7.922396669 7.72387363 7.989477075 148553249 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 7.345102133 7.293969006 7.67536772 6.983141684 7.214328587 7.244670691 7.162961479 6.901829932 51246689 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Desulfotalea psychrophila LSv54 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfotalea;species:Desulfotalea psychrophila; 7.747871761 7.578972197 7.370443286 7.164522374 6.979391465 7.690652546 227423608 sigma_24 Stress Sigma factors Denitrovibrio acetiphilus DSM 12809 superkingdom:Bacteria;phylum:Deferribacteres;class:Deferribacteres;order:Deferribacterales;family:Deferribacteraceae;genus:Denitrovibrio;species:Denitrovibrio acetiphilus; 7.477225313 7.109697008 77639324 xylA Carbon cycling Carbon degradation Hemicellulose Alkaliphilus metalliredigenes QYMF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus metalliredigens; 7.177746351 7.053281179 551954 nifH Nitrogen Nitrogen fixation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 7.831132231 7.648697516 7.20270915 7.44018923 7.223866616 7.610131989 7.263086843 7.134403567 76058085 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.867912224 7.553235423 7.541893911 7.259991466 7.721575765 7.790715955 7.712139616 7.384592096 7.705761907 206687839 fnr Stress Oxygen stress Rhodobacterales bacterium Y4I 7.589638264 7.695052722 7.411646017 7.331888372 7.8648461 7.821299241 7.678788323 7.489035758 221067861 TerC Metal Resistance Tellurium Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.297539309 6.993055458 7.098439523 7.015089167 7.384593038 108463091 ArsC Metal Resistance Arsenic Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 7.5758495 7.447231593 7.796359429 7.134109905 7.774212547 7.678534637 7.561540385 7.105973873 7.477953968 156631623 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 7.347275746 7.359293479 7.480538496 7.074451499 7.071693054 7.496342089 146262937 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.334271687 7.140961129 7.097613738 51244058 proV Stress Osmotic stress Desulfotalea psychrophila LSv54 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfotalea;species:Desulfotalea psychrophila; 7.416200452 7.470944955 7.647312537 7.110714665 7.335896772 7.564272545 7.23299996 7.260803708 7.534419102 223717667 dsrB Sulphur sulfite reductase Desulfotomaculum indicum superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 7.083284911 7.202290102 104304115 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7.517573551 7.234712809 7.502635335 217330333 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.632677119 7.606618651 7.72868376 7.61434537 8.294205054 7.903825689 8.198636394 8.233306305 7.854224612 259169800 pstB Stress Phosphate limitation Lactobacillus antri DSM 16041 7.632593159 7.651178534 7.251711527 6.799005711 7.354716173 7.880360786 7.119596501 7.148253904 7.755962843 251796206 sigma_24 Stress Sigma factors Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 6.998954096 6.927961445 209886489 alkK Organic Remediation Others Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 7.967597777 7.773055456 7.725416958 7.792795601 8.428671521 8.126097053 8.307657632 8.097134357 8.252948655 4633560 nosZ Nitrogen Denitrification uncultured bacterium 696W superkingdom:Bacteria; 7.976557416 8.113950293 7.682670666 8.309571488 8.168223844 8.140247611 8.169666771 8.171911555 7.926937039 162455526 sigma_70 Stress Sigma factors Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 7.621089153 7.53438658 7.339328501 6.990584337 7.233489297 7.352056895 83841429 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 7.14701347 7.518747976 7.545726346 7.645918114 7.082238143 7.86710567 7.119750788 7.380064879 7.803183041 52207940 BADH Organic Remediation Aromatics Other aromatics Sphingomonas sp. CHY-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.043291419 7.448030616 7.836069643 7.624146637 7.671481916 7.516642739 270281393 hly virulence hemolysin Pediococcus acidilactici 7_4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Pediococcus;species:Pediococcus acidilactici; 6.942251656 6.752702229 39997174 cytochrome Energy process Energy process Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 7.816620203 8.263297994 7.836742835 7.276609278 8.213005749 7.880556849 8.087348978 167034821 CopA Metal Resistance Copper Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.780024142 7.799554754 7.424773001 7.926814256 7.450939022 7.898341742 86135957 pstB Stress Phosphate limitation Roseobacter sp. MED193 7.467036977 7.283034219 7.324060596 7.141893099 7.444581767 7.52990001 7.493284126 7.131899078 7.289044833 145225966 CadA Metal Resistance Cadmium Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 7.876523989 8.310339713 7.671888969 7.363585421 7.603482924 7.956469917 7.743820669 7.539605864 7.909580303 227164357 xylA Carbon cycling Carbon degradation Hemicellulose Proteus mirabilis ATCC 29906 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 7.732717882 7.715259657 7.70399863 7.201227813 7.644951901 7.663028725 7.63889264 7.601017947 7.485581451 240247502 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.032457911 8.323860305 8.011572176 8.252973835 8.251827965 8.253558391 8.235709031 8.339223875 7.789631888 221736714 cap virulence capsule Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 7.728818255 7.590755131 7.7391337 7.195880315 7.714179446 7.764005457 7.836134168 7.725495755 7.698269896 227877396 bglH Stress Glucose limitation Lactobacillus crispatus JV-V01 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus crispatus; 7.731708059 7.807738598 7.641553374 7.617689975 7.966289645 7.999104591 7.774346288 7.789515296 84391108 obgE Stress Radiation stress Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 7.635937565 7.39555036 7.39094061 7.583853299 7.818992638 7.409418917 7.331198004 7.420372165 49530380 pstB Stress Phosphate limitation Acinetobacter sp. ADP1 7.045805688 7.146259961 7.289900511 6.7360106 7.435134865 170745435 pstB Stress Phosphate limitation Methylobacterium radiotolerans JCM 2831 7.92006286 7.989284394 7.648395272 7.567838848 7.974261092 8.09378394 7.968192552 7.640854235 7.992894748 227355923 ppx Phosphorus Phosphorus utilization Proteus mirabilis ATCC 29906 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 7.617533911 7.44128642 7.299340873 7.218776459 7.112762393 258514636 sigma_24 Stress Sigma factors Desulfotomaculum acetoxidans DSM 771 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum acetoxidans; 7.322124848 7.184227074 7.513010384 7.299213988 7.562355965 7.371107097 7.191447218 7.822107175 149376271 pcaG Organic Remediation Aromatics Other aromatics Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 8.142610578 8.028036424 7.850118641 7.064572556 7.898753944 7.76158342 7.3607312 7.21776575 7.891464773 253997930 ahpF Stress Oxygen stress Methylovorus sp. SIP3-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylovorus; 7.690253586 7.417218842 7.368519404 7.259171671 7.64044913 224965063 sigma_38 Stress Sigma factors Erwinia pyrifoliae Ep1/96 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia pyrifoliae; 7.473019144 7.516871253 7.553929163 7.502426192 7.333801847 7.43629621 7.203326727 161386855 ahpC Stress Oxygen stress Phaeobacter gallaeciensis BS107 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 8.167595442 8.223750651 8.074819487 7.871555486 8.31510804 8.185929628 8.273857183 8.229230794 8.283899875 225175079 grpE Stress Heat shock Dethiobacter alkaliphilus AHT 1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Syntrophomonadaceae;genus:Dethiobacter;species:Dethiobacter alkaliphilus; 7.237121608 7.44132376 7.509445277 8.009238245 6.985799724 7.358448678 7.672440604 106767694 dsrB Sulphur sulfite reductase Clostridium phytofermentans ISDg 6.989400581 7.173708543 7.007007933 27351985 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.524245704 8.150792918 7.251095019 170694415 MFS_antibiotic Antibiotic resistance transporter Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 7.570448987 7.565744523 7.64671114 7.383064745 7.939701125 7.939454333 7.918486295 8.083866146 88779525 endochitinase Carbon cycling Carbon degradation Chitin Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 6.921213921 7.224685286 7.425339666 4995049 groEL Stress Heat shock Tannerella forsythensis superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Tannerella; 7.25081009 7.241050037 7.519824977 7.481948543 7.548273321 212536985 BpH Organic Remediation Aromatics Aromatic carboxylic acid Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.302161166 7.103049377 7.284453346 6.954400111 7.49378579 7.13885355 7.13270795 7.481915711 84372481 pstA Stress Phosphate limitation Methanosphaera stadtmanae DSM 3091 6.968572822 6.888053137 6.837984535 193224677 pimF Organic Remediation Aromatics Aromatic carboxylic acid Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 7.69535256 7.537610883 7.689338832 7.608223217 7.63429521 7.682662597 7.986050429 7.702834443 7.935230955 149277915 ChrA Metal Resistance Chromium Pedobacter sp. BAL39 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter; 7.22817257 6.91351358 7.340096927 7.220052696 7.307457365 187973584 cah Organic Remediation Others Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7.668581365 7.872929904 7.644172303 7.478759823 7.760912136 7.916755369 7.742109967 7.544903409 7.608797447 10580282 ZntA Metal Resistance Zinc Halobacterium sp. NRC-1 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halobacterium;species:Halobacterium salinarum; 7.715732412 8.048720435 7.851103672 8.050030134 7.746780675 8.088563313 7.616125045 7.814031056 7.232436768 115384324 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.302916238 7.348911174 7.172163566 7.027309464 7.194605884 7.262602364 7.206019197 7.251457571 151586430 CopA Metal Resistance Copper Halorubrum lacusprofundi ATCC 49239 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 7.12926294 6.888161103 161164727 sigma_32 Stress Sigma factors Sorangium cellulosum 'So ce 56' 7.606437193 7.54794998 7.489035687 7.339511558 7.3487618 7.48089387 7.529092805 7.497514158 151336975 endochitinase Carbon cycling Carbon degradation Chitin Thermoascus aurantiacus var. levisporus superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Thermoascus;species:Thermoascus aurantiacus; 6.79430518 7.093149591 83855126 CopA Metal Resistance Copper Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 7.157522368 7.160142343 7.410556661 7.4535843 7.356548072 7.760154098 157914018 CODH Carbon cycling Carbon fixation Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 7.368652835 7.598015199 iegcoxL22 CODH Carbon cycling Carbon fixation 7.092022899 7.256032828 7.337055873 7.322703558 110816088 pheA Organic Remediation Aromatics Other aromatics Alcaligenes faecalis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes; 7.678954299 7.387967622 7.430398987 7.034002011 7.308276517 7.50879964 7.308845828 7.266069105 67988159 pulA Carbon cycling Carbon degradation Starch Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 7.777723613 7.606113196 7.541180495 7.62936145 8.24215764 7.667404042 8.000535714 8.058894433 7.814390446 927237 bphC Organic Remediation Aromatics Polycyclic aromatics Rhodococcus sp. M5 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7.470382286 7.762779934 7.375077427 7.840314566 258521508 AceA Carbon cycling Carbon degradation others Corynebacterium genitalium ATCC 33030 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium genitalium; 6.998726068 7.265735128 7.076427567 7.439021427 7.213428128 7.015657529 89346577 sigma_70 Stress Sigma factors Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 7.97723587 8.046992314 7.898165354 7.779463393 8.301468994 7.977461372 8.184517414 8.076507828 7.877766059 8163341 ahpC Stress Oxygen stress Chlamydia muridarum Nigg superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Chlamydiaceae;genus:Chlamydia;species:Chlamydia muridarum; 8.583197317 8.231068703 8.020293104 8.415294764 8.312289715 8.746741194 8.606830697 8.746913773 8.201206043 83637289 sigma_24 Stress Sigma factors Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 7.203148947 7.335079651 7.368881546 7.292433091 6.944614156 7.444135494 6.78893542 7.232160358 269095210 fnr Stress Oxygen stress Veillonella parvula DSM 2008 7.335743415 7.203081432 7.161506545 6.940688295 6.962111986 7.575105263 7.083956955 7.167432379 251808705 fnr Stress Oxygen stress Gallionella ferruginea ES-2 6.823835156 7.695698542 189440601 ara Carbon cycling Carbon degradation Hemicellulose Bifidobacterium longum DJO10A superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 6.908954974 7.044283395 7.076143662 251799216 fnr Stress Oxygen stress Paenibacillus sp. JDR-2 7.385510949 7.658598197 7.365578773 6.936107773 7.25236401 7.256728006 7.242709146 7.547308086 20806552 gyrB other category gyrB Thermoanaerobacter tengcongensis MB4 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Thermoanaerobacter;species:Thermoanaerobacter tengcongensis; 7.255454514 7.324682243 7.665357809 7.813287431 7.153941069 7.995772572 7.207230372 7.393284282 7.213666951 91807158 nosZ Nitrogen Denitrification uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 7.295232155 7.226385199 7.162935727 6.919718777 7.383719662 7.230335364 7.377145053 151245 dehH109 Organic Remediation Chlorinated solvents superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 6.775753713 7.452143944 6.723579231 7.613033707 254788040 ureC Nitrogen Ammonification Teredinibacter turnerae T7901 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 7.278636877 7.266874948 7.33666258 6.81341965 7.466205294 7.267153967 7.208970855 7.285223698 94495741 pstA Stress Phosphate limitation Sphingomonas sp. SKA58 7.732998264 7.439955363 7.546837877 7.765698321 7.241472681 121533668 Al Metal Resistance Aluminum Thermosinus carboxydivorans Nor1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Thermosinus;species:Thermosinus carboxydivorans; 7.078154522 7.390004168 7.194472532 7.032063053 7.231133854 187479000 iro virulence Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 7.309193452 7.453430762 7.885086966 7.592091544 7.226574273 2980896 glucoamylase Carbon cycling Carbon degradation Starch Aspergillus oryzae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 7.579679044 6.940445311 7.125430867 7.425070664 7.737975868 187476771 obgE Stress Radiation stress Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 7.894062808 7.936427093 7.543679036 7.949937345 7.671997963 7.851624996 7.672314231 8.162066568 7.357729083 83025960 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 8.227785886 8.222084506 8.176750521 8.364724097 8.654150409 8.316399853 8.895040437 8.530911293 8.270909347 146403822 pnbA Organic Remediation Aromatics Nitoaromatics Bradyrhizobium sp. BTAi1 8.127250251 8.297030005 8.461598278 7.874149423 8.288260313 8.18613293 8.388677892 8.219035061 189420653 sigma_32 Stress Sigma factors Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 7.562586831 7.385282464 7.215397622 6.999407626 7.744643545 7.290240681 7.274640729 15964517 katE Stress Oxygen stress Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 8.220728496 8.062989451 7.713241827 7.916407242 8.257758371 8.06074197 7.934115236 7.654893716 7.834667879 242277888 fnr Stress Oxygen stress Desulfovibrio salexigens DSM 2638 7.458385497 7.244171307 7.064901748 10176661 ZntA Metal Resistance Zinc Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 7.181007825 7.317483422 7.218737735 6.973700581 6.952568494 7.304181706 88703004 nirA Nitrogen Assimilatory N reduction Mastigocladus laminosus W11D 7.28277939 7.089706256 7.127454982 6.989167015 7.523776271 7.02708759 6.892364302 7.063497232 72119144 CopA Metal Resistance Copper Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.984945323 8.173140684 7.959969471 8.225070391 8.141034669 8.083579203 8.056875984 7.925352077 91794040 phoB Stress Phosphate limitation Shewanella denitrificans OS217 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella denitrificans; 7.229692881 7.143560488 124377266 gyrB other category gyrB Aeromonas sharmana superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas; 8.046965731 7.651592453 7.854662263 7.325306791 7.934749829 7.266176877 158316098 tfdA Organic Remediation Aromatics Chlorinated aromatics Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.416260509 8.505124608 8.282836656 7.635739725 8.25197734 7.947528894 8.231890581 8.259143473 8.359007952 14719368 groEL Stress Heat shock Bifidobacterium denticolens superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Parascardovia; 7.732780298 7.427871264 7.469867056 7.48397824 7.458025294 7.469672168 7.821438933 7.931244083 226283525 katE Stress Oxygen stress Paracoccidioides brasiliensis Pb01 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides;species:Paracoccidioides brasiliensis; 8.33854403 8.405155451 8.30384828 7.906301014 7.965247754 8.504843465 7.714918024 7.840484107 8.284870471 187721667 dsrA Sulphur sulfite reductase Clostridium botulinum B str. Eklund 17B superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium botulinum; 7.350071602 7.40981338 7.042372046 6.926094455 7.023884412 7.584901913 85671622 proV Stress Osmotic stress Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.150844018 8.08009635 8.310873849 8.337305293 8.515789706 8.264237648 8.935559358 8.997337674 8.539453472 163736990 pstB Stress Phosphate limitation Phaeobacter gallaeciensis BS107 7.75759322 7.769132919 7.878386506 7.556831722 7.945288417 8.02987876 7.805060534 7.888917111 7.78340949 191164679 mer Metal Resistance Mercury Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.059672059 8.029970005 8.039770962 8.556135811 8.307425478 8.322183068 8.432843687 254502001 fnr Stress Oxygen stress Labrenzia alexandrii DFL-11 7.386088538 7.401020446 7.130867915 7.072695371 7.219600204 7.276099651 255333254 grpE Stress Heat shock Geobacillus sp. Y4.1MC1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.228567251 7.541851581 7.625478723 7.273534121 7.83129455 254229993 hly virulence hemolysin Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.786593153 8.153877363 7.7085648 7.80115368 8.044568526 7.838568636 7.697908793 7.567929716 7.900879928 221068205 ArsC Metal Resistance Arsenic Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.752339368 7.577669783 7.362353828 7.432641716 7.786963336 8.068033404 7.593637353 7.81720426 7.795015197 71278005 pstA Stress Phosphate limitation Colwellia psychrerythraea 34H 7.14971383 7.273410017 7.393165895 7.339738342 7.777432942 7.544076109 7.249704961 7.44417056 170027499 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.837176815 7.43839025 7.176978528 7.789334739 7.427729648 7.999663578 7.483464063 7.559343091 7.402829622 23393013 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.603987559 7.650179777 7.037783604 7.165112017 7.51114471 7.223600829 7.503620489 90440132 endochitinase Carbon cycling Carbon degradation Chitin Vibrio angustum S14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium angustum; 7.348557405 7.553772232 7.944281298 7.887849699 7.7304499 8.04729078 7.807200229 8.136160314 7.852316912 195541856 fnr Stress Oxygen stress uncultured bacterium 888 7.270129138 7.660716216 7.447932797 6.994855208 7.050611176 6.966137382 214045439 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.999462403 7.834102596 7.827591214 8.002945504 120435471 TerC Metal Resistance Tellurium Gramella forsetii KT0803 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Gramella;species:Gramella forsetii; 7.140014337 7.096234635 7.217493102 7.305799008 7.230543259 7.708178661 7.246752383 7.238616332 163663735 amyA Carbon cycling Carbon degradation Starch Methylobacterium extorquens PA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 7.368308604 7.247815024 7.297076938 7.474931635 119448500 AceB Carbon cycling Carbon degradation others marine gamma proteobacterium HTCC2143 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.539295317 7.036402248 6.866639946 7.05171041 7.409382199 7.178511701 7.170784019 114569749 sigma_24 Stress Sigma factors Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 7.863764429 7.515647618 7.382133781 7.631478925 7.377257486 7.575330893 7.233119786 7.252911563 255534890 obgE Stress Radiation stress Flavobacteriaceae bacterium 3519-10 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae; 7.648093192 7.290290957 7.854205505 7.88460114 7.668207295 8.269467838 8.189782224 7.66538301 146194009 nmoA Organic Remediation Aromatics Nitoaromatics Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.2320408 7.964303894 7.648412905 7.858490977 8.133548525 8.220208678 7.998023918 7.869454523 8.068807362 89097647 TerZ Metal Resistance Tellurium Bacillus sp. NRRL B-14911 7.323981859 7.270532349 229541510 pstA Stress Phosphate limitation Bacillus coagulans 36D1 6.736536462 6.569193104 7.234606394 33386644 glx Carbon cycling Carbon degradation Lignin Ustilago maydis superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Ustilaginomycetes;order:Ustilaginales;family:Ustilaginaceae;genus:Ustilago; 7.779409407 7.813326195 8.149505473 6.933329941 7.742612647 7.721402872 7.981083498 148848071 catB Organic Remediation Aromatics BTEX and related aromatics Planctomyces maris DSM 8797 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces maris; 6.964037352 6.884353756 7.326360796 6.752977208 7.249827745 59892266 nifH Nitrogen Nitrogen fixation uncultured forest soil bacterium superkingdom:Bacteria; 7.49267202 7.490270323 6.952441631 7.364237513 7.439003652 7.056183266 7.416483141 134095822 hrcA Stress Heat shock Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 7.402908031 7.600120216 7.540841842 7.41774087 7.203414844 7.529945928 206739004 obgE Stress Radiation stress Coprothermobacter proteolyticus DSM 5265 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermodesulfobiaceae;genus:Coprothermobacter;species:Coprothermobacter proteolyticus; 7.500548204 7.676507895 7.540980994 7.85650668 8.345148085 7.905456167 7.985028549 7.980090213 8.098951827 255304352 pstB Stress Phosphate limitation Acinetobacter radioresistens SK82 7.396910564 7.142569995 6.773977696 7.114299167 7.706821828 7.097342925 7.272677077 7.209837551 197777986 pulA Carbon cycling Carbon degradation Starch Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 8.262170692 7.573607724 7.562696468 7.599641016 7.661355314 8.138944754 7.396673069 90411501 katE Stress Oxygen stress Photobacterium profundum 3TCK superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 6.949476179 7.012626828 7.025635958 7.21863063 196193306 hrcA Stress Heat shock Alcanivorax sp. DG881 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 7.499171307 7.595081387 7.487095291 7.682569176 7.554278775 24372849 glnA Stress Nitrogen limitation Shewanella oneidensis MR-1 7.481597585 7.139854605 6.856563783 7.217925333 115500952 gyrB other category gyrB Pseudomonas nitroreducens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.549820824 7.138877158 7.281451315 7.452020404 7.555890818 7.186988449 7.424372734 37523738 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 7.799819763 7.749942387 7.487867448 7.443053841 7.648208452 8.03332052 7.663657462 7.753054292 7.366886381 149926107 phn Organic Remediation Herbicides related compound Limnobacter sp. MED105 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 8.301720014 8.447321456 8.188692201 8.372571295 8.347735905 8.31157557 8.316348793 8.228930697 190610542 DNA_polymerase_type_I Bacteria phage REPLICATION Mycobacterium phage Jasper order:Caudovirales;family:Siphoviridae; 7.763137388 7.73491565 7.853311284 7.05445466 7.77204941 7.826461436 7.421430694 7.76251767 7.587470097 76877098 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Pseudoalteromonas haloplanktis TAC125 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas haloplanktis; 7.764054664 8.18585313 7.565970172 7.133223765 7.62964154 7.501416766 7.612145005 7.666407229 7.46128043 157285710 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 8.069750886 7.736462577 7.42133237 7.88523334 7.955685737 8.200020458 7.476472155 7.394208191 7.44199465 186464946 alkK Organic Remediation Others Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 7.326413583 6.987123496 116624685 CadA Metal Resistance Cadmium Solibacter usitatus Ellin6076 6.87170017 7.089516404 6.664706292 7.306713501 247547205 ara Carbon cycling Carbon degradation Hemicellulose Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.253749546 7.4889156 7.469983633 7.139993118 6.976425716 7.218121257 7.339245162 170658341 chnB Organic Remediation Other Hydrocarbons Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 8.125071978 8.078791961 8.003164049 8.079097062 8.093250836 8.160817633 8.320726814 8.310275036 256715689 obgE Stress Radiation stress Lactobacillus coleohominis 101-4-CHN superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus coleohominis; 7.377886817 7.332394379 7.445149961 6.767660486 7.396721071 73538636 proV Stress Osmotic stress Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.50538362 7.607399192 8.01577237 7.630225399 7.434109611 7.253428747 7.359646227 83362464 nagK Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 7.931465499 8.136771702 7.934217041 7.886408326 8.03063343 7.660654503 7.964310678 7.955622781 7.793656699 55978106 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.159287954 7.145146682 7.207986082 212668885 catB Organic Remediation Aromatics BTEX and related aromatics Bacteroides finegoldii DSM 17565 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides finegoldii; 8.038166148 7.655656794 7.407390886 7.622130593 7.928571496 7.564358507 206676884 alkK Organic Remediation Others Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.963212915 7.600304138 7.740421231 7.543389918 7.884565679 7.840144488 7.73079297 7.946411035 7.909066811 226322862 pstB Stress Phosphate limitation Coprococcus comes ATCC 27758 7.252942839 7.560370778 7.260738862 6.922433564 7.434287612 78494567 rubisco Carbon cycling Carbon fixation Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.220140581 8.131632827 8.072054774 7.904622769 8.318955813 7.96479421 8.056601684 8.050799622 8.0334743 34103913 type_III_secretion virulence secretion Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 7.590387862 7.344382338 7.362506027 7.113761941 7.059560134 7.515517958 7.473605634 7.021033919 209539509 nmoA Organic Remediation Aromatics Nitoaromatics Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.937011498 7.752021648 7.631031522 7.888385016 8.487938677 8.082881656 8.079346093 7.738131579 7.88471761 77918272 pstB Stress Phosphate limitation Pelobacter carbinolicus DSM 2380 7.529028651 7.350763257 7.658987957 7.671058726 7.340654554 257066626 sigma_70 Stress Sigma factors Anaerococcus prevotii DSM 20548 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Anaerococcus;species:Anaerococcus prevotii; 7.166489088 7.073728824 7.090935925 6.729942832 7.445074094 212696393 tutFDG Organic Remediation Aromatics BTEX and related aromatics Anaerococcus hydrogenalis DSM 7454 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Anaerococcus;species:Anaerococcus hydrogenalis; 7.262822692 7.228059226 56680090 fnr Stress Oxygen stress Ruegeria pomeroyi DSS-3 7.865383365 7.99167215 7.710764995 7.715839559 8.092589843 7.9149415 7.789514137 7.829505236 8.039167119 74318642 rubisco Carbon cycling Carbon fixation Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 8.548103845 8.523953461 7.96371695 8.60949393 8.60324428 8.108928674 8.469432315 8.167334339 7.763819499 227295532 cda Carbon cycling Carbon degradation Starch Lactobacillus johnsonii NCC 533 7.338510095 7.025267989 7.103861536 86572122 ArsC Metal Resistance Arsenic Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.481481331 7.239384961 7.477868384 7.405059415 7.070891487 7.571737393 220714812 pilin virulence pilin Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.728343042 7.328212932 7.281116025 7.092203728 7.29102841 86359677 phoA Stress Phosphate limitation Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.583489849 7.544987639 7.593803751 7.618404587 7.537884535 8.048205126 7.50700825 7.573268449 7.660216177 114771444 AceB Carbon cycling Carbon degradation others alpha proteobacterium HTCC2255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.897483369 7.910045185 7.713936514 7.23954122 8.17377385 7.73344302 7.707529127 7.592083548 7.707162017 78518564 tftH Organic Remediation Aromatics Chlorinated aromatics Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.787972463 7.496818711 8.023436401 8.106161241 7.688113529 8.356926905 7.670482178 7.410519256 8.060339075 33600026 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bordetella bronchiseptica RB50 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella bronchiseptica; 7.824644043 7.925997513 7.408687926 7.19893569 7.595403084 7.756322639 7.504846522 7.755674001 38490070 pcaG Organic Remediation Aromatics Other aromatics marine alpha proteobacterium SE45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 7.51443634 7.521984019 7.366843795 7.062091333 6.995513195 7.64878281 7.417795736 7.18169785 159140747 cspA Stress Cold shock Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.403854496 7.494375474 7.359037943 7.284936554 7.855107636 7.773278554 7.785747939 7.780710617 7.839632801 114327641 CorC Metal Resistance Cobalt Granulibacter bethesdensis CGDNIH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 7.413453925 7.503211363 7.614076402 7.269074501 7.086005475 7.361324163 7.424850238 47680323 rubisco Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.813411887 7.796949811 7.361645174 7.793190592 7.704773737 8.36661332 7.551395218 7.75823458 7.669867669 116696414 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 7.482533335 7.918133383 7.347279894 7.2120444 7.694114422 7.578051579 7.489695275 7.480142804 7.391904081 159891982 cellobiase Carbon cycling Carbon degradation Cellulose Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 7.752429623 7.840255623 7.742824527 7.525706033 7.984492202 8.171533857 7.633244815 7.4961591 7.757976662 125498130 hly virulence hemolysin Streptococcus sanguinis SK36 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus sanguinis; 7.052603258 6.781380584 7.134305505 7.121150158 7.465427365 6.970767174 7.114135486 7.228262411 270044086 SMR_antibiotics Antibiotic resistance transporter Serratia odorifera 4Rx13 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia odorifera; 7.44224865 7.253190857 7.07048408 7.179251455 7.462470551 7.203399139 7.095470679 211905399 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.289586177 7.380237238 7.206154512 7.453571877 121553339 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 7.779704915 7.43767189 7.682872862 7.948461612 7.469231002 7.806225545 8.029349166 7.841946688 84667559 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.139514223 7.094624307 7.164992261 7.037791554 7.336487372 153011617 sigma_24 Stress Sigma factors Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 7.013201568 7.058950784 7.153313795 6.62860745 7.379883127 6.987584207 6.957440884 7.314497032 255113960 glnA Stress Nitrogen limitation Thermoanaerobacter italicus Ab9 6.7197167 6.959598783 163858870 ArsC Metal Resistance Arsenic Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 7.781755543 7.381838623 7.578523981 7.655861435 7.383047596 7.437145655 7.359781868 7.525812982 39997245 CopA Metal Resistance Copper Geobacter sulfurreducens PCA 7.386563585 7.324501094 7.545695906 7.977982336 7.54793481 7.546502198 7.663914756 7.738732782 7.775460105 119384104 AceA Carbon cycling Carbon degradation others Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.437941504 8.461449004 8.314689159 8.10396301 8.727748189 8.441961898 8.738925157 7.718658283 104345804 contractile_tail_sheath_protein Bacteria phage STRUCTURAL Aeromonas phage 25 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.341976556 7.090897874 148846486 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Planctomyces maris DSM 8797 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces maris; 6.737979985 7.426664235 34497063 hrcA Stress Heat shock Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 7.740271463 7.469448518 7.182812091 7.155991488 7.336083442 7.518884755 7.407479964 7.37481289 219558274 linB Organic Remediation Pesticides related compound Mycobacterium tuberculosis T17 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 7.515155112 7.536720031 7.593937043 7.066570015 7.500404782 7.383158718 7.272040954 7.159939804 7.549114674 116252072 pheA Organic Remediation Aromatics Other aromatics Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.931416411 7.494338046 7.301817738 7.557868207 7.598842699 7.35164619 7.304657516 118048540 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 7.93731624 7.980731906 7.85234652 8.009922391 8.275084526 8.270438172 8.150895722 7.88532356 8.0902353 228982770 obgE Stress Radiation stress Bacillus thuringiensis Bt407 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus thuringiensis; 7.235048259 6.996436704 6.982715848 119670680 akbD Organic Remediation Aromatics BTEX and related aromatics Azoarcus sp. BH72 7.710787976 7.557261791 7.475654023 6.972799743 7.362339476 7.660590034 7.185104017 7.256644326 7.136958023 158140321 CadA Metal Resistance Cadmium Alkaliphilus oremlandii OhILAs 7.466580353 7.580708347 7.523807888 7.39666516 7.766202264 7.833185733 7.652280202 7.630986267 7.714996103 110336200 TerC Metal Resistance Tellurium Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 7.258161367 7.16459925 6.937916551 7.097087465 6.815594905 7.521615584 78519221 pmdAB Organic Remediation Aromatics Others Bradyrhizobium sp. BTAi1 8.258953333 7.761038807 8.093440634 7.260467598 7.938585095 7.60132946 7.801016098 8.031445592 7.616028956 152070573 rubisco Carbon cycling Carbon fixation Beggiatoa sp. PS superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Beggiatoa; 7.623625448 7.828688289 7.316416235 7.193175064 7.474256819 7.269016659 7.512905321 268591646 SMR_antibiotics Antibiotic resistance transporter Providencia rettgeri DSM 1131 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rettgeri; 7.697744658 7.587465519 7.52467757 7.717484456 8.017719963 8.190821859 7.812319758 7.617119305 7.786880535 163838941 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Renibacterium salmoninarum ATCC 33209 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Renibacterium;species:Renibacterium salmoninarum; 7.167101889 7.08158564 7.006390044 71847948 Arylest Organic Remediation Aromatics Other aromatics Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 7.700183244 7.718686357 7.524287612 7.237361256 7.307384197 7.699558417 7.263078468 7.375663426 77544354 pstA Stress Phosphate limitation Pelobacter carbinolicus DSM 2380 7.617330588 7.222501004 219675550 sigma_32 Stress Sigma factors gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.780201613 7.498369901 7.830278163 8.149440662 7.764778759 7.721191581 7.536899083 7.51409915 160363978 iro virulence Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.373680163 7.470923341 7.392232888 7.463128298 7.492527775 7.864205948 530014 exoglucanase Carbon cycling Carbon degradation Cellulose Clostridium thermocellum superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 7.597502266 7.671614648 7.894012499 7.786244638 7.645066066 19352356 Mex Antibiotic resistance transporter uncultured bacterium superkingdom:Bacteria; 7.324514467 7.19603835 7.260589971 6.912498638 6.608278576 7.697478532 7.066696596 7.372466682 7.17314157 251794823 ABC_antibiotic_transporter Antibiotic resistance transporter Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.013504202 7.587421235 257453366 iro virulence Enhydrobacter aerosaccus SK60 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Enhydrobacter;species:Enhydrobacter aerosaccus; 7.243678915 7.337958271 6.986105322 6.666754587 6.86341017 7.404443914 91776929 sox Sulphur Sulphur oxidation Methylobacillus flagellatus KT superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 7.518506557 7.297394949 6.965063171 260219289 iuc virulence aerobactin Cronobacter turicensis z3032 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter turicensis; 7.989327723 7.371762253 7.43894766 7.602867139 7.692552901 7.953165474 227541253 xylA Carbon cycling Carbon degradation Hemicellulose Corynebacterium glucuronolyticum ATCC 51866 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glucuronolyticum; 7.835277083 7.682935908 7.444241301 7.861348671 7.828759791 7.649282169 7.74571704 7.774809129 59710887 obgE Stress Radiation stress Vibrio fischeri ES114 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Vibrio fischeri; 7.308439064 7.015834667 6.980909952 6.672095532 6.655144488 7.558214919 6.882097765 7.212684528 206575771 CusC Metal Resistance Copper Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 7.866221033 7.621183641 7.916943969 7.939974211 62512275 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.302425968 7.326860158 7.172880539 7.279699197 7.424596674 7.061816365 7.400876024 7.391880305 163801551 pilin virulence pilin Vibrio sp. AND4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.118816922 6.823446824 7.156908021 6.681660172 7.506597337 172039897 ppx Phosphorus Phosphorus utilization Corynebacterium urealyticum DSM 7109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium urealyticum; 7.619576528 7.418725636 7.486958226 7.144654613 7.669805124 7.641077106 7.239117557 7.464637526 157679407 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.614730355 7.193325545 7.087928545 7.567959201 108798185 SMR_antibiotics Antibiotic resistance transporter Mycobacterium sp. MCS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.919264243 7.669148796 7.502525294 7.974684895 7.616903872 7.496529536 7.373193477 7.818154177 163737661 fnr Stress Oxygen stress Phaeobacter gallaeciensis BS107 7.509296526 7.901691036 7.952924533 7.417482149 7.570024 8.24394566 8.186687035 8.738322079 109290017 helicase_family_4 Bacteria phage REPLICATION Aeromonas phage 25 7.43160192 7.293085177 7.438450632 7.025199796 7.534247449 7.410882428 7.52578139 7.608631907 41395021 pstB Stress Phosphate limitation Mycobacterium avium subsp. paratuberculosis K-10 7.817845449 7.778661171 7.577313326 7.56292162 8.246628109 8.403629817 7.943294106 8.036784443 7.946078402 112441448 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 7.699858614 7.566727748 7.447769127 7.564560448 21111333 HBH Organic Remediation Aromatics BTEX and related aromatics Xanthomonas campestris pv. campestris str. ATCC 33913 7.970283777 8.084520343 7.914579332 7.676336017 8.035913866 8.187571734 8.144129442 7.565874949 1001194 pstB Stress Phosphate limitation Synechocystis sp. PCC 6803 7.182752772 7.310596697 152980076 hrcA Stress Heat shock Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 7.187250097 7.311263238 7.347463876 7.26129547 6.834992712 7.654677388 7.650212582 7.245411745 7.574240036 214039575 ArsC Metal Resistance Arsenic marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.387050798 7.637629317 7.528080065 7.287898672 7.769735091 8.029369393 7.892104301 7.504641892 7.600379567 5689247 mhpA Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 7.031794757 7.660164428 7.519875037 7.283142996 7.460439657 146405852 proO Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. BTAi1 8.220483797 8.003580127 8.005953883 7.901368164 7.996310802 7.438632156 7.748380018 7.739185573 157406204 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 8.128446383 7.873561299 7.41622895 7.869634958 8.048469628 8.085269646 7.981484455 8.279156753 7.609002673 82703214 Catechol Organic Remediation Aromatics Other aromatics Nitrosospira multiformis ATCC 25196 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira;species:Nitrosospira multiformis; 7.112898266 6.833905961 7.009101381 50545986 alkK Organic Remediation Others Yarrowia lipolytica superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Dipodascaceae;genus:Yarrowia;species:Yarrowia lipolytica; 7.495053523 7.812055698 7.989813555 7.43120351 7.862342709 7.76396781 7.579064135 8.100556159 7.837788777 103488017 ArsC Metal Resistance Arsenic Sphingopyxis alaskensis RB2256 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 8.136530988 7.845676144 7.925599412 7.638487591 7.791094354 7.921002724 7.801386668 7.513618061 77378705 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.714683176 7.70992915 7.284656765 7.179808383 7.529163511 7.561401763 7.557989763 7.532476688 7.640734804 268161112 sigma_38 Stress Sigma factors Photobacterium damselae subsp. damselae CIP 102761 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium damselae; 7.087996661 7.205399821 260613681 amyA Carbon cycling Carbon degradation Starch Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 7.268395592 7.177356973 7.104580316 6.730332806 7.885340272 219547710 sigma_70 Stress Sigma factors Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.20952045 7.029882728 7.050040647 225194130 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.878751472 7.562635028 7.297519029 7.416434685 7.13989397 7.902517242 7.461539047 7.090421757 7.562372949 71065174 narJ Stress Oxygen limitation Psychrobacter arcticus 273-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter arcticus; 7.507484271 7.596243041 7.516836705 7.34998873 7.293091898 119641186 arhA Organic Remediation Aromatics Heterocyclic aromatics uncultured bacterium 7.477702907 7.12183258 6.990645954 7.481300045 238709649 AceB Carbon cycling Carbon degradation others Yersinia rohdei ATCC 43380 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia rohdei; 7.017178449 6.91852687 7.186349197 7.055217839 28971836 xylG Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas sp. P2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.194165189 7.94772302 7.696867639 8.163036934 8.253392133 8.015445017 7.881779963 7.948861406 7.63972615 189439635 ppx Phosphorus Phosphorus utilization Bifidobacterium longum DJO10A superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 7.392775613 7.250601975 7.129904646 7.087206362 7.529163761 6.967293233 7.248850956 211586052 chnB Organic Remediation Other Hydrocarbons Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 7.255351737 7.284063415 7.226707852 7.04536722 7.130811156 7.362926071 7.245155491 7.369361375 7.409144564 119391423 narG Nitrogen Denitrification uncultured bacterium 7.713848215 7.305175131 7.158622425 151422837 obgE Stress Radiation stress Nitratiruptor sp. SB155-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;genus:Nitratiruptor; 7.154299385 7.215507588 7.077894911 89512876 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.230237821 7.184630441 7.024360366 6.828127642 6.876922377 7.316427484 226714792 ahpC Stress Oxygen stress Laribacter hongkongensis HLHK9 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Laribacter;species:Laribacter hongkongensis; 7.638308389 7.61792372 7.404502898 7.853291363 7.700382668 7.729198693 7.729505351 7.506367206 144898158 gyrB other category gyrB Magnetospirillum gryphiswaldense MSR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 7.693211152 7.768305659 7.621203491 7.543423412 7.606371772 7.810162019 7.527094755 7.372473195 78486197 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Thiomicrospira crunogena XCL-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Thiomicrospira;species:Thiomicrospira crunogena; 6.997011202 6.769326304 7.53927386 6.670259374 7.107703956 113723905 PobA Organic Remediation Aromatics Aromatic carboxylic acid Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 7.682131899 7.755243808 7.340185623 7.180042267 7.653021798 7.644565388 7.415912439 7.135352213 7.39841002 118435092 phn Organic Remediation Herbicides related compound Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 7.592151946 7.706755172 7.601606841 7.094146249 7.219581616 7.419777659 7.451061621 7.271378505 7.849576783 260888715 ahpC Stress Oxygen stress Selenomonas sputigena ATCC 35185 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sputigena; 7.17455195 7.33999309 7.180178837 7.202250883 6.812245141 7.468381413 7.00675964 7.418509331 7.435129989 256830583 glnA Stress Nitrogen limitation Desulfomicrobium baculatum DSM 4028 7.450211029 7.622737778 7.601480713 7.368337156 7.809602291 7.715254382 218989048 phenol_oxidase Carbon cycling Carbon degradation Lignin Chalciporus piperatus 7.288094831 7.321369868 7.031777247 6.556413094 6.8318815 7.488949084 219550542 nasA Nitrogen Assimilatory N reduction Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.204156155 7.345532577 6.969504093 93277206 gyrB other category gyrB Streptomyces sp. MC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.345567712 8.448559876 8.139984204 8.302553654 8.682170253 8.49218152 8.257757024 8.20081354 94494957 silC Metal Resistance Silver Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 7.357266221 7.257993906 7.138344863 256587575 pstA Stress Phosphate limitation Saccharomonospora viridis DSM 43017 8.339745561 8.221450147 7.834400976 8.242262899 7.905407443 8.111733202 7.729662328 7.736869815 7.768738824 209515233 pheA Organic Remediation Aromatics Other aromatics Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.227263798 7.76926335 8.098475569 8.47480875 8.102737545 8.439725578 8.283855148 8.38400332 8.4244061 260606155 pstC Stress Phosphate limitation Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 7.117263473 7.598789796 7.415270967 6.993456474 6.979173658 7.48832769 7.1635201 7.149431267 7.523761714 112803449 CopA Metal Resistance Copper Campylobacter curvus 525.92 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter curvus; 7.465152438 7.451541302 7.484750271 7.582608113 7.339769778 222111706 pilin virulence pilin Diaphorobacter sp. TPSY superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax ebreus; 7.849023791 7.37861429 7.496924988 7.803884928 7.098723786 8.22670114 7.16259711 7.241992527 7.466972238 37525916 adpB Organic Remediation Pesticides related compound Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 7.169728541 7.516948147 6.866639946 7.563694038 237784707 bglP Stress Glucose limitation Corynebacterium kroppenstedtii DSM 44385 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium kroppenstedtii; 7.634595465 7.506592659 7.701123202 6.935888303 7.504069047 7.433578874 7.420325197 7.370948492 186474134 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 8.000114708 7.776118676 7.708326019 7.479555383 8.151258689 8.082389553 7.752130838 7.769291317 7.869992661 146298307 phoB Stress Phosphate limitation Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 7.199642725 7.200747215 251771709 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 8.57326622 8.366972525 8.312489436 8.189205908 8.328002207 8.526579908 8.792408227 8.093067071 108860569 gyrB other category gyrB Rhodococcus tukisamuensis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 6.924758178 7.205626881 7.409727447 7.284825054 6.891255634 7.864458082 7.151603716 7.299504504 119956956 atzA Organic Remediation Herbicides related compound Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 7.328716623 7.046099017 7.268675473 7.518580951 56178715 CopA Metal Resistance Copper Idiomarina loihiensis L2TR 6.958591411 7.245003218 7.001173557 86569439 hly virulence hemolysin Frankia sp. CcI3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 7.609293991 7.438342244 7.355925032 7.475575096 7.350361272 7.412630226 7.137919598 147886270 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 7.654822236 7.543037335 7.742336023 7.903889325 7.964103782 8.247913907 7.87248658 7.960229155 160860907 type_III_secretion virulence secretion Shewanella baltica OS195 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 7.516087598 7.411004066 7.277873224 7.055701619 7.683462828 7.78119903 7.535622556 7.563509912 7.469807859 111071920 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.690740598 7.673963597 7.522989191 7.59002588 7.61170955 7.915681925 7.694562037 7.619574006 7.569491415 210068999 amyA Carbon cycling Carbon degradation Starch Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.448150002 7.586224789 7.134223654 6.785636773 7.391628083 7.572550653 7.047300641 7.158200363 60476324 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.837277574 7.506304151 7.310312742 7.637238692 7.597364404 7.474844915 7.34219669 7.330534587 68007671 mer Metal Resistance Mercury Exiguobacterium sibiricum 255-15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 7.487810382 7.194138666 6.737391182 6.798327775 7.433621322 74317434 silC Metal Resistance Silver Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 7.832694777 7.834662512 8.015561845 7.586161194 7.833031731 7.995324841 7.808740317 8.108212671 7.540260149 253783155 oxyR Stress Oxygen stress Photorhabdus asymbiotica superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus; 7.257692044 6.990251812 7.913233212 7.136878618 7.228297278 7.714731587 121552786 fnr Stress Oxygen stress Verminephrobacter eiseniae EF01-2 7.492950485 7.451199765 7.132163659 7.30649655 7.695570407 7.421751421 7.297803514 7.500957706 194539944 CopA Metal Resistance Copper Vibrio sp. Ex25 7.674542391 7.057806917 7.013662037 89214408 nagG Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas alcaligenes superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.503727546 7.635374957 7.346122742 7.005428437 7.438004086 7.650269617 7.430202676 7.413120355 7.29201642 149807255 CadA Metal Resistance Cadmium Moritella sp. PE36 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Moritellaceae;genus:Moritella; 7.469609757 7.606985323 7.86598139 7.504879616 7.559584996 7.931672506 7.489988199 7.395599286 7.612682757 257219221 sliding_clamp_T4 Bacteria phage REPLICATION Deftia phage phiW-14 order:Caudovirales;family:Myoviridae; 7.942009885 7.654651937 7.644063733 7.37638387 7.531669792 7.710066568 7.467799093 7.162211229 7.297570594 167668963 ChrA Metal Resistance Chromium Anaerotruncus colihominis DSM 17241 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Anaerotruncus;species:Anaerotruncus colihominis; 7.608460467 7.340342214 7.345350376 7.386502625 7.816302525 7.773481639 7.296491928 7.37387545 113867764 xylC Organic Remediation Aromatics BTEX and related aromatics Ralstonia eutropha H16 7.319270042 7.471798995 255512649 fnr Stress Oxygen stress Clostridium carboxidivorans P7 7.058968864 7.057980882 6.551370133 7.22366162 32446173 pbrT Metal Resistance Lead Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 7.944569621 7.682974784 7.799817095 7.174766644 7.708888539 7.598665222 7.545150493 7.176284956 91790694 CopA Metal Resistance Copper Polaromonas sp. JS666 7.944503734 7.990224411 7.955335978 7.270746831 7.836142103 7.847766538 7.637882742 7.854746257 7.809767664 75674974 narI Stress Oxygen limitation Nitrobacter winogradskyi Nb-255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 7.509777465 7.127166249 169147787 pnbA Organic Remediation Aromatics Nitoaromatics Acinetobacter baumannii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 7.322493401 7.00865298 7.042650799 6.681225176 7.275623742 57116471 vanA Carbon cycling Carbon degradation Others Comamonas testosteroni superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 7.415958744 7.271023722 7.012057 6.746445908 37726841 dsrB Sulphur sulfite reductase uncultured prokaryote 7.504851692 7.714006673 7.4203229 7.171802835 7.21623285 7.477511385 7.484615717 7.477106257 189914821 alkK Organic Remediation Others Actinobacillus pleuropneumoniae serovar 7 str. AP76 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus pleuropneumoniae; 7.261260255 7.07128007 7.443946575 58000909 gyrB other category gyrB Gluconobacter oxydans 621H superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter oxydans; 7.531579606 7.736421024 7.570386396 7.502361394 7.594429114 8.053574675 7.4987357 7.402993865 7.455102245 73537725 pcc Carbon cycling Carbon fixation Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8.124999716 7.920884553 7.376339327 7.328539968 7.411981456 126667001 pilin virulence pilin Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 8.167913056 8.473261716 8.088227818 8.796010574 8.197868218 8.598917383 8.636152202 8.622417434 157837428 bphA Organic Remediation Aromatics Polycyclic aromatics Chromohalobacter sp. HS2 7.614379197 7.602318717 7.462537447 7.35696288 8.016328811 7.634155705 7.477499704 7.688716477 171059492 pstB Stress Phosphate limitation Leptothrix cholodnii SP-6 7.849772123 7.809724157 7.804934136 7.525691427 7.753220321 7.914320675 7.986390797 7.646488387 7.575172641 68240742 aclB Carbon cycling Carbon fixation Prosthecochloris aestuarii DSM 271 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Prosthecochloris;species:Prosthecochloris aestuarii; 7.643641727 7.547328776 7.511451649 6.998994739 7.447059625 7.824590521 7.500647307 7.393373288 7.427411716 142849900 gyrB other category gyrB Aeromonas salmonicida subsp. salmonicida A449 7.443282213 7.211427763 7.161621448 6.739730246 7.663285879 90021349 exochitinase Carbon cycling Carbon degradation Chitin Saccharophagus degradans 2-40 7.584536999 7.653103467 7.453474958 7.025781811 7.066474824 7.714496814 7.436619177 7.127434084 7.279849072 110932089 bphF1 Organic Remediation Aromatics Polycyclic aromatics Spirochaeta aurantia 7.504410737 7.437808639 7.773343462 7.614585885 7.565779566 8.026962497 7.804117796 7.853264758 7.637344815 39995776 cytochrome Energy process Energy process Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 7.801959972 7.739122328 7.706229686 7.671534277 7.741775536 8.061932264 7.744806502 7.501961507 7.302697736 121303633 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 7.088622265 7.148433788 7.253323279 6.89626242 7.022694528 158332545 phoB Stress Phosphate limitation Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 8.158605096 8.064112947 7.777737721 7.733066611 8.146084903 8.288267063 8.188654765 8.108684867 8.280393076 238704325 obgE Stress Radiation stress Yersinia aldovae ATCC 35236 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia aldovae; 7.522851783 7.423781239 7.373377762 7.189925293 7.363675131 7.835544654 114738505 alkK Organic Remediation Others Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 7.080869616 6.800517808 148850332 proV Stress Osmotic stress Bacillus sp. SG-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.581251906 7.43449685 7.40217567 7.589930002 7.390839517 7.4967477 7.799783026 134094868 narH Stress Oxygen limitation Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 8.027547101 7.813314761 7.754889834 7.83471245 7.830097736 7.928974439 7.8758244 7.758486475 7.531663337 114796121 helicase_family_4 Bacteria phage REPLICATION Escherichia coli bacteriophage rv5 order:Caudovirales;family:Myoviridae; 7.606636863 7.693239189 7.494376729 219666322 dsrB Sulphur sulfite reductase Desulfitobacterium hafniense DCB-2 7.25920334 7.386068009 7.86330991 7.54229409 7.594096109 7.953013069 7.775649923 7.858524278 7.957934283 227465719 srt virulence surface protein Gardnerella vaginalis ATCC 14019 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Gardnerella;species:Gardnerella vaginalis; 7.71499591 7.550348499 7.755283361 7.75536338 7.442839834 7.842892697 7.815204001 7.591934805 7.499895531 56381473 mer Metal Resistance Mercury Geobacillus kaustophilus HTA426 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus kaustophilus; 7.474234168 7.084075276 7.359530266 7.62166932 7.399331486 7.097063975 7.32902689 242208155 endochitinase Carbon cycling Carbon degradation Chitin Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 7.51717995 7.078886116 7.89242162 7.458883584 7.493139016 7.896951793 7.290411353 7.292910238 256005611 Tet Antibiotic resistance other Clostridium thermocellum DSM 2360 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 7.317362568 7.283903888 6.94155271 6.848172672 7.365697288 169828352 pimF Organic Remediation Aromatics Aromatic carboxylic acid Lysinibacillus sphaericus C3-41 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Lysinibacillus;species:Lysinibacillus sphaericus; 6.855593226 7.102077547 6.814024806 6.758704463 7.483264661 6.911761277 7.296619076 5042367 tfdA Organic Remediation Aromatics Chlorinated aromatics Pectobacterium carotovorum superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium; 7.387828331 7.564534367 6.856986139 7.016551926 7.392071641 7.185652897 237863424 narH Stress Oxygen limitation Veillonella dispar ATCC 17748 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Veillonella;species:Veillonella dispar; 8.010719599 7.504480272 116090714 endochitinase Carbon cycling Carbon degradation Chitin Bacillus thuringiensis serovar morrisoni superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus thuringiensis; 7.44279643 7.070567986 7.330714227 119467346 AceA Carbon cycling Carbon degradation others Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 7.719802108 7.600065027 7.328716064 7.350162744 7.346040642 7.888004291 7.419511334 7.214043059 7.461435535 151302358 AprA Sulphur adenylylsulfate reductase Desulfotomaculum halophilum 7.483181076 7.764893173 8.10149351 8.217087675 7.59836587 7.302775793 7.71977466 7.499137423 150376374 phn Organic Remediation Herbicides related compound Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 8.001861578 7.808501746 7.719519579 7.171594783 7.372853544 7.869446017 7.891206089 161323137 gyrB other category gyrB Kordia algicida OT-1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Kordia;species:Kordia algicida; 7.229049148 7.046111957 6.688949932 6.734850767 7.436709489 112462995 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.504026268 7.439527196 8.047187276 7.377733798 7.77450423 7.737399355 7.546532262 7.760859734 50880266 pmoA Carbon cycling Methane Methane oxidation uncultured methanotrophic alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 7.85165649 7.756610617 7.72287041 7.969191968 7.827303064 7.954190324 7.813861644 7.903270461 7.821125545 15458598 obgE Stress Radiation stress Streptococcus pneumoniae R6 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus pneumoniae; 7.159583406 7.095575083 7.026360863 6.660841908 7.463102995 169636911 katE Stress Oxygen stress Exiguobacterium sp. CNU020 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 7.917027822 7.538998893 7.857757463 7.473044623 7.929056929 7.805222409 7.706290083 7.74473421 13357983 hrcA Stress Heat shock Ureaplasma parvum serovar 3 str. ATCC 700970 superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Mycoplasmatales;family:Mycoplasmataceae;genus:Ureaplasma;species:Ureaplasma parvum; 6.972186719 7.034106021 261409476 sigma_24 Stress Sigma factors Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.639128348 8.271617749 7.792923652 7.269766399 7.578368459 7.825174144 7.151405315 163261607 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 7.675549337 7.877403287 7.078586027 7.852865093 7.755653079 7.75735958 7.904392816 3150227 pcc Carbon cycling Carbon fixation Mycobacterium leprae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.697453064 8.674205778 8.445117656 8.2667294 8.972437986 8.292043853 8.868278744 8.569810315 8.69060235 89275899 rubisco Carbon cycling Carbon fixation uncultured gamma proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.489386813 7.706141148 7.18147527 7.583453922 7.076427567 8.049906492 7.478211246 7.364387539 48963 xylanase Carbon cycling Carbon degradation Hemicellulose Butyrivibrio fibrisolvens superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Butyrivibrio; 7.297732523 7.083441889 226091827 ahpC Stress Oxygen stress Gemmatimonas aurantiaca T-27 superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 8.428369826 7.825095817 7.37904675 7.356723884 7.498411375 17429611 limEH Carbon cycling Carbon degradation Others Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 8.201080029 8.102177244 8.22144924 8.073996947 8.395006782 8.551214847 60493153 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Bacteroides fragilis NCTC 9343 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 7.410146388 7.542014737 7.298329947 7.364998076 23016694 glnA Stress Nitrogen limitation Magnetospirillum magnetotacticum MS-1 7.103226326 7.086484762 6.895731075 7.564542113 193077137 nmoA Organic Remediation Aromatics Nitoaromatics Acinetobacter baumannii ATCC 17978 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 7.059505208 7.020594158 6.684455268 7.204961617 15807661 TerZ Metal Resistance Tellurium Deinococcus radiodurans R1 7.453703886 7.271219396 7.773061912 7.3903168 7.701986584 7.225479926 7.213209929 7.405435983 30249287 pilin virulence pilin Nitrosomonas europaea ATCC 19718 7.371658753 7.174244331 7.168056816 6.777738828 7.442519844 7.093016288 7.459550371 126032295 endochitinase Carbon cycling Carbon degradation Chitin Hypocrea jecorina superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 7.493266721 7.410414372 7.238035123 7.413764975 7.350372286 7.79788629 7.372440508 7.3671675 7.445963772 257821818 fnr Stress Oxygen stress "Enterococcus faecium 1,231,501" 7.552887129 7.422880925 7.517796304 7.330439561 7.327055741 7.793962359 7.582777469 7.609189314 7.36101502 160362894 Catechol Organic Remediation Aromatics Other aromatics Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.860392978 7.839299738 7.938789867 7.228397141 7.970524452 7.707154425 7.610010324 8.073489975 179346509 scnABC Organic Remediation Others Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 7.552816831 7.588979428 7.680034673 7.382160432 7.931068447 7.938723584 7.907207322 7.435522075 7.689589366 150272190 hrcA Stress Heat shock Bacteroides capillosus ATCC 29799 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides capillosus; 7.572255944 7.438371035 7.679251568 7.024275937 7.278836714 7.424320595 7.748048734 7.368432397 91790992 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 7.924470234 7.456971503 7.69718338 7.705395306 7.649928984 7.413261306 7.597727495 160917418 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.080301298 7.784657614 7.506295158 8.077671316 8.037062059 7.733298401 7.972480436 7.593523204 148263433 TehB Metal Resistance Tellurium Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 7.762376637 7.921283573 240102262 pstS Stress Phosphate limitation Thermococcus gammatolerans EJ3 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus gammatolerans; 7.607396973 7.298812104 7.407353009 7.436065907 7.237854432 7.935163961 7.292521893 7.360871626 7.612513936 269964969 iro virulence Vibrio alginolyticus 40B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 7.607742042 7.383228089 7.111995437 6.903451865 6.932133725 7.562050453 7.404007891 7.156535977 7.036804959 6850955 ahpC Stress Oxygen stress Eubacterium acidaminophilum superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium; 6.945808207 6.681116456 6.974710246 6.758371488 7.292238318 6.801588284 6.79802625 161328003 AceA Carbon cycling Carbon degradation others Shewanella benthica KT99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella benthica; 7.620217033 7.619193951 7.579121985 7.536789641 7.580832742 7.750577791 7.607385872 7.680364713 7.706283301 21886622 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Thauera sp. DNT-1 7.414179958 7.399708888 7.743460437 6.962281328 7.561844298 7.560934645 7.509289401 7.630824302 7.412311843 119817732 vanA Carbon cycling Carbon degradation Others Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.391361652 7.358639704 7.412688907 7.453014325 170694038 pbrA Metal Resistance Lead Burkholderia graminis C4D1M 8.025105483 7.732012988 7.746181552 7.947402064 8.249361145 8.008242753 8.608669911 8.271012161 8.018246833 106773720 TerZ Metal Resistance Tellurium Clostridium sp. OhILAs superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus oremlandii; 7.744552506 8.060478359 7.812925295 7.333075405 8.088250511 8.009447446 7.945107167 7.589926012 7.75450359 194371820 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.412742619 7.340342002 7.738711956 7.521349453 6.96424158 7.885816005 7.363695946 7.316053915 7.507789771 198247639 MFS_antibiotic Antibiotic resistance transporter Acidithiobacillus ferrooxidans ATCC 53993 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 7.706311447 7.658386953 7.425988943 89070365 xylA Carbon cycling Carbon degradation Hemicellulose Oceanicola granulosus HTCC2516 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 7.795899837 7.752051695 7.715016382 7.597641314 7.736057381 85707639 sigma_32 Stress Sigma factors Erythrobacter sp. NAP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 7.426009405 7.412761 7.315462748 7.244461675 7.644827582 7.375273106 7.673166826 118053586 CadA Metal Resistance Cadmium Comamonas testosteroni KF-1 8.211407045 8.455326826 8.294059902 8.050145395 8.573926866 8.121988715 8.302029574 8.435578916 8.22477581 29466018 norB Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.005408958 7.686120236 7.821437777 7.718506817 7.364339762 149805612 aoxB Metal Resistance Arsenic Moritella sp. PE36 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Moritellaceae;genus:Moritella; 7.559512425 7.563321185 7.398982931 6.869796623 7.183516454 7.59070874 7.295525814 7.221456593 255060453 hrcA Stress Heat shock Geobacter sp. M18 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.176467341 7.736759647 7.436100214 7.417037251 7.401261657 7.705946547 7.630466757 7.535409304 7.681876508 151941766 BADH Organic Remediation Aromatics Other aromatics Saccharomyces cerevisiae YJM789 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Saccharomyces;species:Saccharomyces cerevisiae; 7.468921684 7.059816456 89202879 rubisco Carbon cycling Carbon fixation Bacillus cereus subsp. cytotoxis NVH 391-98 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cytotoxicus; 7.095727992 7.352860773 90821463 nplT Carbon cycling Carbon degradation Starch Lactobacillus salivarius subsp. salivarius UCC118 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus salivarius; 7.203441578 6.850131439 169759872 exaA Organic Remediation Chlorinated solvents Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.07232415 7.949140028 7.928488553 8.064315603 8.018955642 7.935767142 8.212847993 7.837076574 7.897262082 145221195 bphA Organic Remediation Aromatics Polycyclic aromatics Mycobacterium gilvum PYR-GCK 7.423437953 7.093303881 7.085376196 7.468743094 7.720282103 7.448699051 7.348360242 7.576898673 57016825 ZntA Metal Resistance Zinc Campylobacter upsaliensis RM3195 9.742471182 9.590151792 9.645031652 29337992 fnr Stress Oxygen stress Bacteroides thetaiotaomicron VPI-5482 7.557242941 7.424123534 7.343865523 7.542895061 7.501383874 262163699 sigma_32 Stress Sigma factors Vibrio mimicus VM223 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 6.798677832 7.013637104 6.953506436 6.689589107 7.279247838 7.090935226 7.029357274 74057608 sigma_24 Stress Sigma factors Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 7.826391223 7.855405807 7.738544854 7.748323972 7.810974214 7.882478767 7.988394361 7.903077197 7.420968648 134034496 mer Metal Resistance Mercury Dyella sp. Is-D136 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Dyella; 8.278598224 7.860019985 7.716730039 8.202010773 8.050676952 8.120050022 7.89750358 7.857999569 7.882513021 219939171 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.461730161 7.551339348 7.713088346 7.21997996 7.47157976 7.463776159 7.572583035 7.236497344 7.524026819 149190801 sigma_38 Stress Sigma factors Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 7.959114955 7.847662559 7.901558361 8.226870863 7.983224172 8.079290735 7.55151242 8.173441368 18147149 gyrB other category gyrB Marinobacterium georgiense superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacterium; 7.61720189 7.470782748 7.242194826 7.231127313 7.442032931 7.246311106 7.310394266 121533884 Al Metal Resistance Aluminum Thermosinus carboxydivorans Nor1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Thermosinus;species:Thermosinus carboxydivorans; 7.814619576 7.471467548 7.332968007 7.073480231 7.346446575 7.82043244 7.483370261 7.035838886 7.251255705 145219046 obgE Stress Radiation stress Prosthecochloris vibrioformis DSM 265 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeovibrioides; 7.380275504 7.502925556 7.607566466 7.420114925 7.045782415 7.828167729 7.626282176 7.51257944 7.333627483 256742562 pstB Stress Phosphate limitation Thiomonas intermedia K12 8.979246647 8.59503379 8.610004232 73661133 nrfA Nitrogen Dissimilatory N reduction Thioalkalivibrio nitratireducens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 8.542290909 8.410948165 8.207187742 7.932569343 7.821900476 7.885210846 7.856647821 8.021154644 217415130 atzA Organic Remediation Herbicides related compound Bifidobacterium angulatum DSM 20098 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium angulatum; 7.413229097 7.372438558 7.635546086 7.348519411 7.500266491 7.781326292 7.556041452 7.428721932 7.529814341 27351775 sox Sulphur Sulphur oxidation Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.104033304 8.381936667 8.181124532 7.862068755 8.509171822 8.251925585 8.182299916 8.114513668 7.911057433 126714081 pstB Stress Phosphate limitation Roseobacter sp. CCS2 7.78112851 7.621190462 7.822503013 7.797113259 7.342581125 7.700897594 7.385382421 7.536999905 7.403761753 78486299 CopA Metal Resistance Copper Thiomicrospira crunogena XCL-2 7.648631102 7.7533733 7.612903705 7.398560184 7.597970564 8.115053154 2258311 mmoX Carbon cycling Methane Methane oxidation Methylocella palustris superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella; 7.625274649 7.771290007 7.301197001 7.21576451 7.849164879 7.410781508 7.377431445 182679384 oxyR Stress Oxygen stress Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 8.127132483 7.884657175 7.622855756 7.283356035 7.780535803 7.991777234 7.773185826 7.656380519 114798230 linB Organic Remediation Pesticides related compound Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 8.245191399 8.147422442 7.604228961 7.40209475 7.935281501 7.615656039 7.631859647 7.325880042 7.899323999 78355749 atzA Organic Remediation Herbicides related compound Desulfovibrio desulfuricans G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 7.061295347 6.958023188 206282742 single_strand_annealing_protein Bacteria phage REPLICATION Mycobacterium phage Brujita order:Caudovirales;family:Siphoviridae; 7.747704269 7.688764477 7.670204737 7.390074851 7.711257562 7.760212925 7.457242934 7.665471505 7.816669707 148572334 AceA Carbon cycling Carbon degradation others Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 7.186247968 7.130525893 6.841658103 7.614004288 46520015 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.693775082 7.803392018 7.943896908 7.634155503 6.980457376 8.002923848 109290301 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.538029625 7.113241346 7.285194121 7.047002753 6.910347594 7.976065897 152957873 mauAB Organic Remediation Herbicides related compound Methylophaga marina superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Methylophaga; 7.423256824 7.492619376 7.496399855 7.225778891 7.645573199 7.656811343 7.600025592 7.650572843 7.681563562 73541439 sigma_70 Stress Sigma factors Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.813677298 8.078886705 7.713251279 7.590965769 7.926782243 7.900257658 8.186783049 7.964939883 7.808786301 124901244 fnr Stress Oxygen stress Burkholderia dolosa AUO158 7.970886048 7.810164441 8.39006321 8.077416201 7.95079915 7.51056821 7.683348172 89046482 amyA Carbon cycling Carbon degradation Starch Oceanicola granulosus HTCC2516 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 8.529491806 8.422404901 8.136984559 8.537877609 8.645497505 7.991467371 8.517507154 8.240310672 8.227082194 254516196 sox Sulphur Sulphur oxidation gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.700188123 7.562094986 7.834340782 7.083150774 7.560211211 7.668262565 7.790105836 7.821883295 119898764 mdlD Organic Remediation Aromatics Other aromatics Azoarcus sp. BH72 7.468819895 7.329921012 7.317536161 7.507103891 7.061713568 7.570614243 7.268741366 7.31209627 220029534 Host_recognition_T2_type Bacteria phage HOST RECOGNITION/STRUCTURAL Enterobacteria phage JS10 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.087319215 7.000797902 7.283068314 6.687971634 7.37618317 7.05866578 7.281472814 85824655 glnA Stress Nitrogen limitation Roseobacter sp. MED193 7.38982578 7.207460551 7.50474298 7.553231874 7.078374974 7.848926722 7.438323828 7.431589227 7.501901214 123201417 sigma_70 Stress Sigma factors Prochlorococcus marinus str. MIT 9515 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 7.364479746 7.109395967 7.097648364 6.83998763 7.327499311 7.138948097 6.741546702 7.168487859 157914087 CopA Metal Resistance Copper Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 8.077494297 7.783280554 8.005931014 8.19254795 8.220520147 8.061779405 8.048690865 82618389 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6.858125643 7.434037461 212692776 amyA Carbon cycling Carbon degradation Starch Bacteroides dorei DSM 17855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides dorei; 7.253945218 7.041205043 121301585 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 7.689012845 7.577609593 7.705266544 7.430844938 7.602851007 7.939738814 7.768774064 7.697223066 255064093 sigma_70 Stress Sigma factors Nitrosomonas sp. AL212 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 7.517438816 7.384320571 7.395729637 6.915047934 7.057436785 7.839401376 6.953239549 7.303634784 120405359 pheA Organic Remediation Aromatics Other aromatics Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 7.915838658 7.767897494 7.579536316 7.194437241 7.461474666 7.843773434 7.718843607 7.588654033 7.662116821 223896652 acetylglucosaminidase Carbon cycling Carbon degradation Chitin bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 7.318488459 7.299915962 7.18398056 6.653101569 7.107615976 7.609381487 7.412768017 7.380377043 7.446041766 134046356 bco Organic Remediation Aromatics Aromatic carboxylic acid Methanococcus maripaludis C5 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanococcaceae;genus:Methanococcus;species:Methanococcus maripaludis; 7.159007381 7.016588878 6.774273598 110596818 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Chlorobium ferrooxidans DSM 13031 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium ferrooxidans; 7.513268823 7.901261333 7.613637065 7.692077088 7.867704767 7.502108165 7.556904404 148653250 AceA Carbon cycling Carbon degradation others Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 7.075704324 7.329638813 6.999802228 7.175672059 7.501197969 7.096642885 7.307996146 7.166800946 159898971 ureC Nitrogen Ammonification Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 7.303277699 7.137847184 7.095962055 7.103122548 7.200187765 74056460 trzN Organic Remediation Herbicides related compound Thiobacillus denitrificans ATCC 25259 9.63552541 9.591916143 9.401529116 33391423 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.314763302 7.217125027 7.874639724 7.449357695 7.396687797 8.005740723 7.052963291 7.070027577 7.085730456 126196154 vanA Carbon cycling Carbon degradation Others Pseudomonas aeruginosa 2192 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 7.18930041 6.909287773 124113519 amyA Carbon cycling Carbon degradation Starch Vibrio cholerae 1587 8.212057893 8.379729936 8.580385529 9.030532759 8.786559561 9.148283492 9.311324858 8.985558169 219869854 dsrB Sulphur sulfite reductase Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7.629115792 7.664312284 7.444917045 7.494404418 7.430402655 7.922117027 7.411526947 7.532423071 7.316805136 209499101 katE Stress Oxygen stress Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.537364366 7.456339229 7.60757721 7.541765294 7.578952151 7.744084024 7.555022004 153888470 Arylest Organic Remediation Aromatics Other aromatics Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 7.373523201 7.500330989 7.23606794 7.29712535 7.508395827 8515791 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 7.601527395 7.970777295 8.042850661 7.251433783 7.840561047 8.095301974 7.759981332 8.05838052 7.640151769 95111068 B_lactamase_C Antibiotic resistance Beta-lactamases Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 7.833729594 7.73103168 7.636517793 7.090211104 7.30690801 7.618204516 7.238715473 7.349247879 7.397770852 169866261 Catechol Organic Remediation Aromatics Other aromatics Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 7.755104213 7.756627821 7.28392152 6.936862502 7.412958669 7.289695949 7.163288998 154162742 Catechol Organic Remediation Aromatics Other aromatics Xanthobacter autotrophicus Py2 7.809544441 7.895257513 7.564234024 7.626500334 7.841620733 7.974485474 7.867841327 7.547504634 121601699 sigma_70 Stress Sigma factors Bartonella bacilliformis KC583 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella bacilliformis; 7.627140985 7.044563464 7.535569666 7.758454788 220933438 arsM Metal Resistance Arsenic Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 7.560422039 7.323663743 7.90131202 8.09298713 7.67067079 8.049051112 7.728538268 7.892348162 7.842861667 253690140 AceB Carbon cycling Carbon degradation others Pectobacterium carotovorum subsp. carotovorum PC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 7.534539248 7.712269927 7.198645863 7.360497878 7.446370111 7.820850913 7.377778881 7.596228217 7.44185788 74038406 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.654473515 7.62213734 7.530724798 113876349 xylanase Carbon cycling Carbon degradation Hemicellulose Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 7.991596845 8.032275296 7.760230619 7.973400823 8.13062665 8.26394184 8.22893529 8.233997729 8.079711891 118051419 tfdA Organic Remediation Aromatics Chlorinated aromatics Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.017787587 7.435110574 7.771773738 7.211158029 7.813100529 7.919622637 7.253950661 7.338464329 7.591577683 92393175 ahpC Stress Oxygen stress Psychrobacter cryohalolentis K5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter cryohalolentis; 7.03908882 7.028729046 114765821 katE Stress Oxygen stress Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.04264013 8.134743185 7.960919604 7.825820338 8.275972163 8.136780055 8.145630114 8.205459577 7.879623615 88707366 phoA Stress Phosphate limitation Flavobacteriales bacterium HTCC2170 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales; 7.452485071 7.578590158 7.333849336 7.396207757 7.68104989 146343719 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.401911665 7.436732606 7.440862722 7.759093957 7.413818635 7.47896523 7.752251259 7.61961436 83316608 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.693862069 7.674413501 7.497306849 7.101122233 7.696060258 7.768178992 7.790022956 7.495045655 223887059 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.2598898 7.096084909 7.191742838 6.788621967 6.677971528 7.618666074 6.968661883 6.903130643 7.110786805 182677457 dehH Organic Remediation Chlorinated solvents Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 7.418203888 7.435212416 7.524886726 7.307247549 6.551556121 7.738861609 7.386615745 7.053199595 27348363 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.473925331 7.503318792 7.458187374 7.779397302 7.297822118 7.770562416 7.488462818 7.619652705 145318650 TehB Metal Resistance Tellurium Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 7.780685373 7.401056752 7.16210595 6.889413692 7.067472548 7.666552772 7.32085518 6.981819996 7.012055583 88700478 oxyR Stress Oxygen stress Congregibacter litoralis KT71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 7.379294111 7.272722561 7.044391535 6.841301065 7.369625497 7.716723949 7.23343023 7.038985944 7.470768108 214043035 gyrB other category gyrB Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.674830237 7.673365365 7.549567333 7.190735415 7.313479128 7.537824767 7.332991249 7.346424756 7.373501091 88698657 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Congregibacter litoralis KT71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 7.208646607 7.279901981 7.419073292 7.008029612 7.686374356 7.899938998 119391647 narG Nitrogen Denitrification Rhizobiales bacterium D5-11.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales; 8.032883751 8.20671256 8.071817615 7.436129809 8.143994295 7.963722881 8.355402311 8.406877451 7.833679986 78486364 TehB Metal Resistance Tellurium Thiomicrospira crunogena XCL-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Thiomicrospira;species:Thiomicrospira crunogena; 7.200708655 6.958630673 7.302236934 7.059759155 7.264087775 189495616 pstC Stress Phosphate limitation Chlorobium phaeobacteroides BS1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 6.941274538 7.100911066 6.985111894 6.66070316 7.274667696 157285650 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 8.028075723 7.729103757 7.540401941 7.765534748 7.637636498 7.902520575 219849782 TerC Metal Resistance Tellurium Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 8.230954105 8.101825475 8.20426579 7.831612622 8.004780339 8.121738515 7.697267927 8.176180035 7.982571502 192361369 glucoamylase Carbon cycling Carbon degradation Starch Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 7.501216384 7.427429438 7.616023207 7.368684601 7.491596708 7.839519288 7.206558982 7.531445553 7.400182785 166197619 dxnA Organic Remediation Aromatics Heterocyclic aromatics Nocardioides sp. DF412 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 7.91284229 7.665311276 7.454494316 7.286866934 7.790643959 7.569065597 7.720689683 7.84191033 7.620283345 157699696 obgE Stress Radiation stress Arcobacter butzleri RM4018 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Arcobacter;species:Arcobacter butzleri; 7.426752564 7.022503849 7.072921054 223509045 ArsC Metal Resistance Arsenic Ricinus communis superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Streptophyta;order:Malpighiales;family:Euphorbiaceae;genus:Ricinus; 8.508446624 8.30812264 7.952145913 8.458779009 8.413309734 8.193236439 8.146631586 8.094094974 8.182094661 126176237 AceA Carbon cycling Carbon degradation others Shewanella baltica OS155 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 7.312178943 7.142238474 7.132627718 6.989070353 7.45654214 84570682 DNA_polymerase_type_I Bacteria phage REPLICATION Xanthomonas oryzae phage OP1 order:Caudovirales;family:Siphoviridae; 7.274195528 7.109794175 7.303238877 12719409 single_strand_annealing_protein Bacteria phage REPLICATION Staphylococcus phage phiSLT order:Caudovirales;family:Siphoviridae; 7.257567056 7.268057977 7.259353798 256827777 pstA Stress Phosphate limitation Cryptobacterium curtum DSM 15641 6.943939667 6.981753233 7.206288512 6.885053653 7.444712043 125623227 ahpF Stress Oxygen stress Lactococcus lactis subsp. cremoris MG1363 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Lactococcus;species:Lactococcus lactis; 7.123418506 6.719057175 7.250874104 262199161 phoB Stress Phosphate limitation Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Haliangiaceae;genus:Haliangium;species:Haliangium ochraceum; 7.787323229 7.75671159 8.13561308 6.997163096 7.765442864 7.56727175 7.588083369 7.790299196 7.515053195 115367113 pchCF Organic Remediation Aromatics BTEX and related aromatics Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 7.381403187 7.346822645 7.273837562 7.52691259 7.140907353 7.634603866 7.663355257 7.526303842 7.523940854 154496457 obgE Stress Radiation stress Bacteroides capillosus ATCC 29799 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides capillosus; 7.912385531 8.171157404 8.444025055 7.952405857 8.237953023 8.255206093 8.061675008 8.408558273 7.948418751 93357785 mer Metal Resistance Mercury Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 7.688420057 7.815272217 7.64454036 7.689762025 8.206395826 8.120367792 8.165627755 8.04463614 7.852597591 257446143 Tet Antibiotic resistance other Treponema vincentii ATCC 35580 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema vincentii; 7.6256599 7.467357577 7.26001022 7.37772814 7.247539331 7.639929198 7.199980318 7.30320506 7.254925206 28200488 sigma_38 Stress Sigma factors Vibrio vulnificus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.367383067 7.526837372 7.001381037 7.214552646 7.758062658 46580503 CODH Carbon cycling Carbon fixation Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 7.709951074 7.87950743 8.001605911 7.791202924 8.240605589 7.688168248 7.988737986 8.355348838 7.884397225 169813862 gyrB other category gyrB Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 7.152914893 7.089707223 7.041345775 7.139142062 7.390922449 84663885 proO Organic Remediation Aromatics Other aromatics Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.178505477 7.520911661 7.123074295 6.910275181 7.307563989 7.505445824 160937731 sigma_24 Stress Sigma factors Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 7.845874793 7.544497456 7.622827342 7.129229863 7.567336839 7.424010468 7.705229342 7.678948112 7.260658542 112800955 CopA Metal Resistance Copper Campylobacter concisus 13826 7.295322968 7.063621281 7.074675957 7.169226619 6.784186624 114542332 pstB Stress Phosphate limitation Roseovarius sp. HTCC2601 8.05104908 7.971931227 7.683759361 7.323348787 8.113196696 7.718764169 7.223153533 7.869749433 21230307 ahpF Stress Oxygen stress Xanthomonas campestris pv. campestris str. ATCC 33913 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 7.912709763 8.12792756 8.312293074 8.251961814 8.29572449 8.31916774 8.173514824 8.493338518 7.953632709 238602691 exoglucanase Carbon cycling Carbon degradation Cellulose Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 7.255365901 7.093974404 7.047753924 7.033134002 6.950112325 7.601892185 6.880246369 7.162967306 152970028 pimF Organic Remediation Aromatics Aromatic carboxylic acid Klebsiella pneumoniae subsp. pneumoniae MGH 78578 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 7.569713437 7.259377476 7.290667342 7.388235886 110830554 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 7.182461287 7.271961538 7.404237575 7.289794176 229324526 pstC Stress Phosphate limitation Rhodococcus erythropolis SK121 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 7.339798824 7.255405433 7.095261509 6.917528184 7.329313023 7.622701503 7.238409706 7.382570905 146400915 cytochrome_c Bioleaching Electron transport Acidiphilium cryptum JF-5 7.46995096 7.44611234 6.991265758 7.676301943 7.555661335 7.587859633 7.144240566 82703094 Arylest Organic Remediation Aromatics Other aromatics Nitrosospira multiformis ATCC 25196 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira;species:Nitrosospira multiformis; 7.460305603 7.825945167 7.480955624 7.229857483 7.569287343 7.604649206 7.202288324 7.553556468 223585910 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.933982963 7.911933129 7.772562783 8.112967946 7.974533199 7.93099827 7.769385334 8.084897095 90416684 pnbA Organic Remediation Aromatics Nitoaromatics marine gamma proteobacterium HTCC2207 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.85241292 7.089779183 7.991789131 7.608681262 7.767390273 157321230 exochitinase Carbon cycling Carbon degradation Chitin Serratia proteamaculans 568 7.664988666 7.348515894 7.429139441 7.078555608 7.482020014 7.511535985 7.349013369 7.54569151 7.313501734 163761230 bclA Organic Remediation Aromatics Aromatic carboxylic acid Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 7.282104542 7.245200972 7.205273612 6.996997521 7.382333283 7.141761713 7.093004437 7.468434283 270040791 oxyR Stress Oxygen stress Serratia odorifera 4Rx13 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia odorifera; 7.532681828 7.35939575 15024354 TerD Metal Resistance Tellurium Clostridium acetobutylicum ATCC 824 7.360579808 7.303116093 7.40598965 6.790796731 7.460903356 7.130402056 6.978228283 7.309935 134249471 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Burkholderia pseudomallei 305 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 7.482089337 7.803984385 7.822623433 7.643731496 7.938691582 7.650518729 7.980722071 7.697450453 86748590 fnr Stress Oxygen stress Rhodopseudomonas palustris HaA2 7.369471412 7.736704058 7.433395196 6.820795748 7.319718832 7.66134688 433606 norB Nitrogen Denitrification Pseudomonas stutzeri superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.061101418 7.938354306 8.278937378 7.837692269 8.583298864 8.378110785 8.614551195 219676891 mdlC Organic Remediation Aromatics Aromatic carboxylic acid gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.260431688 6.784894373 7.1223386 7.332124846 7.69078942 119774211 phoB Stress Phosphate limitation Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 7.16924488 6.93057585 6.657157438 7.480063277 6.971639437 6.806619122 226312555 Tet Antibiotic resistance other Brevibacillus brevis NBRC 100599 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus brevis; 7.757358952 7.725949122 7.423395681 7.45192892 7.302106206 7.647935781 7.398771623 7.67013101 7.398271597 116101973 gyrB other category gyrB Pediococcus pentosaceus ATCC 25745 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Pediococcus;species:Pediococcus pentosaceus; 7.023447911 6.932774289 218765858 ChrA Metal Resistance Chromium Desulfurococcus kamchatkensis 1221n superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Desulfurococcus;species:Desulfurococcus kamchatkensis; 7.44486098 7.270833052 7.186308328 7.36712278 6.877912026 7.736971848 134102989 endochitinase Carbon cycling Carbon degradation Chitin Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 7.253218943 7.713768744 7.651816023 7.857186156 7.75002323 113196156 endochitinase Carbon cycling Carbon degradation Chitin Serratia marcescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 7.796620621 7.606610414 7.210102549 7.711838655 7.548411058 7.935978201 7.306804874 7.327043936 7.607195155 71848012 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Dechloromonas aromatica RCB 7.112216818 7.145519989 6.804259865 7.686047375 7.191045189 7.09930809 182632932 AceA Carbon cycling Carbon degradation others Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 7.677791505 7.551447805 7.938054465 7.502819741 7.535217187 7.935742585 7.428229303 7.39695434 7.438644206 17936513 aclB Carbon cycling Carbon fixation Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.819151069 7.741203326 7.612987619 7.636350061 8.116042136 8.264731031 8.098417214 7.984540708 114771104 glnA Stress Nitrogen limitation alpha proteobacterium HTCC2255 7.547979452 7.360215954 7.408149927 7.037363261 7.534299207 7.581712769 7.433483 7.060780516 7.650459527 154290409 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 7.347086755 7.566376894 7.553728212 227114463 iro virulence Pectobacterium carotovorum subsp. brasiliensis PBR1692 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 6.890595013 6.977670403 7.215688056 6.823284957 6.770499882 7.338632946 148514349 glnA Stress Nitrogen limitation Pseudomonas putida F1 7.681836472 7.837190216 7.622911515 7.856121949 7.922740775 8.010414287 8.058827546 8.000446363 7.832510738 50083700 katA Stress Oxygen stress Acinetobacter sp. ADP1 7.066887521 7.141745337 6.69509321 7.376270121 218988996 phenol_oxidase Carbon cycling Carbon degradation Lignin Inocybe sp. ST-2008 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Cortinariaceae;genus:Inocybe; 7.689007782 7.974698092 7.301605074 7.302907726 7.72504152 7.717340832 7.344104294 7.539052724 158320129 arsM Metal Resistance Arsenic Alkaliphilus oremlandii OhILAs 7.367042928 7.77343388 7.55244764 7.269250662 8.121749586 7.941925722 8.324148954 7.671230927 7.860937187 186474024 amyA Carbon cycling Carbon degradation Starch Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.302795357 7.358045872 7.410556502 7.433816466 7.056623704 7.224521277 7.160976836 7.14446523 84388661 fnr Stress Oxygen stress Oceanicola batsensis HTCC2597 7.943648903 7.959396634 7.394347397 7.916799265 7.590205117 7.77458013 7.837924403 283819674 sigma_24 Stress Sigma factors Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 7.346737786 7.396486461 7.229416371 6.869271213 7.60465764 111279529 ChrA Metal Resistance Chromium Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 7.550656512 7.609816977 7.599146844 7.442884617 7.945319843 8.096396332 7.917819208 8.013202538 7.744963511 255293520 cydB Stress Oxygen limitation Propionibacterium sp. oral taxon 191 str. F0233 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acidifaciens; 7.330790202 6.933881059 7.339875067 121603385 pcc Carbon cycling Carbon fixation Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 7.624045257 7.77559883 7.777856932 7.369197071 7.604210936 7.789967126 7.766085348 7.886465703 7.50767062 227875902 amyA Carbon cycling Carbon degradation Starch Mobiluncus mulieris ATCC 35243 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus mulieris; 7.794669731 7.469462411 7.426873039 6.989311656 7.098123718 7.687962479 7.423851364 6.909370852 7.419967157 194335650 ppx Phosphorus Phosphorus utilization Pelodictyon phaeoclathratiforme BU-1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 7.477332575 7.234847913 6.938059691 7.205226514 7.163526446 7.505465801 6.941952755 7.27246411 71037804 pilin virulence pilin Psychrobacter arcticus 273-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter arcticus; 7.869753352 7.9239643 7.707484622 7.410487433 8.239728575 7.820268577 7.929481173 7.827954806 7.837917465 13236824 dsrA Sulphur sulfite reductase Desulfotomaculum nigrificans superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 7.469061545 7.030754666 6.8537601 6.965445625 7.283509594 13517041 gyrB other category gyrB marine CFB-group bacterium MBIC04472 superkingdom:Bacteria;phylum:Bacteroidetes; 7.483604503 7.706158248 7.738440855 7.351693347 7.595106949 7.621683403 7.638612014 7.398433376 643636 pcpE Organic Remediation Herbicides related compound Burkholderia cepacia superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.503617251 7.573564615 7.461355937 7.126637656 7.446722514 148571778 silC Metal Resistance Silver Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 7.095715477 7.017397626 7.255387031 171741345 pcc Carbon cycling Carbon fixation Bifidobacterium dentium ATCC 27678 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium dentium; 7.696017427 7.662506122 7.799986292 7.511559876 7.286163636 8.108206243 8.023054038 7.772384543 7.616081403 83636253 linB Organic Remediation Pesticides related compound Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 7.159227221 7.078730072 6.89413031 7.34298912 6.93740105 7.264119329 56315833 TerZ Metal Resistance Tellurium Azoarcus sp. EbN1 7.800685837 7.805255838 7.905395347 7.52931643 7.991007669 7.967920558 7.77482171 7.576830831 7.83256287 1408293 mdlD Organic Remediation Aromatics Other aromatics Acinetobacter calcoaceticus 7.463867625 7.116415336 7.09739391 77378677 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 6.968646768 7.087956155 6.673352096 7.509206709 6.824418533 6.930986039 110646048 iro virulence Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 7.207732266 7.232146485 6.923720726 6.666248857 7.018799951 7.598186959 7.31900897 7.003993202 7.049133807 29652564 narG Nitrogen Denitrification uncultured bacterium 7.07540751 7.201811691 7.415277006 7.121150158 7.243712376 7.797717437 7.080093501 7.244669258 7.380293289 211959027 BDO Organic Remediation Aromatics BTEX and related aromatics Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 7.439099724 7.275121382 7.064638225 6.974815919 7.354494285 7.25126695 7.275715939 7.430339102 257386426 pstA Stress Phosphate limitation Halomicrobium mukohataei DSM 12286 7.753897333 7.83001693 7.521580668 7.687847348 7.617796713 7.829262844 7.482545819 7.403847877 163669314 clpC Stress Protein stress Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 7.401842885 7.468747272 8.015925344 7.120989659 7.573960448 7.516224963 7.654498325 120613310 pilin virulence pilin Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 8.082062086 8.033790044 8.103663386 7.463739618 7.972164943 7.660667578 7.701626926 8.066983587 7.976836512 218218826 CopA Metal Resistance Copper Mitsuokella multacida DSM 20544 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Mitsuokella;species:Mitsuokella multacida; 8.424402711 8.661382995 8.096210193 8.288840654 8.620021221 8.239295857 8.394184199 8.184347821 118340546 CopA Metal Resistance Copper uncultured Nitrospinaceae bacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Nitrospinaceae; 7.18799825 7.231353044 7.215459851 77815980 nasA Nitrogen Assimilatory N reduction Shewanella putrefaciens CN-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella putrefaciens; 7.329585742 7.083491076 7.505177731 7.744185201 6.959020142 7.560355824 7.305589028 7.192334917 7.472857396 126136269 mdlD Organic Remediation Aromatics Other aromatics Pichia stipitis CBS 6054 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Scheffersomyces;species:Scheffersomyces stipitis; 7.108106381 6.877912713 7.164528182 170655527 fnr Stress Oxygen stress Methylobacterium radiotolerans JCM 2831 8.199859425 8.1421639 8.132931458 7.834179796 8.269950769 7.684777095 8.168732001 8.485621682 8.057209602 194467376 ArsC Metal Resistance Arsenic Lactobacillus reuteri 100-23 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus reuteri; 7.748743603 7.396973199 7.681549323 7.785937977 7.93005311 7.530867434 7.274174524 7.539147962 151423896 katE Stress Oxygen stress Sulfurovum sp. NBC37-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;genus:Sulfurovum; 7.121166077 7.115466682 7.02505293 6.992180986 6.879217457 238698971 proW Stress Osmotic stress Yersinia kristensenii ATCC 33638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia kristensenii; 7.453775548 7.024023829 6.637604191 7.317699263 50982468 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7.453853212 7.788086549 7.733403724 7.773631774 7.588610113 7.671631929 7.327415555 7.50116275 7.841719678 119712179 mercury_resistant_gene Bioleaching Metal Resistance Sulfolobus solfataricus 7.351623038 7.074889509 170721130 HBH Organic Remediation Aromatics BTEX and related aromatics Pseudomonas putida W619 7.404366122 7.491373795 7.578576426 6.909843643 7.093966682 7.598992733 7.160054509 7.715214175 126347955 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces ambofaciens ATCC 23877 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ambofaciens; 7.626238308 7.491513303 7.800095555 7.225489763 7.366570637 7.926666463 7.59244855 7.331103288 7.314613147 157960568 TehB Metal Resistance Tellurium Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 8.053020781 7.642282214 7.253222335 7.960462315 7.750837672 7.687282929 7.469052295 7.45544527 113527710 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.292555718 7.951015738 8.108672397 7.673841497 8.247496978 8.02863191 8.102090078 8.179900457 8.293516475 170078607 hrcA Stress Heat shock Synechococcus sp. PCC 7002 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.549253073 7.53975131 7.488241019 7.24577569 7.366555313 7.61133768 7.522430135 7.690696054 117924882 pstS Stress Phosphate limitation Magnetococcus sp. MC-1 superkingdom:Bacteria;phylum:Proteobacteria;genus:Magnetococcus; 7.585328818 7.539473254 7.341751454 7.282983777 6.897470025 7.629054615 7.127030032 7.231185389 254547574 RNA_dependent__RNA_polymerase Bacteria phage REPLICATION Enterobacteria phage BZ13 family:Leviviridae;genus:Levivirus; 7.967039096 7.550095867 7.786042609 7.412947952 7.382179445 7.69342495 7.675935152 7.21316484 7.830720027 9971333 gyrB other category gyrB Cellulophaga lytica superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Cellulophaga; 7.727142843 7.315380333 7.401113887 7.458047043 7.638799142 7.727715384 7.628353491 7.437456509 7.646299027 212527822 BpH Organic Remediation Aromatics Aromatic carboxylic acid Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.173176814 7.41527396 6.71897711 7.687578567 6.979377458 7.3178624 212709156 ahpC Stress Oxygen stress Providencia alcalifaciens DSM 30120 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 7.189295305 7.174790547 199593991 narG Nitrogen Denitrification uncultured bacterium 7.796136346 7.496482566 7.656526051 7.485332473 7.456969139 7.421391127 7.578213388 7.482863452 170134595 sigma_24 Stress Sigma factors Burkholderia ambifaria IOP40-10 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 7.711332447 7.192809755 7.374837922 7.132387311 7.107728246 7.744702627 7.232250903 7.1686262 7.548417198 33320457 dsrB Sulphur sulfite reductase Desulfofustis glycolicus superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfofustis; 7.375401919 7.482455195 7.438022137 7.301848764 7.364227317 7.457869162 7.756958589 7.539185816 7.466081129 146404996 atzB Organic Remediation Herbicides related compound Bradyrhizobium sp. BTAi1 7.153649004 7.198537145 7.760649036 7.611315794 7.322690977 7.661159286 7.243785606 7.381527736 551846 ureC Nitrogen Ammonification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 7.353973378 7.333473029 7.318148404 7.373995885 6.705774348 7.509341527 7.155954208 7.026593018 189193193 nahF Organic Remediation Aromatics Polycyclic aromatics Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7.788440088 7.638194961 7.448070249 7.268249867 7.518181601 7.308131024 7.419263477 197785248 TerD Metal Resistance Tellurium Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 7.504347453 7.28974901 7.53974875 7.774307778 7.344511823 7.367311849 7.851017884 7.040750603 167648503 pstB Stress Phosphate limitation Caulobacter sp. K31 7.926576877 7.896784181 7.829085551 8.051265604 8.105951317 7.863871647 7.836713179 8.117747224 4981240 pcc Carbon cycling Carbon fixation Thermotoga maritima MSB8 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga;species:Thermotoga maritima; 8.175218653 7.913509709 8.14577762 7.828826731 8.600253513 8.40750447 8.628452898 8.506510105 220711943 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.861195524 7.323372705 7.383266656 7.51345414 78610575 glnR Stress Nitrogen limitation Lactobacillus sakei subsp. sakei 23K superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus sakei; 7.435530252 7.556382009 7.525695856 7.2698293 7.747143192 7.656022159 7.638399299 7.384225974 7.75466902 170143514 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 8.152723816 7.752447092 7.599872286 7.612115328 7.935829968 7.938035879 7.630755871 7.883081504 7.338021988 86284106 nmoA Organic Remediation Aromatics Nitoaromatics Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.298382822 7.148274233 7.257601762 33243139 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.468257051 6.851043709 6.959048746 6.644372887 7.033563856 145257148 phytase Phosphorus Phosphorus utilization Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8.217494122 8.143660378 8.189589102 8.324079115 8.209091601 8.346745213 8.29794645 8.589199874 113528451 chnB Organic Remediation Other Hydrocarbons Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8.227773313 8.148609577 7.660674685 7.344127782 7.968850547 7.47842134 8.080333199 196193822 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Alcanivorax sp. DG881 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 7.95126367 7.673144233 7.638453108 7.430143556 8.19868632 8.073120568 7.668364463 7.92227739 219675168 pimF Organic Remediation Aromatics Aromatic carboxylic acid gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.791165238 7.5571326 7.027018408 7.363813217 7.660147349 7.297803183 6.919637795 260864501 pstC Stress Phosphate limitation Ammonifex degensii KC4 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Ammonifex;species:Ammonifex degensii; 8.199373213 8.098006994 7.481738488 7.816706544 7.684943769 7.946222349 7.733752268 7.546232236 7.542032298 151302147 APS_AprA Sulphur adenylylsulfate reductase Desulfovibrio salexigens DSM 2638 7.252235031 7.16975266 6.616279708 7.378877817 116253905 cellobiase Carbon cycling Carbon degradation Cellulose Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.043556853 7.856622353 7.658683262 7.51320514 7.456472098 7.437847127 7.480550746 7.305689716 163793065 CODH Carbon cycling Carbon fixation alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 7.95664431 7.637080557 7.692611753 7.779268868 7.767610064 8.067788847 7.78739557 7.307981233 7.539727566 145244260 chnB Organic Remediation Other Hydrocarbons Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.387828331 7.943991491 7.321661249 7.129295 7.486288411 7.608492629 7.87331876 7.4931244 7.396521416 157679856 arsB Metal Resistance Arsenic Bacillus pumilus SAFR-032 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pumilus; 7.873872593 7.551233146 7.127364971 7.226258423 7.264940316 7.718527585 90335180 HBH Organic Remediation Aromatics BTEX and related aromatics Aurantimonas sp. SI85-9A1 7.285077007 7.354816718 7.410178713 7.203655842 7.47802302 7.897507594 7.495762203 7.393831886 7.578010096 212543469 BpH Organic Remediation Aromatics Aromatic carboxylic acid Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.659961272 7.50749566 7.399584848 7.500101588 7.157972825 7.750896209 7.237392461 7.065405231 7.414565949 213966460 pstC Stress Phosphate limitation Corynebacterium amycolatum SK46 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium amycolatum; 7.79537266 7.759806187 7.675622838 7.384299126 7.282376515 7.509380803 7.498053818 10279674 dsrB Sulphur sulfite reductase Desulfovibrio desulfuricans 7.807936922 7.803805945 7.633759799 7.100012585 7.526051169 8.034791484 7.383370334 7.224832292 7.410535202 46307930 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.152268686 7.104569323 7.262031743 261251478 pstC Stress Phosphate limitation Vibrio orientalis CIP 102891 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 6.921931622 7.278334045 7.280629609 260587088 cap virulence capsule Blautia hansenii DSM 20583 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Blautia;species:Blautia hansenii; 6.925309763 7.236519823 7.428063025 7.144055825 8.034987944 7.224269499 7.103625776 7.54202145 113953359 sigma_70 Stress Sigma factors Synechococcus sp. CC9311 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.343306818 7.169330657 7.30291663 7.167584412 6.787130965 7.508173255 50982466 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7.085008185 7.502589168 7.399094384 6.950790813 7.513160438 7.822177823 7.288882415 7.530479017 7.344175887 72120780 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.44456259 7.637487419 7.146180503 6.80817135 7.488128316 240103447 apu Carbon cycling Carbon degradation Starch Thermococcus gammatolerans EJ3 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus gammatolerans; 7.868869001 7.347660556 7.309897764 7.400589777 7.647026528 7.697930427 7.464847892 7.831584366 106895554 ChrA Metal Resistance Chromium Clostridium sp. OhILAs superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus oremlandii; 7.391318019 7.36643535 7.255099768 6.870134298 7.224325239 7.627378063 7.171486859 7.103671511 7.266983479 154253899 CadA Metal Resistance Cadmium Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 7.833153996 7.656990636 7.472834106 7.325860634 8.095853542 7.65333302 7.526022079 7.70159276 119188577 katE Stress Oxygen stress Coccidioides immitis RS superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides immitis; 6.626004717 7.283486219 119369984 gyrB other category gyrB uncultured bacterium superkingdom:Bacteria; 7.754910807 7.575135823 7.715140994 7.515543783 7.263663789 7.70206487 7.446282211 7.431793484 7.824556318 219563124 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 8.217745521 7.499836043 7.289061626 7.94516442 7.562089663 8.064407737 7.435783377 7.485876352 7.506740837 217986671 catB Organic Remediation Aromatics BTEX and related aromatics Bacteroides eggerthii DSM 20697 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides eggerthii; 7.729348963 7.382273855 7.693201715 7.596185651 7.917911639 7.653739119 7.553694583 170783452 cadBD Metal Resistance Cadmium Arthrobacter sp. AK-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.936790624 8.087284117 8.043175742 8.047380948 28394141 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.512640995 7.430158492 7.223911299 7.36187222 6.964081497 7.184409931 7.269585641 262373401 SMR_antibiotics Antibiotic resistance transporter Acinetobacter junii SH205 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter junii; 7.64554082 7.156755474 7.087166551 7.224431079 7.747337136 7.289606477 7.253742638 78167006 pstB Stress Phosphate limitation Chlorobium luteolum DSM 273 7.632580208 7.902045011 7.913954117 7.747298684 7.600993227 7.768601073 7.020648347 7.504782766 7.706669308 106775145 ZntA Metal Resistance Zinc Clostridium sp. OhILAs 7.346372551 7.136662421 7.662352544 7.566581471 7.898411557 7.535457235 7.487734569 7.90983831 56460607 aclB Carbon cycling Carbon fixation Idiomarina loihiensis L2TR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina loihiensis; 7.433394986 7.262257314 7.102011043 6.943898782 7.281749511 7.577209877 7.407331774 7.095525135 99082977 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.432397677 7.282238145 7.303100792 7.046067393 7.304901918 7.582619446 7.215479002 7.26438366 88786863 sigma_70 Stress Sigma factors Synechococcus sp. WH 7805 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.455343049 7.597100577 7.368087706 7.49211394 7.552945566 7.742813863 7.701395311 7.42805094 7.677645682 196196019 sigma_70 Stress Sigma factors Alcanivorax sp. DG881 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 7.828196771 8.00276397 7.857188517 7.352035084 7.971212729 7.774764744 7.7942241 7.854672881 7.877872024 76667420 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.203972121 6.955388107 6.927704557 6.744465567 6.689669349 7.300171663 119776607 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 8.172690829 8.299339501 7.971288653 8.128508063 8.109094106 8.11950861 8.270733933 7.514491854 7.584284066 87287257 catB Organic Remediation Aromatics BTEX and related aromatics Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 7.527773489 7.775213398 7.943997452 7.604582438 7.69933657 53759166 AceB Carbon cycling Carbon degradation others Paracoccidioides brasiliensis superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides; 7.517256719 7.510871332 7.34834426 7.09466324 7.686322512 7.538040234 7.314822691 7.361910742 7.558050071 147831532 alkK Organic Remediation Others Clavibacter michiganensis subsp. michiganensis NCPPB 382 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 7.6588204 7.498256254 7.896745043 7.06745877 7.985917335 120327008 phn Organic Remediation Herbicides related compound Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 7.284432558 7.424934388 7.191169647 7.16837107 7.478441029 163764262 pstB Stress Phosphate limitation Bacillus selenitireducens MLS10 7.652092049 7.319757155 7.20684162 7.30592782 7.472565039 7.424672622 225213231 cda Carbon cycling Carbon degradation Starch Roseburia inulinivorans DSM 16841 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia inulinivorans; 7.263414456 7.301600328 7.505684654 6.738803697 7.137559644 7.789000915 7.184309223 7.476602418 126470038 bphC Organic Remediation Aromatics Polycyclic aromatics Rhodococcus rhodochrous superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.143655572 7.852517934 8.136126003 7.774235649 8.420352831 7.807061017 8.042118666 8.03446843 8.397778226 59712656 nplT Carbon cycling Carbon degradation Starch Vibrio fischeri ES114 7.183607309 7.190746337 7.506580522 7.408612041 6.685939737 7.464834266 6.964212687 7.011614041 7.628298118 221633534 glnA Stress Nitrogen limitation Thermomicrobium roseum DSM 5159 7.434501559 7.542007017 7.631561304 7.472967641 8.089260992 7.736237285 7.791545927 7.761099284 85710459 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Erythrobacter sp. NAP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 7.835598742 7.542220359 7.53442296 7.496519299 7.942230609 7.806785688 7.763131725 7.641532867 8.054814656 67085284 ChrA Metal Resistance Chromium Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 7.809329828 7.770777602 7.730411722 7.60185589 8.159495761 7.967911401 7.996737561 7.995591946 8.180704507 120587215 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 7.544152727 7.863277319 8.139492891 7.951846519 7.766660348 7.848069349 7.897067404 7.780963624 98662768 gyrB other category gyrB Pelotomaculum thermopropionicum SI superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Pelotomaculum;species:Pelotomaculum thermopropionicum; 7.221093652 7.324767066 7.018028589 186472841 PobA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.661034248 7.622688222 7.547546188 7.148665521 7.784810853 7.96436118 124496680 Al Metal Resistance Aluminum Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 9.083892321 7.536285103 7.255664401 7.2454234 7.095525135 7.677888712 167565433 silC Metal Resistance Silver Burkholderia oklahomensis EO147 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia oklahomensis; 7.751855141 8.003840222 7.204742704 7.577994166 7.864898778 8.013044436 7.865141174 7.762975477 171743234 ppx Phosphorus Phosphorus utilization Bifidobacterium dentium ATCC 27678 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium dentium; 7.28646746 7.942367781 7.336154433 7.690088353 7.539086835 8.073562042 226354803 phenol_oxidase Carbon cycling Carbon degradation Lignin Pycnoporus sanguineus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Pycnoporus; 8.390211779 8.580698942 8.42616788 8.132941988 8.637531895 7.994292776 8.716457153 8.51708434 8.380323282 71556283 katA Stress Oxygen stress Pseudomonas syringae pv. phaseolicola 1448A 7.36328056 7.381049205 7.303306033 7.568226158 7.242240988 7.168094685 7.321887636 7.162540176 27376604 tfdA Organic Remediation Aromatics Chlorinated aromatics Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.773149358 7.409379463 7.274684083 7.858051129 7.564487678 7.399879351 7.211856364 7.503595917 163867358 grpE Stress Heat shock Bartonella tribocorum CIP 105476 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella tribocorum; 7.509472 7.20876214 109290327 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.38936642 7.362933623 7.576427007 7.501434141 7.272772711 7.827392713 7.228004402 7.367582073 7.724767825 158537975 mcrA Carbon cycling Methane Methane production uncultured euryarchaeote superkingdom:Archaea;phylum:Euryarchaeota; 7.453109222 7.266955224 7.080452514 7.162384641 7.434812938 7.291071403 284046777 hly virulence hemolysin Conexibacter woesei DSM 14684 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Conexibacteraceae;genus:Conexibacter;species:Conexibacter woesei; 8.136034366 8.138833545 7.812534616 8.00682205 7.897936018 7.677385942 42555674 xylanase Carbon cycling Carbon degradation Hemicellulose Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 7.69119536 7.619807258 7.57143388 7.45205319 7.199785698 7.224929525 7.174106387 153007101 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Anaeromyxobacter sp. Fw109-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 7.350868661 7.560329285 7.967212656 8.062592614 7.704886452 7.900006837 7.813352021 7.526033718 227848302 pstB Stress Phosphate limitation Halogeometricum borinquense DSM 11551 7.908495508 8.292869139 8.209804549 7.866710881 8.34240367 8.070508314 8.383444731 8.421972631 8.06402145 62003503 narG Nitrogen Denitrification uncultured bacterium 7.26007519 7.527217103 7.486039493 6.887710673 7.191333268 7.658110092 7.350839465 7.526666421 7.487999287 12003192 rd Organic Remediation Chlorinated solvents Desulfitobacterium chlororespirans superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium; 7.328888594 7.722313399 7.567381822 7.354019531 7.675613367 7.807461747 7.366275335 7.48678095 7.509246315 160364066 tfdA Organic Remediation Aromatics Chlorinated aromatics Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.606361398 7.571178785 7.990142076 16580695 mnp Carbon cycling Carbon degradation Lignin Phlebia radiata 7.01328643 7.052312871 7.118947376 6.940085156 6.933652196 7.347876095 7.238313775 7.479684332 227821570 fnr Stress Oxygen stress Rhizobium sp. NGR234 7.55919636 7.297894457 7.402161014 7.024663114 7.314743846 167594281 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7.304107585 7.259765594 7.277450617 7.125772033 7.127429447 7.492429289 7.169003281 7.030163353 83838314 pstB Stress Phosphate limitation Roseovarius nubinhibens ISM 10.0595885 9.459552035 9.882635746 9.690152258 9.79013787 18077868 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 7.404317654 7.35430092 89107408 SMR_antibiotics Antibiotic resistance transporter Escherichia coli W3110 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 7.128392387 7.207930387 7.053615052 119957774 linB Organic Remediation Pesticides related compound Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.093622753 7.851410442 7.139217064 7.764467099 7.536048551 7.731367427 7.410868338 154156203 alkJ Organic Remediation Other Hydrocarbons Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 7.324685853 7.412075296 7.011834653 7.269038882 19909739 gyrB other category gyrB Paracoccus sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 7.663480594 7.632188455 7.768679056 7.265292024 7.830892951 7.777603802 7.790464903 7.838953281 221133502 glnA Stress Nitrogen limitation Glaciecola sp. HTCC2999 7.2635728 7.13848648 7.120224134 6.962889 6.965577406 6321185 ppx Phosphorus Phosphorus utilization Saccharomyces cerevisiae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Saccharomyces; 7.075483897 7.075691574 7.02073107 6.719979098 7.521238212 7.054301899 6.917039587 7.322641684 66844610 tfdA Organic Remediation Aromatics Chlorinated aromatics Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 7.418733501 7.335391871 7.256951731 7.64797757 7.661061408 7.538429339 7.587459376 7.43870489 27361331 endochitinase Carbon cycling Carbon degradation Chitin Vibrio vulnificus CMCP6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 7.314949119 7.069325773 7.068152769 7.346985375 90954910 glycosyl_transferase_EPS Bioleaching EPS Sulfolobus tokodaii str. 7 7.666497844 7.239331536 7.371466845 7.481673296 7.17897432 153889146 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 7.551205991 7.569862837 7.512197283 6.910474259 7.396277051 7.770204092 7.663489563 7.389350593 146188507 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.484658417 7.429017814 7.410433736 7.472120554 7.177934558 7.403572622 7.464446246 7.59539454 197629047 nplT Carbon cycling Carbon degradation Starch Thermococcus barophilus MP 7.342806021 7.125673788 4579699 catB Organic Remediation Aromatics BTEX and related aromatics Frateuria sp. ANA-18 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Frateuria; 7.73913262 8.164969728 7.710228961 8.159082638 8.076677799 7.742559903 8.09301744 7.824758079 112463277 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.859316612 7.945176615 7.666741137 7.438650309 7.879070571 7.742551428 7.834414088 7.954545279 8.090374252 83949534 ppx Phosphorus Phosphorus utilization Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 8.15120306 7.376605719 7.419595421 7.891787538 7.92057758 7.634126895 7.439204116 7.953024863 126630922 pstB Stress Phosphate limitation Marinobacter sp. ELB17 7.887793692 7.760293656 7.521284961 7.600470019 7.888624922 7.789857718 7.795043762 7.583464962 7.559589436 254555787 pstB Stress Phosphate limitation Lactobacillus plantarum JDM1 7.604284614 7.521504977 7.402458989 7.407971514 7.266350497 7.617708305 7.390417084 7.295231488 7.37201365 151302334 APS_AprB Sulphur adenylylsulfate reductase Desulforhabdus sp. BKA11 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Desulforhabdus; 8.143881306 7.867120871 8.054764345 7.027421638 7.537192571 7.762354755 7.701441792 7.44318242 126013971 atzA Organic Remediation Herbicides related compound Staphylothermus marinus F1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Staphylothermus;species:Staphylothermus marinus; 7.350022355 7.132683511 6.98717929 7.506187886 7.037648063 6.853554282 7.318788545 167658336 CopA Metal Resistance Copper Alistipes putredinis DSM 17216 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes;species:Alistipes putredinis; 7.489236223 7.199855663 7.29704441 6.782079565 7.006829839 7.246421485 7.445420292 77862464 mcrA Carbon cycling Methane Methane production uncultured archaeon superkingdom:Archaea; 7.890007835 7.582740951 7.645850998 7.43642791 7.366693002 7.851952595 7.383474001 7.505684106 94451137 gyrB other category gyrB Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata) superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;genus:Candidatus Sulcia;species:Candidatus Sulcia muelleri; 7.836148794 7.250077523 7.51355076 6.986377539 7.187225404 163851124 atzB Organic Remediation Herbicides related compound Methylobacterium extorquens PA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 10.1614301 10.24841018 9.852838172 260892897 phoB Stress Phosphate limitation Ammonifex degensii KC4 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Ammonifex;species:Ammonifex degensii; 7.568575354 7.527985142 7.186151966 7.067183648 84508875 atzA Organic Remediation Herbicides related compound Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 7.365358026 7.356102976 7.287095917 6.763444215 6.923132997 7.398198119 58254610 Al Metal Resistance Aluminum Lactobacillus acidophilus NCFM superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus acidophilus; 7.806752174 7.518018971 7.425653601 7.318388537 7.56464308 126105499 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.259802434 7.346457845 7.129293168 7.487922488 7.627997483 7.789903782 7.301037429 7.536073773 212536170 BpH Organic Remediation Aromatics Aromatic carboxylic acid Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 6.988589473 6.895695519 7.277525192 55230242 PobA Organic Remediation Aromatics Aromatic carboxylic acid Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 7.517575489 7.467561893 7.627131749 7.104139482 7.370154093 7.690561225 7.582249559 7.528794297 7.596468405 34604744 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.083997902 7.195024943 57160549 rubisco Carbon cycling Carbon fixation Thermococcus kodakarensis KOD1 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus kodakarensis; 7.134228837 7.51036455 7.727230595 7.48290422 7.554920084 7.700797615 7.689444419 7.855195024 7.521453251 145606454 chnB Organic Remediation Other Hydrocarbons Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 7.105973827 7.253636258 7.074542386 149376143 sigma_70 Stress Sigma factors Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 7.524657016 7.549040412 7.662131169 7.428551497 7.418595788 7.759930701 7.507812808 7.610339017 7.918223953 38373165 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.091515704 8.028687516 8.053429826 7.930083815 7.755960131 8.118821696 7.954855377 7.796114703 7.758128665 113871774 ppx Phosphorus Phosphorus utilization Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 7.696710452 7.798689974 7.5410245 7.688897016 7.462887218 7.4358174 7.890361535 257064641 clpC Stress Protein stress Slackia heliotrinireducens DSM 20476 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Slackia;species:Slackia heliotrinireducens; 7.039567478 7.060395396 218250044 nrfA Nitrogen Dissimilatory N reduction Mitsuokella multacida DSM 20544 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Mitsuokella;species:Mitsuokella multacida; 8.025059285 7.464551584 7.152564829 7.15827162 7.639191353 7.752930255 7.397122375 7.297841178 7.62962411 46307862 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.20974949 8.048772399 8.219032796 8.09774312 8.052535368 8.134649114 8.324651752 8.195698511 8.001849254 213876576 pilin virulence pilin Vibrio vulnificus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.04018409 6.938046967 7.116004212 6.577573285 7.334983628 7.002374995 6.944193432 282565018 oxyR Stress Oxygen stress Providencia rustigianii DSM 4541 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 7.542502929 7.546446946 7.444048664 7.56670409 7.382801796 7.823334911 7.494106381 7.344054063 7.646968464 260613648 grpE Stress Heat shock Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 7.420243064 7.398780674 7.213489661 62199838 UvsW Bacteria phage REPLICATION Enterobacteria phage RB69 7.1084601 6.836047017 170140575 nhh Organic Remediation Aromatics Nitoaromatics Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 7.534619298 7.452161661 7.908201714 8.259358841 7.63972312 7.785527963 7.657327798 222086083 SMR_antibiotics Antibiotic resistance transporter Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.748841992 7.447482329 7.856319695 219536457 dmsA Organic Remediation Others Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 7.655146662 7.532929073 7.498180134 7.419048576 7.780802047 8.059624085 7.571717363 7.564603325 46307890 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.330820452 7.206558402 7.261706713 6.645280516 7.485763549 170696323 PobA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 7.366853286 7.423359793 7.354983594 7.093478943 7.283967342 7.53843256 7.332064148 7.072267053 7.468704184 78102219 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.335771878 7.34559576 7.065747905 7.029271819 7.716600301 148252166 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.369058932 8.343008213 8.30510906 8.677500071 8.514154718 8.335323727 8.584643102 8.155058801 28869623 MATE_antibiotic Antibiotic resistance transporter Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 7.301495969 7.608586401 7.333633311 7.24796432 7.567801521 7.208783351 7.41301295 167567944 type_III_secretion virulence secretion Burkholderia oklahomensis EO147 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia oklahomensis; 7.858320695 7.722550873 7.506230176 7.351954005 7.329836862 7.758260607 7.580882999 7.511716139 7.293474036 240249263 hrcA Stress Heat shock Bifidobacterium animalis subsp. lactis Bl-04 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 7.676342188 7.771704966 7.531718347 7.64519858 7.642280431 127514531 sigma_32 Stress Sigma factors Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 6.861184569 7.032699116 253701544 ahpC Stress Oxygen stress Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 7.353759251 7.350319918 7.236609285 7.136454827 7.002758816 7.472705191 7.238124841 7.298028322 212662853 catB Organic Remediation Aromatics BTEX and related aromatics Bacteroides dorei DSM 17855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides dorei; 7.046798601 7.20791011 7.586053893 7.194926504 7.553334036 114542685 AceA Carbon cycling Carbon degradation others Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.136089599 8.208929418 7.882190258 7.923555086 8.385216289 8.345613378 8.40493778 8.392718477 8.206933581 114328262 katE Stress Oxygen stress Granulibacter bethesdensis CGDNIH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 7.328085175 7.266777652 7.216538451 6.718452514 7.626965015 224223695 rubisco Carbon cycling Carbon fixation Magnetospirillum gryphiswaldense superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum; 7.589064379 7.698983297 7.494011219 7.143956 7.569549599 7.751059967 7.50606809 7.79707107 106882582 ChrA Metal Resistance Chromium Psychromonas ingrahamii 37 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas;species:Psychromonas ingrahamii; 7.026836517 6.826466805 7.084826799 195541933 fnr Stress Oxygen stress uncultured bacterium 1062 7.660469519 7.504853654 7.373802029 7.225989144 7.272318992 7.428487994 7.393632392 7.094473309 7.409508852 133738708 CadA Metal Resistance Cadmium Herminiimonas arsenicoxydans 7.578379581 7.272709045 7.78353829 7.353730472 7.251632096 7.871342962 7.267519847 7.375112752 7.370564645 120606683 ChrA Metal Resistance Chromium Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 8.325731417 8.811807088 8.545711948 7.954265933 8.726587988 8.139876131 8.245799962 8.150240116 8.50871782 227070142 obgE Stress Radiation stress Lactobacillus reuteri MM2-3 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus reuteri; 7.659175212 7.794484788 7.802105816 7.671891847 8.227168333 7.720092926 7.516244406 7.382684026 7.922015684 87251639 nirS Nitrogen Denitrification Paracoccus sp. R-27041 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 7.774025067 7.732339998 8.007507836 7.604927711 8.36102074 8.302546547 8.148546042 8.164297468 255036693 sigma_24 Stress Sigma factors Dyadobacter fermentans DSM 18053 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 7.402950544 7.073628487 7.45174006 7.289151376 6.955718771 7.380090352 7.07806445 7.372615882 56419437 ZntA Metal Resistance Zinc Geobacillus kaustophilus HTA426 7.26079489 7.396664179 7.630251546 7.09048948 7.387991121 7.778082944 7.524239733 7.57875485 254423872 amyA Carbon cycling Carbon degradation Starch Synechococcus sp. PCC 7335 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.535937186 7.753299351 7.361053309 7.662235362 89951309 pilin virulence pilin Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 6.904475478 6.833894027 6.783054551 7.182890966 255021600 pstC Stress Phosphate limitation Acidithiobacillus caldus ATCC 51756 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 7.992456842 8.222071455 7.843350845 7.972351841 8.404711851 8.040121232 8.121114727 8.050678995 7.862480036 42494406 cmuA Organic Remediation Chlorinated solvents uncultured bacterium superkingdom:Bacteria; 7.365761518 7.151581434 7.274114444 115372336 TerC Metal Resistance Tellurium Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 8.049888568 7.837393535 7.942946424 7.629247332 8.187462799 8.166284337 8.109554296 7.494044135 7.559523 161019623 lysin Bacteria phage LYSIS Bacillus phage bg3 6.785951282 6.92114415 6.754377161 17739218 CopA Metal Resistance Copper Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.655694099 7.436323017 7.541665864 6.995013623 7.439422665 7.609755082 7.415274318 7.408208209 56475589 pchCF Organic Remediation Aromatics BTEX and related aromatics Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 7.326257207 7.139369526 6.930826846 260613559 phoB Stress Phosphate limitation Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 8.091654407 7.965759604 8.653871052 8.266121309 8.460820505 8.362322209 8.375442702 8.293720367 8.237140077 109453736 gyrB other category gyrB Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 7.308973531 7.027035052 7.040056842 7.056908708 169811547 proV Stress Osmotic stress Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 7.403680417 7.446056845 7.353343052 7.04772725 8.019250724 7.226117096 7.283234721 7.517474963 164614063 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.766169624 7.866186512 7.864729965 7.435048426 7.889532146 7.512003871 7.894923025 7.64949765 7.604072259 90323699 glnA Stress Nitrogen limitation Photobacterium profundum 3TCK 7.422933259 7.205983746 7.338972401 3947455 major_capsid_protein Bacteria phage STRUCTURAL Streptomyces phage phiC31 order:Caudovirales;family:Siphoviridae;genus:PhiC31-like viruses; 7.863248527 7.349675701 7.514421678 7.632975551 7.410798424 7.695730076 7.179581329 7.582604103 7.325189197 238702580 iuc virulence aerobactin Yersinia aldovae ATCC 35236 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia aldovae; 7.847746985 7.914750304 7.542198471 7.789540396 7.607077622 7.632646637 7.714075197 7.464803273 7.577257908 3157598 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 7.470852272 7.494949998 7.39388655 7.201254768 7.203012626 7.855270324 7.236127842 7.393729234 7.52205731 15673441 bglH Stress Glucose limitation Lactococcus lactis subsp. lactis Il1403 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Lactococcus;species:Lactococcus lactis; 7.241032437 7.347975756 71908394 benD Organic Remediation Aromatics Aromatic carboxylic acid Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 7.367061301 7.524274009 7.575716841 7.072354823 7.5024011 7.635424371 7.419677015 7.296374763 30180748 pilin virulence pilin Nitrosomonas europaea ATCC 19718 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas europaea; 7.290714788 7.268613674 7.441075298 7.162690464 7.699066991 7.148340031 6.992957837 7.269974654 81251637 nirS Nitrogen Denitrification uncultured organism 7.616596876 7.425998871 7.293350077 7.653079543 7.613822382 7.56862242 7.819406561 7.513462831 24351090 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Shewanella oneidensis MR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella oneidensis; 6.788868087 7.415266455 60476048 rubisco Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.391948354 7.109319157 7.051647544 7.479092144 7.285891112 7.520340143 113874996 pcc Carbon cycling Carbon fixation Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 7.729042467 7.621430276 7.560930916 7.36011593 7.398368723 7.741708981 7.585255441 7.574565848 224802186 ureC Nitrogen Ammonification Opitutaceae bacterium TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 7.587293295 7.284023249 161323298 silP Metal Resistance Silver Kordia algicida OT-1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Kordia;species:Kordia algicida; 7.274026921 6.84634495 7.108005153 6.814798161 7.610675184 7.112388862 6.786165893 85703115 pstB Stress Phosphate limitation Roseovarius sp. 217 7.310531625 7.166932948 7.712795176 7.252867304 7.872967533 7.5608789 7.724163839 7.620774426 119672567 exaA Organic Remediation Chlorinated solvents Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 7.881279079 7.79309066 7.615642696 7.795438244 8.291426207 8.209022326 8.051364531 7.944755705 7.931930406 70992975 ara_fungi Carbon cycling Carbon degradation Hemicellulose Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 8.020701015 8.038658353 8.082295966 7.974426984 8.372967118 8.277984488 8.380916494 8.046789847 8.290652097 154688035 bglP Stress Glucose limitation Bacillus amyloliquefaciens FZB42 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 8.629528893 8.677881913 8.56568258 8.324236126 8.730173345 154294685 Catechol Organic Remediation Aromatics Other aromatics Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 7.447780669 7.298847978 7.327080441 6.95734352 7.279927222 7.736463219 7.271983012 7.407054073 7.352010433 212714088 bco Organic Remediation Aromatics Aromatic carboxylic acid Bifidobacterium pseudocatenulatum DSM 20438 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium pseudocatenulatum; 7.880748468 7.643414814 7.344756567 7.875814366 7.624611622 8.202770328 7.772960148 7.566243621 7.502391893 225203853 sigma_24 Stress Sigma factors Proteus penneri ATCC 35198 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus penneri; 7.203809746 7.227500747 7.175252281 148252282 sox Sulphur Sulphur oxidation Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.274169486 8.011808742 7.868563545 8.192260073 8.134417267 8.015909273 7.863187209 7.711498574 7.758098284 167587165 glnA Stress Nitrogen limitation Burkholderia ubonensis Bu 8.141439903 8.173632337 8.091523024 7.932505644 8.542971369 7.958557405 8.207751614 7.937629046 72121569 cbdA Organic Remediation Aromatics Chlorinated aromatics Ralstonia eutropha JMP134 7.862718937 8.279686942 8.148575695 7.914554533 8.203990781 8.260498651 7.965432574 8.354616024 8.013902769 242002752 Tet Antibiotic resistance other Ixodes scapularis superkingdom:Eukaryota;kingdom:Metazoa;phylum:Arthropoda;class:Arachnida;order:Ixodida;family:Ixodidae;genus:Ixodes; 8.042647787 7.879090877 7.713624628 8.231762845 7.742540871 7.725817738 7.722508579 7.674962654 7.889542021 119946057 pstB Stress Phosphate limitation Psychromonas ingrahamii 37 7.815646003 7.500330989 7.597613848 7.173943594 118424298 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.323687616 7.78211352 7.213854693 6.918131029 7.894601812 7.398793488 7.222365897 7.655559515 78693100 xylA Carbon cycling Carbon degradation Hemicellulose Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.120090624 7.713619715 7.792994516 7.598100166 8.195372546 8.067805165 7.996727252 7.885838829 33640507 gyrB other category gyrB Prochlorococcus marinus str. MIT 9313 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 7.26451545 7.363430644 7.11415046 6.902503101 7.555114625 6.854340969 7.021700864 33597648 ahpC Stress Oxygen stress Bordetella parapertussis 12822 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella parapertussis; 7.213731259 7.23015393 118570437 trzN Organic Remediation Herbicides related compound Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 7.277435264 7.293079233 7.183751853 6.900745423 7.104797606 7.637947371 7.241552427 7.146447245 7.307568157 62512278 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.988162283 8.21864935 8.00256347 7.909085185 8.508579556 7.94235863 8.40578518 8.456878433 8.032798933 212536995 cellobiase Carbon cycling Carbon degradation Cellulose Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 6.848940229 7.008937762 119960974 hrcA Stress Heat shock Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 7.38448132 7.377126252 7.54965922 7.290768955 7.636927231 7.625483192 7.948618223 7.580468582 7.914893816 209501161 bphF1 Organic Remediation Aromatics Polycyclic aromatics Burkholderia sp. H160 8.467626038 8.110425549 7.969615916 7.884635152 8.089159492 7.919897224 8.055044369 7.922366297 7.730685128 87281235 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.287837978 7.300276103 7.287762747 7.170005071 7.30330746 7.976666982 7.553365002 7.216434685 7.523732195 142852379 ArsC Metal Resistance Arsenic Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 8.525542723 7.949579297 8.012123809 7.777090519 8.4930927 8.286337594 7.938158466 8.083069261 78061125 TerZ Metal Resistance Tellurium Burkholderia sp. 383 7.480136693 7.45864192 7.397943721 7.340261995 7.774662977 7.606894493 7.12813897 86139012 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.697179118 7.645755282 7.375699843 7.603537096 7.276696735 7.687371321 7.251110899 7.15168303 268615524 cda Carbon cycling Carbon degradation Starch Sebaldella termitidis ATCC 33386 7.117263473 7.086040382 237820973 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Streptococcus pneumoniae CCRI 1974M2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus pneumoniae; 7.669221704 7.601833903 7.594808685 6.958975025 7.238109576 7.637359712 7.49744166 7.588303607 78194180 pimF Organic Remediation Aromatics Aromatic carboxylic acid Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 7.443512239 7.700287995 7.469161684 7.684273102 7.227284536 7.691726782 50084188 nagG Organic Remediation Aromatics Aromatic carboxylic acid Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 7.327282335 7.333820151 7.306799928 7.292043333 7.139976146 7.451192777 220029171 terminase_large_subunit Bacteria phage REPLICATION Enterobacteria phage JSE order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.51587822 7.527296599 7.988925228 7.805998371 7.386327659 7.178364062 7.192184231 78093580 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.151324152 7.899825987 7.897933899 7.404964929 7.313291142 7.948930678 18034221 APS_AprA Sulphur adenylylsulfate reductase 7.645099905 8.151335134 7.294985184 7.494557611 8.221801445 7.840915384 7.761408074 7.902912687 7.690930345 212669669 ara Carbon cycling Carbon degradation Hemicellulose Bacteroides finegoldii DSM 17565 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides finegoldii; 8.716159062 8.531982641 8.394935212 8.129298997 8.067858858 8.308497647 8.145394574 118045694 pcc Carbon cycling Carbon fixation Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 7.102761617 7.55288681 78044864 dsrB Sulphur sulfite reductase Carboxydothermus hydrogenoformans Z-2901 7.253006242 7.124804595 7.442343089 112462677 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.802881857 7.556107382 8.09852059 7.177625125 7.929289366 7.73871129 7.732765944 7.837225924 7.576838006 219882847 clpC Stress Protein stress Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 7.398286248 7.16789592 7.655913991 6.989894171 7.697574975 192282513 hrcA Stress Heat shock Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.613284414 7.411165834 7.538523702 7.410491041 7.665368013 7.658019707 7.470684221 18143416 endochitinase Carbon cycling Carbon degradation Chitin Alteromonas sp. O-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 7.101294548 7.195888354 146275479 phdCI Organic Remediation Aromatics Polycyclic aromatics Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 7.518111299 7.495024984 7.345084632 7.462888115 6.98635147 7.148740746 109452560 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.69724817 7.648093189 7.689370129 7.686306306 7.976585588 7.848640387 7.935395132 7.44345889 7.577551035 158147971 mcrA Carbon cycling Methane Methane production uncultured archaeon superkingdom:Archaea; 7.756208774 7.75964895 7.706220345 7.027485724 7.438592656 7.78328119 7.392759865 7.477565788 7.380315757 52308256 pnbA Organic Remediation Aromatics Nitoaromatics Mannheimia succiniciproducens MBEL55E superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Basfia;species:Mannheimia succiniciproducens; 7.352474326 7.525422006 7.674625087 7.973176808 6.697143662 7.922674778 7.159017068 7.276347234 7.792856569 172056459 CadA Metal Resistance Cadmium Exiguobacterium sibiricum 255-15 7.837105505 7.359763016 7.331214492 7.632561413 7.562803599 7.519296184 10179427 phenol_oxidase Carbon cycling Carbon degradation Lignin Pycnoporus cinnabarinus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Pycnoporus; 7.889220486 7.576886179 7.328579363 7.511715377 7.667362115 7.555218724 7.245252971 145319955 gyrB other category gyrB Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 7.996971279 8.069451643 7.948551055 7.728502462 8.367445758 8.091002562 8.22961537 8.069079297 8.036759226 109452513 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.486291428 7.332905459 7.280521772 7.076129448 7.506862179 88779006 xylanase Carbon cycling Carbon degradation Hemicellulose Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 7.120728142 7.351301846 7.214714194 7.056713647 7.549251801 158440027 grpE Stress Heat shock Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 7.449875742 7.466918913 7.432605303 7.15504692 7.695385158 7.889839922 7.645825279 7.589920388 7.553939394 254507324 hly virulence hemolysin Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.724701288 7.383038342 7.778450873 7.592451347 8.09331986 7.569828695 8.020234008 8.30492938 7.64194995 87331908 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 8.369482668 8.130596865 8.030046199 7.819490057 8.398940407 8.208399596 8.381757205 8.229204083 8.454661997 126709942 obgE Stress Radiation stress Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 7.85407924 7.693287154 7.776571027 7.064526228 7.771634581 7.593709387 7.566692757 7.809440372 118504379 pulA Carbon cycling Carbon degradation Starch Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 7.429735044 7.353078652 7.378508085 7.508975976 7.557863169 7.373587358 169869518 ahpF Stress Oxygen stress Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 7.485468379 7.90214329 7.599103957 7.702991796 7.586799312 7.838362226 7.916565813 7.739800966 7.713444545 198251103 phn Organic Remediation Herbicides related compound Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 6.981736297 7.003072393 6.842728451 6.725949276 7.325418711 58617270 pstA Stress Phosphate limitation Ehrlichia ruminantium str. Gardel 7.120495284 7.539564636 7.296537651 7.877122973 7.388190911 7.781926289 209954737 ara_fungi Carbon cycling Carbon degradation Hemicellulose Fusarium oxysporum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;genus:Fusarium; 8.809492305 8.056333831 8.219067499 7.944780309 8.940338824 7.803691465 33237574 pstA Stress Phosphate limitation Prochlorococcus marinus subsp. marinus str. CCMP1375 7.29508771 6.753200136 7.156197597 69285372 pulA Carbon cycling Carbon degradation Starch Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 7.768494631 7.518998428 7.354206323 6.973193176 7.337709202 7.617358999 7.632067516 7.633735656 74419098 oxyR Stress Oxygen stress Nitrobacter winogradskyi Nb-255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 7.013257123 7.158959735 7.200833766 237748532 MFS_antibiotic Antibiotic resistance transporter Oxalobacter formigenes OXCC13 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Oxalobacter;species:Oxalobacter formigenes; 7.726483657 7.547498536 7.503596167 7.15632611 7.274831687 7.483557857 7.460568127 7.368629419 83592576 obgE Stress Radiation stress Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 8.414621797 8.320093853 8.128884574 7.797569595 8.479408707 7.993726868 8.472018394 8.249566402 8.631576352 167589710 glx Carbon cycling Carbon degradation Lignin Burkholderia ubonensis Bu superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ubonensis; 7.598439202 7.704197596 8.003027991 8.199336304 7.660521766 8.275404412 7.822299545 8.08533578 7.77450465 12697571 cbdA Organic Remediation Aromatics Chlorinated aromatics Burkholderia sp. TH2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.592000022 7.534936563 7.324136664 6.980046515 7.468167435 7.334340868 7.325000666 7.327746009 7.590051944 160933796 obgE Stress Radiation stress Clostridium leptum DSM 753 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 7.222923684 7.099349316 7.255096651 7.664685998 7.010660842 7.199407283 119945120 CopA Metal Resistance Copper Psychromonas ingrahamii 37 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas;species:Psychromonas ingrahamii; 7.477744052 7.58438538 7.822263054 7.581213724 7.652094708 7.815040471 7.62014172 281404312 hly virulence hemolysin Prevotella copri DSM 18205 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella copri; 7.123534602 7.15502567 7.172642386 7.102200837 6.490797567 7.490923845 6.896178048 7.391275154 23494143 pcaG Organic Remediation Aromatics Other aromatics Corynebacterium efficiens YS-314 7.510716927 7.606572184 7.479655864 7.263971101 7.788743489 7.696359258 7.941515915 7.826628389 7.620679386 157804790 APS_AprA Sulphur adenylylsulfate reductase endosymbiont of Inanidrilus exumae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.234380498 7.214424455 7.315231827 6.846126272 7.041669678 7.544015647 7.050726476 7.048918992 7.43898462 238785862 cydA Stress Oxygen limitation Yersinia bercovieri ATCC 43970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 8.084710484 7.816599842 7.857536968 7.207082642 7.760626765 7.771134564 7.615015535 8.02895401 7.571554567 219850336 glucoamylase Carbon cycling Carbon degradation Starch Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 7.512968338 7.51268846 7.158629416 6.962230071 7.087684987 7.690015284 7.281995714 7.588652533 206589215 ppx Phosphorus Phosphorus utilization Ralstonia solanacearum MolK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 7.548495571 7.097427741 7.836564688 7.583821451 7.407568446 7.525770222 7.306430358 121554272 nahA Organic Remediation Aromatics Polycyclic aromatics Verminephrobacter eiseniae EF01-2 7.489423382 7.318452669 7.467266858 6.835357574 6.956310763 7.435922821 7.073977586 7.355581579 251781552 cydB Stress Oxygen limitation Streptococcus dysgalactiae subsp. equisimilis GGS_124 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus dysgalactiae; 7.020240451 7.072143425 7.263342788 7.065066493 7.438371903 161380540 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 7.343131125 7.275335536 7.693517333 7.264048026 7.574088651 7.223348819 7.09530379 7.044629796 147676340 gyrB other category gyrB Pelotomaculum thermopropionicum SI superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Pelotomaculum;species:Pelotomaculum thermopropionicum; 7.881507633 7.505772102 108798265 pcc Carbon cycling Carbon fixation Mycobacterium sp. MCS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.055229746 7.827876287 8.150981556 7.103308061 7.670023481 7.731109963 7.71254457 7.935422931 7.321787778 209546783 nhh Organic Remediation Aromatics Nitoaromatics Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.793867584 8.127706662 8.050977079 7.74351591 8.494254062 8.036119012 8.113729464 8.215333956 8.334332931 188990877 silC Metal Resistance Silver Xanthomonas campestris pv. campestris str. B100 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 7.866479036 7.397221813 7.435243483 7.613601096 7.646382999 8.102137218 7.706950633 7.517725518 7.626351578 145317951 dmsA Organic Remediation Others Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 7.391868077 7.596095511 7.231897723 7.642493918 145217416 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 7.257583673 7.331534247 7.197259636 7.306726577 6.907527139 7.608301511 7.322729471 7.373689352 7.738219341 45593184 gyrB other category gyrB Geobacter metallireducens superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 7.731780348 7.542511412 7.330370822 7.054517037 7.421942438 253997059 pstA Stress Phosphate limitation Methylotenera mobilis JLW8 7.736320687 7.851700529 7.835233111 7.290519566 7.719499839 7.841075302 7.421589069 255008414 arsM Metal Resistance Arsenic Bacteroides fragilis 3_1_12 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 7.095308597 6.938207239 7.072380025 56909550 obgE Stress Radiation stress Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 7.602136717 7.283452795 7.440248127 6.970974503 7.272425438 7.857190779 7.219988896 7.263262987 7.360508373 149128780 ChrA Metal Resistance Chromium Bacteroides caccae ATCC 43185 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides caccae; 7.448352134 7.533961359 15922615 superoxide_dismutase Bioleaching Metal Resistance Sulfolobus tokodaii str. 7 7.045748242 6.750919142 238702578 iuc virulence aerobactin Yersinia aldovae ATCC 35236 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia aldovae; 7.506715143 7.679918809 7.459219654 7.220154416 7.596503155 187922038 gyrB other category gyrB Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.160331236 7.355636098 7.346687596 6.913384817 7.626489291 7.043891976 7.275326113 258511595 glnA Stress Nitrogen limitation Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 8.270811261 8.452427474 8.232363219 8.421421624 8.648242937 8.153845091 8.593816532 8.529094394 8.570921395 260417035 fnr Stress Oxygen stress Silicibacter lacuscaerulensis ITI-1157 7.545502197 7.44856867 7.743899121 7.67242164 7.533721227 7.985068866 7.617807478 7.164090105 7.508853833 126218145 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Burkholderia pseudomallei 668 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 7.987863682 7.969921227 7.866182191 7.170053676 7.962565213 8.078486189 7.620831154 7.755921778 7.590694747 167624051 pimF Organic Remediation Aromatics Aromatic carboxylic acid Shewanella halifaxensis HAW-EB4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella halifaxensis; 7.481799481 7.795621125 8.208706361 7.630498704 7.714896754 7.439495088 7.918630098 86142874 pmoA Carbon cycling Methane Methane oxidation uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 7.402943928 7.565406081 6.971686743 6.984388755 7.173447697 7.614560411 7.542327923 7.440987843 7.258163613 77968899 CopA Metal Resistance Copper Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.0023414 8.108350548 7.703894202 7.61821822 8.120236379 7.911683621 7.858992843 7.688423298 146348553 nifH Nitrogen Nitrogen fixation Clostridium kluyveri DSM 555 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium kluyveri; 7.906665362 8.06412505 7.381558573 7.489209988 7.991313475 7.971946276 8.312839156 8.230926992 8.108805784 191162438 cytochrome Energy process Energy process Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 7.789950146 7.826626366 7.56936187 7.22530572 7.587093838 7.756388084 7.561013514 7.444799435 7.556401469 54308677 dnaK Stress Heat shock Photobacterium profundum SS9 7.241767534 7.398344428 7.04497719 86138871 ppx Phosphorus Phosphorus utilization Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.36368086 7.795764172 7.508224989 7.175395674 7.674324717 7.479106551 7.139067194 7.669965042 158424137 gyrB other category gyrB Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 7.329275817 7.232125909 7.409496007 7.292976333 7.635724264 75430044 ppx Phosphorus Phosphorus utilization Actinobacillus succinogenes 130Z superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus succinogenes; 7.17975083 7.143155318 6.903800108 206577106 MFS_antibiotic Antibiotic resistance transporter Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 7.90990904 7.8216183 7.80883014 7.71350564 7.613269504 7.621243475 62003577 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.04361295 7.903960636 7.67282239 7.633587545 7.976272468 7.974305061 8.01065764 8.035606708 162454876 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 8.143710916 7.990519153 7.771691115 7.84465566 7.925523388 8.146176826 7.893763609 7.896831556 7.865100015 115520300 fnr Stress Oxygen stress Rhodopseudomonas palustris BisA53 7.172325739 7.902570536 7.850916331 7.645075993 7.813837634 7.836667029 7.533662081 7.718828255 7.664395523 116099724 glnR Stress Nitrogen limitation Lactobacillus brevis ATCC 367 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus brevis; 7.351361461 7.192729454 7.770697236 7.435613239 7.610895103 7.335143502 7.676288822 7.34504972 7.789609395 161378130 pmdAB Organic Remediation Aromatics Others Pseudomonas putida KT2440 7.787841376 7.970012242 7.455856189 7.326027114 7.905698968 7.926775062 7.904379086 7.440955203 8.06489609 187477121 nagI Organic Remediation Aromatics Aromatic carboxylic acid Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 7.36919761 7.19340707 7.8797961 8.126894963 7.737350762 7.981958125 7.655195911 7.901813892 8.170517726 251789704 vip virulence virulence protein Dickeya zeae Ech1591 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 7.280933784 7.255860575 7.40209204 7.431823972 7.676104178 7.060627741 7.625430638 75674640 obgE Stress Radiation stress Nitrobacter winogradskyi Nb-255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 8.543678276 7.749180196 7.809842704 8.936406152 8.85991864 9.043700363 8.402265567 8.398315426 8.263936471 160896114 AceB Carbon cycling Carbon degradation others Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.339223252 7.202428659 7.291193142 7.093621472 6.950715321 7.534341674 7.1234931 7.210772192 7.422716454 71906990 carA Organic Remediation Aromatics Heterocyclic aromatics Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 8.028988676 8.180396476 7.865559734 7.30428151 8.017438069 7.826049692 7.717031824 7.912278499 87200826 proO Organic Remediation Aromatics Other aromatics Novosphingobium aromaticivorans DSM 12444 7.630939582 7.655785687 7.506184488 7.510732539 7.221882605 7.693077382 7.456045525 7.565846141 7.597174151 86167202 ChrA Metal Resistance Chromium Synechococcus sp. RS9917 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.196010188 6.997168816 6.850592749 91783875 atzB Organic Remediation Herbicides related compound Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.694179888 7.864306674 7.366144521 7.807049434 7.666699455 7.567391191 7.536086212 7.601976457 126320024 Catechol Organic Remediation Aromatics Other aromatics Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.743629168 7.821039038 7.788818509 7.818826525 7.970621072 7.73929726 7.800516901 7.62226095 253988529 type_III_secretion virulence secretion Photorhabdus asymbiotica superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus; 7.284806469 7.174362766 7.036979058 91781613 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.594387285 7.384229036 7.378445086 7.041780089 7.309000557 7.625342925 7.523859329 7.364831443 7.509313418 26106116 bphF1 Organic Remediation Aromatics Polycyclic aromatics Pseudomonas resinovorans 7.238121216 7.262987658 6.752645798 7.515680403 66508573 mdlB Organic Remediation Aromatics Aromatic carboxylic acid Apis mellifera superkingdom:Eukaryota;kingdom:Metazoa;phylum:Arthropoda;class:Insecta;order:Hymenoptera;family:Apidae;genus:Apis; 7.807148334 7.749535218 7.648418103 7.335303906 8.008734842 7.880891257 7.727966544 7.76338817 7.870205654 14495290 nicdehydr Organic Remediation Aromatics Heterocyclic aromatics Arthrobacter nicotinovorans superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.24618298 7.211824803 7.098044022 7.028440569 7.093216957 24418998 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.226919707 7.768853339 7.81683766 7.668014879 8.196509479 8.013465566 7.998960587 7.883857363 8.091459996 114799451 cydA Stress Oxygen limitation Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 7.702305288 7.470949393 6.990579144 7.372524364 7.339851808 6.958086494 18376595 B_lactamase_C Antibiotic resistance Beta-lactamases Enterobacter cloacae subsp. dissolvens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 7.207149486 7.213817089 7.568659323 7.347734519 7.574084764 198263437 nasA Nitrogen Assimilatory N reduction gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.081481443 6.970789187 7.12867712 7.1620744 7.167628702 7.389855319 6.959291003 7.017005058 242773234 glx Carbon cycling Carbon degradation Lignin Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 8.38425639 7.86397091 7.748531743 7.968851354 7.827737251 7.84581491 7.621761208 7.797322628 164614387 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.318478788 7.355986592 116619510 sigma_24 Stress Sigma factors Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 7.964113029 7.677331092 7.658910532 7.487041622 7.871358961 8.023428914 7.533958942 8.036850332 229163776 katE Stress Oxygen stress Bacillus cereus R309803 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 7.078345262 6.959430886 7.161736337 6.521715305 7.199982903 50982446 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7.807311515 7.574081425 7.434800918 7.135549188 7.234374284 7.845457231 7.416679099 7.086214114 7.375402265 223470338 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.737414551 7.4920234 7.348436943 7.559680168 7.884401636 8.110662272 7.820411966 7.318248318 7.845056941 126095839 ahpC Stress Oxygen stress Pichia stipitis CBS 6054 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Scheffersomyces;species:Scheffersomyces stipitis; 7.83209158 7.914964388 8.107986675 8.399513773 7.99744839 7.856716546 87311474 ppx Phosphorus Phosphorus utilization Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 7.268131651 7.243924081 7.200467034 7.481073422 7.320674953 6.964617918 7.513733397 7.487585658 260901408 amyA Carbon cycling Carbon degradation Starch Vibrio parahaemolyticus AQ4037 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.218404693 7.042078594 7.187861684 7.413421897 6.940242256 7.819654134 92118905 narI Stress Oxygen limitation Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 6.718538521 7.475200664 256642343 ABC_antibiotic_transporter Antibiotic resistance transporter Acetobacter pasteurianus IFO 3283-22 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pasteurianus; 7.211087548 7.263143441 7.036899879 6.980359804 7.691169409 7.332773243 7.164520543 154687006 ara Carbon cycling Carbon degradation Hemicellulose Bacillus amyloliquefaciens FZB42 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 7.552177927 7.407502638 7.043602841 7.390000561 7.31611443 7.403841102 7.45149153 260408006 hly virulence hemolysin Acinetobacter sp. RUH2624 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter genomosp. 13TU; 7.527381878 7.419146213 7.46599394 7.132832334 7.702265364 220722330 katE Stress Oxygen stress Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 7.647686975 7.546779159 7.574885281 7.191211636 7.496919477 7.423360577 7.248684814 7.673407625 213536715 exoglucanase Carbon cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.772830725 7.946790797 7.475263795 7.716169579 7.920908803 46115650 tftH Organic Remediation Aromatics Chlorinated aromatics Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 7.802120673 7.296992966 7.411041009 7.181190255 7.476351294 190687648 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 7.461536257 7.291664466 7.042411744 6.951024421 7.303345431 7.140399453 7.253222272 119226052 pheA Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 7.177132583 7.280277819 7.954420916 8.130565326 7.493691486 8.072205869 7.713189046 7.401419488 7.592620678 91200421 pimF Organic Remediation Aromatics Aromatic carboxylic acid Candidatus Kuenenia stuttgartiensis superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;genus:Candidatus Kuenenia; 6.79074599 7.706572418 254464662 glnA Stress Nitrogen limitation Rhodobacterales bacterium Y4I 7.117479283 7.168000729 7.470571235 7.398806255 7.307551906 7.735896442 94967393 fnr Stress Oxygen stress Candidatus Koribacter versatilis Ellin345 6.990352456 6.749698596 218764994 pstB Stress Phosphate limitation Desulfurococcus kamchatkensis 1221n 7.064599859 7.175978352 7.238836136 42741714 ZntA Metal Resistance Zinc Alcaligenes faecalis 7.258644425 7.257671013 7.313781209 7.364066289 7.628709952 7.361609419 7.296439128 151280550 sigma_24 Stress Sigma factors Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 7.402533432 7.737802688 7.50454808 7.550292675 7.338802941 7.314759222 7.425163518 218323412 ChrA Metal Resistance Chromium Vibrio splendidus LGP32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 7.039713395 6.99272198 210150777 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Clostridium nexile DSM 1787 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium nexile; 7.09995016 6.616808632 7.147847249 35210349 gyrB_gene Bioleaching other category Sulfobacillus acidophilus superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Sulfobacillus; 7.7323975 7.64331481 7.577795532 7.648659708 7.735804531 7.631131924 7.852901064 8.337035981 7.74005525 146303650 ABC_transporter_I Bioleaching other category Metallosphaera sedula DSM 5348 8.201690872 7.380983822 7.59640524 7.932864639 7.771829375 8.049034427 7.632124676 7.96436559 152970669 mhpC Organic Remediation Aromatics Aromatic carboxylic acid Klebsiella pneumoniae subsp. pneumoniae MGH 78578 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 7.812886999 7.833282387 8.00681289 7.771075549 8.104505019 8.080036078 8.014857532 7.927785168 7.708387613 46307932 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.741532021 7.917053096 8.069376538 7.34545197 7.997494526 7.866590749 7.729507807 7.969725755 7.874463489 256545970 ahpC Stress Oxygen stress Anaerococcus vaginalis ATCC 51170 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Anaerococcus;species:Anaerococcus vaginalis; 7.678922321 7.397975744 7.327016727 7.368562619 7.173116213 7.688321459 78166410 sigma_24 Stress Sigma factors Chlorobium luteolum DSM 273 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon luteolum; 7.332477203 7.481697215 7.56045606 7.512228677 7.521475742 7.828041794 7.298028946 7.595859254 7.517144805 219563166 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 7.823241704 7.908026767 7.367944089 7.658439527 7.978420864 7.841390037 7.808890323 7.523362397 7.927515588 15140904 CopA Metal Resistance Copper Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 8.087928845 7.862390414 7.746791078 7.567372046 7.588271108 7.82768795 7.720689683 8.119815465 7.270557007 157960682 obgE Stress Radiation stress Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 6.935323368 7.095945913 7.163691082 260905846 pstB Stress Phosphate limitation Brevibacterium linens BL2 8.190413163 8.11150057 8.097734511 7.843533292 8.521051694 8.04788153 8.373601356 8.091959172 8.32775675 70727536 amyA Carbon cycling Carbon degradation Starch Staphylococcus haemolyticus JCSC1435 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus haemolyticus; 7.084041781 7.293819171 6.747279791 7.446897197 6.938261416 6.901821953 7.393597165 110635703 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 8.096057774 7.793901996 7.470406305 7.592378497 7.877711799 7.852229453 7.51024925 7.339493142 151281483 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 7.458763099 7.381600985 7.628835199 7.000806594 7.509903989 7.479557309 7.585794622 7.46694186 51243149 pcpE Organic Remediation Herbicides related compound Sphingomonas sp. tfd44 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.402979567 8.309975633 8.008826866 7.304670232 8.086809816 8.081264076 8.004395125 7.830748272 8.264054077 145206312 nifH Nitrogen Nitrogen fixation Prosthecochloris vibrioformis DSM 265 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeovibrioides; 7.642268717 7.873020177 7.794624368 7.373871245 7.772025631 7.998124003 7.457997866 7.574948135 109700689 CopA Metal Resistance Copper Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 7.327174778 7.254504218 7.221511618 6.851259687 7.057922913 7.503196626 27376013 amyA Carbon cycling Carbon degradation Starch Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.759039387 7.427172738 7.398018585 6.90170898 7.365744204 7.479173259 7.349297964 7.478489103 160900630 pilin virulence pilin Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.400664221 7.493265589 7.476600034 7.206794722 7.596315355 7.837296525 7.714105102 7.717817787 75907651 amyA Carbon cycling Carbon degradation Starch Anabaena variabilis ATCC 29413 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena variabilis; 7.433266572 7.495106055 7.268598182 6.953149536 7.696353656 118732697 pbrA Metal Resistance Lead Delftia acidovorans SPH-1 7.311270854 7.757480759 8.113501746 8.096151133 7.804146724 7.944239153 8.059441634 8.015674837 8.190823736 52080021 ahpC Stress Oxygen stress Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 7.224430682 7.003840326 7.319975986 7.147621667 7.160548291 7.694187669 7.605352933 7.658408552 166363555 hrcA Stress Heat shock Microcystis aeruginosa NIES-843 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 7.887517019 7.47903632 7.915670429 7.80032095 7.783165863 193160558 APS_AprA Sulphur adenylylsulfate reductase uncultured bacterium 7.284452403 7.48316209 7.183568605 7.261241589 6.975305033 7.458219049 7.223445694 152982939 SilA Metal Resistance Silver Janthinobacterium sp. Marseille 7.582680485 7.664268064 7.909442816 7.517905483 7.84339965 7.790766375 8.056502141 7.847201026 146146926 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.180784645 7.333611983 7.083822582 7.029166778 6.996613706 7.417027629 158447725 CadA Metal Resistance Cadmium Peptostreptococcus micros ATCC 33270 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;species:Parvimonas micra; 7.331283579 6.70202521 7.103577966 115259894 fnr Stress Oxygen stress Rhizobium leguminosarum bv. viciae 3841 7.660673645 7.797856504 7.724552117 7.396609792 7.839191941 8.212825608 7.78045534 7.550524141 7.731550616 189333288 alkK Organic Remediation Others Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 7.622613684 7.784567373 7.689154189 7.977496014 7.89048382 7.589217164 7.797057052 7.775743115 83845930 glnA Stress Nitrogen limitation Sulfitobacter sp. EE-36 8.11872097 7.997978198 7.900331625 8.274778201 8.14133079 7.814923366 7.757834842 7.992840137 7.975335268 21616728 phenol_oxidase Carbon cycling Carbon degradation Lignin basidiomycete C30 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 7.781275311 7.164285513 7.325393284 7.372470705 7.391225178 7.677581612 7.380515417 7.120118807 214040586 ara Carbon cycling Carbon degradation Hemicellulose Marinitoga piezophila KA3 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Marinitoga;species:Marinitoga piezophila; 7.240913593 7.216977103 7.314354664 7.148736519 7.042537261 7.531302939 7.206461753 7.179249825 7.141942083 120553798 pilin virulence pilin Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 7.020308429 7.133688154 7.178136891 7.033914457 7.396988571 7.176198366 6.843163827 117559996 SMR_antibiotics Antibiotic resistance transporter Aeromonas hydrophila subsp. hydrophila ATCC 7966 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas hydrophila; 7.68153625 7.684096741 7.665964874 7.092210646 7.872115882 7.85995571 7.787090117 7.662796331 212560818 glnA Stress Nitrogen limitation Anoxybacillus flavithermus WK1 7.284512713 7.045396566 7.189659554 84379187 sigma_38 Stress Sigma factors Vibrio splendidus 12B01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 7.505460542 7.442486263 7.511138436 7.749772385 7.732482017 7.783010827 7.559714179 7.374416297 155964461 nasA Nitrogen Assimilatory N reduction uncultured marine bacterium superkingdom:Bacteria; 7.176093063 7.310310205 119955804 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8.215301696 8.068595818 7.818613986 7.775855557 7.876170746 7.801955538 7.729685887 7.748682399 7.420791198 34397683 ppx Phosphorus Phosphorus utilization Porphyromonas gingivalis W83 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas;species:Porphyromonas gingivalis; 7.399648648 7.198765443 7.188162992 7.080524574 6.913682763 227196593 fnr Stress Oxygen stress Lactobacillus ruminis ATCC 25644 7.288337022 7.222487403 256812058 katE Stress Oxygen stress Streptomyces griseoflavus Tu4000 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoflavus; 8.193081973 8.066186017 7.843730611 7.894678898 8.20565796 8.253860568 8.104872309 8.001963671 8.189635987 148569332 sigma_70 Stress Sigma factors Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 7.74039449 7.869325175 7.690702978 7.517086753 7.909486833 7.835036801 7.967408296 7.803347072 7.678776273 254477149 pcc Carbon cycling Carbon fixation Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.023289569 6.882723143 7.05961978 6.79133458 7.41027276 32446677 cydA Stress Oxygen limitation Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 7.364261955 7.246969919 7.074392872 7.676862938 7.728328479 7.430725614 7.706927143 188995579 grpE Stress Heat shock Porphyromonas gingivalis ATCC 33277 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas;species:Porphyromonas gingivalis; 8.197264716 8.414329431 8.311585598 8.53833042 8.770900906 8.142912998 8.624421767 8.409924185 8.427357303 261311680 phoB Stress Phosphate limitation Mannheimia haemolytica serotype A2 str. BOVINE superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Mannheimia;species:Mannheimia haemolytica; 7.403555457 7.281062343 37726856 dsrB Sulphur sulfite reductase uncultured prokaryote 7.397615396 7.343811457 7.25927985 7.053982849 6.974123971 7.584153083 120553846 ArsC Metal Resistance Arsenic Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 7.277736943 7.166831683 109897596 pcc Carbon cycling Carbon fixation Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 7.134807665 7.076627646 197087332 cytochrome Energy process Energy process Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 7.913887173 8.150258644 8.209368983 7.803154863 8.194298927 8.179420751 7.975780305 8.09283377 7.768657336 18146819 pectinase Carbon cycling Carbon degradation Pectin Aspergillus oryzae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 7.056579989 7.078450372 6.844038295 6.923855731 7.358444721 7.297984287 6.997459631 84778385 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6.827204965 7.16453761 7.504467953 7.140912772 7.218923886 139003695 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.002408303 6.833104431 7.048784551 6.923827775 7.211115994 115401820 BpH Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.736501663 7.596276132 7.412499231 7.233808706 7.470569249 7.579849913 7.489555442 7.450059622 7.577000155 254785329 sigma_24 Stress Sigma factors Teredinibacter turnerae T7901 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 7.762097537 7.481009863 7.64498442 7.706839327 7.217973699 7.709585988 7.238646985 7.405414402 222527412 AceA Carbon cycling Carbon degradation others Chloroflexus sp. Y-400-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus; 7.865647693 7.683610454 7.59041518 7.483269956 7.735899681 7.919046736 7.909835155 7.523915328 7.682667445 32490765 gyrB other category gyrB Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Wigglesworthia;species:Wigglesworthia glossinidia; 7.35381879 7.163729934 7.20197345 6.786218226 6.971338093 7.346141963 239814639 glnA Stress Nitrogen limitation Variovorax paradoxus S110 7.191407903 7.534749802 7.79200652 8.009838402 7.689292229 8.133395641 7.731308152 7.474110985 7.647239755 19914835 cydB Stress Oxygen limitation Methanosarcina acetivorans C2A superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina acetivorans; 7.298727459 7.005470839 193248522 phenol_oxidase Carbon cycling Carbon degradation Lignin Cryptococcus bacillisporus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Tremellomycetes;order:Tremellales;family:Tremellaceae;genus:Filobasidiella;species:Filobasidiella bacillispora; 7.121029251 6.993255083 7.314871859 7.239612501 7.36883331 7.096435717 6.838810351 84696894 nitA Organic Remediation Aromatics Other aromatics Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 7.027076986 7.350328091 26989163 ahpF Stress Oxygen stress Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.494938867 7.04599476 7.212440244 6.933660038 7.45563446 7.280283766 7.456314968 6.872740729 1698442 acetylglucosaminidase Carbon cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.997638511 7.887544523 7.685797086 7.356778461 7.665136372 7.717581114 7.477267948 7.381035734 7.339927621 114705344 proV Stress Osmotic stress Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 7.764262015 7.953886609 7.978911563 7.095703977 7.954479793 8.06719994 8.255143201 88643147 dsrB Sulphur sulfite reductase uncultured prokaryote 7.540773061 7.729528096 7.257343359 119945682 linB Organic Remediation Pesticides related compound Psychromonas ingrahamii 37 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas;species:Psychromonas ingrahamii; 7.455898081 6.88451207 256671212 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7.388359544 7.363696355 6.72485959 7.495137013 7.304499961 7.361721862 84043111 Catechol Organic Remediation Aromatics Other aromatics uncultured bacterium 7.368906748 7.257672811 7.50109334 7.47809123 7.370626495 7.942932412 7.495020717 7.21587887 7.456670064 211906023 mcrA Carbon cycling Methane Methane production uncultured archaeon superkingdom:Archaea; 7.206844543 7.09754638 7.080511148 6.83267326 7.647972456 7.363726165 7.36325222 146410203 fnr Stress Oxygen stress Bradyrhizobium sp. BTAi1 8.027762321 8.029983425 8.145043163 8.669521355 8.257237446 8.096433348 8.207606052 7.724554982 146338542 exaA Organic Remediation Chlorinated solvents Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.373669384 7.198549386 269121230 cap virulence capsule Sebaldella termitidis ATCC 33386 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteria;order:Fusobacteriales;family:Fusobacteriaceae;genus:Sebaldella;species:Sebaldella termitidis; 7.574313181 7.838164234 7.399622556 7.113077801 7.245642662 7.272620192 7.162159467 7.463650606 257060628 pstB Stress Phosphate limitation Cyanothece sp. PCC 8802 7.321514987 7.247640117 157914579 fnr Stress Oxygen stress Salinispora arenicola CNS-205 7.722443412 7.965585375 7.793305319 7.424169716 8.325734091 8.006894941 7.937473582 8.243405444 8.154392675 114771792 nagG Organic Remediation Aromatics Aromatic carboxylic acid alpha proteobacterium HTCC2255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.091093728 7.469821614 152986276 exochitinase Carbon cycling Carbon degradation Chitin Pseudomonas aeruginosa PA7 8.637695368 8.309059883 8.133224488 8.14185647 8.22675419 8.079881287 8.241295443 7.80206709 20808022 trzA Organic Remediation Herbicides related compound Thermoanaerobacter tengcongensis MB4 7.504619452 7.662448561 7.380812989 7.467762893 7.569434259 7.479219613 7.996633861 10173152 alkH Organic Remediation Other Hydrocarbons Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 7.448033947 7.243031874 7.053286064 7.16115552 6.865417777 127511209 cytochrome Energy process Energy process Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 7.757832766 7.589603678 7.326555036 7.522938831 7.174241965 7.245527265 134096397 silP Metal Resistance Silver Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 7.425235467 7.716470443 7.015141949 8.29400848 7.804712808 7.903177916 7.771941476 7.780292236 7.840405856 223470331 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.989905019 8.069400912 7.958973685 7.683063229 8.189610135 7.85807819 7.91835857 7.725097841 8.226958494 115365770 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 7.295690318 7.280798132 7.508640749 7.275522083 7.40595195 7.329808957 7.385475763 114316806 oxyR Stress Oxygen stress Granulibacter bethesdensis CGDNIH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 7.68935579 7.653628786 7.401146771 7.40307478 7.770106442 7.762539877 7.405399591 7.111416292 7.459358847 39933084 gyrB other category gyrB Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.240462824 7.17983707 7.419497565 7.147721126 7.128529955 7.559235541 7.388429816 7.237473986 239910456 pstB Stress Phosphate limitation Thermococcus gammatolerans EJ3 7.242801339 7.133685349 7.260040913 6.993083405 6.902567955 7.201319656 6.913847546 7.103781268 63020531 alkB Organic Remediation Other Hydrocarbons Acinetobacter venetianus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 6.985209488 6.963999592 6.740207339 7.292016768 7.142214175 6.988677669 7.426681491 21694047 endoglucanase Carbon cycling Carbon degradation Cellulose Phanerochaete chrysosporium superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 7.645357139 7.54323738 7.3618951 7.20831336 7.974946085 7.41972555 7.267666743 7.477055201 89473874 nifH Nitrogen Nitrogen fixation uncultured cyanobacterium superkingdom:Bacteria;phylum:Cyanobacteria; 7.229096443 6.907883523 7.120124583 218170672 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Cyanothece sp. PCC 7424 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.604925222 7.901673807 7.384033497 7.079605612 7.694033557 7.583523312 7.615936274 7.616106879 148657248 mer Metal Resistance Mercury Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 7.453579555 7.855190612 7.578483664 8.24403745 7.135325906 7.771673129 7.748662943 7.559569239 7.874704627 121605012 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 8.152298749 7.895609398 7.475903844 7.669133175 8.040519599 7.806097352 7.746007754 7.776168805 7.967233162 86570709 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.014763809 8.063251751 7.890021912 7.9726819 7.880074989 8.075701693 7.869669187 8.018511178 7.926791403 259417918 sigma_32 Stress Sigma factors Silicibacter sp. TrichCH4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.278455344 7.297719988 7.262400228 7.321075876 7.204394125 13399276 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Streptomyces olivaceoviridis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7.617864747 7.886370205 8.379223969 7.900411462 8.000710063 7.998491149 7.947607868 8.287297158 7.85798766 213956947 dmsA Organic Remediation Others Propionibacterium acnes SK137 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 8.481121336 8.48369568 8.123387636 8.368092621 8.692550132 8.446056017 8.453159168 8.451726614 8.148001348 63081858 nosZ Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 7.946703431 8.119201571 8.07299224 7.839742633 8.46911371 7.800485422 8.235247911 8.157332347 7.970018838 209872521 sox Sulphur Sulphur oxidation Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 7.498566916 7.617485706 7.475675703 7.628721938 7.434158882 7.484964689 7.738321411 126035177 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.385566542 7.162314959 6.850035805 7.569387256 7.388562438 7.506055857 7.568627483 163749025 fnr Stress Oxygen stress Shewanella benthica KT99 7.516148622 7.51084382 7.339080406 7.288157828 7.396592717 7.21256828 119459315 mdlC Organic Remediation Aromatics Aromatic carboxylic acid marine gamma proteobacterium HTCC2080 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.600267811 7.778477502 7.739095928 7.257257393 7.310398577 7.587159766 7.627806973 7.690274295 118659716 TehB Metal Resistance Tellurium Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 8.409128652 8.373286572 8.064032167 8.343779251 8.768210424 8.472849042 8.191084224 8.331574332 84517014 pimF Organic Remediation Aromatics Aromatic carboxylic acid Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 7.293987785 7.126111045 7.045648889 7.492445368 7.214235213 7.176964755 161160968 katE Stress Oxygen stress Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 7.923679721 7.682021106 7.330773364 7.352666114 7.582974803 7.829110621 7.677310339 7.474401446 7.704987351 34498949 norB Nitrogen Denitrification Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 7.720248143 7.936258981 7.773359721 8.007266149 7.515803065 7.4236167 7.555822511 8.007782053 194012981 nmoA Organic Remediation Aromatics Nitoaromatics Bacillus pumilus ATCC 7061 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pumilus; 6.758867804 6.972539179 169630097 mer Metal Resistance Mercury Mycobacterium abscessus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.823587116 7.562392182 7.504931122 7.37787489 7.534437153 7.894425724 7.441871051 7.313676759 7.593560599 133778516 endochitinase Carbon cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 8.046932669 7.683512854 7.339544535 7.658025963 7.567065642 7.895573518 7.765499375 7.361479675 7.424455465 157851146 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.261486698 8.090700886 7.740376585 7.362628926 7.497443051 7.752554248 7.738674603 7.551103192 121712291 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7.381467535 7.372590224 7.142000242 7.873965796 7.452002288 7.242175712 7.695774634 90440224 oxyR Stress Oxygen stress Vibrio angustum S14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium angustum; 7.496989553 7.682293592 7.505745978 7.072316535 7.776079849 7.693151274 7.498531141 7.511241614 7.693659103 237879732 fnr Stress Oxygen stress Burkholderia glumae BGR1 8.213862008 8.359007129 8.104136457 7.975153971 8.627939215 8.452627885 8.64228294 8.682415442 8.32895383 227502463 fnr Stress Oxygen stress Corynebacterium accolens ATCC 49725 7.756429026 7.289538267 7.212969204 7.098995687 7.370429217 20906550 pstA Stress Phosphate limitation Methanosarcina mazei Go1 7.545771942 7.189859983 7.029609526 6.792115512 7.412490659 6.987692072 7.194739376 119402003 BpH Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7.447401211 7.462724151 6.958502997 7.063040724 7.184264003 7.472050078 261602099 pstC Stress Phosphate limitation Sulfolobus solfataricus 98/2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus;species:Sulfolobus solfataricus; 7.075527842 7.4617483 7.086090123 196193047 obgE Stress Radiation stress Alcanivorax sp. DG881 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 7.978317671 7.918832742 7.869545417 7.876623539 8.245180406 8.586302809 7.84940378 7.939844564 7.81814464 82703406 glnA Stress Nitrogen limitation Nitrosospira multiformis ATCC 25196 7.786731131 7.402384716 7.432604336 7.63293263 7.664468336 7.82287028 7.597991068 225037764 sigma_70 Stress Sigma factors Blautia hydrogenotrophica DSM 10507 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Blautia;species:Blautia hydrogenotrophica; 7.723666781 7.489009431 7.282111781 7.694571812 7.63278414 7.632084832 7.223916218 7.444731765 71039474 pimF Organic Remediation Aromatics Aromatic carboxylic acid Psychrobacter arcticus 273-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter arcticus; 7.51257542 7.343916424 7.317319343 7.422058212 7.681330033 7.54107015 7.660339457 6.977837929 159039026 proV Stress Osmotic stress Salinispora arenicola CNS-205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 7.961081643 7.904187835 7.882211457 8.112212549 8.310105188 7.579664808 8.100126798 229611208 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.72280587 7.275588596 7.637164338 7.595547762 7.918334836 9971297 gyrB other category gyrB Oceanobacter kriegii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Oceanobacter; 7.011797263 7.303062695 84778502 gyrB other category gyrB Sodalis glossinidius str. 'morsitans' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Sodalis;species:Sodalis glossinidius; 7.421191695 7.404844292 7.464129199 7.354250702 7.705486145 8.259561993 7.336551549 7.485252015 7.550961636 126096111 nagG Organic Remediation Aromatics Aromatic carboxylic acid Pichia stipitis CBS 6054 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Scheffersomyces;species:Scheffersomyces stipitis; 7.38062425 7.494631801 7.152299867 7.65083678 7.686572342 7.56604202 7.680152317 160897042 pstB Stress Phosphate limitation Delftia acidovorans SPH-1 7.334176647 7.631252844 7.556795608 6.852625175 7.165897617 7.835493846 7.489815125 7.30263548 7.507198601 10039317 gyrB other category gyrB Flexibacter filiformis superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;genus:Chitinophaga; 6.867660986 7.060067048 7.111367712 6.868597193 6.81522958 212539744 nagG Organic Remediation Aromatics Aromatic carboxylic acid Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 6.969504903 7.167578788 6.71256412 7.209436782 178468494 TerC Metal Resistance Tellurium Streptomyces griseus subsp. griseus NBRC 13350 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 7.075437928 6.974220957 7.057924965 223457676 ChrA Metal Resistance Chromium Prevotella copri DSM 18205 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella copri; 7.458092425 7.323197286 7.324810809 7.338408451 7.228674898 7.34824711 7.308107083 7.444005737 117648454 hrcA Stress Heat shock Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 7.901822788 7.291158577 7.254545652 7.236256499 7.291168899 8.095299621 7.329363516 7.252727652 7.206169469 63029751 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.135697027 6.920317558 163667844 CopA Metal Resistance Copper Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 7.527225216 7.449954347 7.658083044 7.375298109 7.768320057 197316170 pstC Stress Phosphate limitation Vibrio fischeri MJ11 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Vibrio fischeri; 7.145270207 6.66801174 6746606 grpE Stress Heat shock Vibrio proteolyticus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.793699538 8.340212973 7.960469299 7.943319395 7.730705036 8.333925914 8.294957139 8.207948697 8.666373733 254361082 pilin virulence pilin Mannheimia haemolytica PHL213 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Mannheimia;species:Mannheimia haemolytica; 7.645604951 7.883704665 7.620403665 7.832922988 7.806210997 7.226718545 7.756048847 86553796 ahpC Stress Oxygen stress Synechococcus sp. JA-3-3Ab superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.994977668 8.018655689 7.91975778 7.637948199 7.903024566 7.767193547 8.146355436 7.642237728 8.230779378 140846367 phoA Stress Phosphate limitation Corynebacterium glutamicum R superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 7.239252374 7.782651093 7.289608469 7.503468435 6.936936478 7.101820729 157960449 cytochrome Energy process Energy process Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 7.839371381 7.393787228 7.543564715 7.606253488 7.268439605 7.922349146 7.80861746 7.380017435 71728342 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Xylella fastidiosa Ann-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xylella;species:Xylella fastidiosa; 7.645637496 7.471937771 7.521004886 7.291175236 7.539733836 254354257 sigma_38 Stress Sigma factors Legionella drancourtii LLAP12 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella;species:Legionella drancourtii; 7.146486216 6.842009723 242280930 pstC Stress Phosphate limitation Desulfovibrio salexigens DSM 2638 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio salexigens; 7.713766187 7.472762595 7.209564363 7.15725186 7.209936872 7.791615028 7.341876123 7.322159684 7.025724961 114327008 exaA Organic Remediation Chlorinated solvents Granulibacter bethesdensis CGDNIH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 7.622136486 7.665833213 7.462363489 7.2442933 7.417489044 8.070662671 7.400607448 7.223388891 78183723 sigma_70 Stress Sigma factors Synechococcus sp. CC9902 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.108073989 7.164501599 229543291 katE Stress Oxygen stress Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 8.049887443 7.972776366 7.76010304 7.282325778 7.678420895 7.788646131 7.803631507 7.845070513 60686971 arsenic_resistance_gene Bioleaching Metal Resistance Acidithiobacillus caldus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus; 7.465752459 7.760393486 7.260258108 7.678327563 7.605293957 7.394174643 7.426926102 85716428 glnA Stress Nitrogen limitation Nitrobacter sp. Nb-311A 7.849213857 7.732143805 7.353441182 7.662990457 7.231209043 7.49356935 7.726001516 7.297771384 152979372 TehB Metal Resistance Tellurium Actinobacillus succinogenes 130Z superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus succinogenes; 7.238370961 7.494787304 8.050377505 7.327018589 7.910071058 7.165561435 7.268302876 158318648 tfdA Organic Remediation Aromatics Chlorinated aromatics Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8.235840286 7.561564211 8.188459998 7.45043947 7.868192752 7.864033942 7.731580021 7.774968186 7.671668732 150392302 pstB Stress Phosphate limitation Alkaliphilus metalliredigens QYMF 7.631068174 7.481097797 7.607798356 7.121675309 6.971822504 7.847090789 7.528474975 7.244172636 7.357269788 70733568 cytochrome Energy process Energy process Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.220653351 7.617266154 8.349295299 8.321817745 7.980211346 8.396947178 7.978373061 8.046611736 8.1495616 206685273 glnA Stress Nitrogen limitation Rhodobacterales bacterium Y4I 8.0589682 7.964163095 7.727948473 7.698048311 7.986524274 7.895865658 7.937679208 8.186368005 7.562440714 148262172 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 7.273115181 7.260396426 7.061019272 7.02703698 7.191372776 7.574462713 7.321981786 6.971348176 86358542 fnr Stress Oxygen stress Rhizobium etli CFN 42 7.599793697 7.647680846 7.59517295 7.020273345 7.272453451 7.308789728 187719862 ChrA Metal Resistance Chromium Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.424549843 7.413115437 7.303699099 7.189059993 7.751570068 8.071806555 7.502673521 7.518450747 7.584331712 83363145 linC Organic Remediation Pesticides related compound Rhodobacter sphaeroides ATCC 17029 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 7.624691016 7.259284575 7.071933402 7.426087813 7.529275778 7.46054558 7.543632628 258526147 nrfA Nitrogen Dissimilatory N reduction Desulfurivibrio alkaliphilus AHT2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfurivibrio;species:Desulfurivibrio alkaliphilus; 8.28074579 8.039261126 7.753589795 7.565254595 7.91972163 8.017915666 8.008782616 7.954119423 7.598053992 171779076 CopA Metal Resistance Copper Streptococcus infantarius subsp. infantarius ATCC BAA-102 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus infantarius; 7.269002133 7.079495424 7.156925833 7.090662489 6.997772033 7.557282714 156972832 SMR_antibiotics Antibiotic resistance transporter Vibrio harveyi ATCC BAA-1116 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 7.336729696 7.077848899 7.135068267 6.998600608 6.910725176 22299679 fnr Stress Oxygen stress Thermosynechococcus elongatus BP-1 7.423950297 6.920379176 7.164031555 6.810288632 6.65889741 7.424754659 125 CODH Carbon cycling Carbon fixation 6.998646694 7.178116538 7.165355616 6.91776372 7.387634097 257867277 xylA Carbon cycling Carbon degradation Hemicellulose Enterococcus casseliflavus EC30 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus casseliflavus; 7.499462696 7.386323954 7.658982567 7.065336544 6.867744244 7.867123807 77814691 ppx Phosphorus Phosphorus utilization Shewanella putrefaciens CN-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella putrefaciens; 7.683018998 7.586268062 7.153105721 7.495477137 7.547519289 7.299015577 149928308 AceB Carbon cycling Carbon degradation others Limnobacter sp. MED105 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 6.911966204 7.365027226 89074207 endochitinase Carbon cycling Carbon degradation Chitin Photobacterium sp. SKA34 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium; 7.293581749 7.162201259 7.025107691 6.652648511 7.410819469 152143665 Catechol Organic Remediation Aromatics Other aromatics Rhodococcus opacus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.183121266 8.067536112 7.740906804 8.252409115 8.090134435 7.869731059 7.855264278 8.088654668 7.904552636 211960841 alkK Organic Remediation Others Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 6.984886056 7.068632803 229359502 cytochrome Energy process Energy process Pseudomonas fluorescens SBW25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.538862032 7.387308253 7.335109177 7.504819978 7.217955971 7.828166008 7.298915645 7.202396061 7.36560113 115423552 proV Stress Osmotic stress Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 6.686085462 6.751721498 7.043473952 116106195 ppx Phosphorus Phosphorus utilization Lactobacillus casei ATCC 334 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus casei; 7.572418732 7.345389677 7.178667077 7.497680152 7.590469296 7.211557002 6.963446916 7.236151144 134097783 alkK Organic Remediation Others Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 8.131138135 8.135434727 7.599835375 7.485791071 7.866564135 8.182533053 8.085681869 7.967527799 224522390 ara Carbon cycling Carbon degradation Hemicellulose Bacteroides cellulosilyticus DSM 14838 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 7.307481399 7.045083714 7.11024244 118021842 exaA Organic Remediation Chlorinated solvents Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 7.844049516 7.71083678 7.52129687 7.437401496 7.644453792 7.741729992 7.376467493 7.427786386 7.417784153 239812866 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 8.696300159 7.9171145 7.655496314 8.006310409 8.060355148 8.26431071 8.383792284 7.862191408 169793404 narG Nitrogen Denitrification uncultured bacterium 6.926512528 6.86122946 145234927 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.360187077 7.052275596 7.411955719 6.444985529 6.891013612 7.400493176 6.737521249 6.923894807 7.111183459 88858523 pstB Stress Phosphate limitation Pseudoalteromonas tunicata D2 7.428345251 7.025365166 56478193 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 7.370661697 7.416161844 7.128489406 7.453421438 7.336905827 7.389983163 7.298112316 7.213422273 108757788 vanA Carbon cycling Carbon degradation Others Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 7.948225952 7.300943341 7.320042957 7.315047461 124266784 exaA Organic Remediation Chlorinated solvents Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 7.169089805 7.587536637 7.263449102 7.003280277 7.350890401 7.624018021 7.344673995 7.195660958 7.310590474 160221195 amoA Nitrogen Nitrification superkingdom:Bacteria; 7.401691864 6.771395976 7.017116546 7.042278757 7.451715819 255019799 rubisco Carbon cycling Carbon fixation Acidithiobacillus caldus ATCC 51756 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 7.501171599 7.420037013 7.45088055 7.02056781 7.413052299 7.284730985 7.39228413 7.326168342 45124740 P450 Energy process Energy process Streptomyces peucetius ATCC 27952 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces peucetius; 7.226699179 7.44134564 7.729362513 7.243054075 7.206884616 7.549215292 7.122590041 7.399284694 111611319 proO Organic Remediation Aromatics Other aromatics Verminephrobacter eiseniae EF01-2 6.877213613 6.924210404 262410410 ssb Bacteria phage REPLICATION Klebsiella phage KP32 order:Caudovirales;family:Podoviridae;genus:T7-like viruses; 8.172344054 8.200177312 8.122659435 7.586092479 8.126719095 7.343648321 7.765069735 7.784343166 8.30678633 194683678 gyrB other category gyrB Proteus mirabilis HI4320 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 7.2062641 7.215912247 6.832614152 7.027119299 7.006788547 7.11925091 119355169 sigma_32 Stress Sigma factors Chlorobium phaeobacteroides DSM 266 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 7.395588746 7.447780878 7.20934982 219848329 atzA Organic Remediation Herbicides related compound Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 7.664182158 7.25869697 7.290740507 6.86089369 7.361132998 124266776 ArsC Metal Resistance Arsenic Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 8.379884554 8.065827253 7.719459592 8.380465599 8.020931272 8.301207775 8.048871392 8.369378936 237655977 phoA Stress Phosphate limitation Clostridium butyricum E4 str. BoNT E BL5262 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium butyricum; 7.633762019 7.179527498 7.309775212 6.935495677 7.131854616 7.575097599 119774348 cytochrome Energy process Energy process Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 8.093864273 8.095288649 7.703903368 7.35829321 7.930877047 7.665081517 7.76882381 7.958389295 7.558903209 62512291 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.362970139 6.932614099 7.10280816 6.708924039 7.496086941 6.960105519 6.943088032 7.251955152 253998226 obgE Stress Radiation stress Methylovorus sp. SIP3-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylovorus; 7.178409436 7.359934969 7.478846264 7.003760339 7.571990037 7.694359181 7.594806771 7.551103192 7.735065266 72003183 ZntA Metal Resistance Zinc Prochlorococcus marinus str. NATL2A superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 7.11939355 7.18106654 6.914472273 89096476 amyA Carbon cycling Carbon degradation Starch Bacillus sp. NRRL B-14911 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 6.930809254 6.761799419 7.325471583 7.289535964 229477516 pstB Stress Phosphate limitation Planctomyces limnophilus DSM 3776 7.841776749 8.083714493 7.912140491 7.896515017 8.103284477 8.099933225 7.892265023 8.21565353 111055408 nagG Organic Remediation Aromatics Aromatic carboxylic acid Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 7.121030724 7.359847057 7.065942411 7.012266107 7.804227174 6.909456431 6.904616223 223984765 bglH Stress Glucose limitation Holdemania filiformis DSM 12042 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichi;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Holdemania;species:Holdemania filiformis; 7.378106369 7.286968243 7.605467213 7.009675503 7.323547399 7.265716233 119173006 pheA Organic Remediation Aromatics Other aromatics Coccidioides immitis RS superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides immitis; 9.661820176 9.327064457 9.16181484 9.266240287 9.438539768 9.153284641 9.474518908 161391617 SMR_antibiotics Antibiotic resistance transporter Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 7.142714295 7.275997743 7.338779878 151575152 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 7.778850747 7.894215378 7.563784767 7.687797667 8.050278094 8.104780432 7.956125728 7.925519814 7.783881516 254470773 Mex Antibiotic resistance transporter Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 7.439795388 7.301982497 7.61176878 6.961211869 7.144619517 7.620600717 7.521017764 7.21402938 7.396250578 71914333 grpE Stress Heat shock Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 8.061386194 7.702166011 7.382579252 7.642744681 7.753930228 7.975211421 8.030331241 7.79987422 8.029430977 46432509 phoA Stress Phosphate limitation Candida albicans SC5314 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;genus:Candida;species:Candida albicans; 7.117924355 6.503162619 7.082447559 120406768 nhh Organic Remediation Aromatics Nitoaromatics Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 7.460540137 7.64123511 7.882135926 8.054888282 7.293695097 8.071904331 7.794440155 7.609569937 7.968975659 76874462 phoB Stress Phosphate limitation Pseudoalteromonas haloplanktis TAC125 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas haloplanktis; 7.23220271 7.164328767 7.203411602 6.974746793 7.327741595 125621693 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Vibrio cholerae V51 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 7.218151692 7.278822476 7.416208991 7.546493819 7.157793816 7.761659752 7.417287682 7.536086212 7.651340168 126647147 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Algoriphagus sp. PR1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cyclobacteriaceae;genus:Algoriphagus; 7.283528731 7.496837821 7.311923338 146292535 pstA Stress Phosphate limitation Shewanella putrefaciens CN-32 7.752311376 7.340400244 7.694716152 7.045674079 7.508596344 7.57657986 7.480760496 7.54860327 7.44634623 258520627 toxin virulence toxin Cardiobacterium hominis ATCC 15826 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Cardiobacteriales;family:Cardiobacteriaceae;genus:Cardiobacterium;species:Cardiobacterium hominis; 7.859364302 7.555838028 7.350228821 7.256563169 7.639971428 7.588851944 7.670148747 7.635258042 7.459385965 72120112 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.573044339 7.369412204 6.943072597 7.374488963 7.730222775 7.434862451 7.431088291 7.434563369 187717426 fnr Stress Oxygen stress Burkholderia phytofirmans PsJN 7.642589898 7.645438967 7.938012782 7.823249655 8.119160639 8.212757529 8.158291819 8.575883446 163802009 type_III_secretion virulence secretion Vibrio sp. AND4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.36572708 7.339006543 7.119777719 7.271752899 7.689053739 7.54925214 7.33697327 7.30694573 37681123 pilin virulence pilin Vibrio vulnificus YJ016 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 7.185498443 7.377019226 7.804444727 7.390498485 7.124945713 7.542771231 119671142 catechol_B Organic Remediation Aromatics Other aromatics Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 7.964952902 7.87358628 7.340961281 7.512401331 7.769898646 7.74447329 134136168 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 7.754085287 7.376540144 7.68340484 8.262416125 7.902338418 8.074379182 8.223402701 7.658864161 242805753 arcB Stress Oxygen limitation Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 7.452991064 7.410961763 7.609056063 7.22288982 7.487475255 58269430 ahpC Stress Oxygen stress Cryptococcus neoformans var. neoformans JEC21 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Tremellomycetes;order:Tremellales;family:Tremellaceae;genus:Filobasidiella;species:Filobasidiella neoformans; 7.382228928 7.426717766 7.266765467 7.038964456 6.791390919 7.500024312 238023928 proV Stress Osmotic stress Burkholderia glumae BGR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia glumae; 7.505580761 7.644157556 7.77883194 146405649 ureC Nitrogen Ammonification Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.672875306 7.655944829 7.605768712 7.193270442 7.196554042 7.895224484 7.405688977 7.552890131 148501501 vanA Carbon cycling Carbon degradation Others Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 7.658917763 7.707370139 7.702010014 7.655041554 7.798339193 7.664613704 7.586314097 7.80222227 229375153 SMR_antibiotics Antibiotic resistance transporter Helicobacter winghamensis ATCC BAA-430 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter winghamensis; 7.161800085 7.139594658 282947929 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 7.999126377 7.905678822 8.124279752 8.053978817 8.22826325 8.505596048 8.130050931 8.0436969 8.232226242 28629773 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.312757347 7.185838223 7.341567294 6.944474204 7.378533821 6.860073696 7.253557853 76574413 ssb Bacteria phage REPLICATION Synechococcus cyanophage syn9 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.189207387 6.933826593 6.984657374 149188575 SMR_antibiotics Antibiotic resistance transporter Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 7.077758989 7.417187932 7.336189268 7.423340577 7.152517154 7.454950076 7.490987477 7.271894749 15021242 tfdA Organic Remediation Aromatics Chlorinated aromatics Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 7.738966974 7.643918367 7.434694044 7.563217065 7.654586711 7.835510403 7.586059897 7.444402665 7.69454727 53854603 dsrA Sulphur sulfite reductase Desulfovibrio aerotolerans superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 7.42188694 7.501551135 7.08942764 7.345160423 7.458469614 8.005166054 7.058696503 7.525512304 154158647 CopA Metal Resistance Copper Xanthobacter autotrophicus Py2 7.473917098 7.94760682 7.171452563 7.163201518 7.520875836 7.175894184 7.509005796 149752314 pstB Stress Phosphate limitation Dorea longicatena DSM 13814 6.961230582 6.977853992 7.066593867 15077493 dsrB Sulphur sulfite reductase Thermodesulfobacterium thermophilum superkingdom:Bacteria;phylum:Thermodesulfobacteria;class:Thermodesulfobacteria;order:Thermodesulfobacteriales;family:Thermodesulfobacteriaceae;genus:Thermodesulfobacterium; 6.878545342 6.946688161 210148643 sigma_38 Stress Sigma factors Vibrio alginolyticus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.484185408 7.238481166 7.275978349 7.391267324 7.360852356 7.417400438 13423667 pcc Carbon cycling Carbon fixation Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 7.217038083 7.489032908 7.644245992 7.707793322 7.266964753 7.918216218 7.643869776 7.377084021 7.987164564 119766681 sigma_38 Stress Sigma factors Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 8.071056673 7.336720148 7.821364038 7.860154304 7.558567058 7.254582538 7.550541693 251857416 cda Carbon cycling Carbon degradation Starch Prevotella melaninogenica ATCC 25845 7.092124495 7.169734946 6.60975785 7.506112858 7.147196598 6.778497015 7.295727156 91686250 phtA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.761580535 7.838903134 7.854116369 7.05614549 7.378301276 7.630282555 7.377197886 7.469845395 7.425621811 113897311 ureC Nitrogen Ammonification Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 7.427676882 7.304930717 7.258155202 7.261356621 7.208493244 256832774 hrcA Stress Heat shock Jonesia denitrificans DSM 20603 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 8.195019353 8.14974511 8.076027636 8.016931709 7.925902391 7.883178003 7.569113462 7.754977674 118728610 rubisco Carbon cycling Carbon fixation Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.790790384 7.793554683 7.493375248 7.60935661 8.032267391 7.815843254 8.011923522 7.954279216 63254770 TerD Metal Resistance Tellurium Pseudomonas syringae pv. syringae B728a 6.92716025 7.141013272 7.291744998 6.918895516 7.233613639 124515574 formate_hydrogenlyase_complex Bioleaching Carbon fixation Leptospirillum sp. Group II UBA 7.474941248 7.294067549 7.197537581 7.658585405 7.587579295 258510115 rubisco Carbon cycling Carbon fixation Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 7.599295339 7.742098602 7.510769587 7.375856513 7.971261757 7.338106188 7.317480456 170695463 pstC Stress Phosphate limitation Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 7.850222243 7.890880949 7.699785059 7.718813688 7.352106915 7.241620716 7.118119326 281402148 hly virulence hemolysin Prevotella oris F0302 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella oris; 7.936992654 7.77699886 7.688555112 7.706510274 7.850802899 7.865713958 7.819158002 7.579829592 158251690 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 6.91847759 7.000176863 6.797353164 6.968738482 121603239 oxyR Stress Oxygen stress Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 7.502533708 7.811271684 7.848903315 7.481772563 7.65436049 7.414957877 7.728739828 221735169 ppx Phosphorus Phosphorus utilization Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 8.759057436 8.698915135 8.651637564 119670055 fnr Stress Oxygen stress Azoarcus sp. BH72 7.687519851 7.6722197 7.430932518 7.533636584 7.199906865 7.411804843 158138873 narG Nitrogen Denitrification uncultured bacterium 7.558423954 7.607977421 7.563094073 7.600320947 7.694154852 7.913892912 7.947355151 7.853329593 7.942379335 87123936 nifH Nitrogen Nitrogen fixation Synechococcus sp. RS9917 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.497531699 7.096108934 7.384835488 7.118834903 7.155264738 7.534161888 7.205329856 7.251402897 7.275666456 10639561 RNA_polymerase_sigma_32_Factor_III Bioleaching other category Thermoplasma acidophilum 7.079553348 7.011046922 7.317596661 125497572 obgE Stress Radiation stress Streptococcus sanguinis SK36 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus sanguinis; 6.812798341 7.28084645 7.511147522 6.741780134 7.673899986 7.063102467 7.3890278 126172360 AceB Carbon cycling Carbon degradation others Shewanella baltica OS155 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 8.074334762 7.988672445 8.019308055 8.251728669 8.774746011 8.161290744 8.654375725 8.487491723 8.631568852 73662760 glnA Stress Nitrogen limitation Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 7.494135506 7.632467098 7.274821586 6.858505189 7.61505212 7.48322278 7.613740125 7.234035501 7.430326234 151939817 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.910549895 7.593934055 7.872303632 8.100020849 7.767582729 7.968525181 7.563131561 7.326560975 7.566941771 56909294 katE Stress Oxygen stress Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 7.165001527 7.479422453 7.188816873 7.224710738 82618397 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.327036713 7.221342741 7.001686625 6.703906475 7.779058552 228270515 cap virulence capsule Staphylococcus hominis SK119 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus hominis; 7.175646436 6.867201932 7.012077125 7.371312106 259907095 B_lactamase_C Antibiotic resistance Beta-lactamases Erwinia pyrifoliae Ep1/96 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia pyrifoliae; 7.419603079 7.28537793 7.393878182 7.332461406 7.172370848 7.482711996 7.342886745 7.344478327 162283897 ArsC Metal Resistance Arsenic Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 7.434139522 7.434018203 7.364738705 7.062508736 7.701829941 147677168 obgE Stress Radiation stress Pelotomaculum thermopropionicum SI superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Pelotomaculum;species:Pelotomaculum thermopropionicum; 7.331233664 7.46815598 7.687517819 7.405855476 7.584243042 7.860324733 7.446031829 7.72551049 7.47513715 226182728 pcc Carbon cycling Carbon fixation Rhodococcus erythropolis PR4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 7.907918621 7.990426404 7.944927322 7.563517089 7.594360074 7.7431932 7.474452912 7.613280315 7.836133602 19548131 nirS Nitrogen Denitrification Azoarcus toluvorans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 7.750796895 7.797431513 7.602623079 7.337492233 7.59441288 7.350307695 7.233336742 7.422713608 56963939 AceB Carbon cycling Carbon degradation others Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 7.501006733 7.241988189 7.620581477 7.904509453 6.872293672 7.1187382 7.166506762 58001700 grpE Stress Heat shock Gluconobacter oxydans 621H superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter oxydans; 7.46090975 7.741521487 7.642522181 7.778966598 7.597510138 7.680454108 7.58477729 7.651403604 7.346013565 119505151 cap virulence capsule marine gamma proteobacterium HTCC2080 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.207251814 7.355972116 7.313244698 7.299818927 6.981597091 7.396618184 7.110668843 7.131231933 10567795 pilin virulence pilin Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.598030806 7.665096889 8.15770804 7.754999281 8.254649727 7.734602148 7.636563404 7.754421073 213647136 amyA Carbon cycling Carbon degradation Starch Salmonella enterica subsp. enterica serovar Typhi str. J185 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 7.548914995 7.300628674 7.328610913 7.026519872 7.168552222 7.429085584 7.267370241 7.188233194 78517015 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.455470721 7.567789227 7.757757328 6.983920244 7.666701341 8.036014542 7.407960562 7.536187115 7.593930665 186471609 proV Stress Osmotic stress Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.811568675 7.714269159 7.632409247 7.262996694 7.908223832 7.802017452 7.830425327 7.501027512 7.85878009 260769239 iuc virulence aerobactin Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 8.209495003 7.473595362 7.281953181 7.496073155 107856919 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 7.084170961 6.945487642 7.074485911 6.997512037 6.892307805 6.763458681 283476634 oxyR Stress Oxygen stress Erwinia pyrifoliae DSM 12163 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia pyrifoliae; 7.624940839 7.699102206 7.527102307 7.730491681 7.359744915 7.782078758 7.466995725 7.786554268 7.474954297 118568978 adpB Organic Remediation Pesticides related compound Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 7.679775548 7.769806801 7.541971395 7.245447167 7.616780789 7.699140717 7.290780842 7.492011458 110167910 mer Metal Resistance Mercury Trichodesmium erythraeum IMS101 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Trichodesmium;species:Trichodesmium erythraeum; 7.350692132 7.445052593 7.331753383 7.314825784 7.587674474 7.605217319 7.660475746 8.053681912 211960985 type_III_secretion virulence secretion Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 7.422777186 6.990084938 218751092 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.039170732 7.131620838 7.692452267 7.449362925 7.2300524 7.682959106 7.49703197 7.600455966 118043038 CadA Metal Resistance Cadmium Burkholderia phytofirmans PsJN 7.604308715 7.689915409 7.224406521 6.976528766 7.723456478 7.620355128 7.446675731 49176889 pcpE Organic Remediation Herbicides related compound Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.259185525 7.265923478 7.126642137 7.139940425 6.948479171 7.576117419 6.83714464 7.130760216 6066884 dmsA Organic Remediation Others Yersinia enterocolitica superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia; 6.952129099 6.616912025 19917644 MFS_antibiotic Antibiotic resistance transporter Methanosarcina acetivorans C2A superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina acetivorans; 7.378917337 7.431784921 7.384517893 7.247551725 7.201708602 7.656210747 156936101 pstA Stress Phosphate limitation Enterobacter sakazakii ATCC BAA-894 7.502191842 7.497191049 7.83851159 7.691978144 7.41380406 7.891908906 7.48342046 7.585517149 18034189 APS_AprA Sulphur adenylylsulfate reductase Desulfobacula toluolica superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacula;species:Desulfobacula toluolica; 7.081005602 7.037179062 50542730 rubisco Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.702781145 7.755831664 7.25096458 7.084634902 7.498359777 7.842808078 7.62339151 7.114949805 124515571 formate_hydrogenlyase_complex Bioleaching Carbon fixation Leptospirillum sp. Group II UBA 7.786519371 7.799002835 7.429871898 7.034368103 6.949532088 7.933811075 7.351783781 7.341180154 120594344 phdJ Organic Remediation Aromatics Polycyclic aromatics Polaromonas naphthalenivorans CJ2 7.477727604 7.457099044 7.464646388 7.375049099 7.422463336 7.460867682 7.475852487 7.813417244 163761522 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 7.870250454 7.783268832 7.548992819 7.313580762 7.472447058 7.828880867 7.575880784 7.208913224 7.334516265 12667572 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium UMTRAdsr615-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 7.466227221 8.187764182 7.7301148 7.905529417 7.94493953 7.828809231 8.058218548 260434525 pstB Stress Phosphate limitation Synechococcus sp. WH 8109 8.255233449 8.201905573 8.144692625 8.048995094 8.418149607 8.408301893 7.826686096 8.500225171 214034397 pstB Stress Phosphate limitation Carboxydibrachium pacificum DSM 12653 7.021641289 7.061483094 6.771156783 7.247478281 224801692 sigma_70 Stress Sigma factors Opitutaceae bacterium TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 7.424449984 7.682187241 7.456309012 6.942861733 7.578983025 7.318978717 7.337854532 37548682 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.265810806 7.326944915 7.355043348 7.207718457 7.024875207 7.841884129 7.219195194 7.447851249 7.657736406 158421696 nitA Organic Remediation Aromatics Other aromatics Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 7.325922677 7.292901283 7.306695052 7.180427358 7.497111951 7.692204936 7.609165839 7.522538442 7.591646229 88799816 FTHFS Carbon cycling Acetogenesis Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 7.480701572 7.419515781 7.309300616 7.00532198 6.531812482 229322263 oxyR Stress Oxygen stress Rhodococcus erythropolis SK121 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 8.01705711 7.968084495 7.700405243 8.10754426 7.879327104 8.003216558 7.431813249 7.745286672 193160978 amoA Nitrogen Nitrification superkingdom:Bacteria; 7.310103375 7.178854627 7.041420712 7.020819517 7.676208606 7.239126135 7.471233392 6.967087505 86555282 trzE Organic Remediation Herbicides related compound Synechococcus sp. JA-3-3Ab superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.87313354 7.925038855 8.005197343 8.101300135 7.178722429 8.373432394 7.73838388 7.642541947 8.059860956 86749252 nagG Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.562599963 7.823979129 7.498927468 7.629721256 7.626298953 7.89067718 88801009 grpE Stress Heat shock Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 7.484957272 7.413511859 7.235641112 7.216623691 7.344618688 7.169737179 7.413200901 7.24267361 2264400 phenol_oxidase Carbon cycling Carbon degradation Lignin basidiomycete CECT 20197 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 7.321399442 7.182271505 154157959 grpE Stress Heat shock Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 7.6108157 7.705862386 7.490438561 7.121332569 7.240813698 7.916667872 7.396983558 7.255151822 7.163215381 39995384 cytochrome Energy process Energy process Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 7.550215083 7.594964163 7.230217238 7.218961707 7.046084541 7.429417222 7.185880175 7.047294515 7.226151639 27542972 B_lactamase_C Antibiotic resistance Beta-lactamases Enterobacter aerogenes superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 7.934394967 7.523130826 7.402504247 7.377440234 7.635605265 7.811847391 7.624392857 7.41352973 7.673534318 211905527 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 7.989652304 7.732568477 7.59694855 7.45096942 7.501162774 7.9230722 7.619516406 7.463023247 227241460 xylA Carbon cycling Carbon degradation Hemicellulose Sphingobacterium spiritivorum ATCC 33300 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium;species:Sphingobacterium spiritivorum; 7.121785142 6.941258512 258635095 MFS_antibiotic Antibiotic resistance transporter Pantoea sp. At-9b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 7.196742595 7.151457501 6.9597574 7.019536147 7.10290969 169149574 mdlD Organic Remediation Aromatics Other aromatics Acinetobacter baumannii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 7.213547935 7.109416154 7.046681606 7.337826991 84500884 sigma_32 Stress Sigma factors Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 7.238246096 7.6974986 7.879695968 7.387641158 7.258353806 269829923 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Vibrio alginolyticus 40B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 7.35138236 7.247330083 146401902 glycosyl_transferase_EPS Bioleaching EPS Acidiphilium cryptum JF-5 7.601651446 7.630710796 8.030785072 8.240811469 7.924178308 7.990487157 7.677321408 7.614208507 7.779841318 146195410 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.917850385 7.713372011 7.509254661 7.20971017 7.812578331 7.717455494 7.655847284 7.645931215 116633914 narG Nitrogen Denitrification uncultured bacterium 7.36470298 7.274409775 7.205152994 6.788347283 7.339214416 7.603985782 7.360447186 7.199299709 76801137 atzA Organic Remediation Herbicides related compound Natronomonas pharaonis DSM 2160 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natronomonas;species:Natronomonas pharaonis; 7.358376333 7.380442094 7.267581264 7.213063093 7.228648539 7.538541 7.601503183 7.189812126 7.29817277 70779190 nagG Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas pseudoalcaligenes superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.483333811 7.582801516 7.256187381 7.100253891 7.405570524 169807141 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 7.56680995 7.608593345 7.323518524 7.15045246 7.284808784 7.667356864 7.48694177 7.113066819 190685171 mannanase Carbon cycling Carbon degradation Hemicellulose Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 7.103207902 7.202860191 7.095030257 7.506114725 170114117 ChrA Metal Resistance Chromium Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 7.551253096 7.349021445 7.348564249 7.318599455 7.791144383 7.578745048 7.83901632 7.284151516 7.760881563 146399545 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 7.561589405 7.819785198 7.83535808 8.061630329 7.85397447 8.005576914 7.802955206 7.755216405 7.899796667 116252261 gyrB other category gyrB Rhizobium leguminosarum bv. viciae 3841 7.721420714 7.511874853 7.568801119 6.823437852 7.562333071 258651799 hrcA Stress Heat shock Nakamurella multipartita DSM 44233 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 8.35711804 8.33035769 8.381652569 7.879077863 8.399474225 8.075659816 8.29490058 8.502580412 7.775165272 238809974 pstB Stress Phosphate limitation Mycoplasma fermentans PG18 7.293389715 7.187971415 7.499477291 6.81793478 7.021345413 7.479354331 7.113456437 7.292879958 7.160912762 258406507 glnA Stress Nitrogen limitation Desulfohalobium retbaense DSM 5692 7.148305901 7.230107767 7.225971965 6.926635144 7.300484111 7.150618896 7.296249356 37731823 ureC Nitrogen Ammonification Nitrosomonas cryotolerans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 8.11266544 8.003101575 7.891054145 7.389645487 7.638103659 7.75092921 8.09095772 8.044923773 34557896 ZntA Metal Resistance Zinc Wolinella succinogenes DSM 1740 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Wolinella;species:Wolinella succinogenes; 7.754088154 8.087065114 7.361815371 7.036752226 7.726661425 7.607291157 7.460264497 7.360523444 212635376 cytochrome Energy process Energy process Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 7.734902237 7.674184447 7.640181258 7.26973497 8.064578467 7.993693427 7.678695947 7.799383529 114776734 obgE Stress Radiation stress Mariprofundus ferrooxydans PV-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Zetaproteobacteria;order:Mariprofundales;family:Mariprofundaceae;genus:Mariprofundus;species:Mariprofundus ferrooxydans; 7.309791849 7.072727742 21647479 hrcA Stress Heat shock Chlorobium tepidum TLS superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 7.19172686 6.91271576 7.401935133 7.01319587 7.562282103 6.899463185 7.276593484 167076387 AceB Carbon cycling Carbon degradation others Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.299131268 8.362127718 8.461301346 7.775419522 8.396394532 7.857587358 8.46568612 8.569476684 8.650451393 41688150 amoA Nitrogen Nitrification superkingdom:Bacteria; 7.043470289 7.010752277 6.831369872 115400996 tftH Organic Remediation Aromatics Chlorinated aromatics Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.777727635 7.705824617 7.693341849 8.077578818 7.958688637 8.104555535 8.030588001 7.68525067 94312401 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.224551541 8.066564589 7.690462465 8.211468707 7.936467548 8.055840335 8.193145812 7.628997688 7.949647584 89949849 glucoamylase Carbon cycling Carbon degradation Starch Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 7.208783317 7.055734548 7.13429045 6.964979998 7.144103692 118591860 SMR_antibiotics Antibiotic resistance transporter Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 8.132154079 7.961635288 7.996976015 8.006599366 8.482729555 8.198907825 8.393375561 8.176471045 7.913785727 113733426 ara Carbon cycling Carbon degradation Hemicellulose Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.192118248 7.820440304 7.698536357 7.88984045 7.82376163 7.867007517 7.970558068 7.910799183 7.860886534 82618375 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.782267131 9.012790209 8.360147275 8.645750425 8.291335199 8.264231966 8.268032042 8.456710599 8.298081811 62906762 dsrB Sulphur sulfite reductase uncultured prokaryote 7.118353706 7.701378964 161389958 ArsC Metal Resistance Arsenic Phaeobacter gallaeciensis BS107 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 7.978490131 8.571189967 8.001187503 8.552880271 8.834671871 8.387322584 8.58900226 8.455889939 8.382964786 149741824 AceA Carbon cycling Carbon degradation others Vibrio cholerae MZO-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 7.172592467 7.162996491 114315159 gyrB other category gyrB Granulibacter bethesdensis CGDNIH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 7.771941712 7.580032541 7.790892051 7.726310148 7.609680233 7.358570111 7.7412597 7.514811768 193223383 Arylest Organic Remediation Aromatics Other aromatics Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 8.176295442 8.199354134 8.391304132 8.037573382 8.391299722 7.993538445 8.387115228 8.444111584 8.584671643 149247102 AceB Carbon cycling Carbon degradation others Lodderomyces elongisporus NRRL YB-4239 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Lodderomyces;species:Lodderomyces elongisporus; 7.288673824 7.402220028 7.038094959 50122086 ppk Phosphorus Phosphorus utilization Erwinia carotovora subsp. atroseptica SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 7.569520217 7.604652277 7.188544176 7.04126659 7.45769716 77377958 B_lactamase_C Antibiotic resistance Beta-lactamases Yersinia ruckeri superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia; 7.475188865 7.474069941 7.265302276 6.9858849 7.441743071 7.462086757 7.481359861 7.689600136 160892819 ppk Phosphorus Phosphorus utilization Clostridium sp. L2-50 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 7.016732252 6.646489508 6.626523636 7.281929333 247546441 pstC Stress Phosphate limitation Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.604162019 7.39323071 7.203116477 7.161415907 7.4206486 7.551220267 212541006 nagG Organic Remediation Aromatics Aromatic carboxylic acid Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.676961811 7.76969457 7.438525865 7.404290192 7.440206987 7.545424591 7.076843768 39995147 cap virulence capsule Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 7.497760268 7.659937112 7.676650604 7.724651775 7.559055125 7.784296047 7.981193802 157804772 AprA Sulphur adenylylsulfate reductase Thiodictyon sp. f4 7.406861566 7.25297889 7.566853508 7.566778869 7.147375599 7.496068628 7.135647533 7.301168821 121495602 narG Nitrogen Denitrification uncultured bacterium 7.771893403 7.634403478 7.489455527 7.326561911 7.78988955 7.952172442 83956091 CadA Metal Resistance Cadmium Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 7.79402358 8.430919007 8.102169207 8.152080022 8.403548294 8.127865108 8.514689893 8.332327248 269926188 sigma_70 Stress Sigma factors Thermobaculum terrenum ATCC BAA-798 superkingdom:Bacteria;genus:Thermobaculum;species:Thermobaculum terrenum; 7.186636374 7.247870506 7.177930044 6.673215072 6.86963186 7.726064504 7.470985649 7.17100628 7.212165974 151561407 phn Organic Remediation Herbicides related compound Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 7.305432926 7.29177955 7.813928655 7.507406353 7.406211764 7.578787658 7.795622515 7.504023036 7.857304674 242822151 katE Stress Oxygen stress Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 7.095604499 7.152173558 239822238 proV Stress Osmotic stress Ochrobactrum intermedium LMG 3301 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 7.19338521 7.599808274 7.173788032 7.246380927 7.135460851 7.379288759 6.882542532 7.076175037 90418681 oxyR Stress Oxygen stress Aurantimonas manganoxydans SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 8.121431567 7.95012978 7.886313505 7.96476449 8.253394237 7.946022965 7.850782784 8.045478207 8.178580038 223895326 sigma_24 Stress Sigma factors bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 7.41891686 7.138244918 7.192311763 7.080143587 7.548938563 85697641 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Nitrobacter sp. Nb-311A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter; 8.221207095 8.340068617 8.391165652 7.859495582 8.578994038 7.730243169 8.033267316 8.215069091 7.921178753 152992282 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Sulfurovum sp. NBC37-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;genus:Sulfurovum; 7.169896545 7.274576842 6.894295038 7.366983553 7.497831379 7.540539985 7.549680814 126726411 obgE Stress Radiation stress Rhodobacterales bacterium HTCC2150 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.688894868 7.638066626 7.27205884 7.670454537 7.990397886 7.592061098 227832035 fnr Stress Oxygen stress Corynebacterium aurimucosum ATCC 700975 6.721753641 7.570248625 7.373144575 7.028283127 76058199 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.049136115 7.59608537 7.424171315 7.114198846 73540698 ureC Nitrogen Ammonification Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.401804724 7.411927286 6.943633884 7.657828454 218240759 atzA Organic Remediation Herbicides related compound Alicyclobacillus acidocaldarius LAA1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 7.857021457 7.865838972 7.775527349 7.833360589 6.9676062 8.138266755 7.288426527 7.068958042 7.771695791 25166424 sigma_70 Stress Sigma factors Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis 6.821277774 6.653389709 219666778 rd Organic Remediation Chlorinated solvents Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 7.678977266 7.843657492 7.550712596 7.390615483 7.617578536 7.686563504 7.754028955 7.795102749 7.495615223 85702932 obgE Stress Radiation stress Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.578356048 7.516843195 7.915350952 7.874413922 7.52441948 8.176359597 7.745891813 7.779871354 7.796957092 118032831 tftH Organic Remediation Aromatics Chlorinated aromatics Burkholderia phymatum STM815 7.664928901 7.756872795 7.438565308 8.204515938 8.027403381 7.746876355 8.108522611 149277721 CopA Metal Resistance Copper Pedobacter sp. BAL39 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter; 7.929435478 7.75325426 7.478317833 7.488518029 7.931254002 7.875122498 7.782305481 8.049962027 8.154070197 225421393 RNA_dependent__RNA_polymerase Bacteria phage REPLICATION Enterobacterio phage MS2 family:Leviviridae;genus:Levivirus;species:Enterobacteria phage MS2; 7.721496371 7.520802981 7.287713426 7.591989995 8.042803646 7.537001521 7.519453115 7.504020068 4981900 vanA Carbon cycling Carbon degradation Others Thermotoga maritima MSB8 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga;species:Thermotoga maritima; 7.585827912 7.478836322 7.31314003 7.318248203 7.439803012 45047286 ArsA Metal Resistance Arsenic Methanococcus maripaludis S2 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanococcaceae;genus:Methanococcus;species:Methanococcus maripaludis; 7.084462266 7.346885629 6.992360712 7.244151683 6.873845586 28971625 akbF Organic Remediation Aromatics BTEX and related aromatics Pseudomonas fluorescens 7.345157769 7.276318651 7.361536975 7.103530816 6.960708841 7.354427188 69290762 ureC Nitrogen Ammonification Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 7.923332941 7.693408263 7.573811656 7.515961703 8.193654667 7.947429815 7.834800766 7.937979771 7.956242955 238926131 nrfA Nitrogen Dissimilatory N reduction Selenomonas flueggei ATCC 43531 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas flueggei; 7.839989627 7.890789303 7.758262689 7.78355867 7.985588369 7.918975131 8.229812315 8.298721975 7.825827983 261857027 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.014066721 8.084960612 7.759116278 7.481638281 8.163390203 8.082078104 7.88513517 8.052372825 170094546 glx Carbon cycling Carbon degradation Lignin Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 7.571901911 7.213487498 7.419400834 7.196344394 7.127978793 7.397819151 283809561 obgE Stress Radiation stress Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 7.353100608 7.551820985 7.590172258 7.772831753 8.08748827 8.270203274 8.022781676 8.006375443 91710228 aclB Carbon cycling Carbon fixation Methylobacillus flagellatus KT superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 7.795154366 7.643973949 7.672201059 7.786023198 8.218280705 8.49630011 8.044074913 7.800539684 8.008446803 146406462 gdh Nitrogen Ammonification Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.030862311 8.008507504 7.982561983 8.003485663 8.38005666 8.13077003 8.345537909 8.048295398 8.088388209 37197648 phoB Stress Phosphate limitation Vibrio vulnificus YJ016 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 7.152778888 7.485562722 7.479528148 7.435075067 6.875073465 7.770566474 7.149276268 7.145307293 7.251468277 229379063 sigma_24 Stress Sigma factors Oxalobacter formigenes OXCC13 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Oxalobacter;species:Oxalobacter formigenes; 7.990585747 7.683822243 7.382412552 7.343631491 7.956005393 7.581403395 7.560734487 7.59084803 7.886373841 110679591 4HBH Organic Remediation Aromatics BTEX and related aromatics Roseobacter denitrificans OCh 114 7.510914868 7.330540189 7.115352672 7.219074166 7.093417337 7.694144173 7.123877084 7.098839449 256617288 endochitinase Carbon cycling Carbon degradation Chitin Enterococcus faecalis ATCC 4200 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus faecalis; 7.187649229 6.78527678 7.44443407 7.017307335 7.167047885 7.271080404 7.435009971 7.679632737 109290330 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.202829994 7.328632669 7.281493871 7.766781434 7.178242402 7.94999719 7.128941903 7.314884557 7.552220964 209534920 nagG Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.402374513 7.698660528 7.442472058 7.10451271 7.771279748 7.12120511 7.390603543 247543146 endochitinase Carbon cycling Carbon degradation Chitin Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.806138052 7.27371853 7.33190486 7.220059274 7.514260853 7.562671676 7.254774416 7.577437061 52350378 cellobiase Carbon cycling Carbon degradation Cellulose Bacillus licheniformis DSM 13 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 7.733745768 7.835941945 7.807794018 8.088141832 7.646691322 7.811735243 7.702865018 7.679827617 7.688912738 118619918 bphA Organic Remediation Aromatics Polycyclic aromatics Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 7.444753019 7.153994311 7.359973239 7.423827065 7.53636625 62512308 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.691426502 7.681669793 7.420776147 6.968835949 7.187775556 7.59854366 7.472341467 7.36039058 7.39236531 113881424 sigma_70 Stress Sigma factors Synechococcus sp. CC9311 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.485396224 7.925762641 7.945574058 7.838301424 8.311130413 7.981277481 8.185020764 8.082672716 218272738 cda Carbon cycling Carbon degradation Starch Roseburia intestinalis L1-82 7.193356137 7.107943563 7.099464134 7.181774056 6.777821503 7.732578306 6.975376681 7.107915792 7.485475203 217497841 pcc Carbon cycling Carbon fixation Shewanella baltica OS223 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 7.716580218 7.401857948 7.069485522 7.488065525 7.274595213 7.477055884 254444317 nrfA Nitrogen Dissimilatory N reduction Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 8.016571001 7.798272148 7.799792753 7.350336817 7.349682751 7.70786475 7.505410333 7.263504685 7.825145111 111017262 BADH Organic Remediation Aromatics Other aromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7.868534886 7.618227943 7.299610725 7.411077173 7.125685676 7.954273729 7.207652755 7.457473414 218321395 pilin virulence pilin Vibrio splendidus LGP32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 7.301308729 7.256452792 6.917570901 6.953494678 7.176629421 256738548 nrfA Nitrogen Dissimilatory N reduction Parabacteroides sp. D13 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides; 7.173685993 6.964453707 211592881 ara_fungi Carbon cycling Carbon degradation Hemicellulose Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 7.082029059 7.008184666 7.02229677 7.333986242 106890983 ZntA Metal Resistance Zinc Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 7.5031944 7.544034166 7.651734451 6.951422075 7.551327559 7.873172165 7.868393504 7.508865605 7.671186943 149278736 sigma_70 Stress Sigma factors Pedobacter sp. BAL39 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter; 7.842856456 7.630554732 7.483620484 7.405888407 7.793213366 7.832700569 7.773792393 7.367631248 7.4792684 225210363 sigma_70 Stress Sigma factors Roseburia inulinivorans DSM 16841 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia inulinivorans; 7.927304693 7.423271915 7.255791939 7.533319931 74053782 cumA Organic Remediation Aromatics Other aromatics uncultured bacterium 7.745854149 7.975025103 7.957462412 8.286518573 7.86133277 7.975202771 8.223501209 8.272673694 157913230 phdCI Organic Remediation Aromatics Polycyclic aromatics Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 7.611855933 7.643069743 7.835978364 7.841732028 7.597327975 8.012095519 7.581666737 7.911924842 7.859143479 18034329 dsrB Sulphur sulfite reductase Desulforhopalus singaporensis superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulforhopalus; 7.794329974 7.865822713 7.90638244 7.140334145 7.727177097 7.701943872 7.685428819 7.604377674 7.896369697 77993227 SMR_antibiotics Antibiotic resistance transporter IncP-1beta multiresistance plasmid pB8 8.102567452 8.100217286 7.903664425 8.179959227 8.414218771 8.270943626 8.225256803 7.691841761 7.980811291 114047800 narI Stress Oxygen limitation Shewanella sp. MR-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 7.030754489 7.086824776 211958957 CopA Metal Resistance Copper Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 7.283785692 7.126358894 7.302436856 7.530666336 7.479084045 7.221883557 7.506257689 7.49776986 168826349 oxyR Stress Oxygen stress Haemophilus somnus 2336 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Histophilus;species:Histophilus somni; 7.153084858 6.971079544 6.823946877 7.507436163 6.998856484 7.394624139 83017275 gyrB other category gyrB Microbulbifer sp. MBIC06115 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Microbulbifer; 7.577939075 7.732425827 7.603292624 7.077092888 7.351216702 7.5499389 7.696534275 133909869 ureC Nitrogen Ammonification Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 7.634265457 7.673164925 7.536190847 7.772388718 7.744344166 7.847803319 7.753221033 7.781918292 7.573338972 110622606 alkK Organic Remediation Others uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 7.196156713 7.327792638 7.202625469 6.911979861 7.726765132 7.039237205 6.884947273 187718291 dehH Organic Remediation Chlorinated solvents Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.896551936 7.993244328 7.926643869 7.47569394 8.11566852 7.870556698 7.551716971 7.843886202 170694025 iro virulence Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 8.293612711 8.304917271 8.197687705 8.049078749 8.605947102 8.169146566 8.137898711 8.248524741 7.855855741 33597397 sigma_70 Stress Sigma factors Bordetella parapertussis 12822 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella parapertussis; 7.716879319 7.486478421 7.190326882 7.405718277 6.785254116 7.974510889 7.239057675 7.246974328 7.199864897 57020087 vip virulence virulence protein Campylobacter coli RM2228 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter coli; 7.486791161 7.103486748 123443815 CusA Metal Resistance Copper Yersinia enterocolitica subsp. enterocolitica 8081 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 7.467176114 7.478493121 7.33301636 7.464923715 7.630106172 7.666329786 118435066 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 7.872198286 7.138107399 7.486724436 6.943341138 7.540767595 7.773009788 7.362872395 7.155320613 7.414265803 117998475 gyrB other category gyrB Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.194323524 7.345684255 6.787614304 7.451153935 120595617 narH Stress Oxygen limitation Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 7.50083458 7.630072373 6.815095402 7.209907052 7.362880661 118594226 ahpC Stress Oxygen stress Methylophilales bacterium HTCC2181 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales; 6.86448279 7.456351334 117561366 obgE Stress Radiation stress Aeromonas hydrophila subsp. hydrophila ATCC 7966 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas hydrophila; 7.289667745 7.527196302 7.602649831 7.714405603 7.668927383 7.93647784 7.623967977 7.855932464 7.710518316 151302194 AprA Sulphur adenylylsulfate reductase Desulfonauticus submarinus 7.15740971 6.957131404 261213084 pstB Stress Phosphate limitation Vibrio sp. RC341 7.396602584 7.53956163 7.382717907 7.474598141 7.656923751 7.618728448 7.384887175 7.213664807 7.48387152 182414385 sigma_24 Stress Sigma factors Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 7.169155992 7.109444033 7.408403724 119488624 phytase Phosphorus Phosphorus utilization Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 7.740448343 7.765869707 7.749812574 7.430882422 7.925386352 7.999076085 7.867458443 7.396872475 7.997866029 32453727 ssb Bacteria phage REPLICATION Enterobacteria phage RB69 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.162670364 7.127197283 6.925860122 6.700646551 7.483164668 6.789136579 6.801791389 11095214 alkK Organic Remediation Others Streptomyces rishiriensis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7.605475987 7.831476925 7.629532117 7.217372717 7.803507839 7.912350042 7.696106836 7.70604472 7.78866056 108877603 pbrA Metal Resistance Lead Aedes aegypti superkingdom:Eukaryota;kingdom:Metazoa;phylum:Arthropoda;class:Insecta;order:Diptera;family:Culicidae;genus:Aedes; 6.920504338 7.218792247 86609427 mer Metal Resistance Mercury Synechococcus sp. JA-2-3B'a(2-13) superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.603579503 7.589541635 7.625055786 6.810189108 7.533587467 7.710242912 7.619791173 7.745596702 103487884 ArsC Metal Resistance Arsenic Sphingopyxis alaskensis RB2256 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 8.287805787 8.123838482 7.786893081 7.569596826 8.211618045 7.959786828 8.094333352 7.645632252 7.980808127 117979798 gyrB other category gyrB Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.271935675 7.455799991 7.260353336 7.71040102 7.816482099 7.523001624 7.504917896 36787113 Arylest Organic Remediation Aromatics Other aromatics Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 7.16513657 7.095544844 6.518155719 7.379896129 171913703 gyrB other category gyrB Verrucomicrobium spinosum DSM 4136 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Verrucomicrobium;species:Verrucomicrobium spinosum; 7.394321457 7.425420743 7.5015009 7.2546052 7.643885893 7.799098313 7.751664686 7.684141919 7.5606584 126460037 APS_AprB Sulphur adenylylsulfate reductase Pyrobaculum calidifontis JCM 11548 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum calidifontis; 7.531912377 7.416867425 7.43771296 7.212540574 7.148777735 7.847317657 7.433997014 7.427528378 7.503441727 83645262 exoglucanase Carbon cycling Carbon degradation Cellulose Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 7.442225103 7.638208443 7.454392126 7.419625574 7.279536101 7.595367334 16081719 ferredoxin_oxidoreductase Bioleaching Electron transport Thermoplasma acidophilum;Thermoplasma acidophilum DSM 1728 7.222960748 7.621676814 7.41474585 7.062787606 7.52714181 7.459310926 7.492730855 7.506637527 112143373 gyrB other category gyrB Pseudomonas pseudoalcaligenes superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.528274506 7.322555226 7.664739002 7.413133779 7.32541417 90440862 sigma_38 Stress Sigma factors Vibrio angustum S14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium angustum; 7.568894618 7.33222061 7.250037528 62149264 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.326947349 7.446260011 7.170298918 6.930297246 7.601509418 7.571560915 7.292189374 7.063440793 7.367362914 5578703 bphA Organic Remediation Aromatics Polycyclic aromatics Sphingomonas xenophaga 7.949962631 7.643623061 7.603301942 7.175022614 7.45950493 78185664 hrcA Stress Heat shock Synechococcus sp. CC9902 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.436262168 7.052714865 7.123286269 6.728915615 7.660771217 209531819 silC Metal Resistance Silver Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 8.095199473 7.880247001 7.840966707 7.94031714 7.585235188 8.210895516 7.624037858 7.679071598 108803439 ZntA Metal Resistance Zinc Rubrobacter xylanophilus DSM 9941 8.002172897 7.956178828 7.76868951 7.213169594 8.038365248 7.59587728 7.904871508 7.507657159 7.892413962 82401777 ureC Nitrogen Ammonification Caldicellulosiruptor saccharolyticus DSM 8903 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Caldicellulosiruptor;species:Caldicellulosiruptor saccharolyticus; 7.51187755 7.349599047 170695258 ChrA Metal Resistance Chromium Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 7.572329828 7.535558776 7.648196381 7.086721155 7.609088225 7.713106073 7.446884817 28853256 vanA Carbon cycling Carbon degradation Others Pseudomonas syringae pv. tomato str. DC3000 7.480407703 7.66539301 7.486275864 7.348359568 7.496556882 7.782576934 7.593439308 7.463036019 7.419007503 76877322 alkK Organic Remediation Others Pseudoalteromonas haloplanktis TAC125 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas haloplanktis; 7.31732653 7.102529782 7.020547592 110623050 arsB Metal Resistance Arsenic Rhodococcus sp. B03 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.382096954 8.575749388 8.286487696 8.61911805 8.860281664 8.702980299 8.858170342 8.674767107 8.791037124 2569955 AceA Carbon cycling Carbon degradation others Coprinopsis cinerea superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis; 7.840000072 7.418819135 7.21526722 6.959069392 7.500061252 7.716198909 84382336 pimF Organic Remediation Aromatics Aromatic carboxylic acid Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 8.130051431 7.658051205 8.044029901 8.302299531 8.301299449 8.265446123 7.871111319 86609664 fnr Stress Oxygen stress Synechococcus sp. JA-2-3B'a(2-13) 7.531216693 7.689834067 7.120055308 7.577794763 7.534311743 7.40261407 7.677422493 148261089 tyrosine_protein_kinase_EPS Bioleaching EPS Acidiphilium cryptum JF-5 7.561580536 7.800659994 7.794213928 8.154086804 7.79700044 7.660777555 7.511375477 7.40520528 33576841 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bordetella bronchiseptica RB50 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella bronchiseptica; 8.382239635 8.226029508 8.058361882 8.080162936 7.940655112 7.682303585 7.986693555 218756331 hydrogenase Energy process Energy process Desulfovibrio vulgaris str. 'Miyazaki F' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 9.28179815 9.34052133 9.512851204 94499710 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Oceanobacter sp. RED65 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Bermanella; 7.403843791 7.213729094 86145220 sigma_38 Stress Sigma factors Vibrio sp. MED222 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.676963087 7.404828677 7.156364819 7.053845941 116488841 gyrB other category gyrB Silicibacter pomeroyi 7.178674083 7.23376851 7.281891434 7.565221824 7.082827524 7.684349832 7.414575897 7.685045092 120558044 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Shewanella sp. W3-18-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 7.837534824 8.023061093 8.036082692 8.031315691 8.190046653 8.568247416 8.50454074 8.099668812 147921290 gyrB other category gyrB uncultured methanogenic archaeon RC-I 8.094365018 7.855531894 7.790812291 7.550438569 7.979159001 7.942957672 8.251758786 8.135479289 7.806323585 89350105 pcaG Organic Remediation Aromatics Other aromatics Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.027164211 7.902595473 7.771333949 7.285636137 8.073472555 7.810751515 7.750157273 7.80772214 7.501757489 118571010 hrcA Stress Heat shock Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 7.154358771 7.280441346 7.473019798 7.133615151 7.666284561 27360972 pilin virulence pilin Vibrio vulnificus CMCP6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 7.292851978 7.147900184 158422443 catB Organic Remediation Aromatics BTEX and related aromatics Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 7.259145304 7.53539317 7.39258172 7.453850443 7.790712835 6.962857411 7.490336399 212539626 pcpB Organic Remediation Herbicides related compound Penicillium marneffei ATCC 18224 7.407617218 7.725449146 7.290513666 7.268569947 7.132977708 7.601379397 7.546635999 7.58130575 190696452 ppk Phosphorus Phosphorus utilization Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.59278324 7.499053717 7.488455178 7.111606253 7.365121374 7.654717692 7.245087443 7.315025249 7.193660357 197087086 ahpC Stress Oxygen stress Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 8.015784166 8.338268619 8.654711926 8.315822717 8.812778659 8.059125644 8.682444975 8.852591896 8.563002615 15080889 dsrA Sulphur sulfite reductase Desulfotomaculum thermosapovorans superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 7.295057515 7.460491532 7.239175697 7.168377997 6.885051846 7.485347835 109452503 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.498603038 7.166964171 7.209840827 7.071713575 7.486242066 169016044 ara Carbon cycling Carbon degradation Hemicellulose Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 7.726195402 7.411577181 7.274843942 7.347466925 7.097830231 7.863959549 7.519390435 7.427647467 7.300818151 37200317 hly virulence hemolysin Vibrio vulnificus YJ016 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 7.209546572 7.142221067 7.212238475 6.798089073 6.766958197 7.440053822 170938655 fnr Stress Oxygen stress Cupriavidus taiwanensis 7.748764987 7.471961348 156867673 obgE Stress Radiation stress Clostridium leptum DSM 753 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 7.443324799 7.073691817 118570500 oxyR Stress Oxygen stress Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 7.910672858 7.904368519 7.508236472 7.822631285 7.858415278 7.490919611 7.674151244 51587623 gyrB other category gyrB Corallococcus coralloides superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Corallococcus; 7.718735371 7.356855015 7.347997759 7.102817762 6.944520879 7.297828397 15159204 pulA Carbon cycling Carbon degradation Starch Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.826821611 7.715794229 7.697578877 7.736995439 7.906351074 7.791480545 7.600216611 7.802702218 17231274 CopA Metal Resistance Copper Nostoc sp. PCC 7120 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc; 8.207842275 8.343166393 8.223222354 7.897072576 7.811389385 7.946142531 7.900616222 7.889525899 8.208364208 256583474 sigma_70 Stress Sigma factors Cryptobacterium curtum DSM 15641 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Cryptobacterium;species:Cryptobacterium curtum; 7.029404675 7.026662392 226973676 DNA_polymerase_type_I Bacteria phage REPLICATION Shigella phage phiSboM-AG3 order:Caudovirales;family:Myoviridae; 7.602619508 7.438039092 7.192363306 7.174303231 7.231442575 7.541485891 7.04260572 7.328885828 7.190357804 194337111 CopA Metal Resistance Copper Pelodictyon phaeoclathratiforme BU-1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 7.936341432 8.019668712 7.683750102 7.481857019 7.552047931 7.535267182 7.79380175 7.529326306 7.293804691 256634276 sigma_32 Stress Sigma factors Acetobacter pasteurianus IFO 3283-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pasteurianus; 7.542711229 7.654855504 7.482045524 7.102736031 7.421930473 7.233894639 7.167631396 7.172096062 76803410 pstB Stress Phosphate limitation Natronomonas pharaonis DSM 2160 7.176949759 7.294315747 7.344804674 6.776056005 7.356901957 145220053 pcc Carbon cycling Carbon fixation Prosthecochloris vibrioformis DSM 265 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeovibrioides; 7.145860742 7.228871036 7.819299023 7.294165013 6.914827859 8.009972588 7.206010939 6.941798373 177841522 sigma_24 Stress Sigma factors Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 7.679886089 7.648128654 7.728236678 7.363047138 7.214809439 7.680775359 7.431579579 7.569526868 7.355048267 149202581 phoB Stress Phosphate limitation Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.378160629 7.116848176 7.19388862 7.405880155 6.887475416 7.474372549 223585858 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.59529688 7.809328538 8.03380261 7.550053833 7.926872519 8.05887908 7.69896253 7.958097419 7.799710891 18034265 APS_AprA Sulphur adenylylsulfate reductase Desulfocapsa thiozymogenes superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfocapsa; 7.832830538 8.025662712 7.687659001 7.268948645 7.779149448 7.683445131 7.606874873 7.664384985 15613907 hrcA Stress Heat shock Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 6.574760918 7.268460626 113954312 SmtA Metal Resistance Miscellaneous Synechococcus sp. CC9311 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.291548979 7.574282951 7.51219104 90407543 sigma_70 Stress Sigma factors Psychromonas sp. CNPT3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas; 7.599652481 7.377413578 7.568335708 7.551476575 7.369561217 7.520252278 259347147 pstC Stress Phosphate limitation Silicibacter sp. TrichCH4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.988517155 7.792711822 7.943577477 7.776367154 8.101273549 7.871714882 7.763065838 7.559105291 7.903392795 50085736 nahA Organic Remediation Aromatics Polycyclic aromatics Acinetobacter sp. ADP1 7.181823284 7.024268061 7.129563367 6.827149217 7.274165617 6.972946296 6.748420672 268317907 phoB Stress Phosphate limitation Rhodothermus marinus DSM 4252 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 8.419463865 8.040135395 7.736769458 8.215159559 8.017299767 8.095254411 8.073183719 7.968952158 8.007288146 154161489 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 7.905188417 7.889840215 7.706450917 7.703279191 7.939787363 8.14627135 7.878932943 7.802155918 7.685190737 158138899 narG Nitrogen Denitrification uncultured bacterium 7.318731705 7.2715145 7.133653711 6.952979528 6.899266754 7.217957194 21213049 B_lactamase_C Antibiotic resistance Beta-lactamases Enterobacter nimipressuralis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 7.165679061 7.332129113 45694 gyrB other category gyrB Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.41161081 6.904920415 7.288638249 6.975507811 218294894 sox Sulphur Sulphur oxidation Thermus aquaticus Y51MC23 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus aquaticus; 7.975626236 7.84474435 7.721729007 7.81372185 7.991905744 8.108430731 8.033018581 7.916406731 75992426 dxnA Organic Remediation Aromatics Heterocyclic aromatics Terrabacter sp. DBF63 7.790531512 8.124159208 7.627594305 7.832787828 8.43536247 8.086757857 7.786757555 7.935209554 21325220 ChrA Metal Resistance Chromium Corynebacterium glutamicum ATCC 13032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 7.314493736 7.287264993 7.57366048 7.445910985 7.290061827 7.231108698 87135181 chnB Organic Remediation Other Hydrocarbons Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 7.716211742 7.551572666 7.738537729 7.860965798 7.509060764 7.645278368 7.598550672 7.561454941 109453640 BchY other category chlorophyllide reductase Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 7.644844757 7.506547698 7.393130842 7.31205095 7.702691736 7.794132394 7.6510571 7.493746939 7.430682899 170143515 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 8.054765115 8.112039664 7.651070634 8.00570813 7.964067297 7.911859621 7.773108894 56679672 FTHFS Carbon cycling Acetogenesis Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 7.601358183 7.456284933 7.386335912 7.108411975 7.3988774 8.021858613 7.740655404 7.179970454 7.271262463 223897521 glnR Stress Nitrogen limitation Streptococcus suis 89/1591 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus suis; 7.128984399 7.196887099 6.913296399 6.744901368 6.77172082 7.346592906 83026026 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 7.156831199 7.349025542 7.391717838 7.181574904 7.017333175 7.679663596 7.256181103 7.514759218 226907094 narI Stress Oxygen limitation Citrobacter sp. 30_2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter; 7.911542811 7.504944066 8.412873977 8.087804392 7.433130757 7.829810608 268549549 amoA Nitrogen Nitrification superkingdom:Archaea; 7.438538431 7.523731269 7.201200905 6.768628602 7.36726277 154250851 pstC Stress Phosphate limitation Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 7.273133368 7.182906828 6.990476288 7.128225811 7.581898324 7.087875199 7.082306452 7.256332316 228721343 ctsR Stress Protein stress Bacillus cereus AH603 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 7.314285984 6.925206132 7.178449793 13898403 dsrA Sulphur sulfite reductase uncultured benzene mineralizing bacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 7.446956383 6.996227327 7.204182949 6.857980856 7.727858919 7.289028917 6.949205497 6.916880342 71366115 CopA Metal Resistance Copper Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 7.26936359 7.819479431 7.774425461 7.324809284 7.388451909 7.712842481 7.501891296 184197451 pheA Organic Remediation Aromatics Other aromatics Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.581061754 7.645588623 7.607273438 7.69736331 7.297281429 186472221 MFS_antibiotic Antibiotic resistance transporter Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.551688747 7.312068385 7.654282258 8.129195177 7.998568418 7.711217077 7.963423376 7.686414381 126645307 ahpC Stress Oxygen stress Algoriphagus sp. PR1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cyclobacteriaceae;genus:Algoriphagus; 7.286333811 7.145963605 108462197 mhpA Organic Remediation Aromatics Aromatic carboxylic acid Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 7.471517764 7.424300859 6.989136464 7.135396599 7.432558817 7.372028684 7.378888188 227527959 pstB Stress Phosphate limitation Lactobacillus ruminis ATCC 25644 7.196994761 7.027682153 7.096324739 6.801459284 6.934909315 7.624297163 7.143118485 6.975237436 17385538 narG Nitrogen Denitrification uncultured bacterium 6.889082531 7.001635684 31407692 Xamo Organic Remediation Other Hydrocarbons Acinetobacter calcoaceticus 7.116351432 7.236248442 226357364 sigma_24 Stress Sigma factors Deinococcus deserti VCD115 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 7.539122025 7.554533139 7.784530093 7.327179542 6.966518876 7.926051836 7.045983737 7.323217762 7.145802942 83316552 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.658676612 7.69293647 7.879398926 7.537515796 7.864931854 160941150 sigma_70 Stress Sigma factors Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 7.706301349 7.576480828 7.555750646 7.360592597 7.353296158 7.626257366 7.372148479 7.25183679 7.321302725 242240209 sigma_24 Stress Sigma factors Dickeya dadantii Ech703 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 7.89396128 7.750573682 7.451509991 7.636594079 7.732252109 8.064077057 7.942045482 8.080977156 7.522152248 17942394 tftH Organic Remediation Aromatics Chlorinated aromatics Burkholderia cepacia superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.768639941 7.748377772 7.51202852 7.314368863 7.788004373 7.755835426 7.726149677 7.716214196 7.513488019 159905889 CopA Metal Resistance Copper Methanococcus maripaludis C6 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanococcaceae;genus:Methanococcus;species:Methanococcus maripaludis; 7.553349853 7.343436223 7.527154068 7.711681041 7.399578199 7.881077686 7.564281592 7.430118662 7.556994909 74055516 gyrB other category gyrB Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 8.046758729 7.576492196 7.432700519 7.71633112 7.415016049 7.295556184 7.876455854 194363937 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 7.565888196 7.597206385 7.762448903 7.451991815 7.835902946 7.860048355 7.921324893 8.154739405 8.016545525 77761103 MFS_antibiotic Antibiotic resistance transporter Xanthomonas campestris pv. campestris str. 8004 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 7.699322922 7.396936922 7.883168188 7.870373255 7.331390955 7.911569346 7.726012986 8.000103065 8.256128419 4388628 endoglucanase Carbon cycling Carbon degradation Cellulose Clostridium cellulovorans superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 6.849590721 6.998055544 260613554 pstC Stress Phosphate limitation Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 7.354937551 7.265876191 71741024 TerC Metal Resistance Tellurium Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 8.170922967 8.09308183 7.641424396 8.026547919 8.061826812 8.10339071 7.674187241 7.634128578 7.779050294 109452398 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.466635184 7.861366125 7.617017162 7.391049226 7.525410318 182677267 CopA Metal Resistance Copper Beijerinckia indica subsp. indica ATCC 9039 7.423446612 7.178151234 150842 gdh Nitrogen Ammonification superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas; 8.05209064 7.788879557 7.655771666 7.811248821 7.384029135 7.26869874 94314194 Catechol Organic Remediation Aromatics Other aromatics Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 7.908160384 7.726319794 7.504197687 7.537699147 7.885362764 7.797845641 7.579289408 7.726744963 7.716249124 119226132 gyrB other category gyrB Rhodococcus corynebacterioides superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.195722249 8.072817362 7.926423456 8.946586979 7.932091514 8.147911378 7.968817391 8.027399132 254448863 sigma_24 Stress Sigma factors gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.679461768 7.461173345 7.39194706 6.87796607 6.911553929 7.791225662 7.471046741 7.06360266 7.414641639 264672933 cydB Stress Oxygen limitation Caulobacter segnis ATCC 21756 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 7.886044241 8.003585956 8.162811332 8.330562798 7.98694389 8.209154509 7.76616613 8.004043893 8.200858461 241663379 fnr Stress Oxygen stress Ralstonia pickettii 12D 7.094566763 7.103785679 7.330583486 23978259 gyrB other category gyrB Xenococcus sp. PCC 7307 superkingdom:Bacteria;phylum:Cyanobacteria;order:Pleurocapsales;genus:Xenococcus; 7.853125088 7.773549322 7.699337058 7.63765664 7.704340965 7.468356961 7.545579802 7.269255171 77965304 nbaC Organic Remediation Aromatics Nitoaromatics Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.230823352 8.210483921 8.135391524 7.648074083 8.102688699 7.63575199 8.076947157 8.31244028 8.155362125 77380719 SMR_antibiotics Antibiotic resistance transporter Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.607582026 7.945958409 7.90410554 7.655374083 8.229856067 7.960852054 8.007815454 7.742351752 8.023983224 262396558 pstC Stress Phosphate limitation Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 6.620761713 7.456919688 186465117 ChrA Metal Resistance Chromium Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 6.985952543 7.095482353 7.363410436 52858191 gyrB other category gyrB Lactobacillus gasseri ATCC 33323 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus gasseri; 7.815921946 7.837932539 7.70404615 7.693666584 7.531940392 7.807097804 198266338 SMR_antibiotics Antibiotic resistance transporter Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 7.341597108 7.378554858 7.496493169 7.598842487 7.488048926 7.303349596 7.338156539 7.137971825 7.382040513 84687644 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.710914369 7.458999895 7.510244527 6.891123086 7.653755806 7.469729902 7.350635021 7.410944636 163734027 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 7.107941163 7.010904483 7.010610796 6.790075729 6.686574011 7.591319919 189420338 sigma_70 Stress Sigma factors Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 7.808602139 7.748923825 7.696380692 7.254720121 7.746138972 7.643944003 7.604311144 7.656288471 170742400 amyA Carbon cycling Carbon degradation Starch Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 9.529099153 9.416612495 8.999928678 53757516 sox Sulphur Sulphur oxidation Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 7.499931604 7.685466237 7.880865751 7.607384649 7.703922526 8.054909136 7.684185373 7.937105694 7.597186562 76058121 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.271715399 6.691343546 7.619467331 7.61498669 7.490489105 7.995111851 7.375803616 7.501132015 7.62247916 256758625 oxyR Stress Oxygen stress Thiomonas intermedia K12 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas;species:Thiomonas intermedia; 7.377848439 7.34507427 7.644472121 7.737713219 7.65758211 7.337032538 7.382953866 7.357040683 149191441 ureC Nitrogen Ammonification Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 7.315092205 7.114613278 7.111697628 6.542785304 7.410477859 6.925743371 7.202473254 238759169 proW Stress Osmotic stress Yersinia aldovae ATCC 35236 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia aldovae; 7.249083256 8.000315158 7.393786301 7.663573913 7.658204432 255110068 sigma_24 Stress Sigma factors Sideroxydans lithotrophicus ES-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Sideroxydans;species:Sideroxydans lithotrophicus; 7.796723436 7.831211639 8.067746643 7.409443538 7.875220677 8.013800072 8.007490219 7.734137014 8.048355553 115432154 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.355915105 7.469214294 7.128943804 7.216875613 7.402416003 7.697504101 7.409483817 7.147909741 7.213948901 83953656 pstB Stress Phosphate limitation Sulfitobacter sp. NAS-14.1 7.96452745 7.77151792 7.343433431 7.281443692 7.770835064 7.60415495 7.589909138 7.671939429 151559546 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 7.862360414 7.605353434 7.540103577 7.694703385 7.778670017 7.854035706 7.924502283 7.570479348 7.644387376 15603202 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Pasteurella multocida subsp. multocida str. Pm70 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Pasteurella;species:Pasteurella multocida; 7.387558106 7.239364872 7.137394527 118168807 BADH Organic Remediation Aromatics Other aromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 7.144811359 7.241455365 156057439 nbaC Organic Remediation Aromatics Nitoaromatics Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 7.617622432 7.138164585 7.390975498 7.288009829 6.8949562 7.615372006 7.356419674 7.324993403 7.206534057 268312132 ABC_antibiotic_transporter Antibiotic resistance transporter Thermomonospora curvata DSM 43183 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora;species:Thermomonospora curvata; 7.923103082 8.201067186 8.002263804 7.760496103 8.029375317 8.166016375 7.961485963 7.838569073 7.896433563 149359925 ChrA Metal Resistance Chromium Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 8.096732547 7.984632727 7.915249078 7.913742478 8.424316329 8.250300969 7.978368965 7.761087271 8.307727529 91692019 MFS_antibiotic Antibiotic resistance transporter Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.218087957 7.235299885 7.581151962 7.413269388 7.594550912 7.685939129 7.46928832 7.713026505 7.363169738 76577536 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.522468535 7.276158235 7.655886996 7.35045861 7.286506195 7.735995992 7.400330832 7.211839946 7.349438332 114191853 pheA Organic Remediation Aromatics Other aromatics Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.859381069 7.758782922 7.64042648 7.308585156 7.879583597 7.962367991 7.889224053 8.003932363 7.956733587 77961632 ureC Nitrogen Ammonification Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 7.477447663 7.413403774 7.523662098 7.096885643 7.349257429 7.208783394 7.382718625 7.395195362 7672747 xylanase Carbon cycling Carbon degradation Hemicellulose Azospirillum irakense superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum; 7.568314663 7.103928655 7.261744669 170027473 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.849265555 7.785820055 7.628789205 7.520894654 7.474879803 7.84972868 7.445210775 7.440583027 172041126 pstB Stress Phosphate limitation Corynebacterium urealyticum DSM 7109 7.304369857 7.428258562 7.275318746 7.322922558 7.550534534 7.750010654 7.578759682 7.430062566 7.603899227 116226351 sigma_24 Stress Sigma factors Candidatus Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 7.702084335 7.439183916 7.057880105 7.017535649 7.38568276 7.646265802 110833407 narG Nitrogen Denitrification Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 7.194116803 7.358525139 7.723122725 7.471293326 7.557050837 7.864820607 7.745389263 7.334812359 7.959881493 77684206 gyrB other category gyrB Alkaliphilus metalliredigenes QYMF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus metalliredigens; 7.384896929 7.367857926 7.36031495 7.070061826 6.835157618 7.520160873 189349367 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 7.339427466 7.119117085 7.318216133 6.894138676 7.377302195 7.24742599 261210105 sigma_38 Stress Sigma factors Vibrio sp. RC341 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.127929167 7.120727999 6.883264372 6.613208077 7.349475085 198248557 phn Organic Remediation Herbicides related compound Acidithiobacillus ferrooxidans ATCC 53993 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 7.718325006 7.462559249 126658638 grpE Stress Heat shock Cyanothece sp. CCY0110 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.518142938 7.581979546 7.912873139 7.490688217 7.670317093 91200118 sigma_24 Stress Sigma factors Candidatus Kuenenia stuttgartiensis superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;genus:Candidatus Kuenenia; 7.054865793 7.147030893 7.186277027 6.959809605 7.350676336 190700816 dehH Organic Remediation Chlorinated solvents Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.165361579 7.352745727 7.231434943 7.204434894 7.456586518 7.05591613 7.192678061 266623356 fnr Stress Oxygen stress Clostridium hathewayi DSM 13479 7.15930175 7.091211657 6.832421028 7.397769226 226428749 xylA Carbon cycling Carbon degradation Hemicellulose Geobacillus caldoxylosilyticus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.624172443 7.656462913 7.440466133 7.348490341 7.842010676 7.854970188 7.678887525 7.962365877 7.718575882 17741950 arsB Metal Resistance Arsenic Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.271790894 6.891863763 7.492863114 166711826 atzA Organic Remediation Herbicides related compound Xanthomonas oryzae pv. oryzicola BLS256 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 7.571955994 7.693882394 7.88479817 7.773548197 7.524463025 7.8766044 7.553133843 7.656200032 8.065413433 34498175 pimF Organic Remediation Aromatics Aromatic carboxylic acid Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 7.215262946 7.116077441 6.933118686 7.379659261 6.87463772 6.985378265 7.176623714 164598140 exoglucanase Carbon cycling Carbon degradation Cellulose Xylaria polymorpha superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Xylariales;family:Xylariaceae;genus:Xylaria; 7.593285771 7.375042243 7.316219303 7.269319857 7.23744256 7.899429198 7.418732508 7.39116634 56551179 Mex Antibiotic resistance transporter Zymomonas mobilis subsp. mobilis ZM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Zymomonas;species:Zymomonas mobilis; 6.887802774 7.56609524 189219518 pmoA Carbon cycling Methane Methane oxidation Methylokorus infernorum V4 superkingdom:Bacteria;phylum:Verrucomicrobia;order:Methylacidiphilales;family:Methylacidiphilaceae;genus:Methylacidiphilum;species:Methylacidiphilum infernorum; 7.355847151 7.684624172 7.233331992 6.945352322 7.338684962 7.614081447 7.490048108 7.399584112 7.498476012 89512416 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.45841746 7.381550779 7.23631153 7.330656524 7.425844643 7.112074928 7.170662032 7.49494492 148270473 sigma_70 Stress Sigma factors Thermotoga petrophila RKU-1 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga;species:Thermotoga petrophila; 7.283398751 7.077660115 6.932257265 6.792203978 170721229 vdh Carbon cycling Carbon degradation Others Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.86605597 7.94949349 7.775177486 7.544261574 7.473609911 7.581423755 7.405208722 7.849281768 111617776 endochitinase Carbon cycling Carbon degradation Chitin Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 8.035832113 8.154919592 7.975540753 8.252404396 7.864895675 8.180987617 8.103009936 8.078347311 8.132614941 113868404 ppx Phosphorus Phosphorus utilization Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 7.90915425 7.832372075 7.431251632 7.214096999 7.797568827 7.612074345 7.293114603 154238357 rubisco Carbon cycling Carbon fixation Thiomonas sp. 3As superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas; 7.307827747 7.428183566 7.422316032 7.286873131 7.346896514 7.528949324 7.194378423 7.23301129 7.170154824 228569285 glnA Stress Nitrogen limitation Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 8.139816026 8.083190941 7.643716121 7.970687351 7.905645416 7.599075444 7.739385437 7.639351058 270333075 sigma_24 Stress Sigma factors Prevotella bergensis DSM 17361 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bergensis; 8.965366448 7.142695195 7.437098429 7.680802242 7.988215421 8.464774358 8.375865346 7.3000816 116634797 narG Nitrogen Denitrification uncultured bacterium 7.194455638 7.405621016 71383814 nasA Nitrogen Assimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.287539276 7.358730149 7.495156868 7.098692876 6.927959801 7.55973778 7.262284808 7.203754207 7.134800429 5458466 phoA Stress Phosphate limitation Pyrococcus abyssi GE5 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Pyrococcus;species:Pyrococcus abyssi; 7.22444656 6.962946185 7.024976563 116224393 exaA Organic Remediation Chlorinated solvents Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 7.461352165 7.435630372 7.248342697 6.946421509 7.092351339 52003007 catB Organic Remediation Aromatics BTEX and related aromatics Bacillus subtilis phage PBSX superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 7.872908249 7.634599957 7.281727499 7.620552607 160935059 sigma_70 Stress Sigma factors Clostridium leptum DSM 753 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 7.322820896 7.223918063 7.139149777 7.249635784 7.183149 7.584440436 7.16155308 7.746794622 7.789791183 114847367 tutFDG Organic Remediation Aromatics BTEX and related aromatics Desulfovibrio vulgaris subsp. vulgaris DP4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 8.308131732 8.19117606 8.256271198 7.885172192 8.260784475 7.643928511 8.15404253 8.33304982 123966166 ahpC Stress Oxygen stress Prochlorococcus marinus str. MIT 9515 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 6.769462644 6.758942441 6.745558942 148251653 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Bradyrhizobium sp. BTAi1 9.070132614 9.156702394 9.119129766 9.452576172 9.277167409 9.809200312 9.148587707 9.40359234 9.131136881 537500 endoglucanase Carbon cycling Carbon degradation Cellulose 7.324620442 7.262380542 7.555372484 7.116345629 7.507401092 7.890943636 7.449969052 7.430345391 90329412 proV Stress Osmotic stress Photobacterium profundum 3TCK superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 7.712212004 7.88057836 7.936665191 8.178552413 7.724350958 7.872842323 8.21592363 7.687165849 220912362 glnA Stress Nitrogen limitation Arthrobacter chlorophenolicus A6 7.751932588 7.425024174 7.692317353 7.416787576 7.414888161 7.637386144 7.410385178 7.140743258 7.000966541 163811997 Ni_Fe_hydrogenase Energy process Energy process Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.554028021 7.061775536 7.324056743 7.360690205 7.25922278 7.682254514 7.257643655 7.13049756 7.444768265 110612635 gyrB other category gyrB uncultured bacterium superkingdom:Bacteria; 7.098049812 7.027630699 7.182756177 160345369 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 7.629017984 7.636057287 7.376056263 7.484564272 7.36649921 8.037654115 7.528340462 7.295171068 7.331783347 111019695 alkK Organic Remediation Others Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7.579789387 7.39596028 7.154163782 29824653 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.923066056 7.993593681 7.512720022 7.487218716 7.801512858 7.760748272 7.464688528 7.913314539 27376048 tfdA Organic Remediation Aromatics Chlorinated aromatics Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.539491666 7.150002561 6.96651117 26278786 narG Nitrogen Denitrification uncultured bacterium 8.051514602 8.019470899 7.849734187 7.555554449 7.998823157 7.874941457 7.777953219 7.474401446 7.673116912 14026713 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 7.355135863 7.808582547 7.651539456 7.610542425 7.186793363 7.801801079 7.038829676 7.384882135 7.255158065 119356868 pstB Stress Phosphate limitation Chlorobium phaeobacteroides DSM 266 7.24401115 6.985390287 7.048807389 84385198 iro virulence Vibrio splendidus 12B01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 7.409698428 7.085183269 7.052198573 7.40575668 83310698 linC Organic Remediation Pesticides related compound Magnetospirillum magneticum AMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 7.296343951 7.60818985 7.281570876 6.952812925 7.293020269 7.575733817 7.221800857 7.056119925 7.273674074 261407025 katE Stress Oxygen stress Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.159235663 6.968308999 7.318798321 7.109246455 7.385146997 192284437 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.370432897 8.32880433 8.163799997 7.705473743 8.382601965 8.191145289 7.907720288 8.030443187 8.428399056 240860285 xylA Carbon cycling Carbon degradation Hemicellulose Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.527759652 7.486470616 7.555780438 7.18127271 7.775743255 7.576711116 7.615048081 7.508592211 82947308 dsrB Sulphur sulfite reductase Magnetospirillum magneticum AMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 8.102827898 7.840381938 8.456109368 7.996882657 7.793705842 8.600212337 7.367713044 7.683332803 7.629820007 8671012 dsrA Sulphur sulfite reductase Desulfobulbus rhabdoformis 7.145430872 7.121103093 7.276004819 113877828 ppx Phosphorus Phosphorus utilization Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 7.632232536 7.656007586 7.242289993 8.034551875 8.644296033 8.163621387 8.443991956 8.450892341 8.53306516 144901310 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Magnetospirillum gryphiswaldense MSR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 6.896434004 7.325333253 6.817124341 7.498150431 190574688 narI Stress Oxygen limitation Stenotrophomonas maltophilia K279a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 7.644145454 7.375058443 7.514417327 148846571 gyrB other category gyrB Planctomyces maris DSM 8797 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces maris; 7.041577271 7.109479174 6.575390646 7.382699686 32895238 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.525986212 7.492771597 7.443865907 6.887342054 6.943213493 7.520339293 7.111987937 7.410908189 160917447 narG Nitrogen Denitrification uncultured bacterium 7.380756122 7.37392017 7.407046642 158440143 catB Organic Remediation Aromatics BTEX and related aromatics Clostridium bolteae ATCC BAA-613 7.145680987 7.034393317 7.166498593 6.898131998 6.612167863 7.395462491 83955200 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 8.973149636 7.59920313 7.812174554 7.604855731 8.123021195 7.950164451 8.115123276 7.911060319 7.937572975 262210619 pstB Stress Phosphate limitation Comamonas testosteroni CNB-2 7.463801027 7.273805776 7.424020327 7.432160757 7.601348109 7.701723888 7.882393212 7.592084536 115397681 phenol_oxidase Carbon cycling Carbon degradation Lignin Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.902452815 7.87751683 7.733689426 7.895486395 7.849416317 7.961016726 7.92827525 7.820572888 7.585562867 99083161 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.381938756 7.092033317 7.093791638 6.500453998 6.809436195 7.447343707 146305826 exaA Organic Remediation Chlorinated solvents Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 7.232328332 7.749496704 7.905923572 8.05500011 7.290211698 8.013519336 7.385604074 7.692572964 7.580215213 222449067 SMR_antibiotics Antibiotic resistance transporter Chloroflexus sp. Y-400-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus; 7.299103256 7.591321703 7.423878745 7.306508372 7.490331421 7.617432562 7.442794459 7.456330178 34500167 gyrB other category gyrB Providencia rettgeri superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia; 7.150745096 7.209914466 261857048 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.893442376 8.083466032 7.664160824 7.62619183 7.657440308 223890829 sigma_24 Stress Sigma factors bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 6.947818434 6.95087447 60491383 nrfA Nitrogen Dissimilatory N reduction Bacteroides fragilis NCTC 9343 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 7.784438276 7.897816962 7.848220739 7.417840107 8.100813636 7.862467887 8.062570219 8.261861786 7.369742007 113478360 ahpC Stress Oxygen stress Trichodesmium erythraeum IMS101 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Trichodesmium;species:Trichodesmium erythraeum; 8.102609603 7.807722177 7.496419341 7.445205714 7.36109069 7.462066165 7.414325654 163855706 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Bordetella petrii DSM 12804 7.686516174 7.332299412 7.547705889 8.069455494 7.468996319 8.008810735 7.523273673 7.350577857 7.735898441 77378553 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.108278466 7.457181907 7.63852071 7.45918191 7.701138056 7.446553308 7.435666467 163802898 pilin virulence pilin Vibrio sp. AND4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.263857666 7.197318288 7.070743288 7.440032526 7.315802397 182412745 TerC Metal Resistance Tellurium Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 8.073727422 7.715392232 7.77515545 7.210744569 7.627066862 7.534706444 7.332006368 7.551391643 188522463 glnA Stress Nitrogen limitation Xanthomonas oryzae pv. oryzae PXO99A 7.655924986 8.012456561 7.986237008 8.212030065 7.774175228 7.834551668 8.022581325 8.285346128 7.901695681 145575267 B_lactamase_C Antibiotic resistance Beta-lactamases Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 7.966463859 8.128672328 8.085965034 8.229434246 8.406177023 8.419523024 8.343000155 8.273663139 115255388 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.196856915 7.311128386 13173182 rubisco Carbon cycling Carbon fixation Chlorobium limicola f. thiosulfatophilum superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum; 7.005706875 6.916631526 255104158 sigma_70 Stress Sigma factors Thalassiobium sp. R2A62 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Thalassobium; 7.465260771 7.62606008 7.384301693 7.124703993 7.621368076 7.686539795 7.751546855 7.603778748 7.322133661 256639289 ABC_antibiotic_transporter Antibiotic resistance transporter Acetobacter pasteurianus IFO 3283-07 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pasteurianus; 7.85126711 8.44824344 8.221720814 7.695993429 8.043532556 8.00048379 7.865200972 8.085509092 157364688 ChrA Metal Resistance Chromium Thermotoga lettingae TMO superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga;species:Thermotoga lettingae; 7.722902165 7.918707964 8.507156924 7.863257357 7.946125658 8.341715935 7.693775157 8.163202244 7.838200144 47092337 cydB Stress Oxygen limitation Listeria monocytogenes str. 4b H7858 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria monocytogenes; 7.028205313 6.856324348 7.194330695 6.859652396 7.325449774 1052522 groEL Stress Heat shock Schizosaccharomyces pombe superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Schizosaccharomycetes;order:Schizosaccharomycetales;family:Schizosaccharomycetaceae;genus:Schizosaccharomyces; 7.430977783 7.196653837 7.149614054 7.012411443 7.417816974 227506383 pstC Stress Phosphate limitation Corynebacterium striatum ATCC 6940 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium striatum; 7.622227415 7.528033888 7.582709273 7.868489144 8.188572482 7.809296648 7.80413736 7.961287833 256685442 aclB Carbon cycling Carbon fixation Jonesia denitrificans DSM 20603 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 7.244682288 7.457754413 7.150690811 189484496 pectinase Carbon cycling Carbon degradation Pectin Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 7.331269452 7.384593415 7.255339714 6.882018968 6.839356398 7.561978723 6.927268874 7.194734455 126249774 dsrB Sulphur sulfite reductase Pyrobaculum calidifontis JCM 11548 7.720677988 7.656300013 7.805145331 7.446869353 7.171900121 8.041137423 7.340660673 7.323659669 197210524 ArsC Metal Resistance Arsenic Escherichia coli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 7.189602774 6.775353252 7.077177448 32895084 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.951778256 7.75785973 8.058106738 7.999768513 8.362558828 8.200810691 8.31250879 8.034915481 8.208025991 146398289 cytochrome Energy process Energy process Geobacter uraniireducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 8.038852146 7.51466335 7.61753233 7.638209241 7.976316816 258638500 iro virulence Pantoea sp. At-9b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 7.475121385 7.744226266 7.795638372 7.692740489 8.142835898 7.88094414 8.028452821 8.127250888 239916765 AceA Carbon cycling Carbon degradation others Micrococcus luteus NCTC 2665 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus;species:Micrococcus luteus; 8.17287621 8.295015255 8.236503095 7.75064355 8.469670573 8.276237193 8.179276667 7.921107825 229747077 Tet Antibiotic resistance other Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 9.870279981 10.2297007 10.20370486 166030947 sigma_70 Stress Sigma factors Dorea formicigenerans ATCC 27755 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Dorea;species:Dorea formicigenerans; 7.634868728 7.541586467 7.645742047 7.36607259 7.929754028 7.652716797 7.530311388 7.18269567 7.688262602 148511138 rubisco Carbon cycling Carbon fixation Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.451005649 7.160657856 6.982233278 6.871248224 7.567398278 126641164 vanA Carbon cycling Carbon degradation Others Acinetobacter baumannii ATCC 17978 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 7.443716662 7.193245648 7.002231477 162568525 aoxB Metal Resistance Arsenic Aminobacter sp. 86 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Aminobacter; 7.772967886 7.636463883 7.600151924 7.301148217 7.821311681 8.154832474 7.589168926 7.489247274 7.778403086 157377106 phoA Stress Phosphate limitation Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 7.37622525 7.187039035 7.336456233 7.050015279 7.108791206 7.469949743 7.397144276 7.130430772 32447201 catB Organic Remediation Aromatics BTEX and related aromatics Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 7.573452241 7.217479595 7.250574956 7.545301169 7.502645906 7.555249483 7.550455811 7.280019306 7.49599178 148567267 srt virulence surface protein Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 7.24866535 7.242834935 7.03456136 7.098823819 7.582338974 37925771 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.51479908 7.409280269 7.41157714 7.214844953 7.307281408 7.581588597 7.56533769 7.227518924 164614173 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.278935035 7.263591468 256640362 SMR_antibiotics Antibiotic resistance transporter Acetobacter pasteurianus IFO 3283-07 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pasteurianus; 7.7285229 7.739268477 7.712088028 7.758280295 7.667301745 7.836105929 7.422287689 7.482523992 113732397 tfdA Organic Remediation Aromatics Chlorinated aromatics Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 6.978263936 7.333317 197759354 AceB Carbon cycling Carbon degradation others Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7.573897182 7.700810188 8.052948002 7.386981446 7.762409772 7.89154733 7.762974694 8.009083202 7.517585716 85689694 oxyR Stress Oxygen stress Erythrobacter sp. NAP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 7.302607541 7.370699234 7.806548743 7.898002279 7.62092531 8.051926556 7.416500008 7.519018477 7.46113056 91690366 exaA Organic Remediation Chlorinated solvents Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.827208172 7.842259246 7.55114794 7.914620527 7.926907446 7.923047079 7.831367275 7.779166387 7.727547902 116106977 hly virulence hemolysin Lactococcus lactis subsp. cremoris SK11 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Lactococcus;species:Lactococcus lactis; 7.98316763 7.976784416 7.751253933 7.851876582 7.683154473 7.724047506 7.753998299 7.754658426 7.882940112 28210385 phoA Stress Phosphate limitation Clostridium tetani E88 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium tetani; 8.060593682 7.339893217 7.72266647 188520791 nbaC Organic Remediation Aromatics Nitoaromatics Xanthomonas oryzae pv. oryzae PXO99A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 7.399041367 7.937096151 7.764915721 7.692736359 7.765771325 7.617643452 7.893631777 7.984651205 116208626 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 8.381224848 8.252377914 8.200564236 8.022930467 8.036201038 8.299465656 8.135409463 8.057834639 8.015683115 149122187 phn Organic Remediation Herbicides related compound Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 8.395745438 8.426606977 8.187213087 8.465070328 8.370716645 8.277945848 8.070422982 8.236926995 196178798 pstA Stress Phosphate limitation Microcoleus chthonoplastes PCC 7420 7.627204788 7.702141159 7.295560964 7.462161987 7.765589421 7.49710016 189351369 silC Metal Resistance Silver Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 8.089118524 7.90403293 7.780153323 7.270325883 7.97382777 7.729989599 7.877810727 7.956072523 83845802 nhh Organic Remediation Aromatics Nitoaromatics Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 7.753612771 8.038424481 7.699848264 7.623697234 7.484394376 7.446449075 7.919647832 259169053 SMR_antibiotics Antibiotic resistance transporter Lactobacillus antri DSM 16041 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus antri; 7.416648967 7.257719006 7.58034195 7.316615905 239918359 grpE Stress Heat shock Micrococcus luteus NCTC 2665 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus;species:Micrococcus luteus; 7.771665654 7.34152298 7.017833283 7.053608898 7.855581485 7.276640542 7.066293431 7.657685333 87136266 ZntA Metal Resistance Zinc Novosphingobium aromaticivorans DSM 12444 7.988834332 8.071268924 7.96611046 7.542973748 8.128180857 8.023439401 7.935007075 7.775790555 8.248248186 157085082 SMR_antibiotics Antibiotic resistance transporter Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 7.861784621 7.36818325 7.643751949 7.96573056 7.870290294 7.575585184 7.73124543 7.519169414 7.585348377 156233208 glnA Stress Nitrogen limitation Roseiflexus castenholzii DSM 13941 7.870499237 7.861194549 7.487575235 7.952472561 7.943388388 8.059159951 7.851209608 7.550178891 7.451438623 258634674 phoB Stress Phosphate limitation Pantoea sp. At-9b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 7.215312863 7.28163985 7.600117707 7.062602007 7.734907574 167033227 mauAB Organic Remediation Herbicides related compound Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.139628149 7.947286524 7.915583974 7.428229576 7.893312383 7.944411894 7.991067546 7.861486723 7.602858728 157164547 merP Metal Resistance Mercury Campylobacter concisus 13826 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter concisus; 7.441772908 7.217106774 7.373176637 7.079499142 7.374499098 7.127785649 7.619863362 7.378866533 255320197 pilin virulence pilin Acinetobacter radioresistens SK82 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter radioresistens; 7.600289659 6.746795733 7.107341814 7.330798876 126639087 pimF Organic Remediation Aromatics Aromatic carboxylic acid Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 7.373651691 7.672559162 7.612593861 7.960708103 6.827581177 8.283936383 7.476391161 7.156353766 7.552790004 83856430 pulA Carbon cycling Carbon degradation Starch Croceibacter atlanticus HTCC2559 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Croceibacter;species:Croceibacter atlanticus; 7.728615491 7.175368591 7.388944263 7.051518118 7.321667469 7.601164921 109290259 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.834844116 8.187753678 8.346442949 7.793168236 8.180274539 8.029993838 8.390318823 7.985166477 83858467 B_lactamase Antibiotic resistance Beta-lactamases Oceanicaulis alexandrii HTCC2633 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis;species:Oceanicaulis alexandrii; 7.525084044 7.517517514 7.274149635 6.99007715 7.240894641 7.705972107 7.1083025 7.184827883 221632522 AceA Carbon cycling Carbon degradation others Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 7.924966258 8.300229575 7.987741953 7.481037809 8.24372639 8.226144985 8.245874979 7.903463688 8.207132314 16589040 B_lactamase_A Antibiotic resistance Beta-lactamases Escherichia hermannii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 7.103603755 7.084468624 6.88169539 7.44322659 7.125529736 7.446714685 1001208 NiR Nitrogen Assimilatory N reduction Synechocystis sp. PCC 6803 7.103315675 7.092727752 146398623 MFS_antibiotic Antibiotic resistance transporter Geobacter uraniireducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 7.777677364 7.40192437 7.337080085 7.256779775 7.459153166 7.797126817 7.332804335 7.381243652 113528380 CopA Metal Resistance Copper Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 7.526166967 7.835766738 7.778986234 7.43297291 7.553364491 8.065700313 7.869386848 7.744165979 7.764251458 188028249 ArsC Metal Resistance Arsenic Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 7.20208942 7.226167262 7.65958903 7.948971823 7.335034088 7.175305297 7.5836178 7.783413638 238750275 amyA Carbon cycling Carbon degradation Starch Yersinia rohdei ATCC 43380 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia rohdei; 7.725149132 7.583764397 7.888112426 7.262037126 8.084695833 7.266475897 7.597141652 281355362 hly virulence hemolysin Victivallis vadensis ATCC BAA-548 superkingdom:Bacteria;phylum:Lentisphaerae;family:Victivallaceae;genus:Victivallis;species:Victivallis vadensis; 8.402539307 7.652756422 8.157374074 7.839018697 7.867947571 150835665 PobA Organic Remediation Aromatics Aromatic carboxylic acid Marinomonas sp. MWYL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 7.32707163 7.165404374 118592783 bphC Organic Remediation Aromatics Polycyclic aromatics Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 7.611479275 7.945432276 7.857000439 7.923991435 7.991872327 7.751152203 8.190600029 8.017346748 40746549 endochitinase Carbon cycling Carbon degradation Chitin Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.275461363 7.317443252 7.637012247 7.579471476 7.43324507 7.70893083 7.395521614 7.23778599 7.299077149 169628558 amyA Carbon cycling Carbon degradation Starch Mycobacterium abscessus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.197510787 7.380878809 7.384811969 7.29500829 7.044542358 156109676 endoglucanase Carbon cycling Carbon degradation Cellulose Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 7.10920379 7.252428304 7.157130036 114798890 ChrA Metal Resistance Chromium Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 8.17535541 7.557154531 8.033998602 8.588225703 8.173456183 8.185757929 7.500031109 8.086200839 209515073 silC Metal Resistance Silver Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 6.890208149 7.522258901 7.439216725 7.289509028 7.693620237 7.015259327 7.176089885 269125434 sigma_24 Stress Sigma factors Thermomonospora curvata DSM 43183 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora;species:Thermomonospora curvata; 7.789841653 7.724636142 7.220847631 7.64386993 7.745221015 7.917691447 7.727798682 7.824553168 7.627706045 170745427 fnr Stress Oxygen stress Methylobacterium radiotolerans JCM 2831 8.363227774 8.061103514 8.08081193 7.471298479 8.218563514 7.902992771 8.041951785 7.880293148 219543184 bphF1 Organic Remediation Aromatics Polycyclic aromatics Chloroflexus aggregans DSM 9485 7.146795712 7.106902911 6.85780446 6.566042272 7.307104083 85832975 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Leeuwenhoekiella blandensis MED217 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Leeuwenhoekiella;species:Leeuwenhoekiella blandensis; 7.343097995 7.183213567 7.198362242 148724103 cumA Organic Remediation Aromatics Other aromatics Paenibacillus sp. B-257 7.193230972 7.171302948 164598122 exoglucanase Carbon cycling Carbon degradation Cellulose Clitocybe nuda superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Clitocybe; 7.535423906 7.765022159 7.416445542 7.45149126 7.744017203 7.361193109 7.440445875 7.576649495 91974942 rubisco Carbon cycling Carbon fixation Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.611366478 7.773450141 7.759364451 7.498882241 7.990633449 7.563688201 7.645046893 7.834455384 95111953 alkK Organic Remediation Others Pseudomonas superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae; 6.954909716 6.699790989 6.979723673 214036760 phdCI Organic Remediation Aromatics Polycyclic aromatics marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.454343786 7.228414464 7.169911411 7.225083458 110340425 pstC Stress Phosphate limitation Chlorobium ferrooxidans DSM 13031 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium ferrooxidans; 8.195664481 7.942132895 7.71206842 7.093088898 7.811676942 7.624976291 7.555630203 7.568567734 7.685723048 28852055 iro virulence Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 7.483443746 7.23973711 7.508923715 7.483924957 7.246930344 7.455795607 7.208994942 7.280903194 253574666 sigma_24 Stress Sigma factors Paenibacillus sp. oral taxon 786 str. D14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 7.596722124 7.47134682 7.313850014 7.342439407 7.320840426 7.668522028 7.27984449 7.322946002 7.579194723 6460273 ZntA Metal Resistance Zinc Deinococcus radiodurans R1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 7.608844352 7.718694929 7.350284162 7.697841013 7.294255737 7.363386268 7.42317413 33391363 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.315919377 7.112328147 7.823221828 7.799855563 7.560114586 7.516866619 7.292932947 7.568316922 32447344 catB Organic Remediation Aromatics BTEX and related aromatics Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 7.368595769 7.821866769 7.761798504 7.466052039 7.36905599 7.872273447 7.675481881 7.576044088 8.199843545 84778345 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.270944078 7.359078149 7.458022854 7.214452954 7.534605269 7.877652893 7.719171809 7.733484316 7.589295688 152938364 amoA Nitrogen Nitrification superkingdom:Bacteria; 7.236355615 7.272988436 7.281845235 7.131232402 7.120442467 7.612036952 7.297149555 7.158408421 91682817 PobA Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.390237406 8.139005039 8.670309604 8.938743095 8.964186318 8.874090668 9.079182457 8.415896845 3157738 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 7.038665799 6.986089831 7.086505187 6.690724191 7.101547331 255113794 cda Carbon cycling Carbon degradation Starch Thermoanaerobacter italicus Ab9 7.158883704 7.337801125 7.501715465 6.76955988 6.984216447 7.481705023 7.244687753 7.165114242 7.222294538 116254674 LMO Carbon cycling Carbon degradation Others Rhizobium leguminosarum bv. viciae 3841 7.766207824 7.25093599 7.202439217 6.730419576 7.119056499 7.087265361 7.555200956 157082128 nagK Organic Remediation Aromatics Aromatic carboxylic acid Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 7.827759904 7.175601712 7.757806013 8.346512249 7.781307391 8.801490422 7.617456009 7.691907795 7.331896552 253681654 fnr Stress Oxygen stress Clostridium botulinum D str. 1873 6.968329906 7.080458862 6.808899544 7.376083362 123442334 phoA Stress Phosphate limitation Yersinia enterocolitica subsp. enterocolitica 8081 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 7.306006512 7.13861822 7.476830006 7.207626163 7.591979768 7.35052966 7.391955095 283473467 sigma_24 Stress Sigma factors Xanthomonas albilineans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas; 7.442622973 7.41252156 7.067108881 7.152893488 7.463532286 240265806 amoA Nitrogen Nitrification superkingdom:Bacteria; 7.667145167 7.510454823 7.410063289 78693083 pmdAB Organic Remediation Aromatics Others Bradyrhizobium sp. BTAi1 7.717390687 7.872296494 7.461676324 7.050070081 7.697984059 7.57463401 7.475959281 7.556270533 7.311908372 77454726 arsB Metal Resistance Arsenic Rhodococcus erythropolis PR4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 7.395588746 6.906928085 7.239419932 146402047 glycosyl_transferase_EPS Bioleaching EPS Acidiphilium cryptum JF-5 7.586880567 7.582569168 7.755560686 7.568229211 7.527159008 7.354142496 7.271192857 7.262149115 218172818 sigma_70 Stress Sigma factors Cyanothece sp. PCC 7424 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 6.73025247 7.256333981 6.760571089 7.444426975 6.970554655 6.762414548 217977676 fnr Stress Oxygen stress Methylocella silvestris BL2 7.764553761 7.574622596 7.73349381 7.472020398 7.776064965 7.549218584 7.869182898 115423916 alkK Organic Remediation Others Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 7.186225524 7.647777132 7.256139486 7.189669453 166091405 fnr Stress Oxygen stress Microcystis aeruginosa NIES-843 7.373426658 7.246875538 41019260 BMO Organic Remediation Other Hydrocarbons Brachymonas petroleovorans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Brachymonas; 7.503873894 7.564449497 7.40061658 45386147 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 7.349009865 7.569677568 7.601827416 7.772031092 7.616173107 7.840831028 7.427343891 7.616599162 7.824828373 86284432 linB Organic Remediation Pesticides related compound Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.61373832 7.468890924 7.528472096 7.330719923 7.788344292 7.272004812 78697758 nmoA Organic Remediation Aromatics Nitoaromatics Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.554082386 8.269884104 8.315958988 8.059263351 8.601642508 8.297927053 8.544259524 8.107646411 8.409769634 225868296 nplT Carbon cycling Carbon degradation Starch Streptococcus equi subsp. zooepidemicus 7.420896827 7.270452284 7.335314294 199601644 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.147197673 7.226991753 7.244968176 7.095786285 7.676639638 91200160 hao Nitrogen Nitrification Candidatus Kuenenia stuttgartiensis superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;genus:Candidatus Kuenenia; 7.12950084 7.17255031 6.827570061 7.409602507 7.202148406 7.448000354 7.562014646 154161116 SMR_antibiotics Antibiotic resistance transporter Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 7.424966831 7.466239995 7.726799358 229491479 SMR_antibiotics Antibiotic resistance transporter Rhodococcus erythropolis SK121 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 7.688167745 7.635257838 7.537169989 7.651488241 7.517313591 7.829800504 7.552296176 7.295435379 7.326776965 167465171 perR Stress Oxygen stress Paenibacillus larvae subsp. larvae BRL-230010 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus larvae; 7.53721388 7.197242129 91782252 MFS_antibiotic Antibiotic resistance transporter Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.449206056 7.449655203 7.31771765 260605930 pstB Stress Phosphate limitation Vibrio coralliilyticus ATCC BAA-450 7.185040894 6.87254162 7.193117189 6.958056574 6.807279674 7.350926005 7.116129766 6.899277975 7.019125879 154313065 nitA Organic Remediation Aromatics Other aromatics Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 7.112283874 7.226972414 7.13718244 242782853 ABC_antibiotic_transporter Antibiotic resistance transporter Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 7.540115135 7.422051902 7.074375609 85669625 oxyR Stress Oxygen stress Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.962977406 7.714602945 7.384100505 7.709309695 7.752301927 7.629714613 7.684034416 7.770512564 58427640 katE Stress Oxygen stress Xanthomonas oryzae pv. oryzae KACC10331 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 7.082640178 6.88915997 7.24649097 119767122 Arylest Organic Remediation Aromatics Other aromatics Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 7.504821815 7.394378583 7.403027353 7.525691427 7.119235071 7.474189208 7.105444434 7.53145347 114335935 metC Metal Resistance Mercury Shewanella frigidimarina NCIMB 400 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella frigidimarina; 7.394667829 7.401310727 7.359176902 7.302494002 7.736442342 7.691085055 7.651600917 7.496665532 7.393704683 70606037 superoxide_dismutase Bioleaching Metal Resistance Sulfolobus acidocaldarius DSM 639 7.183293173 7.116984355 6.995458058 6.949713269 148657320 carA Organic Remediation Aromatics Heterocyclic aromatics Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 7.58702791 7.15166473 7.152834741 6.953123642 7.120318492 7.29996103 7.197022675 7.257789686 21223591 P450 Energy process Energy process Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 7.823649946 7.651304834 7.716945834 7.26606654 7.717548843 7.766356241 7.716755393 7.484439794 7.705548147 149370109 sigma_70 Stress Sigma factors unidentified eubacterium SCB49 superkingdom:Bacteria;phylum:Bacteroidetes; 6.937982453 6.931144419 7.083929214 150027844 nagG Organic Remediation Aromatics Aromatic carboxylic acid Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 8.249075009 8.293133517 8.035491513 7.430796759 8.026068843 8.07417988 7.996429606 33632334 fnr Stress Oxygen stress Synechococcus sp. WH 8102 7.725002944 7.844467258 8.063080559 7.736550028 7.708109706 7.977858509 7.931529143 7.924493898 7.941338629 157370604 nmoA Organic Remediation Aromatics Nitoaromatics Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 7.791494086 7.571847975 7.66257603 7.337903466 7.691803826 7.820387148 7.673201322 7.650165147 7.492540362 262309745 ahpF Stress Oxygen stress Acinetobacter lwoffii SH145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter lwoffii; 7.579226605 7.269097174 7.483502911 7.062625215 7.465496618 7.681677354 7.678834903 7.613083048 150032006 glnA Stress Nitrogen limitation Sinorhizobium medicae WSM419 7.645257419 7.401409962 7.57650108 7.045587542 7.424962875 7.65897757 7.405240265 7.32280642 7.364849132 169793358 narG Nitrogen Denitrification uncultured bacterium 7.564429716 7.615515083 7.237764904 7.129794192 7.425612013 7.647803712 7.503363382 7.479722135 7.331392006 258636256 glnA Stress Nitrogen limitation Pantoea sp. At-9b 8.246203082 8.224206063 8.195549351 7.606037886 8.525347071 7.839048739 8.381822685 8.262433273 8.255407578 150866625 AceB Carbon cycling Carbon degradation others Pichia stipitis CBS 6054 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Scheffersomyces;species:Scheffersomyces stipitis; 7.233999213 7.182908122 6.809581553 6.657882772 7.572306733 7.153357346 7.248028467 260579673 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 7.827752349 7.65583049 7.103962827 7.049991776 7.164157224 7.566439013 186686089 tfdA Organic Remediation Aromatics Chlorinated aromatics Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 8.039805555 8.077042116 7.780201186 7.36748779 8.029519855 6.996185939 7.973997458 7.351449249 8.060295426 20142110 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.535638377 7.38062298 7.368395842 7.176127855 7.403812248 7.858216227 7.379400855 7.354122964 7.457857584 187718695 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.589297054 7.351654836 7.484235635 7.975607289 7.717362142 7.427110046 7.686345741 7.877219894 78696397 dmsA Organic Remediation Others Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.447650052 7.140754426 7.270975449 7.32029865 7.466355376 7.756287511 7.302856006 7.418048555 7.606107749 221727337 oxyR Stress Oxygen stress Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.095409134 7.267410518 14027509 ppx Phosphorus Phosphorus utilization Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 8.197403678 7.991763671 7.50075703 7.870731881 7.855135787 8.037276963 7.911072226 7.662455075 7.712793791 17742881 napA Nitrogen Dissimilatory N reduction Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.44173199 8.095151259 7.823281377 8.073970028 7.784894758 7.443413284 7.830513938 7.67958277 3650450 oxyR Stress Oxygen stress Mycobacterium xenopi superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.715575956 7.884085603 7.674400834 7.336927928 8.015417285 7.663359734 7.755612237 7.754582097 7.618956141 110681128 sigma_24 Stress Sigma factors Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 8.042929821 8.033045183 7.927133974 7.678214362 8.464004464 7.944723494 7.92990137 7.848264182 7.688328772 257454953 ahpF Stress Oxygen stress Enhydrobacter aerosaccus SK60 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Enhydrobacter;species:Enhydrobacter aerosaccus; 7.224939787 7.320477114 7.129147055 7.024074961 7.080749661 7.564699353 7.269496716 7.146745172 7.209853872 199584247 CopA Metal Resistance Copper uncultured bacterium superkingdom:Bacteria; 7.810128725 7.850449743 7.562872985 7.556305422 7.742717671 7.95977108 7.579356348 7.324245376 7.301666423 133912605 alkK Organic Remediation Others Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 7.241243092 7.575608857 7.813492693 7.641843583 7.635679287 7.949015238 7.937001229 7.802178664 7.911837728 85069088 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.534582787 7.287407572 7.348475545 7.177149303 7.095753263 7.594145166 7.285621671 7.281676153 7.586536727 209401958 narG Nitrogen Denitrification uncultured bacterium 7.870197493 8.073221658 8.018478116 8.117605826 8.519740806 8.358036375 8.440161928 8.497815873 8.384168284 118035813 phdCI Organic Remediation Aromatics Polycyclic aromatics Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8.024473188 7.796847694 7.760818488 7.878677767 7.917734183 7.746568339 7.909367029 7.949799844 7.695260894 254441274 sigma_70 Stress Sigma factors Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 7.780031186 8.131204595 7.537667872 7.208874708 7.320859841 154148768 gyrB other category gyrB Campylobacter hominis ATCC BAA-381 7.131458523 7.319514727 6.840591074 7.28115559 7.073559318 6.957992717 160915743 ChrA Metal Resistance Chromium Eubacterium dolichum DSM 3991 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichi;order:Erysipelotrichales;family:Erysipelotrichaceae;species:Eubacterium dolichum; 7.369953677 7.087432384 229328746 cap virulence capsule Geobacillus sp. Y412MC52 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.998381469 7.590662264 7.672506231 7.426526976 7.585677661 7.81639645 7.600264039 7.418349085 7.469766185 116634779 narG Nitrogen Denitrification uncultured bacterium 7.321726652 7.67649676 7.056417961 7.526959382 7.917476199 7.567052324 7.520376095 7.547164203 152972969 phn Organic Remediation Herbicides related compound Klebsiella pneumoniae subsp. pneumoniae MGH 78578 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 7.425998646 7.327976372 7.392885381 70730319 glnA Stress Nitrogen limitation Pseudomonas fluorescens Pf-5 7.906562122 7.967162399 7.811740492 7.691487469 7.882062501 7.784668067 8.21503268 7.984724707 8.033504144 153005607 cytochrome Energy process Energy process Anaeromyxobacter sp. Fw109-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 7.53193833 7.490892263 7.403168861 6.972533145 7.104433161 7.276648805 7.193547947 219540953 dmsA Organic Remediation Others Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 7.572221636 7.519938243 7.465532525 7.343672349 7.466599962 7.879167766 7.394255232 7.381950249 7.528700735 157679038 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.357813967 7.193795803 238790365 phoA Stress Phosphate limitation Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 7.768567477 7.56218947 7.449443253 7.406848278 8.052388973 8.152368847 7.772277826 7.708705442 7.70105603 187479171 SMR_antibiotics Antibiotic resistance transporter Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 7.414598902 7.249193291 7.893857687 7.740535917 7.425299518 8.0307034 8.13973054 7.908259081 213951256 pcc Carbon cycling Carbon fixation Corynebacterium amycolatum SK46 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium amycolatum; 7.532420369 7.94210582 8.23405451 7.976838935 8.489403065 8.075756696 8.365938505 8.42538367 8.172287651 156522999 APS_AprA Sulphur adenylylsulfate reductase uncultured bacterium superkingdom:Bacteria; 7.184464578 7.341892073 7.086487052 6.940874686 7.61980284 7.308391263 7.315749559 167350479 amyA Carbon cycling Carbon degradation Starch Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 7.481613833 7.692838272 8.119706584 7.610198012 7.45576339 7.91125522 7.795661707 7.897853162 157377311 cytochrome Energy process Energy process Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 7.781832298 7.560150455 7.225844621 7.021755787 7.915972579 261253366 MFS_antibiotic Antibiotic resistance transporter Vibrio orientalis CIP 102891 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 7.48608937 7.44565171 7.515759589 6.96926062 7.223754874 7.551751921 7.462160806 7.063007815 151563584 fnr Stress Oxygen stress Ochrobactrum anthropi ATCC 49188 8.014692452 7.735853005 7.837180711 7.692468578 7.877948963 8.113772287 8.192726274 7.555944122 256819938 nrfA Nitrogen Dissimilatory N reduction Capnocytophaga ochracea DSM 7271 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga ochracea; 7.176385667 7.065384752 6.997425558 267850581 mnp Carbon cycling Carbon degradation Lignin Phanerochaete chrysosporium 7.752773911 7.849701448 7.925369012 7.888263076 7.970037449 8.271093846 8.093860398 8.109551655 8.105174397 124009118 nifH Nitrogen Nitrogen fixation Microscilla marina ATCC 23134 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Microscilla;species:Microscilla marina; 7.573675132 7.490661874 7.139649818 7.391089001 7.127455398 7.481441364 7.746158597 56314382 pilin virulence pilin Aromatoleum aromaticum EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 7.741361281 7.727965207 7.830184732 7.814792464 7.612410051 7.645845025 73534229 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.367707857 8.264574471 8.243475755 7.637630521 8.440454278 7.906523796 8.153020974 8.488566274 8.027365167 156056022 nagG Organic Remediation Aromatics Aromatic carboxylic acid Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 7.783668232 7.698164976 8.085471829 7.506225709 7.846211316 7.687829203 7.860929252 7.512976522 145961935 oxyR Stress Oxygen stress Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 7.588539645 6.770947876 6.863114475 6.855416668 7.291134238 156527925 ArsC Metal Resistance Arsenic Vibrio harveyi ATCC BAA-1116 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 7.319597949 7.6302028 7.309683631 6.982328966 7.384416022 7.542468864 7.43676661 7.104688458 111075041 pstB Stress Phosphate limitation Heliobacillus mobilis 7.802277292 7.650796038 7.639600561 7.423069908 7.768070923 7.874351435 7.878246995 7.574297362 7.425815167 189916134 dmsA Organic Remediation Others Actinobacillus pleuropneumoniae serovar 7 str. AP76 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus pleuropneumoniae; 7.384687361 7.088674549 6.974647001 6.918881363 7.308841789 154685401 phoA Stress Phosphate limitation Bacillus amyloliquefaciens FZB42 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 7.465277983 7.234641721 7.370459348 7.137510396 7.402681643 7.494367972 149918855 hrcA Stress Heat shock Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 7.710543291 7.849273428 7.522220354 7.838550667 8.235203568 8.10653363 8.007854455 8.114757017 85375255 pimF Organic Remediation Aromatics Aromatic carboxylic acid Erythrobacter litoralis HTCC2594 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 7.545197947 7.654300704 7.473693829 7.359512554 7.325744591 7.909414438 7.489990391 7.341360466 7.012568335 228811973 narI Stress Oxygen limitation Bacillus thuringiensis serovar monterrey BGSC 4AJ1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus thuringiensis; 7.106508198 6.886353363 6.616137185 7.254704685 157315865 dmsA Organic Remediation Others Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 7.6941514 7.620595226 7.135345896 7.114335064 7.60928826 7.670728372 7.520740296 7.224913321 7.526553823 261410495 initiator_protein__theta_replication Bacteria phage REPLICATION Aggregatibacter phage S1249 order:Caudovirales;family:Myoviridae; 7.116413182 7.11775573 7.228572273 6.988321002 7.106512153 119963949 nmoA Organic Remediation Aromatics Nitoaromatics Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 7.503697256 7.551359291 7.280166517 7.34972751 7.233524207 7.819179651 7.359033094 7.26288083 7.346304754 207087496 sigma_32 Stress Sigma factors beta proteobacterium KB13 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 6.926514992 7.109101119 7.145254508 6.92672642 7.501891296 162955397 clpC Stress Protein stress Renibacterium salmoninarum ATCC 33209 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Renibacterium;species:Renibacterium salmoninarum; 8.257822805 8.199556523 7.723347929 7.990287767 8.40698088 8.202574146 8.468199322 8.447445675 8.445950831 171283198 clpC Stress Protein stress Streptococcus infantarius subsp. infantarius ATCC BAA-102 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus infantarius; 7.429710841 7.566486941 7.351428051 7.586165788 7.382023797 7.382422054 7.462984932 7.356807829 91794368 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Shewanella denitrificans OS217 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella denitrificans; 7.196555492 7.242651653 7.393931634 7.003033972 7.113544204 7.479030148 7.124673468 7.483364789 227494690 obgE Stress Radiation stress Actinomyces coleocanis DSM 15436 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces coleocanis; 7.122197575 6.782224604 7.05699433 6.700626756 6.605695569 7.649302646 6.997331673 7.437231071 220903834 cytochrome Energy process Energy process Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 7.96750196 8.036575578 8.049296296 7.426876324 7.707815777 7.910748881 8.154403619 7.826466838 87198882 pimF Organic Remediation Aromatics Aromatic carboxylic acid Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 7.462659306 7.539389515 7.523019739 7.235703686 7.172445146 7.50328081 7.300972242 7.647911883 83572726 atzA Organic Remediation Herbicides related compound Moorella thermoacetica ATCC 39073 7.366196555 7.232377405 7.448203113 7.02208735 7.013762074 7.234487775 7.344629293 78065344 cap virulence capsule Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.536669436 8.487529164 8.360888992 7.770641245 8.452084305 8.05685847 8.167820461 8.296748542 126664596 pstB Stress Phosphate limitation Marinobacter sp. ELB17 7.485430074 7.497543309 7.33740184 7.479559094 7.414012514 7.525370264 6.890283109 7.434500292 257799480 fnr Stress Oxygen stress Enterococcus casseliflavus EC30 7.120846449 7.335754416 220683726 mcrA Carbon cycling Methane Methane production uncultured archaeon superkingdom:Archaea; 7.574548304 7.155772206 262404300 iuc virulence aerobactin Vibrio sp. RC586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.033526322 7.093204638 7.338179971 6.907497811 6.744604979 7.368852824 7.480284204 62148188 gyrB other category gyrB Chlamydophila abortus S26/3 superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Chlamydiaceae;genus:Chlamydophila;species:Chlamydophila abortus; 7.3212613 7.486968461 7.296659369 7.42795663 7.302927805 7.425726456 62318457 F1F0_ATP_synthase Bioleaching other category Acidithiobacillus ferrooxidans 7.750054392 7.723688963 7.826808574 7.162480456 7.80470292 7.702315224 7.813577539 7.76706994 7.378426884 53850119 sox Sulphur Sulphur oxidation Pseudaminobacter salicylatoxidans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Pseudaminobacter; 7.875472228 8.492084048 7.67869688 7.577744653 8.389387265 8.221286037 7.936871152 7.893861161 251845694 mannanase Carbon cycling Carbon degradation Hemicellulose Paenibacillus sp. oral taxon 786 str. D14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 7.45085425 6.948920459 7.450856938 7.084725711 7.096461661 7.384288112 7.090291984 7.187896734 262040730 iro virulence Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 7.489324791 7.660696129 7.518602807 7.185113486 227069671 NiR Nitrogen Assimilatory N reduction uncultured archaeon 7.829612766 7.77742969 7.525442553 7.444337859 7.53881858 7.441180999 7.736442762 7.589543463 7.613467282 41058921 chnC Organic Remediation Other Hydrocarbons Brachymonas petroleovorans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Brachymonas; 7.692042473 7.678818295 7.405687716 7.659304543 7.375090795 7.843902416 7.207618843 7.663798575 7.085651014 260654979 obgE Stress Radiation stress Jonquetella anthropi E3_33 E1 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Jonquetella;species:Jonquetella anthropi; 7.50067183 7.457707082 7.367255372 7.739451516 7.432844292 7.634902182 7.326553742 7.257177944 7.394189602 256831260 gyrB other category gyrB Jonesia denitrificans DSM 20603 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 7.883049242 7.554557917 7.535756318 7.651406686 7.566786046 7.750215597 7.764685506 7.695416519 7.376241285 85823690 Catechol Organic Remediation Aromatics Other aromatics Roseobacter sp. MED193 7.530824885 7.459100147 7.680849012 7.532408662 7.098830467 7.866999176 7.55035555 7.516091826 7.599760027 241662085 pilin virulence pilin Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 7.663911922 7.629199038 7.485418222 7.610318777 7.498377647 7.55757398 227339524 type_III_secretion virulence secretion Rhizobium sp. NGR234 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 7.725853905 7.672319201 7.642719925 7.777643756 7.64671692 7.958004768 29293194 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.591894122 7.511733856 7.462844644 7.550870647 7.282354336 7.606597846 144900225 phoB Stress Phosphate limitation Magnetospirillum gryphiswaldense MSR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 8.035572961 7.962825348 7.783800108 8.332194017 8.124408316 8.144874435 8.405284289 8.637553979 8.182918602 108763297 ZntA Metal Resistance Zinc Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 8.37400983 8.205803631 8.253374217 7.696018067 8.210932234 8.09453523 7.873849403 8.190013746 7.846541552 226243188 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 8.574363157 8.216996851 7.856683814 8.391220614 8.513008137 8.120891613 8.354725981 189340375 dsrA Sulphur sulfite reductase Chlorobium limicola DSM 245 7.216621334 7.762861483 7.39073018 6.816352856 7.501376676 7.387647925 7.781689148 7.677936495 7.516089533 260635772 obgE Stress Radiation stress Prevotella sp. oral taxon 472 str. F0295 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella sp. oral taxon 472; 7.162048463 7.336555676 7.406118659 7.710920897 7.153833817 7.364239527 7.234595603 167033432 Mex Antibiotic resistance transporter Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.384161388 7.1367786 7.084273021 7.165409159 7.335685817 189916157 cap virulence capsule Actinobacillus pleuropneumoniae serovar 7 str. AP76 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus pleuropneumoniae; 7.463692489 7.34276742 7.35015458 7.510857487 7.358850986 7.460235199 227346827 opuE Stress Osmotic stress Corynebacterium pseudogenitalium ATCC 33035 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium pseudogenitalium; 7.884578473 7.801520585 7.696276099 7.240124314 7.808676241 7.583492817 7.508237737 7.639409944 7.62443454 227864558 SMR_antibiotics Antibiotic resistance transporter Lactobacillus ultunensis DSM 16047 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus ultunensis; 7.157012687 7.282380459 121536059 nrfA Nitrogen Dissimilatory N reduction Thermosinus carboxydivorans Nor1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Thermosinus;species:Thermosinus carboxydivorans; 7.993656731 7.951121082 7.713643222 7.662595735 8.193801821 8.10884147 7.820067527 7.528590983 7.835296211 211958174 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 7.30996575 7.420696388 7.387642733 225874024 sigma_70 Stress Sigma factors Acidobacterium capsulatum ATCC 51196 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteria;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 7.291428677 7.127397813 7.042640891 6.912598222 6.991979886 115524918 pcc Carbon cycling Carbon fixation Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.661730248 7.863846105 7.920215685 8.38986762 8.066188344 8.084513384 7.821310815 8.102215503 8.270202217 111224482 alkK Organic Remediation Others Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 8.236525857 8.195790585 7.933695785 7.904266118 7.927149106 8.081568272 7.680726266 8.013828548 7.476390447 71383864 nasA Nitrogen Assimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.300851903 7.636070798 7.922005686 8.085825743 7.687584687 8.063278893 7.754422474 7.605476601 8.000235878 160931606 pcc Carbon cycling Carbon fixation Clostridium leptum DSM 753 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 7.406728157 7.248404782 7.373457186 7.195175946 7.653940366 7.786889019 7.980319317 7.262603869 7.410793588 251730476 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.321364406 7.333551046 7.056413943 6.982999299 6.866290407 7.441333481 268162257 pstC Stress Phosphate limitation Photobacterium damselae subsp. damselae CIP 102761 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium damselae; 8.022037204 7.556610156 8.175209497 7.662077681 8.102068149 7.99742822 7.819339973 7.971801115 8.020452102 157846793 ArsC Metal Resistance Arsenic Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 7.51519459 7.286314827 7.380026075 6.880405322 6.936893901 7.532528138 7.344450801 6.967626634 7.207949402 212635426 AceA Carbon cycling Carbon degradation others Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 7.875167994 7.76975724 7.377909884 7.393720374 7.648890536 14027655 MFS_antibiotic Antibiotic resistance transporter Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 7.649850308 7.476371015 7.838664292 7.479473826 7.77841671 7.840967549 7.373151561 7.954545817 145233267 CopA Metal Resistance Copper Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.740672922 7.539195949 7.514982249 7.350203377 7.3053208 7.55522959 7.47008304 7.556160001 206687750 CopA Metal Resistance Copper Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.595713499 7.625335837 7.616245271 7.430031055 7.677343295 7.866073738 7.892389205 7.692009376 7.734989758 258544903 pilin virulence pilin Cardiobacterium hominis ATCC 15826 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Cardiobacteriales;family:Cardiobacteriaceae;genus:Cardiobacterium;species:Cardiobacterium hominis; 7.463600669 7.349370455 7.621873377 78364483 SilA Metal Resistance Silver Thiomicrospira crunogena XCL-2 7.590181482 7.06933119 218750978 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.569747789 7.117975942 7.296934773 7.239679666 7.378686919 7.490423246 240168516 proW Stress Osmotic stress Mycobacterium kansasii ATCC 12478 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 8.190791661 8.065911265 7.249337242 8.13900277 7.880129902 7.886796605 7.674218455 227312250 katE Stress Oxygen stress Denitrovibrio acetiphilus DSM 12809 superkingdom:Bacteria;phylum:Deferribacteres;class:Deferribacteres;order:Deferribacterales;family:Deferribacteraceae;genus:Denitrovibrio;species:Denitrovibrio acetiphilus; 7.607931938 7.228843687 7.172090715 12407235 aclB Carbon cycling Carbon fixation Chlorobium limicola superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium; 7.117780321 7.237139562 7.185433143 6.948270046 7.633654254 7.293616032 7.033820343 7.338792666 11344601 narG Nitrogen Denitrification Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.560287577 7.723163681 7.839999705 7.661567849 7.53653884 7.891724894 7.348591781 7.93905146 7.511727132 24349154 iro virulence Shewanella oneidensis MR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella oneidensis; 7.229159422 7.095417925 7.49591121 7.109313018 7.4872538 7.862874632 7.63101603 7.581379501 229312686 perR Stress Oxygen stress Listeria grayi DSM 20601 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria grayi; 6.829627133 7.014819328 7.161879558 6.658504037 7.198085092 7.397014205 7.188627949 7.313068604 7.273665817 145235731 mhpA Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.301430062 6.970290031 157404590 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.523871368 7.323441487 7.244206672 7.052268691 7.10473799 148254095 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.578766976 8.534852238 8.365338947 8.40780319 8.465018206 8.125540314 8.501217174 8.50359151 8.276948018 197332666 bclA Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7.259889373 7.233243374 7.397383251 7.18357137 7.164619107 7.271796087 7.780406653 94219774 ppk Phosphorus Phosphorus utilization Baumannia cicadellinicola str. Hc (Homalodisca coagulata) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:Candidatus Baumannia cicadellinicola; 7.063695804 7.211229131 7.113777593 124488205 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.573659688 7.76756302 7.726992424 7.363493793 7.490196243 7.914330168 7.628399819 7.849449421 6.99681968 229331868 ahpF Stress Oxygen stress Geobacillus sp. Y412MC52 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.233599125 7.321645362 7.274131495 7.686606197 7.433872372 118579054 cap virulence capsule Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 7.383115359 7.446781449 7.806021085 7.411486553 7.766276703 7.381576737 7.826339804 118054022 ChnA Organic Remediation Other Hydrocarbons Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.235112536 8.001444666 7.839984889 7.974731508 8.279289728 8.219824231 8.196309077 8.594003949 157316469 obgE Stress Radiation stress Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 7.593369179 7.702690729 7.487805896 7.129946034 7.544267647 112462919 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.132889143 7.797961391 7.716384279 7.065791565 7.627220106 7.800533191 7.678562119 7.679349557 118617138 CadA Metal Resistance Cadmium Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 7.497905 7.144954505 7.398788503 7.780168947 7.239245887 7.163090776 7.47564963 10441629 xylF Organic Remediation Aromatics BTEX and related aromatics Comamonas sp. JS765 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 7.18943487 7.745029955 7.912538515 7.874386447 7.634579967 8.14088728 7.744849461 7.675974701 7.733671891 167645314 pimF Organic Remediation Aromatics Aromatic carboxylic acid Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 7.099854092 7.518132914 7.450074588 7.773719153 7.392040743 7.378337222 7.345627968 7.459034529 167770574 sigma_24 Stress Sigma factors Anaerotruncus colihominis DSM 17241 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Anaerotruncus;species:Anaerotruncus colihominis; 7.465487096 7.491171232 7.287291429 7.049976069 7.483985323 7.823204793 7.301426438 7.297336365 156860199 pcc Carbon cycling Carbon fixation Bacteroides uniformis ATCC 8492 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides uniformis; 7.439449068 7.370510153 7.902565181 7.698511202 7.399064976 8.096360764 7.978737607 7.764050188 58261698 phenol_oxidase Carbon cycling Carbon degradation Lignin Cryptococcus neoformans var. neoformans JEC21 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Tremellomycetes;order:Tremellales;family:Tremellaceae;genus:Filobasidiella;species:Filobasidiella neoformans; 7.530545885 7.573847974 7.462728883 7.157139234 7.722919226 7.804736776 7.653066439 7.403854652 7.440453444 84516450 glnA Stress Nitrogen limitation Loktanella vestfoldensis SKA53 7.50178657 7.499425966 7.941375487 7.646612843 8.251556519 8.03678953 7.813572421 7.637150153 152970132 dmsA Organic Remediation Others Klebsiella pneumoniae subsp. pneumoniae MGH 78578 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 8.154970516 8.080182001 8.157220571 7.896652746 8.388069862 8.084706422 8.260788006 7.972537984 8.312481176 154620 nplT Carbon cycling Carbon degradation Starch 7.03978037 7.016174923 7.248168337 84513558 ZntA Metal Resistance Zinc Prochlorococcus marinus str. MIT 9211 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 7.595376454 7.434912466 7.563636509 7.302122743 7.505055177 7.588451362 7.952269341 7.24534111 39982578 SMR_antibiotics Antibiotic resistance transporter Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 7.966595128 8.668185487 8.207332219 7.73948296 8.30071793 8.11813592 8.055054829 8.344010631 70780022 GroES Stress Heat shock Streptococcus ratti superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 7.432842654 7.095345798 6.940389191 7.104300603 7.453539211 7.142299046 7.079686588 7.448909023 3157606 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 7.80967513 7.738426872 7.582631412 7.607070575 8.144800145 7.946217273 8.029788267 7.709119917 7.764782496 23393003 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.25629013 7.011404832 6.721905901 7.29150529 111018516 limEH Carbon cycling Carbon degradation Others Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7.275429503 7.648523494 7.080692485 7.209143331 8.028608667 7.165124025 6.933222961 7.179312994 226324578 sigma_70 Stress Sigma factors Coprococcus comes ATCC 27758 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Coprococcus;species:Coprococcus comes; 7.123422359 6.901867055 7328118 B_lactamase_C Antibiotic resistance Beta-lactamases Klebsiella pneumoniae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella; 7.479594544 7.708515551 7.086169798 7.715906925 7.876738073 7.290553236 7.614698651 71555891 nmoA Organic Remediation Aromatics Nitoaromatics Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 7.428322434 7.313712443 7.21385046 7.219748653 7.479108074 7.743745972 7.568683999 7.373109643 7.751194478 145319785 pilin virulence pilin Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 7.330073553 7.413821488 7.199119602 6.946543134 7.103644191 7.236293068 7.220163332 7.19138019 7.041381201 28542659 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.400903073 7.323878679 7.249150657 6.907154468 7.655173932 7.339550105 7.386541442 4239911 pheA Organic Remediation Aromatics Other aromatics Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.105440257 8.010582884 8.000486264 7.940297842 8.192686361 8.138287668 8.139693801 7.986852408 159897545 AceB Carbon cycling Carbon degradation others Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 7.418190856 7.278765212 7.08946415 6.982714469 7.010593156 7.735715909 7.363809171 7.434228179 225091196 pstB Stress Phosphate limitation Clostridium sp. M62/1 7.702285633 7.623638557 7.652886874 6.977952494 7.656206435 7.669792604 7.676890805 7.819723972 218718484 MFS_antibiotic Antibiotic resistance transporter Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 7.273814914 6.844483271 7.279591845 7.07854798 7.158806482 257778087 pstA Stress Phosphate limitation Desulfotomaculum acetoxidans DSM 771 7.665744811 7.785822496 7.510054111 7.41569051 8.014035797 8.00076844 7.662190533 7.534030321 7.948163244 149921613 sigma_24 Stress Sigma factors Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 7.371517498 7.745272059 7.754585999 7.657550343 7.820958884 7.603335215 7.735156609 7.675541127 86139497 pcaG Organic Remediation Aromatics Other aromatics Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.270994476 7.316960544 7.20872838 7.05229992 7.548530111 7.718507924 7.629355692 7.497529581 124267140 fnr Stress Oxygen stress Methylibium petroleiphilum PM1 7.929371547 7.526024424 7.056511313 7.785159873 7.954370229 7.54967543 7.84741635 217415094 ppx Phosphorus Phosphorus utilization Bifidobacterium angulatum DSM 20098 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium angulatum; 8.02992973 7.839588117 7.894970455 7.463672264 8.133553249 7.593907349 7.876206741 7.62657694 113932135 xylanase Carbon cycling Carbon degradation Hemicellulose Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 7.986753048 8.104001112 7.451556348 8.17169337 8.410880985 8.149041081 8.445618689 8.365065264 8.580876698 74421307 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nitrobacter winogradskyi Nb-255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 8.345107919 8.148779383 7.900555213 8.067356269 8.306250599 8.306318655 8.271395318 8.362304701 8.283028876 70982915 tfdA Organic Remediation Aromatics Chlorinated aromatics Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 7.841822497 8.118502628 7.932983471 7.382317759 7.943989702 7.46758128 7.537924613 8.043571418 229468880 gyrB other category gyrB Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 7.612076103 7.439231116 7.404786937 7.395007791 7.69228625 7.764279172 7.481411909 7.525404318 7.641874432 93277208 gyrB other category gyrB Streptomyces sp. MC3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7.984831287 8.017734913 8.057589542 7.714953624 8.28348547 7.93857922 8.296837513 89362174 alkK Organic Remediation Others Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 7.600923068 7.938786972 8.167761843 8.014450451 7.469019332 29652422 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.179204558 7.193790301 7.654764867 7.361700184 7.182499418 7.439315284 7.123366487 29339045 ChrA Metal Resistance Chromium Bacteroides thetaiotaomicron VPI-5482 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides thetaiotaomicron; 7.181321796 7.264833335 212633170 glnA Stress Nitrogen limitation Shewanella piezotolerans WP3 6.74717808 7.278728962 221572676 pstB Stress Phosphate limitation Thermotoga neapolitana DSM 4359 7.242855754 7.254230639 7.653446896 7.098515152 7.323144321 7.389172525 156523557 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 7.318513442 7.388783992 7.629256719 7.704802448 7.448787211 7.927335405 7.479086373 7.442253469 7.563016883 119186299 tftH Organic Remediation Aromatics Chlorinated aromatics Coccidioides immitis RS 7.111942404 7.029395014 7.095660811 6.900074364 7.211355445 241866432 oxyR Stress Oxygen stress Sphingobacterium spiritivorum ATCC 33861 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium;species:Sphingobacterium spiritivorum; 7.234547684 7.263776743 7.028935371 37680962 pilin virulence pilin Vibrio vulnificus YJ016 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 7.60404686 7.399858433 7.58224582 6.975744428 7.188159657 7.5819093 7.415202599 7.218557016 7.724470698 91688785 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.016279415 7.998881152 7.4761279 7.747474186 8.105374186 8.164335082 7.8631964 7.678526086 8.076826056 112441864 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 7.57405858 7.323903789 7.392352805 7.270332138 7.01038204 7.704753844 7.02878856 7.519839302 7.25612303 52308335 sigma_24 Stress Sigma factors Mannheimia succiniciproducens MBEL55E superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Basfia;species:Mannheimia succiniciproducens; 7.984174379 7.99639019 7.933054939 171059453 fnr Stress Oxygen stress Leptothrix cholodnii SP-6 7.089164632 7.518431314 7.463184723 7.320476752 7.33361387 148257300 iro virulence Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.32695732 7.728414636 8.032061191 8.163399393 8.04468283 7.980014058 76556536 pimF Organic Remediation Aromatics Aromatic carboxylic acid Natronomonas pharaonis DSM 2160 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natronomonas;species:Natronomonas pharaonis; 7.210534013 7.253202509 7.395750009 7.580894477 7.535768017 7.681985037 7.475965958 7.568447228 196190938 obgE Stress Radiation stress Synechococcus sp. PCC 7335 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.379080887 7.545078845 7.396357434 7.064973881 7.482987277 7.641439158 7.468642597 7.151892283 7.539978408 108801671 bphD Organic Remediation Aromatics Polycyclic aromatics Mycobacterium sp. MCS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.330167922 7.499000205 7.453899865 7.056359705 7.799109322 397886 bphD Organic Remediation Aromatics Polycyclic aromatics Pseudomonas sp. superkingdom:Bacteria;phylum:Proteobacteria; 7.592723655 7.505498054 7.251549023 7.852874489 7.65623354 7.52839959 225199057 hrcA Stress Heat shock Desulfonatronospira thiodismutans ASO3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfonatronospira;species:Desulfonatronospira thiodismutans; 7.521845712 7.185165218 7.183633873 7.09401131 7.259035415 7.486339266 262184280 ahpC Stress Oxygen stress Corynebacterium aurimucosum ATCC 700975 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium aurimucosum; 7.600576428 7.431027188 7.335976174 7.364683967 7.353089442 7.645979917 7.406999136 7.376262551 7.250860223 71850978 obgE Stress Radiation stress Mycoplasma synoviae 53 superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Mycoplasmatales;family:Mycoplasmataceae;genus:Mycoplasma;species:Mycoplasma synoviae; 7.078056337 7.080193736 6.916765298 2822265 bphA Organic Remediation Aromatics Polycyclic aromatics Pseudomonas putida 7.101711312 7.236297613 6.687228796 7.613414101 6.828373339 6.904314818 283438131 obgE Stress Radiation stress Pirellula staleyi DSM 6068 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Pirellula;species:Pirellula staleyi; 7.604265868 8.059729692 8.27540711 7.710728795 8.495008348 7.562648888 7.699291193 260613249 amyA Carbon cycling Carbon degradation Starch Vibrio metschnikovii CIP 69.14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio metschnikovii; 7.265924689 7.370464344 7.492244935 7.650633632 7.179952319 7.637013345 7.282145446 7.365493411 7.417101685 223644807 ahpC Stress Oxygen stress Candida dubliniensis CD36 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;genus:Candida;species:Candida dubliniensis; 7.24966293 6.825169684 7.126761116 227543078 katA Stress Oxygen stress Corynebacterium glucuronolyticum ATCC 51866 7.241503084 7.288830434 7.113034923 6.944978247 6.869472613 7.389195885 239910444 pstB Stress Phosphate limitation Thermococcus gammatolerans EJ3 6.900041551 6.994345741 7.3578326 148653850 alkB Organic Remediation Other Hydrocarbons Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 8.022568533 8.16978985 8.212704106 7.827985141 8.675118334 8.207587737 8.208457899 7.771236643 255277630 glnA Stress Nitrogen limitation Geobacillus sp. Y4.1MC1 7.466959759 7.812228709 7.763311033 7.605655972 7.319547797 7.81888981 7.654661772 7.808414035 114796496 glnR Stress Nitrogen limitation Halobacillus halophilus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Halobacillus; 7.731593468 7.767037616 7.57571257 7.299910461 7.443307469 7.641984813 7.187947376 7.480693215 282885918 sigma_24 Stress Sigma factors Burkholderia sp. CCGE1001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.629008925 7.728291645 7.893167806 7.99867099 7.911452316 7.460977362 7.757059812 7.692364399 151939148 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.187690287 7.279144629 6.920385126 6.782569428 7.596626588 182411887 exaA Organic Remediation Chlorinated solvents Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 7.549507309 7.560363492 7.284745462 7.2894104 7.837066309 7.788575341 7.554382802 7.703029962 151102 bphB Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.085163903 7.502323849 70733517 gyrB other category gyrB Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.564689342 7.857425774 7.890563836 8.143980918 8.08736302 7.813380984 8.169973692 7.921958796 7.894336074 113941658 endochitinase Carbon cycling Carbon degradation Chitin Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 7.468996424 7.284493487 7.577037343 83591120 glnA Stress Nitrogen limitation Moorella thermoacetica ATCC 39073 7.317957388 7.437352845 7.159805353 6.630379634 7.303268592 189501303 amyA Carbon cycling Carbon degradation Starch Chlorobium phaeobacteroides BS1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 7.911730607 7.838642669 7.655407034 7.25889237 8.131735206 7.759480874 7.713231658 7.895369715 7.946593845 119387675 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.517938279 7.661498044 7.603316052 8.008712828 8.168566921 8.03663926 7.722908939 7.529175273 92906880 TerC Metal Resistance Tellurium Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.460829598 8.401836483 8.220361184 8.611992444 8.359047556 8.478140954 8.28337057 8.304296329 8.3930794 149174169 nitro Organic Remediation Others Planctomyces maris DSM 8797 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces maris; 7.562115856 7.60134407 260614978 pstB Stress Phosphate limitation Vibrio furnissii CIP 102972 6.873275345 7.204514582 7.315984166 6.75334146 7.023232876 7.586402172 7.025531905 7.015777383 7.164947848 1255480 nifH Nitrogen Nitrogen fixation unidentified bacterium superkingdom:Bacteria; 7.11575176 6.889375463 110819516 Catechol Organic Remediation Aromatics Other aromatics Rhodococcus sp. RHA1 7.969332974 7.959499225 7.799022536 8.500736523 8.222640158 8.339388705 8.360309945 19909645 gyrB other category gyrB Spirillum pleomorphum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Spirillaceae;genus:Spirillum; 8.070377528 7.673620566 7.626037958 7.708385546 7.523539444 7.876232917 7.834527279 7.559922856 7.339935278 253989401 MATE_antibiotic Antibiotic resistance transporter Photorhabdus asymbiotica superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus; 7.606808144 7.8271504 7.921465365 8.042730329 7.866202195 7.373982571 7.586988994 83950005 sigma_32 Stress Sigma factors Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 7.141548389 7.158153693 7.437905494 192360165 gyrB other category gyrB Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 7.68630898 7.480749641 7.64122116 7.495471211 7.391488803 8.022699885 7.364216898 7.409091491 7.495364968 169803644 ahpF Stress Oxygen stress Leuconostoc citreum KM20 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc citreum; 7.041167355 6.935633656 157404688 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.661241615 7.232978154 6.984464043 7.176400042 7.744504519 7.130134993 7.210542065 150401001 pstA Stress Phosphate limitation Methanococcus aeolicus Nankai-3 7.32853505 7.140134177 6.564083061 7.486012753 156235617 AceB Carbon cycling Carbon degradation others Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 8.35529057 8.169266618 7.995943391 8.035672136 8.55845644 8.36863481 8.414671654 8.361400154 8.269951928 6448583 vip virulence virulence protein Klebsiella pneumoniae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella; 7.779470467 7.766777521 8.18357387 8.111333974 8.233711456 7.78506932 7.8000657 7.535768874 213957806 glnA Stress Nitrogen limitation Propionibacterium acnes SK137 6.94470332 7.238464377 6.751321262 6.872109724 7.54700917 109897448 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 7.293818022 7.250073713 7.037280314 6.949717608 7.504031361 7.318416531 7.122617036 7.133339391 15791249 pstB Stress Phosphate limitation Halobacterium sp. NRC-1 7.815117431 7.748733657 7.435641171 7.992908965 7.894263481 7.29020414 7.569147942 196226734 pstA Stress Phosphate limitation Chthoniobacter flavus Ellin428 8.025132464 8.11256796 7.875488174 7.745975566 7.637637132 7.545210477 7.684704841 7.586022413 111066142 glx Carbon cycling Carbon degradation Lignin Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 7.190206556 7.412778679 7.399503107 7.456498847 7.276674429 7.465434355 7.863178062 7.675907607 7.666641961 105892248 alkB Organic Remediation Other Hydrocarbons Burkholderia cenocepacia AU 1054 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 7.229001909 7.393842796 7.245582531 7.371880135 7.871391564 7.212866311 7.270511852 7.50657512 87306739 SMR_antibiotics Antibiotic resistance transporter Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 7.551163141 7.44090622 7.594067638 6.659546308 7.476602332 7.1814045 7.043425771 108758596 amyA Carbon cycling Carbon degradation Starch Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 7.522883228 7.330696714 7.125081954 7.241420681 160428843 atzA Organic Remediation Herbicides related compound Clostridium phytofermentans ISDg superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium phytofermentans; 7.190820962 7.134613676 219946825 ChrA Metal Resistance Chromium Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 7.972259156 7.993038718 7.686354037 7.196387915 7.747408035 7.604865861 7.493065173 7.6114874 7.381597508 218324023 hly virulence hemolysin Vibrio splendidus LGP32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 7.815383452 7.592325507 111148956 alkB Organic Remediation Other Hydrocarbons Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 7.619304661 7.567713823 7.685920286 8.006042437 8.444394594 8.770484044 8.106407863 7.717279458 7.877931853 3243171 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas sp. CB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 7.685386118 7.686207328 7.390525949 7.354250702 7.034964398 7.609191396 7.148733374 7.434714407 151302198 APS_AprA Sulphur adenylylsulfate reductase Desulfonauticus autotrophicus 7.174132194 6.970200134 90435144 pcc Carbon cycling Carbon fixation Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 7.366067667 7.14524481 84043091 Catechol Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 7.845273802 7.657731957 7.867871129 7.216172676 8.014478537 170087766 CopA Metal Resistance Copper Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 7.306815303 7.450789783 7.126977211 7.172523806 7.169232623 7.364818694 193222342 sigma_70 Stress Sigma factors Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 7.199666444 7.473540677 7.41427207 7.428101839 7.602546495 7.718006751 117985607 CadA Metal Resistance Cadmium Burkholderia phymatum STM815 7.384974952 7.275676733 7.127059692 7.104836779 7.744428034 7.851881218 7.57053408 7.619066066 7.577943268 86145565 pstB Stress Phosphate limitation Vibrio sp. MED222 7.471301977 7.292668999 7.193556492 7.347263111 7.640907443 7.028519459 7.272958111 40736909 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.117981083 6.997906912 212661618 bco Organic Remediation Aromatics Aromatic carboxylic acid Bifidobacterium catenulatum DSM 16992 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium catenulatum; 7.644957231 7.599019168 7.363827717 7.543112502 7.118242036 7.833981341 218679662 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium etli CIAT 894 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.280287026 7.594952734 7.839299015 7.359366861 7.324487446 7.398867629 156446877 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.090756414 7.005300657 7.096403287 6.781649401 6.491568464 7.429703901 6.79113344 6.648089779 72396549 merP Metal Resistance Mercury Methanosarcina barkeri str. fusaro superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina barkeri; 7.154833991 7.174981091 7.101375364 6.751574705 7.387007873 6.973403842 6.962098964 7.28395981 91071354 ZitB Metal Resistance Zinc Escherichia coli UTI89 7.432399235 7.414329268 7.158540776 7.280075453 7.170207397 53791231 mnp Carbon cycling Carbon degradation Lignin Trametes cervina 7.659232648 7.5037056 7.715552496 7.40656041 7.74658541 8.0558671 7.62128945 7.296148672 7.581433732 157939384 iro virulence Burkholderia pseudomallei Pasteur 52237 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 7.868390091 7.681624478 7.731119339 8.029081793 7.630205812 8.109566975 7.798843606 8.078002126 170769934 AceB Carbon cycling Carbon degradation others Escherichia albertii TW07627 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 7.274613609 7.200467783 6.861510761 7.473367312 227822127 Tet Antibiotic resistance other Rhizobium sp. NGR234 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 7.831774032 7.798921851 7.76691173 7.500356263 7.999698018 8.064835184 7.950593806 7.34581466 7.941461242 150021692 pstB Stress Phosphate limitation Thermosipho melanesiensis BI429 7.193548191 6.903902993 6.595484377 7.170227453 59712674 sigma_38 Stress Sigma factors Vibrio fischeri ES114 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Vibrio fischeri; 7.770565242 7.527063766 7.487179452 7.299373412 7.12718332 7.507668724 7.581599922 7.417567519 7.593290676 4981052 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Thermotoga maritima MSB8 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga;species:Thermotoga maritima; 7.624266136 7.764264621 7.973679175 8.455205382 8.367471994 8.49585184 8.411951021 8.256377653 27358234 endochitinase Carbon cycling Carbon degradation Chitin Vibrio vulnificus CMCP6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 7.516703727 7.737047431 7.667615244 7.182302626 7.22419004 7.797657882 7.546312075 7.444929489 7.558479328 118736916 ureC Nitrogen Ammonification Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 7.392367084 7.894976186 7.716463888 7.668162658 7.42304664 8.073108429 7.194503611 7.408848838 7.445010447 10173299 SMR_antibiotics Antibiotic resistance transporter Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 7.347298558 7.344161336 7.669918473 7.670692445 7.291487794 7.517942013 7.658834243 7.978463052 7.8193652 2635963 SMR_antibiotics Antibiotic resistance transporter Bacillus subtilis subsp. subtilis str. 168 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 8.239442035 8.147320606 8.215248204 7.622084961 8.555561406 7.741216922 7.94361978 8.213888386 7.951957968 57242283 phoB Stress Phosphate limitation Campylobacter upsaliensis RM3195 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter upsaliensis; 7.359372478 7.152323295 7.316358139 14027021 alkK Organic Remediation Others Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 7.302295146 6.872761177 7.19357481 6.851517624 6.623928006 7.264824085 7.07465342 7.442364205 83837256 pcc Carbon cycling Carbon fixation Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 7.48411999 7.870132903 7.534829742 7.399494349 7.865690668 7.769093852 7.861950818 154274764 endochitinase Carbon cycling Carbon degradation Chitin Ajellomyces capsulatus NAm1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 7.112741923 7.235868747 7.210137393 7.498514253 161159688 ppk Phosphorus Phosphorus utilization Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 7.50312253 7.336562004 6.983744398 7.179078892 7.277332499 7.789293037 7.193528254 7.112837093 161786721 ZitB Metal Resistance Zinc Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 7.520736283 7.436571397 7.383024415 7.033460606 6.856224055 7.625183472 7.174539097 6.800140638 15788869 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.461916953 7.303415969 7.483669152 6.989161861 7.20402705 7.602187981 7.694231044 7.434320186 7.511336274 184192186 sigma_38 Stress Sigma factors Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.13856636 7.805685104 7.701333023 7.423636139 7.768357566 8.147337482 7.908237386 7.517870606 7.732750732 88791718 phoB Stress Phosphate limitation Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 7.865822722 7.650321559 7.626766045 7.316855401 7.951501133 7.911874068 7.740664852 7.816392362 157373634 cytochrome Energy process Energy process Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 6.977275651 6.820203274 7.257617807 6.891575151 6.69539379 227824787 obgE Stress Radiation stress Acidaminococcus sp. D21 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Acidaminococcus; 7.915036259 7.394197189 7.14634201 7.368022859 7.977930463 7.479846441 7.481453902 56551693 linC Organic Remediation Pesticides related compound Zymomonas mobilis subsp. mobilis ZM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Zymomonas;species:Zymomonas mobilis; 7.034512298 7.501911889 7.337580625 7.288090073 6.904666281 7.586882982 7.437384201 7.114135486 7.409286723 110819169 BADH Organic Remediation Aromatics Other aromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7.945266494 7.755407269 7.495948434 7.525204525 7.436383811 7.817116823 7.456231413 7.400753704 7.547914848 119695825 pcc Carbon cycling Carbon fixation Mycobacterium sp. KMS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.837206495 7.904296597 7.894463838 7.846748303 7.90578223 8.160894532 7.80592471 7.931881083 7.793966222 149819973 sigma_24 Stress Sigma factors Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 7.831010817 7.70562942 8.29381557 8.100448376 7.718897721 7.674242597 7.325271936 211959444 arsM Metal Resistance Arsenic Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 7.431915114 7.594814171 7.771971388 7.548249235 7.878872015 8.039702584 7.624363737 7.710484472 7.877372337 254822841 limEH Carbon cycling Carbon degradation Others Mycobacterium intracellulare ATCC 13950 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 7.377509005 7.286183373 7.211229599 7.034346798 7.325604031 15888076 pimF Organic Remediation Aromatics Aromatic carboxylic acid Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.891007467 7.540684562 7.311448044 7.739639345 7.586404509 7.431002579 7.452852104 94549606 sigma_24 Stress Sigma factors Candidatus Koribacter versatilis Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 7.910920284 7.39050481 7.101874142 6.86903657 7.193800078 7.306774017 7.101346629 7.491543125 254474672 sox Sulphur Sulphur oxidation Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8.017303556 7.47617136 7.689130952 7.162515444 7.570360951 7.615797132 7.59997163 7.403629078 85713879 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Nitrobacter sp. Nb-311A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter; 7.937776217 7.572495858 7.626277297 7.5513832 7.654361127 7.833995072 7.633094872 7.3947758 7.702552835 89898960 phn Organic Remediation Herbicides related compound Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 8.129801274 7.958458514 7.775453277 7.91941963 8.026538108 7.856620312 7.92043806 7.900742742 7.816641265 126590513 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bacillus sp. B14905 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.290769999 7.51134231 7.423991206 116252307 SMR_antibiotics Antibiotic resistance transporter Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.261597279 7.50679027 7.402315172 6.796303734 7.721411276 7.624755852 7.23386023 7.306727734 7.46900865 149792521 hly virulence hemolysin Thermosipho melanesiensis BI429 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermosipho;species:Thermosipho melanesiensis; 7.111738675 6.893158957 82618381 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.155037542 6.9082922 7.038278768 224027965 APS_AprA Sulphur adenylylsulfate reductase 7.398884618 7.142307239 116226680 pimF Organic Remediation Aromatics Aromatic carboxylic acid Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 7.523543023 7.396106932 7.157591241 7.596486859 7.117398415 7.638067209 7.560939147 7.24410905 188030555 SMR_antibiotics Antibiotic resistance transporter Erwinia tasmaniensis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia; 7.671874851 7.492646929 7.389201067 225194109 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.057102655 7.098050397 15024585 gyrB other category gyrB Clostridium acetobutylicum ATCC 824 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium acetobutylicum; 7.435293746 7.422724161 7.236395225 6.794586101 7.131533844 7.555768338 7.527840664 7.341713784 7.205784463 222453182 CopA Metal Resistance Copper Halorubrum lacusprofundi ATCC 49239 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 7.389341545 7.471532518 6.89853598 7.153086995 7.561174001 149910384 TehB Metal Resistance Tellurium Moritella sp. PE36 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Moritellaceae;genus:Moritella; 7.404078432 7.228849353 34017182 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.69759371 7.650367021 7.852165636 7.305489628 7.449766013 7.581396848 7.58461984 7.465083705 7.614242569 258585631 endochitinase Carbon cycling Carbon degradation Chitin Vibrio mimicus VM573 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 7.244696315 7.384781518 7.217085861 6.84702715 7.241744265 7.524707502 7.121493772 7.245276788 7.336154743 258537411 amoA Nitrogen Nitrification superkingdom:Archaea; 7.346442615 7.243650597 6.997711943 6.967790412 7.107530056 7.447838548 7.072578481 229762714 amyA Carbon cycling Carbon degradation Starch Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 7.845436668 8.249963756 7.73385526 7.734612353 7.949797904 8.266255995 7.870670388 8.259765454 7.925587959 199594055 narG Nitrogen Denitrification uncultured bacterium 8.044028917 8.237907395 8.295376717 7.800802489 8.534728358 8.404553299 8.57608048 8.286305299 8.246329374 150006434 xylA Carbon cycling Carbon degradation Hemicellulose Bacteroides vulgatus ATCC 8482 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides vulgatus; 7.578009425 7.423173786 7.696632079 7.767055805 7.502110058 217977505 AceB Carbon cycling Carbon degradation others Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 7.462587393 7.667055358 7.384905771 7.272842724 7.467706669 7.674048967 7.139562478 7.644093621 7.279711166 259345800 pstB Stress Phosphate limitation Silicibacter sp. TrichCH4B 7.926691378 7.932444508 8.029659508 7.298046026 7.794831622 7.593946335 7.605250464 7.829374526 144905524 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6.834535709 6.977494699 262355169 phoB Stress Phosphate limitation Bacteroides sp. 2_1_22 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 7.248462649 7.138740302 219939191 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 7.614049905 7.087585261 7.026097755 7.180398082 7.124482141 7.064886824 89902828 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 8.0195679 7.563338426 7.209878837 7.790239368 7.569441361 7.862573091 7.613687158 7.412079383 7.454181095 167036025 hly virulence hemolysin Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.58868699 7.605615916 7.205481371 7.696808239 7.647832671 7.384672743 7.725751123 63256320 pheA Organic Remediation Aromatics Other aromatics Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 8.778944857 8.70405761 8.833275384 8.291908816 8.954209007 8.755003916 8.936781018 8.570701565 165880051 exoglucanase Carbon cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.216854933 7.777585853 7.239639184 7.072040499 7.415615651 170176301 ChrA Metal Resistance Chromium Thermotoga sp. RQ2 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga; 7.261809219 7.385034913 7.212569826 6.740310254 6.82647044 7.329715901 7.029769807 7.065248408 7.060233726 116120406 sigma_24 Stress Sigma factors Leptospira borgpetersenii serovar Hardjo-bovis L550 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira borgpetersenii; 7.350300273 7.321680018 7.273779165 6.971788005 7.531902892 7.152326965 7.056906188 7.421862803 33639785 sigma_70 Stress Sigma factors Prochlorococcus marinus subsp. pastoris str. CCMP1986 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 7.480900177 7.340972887 7.195008854 7.008538617 7.396084692 160342602 katE Stress Oxygen stress Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 7.327731986 6.892480463 7.182024308 7.322543858 7.531479382 7.185986482 7.662211821 218463778 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium etli Kim 5 7.600326097 8.012967323 7.824025416 7.325575241 7.749559027 7.961562839 7.734591746 7.735300096 7.688512584 256690898 amyA Carbon cycling Carbon degradation Starch Halorhabdus utahensis DSM 12940 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus utahensis; 7.647645302 7.522759967 7.189121299 7.449850452 7.930797879 220908242 cadBD Metal Resistance Cadmium Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.352267176 7.295597705 7.495542142 7.306171601 7.650185689 7.258944325 7.588084606 142001162 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.903791592 7.353310138 7.478498123 7.588051943 7.756336602 8.049226124 7.706452234 7.450298947 225093124 bglP Stress Glucose limitation Clostridium sp. M62/1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 7.715461794 7.585568109 7.284188711 7.343905924 7.218103866 7.782915106 7.384406448 7.35849244 7.395632385 261406204 glnR Stress Nitrogen limitation Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.08226256 7.641388175 7.731264068 7.354239116 7.946048549 8.013001966 8.00190498 7.929468806 7.765793185 194307067 terminase_large_subunit Bacteria phage REPLICATION Morganella phage MmP1 order:Caudovirales;family:Podoviridae;genus:T7-like viruses; 7.282851438 7.252658517 6.84081841 7.624813264 63081960 nosZ Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 8.007532239 8.022475884 7.975523947 7.901087254 8.19120531 8.139337871 8.447679671 8.1522423 8.233873126 223894733 sigma_24 Stress Sigma factors bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 7.566938866 6.968054326 7.257869594 7.158989278 7.398703867 225219621 rubisco Carbon cycling Carbon fixation Halothiobacillus neapolitanus c2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Halothiobacillaceae;genus:Halothiobacillus;species:Halothiobacillus neapolitanus; 6.774596922 7.558794281 7.709060659 7.495593412 7.605618747 146284210 AceB Carbon cycling Carbon degradation others Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 7.387238103 7.351331302 7.740279093 7.167897754 7.495019841 7.654275985 7.508891087 7.500234161 7.57384898 237809473 sigma_38 Stress Sigma factors Tolumonas auensis DSM 9187 7.225379777 7.068545814 7.240115778 7.139875977 7.018157114 6.966754258 6.701306391 71909404 pheA Organic Remediation Aromatics Other aromatics Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 7.694037331 7.363569174 7.215057746 7.105281585 7.272776443 7.563482804 7.478662407 7.322255251 52080688 hly virulence hemolysin Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 7.952797503 7.470348739 7.527699918 7.728054919 197627025 fnr Stress Oxygen stress Cyanobium sp. PCC 7001 7.771837444 8.188086866 8.528178072 8.772717555 8.296958105 7.784365425 8.19797626 222441352 pstB Stress Phosphate limitation Labrenzia alexandrii DFL-11 7.771217654 7.762430407 7.611916606 7.662349467 7.803672533 7.83126317 7.742747689 7.492997016 13357637 gyrB other category gyrB Ureaplasma parvum serovar 3 str. ATCC 700970 superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Mycoplasmatales;family:Mycoplasmataceae;genus:Ureaplasma;species:Ureaplasma parvum; 8.836217418 8.259447379 8.231366949 8.612347227 8.42641591 8.458325791 8.31769986 8.393698987 27381528 vdh Carbon cycling Carbon degradation Others Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.86052528 7.779924239 7.483058705 7.791706731 7.70264803 7.683510423 7.792228645 7.805897366 7.72185383 110820932 scnABC Organic Remediation Others Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7.728616257 7.771724984 7.65698552 7.64672929 7.628382516 7.909725273 7.626502854 7.312912797 7.497333566 239805498 fnr Stress Oxygen stress Variovorax paradoxus S110 7.400471841 7.227816067 7.147408521 7.294495552 7.229732809 7.388204675 7.252835997 9633023 helicase_P4alpha_type Bacteria phage REPLICATION Lactobacillus phage phiadh order:Caudovirales;family:Siphoviridae; 7.343032729 7.117201405 7.171275641 7.483660812 219965784 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium 8.116734182 7.7601938 7.709520391 7.927373837 7.727472174 7.598563722 7.570060598 7.660422947 146340090 trzN Organic Remediation Herbicides related compound Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.964350876 7.622120782 7.425944892 7.53445184 8.064778529 7.623265327 257870340 srt virulence surface protein Enterococcus gallinarum EG2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus gallinarum; 7.789242706 7.504459983 7.491154396 7.338220599 7.612172362 7.892718045 7.534400886 7.732382532 126459244 cellobiase Carbon cycling Carbon degradation Cellulose Pyrobaculum calidifontis JCM 11548 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum calidifontis; 7.832850004 7.889715773 7.810637717 7.768738012 8.263046483 7.870445149 8.256179966 7.938400645 8.017778221 124300763 gyrB other category gyrB Pectobacterium carotovorum subsp. carotovorum superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 7.234022715 6.888036941 7.294152719 6.8949562 7.394957879 116072215 nifH Nitrogen Nitrogen fixation Synechococcus sp. BL107 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.285575909 7.184827859 7.49518331 222447609 phoB Stress Phosphate limitation Chloroflexus sp. Y-400-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus; 6.890778254 6.677655636 7.110922019 6.937449953 6.659145706 7.412358784 7.015419851 7.36509276 6729255 gyrB other category gyrB Mycobacterium marinum superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.38084194 7.992416513 7.942953822 8.045176645 7.682561633 7.820693465 224801746 sigma_24 Stress Sigma factors Opitutaceae bacterium TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 7.064596811 6.940192593 7.566432939 150376266 katE Stress Oxygen stress Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 7.870609501 7.830804035 7.939444017 7.475770676 7.830145851 7.888970941 7.731370921 8.009260728 7.538689478 220907004 sigma_70 Stress Sigma factors Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.40086547 7.537089942 7.282661207 147850647 ahpC Stress Oxygen stress Synechococcus sp. RCC307 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.160847594 7.306901692 114327577 pstB Stress Phosphate limitation Granulibacter bethesdensis CGDNIH1 7.325891506 7.291209502 7.811011429 7.37511702 7.575372647 7.828090734 7.900995793 7.989198228 7.958341974 91792562 sigma_38 Stress Sigma factors Shewanella denitrificans OS217 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella denitrificans; 7.26947515 7.082406031 264674501 sigma_24 Stress Sigma factors Caulobacter segnis ATCC 21756 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 7.445699058 7.354594276 7.384526908 7.05421288 7.459206612 7.503486979 7.618287682 7.630859397 148261879 Fe_S_cluster_binding_protein Bioleaching Electron transport Acidiphilium cryptum JF-5 7.527851933 7.464867761 7.704439417 7.759421554 7.934177874 8.209122683 8.169853928 7.99814494 198259948 grpE Stress Heat shock Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 7.409760123 7.164206034 206576877 tutFDG Organic Remediation Aromatics BTEX and related aromatics Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 7.595391362 7.315032927 7.303497198 7.074329205 7.486182086 7.76560291 7.421138398 7.248138727 7.490880083 257065568 ahpC Stress Oxygen stress Anaerococcus prevotii DSM 20548 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Anaerococcus;species:Anaerococcus prevotii; 7.186011724 7.229589796 88809396 sigma_70 Stress Sigma factors Synechococcus sp. WH 7805 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.663136594 7.855518895 7.679696503 7.812458222 7.789284944 7.610979654 7.68431691 7.707571 7.872228459 167463167 glnR Stress Nitrogen limitation Paenibacillus larvae subsp. larvae BRL-230010 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus larvae; 7.809003312 7.779199304 7.70346765 8.154800687 7.433115037 156519336 BMO Organic Remediation Other Hydrocarbons Pseudomonas butanovora superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 8.043123548 7.959445981 7.878314205 7.850779873 8.085665181 7.924133951 8.218826004 7.845937379 8.003928057 34495458 gyrB other category gyrB Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 7.195464526 7.252247208 7.857670499 7.481863757 7.304653729 7.863386176 260615031 endochitinase Carbon cycling Carbon degradation Chitin Vibrio furnissii CIP 102972 7.075189963 7.233912951 7.450939629 7.338302799 7.616763761 7.080394276 6.970002743 159179293 Arylest Organic Remediation Aromatics Other aromatics alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 7.510340884 7.900069691 7.957940317 7.502510893 8.098299857 7.908917976 7.816702981 7.898411088 7.758176036 126097606 TehB Metal Resistance Tellurium Actinobacillus pleuropneumoniae L20 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus pleuropneumoniae; 7.077025665 7.254793302 7.196773092 6.66914207 7.296182349 59892356 nifH Nitrogen Nitrogen fixation uncultured forest soil bacterium superkingdom:Bacteria; 7.62219022 7.712564364 7.394197517 7.069540403 7.54538993 160363798 CopA Metal Resistance Copper Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.483376297 7.479970041 7.453097623 7.581669529 7.463170573 7.7217396 6.943850297 7.227617441 40218016 phenol_oxidase Carbon cycling Carbon degradation Lignin Flammulina velutipes superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Flammulina; 7.374418167 7.001038656 7.241541753 7.044572876 7.515133073 108463906 sigma_24 Stress Sigma factors Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 7.223661459 7.068341961 108777177 TerC Metal Resistance Tellurium Yersinia pestis Nepal516 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia pestis; 7.277351741 7.129047536 6.923608614 68448380 proV Stress Osmotic stress Staphylococcus haemolyticus JCSC1435 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus haemolyticus; 6.969973677 7.52959252 167034303 pheA Organic Remediation Aromatics Other aromatics Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.480678593 7.188603147 7.93603146 7.378235997 7.980153367 7.785505308 7.681368744 7.633896097 126105549 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.039808603 6.71744531 7.056747727 6.937467468 7.606431165 4808514 pcaG Organic Remediation Aromatics Other aromatics Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.710964391 7.87101582 7.8472461 8.407036312 7.636096248 7.952186344 110286662 Arylest Organic Remediation Aromatics Other aromatics Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 7.336991436 7.259061674 7.345156487 6.842545342 7.612537332 7.068919996 7.20173311 18147167 gyrB other category gyrB Alcanivorax sp. PR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 7.354951435 7.354983615 7.252903446 7.17977197 6.900825306 151281401 sox Sulphur Sulphur oxidation Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 7.330435048 7.449986854 7.093446198 7.114877448 7.099405015 238837002 mcrA Carbon cycling Methane Methane production uncultured euryarchaeote superkingdom:Archaea;phylum:Euryarchaeota; 7.10402565 7.062979715 6.977158409 7.293940146 7.354416973 7.157836515 124515960 ABC_transporter_II Bioleaching other category Leptospirillum sp. Group II UBA 7.863532951 7.966357431 8.021338292 7.118951875 7.664530906 7.812686164 7.449865533 8.004087904 260456791 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 7.871970281 7.993406728 7.821616051 8.181529461 7.979733635 7.992683369 7.992358825 8.200778568 70780026 groEL Stress Heat shock Streptococcus sobrinus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 7.482214438 7.536285881 8.233025322 8.229369226 7.850529525 8.22262319 7.701158186 8.042517135 7.985097181 8978311 bphD Organic Remediation Aromatics Polycyclic aromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7.343067905 7.263942408 6.950337174 6.888734285 7.333113578 87302786 glnA Stress Nitrogen limitation Synechococcus sp. WH 5701 7.58526996 7.630710039 7.697838802 7.677445051 8.018411079 8.030827435 8.069921922 8.095853984 148838659 pulA Carbon cycling Carbon degradation Starch Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 7.463932524 7.369418328 7.795171845 7.806851321 7.521231127 8.101510982 7.651306407 7.652408061 7.602216647 118439326 B_lactamase_A Antibiotic resistance Beta-lactamases Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 8.088750693 8.010449644 7.611692464 8.256697709 8.4645812 8.481735364 8.476237611 8.302425111 7.89840719 254947674 sigma_24 Stress Sigma factors Dyadobacter fermentans DSM 18053 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 7.369026408 7.314893221 6.786809486 6.984328552 7.449193647 7.577894431 7.30277041 7.275501113 241191191 sigma_24 Stress Sigma factors Bifidobacterium animalis subsp. lactis Bl-04 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 7.409885241 7.114432714 7.313489374 6.874914445 7.198172616 7.521134335 7.428381494 7.308208634 7.346796775 113869531 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 7.910469958 8.17881383 7.314519078 7.946405343 7.736132282 7.971915505 7.712135911 7.949917484 148519310 nmoA Organic Remediation Aromatics Nitoaromatics Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 7.355481707 7.755255817 7.564777108 8.093387323 7.94208148 8.161919173 8.189924231 8.573324737 217977946 nirA Nitrogen Assimilatory N reduction Methylocella silvestris BL2 7.797037028 7.73431957 7.711771418 7.075650878 7.608307706 7.678337154 7.269662646 7.657083988 151279865 MFS_antibiotic Antibiotic resistance transporter Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 7.21019295 7.461926811 6.840332187 7.478098317 28974734 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.879601289 7.631231284 7.376670717 7.338525861 7.675669519 7.822033358 7.706554105 7.012586371 7.747793558 115517043 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.914252863 7.943049924 8.255973829 7.689927273 8.030257993 8.088413781 7.673273349 8.280313661 7.82734008 118579219 TerC Metal Resistance Tellurium Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 7.803630256 7.727257408 7.73347838 7.222639801 7.548334544 7.611714459 7.607143181 8.037388677 7.408562651 169757338 pstB Stress Phosphate limitation Pseudomonas putida W619 7.588350726 7.397837103 7.706718354 7.578742334 7.583566023 7.948820822 7.510959384 7.538149733 7.900908471 124507531 obgE Stress Radiation stress Shewanella putrefaciens 200 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella putrefaciens; 7.440064755 7.036668653 6.75654534 7.419327643 7.183872395 7.308854678 91693948 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.904049985 7.860675729 7.392330456 7.554159674 7.727340641 7.686874502 7.681792746 7.753708669 7.92852117 251774079 sigma_32 Stress Sigma factors Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 7.197515153 7.160187129 7.13677478 126387814 pcaG Organic Remediation Aromatics Other aromatics Acinetobacter baumannii ATCC 17978 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 7.58895956 7.217301742 7.302601919 6.788367614 7.351132886 7.15467991 7.591168288 148653679 nitA Organic Remediation Aromatics Other aromatics Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 8.200482813 8.102488856 8.129606227 7.875306583 8.398909526 8.368971927 8.025803794 8.209920412 8.292402498 225905984 dsrA Sulphur sulfite reductase uncultured prokaryote 7.547990983 7.293125251 7.007422726 7.050798257 6.891960718 7.53419975 6.981912982 7.300542236 256035440 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Chitinophaga pinensis DSM 2588 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 8.086930412 7.652061696 7.716844554 7.201822886 7.888668379 7.836506067 7.681887056 7.892329077 83635675 Arylest Organic Remediation Aromatics Other aromatics Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 7.788523214 7.633546948 7.603737093 7.003789038 8.02029323 7.764129324 7.786846661 7.355865939 7.65170435 67544456 ChrA Metal Resistance Chromium Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 7.841495048 7.738117049 7.890670785 6.978550037 7.754127501 7.892633904 7.545487554 7.638269084 113949868 ArsC Metal Resistance Arsenic Shewanella baltica OS195 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 7.277150013 7.172111071 118469608 catechol_B Organic Remediation Aromatics Other aromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 7.46293686 7.763506817 7.875367674 7.382154799 7.707159783 7.953357224 7.640193663 7.591926385 7.415299859 146190102 exaA Organic Remediation Chlorinated solvents Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.350089978 7.293917655 7.677457603 7.039922335 7.621700005 7.755212972 7.553889655 7.561116112 77461743 cytochrome Energy process Energy process Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.580705614 7.548195308 7.294583552 7.629519421 7.92973951 8.153326168 8.215367059 8.057941925 88914973 nrfA Nitrogen Dissimilatory N reduction Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 7.198909444 7.243339248 7.022691268 6.673351724 7.372322948 213407364 cellobiase Carbon cycling Carbon degradation Cellulose Schizosaccharomyces japonicus yFS275 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Schizosaccharomycetes;order:Schizosaccharomycetales;family:Schizosaccharomycetaceae;genus:Schizosaccharomyces;species:Schizosaccharomyces japonicus; 7.609472709 7.719042463 8.117175141 7.536792037 7.797268978 7.980698957 7.59874881 7.75743094 7.55686641 91792604 AceA Carbon cycling Carbon degradation others Shewanella denitrificans OS217 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella denitrificans; 7.406595772 7.369902477 7.538632185 7.326151903 7.226550821 7.9068568 7.706269968 7.384709503 7.673317684 45358855 glucoamylase Carbon cycling Carbon degradation Starch Methanococcus maripaludis S2 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanococcaceae;genus:Methanococcus;species:Methanococcus maripaludis; 7.334347681 6.95405778 89343962 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Rhodoferax ferrireducens DSM 15236 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 8.141331769 7.718045811 7.875962431 7.651677255 7.717731155 7.57718979 56809391 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.802495708 7.509102958 7.327140108 7.293404384 7.773460792 84778371 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.472122273 6.943713381 7.31257289 75703975 nifH Nitrogen Nitrogen fixation Anabaena variabilis ATCC 29413 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena variabilis; 6.813836814 7.246236581 281196495 sigma_24 Stress Sigma factors Cylindrospermopsis raciborskii CS-505 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Cylindrospermopsis;species:Cylindrospermopsis raciborskii; 7.151730771 6.962407159 7.393130842 7.190463172 6.91111983 8.051878535 7.010099372 7.087637219 7.251113569 218047576 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7.241376579 7.197509853 154674 ATP_synthase_F1_or_F0 Bioleaching other category Acidithiobacillus ferrooxidans 7.367055467 7.204456522 7.200285945 6.956925421 7.154558252 152975463 CorC Metal Resistance Cobalt Bacillus cereus subsp. cytotoxis NVH 391-98 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cytotoxicus; 7.425560194 7.221980243 7.313874101 6.934376917 7.278524915 7.440784585 7.277118269 7.005003254 7.429339183 46127925 tfdA Organic Remediation Aromatics Chlorinated aromatics Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 7.579880898 7.563378251 7.650753331 7.113092909 7.099550003 7.224312946 7.541750679 225378729 pstB Stress Phosphate limitation Roseburia inulinivorans DSM 16841 7.638918176 7.403038938 7.285273541 7.736381922 209869184 AprA Sulphur adenylylsulfate reductase uncultured marine bacterium superkingdom:Bacteria; 7.277311488 6.884451434 7.010358939 261416095 pstB Stress Phosphate limitation Fibrobacter succinogenes subsp. succinogenes S85 7.387480584 7.437217742 7.371349052 6.872874864 7.380023404 7.487040085 7.024392791 6.985805436 7.493597211 71066687 grpE Stress Heat shock Psychrobacter arcticus 273-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter arcticus; 6.98144128 6.838968431 70992961 xylanase Carbon cycling Carbon degradation Hemicellulose Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 7.387738247 7.400564203 116734403 nirK Nitrogen Denitrification Nitrosospira briensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira; 7.144581192 6.89925651 6.939727287 6.536191495 7.228960612 49615347 gyrB other category gyrB Bacillus thuringiensis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 6.921031737 7.42375302 6.893752448 196113732 ppx Phosphorus Phosphorus utilization Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 7.979186635 7.941880656 8.039916686 7.192693316 7.864895675 7.519192337 7.549672307 7.515552727 7.95149599 55978110 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.460561415 7.301550272 7.292799403 6.905110218 7.395968969 145843726 AceA Carbon cycling Carbon degradation others Tuber borchii superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Pezizomycetes;order:Pezizales;family:Tuberaceae;genus:Tuber; 7.775500038 7.75128768 7.987436256 7.890770147 7.36905599 91784690 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 7.171194804 7.052545492 281423591 sigma_24 Stress Sigma factors Prevotella oris F0302 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella oris; 7.300205725 7.431331892 6.956784767 7.189463165 34304599 gyrB other category gyrB Mesoplasma seiffertii superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Entomoplasmatales;family:Entomoplasmataceae;genus:Mesoplasma; 7.317793152 7.789700348 7.355683413 7.617379089 7.462633378 7.571178695 7.518239276 7.124402217 94555587 glnA Stress Nitrogen limitation Deinococcus geothermalis DSM 11300 7.547659185 7.902803225 8.239259149 7.528763333 8.015815183 8.266486987 8.157813792 8.111463276 148260132 cadmium_resistance_gene Bioleaching Metal Resistance Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 8.794784019 8.70169029 8.475385922 8.561481473 8.512410845 8.763966972 8.780276147 8.846528556 8.694350826 167358673 nhh Organic Remediation Aromatics Nitoaromatics Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.68446816 7.309829508 7.269443893 7.364423739 7.557029781 7.614175252 7.397604314 7.291702116 7.816307468 169637239 clpC Stress Protein stress Candidatus Desulforudis audaxviator MP104C superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Candidatus Desulforudis;species:Candidatus Desulforudis audaxviator; 7.64419571 7.584449328 7.544004519 7.124405875 7.760214061 7.683922245 7.457766796 7.636152266 157373081 exaA Organic Remediation Chlorinated solvents Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 7.116554947 7.610716648 7.701699305 7.941355302 7.120827193 8.29227546 7.609508446 7.516878752 7.555528781 21326618 amoA Nitrogen Nitrification superkingdom:Bacteria; 7.523501269 7.434826196 7.261306064 7.096736191 7.419459512 7.837344037 6.929887465 7.394852907 14331093 sox Sulphur Sulphur oxidation Thiobacillus sp. KCT001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 7.509591614 7.470851788 6.968496058 7.877456524 7.347832489 7.355503366 87121077 phoB Stress Phosphate limitation Marinomonas sp. MED121 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 7.205043198 7.072411763 6.843110688 6.936947285 162568513 aoxB Metal Resistance Arsenic Pseudomonas sp. 89 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.093249636 7.87139277 7.855359166 8.277010575 7.214091049 8.221102151 110820059 pcpB Organic Remediation Herbicides related compound Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7.38876458 7.697521213 7.185180381 7.347286559 7.673934812 7.792087666 7.050974811 7.6911363 242278232 cytochrome Energy process Energy process Desulfovibrio salexigens DSM 2638 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio salexigens; 7.4877452 7.317996307 7.454292249 90020900 sigma_38 Stress Sigma factors Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 7.949402913 7.65138 7.847355506 7.986381607 7.663662292 7.838842603 7.730580988 1729781 phenol_oxidase Carbon cycling Carbon degradation Lignin Podospora anserina superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora; 7.151911377 6.901780371 6.888586087 146291999 ahpF Stress Oxygen stress Shewanella putrefaciens CN-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella putrefaciens; 7.55295704 7.104944007 6.728325752 7.377819013 69154195 ArsC Metal Resistance Arsenic Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 7.615849137 7.400601898 7.29435213 7.580296902 7.321427437 7.859141007 7.469220372 7.400189479 121711319 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7.756874238 7.805322106 7.891436558 7.266510291 7.792793914 7.811490335 7.604890974 7.950698192 7.384269334 209499282 adpB Organic Remediation Pesticides related compound Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.632974307 7.636802252 7.738826052 7.769287607 7.8898122 7.697930156 7.598742823 7.838147887 145557676 merP Metal Resistance Mercury Rhodobacter sphaeroides ATCC 17025 7.308795498 7.584379556 7.769572842 7.869779898 7.873790676 7.061663219 7.135600308 7.736380008 84713182 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8.150498723 7.956577254 7.710545498 8.09637675 7.793103539 8.205647726 7.937299128 7.496603786 7.660758123 112464181 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.490673241 6.996178543 7.03610363 6.975795056 6.950823504 7.352607539 7.130344861 6.889750805 7.283170955 95111190 benAB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas 7.237416876 7.33859429 7.550665938 7.084377656 7.701453982 7.133658178 7.012301269 77382626 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 6.642573222 6.810263664 7.455459998 165880009 exoglucanase Carbon cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.315948249 7.443566118 7.37050119 6.983828194 7.554421529 7.143761899 7.659614313 126513530 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces vitaminophilus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.122307216 8.150652307 8.114041784 7.510356925 8.065397675 7.710973772 7.900444029 7.976806499 8.077760919 82746439 tutFDG Organic Remediation Aromatics BTEX and related aromatics Clostridium beijerincki NCIMB 8052 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium beijerinckii; 7.565387338 8.005777158 7.265104511 7.028902821 7.06831804 7.628700094 7.500159837 7.329455251 7.404600503 84509124 pcaG Organic Remediation Aromatics Other aromatics Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 7.898046197 8.055645677 7.469887936 7.827070814 7.901998171 7.892299959 7.927759839 7.809597775 7.915339782 154251284 tfdA Organic Remediation Aromatics Chlorinated aromatics Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 7.745467315 7.906539666 7.939224885 7.339904373 7.90932386 7.884907775 7.913916442 7.974144165 7.731612274 161381232 pimF Organic Remediation Aromatics Aromatic carboxylic acid Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 7.984155575 7.962649496 7.767692365 7.900381337 8.378930749 8.091253888 8.27106011 7.871986117 8.072826527 206579709 nhh Organic Remediation Aromatics Nitoaromatics Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 8.039372371 7.812700665 8.031971929 8.409021676 8.244619049 7.722641212 221067809 pcc Carbon cycling Carbon fixation Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.895165216 8.043679126 7.792908068 7.662884368 8.320037287 8.221535892 8.142983999 8.415417918 110347183 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 7.168101024 8.029975086 8.07110745 7.934125826 8.154504971 8.34977383 7.983199981 116049484 SMR_antibiotics Antibiotic resistance transporter Pseudomonas aeruginosa UCBPP-PA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 7.665099221 7.990160802 7.933878231 8.076035787 7.918914801 8.015107769 8.231234251 8.557213785 8.168812329 4753674 pstA Stress Phosphate limitation Burkholderia sp. 7.233019 7.109653023 7.070053932 7.359677779 6.911590095 37266291 phytase Phosphorus Phosphorus utilization Obesumbacterium proteus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Obesumbacterium; 7.328648604 7.295324463 7.363172255 7.295820464 7.036511963 7.888025943 13445245 Xamo Organic Remediation Other Hydrocarbons Mycobacterium sp. superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.934018774 8.10918315 7.796273325 7.57565836 8.051859746 7.795946495 7.995806817 7.779413066 7.666955204 253576089 sigma_70 Stress Sigma factors Paenibacillus sp. oral taxon 786 str. D14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 7.389817876 7.340907061 7.227944685 7.273619714 7.364600346 7.412707712 7.38244428 7.101230891 7.388660277 193226491 SMR_antibiotics Antibiotic resistance transporter Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 7.698578877 7.788933376 7.723938231 7.211611311 8.191732746 8.031591424 7.778646637 7.898150761 13936683 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.334015185 7.313583397 7.052297074 7.154861655 71282406 sigma_70 Stress Sigma factors Colwellia psychrerythraea 34H superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Colwelliaceae;genus:Colwellia;species:Colwellia psychrerythraea; 7.495862176 7.317548782 70672913 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.678976965 7.938093081 7.234340553 7.513203151 91775435 CopA Metal Resistance Copper Methylobacillus flagellatus KT 7.641367501 7.364664967 7.58994817 7.489761846 7.373018815 149128803 pcc Carbon cycling Carbon fixation Bacteroides caccae ATCC 43185 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides caccae; 7.297958494 7.34086801 7.342035412 77457505 silC Metal Resistance Silver Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.048609012 7.851548421 7.961186414 7.658793295 8.157548637 8.035732164 8.218360253 7.792382344 8.079162851 157804858 APS_AprA Sulphur adenylylsulfate reductase sulfur-oxidizing bacterium DIII5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.518836494 7.601873963 7.758880444 7.503516775 7.543774752 7.647659067 7.772629109 7.455170007 7.553626251 82791395 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 7.673795791 7.570713637 7.615733148 7.957103325 7.441435577 7.984383509 7.481324647 7.352569515 7.406286477 38639717 silC Metal Resistance Silver Klebsiella pneumoniae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella; 6.813238851 7.237207513 6.795741739 7.003912354 149182006 pstB Stress Phosphate limitation Bacillus sp. SG-1 6.862480924 7.088245353 6.875056346 7.125846471 91227498 sigma_32 Stress Sigma factors Vibrio alginolyticus 12G01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 7.155285202 7.104325203 7.086154922 114737484 merP Metal Resistance Mercury Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 7.571999609 7.23733846 8.091405639 8.133761232 7.344926163 7.461223963 7.168729054 7.449695341 78102053 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.037095584 6.934027062 7.074301255 229333908 AceB Carbon cycling Carbon degradation others Vibrio cholerae 12129(1) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 7.958581413 8.152999421 7.89623517 7.417492986 8.081562588 7.909274575 7.81921069 7.491837831 7.83753558 238755877 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Yersinia ruckeri ATCC 29473 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia ruckeri; 7.781989861 7.921179241 7.489105185 7.652788065 7.687936034 7.704067611 7.433787741 7.668675151 170749733 nmoA Organic Remediation Aromatics Nitoaromatics Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 7.513022498 7.06987387 229243513 exoglucanase Carbon cycling Carbon degradation Cellulose Cellulomonas flavigena DSM 20109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 8.05767228 7.79270862 7.890393653 7.715977646 8.018941221 7.627147196 7.571875844 7.34811867 162568555 aoxB Metal Resistance Arsenic uncultured bacterium superkingdom:Bacteria; 7.113199004 7.469991379 7.933514307 7.860784742 7.087273787 7.863994012 7.081147073 7.538282203 76056967 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.130399874 8.068710506 7.723401579 8.300229573 8.150581421 7.782772462 8.290300349 8.05294121 70606156 ferredoxin_II Bioleaching Electron transport Sulfolobus acidocaldarius DSM 639 7.168358081 7.177846594 4335678 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas xenophaga 7.073820219 6.903858739 6.992868501 68127933 FTHFS Carbon cycling Acetogenesis Leishmania major superkingdom:Eukaryota;order:Kinetoplastida;family:Trypanosomatidae;genus:Leishmania; 7.376126 7.375537985 7.406141126 6.849107325 7.095071112 7.475723456 7.315012996 7.063385529 76557817 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Natronomonas pharaonis DSM 2160 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natronomonas;species:Natronomonas pharaonis; 7.261712268 7.444008889 7.657487288 7.065529369 7.350703902 7.655125955 260408019 SMR_antibiotics Antibiotic resistance transporter Acinetobacter sp. RUH2624 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter genomosp. 13TU; 7.112668264 7.012177016 33326784 pimF Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. CIB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 7.478369971 7.924401556 8.120576417 8.291868084 7.712697936 8.363996213 7.471114565 7.907643857 7.933966194 126627437 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 7.588114384 7.560222297 7.446507842 7.58028766 7.225934742 7.661943858 7.271005788 7.278085082 37955640 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.117699424 7.124822729 7.23406626 6.800424308 6.729389272 7.490048528 7.042998693 6.872715528 7.1738968 189336264 mer Metal Resistance Mercury Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 7.91007273 7.802571013 7.962321093 8.072159345 7.916334413 8.13635014 8.38580897 8.366170982 8.200758757 161164913 sigma_24 Stress Sigma factors Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 8.151535032 7.698203035 7.393417567 120612180 ureC Nitrogen Ammonification Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 7.954673105 7.943242335 8.239425366 7.845539904 8.024097157 8.092021142 8.099238563 8.251803177 8.125434576 86165092 ZntA Metal Resistance Zinc Marinomonas sp. MED121 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 7.730935093 7.452974679 6.992929138 7.499647003 8.047610622 8.055505777 8.008061819 8.007205931 240170170 B_lactamase_C Antibiotic resistance Beta-lactamases Mycobacterium kansasii ATCC 12478 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 7.9769023 7.680855181 7.511010218 7.85449395 8.245756346 7.985750444 7.924992907 7.767774776 83816389 cda Carbon cycling Carbon degradation Starch Salinibacter ruber DSM 13855 8.17790602 7.956085287 7.670842551 7.429248679 7.900519389 7.72152954 7.719468171 8.031181518 7.689237981 158319652 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus oremlandii; 7.322957512 7.112863005 209538347 SMR_antibiotics Antibiotic resistance transporter Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 6.984855905 7.501675508 7.19902933 7.500558434 7.266587232 7.670261282 7.465864482 7.387440504 7.303847725 34397542 fnr Stress Oxygen stress Porphyromonas gingivalis W83 6.88628755 6.859615313 7.193250741 7.023769459 7.630154622 162146597 oxyR Stress Oxygen stress Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 7.526513194 7.389011348 7.718660655 7.383151762 7.410576418 7.790132241 7.656346281 7.617611821 7.705818216 19917111 pstA Stress Phosphate limitation Methanosarcina acetivorans C2A 7.274208557 7.241537776 7.658586424 7.643194927 7.122924363 7.612633786 6.974218019 7.376499315 110678601 ZntA Metal Resistance Zinc Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 7.34980035 7.772617332 7.591706656 7.19149726 7.790113271 7.750191391 7.88873726 7.912821199 7.455215525 134139516 TerD Metal Resistance Tellurium Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 7.831204676 7.733915034 7.535095823 7.200520542 7.867846845 7.639213771 7.586156025 7.782730134 87135378 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Novosphingobium aromaticivorans DSM 12444 9.248516974 9.441474938 9.13361538 9.121692791 9.395128578 9.076513569 9.266249363 9.199649614 9.362742869 77378783 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.328463188 7.48991708 7.114298886 7.177256968 7.371096713 7.150781742 7.060579994 7.317563456 85668049 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.796645618 7.706590346 7.501369393 7.385554405 7.889148189 7.913676827 7.431470607 7.66328528 256771025 sigma_24 Stress Sigma factors Streptomyces sp. C superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7.831657617 7.633893548 8.155241742 7.96114808 8.523421691 8.139738977 7.741192012 7.377157033 119774345 cytochrome Energy process Energy process Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 8.13860126 7.412516264 7.548088454 7.712315427 7.941361376 7.971429223 7.908644731 7.690540524 8.076326274 225197248 Tet Antibiotic resistance other Desulfonatronospira thiodismutans ASO3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfonatronospira;species:Desulfonatronospira thiodismutans; 7.405060129 7.30302602 7.745275739 7.722107046 7.721986854 7.760957836 7.688931744 7.576414732 7.750899839 112463267 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.712840081 7.446737248 7.654596088 7.64394346 7.56292176 7.733621894 7.505376669 7.381685168 55792811 xylanase Carbon cycling Carbon degradation Hemicellulose Penicillium canescens superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 7.907425073 7.599944607 7.268074127 7.203365171 7.414408747 9181824 major_capsid_protein Bacteria phage STRUCTURAL Lactococcus phage Q44 7.378264333 7.338366726 7.516991545 7.465850504 7.681525755 7.835850745 7.851738211 7.690784635 7.846757059 153813960 phoB Stress Phosphate limitation Ruminococcus torques ATCC 27756 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus torques; 7.323591618 6.95408208 148572717 katE Stress Oxygen stress Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 8.381127414 7.726548836 7.574802204 7.698851076 8.006656026 8.0793107 7.972252516 7.909672257 8.180710264 126718810 nhh Organic Remediation Aromatics Nitoaromatics Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.976692805 7.724644375 7.671162427 7.748020016 7.655587885 7.853828021 7.586531435 7.718600786 7.387193991 148342404 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.144027195 6.961426955 7.307495332 114776576 sigma_32 Stress Sigma factors Mariprofundus ferrooxydans PV-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Zetaproteobacteria;order:Mariprofundales;family:Mariprofundaceae;genus:Mariprofundus;species:Mariprofundus ferrooxydans; 7.796001626 7.78452664 7.991651753 8.174200928 8.14848618 8.153154736 8.034659533 7.87812077 103485896 dnaK Stress Heat shock Sphingopyxis alaskensis RB2256 8.513509581 8.256859948 7.922250508 8.646098186 8.472181951 8.061943017 8.036874382 89316981 gyrB other category gyrB Mycobacterium flavescens PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 7.849906312 7.819751104 7.46473814 8.054374832 8.149439954 8.292746567 8.460144382 8.257048565 152072156 aoxB Metal Resistance Arsenic Beggiatoa sp. PS superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Beggiatoa; 7.705046517 7.811160136 7.601219634 7.192781349 7.512977878 7.371389494 8.017454179 209525359 cap virulence capsule Arthrospira maxima CS-328 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira maxima; 7.517268522 7.216150861 7.546822709 7.538336258 7.194502905 149276605 katE Stress Oxygen stress Pedobacter sp. BAL39 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter; 7.281746101 7.454699451 7.491326037 7.148105812 7.267933054 219544519 CopA Metal Resistance Copper Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 7.393074351 7.503740621 7.401218207 7.004133529 7.260062639 7.225076585 7.348847108 7.25985816 46138257 nagG Organic Remediation Aromatics Aromatic carboxylic acid Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 7.206852713 7.488769862 7.66496505 7.154776445 7.561762934 7.221313331 7.894117377 7.444310053 120605727 CopA Metal Resistance Copper Acidovorax sp. JS42 7.610498552 7.969720218 7.649639919 7.668335716 7.943230848 8.005613128 8.116436837 7.792249116 170725515 sigma_70 Stress Sigma factors Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 7.038855268 7.046991913 6.817766815 6.946564046 7.53410386 6.894339687 7.227739144 254446389 ara Carbon cycling Carbon degradation Hemicellulose Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 7.777836619 7.469348181 7.344494176 7.019506397 7.441052252 7.732155222 7.566065841 7.086400256 7.727329904 151364229 TehB Metal Resistance Tellurium Shewanella baltica OS185 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 7.508698359 7.699481632 7.271014753 7.186685077 7.499414053 7.731731328 7.694133406 7.135372361 269306291 xylA Carbon cycling Carbon degradation Hemicellulose Xylanimonas cellulosilytica DSM 15894 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Xylanimonas;species:Xylanimonas cellulosilytica; 7.573467021 7.341334007 8.028664896 7.600352556 7.384726508 7.854274862 7.456472352 7.373203243 160360948 CopA Metal Resistance Copper Petrotoga mobilis SJ95 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Petrotoga;species:Petrotoga mobilis; 7.155650412 7.097704845 39935326 ArsC Metal Resistance Arsenic Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.355571988 7.785381717 7.758316585 8.226549675 8.058883848 8.006629007 7.870347259 8.078576089 154151458 pstA Stress Phosphate limitation Candidatus Methanoregula boonei 6A8 7.392791508 7.430453917 7.237834838 7.278016518 7.085303134 7.785473307 7.236342286 7.349398126 7.304074856 217501992 glnA Stress Nitrogen limitation Methylocella silvestris BL2 8.348430001 7.504197217 8.076268028 7.90034788 8.355800784 8.375618431 7.927805228 8.210960984 167035579 iro virulence Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.408419934 7.444197019 7.221430612 7.164487457 7.398511953 7.979530591 7.610883613 7.589284597 7.294207673 146743238 ArsC Metal Resistance Arsenic Leptospirillum ferriphilum superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 7.473924825 7.555365184 7.496711522 7.119141963 7.227611969 7.552662477 7.686812897 7.437135455 7.834047595 86558621 fnr Stress Oxygen stress Synechococcus sp. JA-2-3B'a(2-13) 8.0740549 8.188472748 8.050974743 7.652252034 8.448675486 7.91179606 7.989505697 8.272104601 8.333135667 114739151 pnbA Organic Remediation Aromatics Nitoaromatics Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 7.478509639 7.469632151 7.242294487 7.434483276 7.105029457 7.678768789 7.159934082 7.29597134 7.136854319 38490069 pcaG Organic Remediation Aromatics Other aromatics marine alpha proteobacterium SE45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 7.21980662 7.166136054 7.160896421 6.873821954 7.191123634 7.64354901 7.553002606 7.057596055 7.541015216 158108539 TerD Metal Resistance Tellurium Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 7.329557581 7.777085348 8.018356632 8.129032762 7.51418605 7.895186146 7.832350811 7.490838435 7.987443339 26278808 narG Nitrogen Denitrification uncultured bacterium 7.533653901 7.405597481 7.008968596 7.543973352 7.315131908 7.170450293 7.507649414 73537443 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.571884647 7.627212305 7.272998315 7.167883844 7.08847321 7.585200027 7.333224899 6.993948468 6.912097268 116692228 sigma_70 Stress Sigma factors Burkholderia cenocepacia HI2424 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 7.781764908 7.83497907 7.781549945 7.715098666 8.090307546 8.071370278 8.284378584 7.950588394 8.122145013 67085911 TerC Metal Resistance Tellurium Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 7.64656997 7.315308025 7.065981353 7.078890491 7.313656589 7.405513105 7.278791661 73669020 nifH Nitrogen Nitrogen fixation Methanosarcina barkeri str. fusaro superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina barkeri; 7.660566493 7.3889309 7.169989897 6.91178834 6.712368083 77458530 xylA Carbon cycling Carbon degradation Hemicellulose Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.807989563 7.656084766 7.480364993 7.205239914 7.939856367 7.851200151 7.278048449 7.455967759 7.523456721 196254435 AceA Carbon cycling Carbon degradation others Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.041375942 7.582497538 7.199758782 7.252432621 7.338226309 7.179368552 114538302 pstB Stress Phosphate limitation Fulvimarina pelagi HTCC2506 7.278142956 7.062457859 7.480471007 7.099647446 6.75079266 7.740311457 7.107009926 7.02897788 238871271 glnA Stress Nitrogen limitation Edwardsiella ictaluri 93-146 7.961673045 7.654596757 7.621584306 7.661125802 8.01594218 7.991519375 7.741897869 7.716868352 7.690588856 224027951 AprA Sulphur adenylylsulfate reductase uncultured gamma proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.578239017 7.447891493 7.46482129 7.280554547 6.884168331 7.768783071 7.356716257 7.382760142 6.943514698 91223701 CopA Metal Resistance Copper Vibrio alginolyticus 12G01 7.611312801 7.792346104 7.734335959 6.969744557 7.373041033 7.474082051 222111387 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Diaphorobacter sp. TPSY superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax ebreus; 7.047082109 7.065301105 7.461558937 7.108517 6.856908067 260216796 katE Stress Oxygen stress Cronobacter turicensis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter; 7.471653806 7.566497654 7.718556965 7.734185632 7.822194743 7.888021319 7.836675517 7.481786108 7.861938981 207085175 ppk Phosphorus Phosphorus utilization Campylobacterales bacterium GD 1 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales; 7.017893272 7.037649769 6.949576934 165875658 nrfA Nitrogen Dissimilatory N reduction Actinobacillus pleuropneumoniae serovar 3 str. JL03 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus pleuropneumoniae; 7.684107693 7.668215171 7.57599833 7.501902873 7.787244616 7.935242001 7.889969459 7.531260671 7.807197131 124009230 pstC Stress Phosphate limitation Microscilla marina ATCC 23134 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Microscilla;species:Microscilla marina; 7.111455209 7.115589915 7.151712627 6.727231365 7.548825111 7.122320884 6.988400568 7.249369481 197088661 nrfA Nitrogen Dissimilatory N reduction Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 7.635282122 7.832223169 7.587623768 7.213023158 7.290272248 7.964211265 7.875733496 8.077752941 247537481 pstA Stress Phosphate limitation Dickeya zeae Ech1591 7.475451851 7.498915129 6.861876724 6.971383531 7.616804913 7.125449995 7.563515687 182412481 gyrB other category gyrB Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 8.22232422 7.914556394 7.989566545 7.636437222 7.676305691 7.856525675 7.396319707 7.456858572 145589271 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Polynucleobacter sp. QLW-P1DMWA-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 7.632463389 7.716799023 7.538095422 7.193032825 7.508994432 7.640978034 7.641158875 7.442153093 15075616 atzA Organic Remediation Herbicides related compound Sinorhizobium meliloti 7.849319873 7.979782241 7.999531641 7.928674437 7.972857651 7.970265792 8.079104857 8.148673117 8.052010817 256686405 obgE Stress Radiation stress Jonesia denitrificans DSM 20603 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 7.383000572 7.513590545 7.477191683 94499713 AceB Carbon cycling Carbon degradation others Oceanobacter sp. RED65 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Bermanella; 7.056570634 7.209160766 7.3773985 7.343032215 7.496774705 83649540 pilin virulence pilin Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 7.733641093 7.615025938 7.675526716 7.009001265 7.840853053 7.741844445 7.328777181 7.607720624 153890012 Catechol Organic Remediation Aromatics Other aromatics Opitutaceae bacterium TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 7.882489828 8.191134402 8.173661214 8.068142068 8.306685903 7.911618116 7.916443252 7.757396209 114307074 ZntA Metal Resistance Zinc Nitrosomonas eutropha C71 7.298323726 7.585365862 7.580656063 7.426069948 7.163588916 7.697816106 7.522243021 7.203596955 8.050083721 166865141 dsrA Sulphur sulfite reductase uncultured Desulfobacteraceae bacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae; 7.300644797 7.111362179 6.869383843 6.5079115 7.678703203 134052085 CopA Metal Resistance Copper Desulfotomaculum reducens MI-1 7.149978137 7.259344317 7.432615469 6.835773402 7.537141168 7.108448763 7.082880968 7.272822645 163803677 merP Metal Resistance Mercury Vibrio campbellii AND4 7.735570362 7.797282123 7.668178578 7.571100542 7.872678598 8.120831405 7.515958593 7.777747797 121609908 phn Organic Remediation Herbicides related compound Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 7.836074673 7.4481801 7.89271852 7.800052024 7.473058343 227479391 SMR_antibiotics Antibiotic resistance transporter Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 7.429335138 7.15841905 7.104380162 7.554837347 239926991 katE Stress Oxygen stress Streptomyces ghanaensis ATCC 14672 8.253230652 8.172663177 8.066806625 7.836237367 8.394508219 8.169373292 7.985823196 8.359242532 118021972 glucoamylase Carbon cycling Carbon degradation Starch Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 7.312606522 7.146902255 7.753118228 7.678786762 7.336432968 7.799154877 7.398997639 7.474041514 7.772963274 20142116 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.872149088 8.168953168 7.897147728 7.178741467 7.715209082 7.788688851 7.426457694 7.6005951 7.554670181 77380374 MFS_antibiotic Antibiotic resistance transporter Pseudomonas fluorescens Pf0-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.419443935 7.703508955 7.197451425 7.488760515 7.220071777 7.845005281 7.317705108 7.240996371 7.167514682 254517391 fnr Stress Oxygen stress gamma proteobacterium NOR5-3 7.547981566 8.006090176 7.978941894 7.69137612 7.753230731 7.972014155 7.758405686 7.433638479 110631282 nifH Nitrogen Nitrogen fixation uncultured soil bacterium superkingdom:Bacteria; 7.111654129 6.948688851 6.945075921 160899135 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.715003283 7.561408043 7.451979692 7.462049768 7.526294608 7.456898997 7.403983368 7.445204801 192361260 TerC Metal Resistance Tellurium Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 7.164933999 7.012581982 254981413 rubisco Carbon cycling Carbon fixation Nitrosomonas sp. AL212 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 7.140065973 7.099845834 7.434074048 7.165427989 7.087813803 7.267526869 87280980 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.666934261 7.708876567 7.42864482 7.344758014 7.313989837 7.723665521 7.23691682 7.254491268 7.317474588 121530504 ArsC Metal Resistance Arsenic Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 7.980628234 7.596671446 7.158171744 7.888242747 7.499869345 7.658665588 7.467400629 7.475658094 38640156 scaffold Bacteria phage STRUCTURAL Aeromonas phage Aeh1 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.082686293 7.483827036 7.455658507 7.179319798 7.556068316 7.715385988 7.578260081 7.731339972 133778540 endochitinase Carbon cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 7.005895187 6.96131694 211565147 cellobiase Carbon cycling Carbon degradation Cellulose Actinomyces naeslundii superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces; 7.530488015 7.511819447 7.473024804 6.976136674 7.121814459 7.446108118 7.428385009 6.92946294 7.42506427 192758417 helicase_P4alpha_type Bacteria phage REPLICATION Mycobacterium phage Predator order:Caudovirales;family:Siphoviridae; 7.438631438 7.333479519 169117862 mer Metal Resistance Mercury uncultured organism 9.145996804 9.080617815 8.955611475 32698473 nagG Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas xenophaga superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 7.253255094 6.802646424 91716858 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Shewanella denitrificans OS217 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella denitrificans; 7.523516719 7.697053877 7.721080515 7.517945652 7.797093291 7.813715068 7.84818567 7.957536778 7.779751838 152995850 nagG Organic Remediation Aromatics Aromatic carboxylic acid Marinomonas sp. MWYL1 7.566107327 7.461858423 7.437306413 7.315612905 7.800462684 7.768017907 7.543539953 7.666782315 7.636122647 157285630 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.03936117 7.288736143 7.750288594 7.840805338 7.094790077 7.254152908 7.346948424 77651828 CODH Carbon cycling Carbon fixation Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.601092374 7.440240926 77383793 endochitinase Carbon cycling Carbon degradation Chitin Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.675576367 7.473928842 7.673872111 7.992100123 7.621944948 8.0686568 7.732964333 8.061863615 261408695 pstA Stress Phosphate limitation Geobacillus sp. Y412MC10 7.07917823 7.011415133 77732596 nhh Organic Remediation Aromatics Nitoaromatics Rhodococcus opacus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7.808652409 7.50906737 7.192346016 6.875278321 7.567487016 7.513247681 7.001848513 7.307011652 118424445 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.237992476 7.34685347 7.436481155 6.885637669 7.707671372 227896758 ctsR Stress Protein stress Lactobacillus plantarum subsp. plantarum ATCC 14917 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus plantarum; 7.401707165 7.230489636 7.420527612 7.181993767 7.29896304 7.455900605 7.441200295 7.102756405 7.602533444 119391395 narG Nitrogen Denitrification uncultured bacterium 7.080942657 7.136738058 7.478603276 7.312960709 7.13736728 7.542408019 7.565840379 7.063619017 218134896 ChrA Metal Resistance Chromium Bacteroides pectinophilus ATCC 43243 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides pectinophilus; 6.973540183 6.739641375 7.196699171 6.900063154 6.643422108 7.430018784 193088451 sigma_24 Stress Sigma factors Chloroherpeton thalassium ATCC 35110 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chloroherpeton;species:Chloroherpeton thalassium; 7.540986904 7.582496753 7.422233417 6.686845919 7.098157064 7.718381244 7.070703126 7.479313855 7.466123886 119455770 sigma_70 Stress Sigma factors Lyngbya sp. PCC 8106 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Lyngbya; 7.843234326 7.651454436 7.764582379 8.118817096 8.004686014 7.683271324 7.772689552 146188535 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.122338522 7.134515735 6.96664166 7.352478046 7.025002282 6.705060744 15603449 sigma_32 Stress Sigma factors Pasteurella multocida subsp. multocida str. Pm70 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Pasteurella;species:Pasteurella multocida; 7.291778339 7.055446464 6.9543949 6.642267059 7.330891954 6.8701324 6.732002248 109290311 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.992289569 7.890872159 7.62436788 7.381935625 7.508799839 7.62375836 7.49354876 149198541 sigma_70 Stress Sigma factors Lentisphaera araneosa HTCC2155 superkingdom:Bacteria;phylum:Lentisphaerae;order:Lentisphaerales;family:Lentisphaeraceae;genus:Lentisphaera;species:Lentisphaera araneosa; 7.294059525 7.212178474 110632156 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.733647443 8.042035331 8.206417847 7.497476147 8.123925432 7.757160651 8.017201768 8.281193144 7.688320071 70704907 gyrB other category gyrB Acholeplasma vituli superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Acholeplasmatales;family:Acholeplasmataceae;genus:Acholeplasma; 7.256998732 6.944834487 145259288 dbdC Organic Remediation Aromatics Heterocyclic aromatics Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.651284369 7.33354612 6.945134809 7.174362766 7.503547265 6.977948271 7.601589566 152970671 mhpA Organic Remediation Aromatics Aromatic carboxylic acid Klebsiella pneumoniae subsp. pneumoniae MGH 78578 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 7.564224526 7.560892426 7.473878086 7.455890585 7.443529685 120556101 ChrA Metal Resistance Chromium Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 8.606461712 8.545290898 8.219224604 8.102471135 8.896596024 8.225163621 8.739901514 8.398866639 8.685794915 108743326 narI Stress Oxygen limitation Streptomyces kanamyceticus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7.750664976 7.73628011 7.618005478 7.480207713 7.766550961 7.888967832 7.773401447 7.879845771 7.739522243 113933417 CopA Metal Resistance Copper Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 7.665823035 7.556620729 7.234790651 7.593952955 7.702458526 7.96087771 7.677983451 7.699314739 68520670 FTHFS Carbon cycling Acetogenesis Shewanella baltica OS155 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 7.060008982 6.9787126 7.307204991 6.939429215 7.028251981 7.213045958 6.967456238 149805933 pilin virulence pilin Moritella sp. PE36 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Moritellaceae;genus:Moritella; 7.16044432 7.044039923 6.984463358 221089007 pcc Carbon cycling Carbon fixation Geobacillus sp. Y412MC61 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.728690017 7.599387348 7.300066875 7.460499091 7.204716724 7.763621846 254474479 sigma_24 Stress Sigma factors Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.64478486 7.814982007 7.795403143 7.879886101 7.791879513 7.61758705 7.78065445 8.019232739 7.888729816 68535556 sigma_24 Stress Sigma factors Corynebacterium jeikeium K411 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 7.825062073 7.871237763 7.972152013 7.293409986 7.889846445 7.636048031 7.707454155 8.095476732 7.610074363 35210333 gyrB other category gyrB Alicyclobacillus sp. MIH 332 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus; 7.333180114 7.313024665 7.1165672 7.437584281 121551867 pimF Organic Remediation Aromatics Aromatic carboxylic acid Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 7.532426616 7.602729998 7.544569956 7.564145011 7.547045421 7.731999421 7.368352159 7.457086112 257061937 amyA Carbon cycling Carbon degradation Starch Cyanothece sp. PCC 8802 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.067955298 7.44805997 7.466617259 7.05208891 7.082658204 7.700176122 7.245554995 7.365922751 7.231254425 154353947 ahpF Stress Oxygen stress Bacillus amyloliquefaciens FZB42 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 7.824129636 7.568774503 7.420364744 7.523170617 7.590308415 7.606835615 18034307 dsrA Sulphur sulfite reductase Desulfonatronum lacustre superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfonatronumaceae;genus:Desulfonatronum; 8.110310466 7.694593903 7.589730405 7.181595509 7.555498557 7.597831056 7.663383264 7.738063678 7.200021536 218549330 tutFDG Organic Remediation Aromatics BTEX and related aromatics Escherichia fergusonii ATCC 35469 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia fergusonii; 7.31674226 7.134747487 7.203533404 7.033254327 7.579770273 14210102 AceA Carbon cycling Carbon degradation others Pichia angusta superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Pichia; 7.4953433 7.225388905 7.569024773 7.653396647 7.143288004 6.954777136 7.051822932 7.570213829 156857703 APS_AprA Sulphur adenylylsulfate reductase uncultured bacterium 7.425396733 7.398707739 7.344921044 6.830881564 7.448122368 7.977541199 7.330449342 7.174003275 7.393000247 170719967 pcaG Organic Remediation Aromatics Other aromatics Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.285254425 7.009775666 6.750155315 7.266015303 118437978 pimF Organic Remediation Aromatics Aromatic carboxylic acid Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 7.481839453 7.396192685 7.468768025 7.349890023 7.326280939 7.72844913 7.677233167 7.841669681 196477318 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 7.678126302 7.641167936 7.490969875 7.28015638 7.76050641 7.537388859 7.55525201 7.825720161 119673097 dsrA Sulphur sulfite reductase Pyrobaculum islandicum DSM 4184 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum islandicum; 7.615603638 7.389857365 7.427494221 7.235101557 8.019923267 7.433644952 7.486943067 7.364692826 224371314 ahpF Stress Oxygen stress Desulfobacterium autotrophicum HRM2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium;species:Desulfobacterium autotrophicum; 7.389256328 7.278017389 7.274684778 6.94130414 7.547747613 7.623249723 7.293235279 7.353680041 165874785 norB Nitrogen Denitrification Azospirillum brasilense 8.234023583 8.0130449 8.316268956 7.978743885 8.334287697 7.978716052 8.417141637 7.732672757 116099449 fnr Stress Oxygen stress Lactobacillus brevis ATCC 367 7.352033823 7.102199269 46199401 alkK Organic Remediation Others Thermus thermophilus HB27 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 7.682517365 7.633752681 7.326417207 7.481979062 7.342024704 8.03980871 7.506052459 7.246181444 7.535737282 780711 nifH Nitrogen Nitrogen fixation unidentified marine eubacterium superkingdom:Bacteria; 7.597954591 7.578467605 7.882218814 7.672030623 8.008984318 7.545600901 7.502913038 7.592408405 32446678 cydB Stress Oxygen limitation Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 7.53129871 7.198664297 6.71708747 7.321398454 219676574 ureC Nitrogen Ammonification gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.099189518 7.097834011 7.322672564 7.305174067 7.127377653 7.250938057 7.330921116 7.653899007 114190439 BpH Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.699957016 7.33141919 7.317648011 7.011058986 7.360293971 6.953366616 7.058275876 7.093039558 238716971 AceB Carbon cycling Carbon degradation others Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 7.475840646 7.57448399 7.478522891 7.46619384 7.707304877 7.234736994 7.396483953 91784666 pcpE Organic Remediation Herbicides related compound Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.739151635 7.741184562 7.463257843 7.781041281 7.846882221 7.812804538 77976376 AceB Carbon cycling Carbon degradation others Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 7.113618585 7.26726091 7.58985379 7.299733501 7.123678792 7.533619654 7.258566963 7.553048452 7.558256351 112441476 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 7.740931187 7.459696588 7.500128809 7.312512039 7.912319916 266623903 MATE_antibiotic Antibiotic resistance transporter Clostridium hathewayi DSM 13479 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 7.41100169 7.269091313 7.414478025 7.103233763 7.397429754 7.846521714 7.649775833 7.329987878 7.410240654 99082995 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.38702885 7.299261752 7.421300535 6.843589326 7.537092475 7.362963125 7.373049092 111223847 nmoA Organic Remediation Aromatics Nitoaromatics Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 7.390903797 7.76666604 7.489767538 7.527942827 7.876470918 7.94433417 7.652450332 7.80206709 124261265 pheA Organic Remediation Aromatics Other aromatics Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 7.967212362 7.419962376 168993992 alkK Organic Remediation Others Lysinibacillus sphaericus C3-41 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Lysinibacillus;species:Lysinibacillus sphaericus; 7.900313265 7.771299761 7.932740089 7.366026911 7.984775279 7.682517016 7.86422242 7.778230316 7.371875913 121589665 hrcA Stress Heat shock Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 7.613760455 7.401311922 56476471 tutFDG Organic Remediation Aromatics BTEX and related aromatics Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 7.239759086 6.752692484 7.01581192 6.897250184 6.861055396 156532966 bglH Stress Glucose limitation Cronobacter sakazakii ATCC BAA-894 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 8.219633839 7.681776885 8.335486017 7.923112026 7.709503068 7.630959274 7.470994339 134293013 ophC Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 7.725293009 7.544890825 7.17065901 7.270627485 7.212152998 7.838969831 281422183 pap virulence adhesin Prevotella copri DSM 18205 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella copri; 8.126702452 7.480102027 7.666586435 7.883706531 7.926380277 7.995958673 7.720071185 7.413284796 7.543816982 224368281 hydrogenase Energy process Energy process Desulfobacterium autotrophicum HRM2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium;species:Desulfobacterium autotrophicum; 7.889946445 7.76193165 7.734845893 7.536999038 7.931422151 7.704283792 8.127809399 7.760062947 157011600 AprA Sulphur adenylylsulfate reductase uncultured bacterium 7.411265655 7.588906871 8.008437857 7.979739853 7.704466435 8.192101257 7.695356425 7.830440974 7.931703693 3378415 catechol_B Organic Remediation Aromatics Other aromatics Novosphingobium aromaticivorans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 7.279788964 7.226262236 6.923004571 7.138120255 7.441152351 7.041220088 7.345907993 7.067215383 213925046 TerD Metal Resistance Tellurium Pseudomonas syringae pv. tomato T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 7.085090084 7.127655133 7.050386245 6.620094891 6.859294421 7.394328084 120601770 cytochrome Energy process Energy process Desulfovibrio vulgaris subsp. vulgaris DP4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 7.600002543 7.819488676 7.862881751 7.18094291 7.826839758 7.776679217 7.791928505 7.77907794 7.790551959 114541863 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.800488608 7.896171157 8.189062492 8.314124731 7.851767034 7.897975691 7.764326348 7.652878223 7.776363669 89512850 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8.062051853 8.025173351 7.994440273 8.366752042 8.279423105 8.309996737 7.904108877 8.075278785 16119443 proX Stress Osmotic stress Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.735383286 7.626956655 7.598055648 7.403487408 7.593588288 7.684483376 106762197 phn Organic Remediation Herbicides related compound Psychromonas ingrahamii 37 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas;species:Psychromonas ingrahamii; 7.595434985 7.454237257 7.827245173 7.795487957 219847152 sigma_70 Stress Sigma factors Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 7.27707005 7.576864677 7.308258483 7.102044361 7.170598667 7.225145166 227538826 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Sphingobacterium spiritivorum ATCC 33300 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium;species:Sphingobacterium spiritivorum; 6.804872639 6.809972141 6.959807618 6.658434502 7.265477824 71370965 endochitinase Carbon cycling Carbon degradation Chitin Paracoccidioides brasiliensis superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides; 7.537079434 8.184603207 7.850369611 7.662042307 7.63001514 8.025856921 8.242031461 8.060318632 8.802790649 170938100 pcpA Organic Remediation Aromatics Chlorinated aromatics Cupriavidus taiwanensis 7.602086851 7.736878885 7.730332316 7.749881346 7.792617439 7.648396354 7.6119882 7.837001987 144906142 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.626754903 7.670491847 7.438550822 7.035513211 7.516177025 7.745659537 7.675575867 7.27079824 7.568428614 261878034 ahpC Stress Oxygen stress Selenomonas noxia ATCC 43541 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas noxia; 7.480446589 7.240130948 7.350876089 7.285239944 7.00402731 148356017 AceB Carbon cycling Carbon degradation others Bacillus licheniformis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.433362513 7.236188259 7.23213296 7.522958143 7.249791902 7.132600831 18034325 dsrA Sulphur sulfite reductase Desulfotomaculum alkaliphilum superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 7.588741465 7.815269203 7.395376733 7.227446428 7.247981525 7.766987384 7.636066975 7.332819701 169760745 CopA Metal Resistance Copper Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.125615978 8.365363134 198261813 cydA Stress Oxygen limitation gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.806010447 7.56915275 7.582794621 8.202812452 8.092937656 8.434706723 7.982953191 7.787219417 7.972383143 110283124 ArsC Metal Resistance Arsenic Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 7.924507106 7.773028963 7.629193703 7.008094952 7.574006039 7.697422086 7.273673051 7.383360887 114193905 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 8.188251323 7.571449706 7.744000872 7.861024979 7.615588913 7.757070724 7.491794399 7.810854706 94549834 ara Carbon cycling Carbon degradation Hemicellulose Acidobacteria bacterium Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 8.065830236 8.034123038 8.007700761 7.791445533 8.306874078 8.011911595 8.153664493 8.034484375 145296371 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium glutamicum R 7.630983293 7.349536235 7.486534597 211959297 HBH Organic Remediation Aromatics BTEX and related aromatics Pseudovibrio sp. JE062 8.406208201 7.958654338 7.924243562 8.301505451 8.177236927 7.993975606 8.462424345 8.424322022 8.018900497 118174222 tftH Organic Remediation Aromatics Chlorinated aromatics Mycobacterium smegmatis str. MC2 155 7.512831765 7.381067471 7.175533821 7.463642705 7.551075881 7.398385903 7.532736837 229496089 clpC Stress Protein stress Porphyromonas endodontalis ATCC 35406 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas;species:Porphyromonas endodontalis; 7.0511858 7.308805639 7.099426079 224414716 bphF1 Organic Remediation Aromatics Polycyclic aromatics Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 7.500492334 7.344363712 6.989265878 7.257021027 157374642 pstB Stress Phosphate limitation Shewanella sediminis HAW-EB3 7.245735967 7.206686662 226242566 CDH Carbon cycling Carbon degradation Cellulose Rhodococcus opacus B4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 7.582716209 7.343551124 7.485081577 7.172518708 7.424703067 257219053 contractile_tail_sheath_protein Bacteria phage STRUCTURAL Deftia phage phiW-14 order:Caudovirales;family:Myoviridae; 7.827128863 7.934290421 7.807680061 6.927175605 7.636189554 7.369225966 7.543110871 7.468290327 7.72357984 261338656 hly virulence hemolysin Bifidobacterium gallicum DSM 20093 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 8.071806184 7.703531776 7.435570043 7.618874784 7.437562472 7.804164693 124510288 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Shewanella putrefaciens 200 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella putrefaciens; 6.647376813 7.562200332 111022000 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7.465069615 7.688341208 7.246601639 6.942582661 7.325133513 7.699186353 7.661787037 7.473826756 7.762452156 86142026 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Flavobacterium sp. MED217 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Leeuwenhoekiella;species:Leeuwenhoekiella blandensis; 7.245777511 7.001357738 7.181183883 6.89372739 6.858175914 118027753 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.219572417 7.783797404 7.629548772 7.699779973 8.058143571 8.190141267 7.848143773 7.472062735 8.304689836 18651922 rubisco Carbon cycling Carbon fixation Magnetospirillum magnetotacticum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum; 7.237925975 7.18277471 6.944261299 7.293195014 6.948378494 7.777407454 7.33034786 7.173474544 86159424 amyA Carbon cycling Carbon degradation Starch Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 7.394793083 7.494673895 7.427932357 7.18564595 7.43058441 7.755631273 7.84142193 7.56684818 7.471991432 114738228 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 7.448568048 7.151261795 37527640 type_III_secretion virulence secretion Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 7.597589567 7.263092389 7.313500826 7.350098923 7.213051157 7.637655972 7.435530352 7.203257538 194290754 pimF Organic Remediation Aromatics Aromatic carboxylic acid Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 7.447227985 7.809621629 7.619039929 8.048282354 8.405372536 8.341460336 8.026827675 8.137377834 8.432907989 55978310 aoxB Metal Resistance Arsenic Thermus thermophilus HB8 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 7.599170507 7.586035463 7.373169408 7.516069833 7.538159495 7.810900676 7.817547584 7.584918809 7.505666756 146188554 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.948459509 7.783831901 7.644324624 7.547585057 7.686222494 7.749880994 7.890714266 7.693871561 7.017224765 84516990 pstB Stress Phosphate limitation Loktanella vestfoldensis SKA53 7.479942485 7.450819967 7.543451765 7.157986894 7.297895817 7.33912586 7.579380705 7.244426937 7.535961785 241763954 pstB Stress Phosphate limitation Acidovorax delafieldii 2AN 8.188112996 8.125805689 8.131291561 7.692752848 8.293751198 7.819243354 8.164597672 8.199316571 7.552083099 126660290 TerD Metal Resistance Tellurium Cyanothece sp. CCY0110 7.381195585 7.391920029 7.311749412 7.285425693 7.226192945 7.033296472 7.132667966 161331183 katE Stress Oxygen stress Shewanella benthica KT99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella benthica; 7.13351588 7.215267931 7.233325914 158336363 chnB Organic Remediation Other Hydrocarbons Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;genus:Acaryochloris;species:Acaryochloris marina; 7.241407858 6.954452518 6.932526703 32895232 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.034703625 6.912440753 6.890813434 7.041167912 6.728747183 27901573 gyrB other category gyrB Rhodococcus jostii superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7.483737931 7.634824695 7.745973711 7.673388033 8.056610198 7.905643021 7.92376497 8.027952732 7.912127996 252127038 sigma_24 Stress Sigma factors Corynebacterium matruchotii ATCC 14266 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium matruchotii; 7.737211961 7.529634869 7.552115369 7.071649839 7.859278646 7.648068217 7.373066643 7.585043165 7.516548485 84511389 Arylest Organic Remediation Aromatics Other aromatics Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 7.333045152 7.681132703 7.165870913 7.627893864 220712058 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.367463902 7.595532694 7.403981493 6.843547305 7.4301443 7.509780192 7.264263678 7.299752636 7.353560926 88779770 sigma_32 Stress Sigma factors Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 6.907902149 7.194108886 7.40025447 7.214568397 7.447008062 7.657063808 61611869 catB Organic Remediation Aromatics BTEX and related aromatics Delftia tsuruhatensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia; 7.849041285 7.686217614 7.592408837 7.904285221 7.885363065 8.269815791 8.094336155 8.37049363 77546797 sigma_24 Stress Sigma factors Pelobacter carbinolicus DSM 2380 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter carbinolicus; 7.796767013 7.71688739 7.700404177 7.37159653 7.293193107 7.675094807 7.133134344 7.50040682 66769700 oxyR Stress Oxygen stress Xanthomonas campestris pv. campestris str. 8004 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 7.559274572 8.282222068 8.208959842 8.117492703 8.098883541 8.126514199 8.135401055 7.819777976 260402672 ctsR Stress Protein stress Dialister invisus DSM 15470 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Dialister;species:Dialister invisus; 6.916606133 6.943098276 6.809106755 7.209034626 7.019843893 7.4230932 168701602 catB Organic Remediation Aromatics BTEX and related aromatics Gemmata obscuriglobus UQM 2246 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata;species:Gemmata obscuriglobus; 8.40529824 8.41915379 7.992526489 7.805935842 8.390212052 8.260766449 8.093269082 8.145903921 83309951 pimF Organic Remediation Aromatics Aromatic carboxylic acid Magnetospirillum magneticum AMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 7.515118789 7.654565918 7.769454961 8.010722939 7.871365128 7.740385991 7.901752126 8.089284837 85689268 glnA Stress Nitrogen limitation Erythrobacter sp. NAP1 7.339105998 7.37460529 7.518755669 7.278044607 7.276138706 7.751861683 89897841 ahpC Stress Oxygen stress Chlamydophila felis Fe/C-56 superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Chlamydiaceae;genus:Chlamydophila;species:Chlamydophila felis; 7.459341811 7.349292939 7.420099021 7.179677673 7.03574556 7.689636226 7.192524982 7.198817969 7.615262175 140845750 oxyR Stress Oxygen stress Corynebacterium glutamicum R superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 7.300792406 7.111339819 148265428 TehB Metal Resistance Tellurium Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 8.209029982 8.066133026 7.715755929 7.589276984 7.640646246 7.833391016 7.68751241 7.496418524 7.865018763 4894892 gyrB other category gyrB Photobacterium damselae subsp. damselae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium damselae; 7.246269436 7.516414865 7.11175268 6.777058686 7.686615573 7.027552723 7.024458444 50542704 rubisco Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.706356104 7.578101878 7.88968545 7.66677688 7.975233067 7.637676078 7.713901401 258565327 endochitinase Carbon cycling Carbon degradation Chitin Uncinocarpus reesii 1704 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 7.351118589 7.141932042 7.119845447 6.704463145 7.55635518 7.002065197 6.917166351 254819499 pstS Stress Phosphate limitation Mycobacterium intracellulare ATCC 13950 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 7.744951075 7.300937737 7.835577363 7.915695587 7.663818996 8.046118906 8.250252491 7.983127872 194536156 atzA Organic Remediation Herbicides related compound Vibrio cholerae RC385 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 7.193307516 7.229127165 7.376335806 6.99813503 7.472539919 125718052 gyrB other category gyrB Streptococcus sanguinis SK36 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus sanguinis; 7.098014515 7.263884515 7.373440528 6.946688225 7.098298592 7.161753905 169643673 mnp Carbon cycling Carbon degradation Lignin Phlebia sp. MG60 7.790767318 7.520318048 7.426584432 7.541728967 7.300304297 7.830764718 7.490966161 7.604256103 218219103 CopA Metal Resistance Copper Mitsuokella multacida DSM 20544 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Mitsuokella;species:Mitsuokella multacida; 7.327014472 7.674758062 7.683287883 7.263294169 7.229692846 7.71754196 7.413371849 7.761608514 7.465044804 145322746 Catechol Organic Remediation Aromatics Other aromatics Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 8.31426503 7.824809502 7.528493092 7.966842886 7.789558908 8.148428476 7.952347575 7.783087416 7.846298288 163261115 MFS_antibiotic Antibiotic resistance transporter Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 7.487444183 7.171717407 7.192863085 7.201961143 7.577764529 126389110 SilA Metal Resistance Silver Acinetobacter baumannii ATCC 17978 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 7.285875142 7.104570215 110282807 ahpC Stress Oxygen stress Cytophaga hutchinsonii ATCC 33406 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Cytophaga;species:Cytophaga hutchinsonii; 7.340183449 6.856415949 7.139065242 6.570341502 7.251260441 148545281 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.290292748 7.562412811 7.831827506 7.280749901 7.791365546 7.397480208 7.697369013 212686821 AceA Carbon cycling Carbon degradation others Providencia alcalifaciens DSM 30120 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 7.355048664 6.773730202 7.318269442 119718781 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 7.738067174 7.628144452 7.594698373 7.47572465 8.006543114 7.800414451 7.85867671 7.669533851 7.921410556 212010404 sigma_38 Stress Sigma factors Coxiella burnetii CbuG_Q212 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Coxiellaceae;genus:Coxiella;species:Coxiella burnetii; 7.962447445 7.970311147 7.848596891 8.07847207 7.807712444 7.627211037 7.687315723 7.743747527 261282294 narI Stress Oxygen limitation Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.749206167 7.301534475 7.342120886 7.123059748 6.866130627 7.720699332 239834707 katE Stress Oxygen stress Ochrobactrum intermedium LMG 3301 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 7.246508091 7.404962869 7.032484406 6.836466773 7.426905717 187727850 Arylest Organic Remediation Aromatics Other aromatics Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 7.643507637 7.751383235 7.487373199 7.369823071 7.724973826 8.16006017 7.881298515 7.616182854 7.550919854 146345881 ahpC Stress Oxygen stress Clostridium kluyveri DSM 555 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium kluyveri; 7.14858434 7.318966678 145235215 phenol_oxidase Carbon cycling Carbon degradation Lignin Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8.241581648 8.068118766 8.326336735 7.408973188 8.402128149 7.843066411 7.922232518 8.03998847 8.116366234 62424988 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Brevibacterium linens BL2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium linens; 7.057195935 7.477574058 7.803869785 6.987403772 7.556858115 7.21668766 7.262802821 157149181 xylA Carbon cycling Carbon degradation Hemicellulose Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 7.326793108 7.182554493 7.422170533 6.763569342 6.834715057 7.510707116 7.109939126 7.290833943 7.459674335 148259936 NADH_quinone_oxidoreductase Bioleaching Electron transport Acidiphilium cryptum JF-5 7.392329782 7.044241529 221532963 catB Organic Remediation Aromatics BTEX and related aromatics Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 7.079970439 7.432118474 6.920831578 7.36895482 6.952398614 7.038907876 170027491 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.274513232 7.383179568 7.597425299 7.374307455 7.258643556 7.818232998 7.22588302 7.42517015 7.572910984 256779587 SMR_antibiotics Antibiotic resistance transporter Streptomyces hygroscopicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces hygroscopicus; 8.219705511 7.819043924 7.477136307 7.674949066 8.317219054 8.03640631 8.120136948 8.226020317 8.306923951 225200692 SMR_antibiotics Antibiotic resistance transporter Proteus penneri ATCC 35198 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus penneri; 7.423229342 6.95943869 256779405 hrcA Stress Heat shock Streptomyces hygroscopicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces hygroscopicus; 7.144558752 7.21259021 7.240946097 6.967811321 7.522303116 157862741 dsrA Sulphur sulfite reductase uncultured prokaryote 7.203035766 7.141262376 6.863627539 7.049717549 6.956249302 7.605688683 7.240348543 6.886289588 7.416099599 119391623 narG Nitrogen Denitrification uncultured bacterium 7.641574572 7.746584064 7.846500952 7.457864744 7.723679496 7.245206483 7.963934293 7.365081388 218516428 nahF Organic Remediation Aromatics Polycyclic aromatics Rhizobium etli 8C-3 7.730210579 7.491923908 7.315120635 7.253409546 7.658390345 211958784 ahpC Stress Oxygen stress Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 7.621773916 7.919360766 7.696507648 7.676509075 8.018530642 83596088 CopA Metal Resistance Copper uncultured marine bacterium Ant4D5 superkingdom:Bacteria; 8.30527825 8.590784137 7.641488113 8.141878154 8.203487374 8.593704671 7.619337753 167628960 sigma_24 Stress Sigma factors Heliobacterium modesticaldum Ice1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Heliobacteriaceae;genus:Heliobacterium;species:Heliobacterium modesticaldum; 7.407561854 7.47449427 7.327274913 7.406058508 7.369178051 7.464439893 39726088 endoglucanase Carbon cycling Carbon degradation Cellulose Trichoderma sp. C-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Trichoderma; 7.402556747 7.446900379 7.233410938 7.399347745 7.402248729 7.707398332 7.39855287 7.289551155 7.328920498 66964726 FTHFS Carbon cycling Acetogenesis Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.381466526 7.415935169 7.283815085 6.772665777 7.569166564 7.677124064 7.636486748 7.571115742 7.460227531 118432585 pstB Stress Phosphate limitation Oenococcus oeni ATCC BAA-1163 7.38818425 7.456050579 7.293930563 6.718692549 7.310390414 148258466 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.710522599 8.065651552 7.886781688 8.091473254 7.742819178 7.839335559 7.787957953 7.862706859 28971830 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas sp. P2 7.768342396 7.507142914 7.536457512 7.178231686 7.589185799 7.851786198 7.656281475 7.540531121 7.522853185 73540031 sigma_32 Stress Sigma factors Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.516095314 7.711180497 7.319114075 7.053448113 7.219303996 7.360420609 7.441320715 209516864 tfdA Organic Remediation Aromatics Chlorinated aromatics Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.24808589 7.599346643 7.961929033 7.709147648 7.702002868 7.972964852 7.682923921 7.540646349 7.696734679 227420838 APS_AprA Sulphur adenylylsulfate reductase Desulfohalobium retbaense DSM 5692 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium;species:Desulfohalobium retbaense; 7.454491188 7.509878151 7.457875338 7.514894428 7.641676952 7.788581547 7.123833908 7.070323942 7.237687269 237807395 arcA Stress Oxygen limitation Tolumonas auensis DSM 9187 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Tolumonas;species:Tolumonas auensis; 7.58009442 7.575456615 7.229635566 7.12989544 7.230531554 7.703025873 7.160471022 7.474944109 237846137 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.167420256 7.257451109 7.384206615 7.236951124 7.111080412 7.158436133 40748277 phytase Phosphorus Phosphorus utilization Citrobacter freundii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter; 7.340032288 7.131957391 7.125478931 6.75227119 7.415978725 87311648 sigma_24 Stress Sigma factors Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 6.957723932 7.244231234 7.200965999 7.142167103 7.346869533 157324260 gyrB other category gyrB Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 8.605608792 8.426507193 8.204320258 8.678791678 8.445877314 8.25335393 8.47931364 8.548062017 8.275167215 92119097 iro virulence Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 7.715559034 7.961233752 8.006429158 7.726242432 7.843774698 8.389630706 7.533872293 7.478961972 7.719360104 149358934 pilin virulence pilin Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 7.310492686 7.026945147 255716890 katE Stress Oxygen stress Lachancea thermotolerans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Lachancea;species:Lachancea thermotolerans; 8.287660767 8.122004837 7.924263194 7.876507005 7.788081337 7.741701477 7.517469027 7.694530359 115384538 BADH Organic Remediation Aromatics Other aromatics Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.379299975 7.191387695 7.762794938 7.488518029 7.267815027 7.858735565 7.30887321 7.305128736 7.360964945 55295400 endoglucanase Carbon cycling Carbon degradation Cellulose Irpex lacteus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;genus:Irpex; 7.431100443 7.530062407 7.263572572 7.617058681 7.794460726 7.780171571 7.88765666 7.556221656 162452783 sigma_24 Stress Sigma factors Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 7.740788644 7.821424194 7.724579363 7.781155935 7.404377062 7.80128159 7.635025406 7.935195959 7.613820519 168484634 tutFDG Organic Remediation Aromatics BTEX and related aromatics Streptococcus pneumoniae CDC1873-00 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus pneumoniae; 8.233389054 8.083094041 7.852491444 7.867928567 8.15832054 8.305748815 8.207636379 8.16902188 240102930 pstB Stress Phosphate limitation Thermococcus gammatolerans EJ3 7.814781445 7.294369432 7.431914831 7.38172249 7.857996093 7.449794417 7.313292932 36785326 nitro Organic Remediation Others Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 7.313547956 7.524200927 7.51241645 7.198725299 7.762228914 7.36635872 146273165 glnA Stress Nitrogen limitation Pelotomaculum thermopropionicum SI 7.167353266 7.889453245 7.684634647 7.491796719 7.569433057 7.562333155 7.627812388 7.735648065 49532327 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 7.24374874 6.836285754 7.182862934 7.033699473 6.738603354 7.392030882 6.99562599 6.982532664 7.232317005 40218020 phenol_oxidase Carbon cycling Carbon degradation Lignin Auricularia auricula-judae superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Auriculariales;family:Auriculariaceae;genus:Auricularia; 7.898803205 7.502356004 7.336248423 7.667571439 8.024501302 8.217417252 7.914852593 7.839998027 7.882850827 262334913 pstA Stress Phosphate limitation Rhodothermus marinus DSM 4252 7.90447606 7.420227405 7.434283486 7.710613439 7.390070286 7.359442698 7.61611855 84385322 AceA Carbon cycling Carbon degradation others Vibrio splendidus 12B01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 6.98657383 6.981465994 7.084695863 6.812210364 30911085 endochitinase Carbon cycling Carbon degradation Chitin Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 7.190082066 7.290413564 7.674037628 7.259006799 7.675242657 7.868380705 7.588445372 7.483157641 8.059388322 146283179 cytochrome Energy process Energy process Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 7.238527006 7.303178375 7.109154067 7.769728559 7.461070998 7.331860765 149925973 pstC Stress Phosphate limitation Limnobacter sp. MED105 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 7.237363796 7.279388926 7.164163851 7.448938991 6.992115311 7.06964987 7.29933602 118040157 nhh Organic Remediation Aromatics Nitoaromatics Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.29090996 6.967574976 89901528 ChrA Metal Resistance Chromium Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 7.437208136 7.263270845 7.053299524 6.866206986 6.976420451 7.556316371 7.100934194 7.339967612 7.154298389 89895861 Ni_Fe_hydrogenase Energy process Energy process Desulfitobacterium hafniense Y51 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 7.076701566 7.091708269 7.026226916 6.883267541 7.420073704 222086481 glnA Stress Nitrogen limitation Agrobacterium radiobacter K84 7.669921313 7.91080938 7.534360247 7.235723182 7.697280916 7.950743657 7.807646015 7.366358942 7.570365424 259030630 glnA Stress Nitrogen limitation Mesorhizobium opportunistum WSM2075 7.498216823 7.487565061 7.401782593 7.582184957 7.482860197 146402083 NADH_ubiquinone_oxidoreductase Bioleaching Electron transport Acidiphilium cryptum JF-5 8.347192207 8.254518419 8.247666834 7.479820454 8.383863889 8.118182204 8.018469916 7.827373883 8.275737149 227351220 fnr Stress Oxygen stress Lactobacillus vaginalis ATCC 49540 7.749928064 7.612483983 7.499413893 7.360672978 7.491646214 8.019205089 7.324867214 7.227817891 7.38446531 159172434 cap virulence capsule Vibrio sp. AND4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.445495111 7.747991842 7.662709564 7.592606161 7.695858508 7.898382472 7.549523171 7.785643064 146279806 obgE Stress Radiation stress Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 8.024702089 7.665673844 7.788964423 7.831533779 7.594758861 7.599319912 27376476 cellobiase Carbon cycling Carbon degradation Cellulose Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.498326278 7.833341546 7.394802503 7.371276368 8.071971319 119963470 nmoA Organic Remediation Aromatics Nitoaromatics Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 7.188787255 6.997495728 7.078814833 7.032196969 7.551830137 167646650 MFS_antibiotic Antibiotic resistance transporter Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.29245142 7.933996765 7.903406405 7.361746061 7.925395091 7.73212868 7.792459882 7.822749965 7.671673245 76557884 pimF Organic Remediation Aromatics Aromatic carboxylic acid Natronomonas pharaonis DSM 2160 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natronomonas;species:Natronomonas pharaonis; 7.6107429 7.344738013 7.561621605 7.752329652 7.923793851 7.093550786 7.447241631 7.494824139 118007913 TerC Metal Resistance Tellurium Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 7.245532325 6.864198425 126387772 catB Organic Remediation Aromatics BTEX and related aromatics Acinetobacter baumannii ATCC 17978 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 10.92539237 7.186933296 7.448804665 7.698441577 7.144008142 196233466 ChrA Metal Resistance Chromium Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 7.847065922 7.612067786 7.752641646 7.880910669 7.637888499 7.521286176 223017101 obgE Stress Radiation stress Actinobacillus minor 202 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus minor; 7.789682219 7.407260181 7.65187889 7.372425318 7.700010082 7.549220746 7.656526345 261365996 narI Stress Oxygen limitation Neisseria mucosa ATCC 25996 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria mucosa; 7.40445053 7.277955498 6.942581289 7.067170825 6.786857859 7.524323089 7.184418368 7.392240647 13814892 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Sulfolobus solfataricus P2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus;species:Sulfolobus solfataricus; 7.921453428 7.646188617 7.962187921 8.059720481 8.009178465 7.92326017 7.900268598 194346586 gyrB other category gyrB Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 7.52948834 7.684050735 7.930417313 7.181210869 7.838673693 7.563576885 7.44014538 148567463 nifH Nitrogen Nitrogen fixation Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 7.486121084 7.329899714 7.482162753 7.01478704 7.458009018 7.932723103 7.317657683 7.154668917 247546442 pstA Stress Phosphate limitation Paenibacillus sp. JDR-2 7.133004743 7.137342983 211959170 pstC Stress Phosphate limitation Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 7.467191881 7.759518295 8.064266749 7.505530525 7.548976355 7.994687015 7.479685059 7.760466163 7.582897188 195364358 nahA Organic Remediation Aromatics Polycyclic aromatics Mycobacterium vanbaalenii PYR-1 7.660592099 7.516874565 7.718770292 7.275934585 7.735959609 7.559810103 7.579204407 7.763025242 118052716 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni KF-1 7.76834601 7.774811395 7.946238885 7.497536242 8.019616684 8.07034547 8.189230499 8.316909014 8.208819023 146192311 gdh Nitrogen Ammonification Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.420094664 8.017444117 7.854144536 7.809596387 8.052625243 7.844265312 8.036118956 7.632270256 7.311551996 238486372 iro virulence Aspergillus flavus NRRL3357 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus flavus; 6.812376339 7.190069958 188533789 catB Organic Remediation Aromatics BTEX and related aromatics Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 7.475477705 7.229266521 7.192922894 7.368155246 7.605870874 255062999 phoB Stress Phosphate limitation Nitrosomonas sp. AL212 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 7.393526579 7.485736584 7.219515426 7.153458937 7.314516428 7.518365477 7.443964019 7.318875461 7.051407383 212672020 katA Stress Oxygen stress Desulfovibrio piger ATCC 29098 8.702257332 8.604946371 8.340120049 7.620788833 8.203131846 8.10870858 7.840133803 158441158 cda Carbon cycling Carbon degradation Starch Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 7.356327933 7.45117332 7.713184433 7.598724832 7.581429368 8.163318712 7.9631988 7.920646581 162147527 sigma_24 Stress Sigma factors Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 7.782874379 7.302860528 7.242925957 6.62716185 6.988378351 7.311941718 92435589 nmoA Organic Remediation Aromatics Nitoaromatics Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8.375194059 8.208044837 8.303009079 7.509204462 8.203480813 8.467308654 8.012180116 7.903623997 8.043899755 262311992 Mex Antibiotic resistance transporter Acinetobacter junii SH205 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter junii; 7.473611291 6.957572808 90023234 sigma_32 Stress Sigma factors Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 7.024706399 7.076042336 262282926 nplT Carbon cycling Carbon degradation Starch Streptococcus sp. 2_1_36FAA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 7.210600267 7.001577729 7.219982639 6.86433192 7.123789327 7.524413798 7.193143163 7.26222956 217988558 CopA Metal Resistance Copper Bacteroides eggerthii DSM 20697 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides eggerthii; 7.094220667 6.888253751 7.074504859 20808241 amyA Carbon cycling Carbon degradation Starch Thermoanaerobacter tengcongensis MB4 6.98876055 7.040384581 196166672 BchY other category chlorophyllide reductase uncultured bacterium superkingdom:Bacteria; 7.054368726 6.98609387 7.323736098 7.087058048 7.015058044 7.50508898 86358679 FTHFS Carbon cycling Acetogenesis Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.376258897 7.326326179 7.169789109 6.921998572 7.11500769 7.472591401 7.116149168 7.364761971 167624177 AceA Carbon cycling Carbon degradation others Shewanella halifaxensis HAW-EB4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella halifaxensis; 7.394828824 7.358366733 7.033419354 269956779 sigma_70 Stress Sigma factors Xylanimonas cellulosilytica DSM 15894 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Xylanimonas;species:Xylanimonas cellulosilytica; 7.465131837 8.153723191 7.943078894 7.778474143 8.28916221 7.835809227 7.286180751 7.624930587 118047879 cda Carbon cycling Carbon degradation Starch Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 7.432090677 7.227124795 7.13667884 7.212317507 6.942574736 7.748077729 7.1934029 6.881914753 170691175 pcaG Organic Remediation Aromatics Other aromatics Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 7.963419671 7.651127989 7.536275776 6.989785988 7.461446832 7.506740291 7.62753594 7.360397656 7.500711058 150027122 oxyR Stress Oxygen stress Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 7.686737768 7.707548165 7.439725847 7.366221061 7.692028499 7.734268567 7.683517216 7.535058499 145701326 cytochrome_b Bioleaching Electron transport Metallosphaera sedula DSM 5348 7.355388869 7.270785265 7.06240306 227076409 proV Stress Osmotic stress Corynebacterium accolens ATCC 49725 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium accolens; 7.644202789 7.627926181 7.680287274 7.451451932 7.892236789 7.845261266 7.856215388 7.807690472 7.859847368 154254010 hrcA Stress Heat shock Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 7.141829415 7.251643627 7.591793798 7.805118939 7.519499683 8.089132376 7.673821774 7.562943781 7.858315739 145208518 terminal_quinol_oxidase Bioleaching Electron transport Acidithiobacillus caldus 6.819357405 6.940561615 7.104905782 6.777637737 7.416578278 238702581 iuc virulence aerobactin Yersinia aldovae ATCC 35236 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia aldovae; 7.493938521 7.422662159 7.31912711 7.410400004 7.009879533 226945439 Mex Antibiotic resistance transporter Azotobacter vinelandii DJ superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 7.835599623 7.513792097 7.413482227 7.636171347 7.484261885 7.743268276 7.234350298 7.496245582 119767066 aclB Carbon cycling Carbon fixation Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 7.699528887 7.940318247 7.79161578 7.714873074 8.407767877 8.273361635 8.213282432 7.932675037 256741297 obgE Stress Radiation stress Thiomonas intermedia K12 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas;species:Thiomonas intermedia; 7.209991189 7.540303873 89900440 hrcA Stress Heat shock Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 7.350483077 7.496504013 7.384826093 7.3151662 7.693232618 7.544057979 170289340 pstB Stress Phosphate limitation Thermotoga sp. RQ2 7.85159002 7.663582076 7.578879268 7.813542987 7.872478768 8.141291353 7.844625897 171059462 CopA Metal Resistance Copper Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 7.334400191 7.131029407 6.832859313 7.616165218 84508804 glnA Stress Nitrogen limitation Loktanella vestfoldensis SKA53 8.915356128 8.721562683 8.549830865 8.297630155 8.790759993 8.296727384 8.522068054 8.575379004 7.899645538 74038384 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.689867681 7.074821983 7.151395936 7.446242417 7.084635993 7.094962453 7.124335375 172057120 glnA Stress Nitrogen limitation Exiguobacterium sibiricum 255-15 8.060706842 8.089415827 8.089534226 7.99410121 7.849004055 7.771602462 7.81871732 7.726217492 7.496458365 82801425 alkB Organic Remediation Other Hydrocarbons bacterium alkW34 superkingdom:Bacteria; 7.435463985 7.611515611 7.553357882 7.11903962 7.849463511 7.778485665 7.307284436 7.586946138 7.704727065 91681266 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.36425424 8.433235016 8.224464393 7.794039631 8.317322842 7.983262211 8.336155093 8.483830969 8.066670436 169259305 ChrA Metal Resistance Chromium Anaerofustis stercorihominis DSM 17244 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Anaerofustis;species:Anaerofustis stercorihominis; 8.070497108 8.069383132 8.075675986 7.834215568 7.763576123 8.492167056 7.522863294 7.729036308 167071428 mer Metal Resistance Mercury Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.59578618 7.610513482 7.790166101 7.583407955 7.912876629 8.005750654 8.18262626 8.070262948 7.837812582 145595896 pcc Carbon cycling Carbon fixation Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 7.566381509 6.933226927 7.859279695 8.215811635 7.634810057 7.763516601 7.552050008 7.537409034 13475724 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 7.425382925 7.131626055 7.03369054 7.026717409 6.849434636 94313422 iro virulence Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 7.237057701 7.327222667 7.756436246 7.312075078 7.428544754 8.22836778 7.333816436 7.626826274 7.745223252 156112933 katE Stress Oxygen stress Vanderwaltozyma polyspora DSM 70294 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Vanderwaltozyma;species:Vanderwaltozyma polyspora; 7.290768824 7.330870102 251855510 sigma_70 Stress Sigma factors Prevotella melaninogenica ATCC 25845 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella melaninogenica; 7.716650325 7.849132081 7.619892112 7.34926884 7.852676945 7.599474622 7.756142851 7.648527396 7.727008351 258512819 pstB Stress Phosphate limitation Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 7.65547712 7.640504197 7.592606161 7.773085728 7.784504265 7.542110652 7.799267714 12002188 arsB Metal Resistance Arsenic IncN plasmid R46 7.847887537 7.42637088 7.313041168 7.13871542 7.186298845 7.583590238 172035052 ahpC Stress Oxygen stress Cyanothece sp. ATCC 51142 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.292619408 8.578337368 8.633046304 8.056286715 8.25038359 8.040960248 8.400887986 8.295541272 8.462414702 84702545 oxyR Stress Oxygen stress Parvularcula bermudensis HTCC2503 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 7.991383525 8.008703784 7.84608944 7.929469597 7.970959207 8.088772842 8.089886282 7.996888264 7.825565256 151302305 APS_AprA Sulphur adenylylsulfate reductase Desulforhopalus vacuolatus 7.537653662 7.356736958 7.856896968 7.210431041 7.518426926 46981102 nirS Nitrogen Denitrification Marinobacter sp. BP45 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 7.659783448 7.491688095 8.195042639 7.683693101 7.79837909 7.866408344 7.817056371 7.865082377 40809646 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira; 8.141089127 7.795971302 7.35430092 7.978062857 7.526303279 7.616711596 7.745447463 114771603 gyrB other category gyrB alpha proteobacterium HTCC2255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.206879685 7.165302095 7.136486169 6.808666147 7.279161705 262340154 pstB Stress Phosphate limitation Vibrio sp. Ex25 6.989536396 7.540382068 167750552 Al Metal Resistance Aluminum Eubacterium siraeum DSM 15702 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium siraeum; 8.334945867 7.990915006 8.332149618 7.795516311 8.551133687 7.923677337 8.277821738 8.260064788 92113231 TerC Metal Resistance Tellurium Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 7.53144427 7.805548303 7.498287465 7.180619896 7.584731059 7.666633666 7.695288662 7.229141969 7.673134154 119775363 cytochrome Energy process Energy process Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 7.584043151 7.198373296 7.343691391 7.619779105 7.30316076 7.356016387 7.32023906 7.432645057 4456714 mnp Carbon cycling Carbon degradation Lignin Phanerochaete chrysosporium 7.378092803 7.447843623 7.524196809 6.957954912 7.086884063 7.620115723 57020767 pstB Stress Phosphate limitation Campylobacter coli RM2228 7.301735735 7.180385374 6.910530168 121588488 nifH Nitrogen Nitrogen fixation Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 8.446702695 8.270480703 8.04667645 8.355529068 8.434922822 8.40851816 8.25478069 8.010720418 8.27531761 187927577 pilin virulence pilin Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8.110230216 7.809027338 7.677909209 7.471285906 8.404792021 7.618515973 7.54701342 7.767075271 239807266 narI Stress Oxygen limitation Geobacillus sp. WCH70 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.267871992 6.687070897 63081964 nosZ Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 7.858561099 7.709444371 7.568729492 71383794 nasA Nitrogen Assimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.784557488 7.877340317 7.685317764 8.258825784 7.898421452 7.859532603 8.143246019 7.67127294 260431192 Tet Antibiotic resistance other Silicibacter lacuscaerulensis ITI-1157 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria lacuscaerulensis; 7.323064713 7.41565908 7.509987535 7.714151618 7.294210106 157095103 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 8.155190754 8.04606535 7.21270367 7.762464694 7.693967874 7.844639311 145588638 CopA Metal Resistance Copper Polynucleobacter sp. QLW-P1DMWA-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 7.466402238 7.336014069 7.372501452 7.170588476 7.440174318 7.368833167 7.266625908 7.267601333 121552910 pstA Stress Phosphate limitation Verminephrobacter eiseniae EF01-2 7.902800336 7.970237475 7.791469184 7.886706947 7.839331815 8.068195434 7.466212152 7.344628089 145591452 APS_AprA Sulphur adenylylsulfate reductase Pyrobaculum arsenaticum DSM 13514 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum arsenaticum; 9.418828884 9.357783246 9.4229641 9.512469124 9.198113562 9.663276 9.54678452 9.673984819 9.535301354 90416749 oxyR Stress Oxygen stress marine gamma proteobacterium HTCC2207 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.50273446 7.944294108 7.308686405 7.290051401 7.880529531 7.631126839 6.965293086 7.389885861 7.731190208 149378458 ahpC Stress Oxygen stress Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 7.721595288 7.715050089 7.181298404 7.391562295 7.297374106 7.715321014 148568005 sigma_24 Stress Sigma factors Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 7.664594919 7.61386126 7.355293947 7.877106152 261281590 cap virulence capsule Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8.285681128 8.225812437 8.081566952 8.138667903 8.38725435 8.46576389 8.314919624 8.262223259 12667652 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium UMTRAdsr610-21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 7.574912826 7.155775599 7.184462026 7.116580317 7.879141517 13249543 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.268002593 7.080162613 7.455331684 11066196 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Aeromonas hydrophila superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas; 7.200145473 7.258066622 7.711041144 7.982801894 7.085127493 8.053872234 7.223331475 7.460440091 7.819446225 119776153 cytochrome Energy process Energy process Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 7.396723125 7.769375599 7.99758295 7.923106966 7.819893279 7.989853184 7.901361992 8.18569244 8.23188244 229324941 hrcA Stress Heat shock Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 7.374857428 7.091911248 7.186112607 149182983 katE Stress Oxygen stress Bacillus sp. SG-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.225956747 6.979749866 7.201497095 6.815656786 7.471927554 6.986967974 7.296289277 77964737 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.505108731 7.221434996 7.024291995 6.961982053 7.11875209 7.214831418 7.088315504 7.223093252 215459499 chnB Organic Remediation Other Hydrocarbons Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 7.111592922 7.12504945 6.931769145 157404581 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 8.219954326 7.700104387 7.75193273 7.663300182 7.541525593 7.929185196 8.086828432 224026778 sigma_24 Stress Sigma factors Bacteroides coprophilus DSM 18228 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides coprophilus; 7.430142575 7.609094869 7.298725291 7.264704464 7.800891483 254497428 AceB Carbon cycling Carbon degradation others Legionella drancourtii LLAP12 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella;species:Legionella drancourtii; 7.995415277 8.154837161 7.834216878 7.377327305 7.94216464 7.856286321 7.777688665 7.599275335 7.931159494 73763078 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.15307966 7.379933392 6.685808832 7.662306695 27353631 pcc Carbon cycling Carbon fixation Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.391550099 7.657832277 7.436725808 7.778845659 7.943239456 8.254185188 8.017720231 7.732445942 7.567429928 121551754 glnA Stress Nitrogen limitation Verminephrobacter eiseniae EF01-2 6.974200991 7.190828892 7.02920036 6.968666018 6.614864126 7.538051334 7.154288899 7.078120753 7.347651941 39935123 czcC Metal Resistance "Cadmium,Cobalt,Zinc" Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.578512896 7.419768196 7.7641982 7.569045806 7.867645731 7.42526545 7.81410298 283950883 sigma_24 Stress Sigma factors Conexibacter woesei DSM 14684 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Conexibacteraceae;genus:Conexibacter;species:Conexibacter woesei; 9.20463764 9.217476071 9.185859068 8.704823024 9.439996757 169006798 amyA Carbon cycling Carbon degradation Starch Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.476154032 7.916482336 7.499699433 7.408847502 7.455109885 7.20637338 7.049855734 7.898989002 238759165 iuc virulence aerobactin Yersinia aldovae ATCC 35236 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia aldovae; 7.360687592 7.370702589 7.105185219 6.850704215 7.42754862 61224801 lip Carbon cycling Carbon degradation Lignin Pleurotus pulmonarius 7.436931221 7.184759168 7.431487858 7.337632216 7.580049633 139003648 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 6.856085172 7.227399148 7.021278306 151355 mdlB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.514664478 7.488155421 7.327746673 7.017517759 7.643360207 14024045 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 7.456685881 7.456531252 7.785344354 7.726652653 7.320653562 8.286880654 7.387493719 7.573554364 7.157660421 226939452 pstC Stress Phosphate limitation Laribacter hongkongensis HLHK9 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Laribacter;species:Laribacter hongkongensis; 8.041256375 7.664442006 7.759468586 7.486727862 8.125046223 7.78378131 7.552527528 7.926717396 7.844253579 119461662 ureC Nitrogen Ammonification Nodularia spumigena CCY9414 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nodularia;species:Nodularia spumigena; 7.219766889 7.21681316 7.11356351 6.650198569 6.975421239 7.042910749 121555741 pimF Organic Remediation Aromatics Aromatic carboxylic acid Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 7.749807374 7.948923687 8.201916053 8.225467549 7.565897018 108760112 pimF Organic Remediation Aromatics Aromatic carboxylic acid Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 8.202727462 8.030042155 7.753821566 7.860527038 8.186901678 8.29932597 8.150036109 7.863627952 8.005126461 148847730 silP Metal Resistance Silver Planctomyces maris DSM 8797 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces maris; 7.003711932 6.998627234 6.822911049 7.521868727 6.89711771 6.924376419 7.344990697 156452021 CadA Metal Resistance Cadmium Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 7.209056561 7.60245411 7.927082943 7.457228954 7.673195801 7.701552333 7.178245909 7.871222217 7.351023419 82791413 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 7.605584652 7.801222146 7.760971631 7.684305711 119458982 ArsC Metal Resistance Arsenic marine gamma proteobacterium HTCC2080 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.457799641 7.423429913 7.441710249 7.231158884 7.749578938 7.416705083 7.453950934 192822621 amoA Nitrogen Nitrification superkingdom:Bacteria; 7.364599809 7.448195115 7.631019673 6.937888161 7.072541841 7.635759137 7.184282038 7.518221148 7.159082044 148978074 ahpF Stress Oxygen stress Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 7.087466282 7.319027443 6.893128147 104783726 pcaG Organic Remediation Aromatics Other aromatics Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 6.999023537 7.102036546 7.145328765 7.294763135 7.38727808 91780395 chnB Organic Remediation Other Hydrocarbons Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.385610477 7.275423997 7.181232425 7.543104476 93358328 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 7.468702146 7.541452667 7.115575626 7.38168627 13625838 gdh Nitrogen Ammonification Peptoniphilus asaccharolyticus superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Peptoniphilus; 7.42406599 7.322067481 7.200829407 6.918279149 6.861105044 7.613398773 7.05203548 7.025448045 7.453930563 197935871 DNA_polymerase_type_I Bacteria phage REPLICATION Ralstonia phage RSB1 order:Caudovirales;family:Podoviridae;genus:phiKMV-like viruses; 7.756755944 7.849018192 7.626843558 7.842470181 7.760118504 7.858932672 111612839 CopA Metal Resistance Copper Verminephrobacter eiseniae EF01-2 8.516095194 8.423375853 8.236171332 8.552372114 8.739920723 153890722 CopA Metal Resistance Copper Opitutaceae bacterium TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 8.805418516 8.678771837 226973589 T4_recomb_endonuclease Bacteria phage REPLICATION Shigella phage phiSboM-AG3 order:Caudovirales;family:Myoviridae; 8.419266043 8.475460418 8.508529052 7.953183944 8.59426142 8.19370579 8.282553128 8.509581628 269966228 endochitinase Carbon cycling Carbon degradation Chitin Vibrio alginolyticus 40B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 6.942062775 6.815233313 6.948571146 6.931163787 6.759102236 242281247 glnA Stress Nitrogen limitation Desulfovibrio salexigens DSM 2638 7.210037061 6.856670172 196178724 pstB Stress Phosphate limitation Microcoleus chthonoplastes PCC 7420 7.506381471 7.590501618 7.362008161 7.192774776 7.085850161 7.762724475 7.46962799 7.096778501 7.623463875 52081856 CopA Metal Resistance Copper Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 8.04201823 7.88186711 8.191842888 7.35178602 8.272221036 7.88098292 7.983168658 8.284001179 8.049456075 262352200 sigma_70 Stress Sigma factors Vibrio sp. RC586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.356188454 7.279443628 6.834736719 262221378 AceB Carbon cycling Carbon degradation others Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;species:Grimontia hollisae; 7.049997466 7.326549274 7.191953281 218717685 AceA Carbon cycling Carbon degradation others Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 8.625029152 8.394319452 8.298459058 7.999389665 7.858284296 8.23588268 8.49144514 8.311867811 118703956 vanA Carbon cycling Carbon degradation Others Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 7.560219717 7.700499875 8.071272875 7.601336963 7.799616417 7.791235843 7.557983527 7.828220764 7.534216898 160897575 fnr Stress Oxygen stress Delftia acidovorans SPH-1 7.92354296 7.145269021 7.216192581 7.426467294 7.57716267 7.543337126 83634150 napA Nitrogen Dissimilatory N reduction Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 7.653646143 7.336458624 7.350726367 6.970323082 7.546338422 73538695 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.422661634 7.389134117 7.609111861 7.476900953 7.236635707 7.747329674 126714547 nhh Organic Remediation Aromatics Nitoaromatics Roseobacter sp. CCS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.967353737 7.785040449 7.336578512 7.37087503 7.336054501 7.75277741 7.385278952 7.313661931 109633015 nirS Nitrogen Denitrification Marinobacter sp. CG158052 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 7.554566868 7.614653223 7.466709619 7.790202521 150403296 atzA Organic Remediation Herbicides related compound Methanococcus maripaludis C7 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanococcaceae;genus:Methanococcus;species:Methanococcus maripaludis; 7.389394248 7.272548049 183221027 alkK Organic Remediation Others Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira biflexa; 7.827912607 7.563354951 7.521408288 7.771977819 7.698803745 7.810846313 7.479893509 7.236585441 7.516772305 167571901 ChrA Metal Resistance Chromium Burkholderia oklahomensis C6786 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia oklahomensis; 7.501263442 7.606962296 7.386372502 7.095591758 7.222371589 7.287970512 7.440367493 7.448818621 148531854 nplT Carbon cycling Carbon degradation Starch Lactobacillus reuteri DSM 20016 7.622240382 7.81918422 7.963971741 7.743185037 7.60396767 8.000256327 7.698778868 7.969719984 7.730627346 83577481 silC Metal Resistance Silver Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 7.63362309 7.544325421 7.574899739 7.591708834 7.584612132 7.679401888 7.808696733 7.60136833 7.421583518 157914134 sigma_24 Stress Sigma factors Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 8.03487862 7.855458298 7.77219948 7.321254699 7.942778149 7.904282311 7.833044485 7.746748531 46399563 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Candidatus Protochlamydia amoebophila UWE25 superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Parachlamydiaceae;genus:Candidatus Protochlamydia;species:Candidatus Protochlamydia amoebophila; 7.043020388 7.481873956 7.151520746 6.924085724 7.108225421 7.314868856 222442519 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus capitis; 7.432358915 7.45715315 7.193117156 6.960614089 7.151526181 151302155 APS_AprB Sulphur adenylylsulfate reductase Desulfovibrio sp. X 7.26770955 6.940295495 7.312511736 119898265 xylJ Organic Remediation Aromatics BTEX and related aromatics Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8.053932676 8.149256517 7.901295195 7.981969392 8.214518218 8.016349347 8.454370245 8.289917762 8.292536247 603237 gyrB other category gyrB superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Mycoplasmatales;family:Mycoplasmataceae;genus:Mycoplasma; 7.265814317 7.548025762 7.195175263 7.255256151 6.976812094 7.230406131 7.384668067 7.227430594 254515828 sigma_32 Stress Sigma factors gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.910677361 7.827230662 8.110187953 8.20909724 7.843996163 7.447470501 7.824522029 7.73382768 148254144 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.936020486 8.031384614 7.796006804 8.234978922 8.114781215 7.936163218 7.882126188 238927171 opuE Stress Osmotic stress Selenomonas flueggei ATCC 43531 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas flueggei; 7.266449366 7.050788279 7.593097824 6.839045363 7.655602566 7.054672276 7.029406535 157848788 sigma_32 Stress Sigma factors Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 7.416331125 7.384313885 7.292703464 6.837791477 7.428968789 7.342555091 7.339093381 7.250505837 189499810 ahpC Stress Oxygen stress Chlorobium phaeobacteroides BS1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 7.733002399 7.485823637 7.163665929 6.834289621 7.622317438 7.400359964 7.158693945 7.077537089 256036336 katE Stress Oxygen stress Chitinophaga pinensis DSM 2588 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 8.227004124 8.13597081 7.438933275 7.274352312 7.625749508 7.754960929 7.606462169 7.27003952 7.375397587 212714444 pulA Carbon cycling Carbon degradation Starch Bifidobacterium pseudocatenulatum DSM 20438 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium pseudocatenulatum; 8.225382536 7.925434471 7.551351587 7.912450406 8.158283592 8.073242617 7.698892277 7.834917291 7.46177027 33414859 UvsW Bacteria phage REPLICATION Bacteriophage Aeh1 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.156683661 7.071454487 7.08788732 6.78815394 7.274697524 7.43040436 7.174201456 7.73468707 46409951 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.334812736 8.245107242 8.06056633 7.985341325 7.878985054 8.260701777 8.053654947 8.042048286 163854559 pcaG Organic Remediation Aromatics Other aromatics Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 7.433472046 7.205948982 7.447930863 7.495014516 6.827301456 262356606 Mex Antibiotic resistance transporter Bacteroides sp. 2_1_22 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 7.546139132 7.527410154 7.199472788 7.173754083 7.083389816 3157620 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 7.222426643 7.167732004 7.297381462 6.879188736 6.869765969 7.583885434 6.836031597 7.074680444 6.971815435 39578121 CODH Carbon cycling Carbon fixation uncultured proteobacterium superkingdom:Bacteria;phylum:Proteobacteria; 7.855203867 7.75825005 7.559870208 7.202398856 7.395970089 7.705490022 7.39598966 7.372578531 7.331601633 212538203 amyA Carbon cycling Carbon degradation Starch Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.442388637 6.852941636 7.253457732 7.022554405 6.789095224 21320167 pcaG Organic Remediation Aromatics Other aromatics Acinetobacter lwoffii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 7.560411979 7.39027278 7.276044228 7.002853348 6.923021776 7.49039164 84511657 glnA Stress Nitrogen limitation Loktanella vestfoldensis SKA53 7.754841769 7.791411355 7.676787891 7.431599334 7.476822661 7.947177554 7.796509573 7.6214833 7.32937894 52352367 glnA Stress Nitrogen limitation uncultured archaeon GZfos23H7 7.745626577 7.920421036 7.665827727 7.849171299 8.399190998 8.240091553 8.12458854 8.304373498 134290397 ChrA Metal Resistance Chromium Ochrobactrum tritici superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum; 7.991386664 8.207313039 7.997905675 7.540818331 7.543078327 7.609771407 7.694730185 7.57941474 19554164 CadA Metal Resistance Cadmium Corynebacterium glutamicum ATCC 13032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 8.015990832 8.075248267 8.100582754 7.449783182 8.14704797 7.798115994 7.841843377 8.194058265 7.554985348 222099694 xylA Carbon cycling Carbon degradation Hemicellulose Thermotoga neapolitana DSM 4359 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga;species:Thermotoga neapolitana; 8.12105044 7.899352455 7.660555279 7.514845217 7.949672684 7.849695876 7.574896845 7.537017696 7.755113274 77454720 pstC Stress Phosphate limitation Rhodococcus erythropolis PR4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 7.92288503 7.994914819 7.99817042 7.9066004 7.419793169 7.662591541 268590638 ureC Nitrogen Ammonification Providencia rettgeri DSM 1131 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rettgeri; 7.139203337 7.184196588 56461442 ahpC Stress Oxygen stress Idiomarina loihiensis L2TR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina loihiensis; 7.131549303 6.940837907 7.253830777 7.077458741 7.215883748 87281193 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.103626461 8.090546822 8.010302361 7.492511567 8.133126893 8.172903093 8.045028717 8.152571859 134293265 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 7.614940759 7.581426693 7.594411477 7.360850946 7.578079602 7.719166152 7.607983501 7.142944334 7.436216906 109452545 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.909557778 8.294677282 7.725638432 7.82260595 7.981877376 8.028930734 7.881797964 7.795089005 7.739364912 83654711 ChrA Metal Resistance Chromium Burkholderia thailandensis E264 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 7.535452861 7.348051436 7.217435176 7.723797161 7.220398665 7.38097335 206678075 dehH Organic Remediation Chlorinated solvents Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.34047824 7.174110885 6.997196094 7.42327126 170722070 glnA Stress Nitrogen limitation Pseudomonas putida W619 7.720147817 7.721918046 7.954403476 7.887561591 7.888503899 7.955508099 8.204784405 8.271481715 8.010259503 15789980 dmsA Organic Remediation Others Halobacterium sp. NRC-1 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halobacterium;species:Halobacterium salinarum; 7.388638568 7.498724496 7.542749167 7.379137533 7.619687473 7.410954402 7.634257724 209401806 narG Nitrogen Denitrification uncultured bacterium 7.445489196 7.487941693 7.649352284 7.344244523 7.492694081 8.029342678 7.613404808 7.390219012 7.561643636 219815973 ppk Phosphorus Phosphorus utilization uncultured bacterium fCS1 superkingdom:Bacteria; 7.597124021 7.216129075 7.336769301 7.31933573 7.882406575 7.45816165 7.577461495 7.467756603 7.274105843 190151416 integrase_tyrosine Bacteria phage REPLICATION Streptococcus phage PH15 order:Caudovirales;family:Siphoviridae; 7.655758369 7.566967721 7.706627294 7.356334536 7.044896506 7.734789285 7.94337128 126460996 glnA Stress Nitrogen limitation Rhodobacter sphaeroides ATCC 17029 7.344331065 7.307390649 7.399110192 7.10019583 4836661 cbb Bioleaching Carbon fixation Acidithiobacillus ferrooxidans 7.311187836 7.42732037 94471181 narG Nitrogen Denitrification uncultured bacterium 7.343496472 7.476853207 7.391340069 7.140082646 7.422448313 7.147018456 7.334446621 184196298 nitA Organic Remediation Aromatics Other aromatics Burkholderia phymatum STM815 7.196319485 7.044003288 6.925546744 6.940889261 7.212016093 7.632509046 7.201011613 6.939451229 7.16619661 32455829 atzB Organic Remediation Herbicides related compound Pseudomonas sp. ADP superkingdom:Bacteria;phylum:Proteobacteria; 7.610887732 7.5256696 7.524949166 7.376332994 7.547326364 7.832544568 7.539085215 7.690297801 85711146 ZntA Metal Resistance Zinc Idiomarina baltica OS145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina baltica; 8.624192446 8.843890296 8.552164249 8.348900199 8.854784413 8.83638356 8.600809714 8.900380883 146277983 cytochrome Energy process Energy process Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 8.131626282 7.726649806 7.301726425 7.887748009 7.707087203 8.052593102 7.805181967 8.059562828 7.363125604 227833688 obgE Stress Radiation stress Corynebacterium aurimucosum ATCC 700975 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium aurimucosum; 7.489186739 7.56983533 7.05573408 7.65292522 7.539983291 7.55189811 7.373702211 227216961 ctsR Stress Protein stress Anaerococcus tetradius ATCC 35098 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Anaerococcus;species:Anaerococcus tetradius; 7.651451252 7.510393584 7.267503844 157082765 narJ Stress Oxygen limitation Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 7.193140293 7.139661507 6.672301209 7.085789405 238791028 pap virulence adhesin Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 8.287072571 8.137641735 7.81492161 7.933618798 8.349752502 8.100477461 8.385852466 8.008494924 8.380143916 196231235 CopA Metal Resistance Copper Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 7.215707799 7.125341966 7.681055281 7.671231282 7.148882356 125975458 fnr Stress Oxygen stress Clostridium thermocellum ATCC 27405 7.482933197 7.053732257 7.200336916 7.030365795 6.74821718 74276799 dmsA Organic Remediation Others Actinobacillus succinogenes 130Z superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus succinogenes; 7.436860203 7.149747929 6.686812123 7.375900562 146304069 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Metallosphaera sedula DSM 5348 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Metallosphaera;species:Metallosphaera sedula; 7.38056982 7.141458908 167593614 sigma_24 Stress Sigma factors Heliobacterium modesticaldum Ice1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Heliobacteriaceae;genus:Heliobacterium;species:Heliobacterium modesticaldum; 7.090246398 7.090446425 87306900 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 7.260176628 7.283193698 7.340244768 156055520 phenol_oxidase Carbon cycling Carbon degradation Lignin Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 7.428656555 7.07956052 2258313 mmoX Carbon cycling Methane Methane oxidation uncultured peat bog bacterium 24 superkingdom:Bacteria; 7.439678906 7.429941851 7.345465126 6.94073197 7.208217768 7.993902037 7.307787638 7.005427171 7.408278084 156869637 fnr Stress Oxygen stress Clostridium leptum DSM 753 7.484403576 7.340891262 7.000055109 6.963802332 7.485729548 7.639765614 7.792095809 7.79267171 7.317045982 256823309 phoB Stress Phosphate limitation Kangiella koreensis DSM 16069 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Kangiella;species:Kangiella koreensis; 7.493677151 7.636732121 7.218763239 7.437115902 7.549259592 7.634120106 70727592 ahpF Stress Oxygen stress Staphylococcus haemolyticus JCSC1435 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus haemolyticus; 7.126557811 7.147184997 6.888139488 157911568 CopA Metal Resistance Copper Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 8.16055859 7.955758695 7.761229601 7.41978487 8.126275498 7.995971475 7.877474762 8.085489993 7.880010578 46124205 nitA Organic Remediation Aromatics Other aromatics Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 7.122372449 7.575976184 7.3738425 7.314885913 7.797471164 7.407035327 7.321328603 7.679811403 262173163 pstC Stress Phosphate limitation Vibrio mimicus MB-451 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 7.487606476 7.616545571 7.868873863 7.835544846 7.44987391 114777117 pstB Stress Phosphate limitation Mariprofundus ferrooxydans PV-1 7.035057566 7.286649966 7.420814108 7.42108288 7.673167639 7.483421676 7.099558278 6.891312936 7.591637162 51245734 pstA Stress Phosphate limitation Desulfotalea psychrophila LSv54 7.249059169 7.008775291 7.361979115 94427811 sigma_70 Stress Sigma factors Oceanobacter sp. RED65 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Bermanella; 6.914924015 7.389298483 83954867 ahpC Stress Oxygen stress Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 7.580386212 7.541910607 7.614619693 7.224060663 7.916484664 157846040 sigma_24 Stress Sigma factors Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 7.827489114 7.835336382 7.934591846 7.621793141 8.214275766 7.32704221 8.115269313 7.875551744 8.015157249 255009196 fnr Stress Oxygen stress Bacteroides fragilis 3_1_12 6.794115441 7.335307181 120607861 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 8.294536677 8.116602602 8.214987551 7.867101943 8.382976655 7.698277113 7.984448191 7.935259675 8.393740828 227902088 pstB Stress Phosphate limitation Finegoldia magna ATCC 53516 7.398595991 7.054189645 7.492342575 7.308210086 6.790856038 7.40664053 7.230535499 7.119353712 94549530 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Acidobacteria bacterium Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 7.83298902 7.754888119 7.811462625 7.859049207 8.192402829 8.027574471 8.20652521 7.56145182 8.366112601 16272510 gyrB other category gyrB Haemophilus influenzae Rd KW20 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus influenzae; 7.772751076 7.747991842 7.513153486 7.259908936 7.404990628 7.741433735 8.026289063 85688043 pimF Organic Remediation Aromatics Aromatic carboxylic acid Erythrobacter sp. NAP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 8.022224415 7.807592524 7.415927495 7.565029968 7.724043369 8.079193995 7.709460297 7.489813172 7.541768594 50725020 arhA Organic Remediation Aromatics Heterocyclic aromatics Sphingomonas sp. A4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 7.650447452 7.631049322 7.351237296 7.323432218 7.651914543 7.758462354 7.518614505 7.561220309 7.827649295 222438849 pstB Stress Phosphate limitation Labrenzia alexandrii DFL-11 7.549209095 7.071190583 6.962460919 7.119940107 7.534241243 7.404544546 7.269427479 77378477 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.484255693 7.413245613 7.170377735 7.108138545 7.001797224 84043027 pcaG Organic Remediation Aromatics Other aromatics uncultured bacterium 7.266860515 7.589246183 7.25907019 6.937660294 7.353668156 7.535400039 7.553165052 7.293508078 7.463567859 118001131 bclA Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.625182336 7.330600216 6.999883666 7.052911352 7.467972288 94312093 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 7.549454983 7.338638237 7.5928543 7.965614554 7.805485703 7.555642644 7.882233662 7.792388002 218359155 PobA Organic Remediation Aromatics Aromatic carboxylic acid Escherichia fergusonii 7.223797431 7.237404415 6.790969287 7.506182662 62468092 bco Organic Remediation Aromatics Aromatic carboxylic acid uncultured bacterium superkingdom:Bacteria; 7.995257359 7.678561079 7.56936331 7.614095829 7.275569177 7.764938311 7.69193827 7.667882402 45524 ara Carbon cycling Carbon degradation Hemicellulose Cellvibrio japonicus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio; 7.309395027 7.102720671 154154495 alkJ Organic Remediation Other Hydrocarbons Parvibaculum lavamentivorans DS-1 7.32129358 7.113208873 7.099201895 7.227767816 6.908785252 7.067387453 7.210443423 171996533 iro virulence Burkholderia ambifaria MC40-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 7.803316228 7.874213247 8.12418989 7.470167007 7.926120967 7.74785583 8.049951375 126704447 Catechol Organic Remediation Aromatics Other aromatics Rhodobacterales bacterium HTCC2150 7.409266533 6.973205852 7.176280425 6.922912891 6.961292484 7.236375249 192764382 narG Nitrogen Denitrification uncultured bacterium 9.614626108 9.5245352 9.509515222 151280437 pimF Organic Remediation Aromatics Aromatic carboxylic acid Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 7.29105222 7.304640706 7.525402617 7.157160349 7.522510311 7.716706535 7.64681578 7.654261015 7.621111835 241775727 oxyR Stress Oxygen stress Allochromatium vinosum DSM 180 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 7.159075184 7.106948097 7.276156652 6.995468673 7.501591151 255270994 amyA Carbon cycling Carbon degradation Starch Thermoanaerobacter mathranii subsp. mathranii str. A3 7.574009916 7.94514578 7.680241593 7.684426517 7.405520471 7.928181315 7.343896348 7.618257198 7.693500332 82568133 gyrB other category gyrB Laceyella putida superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Thermoactinomycetaceae;genus:Laceyella; 7.157519654 7.088751376 7.013288646 7.323109443 109700710 exaA Organic Remediation Chlorinated solvents Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 6.964124958 7.103682083 6.781587923 7.262587046 270731522 sigma_24 Stress Sigma factors Frankia sp. EuI1c superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 7.654228986 7.561345999 7.611499664 7.729654401 7.889646989 8.037549992 8.113668823 7.797057052 7.632312758 145569856 napA Nitrogen Dissimilatory N reduction Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 7.5281849 7.319479779 7.632217971 7.439998328 7.727792019 7.885203372 8.082700152 8.047217184 7.853591022 82747710 ppx Phosphorus Phosphorus utilization Clostridium beijerincki NCIMB 8052 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium beijerinckii; 7.045729964 7.039121894 7.464837001 7.458049315 90569444 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.513655678 7.745223637 8.594928627 7.55806491 8.175648805 7.980991673 8.600783105 7.774644928 149806107 pstB Stress Phosphate limitation Moritella sp. PE36 7.614247881 6.957900394 7.063215346 6.99600623 7.26049365 7.389961523 86169523 dnaK Stress Heat shock Weissella kandleri 7.199687863 7.206886467 7.230192471 6.908409713 7.45744614 7648481 pulA Carbon cycling Carbon degradation Starch Arthrobacter sp. Q36 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.347121058 7.391649537 6.791111365 7.259137596 7.429079719 219692456 MATE_antibiotic Antibiotic resistance transporter Haemophilus parasuis SH0165 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus parasuis; 7.208734331 7.024560234 6.959754599 6.894610292 7.328380693 29466080 norB Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.057729553 7.606060032 7.52005352 7.566947041 7.824558666 7.991896147 7.66262184 7.569136433 150855415 tftH Organic Remediation Aromatics Chlorinated aromatics Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 7.323551954 7.172737999 7.47268809 6.982697729 7.527975293 7.576295751 7.411112891 7.305233422 42523317 ChrA Metal Resistance Chromium Bdellovibrio bacteriovorus HD100 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 7.268060945 7.073677021 7.686097355 7.478433442 7.327190242 7.39791846 114307974 obgE Stress Radiation stress Nitrosomonas eutropha C91 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas eutropha; 7.235960728 7.540782568 7.283386356 7.168618057 7.461898732 145248906 chnB Organic Remediation Other Hydrocarbons Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.357981005 7.005432849 7.201091351 7.199474773 7.532481912 56478098 alkK Organic Remediation Others Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 7.375111662 7.42196896 7.20350362 7.128925886 7.76714557 7.400883987 7.261975548 149359472 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 8.088029086 7.653198884 7.337145063 7.723553978 7.769387473 7.914646128 7.520294841 7.441183663 7.319800781 146404064 P450 Energy process Energy process Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.688040405 7.737252013 7.905798494 7.647269171 8.30660529 7.748837644 7.722421317 7.523546673 169184999 xylA Carbon cycling Carbon degradation Hemicellulose Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 6.845484073 6.873852089 6.989850354 6.791588179 6.752815341 28852779 pcaG Organic Remediation Aromatics Other aromatics Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 7.221308875 7.350507616 7.746668916 7.688922998 7.425472612 8.003824151 7.334811847 7.393681325 7.767182434 198269188 SMR_antibiotics Antibiotic resistance transporter Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 7.500958477 7.449546807 7.428473553 7.092503465 7.38569752 7.757012147 218271359 atzA Organic Remediation Herbicides related compound Roseburia intestinalis L1-82 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia intestinalis; 7.038408545 7.116891179 7.158035257 7.013079743 7.524395955 7.444765214 7.046674971 6.906923325 209874714 sigma_24 Stress Sigma factors Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 7.421672578 7.254879652 7.054664509 6.871558559 7.210121746 7.654074581 51338948 phtA Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.067592395 7.950009436 7.838208507 7.577823209 8.355133089 7.62593763 8.125633326 8.090736175 8.402787685 123444339 gyrB other category gyrB Yersinia enterocolitica subsp. enterocolitica 8081 7.650117911 7.506950266 7.205793136 7.441143229 7.090518331 7.699962474 7.389970868 7.20821316 255692215 iuc virulence aerobactin Bacteroides finegoldii DSM 17565 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides finegoldii; 7.986556515 8.211500734 7.960489967 7.695171946 8.142497964 8.166955475 8.412499109 8.221636863 8.18739328 157960153 cytochrome Energy process Energy process Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 8.00025579 7.853240026 7.577090156 7.547751748 7.808807319 7.917734449 7.697221944 7.707050825 7.448666461 86741382 SMR_antibiotics Antibiotic resistance transporter Frankia sp. CcI3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 7.537674181 7.50029202 7.58845578 7.402370124 7.771957638 7.74910479 7.791191848 7.999580664 255057447 fnr Stress Oxygen stress Geobacter sp. M18 8.416790508 7.546321404 7.604099708 7.894460088 7.764295819 7.784360501 7.859194816 7.68472184 254480510 ppk Phosphorus Phosphorus utilization marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.191465188 7.014982185 6.879114477 6.734066195 7.029165868 150838995 sigma_24 Stress Sigma factors Marinomonas sp. MWYL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 7.309820465 7.492400296 7.25298185 6.984676017 7.34610875 7.163086343 6.964772034 122090231 CopA Metal Resistance Copper Yersinia enterocolitica subsp. enterocolitica 8081 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 8.404661788 7.908709695 7.959906597 7.292045747 7.939031099 7.685911861 7.876983681 7.807998056 7.732087438 223585842 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.30970421 7.094524492 6.932660721 6.678580472 7.474839038 218355606 ppx Phosphorus Phosphorus utilization Escherichia fergusonii ATCC 35469 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia fergusonii; 7.677951098 7.521166517 7.616690415 7.795304693 7.516574997 7.647189765 157963521 pimF Organic Remediation Aromatics Aromatic carboxylic acid Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 7.921553908 6.779547606 7.326713039 7.227885838 7.5638641 7.590303019 7.470334213 6.751638439 81096556 CopA Metal Resistance Copper Streptococcus suis 89/1591 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus suis; 7.299732033 7.795979878 99036682 PobA Organic Remediation Aromatics Aromatic carboxylic acid Silicibacter sp. TM1040 7.245769279 7.68519221 7.435860682 7.204664126 7.588751844 33151352 sigma_32 Stress Sigma factors Haemophilus ducreyi 35000HP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus ducreyi; 7.410878499 7.381620194 7.586093025 7.220548177 7.490826917 7.629892384 7.293113694 7.287285182 7.447418634 115519025 sox Sulphur Sulphur oxidation Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.513072233 7.391953227 7.512545822 7.018601514 7.093062149 7.64662817 7.430079065 7.288058788 116612728 Catechol Organic Remediation Aromatics Other aromatics Arthrobacter sp. FB24 7.465994064 7.374939006 7.361760748 7.67923293 16503255 pstB Stress Phosphate limitation Salmonella enterica subsp. enterica serovar Typhi 7.229767741 7.655336403 7.278542076 7.050062284 7.724100439 7.793409779 7.600359448 7.408633097 7.664864402 50419601 tftH Organic Remediation Aromatics Chlorinated aromatics Debaryomyces hansenii CBS767 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Debaryomyces;species:Debaryomyces hansenii; 7.520701215 7.46868366 167778571 linB Organic Remediation Pesticides related compound Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira biflexa; 7.502284434 7.259252611 7.392990617 6.827188401 7.058360203 7.88125762 7.242013164 7.123146434 149814845 AceB Carbon cycling Carbon degradation others Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 7.61247177 7.433243619 196156147 phoA Stress Phosphate limitation Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 7.223338051 6.923765533 225045391 sigma_70 Stress Sigma factors Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 7.563899816 7.711525612 7.643059145 7.624742487 7.728830205 239839118 AceA Carbon cycling Carbon degradation others Micrococcus luteus NCTC 2665 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus;species:Micrococcus luteus; 7.758864918 7.650451946 7.599005353 7.355551766 169189154 atzC Organic Remediation Herbicides related compound Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.273593029 6.929848274 7.001671691 227338554 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Rhizobium sp. NGR234 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 7.6996509 7.724921623 7.329599402 7.544923992 7.918863423 7.936440701 7.771313731 7.75702174 7.878977933 78194684 pimF Organic Remediation Aromatics Aromatic carboxylic acid Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 7.681213919 8.216131314 8.255147005 7.500301307 8.324388764 7.882130806 8.140132935 8.40049829 189303769 adpB Organic Remediation Pesticides related compound Sphingomonas sp. JK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 7.588532263 7.231893418 6.91708096 7.463510053 7.047681534 7.471904662 186463829 pstA Stress Phosphate limitation Nostoc punctiforme PCC 73102 7.078939861 6.883392807 114308564 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Nitrosomonas eutropha C71 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas eutropha; 7.967767716 7.892863208 7.727457738 7.75032863 8.028023514 7.922884629 7.414140127 7.767944666 78102393 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.743818447 7.831124035 7.43698715 158331912 phn Organic Remediation Herbicides related compound Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 7.590963915 7.59919376 7.496293144 7.513076965 7.932143643 7.83012308 7.766459014 7.43862192 7.624453435 163733288 nhh Organic Remediation Aromatics Nitoaromatics Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 7.65605859 7.87588968 7.679276447 7.520013815 7.658189281 8.038387468 7.761540012 7.54805796 113945095 pulA Carbon cycling Carbon degradation Starch Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 8.526856343 8.589912252 8.355808108 8.291266048 8.468895269 8.390847893 8.357199173 8.202278461 7.768312896 145299103 fnr Stress Oxygen stress Aeromonas salmonicida subsp. salmonicida A449 7.021259062 6.92352258 7.219393735 6.704938908 7.566888761 6.850846452 6.713662904 7.464972524 241906803 pstB Stress Phosphate limitation Desulfovibrio vulgaris RCH1 7.647920781 7.265473832 7.725750045 7.889085924 7.523705074 7.912889954 7.436218939 7.308875628 7.416593009 7190072 gyrB other category gyrB Chlamydia muridarum Nigg superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Chlamydiaceae;genus:Chlamydia;species:Chlamydia muridarum; 7.428009799 7.307033792 226318113 AceB Carbon cycling Carbon degradation others Deinococcus deserti VCD115 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 7.32544927 7.72676381 58003045 iro virulence Gluconobacter oxydans 621H superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter oxydans; 7.279963582 7.409972093 190700909 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.200497023 7.299290514 7.441122935 7.747751033 7.476945937 7.428300094 7.654772479 7.343702765 10174856 alkH Organic Remediation Other Hydrocarbons Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 7.417298925 7.122768459 7.472147417 7.205957342 7.110063971 7.750698937 7.277208865 7.531850981 7.446010177 157322505 pcaG Organic Remediation Aromatics Other aromatics Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 7.918194602 7.890313141 7.578866161 7.401031035 7.912223824 7.734739809 7.52671136 8.060497691 89352588 oxdB Organic Remediation Aromatics Nitoaromatics Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 7.755018609 7.821421344 7.645982512 7.117488539 7.806579908 7.838788639 7.758170815 7.660931653 7.599182846 269832345 endochitinase Carbon cycling Carbon degradation Chitin Vibrio harveyi 1DA3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 7.11142666 6.975147173 167032436 iro virulence Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.610621115 7.606481802 7.850214438 7.741054169 7.594281242 7.76223413 76558269 cadBD Metal Resistance Cadmium Natronomonas pharaonis DSM 2160 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natronomonas;species:Natronomonas pharaonis; 7.671389642 7.420715599 7.606534773 7.572063038 7.342319939 7.765292277 206895282 pstA Stress Phosphate limitation Coprothermobacter proteolyticus DSM 5265 7.231147682 7.237027417 56414060 tutFDG Organic Remediation Aromatics BTEX and related aromatics Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 7.686767676 7.763063642 7.632009177 7.777385795 7.918630693 7.706693429 7.92760461 7.817257247 46110797 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 7.24994209 7.343589742 7.182102305 91228345 gyrB other category gyrB Vibrio alginolyticus 12G01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 7.684291194 7.561442326 7.293461493 7.55386154 7.229953008 7.833184432 255259597 hrcA Stress Heat shock Sideroxydans lithotrophicus ES-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Sideroxydans;species:Sideroxydans lithotrophicus; 7.278695218 6.999419832 7.774561838 7.600975849 7.281766144 7.96733551 7.064733103 7.033369044 218523621 fnr Stress Oxygen stress Methylobacterium chloromethanicum CM4 7.392895119 7.28792445 7.149419442 7.208361127 7.645408005 6.95978848 7.34471143 217503525 nitA Organic Remediation Aromatics Other aromatics Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 8.076761825 7.709441281 7.470000162 7.802060635 7.428185839 7.510274745 7.60467146 108466239 fnr Stress Oxygen stress Myxococcus xanthus DK 1622 7.367827321 7.303095999 7.02091214 6.971330545 7.070473322 7.495274318 7.286086997 7.179961979 182416256 CadA Metal Resistance Cadmium Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 8.038856851 8.096848002 7.747911192 7.90775056 7.965415873 8.044060507 7.998676452 7.992982982 7.990652254 212557689 pimF Organic Remediation Aromatics Aromatic carboxylic acid Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 7.46266005 7.316870674 7.065105585 6.801077598 7.63530967 222086362 nhh Organic Remediation Aromatics Nitoaromatics Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.488209637 7.35839344 7.671129661 7.096093057 7.598359793 7.363717786 7.737607715 160883494 pcc Carbon cycling Carbon fixation Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 7.96262382 7.385469762 7.374514155 146401080 polysaccharide_biosynthesis_protein_EPS Bioleaching EPS Acidiphilium cryptum JF-5 7.316741614 7.237938538 6.977742121 6.773143315 7.654036218 7.330472754 6.88402481 7.14891095 118438436 gyrB other category gyrB Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 10.52338622 10.50238785 10.34595699 146307713 pcc Carbon cycling Carbon fixation Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 7.589259802 7.65044117 7.890271556 7.418983574 7.594128622 7.880059375 7.702983386 7.767705795 7.735741437 114541522 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.930111964 7.813170951 7.810632714 7.466418848 7.933726827 7.884792278 7.539988095 7.778779957 7.956749926 127512801 glucoamylase Carbon cycling Carbon degradation Starch Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 8.17330567 7.835701363 7.90410926 7.811509348 7.747092676 158138915 narG Nitrogen Denitrification uncultured bacterium 7.244915481 7.049963138 23305813 phenol_oxidase Carbon cycling Carbon degradation Lignin Buergenerula spartinae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Buergenerula; 7.466427053 7.241237197 7.320225892 6.617418322 7.106730279 7.563967737 7.505410333 7.17048314 159035707 pcc Carbon cycling Carbon fixation Salinispora arenicola CNS-205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 8.035761418 7.852568632 8.176418149 7.648999726 7.770886116 7.447400369 7.71887536 8.206735266 7.512438929 473250 phtA Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas pseudoalcaligenes superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.020072507 7.757208073 7.718722943 7.902551067 8.130866509 8.130443893 7.543178005 7.775024135 218240819 AceA Carbon cycling Carbon degradation others Alicyclobacillus acidocaldarius LAA1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 7.174133125 7.055567874 126172728 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Shewanella baltica OS155 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 7.996203593 7.794500741 7.468680101 7.898616007 7.69684856 8.066767715 7.805463597 7.715311552 7.70226402 28919523 nagG Organic Remediation Aromatics Aromatic carboxylic acid Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 7.659557518 7.577714218 7.423800815 7.489088788 7.413103412 7.939689751 117994352 ChrA Metal Resistance Chromium Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.786475984 7.513706596 8.1628104 7.691693654 7.577257941 7.878678739 7.623286646 7.915428287 7.568621335 118002067 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.275982855 7.488535015 7.678300217 7.56758214 7.194981307 7.543489522 7.329382266 7.79860702 78698024 nmoA Organic Remediation Aromatics Nitoaromatics Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.067757906 7.564193457 7.58192404 7.612570657 6.980614923 7.878856117 7.13647719 7.365746815 7.441624452 121606037 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 7.657933371 7.786253879 7.819977618 7.63815267 7.5658882 8.076241637 7.337296275 7.838687499 7.204367537 238504717 ara_fungi Carbon cycling Carbon degradation Hemicellulose Aspergillus flavus NRRL3357 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus flavus; 7.243425424 7.232242597 7.276518251 7.094505944 6.772746356 7.670519914 88815569 hrcA Stress Heat shock marine actinobacterium PHSC20C1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 7.338559859 7.286309117 7.056453182 6.718681611 6.979504113 7.572159961 7.440347342 7.549346536 164688783 fnr Stress Oxygen stress Clostridium bartlettii DSM 16795 7.07225714 6.958987684 6.9598984 6.525051685 6.499840054 7.409375712 87135518 chnB Organic Remediation Other Hydrocarbons Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 8.205707783 8.249961217 8.077807245 8.204759568 8.50974748 8.67211337 8.341770927 7.903513016 8.281197983 40809664 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 7.769023839 7.927054319 7.279710786 7.165067089 7.548411058 7.333653014 7.051220647 7.318890783 72120378 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.617821395 7.184523924 7.699510189 7.923460241 7.478989591 7.928456074 7.338156539 7.26507819 183581070 TerC Metal Resistance Tellurium Kocuria rhizophila DC2201 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 7.619804716 7.732720067 8.015790435 7.714667574 8.271612689 8.266560468 8.229919109 8.111108491 253752627 ctsR Stress Protein stress Streptococcus suis SC84 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus suis; 7.301136815 7.017085801 7.027726038 6.838014305 7.110604249 261604654 pstA Stress Phosphate limitation Pectobacterium wasabiae WPP163 7.250985646 7.184142496 78067957 linB Organic Remediation Pesticides related compound Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.375156897 7.154424788 7.676148067 218682076 CadA Metal Resistance Cadmium Rhizobium etli CIAT 894 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.658484238 7.611460785 7.687429165 7.779952483 7.98083278 7.660040606 8.020484791 219861853 clpC Stress Protein stress Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 7.283780296 7.528597293 7.461949806 7.337127809 7.165984856 7.713307556 6.952227646 7.020559799 7.240467063 224745052 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.238487432 8.268540698 8.256303273 7.853312415 7.970844959 7.871999496 7.844260893 8.097537331 7.634471723 157962516 cytochrome Energy process Energy process Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 7.64132139 7.675747596 7.654358829 167621568 chnB Organic Remediation Other Hydrocarbons Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 7.088741322 7.353884373 7.396010746 7.280647862 7.750224997 7.263738003 7.420903282 7.42426559 220906104 ArsC Metal Resistance Arsenic Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.366595663 7.43250529 7.336610209 7.273475634 7.119861776 7.502908127 7.119606169 7.249445386 262375334 SMR_antibiotics Antibiotic resistance transporter Acinetobacter lwoffii SH145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter lwoffii; 7.66159191 7.430743409 7.782980534 7.402546344 7.837107708 7.783456577 7.499830383 7.788516109 7.707601544 254390216 katE Stress Oxygen stress Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 7.421466557 8.029569778 7.719256471 7.634392234 7.735202126 213950888 pstB Stress Phosphate limitation Corynebacterium amycolatum SK46 7.933626916 8.221802988 8.346525714 8.418764552 8.062874498 8.088402171 8.211360813 8.56696031 8.227618592 145553744 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 7.127970184 7.034571222 7.314763645 193212734 sox Sulphur Sulphur oxidation Chlorobaculum parvum NCIB 8327 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum parvum; 7.164433473 7.040047664 7.402327539 42553681 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 7.512421157 7.809797549 7.813700325 7.723454123 7.518264846 7.617907044 7.411373593 8.207466334 220029031 primase Bacteria phage REPLICATION Enterobacteria phage JSE order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.488739024 7.600036252 7.984723288 7.476046973 7.763596699 7.980088093 7.640932286 7.287380334 7.480555625 50982442 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7.60872119 7.504651549 7.684142087 7.303637425 7.816244123 7.965069696 7.808512814 7.772867143 7.562311113 146188541 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.007091549 7.897385685 7.774907593 7.755599356 7.884283145 8.05103995 7.832502056 7.710865816 7.501900975 117612888 CopA Metal Resistance Copper Shewanella sp. ANA-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 7.43738084 7.27749778 7.051623489 7.177962927 7.426937838 7.481311181 7.669902574 7.434101031 23455730 initiator_protein__theta_replication Bacteria phage REPLICATION Lactococcus phage r1t order:Caudovirales;family:Siphoviridae; 7.154324837 7.249929579 7.106249431 6.977000751 7.260419959 7.294045281 7.180309395 7.647530573 241776094 glnA Stress Nitrogen limitation Allochromatium vinosum DSM 180 7.355465242 7.513359075 7.66636848 8.163080687 7.611182635 7.933755176 7.414470659 7.707696002 7.796900721 71383758 nasA Nitrogen Assimilatory N reduction Anabaena cylindrica PCC 7122 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena cylindrica; 8.078808443 7.974986621 7.863161697 7.575556452 7.627035436 7.599715492 7.73768529 253511149 napA Nitrogen Dissimilatory N reduction Helicobacter canadensis MIT 98-5491 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter canadensis; 7.710970741 7.368783101 7.182215363 116255355 cumB Organic Remediation Aromatics Other aromatics Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.530880193 8.151081066 8.274564561 8.460022846 8.143987252 7.923070231 8.045253487 7.87357198 50085090 TerD Metal Resistance Tellurium Acinetobacter sp. ADP1 6.814063545 7.025183109 7.000549348 6.811243874 7.322726608 145242214 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.875654811 8.115230381 7.848389592 7.834351422 8.105505708 7.841221217 8.248082143 8.262086442 194348750 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 7.329382697 7.818227521 7.564604644 7.507679016 7.369534004 7.53779017 7.469363077 7.721361522 120588526 ahpC Stress Oxygen stress Acidovorax citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 7.354141267 7.521098864 7.312703037 7.092551331 7.445005197 194430817 pstB Stress Phosphate limitation Escherichia coli B171 7.792348331 7.642036042 7.595465908 7.377171855 110637914 ZntA Metal Resistance Zinc Cytophaga hutchinsonii ATCC 33406 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Cytophaga;species:Cytophaga hutchinsonii; 7.969317869 7.944938675 8.050222637 7.693477524 8.037221141 8.203308007 8.346387448 110645039 ArsC Metal Resistance Arsenic Acidithiobacillus caldus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus; 7.45194382 7.468117958 7.431601678 7.715235597 7.401239476 7.410720269 7.322394909 7.647060728 210072491 nagG Organic Remediation Aromatics Aromatic carboxylic acid Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 8.260677904 7.932285521 7.985871383 8.348880961 8.044597004 8.710303715 8.143963333 7.991768149 8.064866165 82402335 mer Metal Resistance Mercury Caldicellulosiruptor saccharolyticus DSM 8903 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Caldicellulosiruptor;species:Caldicellulosiruptor saccharolyticus; 7.204917592 6.877744374 1171125 ahpF Stress Oxygen stress Clostridium litorale superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 6.854001469 6.96147877 7.311520706 19909615 gyrB other category gyrB Marinomonas vaga superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 7.21409566 7.279385776 6.871862442 7.110467318 148551047 nagI Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 7.643741103 8.011795064 7.590753779 6.804077233 7.716640181 7.381668558 7.682574302 7.798598072 214042762 oxyR Stress Oxygen stress Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.90659599 7.793342715 7.739497407 7.236839611 7.466461264 119378076 phn Organic Remediation Herbicides related compound Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.417193074 8.620829957 8.561141808 8.916730375 8.673500765 8.543748908 8.677565083 8.928920217 8.81253064 83851553 aclB Carbon cycling Carbon fixation Oceanicaulis alexandrii HTCC2633 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis;species:Oceanicaulis alexandrii; 7.262415108 6.772126687 7.172370237 6.664407583 7.290322818 6.950311283 6.979141925 12667602 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium UMTRAdsr617-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 7.176833884 7.26625194 7.40495345 6.928971953 7.378124869 7.513035451 7.690022196 7.509146146 7.448138385 151302141 APS_AprA Sulphur adenylylsulfate reductase Desulfovibrio piger ATCC 29098 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio piger; 7.318478788 6.893776587 151302120 APS_AprA Sulphur adenylylsulfate reductase Thermodesulfobacterium commune 7.415098209 8.042173238 8.349878213 8.216896247 8.117614634 8.259090159 8.186242422 8.296023048 7.906074944 85825937 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.348742599 7.508324729 7.396101524 7.038136628 7.546297616 151562325 fnr Stress Oxygen stress Ochrobactrum anthropi ATCC 49188 7.511809845 7.640614286 7.55936015 7.379947935 7.417323762 196191361 amyA Carbon cycling Carbon degradation Starch Synechococcus sp. PCC 7335 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.051980957 7.168130062 6.985968615 145701673 heat_shock_protein Bioleaching other category Metallosphaera sedula DSM 5348 7.385760806 7.268204275 7.302153773 6.575491355 6.916484813 7.46724405 114737272 linC Organic Remediation Pesticides related compound Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 8.195273202 8.082770325 7.620085397 8.093522529 7.926776409 8.455503653 7.969062731 7.850836925 7.906234246 86608748 pilin virulence pilin Synechococcus sp. JA-2-3B'a(2-13) superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.355069487 7.177733894 7.245596064 7.309667918 7.164875316 7.470266871 119537041 bphF1 Organic Remediation Aromatics Polycyclic aromatics Nocardioides sp. JS614 8.40573118 8.568789599 8.095481603 7.783953557 8.672552181 8.240672966 8.336614888 8.290882779 89898888 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 7.311163644 7.243271337 7.535049176 6.910771398 7.469635894 7.72507527 7.629743522 7.486693645 7.492688222 227453406 pcc Carbon cycling Carbon fixation Corynebacterium aurimucosum ATCC 700975 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium aurimucosum; 7.500693025 7.968639345 7.818929693 7.554339433 7.636812419 7.634368903 7.86404282 7.608847214 224994887 B_lactamase_A Antibiotic resistance Beta-lactamases Pseudomonas luteola superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.719820847 7.522634553 7.620188773 7.650802248 7.631352917 7.514336418 7.487678499 50119168 pimF Organic Remediation Aromatics Aromatic carboxylic acid Erwinia carotovora subsp. atroseptica SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 7.978654758 8.548290078 8.147271233 7.827567675 8.634672202 7.870492189 8.386107843 8.153257901 8.56418643 188028436 pimF Organic Remediation Aromatics Aromatic carboxylic acid Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 7.616091184 7.829246042 7.830816154 7.236315025 7.936562731 7.71427754 7.798511172 7.911300992 126348026 katE Stress Oxygen stress Streptomyces ambofaciens ATCC 23877 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ambofaciens; 8.228581786 8.240772905 8.184201954 8.763511267 8.560861285 8.403664759 8.4604314 8.505250383 8.179475861 29652416 narG Nitrogen Denitrification uncultured bacterium 8.074177132 7.960062327 7.814460137 7.321260644 7.897759139 8.15365186 8.150814871 7.766685174 190698718 pulA Carbon cycling Carbon degradation Starch Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.444316107 7.377275185 7.570223239 7.455815235 7.046337446 7.907722524 7.611956529 7.228609319 7.717645737 281421190 sigma_24 Stress Sigma factors Prevotella copri DSM 18205 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella copri; 7.948295386 7.898753628 7.65830446 7.239333798 7.726056504 7.596819429 7.680143091 7.675907607 7.85403142 223693079 ahpC Stress Oxygen stress Desulfobacterium autotrophicum HRM2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium;species:Desulfobacterium autotrophicum; 8.229061008 8.271763286 8.263708412 7.859683836 8.34747781 7.806828648 8.33803813 8.233811623 8.264382829 167645910 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.090845962 8.165430583 8.192564761 7.942016842 8.592877086 7.89359766 8.321422609 8.126958343 8.148829982 189467243 MFS_antibiotic Antibiotic resistance transporter Bacteroides intestinalis DSM 17393 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides intestinalis; 8.127424426 8.110812312 7.878151543 7.187361274 7.801446841 7.864831102 7.617398427 8.239252484 194454912 tutFDG Organic Remediation Aromatics BTEX and related aromatics Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 7.682662506 7.495722169 7.634099879 7.528738702 7.51618804 114569031 pstA Stress Phosphate limitation Maricaulis maris MCS10 7.417326716 7.514049982 7.430643633 7.167542619 7.601704918 7.742371767 7.676283281 7.573154059 7.776168456 163749113 katE Stress Oxygen stress Shewanella benthica KT99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella benthica; 7.416251125 7.319924373 7.162734532 6.702879416 7.112315329 7.66254492 87302711 pstC Stress Phosphate limitation Synechococcus sp. WH 5701 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.271556441 8.088496443 7.644962637 7.667596787 7.566364377 7.909664542 7.826366446 7.787458655 34104953 fnr Stress Oxygen stress Chromobacterium violaceum ATCC 12472 7.695355029 7.594372683 7.763789936 7.174144154 7.835248929 7.627997063 7.745981968 7.765377065 7.662325081 124496514 CadA Metal Resistance Cadmium Bacillus coagulans 36D1 7.262099979 7.325778405 7.396092006 7.178286825 6.920248763 7.472283861 7.432009937 7.17916501 7.782084176 89214062 ppx Phosphorus Phosphorus utilization Pseudomonas chlororaphis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas chlororaphis; 7.819192035 7.324481389 7.221666475 7.240584083 7.341658822 7.443270282 7.306812891 7.361882481 161221613 ChrA Metal Resistance Chromium Halomonas anticariensis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 7.90632251 7.41022592 7.877993493 8.000564009 8.184040388 7.939943657 2649216 pstB Stress Phosphate limitation Archaeoglobus fulgidus DSM 4304 7.959064105 7.81452977 7.575558757 7.174441579 7.123034982 7.603685753 7.714323662 7.778067268 226315377 B_lactamase_C Antibiotic resistance Beta-lactamases Brevibacillus brevis NBRC 100599 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus brevis; 7.538226245 7.490585606 7.666113431 7.290962871 7.607546579 7.68660656 7.141158143 7.529756488 7.382173323 156859883 ara Carbon cycling Carbon degradation Hemicellulose Bacteroides uniformis ATCC 8492 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides uniformis; 7.543226576 7.794946747 7.591362523 7.59814997 7.663572745 7.994165442 7.650943789 7.608515972 7.392364843 55724922 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 7.700940207 8.035995459 7.749822419 7.518490069 7.83936678 7.914791659 7.885930355 7.914813367 89199974 TerC Metal Resistance Tellurium Bacillus cereus subsp. cytotoxis NVH 391-98 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cytotoxicus; 7.055812238 7.330160344 7.42469444 7.063004179 6.884267481 7.45692697 6.821944208 7.188375341 198252667 nhh Organic Remediation Aromatics Nitoaromatics Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 7.394668575 7.215186889 7.041064901 126356154 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.027584935 7.934510846 7.844645484 7.616152477 7.365407312 7.806436972 7.48557216 7.85487573 39577086 ahpC Stress Oxygen stress Bdellovibrio bacteriovorus HD100 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 7.451787649 7.904612483 7.306521385 7.072485038 7.163097377 7.986335767 162448592 sigma_24 Stress Sigma factors Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 7.38582598 7.536168186 7.683250084 7.710149334 7.407720127 8.152137185 6778691 dsrA Sulphur sulfite reductase uncultured sulfate-reducer HMS-2 7.416281844 7.192191842 7.393915891 6.857442083 7.0566515 7.508876276 157804845 APS_AprB Sulphur adenylylsulfate reductase Rhabdochromatium marinum superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rhabdochromatium; 7.525939736 7.240036891 7.543590531 7.408223399 6.84960175 7.172611946 7.143088264 125996848 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Shewanella baltica OS155 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 7.101089105 6.792720372 7.210017679 219678000 mauAB Organic Remediation Herbicides related compound gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.475591353 7.352232788 7.29382172 7.174265186 7.228224083 7.549434261 7.408610607 7.403861427 170027539 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.879749312 8.52848769 8.115655954 7.651174836 8.281228417 7.787066117 7.996436782 8.063787991 8.21267759 222138075 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.967444066 7.544951867 7.995660572 7.470964312 7.934354193 7.653052904 7.756071437 7.826082228 7.701336875 163849411 AceA Carbon cycling Carbon degradation others Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 7.472259753 7.54659609 7.528751279 7.295869464 7.786186029 7.825348316 7.692900743 7.662381836 7.726941853 124259780 Arylest Organic Remediation Aromatics Other aromatics Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 7.919373854 7.887351721 7.887203814 8.090707154 7.896898373 7.966997891 7.712832271 7.948637464 7.523064894 238884514 pcc Carbon cycling Carbon fixation Selenomonas flueggei ATCC 43531 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas flueggei; 7.879754113 7.960254517 7.924335093 7.74091086 8.620572872 7.956701846 8.008592995 7.766176819 151280982 TehB Metal Resistance Tellurium Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 7.350971048 7.350651719 7.543147079 7.686198505 7.971193244 7.685797702 7.653891665 7.79288294 7.713539796 148570980 TerD Metal Resistance Tellurium Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 7.533917916 7.495596318 7.274329438 6.869186732 7.363506372 7.541883558 7.46923635 7.362489882 113876529 phn Organic Remediation Herbicides related compound Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 7.236762123 7.275903614 6.939259814 7.07562037 7.228232857 7.344481532 7.135306248 83770502 pheA Organic Remediation Aromatics Other aromatics Aspergillus oryzae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 7.603572009 7.606300004 7.408309932 7.35640948 7.325877375 7.874980996 7.281145288 7.165630217 7.554904327 27359478 pstB Stress Phosphate limitation Vibrio vulnificus CMCP6 7.558642635 7.799774681 6.993771433 7.563160567 7.750340862 7.431304392 7.55702648 7.512684593 115401062 tfdA Organic Remediation Aromatics Chlorinated aromatics Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.9234789 7.986914558 7.498460253 7.814626576 7.756750938 7.851847455 7.584038399 7.68870779 7.410133394 9971369 gyrB other category gyrB Flexibacter litoralis superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Flexibacter; 7.25520485 7.385781946 7.009938039 6.887854089 7.765431325 157320426 SMR_antibiotics Antibiotic resistance transporter Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 7.556615921 7.656975742 7.660178891 7.611798259 7.374802589 7.862814624 7.440498125 7.94645315 33601776 napA Nitrogen Dissimilatory N reduction Bordetella bronchiseptica RB50 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella bronchiseptica; 7.627998693 7.610112772 7.935526083 7.32959299 7.668082812 7.94522358 7.553995793 7.614784761 7.62372099 116669483 TerC Metal Resistance Tellurium Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.54961773 7.427476096 7.341617541 6.991689337 7.221705797 7.940705294 7.388614004 7.325279265 7.501108392 87200158 ZntA Metal Resistance Zinc Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 7.470086707 7.359949455 7.331073936 7.363900211 7.248147997 7.330691338 7.395001386 7.513864666 251778412 fnr Stress Oxygen stress Clostridium botulinum E1 str. 'BoNT E Beluga' 7.074920826 7.229357785 7.000178692 32397442 obgE Stress Radiation stress Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 8.122489142 8.126513426 7.343331331 7.420171757 7.539108273 7.539582769 7.400407049 7.674967012 218723190 tfdA Organic Remediation Aromatics Chlorinated aromatics Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 7.208971323 7.087908139 6.964899379 6.581428741 7.295200096 91793933 pstB Stress Phosphate limitation Shewanella denitrificans OS217 7.571551361 7.146177136 7.196942622 7.151825869 7.528724684 7.401786159 7.3854671 47574201 phdCI Organic Remediation Aromatics Polycyclic aromatics Rubrivivax gelatinosus PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 7.851957073 7.806906079 7.731619053 7.752445685 7.827106849 7.937717746 7.841459413 7.550804935 7.674835123 21467261 BADH Organic Remediation Aromatics Other aromatics Rhizobium etli superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 7.478705384 7.968089342 7.450174887 7.988784639 7.785324256 7.563545939 7.775617727 7.707300925 157692874 linC Organic Remediation Pesticides related compound Bacillus pumilus SAFR-032 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pumilus; 7.662905082 7.537380651 7.627598254 7.418685657 7.621379919 7.731772785 241776078 pilin virulence pilin Allochromatium vinosum DSM 180 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 7.717742066 7.43385497 7.44018506 7.490627709 7.284105791 7.936919614 7.323247137 7.222210301 13471764 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 8.155211651 7.269919163 7.43083867 7.847655432 7.601924567 7.5606601 7.638145815 7.4246606 86281226 phn Organic Remediation Herbicides related compound Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.139676472 7.856697435 7.675725284 8.012857633 7.857276475 8.332363841 7.771876216 7.62575779 7.714193616 58616379 TerZ Metal Resistance Tellurium Azoarcus sp. EbN1 7.446476053 7.794988805 7.759012889 7.208828427 7.37768119 7.615953068 7.330121407 7.322468406 7.407626517 214039012 phoB Stress Phosphate limitation marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.61121915 7.171190783 7.271255126 7.376225607 7.157573883 7.529918095 148976359 CopA Metal Resistance Copper Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 8.568598212 8.398229042 8.238351367 7.817310411 8.164300009 8.264043875 8.1721766 8.08611688 7.811954939 219547917 ArsC Metal Resistance Arsenic Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.435343604 7.314240788 226905764 fnr Stress Oxygen stress Citrobacter sp. 30_2 7.479512359 6.983689825 52004125 nitro Organic Remediation Others Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 7.341919981 7.214200425 7.548971276 6.638438883 7.788431549 7.226316362 7.333046812 118424349 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.596290847 7.584532528 7.545735862 7.773411689 8.012853533 7.805011966 7.577941478 7.675824133 146310004 B_lactamase_C Antibiotic resistance Beta-lactamases Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 8.276435957 7.564567225 7.931282374 7.53773762 7.766512417 7.571023172 7.414446303 8.141124366 142850687 endochitinase Carbon cycling Carbon degradation Chitin Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 7.386609384 7.433167323 7.392815254 7.390598764 7.635098605 7.850072859 7.52166282 7.493988417 7.785867244 218174875 obgE Stress Radiation stress Cyanothece sp. PCC 7424 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.500388043 7.636993521 7.234681764 7.297078986 127514468 cytochrome Energy process Energy process Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 7.384128383 7.437682198 7.590786367 7.331221905 7.847239804 7.375654397 7.081932605 7.171513209 12721566 merT Metal Resistance Mercury Pasteurella multocida subsp. multocida str. Pm70 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Pasteurella;species:Pasteurella multocida; 7.419894275 7.761543135 114845109 ArsC Metal Resistance Arsenic Thermoanaerobacter ethanolicus X514 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Thermoanaerobacter; 7.763100569 7.50402987 27382704 MFS_antibiotic Antibiotic resistance transporter Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 6.968530016 7.195689364 7.997338943 229468963 ahpF Stress Oxygen stress Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 7.488356256 7.274225454 47572901 Xamo Organic Remediation Other Hydrocarbons Rubrivivax gelatinosus PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 7.467945668 7.421852968 260425672 fnr Stress Oxygen stress Citreicella sp. SE45 7.592334653 7.300411657 7.55531819 7.461233469 7.16794777 6.943012847 223470326 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.640638219 7.399519863 7.471532549 7.245820794 7.710044185 7.874286897 7.131863508 7.51338437 268549598 amoA Nitrogen Nitrification superkingdom:Archaea; 7.674486186 7.765160203 7.729458812 7.623569213 8.442057664 7.965808985 8.00886865 7.970691891 76058103 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.108928151 7.223360298 33385661 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.838851422 7.584441441 7.180057146 7.359501029 7.374807655 7.305877159 7.155476957 7.334802629 77463858 nifH Nitrogen Nitrogen fixation Rhodobacter sphaeroides 2.4.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 7.389475175 7.308586634 6.956199887 7.394295059 214045433 HBH Organic Remediation Aromatics BTEX and related aromatics Roseobacter sp. GAI101 8.029873059 8.033256512 8.041485934 8.231395143 8.388791166 8.498703231 8.060702501 8.074540244 7.816610859 126591626 Al Metal Resistance Aluminum Bacillus sp. B14905 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.104702755 7.077798953 7.214301069 6.766860288 6.673616884 7.487216576 7.098232647 7.498493697 92393969 ArsC Metal Resistance Arsenic Psychrobacter cryohalolentis K5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter cryohalolentis; 7.363534904 7.274514371 7.218846246 7.084271638 7.698228783 7.208315976 7.038773206 283819232 obgE Stress Radiation stress Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 7.236535418 7.30984874 7.163072155 6.810179126 6.832003407 7.459079186 110648713 AceA Carbon cycling Carbon degradation others Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 7.966256804 7.98036528 7.771917883 7.407166186 7.615056104 7.902994944 7.813712382 7.74186869 8.052703159 239618509 sigma_24 Stress Sigma factors Kosmotoga olearia TBF 19.5.1 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Kosmotoga;species:Kosmotoga olearia; 7.684310182 7.787285464 7.58723435 7.756507971 7.623941688 7.881285019 7.363724838 7.646408882 229541508 pstB Stress Phosphate limitation Bacillus coagulans 36D1 7.439218106 7.387999112 7.590553844 7.529516876 7.330852048 211582447 pectinase Carbon cycling Carbon degradation Pectin Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 7.119897143 6.967360287 7.245946947 7.018864153 7.318531209 39982549 TehB Metal Resistance Tellurium Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 7.556394785 7.1987994 7.346619439 6.992967312 7.407597779 7.730679505 7.391937899 7.314699407 7.220233752 258539191 nplT Carbon cycling Carbon degradation Starch Lactobacillus rhamnosus Lc 705 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 7.713193183 7.584132699 7.575722029 7.383766258 7.461117496 7.886343699 7.611473245 7.728560769 7.57154306 148762377 ChrA Metal Resistance Chromium Halobacillus salinus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Halobacillus; 7.272067406 7.214434753 6.746006121 6.858413242 7.216513595 167749742 ara Carbon cycling Carbon degradation Hemicellulose Eubacterium siraeum DSM 15702 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium siraeum; 7.269244285 7.344823212 7.259911268 6.770720512 7.094026944 7.571220026 6.936774367 7.270599435 167624834 nrfA Nitrogen Dissimilatory N reduction Shewanella halifaxensis HAW-EB4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella halifaxensis; 7.141832108 6.87920324 17570824 scaffold Bacteria phage STRUCTURAL Enterobacteria phage T3 order:Caudovirales;family:Podoviridae;genus:T7-like viruses; 7.424298014 7.326982821 7.551000386 7.082434681 7.469806947 7.405761737 7.480525646 7.067821898 261280777 sigma_24 Stress Sigma factors Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.731121598 7.585867373 7.110605305 7.375773159 7.391011965 7.28841881 7.522856871 162282798 CODH Carbon cycling Carbon fixation Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 8.032832529 8.084778297 7.902626461 7.827641471 8.125199073 8.062964311 8.150737611 8.148589474 7.88551286 219965634 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.733862046 7.638527524 7.734327315 7.64965792 7.650226437 8.085577698 7.673262289 7.549165858 81170133 pstC Stress Phosphate limitation Synechococcus elongatus PCC 7942 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus;species:Synechococcus elongatus; 7.214180254 7.115648404 7.257134891 268325896 mcrA Carbon cycling Methane Methane production uncultured archaeon superkingdom:Archaea; 7.027820917 6.901468337 194308067 sigma_24 Stress Sigma factors Pelodictyon phaeoclathratiforme BU-1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 7.397365628 7.782987768 7.659291763 7.921766628 7.773104063 7.923122048 7.61686748 223470333 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.421867754 7.211022642 7.460294289 6.999579843 7.238416814 7.186759404 7.170415457 7.027799363 7.507828405 149908848 iro virulence Moritella sp. PE36 7.397374566 7.035083611 238708097 fnr Stress Oxygen stress Yersinia ruckeri ATCC 29473 7.728197676 7.749843523 7.427155128 7.54229409 7.940146632 7.684217999 7.95299711 7.740718064 7.775818031 281304565 sigma_70 Stress Sigma factors Prevotella timonensis CRIS 5C-B1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella timonensis; 7.388106151 7.287155935 7.004066761 7.158988375 7.137982727 7.362373186 116747733 pstA Stress Phosphate limitation Syntrophobacter fumaroxidans MPOB 8.279851432 7.939316818 7.978242346 8.106137052 56680586 nitA Organic Remediation Aromatics Other aromatics Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 7.433273302 7.226225613 7.508630156 7.217438954 6.934084531 7.682453321 7.372395609 7.237777991 7.05008073 152976098 glnR Stress Nitrogen limitation Bacillus cereus subsp. cytotoxis NVH 391-98 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cytotoxicus; 7.333330568 7.064180418 37678914 pstB Stress Phosphate limitation Vibrio vulnificus YJ016 7.08306506 7.342778531 6.586701912 7.483502085 119698451 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.333461574 7.398127111 6.948614393 6.976736794 7.405278375 55163252 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 7.389354959 7.05643446 7.627115563 154253806 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 7.587551754 8.096766549 7.933529911 7.808030266 7.993571498 8.220898344 8.219463384 7.981565233 154251466 fnr Stress Oxygen stress Parvibaculum lavamentivorans DS-1 7.53422802 7.790343462 7.974159198 8.176369572 7.958945288 8.020762641 8.287873888 8.194990308 256542915 pstB Stress Phosphate limitation Thermotoga naphthophila RKU-10 7.691513805 7.840301639 7.663122949 7.715070456 7.529020493 7.905991875 7.811847119 7.930953665 8.002021227 91779820 nmoA Organic Remediation Aromatics Nitoaromatics Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.28526597 8.274034304 7.938031211 8.195723495 8.031069065 8.096052757 7.875407956 8.054980642 3059193 bphD Organic Remediation Aromatics Polycyclic aromatics Rhodococcus erythropolis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7.496339139 7.281947681 7.158971243 7.054754547 7.202222019 6.976211097 85060208 glnA Stress Nitrogen limitation Sodalis glossinidius str. 'morsitans' 7.781963228 7.850306627 7.801293352 7.848864786 8.329755382 8.207597508 7.969864246 8.010092318 111059700 mnp Carbon cycling Carbon degradation Lignin Phaeosphaeria nodorum SN15 7.380180696 7.218757033 7.305039435 6.936555335 7.216680202 7.645390681 7.456451712 7.52967883 7.523345797 114564468 cytochrome Energy process Energy process Shewanella frigidimarina NCIMB 400 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella frigidimarina; 7.944952592 7.931751896 7.651970703 7.486333004 7.967059179 7.889102707 8.15365186 8.021328536 8.022370261 151357392 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.270234975 7.266465748 7.254488244 7.225719745 7.20343291 7.489394724 7.150127427 7.303085175 7.645154597 83285349 pstS Stress Phosphate limitation Crocosphaera watsonii superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Crocosphaera;species:Crocosphaera watsonii; 7.189888275 6.96018783 214043308 alkK Organic Remediation Others Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.372828603 7.38685588 7.519185902 7.669238603 7.517381571 7.58777844 7.437689303 7.368470365 229817734 ara Carbon cycling Carbon degradation Hemicellulose Bifidobacterium angulatum DSM 20098 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium angulatum; 7.82390575 7.643737328 7.661685276 7.47406519 7.942884167 7.862563072 7.982168229 7.702075513 7.786616157 91780299 nmoA Organic Remediation Aromatics Nitoaromatics Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.103059458 7.905884999 7.757014374 8.114163226 8.067203653 7.949497206 7.836689917 7.350088245 109639461 nifH Nitrogen Nitrogen fixation Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 7.906199175 7.334687357 25045822 cpnB Organic Remediation Other Hydrocarbons Rhodococcus sp. T3G6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 6.919068456 7.138102215 6.82252807 6.996717036 7.17056201 7.239352538 37724518 ureC Nitrogen Ammonification Nitrosospira briensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira; 8.247759919 8.369575806 8.212305236 8.053453424 8.102048585 8.079135645 7.950251081 8.393882953 270154056 Ni_Fe_hydrogenase Energy process Energy process Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.166126344 7.209171226 7.314483653 116623189 sigma_24 Stress Sigma factors Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 7.523023165 7.69749488 7.585209164 6.814689077 7.271365946 7.549991077 13541615 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Thermoplasma volcanium GSS1 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermoplasmata;order:Thermoplasmatales;family:Thermoplasmataceae;genus:Thermoplasma;species:Thermoplasma volcanium; 6.857479566 7.027938214 211907942 bphA Organic Remediation Aromatics Polycyclic aromatics Rhodococcus sp. T104 7.018453042 6.645429821 7.406542929 7.298237354 7.572376807 6.877282122 7.090866564 218220382 atzA Organic Remediation Herbicides related compound Mitsuokella multacida DSM 20544 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Mitsuokella;species:Mitsuokella multacida; 7.215574787 7.583382697 27356148 alkK Organic Remediation Others Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.867303931 7.731800747 7.422654007 7.484904057 7.722751411 7.793275185 7.674093124 7.673763395 7.67727328 156857677 APS_AprA Sulphur adenylylsulfate reductase uncultured bacterium 7.945678181 7.849132336 8.144241172 8.06433265 8.188310628 8.135655641 8.380875521 8.282899164 8.003202429 260072580 fnr Stress Oxygen stress uncultured SUP05 cluster bacterium 7.301421591 7.442371565 7.287798534 163797106 pstB Stress Phosphate limitation alpha proteobacterium BAL199 8.116579178 8.199800253 8.06473831 8.607472717 8.34041876 8.264485616 8.115080479 8.174036588 258524293 pstB Stress Phosphate limitation Desulfurivibrio alkaliphilus AHT2 7.38352041 7.361573478 7.472066214 6.887701437 7.167765589 7.426318464 7.480243077 7.186744365 8.056033554 153091163 alkK Organic Remediation Others Mannheimia haemolytica PHL213 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Mannheimia;species:Mannheimia haemolytica; 6.957041808 6.898900351 6.582291965 7.081733495 256831911 aclB Carbon cycling Carbon fixation Jonesia denitrificans DSM 20603 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 7.447974569 7.886435934 8.286010291 8.358065026 8.051116802 8.048455806 8.142404725 8.095825895 256826540 srt virulence surface protein Cryptobacterium curtum DSM 15641 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Cryptobacterium;species:Cryptobacterium curtum; 7.658840871 7.823337281 7.573723792 7.114716911 7.548219727 7.430488225 6.925561485 7.69906428 7.578967579 8671011 dsrA Sulphur sulfite reductase Desulfobulbus rhabdoformis superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfobulbus; 7.515974315 7.584966924 6.946207035 7.510005255 126668419 TerZ Metal Resistance Tellurium Marinobacter sp. ELB17 7.156399893 7.09757298 162149576 pstB Stress Phosphate limitation Gluconacetobacter diazotrophicus PAl 5 7.045663762 7.302241079 260862310 narJ Stress Oxygen limitation Selenomonas sputigena ATCC 35185 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sputigena; 7.291975593 7.30700091 6.965274944 6.623306235 7.342732834 229243774 exoglucanase Carbon cycling Carbon degradation Cellulose Cellulomonas flavigena DSM 20109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 7.665461269 7.679757256 7.990755047 7.984919007 7.837498211 32527404 catB Organic Remediation Aromatics BTEX and related aromatics Ralstonia eutropha superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 6.994143939 7.235863845 7.089499568 24194926 cap virulence capsule Leptospira interrogans serovar Lai str. 56601 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira interrogans; 7.203484916 7.255064473 157368662 SMR_antibiotics Antibiotic resistance transporter Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 7.159261053 7.043373257 7.168215604 7.034948765 6.790865122 7.809663949 7.01448864 7.064249867 7.359706665 190012284 ArsC Metal Resistance Arsenic Stenotrophomonas maltophilia K279a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 7.670946497 7.367225988 7.00573516 7.31300284 7.636170083 7.652534605 7.628057868 7.466211012 7.678372267 240849822 ppx Phosphorus Phosphorus utilization Bartonella grahamii as4aup superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella grahamii; 7.419536573 7.351409566 7.21576001 145702056 ABC_transporter_I Bioleaching other category Metallosphaera sedula DSM 5348 7.633816504 7.443349774 7.476504697 7.379842525 7.200031527 7.603963361 6.977034505 7.165716186 27377800 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.366271339 7.208230728 7.374443165 225037662 ahpF Stress Oxygen stress Blautia hydrogenotrophica DSM 10507 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Blautia;species:Blautia hydrogenotrophica; 7.570981711 7.428276745 7.627881878 7.50973709 7.624528277 7.343295286 7.560542831 7.417665154 257148215 pstS Stress Phosphate limitation Lactobacillus rhamnosus GG superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 7.243530176 6.967133958 7.350061855 91794275 obgE Stress Radiation stress Shewanella denitrificans OS217 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella denitrificans; 7.089781809 6.955898003 7.213539 6.832119336 6.817918972 7.469377615 194309216 pstA Stress Phosphate limitation Pelodictyon phaeoclathratiforme BU-1 7.230547008 7.145234918 6.960163332 159173089 oxyR Stress Oxygen stress Vibrio sp. AND4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.346833285 7.231499968 6.704035033 7.286091008 85712755 pilin virulence pilin Idiomarina baltica OS145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina baltica; 8.360769214 8.234901516 7.525705658 7.618932455 8.35680466 7.630473599 8.282280143 8.199047429 7.901159849 42558562 CadA Metal Resistance Cadmium Comamonas sp. B0638 7.884318676 7.428390487 33575546 pstB Stress Phosphate limitation Bordetella bronchiseptica RB50 7.934394967 8.146697552 7.802620699 7.815344664 8.195775407 8.166384521 8.145799377 7.946548856 8.107504773 237903035 phenol_oxidase Carbon cycling Carbon degradation Lignin Uncinocarpus reesii 1704 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 7.582249608 7.510288659 7.499792102 7.393108687 7.294879101 7.721226661 7.607859269 7.370493285 7.659521388 15621065 Blue_copper_protein Bioleaching Sulphur Sulfolobus tokodaii str. 7 7.071009168 7.33558123 7.084968757 189340072 aoxB Metal Resistance Arsenic Chlorobium limicola DSM 245 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium limicola; 7.039506726 7.262659443 7.3578326 189914448 arcA Stress Oxygen limitation Actinobacillus pleuropneumoniae serovar 7 str. AP76 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus pleuropneumoniae; 6.977893513 7.143345467 106771716 amyA Carbon cycling Carbon degradation Starch Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 7.721622573 7.434259618 7.324484919 7.017129272 7.18619506 7.454306435 13516989 gyrB other category gyrB marine CFB-group bacterium MBIC01599 superkingdom:Bacteria;phylum:Bacteroidetes; 7.408093939 7.294019442 7.399721646 6.933717219 7.518338832 7.234040801 6.987948831 14026803 glnA Stress Nitrogen limitation Mesorhizobium loti MAFF303099 6.937603039 7.316978243 7.350975117 7.256046921 7.662988926 7.07531359 7.096562039 7.26564834 89074644 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Photobacterium sp. SKA34 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium; 7.382780984 7.096982181 7.272310447 6.876200999 7.410497889 71905235 rubisco Carbon cycling Carbon fixation Sulfobacillus acidophilus superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Sulfobacillus; 7.157840518 6.594498905 6.634119789 7.336023029 153894481 CopA Metal Resistance Copper Halorubrum lacusprofundi ATCC 49239 7.550074276 7.753219101 7.030829058 7.843784179 7.524187476 7.431984526 8.020963745 113881638 sigma_70 Stress Sigma factors Synechococcus sp. CC9311 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.375868498 7.452131181 154251547 alkH Organic Remediation Other Hydrocarbons Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 7.443316263 7.309189482 7.465338021 6.811233974 7.304360749 7.44662777 87302926 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Synechococcus sp. WH 5701 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 6.964263168 7.446434378 6.950911907 6.985553465 7.624181149 7.060344592 7.186542319 7.136294988 145610030 amyA Carbon cycling Carbon degradation Starch Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 7.274722396 7.430243682 7.694172461 7.615796643 6.637783817 7.753268241 7.099627124 7.363569675 7.320024175 116250736 BDO Organic Remediation Aromatics BTEX and related aromatics Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.272512488 7.799256467 7.695943279 8.335247012 8.07048807 7.90179417 8.100934138 7.998441246 119383923 cbdA Organic Remediation Aromatics Chlorinated aromatics Paracoccus denitrificans PD1222 7.987459923 8.114833136 7.827817867 7.786885859 7.708160433 7.669671078 7.53987411 7.325784821 7.711538998 253826067 endochitinase Carbon cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 8.145886378 8.214734726 8.349532171 8.447791161 8.58856381 8.464040148 8.490340081 8.270650597 8.795850427 227377281 ara Carbon cycling Carbon degradation Hemicellulose Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 7.645265499 8.120766898 7.560180404 7.91236774 7.746079652 8.109426336 7.526128095 7.827861703 7.399749334 192288865 oxyR Stress Oxygen stress Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.385375532 7.487703884 7.490314271 7.41602263 7.646814378 21038968 tfdA Organic Remediation Aromatics Chlorinated aromatics alpha proteobacterium HW13 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 7.684497391 7.819304268 7.673076616 7.221841949 8.090107225 8.126121015 7.725597629 7.970879264 7.478074876 110599019 bclA Organic Remediation Aromatics Aromatic carboxylic acid Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 7.356550563 7.433899765 7.644090505 7.222736733 7.704309499 7.533521873 7.555810871 7.713446455 255327065 glnA Stress Nitrogen limitation Rothia mucilaginosa ATCC 25296 7.999333405 7.959024755 7.915014393 8.071038327 8.051335367 8.120855908 7.924416082 7.825400218 8.179801518 74316920 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 7.938178509 8.075735472 8.239600742 8.284764804 7.896418869 8.028759664 8.055234975 8.407399332 145322538 pimF Organic Remediation Aromatics Aromatic carboxylic acid Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 8.099190597 8.082825576 7.804669715 8.09172676 8.423258419 8.011520527 8.058260804 7.795875697 94310632 fnr Stress Oxygen stress Ralstonia metallidurans CH34 8.030342886 8.124427329 7.98349389 7.81797208 8.054987381 8.086763629 8.125686211 8.000923799 7.671813617 218708609 pstB Stress Phosphate limitation Vibrio splendidus LGP32 7.470388538 7.322225847 256760280 pilin virulence pilin Thiomonas intermedia K12 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas;species:Thiomonas intermedia; 7.498681246 7.648115668 7.491646489 7.306732608 7.552585768 7.913535829 7.805876184 7.579357897 7.452698988 192813742 atzA Organic Remediation Herbicides related compound Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.447728618 7.077050759 7.069702307 87199618 ChrA Metal Resistance Chromium Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 8.251173984 7.820245328 7.911389125 7.812015949 7.864402948 7.700759353 7.447077009 110827134 pimF Organic Remediation Aromatics Aromatic carboxylic acid Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 7.825327727 8.090625074 7.973689404 8.019626697 8.115055954 7.780579798 8.00560772 7.716134359 189467297 sigma_24 Stress Sigma factors Bacteroides intestinalis DSM 17393 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides intestinalis; 7.548334498 7.556985512 7.387666914 6.828909026 7.476312025 7.296342064 6.975767717 7.493571246 150014824 rubisco Carbon cycling Carbon fixation uncultured beta proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 7.948709662 8.128005412 7.625198363 7.528763333 7.914714599 7.960630688 7.921100017 7.635290294 7.799934091 238546815 MFS_antibiotic Antibiotic resistance transporter Klebsiella pneumoniae NTUH-K2044 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 8.471053589 7.504256281 91783083 mhpA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.120354797 7.201208239 6.933631961 6.902605698 6.79386369 254469710 proV Stress Osmotic stress Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 7.782526689 7.589100167 7.736159009 7.301611218 7.047685152 7.732827371 238756023 cydA Stress Oxygen limitation Yersinia ruckeri ATCC 29473 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia ruckeri; 7.107441 6.95893264 6.970258064 6.757322413 7.31271232 266625953 hrcA Stress Heat shock Clostridium hathewayi DSM 13479 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 7.949664834 7.786747188 7.415951312 7.506559158 8.227082545 7.662655484 7.424778783 7.59861569 260062217 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 7.354085377 7.302520592 7.638522096 7.139514339 7.192429366 7.46458181 7.309356035 7.5108556 170693249 sigma_24 Stress Sigma factors Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 7.724116754 8.072756365 8.29568673 8.214384826 8.383159327 8.209705247 8.164862065 8.285862288 8.074170263 85712487 obgE Stress Radiation stress Idiomarina baltica OS145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina baltica; 7.655311713 7.147240069 7.460784115 7.859363076 7.505969359 7.219683668 7.423803013 7.400875837 126645533 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Algoriphagus sp. PR1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cyclobacteriaceae;genus:Algoriphagus; 7.365312603 7.445643465 7.067317098 7.262323369 7.561199962 6.994989105 7.331283314 213963413 cda Carbon cycling Carbon degradation Starch Capnocytophaga sputigena Capno 8.851964518 8.603611942 8.37748184 8.203595373 9.029529238 9.021625178 8.148352632 9.129792913 186466685 pstB Stress Phosphate limitation Nostoc punctiforme PCC 73102 7.020997218 7.04009067 6.928383179 6.493755756 7.467094811 6.713162913 7.368576583 197210089 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.30575237 7.318654858 6.914384286 7.34022013 7.023517416 7.265696008 15613698 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 7.350931727 7.31390362 7.335939722 7.300478655 260613837 pilin virulence pilin Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 7.202477273 7.013700044 117981782 ChrA Metal Resistance Chromium Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.184494107 7.823454214 7.614075132 7.364581014 7.945159767 8.075522459 7.805808235 7.562903331 7.487091115 88814027 TerC Metal Resistance Tellurium marine actinobacterium PHSC20C1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 7.211585114 7.216644798 7.027653046 88643351 dsrA Sulphur sulfite reductase uncultured prokaryote 7.326686643 7.447755462 7.607211347 7.442879315 7.468885815 7.785252415 7.42738639 7.740021243 7.705740394 242805901 MFS_antibiotic Antibiotic resistance transporter Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 7.166239379 7.726422664 88083786 tfdA Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 8.339581794 8.372123271 8.1248965 8.27799069 8.661483919 8.488875016 8.438820128 8.330698207 8.322482661 225792169 glnA Stress Nitrogen limitation Acidobacterium capsulatum ATCC 51196 8.031005629 8.16093836 7.499119821 7.934078407 8.096426365 8.130653855 8.028079785 7.639056577 8.227456251 83269486 pcaG Organic Remediation Aromatics Other aromatics Brucella melitensis biovar Abortus 2308 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Brucella;species:Brucella abortus; 7.058562254 7.083426935 7.032574945 6.811961021 7.377841623 57640224 tutFDG Organic Remediation Aromatics BTEX and related aromatics Thermococcus kodakarensis KOD1 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus kodakarensis; 7.552003536 7.232536196 7.183701621 7.037972121 7.424651353 7.391240228 7.5847379 148570363 AceA Carbon cycling Carbon degradation others Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 7.211078053 7.482360698 3378399 todC Organic Remediation Aromatics BTEX and related aromatics Novosphingobium aromaticivorans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 7.771972369 7.272284703 7.001703109 6.969489019 7.591216124 2547080 pstA Stress Phosphate limitation Enterobacter cloacae 7.691570615 7.645637657 85711128 AceA Carbon cycling Carbon degradation others Idiomarina baltica OS145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina baltica; 6.91240958 7.428843925 6.865265203 7.506592148 23494777 sigma_24 Stress Sigma factors Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 7.459333457 7.4323337 7.64117257 7.729269242 7.312726028 262395141 AceB Carbon cycling Carbon degradation others Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.851492395 7.637841392 7.459757066 7.43830505 7.06625455 7.948072206 7.758598326 7.504562258 7.154245822 163668083 fnr Stress Oxygen stress Chloroflexus aurantiacus J-10-fl 7.28820122 7.191736058 7.201257174 7.313934071 7.116233272 45124732 P450 Energy process Energy process Streptomyces peucetius ATCC 27952 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces peucetius; 7.676739955 7.443328553 7.445026349 7.199259606 7.360186363 7.651127982 7.479819601 7.419090007 119377627 pstB Stress Phosphate limitation Paracoccus denitrificans PD1222 7.877589727 7.822496461 7.731314654 7.390888491 7.764809571 7.940677865 7.542365806 7.886933898 238790492 cydB Stress Oxygen limitation Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 7.272085163 7.178274593 7.469872574 7.338443701 7.106108543 7.833997877 7.456843935 7.152484814 7.590691029 85858651 bclA Organic Remediation Aromatics Aromatic carboxylic acid Syntrophus aciditrophicus SB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Syntrophus;species:Syntrophus aciditrophicus; 7.547675292 7.815308791 7.706351818 7.503117553 7.551351399 7.772745343 7.194203791 238788607 B_lactamase_C Antibiotic resistance Beta-lactamases Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 6.867525289 7.056813855 251816427 sigma_70 Stress Sigma factors Streptococcus suis SC84 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus suis; 6.797605678 6.708176377 157283885 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 7.162069635 7.349242394 7.841970746 7.618102823 7.119058776 7.418946961 7.343169002 7.604111528 154174640 gdh Nitrogen Ammonification Campylobacter curvus 525.92 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter curvus; 6.840208566 6.716455547 14026899 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 7.417505322 7.191136925 6.93542548 6.788177259 7.727093828 6.861272602 7.025715069 6.93705478 62180765 nagI Organic Remediation Aromatics Aromatic carboxylic acid Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 7.829170434 8.231504228 7.997385657 7.653572279 8.198064841 7.826957446 7.982627884 8.264947952 8.022088349 160900314 alkH Organic Remediation Other Hydrocarbons Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.939284324 8.032274766 7.751015881 7.425650392 8.055094976 8.006304771 8.036280863 7.795707298 7.843651121 72161386 glnA Stress Nitrogen limitation Thermobifida fusca YX 7.39448679 7.493722774 7.199162812 7.270198706 7.615272324 83724058 nagI Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia solanacearum UW551 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 7.298904663 7.302314015 7.698058672 7.660713348 7.992955689 7.969607752 7.999636529 7.803010783 7.561374415 116228570 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 7.82593956 7.866794985 8.00320093 7.584028118 7.654839013 7.907617748 7.604048109 7.959808543 7.597462603 160900851 hrcA Stress Heat shock Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.559970828 7.432025782 7.248239395 7.391851845 7.809776446 7.354363612 7.210361214 190699421 pulA Carbon cycling Carbon degradation Starch Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.842142774 7.776722125 7.620323684 7.082430582 7.569853434 7.425045294 7.456224962 7.623207329 68550399 gyrB other category gyrB Pelodictyon phaeoclathratiforme BU-1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 7.524366431 8.100358394 7.997330849 7.75449622 7.915701499 119525253 rubisco Carbon cycling Carbon fixation Thermofilum pendens Hrk 5 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermofilaceae;genus:Thermofilum;species:Thermofilum pendens; 7.409916304 7.307136635 7.227073771 6.972790688 7.479116115 237832533 Tet Antibiotic resistance other Toxoplasma gondii ME49 superkingdom:Eukaryota;phylum:Apicomplexa;class:Coccidia;order:Eucoccidiorida;family:Sarcocystidae;genus:Toxoplasma;species:Toxoplasma gondii; 7.466277183 7.640329643 7.906108954 7.455773478 8.099278188 8.000686218 8.034699296 8.091199659 8.104879749 126172813 cytochrome Energy process Energy process Shewanella baltica OS155 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 7.528599451 7.396528292 7.287124327 7.403311354 7.159745965 6.977001167 7.340097597 255947820 phoA Stress Phosphate limitation Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 7.626200669 7.152399602 7.51445237 7.120885858 7.259925517 7.172337671 7.151151125 7.518477917 183600355 obgE Stress Radiation stress Providencia stuartii ATCC 25827 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia stuartii; 7.721064112 7.608875044 7.236887536 7.591020468 7.213559359 7.37358643 7.458322131 7.275987475 190012498 iro virulence Stenotrophomonas maltophilia K279a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 7.602947553 7.341284961 7.31574213 7.144490698 7.45505422 7.162754072 7.362955837 7.400274453 218356526 CMCI Organic Remediation Aromatics Other aromatics Escherichia fergusonii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 7.824857127 7.706124178 7.501373825 7.718645126 8.027436456 7.930719883 7.884846235 7.602009213 166860629 pstB Stress Phosphate limitation Pseudomonas putida GB-1 8.463612905 8.294609607 7.836272732 8.168936463 8.065306401 8.019176414 7.814169707 8.059833577 7.676744451 167348269 pcc Carbon cycling Carbon fixation Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 7.678496784 7.39990972 7.894114198 7.961545885 7.304697155 7.854244219 7.312408973 7.300850147 93358449 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 7.387360128 6.869172492 6.886423537 6.883821371 7.432619196 6.855238458 6.665039489 6.934228836 163734819 vanA Carbon cycling Carbon degradation Others Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 7.583338583 7.833204046 7.736299526 7.620779989 7.428784365 8.28788722 7.701217472 7.566796375 7.573024863 215262709 amoA Nitrogen Nitrification superkingdom:Archaea; 7.684007663 7.684918684 7.396287175 7.523513032 7.266040428 7.746189309 7.517961053 7.414093187 187717865 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.731759166 7.662478135 7.669025683 7.349744926 7.896247055 8.057848276 7.520042954 7.553975937 7.750697424 24374124 alkK Organic Remediation Others Shewanella oneidensis MR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella oneidensis; 7.140586705 7.391020585 121606036 nagK Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 7.602791923 7.608817297 7.643537777 7.193127869 7.741631859 7.760427609 7.535349111 7.370437246 7.348983219 160859462 gyrB other category gyrB Shewanella baltica OS195 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 7.554735255 7.470282646 7.417048093 6.876747615 7.769896855 220714432 silC Metal Resistance Silver Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.744849549 7.334577868 7.491662371 7.554029544 7.347668504 7.743396162 7.240476715 7.065419487 7.473154298 25026880 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 7.96918777 7.852055146 7.8747659 7.167061925 7.604214964 7.413189552 7.508472956 7.627541575 7.684067205 255254627 amyA Carbon cycling Carbon degradation Starch Thermoanaerobacter italicus Ab9 7.505644666 7.406712917 7.307999369 7.126146238 7.574888712 7.127505538 7.037367643 77461107 katE Stress Oxygen stress Pseudomonas fluorescens Pf0-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.515608053 7.466095439 7.554575855 7.56247597 7.38928798 7.618440674 7.685642314 7.49064589 7.586605262 157076420 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Streptococcus gordonii str. Challis substr. CH1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus gordonii; 7.308252142 7.122311291 7.093242514 7.123278146 7.540076622 7.201508958 7.576298657 167464139 sigma_70 Stress Sigma factors Paenibacillus larvae subsp. larvae BRL-230010 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus larvae; 6.92534988 6.913454406 148474672 nrfA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.489280768 7.52439914 7.207403417 7.270313283 7.030343027 7.680450012 7.522429927 7.344780236 7.169534229 255255970 obgE Stress Radiation stress Thermoanaerobacterium thermosaccharolyticum DSM 571 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Thermoanaerobacterium;species:Thermoanaerobacterium thermosaccharolyticum; 7.59213701 7.33072938 7.858326136 8.358734001 7.799828065 8.03086547 7.908395064 8.32227772 8.306588226 120594319 nagL Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 7.756706098 7.886693412 7.822844339 7.144654613 7.952710673 7.385559762 7.726413793 7.522713113 223459306 pcc Carbon cycling Carbon fixation Prevotella copri DSM 18205 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella copri; 7.365853091 7.252656155 6.907237124 281420881 sigma_70 Stress Sigma factors Prevotella copri DSM 18205 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella copri; 7.940493483 7.900506691 7.917600593 8.124000867 7.907446257 8.109646221 8.138473072 8.003895183 7.857442619 241893835 pstB Stress Phosphate limitation Sphingobacterium spiritivorum ATCC 33861 8.017032075 7.737340806 7.382256435 7.335109565 7.973541553 7.525386391 7.768672722 7.95117254 7.503987397 242392064 clpC Stress Protein stress Streptococcus dysgalactiae subsp. equisimilis GGS_124 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus dysgalactiae; 7.073848764 6.929567955 161167031 gyrB other category gyrB Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 8.13322989 8.006282435 7.640704966 7.538987376 7.917578411 8.24235447 7.646605247 7.937371971 7.67373468 111025293 tftH Organic Remediation Aromatics Chlorinated aromatics Rhodococcus sp. RHA1 7.120100166 7.129917265 7.311026017 7.180879856 7.594116117 125972766 CadA Metal Resistance Cadmium Clostridium thermocellum ATCC 27405 7.209080657 7.283139748 7.429023467 6.646650124 6.860174752 7.485279988 7.004371888 7.138342972 251845081 ara Carbon cycling Carbon degradation Hemicellulose Paenibacillus sp. oral taxon 786 str. D14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 7.330493709 7.297710144 7.308611402 7.105081438 7.057943718 7.883382801 7.233877477 6.878288758 7.574810981 118048651 atzA Organic Remediation Herbicides related compound Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 7.007803114 7.244743023 6.826786961 6.851762877 7.408282683 94549708 linB Organic Remediation Pesticides related compound Acidobacteria bacterium Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 7.627058631 7.356528252 7.217342654 7.260651598 7.600537304 7.826376794 7.676625751 7.263200604 167588858 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia ubonensis Bu superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ubonensis; 7.879335381 7.506068975 7.362822776 7.327832397 7.0069248 7.625015289 7.325008064 168991025 srt virulence surface protein Lysinibacillus sphaericus C3-41 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Lysinibacillus;species:Lysinibacillus sphaericus; 7.883978162 7.737158799 7.502916278 7.501917831 7.687973011 7.7442059 7.419425592 7.371207517 7.268337665 157963800 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 6.940392684 7.085323769 6.922587608 85817478 obgE Stress Radiation stress Dokdonia donghaensis MED134 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Dokdonia;species:Dokdonia donghaensis; 7.228978288 7.407616133 7.714154219 7.390227366 7.560635282 7.726134052 7.471421272 121556028 sigma_32 Stress Sigma factors Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 7.095081298 7.340942443 7.625240223 7.565418367 7.367314854 7.550374371 7.609266553 7.632407932 89051279 endochitinase Carbon cycling Carbon degradation Chitin Photobacterium sp. SKA34 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium; 6.983960551 6.766087721 7.196417775 7.135829589 6.560479064 7.598013875 48527128 mcrA Carbon cycling Methane Methane production uncultured Methanomicrobiales archaeon superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales; 8.117163443 8.006068271 7.968119769 7.794154832 8.075205254 7.805502453 7.713439193 7.646950299 55978113 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.534791683 7.061021379 7.346386647 6.837898085 7.231425058 7.574340683 7.451787941 7.300842187 7.495639241 3157592 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 7.451153944 7.233594132 7.681708204 7.69873641 7.33557597 7.898408413 7.368397314 7.549979878 7.485959863 226834486 sigma_70 Stress Sigma factors Actinomyces urogenitalis DSM 15434 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces urogenitalis; 7.492096025 7.574291456 7.454008142 7.276484348 7.533362533 7.285159019 72383736 CODH Carbon cycling Carbon fixation Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.879903503 7.700414593 7.270931776 7.608375609 8.330829156 7.970386674 7.884116403 7.948342727 8.266054618 119434074 tftH Organic Remediation Aromatics Chlorinated aromatics Arthrobacter sp. JS443 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.581673447 7.46081767 7.445830965 7.006754412 7.52153254 7.844036102 7.682364 7.684551348 7.706811595 150960099 katE Stress Oxygen stress Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 7.727922224 7.521871377 7.710814655 7.713146485 7.562198079 7.767010811 186472068 pmdAB Organic Remediation Aromatics Others Burkholderia phymatum STM815 7.186773246 7.102883844 7.645093683 6.897935935 7.785095019 6.923898204 7.026535475 7.329476055 28493321 pstC Stress Phosphate limitation Tropheryma whipplei str. Twist superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;genus:Tropheryma;species:Tropheryma whipplei; 7.311267607 7.173772899 6.841918597 6.705132346 7.608138602 6006710 endochitinase Carbon cycling Carbon degradation Chitin Aeromonas hydrophila superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas; 6.969137189 7.126686155 7.287845473 6.956973905 7.576535898 7.079953089 7.124231272 7.436498673 146190501 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.947371806 7.899234384 7.560993165 7.831548079 8.086467302 7.953834599 7.525008271 7.875577591 121530928 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia pickettii 12J 7.430203021 7.138516749 68346784 PobA Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.733716417 7.534343994 7.194222798 7.733822003 7.408463702 7.853143021 7.34590479 7.497615945 7.444462181 109900222 srt virulence surface protein Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 7.164753881 6.796408779 119539172 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 7.805792995 7.468140619 7.946650183 7.238568624 7.44400146 225520659 clpC Stress Protein stress 'Nostoc azollae' 0708 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena azollae; 7.540337081 7.361717699 7.179799799 6.993191172 7.353353006 7.657285926 7.429403907 7.452669698 51855837 ChrA Metal Resistance Chromium Symbiobacterium thermophilum IAM 14863 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVIII. Incertae Sedis;genus:Symbiobacterium;species:Symbiobacterium thermophilum; 7.57243234 7.151775288 7.574090882 7.719218924 7.317595067 7.57876573 7.233047457 7.399266509 262310685 ureC Nitrogen Ammonification Acinetobacter junii SH205 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter junii; 7.085399301 7.035908756 87239939 bphF1 Organic Remediation Aromatics Polycyclic aromatics Nocardioides aromaticivorans 7.527164778 7.467388039 7.439293054 7.698130257 7.439278052 7.739303454 7.34039688 7.615703336 7.726652433 159892607 mer Metal Resistance Mercury Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 7.863982121 7.745912408 7.770159498 7.484036608 7.49998985 7.865418046 7.499546907 7.627676991 253827814 nrfA Nitrogen Dissimilatory N reduction Helicobacter canadensis MIT 98-5491 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter canadensis; 7.032807721 7.053901961 6.937195081 6.595336256 7.333685132 6.966731841 7.061380817 224964597 MFS_antibiotic Antibiotic resistance transporter Erwinia pyrifoliae Ep1/96 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia pyrifoliae; 7.386178771 7.341634574 7.457056591 149825379 type_III_secretion virulence secretion Limnobacter sp. MED105 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 7.6849269 7.676552367 7.153564543 7.353395111 7.224284117 7.573642514 7.057481671 7.093235535 269131227 sigma_70 Stress Sigma factors Slackia exigua ATCC 700122 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Slackia;species:Slackia exigua; 7.856655882 7.845423286 7.653030629 7.559200102 8.086104815 7.633339969 7.888652357 7.475303863 7.804764255 206686434 mer Metal Resistance Mercury Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 10.60267058 10.67768892 10.29118341 154148465 sigma_70 Stress Sigma factors Campylobacter hominis ATCC BAA-381 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter hominis; 7.419405687 7.361631832 7.21961395 6.920747681 32473476 alkJ Organic Remediation Other Hydrocarbons Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 7.488627722 7.222164097 7.43682021 7.145395418 7.382576 7.458823537 7.16905469 90434377 CopA Metal Resistance Copper Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 7.615510388 7.537822886 7.653610367 7.468384892 7.166103244 126105487 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.117959744 6.826103334 6.948166679 92112446 pcaG Organic Remediation Aromatics Other aromatics Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 7.645802975 8.040559659 7.730946388 7.689989241 8.143415264 7.785094276 7.99899658 7.755845546 7.770296952 169627393 nagG Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium abscessus 7.590229304 7.339345354 7.4736655 7.896820713 8.106075967 8.110052097 7.628640622 7.751626525 133914269 linB Organic Remediation Pesticides related compound Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 7.501858939 7.049685974 8.115944944 7.722742841 7.497004548 8.07532982 7.724943626 219680418 gyrB other category gyrB gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.331133613 7.3049459 7.748245913 7.564618015 7.511170092 7.875029683 7.496304691 7.222483676 7.718753424 88866373 dsrB Sulphur sulfite reductase bacterium LS1415 superkingdom:Bacteria; 7.536322199 7.417944662 7.0098218 7.117418075 7.568693108 120605944 merP Metal Resistance Mercury Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 8.13855686 7.888781679 7.423999404 7.861491329 7.790383665 8.207908716 7.795367513 7.6036567 7.940895791 110341440 nifH Nitrogen Nitrogen fixation Chlorobium ferrooxidans DSM 13031 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium ferrooxidans; 7.615670517 7.347655138 7.744881331 7.284818844 7.408610391 7.509783157 7.344597029 7.638097575 7.513099709 221067382 iro virulence Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.083236036 7.026309748 7.465192205 7.232491216 6.693814926 7.301587153 7.358343553 7.33607527 172039685 gyrB other category gyrB Corynebacterium urealyticum DSM 7109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium urealyticum; 7.660842746 7.296043502 7.099653381 6.957884801 7.345618985 7.453685283 7.246336573 7.101611342 7.364505034 27349319 glnA Stress Nitrogen limitation Bradyrhizobium japonicum USDA 110 7.460967153 7.671482069 7.67248914 7.352578296 7.488774411 7.61463391 261497466 ahpC Stress Oxygen stress Blattabacterium sp. (Periplaneta americana) str. BPLAN superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Blattabacteriaceae;genus:Blattabacterium;species:Blattabacterium sp. (Periplaneta americana); 7.15820322 6.951050982 28542575 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.65111349 7.15607468 7.417828065 7.271801618 7.657705391 7.544573248 7.721804093 7.551728658 7.802396649 109452389 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.539484192 7.171782048 7.417130937 7.51130063 7.392249519 7.044519621 7.117542156 117986968 nmoA Organic Remediation Aromatics Nitoaromatics Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.068228984 7.583511627 7.685820361 7.401477584 7.872484928 8.033542379 8.060040284 7.460139141 7.682773027 12723443 clpC Stress Protein stress Lactococcus lactis subsp. lactis Il1403 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Lactococcus;species:Lactococcus lactis; 7.191544551 6.935691415 6.917033609 114565046 cytochrome Energy process Energy process Shewanella frigidimarina NCIMB 400 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella frigidimarina; 7.363426374 7.415336527 7.32781398 198266291 glnA Stress Nitrogen limitation Octadecabacter antarcticus 238 7.273319636 7.451348254 7.243136098 7.02493479 7.352334558 7.668849663 7.494515121 7.694160472 7.34837696 150036104 sox Sulphur Sulphur oxidation Lamprocystis purpurea superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Lamprocystis; 7.578029595 7.610714584 7.626032876 7.249061428 7.721464915 7.793212132 7.310647149 7.736682877 13358816 gyrB other category gyrB Chitinophaga pinensis superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;genus:Chitinophaga; 8.053317117 8.069256196 7.565077287 7.915797755 8.024572616 8.097971038 7.889830154 8.027573213 84702577 phoB Stress Phosphate limitation Parvularcula bermudensis HTCC2503 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 7.534772728 7.189610088 7.199804812 7.394285165 7.540535108 7.314219808 7.141835597 7.627573252 78516519 mer Metal Resistance Mercury Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.412693039 7.494356095 7.197390449 7.100176539 7.582958347 7.825098574 7.643024835 7.705568846 7.660007044 214033863 atzA Organic Remediation Herbicides related compound Thermococcus sp. AM4 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus; 7.37105337 7.127561927 7.519942352 7.434659273 7.43835063 7.631870165 7.351416881 7.075405208 7.68089714 118587877 bclA Organic Remediation Aromatics Aromatic carboxylic acid Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 7.925291914 8.151060518 7.883911137 7.695188365 8.085938417 7.94056199 8.068003068 7.939852491 7.877697708 197622072 gyrB other category gyrB Aciduliprofundum boonei T469 superkingdom:Archaea;phylum:Euryarchaeota;genus:Aciduliprofundum;species:Aciduliprofundum boonei; 7.703565573 7.463576438 7.611032688 7.971594758 7.696518662 8.530291339 7.401727656 7.20780937 7.505934856 149907925 pimF Organic Remediation Aromatics Aromatic carboxylic acid Moritella sp. PE36 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Moritellaceae;genus:Moritella; 7.104672382 7.425599226 7.427510118 7.411224583 7.172011606 7.907178352 7.180851497 7.455659027 7.720256024 227553491 hly virulence hemolysin Enterococcus faecalis HH22 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus faecalis; 7.365926414 7.032223432 7.265583777 7.03952915 7.422479051 121608079 ahpC Stress Oxygen stress Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 7.49283701 7.490651107 7.268145146 7.09565162 7.133022761 7.652892587 7.475560943 7.024428741 7.101488467 169757516 CadA Metal Resistance Cadmium Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.292528579 7.646231914 8.080608004 8.35065115 8.137285624 8.030955302 8.164349298 8.285049677 203463403 DNA_polymerase_type_I Bacteria phage REPLICATION Mycobacterium phage Solon order:Caudovirales;family:Siphoviridae; 7.39613636 7.326168292 7.70105992 7.349347205 7.246852742 7.756533304 7.79502905 7.378988904 7.688243734 116700368 sigma_24 Stress Sigma factors Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 7.738048139 7.319454271 7.456989116 7.412786941 91202337 czcC Metal Resistance "Cadmium,Cobalt,Zinc" Candidatus Kuenenia stuttgartiensis superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;genus:Candidatus Kuenenia; 7.26597786 7.195270198 7.171726182 6.940054744 7.346899436 165976675 phoB Stress Phosphate limitation Actinobacillus pleuropneumoniae serovar 3 str. JL03 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus pleuropneumoniae; 7.060792151 6.979164194 6.971599848 146274502 nifH Nitrogen Nitrogen fixation Pelotomaculum thermopropionicum SI superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Pelotomaculum;species:Pelotomaculum thermopropionicum; 7.22587724 7.102564418 182414784 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 7.142453891 7.715273756 7.384715884 168188071 dsrB Sulphur sulfite reductase Clostridium botulinum C str. Eklund superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium botulinum; 7.694393519 7.610062569 7.089684258 7.511401732 7.881709856 7.529716669 7.198044216 120405623 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 7.504419102 7.680209485 7.50906953 7.927189855 7.42450668 7.747758081 7.907422775 149909450 sigma_32 Stress Sigma factors Moritella sp. PE36 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Moritellaceae;genus:Moritella; 7.326421552 7.137362204 7.163729233 6.89810464 6.78970365 7.654522245 188575005 catB Organic Remediation Aromatics BTEX and related aromatics Xanthomonas oryzae pv. oryzae PXO99A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 7.430884782 7.597520721 7.382271793 7.534246851 7.709681233 8.003933431 7.8732707 7.778092674 163812044 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 8.120501414 7.799352348 7.880680492 1395139 tdnB Organic Remediation Aromatics Other aromatics Acinetobacter sp. YAA 8.054469207 8.056959438 8.288661745 7.784555 7.624272764 7.720673836 7.989843213 7.433925577 197625740 alkK Organic Remediation Others Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 7.39124541 7.04833111 7.289344152 7.048502314 6.864691315 7.158165716 7.558420921 29652574 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.952106203 7.599469224 7.950151028 7.601648352 7.844144818 7.58994614 7.653812609 7.767422267 24371621 pimF Organic Remediation Aromatics Aromatic carboxylic acid Shewanella oneidensis MR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella oneidensis; 7.104190618 6.802871041 7.051236004 227496501 oxyR Stress Oxygen stress Actinomyces urogenitalis DSM 15434 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces urogenitalis; 8.041015868 8.069256855 8.045468178 7.431807928 8.01279402 7.683482584 7.973808728 8.177374827 7.863168219 148499857 tfdA Organic Remediation Aromatics Chlorinated aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.207997711 8.188031653 8.095988663 8.019133465 7.773846118 7.691323744 7.697499696 33414946 endolysin_glycosidase Bacteria phage LYSIS Bacteriophage Aeh1 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.46254576 7.754370846 7.364905698 7.356190371 7.718575018 7.779063997 7.837465794 7.562435145 7.623368402 258637180 SMR_antibiotics Antibiotic resistance transporter Pantoea sp. At-9b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 7.680939573 8.056414213 8.124495168 8.509018735 8.070288771 8.281058764 8.363122767 8.278099403 56809515 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 6.961405588 6.86701072 6.960390336 219676409 oxyR Stress Oxygen stress gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.623091683 7.315329829 6.939000393 6.681862447 166088697 ahpC Stress Oxygen stress Microcystis aeruginosa NIES-843 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 7.284927449 6.958684665 7.189299297 6.888288342 7.078924284 37521858 Catechol Organic Remediation Aromatics Other aromatics Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 7.310604246 7.252198859 6.994218305 6.832781457 7.045775375 7.372014811 7.145507301 7.031030801 7.322579035 50285063 ahpC Stress Oxygen stress Candida glabrata CBS138 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Nakaseomyces;species:Candida glabrata; 7.33109828 7.353158127 7.134674064 157847525 pilin virulence pilin Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 6.859214046 6.82998616 7.135636155 33391271 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.830717247 7.686633639 7.325136018 7.271406198 7.729336524 7.747367531 7.74378452 7.716868192 12054832 pstA Stress Phosphate limitation Streptomyces griseus subsp. griseus 8.191046012 7.873086527 7.813901025 7.719078529 8.226702415 8.119599568 7.980624982 7.425660802 7.949193399 262275667 groEL Stress Heat shock Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;species:Grimontia hollisae; 7.589844409 7.553692551 7.51991074 7.098963724 7.447453659 78186055 obgE Stress Radiation stress Chlorobium luteolum DSM 273 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon luteolum; 7.573803498 7.55019465 7.239189097 7.307029502 7.240038546 7.540880899 7.515732083 7.345520246 262408816 pstA Stress Phosphate limitation Bacteroides sp. 2_1_22 7.916142754 8.123183677 8.03766536 7.877866848 8.353969249 8.280449958 8.203497153 8.174911744 8.232046008 46578842 ChrA Metal Resistance Chromium Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 7.815821609 7.514038138 7.657169479 7.539959652 7.573997737 7.599786874 7.375258868 7.527861103 7.426003588 118037783 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.700247431 7.544616208 227078241 katA Stress Oxygen stress Corynebacterium lipophiloflavum DSM 44291 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium lipophiloflavum; 7.411890126 7.219188101 7.068485981 170605620 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.96041355 7.961886409 7.784013507 7.186787527 7.920768079 7.823863694 8.050403518 7.834661914 7.885713924 78102077 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.467477832 7.612630315 7.459775999 7.577910991 7.542415581 7.925489847 7.400665695 7.618874839 7.549582958 76056957 narG Nitrogen Denitrification uncultured bacterium 7.864225153 7.731077818 7.535425159 7.916716797 7.676133584 8.514618617 7.727510043 7.626419626 7.369338403 121606726 pchCF Organic Remediation Aromatics BTEX and related aromatics Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8.000706168 8.28867619 8.085120516 7.858975945 8.4558522 7.905319976 8.171008389 7.915464843 8.052709531 212224923 glnA Stress Nitrogen limitation Thermococcus onnurineus NA1 7.302118541 7.354599054 7.06418549 7.067240077 7.097803557 7.533418944 160705159 ara_fungi Carbon cycling Carbon degradation Hemicellulose Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 7.11124259 7.280108768 7.158088496 6.797030374 6.948982601 7.370315799 7.290659459 6.890587554 139003456 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.667223773 7.86592897 7.662815699 7.491590245 7.671543238 7.770219675 7.647333448 7.446722514 7.55995574 198277511 ara Carbon cycling Carbon degradation Hemicellulose Bacteroides plebeius DSM 17135 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides plebeius; 7.994084447 7.864916264 7.851993168 7.525535661 7.954275819 7.914609516 7.728438612 7.680213122 7.768628944 158141895 ChrA Metal Resistance Chromium Alkaliphilus oremlandii OhILAs superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus oremlandii; 7.96951971 7.950158582 7.731543416 7.534343381 7.948319799 8.055478681 7.799664341 7.775332729 7.859740834 240008584 fnr Stress Oxygen stress Methylobacterium extorquens AM1 8.170404542 8.102135648 7.786570952 7.417075256 8.147288602 7.968170672 7.868990561 7.784583942 7.969284197 146303585 4Fe_4S_ferredoxin Bioleaching Electron transport Metallosphaera sedula DSM 5348 7.104841999 6.980645677 33243185 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.676109824 7.603178653 7.263382764 7.694904227 8.177396928 7.682803155 7.540900394 7.774994991 146410847 nagI Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.610438188 7.584271627 7.586833679 7.330362645 7.826105726 7.77670978 8.088494109 7.377142211 148522057 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 7.812947294 8.333885778 8.138581314 7.393742136 8.455373401 8.050359802 8.268349907 8.335590732 8.334070247 88795925 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 6.974068925 6.837764266 7.231759332 7.185297064 6.588413268 7.495034134 228712591 Tet Antibiotic resistance other Bacillus cereus F65185 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 7.335951456 7.361042675 7.26231231 7.433624306 7.411359347 7.679032314 7.258457834 7.425925919 25011077 pstB Stress Phosphate limitation Streptococcus agalactiae NEM316 7.587087466 7.617358491 7.416802283 7.402634423 7.56518192 8.009482009 7.475317852 7.149702101 7.523924373 150036148 sox Sulphur Sulphur oxidation endosymbiont of Riftia pachyptila superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.494381751 7.804084548 7.619462472 6.994061378 7.490128647 7.653416952 7.302927805 7.574234275 46139685 nitA Organic Remediation Aromatics Other aromatics Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 7.526595096 7.507141415 7.437053246 7.226704913 7.495015349 7.763710428 7.532616563 7.747515568 7.777064423 93358542 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8.005916436 7.737115931 7.610101255 6.805648744 7.488534289 7.662034661 7.432979288 7.35738944 7.488454245 168699793 gyrB other category gyrB Gemmata obscuriglobus UQM 2246 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata;species:Gemmata obscuriglobus; 7.988037089 7.668135972 8.054624243 8.18594621 8.362764114 8.00618994 8.06413459 8.159699078 8.232220889 116671624 katE Stress Oxygen stress Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.52177517 7.19168857 7.746041267 7.98937749 7.717725839 7.557868977 7.984605821 110635425 GroES Stress Heat shock Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 7.456495302 7.48178905 7.233347202 7.31135756 7.36843522 7.65427593 7.260092606 7.183067483 7.449743115 162449194 dehH Organic Remediation Chlorinated solvents Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 7.095712523 7.149785082 7.244861903 7.572385972 7.680288603 6.987771187 7.5240828 152978075 oxyR Stress Oxygen stress Actinobacillus succinogenes 130Z superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus succinogenes; 7.194499368 7.196639389 7.103100138 7.661224514 121535084 pstC Stress Phosphate limitation Thermosinus carboxydivorans Nor1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Thermosinus;species:Thermosinus carboxydivorans; 7.034957268 7.132415616 7.148122107 6.843845774 7.452969766 7.258516565 7.251541222 126664847 ahpC Stress Oxygen stress Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 7.06745237 7.082380566 7.356014893 7.220198059 6.657406165 7.003346233 7.163177281 113478329 phn Organic Remediation Herbicides related compound Trichodesmium erythraeum IMS101 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Trichodesmium;species:Trichodesmium erythraeum; 7.076569468 6.888318881 84685053 exaA Organic Remediation Chlorinated solvents Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.829905834 7.941676767 8.151905218 8.19452463 7.697962073 7.631547677 7.948393821 7.851045707 126715659 atzB Organic Remediation Herbicides related compound Roseobacter sp. CCS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.607155368 7.819925221 7.84602963 7.489760153 7.637438793 7.828073778 7.57187443 170710805 srt virulence surface protein Clostridium perfringens B str. ATCC 3626 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium perfringens; 7.772328065 7.696081943 7.658658873 6.933125329 7.541825886 196208397 SmtA Metal Resistance Miscellaneous Cyanothece sp. PCC 8802 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.201352826 7.126731621 269788388 sigma_70 Stress Sigma factors Sphaerobacter thermophilus DSM 20745 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 7.920232521 7.777578049 7.819517474 7.62686996 7.765665267 7.984125012 7.962054859 8.247965638 8.37935108 260773342 hly virulence hemolysin Vibrio metschnikovii CIP 69.14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio metschnikovii; 7.088032923 6.996081799 68568652 catechol_B Organic Remediation Aromatics Other aromatics Sulfolobus acidocaldarius DSM 639 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus;species:Sulfolobus acidocaldarius; 7.305028598 7.274471961 145237054 nitro Organic Remediation Others Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.225935501 7.119713156 7.11948592 6.987729 6.855195662 118571429 bphD Organic Remediation Aromatics Polycyclic aromatics Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 7.270913709 6.962205125 7.299190514 7.415766583 6.907502888 7.921998229 7.164875316 7.527160636 159882913 sigma_70 Stress Sigma factors Hydrogenivirga sp. 128-5-R1-1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenivirga; 7.307920492 7.055293851 6.577101714 7.484749911 60493057 linC Organic Remediation Pesticides related compound Bacteroides fragilis NCTC 9343 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 7.432720639 7.328891774 7.328479066 7.634993773 7.414893028 7.643459378 7.345409555 161611272 catB Organic Remediation Aromatics BTEX and related aromatics Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.902469654 7.450263308 7.680697625 7.590541561 7.914065947 7.890254036 7.901895607 7.892273338 7.921856394 77456466 nmoA Organic Remediation Aromatics Nitoaromatics Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.626413017 7.746711453 7.878844856 7.887259826 7.857148472 7.739590205 7.759584948 7.632582911 7.576084777 116804544 nasA Nitrogen Assimilatory N reduction uncultured prokaryote 7.268207134 7.402661991 94502848 B_lactamase_C Antibiotic resistance Beta-lactamases Enterobacter cloacae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 7.420173326 7.345733623 7.348426053 7.045142855 7.41173966 154352010 glnA Stress Nitrogen limitation Bacillus amyloliquefaciens FZB42 7.753666943 7.7842229 7.652080717 7.526508941 7.84594928 8.115231323 7.82394048 7.705167933 7.973665145 269828740 endochitinase Carbon cycling Carbon degradation Chitin Vibrio alginolyticus 40B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 7.25969486 7.417334837 6.76841864 7.479709363 7.545370327 7.156771852 7.389662553 56551762 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Zymomonas mobilis subsp. mobilis ZM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Zymomonas;species:Zymomonas mobilis; 7.586466887 7.554588599 118572028 bphA Organic Remediation Aromatics Polycyclic aromatics Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 7.711252879 7.927071941 8.235786018 8.280973311 7.993871088 8.034612341 8.101075467 8.574217299 8.538249691 212555086 dmsA Organic Remediation Others Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 7.367594195 7.737981384 7.655331499 6.919091958 6.892976614 7.236942527 7.128326894 7.233479613 38640250 ssb Bacteria phage REPLICATION Aeromonas phage Aeh1 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.287638354 7.232475373 7.244069807 7.100571296 6.998435424 146401549 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 7.717924958 7.758463982 7.929257071 7.324343581 7.770852081 7.816060683 7.61288698 7.743780249 7.961411024 145253378 alkJ Organic Remediation Other Hydrocarbons Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.010379541 7.318533917 6.957738774 6.962975036 7.53789684 7.159007774 6.898649389 77359506 arcB Stress Oxygen limitation Pseudoalteromonas haloplanktis TAC125 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas haloplanktis; 6.912022272 6.889448838 77971822 linB Organic Remediation Pesticides related compound Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8.03888958 7.901057234 7.919722255 7.407708622 7.893547246 7.65421568 7.867882739 7.598366636 7.888652632 57641826 atzA Organic Remediation Herbicides related compound Thermococcus kodakarensis KOD1 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus kodakarensis; 7.484176395 7.472285643 7.025786833 7.219705658 7.42445955 7.50209504 7.192418621 238590246 ara_fungi Carbon cycling Carbon degradation Hemicellulose Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 6.972064491 6.75257961 6.783746423 12513981 TerZ Metal Resistance Tellurium Escherichia coli O157:H7 EDL933 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 7.820536843 8.251329297 7.758490734 7.166929538 7.872666307 7.689402102 7.494769026 7.512597671 7.810742843 219863816 sigma_70 Stress Sigma factors Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8.032620118 7.974334495 7.920632535 7.359345834 7.836373221 8.281088338 7.692262058 7.87495342 7.85609449 118656366 alkB Organic Remediation Other Hydrocarbons Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 8.440776163 8.73771307 8.511896626 8.001569826 9.038264655 8.27467357 8.718551804 8.715865233 8.806629184 52082399 katE Stress Oxygen stress Bacillus licheniformis ATCC 14580 7.381013302 7.405515234 7.242569539 6.917760684 7.080729296 7.358414997 7.526795536 7.225006495 7.481523419 40313563 APS_AprA Sulphur adenylylsulfate reductase uncultured bacterium 9.05974847 9.011388215 8.809143129 237801232 pstB Stress Phosphate limitation Pseudomonas syringae pv. oryzae str. 1_6 7.643831758 7.574002844 7.496439077 7.929887583 7.806880286 7.929480822 7.922979912 228612912 endochitinase Carbon cycling Carbon degradation Chitin Bacillus cereus AH621 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 6.993570465 7.430096649 6.932670914 17933462 nifH Nitrogen Nitrogen fixation Desulfomicrobium baculatum superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfomicrobiaceae;genus:Desulfomicrobium; 7.82034941 7.880449826 7.361052679 7.290596893 7.679321275 56475801 pimF Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 7.301063667 7.318947852 7.652448485 7.756450018 7.528239954 7.951791468 7.559164344 7.735630768 7.791124091 229542658 AceB Carbon cycling Carbon degradation others Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 7.383240961 7.248040323 7.22809399 6.849528627 7.180781605 7.44761566 7.127125797 6.979886007 7.058388861 254486661 SMR_antibiotics Antibiotic resistance transporter Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.304441401 7.08591424 7.203106589 6.920593909 169633578 ppk Phosphorus Phosphorus utilization Acinetobacter baumannii SDF superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 6.916681534 7.181332506 6.994936532 91779863 pnbA Organic Remediation Aromatics Nitoaromatics Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.721661902 7.605943109 7.596155017 7.531999985 7.622485963 7.79257299 7.915984615 7.884310536 221722791 glnA Stress Nitrogen limitation Agrobacterium radiobacter K84 7.58442802 7.57140094 7.445998674 7.46581949 7.728342623 7.808172293 7.784638113 7.371424486 7.330194542 156976058 pulA Carbon cycling Carbon degradation Starch Vibrio harveyi ATCC BAA-1116 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 7.833044743 7.906635702 8.211315844 8.353356955 8.169766696 7.819264233 7.886935348 7.8502388 7.809575175 139003197 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.833776627 7.742298946 7.743599023 7.07600969 6.907882134 7.264738992 7.375551922 7.443800154 109290298 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.375265532 7.212361679 7.171726182 6.861611965 7.331390955 7.588879661 7.572619788 7.075960192 7.356085132 119483804 linB Organic Remediation Pesticides related compound Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 7.58707309 7.513985384 7.342474455 7.295532466 7.407485221 7.698966515 7.138598127 6.996782172 7.729503823 77965526 CopA Metal Resistance Copper Burkholderia sp. 383 7.685567803 7.513846474 7.456897928 7.33678976 7.426988266 7.699509393 7.456382887 7.65773593 7.59325158 56479873 glnA Stress Nitrogen limitation Shigella flexneri 2a str. 301 7.738753623 8.364684432 8.208676266 7.780624145 8.427616715 7.955290496 7.812257081 7.805044966 8.004366261 114320976 sigma_38 Stress Sigma factors Alkalilimnicola ehrlichii MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 7.653037209 7.716087611 7.660098794 7.558776314 7.715295446 8.0776327 7.596468654 7.456652417 7.655823568 148569788 obgE Stress Radiation stress Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 7.749394551 7.451255327 7.380563407 6.712553115 6.925299635 7.393864565 7.06432061 7.316113087 7.472980214 28270518 ppx Phosphorus Phosphorus utilization Lactobacillus plantarum WCFS1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus plantarum; 6.873803596 6.884066827 7.041115281 6.533573417 7.30119508 114563933 phoB Stress Phosphate limitation Shewanella frigidimarina NCIMB 400 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella frigidimarina; 7.298700798 7.082498233 7.073443733 7.055907411 7.448583294 7.017717386 7.37407052 119773428 pulA Carbon cycling Carbon degradation Starch Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 7.380016264 7.341607228 7.237906606 7.354816815 7.509339298 150035081 ChrA Metal Resistance Chromium Arthrobacter sp. Chr15 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.4711907 7.41120276 7.386538677 7.134455512 7.486417341 7.433377711 7.489348997 7.238465662 7.414984652 87136507 proO Organic Remediation Aromatics Other aromatics Novosphingobium aromaticivorans DSM 12444 7.983033322 7.667300537 7.573289351 7.306968942 7.6591488 7.97610379 7.602818079 7.70147701 7.790581504 260939345 sigma_38 Stress Sigma factors Vibrio orientalis CIP 102891 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 7.316821589 7.413705815 7.377747502 6.822823023 7.522906187 55978104 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.564247175 7.587353347 7.332249222 7.032536359 7.116999256 7.734844914 7.753430743 7.254758687 186687052 sigma_70 Stress Sigma factors Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 7.410033191 7.523828507 7.254916905 7.231165436 7.459864089 7.634818151 7.442490793 242773759 MFS_antibiotic Antibiotic resistance transporter Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 7.46846434 7.37793565 7.229374544 7.070975064 6.661759647 7.445642905 256533546 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 7.244447826 7.228074438 6.91087945 6.864943973 7.494187079 227061966 ahpC Stress Oxygen stress Thermobaculum terrenum ATCC BAA-798 superkingdom:Bacteria;genus:Thermobaculum;species:Thermobaculum terrenum; 7.746985507 7.454022236 7.312535593 7.207270069 7.082617551 7.619144939 7.21018434 7.048890007 7.24186044 94471023 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.470423733 7.428137222 7.282178391 7.378822532 7.025865082 7.850418063 7.531697691 7.272499396 7.493247262 190572195 B_lactamase_C Antibiotic resistance Beta-lactamases Stenotrophomonas maltophilia K279a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 8.272165125 7.93885202 7.34665648 7.127951785 7.334268083 7.236316522 7.316748961 7.190983429 150029977 AceB Carbon cycling Carbon degradation others Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 7.23640312 7.20186289 7.438399893 6.932061555 6.970520056 7.299592267 6.926125782 52348249 Al Metal Resistance Aluminum Bacillus licheniformis DSM 13 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 7.489289781 7.49240559 7.427550703 6.945856618 6.90160242 7.390644332 6.939321868 7.334074658 67942333 GroES Stress Heat shock Streptococcus criceti superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 7.20048596 6.94328668 6.748850984 7.278757962 157844955 katE Stress Oxygen stress Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 7.161642028 7.357080025 163644672 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. enrichment culture clone RC41(RCRdA11) superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.404007557 7.158411488 7.102047097 7.439325564 7.123729344 7.559369865 10637971 MSAD Organic Remediation Others Pseudomonas pavonaceae 7.499589094 7.530692813 7.478707357 7.546107562 7.77950718 7.882288146 7.686672577 7.330599717 16798077 mcrA Carbon cycling Methane Methane production Methanofollis liminatans superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanofollis; 7.991748121 7.269609147 7.324617391 7.359791157 15221339 bclA Organic Remediation Aromatics Aromatic carboxylic acid Arabidopsis thaliana superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Streptophyta;order:Brassicales;family:Brassicaceae;genus:Arabidopsis; 7.260123148 7.319685915 7.880339635 7.818164672 7.396400792 7.985998312 7.523434628 7.184215852 7.69331968 194335927 sox Sulphur Sulphur oxidation Pelodictyon phaeoclathratiforme BU-1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 7.189114019 7.413274742 7.308795161 7.342801838 7.611665645 7.51427757 7.526532474 7.346625647 126728090 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 7.497001598 7.906630641 7.911436648 8.090815048 7.250916799 8.16914743 7.788438105 7.699759985 7.980437893 188535573 pstS Stress Phosphate limitation Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 7.407440082 7.100107397 122090102 ZitB Metal Resistance Zinc Yersinia enterocolitica subsp. enterocolitica 8081 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 7.284417994 7.149518688 186466632 cadBD Metal Resistance Cadmium Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 7.523310051 7.424331961 6.613998673 7.494690211 67940431 dsrA Sulphur sulfite reductase Chlorobium phaeobacteroides BS1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 8.052159854 7.927159484 7.706991485 7.673421625 7.932250819 8.26001923 8.056488382 8.060269435 7.467929464 115432156 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.080410738 7.252505972 7.241729793 6.983273879 6.871366395 109900059 pchA Organic Remediation Aromatics BTEX and related aromatics Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 7.669545729 7.63789726 7.584216859 7.114489272 7.699092661 7.723895682 7.686058193 7.415855291 7.722777867 146274868 tutFDG Organic Remediation Aromatics BTEX and related aromatics Pelotomaculum thermopropionicum SI superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Pelotomaculum;species:Pelotomaculum thermopropionicum; 7.429348026 7.154445072 7.155014682 225792880 glucoamylase Carbon cycling Carbon degradation Starch Acidobacterium capsulatum ATCC 51196 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteria;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 7.209859796 7.460906585 7.403864847 6.707435624 7.276010335 6.968067513 7.681546065 186465824 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 7.207579715 7.364846801 7.257675425 6.510123921 6.956449068 7.596176799 7.257626896 7.407810157 7.431561363 70780035 groEL Stress Heat shock Streptococcus sobrinus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 7.386054894 7.08077032 27356030 cap virulence capsule Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.995692362 8.171962158 8.048606572 7.964437567 7.642905604 7.467261266 7.70068684 7.808906865 118470813 scnABC Organic Remediation Others Mycobacterium smegmatis str. MC2 155 7.489537199 7.574745715 7.703341387 7.434491295 7.491598962 7.954445749 7.335013973 7.881174949 7.545800955 257476382 fnr Stress Oxygen stress Eggerthella lenta DSM 2243 7.26941071 7.269603681 6.771258962 6.801607737 7.394403595 109640289 rd Organic Remediation Chlorinated solvents Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 7.206104768 7.205986897 223962380 pstB Stress Phosphate limitation Holdemania filiformis DSM 12042 7.276902067 7.073167799 7.031194061 6.566423447 7.065992836 7.526079995 7.365054395 7.149518641 7.521052754 148571195 pimF Organic Remediation Aromatics Aromatic carboxylic acid Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 7.148707159 7.01088702 7.645496916 6.881036242 7.223231196 7.327486001 7.247144715 7.763053978 182630676 terminase_large_subunit Bacteria phage REPLICATION Enterobacteria phage EPS7 order:Caudovirales;family:Siphoviridae; 7.545398878 7.30004511 6.956879322 7.54153185 6.989957414 6.956551166 7.227551219 85373060 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Erythrobacter litoralis HTCC2594 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 7.297554067 7.416168647 7.458081713 6.811174288 6.996096832 7.430762615 7.540475451 7.539629523 7.372557783 154758535 dsrA Sulphur sulfite reductase uncultured Desulfovibrio sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 7.51473751 7.350969725 7.720486801 7.311900258 7.636162314 7.52128875 7.820755981 7.728318072 254968989 pstS Stress Phosphate limitation Acidithiobacillus caldus ATCC 51756 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 7.838017233 7.670735593 7.464074345 7.406766027 7.551484404 7.554145619 7.51832387 7.534709322 39983506 sigma_38 Stress Sigma factors Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 7.758945715 7.525978776 7.65708766 7.655220144 7.589695878 7.800713691 7.342751384 7.448438588 116610968 cap virulence capsule Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.63024852 7.173732982 7.035870786 7.293420824 7.676410995 7.446421255 7.680726896 7.65998937 192360995 ahpF Stress Oxygen stress Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 7.425354005 7.490438498 7.55284011 7.48090034 7.453227549 7.986895401 7.111096688 7.718877697 7.836160497 83361911 nreB Metal Resistance Nickel Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 7.808912077 7.599763304 7.792391022 7.49305992 7.665325505 7.911915003 7.923736862 8.168517798 239941052 hrcA Stress Heat shock Streptomyces roseosporus NRRL 15998 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces filamentosus; 7.540132439 7.371614125 7.786512002 7.172426784 7.455245534 7.907597024 7.361609419 7.581878594 89573722 endochitinase Carbon cycling Carbon degradation Chitin Lecanicillium lecanii superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Cordycipitaceae;genus:Torrubiella;species:Torrubiella confragosa; 6.901015165 7.395486473 7.225318854 6.920428022 7.307563574 6.863175642 46307833 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.305986982 7.313034649 7.268062641 7.350275064 121495596 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.676694876 7.633351561 7.589589451 7.054579409 7.603350151 7.616299576 7.671437487 7.29183474 7.61362563 254444558 xylA Carbon cycling Carbon degradation Hemicellulose Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 7.496476478 7.196320789 220932962 glnR Stress Nitrogen limitation Halothermothrix orenii H 168 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Halanaerobiales;family:Halanaerobiaceae;genus:Halothermothrix;species:Halothermothrix orenii; 7.232316268 6.687123065 6.826589883 223585981 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.074357747 7.909137156 7.776400456 7.784306946 8.260121145 7.944025643 7.732470329 8.081385885 197313977 SMR_antibiotics Antibiotic resistance transporter Vibrio fischeri MJ11 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Vibrio fischeri; 7.581626081 7.423622603 7.367598698 120594774 pilin virulence pilin Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 7.70530092 7.614029022 7.552436997 7.492919087 7.407397128 7.783428652 7.610051648 7.612081728 7.308785181 161328754 CopA Metal Resistance Copper Shewanella benthica KT99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella benthica; 7.13770414 7.115842577 6.784798042 7.384897718 193222233 sigma_70 Stress Sigma factors Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 7.559400874 7.207101391 6.995783642 7.070774947 7.909528987 260938101 endochitinase Carbon cycling Carbon degradation Chitin Vibrio orientalis CIP 102891 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 7.183705998 7.131011745 7.124144944 7.091881666 7.510773198 7.074169325 6.901407737 148837479 proV Stress Osmotic stress Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 7.420129379 7.281102029 7.387779041 6.740224849 6.838569913 7.395696211 7.160239627 7.114126435 149129466 sigma_24 Stress Sigma factors Bacteroides caccae ATCC 43185 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides caccae; 7.774619185 7.468006901 7.294780507 7.618508749 7.317285898 7.20372938 87286696 sigma_24 Stress Sigma factors Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 7.732812641 7.449200495 7.260120752 7.036005839 7.142060081 7.51627998 7.019338493 7.172894324 91799059 aclB Carbon cycling Carbon fixation Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 7.600983746 7.193804791 7.137276737 6.806448495 7.463230741 7.464577616 7.703279191 7.234982464 7.216356098 19913945 MFS_antibiotic Antibiotic resistance transporter Methanosarcina acetivorans C2A superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina acetivorans; 7.2116701 7.093942924 6.882982168 7.11847079 7.468070162 7.468710584 6.898593246 7.388793548 146865100 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Shewanella baltica OS223 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 7.160750786 7.038760597 242347882 mannanase Carbon cycling Carbon degradation Hemicellulose Paenibacillus sp. BME-14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.500808321 7.333226954 7.20589607 6.968258077 7.492703086 7.474405587 7.207008923 116695753 mdlB Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 7.605397777 7.617939974 7.522876015 7.612900868 7.743337101 7.94473552 7.791948197 8.007454416 7.817901381 186472644 mauAB Organic Remediation Herbicides related compound Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.373623243 7.579158346 7.624687896 7.083499311 7.155415946 45386107 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 7.061030534 6.819726734 7.569120293 227182866 phoA Stress Phosphate limitation Corynebacterium glucuronolyticum ATCC 51866 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glucuronolyticum; 7.18134657 7.708840995 7.183486849 6.939525444 7.322664337 7.366744899 7.132183591 7.178914659 145249250 glnA Stress Nitrogen limitation Aspergillus niger 7.292641086 7.450172282 7.4727646 7.365892686 8.011711211 7.619076766 7.542236347 7.193710966 7.552135334 169286 mnp Carbon cycling Carbon degradation Lignin Phanerochaete chrysosporium superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 7.851027422 8.147430449 8.028858374 7.892215351 8.236494855 8.12730738 8.093842224 8.1240084 8.213182519 145960495 endochitinase Carbon cycling Carbon degradation Chitin Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 7.846786484 7.831917981 7.956087585 7.588301976 8.278808571 8.18780383 8.050178591 7.931221624 167711480 tutFDG Organic Remediation Aromatics BTEX and related aromatics Clostridium sp. SS2/1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 7.155843493 6.98244106 126106100 exaA Organic Remediation Chlorinated solvents Rhodobacter sphaeroides ATCC 17029 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 7.836268817 7.611726072 7.208674701 8.082412883 7.916262644 7.758664458 7.343629619 7.730687528 225046668 sigma_24 Stress Sigma factors Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 7.581832253 7.365255917 7.352515632 7.4553766 7.480765289 7.242922628 8247215 amyA Carbon cycling Carbon degradation Starch Halomonas meridiana superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 7.118904889 7.007306704 68535958 FTHFS Carbon cycling Acetogenesis Corynebacterium jeikeium K411 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 7.8875061 8.40501713 8.134321518 7.860499178 8.501384273 8.013980734 8.203986187 7.779934149 8.370615703 188591206 mhqA Organic Remediation Aromatics Nitoaromatics Cupriavidus taiwanensis 8.126096963 7.762819825 8.005462725 7.62743296 8.241292618 8.075294617 7.865288529 7.972008414 7.579825419 55978136 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.1341769 7.223397352 7.21465548 6.877793966 6.767784452 7.613325259 237749959 toxin virulence toxin Helicobacter bilis ATCC 43879 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter bilis; 7.186781704 7.25468068 6.896876867 7.534380585 118434812 oxyR Stress Oxygen stress Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 7.556101626 7.587841594 7.338285368 7.464329121 7.273125002 7.492458493 219537014 rd Organic Remediation Chlorinated solvents Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 7.29445271 7.056659283 212639257 mer Metal Resistance Mercury Anoxybacillus flavithermus WK1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Anoxybacillus;species:Anoxybacillus flavithermus; 7.10528086 7.124824374 7.163694729 146401429 nitA Organic Remediation Aromatics Other aromatics Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 7.255776683 7.280061797 7.659095433 7.559223632 7.42119915 8.118704794 16503486 napA Nitrogen Dissimilatory N reduction Salmonella enterica subsp. enterica serovar Typhi superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 7.686699643 7.936021476 7.684342663 7.987791538 8.012243411 8.107714991 7.813374513 7.903097659 167668402 ChrA Metal Resistance Chromium Anaerotruncus colihominis DSM 17241 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Anaerotruncus;species:Anaerotruncus colihominis; 7.197532555 7.076879396 7.096583629 7.2826819 47575190 ChrA Metal Resistance Chromium Rubrivivax gelatinosus PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 7.81301794 7.598418343 7.186726029 7.549685699 7.340047049 7.397940535 241907925 ahpF Stress Oxygen stress Desulfovibrio vulgaris RCH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 7.79889166 7.58354516 7.300747606 7.299275751 7.334949874 7.733451276 7.38912945 7.180918501 212540544 pcpE Organic Remediation Herbicides related compound Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 6.887629411 7.090885256 7.490092168 6.806396071 7.298636089 6.914238324 7.357870335 148277993 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.069932972 7.130110719 7.219380387 7.071259728 6.667419401 7.024385394 22900882 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 8.378350161 8.306864057 8.301664198 7.831512238 8.091207257 8.063542649 8.117968963 7.873791693 110634916 fnr Stress Oxygen stress Mesorhizobium sp. BNC1 7.396435762 7.523962099 7.051385144 7.580174002 7.631450869 7.597010046 7.531403808 7.42676709 157373483 cytochrome Energy process Energy process Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 7.614941577 7.763105351 7.555327389 6.802663812 7.887005038 7.787886866 7.643784208 7.598589706 7.648429715 91780959 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 7.309959627 7.468547772 7.303921384 7.166563601 6.9899179 7.116236186 7.113030573 7.555241398 229861497 endochitinase Carbon cycling Carbon degradation Chitin Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 7.57541301 7.581025563 7.560243131 7.877257647 7.884495561 7.934422556 7.912613479 8.007909354 126221950 nmoA Organic Remediation Aromatics Nitoaromatics Burkholderia pseudomallei 668 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 7.411761759 7.08263214 7.538952703 6.943585122 7.248670237 7.627584467 7.411098445 7.530329777 27348357 nagI Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.913474098 7.775513645 7.06950115 7.462322959 7.601598415 7.424141653 194010808 TerD Metal Resistance Tellurium Bacillus pumilus ATCC 7061 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pumilus; 7.586555489 7.387315412 6.93114343 161324061 gyrB other category gyrB Kordia algicida OT-1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Kordia;species:Kordia algicida; 7.208501901 7.28372467 6.930890597 6.793554839 7.452873876 149374333 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Marinobacter algicola DG893 7.528675348 7.150149152 7.227175519 6.93412192 7.4915472 7.042074619 7.164904332 126208721 gyrB other category gyrB Actinobacillus pleuropneumoniae L20 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus pleuropneumoniae; 7.105053822 6.807164531 6.916198059 6.899403062 7.282486911 134051205 APS_AprB Sulphur adenylylsulfate reductase Desulfotomaculum reducens MI-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum reducens; 6.949007271 6.697539687 7.074016711 6.66315162 7.315153089 6.93800575 6.836495052 157963251 cytochrome Energy process Energy process Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 7.106188434 6.877095686 7.104262267 6.932775263 6.619234116 7.442366125 157011580 APS_AprA Sulphur adenylylsulfate reductase uncultured bacterium 7.120460181 7.248872064 7.14103524 6.766568002 12746408 endochitinase Carbon cycling Carbon degradation Chitin Serratia liquefaciens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 8.092357161 7.120424926 7.146535095 6.958640369 6.781517247 7.254913057 90954559 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.377789858 7.177906112 7.120018432 7.827869191 7.476269757 7.182594242 7.47432653 238024610 iro virulence Burkholderia glumae BGR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia glumae; 7.556409989 7.433309769 7.218192891 7.574101175 7.209256718 8.122374574 7.346534954 7.530257834 150843042 tfdA Organic Remediation Aromatics Chlorinated aromatics Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 7.48849474 7.722730951 7.478909059 7.634753709 7.405505732 7.858364439 7.942689048 7.442110025 7.310236377 227505737 pcc Carbon cycling Carbon fixation Corynebacterium striatum ATCC 6940 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium striatum; 8.352336451 7.919405352 8.188853618 7.912045928 8.071931603 8.217626346 209518328 pilin virulence pilin Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.404902078 7.647434633 7.460045093 7.460253115 7.403384726 7.87302238 7.474277095 7.535165743 227358383 narI Stress Oxygen limitation Proteus mirabilis ATCC 29906 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 7.315574554 7.037901518 7.070266582 171778103 CopA Metal Resistance Copper Streptococcus infantarius subsp. infantarius ATCC BAA-102 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus infantarius; 7.425096632 7.183011783 7.373494377 7.496059958 7.2613898 7.526336089 262082886 cap virulence capsule Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Haliangiaceae;genus:Haliangium;species:Haliangium ochraceum; 8.033836362 7.912346841 7.663394934 7.825084464 7.961001746 7.634880625 7.730115248 7.701285816 82791421 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 7.472962751 7.584129288 7.482666529 7.431037595 7.057860436 7.832676955 7.078397276 7.595965485 7.684603001 108766669 sigma_38 Stress Sigma factors Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 7.45209662 7.923810354 7.782194161 7.714487367 7.745548563 7.776138596 16082132 arsenic_resistance_gene Bioleaching Metal Resistance Thermoplasma acidophilum DSM 1728 7.176739199 6.750821167 7.345330104 227295594 cda Carbon cycling Carbon degradation Starch Bacillus acidopullulyticus 7.438746637 7.253171711 7.215944407 6.856444423 7.507250018 7.432292036 7.183582724 7.645094231 211959733 pcaG Organic Remediation Aromatics Other aromatics Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 7.357609753 7.318552879 6.753157041 7.208260446 221722108 grpE Stress Heat shock Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.944020816 7.622936154 7.078133926 7.370067683 8.058554624 8.083660058 7.41323446 7.965281228 150397201 nhh Organic Remediation Aromatics Nitoaromatics Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 7.554498257 7.789675013 7.533031325 8.049444996 7.893848252 8.043761262 7.83749382 7.812785319 149736178 cda Carbon cycling Carbon degradation Starch Eubacterium ventriosum ATCC 27560 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium ventriosum; 6.982399345 6.653263233 23392977 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.113786144 7.33708916 85689524 fnr Stress Oxygen stress Erythrobacter sp. NAP1 8.228982427 8.212024116 7.952549389 8.142781372 8.55349862 8.612663151 8.119424683 7.927117821 118014241 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 7.305232674 7.151296381 6.984726021 6.868651586 7.4584931 7.329011741 6.974009432 7.150251988 114561738 cytochrome Energy process Energy process Shewanella frigidimarina NCIMB 400 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella frigidimarina; 7.496242128 7.725696821 7.736239116 7.670128004 7.339293022 8.139617261 7.69681611 7.792221549 7.728629084 23347674 phn Organic Remediation Herbicides related compound Brucella suis 1330 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Brucella;species:Brucella suis; 7.135155058 7.217996245 6.575145865 7.468510607 7.083976892 7.00198016 157145855 SMR_antibiotics Antibiotic resistance transporter Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 7.771340399 7.828649026 8.085717696 7.579076348 8.001661884 253574730 ara Carbon cycling Carbon degradation Hemicellulose Paenibacillus sp. oral taxon 786 str. D14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 7.98081243 7.831240666 7.687438912 7.602699106 7.916949266 8.104861517 7.916451367 8.018235282 41058920 ChnD Organic Remediation Other Hydrocarbons Brachymonas petroleovorans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Brachymonas; 7.683018998 7.589526112 83575668 ahpC Stress Oxygen stress Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 7.7686583 7.613246192 7.402885877 7.161689148 7.351884447 7.506115992 7.169498812 7.510121328 7.16190086 255020141 hly virulence hemolysin Acidithiobacillus caldus ATCC 51756 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 7.378421843 7.645421623 7.819875359 7.368388389 7.453112986 7.975982773 7.401494999 7.624261622 7.537262124 71847086 CopA Metal Resistance Copper Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 7.850076509 7.826977507 7.638066626 7.562447812 7.904865833 7.805707571 7.820450246 7.723853952 7.408474233 113868114 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 7.131992042 7.392986993 7.35093511 6.884944577 7.767843706 78193286 silC Metal Resistance Silver Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 7.405637028 7.622951386 7.640214571 7.204414641 7.769448842 7.852454954 7.482190328 7.137211429 7.544714513 166714126 vanA Carbon cycling Carbon degradation Others Xanthomonas oryzae pv. oryzicola BLS256 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 8.456928132 8.451585517 8.121912132 7.528195343 8.423014045 7.925021733 8.109368006 8.078243768 8.630748733 85710830 sigma_32 Stress Sigma factors Idiomarina baltica OS145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina baltica; 7.29157354 7.2668771 7.042733564 70729709 glnA Stress Nitrogen limitation Pseudomonas fluorescens Pf-5 7.115363519 7.141633263 117924770 ahpC Stress Oxygen stress Magnetococcus sp. MC-1 superkingdom:Bacteria;phylum:Proteobacteria;genus:Magnetococcus; 7.409539809 7.282178529 7.064662269 110347011 ArsC Metal Resistance Arsenic Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 7.729174312 7.865972429 7.500421451 7.467059137 8.108445938 8.01842665 7.887212777 7.537154082 7.801515488 260598191 narJ Stress Oxygen limitation Cronobacter turicensis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter; 7.365216212 7.218218309 7.049166248 6.934500014 6.935403832 7.510808458 7.210254805 6.927446709 89361852 bclA Organic Remediation Aromatics Aromatic carboxylic acid Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 7.460891811 7.330242802 7.285882956 7.303558376 7.73286746 7.766378206 7.175800575 7.465918381 196156851 mer Metal Resistance Mercury Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 7.5705267 7.301578589 7.463690759 7.064950727 7.442135908 7.287897146 7.364161988 84779140 ahpC Stress Oxygen stress Sodalis glossinidius str. 'morsitans' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Sodalis;species:Sodalis glossinidius; 7.582311698 7.531513677 7.243764254 7.600595968 7.568394762 7.668521416 134101910 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 7.621670111 7.72218593 7.45880135 7.42623126 7.836607505 7.96317522 7.962349591 7.605458159 7.642754099 108805257 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 7.832506268 8.083876078 8.410296723 8.075471287 8.315603636 8.322693779 7.975907237 8.244595668 7.887078969 123967445 xylG Organic Remediation Aromatics Aromatic carboxylic acid Sphingobium yanoikuyae superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 9.1156912 9.156610771 9.126012063 9.191308794 8.850356338 9.455499983 9.003225124 9.261985986 9.46956622 6014661 pnbA Organic Remediation Aromatics Nitoaromatics Ralstonia pickettii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 7.691975556 7.829676503 7.659503405 7.242795758 7.696159297 7.836985443 7.758455843 7.606144631 7.560057069 67088342 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 7.774418636 7.258581541 7.553864759 8.086238895 7.642636361 7.708176842 7.907402302 7.871306505 124492979 TerD Metal Resistance Tellurium Lactococcus lactis subsp. cremoris MG1363 7.329431163 7.31659892 7.383403957 6.767431924 6.979849497 7.369606855 119355562 obgE Stress Radiation stress Chlorobium phaeobacteroides DSM 266 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 7.077511531 7.290472216 6.991747489 7.158095338 7.469854088 150962608 Mex Antibiotic resistance transporter Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 7.483162484 7.35343552 7.195455864 6.728906642 7.052632197 7.44449846 7.049308999 6.889388223 7.262007645 219550380 ppk Phosphorus Phosphorus utilization Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.656827817 7.595439541 7.552401108 7.24640024 7.44141666 7.606665501 7.312766637 7.519145266 7.600100349 91783045 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.277585332 7.503797774 7.683251229 7.008658447 7.23305811 7.844201445 7.350570712 7.288858178 110823824 nbz Organic Remediation Aromatics Nitoaromatics Rhodococcus jostii RHA1 7.91217412 7.632718043 7.951304282 7.723925362 8.120656271 8.023267984 8.247152528 7.890188472 7.998334862 229495531 gdh Nitrogen Ammonification Porphyromonas endodontalis ATCC 35406 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas;species:Porphyromonas endodontalis; 7.63704562 7.622946667 7.888124163 7.573247386 7.370612359 7.457979761 86609530 ppk Phosphorus Phosphorus utilization Synechococcus sp. JA-2-3B'a(2-13) superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.67666444 7.537848759 7.462135025 7.43314382 7.387446904 7.575283008 7.629141393 7.617146673 7.346583645 183218796 pstB Stress Phosphate limitation Bifidobacterium animalis subsp. lactis HN019 7.56674413 7.113628465 7.560880673 178467589 amyA Carbon cycling Carbon degradation Starch Streptomyces griseus subsp. griseus NBRC 13350 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 7.759538556 7.876266559 7.830654919 7.69634236 8.13094012 8.124972848 8.044441993 7.759517162 7.918891983 104304381 APS_AprA Sulphur adenylylsulfate reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.411333129 7.615804233 7.261123475 7.547813637 7.513992465 7.565960977 7.785944159 7.154672112 2649217 pstA Stress Phosphate limitation Archaeoglobus fulgidus DSM 4304 7.431801309 7.247586744 7.351133676 7.168252762 7.058297754 7.575301324 7.279137089 7.286286849 196482322 tfdA Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 7.838499441 7.669592782 7.341597051 7.851255264 7.80008907 8.592603283 8.347032153 119713520 Arylest Organic Remediation Aromatics Other aromatics uncultured marine bacterium EB0_35D03 superkingdom:Bacteria; 7.213152265 7.246316722 6.906199257 193201291 holin_type_2 Bacteria phage LYSIS Enterobacteria phage BA14 order:Caudovirales;family:Podoviridae;genus:T7-like viruses; 7.250148806 7.073036914 154183426 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.27770538 7.222944748 228470554 ahpF Stress Oxygen stress Porphyromonas uenonis 60-3 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas;species:Porphyromonas uenonis; 7.244473882 7.543941342 7.732045035 257152455 ABC_antibiotic_transporter Antibiotic resistance transporter Lactobacillus rhamnosus Lc 705 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 7.10372647 7.232818612 78360128 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Shewanella sp. PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 7.009658447 6.938554578 187973504 CopA Metal Resistance Copper Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7.326450175 7.345509547 146194169 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.042373385 8.520786758 8.105797558 7.710722667 8.18913085 7.9030236 8.085311789 8.030936509 260610787 ahpC Stress Oxygen stress Vibrio metschnikovii CIP 69.14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio metschnikovii; 7.306709299 7.270571244 6.75847638 7.509320321 148245084 grpE Stress Heat shock Candidatus Vesicomyosocius okutanii HA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:Calyptogena okutanii thioautotrophic gill symbiont; 7.387603132 6.978947687 160900916 obgE Stress Radiation stress Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.795037079 7.614575 7.814989939 7.782377893 7.622260855 7.47770002 89053927 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 7.694724833 7.379248327 8.012973101 7.490864667 7.363158474 218679272 amyA Carbon cycling Carbon degradation Starch Rhizobium etli CIAT 894 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.147255028 7.140295036 7.314051144 7.549012831 7.942394056 7.38015146 7.16669572 99083259 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.304288287 7.442416688 7.222471524 7.134112798 7.264087588 7.752497305 7.306875688 7.33559363 7.408336375 56961903 clpC Stress Protein stress Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 7.238410892 6.974829974 7.121670901 7.112573376 6.902839971 7.179471524 15678505 pstB Stress Phosphate limitation Methanothermobacter thermautotrophicus str. Delta H 7.9420145 7.961706951 7.360505626 7.636644186 7.905881844 7.622581979 7.906321058 7.196661618 8.236575363 254476338 ureC Nitrogen Ammonification Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.616578532 8.178704955 8.054518727 8.228615059 8.841226224 8.047578166 8.846372335 8.64097907 8.530019679 260607810 grpE Stress Heat shock Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 7.511431821 7.410085829 7.690527039 7.152858364 7.59323875 7.750701024 7.724562126 7.628973396 210074299 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.014994596 7.140205052 7.21324278 7.725420082 6.991198837 7.770609199 33456989 nagG Organic Remediation Aromatics Aromatic carboxylic acid Cycloclasticus sp. A5 7.085261393 7.627474298 7.325910817 6.987568804 7.417069819 15597770 alkB Organic Remediation Other Hydrocarbons Pseudomonas aeruginosa PAO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 7.241814406 7.001014516 7.652317881 7.792545872 7.490250293 7.873840354 7.526261883 7.856145491 151302188 APS_AprB Sulphur adenylylsulfate reductase Desulfothermus naphthae 7.292673035 7.581505117 7.353207989 7.345393651 7.097196249 7.528482046 7.344974157 7.152752333 118049117 tfdA Organic Remediation Aromatics Chlorinated aromatics Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.548236424 7.408904416 7.556049168 6.880405322 7.5052505 7.501651319 7.026082477 7.326165651 7.44206861 111021297 fnr Stress Oxygen stress Rhodococcus jostii RHA1 7.091627074 6.905690651 6.989498577 7.156920509 6.929364947 7.118002253 71038932 mer Metal Resistance Mercury Psychrobacter arcticus 273-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter arcticus; 7.419302301 7.03329283 7.259967813 39945314 pheA Organic Remediation Aromatics Other aromatics Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 7.551757551 7.130791344 7.181341061 7.398011168 225194107 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium 7.572944451 7.756723566 7.616112014 7.285066577 7.660472338 7.805690631 7.642527854 7.524119595 7.600875566 41407942 mer Metal Resistance Mercury Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 8.049922541 8.216898243 7.850088678 7.485517454 7.865917498 7.790682615 7.848086058 8.04437268 154251750 glnA Stress Nitrogen limitation Parvibaculum lavamentivorans DS-1 7.777042894 7.710469112 7.899909895 7.3937199 7.033222279 7.795701457 90954581 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.747420633 8.062408564 7.522912154 7.419276012 8.352442611 8.29703513 8.06393856 8.12728213 33668988 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Rhodococcus erythropolis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7.124508414 7.152451947 7.200651539 6.957532553 7.18246268 7.522709106 7.384687503 7.215576312 15676294 fnr Stress Oxygen stress Neisseria meningitidis MC58 7.527606559 7.290661156 7.309848479 7.158560029 186683330 glucoamylase Carbon cycling Carbon degradation Starch Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 7.909583036 7.28213754 7.235495035 7.313219452 7.431865953 82568644 alkJ Organic Remediation Other Hydrocarbons Rhodococcus erythropolis 8.466661049 8.580623827 8.483588007 7.837303803 8.870377363 8.213331828 8.546476584 8.530371182 8.522787881 213971300 phn Organic Remediation Herbicides related compound Pseudomonas syringae pv. tomato T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 7.856479052 7.891813858 7.607527997 7.983199386 7.57211044 8.038288702 7.82685032 7.61505671 91699919 CopA Metal Resistance Copper Polaromonas sp. JS666 8.188198469 8.313599108 7.817587859 8.136748815 8.002137078 8.103748666 7.870970562 7.992889007 7.81195047 91203633 ahpC Stress Oxygen stress Candidatus Kuenenia stuttgartiensis superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;genus:Candidatus Kuenenia; 7.613844951 7.176771573 7.472753677 7.2094445 7.312808912 7.485810306 109452549 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.709133181 7.545243928 7.204561448 7.366632052 7.02059611 7.624676334 7.178981946 7.679925293 118075189 endochitinase Carbon cycling Carbon degradation Chitin Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 7.330813765 6.713509829 7.100574586 6.986561546 7.173542211 91801919 AceB Carbon cycling Carbon degradation others Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 7.642668069 7.7284357 7.559583915 7.436084194 7.291923075 257446065 obgE Stress Radiation stress Treponema vincentii ATCC 35580 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema vincentii; 7.437359898 7.174828033 6.952044339 6.960567259 7.615542197 71845559 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 7.955280103 7.662096458 7.325738402 7.564594612 8.199325126 7.62281597 7.803222872 7.82506015 7.462614307 19909637 gyrB other category gyrB Rubrobacter radiotolerans superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter; 8.121319141 8.014798615 8.144718145 7.332361003 8.059279311 7.714873067 8.176306595 8.194202739 7.734028588 115397073 tfdA Organic Remediation Aromatics Chlorinated aromatics Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.18555705 7.51604828 89052983 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 7.88551536 7.561337513 7.847828264 7.364272133 7.498328474 7.838038556 7.608450686 7.666078913 7.445010636 183597089 fnr Stress Oxygen stress Providencia stuartii ATCC 25827 7.081281629 7.046475514 7.052314127 7.34145865 253574648 mannanase Carbon cycling Carbon degradation Hemicellulose Paenibacillus sp. oral taxon 786 str. D14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 7.000717315 6.811728969 6.555707113 7.531678013 7.047145153 6.839668271 7.33075166 13591781 groEL Stress Heat shock Nocardia asteroides superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia; 7.219119284 7.350592604 7.516564558 7.296812376 7.08221105 7.759857259 6.951501774 7.138987732 7.042812246 24375591 pilin virulence pilin Shewanella oneidensis MR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella oneidensis; 7.28473758 7.139050293 8895172 helicase_family_4_DnaB_like Bacteria phage REPLICATION Pseudomonas phage D3 order:Caudovirales;family:Siphoviridae; 7.119335689 7.14970163 6.969835449 7.350618512 209502829 phtA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.513872351 7.546626731 7.330154283 7.221446068 7.384335866 7.782293843 7.610954415 7.519042628 7.461172813 67900760 nitA Organic Remediation Aromatics Other aromatics Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.191718688 7.173772899 7.042459865 6.937818069 6.860572375 7.619089123 7.148967354 7.074350831 7.065464342 152070817 narI Stress Oxygen limitation Beggiatoa sp. PS superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Beggiatoa; 7.464590497 7.382201799 7.313671774 7.007793918 7.414944083 3372191 nifH Nitrogen Nitrogen fixation unidentified bacterium superkingdom:Bacteria; 7.340202323 7.417149462 7.442056072 6.99225383 7.205417924 7.491049517 7.081526472 7.184047057 7.178048798 77958961 ppx Phosphorus Phosphorus utilization Yersinia bercovieri ATCC 43970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 7.370190361 7.18256182 7.211582847 6.857802824 7.494636508 7.116825995 7.061801603 7.329984123 78221348 cytochrome Energy process Energy process Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 7.61985472 7.392530685 7.373315315 7.461068772 7.348390595 7.968756727 7.354889448 7.463176492 258560745 ABC_antibiotic_transporter Antibiotic resistance transporter Corynebacterium genitalium ATCC 33030 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium genitalium; 7.15915968 7.485579627 7.632825167 7.4763897 7.423220125 7.795298846 7.7797946 7.934121124 118170172 CopA Metal Resistance Copper Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 7.914604315 8.069044446 7.848319698 7.251888383 8.062343172 7.740871357 7.682869044 7.863148715 7.971896398 157285668 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.54138967 7.315068971 7.790216916 7.707123583 8.037997368 7.310929293 7.433333953 7.464649247 146304018 4Fe_4S_ferredoxin Bioleaching Electron transport Metallosphaera sedula DSM 5348 7.134928796 7.296548085 7.29991916 7.153590338 7.301630432 7.450857846 119475704 pilin virulence pilin marine gamma proteobacterium HTCC2143 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.623608658 7.544736135 7.871997718 7.643584399 7.827611825 7.981788012 7.919286186 7.985535433 8.184758156 172056869 sigma_70 Stress Sigma factors Exiguobacterium sibiricum 255-15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 7.545122866 7.192176674 7.300179224 89087459 tnrA Stress Nitrogen limitation Bacillus sp. NRRL B-14911 7.939170187 7.68939073 77176863 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. KB1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.299829575 7.366275327 114307341 sigma_70 Stress Sigma factors Nitrosomonas eutropha C91 7.584492919 7.424121885 6.95382248 7.391861805 7.39091202 7.616330773 9967515 ara Carbon cycling Carbon degradation Hemicellulose Thermobacillus xylanilyticus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Thermobacillus; 7.108799083 7.201770028 7.090883672 6.983258924 6.520824723 7.482795087 222147259 oxyR Stress Oxygen stress Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 8.253141319 7.724436701 7.830053605 8.115489327 8.511415654 8.316745727 8.487062087 8.343633003 8.541047691 256008402 pcc Carbon cycling Carbon fixation Acidimicrobium ferrooxidans DSM 10331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Acidimicrobiales;family:Acidimicrobiaceae;genus:Acidimicrobium;species:Acidimicrobium ferrooxidans; 7.554574463 7.160896421 7.374783082 7.301006953 154149387 grpE Stress Heat shock Campylobacter hominis ATCC BAA-381 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter hominis; 6.713639283 6.801562879 7.065130214 7.048793383 219670306 grpE Stress Heat shock Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 7.254789195 7.533464072 7.620403877 6.69473273 7.010920742 7.419402741 7.191807844 7.488718399 253699332 cytochrome Energy process Energy process Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 7.039523024 7.398079774 7.528754138 7.037514017 7.904125146 83589265 aclB Carbon cycling Carbon fixation Moorella thermoacetica ATCC 39073 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Moorella;species:Moorella thermoacetica; 7.503560652 7.380332721 7.806345154 7.682289324 7.863090965 7.738150003 7.466518835 7.968932907 56708985 hao Nitrogen Nitrification Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 8.000576341 7.874721646 7.844508647 7.770241065 7.824139231 7.858782617 7.666110185 7.609343781 145553576 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 7.209262075 7.157185158 7.120473384 7.445820877 85820008 alkK Organic Remediation Others Polaribacter sp. MED152 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Polaribacter; 6.837837506 6.960116342 6.876845417 163841899 pstB Stress Phosphate limitation Renibacterium salmoninarum ATCC 33209 7.413079737 7.459155878 7.416213161 7.805750016 7.835000934 7.546664622 148832047 TerC Metal Resistance Tellurium Erythrobacter sp. SD-21 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 7.359542505 7.46506237 7.894382431 7.227918634 7.563311389 7.653172284 7.151640983 7.202238596 7.3508846 92116236 MFS_antibiotic Antibiotic resistance transporter Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 7.679750802 7.74616314 7.586138126 7.54278334 7.57480702 254506799 ppk Phosphorus Phosphorus utilization Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.463274584 7.091146226 7.135898862 7.218858674 7.387557923 149204374 nifH Nitrogen Nitrogen fixation Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.842105793 7.836457224 7.411947712 7.115575626 7.72963804 7.561386576 7.579118969 7.789465641 7.111299749 163759655 nitA Organic Remediation Aromatics Other aromatics Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 7.611156002 7.455059406 7.376890155 7.351397846 7.004100583 7.988838566 7.368796693 7.349222703 266625377 obgE Stress Radiation stress Clostridium hathewayi DSM 13479 7.567214411 7.718200872 7.70147213 7.260378744 7.548100672 7.763562148 7.632000647 242129960 AceA Carbon cycling Carbon degradation others Dickeya dadantii Ech703 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 7.175550151 6.995762691 7.612790608 7.422200209 7.150435604 7.518463549 284062537 cap virulence capsule Geodermatophilus obscurus DSM 43160 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Geodermatophilus;species:Geodermatophilus obscurus; 7.574314721 7.297784767 7.67022774 7.321941263 7.563227598 7.681794637 7.623979624 7.666224844 7.566983402 86608685 cydB Stress Oxygen limitation Synechococcus sp. JA-2-3B'a(2-13) superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.196126232 7.153926288 110281051 fnr Stress Oxygen stress Cytophaga hutchinsonii ATCC 33406 7.41705612 7.230046936 6.755830749 7.586132413 72117122 gyrB other category gyrB Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.432335374 7.173327322 6.987053468 6.806396071 7.602084876 256672081 hly virulence hemolysin Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.109461735 7.340699281 7.705155155 7.918696962 7.372539349 7.984743578 126720105 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 6.809153069 7.344301206 7.141167511 6.955639442 258561890 pstS Stress Phosphate limitation Corynebacterium genitalium ATCC 33030 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium genitalium; 7.186432074 7.238838189 7.761091802 7.389632466 7.480414944 7.344535841 7.641547438 119026355 fnr Stress Oxygen stress Bifidobacterium adolescentis ATCC 15703 7.449066973 7.442361963 7.181697468 7.11009032 7.657500562 7.181250438 7.068862311 118439230 fnr Stress Oxygen stress Stappia aggregata IAM 12614 7.971661542 7.565034531 7.947174833 7.616525948 7.654888687 7.394892222 7.677599062 7.947834158 229002619 iuc virulence aerobactin Bacillus mycoides Rock3-17 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus mycoides; 7.403697315 7.168246357 56460410 ZntA Metal Resistance Zinc Idiomarina loihiensis L2TR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina loihiensis; 7.574456107 7.138326786 20088980 ppk Phosphorus Phosphorus utilization Methanosarcina acetivorans C2A superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina acetivorans; 7.35852805 7.621307197 7.336881093 7.049976069 7.024494816 7.5615459 7.412674554 7.038605305 7.396112851 119958266 sigma_24 Stress Sigma factors Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 7.627915344 7.517052472 7.902116691 8.158334021 7.879021694 8.069371739 7.661254357 7.626126736 7.4908796 55847381 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7.242607125 6.941884497 7.122155965 6.839746014 7.124409302 83372128 alkB Organic Remediation Other Hydrocarbons Rhodobacter sphaeroides ATCC 17029 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 7.52606532 7.37311226 7.367516292 7.055803051 112804106 CorC Metal Resistance Cobalt Campylobacter curvus 525.92 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter curvus; 7.26034844 7.266163983 7.22395574 6.788377816 7.040928442 7.576925946 6.949797333 7.011674213 7.293224021 219679491 phoB Stress Phosphate limitation gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.620270691 7.466417038 7.953704539 8.185611603 7.610227889 8.244359703 7.565997975 7.456841981 7.609614234 256422662 cap virulence capsule Chitinophaga pinensis DSM 2588 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 7.640087597 7.416475972 7.463968379 7.286951714 7.829832797 261337340 amyA Carbon cycling Carbon degradation Starch Bifidobacterium gallicum DSM 20093 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 7.652806548 7.646225868 7.519543163 7.47570673 7.639928746 7.449104721 7.574534433 7.795002466 219675412 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.689342528 7.591754655 7.708335916 7.408201483 7.8925156 7.767375923 7.775936651 7.786131391 7.796375857 194347870 MFS_antibiotic Antibiotic resistance transporter Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 8.576917406 8.450779417 8.64502431 8.366911579 8.327118611 8.829004511 8.06706538 8.462518705 8.136318071 126236592 bphA Organic Remediation Aromatics Polycyclic aromatics Mycobacterium sp. JLS 7.87802711 7.754620415 7.330304402 7.73507442 7.767763692 7.774590173 7.697059641 7.683896181 7.350773698 115384182 grpE Stress Heat shock Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.536724796 7.700532069 7.132286315 7.498243553 7.679008765 7.283425789 7.745240489 68135583 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.099466115 6.996289368 7.100521806 6.763809295 7.36459839 7.224147983 6.891957453 7.32188003 256423322 fnr Stress Oxygen stress Chitinophaga pinensis DSM 2588 7.831963708 7.861078564 7.246475679 6.939884029 7.58512046 7.464139199 7.402890235 7.137335254 260575394 glnA Stress Nitrogen limitation Rhodobacter sp. SW2 7.178227835 6.754147114 6.906724044 6.822101801 7.031158345 154487452 pulA Carbon cycling Carbon degradation Starch Bifidobacterium adolescentis L2-32 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium adolescentis; 7.662641012 7.636092622 7.107792238 7.555856813 7.623795806 7.790388845 7.364722448 7.546684574 7.455362968 149926454 sigma_24 Stress Sigma factors Limnobacter sp. MED105 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 7.699265063 7.488296028 7.422757355 7.85179927 8.207273962 7.923329203 7.707520995 7.876711194 139002992 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.660214197 7.78192133 7.059316885 7.531470936 7.814395117 7.472035353 62512282 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.755298831 7.48578001 7.47383128 7.376406495 7.591477024 7.698181652 7.825659614 7.231100646 7.470399872 226090966 pstB Stress Phosphate limitation Gemmatimonas aurantiaca T-27 7.686960112 7.945944403 7.248745461 7.397550949 7.777879492 7.82077542 7.428434419 7.81587521 116013294 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.465088268 7.421720438 7.546229274 7.23162349 7.468559782 7.403028163 7.550254973 46913016 pstS Stress Phosphate limitation Photobacterium profundum SS9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 6.880692786 6.962976651 169637640 ChrA Metal Resistance Chromium Candidatus Desulforudis audaxviator MP104C superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Candidatus Desulforudis;species:Candidatus Desulforudis audaxviator; 7.10582238 6.960477261 83636151 endochitinase Carbon cycling Carbon degradation Chitin Hahella chejuensis KCTC 2396 7.611226727 7.289707093 119446822 katE Stress Oxygen stress Alteromonadales bacterium TW-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales; 7.314028378 7.090567384 89512926 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.1720676 7.200623764 7.118346071 6.79564483 7.388828193 194566193 MFS_antibiotic Antibiotic resistance transporter Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 7.776926231 7.490138446 7.281657116 7.360891148 7.345582516 7.544970238 7.575098627 7.493084123 7.459829939 255652755 amoA Nitrogen Nitrification superkingdom:Archaea; 7.113888617 7.050059309 6.824115527 6.59141777 7.3695211 6.997359536 6.952537607 114339492 pstC Stress Phosphate limitation Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 7.382230466 6.894942107 7.157777987 7.037831187 6.847778668 18147165 gyrB other category gyrB Alcanivorax sp. Tak-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 8.134899042 8.051882822 8.427000805 8.01719678 8.171177192 8.112746048 7.973488664 8.365329505 7.863061454 7689130 RNA_dependent__RNA_polymerase Bacteria phage REPLICATION Enterobacteria phage KU1 family:Leviviridae;genus:Levivirus;species:Enterobacteria phage BZ13; 7.397334794 7.428001062 7.481323676 6.700338825 7.417956614 169886464 Al Metal Resistance Aluminum Synechococcus sp. PCC 7002 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.30954837 7.163749355 149750164 pilin virulence pilin Vibrio parahaemolyticus AQ3810 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.659061249 7.268271144 6.854798488 7.415594893 169793524 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.266571438 7.542637203 7.604730709 7.058214799 7.280118986 7.184146309 170778212 fnr Stress Oxygen stress Leptothrix cholodnii SP-6 7.511638855 8.056374301 7.496681804 7.41228841 7.608908159 7.957276899 7.718732412 7.850273484 7.623482656 229918397 obgE Stress Radiation stress Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 7.597698198 7.329345261 7.064899698 7.039930267 7.251769364 7.630279507 7.132012393 6.795931354 7.536564072 261365995 narJ Stress Oxygen limitation Neisseria mucosa ATCC 25996 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria mucosa; 7.717484411 7.584968797 7.48146367 6.869768478 7.334923558 7.685098416 7.336823116 7.305233422 7.134459149 116634761 narG Nitrogen Denitrification uncultured bacterium 7.511689876 7.35448509 7.150445383 7.233130977 7.439866609 7.325604955 7.255206849 40313247 DNA_polymerase_type_I Bacteria phage REPLICATION Streptomyces phage phiC31 order:Caudovirales;family:Siphoviridae;genus:PhiC31-like viruses; 7.857192657 7.891406244 7.857354743 7.905921652 8.069902717 7.839308884 7.899454527 7.733338131 7.481020865 218717106 ABC_antibiotic_transporter Antibiotic resistance transporter Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 7.150003699 7.094132579 39934309 alkK Organic Remediation Others Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.147379657 8.170410856 7.736203025 7.869489996 7.992361309 7.814922877 7.69615556 7.614439049 7.848114319 91693696 nagG Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.076144965 7.082615886 7.130669048 7.08084766 7.353541661 221178148 iro virulence Burkholderia multivorans CGD2M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 7.740531276 7.855100894 7.319355759 7.262287391 7.650422257 8.153307819 7.540690581 7.789778881 7.586997389 269095430 katE Stress Oxygen stress Veillonella parvula DSM 2008 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Veillonella;species:Veillonella parvula; 7.565764264 7.433083047 7.354949574 7.112683497 7.538136605 7.308249635 7.350779883 67522471 ahpC Stress Oxygen stress Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.107895402 7.100377025 7.337233628 6.894751882 37651671 DNA_ligase Bacteria phage REPLICATION Aeromonas phage 44RR2.8t order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.248607563 6.858742832 163811658 Ni_Fe_hydrogenase Energy process Energy process Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.153273238 7.162737038 90420021 rubisco Carbon cycling Carbon fixation Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 7.351939781 7.322095031 7.591839654 7.412768131 6.98831883 7.742363468 16119766 nitA Organic Remediation Aromatics Other aromatics Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.072800281 7.764943462 7.312742807 7.543896442 85705618 mer Metal Resistance Mercury Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.253647568 7.347116451 111019296 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7.456648751 7.55436096 7.562063541 7.245112122 7.052932262 7.435269038 7.290988115 7.412945816 7.449087285 157317864 AceA Carbon cycling Carbon degradation others Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 8.100764528 8.007179556 7.987221792 7.958651634 8.135398714 8.037254013 7.778601771 7.735124991 7.959351738 59711997 endochitinase Carbon cycling Carbon degradation Chitin Vibrio fischeri ES114 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Vibrio fischeri; 7.463099599 7.795663589 7.678398051 7.18280346 7.636348182 7.502311993 7.210895453 7.58666663 148655895 sigma_24 Stress Sigma factors Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 7.469578207 7.414757397 7.073634779 7.179175271 7.718409306 187728216 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 7.411837372 7.463304023 7.541173101 7.294457217 146310815 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 8.100600676 7.792254354 7.81963412 7.923960497 8.430758464 8.132641024 8.049120175 8.219118 154151459 pstB Stress Phosphate limitation Candidatus Methanoregula boonei 6A8 7.744667163 7.27396625 7.703388183 1729430 terminal_quinol_oxidase Bioleaching Electron transport Acidianus ambivalens 7.180131401 6.97017211 6.668603131 7.159743653 37999202 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.154715207 6.985774728 6.478058509 7.274882272 99083077 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 6.949998923 7.017324301 88175734 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 8.078745268 7.83646155 7.636766019 7.643194927 7.720029978 7.689755134 7.479646773 7.571361519 260613552 pstB Stress Phosphate limitation Vibrio furnissii CIP 102972 7.262159814 7.458071825 7.41938506 7.393047549 7.022317166 7.675243524 6.931187131 7.063916798 7.360682983 55978101 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.241930822 7.222755118 7.229139765 6.965687569 7.163207778 7.050290946 7.043396625 83647213 ureC Nitrogen Ammonification Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 7.568283359 7.113493913 7.63397867 6.890277935 7.69684856 7.739002061 7.492368168 7.413798083 7.451445787 124009419 sigma_24 Stress Sigma factors Microscilla marina ATCC 23134 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Microscilla;species:Microscilla marina; 7.034252117 6.825942264 6.835873557 6.755839069 13092857 pcc Carbon cycling Carbon fixation Mycobacterium leprae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.921593327 7.527473383 7.307159128 7.422363011 7.543458644 7.754177099 24984301 ArsC Metal Resistance Arsenic Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.724416227 8.568640828 8.308616787 8.357145538 8.253679893 8.207539043 8.185993092 198247996 fnr Stress Oxygen stress Acidithiobacillus ferrooxidans ATCC 53993 7.360520335 7.487005516 6.903686542 7.333783381 6.904723238 7.339234515 77378505 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.673202728 7.693835266 7.474777667 7.50329777 8.065618219 7.765534748 7.480500546 7.740161135 162282251 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 7.901246722 7.742982312 7.298164052 7.224944079 7.073629156 7.668620631 7.332321307 7.413408948 7.645746909 241216050 iro virulence Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 7.65402884 7.376111221 7.080085293 7.306740193 7.878721663 7.525620812 7.661062622 227289840 nplT Carbon cycling Carbon degradation Starch Bacillus halodurans C-125 7.858263121 7.682134473 7.323542882 7.785291237 7.146680131 8.00688197 7.386139587 7.203174736 7.28455014 88711832 ChrA Metal Resistance Chromium Flavobacteriales bacterium HTCC2170 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales; 6.774439067 7.042979304 46126501 nagG Organic Remediation Aromatics Aromatic carboxylic acid Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 7.322024899 7.129269685 152982901 dehH109 Organic Remediation Chlorinated solvents Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 7.777477887 7.880343799 7.582309152 7.980570159 7.47740951 7.529433869 7.911568694 255321328 glnA Stress Nitrogen limitation Campylobacter showae RM3277 7.173652522 6.94002281 7.087410849 211957108 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 6.840164398 7.568341565 7.011755909 6.675135074 7.515733145 154157638 gyrB other category gyrB Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 7.542363566 7.612349655 7.367144216 6.797131216 7.421517764 7.520135775 7.419739872 7.184679892 68536269 gdh Nitrogen Ammonification Corynebacterium jeikeium K411 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 7.645348614 8.023998508 7.334327655 7.096324922 7.783144722 7.695448202 7.783095232 7.077210129 146277957 pstC Stress Phosphate limitation Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 7.572787269 8.040216757 8.097753059 8.24933047 8.133169529 8.46988072 8.260184276 8.297710904 8.309807643 254437388 glnA Stress Nitrogen limitation Octadecabacter antarcticus 307 7.328548773 7.317687443 6.948750311 7.441516739 7.035819308 7.142000395 148272257 arsB Metal Resistance Arsenic Clavibacter michiganensis subsp. michiganensis NCPPB 382 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 7.228347912 7.312885022 7.651670701 7.673870865 7.298761133 7.958481309 148260102 cytochrome_c Bioleaching Electron transport Acidiphilium cryptum JF-5 7.343917889 7.31486591 154150685 nifH Nitrogen Nitrogen fixation Candidatus Methanoregula boonei 6A8 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;genus:Candidatus Methanoregula;species:Candidatus Methanoregula boonei; 7.326935948 7.409232798 7.135097173 6.80220224 7.225024597 7.684722574 7.175095511 7.212603102 7.302945393 159890815 xylA Carbon cycling Carbon degradation Hemicellulose Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 7.748963777 7.569623535 7.550586739 6.989469832 7.362001434 7.473267142 7.503863664 7.110041118 15072940 gyrB other category gyrB Sinorhizobium meliloti superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium; 7.179825326 6.8245397 7.279436141 6.494329197 7.493724274 6.967461644 6.930290053 38520871 nagG Organic Remediation Aromatics Aromatic carboxylic acid Fusarium oxysporum f. sp. lycopersici superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;genus:Fusarium;species:Fusarium oxysporum; 8.335842887 8.236419527 7.954439658 7.5700859 8.234009126 7.900515122 8.262987332 8.055030101 7.94241864 264680388 iro virulence Comamonas testosteroni CNB-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.215337881 6.776521935 7.45992705 7.173043448 6.932873563 7.650459265 104782519 AceA Carbon cycling Carbon degradation others Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 7.121083414 7.363865402 6.996882271 6.83465427 7.789924318 7.291109959 7.464235795 261253874 arcA Stress Oxygen limitation Vibrio orientalis CIP 102891 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 7.30540737 7.239721034 149123273 pcaG Organic Remediation Aromatics Other aromatics Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 8.264216137 8.157849488 8.006628425 7.87417346 8.172890833 8.043186769 8.153322764 8.232780029 7.859101931 77378631 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.918235201 7.964152342 7.802103783 7.481027603 7.84342341 7.883223225 7.897831237 7.773644435 7.783614789 199599527 gyrB other category gyrB Lactobacillus rhamnosus HN001 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 7.248241636 7.182506882 225194133 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.724440282 7.453655418 7.662020135 7.609580474 7.662143282 7.196040817 7.565436974 150029599 linB Organic Remediation Pesticides related compound Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 7.351877739 7.436381977 7.605171673 7.365307068 7.683104198 7.269571445 7.342182278 7.643319905 206678986 pnbA Organic Remediation Aromatics Nitoaromatics Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.261961707 7.651844743 7.63735999 7.555719817 7.206968352 7.666398381 7.04145982 7.623280159 7.865006297 54027155 ppx Phosphorus Phosphorus utilization Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 7.438095601 7.602127434 7.117891145 7.608627993 7.726251869 7.445523966 7.413355263 7.651512412 112462009 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.28075582 7.271292065 7.332372188 7.281599614 7.411839982 7.214436947 7.367329134 260556989 Tet Antibiotic resistance other Acinetobacter baumannii ATCC 19606 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 7.209281491 7.309726431 7.209762287 7.347441119 6.871827842 227960908 bphF1 Organic Remediation Aromatics Polycyclic aromatics Thermomonospora curvata DSM 43183 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora;species:Thermomonospora curvata; 7.402022275 8.012267828 7.982002463 8.21694868 7.92688997 8.416601201 7.696296394 7.647736712 7.592690925 159044203 cellobiase Carbon cycling Carbon degradation Cellulose Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 8.415927515 8.650451788 8.359159859 7.778255935 8.050092755 8.26711919 8.454182496 21489735 tcpA Organic Remediation Herbicides related compound Ralstonia eutropha superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.94449263 7.605370055 7.507327848 7.045658361 7.712737591 7.870452253 7.492580649 7.68184088 7.429438109 119116048 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.319848598 7.594842634 7.266915025 6.878844918 6.984769427 7.711868608 108763107 type_III_secretion virulence secretion Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 8.006659183 8.1815822 7.869587087 7.995526383 7.925144266 8.034336367 8.10581476 7.704554382 145965193 endochitinase Carbon cycling Carbon degradation Chitin Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 7.220490047 7.245134248 7.204943593 6.924974534 7.41822429 7.235200797 7.114225999 6.963840858 225572152 obgE Stress Radiation stress Blautia hydrogenotrophica DSM 10507 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Blautia;species:Blautia hydrogenotrophica; 7.218708923 7.104157946 7.681586134 7.010959455 7.372683378 119946960 gyrB other category gyrB Psychromonas ingrahamii 37 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas;species:Psychromonas ingrahamii; 8.624034046 8.485677752 8.246983206 8.026320752 8.17151467 8.464503767 8.132080273 8.090146392 237861573 phenol_oxidase Carbon cycling Carbon degradation Lignin Lentinula edodes superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Lentinula; 7.852319234 7.790943442 7.359990191 7.308446027 7.100342209 7.357305019 84664184 phtA Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.675217436 7.664229151 7.506730169 7.130986818 6.974580823 7.7036866 7.095608127 7.514080883 78609422 katE Stress Oxygen stress Lactobacillus sakei subsp. sakei 23K 6.998805362 7.123244036 7.178716235 7.18807791 7.396207341 112379437 Catechol Organic Remediation Aromatics Other aromatics Variovorax sp. C1CL superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax; 8.249280553 8.497291524 8.486100611 7.639235298 7.778143075 7.757259241 7.747962294 8.02897519 88790089 pstB Stress Phosphate limitation Nitrococcus mobilis Nb-231 8.055131731 7.488961767 7.374980716 7.624833065 7.564979129 7.749930463 7.457641775 7.660339457 7.443999776 126592447 pbrT Metal Resistance Lead Bacillus sp. B14905 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.720343085 8.007361718 7.984857656 7.445936622 7.997811917 7.887184775 8.026917152 7.928883863 7.349031983 157324771 oxyR Stress Oxygen stress Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 7.812519776 7.697753113 7.915763452 7.504218311 7.972554496 8.031381564 7.646878378 7.688427493 7.837774729 53758866 CopA Metal Resistance Copper Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 7.463735631 7.393856041 7.528773426 7.743864317 7.652945213 7.801690602 7.437454347 7.413865159 77812179 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Shewanella putrefaciens CN-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella putrefaciens; 7.223790757 7.312756942 7.054988489 6.829437155 6.878568545 7.432457916 7.066208634 7.117181256 7.298047515 148258277 alkK Organic Remediation Others Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.267181292 7.13694049 7.394630887 7.534135829 7.365121374 7.870413964 7.321926666 7.363238108 116061969 dsrB Sulphur sulfite reductase Desulfotomaculum sp. Srb55 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 7.515744535 7.476719417 7.673164941 7.540633661 7.428758278 7.498335751 239934594 sigma_70 Stress Sigma factors uncultured Acidobacteria bacterium superkingdom:Bacteria;phylum:Acidobacteria; 7.770130566 7.957293605 7.720161711 7.946565136 8.28819945 8.483972071 7.954905531 7.796402992 7.995983481 55978141 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.547320119 7.220685849 7.612013434 7.420872075 7.404833574 7.719673987 7.415152385 7.154208129 7.526478278 71735866 type_III_secretion virulence secretion Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 7.169157053 7.236363908 7.273062085 6.912884995 6.840651501 7.398434797 6.897707612 7.289946034 7.40683081 109702528 sigma_32 Stress Sigma factors Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 7.3136927 7.377526698 6.908495048 7.377398831 7.371346968 7.046268187 229610697 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.474883447 7.43211019 170749351 hrcA Stress Heat shock Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 7.843255943 8.054992937 8.332321564 7.939471032 8.274889224 8.265913043 7.960505211 8.202760083 7.749291109 71842815 major_capsid_protein Bacteria phage STRUCTURAL Enterobacteria phage NC28 family:Microviridae;genus:Microvirus;species:Enterobacteria phage WA13 sensu lato; 6.815708114 7.204319244 7.332712541 6.979693623 6.831777091 7.212457195 77462501 fnr Stress Oxygen stress Rhodobacter sphaeroides 2.4.1 7.596027595 7.50822074 7.209151975 7.417888915 7.767155807 7.601842455 7.38210951 7.763072429 85107730 pheA Organic Remediation Aromatics Other aromatics Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 8.265081842 8.050312056 7.664386594 7.712392163 7.295054407 7.958864272 7.805468466 7.764016918 7.604612096 28855837 phoB Stress Phosphate limitation Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 7.135751853 6.996227592 6.990775522 6.697425748 69935845 TehB Metal Resistance Tellurium Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 8.478914554 8.148099401 7.943755962 7.996502715 8.123686299 8.393184041 7.94134973 7.835794734 21106402 silC Metal Resistance Silver Xanthomonas axonopodis pv. citri str. 306 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas axonopodis; 8.211532409 7.9480813 7.889339742 8.329842959 8.301169335 8.122491623 8.23751556 90110545 scaffold Bacteria phage STRUCTURAL Mannheimia phage phiMhaA1-PHL101 order:Caudovirales;family:Myoviridae;genus:P2-like viruses;species:Mannheimia phage phiMHaA1; 7.192870827 7.28305426 7.078449877 7.280060662 7.285095904 6.980962149 6.992906747 170774967 Catechol Organic Remediation Aromatics Other aromatics Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 7.392186951 6.860245147 110648657 pstS Stress Phosphate limitation Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 7.2765568 6.847772335 10172799 alkJ Organic Remediation Other Hydrocarbons Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 7.471697551 7.256777985 194010707 TerD Metal Resistance Tellurium Bacillus pumilus ATCC 7061 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pumilus; 7.582914011 7.437305258 7.157250097 118730375 atzB Organic Remediation Herbicides related compound Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.232643816 8.095899937 8.089803716 7.605246933 8.337562467 7.997811815 8.01629383 7.933039148 8.06221824 92394724 pstB Stress Phosphate limitation Psychrobacter cryohalolentis K5 7.307206113 7.347534869 7.311252855 6.631147177 7.229011235 10640539 Fe_S_cluster_binding_protein Bioleaching Electron transport Thermoplasma acidophilum 7.165256564 7.227954788 6.631873285 7.11920242 7.392243836 7.368164994 7.521033237 158438404 atzA Organic Remediation Herbicides related compound Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 7.516995911 7.804084548 7.507954077 7.429891762 7.447619379 7.801375664 7.543484438 7.60708416 240102661 pstB Stress Phosphate limitation Thermococcus gammatolerans EJ3 7.428660116 7.436958353 7.303819463 7.163690727 6.811365991 7.90419206 6.971444496 7.099972365 120612566 nagG Organic Remediation Aromatics Aromatic carboxylic acid Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 8.154924637 7.890186505 7.198625157 7.611829261 14273636 gyrB other category gyrB Mycobacterium simiae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.360485046 7.405878549 6.888376952 6.858581068 6.869623465 7.370313079 6.969188594 7.025022636 109900198 BADH Organic Remediation Aromatics Other aromatics Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 7.38303432 7.184325429 7.201425895 7.120945233 6.882028924 123441300 ureC Nitrogen Ammonification Yersinia enterocolitica subsp. enterocolitica 8081 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 7.903399904 7.841017419 7.642575412 7.077908308 7.703358307 7.664126256 7.851455367 7.438235783 7.180230507 39576894 sigma_32 Stress Sigma factors Bdellovibrio bacteriovorus HD100 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 7.179516379 7.21562004 7.89304284 7.469755232 6.913577329 7.773215853 156450801 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 8.037459562 8.022981092 7.463321613 7.833700532 7.915153693 7.849877258 78102079 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.878978028 8.069239934 8.423378928 7.383485712 8.180640607 7.865910314 8.28596044 7.791991454 76056973 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.898970196 7.457439724 7.760189372 7.331121537 7.27041121 7.66093125 220711825 phtA Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.998519624 7.685320222 7.559344683 7.377445894 7.282199019 7.751604658 7.373211283 7.373895312 7.505280249 133737684 pbrA Metal Resistance Lead Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 7.464426886 7.458046879 7.026269837 220711347 Arylest Organic Remediation Aromatics Other aromatics Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.08580959 8.490720837 7.927299529 7.672606602 8.346180568 8.224725361 8.125301949 7.663605264 7.900687711 261856530 sigma_70 Stress Sigma factors Halothiobacillus neapolitanus c2 7.820057182 7.398172847 7.684890961 7.89233007 8.074410141 8.114082543 8.015108808 7.826558625 119433770 narI Stress Oxygen limitation Streptoalloteichus hindustanus 7.50473811 7.381116529 7.152428804 7.160667377 7.583964396 7.187583796 7.414039538 7.313356201 92112113 gyrB other category gyrB Azoarcus communis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8.122954275 8.118138714 7.850608933 8.200050851 7.878587842 7.997063739 7.907132769 7.918591577 7.686389517 126664506 CopA Metal Resistance Copper Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 7.529709655 7.373964934 7.068674832 6.770855189 7.129881195 7.891125393 259507884 obgE Stress Radiation stress Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 7.666076663 7.598367295 7.462370627 7.125793821 7.704359153 7.669097418 7.585848305 7.272823833 7.640775233 23978288 gyrB other category gyrB Pseudanabaena sp. PCC 7403 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Pseudanabaena; 7.363053233 7.24561115 7.012881158 6.858148227 110636200 CopA Metal Resistance Copper Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 7.713689563 7.640823116 7.315346923 7.265487801 7.527059301 7.980129045 7.583141338 7.37159243 7.362592006 81252518 ZntA Metal Resistance Zinc Mycobacterium tuberculosis C superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 7.404711744 7.309555154 7.331973057 7.062075871 7.066192592 7.609855001 6.93986076 7.500975766 62003553 narG Nitrogen Denitrification uncultured bacterium 7.219257892 7.201802181 7.251789036 7.269124829 7.352231106 7.821810354 7.406832811 7.382261824 7.485787994 21674638 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Chlorobium tepidum TLS superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 7.217681748 7.140520133 6.911353085 146313253 obgE Stress Radiation stress Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 7.263321975 7.326631338 7.044421358 6.633462508 7.46751002 6.864163361 7.093847354 258560012 sigma_24 Stress Sigma factors Corynebacterium genitalium ATCC 33030 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium genitalium; 7.512354771 7.388198057 7.333831051 7.117752086 7.47213971 7.573030314 7.324384757 7.395486732 167352143 narI Stress Oxygen limitation Shewanella halifaxensis HAW-EB4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella halifaxensis; 7.404167796 7.404798264 7.146403847 113528879 nagK Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 7.951461801 7.800783124 7.650609406 7.608974114 146742380 adpB Organic Remediation Pesticides related compound Rhodococcus sp. 420 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.780986589 7.774349609 7.751935729 7.821588909 8.277648726 8.096643826 8.200337429 7.544526231 149240632 tfdA Organic Remediation Aromatics Chlorinated aromatics Lodderomyces elongisporus NRRL YB-4239 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Lodderomyces;species:Lodderomyces elongisporus; 7.1540587 6.933706242 77976123 tutFDG Organic Remediation Aromatics BTEX and related aromatics Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 7.758639216 7.753679024 7.55667995 7.648775916 7.40211585 7.259933401 7.236024691 7.272982824 212558743 cytochrome Energy process Energy process Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 7.280910522 7.293205617 7.752791718 7.629528188 7.520308935 7.660260205 7.72214191 7.746583046 7.91905403 212559403 ctsR Stress Protein stress Anoxybacillus flavithermus WK1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Anoxybacillus;species:Anoxybacillus flavithermus; 6.853749241 6.859863119 116092343 ZntA Metal Resistance Zinc Oenococcus oeni PSU-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Oenococcus;species:Oenococcus oeni; 7.74126775 7.308962068 7.366236341 6.864969207 7.427740209 219965880 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.676935719 7.852288005 7.432674088 7.522644253 7.056053451 7.237662392 7.204564903 113882455 clpC Stress Protein stress Synechococcus sp. CC9311 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.041624236 7.160067581 7.38045691 7.519734711 7.23556088 7.377399023 7.173457484 190575444 katE Stress Oxygen stress Stenotrophomonas maltophilia K279a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 8.071475021 7.929377934 7.67307544 7.756419076 8.120044369 7.954961012 8.02738392 7.802865326 7.883767282 255264253 AceB Carbon cycling Carbon degradation others Thalassiobium sp. R2A62 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Thalassobium; 7.200939761 7.308004226 7.325033048 6.908120857 6.796156175 7.499615186 6.903778703 6.984688229 114705948 pulA Carbon cycling Carbon degradation Starch Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 7.731030946 7.895622088 7.671284699 7.27700886 7.731643471 7.70856558 7.774054913 110647317 ZntA Metal Resistance Zinc Alcanivorax borkumensis SK2 8.137350713 8.098871992 7.957260599 7.744181279 8.300042486 7.997220404 8.218569059 7.895025686 7.832494727 52787969 ahpF Stress Oxygen stress Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 7.878582819 7.636293195 7.927603913 7.81394445 7.546334201 7.815014259 7.431205567 7.489272156 7.252154269 229750354 sigma_24 Stress Sigma factors Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 7.676926334 8.08855522 8.24165454 7.857087017 8.010924459 8.045903279 7.912137578 8.059626127 7.584533439 91683143 tftH Organic Remediation Aromatics Chlorinated aromatics Rhodopseudomonas palustris BisB5 7.956430088 7.928929308 7.302934431 7.114768332 7.739418114 7.967912638 7.349580356 7.653379838 260773403 oxyR Stress Oxygen stress Vibrio metschnikovii CIP 69.14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio metschnikovii; 8.280396686 7.983546918 8.123575926 7.85603101 8.310874598 8.090466986 8.393698381 88936998 mer Metal Resistance Mercury Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 7.154602569 6.697833901 45479225 Xamo Organic Remediation Other Hydrocarbons Pseudomonas mendocina 6.947839293 7.387661662 7.558296125 7.546436629 6.838518095 7.416913069 7.390164067 7.881479852 197776875 MFS_antibiotic Antibiotic resistance transporter Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 7.331638698 7.481877958 7.180819796 6.841937867 7.266575942 7.730798112 7.115529839 7.046684654 7.479133792 116249170 BADH Organic Remediation Aromatics Other aromatics Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.025522861 8.434135604 8.156297679 8.395338047 9.204944203 8.472887983 8.875155718 8.565031742 8.830363671 146761193 fcbA Organic Remediation Aromatics Chlorinated aromatics Pseudomonas sp. CBS3 superkingdom:Bacteria;phylum:Proteobacteria; 6.830542743 7.140769762 7.264683186 6.935264708 7.127027837 7.506107476 7.312631541 7.160778155 7.260564242 154252893 alkJ Organic Remediation Other Hydrocarbons Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 7.563265222 7.064560202 7.559684885 7.374160074 7.583832396 7.42194842 7.44876217 260850332 mnp Carbon cycling Carbon degradation Lignin Russula sardonia 7.579211744 7.433334591 7.458904196 119225868 Catechol Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 7.842794407 7.943435661 7.920962989 7.744783652 7.516493118 7.863704951 8.143243252 16508080 linB Organic Remediation Pesticides related compound Mycobacterium smegmatis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.788449759 7.757030485 7.655903177 7.877613509 7.616169127 7.754570548 7.851905053 7.423597117 7.666295801 262374581 narJ Stress Oxygen limitation Acinetobacter junii SH205 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter junii; 7.15551247 7.039942759 221563403 cytochrome Energy process Energy process Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 7.818831795 7.76416025 7.408518202 7.431978998 7.545895315 7.203630063 7.278597938 115365172 type_III_secretion virulence secretion Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 7.353097442 7.413490389 7.343087087 6.868285291 7.367763134 7.735279927 7.120925925 7.171485035 7.427993595 88787079 sigma_70 Stress Sigma factors Synechococcus sp. WH 7805 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 6.788295428 7.669229313 118616538 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 7.59640432 7.463182797 7.645970455 7.854640872 7.625823249 7.65993048 7.786197913 71914144 gyrB other category gyrB Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 7.627714712 7.506751074 7.296038989 7.523225153 7.287306941 7.678045616 7.46531309 7.423486023 157962519 cytochrome Energy process Energy process Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 7.56275118 7.290835653 126737065 mer Metal Resistance Mercury Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.339342387 7.276817241 7.722787507 7.413323881 7.336795504 7.879087317 7.188443302 8.087729818 156861718 pulA Carbon cycling Carbon degradation Starch Bacteroides uniformis ATCC 8492 7.019891003 7.368166001 7.56880593 7.820599852 7.145694854 7.726125303 183985331 pcc Carbon cycling Carbon fixation Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 7.786761338 7.503933183 7.748668989 8.023407039 7.286218919 7.922217476 7.593343265 7.699669268 99030623 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 7.352037304 6.728604968 7.079313968 260778188 SMR_antibiotics Antibiotic resistance transporter Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 7.576436442 7.563540435 7.48304208 7.631014457 7.707920818 7.313997593 6.851355326 7.891566747 151302143 APS_AprB Sulphur adenylylsulfate reductase Desulfovibrio profundus superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 7.514499496 7.877610071 7.892071574 8.219870755 7.838851781 8.034944345 8.218395599 8.109153495 7.853392431 116611541 groEL Stress Heat shock Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.418594926 7.615458897 7.741643386 8.004611086 7.627412645 7.170461218 7.430857512 7.459767688 157404325 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.294666659 7.070241968 76057603 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.921618283 7.807422985 8.110475528 7.257486612 7.887308019 7.818895089 7.717264639 7.956118199 7.480876975 206573529 atzB Organic Remediation Herbicides related compound Pseudomonas sp. AD39 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8.031939761 7.623923561 7.250526421 7.462977989 7.386767498 7.772173409 7.196014037 7.204887344 224712624 hao Nitrogen Nitrification uncultured planctomycete 7.546425901 7.461004395 7.464533385 7.518475357 7.430794874 7.679475387 7.496714679 7.134793773 2624376 ZntA Metal Resistance Zinc Proteus mirabilis 7.206858059 6.972593059 7.472270697 7.400904191 6.976081427 8.00351359 7.327235374 7.488095834 7.018209596 222475776 mer Metal Resistance Mercury Halorubrum lacusprofundi ATCC 49239 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 7.554682396 7.739337003 7.759591898 7.23275875 7.615636628 7.688291609 7.542520582 7.609307929 7.714933943 126233993 nahA Organic Remediation Aromatics Polycyclic aromatics Mycobacterium sp. JLS 7.385601309 7.577703179 7.695356231 7.404724352 7.761379533 7.519287105 7.498003038 7.362002585 7.311704259 149174535 sigma_24 Stress Sigma factors Planctomyces maris DSM 8797 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces maris; 7.489276239 7.227516782 26278922 narG Nitrogen Denitrification uncultured bacterium 7.259975943 7.263210982 7.171375722 6.86500603 7.407798452 7.629564854 7.455404943 7.290424237 7.487034176 107103204 ZntA Metal Resistance Zinc Pseudomonas aeruginosa PACS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 7.928205887 7.851252209 7.79226595 7.746338717 7.596623272 7.919232596 7.53796001 7.441379445 7.457536495 33320442 dsrB Sulphur sulfite reductase Archaeoglobus veneficus superkingdom:Archaea;phylum:Euryarchaeota;class:Archaeoglobi;order:Archaeoglobales;family:Archaeoglobaceae;genus:Archaeoglobus; 7.436596751 7.391457404 7.408141117 7.478955688 170733027 fnr Stress Oxygen stress Burkholderia cenocepacia MC0-3 8.22294393 8.172817334 8.140800226 8.399239445 8.29039226 8.412292719 8.649406011 8.05966005 184192106 pstS Stress Phosphate limitation Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.137451225 8.03010598 7.760196499 7.479045485 8.153232043 7.897282412 7.518193996 7.822286395 7.480097863 150423033 exochitinase Carbon cycling Carbon degradation Chitin Vibrio cholerae AM-19226 7.814320793 7.619215291 7.739618873 7.600189909 7.800654298 7.985357154 7.805099405 7.76969083 7.63950178 218763250 alkH Organic Remediation Other Hydrocarbons Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 7.368333764 7.367080888 7.294926912 7.174164913 7.464581629 7.528773506 7.218907145 7.196461566 7.224182951 17431025 ChrA Metal Resistance Chromium Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 8.13648179 8.224126681 7.99507189 8.303582856 7.72385191 8.182186667 8.147847647 8.12011837 78186230 BchY other category chlorophyllide reductase Chlorobium luteolum DSM 273 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon luteolum; 7.376961658 7.020657722 126952478 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 6.924156478 6.991210148 7.111107473 226973534 helicase_family_4 Bacteria phage REPLICATION Shigella phage phiSboM-AG3 order:Caudovirales;family:Myoviridae; 7.116562968 7.109749385 7.140369395 227357480 pap virulence adhesin Proteus mirabilis ATCC 29906 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 7.636838254 7.917627624 8.005499899 7.931904749 8.013824923 8.070695829 8.281782734 8.281060707 8.046249026 118175207 TerC Metal Resistance Tellurium Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 7.269463639 7.216230973 7.214060187 7.042819248 7.565395258 218885581 sigma_32 Stress Sigma factors Desulfovibrio vulgaris str. 'Miyazaki F' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 8.046437171 7.821340759 7.852488663 8.055153878 7.549338184 7.827765207 7.705218056 7.845582399 124515284 glnA Stress Nitrogen limitation Leptospirillum rubarum 7.862943901 7.616947904 7.491932237 7.342544644 7.277984602 7.688014968 7.559617664 7.194934853 7.099571461 212636056 pilin virulence pilin Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 7.191785651 7.725588434 7.970650703 83852457 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Oceanicaulis alexandrii HTCC2633 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis;species:Oceanicaulis alexandrii; 7.573580261 7.483460063 7.196431629 7.066364722 7.464638271 7.042249579 7.341563787 209502400 nagG Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.827233757 7.795480122 7.707316219 7.472182193 7.990950313 7.712312777 7.577248075 7.59504258 7.517885684 254969268 fnr Stress Oxygen stress Acidithiobacillus caldus ATCC 51756 7.454582676 7.967874614 7.912046346 8.099351787 7.8154144 7.782128726 7.691715499 7.991843414 7.715238212 115381166 gyrB other category gyrB Mesoplasma syrphidae superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Entomoplasmatales;family:Entomoplasmataceae;genus:Mesoplasma; 6.823596149 7.112993203 6.955472023 260905163 AceB Carbon cycling Carbon degradation others Brevibacterium linens BL2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium linens; 7.676919614 7.519831172 7.154369683 7.522348854 7.651900961 7.312066565 7.652654037 171060021 TerC Metal Resistance Tellurium Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 7.799896554 7.711044684 7.572357368 7.155138625 7.028771558 7.667705163 7.206187743 7.027976969 163847594 sigma_70 Stress Sigma factors Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 7.612054404 7.74697942 7.639436903 7.303862305 7.217358241 7.122839855 7.551816309 7573249 proO Organic Remediation Aromatics Other aromatics Sphingomonas sp. LB126 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.591578305 8.381750521 8.065634174 8.307303774 8.84795469 8.207098427 8.451269831 8.285848265 8.844215637 146404203 obgE Stress Radiation stress Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.558472223 8.389977376 8.323566803 8.7016802 8.529995353 8.195967045 8.416720956 8.187569259 8.271909266 90023510 endochitinase Carbon cycling Carbon degradation Chitin Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 7.139387243 7.243767161 222055094 phoB Stress Phosphate limitation Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 7.15537771 7.155653807 188028237 TehB Metal Resistance Tellurium Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 8.060077397 8.107903979 8.045964573 8.139423266 8.232561556 146343428 phtA Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.007496956 7.732315488 7.924406046 7.566147912 8.169780403 8.198315234 8.12667229 7.646188333 114330506 hly virulence hemolysin Nitrosomonas eutropha C91 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas eutropha; 7.482930599 7.247765227 7.108533887 6.787227296 7.36023254 7.545476343 7.243274681 7.007332579 7.386430033 118036018 ChrA Metal Resistance Chromium Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.543960164 7.416966283 7.600831348 7.840819973 7.512223004 7.66321853 7.470782962 186682427 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 7.510449442 7.113194171 6.910384223 7.15811416 7.410338541 6.890375696 6.833547436 6.967668584 194597379 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 7.213394478 7.677627289 7.383974556 7.532996175 7.694363919 7.484455102 7.487765718 7.511544488 86131209 nbaC Organic Remediation Aromatics Nitoaromatics Cellulophaga sp. MED134 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Dokdonia;species:Dokdonia donghaensis; 7.17224241 7.237230762 7.735817255 7.81547948 7.691892251 8.002280539 7.427676866 7.645132057 7.780314624 154351065 mdlD Organic Remediation Aromatics Other aromatics Bacillus amyloliquefaciens FZB42 7.451447198 7.177616509 7.421478696 7.354683972 7.211950665 7.73171339 7.663461614 7.640100254 7.328954342 170938102 pcpE Organic Remediation Herbicides related compound Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 7.230174881 7.344733974 7.051622888 7.042064762 270512356 sigma_24 Stress Sigma factors Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 8.028417504 8.106289976 8.120396939 7.417699106 8.41656985 8.148417992 8.159364953 8.236107399 14571783 trzN Organic Remediation Herbicides related compound Streptomyces coelicolor A3(2) 8.046828625 7.209310015 8.018057002 7.864635387 7.550242771 7.70189952 7.58984364 91976614 ZntA Metal Resistance Zinc Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.916826177 7.717958058 7.769132176 7.609074521 7.503455581 7.955113017 7.5275971 7.70878036 7.596439135 88920965 gyrB other category gyrB Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 7.301372512 7.134111964 7.259896088 7.22361485 7.329381809 7.456382887 7.069554472 7.54181653 88703660 AceA Carbon cycling Carbon degradation others gamma proteobacterium KT 71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 7.324455587 7.090946173 158329784 ArsC Metal Resistance Arsenic Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 8.298305043 8.338798052 7.960980362 8.025343569 8.152054071 7.941112173 7.984505024 7.856066094 7.76092062 118048993 vanA Carbon cycling Carbon degradation Others Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8.362970149 8.141380505 8.276258404 8.496761657 8.629454736 8.717023208 9.183024611 9.11937951 9.03231155 88791809 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 7.699327602 7.697365706 7.699094957 7.224259941 7.86091293 7.540224813 7.302269944 7.774014139 7.824931577 153798849 pcc Carbon cycling Carbon fixation Actinomyces odontolyticus ATCC 17982 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces odontolyticus; 8.412118895 8.276848075 8.013689468 8.025198823 8.048637213 7.886935348 7.934323429 7.62081941 282561633 srt virulence surface protein Streptomyces sp. ACTE superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.290626809 8.273018947 8.096502825 7.699002518 8.497966998 8.067036533 8.029943422 8.286658446 8.180976551 38015984 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Aeromonas hydrophila superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas; 7.461355192 7.848141116 8.174116125 8.476128799 7.094877099 7.582989772 7.631121217 7.844420398 91709646 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Methylobacillus flagellatus KT superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 8.020607903 7.452405465 7.151958174 7.624191412 7.84054053 123228310 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.009693128 6.893845189 7.094911984 6.66498333 7.260070036 6.851602509 6.924455616 88790336 grpE Stress Heat shock Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 7.436911081 7.440484887 7.227228212 7.518048651 7.497890321 8.102667124 7.438092467 7.386262123 7.719763577 109454988 nirS Nitrogen Denitrification Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 8.45766865 8.489732229 8.427510727 8.494092503 8.874471043 8.506997356 8.665017607 8.453340893 8.216208888 148658238 pstB Stress Phosphate limitation Roseiflexus sp. RS-1 7.317521426 7.276215288 7.209925034 6.839702508 6.973825893 7.531102705 7.326961267 7.225067256 7.349902107 194289682 exaA Organic Remediation Chlorinated solvents Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 8.48390075 8.468197618 8.556975105 8.265584877 8.702654501 8.152398807 8.694611374 8.722743012 8.085662266 56964337 pcc Carbon cycling Carbon fixation Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 7.174191345 7.179340912 152976828 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Bacillus cereus subsp. cytotoxis NVH 391-98 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cytotoxicus; 7.791919242 7.408026392 146402316 ABC_transporter_III Bioleaching other category Acidiphilium cryptum JF-5 7.442573168 7.483402449 7.581416561 7.777223028 7.527367624 7.777145301 7.897964019 8.049194798 7.653324369 6469462 catB Organic Remediation Aromatics BTEX and related aromatics Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 7.607764732 7.461956535 7.119938413 6.945764384 7.277214654 262374831 ahpF Stress Oxygen stress Acinetobacter junii SH205 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter junii; 6.814445168 7.017879924 39996499 cytochrome Energy process Energy process Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 8.427856189 8.092731837 7.991703091 7.841456868 8.003341046 8.347919423 187984376 ara_fungi Carbon cycling Carbon degradation Hemicellulose Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7.316821589 7.297485334 7.403490205 7.109298269 7.580971674 121714387 katE Stress Oxygen stress Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7.732475688 7.382826465 7.398238115 7.41834696 7.355048957 7.764777053 7.141205262 7.148517755 7.422560399 160917743 narG Nitrogen Denitrification uncultured bacterium 7.558619816 7.619111698 7.979427417 7.53292834 7.777500886 7.893636467 7.913938242 7.922221068 7.720882672 82703429 ahpC Stress Oxygen stress Nitrosospira multiformis ATCC 25196 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira;species:Nitrosospira multiformis; 7.980752711 8.177755455 8.104033389 7.666683999 8.221823126 7.568830429 8.348647919 8.519134187 8.146910297 37900157 rubisco Carbon cycling Carbon fixation Synechococcus sp. OH28 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.468340166 7.305982564 7.286646021 6.787622431 7.416873748 261212171 pstA Stress Phosphate limitation Vibrio sp. RC341 7.771812553 7.403414749 7.461959603 7.135908659 7.159852532 7.874952053 7.244625565 7.286993261 198258575 ureC Nitrogen Ammonification Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 7.390453631 7.443206947 6.98369456 6.870574891 6.91575673 7.627917635 149204531 CopA Metal Resistance Copper Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.278537937 7.087318812 237799370 B_lactamase_C Antibiotic resistance Beta-lactamases Pseudomonas syringae pv. oryzae str. 1_6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 7.463604503 7.552515595 7.69219267 7.535433487 7.923150036 7.793051732 7.946832616 7.895639053 8.211329423 112462513 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.286353785 7.371638907 7.130551733 7.071966939 7.479336576 6.997209588 7.15788209 2765117 merP Metal Resistance Mercury Thiobacillus sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 7.633250386 7.314884901 7.441584447 7.130835133 6.913256432 7.553800633 7.032392315 7.166472402 241894983 pstB Stress Phosphate limitation Weissella paramesenteroides ATCC 33313 7.882389197 7.587037783 7.627600293 284920493 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 7.665904649 7.17028346 7.576903254 7.296763422 8.19559068 7.481870685 7.697508662 7.821162237 7.761441332 197716123 ara Carbon cycling Carbon degradation Hemicellulose Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 7.904916271 7.799556047 7.911891827 7.506796365 7.989660389 7.938740709 7.670582537 7.869094548 119503430 pimF Organic Remediation Aromatics Aromatic carboxylic acid marine gamma proteobacterium HTCC2080 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.926879582 7.683654911 7.351067472 7.701401083 8.023072172 7.41260979 7.328571777 7.181421984 83841079 inv virulence invasion Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 7.409144502 7.508273362 7.422565504 6.990409786 7.679599863 7.426671982 7.482264127 7.57111001 7.333826535 138894023 alkH Organic Remediation Other Hydrocarbons Geobacillus thermodenitrificans NG80-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermodenitrificans; 7.433357675 7.370122704 7.525827987 7.747497587 7.668542889 7.633409825 7.757356066 7.697620913 7.603478375 116333984 obgE Stress Radiation stress Lactobacillus brevis ATCC 367 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus brevis; 7.901831408 7.603608333 7.594879006 7.485433823 7.727960784 7.8955869 7.684086695 7.693879165 7.445529368 109898385 CopA Metal Resistance Copper Pseudoalteromonas atlantica T6c 7.362384848 7.656516327 7.293773282 7.54274915 7.640355709 7.693541663 7.47655832 7.552948266 270157010 pilin virulence pilin Legionella longbeachae D-4968 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella;species:Legionella longbeachae; 7.847816148 7.689928212 7.799951286 7.376960207 7.847261876 7.880123185 7.993569184 7.715885762 77378641 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.802171618 7.361560765 7.288976409 7.439939991 7.597728683 7.790992219 7.392334319 7.590746874 7.678432936 33148420 grpE Stress Heat shock Haemophilus ducreyi 35000HP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus ducreyi; 6.824009567 6.596884326 7.043665759 229874084 ara Carbon cycling Carbon degradation Hemicellulose Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 7.275677619 7.228475342 7.194811588 7.113526768 7.54031764 258638949 sigma_70 Stress Sigma factors Pantoea sp. At-9b 7.677137564 7.722623069 7.731390767 8.524534393 8.090033024 8.340956472 7.512131893 7.804858974 8.224038488 114778492 sigma_70 Stress Sigma factors Mariprofundus ferrooxydans PV-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Zetaproteobacteria;order:Mariprofundales;family:Mariprofundaceae;genus:Mariprofundus;species:Mariprofundus ferrooxydans; 7.21937379 7.65000092 7.986832128 7.868405541 7.345254371 8.006935175 7.658232515 7.577645426 7.828734683 227427763 fnr Stress Oxygen stress Xylanimonas cellulosilytica DSM 15894 8.659664813 8.326505636 7.577805217 8.206976325 8.560190672 8.391726815 8.342310319 8.385908252 8.409394244 116248799 linC Organic Remediation Pesticides related compound Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.537350941 7.537077866 7.397162117 7.241017736 7.816673368 7.703736157 7.687774861 7.404079496 94263148 mer Metal Resistance Mercury delta proteobacterium MLMS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 6.976924899 6.920913867 7.219439504 7.359505702 262219781 pstA Stress Phosphate limitation Grimontia hollisae CIP 101886 7.778713508 7.350439946 7.185351903 7.714381414 7.386682567 7.945424593 7.286388902 7.320364271 7.083991694 209966222 hrcA Stress Heat shock Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 8.149867156 7.941774347 8.027847471 7.597579286 8.120488335 7.931155931 8.137930035 7.685405492 8.023027977 86742448 sigma_24 Stress Sigma factors Frankia sp. CcI3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 7.735481316 8.454805192 8.140071348 7.800891232 8.121361309 7.784623248 8.119387153 7.94851076 556334 mauAB Organic Remediation Herbicides related compound superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylophilus; 7.356931877 6.782958374 7.336571071 7.356583587 7.342427467 118046098 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 7.099256935 7.731459776 86357653 pheA Organic Remediation Aromatics Other aromatics Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.389895517 7.210699948 7.223543077 7.152519061 7.195895014 7.727941064 7.044779298 7.125592378 212529452 nagG Organic Remediation Aromatics Aromatic carboxylic acid Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.359993321 7.267647667 7.325955038 6.72123142 7.472259745 6.87061609 7.303440596 118033927 phtA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.9972111 7.980767614 7.47182383 7.005444859 7.593722364 7.557149334 7.358995123 7.528076533 7.166223605 46370522 BADH Organic Remediation Aromatics Other aromatics Aspergillus nomius superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 7.50222068 7.296439181 7.316824995 7.166483448 7.212218463 7.387832908 7.496887788 7.437443193 144905645 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.85629397 7.384645468 7.463965303 7.279396896 7.59529358 7.628072954 7.735560659 7.346883877 7.352710696 113944587 endochitinase Carbon cycling Carbon degradation Chitin Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 7.561317973 7.732599591 7.612897564 7.047803833 7.667196025 7.463740554 7.367792806 7.563963233 68267943 glnA Stress Nitrogen limitation uncultured cyanobacterium 7.299219653 7.464838186 7.201925811 7.31938959 7.258484465 7.317918573 7.254569928 52207946 phdCI Organic Remediation Aromatics Polycyclic aromatics Sphingomonas sp. CHY-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 7.718354362 7.931771479 6.899507835 7.798752911 7.455169417 7.681096651 7.783061368 262084430 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 7.591687684 7.684745601 7.637781653 7.517607073 7.693699046 7.928644468 7.901414405 7.779544839 119377721 phn Organic Remediation Herbicides related compound Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 7.351015437 7.613293586 7.919561784 7.449893483 7.41620887 8.034028655 7.353074529 7.421841959 7.443714544 77460100 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens Pf0-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.44273859 7.525188625 7.869650672 7.515548678 7.755542035 7.594968635 7.666188363 7.554358287 283562088 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 8.109770913 8.153699348 7.909580835 8.301173752 8.092846391 8.064767859 7.838240036 8.045672956 206685456 sigma_32 Stress Sigma factors Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.65673749 7.406037469 7.476058236 7.373797599 7.797388308 8.277768425 7.963349285 7.676861981 7.687528755 91721365 TerZ Metal Resistance Tellurium Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 7.215958413 7.51222901 7.491893332 7.152957304 7.058658613 7.969833711 7.214892768 7.038283113 7.692884244 119377454 sox Sulphur Sulphur oxidation Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 7.864947299 7.179700623 7.12077076 7.620657409 7.240254629 7.05227561 13422497 linB Organic Remediation Pesticides related compound Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 7.626158882 7.821018864 7.88268283 7.860237908 8.042856017 7.907726698 7.910735776 7.901430881 7.95217509 219116384 Tet Antibiotic resistance other Phaeodactylum tricornutum CCAP 1055/1 superkingdom:Eukaryota;phylum:Bacillariophyta;class:Bacillariophyceae;order:Naviculales;family:Phaeodactylaceae;genus:Phaeodactylum;species:Phaeodactylum tricornutum; 7.325626684 7.536890461 7.732078797 6.998854594 7.337047659 7.745007205 7.281628306 7.385113709 255112576 dsrB Sulphur sulfite reductase Thermoanaerobacterium thermosaccharolyticum DSM 571 7.627729159 7.688997446 7.744467653 7.553459166 7.761273009 7.743338876 7.697373424 7.873690057 7.378394979 13814430 tmoABE Organic Remediation Aromatics BTEX and related aromatics Sulfolobus solfataricus P2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus;species:Sulfolobus solfataricus; 7.48380934 7.348449583 7.20998422 145577814 nitA Organic Remediation Aromatics Other aromatics Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 7.837152651 7.760477558 7.898975853 7.568151521 7.755040787 8.020821373 7.762938822 7.581570754 78185851 NiR Nitrogen Assimilatory N reduction Synechococcus sp. CC9902 7.013569833 7.170928599 6.844227425 6.840779757 7.134242452 151562606 sigma_24 Stress Sigma factors Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 7.826068631 7.630520697 8.140032084 8.545772235 8.305003349 8.570479755 8.366666269 172035798 pstB Stress Phosphate limitation Cyanothece sp. ATCC 51142 7.145534158 6.849661413 39648529 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.719481555 7.793125212 7.603034012 8.040934812 7.559357953 7.736760942 7.531084641 7.455633295 7.338263302 110828116 pcc Carbon cycling Carbon fixation Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 8.718413673 8.569490387 8.625291328 8.032155057 8.707077614 8.39460619 8.582657098 8.657615576 8.361641363 227497914 pcc Carbon cycling Carbon fixation Actinomyces urogenitalis DSM 15434 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces urogenitalis; 8.353626255 8.130623676 7.905316505 8.214844674 7.781703869 8.266225171 8.011471605 7.767265692 147886166 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 6.956410922 6.958363218 6.801015505 7.299256147 6.859723723 7.114511233 47458900 bglP Stress Glucose limitation Mycoplasma mobile 163K superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Mycoplasmatales;family:Mycoplasmataceae;genus:Mycoplasma;species:Mycoplasma mobile; 6.938786562 7.293029523 66048049 nmoA Organic Remediation Aromatics Nitoaromatics Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 7.261586132 7.284746652 7.495132654 6.932502194 7.147677154 7.387890819 7.570276118 6.902336685 226357433 sigma_70 Stress Sigma factors Deinococcus deserti VCD115 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 8.6464905 8.164533781 8.319831795 8.119349768 7.994338991 76801958 pimF Organic Remediation Aromatics Aromatic carboxylic acid Natronomonas pharaonis DSM 2160 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natronomonas;species:Natronomonas pharaonis; 7.947365575 7.597295335 7.398435518 7.381671394 7.233506752 28899727 sigma_32 Stress Sigma factors Vibrio parahaemolyticus RIMD 2210633 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.351807431 7.351199699 7.13012509 7.095652979 7.291009607 110612711 gyrB other category gyrB uncultured bacterium superkingdom:Bacteria; 7.832447671 7.925520415 8.021984179 7.535539532 8.120353962 7.900959097 8.150294067 8.033404075 7.848192858 119766811 glnA Stress Nitrogen limitation Shewanella amazonensis SB2B 8.353948547 7.943272791 7.678008113 8.013790324 7.766455259 8.29856719 7.982945076 7.640287466 7.982435465 89951661 CopA Metal Resistance Copper Saccharophagus degradans 2-40 6.999974811 7.345915057 7.485972106 7.277607956 6.927058056 7.763614554 7.276895915 7.125440241 7.150145576 257388252 SMR_antibiotics Antibiotic resistance transporter Halomicrobium mukohataei DSM 12286 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halomicrobium;species:Halomicrobium mukohataei; 7.669606581 7.399178339 7.304864415 7.022876413 7.402917701 7.658493758 7.476026773 6.964193826 7.598289132 78693765 linC Organic Remediation Pesticides related compound Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.181490387 8.011540852 7.978094771 8.033749672 8.180968158 8.160410455 8.070624688 8.091349564 7.98983039 190576084 sigma_32 Stress Sigma factors Stenotrophomonas maltophilia K279a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 7.706930106 7.68719108 8.133793038 7.902198168 8.374919817 7.595771323 7.919190663 7.642718706 152979188 dmsA Organic Remediation Others Actinobacillus succinogenes 130Z superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus succinogenes; 7.809485354 7.849068974 7.46805717 6.860192378 8.034858878 7.189501576 7.379697589 227352303 ahpF Stress Oxygen stress Leuconostoc mesenteroides subsp. cremoris ATCC 19254 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc mesenteroides; 8.333408696 8.165650714 8.044486682 8.017217613 7.708772646 8.026324066 7.501713577 7.459658715 7.86537389 192811716 ara Carbon cycling Carbon degradation Hemicellulose Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.050958005 6.806438607 7.194606361 126202187 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas stutzeri superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.2940892 7.436004588 7.745603786 7.222165095 6.969542138 7.617974832 118032112 linB Organic Remediation Pesticides related compound Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8.260003554 8.295103202 7.949302114 8.107617704 8.701589599 8.310247367 8.473396085 8.423911705 8.471282994 109896405 linB Organic Remediation Pesticides related compound Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 7.715703394 7.877366166 7.914568035 7.231570975 7.766584445 7.656098256 7.846912251 7.830209803 50982444 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7.455435209 7.210082545 7.592364106 7.233300187 7.71102993 7.502561794 7.552283651 7.578705693 82702644 katE Stress Oxygen stress Nitrosospira multiformis ATCC 25196 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira;species:Nitrosospira multiformis; 7.027059662 6.907168792 6.670358928 7.064032013 139003434 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 6.831203471 7.066563407 7.037606193 6.979395832 146339340 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.435054458 7.387453478 7.170141132 6.932872135 7.138725885 7.26148371 7.203638449 7.220096965 7.289579325 40253057 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.427869445 7.201539821 6.790248236 7.473846009 126718341 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.374830158 7.294003057 7.128657504 7.100213776 7.174813772 7.784497541 7.451884753 7.080126831 7.343270938 16082540 ferredoxin_oxidoreductase Bioleaching Electron transport Thermoplasma acidophilum;Thermoplasma acidophilum DSM 1728 7.929444928 7.648621043 7.712742299 7.450617905 7.369386562 7.404676842 7.452665772 7.334884949 148499658 vanA Carbon cycling Carbon degradation Others Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 7.709110915 7.669618913 7.696022153 7.792004466 7.963045244 8.074857682 7.740984083 7.910030114 90422787 SMR_antibiotics Antibiotic resistance transporter Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.396330247 7.384779761 7.423975693 7.247659953 7.894478176 74038294 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.959234821 7.586642061 7.661862034 7.195819374 7.44589683 7.780321994 7.537547496 7.567089901 212635881 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 7.458633301 7.284116667 7.004217819 7.529473332 7.159072647 7.204531826 7.205196287 66043564 ppx Phosphorus Phosphorus utilization Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 7.396023629 7.106189713 7.268804882 7.080107422 7.226978949 7.708081761 7.38417711 7.114108331 7.138720133 169836603 srt virulence surface protein candidate division TM7 single-cell isolate TM7a superkingdom:Bacteria; 7.368317944 7.250082234 7.496452044 7.266371507 7.061028588 7.576046986 7.591889671 7.357265232 7.212149052 160900504 ahpC Stress Oxygen stress Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.455031086 7.434127952 7.407408894 92112445 pcaG Organic Remediation Aromatics Other aromatics Chromohalobacter salexigens DSM 3043 7.482759112 7.642810553 7.437051422 7.061472046 7.515465469 7.817933217 7.328566022 7.459639493 7.378091147 237858273 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 7.080522461 7.378174633 7.04346881 6.956080168 7.406193938 152974231 CadA Metal Resistance Cadmium Bacillus cereus subsp. cytotoxis NVH 391-98 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cytotoxicus; 7.026972941 7.406777456 7.06782539 6.987870714 7.37881378 7.079817745 7.454358326 34105546 endochitinase Carbon cycling Carbon degradation Chitin Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 7.320658069 7.299245735 7.61552271 7.033197779 7.523683285 7.668817755 7.702735898 7.419616996 7.424375252 227453603 cspB Stress Cold shock Corynebacterium aurimucosum ATCC 700975 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium aurimucosum; 7.477521768 7.417182007 7.001851038 7.465293372 149202281 dehH109 Organic Remediation Chlorinated solvents Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.468323978 8.030289689 7.527696898 7.183982529 7.924855458 7.720793944 7.703478125 7.903406135 7.642255707 74136890 nahA Organic Remediation Aromatics Polycyclic aromatics Polaromonas naphthalenivorans CJ2 7.643158405 7.555870303 7.55520816 7.149729558 7.840364208 7.853182245 7.520482048 7.522538442 7.674184995 74038466 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.1734734 8.160456399 8.167683339 7.602072396 8.197805037 8.110125927 8.049395914 8.163588967 7.852891756 116612694 PobA Organic Remediation Aromatics Aromatic carboxylic acid Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.879145296 8.31073018 8.227937515 7.658754936 8.359780642 7.927626316 8.183987199 8.040106808 8.159092133 145251493 ophC Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8.149856066 7.959413962 7.69635895 7.743096899 7.807003455 7.865978838 7.779906241 7.605437479 239797471 fnr Stress Oxygen stress Desulfovibrio magneticus RS-1 7.959308251 7.951430743 8.098729897 8.32880027 7.909024508 8.00259089 8.235989548 8.102126271 29650461 nifH Nitrogen Nitrogen fixation Klebsiella pneumoniae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella; 7.413175362 7.388316539 7.691185125 7.333476671 7.223990128 7.709463443 9651044 nbzC Organic Remediation Aromatics Nitoaromatics Pseudomonas sp. superkingdom:Bacteria;phylum:Proteobacteria; 7.44086025 7.213661625 7.154231407 6.940609637 7.118124337 7.70778244 7.196005168 7.168197527 7.114150146 85672041 pstC Stress Phosphate limitation Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.741419288 7.779260707 8.066881913 7.566143259 8.096770386 8.100898902 8.231015378 8.028591344 7.96419712 22776654 phn Organic Remediation Herbicides related compound Oceanobacillus iheyensis HTE831 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Oceanobacillus;species:Oceanobacillus iheyensis; 7.303856039 6.736882165 7.284428331 156446887 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.589916821 7.251584529 7.122643151 7.170644014 7.022712795 7.70846165 7.375535021 7.15006892 220906131 B_lactamase_C Antibiotic resistance Beta-lactamases Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.725432074 7.349433395 7.743786434 7.373684257 7.570336024 7.791485482 7.292622542 7.67121582 88706254 glnA Stress Nitrogen limitation Congregibacter litoralis KT71 7.363200954 6.938956874 7.410054633 269790601 sigma_38 Stress Sigma factors Thermobaculum terrenum ATCC BAA-798 6.919444237 6.593370241 7.001028248 167644415 xylC Organic Remediation Aromatics BTEX and related aromatics Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.208170493 8.171904644 7.781488131 8.388044322 8.386506187 8.164433723 8.239906051 8.413134533 7.991358424 89348523 TehB Metal Resistance Tellurium Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 7.888393425 7.798918861 7.359702406 7.603028075 7.576609227 7.463509319 7.709089961 7.430908184 118030378 ureC Nitrogen Ammonification Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.664363345 7.85487212 7.98667506 7.910457821 8.077868844 8.027476361 8.070483153 8.151103729 7.683497666 2808782 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.057627678 8.02000445 8.306355223 7.984787824 8.351258493 8.150139294 8.124562178 7.847043914 254506801 oxyR Stress Oxygen stress Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 6.983648505 7.288471003 7.106401466 6.689629228 7.392683935 6.821531927 7.246135059 169186807 tfdA Organic Remediation Aromatics Chlorinated aromatics Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.65526519 7.297185181 7.383357926 7.667968436 7.334931467 7.767178088 7.442625002 7.497489481 7.447428681 66391847 T4_recomb_endonuclease Bacteria phage REPLICATION Aeromonas phage 31 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.050876351 7.240423021 7.256198354 7.344432016 78486231 ppx Phosphorus Phosphorus utilization Thiomicrospira crunogena XCL-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Thiomicrospira;species:Thiomicrospira crunogena; 7.422829366 7.294222912 7.095931869 94554509 ChrA Metal Resistance Chromium Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 6.893298386 7.034252216 7.233999671 6.791575096 6.703096586 6.945279263 214028934 nagG Organic Remediation Aromatics Aromatic carboxylic acid Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.873659295 7.57261769 7.377568982 7.355630779 7.302002827 7.67031786 7.394277196 7.318085935 7.395519127 238834823 obgE Stress Radiation stress Lactobacillus gasseri 202-4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus gasseri; 7.344425145 7.388163203 7.255735753 7.207693972 22778394 alkH Organic Remediation Other Hydrocarbons Oceanobacillus iheyensis HTE831 7.308125337 7.173960415 6.675279558 7.113800288 7.419439918 7.537652031 88657966 sigma_70 Stress Sigma factors Ehrlichia chaffeensis str. Arkansas superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales;family:Anaplasmataceae;genus:Ehrlichia;species:Ehrlichia chaffeensis; 7.345618986 7.059226103 7.031420956 71038310 TerD Metal Resistance Tellurium Psychrobacter arcticus 273-4 7.362888084 7.154279182 7.564848476 7.116983165 6.992949151 7.592165563 6.864412972 7.023918699 7.546639428 1890335 bphA Organic Remediation Aromatics Polycyclic aromatics Cupriavidus necator superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 7.150262462 7.273810628 7.208635001 7.12651973 7.051486801 7.598193196 7.346465836 7.660727306 212635097 alkK Organic Remediation Others Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 7.135870427 7.065374347 7.435599884 7.427988062 6.83826726 7.51847058 7.058378852 7.142416517 116624796 sigma_24 Stress Sigma factors Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 7.581171861 7.521116907 7.487552566 6.986210065 7.719935516 7.198659939 7.511345477 227191394 ara Carbon cycling Carbon degradation Hemicellulose Lactobacillus brevis subsp. gravesensis ATCC 27305 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus brevis; 6.76877153 6.520040333 91720318 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 7.155275018 7.277749542 7.218368369 7.136045216 7.422550154 7.616563304 7.249389202 7.33747295 7.690852502 222481323 pstB Stress Phosphate limitation Halorubrum lacusprofundi ATCC 49239 7.353722011 7.577108192 7.88056632 7.602964994 7.872377311 7.738472137 7.63876201 7.855598354 194292137 dbdC Organic Remediation Aromatics Heterocyclic aromatics Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 8.104514798 7.991403521 7.806630186 7.906959553 8.288055389 8.28829045 8.298243082 8.023233981 8.282227057 260463652 fnr Stress Oxygen stress Mesorhizobium opportunistum WSM2075 7.093369691 7.196997792 7.448488291 6.838320234 7.188098702 146305481 alkB Organic Remediation Other Hydrocarbons Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 7.902217072 7.659198622 7.46451929 7.679759548 7.644596691 7.599136781 7.559047282 7.506851597 224955831 pstS Stress Phosphate limitation Eubacterium hallii DSM 3353 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium hallii; 8.090558755 8.376823983 8.089150482 8.16207648 7.780778447 7.479153654 7.756850397 7.931064377 212555455 sigma_70 Stress Sigma factors Shewanella piezotolerans WP3 7.187129405 6.979201866 7.398218274 7.42100721 7.180861406 7.116158869 7.055880088 7.101107394 57864855 sigma_70 Stress Sigma factors Cyanothece sp. ATCC 51142 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.191696549 7.390717102 7.077354285 6.821927968 7.542788932 152025179 cda Carbon cycling Carbon degradation Starch Bacillus cereus subsp. cytotoxis NVH 391-98 6.971568056 6.82500169 6.869431224 6.85874436 7.172035491 2649652 glnA Stress Nitrogen limitation Archaeoglobus fulgidus DSM 4304 6.812869964 7.209292769 6.963964632 158954868 gyrB other category gyrB Spiroplasma sp. SHRIMP superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Entomoplasmatales;family:Spiroplasmataceae;genus:Spiroplasma; 7.317355361 7.367497973 7.359567239 7.279520046 7.173022343 7.376430408 256035881 xylA Carbon cycling Carbon degradation Hemicellulose Chitinophaga pinensis DSM 2588 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 7.048970021 7.018329659 7.258733327 7.12128782 7.531632659 116743234 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.313165072 7.561469669 7.845902882 7.553932541 7.419590065 7.889433384 7.362229767 7.432978671 16506216 nasA Nitrogen Assimilatory N reduction uncultured marine bacterium superkingdom:Bacteria; 7.637777565 7.430634491 7.942452651 7.437667319 7.679137405 7.850355777 7.76391143 7.577497367 7.787759934 120434868 grpE Stress Heat shock Gramella forsetii KT0803 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Gramella;species:Gramella forsetii; 7.089147875 7.560676545 7.269106588 119477181 glnA Stress Nitrogen limitation marine gamma proteobacterium HTCC2143 7.247727269 7.649681336 7.45721689 7.129852041 7.245147047 7.73618304 7.612415957 7.098655608 7.333610234 266629077 SMR_antibiotics Antibiotic resistance transporter Caulobacter segnis ATCC 21756 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 8.145071507 7.969009141 7.994872483 7.892349141 7.883584833 8.211938266 119391385 narG Nitrogen Denitrification uncultured bacterium 7.767564704 7.801168891 7.817229067 7.645175357 7.702593373 7.821256575 8.029578724 8.210476998 7.977925049 113906476 dmsA Organic Remediation Others Shewanella baltica OS195 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 7.187547233 7.078804018 7.18519763 6.837008707 6.96419964 95110656 glnA Stress Nitrogen limitation Pseudomonas entomophila L48 7.507595674 7.74338939 7.418251977 7.701765844 7.429248554 7.376676179 7.163220056 7.208107465 78102307 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.437199452 7.34287902 7.373389917 6.929528807 6.729291797 7.720901726 7.037334151 7.291781692 7.341642895 170738508 sox Sulphur Sulphur oxidation Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 7.785186772 8.096660632 7.873255171 7.302420964 7.817050426 7.857714816 7.969174065 7.84643799 7.479522196 84043115 pcaG Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 7.642045248 7.966562173 7.637794892 7.962090384 7.18208867 7.337691636 7.919271594 7.588622869 217977021 pstB Stress Phosphate limitation Methylocella silvestris BL2 7.39029148 7.356568779 7.380655707 7.000691394 7.345035592 7.547330735 7.202485685 7.192343287 7.348200118 73486699 ara Carbon cycling Carbon degradation Hemicellulose Arthrobacter aurescens superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.306202992 7.356083641 7.398704044 6.932527331 7.52811404 7.054271041 7.220178378 114315957 phn Organic Remediation Herbicides related compound Granulibacter bethesdensis CGDNIH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 7.708647081 7.78651483 7.582790159 7.411227674 7.582897972 7.438975203 7.357933261 52003580 Al Metal Resistance Aluminum Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 7.804827972 7.333341282 7.313507889 7.108665835 7.560101261 7.183558962 7.223356431 6.941479388 114543894 mer Metal Resistance Mercury Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.407092304 7.513078945 6.868859197 1574666 xylA Carbon cycling Carbon degradation Hemicellulose Haemophilus influenzae Rd KW20 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus influenzae; 6.900490163 7.022005019 7.01934402 146191548 pstA Stress Phosphate limitation Bradyrhizobium sp. ORS278 7.367392277 6.95429424 7.41718861 7.354198687 7.766831224 7.615475367 7.760245518 7.506214879 85707005 ZntA Metal Resistance Zinc Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.708337302 7.657310326 7.658627753 7.70919625 8.055886138 8.00880815 7.851719661 7.834930498 7.816842928 29348350 Mex Antibiotic resistance transporter Bacteroides thetaiotaomicron VPI-5482 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides thetaiotaomicron; 7.761014376 7.614051457 7.547036144 7.281984228 7.230952132 7.793653503 7.541854083 7.456809854 7.468607678 229465577 pilin virulence pilin Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Candidatus Hamiltonella;species:Candidatus Hamiltonella defensa; 7.252350183 7.249144717 7.349612167 149916481 sox Sulphur Sulphur oxidation Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.07602777 8.058861283 7.669060045 7.572248892 8.156273894 8.126401227 8.207594251 8.263661295 8.318366274 115394402 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7.371925694 7.36227563 7.140935114 7.409084557 7.630655523 7.401974873 7.340805 260851166 sigma_38 Stress Sigma factors Prevotella tannerae ATCC 51259 7.401730029 7.626168984 6.999538664 6.895348347 7.707686459 113882492 sigma_70 Stress Sigma factors Synechococcus sp. CC9311 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.279431703 7.03592813 118434454 pcaG Organic Remediation Aromatics Other aromatics Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 7.430881229 7.148140008 6.791192533 7.17203022 7.244066578 7.111534278 159141138 proV Stress Osmotic stress Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.058060413 8.278990499 8.162756023 7.865339223 8.358414168 8.169433998 8.556540088 8.402237217 272540942 sigma_24 Stress Sigma factors Burkholderia sp. CCGE1002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.938037442 7.921581925 7.770847277 7.627491211 7.568084721 7.607208312 7.519266002 222112088 phn Organic Remediation Herbicides related compound Diaphorobacter sp. TPSY superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax ebreus; 7.741114605 8.315527405 7.987755193 7.59684963 7.930131406 7.569335913 7.98453519 7.636419953 123443264 Arylest Organic Remediation Aromatics Other aromatics Yersinia enterocolitica subsp. enterocolitica 8081 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 7.126945245 7.573916972 6.94431678 6.756031859 7.534162596 7.072341696 6.866334363 148651822 gyrB other category gyrB Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 7.489462281 7.326044739 280958911 sigma_24 Stress Sigma factors Desulfovibrio aespoeensis Aspo-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio aespoeensis; 7.428806349 7.400743611 7.603435989 7.055849635 7.543159525 7.623135202 7.054180394 7.499676284 154159409 nitA Organic Remediation Aromatics Other aromatics Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 7.611744862 7.754315383 7.328902891 7.679070761 7.637757675 111021868 nmoA Organic Remediation Aromatics Nitoaromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.082488495 7.315553099 7.541398794 7.33682212 7.799305516 7.906853725 7.703569517 7.491291701 110646156 alkK Organic Remediation Others Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 7.791326846 7.390522036 7.153301275 7.258860597 6.923148846 7.631293451 7.012085288 2650396 desR Stress Cold shock Archaeoglobus fulgidus DSM 4304 superkingdom:Archaea;phylum:Euryarchaeota;class:Archaeoglobi;order:Archaeoglobales;family:Archaeoglobaceae;genus:Archaeoglobus;species:Archaeoglobus fulgidus; 7.245788027 7.200086501 7.08817013 7.578229508 7.359670175 6.960886362 7.364088614 146407424 cspA Stress Cold shock Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.377271338 7.302517734 7.177206191 7.262125267 7.721794488 7.194976598 7.581547914 229762120 pstA Stress Phosphate limitation Streptosporangium roseum DSM 43021 7.724768269 7.358286516 7.241416588 7.362811978 7.619705046 7.626738737 167592173 clpC Stress Protein stress Heliobacterium modesticaldum Ice1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Heliobacteriaceae;genus:Heliobacterium;species:Heliobacterium modesticaldum; 7.547782007 7.043736045 118703932 vanA Carbon cycling Carbon degradation Others Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.119278561 7.925938486 7.715456015 7.991617557 8.110483716 8.099647877 8.1128587 8.020133044 7.706840191 153804461 cap virulence capsule Campylobacter hominis ATCC BAA-381 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter hominis; 7.355584614 7.107243728 7.1192592 7.096307963 7.542042752 7.472808799 7.249910446 7.707097276 167750483 mannanase Carbon cycling Carbon degradation Hemicellulose Eubacterium siraeum DSM 15702 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium siraeum; 7.345665992 7.178082895 7.241117534 6.765809577 7.332665664 154671 F1F0_ATP_synthase Bioleaching other category Acidithiobacillus ferrooxidans 7.598057516 7.223008585 7.302840817 7.14001869 85859021 phoB Stress Phosphate limitation Syntrophus aciditrophicus SB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Syntrophus;species:Syntrophus aciditrophicus; 7.198664937 7.219384947 260852128 ahpF Stress Oxygen stress Prevotella tannerae ATCC 51259 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella tannerae; 7.205143515 7.260848079 7.30494395 7.37039184 7.893629978 7.071128217 7.13732641 7.642669222 255106933 pcc Carbon cycling Carbon fixation Thalassiobium sp. R2A62 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Thalassobium; 7.787431946 7.937870191 7.691666642 7.968835974 8.087270286 8.113948958 87123751 ppx Phosphorus Phosphorus utilization Synechococcus sp. RS9917 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.231802195 7.232079591 7.181461206 7.2451643 7.73219843 7.485699209 7.32825032 7.397469038 168698828 MFS_antibiotic Antibiotic resistance transporter Gemmata obscuriglobus UQM 2246 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata;species:Gemmata obscuriglobus; 7.947606823 7.661282053 7.92962619 7.746252814 7.865753468 7.968359668 7.714886119 7.409307134 7.945054486 260219042 xylA Carbon cycling Carbon degradation Hemicellulose Cronobacter turicensis z3032 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter turicensis; 7.550055097 7.41231249 7.243490101 7.052456219 6.923752477 7.830695062 7.396779067 7.194767858 7.306688277 133738913 linC Organic Remediation Pesticides related compound Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 7.321948151 7.373191558 7.293126409 7.102133964 7.173147644 7.626872094 7.403590709 7.193238555 7.072148051 115422357 fnr Stress Oxygen stress Bordetella avium 197N 7.339378482 7.209096796 7.213153923 6.987870714 7.601753691 7.205816367 7.219495906 226305899 ppk Phosphorus Phosphorus utilization Rhodococcus erythropolis PR4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 7.407626113 7.405227317 7.16723609 6.851632272 7.022353139 7.389576157 77459091 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens Pf0-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.489441586 7.325738402 7.273037028 7.381622034 218459600 CadA Metal Resistance Cadmium Rhizobium etli Kim 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.822094395 7.578712454 7.611371003 7.540957384 7.980641911 7.846867179 7.836134168 7.606753203 7.875951471 119718325 atzA Organic Remediation Herbicides related compound Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 7.845107576 7.679575117 7.906310979 8.409103993 7.979739168 7.69221039 7.90129082 7.760030372 59893406 nosZ Nitrogen Denitrification uncultured forest soil bacterium superkingdom:Bacteria; 7.768590907 7.679308509 7.605417144 7.466461538 7.753038017 83590946 atzD Organic Remediation Herbicides related compound Moorella thermoacetica ATCC 39073 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Moorella;species:Moorella thermoacetica; 7.490357857 7.213476655 6.822587082 7.072213383 7.651124833 237758562 sigma_70 Stress Sigma factors Corynebacterium kroppenstedtii DSM 44385 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium kroppenstedtii; 8.344586943 8.458202227 8.345831734 8.646291869 8.854008132 8.945626685 8.680296661 8.451878484 148628304 nahA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 7.950873832 7.728848279 7.63983547 7.720556545 7.847830857 8.162543321 7.739463228 7.498659946 7.739324517 83855219 nifH Nitrogen Nitrogen fixation Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 8.350867479 8.050112832 7.702966394 7.805667295 7.783440516 8.074899708 7.855892325 7.641554233 221134498 exaA Organic Remediation Chlorinated solvents Glaciecola sp. HTCC2999 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola; 6.887363366 7.112066645 7.090157447 6.683761887 7.49886962 6.819674552 7.179881303 159038742 linB Organic Remediation Pesticides related compound Salinispora arenicola CNS-205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 8.21790489 8.015424548 7.192685663 7.916071237 7.907464076 7.945362259 213013356 bco Organic Remediation Aromatics Aromatic carboxylic acid Thermotogales bacterium TBF 19.5.1 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Kosmotoga;species:Kosmotoga olearia; 6.997515461 6.834304831 72123277 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.819747718 7.950282641 7.780486053 7.33564543 7.818560491 8.017909935 7.723323266 7.205441038 7.711471148 148570716 sigma_24 Stress Sigma factors Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 7.363394783 7.234508639 7.197919116 7.529657643 7.371444374 7.157775861 70930944 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.857339489 7.912377283 8.001879885 8.099886519 8.341028633 8.233040562 8.634944998 8.338346099 8.12420129 166188 lysin Bacteria phage LYSIS order:Caudovirales;family:Podoviridae;species:Streptococcus phage Cp-1; 7.595747479 7.462322904 7.546704579 6.896352402 7.363240346 7.659101678 7.680962771 7.649343957 7.670941068 224609817 phoB Stress Phosphate limitation Thioalkalivibrio sp. K90mix superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 7.645802975 7.727752596 7.424433679 7.858424622 7.718054409 7.507785397 8.000634541 15080 RNA_dependent__RNA_polymerase Bacteria phage REPLICATION Enterobacteria phage GA family:Leviviridae;genus:Levivirus;species:Enterobacteria phage BZ13; 7.120037824 6.982768573 148656571 ChrA Metal Resistance Chromium Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 7.94236355 7.708310459 7.441731093 7.429445418 7.630170114 7.391651582 7.157619876 7.36193148 49527452 cellobiase Carbon cycling Carbon degradation Cellulose Candida glabrata CBS 138 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Nakaseomyces;species:Candida glabrata; 7.518531278 7.403098037 7.15092269 7.319024551 7.151174591 7.031845207 6.871931638 7.049988078 206677502 AceB Carbon cycling Carbon degradation others Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.389002636 7.393552948 7.24697723 7.12451134 7.087553565 7.741472393 7.546230235 7.250810921 262224246 pilin virulence pilin alpha proteobacterium HIMB114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales; 6.986874935 7.444409619 7.281128274 254469244 fnr Stress Oxygen stress Pseudovibrio sp. JE062 7.337691183 7.483085533 7.54891528 7.359311334 7.837037645 7.958328253 7.878851939 7.819641997 217076254 pstB Stress Phosphate limitation Thermosipho africanus TCF52B 6.925224421 7.021630701 53804283 Arylest Organic Remediation Aromatics Other aromatics Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 6.824588083 7.085702365 7.250833691 6.78490755 7.397281344 150972 bphF1 Organic Remediation Aromatics Polycyclic aromatics 7.129045373 7.208234271 7.316570992 6.736930691 7.421756793 7.325529053 7.454010847 7.458542754 28850865 endochitinase Carbon cycling Carbon degradation Chitin Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 7.613205352 7.595877673 7.613738161 7.240292666 7.323143751 7.428108941 7.469986197 37694449 nifH Nitrogen Nitrogen fixation Chroococcidiopsis thermalis PCC 7203 superkingdom:Bacteria;phylum:Cyanobacteria;order:Pleurocapsales;genus:Chroococcidiopsis;species:Chroococcidiopsis thermalis; 7.710602733 7.532333139 7.322698138 6.8753343 7.065779356 7.604936387 7.450950848 7.149850591 7.476544942 166364578 pstC Stress Phosphate limitation Microcystis aeruginosa NIES-843 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 7.005190708 6.880299431 6.994079142 154247889 ArsC Metal Resistance Arsenic Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 7.447618322 7.344819246 116074244 sigma_70 Stress Sigma factors Synechococcus sp. RS9916 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.552178692 7.373021958 7.410936734 7.052111899 7.203106047 212636038 cytochrome Energy process Energy process Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 7.346918775 7.218317151 6.658098462 7.649550545 283833997 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter youngae; 7.517085468 7.537627723 7.567446624 7.78700583 8.234152624 8.716395545 7.865096427 7.736228618 7.83899433 62003537 narG Nitrogen Denitrification uncultured bacterium 10.4483861 10.24275018 10.13511923 45684 bphF1 Organic Remediation Aromatics Polycyclic aromatics Pseudomonas sp. CF600 7.390948722 7.187454523 7.20658711 7.185235754 7.623838291 152957893 mauAB Organic Remediation Herbicides related compound uncultured bacterium superkingdom:Bacteria; 7.518506491 7.618590276 7.736225518 6.943376024 7.507024525 7.772439682 7.889375848 7.834846848 7.266516606 146407247 sox Sulphur Sulphur oxidation Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.347693121 7.535996588 7.556509914 7.556527355 7.493115106 7.938572263 146300386 dnaK Stress Heat shock Flavobacterium johnsoniae UW101 7.277787923 7.131762352 7.246194239 6.759677908 7.50795805 7.3001799 7.006103049 86169511 dnaK Stress Heat shock Leuconostoc fructosum 8.526871515 8.453766136 8.584792909 7.85764952 8.180255642 8.564471549 7.53121163 283793956 sigma_70 Stress Sigma factors Campylobacter jejuni subsp. jejuni 414 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter jejuni; 7.012005304 7.235702282 88945424 nrfA Nitrogen Dissimilatory N reduction Desulfotomaculum reducens MI-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum reducens; 7.795031074 7.637109859 7.084930001 6.942177257 7.67230316 7.444630339 7.332149756 118665375 endoglucanase Carbon cycling Carbon degradation Cellulose Clostridium cellulolyticum H10 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium cellulolyticum; 7.190216207 6.969172804 7.084896575 6.725629083 6.779749083 7.387527846 780727 nifH Nitrogen Nitrogen fixation unidentified marine eubacterium superkingdom:Bacteria; 8.270359707 8.291742234 8.203109517 7.474070329 8.083919647 7.963676523 7.958544912 8.19481729 7.526130378 262274308 type_III_secretion virulence secretion Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;species:Grimontia hollisae; 7.097629375 6.89706807 218321624 ppx Phosphorus Phosphorus utilization Vibrio splendidus LGP32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 7.593938826 7.370387602 7.254955489 7.236711579 7.087570444 7.35031537 7.138351807 7.109508068 89316125 mer Metal Resistance Mercury Mycobacterium flavescens PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 7.317730245 7.381049024 7.521065942 7.11123055 7.681428985 7.914453184 7.609461177 7.221626417 7.469738391 260219287 iuc virulence aerobactin Cronobacter turicensis z3032 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter turicensis; 7.070835124 7.360956566 7.000954393 6.900099517 7.060474717 7.40991967 15619989 gyrB other category gyrB Rickettsia conorii str. Malish 7 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales;family:Rickettsiaceae;genus:Rickettsia;species:Rickettsia conorii; 7.308523423 7.297341465 7.312516915 7.038644772 7.641300337 7.511552295 7.211585432 7.223482584 91686201 chnB Organic Remediation Other Hydrocarbons Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.569200734 7.122314539 6.996207613 7.652792804 7.023708658 7.27268646 220911488 AceA Carbon cycling Carbon degradation others Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 7.49893382 7.641284608 7.9126395 7.387199557 7.251769364 7.803033942 7.340362147 7.785634341 88643064 dsrA Sulphur sulfite reductase uncultured prokaryote 6.80966437 7.138887567 3157546 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 7.412776062 7.410443497 6.764528607 7.111650977 7.448240056 7.417881618 7.419090007 160917735 narG Nitrogen Denitrification uncultured bacterium 7.234502457 7.269149765 7.680275431 7.587306154 7.258796885 7.834883563 7.315385548 7.572599087 7.585755007 4204384 catechol_B Organic Remediation Aromatics Other aromatics Sphingomonas sp. A8AN3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8.352105046 8.321213321 8.150498501 8.060367679 8.500211467 8.197488238 8.272549409 8.431077771 8.371007523 288561812 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.354225097 7.173842377 157804830 APS_AprB Sulphur adenylylsulfate reductase Thiolamprovum pedioforme 7.156427629 6.632189569 7.497093706 7.32974104 7.724742756 110818270 nmoA Organic Remediation Aromatics Nitoaromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8.267961538 8.177684721 7.921882485 7.831139265 8.098179652 7.845236322 7.980722777 7.853830838 8.175346332 113953737 pstA Stress Phosphate limitation Synechococcus sp. CC9311 7.597379708 7.436280557 6.906078584 7.167105961 163791139 grpE Stress Heat shock Carnobacterium sp. AT7 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Carnobacteriaceae;genus:Carnobacterium; 7.877746003 7.464041993 30180077 Mex Antibiotic resistance transporter Nitrosomonas europaea ATCC 19718 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas europaea; 7.474168808 7.58540099 7.491343676 7.896968476 7.045388768 8.240286687 7.451020049 7.585014903 7.226729784 257797260 amyA Carbon cycling Carbon degradation Starch Desulfohalobium retbaense DSM 5692 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium;species:Desulfohalobium retbaense; 7.757781953 7.729030098 7.583531775 7.618639713 7.611869162 7.761329103 7.547022745 7.492234829 15055576 dsrA Sulphur sulfite reductase Desulfotomaculum ruminis superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 7.459612356 7.461228398 8.049386058 8.089350513 7.833498583 7.767755557 7.42220122 7.329534228 120590261 katE Stress Oxygen stress Acidovorax citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 7.845321468 7.711153076 7.527811547 7.667791081 7.841110072 7.785135592 7.633786841 7.319435867 195970127 obgE Stress Radiation stress Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 7.581784151 7.251611286 6.742699025 6.938772842 7.413287622 6.924238065 7.309508674 221726219 cydB Stress Oxygen limitation Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.598026601 8.151469357 7.954554212 8.053878344 7.954683701 8.130052423 8.365769407 8.318807623 7.978854003 255342113 phoB Stress Phosphate limitation Flavobacteriaceae bacterium 3519-10 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae; 7.659604236 7.397834216 6.991622915 7.146826252 7.249312949 7.14392006 7.236526857 219679966 grpE Stress Heat shock gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.698096863 7.793525484 8.136565793 7.50594273 7.559177095 7.802302774 7.911851468 78515749 nosZ Nitrogen Denitrification Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.380668125 7.350728314 7.852431235 7.921840058 7.677191927 8.123017592 7.528442923 7.724714514 7.905314853 255273604 hrcA Stress Heat shock Hyphomicrobium denitrificans ATCC 51888 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 7.715549986 7.925460953 7.704869495 8.036317981 8.001834565 7.736240209 7.67544872 7.805153824 7.66785062 106893619 ChrA Metal Resistance Chromium Clostridium sp. OhILAs superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus oremlandii; 7.453353853 7.291110986 91775126 hrcA Stress Heat shock Methylobacillus flagellatus KT superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 7.493894453 7.219570782 7.190240976 7.179206229 7.208211784 7.448963656 7.194069762 7.320868637 6.952155519 146304593 glycosyl_transferase_EPS Bioleaching EPS Metallosphaera sedula DSM 5348 7.468937631 7.303896914 7.051876795 6.95736069 7.272299921 47155836 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.512410447 7.299009287 153884242 CadA Metal Resistance Cadmium Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 7.915334727 7.576161943 8.299735352 7.386377319 7.324740138 7.958999543 7.386135884 7.81805084 7.324254193 148974097 TehB Metal Resistance Tellurium Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 7.5247778 7.068189005 6.686072137 7.151901682 7.536421014 6.745297237 7.043899678 117982224 proO Organic Remediation Aromatics Other aromatics Burkholderia phymatum STM815 7.443341886 7.362505387 7.246734373 7.059836698 7.35574769 7.794843007 7.613193023 7.219966691 7.248932088 89952992 pstB Stress Phosphate limitation Saccharophagus degradans 2-40 7.732512355 7.450499021 7.508893928 7.737038784 7.312370789 7.982031457 7.385772445 7.464560008 146311802 catB Organic Remediation Aromatics BTEX and related aromatics Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 7.602293344 7.633627824 7.935152098 7.784824659 116612473 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.569803535 7.228262227 7.266802897 6.894404885 7.205825201 7.576279047 193225804 fnr Stress Oxygen stress Cupriavidus taiwanensis 8.744854934 8.329932081 8.295922585 7.949883198 8.710178307 8.050149765 8.308758901 8.340140728 8.177118141 28377402 srt virulence surface protein Lactobacillus plantarum WCFS1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus plantarum; 7.333300765 7.232577069 7.467357124 6.676611825 7.592558783 7.215812483 7.181215496 227069617 NiR Nitrogen Assimilatory N reduction uncultured archaeon 7.621621209 7.711668817 7.511811389 7.513949154 7.299295803 7.631742128 7.856976597 7.759104065 7.592822622 34419587 terminase_small_subunit Bacteria phage REPLICATION Vibrio phage KVP40 order:Caudovirales;family:Myoviridae;genus:T4-like viruses;species:Vibrio phage nt-1 sensu lato; 7.129904783 7.204173698 164637639 exochitinase Carbon cycling Carbon degradation Chitin Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 7.615972203 6.844205301 7.12196315 7.204857536 7.06024612 7.714816899 7.273769295 6.931583766 7.111798928 71280353 katE Stress Oxygen stress Colwellia psychrerythraea 34H superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Colwelliaceae;genus:Colwellia;species:Colwellia psychrerythraea; 7.65908869 7.717329691 7.571886493 7.646124692 7.996267904 7.815458768 7.706565418 7.750015212 154151018 dsrA Sulphur sulfite reductase Candidatus Methanoregula boonei 6A8 7.437754057 7.144628142 7.889361065 7.344559652 7.38755678 7.666198786 7.855867525 165880003 exoglucanase Carbon cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.368146463 7.20315202 7.355366456 7.460819477 7.047488752 7.538684486 7.304267539 6.991076001 7.164457643 119766460 sigma_70 Stress Sigma factors Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 7.509510594 7.739318641 8.053248493 7.745709948 7.901197807 8.197091234 7.75226909 7.897778748 7.67019086 196192056 phn Organic Remediation Herbicides related compound Synechococcus sp. PCC 7335 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.239580063 6.956887016 119874514 pap virulence adhesin Bartonella henselae superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella; 8.280858611 7.98225443 7.670010026 7.872743155 115587765 iro virulence Pseudomonas aeruginosa UCBPP-PA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 7.816924436 7.935979453 8.086317365 8.055306866 7.898783892 7.887638684 8.166934195 8.089494617 8.086186417 237846130 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.455132132 7.745776296 7.44212281 7.799619729 7.454758015 7.23058991 119817972 SmtA Metal Resistance Miscellaneous Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.534013961 7.933531645 7.52573147 7.715614105 7.897399331 8.059886004 8.179271006 7.767894119 7.841657537 167464413 AceA Carbon cycling Carbon degradation others Paenibacillus larvae subsp. larvae BRL-230010 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus larvae; 7.223154057 7.035465727 6.935802778 6.699593978 7.58652645 68464883 AceB Carbon cycling Carbon degradation others Candida albicans SC5314 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;genus:Candida;species:Candida albicans; 7.283689513 7.157811585 7.047021328 6.913761839 7.626004495 91787836 atzC Organic Remediation Herbicides related compound Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 7.520657763 7.798597714 7.151864294 6.956870782 7.752908508 7.586999112 7.586072025 7.64184798 7.644652945 119460577 sigma_32 Stress Sigma factors marine gamma proteobacterium HTCC2080 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.243546893 7.250240041 7.139593098 37900180 rubisco Carbon cycling Carbon fixation Synechococcus sp. OH2 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.320573468 7.935256021 8.070027442 8.255968584 7.713563314 8.206866528 8.166772163 8.130827345 222437136 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 7.513569749 7.263877575 7.43382212 7.525072974 7.652636608 7.334434809 7.556013485 160362772 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8.858319183 8.793893383 8.739712181 8.856039681 8.75044201 8.73654534 8.924964966 8.884965153 8.905096201 157404605 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.065543436 6.83924999 7.495950662 7.162522461 7.323010603 7.228013076 7.325528411 7.258327885 115388107 tfdA Organic Remediation Aromatics Chlorinated aromatics Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.563854501 7.301003042 7.45450623 7.878616217 8.04583869 7.897118282 7.988107218 7.979312931 196202108 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.865143274 7.635543 7.274453994 7.617978545 7.607883161 7.544175979 7.589993506 7.461510559 145666495 nasA Nitrogen Assimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.199176289 7.169797018 196224986 sigma_24 Stress Sigma factors Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 7.634033472 7.403433455 7.452500849 7.473886348 7.462797369 7.309279967 7.398052055 84693858 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 7.408232085 7.141399218 6.882824782 7.585020731 224519145 grpE Stress Heat shock Bacteroides cellulosilyticus DSM 14838 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 7.195285328 6.721144126 7.303829412 189185761 AceA Carbon cycling Carbon degradation others Methylacidiphilum infernorum V4 superkingdom:Bacteria;phylum:Verrucomicrobia;order:Methylacidiphilales;family:Methylacidiphilaceae;genus:Methylacidiphilum;species:Methylacidiphilum infernorum; 7.111641222 7.239218015 7.515008292 7.090397323 7.44885615 7.068859075 7.043029789 68204088 pcc Carbon cycling Carbon fixation Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 7.201153837 7.069592444 6.949445849 34483053 pstS Stress Phosphate limitation Wolinella succinogenes superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Wolinella; 7.367870917 7.475483596 7.31471865 6.9250565 7.302427032 7.592469288 7.091252649 7.206778556 7.225116012 187477439 ppk Phosphorus Phosphorus utilization Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 7.551117331 7.601813691 7.527529817 7.341321984 7.831786788 7.473272213 7.504380834 7.321012169 90441612 SMR_antibiotics Antibiotic resistance transporter Vibrio angustum S14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium angustum; 6.992034776 6.861641338 7.295372448 7.320603483 6.421801161 7.662557077 7.178645802 7.333345025 170143560 hrcA Stress Heat shock Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 7.431048596 7.357785012 7.512975956 6.906530819 7.322232659 7.542904254 7.364247102 7.424141653 83949518 glnA Stress Nitrogen limitation Roseovarius nubinhibens ISM 7.263865269 7.287548624 7.920807783 7.386110417 7.202381889 195945017 mer Metal Resistance Mercury Burkholderia cenocepacia J2315 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 8.179672651 8.223648594 7.834436894 8.111722483 8.151233093 7.811312097 8.162676932 8.087803756 7.743745604 25145458 CadA Metal Resistance Cadmium Caenorhabditis elegans superkingdom:Eukaryota;kingdom:Metazoa;phylum:Nematoda;class:Chromadorea;order:Rhabditida;family:Rhabditidae;genus:Caenorhabditis; 7.592399123 7.481192113 7.443593979 7.209203016 7.428810955 84689901 B_lactamase_C Antibiotic resistance Beta-lactamases Parvularcula bermudensis HTCC2503 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 7.62641049 7.468417777 7.480487892 7.800522147 84780887 ppx Phosphorus Phosphorus utilization Sodalis glossinidius str. 'morsitans' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Sodalis;species:Sodalis glossinidius; 8.078218467 7.883892611 7.639579541 7.602793735 8.004480409 8.270411504 7.856981176 7.766188494 7.769681237 126172354 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Shewanella baltica OS155 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 7.098075632 6.876966404 7.049641083 6.883740972 6.759275486 7.568498186 7.085773399 6.939623684 7.118360242 226226395 SMR_antibiotics Antibiotic resistance transporter Gemmatimonas aurantiaca T-27 superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 7.178815354 7.058361997 7.507586626 7.285685639 6.919064829 7.772209875 7.055433185 7.207520849 7.351289399 15899208 pcc_Bioleaching Bioleaching Carbon fixation Sulfolobus solfataricus P2 7.120530452 7.057641401 6.941061625 53757577 fnr Stress Oxygen stress Methylococcus capsulatus str. Bath 7.1107905 7.100163103 7.314547968 7.281356683 6.979068499 7.640332097 159899799 CopA Metal Resistance Copper Herpetosiphon aurantiacus ATCC 23779 7.656573096 7.789172891 7.434914113 7.385257511 8.056466961 8.012557993 7.728297025 7.585144899 7.750289048 89900713 CopA Metal Resistance Copper Rhodoferax ferrireducens T118 7.963933536 8.015907307 8.121528982 7.743519835 8.330356604 7.837310598 8.171362012 8.421208685 7.911892129 134051269 nrfA Nitrogen Dissimilatory N reduction Desulfotomaculum reducens MI-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum reducens; 7.534555798 7.428992497 7.521324613 7.0822789 7.489136679 7.784925597 7.745162395 7.445202548 7.597221187 56551608 ppk Phosphorus Phosphorus utilization Zymomonas mobilis subsp. mobilis ZM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Zymomonas;species:Zymomonas mobilis; 7.290105 7.523617472 224477155 hly virulence hemolysin Staphylococcus carnosus subsp. carnosus TM300 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus carnosus; 7.122718806 7.005941064 7.290262202 6.785789839 6.634311376 7.483864655 7.14818079 6.99087124 6.939551063 89890612 gyrB other category gyrB Flavobacteria bacterium BBFL7 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria; 7.324579164 7.056192897 7.003263228 6.625761999 7.410007675 7.114881178 6.919395874 270345931 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 7.307303425 7.201383437 7.119447031 7.084576119 7.128853279 72384802 ppk Phosphorus Phosphorus utilization Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.483154327 7.926512698 7.858087187 7.692794025 8.064418616 7.970776222 7.852122983 7.756559736 118436140 MFS_antibiotic Antibiotic resistance transporter Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 7.332708039 7.25132437 7.421659539 7.1976457 6.909808266 7.734388798 57234487 FTHFS Carbon cycling Acetogenesis Dehalococcoides ethenogenes 195 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides;species:Dehalococcoides ethenogenes; 7.378371923 7.355108787 7.154498689 6.730158577 7.712478783 269956035 cap virulence capsule Xylanimonas cellulosilytica DSM 15894 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Xylanimonas;species:Xylanimonas cellulosilytica; 7.585284772 7.60935548 7.639191856 8.107294221 8.000659542 7.80976483 7.739516001 118754068 nrfA Nitrogen Dissimilatory N reduction Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 7.450490223 7.130025609 73539509 catechol_B Organic Remediation Aromatics Other aromatics Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.958891123 7.9234043 7.470039804 7.573006023 8.038047423 7.790342562 7.76110623 8.00253793 119026141 glnA Stress Nitrogen limitation Bifidobacterium adolescentis ATCC 15703 7.558821681 7.303601674 7.220398528 7.644859967 7.297477918 7.593882533 220932787 xylA Carbon cycling Carbon degradation Hemicellulose Halothermothrix orenii H 168 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Halanaerobiales;family:Halanaerobiaceae;genus:Halothermothrix;species:Halothermothrix orenii; 6.9388146 7.163650416 89081907 ppx Phosphorus Phosphorus utilization Oceanospirillum sp. MED92 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Neptuniibacter; 7.375722636 7.182864027 7.311128323 7.017413949 88811268 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 7.665283832 7.34249508 7.623166574 7.590359044 7.127830951 7.397779501 7.258001355 254788243 glnA Stress Nitrogen limitation Teredinibacter turnerae T7901 7.185699222 7.391744772 7.780682017 7.441291198 7.463010476 7.504662541 46914806 pilin virulence pilin Photobacterium profundum SS9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 7.748982501 7.75535146 7.466569026 7.049811584 7.022863824 7.498182023 7.560461604 7.366942576 149380755 Host_recognition_T4_type Bacteria phage HOST RECOGNITION/STRUCTURAL Enterobacteria phage Phi1 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.321672616 7.027577892 167596212 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.434158761 7.268368026 7.460855817 7.146686468 7.668845843 7.701185154 7.829177631 7.537476205 113526757 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 7.287589814 7.31297936 7.564329994 7.68496633 7.378976409 7.187160444 7.179767035 7.433329225 220728726 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 6.907782661 6.988354658 6.857686268 259417951 oxyR Stress Oxygen stress Silicibacter sp. TrichCH4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.554539479 7.914801448 7.861515441 7.530290879 7.952670951 7.879977582 7.727520519 8.063336148 7.786538765 116623292 sigma_24 Stress Sigma factors Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 7.876647088 7.786215926 7.450332326 7.215665041 7.868902724 7.857308751 7.493267526 7.460340851 7.557391442 68521504 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Shewanella baltica OS155 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 7.235150691 7.323117069 7.016413845 6.795867446 7.301495877 148658692 sigma_70 Stress Sigma factors Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 7.91252924 8.240171683 7.559551372 7.484975043 8.136352457 7.780251222 7.958677196 7.880488268 119775535 cytochrome Energy process Energy process Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 7.849934259 7.932146622 7.816080391 7.576014842 7.415577874 7.563069831 7.655139491 7.355524697 7.616688199 71383846 nasA Nitrogen Assimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.691776666 7.901297578 7.935740645 7.290069888 7.372655909 7.476101028 7.579255573 145611248 phenol_oxidase Carbon cycling Carbon degradation Lignin Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 7.076411036 7.078031715 206738111 tutFDG Organic Remediation Aromatics BTEX and related aromatics Coprothermobacter proteolyticus DSM 5265 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermodesulfobiaceae;genus:Coprothermobacter;species:Coprothermobacter proteolyticus; 7.114869163 7.521130721 7.267000742 7.052432773 7.530462908 7.728888831 7.596351956 7.538075686 7.615094909 151872 fnr Stress Oxygen stress Rhodopseudomonas palustris CGA009 7.568263835 7.848886858 8.133113887 7.975433439 8.266108507 8.254574139 8.210107961 8.423938576 8.2461958 218712318 BpH Organic Remediation Aromatics Aromatic carboxylic acid Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 7.012375979 7.136452238 182677641 ChrA Metal Resistance Chromium Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 7.503924643 7.551491687 7.261743904 7.265361493 7.230806125 7.609994632 7.222044531 7.259325232 257473719 pilin virulence pilin Eggerthella lenta DSM 2243 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Eggerthella;species:Eggerthella lenta; 7.674150149 7.569386047 7.581336915 7.628101094 7.657888301 7.623898768 7.621525864 7.521256054 7.557260083 25027433 ArsC Metal Resistance Arsenic Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 7.53800219 7.592484745 7.598662894 7.574815189 7.463309454 7.371684091 7.321534599 7.362309232 188532137 alkB Organic Remediation Other Hydrocarbons Alcanivorax sp. PA3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 6.828534345 7.146243509 7.257539581 7.374703826 7.7449172 167356504 atzD Organic Remediation Herbicides related compound Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.087434163 7.478909928 7.544419028 7.419525066 7.083308248 7.614161101 7.340748549 7.46079855 7.272859331 196183403 sigma_24 Stress Sigma factors Microcoleus chthonoplastes PCC 7420 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus chthonoplastes; 8.051973044 7.639095382 7.278563657 7.591002246 7.366917306 7.824368063 7.197736172 6.96340482 138896078 grpE Stress Heat shock Geobacillus thermodenitrificans NG80-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermodenitrificans; 7.437539874 7.536891505 7.51086218 6.977278829 7.598440121 7.266763002 7.412704096 7.539729407 221722735 hly virulence hemolysin Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.098959222 7.857879186 7.706537658 8.122846785 8.043198238 8.239588414 8.119447869 7.805234515 88702530 nosZ Nitrogen Denitrification uncultured soil bacterium superkingdom:Bacteria; 7.747529682 7.475900526 7.888857402 7.613146235 7.527250374 7.985127264 7.338063606 7.768496518 7.666819138 225199099 obgE Stress Radiation stress Desulfonatronospira thiodismutans ASO3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfonatronospira;species:Desulfonatronospira thiodismutans; 7.239176941 7.156431462 7.196153067 6.944139693 7.707997839 86285274 glucoamylase Carbon cycling Carbon degradation Starch Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.794047958 7.267423788 7.779208544 7.394901628 7.373680329 219676292 ppx Phosphorus Phosphorus utilization gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.299442552 7.040085112 7.340961271 7.15994658 7.420883438 7.417681287 7.605862349 119451158 tfdA Organic Remediation Aromatics Chlorinated aromatics marine gamma proteobacterium HTCC2143 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.167503386 8.209354645 8.226524078 7.746241112 8.247528675 7.97469048 7.849232449 8.206981608 253510877 SMR_antibiotics Antibiotic resistance transporter Helicobacter canadensis MIT 98-5491 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter canadensis; 7.18641322 7.044252372 6.9533859 7.520497772 6.746173829 7.405953784 260405167 phoB Stress Phosphate limitation Acinetobacter sp. RUH2624 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter genomosp. 13TU; 8.015247063 7.6307333 7.751461843 7.866139602 7.929332937 7.815231161 7.9983082 7.849423386 8.012245065 78514649 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.64313429 7.577523384 7.88794266 7.596651131 7.991753096 66046878 atzA Organic Remediation Herbicides related compound Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 7.599565479 7.646944239 7.470557449 7.405180227 7.506403987 7.855543137 7.847790133 7.518813165 7.556580146 70672933 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.90104379 7.654071344 7.381253109 7.522287743 7.426255959 7.870390608 7.570122589 8.031557712 7.074389517 99030449 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 7.294761568 7.398111157 7.41046009 7.161756895 7.73330559 7.445217756 7.116477125 134143109 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 7.478924064 7.54881817 7.526422773 7.492108893 7.563700831 8.008887294 7.315361781 7.419917055 7.461987634 153867966 napA Nitrogen Dissimilatory N reduction Beggiatoa sp. SS superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Beggiatoa; 8.066624788 8.260420287 7.937586096 7.536758354 8.161277896 7.53649976 7.941142959 7.908241354 7.711199145 89952931 mannanase Carbon cycling Carbon degradation Hemicellulose Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 6.900315101 6.974936221 134266926 xylA Carbon cycling Carbon degradation Hemicellulose Geobacillus thermodenitrificans NG80-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermodenitrificans; 7.486332902 7.327207542 6.887388122 7.599640592 7.167150791 6.951974022 257792322 nrfA Nitrogen Dissimilatory N reduction Eggerthella lenta DSM 2243 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Eggerthella;species:Eggerthella lenta; 7.666525119 7.597044603 7.442145857 7.938671453 7.846624803 7.628243334 7.599197319 88859249 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudoalteromonas tunicata D2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas tunicata; 7.790737969 7.798651444 7.744762429 7.405399869 7.351485901 7.631461231 7.612922282 7.391920814 7.493795118 214045228 alkJ Organic Remediation Other Hydrocarbons Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.297866494 7.367895777 7.786503382 7.341637919 7.66283033 7.217688773 7.772215812 7.557260337 109896810 katE Stress Oxygen stress Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 7.33551959 7.352173186 7.409426639 7.350731217 7.447214897 7.492261943 7.385958689 145964909 MFS_antibiotic Antibiotic resistance transporter Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 6.845237536 6.850047726 7.367836019 151562410 ArsC Metal Resistance Arsenic Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 7.423537502 7.336128055 7.451928242 46371039 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.266448164 8.170329385 7.926397821 7.79613558 8.263734897 8.232777692 7.984082744 7.855609218 161390239 bclA Organic Remediation Aromatics Aromatic carboxylic acid Phaeobacter gallaeciensis BS107 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 7.401478667 7.976880211 7.355345132 7.171782027 7.885303577 7.372185954 7.639276107 7.66185501 15673434 proV Stress Osmotic stress Lactococcus lactis subsp. lactis Il1403 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Lactococcus;species:Lactococcus lactis; 6.817244505 6.87675204 121606838 TerC Metal Resistance Tellurium Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 7.486509159 7.708133292 7.29234087 7.711568195 7.546356117 7.839069001 7.625599642 260778141 pstA Stress Phosphate limitation Vibrio coralliilyticus ATCC BAA-450 7.782059129 7.652374099 7.68687062 7.397739074 7.633428687 8.103796175 7.67268581 7.648166624 7.015905712 157374641 pstA Stress Phosphate limitation Shewanella sediminis HAW-EB3 7.602410884 7.811802194 7.545872537 7.144889722 7.7451791 7.622224056 7.347607998 7.708073157 37197667 AceA Carbon cycling Carbon degradation others Vibrio vulnificus YJ016 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 8.183587643 8.443855919 8.274190478 7.867617375 8.651741401 8.040351459 8.443101909 8.301823594 8.511484311 209901790 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.281442173 7.103258021 7.069332143 6.851139759 7.445303602 221563594 phoA Stress Phosphate limitation Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 7.581162875 7.608738623 7.599407686 7.678074331 7.075326206 7.979620992 7.294874791 7.665651419 7.571886101 269139124 SMR_antibiotics Antibiotic resistance transporter Edwardsiella tarda EIB202 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella tarda; 7.311724353 7.200974414 7.283442847 6.999637538 7.466576893 7.703180873 7.440711008 7.17894446 7.276138812 39574444 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Bdellovibrio bacteriovorus HD100 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 8.69206359 8.964095319 8.674578541 8.288164133 9.051845054 8.655323125 8.675217903 8.670832156 8.660031712 56680894 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 7.4718656 7.490119916 7.51793986 7.26090539 7.574088915 7.577821249 7.440850746 7.5969419 83590441 dsrA Sulphur sulfite reductase Moorella thermoacetica ATCC 39073 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Moorella;species:Moorella thermoacetica; 7.334386812 7.441689858 7.321950229 6.990625946 7.535359358 7.64210531 7.659456213 7.426091581 7.67488083 2330778 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Schizosaccharomyces pombe superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Schizosaccharomycetes;order:Schizosaccharomycetales;family:Schizosaccharomycetaceae;genus:Schizosaccharomyces; 7.173117385 6.887829996 7.128553403 6.814384033 6.89708744 37726831 dsrA Sulphur sulfite reductase uncultured prokaryote 7.613543163 6.985770053 242121933 grpE Stress Heat shock Desulfovibrio salexigens DSM 2638 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio salexigens; 7.578648202 7.642634842 7.653895415 7.314032055 7.775612516 7.833672008 7.942583217 7.323739041 7.660599037 92394288 trzN Organic Remediation Herbicides related compound Psychrobacter cryohalolentis K5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter cryohalolentis; 7.04738442 7.138840357 62423283 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Brevibacterium linens BL2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium linens; 7.575557441 7.408442372 7.45139005 7.744983522 8.008339205 7.454931709 7.389243287 7.775908522 159044804 sigma_70 Stress Sigma factors Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 7.171958856 7.116077631 7.555711408 7.033986108 7.645184008 7.165656008 7.061617742 13816354 Fe_S_cluster_binding_protein Bioleaching Electron transport Sulfolobus solfataricus P2 7.324263676 6.862784224 226183040 CDH Carbon cycling Carbon degradation Cellulose Rhodococcus erythropolis PR4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 7.422498812 7.462036497 7.52889531 7.184462026 7.078681038 8.088196164 7.351982507 7.384205246 7.409889362 260458330 obgE Stress Radiation stress Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 7.90968995 7.666552783 7.840762036 7.580647148 7.121583205 239505937 pstB Stress Phosphate limitation Kosmotoga olearia TBF 19.5.1 8.27636465 8.036599205 7.85208581 8.020276492 226718811 iro virulence Azotobacter vinelandii DJ superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 7.265756692 7.28518702 7.410361505 7.125938715 7.194659296 7.945910981 83310333 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Magnetospirillum magneticum AMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 7.906985309 8.534506531 7.565062167 7.580158592 7.83546273 8.466638191 7.4944245 7.714621621 7.454553221 119445039 arcB Stress Oxygen limitation Alteromonadales bacterium TW-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales; 7.62220862 7.260256151 7.303421732 6.927326164 7.514396542 206592296 narH Stress Oxygen limitation Ralstonia solanacearum IPO1609 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 8.014214047 8.063475643 8.102844026 7.999347227 7.949740985 7.481287943 7.565627813 8.003802229 218438150 ppx Phosphorus Phosphorus utilization Cyanothece sp. PCC 7424 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.078583295 7.183001156 7.11595683 6.748201201 6.542169204 7.521187756 7.008429817 7.358605258 85705569 type_III_secretion virulence secretion Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.81820655 7.64578375 7.546417622 7.222062901 7.855013777 8.243043206 7.628591089 7.377977821 7.738411493 27529599 dehH109 Organic Remediation Chlorinated solvents uncultured bacterium superkingdom:Bacteria; 7.970856052 8.242536215 7.76436794 7.161261742 7.78405203 7.732600569 7.35735489 7.392715481 87135383 mauAB Organic Remediation Herbicides related compound Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 7.92179197 7.967928592 7.741833323 7.582451744 8.392051604 8.104640231 7.954306062 7.790883651 7.920861158 229872849 B_lactamase_C Antibiotic resistance Beta-lactamases Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 8.10259577 7.958267411 8.136688073 7.722850781 7.418878918 7.832265722 8.061268129 66801891 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 8.139276772 8.028229074 8.097287085 7.391300635 7.888388925 7.721423952 7.602807504 7.722370985 21322693 mer Metal Resistance Mercury Sphingomonas sp. Spi7 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 7.552299876 7.199456279 7.475260106 7.525121801 7.064804704 150272138 atzA Organic Remediation Herbicides related compound Bacteroides capillosus ATCC 29799 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides capillosus; 7.889888236 7.916411386 7.645415207 7.341509254 7.715126331 8.00500417 7.661960786 7.062983615 7.652980578 256583339 hrcA Stress Heat shock Cryptobacterium curtum DSM 15641 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Cryptobacterium;species:Cryptobacterium curtum; 7.270461722 7.221407734 7.141429185 7.01313039 6.814754099 7.626728542 7.328002689 7.336052916 7.53131422 256637092 obgE Stress Radiation stress Acetobacter pasteurianus IFO 3283-03 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pasteurianus; 7.426005352 7.123379932 91779008 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8.221502852 8.351301016 8.133264157 8.248525075 8.403262627 8.744442895 8.503901169 8.138714096 8.112892933 78066431 nagG Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.833326458 7.560848828 7.386150405 7.744517718 7.522527755 7.80219029 7.362426427 7.458357202 7.529358852 254448642 cydB Stress Oxygen limitation gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.612134679 7.639113127 7.392451409 7.329527843 7.404367225 7.807785522 7.55303382 7.633784106 11498953 pstC Stress Phosphate limitation Archaeoglobus fulgidus DSM 4304 superkingdom:Archaea;phylum:Euryarchaeota;class:Archaeoglobi;order:Archaeoglobales;family:Archaeoglobaceae;genus:Archaeoglobus;species:Archaeoglobus fulgidus; 7.114524786 6.932573244 75704158 CopA Metal Resistance Copper Anabaena variabilis ATCC 29413 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena variabilis; 7.2011864 7.026713864 167583630 primase Bacteria phage REPLICATION Enterobacteria phage phiEco32 order:Caudovirales;family:Podoviridae;genus:Phieco32-like viruses; 7.237908795 7.179429277 7.094609585 167355771 pilin virulence pilin Shewanella halifaxensis HAW-EB4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella halifaxensis; 7.30043918 6.897270299 126035165 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.401807344 7.30981646 7.145131917 6.921956425 211961179 B_lactamase_A Antibiotic resistance Beta-lactamases Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 7.228827445 7.242031298 1652801 gyrB other category gyrB Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 7.082502977 7.005553496 183222123 NiR Nitrogen Assimilatory N reduction Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' 7.139936879 7.083029616 7.032237306 226833388 ara Carbon cycling Carbon degradation Hemicellulose Actinomyces urogenitalis DSM 15434 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces urogenitalis; 7.585204741 7.363938584 7.186138308 7.035433181 68304928 xylM Organic Remediation Aromatics BTEX and related aromatics uncultured bacterium BAC13K9BAC superkingdom:Bacteria; 7.03717232 6.809556509 7.032906776 118758991 vanA Carbon cycling Carbon degradation Others Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8.674825549 8.596266895 8.227104903 8.431590354 8.801100102 8.511066599 8.272232543 7.912254124 32478358 nosZ Nitrogen Denitrification uncultured soil bacterium superkingdom:Bacteria; 7.348021178 7.457972223 7.018940941 7.382801796 7.16003491 7.660261053 149201106 nhh Organic Remediation Aromatics Nitoaromatics Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.679790934 7.79805832 7.38024467 7.342113559 7.084132533 149808537 hly virulence hemolysin Moritella sp. PE36 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Moritellaceae;genus:Moritella; 7.033433872 7.048247409 7.249039494 6.804397756 7.047064169 7.293274756 147676913 bco Organic Remediation Aromatics Aromatic carboxylic acid Pelotomaculum thermopropionicum SI superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Pelotomaculum;species:Pelotomaculum thermopropionicum; 8.076000151 8.405936973 8.404616761 8.458700506 8.148696131 8.272978157 8.28142685 8.620840317 8.372043638 189352015 4HBH Organic Remediation Aromatics BTEX and related aromatics Burkholderia multivorans ATCC 17616 7.972917024 8.010238779 7.891578552 7.661090395 8.159154965 7.997242993 7.715614085 7.738210774 7.784855942 258512478 ahpF Stress Oxygen stress Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 7.007690221 7.253984579 7.05700635 7.009547895 6.982705516 7.657184742 7.227268953 7.256165396 20092432 CadA Metal Resistance Cadmium Methanosarcina acetivorans C2A superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina acetivorans; 7.518316867 7.434559992 6.946404151 7.684737217 194454443 gyrB other category gyrB Lactobacillus reuteri 100-23 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus reuteri; 7.253027394 7.321086073 6.835435299 7.217802127 7.471921133 6.872070016 7.316399437 83845124 hly virulence hemolysin Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 7.425521721 7.643136007 7.03373457 7.425598461 109455804 narH Stress Oxygen limitation Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 7.758713441 7.358950626 7.30423292 7.432772706 7.786555345 7.415726022 7.314654966 7.657184303 116671582 tfdA Organic Remediation Aromatics Chlorinated aromatics Arthrobacter sp. FB24 7.675778974 7.704691199 7.45742413 7.619628441 7.3663156 7.75618042 7.365838366 7.182754831 7.609473142 139004089 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.260360114 7.240548466 7.30471597 229468591 rubisco Carbon cycling Carbon fixation Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 7.066314851 7.084351463 6.986241002 3282064 rusticyanin Bioleaching Sulphur Acidithiobacillus ferrooxidans 7.829032756 7.491945457 7.261609765 149783075 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.354722231 6.990909881 6.99843404 7.006515553 7.783877381 78512521 nitro Organic Remediation Others Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 6.78467946 7.406971218 218723009 nagG Organic Remediation Aromatics Aromatic carboxylic acid Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 7.645712189 7.603299503 7.295795242 7.292045747 7.579267491 7.398377818 7.375893365 7.549989814 283780105 sigma_24 Stress Sigma factors Pirellula staleyi DSM 6068 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Pirellula;species:Pirellula staleyi; 7.547686869 7.897018733 7.660973148 7.431315841 7.91696397 7.847763838 7.999308584 8.031579412 7.836290015 193216866 grpE Stress Heat shock Mycoplasma arthritidis 158L3-1 superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Mycoplasmatales;family:Mycoplasmataceae;genus:Mycoplasma;species:Mycoplasma arthritidis; 7.334853788 7.375993009 7.327858934 6.933285941 6.99230804 7.4684326 7.164027377 7.285596182 71278204 arcA Stress Oxygen limitation Colwellia psychrerythraea 34H superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Colwelliaceae;genus:Colwellia;species:Colwellia psychrerythraea; 7.186110411 7.118460495 7.201458732 46436469 tftH Organic Remediation Aromatics Chlorinated aromatics Candida albicans SC5314 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;genus:Candida;species:Candida albicans; 7.475980828 7.144509295 166860765 iro virulence Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.789613344 7.760130961 7.513102804 7.67327465 7.682492914 7.816029427 7.855850748 7.445384546 7.438249143 149910017 exochitinase Carbon cycling Carbon degradation Chitin Moritella sp. PE36 7.403698253 7.507565077 7.661290613 7.025569124 7.159168859 7.705700159 7.239049181 7.334776063 7.219765522 111071982 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.927667191 7.690490632 7.478744515 7.356973741 7.690583523 89891891 grpE Stress Heat shock Flavobacteria bacterium BBFL7 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria; 7.436056216 7.263147609 7.110782025 15890574 napA Nitrogen Dissimilatory N reduction Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.204835125 7.976585479 7.790208074 7.811909913 8.231255227 7.72977176 8.103810079 8.166184383 7.673332331 89068306 ppx Phosphorus Phosphorus utilization Oceanicola granulosus HTCC2516 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 7.627729264 7.764418287 7.194343007 7.830949156 8.253938163 7.987557003 8.351905185 8.149779521 197301712 obgE Stress Radiation stress Ruminococcus lactaris ATCC 29176 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus lactaris; 6.987005395 7.183815422 55847353 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 8.06402841 8.148206741 8.067841299 8.136019291 8.826821262 8.126439296 8.59940256 8.399324916 8.425297906 237799998 type_III_secretion virulence secretion Pseudomonas syringae pv. oryzae str. 1_6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 8.19467037 8.561650066 8.351476559 7.606796776 8.375655056 8.071322282 8.278184947 8.07803665 8.274528205 57340945 hly virulence hemolysin Listonella anguillarum superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Listonella; 7.042529432 7.037025597 6.973228414 187483774 cellobiase Carbon cycling Carbon degradation Cellulose Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 7.975025184 7.945007513 7.85946822 7.306581112 7.839903734 8.113253475 7.73932837 7.387984433 7.711209588 148260264 ferredoxin_oxidoreductase Bioleaching Electron transport Acidiphilium cryptum JF-5 7.878978028 8.268970971 8.377384542 8.224305728 8.421516544 8.262415669 8.291260361 7.91213198 73534211 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.532770574 7.234017396 7.338864271 7.622288302 7.316282189 7.290671301 7.61669226 3157570 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 8.104007207 7.98212053 8.268436311 7.734252813 8.401751512 7.602039691 7.882364618 8.185924911 8.002411066 118690036 nicdehydr Organic Remediation Aromatics Heterocyclic aromatics Metallosphaera sedula DSM 5348 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Metallosphaera;species:Metallosphaera sedula; 8.464779996 7.973845987 8.308355673 7.754194233 8.003157446 7.812835579 8.041493545 8.102677331 154484558 sigma_70 Stress Sigma factors Eubacterium ventriosum ATCC 27560 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium ventriosum; 7.194794418 7.134495684 7.07936558 7.15151963 6.949201975 7.515955933 42558783 ZntA Metal Resistance Zinc Arthrobacter aurescens superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.48034784 7.240385535 7.291773128 6.871605361 7.034815185 7.547827722 6.724158849 6.801883673 114564708 cytochrome Energy process Energy process Shewanella frigidimarina NCIMB 400 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella frigidimarina; 7.662769096 7.384758325 7.251990782 7.37657112 8.133516231 7.319751044 7.200222506 7.55266102 228269950 phoB Stress Phosphate limitation Staphylococcus hominis SK119 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus hominis; 6.546833147 7.36046113 99079224 nirK Nitrogen Denitrification Ensifer adhaerens superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Ensifer; 7.529328918 7.510452342 7.506806498 7.434296629 7.57381124 7.630859771 7.575929608 7.65468286 7.941248884 149819232 pcc Carbon cycling Carbon fixation Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 7.909608516 7.844444282 7.983555611 8.455994857 7.612933936 8.574753296 7.837945335 7.633267177 7.909170007 37197477 linC Organic Remediation Pesticides related compound Vibrio vulnificus YJ016 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 7.434355439 7.569243726 7.735994509 7.268923499 7.585206525 7.693856552 7.33675594 7.72881354 116183260 TerC Metal Resistance Tellurium Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.996046959 8.044581415 8.212183674 8.133501488 8.031090046 7.87616822 7.88219587 7.748163912 212713495 ara Carbon cycling Carbon degradation Hemicellulose Bifidobacterium pseudocatenulatum DSM 20438 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium pseudocatenulatum; 7.008040221 6.996202039 7.373687447 6.733819049 7.567616696 209495322 sigma_24 Stress Sigma factors Arthrospira maxima CS-328 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira maxima; 8.666874479 8.669912376 8.425048818 8.407175587 8.669757775 13424405 xylanase Carbon cycling Carbon degradation Hemicellulose Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 7.648626197 7.889655706 7.688462382 7.147770877 7.66836944 7.923993531 7.636756646 7.628159111 154508846 TerC Metal Resistance Tellurium Actinomyces odontolyticus ATCC 17982 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces odontolyticus; 7.675504392 7.2914255 7.411119255 7.416879851 7.44746417 7.681928533 7.607297125 7.240605607 7.330522 120403486 clpC Stress Protein stress Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 7.836449257 7.72526365 7.349673925 7.555918202 7.431722148 7.817962884 7.511011482 7.505376669 7.451328779 154299653 ara_fungi Carbon cycling Carbon degradation Hemicellulose Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 7.212755332 6.905515416 37726853 dsrB Sulphur sulfite reductase uncultured prokaryote 8.141240697 8.409853612 8.335464536 8.120349276 8.450469326 8.391307281 8.311587282 8.435948271 8.250474812 160917623 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.374299024 7.340977236 7.312630433 6.895364712 7.561077291 145223224 obgE Stress Radiation stress Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 7.107629419 7.273728236 7.349861139 6.808764313 6.934618728 7.337600115 6.989035223 7.068541276 66474611 gyrB other category gyrB Aeromonas veronii bv. Sobria superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas veronii; 8.016122738 8.06184426 8.202100833 7.253308435 8.070316526 8.058177377 7.69949705 7.690220038 8.179441348 113898080 CopA Metal Resistance Copper Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 7.501564937 7.39602396 7.36709496 7.351716495 7.708790753 7.95222341 7.632448564 7.241896939 7.565615011 237802223 ahpC Stress Oxygen stress Pseudomonas syringae pv. oryzae str. 1_6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 7.098074125 6.726973681 7.211713183 6.991705986 7.671606522 7.056717223 7.042745498 73540039 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.360446304 7.180119129 7.366418522 7.041062264 7.263387087 66801827 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 7.763590468 7.557649396 7.605383107 7.252445128 7.837079045 7.87427717 7.367848442 7.442142628 7.425125096 133738169 fnr Stress Oxygen stress Herminiimonas arsenicoxydans 6.643745688 7.102028605 7.034860656 6.826610728 7.620358018 6.764304218 7.374570683 85836689 nasA Nitrogen Assimilatory N reduction Vibrio sp. MED222 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.263667499 7.202937407 7.041543144 7.433445292 118075140 CopA Metal Resistance Copper Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 7.052490989 6.82833439 6.713671866 7.397279156 116741561 fnr Stress Oxygen stress Listeria welshimeri serovar 6b str. SLCC5334 6.995663521 6.79523256 7.198791881 7.022643017 7.399815876 6.991700807 6.908459538 94501639 linB Organic Remediation Pesticides related compound Oceanobacter sp. RED65 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Bermanella; 7.327707685 7.269133498 7.82152802 7.551131714 7.239679666 7.303554018 7.155737476 7.145522437 227069695 nirA Nitrogen Assimilatory N reduction uncultured archaeon 7.665190961 7.841154571 7.851831188 8.068185732 8.050226617 8.061616115 8.028638498 8.141670724 260632897 cydB Stress Oxygen limitation Pasteurella dagmatis ATCC 43325 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Pasteurella;species:Pasteurella dagmatis; 7.685786575 7.299079824 7.044540553 7.75637571 7.013728105 6.930735975 7.176266753 125863012 pstB Stress Phosphate limitation Methanoculleus marisnigri JR1 7.511845491 7.217395514 7.177293192 6.863680908 7.201040937 169823634 srt virulence surface protein Finegoldia magna ATCC 29328 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Finegoldia;species:Finegoldia magna; 7.219471049 7.006023747 7.388421583 121535090 phoB Stress Phosphate limitation Thermosinus carboxydivorans Nor1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Thermosinus;species:Thermosinus carboxydivorans; 7.466435394 7.328270266 7.321250157 6.748995394 7.603846199 7.143867343 7.376867719 169156021 pulA Carbon cycling Carbon degradation Starch Clavibacter michiganensis subsp. sepedonicus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 8.075295647 8.360777981 8.232006407 7.774216644 8.396409092 8.077424429 8.173977504 8.666036063 257149503 ABC_antibiotic_transporter Antibiotic resistance transporter Lactobacillus rhamnosus GG superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 7.46390565 7.72636009 8.101000422 7.916782648 8.150281028 8.064292975 7.957678032 8.102249201 7.804402717 146402084 NADH_ubiquinone_oxidoreductase Bioleaching Electron transport Acidiphilium cryptum JF-5 7.373228991 7.556309379 7.494278462 7.411813928 7.712084476 7.9016344 7.816558957 7.87005827 7.715872907 218719560 MFS_antibiotic Antibiotic resistance transporter Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 6.947578363 7.049948676 7.248834807 119899265 exaA Organic Remediation Chlorinated solvents Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 7.48846215 7.174983078 7.565815925 7.435993779 7.918819837 7.33005894 7.094907091 7.165701875 46307961 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.701164363 7.847826729 8.102912781 8.034224052 8.19341602 8.36725433 8.532106842 8.327543238 83311249 linC Organic Remediation Pesticides related compound Magnetospirillum magneticum AMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 7.971341079 7.777409694 7.331020073 7.75537884 7.497062715 7.718011458 7.552402483 7.638328034 7.75914164 255692046 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Bacteroides finegoldii DSM 17565 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides finegoldii; 6.723275787 6.955548009 6.984251126 6.843872928 6.926770089 134094420 sox Sulphur Sulphur oxidation Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 7.617908874 7.533285008 7.384183271 7.501588743 7.113741206 7.583400338 7.288890577 7.229327522 7.300657024 121711954 BpH Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7.933256535 7.57321623 7.265005756 7.137050984 7.251975256 7.247346699 6.994938119 71556148 iro virulence Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 7.289867931 7.13438028 6.851147535 6.840332187 7.64063304 7.009453904 7.059050881 120591796 SMR_antibiotics Antibiotic resistance transporter Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 8.193666291 8.074514983 7.88389004 7.898709876 8.198468841 8.02767432 8.05684336 7.893748011 7.913310184 126014646 pstA Stress Phosphate limitation Staphylothermus marinus F1 7.138359052 7.003065097 7.054113962 83835803 PobA Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius nubinhibens ISM 8.33968187 7.968370344 7.889546112 8.337313947 8.273271869 8.374986795 8.344064382 8.175386395 238710165 SMR_antibiotics Antibiotic resistance transporter Yersinia rohdei ATCC 43380 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia rohdei; 7.05910383 7.011392471 6.995735878 6.881796523 7.209441717 7.606476152 45502044 gyrB other category gyrB Microbulbifer cystodytense 7.20741054 7.20622996 7.182613066 6.875856535 7.018789103 7.524035242 7.089039739 7.309927906 56478449 bclA Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 8.169339548 8.300916212 8.417003345 7.976975336 7.919049812 7.816683769 8.181143756 8.084118922 8347012 katE Stress Oxygen stress Proteus mirabilis 6.79315123 7.09318476 6.937949175 281298642 sigma_24 Stress Sigma factors Prevotella buccalis ATCC 35310 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccalis; 7.341797426 6.679903471 7.368669943 258585503 pstB Stress Phosphate limitation Vibrio mimicus VM573 7.264749733 7.793827413 7.534855715 7.579845061 7.537884535 7.893229105 7.177327292 7.28841881 7.137683999 190696534 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.301994068 7.367705707 7.619792021 7.020491176 7.400855233 223983074 groEL Stress Heat shock Holdemania filiformis DSM 12042 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichi;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Holdemania;species:Holdemania filiformis; 7.22791994 7.22244037 7.314926657 6.8962062 6.980172212 7.384790354 7.049629544 7.200670877 7.334098188 241891396 sigma_24 Stress Sigma factors Sphingobacterium spiritivorum ATCC 33861 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium;species:Sphingobacterium spiritivorum; 6.997330662 6.732562125 7.112905419 6.603996089 7.429325576 77964943 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.604455128 7.560836677 7.557361922 8.113219245 8.042370461 7.878922244 11342602 B_lactamase_C Antibiotic resistance Beta-lactamases Ochrobactrum anthropi superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum; 7.406476982 7.627145101 7.628581094 7.341632168 7.827775818 7.40257338 7.519118934 7.7120712 7.455637326 66801851 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 7.058518288 7.511808667 7.161972502 6.929378579 6.984687242 7.431028953 7.482669869 31407690 pheA Organic Remediation Aromatics Other aromatics Acinetobacter calcoaceticus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 7.22851852 7.263756859 7.096632793 6.752840729 7.643998155 6.891587294 6.878093932 7.172019662 33567880 ChrA Metal Resistance Chromium Bordetella bronchiseptica RB50 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella bronchiseptica; 8.281592417 8.300262399 8.150925538 8.01119039 8.614288811 8.322758822 8.14946145 8.245813669 8.225033504 85687851 amyA Carbon cycling Carbon degradation Starch Erythrobacter sp. NAP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 7.593953796 7.550131906 7.400836153 6.969693621 7.168480721 7.485046057 7.62831873 7.318434684 145223677 TehB Metal Resistance Tellurium Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8.048566205 7.986842149 7.649277121 7.920309109 7.94129535 7.826549885 7.995742611 7.855333066 7.825997516 183222447 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira biflexa; 6.819428648 7.00754475 7.015098508 121534175 CopA Metal Resistance Copper Thermosinus carboxydivorans Nor1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Thermosinus;species:Thermosinus carboxydivorans; 7.214288513 7.37058935 7.095993179 6.777296294 6.970785286 7.717813115 258636865 pstC Stress Phosphate limitation Pantoea sp. At-9b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 7.408754329 7.265662606 7.400338133 7.361691698 115394390 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7.544376115 7.197486923 72388575 gyrB other category gyrB Psychrobacter faecalis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 6.926227203 6.987244145 125999788 fnr Stress Oxygen stress Shewanella baltica OS155 6.94244767 6.914843466 142189 dsrA Sulphur sulfite reductase Archaeoglobus fulgidus superkingdom:Archaea;phylum:Euryarchaeota;class:Archaeoglobi;order:Archaeoglobales;family:Archaeoglobaceae;genus:Archaeoglobus; 7.640136597 7.745677485 7.459746218 7.338365682 7.615563548 7.535260388 73541722 fnr Stress Oxygen stress Ralstonia eutropha JMP134 7.428927856 7.579223407 7.896554332 7.475811345 7.806325365 7.390858115 7.689487112 7.505258457 149128779 ChrA Metal Resistance Chromium Bacteroides caccae ATCC 43185 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides caccae; 7.40868997 8.015765852 119226134 gyrB other category gyrB Rhodococcus equi superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8.059759645 7.84598366 7.624325643 7.39187398 7.636403708 7.65271152 7.656413909 7.492365059 7.553558766 218224017 proV Stress Osmotic stress Parabacteroides johnsonii DSM 18315 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides johnsonii; 8.106400291 7.823787685 7.552679557 7.503641192 7.940996815 7.907601898 7.471392614 7.486051097 7.420563947 94551898 pstB Stress Phosphate limitation Candidatus Koribacter versatilis Ellin345 7.11410074 6.989178434 7.257593294 6.896164857 56477213 pchCF Organic Remediation Aromatics BTEX and related aromatics Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 7.587546499 7.627457758 7.578444082 7.407697678 7.778963785 8.147290196 7.904990221 7.399781407 7.48942577 119898267 CDD Organic Remediation Aromatics Other aromatics Azoarcus sp. BH72 7.571955994 7.384286014 7.060193455 7.160742523 7.937684888 50871664 gyrB other category gyrB Pseudomonas mendocina superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.41508938 7.336956608 7.371657172 7.586101634 7.266581587 7.794503412 7.424363223 7.387495599 7.485070088 32350333 primase Bacteria phage REPLICATION Enterobacteria phage RB69 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.374874491 6.955764109 156742382 catechol_B Organic Remediation Aromatics Other aromatics Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 7.041878311 7.225844961 7.173850164 7.017040228 7.49918852 255063833 SMR_antibiotics Antibiotic resistance transporter Nitrosomonas sp. AL212 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 7.279020103 7.28240836 7.007563857 7.598922768 7.175232325 7.277790553 124260305 ArsC Metal Resistance Arsenic Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 8.03992083 7.924795274 7.433537783 7.913319677 7.770402706 8.075129234 7.573361021 7.365845343 7.658323537 124300765 gyrB other category gyrB Erwinia mallotivora superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia; 7.837925481 7.882277549 7.701298746 7.888821859 7.59483505 7.869394593 7.580433181 7.960488291 7.68086537 219850260 CopA Metal Resistance Copper Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 7.643726627 7.389284813 7.222600247 7.723636669 7.515036749 7.670959947 7.476054204 7.588809164 56809441 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.301295158 7.353256564 7.298951419 7.120326283 7.157241977 7.52836254 7.273094868 7.092020905 7.287432757 88787563 pstB Stress Phosphate limitation Synechococcus sp. WH 7805 7.785616553 7.900076653 7.49233645 7.537826581 7.637963738 7.669463906 7.673744231 7.635220414 7.4361309 91217715 ZntA Metal Resistance Zinc Psychroflexus torquis ATCC 700755 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Psychroflexus;species:Psychroflexus torquis; 7.74259039 7.490314894 7.700058073 7.462035658 12597948 hydrogenase Energy process Energy process Desulfovibrio vulgaris superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 8.225793449 8.03749689 7.790491152 7.847754209 8.32959772 7.886658606 7.915861778 7.777008847 8.284110217 15840078 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium tuberculosis CDC1551 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 8.043459496 8.300731623 8.264796342 8.18743172 8.603691311 7.963230601 8.564329333 8.501125166 8.175859424 91782706 type_III_secretion virulence secretion Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 6.980189434 7.396901311 7.098533725 6.792105348 6.987857203 7.480376016 192802178 gyrB other category gyrB Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.258947225 7.066721702 7.491098985 7.424293643 7.177515707 7.327955749 7.459126774 90424574 CODH Carbon cycling Carbon fixation Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.969509175 7.895638909 8.030410975 8.420166143 8.36293473 8.636849388 8.120257015 156530850 gyrB other category gyrB Enterobacter sakazakii ATCC BAA-894 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 7.440554292 7.272232627 7.470068783 7.128976581 7.636925269 7.068787568 6.993537682 56785448 phenol_oxidase Carbon cycling Carbon degradation Lignin Trametes sp. 420 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 7.606543297 7.372270296 7.41066219 7.541645432 7.881125795 254427103 AceB Carbon cycling Carbon degradation others Alcanivorax sp. DG881 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 7.28670542 7.670512797 7.662675783 7.043106092 7.248733355 7.797852735 146403704 cytochrome_c Bioleaching Electron transport Acidiphilium cryptum JF-5 7.354340126 7.263923339 7.396281369 6.991822226 7.390812139 7.399784716 7.467717393 7.401467027 7.352504755 256425170 sigma_24 Stress Sigma factors Chitinophaga pinensis DSM 2588 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 7.613083106 6.919889021 7.165374874 7.264830716 7.31414375 7.279445933 56964778 alkH Organic Remediation Other Hydrocarbons Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 7.78319523 7.700127533 7.467728844 89090053 cadBD Metal Resistance Cadmium Lactobacillus reuteri JCM 1112 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus reuteri; 7.225103053 7.066016638 7.002853685 6.799186876 6.886256108 7.335783644 209401710 narG Nitrogen Denitrification uncultured bacterium 7.707797179 7.78997203 7.836785429 7.754355901 7.369553581 7.563892196 7.840282697 186475896 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.709787952 7.495105652 7.211341482 7.312987812 7.447283081 7.744066847 7.490084687 7.359261338 7.766853988 218463000 nhh Organic Remediation Aromatics Nitoaromatics Rhizobium etli Kim 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.466122562 7.287545598 7.459874576 7.379409449 7.652973309 7.176981464 7.345556155 7.3712876 88912859 xylA Carbon cycling Carbon degradation Hemicellulose Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 7.643368774 7.67509939 7.542999125 6.838749934 7.616463103 7.700363161 7.489721917 7.287102464 7.596669383 218288680 glnA Stress Nitrogen limitation Alicyclobacillus acidocaldarius LAA1 8.17574658 7.889961343 7.784406321 8.108202413 8.005458905 8.370472744 8.057228459 8.125395562 8.121460367 190890943 groEL Stress Heat shock Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.582868498 7.621571469 7.715887757 7.390598764 7.481129137 7.969297934 7.721001438 7.380564294 7.783768105 239909817 pstA Stress Phosphate limitation Thermococcus gammatolerans EJ3 7.649454259 7.327815743 7.377237725 7.466207029 7.232364399 7.602327478 7.301739864 7.537254877 91775145 pstB Stress Phosphate limitation Methylobacillus flagellatus KT 7.319602672 7.427248306 7.184824556 6.926638499 7.477681456 7.03493442 6.797969917 256578814 sigma_32 Stress Sigma factors Desulfomicrobium baculatum DSM 4028 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfomicrobiaceae;genus:Desulfomicrobium;species:Desulfomicrobium baculatum; 8.05672038 7.917190473 7.729436768 7.715461122 8.478729806 8.195467273 8.186332006 7.880397005 8.245487028 121593639 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 7.835840219 7.712889952 7.419406795 7.562466562 7.600028699 7.66981515 7.444246515 209695810 ArsC Metal Resistance Arsenic Aliivibrio salmonicida LFI1238 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Aliivibrio salmonicida; 7.164945275 7.10013104 7.100499422 23393001 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.545662914 7.27692121 7.681679 7.945369206 7.601884267 8.17635056 7.235569946 7.345390963 7.925745034 254480226 AceB Carbon cycling Carbon degradation others marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.788765839 7.217958254 7.576902062 7.612909782 7.470479616 7.665982202 7.351763336 7.813772629 32308033 narG Nitrogen Denitrification uncultured bacterium 7.963034332 7.719266479 7.221880685 7.794138265 7.642913563 7.692884422 7.469103072 7.482943596 159121601 sigma_70 Stress Sigma factors Rickettsiella grylli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Coxiellaceae;genus:Rickettsiella; 6.537892334 7.299382285 52347164 xylanase Carbon cycling Carbon degradation Hemicellulose Bacillus licheniformis DSM 13 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 7.515670606 7.381537803 7.136638324 6.995303208 6.871181236 7.733518008 239904901 pstB Stress Phosphate limitation Desulfovibrio magneticus RS-1 7.094223343 7.267992752 7.61349221 68164503 ChrA Metal Resistance Chromium uncultured bacterium BAC17H8 superkingdom:Bacteria; 7.921479828 7.724263659 7.761434072 7.399342207 7.606965356 7.67422945 7.523466778 7.677423861 7.602932202 116804592 nasA Nitrogen Assimilatory N reduction uncultured prokaryote 7.258633093 7.304442653 6.792602006 7.373258844 7.711377858 7.251571162 7.296258075 7.133367806 117168629 phtA Organic Remediation Aromatics Aromatic carboxylic acid Polyangium cellulosum superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium; 7.403660804 7.176615423 7.120769287 6.634107971 6.771156783 7.379465996 7.065496553 7.125080061 83648151 clpC Stress Protein stress Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 7.726411163 7.502055898 7.367918711 551239 pectinase Carbon cycling Carbon degradation Pectin Pectobacterium carotovorum superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium; 7.258250275 7.526880532 7.411356065 6.878156796 7.338789825 7.677397306 151559271 pcc Carbon cycling Carbon fixation Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 7.663864454 7.365546008 7.432684512 7.226816504 7.338810787 7.727722359 7.23231983 7.370857467 7.6408721 5359710 mannanase Carbon cycling Carbon degradation Hemicellulose Cellulomonas fimi superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas; 7.924959857 7.753563755 7.33011695 7.314657471 7.447910852 92432771 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.609741379 7.80168186 7.616801886 7.759856896 7.617546811 7.818009955 127513450 cytochrome Energy process Energy process Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 7.443609667 7.371302162 7.311281578 221723008 pstA Stress Phosphate limitation Agrobacterium radiobacter K84 7.271179395 7.149033703 7.289955565 7.173521227 7.421117052 7.671218138 7.495192925 7.106986329 7.401040797 209909073 ArsC Metal Resistance Arsenic Enterobacter cancerogenus ATCC 35316 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 7.063837272 6.800716758 254443116 B_lactamase_C Antibiotic resistance Beta-lactamases Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 7.518419591 7.317069668 7.151970727 7.46650874 156719515 dmsA Organic Remediation Others Hydrogenobaculum sp. Y04AAS1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenobaculum; 7.081919546 6.83334395 7.211622658 6.980844318 6.640422537 7.678913531 7.05337533 7.175706957 7.101038887 212540582 ABC_antibiotic_transporter Antibiotic resistance transporter Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.374920421 7.103854219 7.34485902 7.087277946 7.014558198 219847826 sigma_70 Stress Sigma factors Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 8.109070584 8.135084372 8.219380608 8.041346204 8.508189682 8.379844076 8.404811662 8.301775231 269139007 amyA Carbon cycling Carbon degradation Starch Edwardsiella tarda EIB202 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella tarda; 7.97846543 8.013215315 7.935395844 7.445794241 7.973622138 8.007996829 7.875982735 7.897952371 7.317293453 212706880 CopA Metal Resistance Copper Providencia rustigianii DSM 4541 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 7.079324623 7.101361889 28852778 pcaG Organic Remediation Aromatics Other aromatics Pseudomonas syringae pv. tomato str. DC3000 7.600741093 7.512710239 7.449993246 7.549735483 7.692720614 7.636900581 7.725652912 7.742194945 115417908 fcbA Organic Remediation Aromatics Chlorinated aromatics Arthrobacter sp. FG1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8.166407786 8.000910498 8.053869818 7.969463735 8.005824923 8.093525587 7.81890565 7.580978062 226244618 narH Stress Oxygen limitation Rhodococcus opacus B4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 7.851591202 7.757814005 7.938039414 8.190346048 7.800578325 8.441776457 7.959581723 7.837967951 7.471330479 118435649 sox Sulphur Sulphur oxidation Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 8.283626005 7.929462535 7.907485057 7.898253867 8.26941961 8.383517947 7.657444685 7.830372427 254786594 fnr Stress Oxygen stress Teredinibacter turnerae T7901 7.340745989 7.479998477 7.362252848 6.894834915 7.501516605 120608873 nagG Organic Remediation Aromatics Aromatic carboxylic acid Acidovorax avenae subsp. citrulli AAC00-1 9.669616919 9.81128818 9.448855466 119497789 ara_fungi Carbon cycling Carbon degradation Hemicellulose Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 7.235142866 7.600358987 7.143766749 7.340976523 7.60954424 7.766923043 7.515102654 7.634322291 7.553002453 241777120 hly virulence hemolysin Allochromatium vinosum DSM 180 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 7.716981669 7.61360441 7.381962882 7.652264904 7.697090423 7.541561337 7.4678943 7.825211306 7.895598392 193201372 helicase_family_4 Bacteria phage REPLICATION Klebsiella phage K11 7.272258711 7.09844387 7.179622471 7.386466833 7.650855967 7.538473729 7.459748412 7.380615136 146156567 ChrA Metal Resistance Chromium Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 7.250062339 7.587968788 7.631379425 7.366786161 7.279626907 7.822546888 7.025457764 7.10971758 209171676 dsrA Sulphur sulfite reductase Candidatus Thiobios zoothamnicoli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Candidatus Thiobios; 7.738980488 7.711455963 7.807826038 7.618945761 7.501095916 7.69122031 8.226511474 7.553616805 13472464 mer Metal Resistance Mercury Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 7.375357914 7.418959072 7.261564731 7.144148543 7.575211212 7.725519485 7.731261111 7.563521462 7.868024878 119356866 pstC Stress Phosphate limitation Chlorobium phaeobacteroides DSM 266 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 6.812631112 6.654476496 170774256 Catechol Organic Remediation Aromatics Other aromatics Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 8.03177225 7.827947506 7.624793267 7.663351094 7.629629761 7.897827073 7.930312838 7.972929225 7.805092816 27380395 mhpA Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.044205587 7.19109323 7.376222197 7.394713731 6.862093616 7.633873771 6.941814525 7.142856384 7.530337972 119963753 gyrB other category gyrB Arthrobacter aurescens TC1 8.041821708 8.023908097 7.70101364 7.594391617 7.594368209 8.027551025 7.904335111 7.605867885 7.620138177 15196 Host_recognition_T4_type Bacteria phage HOST RECOGNITION/STRUCTURAL Enterobacteria phage T2 order:Caudovirales;family:Myoviridae;genus:T4-like viruses;species:Enterobacteria phage T4 sensu lato; 6.924519239 7.157499947 163867357 hrcA Stress Heat shock Bartonella tribocorum CIP 105476 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella tribocorum; 7.374571433 7.19374201 6.967670789 7.153183437 7.080386545 7.81991861 6.991109093 7.275500284 7.170355472 78367553 pcc Carbon cycling Carbon fixation Shewanella sp. PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 7.778079814 7.733120179 8.103624412 8.362942842 8.421172005 8.63253855 8.429741 8.308020064 8.448927022 160876724 ChrA Metal Resistance Chromium Shewanella baltica OS195 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 7.170172646 7.156887287 7.26612529 6.826879974 7.005572226 7.324850495 7.099813911 6.970180463 7.399641604 39943524 tftH Organic Remediation Aromatics Chlorinated aromatics Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 7.307129849 7.284953957 7.204720733 7.205754457 6.995142049 7.137840971 167855043 obgE Stress Radiation stress Haemophilus parasuis 29755 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus parasuis; 7.257179088 6.9913102 7.194212875 6.800216191 7.226893072 78170095 sigma_70 Stress Sigma factors Synechococcus sp. CC9902 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.448279822 7.750198497 7.523067588 7.432502825 7.634224961 8.118595308 7.815478003 7.627211083 7.881602303 86280236 alkK Organic Remediation Others Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.88973632 7.671855689 7.513707797 7.466641478 8.04302082 71554888 alkK Organic Remediation Others Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 7.529415833 7.357204478 7.88629018 7.952628226 7.518190343 7.931261001 7.529256004 7.702502796 7.828305372 117979928 phn Organic Remediation Herbicides related compound Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.348714503 7.607151702 7.519533891 7.43281565 7.993387561 7.339828615 7.581850243 7.66035085 10956964 HcaACD Organic Remediation Aromatics Aromatic carboxylic acid Novosphingobium aromaticivorans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 7.365773099 7.481213881 7.492321721 7.721318757 7.626862478 7.897964866 7.898610051 7.804264475 7.590622856 169335442 obgE Stress Radiation stress Anaerofustis stercorihominis DSM 17244 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Anaerofustis;species:Anaerofustis stercorihominis; 7.506476903 7.807223906 7.436275621 7.319216044 7.795736368 7.259419169 7.803990567 21314953 napA Nitrogen Dissimilatory N reduction Bradyrhizobium japonicum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.514539198 7.529491296 7.56065388 7.276162506 7.547787972 254514620 B_lactamase_A Antibiotic resistance Beta-lactamases gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.426390989 7.205129801 145217424 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 7.191473362 7.554062278 7.93593733 7.253792074 7.828414481 7.100413484 7.432215045 254000081 sigma_70 Stress Sigma factors Methylovorus sp. SIP3-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylovorus; 7.327240049 7.063049372 7.002418029 6.747618463 7.009143493 7.68638148 7.080294028 7.120028826 251756907 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 7.17066545 7.325099691 7.173020366 7.171212219 7.514733002 150010120 cda Carbon cycling Carbon degradation Starch Parabacteroides distasonis ATCC 8503 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides distasonis; 7.697097846 7.447244191 7.410385512 7.094970357 7.688309442 8.107898667 7.598736895 7.729524918 145574013 pilin virulence pilin Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 6.956473581 7.246854824 56180234 ArsC Metal Resistance Arsenic Idiomarina loihiensis L2TR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina loihiensis; 8.001703603 8.127303057 8.096107102 7.814703134 8.072579409 8.001607305 8.298987302 7.511734385 7.721322279 270492706 sigma_24 Stress Sigma factors Acidovorax avenae subsp. avenae ATCC 19860 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax avenae; 7.295621223 8.192033166 7.891173911 7.287935726 7.487728237 7.754621686 7.856087645 7.524803435 241518550 GroES Stress Heat shock Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.031554885 7.055896549 6.604391624 7.425771074 7.143023482 7.400541735 6689527 merP Metal Resistance Mercury Xanthomonas campestris superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas; 7.221681031 6.976120894 73763040 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.868802209 7.937713026 8.110480833 7.268577296 7.842292764 8.171181261 7.754488882 7.709913432 7.763635963 216857 Arylest Organic Remediation Aromatics Other aromatics Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.745457429 7.544007417 7.905314117 7.819435615 8.305273763 8.196185628 8.07286553 7.989318141 91802634 CopA Metal Resistance Copper Nitrobacter hamburgensis X14 7.156857689 7.715115517 7.482498876 7.631094228 7.542052472 74038278 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.380185737 8.155904584 8.164041435 7.224825732 8.129742722 7.787283454 7.720303817 7.947367512 7.430837564 73763022 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.437143435 7.762545862 7.61313408 7.604954665 7.603543276 7.819234072 7.853599974 8.381088106 7.931522261 149822917 Arylest Organic Remediation Aromatics Other aromatics Limnobacter sp. MED105 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 7.290362985 7.231584895 7.056109133 7.495192225 7.308540323 7.478127127 257821835 srt virulence surface protein "Enterococcus faecium 1,231,501" superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus faecium; 7.648540881 7.246745253 7.426084312 20278787 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.998235943 7.332019343 7.749487746 7.783863325 7.917119812 7.669798475 7.581583705 7.439079192 88790795 ahpC Stress Oxygen stress Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 7.959475133 7.960511337 7.840271661 7.949073844 7.947852262 7.749679121 7.66342244 7.860122513 7.709209653 258522432 ABC_antibiotic_transporter Antibiotic resistance transporter Corynebacterium genitalium ATCC 33030 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium genitalium; 7.579561233 7.220854136 6.96956627 7.743987607 7.700624554 7.399175793 7.525299144 147919136 atzA Organic Remediation Herbicides related compound uncultured methanogenic archaeon RC-I superkingdom:Archaea;phylum:Euryarchaeota; 7.533160038 7.439894995 7.279846667 6.948920623 7.547690645 7.457683005 7.060150167 7.268582436 68536549 pimF Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium jeikeium K411 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 7.857339756 7.618720813 8.035367847 7.099721957 7.63761769 7.345466463 7.890808976 23451181 gyrB other category gyrB Aeromonas enteropelogenes superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas; 7.052768742 7.251826558 7.740451468 218564246 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus 7.764831823 7.528018835 220711157 silC Metal Resistance Silver Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.974756207 7.623763033 7.802436635 7.431647475 7.145866569 7.909607679 7.814264789 8.086872519 254483127 grpE Stress Heat shock marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.607296595 7.59670425 7.775619762 7.495764007 7.701923414 7.622931254 7.695537988 7.02749431 255509317 obgE Stress Radiation stress Clostridium carboxidivorans P7 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium carboxidivorans; 7.09792171 6.857322949 7.206160768 116093208 obgE Stress Radiation stress Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus delbrueckii; 7.718260635 7.72888825 7.72567352 7.21515049 7.843964528 8.054292661 7.835333432 7.645291721 7.575354324 9971301 gyrB other category gyrB Marinospirillum megaterium superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinospirillum; 7.417975651 7.639395517 120601385 cytochrome Energy process Energy process Desulfovibrio vulgaris subsp. vulgaris DP4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 8.195587869 8.12996386 7.767807483 8.445216922 8.474777964 8.024970084 8.28051548 8.247493651 8.28271702 260889989 hly virulence hemolysin Leptotrichia hofstadii F0254 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteria;order:Fusobacteriales;family:Fusobacteriaceae;genus:Leptotrichia;species:Leptotrichia hofstadii; 7.384020354 7.359417697 6.857242671 7.179030082 7.848065605 55469829 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.250478784 7.155112963 7.111582143 6.808285621 7.161237347 7.453925165 7.528007312 7.40223413 7.488906534 35214984 TerC Metal Resistance Tellurium Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 6.954391467 7.410442488 7.169319127 145298517 pstB Stress Phosphate limitation Aeromonas salmonicida subsp. salmonicida A449 8.113665725 7.680985134 7.872142233 7.933819495 7.828164784 7.769991959 7.822356808 7.753682407 8.177831988 186463828 pstC Stress Phosphate limitation Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 7.657893157 7.439310764 7.406665167 7.401218665 7.53881295 119719996 glnA Stress Nitrogen limitation Thermofilum pendens Hrk 5 7.669253653 7.506875967 7.699411989 7.321642822 7.22254243 7.84593663 7.626566736 7.295548634 7.380799725 186459234 ara Carbon cycling Carbon degradation Hemicellulose bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 7.024488711 7.456900765 7.227248268 6.802322683 7.109688233 7.575168375 7.135946323 7.146157995 7.399976635 134095881 silC Metal Resistance Silver Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 7.524595941 7.443704142 7.184823234 6.927972409 7.500192111 7.828619347 222453067 CopA Metal Resistance Copper Halorubrum lacusprofundi ATCC 49239 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 7.506607737 7.563211467 7.308325592 7.174061113 7.472502115 7.49707507 7.188556031 7.388211557 7.600553751 209501274 tfdA Organic Remediation Aromatics Chlorinated aromatics Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.429399865 7.571332682 7.593655087 7.709537013 7.303168985 7.707666447 209871380 CusA Metal Resistance Copper Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 7.535814132 7.559000928 7.378554412 7.427700859 7.560506437 7.19452155 7.50321979 7.1880932 83757522 obgE Stress Radiation stress Salinibacter ruber DSM 13855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 8.131183544 8.092517813 8.010975541 8.18984254 8.260790724 8.184884568 8.467042291 8.220844834 162329629 B_lactamase_C Antibiotic resistance Beta-lactamases Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.708786931 7.568454248 7.675664355 7.711408916 7.806019671 119401629 amyA Carbon cycling Carbon degradation Starch Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7.527389726 7.259370283 7.214378867 261405228 sigma_24 Stress Sigma factors Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.751331264 7.556737633 7.313109597 7.360716045 7.620454678 7.910762565 7.411465718 7.229734813 7.387486127 167837782 phn Organic Remediation Herbicides related compound Burkholderia thailandensis MSMB43 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 7.789232791 7.82739455 7.794643124 7.661283096 7.657964508 7.829221501 7.721672153 7.593390413 163841959 alkK Organic Remediation Others Renibacterium salmoninarum ATCC 33209 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Renibacterium;species:Renibacterium salmoninarum; 7.228978288 7.409794814 7.161481505 7.473880438 148844451 grpE Stress Heat shock Planctomyces maris DSM 8797 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces maris; 7.709161845 7.745254988 7.69824332 7.336316291 7.860271981 7.8488096 7.982908461 7.81737901 7.67347929 146339288 tftH Organic Remediation Aromatics Chlorinated aromatics Bradyrhizobium sp. ORS278 8.244278929 8.06880194 8.042642951 8.278843771 7.918976442 7.805207502 8.005131054 7.939931767 7.918220447 262202658 ureC Nitrogen Ammonification Gordonia bronchialis DSM 43247 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 7.907349089 7.760763676 7.731259053 7.617792066 7.898226701 8.082299737 7.806346837 7.361317093 7.731445264 194565418 exochitinase Carbon cycling Carbon degradation Chitin Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 8.194594331 7.964930959 7.441453974 7.842409663 7.686100264 8.003726397 7.909585784 8.02931292 7.542565605 237846142 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.516764625 7.396160383 7.347316648 7.019708264 7.338522394 7.461280121 7.600103088 7.414166949 7.083295396 222528456 sigma_24 Stress Sigma factors Anaerocellum thermophilum DSM 6725 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Anaerocellum;species:Anaerocellum thermophilum; 7.282638621 7.116911263 115516885 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.449389852 7.781638726 7.392888012 7.622650661 7.538966652 88702651 nosZ Nitrogen Denitrification uncultured soil bacterium superkingdom:Bacteria; 8.40512239 8.499894519 8.161313291 8.013999455 8.441941104 8.380648829 8.2083185 8.538174757 156108270 pulA Carbon cycling Carbon degradation Starch Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 7.254011235 7.023696953 7.192343424 7.302687445 6.977118144 114542709 fnr Stress Oxygen stress Roseovarius sp. HTCC2601 7.986970731 7.506489845 7.545085501 7.49166577 8.10415307 7.944528503 8.18205266 8.292490302 126178944 proV Stress Osmotic stress Methanoculleus marisnigri JR1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanoculleus;species:Methanoculleus marisnigri; 7.752746801 7.624668802 7.689101105 7.844319422 7.154098741 7.929005323 7.009103669 7.323878775 15896677 ara Carbon cycling Carbon degradation Hemicellulose Clostridium acetobutylicum ATCC 824 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium acetobutylicum; 7.496085369 7.339856927 7.223610429 7.171869584 7.40989434 78219586 hydrogenase Energy process Energy process Desulfovibrio desulfuricans G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 7.471699994 7.181885504 7.585354923 7.316843374 7.631626872 7.747419462 7.632535163 7.492321651 7.51748205 72117264 pcc Carbon cycling Carbon fixation Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.796892457 7.949679012 7.836759438 7.179078892 7.833092492 7.810400069 7.680401697 7.476205466 7.849086436 146188556 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.462684237 7.390570761 7.239908598 7.23391302 7.35244318 7.509700228 161328185 cytochrome Energy process Energy process Shewanella benthica KT99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella benthica; 7.555682896 7.429684676 6.988679707 6.803406437 6.892648697 160932272 ara Carbon cycling Carbon degradation Hemicellulose Clostridium leptum DSM 753 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 7.311765732 7.488373066 7.795762072 7.986831214 7.704703932 7.250218527 6.790341323 148554604 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 7.544684129 7.266281275 7.476074639 7.783536097 7.558987813 7.742963092 7.802128624 7.864102694 161331342 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Shewanella benthica KT99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella benthica; 6.908889832 6.938910407 116098697 ppk Phosphorus Phosphorus utilization Lactobacillus brevis ATCC 367 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus brevis; 8.199339848 7.656776961 7.82218574 7.852961534 8.167493888 8.400384966 8.253844698 7.75053309 8.050466644 86282246 ArsC Metal Resistance Arsenic Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.806217246 7.911605198 8.055473102 7.411273715 7.994154274 7.633770344 7.985896402 7.842631416 8.096550613 42522966 oxyR Stress Oxygen stress Bdellovibrio bacteriovorus HD100 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 7.354173307 7.447528251 7.30285124 7.673526602 7.16156286 7.451514159 49473816 obgE Stress Radiation stress Bartonella quintana str. Toulouse superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella quintana; 7.077713125 6.97627052 86750858 fnr Stress Oxygen stress Rhodopseudomonas palustris HaA2 7.434914062 7.615886883 7.45370935 7.504990809 7.289718239 172072316 pcc Carbon cycling Carbon fixation Micrococcus luteus NCTC 2665 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus;species:Micrococcus luteus; 7.428578738 7.719916226 7.884260158 8.004252172 7.655752089 7.653835172 7.842784307 7.653792565 220927406 nhh Organic Remediation Aromatics Nitoaromatics Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 7.434097453 7.199217685 7.085334579 7.154644381 238695398 Host_recognition_T2_type Bacteria phage HOST RECOGNITION/STRUCTURAL Enterobacteria phage JS10 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.525319596 7.650707276 7.434637929 7.636567225 7.727237065 7.682237996 126740010 fnr Stress Oxygen stress Roseobacter sp. SK209-2-6 7.041710283 7.152807499 6.977909067 6.956387616 7.470226479 7.230388824 6.942217694 6.916457181 19553872 clpC Stress Protein stress Corynebacterium glutamicum ATCC 13032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 7.582805391 7.219998095 7.252163477 6.863633735 7.181217483 7.451877819 7.229029006 7.071715303 227512146 obgE Stress Radiation stress Lactobacillus buchneri ATCC 11577 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus buchneri; 7.167059007 6.98884518 7.065514402 6.924905599 7.453489359 90195278 nhh Organic Remediation Aromatics Nitoaromatics Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 7.571697685 7.672099103 7.391280132 6.869993614 7.434494129 7.468771377 7.395214306 7.464790524 7.458977467 238753122 pap virulence adhesin Yersinia rohdei ATCC 43380 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia rohdei; 6.987809489 7.020820538 6.532794191 7.241009744 282587890 sigma_70 Stress Sigma factors Prevotella bivia JCVIHMP010 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bivia; 6.91171745 7.204804727 7.159085894 6.733700841 7.292346474 115523281 NiR Nitrogen Assimilatory N reduction Rhodopseudomonas palustris BisA53 7.852365732 7.73657887 7.467255254 7.29399671 213959649 CopA Metal Resistance Copper Propionibacterium acnes SK137 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 7.870571129 7.600261802 8.004197639 7.553771622 7.928841905 7.607490906 7.600216389 7.765344028 7.985147094 193222353 pimF Organic Remediation Aromatics Aromatic carboxylic acid Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 7.078939861 6.763110316 7.211599647 6.943091948 6.876304343 118430473 CODH Carbon cycling Carbon fixation Stappia conradae superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Stappia; 7.771661488 7.599985323 7.536682712 7.419395119 7.286506195 7.816023111 7.35195193 7.421821997 229916142 glnA Stress Nitrogen limitation Exiguobacterium sp. AT1b 7.515418783 7.200934501 7.290140433 6.805568669 6.940343756 7.392110116 206901708 ara Carbon cycling Carbon degradation Hemicellulose Dictyoglomus thermophilum H-6-12 superkingdom:Bacteria;phylum:Dictyoglomi;class:Dictyoglomia;order:Dictyoglomales;family:Dictyoglomaceae;genus:Dictyoglomus;species:Dictyoglomus thermophilum; 7.249559498 7.108243172 88795283 mer Metal Resistance Mercury Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 7.124840632 7.201240167 7.072455188 6.930341378 7.458781231 7.153627623 7.568349359 7.672514 149928285 atzA Organic Remediation Herbicides related compound Limnobacter sp. MED105 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 8.03227354 7.474333645 7.599230763 7.344717158 7.636800757 7.68633716 7.731509018 89347051 fnr Stress Oxygen stress Rhodoferax ferrireducens T118 7.536223675 7.637944469 7.291682878 7.300979729 7.69565839 7.520785478 7.485170823 7.7568682 261369946 pstC Stress Phosphate limitation Methanocaldococcus vulcanius M7 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanocaldococcaceae;genus:Methanocaldococcus;species:Methanocaldococcus vulcanius; 6.834337695 7.349968347 156861194 endochitinase Carbon cycling Carbon degradation Chitin Bacteroides uniformis ATCC 8492 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides uniformis; 7.434277466 7.501160929 7.202673302 6.989053599 6.694663935 7.372147698 227351727 obgE Stress Radiation stress Leuconostoc mesenteroides subsp. cremoris ATCC 19254 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc mesenteroides; 7.626079448 7.606307541 7.68309918 7.615267117 7.453395876 7.780470268 7.582677758 7.603532212 169758244 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.653292976 8.040382009 7.842199701 7.361608425 7.917381467 7.467888713 7.624893156 7.525854181 8.329772983 115360844 B_lactamase_C Antibiotic resistance Beta-lactamases Burkholderia ambifaria AMMD superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 7.497397111 7.619410363 7.625739156 7.641175875 7.804156589 7.978160434 7.912726539 7.511028612 7.82597561 160931979 ara Carbon cycling Carbon degradation Hemicellulose Clostridium leptum DSM 753 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 7.522591861 7.321293988 7.199098452 6.871062117 7.424505822 7.416313771 7.312823753 257168588 amyA Carbon cycling Carbon degradation Starch Halomicrobium mukohataei DSM 12286 7.680349872 7.414991499 7.450684898 7.662633946 7.318740409 7.76799982 7.447727418 7.330221269 7.495259544 220911958 iro virulence Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 7.459987256 7.650400283 7.352628165 7.382980514 7.789405231 7.690490721 7.562631694 7.800023335 90104805 phn Organic Remediation Herbicides related compound Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.12967574 7.14741406 6.740950676 7.109167281 7.314415659 6.985892907 7.005225482 219993429 hrcA Stress Heat shock Halothermothrix orenii H 168 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Halanaerobiales;family:Halanaerobiaceae;genus:Halothermothrix;species:Halothermothrix orenii; 8.14341022 7.886059084 124267712 ChrA Metal Resistance Chromium Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 7.999692554 8.292211649 8.120112969 7.958222139 8.576284198 8.233253105 8.359999962 8.158234468 8.088448362 148500173 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 7.342834283 7.372647188 6.893306003 7.240900433 7.295517785 7.05951942 7.495233141 163790377 gyrB other category gyrB Carnobacterium sp. AT7 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Carnobacteriaceae;genus:Carnobacterium; 7.614288211 7.419572806 7.206875089 7.531916197 7.897507058 7.481814588 7.393748952 189008016 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 8.258125974 7.932505087 8.008423147 7.41628808 8.051093662 7.987678391 8.252139712 7.800327347 2660542 CopA Metal Resistance Copper Helicobacter felis superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter; 7.077374036 7.204658228 7.326358616 7.335668953 7.941821009 7.260536403 7.019883679 226973646 contractile_tail_sheath_protein Bacteria phage STRUCTURAL Shigella phage phiSboM-AG3 order:Caudovirales;family:Myoviridae; 7.296081928 7.183441179 7.118286727 6.898358118 7.73668173 77739546 gyrB other category gyrB Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.891088749 7.614410526 148260709 heat_shock_protein Bioleaching other category Acidiphilium cryptum JF-5 7.958945464 7.82761224 7.711047218 7.574750302 7.926983153 8.020971116 7.728349465 7.624769647 8.051264507 254441872 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 7.188559074 7.170286416 7.197042077 6.749799483 7.105373843 7.613222813 7.362396169 7.239001078 7.334630326 77696904 CODH Carbon cycling Carbon fixation Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.828523055 7.70266684 7.925450331 8.045156978 7.940465539 8.337559324 7.858193244 7.782354554 7.754485444 213926290 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas syringae pv. tomato T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 7.125198197 7.660856158 257152017 srt virulence surface protein Lactobacillus rhamnosus Lc 705 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 7.158255438 7.181334988 7.193416918 6.957334904 7.158120452 7.604551892 7.626044029 7.210961186 222422425 katE Stress Oxygen stress Staphylococcus carnosus subsp. carnosus TM300 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus carnosus; 7.148140982 7.315900952 7.013169999 6.738498309 7.592536105 148242001 endochitinase Carbon cycling Carbon degradation Chitin Synechococcus sp. RCC307 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.507962659 7.772449362 7.529935811 7.514702484 7.818326817 7.792624337 7.819842635 7.698822182 7.466232086 57233724 rd Organic Remediation Chlorinated solvents Dehalococcoides ethenogenes 195 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides;species:Dehalococcoides ethenogenes; 7.542232817 8.019024536 8.20290505 7.848424217 8.354244666 8.292660089 8.161107536 8.243520522 167216116 toxin virulence toxin Corynebacterium ulcerans superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium; 7.463220381 7.496959674 7.301700721 127511483 gyrB other category gyrB Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 7.060181929 6.661369691 6.800539231 152994542 mdlD Organic Remediation Aromatics Other aromatics Marinomonas sp. MWYL1 7.584241844 7.831840281 7.842355557 7.392040943 7.309961571 7.527289362 7.606780857 7.830219656 81429391 clpC Stress Protein stress Lactobacillus sakei subsp. sakei 23K superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus sakei; 7.605700522 7.274620087 7.898021887 7.907498018 7.471676172 7.81165894 7.810351558 8.126736519 53831056 AprA Sulphur adenylylsulfate reductase Desulfofaba fastidiosa superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfofaba; 7.022526265 7.221666549 7.284255572 7.090161189 7.038165926 6.860580472 108463501 nbaC Organic Remediation Aromatics Nitoaromatics Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 7.656152275 7.575538782 7.873383962 7.538264482 7.672060252 261406205 glnA Stress Nitrogen limitation Geobacillus sp. Y412MC10 7.374101453 7.383221171 7.472900749 7.027419612 7.499315006 52630054 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Legionella pneumophila subsp. pneumophila str. Philadelphia 1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella;species:Legionella pneumophila; 7.219556287 7.091360667 7.090138478 83414995 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured Termitomyces superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Termitomyces; 7.501426349 7.73806044 8.023555721 7.271249254 7.804587756 7.769027492 7.691073354 7.887272366 7.476179717 15787975 dsrA Sulphur sulfite reductase Desulfitobacterium dehalogenans superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium; 7.338828123 7.102987462 83952004 phoB Stress Phosphate limitation Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 7.610830099 7.775736031 7.576505615 7.238503726 7.89102423 7.565578423 7.725318924 7.620303407 195978904 tutFDG Organic Remediation Aromatics BTEX and related aromatics Streptococcus equi subsp. zooepidemicus MGCS10565 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus equi; 7.759281132 7.530155736 7.251241611 7.596558477 7.770460051 7.392004016 7.332261122 7.608828612 56552060 phoB Stress Phosphate limitation Zymomonas mobilis subsp. mobilis ZM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Zymomonas;species:Zymomonas mobilis; 7.162639486 7.104447348 91977732 fnr Stress Oxygen stress Rhodopseudomonas palustris BisB5 7.600519001 7.3242422 7.206875089 7.480328488 225169785 sigma_24 Stress Sigma factors Dethiobacter alkaliphilus AHT 1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Syntrophomonadaceae;genus:Dethiobacter;species:Dethiobacter alkaliphilus; 7.590670926 7.557610395 7.611280018 7.171546917 7.495570245 7.277831514 7.819482451 86138399 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 6.957146139 6.990815489 7.032991629 6.922645915 68516150 TerC Metal Resistance Tellurium Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 7.144297086 7.24260645 88807282 obgE Stress Radiation stress Synechococcus sp. WH 7805 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.476901862 7.892676969 7.685738195 7.803936016 7.929062608 8.093769452 7.919178523 7.41980756 163942030 pstC Stress Phosphate limitation Bacillus weihenstephanensis KBAB4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus weihenstephanensis; 7.122132853 7.106965854 53804857 vanA Carbon cycling Carbon degradation Others Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 7.524279176 7.633804826 7.389087567 7.614081192 7.593127188 7.551968219 7.978463551 56419211 AceA Carbon cycling Carbon degradation others Geobacillus kaustophilus HTA426 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus kaustophilus; 7.344945681 7.053336624 118474258 dnaK Stress Heat shock Campylobacter fetus subsp. fetus 82-40 7.014657227 7.367162948 218288542 pstB Stress Phosphate limitation Alicyclobacillus acidocaldarius LAA1 7.76789394 7.658410221 7.442687851 7.7986424 7.682285461 116609100 pimF Organic Remediation Aromatics Aromatic carboxylic acid Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.110000861 7.212078806 7.015825117 6.853203834 7.01543058 7.267674506 7.527986017 190687698 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 7.317562978 6.822217015 62391709 pcc Carbon cycling Carbon fixation Corynebacterium glutamicum ATCC 13032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 7.246257412 7.269828695 7.219941866 7.704392874 7.280882772 7.302449944 162447245 gyrB other category gyrB Acholeplasma laidlawii PG-8A superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Acholeplasmatales;family:Acholeplasmataceae;genus:Acholeplasma;species:Acholeplasma laidlawii; 7.01465436 7.246742623 237799991 type_III_secretion virulence secretion Pseudomonas syringae pv. oryzae str. 1_6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 7.268570984 7.400258837 7.660566668 89329743 tfdA Organic Remediation Aromatics Chlorinated aromatics Rhodoferax sp. P230 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax; 7.220749745 7.283932028 206577135 pstA Stress Phosphate limitation Klebsiella pneumoniae 342 7.628672307 7.320089152 239805958 clpC Stress Protein stress Geobacillus sp. WCH70 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 6.946471518 7.067856715 1655478 isopullulanase Carbon cycling Carbon degradation Starch Arthrobacter globiformis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.605877725 8.011985597 7.932647107 7.34902393 8.065357464 7.344396906 7.587239449 260552686 pstC Stress Phosphate limitation Lactobacillus fermentum 28-3-CHN superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus fermentum; 7.38698651 7.568924074 254514192 pstA Stress Phosphate limitation gamma proteobacterium NOR5-3 7.376881345 7.814830575 6.979609609 6.884688652 7.60282314 7.3428173 7.351820432 194011449 hly virulence hemolysin Bacillus pumilus ATCC 7061 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pumilus; 6.916053175 7.060470941 88776507 ara Carbon cycling Carbon degradation Hemicellulose Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 7.278670767 7.467333125 7.350470198 7.358424552 7.57260898 120556694 CopA Metal Resistance Copper Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 7.361995974 7.151366463 6.621803946 7.748429112 7.086640568 7.078599203 7.335156323 558805 mauAB Organic Remediation Herbicides related compound superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 7.328126744 7.768608378 7.349649258 6.994703548 212633788 cytochrome Energy process Energy process Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 7.083590169 7.144695933 7.952367504 237866974 sigma_70 Stress Sigma factors Kingella oralis ATCC 51147 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Kingella;species:Kingella oralis; 6.95740288 7.414957458 219667227 fnr Stress Oxygen stress Desulfitobacterium hafniense DCB-2 7.7958063 7.925237033 7.683873943 8.021197204 7.807604492 8.120969542 7.833097413 7.869279349 123989969 TerD Metal Resistance Tellurium Microscilla marina ATCC 23134 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Microscilla;species:Microscilla marina; 6.618383141 7.332325698 198246834 CopA Metal Resistance Copper Acidithiobacillus ferrooxidans ATCC 53993 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 7.54212568 7.206380201 7.145833586 7.862638844 256724615 endochitinase Carbon cycling Carbon degradation Chitin Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 6.571346473 7.429959757 6.928576705 6.759979713 146339474 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.396149953 6.980884937 7.739710867 254227743 endochitinase Carbon cycling Carbon degradation Chitin Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.395960992 7.336916783 89350403 ArsC Metal Resistance Arsenic Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 7.121981805 7.295303011 7.256139486 7.120550602 7.330257602 1232061 pap virulence adhesin Escherichia coli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 7.347263111 7.468786888 157698214 pstB Stress Phosphate limitation Arcobacter butzleri RM4018 7.090083922 7.158026361 218323815 oxyR Stress Oxygen stress Vibrio splendidus LGP32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 7.514016191 7.595222139 7.322239615 7.446339536 7.775247927 7.374766035 7.356761144 7.146485107 118424427 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.569243726 7.484763839 7.658989307 7.491704693 7.359761196 7.611779105 163740856 atzB Organic Remediation Herbicides related compound Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 7.171465126 6.975782465 6.518102442 7.119337291 56178584 silP Metal Resistance Silver Idiomarina loihiensis L2TR 7.215257668 6.90519459 256791783 SMR_antibiotics Antibiotic resistance transporter Slackia heliotrinireducens DSM 20476 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Slackia;species:Slackia heliotrinireducens; 7.520981997 6.998149175 94985446 sigma_70 Stress Sigma factors Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 7.043491394 7.465002231 7.129483133 7.328651205 7.516010944 7.483989664 7.641441517 109897378 phoB Stress Phosphate limitation Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 7.279231452 7.323748587 219680291 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8.219052293 7.588593649 7.517734669 7.316523459 7.443455073 7.59783501 7.947501267 7.851711925 255715245 AceB Carbon cycling Carbon degradation others Lachancea thermotolerans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Lachancea;species:Lachancea thermotolerans; 7.411448562 7.429216025 7.276418081 7.369771872 219868176 ahpC Stress Oxygen stress Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 7.418928172 7.092904676 257811905 ctsR Stress Protein stress Enterococcus casseliflavus EC20 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus casseliflavus; 7.162151643 7.206643445 259345838 cydB Stress Oxygen limitation Silicibacter sp. TrichCH4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.144782838 7.814153817 7.930199254 7.661276799 7.465516945 7.534591342 169335562 pstB Stress Phosphate limitation Anaerofustis stercorihominis DSM 17244 7.061159282 7.11840953 6.725087224 7.543799436 7.048358459 7.282437358 239817346 sigma_32 Stress Sigma factors Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 7.992197105 7.478716523 7.641327128 7.329491741 7.823142136 110667012 ArsA Metal Resistance Arsenic Haloquadratum walsbyi DSM 16790 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloquadratum;species:Haloquadratum walsbyi; 7.432465645 7.391938245 7.400876625 6.841056888 7.655931626 6.949797333 7.239496282 7.593190833 84384684 xylA Carbon cycling Carbon degradation Hemicellulose Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 6.851594035 7.092740306 7.586899364 7.282612338 7.020281452 7.161477557 269219221 hly virulence hemolysin Actinomyces sp. oral taxon 848 str. F0332 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 848; 7.001703879 6.937893828 7.291842318 7.281098567 183976688 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6.960113796 7.023583507 50084421 ahpF Stress Oxygen stress Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 7.158773729 6.893699642 152073796 cap virulence capsule Beggiatoa sp. PS superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Beggiatoa; 6.999772464 7.372592909 6.906015295 7.133582966 7.675830903 7.108906777 7.571207343 183600670 gdh Nitrogen Ammonification Providencia stuartii ATCC 25827 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia stuartii; 7.634685285 7.6437009 7.496026849 7.287795093 7.619585335 24373257 CopA Metal Resistance Copper Shewanella oneidensis MR-1 7.380008195 7.164798426 7.323272202 7.319081963 224536579 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Bacteroides cellulosilyticus DSM 14838 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 7.041730932 7.049635141 2385388 mdlB Organic Remediation Aromatics Aromatic carboxylic acid Rhodotorula graminis superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;order:Sporidiobolales;genus:Rhodotorula; 7.399507868 7.229738697 7.101851697 7.878045566 47565088 srt virulence surface protein Bacillus cereus G9241 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 6.934493605 7.10471896 6.802224021 7.484665417 71065794 exaA Organic Remediation Chlorinated solvents Psychrobacter arcticus 273-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter arcticus; 7.296072123 7.469303713 7.461432209 7.218777981 7.492848005 7.171459413 7.4110306 7.448638074 222153729 glnR Stress Nitrogen limitation Streptococcus uberis 0140J superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus uberis; 7.076089612 6.941700642 33148139 glnA Stress Nitrogen limitation Haemophilus ducreyi 35000HP 7.126716068 7.376947251 227217591 MATE_antibiotic Antibiotic resistance transporter Anaerococcus tetradius ATCC 35098 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Anaerococcus;species:Anaerococcus tetradius; 7.437943299 7.46293974 6.952646061 6.880634818 7.524417186 7.295921905 7.408471261 7.273213319 78219260 atzA Organic Remediation Herbicides related compound Desulfovibrio desulfuricans G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 7.51723626 7.32441618 7.516423641 7.311891577 7.549215292 7.488629409 7.723839193 209869110 dsrA Sulphur sulfite reductase uncultured marine bacterium 7.222663011 7.299072098 7.379148067 7.355674005 157371978 MFS_antibiotic Antibiotic resistance transporter Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 7.301084074 7.822614804 7.335015291 7.571375283 7.984082358 7.734117345 7.992742389 8.03393709 78518112 atzC Organic Remediation Herbicides related compound Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.106674076 6.813114634 7.491581212 118504069 obgE Stress Radiation stress Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 7.340431598 7.614155742 7.167065646 7.265412824 13541301 ahpF Stress Oxygen stress Thermoplasma volcanium GSS1 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermoplasmata;order:Thermoplasmatales;family:Thermoplasmataceae;genus:Thermoplasma;species:Thermoplasma volcanium; 7.639641922 8.154913132 8.084075412 7.341758137 8.018971306 7.751213739 7.598985533 119451442 gyrB other category gyrB marine gamma proteobacterium HTCC2143 7.716875251 7.560225326 7.410623979 7.807728666 7.789810106 7.825380217 209516712 phtA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 6.530044351 7.304580481 150389542 TehB Metal Resistance Tellurium Alkaliphilus metalliredigens QYMF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus metalliredigens; 7.789570814 7.305752018 7.132076908 7.393525791 77951694 nasA Nitrogen Assimilatory N reduction Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 7.902974188 7.503035655 7.33849652 7.914932707 7.721534848 7.216115947 171697535 pstB Stress Phosphate limitation Cyanothece sp. ATCC 51142 7.060763313 7.174924755 6.813250925 7.568558921 7.040925924 7.360119338 218751066 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.487122235 7.528358874 7.691755513 7.336185923 7.989536067 7.519500298 7.515710247 160879922 dsrA Sulphur sulfite reductase Clostridium phytofermentans ISDg 6.673767725 6.994478578 6.845281703 6.750857747 256831975 exoglucanase Carbon cycling Carbon degradation Cellulose Jonesia denitrificans DSM 20603 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 7.269286205 7.440588569 7.661087533 7.464886718 218355120 CueO Metal Resistance Copper Escherichia fergusonii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 7.398016847 7.215034654 149129458 catB Organic Remediation Aromatics BTEX and related aromatics Bacteroides caccae ATCC 43185 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides caccae; 7.430378655 7.520918653 7.662487417 7.780910969 56416812 gyrB other category gyrB Anaplasma marginale str. St. Maries superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales;family:Anaplasmataceae;genus:Anaplasma;species:Anaplasma marginale; 7.397453213 7.484023879 7.578483781 7.295246092 7.779410682 7.5276997 7.319951753 7.844231815 145570871 atzA Organic Remediation Herbicides related compound Pseudomonas stutzeri A1501 7.764347045 7.668444076 6.957532553 7.687629087 7.556904404 7.729887932 37678926 AceA Carbon cycling Carbon degradation others Vibrio vulnificus YJ016 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 7.060423416 7.174252277 6.98258573 7.181973519 71909514 SMR_antibiotics Antibiotic resistance transporter Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 7.235845565 7.1820676 93354865 narH Stress Oxygen limitation Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 7.4916959 7.310606467 7.24098539 7.61340812 7.852933476 7.544038135 62484846 bclA Organic Remediation Aromatics Aromatic carboxylic acid uncultured bacterium superkingdom:Bacteria; 7.088258456 7.292764269 7.725142411 7.299263068 7.869324847 7.498095478 7.632307995 187922060 pbrA Metal Resistance Lead Burkholderia phytofirmans PsJN 7.247685074 7.907430558 7.752787106 7.259614436 7.968015173 7.264630617 7.226799421 192289170 fnr Stress Oxygen stress Rhodopseudomonas palustris TIE-1 7.090885678 7.125413391 71907877 ZntA Metal Resistance Zinc Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 7.334470212 7.239957652 7.181063125 7.333865832 73696788 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.365744745 7.190630275 196258879 amyA Carbon cycling Carbon degradation Starch Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.018814039 7.282847938 77378753 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 6.962922516 7.168203651 29609332 Catechol Organic Remediation Aromatics Other aromatics Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 7.808446185 7.527419477 7.361874267 7.436027356 7.205645114 95134298 nifH Nitrogen Nitrogen fixation Desulfuromonas acetoxidans DSM 684 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Desulfuromonadaceae;genus:Desulfuromonas;species:Desulfuromonas acetoxidans; 7.276440074 7.053468346 7.295893941 6.748453739 5733104 nagI Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas alcaligenes superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.103444038 7.171393613 116494002 glnA Stress Nitrogen limitation Lactobacillus casei ATCC 334 7.73108237 7.088627788 6.868885643 7.504314271 72119196 sigma_38 Stress Sigma factors Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.480863322 6.902861658 7.106392985 7.436416756 119377813 pimF Organic Remediation Aromatics Aromatic carboxylic acid Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 7.260550082 7.173268311 7.552848712 254785264 pilin virulence pilin Teredinibacter turnerae T7901 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 7.253606551 7.176348637 6.81291339 6.91760392 7.086451205 7.071010918 6.928901443 99030585 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 7.659581132 7.810698763 7.081482257 7.511269372 7.415783396 7.503526449 145205532 aclB Carbon cycling Carbon fixation Prosthecochloris vibrioformis DSM 265 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeovibrioides; 6.774922893 7.153821706 71555754 CopA Metal Resistance Copper Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 7.362776995 7.405112801 7.028704074 6.907013066 225374689 glnA Stress Nitrogen limitation Roseburia inulinivorans DSM 16841 6.971816405 6.802389155 116646290 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia cenocepacia HI2424 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 8.317468123 8.051150192 8.38743376 8.399029392 8.421282094 8.480030299 8.338604192 8.19311148 77387224 alkK Organic Remediation Others Rhodobacter sphaeroides 2.4.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 7.208506126 7.67324839 7.248126879 7.201989916 7.784208946 85708493 pstB Stress Phosphate limitation Erythrobacter sp. NAP1 7.30273807 7.602077781 68347206 fnr Stress Oxygen stress Pseudomonas fluorescens Pf-5 7.095992227 7.322379942 7.397794379 7.773391314 8.025015458 7.728050515 7.335284097 7.668874669 116743206 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6.528250898 7.484676654 194684541 oxyR Stress Oxygen stress Proteus mirabilis HI4320 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 6.883819401 7.09413685 262280534 phoB Stress Phosphate limitation Acinetobacter calcoaceticus RUH2202 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter calcoaceticus; 7.02032945 7.595711234 169759232 vdh Carbon cycling Carbon degradation Others Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.067070688 7.858163574 90325009 CadA Metal Resistance Cadmium Photobacterium profundum 3TCK 7.190108613 7.720171813 7.321756234 7.303046651 7.801906904 7.2325265 7.205969654 7.365184002 154486351 gyrB other category gyrB Bifidobacterium adolescentis L2-32 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium adolescentis; 7.740396728 7.858997515 7.679342153 7.916685931 7.263309772 7.417567787 218514176 AceB Carbon cycling Carbon degradation others Rhizobium etli 8C-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 6.916490269 7.467728417 91698043 pimF Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 7.506389909 7.27467801 167838533 katE Stress Oxygen stress Burkholderia thailandensis MSMB43 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 7.30296412 7.591120294 7.857991771 7.459729383 7.69555425 7.369217604 108771900 pstC Stress Phosphate limitation Mycobacterium sp. MCS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.706282736 7.998636175 7.819440526 7.840037448 7.785357097 42524021 norB Nitrogen Denitrification Bdellovibrio bacteriovorus HD100 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 7.127561927 7.237388043 7.320366344 7.16599124 82791419 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 7.025571089 7.021930383 116612264 TerC Metal Resistance Tellurium Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.48682527 7.590415686 7.420590907 7.651834065 8.38105124 7.269861741 7.375551922 221532496 rd Organic Remediation Chlorinated solvents Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 6.909846081 7.162062596 146306240 Mex Antibiotic resistance transporter Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 7.447590729 7.195011575 27922980 nitA Organic Remediation Aromatics Other aromatics Aspergillus oryzae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 7.843919887 7.191648275 7.694463177 148256204 nmoA Organic Remediation Aromatics Nitoaromatics Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 6.983197069 7.465650832 6.836618916 6.84156566 7.503559474 7.258231291 6.982419084 7.176321195 157317949 ArsC Metal Resistance Arsenic Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 7.063016841 7.065796386 110825138 CDH Carbon cycling Carbon degradation Cellulose Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7.269628007 7.605564566 7.046562685 7.296171133 7.578918036 7.081406348 7.370114956 7.452486312 12381893 katA Stress Oxygen stress Bacillus subtilis 6.961097178 7.298582098 261373962 gyrB other category gyrB Geobacillus sp. Y412MC61 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.30239885 7.240194628 7.347730878 7.687376102 7.588276457 7.463623323 7.276852426 112463999 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.823910846 8.221136008 8.756744185 7.62619405 7.861412109 8.197231888 7.752799338 67903210 pheA Organic Remediation Aromatics Other aromatics Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.893338685 7.719437967 7.34972751 8.132072045 7.763845644 7.538700471 7.580612062 33385649 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 6.777183115 6.920921843 160917443 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.653503089 7.740893401 7.796652993 7.563524953 187728904 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 7.395119561 7.864624945 7.825521022 7.349464939 50083301 gyrB other category gyrB Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 7.109501223 6.812779038 157961469 cytochrome Energy process Energy process Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 7.144440567 6.960300468 72123250 fnr Stress Oxygen stress Ralstonia eutropha JMP134 6.683187178 6.963530917 6.679758863 7.125534413 33573811 bphA Organic Remediation Aromatics Polycyclic aromatics Bordetella parapertussis 7.192140937 7.866810629 7.295638999 7.688463171 124516345 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Leptospirillum sp. Group II UBA superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 7.261725378 6.969718289 7.143784871 7.005081898 7.792445368 119462253 pstB Stress Phosphate limitation Nodularia spumigena CCY9414 7.109441366 7.009924652 159030986 NiR Nitrogen Assimilatory N reduction Microcystis aeruginosa PCC 7806 6.653325612 7.055608374 118591791 glnA Stress Nitrogen limitation Stappia aggregata IAM 12614 7.196321229 7.096516927 7.109371753 7.636868936 7.255601167 7.249365028 7.365024323 116743202 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.045101 7.339407097 6.995311502 6.786630214 146350794 pmoA Carbon cycling Methane Methane oxidation Methylococcaceae bacterium IT-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae; 6.872304172 7.445613362 62114862 holin_type_3 Bacteria phage LYSIS Aeromonas phage 31 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.336820291 7.114529358 7.498782227 7.119698612 91799151 pstB Stress Phosphate limitation Nitrobacter hamburgensis X14 7.460518142 7.775785262 8.033687323 7.515007276 7.679406989 260536613 fnr Stress Oxygen stress Prevotella veroralis F0319 7.485578427 7.474319595 7.56589077 7.672933743 110681866 endoglucanase Carbon cycling Carbon degradation Cellulose Rhizobium leguminosarum bv. trifolii superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.77638157 7.761490657 7.388183087 7.277655836 7.426961181 7.669185776 68055216 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Exiguobacterium sibiricum 255-15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 7.452082504 7.51461162 6.893443445 7.804694783 7.34343403 7.193246918 7.206226081 115401390 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.483667006 7.352098678 119358300 CopA Metal Resistance Copper Chlorobium phaeobacteroides DSM 266 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 9.373100854 9.849363335 8.900840206 9.841518823 9.640771732 9.417437363 47779223 helicase_family_4 Bacteria phage REPLICATION Acinetobacter phage 133 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 6.954844678 7.194096385 283572624 sigma_24 Stress Sigma factors Desulfovibrio sp. FW1012B superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 6.943772417 7.481757378 7.139993118 7.578205177 7.253141261 7.686371279 7.592661954 70988703 amyA Carbon cycling Carbon degradation Starch Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 6.80915991 7.188013931 7.027950323 6.684649691 7.418601481 7.098574293 7.046500655 84517059 dehH109 Organic Remediation Chlorinated solvents Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 7.343217685 7.852566331 7.933618798 7.632733356 7.967295407 7.526076716 7.912988159 7.748295209 118578560 sigma_32 Stress Sigma factors Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 7.195900672 7.241745906 6.881314377 7.655794176 7.188789899 7.345398146 7.48312606 113460780 TerZ Metal Resistance Tellurium Haemophilus somnus 129PT superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Histophilus;species:Histophilus somni; 8.003133826 8.053301354 8.347961533 7.602194545 8.637312957 7.614357433 7.809195827 8.211358783 225905990 dsrA Sulphur sulfite reductase uncultured prokaryote 7.092894251 6.956141541 116496526 gyrB other category gyrB uncultured bacterium superkingdom:Bacteria; 7.752316162 7.888464972 7.432085922 7.384671458 7.392143454 7.31271986 8.071785079 251782470 pstB Stress Phosphate limitation Streptococcus dysgalactiae subsp. equisimilis GGS_124 7.050328829 6.986891086 148654372 sigma_70 Stress Sigma factors Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 7.938064869 8.139134521 8.53706524 7.467185763 8.571629292 7.888973968 8.179582373 8.470732279 151576229 phtA Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 7.477914128 7.778995796 7.764717546 7.615493511 111020357 arsB Metal Resistance Arsenic Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7.109055349 7.381110013 221534292 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 7.955455383 7.846506103 7.628886555 7.371466475 7.832924389 28542621 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.078533547 7.57746138 99081791 fnr Stress Oxygen stress Silicibacter sp. TM1040 7.703088551 7.621921632 7.920558437 7.492406367 7.648230299 7.908627088 94312876 fnr Stress Oxygen stress Ralstonia metallidurans CH34 7.405888407 7.002362564 7.438695188 7.387550691 146402774 fnr Stress Oxygen stress Acidiphilium cryptum JF-5 7.065603888 7.030839258 6.819504388 6.563010564 7.59884492 6.948333987 7.017703063 90205840 nhh Organic Remediation Aromatics Nitoaromatics Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 7.651728642 7.107139074 7.046452637 7.499284533 7.862622719 7.538714658 7.580414638 7.19693429 163669901 sigma_70 Stress Sigma factors Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 7.863378927 7.515513807 162283427 alkB Organic Remediation Other Hydrocarbons Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 7.256779775 7.526668342 2622654 ZntA Metal Resistance Zinc Methanothermobacter thermautotrophicus str. Delta H superkingdom:Archaea;phylum:Euryarchaeota;class:Methanobacteria;order:Methanobacteriales;family:Methanobacteriaceae;genus:Methanothermobacter;species:Methanothermobacter thermautotrophicus; 7.301086203 7.395314065 4572568 nplT Carbon cycling Carbon degradation Starch Alicyclobacillus acidocaldarius 6.960013155 7.102699144 6.884862032 7.687402459 262087133 pstC Stress Phosphate limitation Gordonia bronchialis DSM 43247 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 7.138431471 7.295021957 257462223 ahpF Stress Oxygen stress Fusobacterium sp. D12 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteria;order:Fusobacteriales;family:Fusobacteriaceae;genus:Fusobacterium; 7.260715908 7.032680526 156840899 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Vanderwaltozyma polyspora DSM 70294 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Vanderwaltozyma;species:Vanderwaltozyma polyspora; 6.942170722 7.018834399 222114542 glnR Stress Nitrogen limitation Streptococcus uberis 0140J superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus uberis; 7.205217113 6.978535538 6.828367599 7.378436347 72496158 ahpF Stress Oxygen stress Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus saprophyticus; 7.529303168 7.708495271 7.999189571 7.226720899 8.016247183 7.595010585 7.862206688 7.441795166 255264338 ahpC Stress Oxygen stress Thalassiobium sp. R2A62 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Thalassobium; 7.721592939 7.565621408 22796218 nirS Nitrogen Denitrification uncultured bacterium pA5 superkingdom:Bacteria; 7.156104574 7.122185246 147919764 bco Organic Remediation Aromatics Aromatic carboxylic acid uncultured methanogenic archaeon RC-I superkingdom:Archaea;phylum:Euryarchaeota; 7.786491612 7.975961396 120555046 pimF Organic Remediation Aromatics Aromatic carboxylic acid Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 7.410706632 7.599866851 7.417455036 7.778889498 87281195 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.385264764 7.409319158 7.588906873 7.601311826 7.662813675 7.234195562 7.861409414 146397305 Arylest Organic Remediation Aromatics Other aromatics Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 7.393964265 7.894750727 7.638697634 7.480356209 7.56935605 256760448 narH Stress Oxygen limitation Thiomonas intermedia K12 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas;species:Thiomonas intermedia; 7.528313993 7.512449992 7.799248458 7.255691057 8.342874363 7.548473987 7.272143939 161330886 pulA Carbon cycling Carbon degradation Starch Shewanella benthica KT99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella benthica; 7.15042745 6.948494612 160915304 obgE Stress Radiation stress Eubacterium dolichum DSM 3991 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichi;order:Erysipelotrichales;family:Erysipelotrichaceae;species:Eubacterium dolichum; 7.094427052 7.08086754 46389797 mcrA Carbon cycling Methane Methane production uncultured archaeon superkingdom:Archaea; 7.168366861 7.184506897 163758372 oxyR Stress Oxygen stress Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 7.546993188 7.265241171 7.079461126 7.453531439 7.428889174 7.374228142 7.092838014 7.59693223 270278858 obgE Stress Radiation stress Streptococcus sp. M143 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 7.231029235 7.160005512 62289349 CopA Metal Resistance Copper Brucella abortus bv. 1 str. 9-941 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Brucella;species:Brucella abortus; 6.813150169 7.52218748 7.199980318 7.06168714 266628875 pstB Stress Phosphate limitation Caulobacter segnis ATCC 21756 7.297700349 7.587994658 7.172211911 7.153164931 7.699183587 7.53708412 7.412401864 7.77207548 15889423 glnA Stress Nitrogen limitation Agrobacterium tumefaciens str. C58 7.185853761 7.20379182 7.059511646 7.602541073 7.379713061 7.100125388 119948470 amyA Carbon cycling Carbon degradation Starch Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 7.45309628 7.368555129 7.512460536 7.572976668 758210 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia cepacia 7.444560922 7.38128744 7.304469273 7.600625694 7.652359427 7.167511266 7.676747461 269096341 hly virulence hemolysin Sanguibacter keddieii DSM 10542 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Sanguibacteraceae;genus:Sanguibacter;species:Sanguibacter keddieii; 7.295986528 7.316284086 7.167404741 7.585109725 7.47516922 7.518722573 188533130 sigma_24 Stress Sigma factors Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 6.844380297 7.284607193 6.821150309 7.446304597 7.017813404 6.898525871 10639270 ahpF Stress Oxygen stress Thermoplasma acidophilum superkingdom:Archaea;phylum:Euryarchaeota;class:Thermoplasmata;order:Thermoplasmatales;family:Thermoplasmataceae;genus:Thermoplasma; 7.308298583 7.341316192 7.006836177 6.924482711 7.488968472 7.6925692 7.424758878 7.572494253 110668980 AceA Carbon cycling Carbon degradation others Haloquadratum walsbyi DSM 16790 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloquadratum;species:Haloquadratum walsbyi; 7.448693193 7.308388697 118434846 ara Carbon cycling Carbon degradation Hemicellulose Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 7.172378362 7.203986674 6.938415874 7.19960926 163741152 pimF Organic Remediation Aromatics Aromatic carboxylic acid Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 6.955818048 7.109536238 6.624552055 7.454439527 163811609 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.159175538 7.240466463 7.074894732 6.772847942 7.604933978 40218014 phenol_oxidase Carbon cycling Carbon degradation Lignin Ganoderma lucidum superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Ganodermataceae;genus:Ganoderma; 7.487389384 7.871175505 7.519573069 7.937827921 7.777154387 7.770428333 7.894000754 68054004 amyA Carbon cycling Carbon degradation Starch Exiguobacterium sibiricum 255-15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 7.096131217 7.174346684 7.198119121 7.152704301 163846858 obgE Stress Radiation stress Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 7.293741546 7.588250681 7.635359324 7.648994084 7.798202536 17220533 rd Organic Remediation Chlorinated solvents Desulfitobacterium dehalogenans 7.005608595 7.292257053 7.41643751 7.714753573 56314214 pstC Stress Phosphate limitation Aromatoleum aromaticum EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 7.048095143 7.485927635 7.031709258 7.539259996 260418101 pstC Stress Phosphate limitation Silicibacter lacuscaerulensis ITI-1157 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria lacuscaerulensis; 7.405260649 8.151873949 8.155978133 7.986896184 7.280513599 7.487703419 7.985737019 34103393 pimF Organic Remediation Aromatics Aromatic carboxylic acid Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 7.819627502 7.932247229 7.334490906 7.209489481 7.743868506 7.191834737 7.471024365 228940140 Tet Antibiotic resistance other Bacillus thuringiensis serovar berliner ATCC 10792 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus thuringiensis; 7.368626243 6.776978126 7.039258055 6.878288758 163761275 pstB Stress Phosphate limitation Hoeflea phototrophica DFL-43 6.934296643 7.408606826 254355201 grpE Stress Heat shock Legionella drancourtii LLAP12 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella;species:Legionella drancourtii; 7.393357074 7.294292044 227529066 obgE Stress Radiation stress Lactobacillus vaginalis ATCC 49540 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus vaginalis; 7.159202295 7.259162842 6.813717301 7.122091207 7.49766066 6.942746786 7.080520075 7.162360648 39575891 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Bdellovibrio bacteriovorus HD100 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 6.858875084 7.271343521 7.342226404 159139492 cspA Stress Cold shock Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.340651004 7.425842029 24379277 sigma_70 Stress Sigma factors Streptococcus mutans UA159 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus mutans; 6.970902501 7.137283497 6.683517717 7.242622554 219849686 carA Organic Remediation Aromatics Heterocyclic aromatics Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 6.970652341 7.496266894 50543680 tfdA Organic Remediation Aromatics Chlorinated aromatics Yarrowia lipolytica superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Dipodascaceae;genus:Yarrowia;species:Yarrowia lipolytica; 7.245446797 7.043416837 6.896558746 7.426895765 213980611 amyA Carbon cycling Carbon degradation Starch Salmonella enterica subsp. enterica serovar Typhi str. AG3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 6.992502804 7.687408902 221086024 Catechol Organic Remediation Aromatics Other aromatics Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 7.67959571 7.496811703 7.128817282 7.526168523 7.686894915 7.539647267 7.428309969 148499066 fnr Stress Oxygen stress Sphingomonas wittichii RW1 7.218476038 7.247560195 7.485365392 7.216108376 262297521 ahpC Stress Oxygen stress Acinetobacter radioresistens SH164 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter radioresistens; 7.033084889 7.009121952 167461598 hly virulence hemolysin Paenibacillus larvae subsp. larvae BRL-230010 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus larvae; 6.599019941 7.559041379 190688185 sigma_32 Stress Sigma factors Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 6.892436323 7.518840175 214043530 SMR_antibiotics Antibiotic resistance transporter Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.192986566 7.210699589 15607004 pstA Stress Phosphate limitation Aquifex aeolicus VF5 7.163257057 7.302440706 6.817460458 7.040511649 91227290 oxyR Stress Oxygen stress Vibrio alginolyticus 12G01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 7.13836313 7.598594357 189185265 pstA Stress Phosphate limitation Methylacidiphilum infernorum V4 6.985616703 7.031588926 67541054 cellobiase Carbon cycling Carbon degradation Cellulose Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 6.993068741 6.804981008 6.702530439 7.240846883 225018167 sigma_70 Stress Sigma factors Clostridium methylpentosum DSM 5476 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium methylpentosum; 7.320035502 7.60041377 7.908447968 8.057711897 7.897565576 8.011908769 7.825895502 134103859 AceB Carbon cycling Carbon degradation others Sclerotinia sclerotiorum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia; 6.937674869 6.926754823 56551861 MFS_antibiotic Antibiotic resistance transporter Zymomonas mobilis subsp. mobilis ZM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Zymomonas;species:Zymomonas mobilis; 8.183178531 7.643754957 7.582414953 8.138964056 7.863966002 7.437934623 7.610275494 120593982 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 6.914603549 7.442800363 7.390608207 7.092301572 7.337109337 73696974 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.163159556 6.975168861 6.553432211 7.336271323 6.985128162 6.965297389 255304911 katE Stress Oxygen stress Acinetobacter radioresistens SK82 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter radioresistens; 7.299725309 7.168132751 6.787913472 7.394762206 222147128 cspA Stress Cold shock Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 6.6182107 7.560365659 145248171 alkJ Organic Remediation Other Hydrocarbons Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.109299176 7.103857521 6.508240449 6.826234101 7.53272394 219867666 nrfA Nitrogen Dissimilatory N reduction Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 7.616758465 7.341692156 206741747 atzA Organic Remediation Herbicides related compound Thermodesulfovibrio yellowstonii DSM 11347 superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Thermodesulfovibrio;species:Thermodesulfovibrio yellowstonii; 7.055484496 7.41355781 144943649 TerC Metal Resistance Tellurium Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 7.615948884 7.638110955 7.677306995 7.863395088 7.980157345 7.76266056 7.715341322 7.67047291 67154952 amyA Carbon cycling Carbon degradation Starch Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 7.466966168 7.503933601 7.458895733 7.611162671 126032283 endochitinase Carbon cycling Carbon degradation Chitin Hypocrea jecorina superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 7.178435039 7.153090932 77811686 dmsA Organic Remediation Others Shewanella putrefaciens CN-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella putrefaciens; 7.286214612 7.379115944 133915200 ppk Phosphorus Phosphorus utilization Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 7.358580553 7.368290848 7.27645932 7.728893626 224965930 pstC Stress Phosphate limitation Erwinia pyrifoliae Ep1/96 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia pyrifoliae; 8.086411153 7.981005381 8.080579481 7.241091251 7.566102835 7.868629096 38259442 silC Metal Resistance Silver Serratia marcescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 7.647344798 7.411783684 7.666161039 118663312 xylanase Carbon cycling Carbon degradation Hemicellulose Clostridium cellulolyticum H10 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium cellulolyticum; 7.403297843 6.982962709 6.875498525 7.327584772 7.217107467 7.106984609 242129521 gyrB other category gyrB Dickeya dadantii Ech703 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 7.234363777 7.490859297 7.099923207 7.219965474 7.668230467 7.802122513 7.70715088 7.390463151 75703271 fnr Stress Oxygen stress Anabaena variabilis ATCC 29413 7.034636403 6.903501725 39935146 fnr Stress Oxygen stress Rhodopseudomonas palustris CGA009 6.965751348 7.438444963 7.281878627 6.744861417 7.72378183 156861660 ChrA Metal Resistance Chromium Bacteroides uniformis ATCC 8492 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides uniformis; 7.263811026 7.2272169 7.008192984 7.041860157 7.552617979 7.090131418 6.983168203 120323933 aclB Carbon cycling Carbon fixation Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 7.083674262 7.388280642 7.128961058 7.036768396 283851053 sigma_70 Stress Sigma factors Desulfovibrio sp. FW1012B superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 7.27901468 7.75626719 7.577984936 7.585990492 7.354363612 7.370423235 157849041 pstA Stress Phosphate limitation Shewanella pealeana ATCC 700345 7.05561397 7.361964605 7.153437744 6.93447737 7.436614697 7.022668345 6.988380039 7.388482019 196205820 CDD Organic Remediation Aromatics Other aromatics Cyanothece sp. PCC 8802 7.006063641 6.881686858 91802638 aoxB Metal Resistance Arsenic Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 7.186244124 7.158744649 6.873221129 7.714986164 197339167 mannanase Carbon cycling Carbon degradation Hemicellulose Streptomyces sp. SPB74 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7.348623868 7.331848073 7.320902454 7.383666169 95930284 sigma_38 Stress Sigma factors Desulfuromonas acetoxidans DSM 684 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Desulfuromonadaceae;genus:Desulfuromonas;species:Desulfuromonas acetoxidans; 7.252606593 7.55699207 241771662 sigma_24 Stress Sigma factors Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 7.041388288 7.154462331 45593188 gyrB other category gyrB Pelobacter carbinolicus DSM 2380 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter carbinolicus; 6.957136719 7.115476721 242280929 pstA Stress Phosphate limitation Desulfovibrio salexigens DSM 2638 7.409847503 7.578704583 7.001349535 7.466959761 7.640033268 7.347228079 31747674 nif Bioleaching Nitrogen Leptospirillum ferrooxidans 7.097506435 6.917523204 6.877990773 7.108479987 149810912 obgE Stress Radiation stress Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.1591333 7.271938719 7.020435495 7.26328638 7.584803289 33414625 helicase_family_4 Bacteria phage REPLICATION Bacteriophage Aeh1 7.373650495 7.864419212 7.163285162 7.926441459 7.964120152 8.181545394 7.78715962 171691014 nagG Organic Remediation Aromatics Aromatic carboxylic acid Podospora anserina superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 7.180417067 6.673341594 54296650 pilin virulence pilin Legionella pneumophila str. Paris superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella;species:Legionella pneumophila; 7.180587634 7.321446026 268317698 sigma_24 Stress Sigma factors Rhodothermus marinus DSM 4252 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 7.368290906 7.427213705 7.435879556 7.180542115 177839905 amyA Carbon cycling Carbon degradation Starch Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 7.799560817 7.247878465 7.205441132 7.551242775 7.432044835 7.441214312 7.381624722 146324479 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 7.400439631 7.211976539 6.938921427 7.243857083 241461640 fnr Stress Oxygen stress Allochromatium vinosum DSM 180 6.825547468 7.550740728 7.504805064 6.712897607 7.89335842 7.071977857 7.095875499 114226933 ZntA Metal Resistance Zinc Alkalilimnicola ehrlichei MLHE-1 7.412558458 7.483943879 7.131737865 6.954872497 7.535493161 7.252348054 7.22316165 7.82745819 262401951 groEL Stress Heat shock Vibrio sp. RC586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.313495431 7.021969001 154161980 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 7.463049288 7.308292285 7.465917675 7.799082796 78061482 atzB Organic Remediation Herbicides related compound Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.150694069 7.022990702 6.941257052 7.485803612 7.350583226 7.287454079 56551609 ppx Phosphorus Phosphorus utilization Zymomonas mobilis subsp. mobilis ZM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Zymomonas;species:Zymomonas mobilis; 7.11591536 7.337031029 257455725 pstS Stress Phosphate limitation Enhydrobacter aerosaccus SK60 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Enhydrobacter;species:Enhydrobacter aerosaccus; 7.01122081 6.863593709 7.495775312 260937509 oxyR Stress Oxygen stress Vibrio orientalis CIP 102891 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 6.947089475 7.376379314 6.625271043 7.351681157 189356630 dmsA Organic Remediation Others Escherichia coli O157:H7 str. EC4401 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 6.884076777 7.163520026 194454754 ahpF Stress Oxygen stress Lactobacillus reuteri 100-23 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus reuteri; 7.041147102 7.213587325 22776127 pstB Stress Phosphate limitation Oceanobacillus iheyensis HTE831 7.083741793 6.988495522 158334322 hrcA Stress Heat shock Acaryochloris marina MBIC11017 7.773567412 7.724530863 7.252784138 7.042078864 15838132 ahpF Stress Oxygen stress Xylella fastidiosa 9a5c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xylella;species:Xylella fastidiosa; 7.392478974 7.735659559 7.936376501 7.790256808 7.453004275 7.467515063 7.901348856 140713808 nasA Nitrogen Assimilatory N reduction uncultured marine bacterium superkingdom:Bacteria; 6.866844247 7.073249374 256828085 narI Stress Oxygen limitation Desulfomicrobium baculatum DSM 4028 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfomicrobiaceae;genus:Desulfomicrobium;species:Desulfomicrobium baculatum; 7.668560823 7.44859007 7.54164272 7.355721916 7.682715691 7.824469359 7.392016797 119482658 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 7.055559556 7.296882357 7.403580918 6.809213632 7.034294261 7.218711933 7.583399757 184193379 nitA Organic Remediation Aromatics Other aromatics Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.19458343 7.337260957 6.78861184 7.058145088 7.336551026 7.00739614 6.691699571 120577985 ara_fungi Carbon cycling Carbon degradation Hemicellulose Penicillium capsulatum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 7.568113845 7.44522013 7.60099389 7.526859489 7.251489691 7.776295106 58254818 mer Metal Resistance Mercury Lactobacillus acidophilus NCFM superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus acidophilus; 6.917960234 6.937639564 6.564592318 7.352527586 6.602426698 6.940022372 1652838 sigma_70 Stress Sigma factors Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 7.585040517 7.582683642 7.789435699 7.709076829 7.870283692 7.707560999 7.721281453 66356039 glnA Stress Nitrogen limitation Symploca atlantica PCC 8002 6.631986059 7.204006998 187426375 sigma_24 Stress Sigma factors Akkermansia muciniphila ATCC BAA-835 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Akkermansia;species:Akkermansia muciniphila; 7.727663432 7.275719012 7.172255401 7.170638508 7.397256059 211592853 nitA Organic Remediation Aromatics Other aromatics Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 6.71883928 7.123038256 268163197 oxyR Stress Oxygen stress Photobacterium damselae subsp. damselae CIP 102761 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium damselae; 6.912157874 7.410447217 7.775559871 7.710267565 8.081799096 116804546 nasA Nitrogen Assimilatory N reduction uncultured prokaryote 7.900810762 8.369887205 8.49839728 8.208984003 7.90842402 8.044430528 8.124473198 8.134848762 27352211 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.277455171 7.597931784 20986705 exoglucanase Carbon cycling Carbon degradation Cellulose Talaromyces emersonii superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces; 7.000459709 6.974685571 36783679 glnA Stress Nitrogen limitation Photorhabdus luminescens subsp. laumondii TTO1 7.097655379 6.824965596 6.636598249 7.538675967 119476346 pstB Stress Phosphate limitation marine gamma proteobacterium HTCC2143 6.864420465 6.920351192 148837722 iuc virulence aerobactin Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 7.405285006 7.220814687 7.681952037 7.018051883 121714807 ChrA Metal Resistance Chromium Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7.198317472 7.032494492 7.256226437 7.444881961 7.216530166 7.082979023 187724682 tfdA Organic Remediation Aromatics Chlorinated aromatics Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 7.038794927 7.703484387 7.095402124 6.91768384 7.943202043 76874226 sigma_38 Stress Sigma factors Pseudoalteromonas haloplanktis TAC125 7.518337964 7.561166161 7.081641614 7.654101042 7.744971533 7.581929623 7.476430774 158439348 tutFDG Organic Remediation Aromatics BTEX and related aromatics Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 7.082627026 6.936289544 142190 dsrA Sulphur sulfite reductase Archaeoglobus fulgidus 7.397178967 7.468362535 7.711357661 7.370179497 7.789942671 212541757 endoglucanase Carbon cycling Carbon degradation Cellulose Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.288113673 7.733686333 7.011536166 6.805887055 110624483 gyrB other category gyrB Shewanella affinis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 7.366586399 7.196282015 7.446511616 7.267099855 170940280 glnA Stress Nitrogen limitation Podospora anserina 7.236802047 7.132868524 6.572656141 7.232956865 118424400 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.096466718 7.408453788 7.095876087 7.114660035 7.529704303 7.254515128 7.333490308 58536437 cydA Stress Oxygen limitation Wolbachia endosymbiont of Drosophila simulans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales;family:Rickettsiaceae;genus:Wolbachia; 7.632225138 7.260624568 7.155420654 7.13210134 7.181649132 7.367469663 7.510823112 256653814 phoB Stress Phosphate limitation Acetobacter pasteurianus IFO 3283-12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pasteurianus; 7.182253393 7.379447966 6.937363967 7.522112303 7.456967787 7.215363648 99037959 glnA Stress Nitrogen limitation Ruegeria sp. TM1040 7.708299896 7.263457909 222153838 clpC Stress Protein stress Streptococcus uberis 0140J superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus uberis; 6.819346577 6.696200374 511474 czcC Metal Resistance "Cadmium,Cobalt,Zinc" superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella; 7.212291952 7.291835207 6.970883732 7.563901941 121555473 obgE Stress Radiation stress Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 7.436446659 7.302834613 14275996 pheA Organic Remediation Aromatics Other aromatics uncultured microorganism PCRTD03 superkingdom:Bacteria; 7.62320285 7.546482922 7.586871242 7.797875414 7.967318243 7.540886696 7.721006363 7.758381681 3372194 nifH Nitrogen Nitrogen fixation unidentified bacterium superkingdom:Bacteria; 6.82267135 7.334262811 154156095 sigma_32 Stress Sigma factors Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 7.413292587 7.421576218 7.663614062 7.704468272 7.875643345 7.669009095 8.241698959 209874334 AceA Carbon cycling Carbon degradation others Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 7.080358491 7.25210213 7.234838071 7.438759182 217329944 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 6.795310822 7.20374096 6.92072466 6.508296457 7.575140513 78036584 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Xanthomonas campestris pv. vesicatoria str. 85-10 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas euvesicatoria; 7.980527441 7.764562403 7.691190491 8.387493196 7.926763982 8.226576864 8.097208869 7.8456182 94968827 sigma_24 Stress Sigma factors Candidatus Koribacter versatilis Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 7.113994255 7.466298065 56416382 grpE Stress Heat shock Anaplasma marginale str. St. Maries superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales;family:Anaplasmataceae;genus:Anaplasma;species:Anaplasma marginale; 6.883104997 6.911400622 257437579 pstB Stress Phosphate limitation Faecalibacterium prausnitzii A2-165 7.728943834 7.675742077 8.203734585 7.914605552 7.894661044 8.206498475 8.056620378 21648290 narI Stress Oxygen limitation Chlorobium tepidum TLS superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 7.725296209 7.981989028 7.503277842 7.978816249 8.038373077 7.586881883 7.807459722 7.553674019 27227705 xylanase Carbon cycling Carbon degradation Hemicellulose Prevotella bryantii superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella; 6.725223187 7.267867814 156973250 arcB Stress Oxygen limitation Vibrio harveyi ATCC BAA-1116 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 7.221040165 7.219422092 7.073806051 7.053324652 115587920 pilin virulence pilin Pseudomonas aeruginosa UCBPP-PA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 7.122175747 7.235739699 7.118361821 6.963415344 126008053 aclB Carbon cycling Carbon fixation Ferroplasma acidarmanus fer1 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermoplasmata;order:Thermoplasmatales;family:Ferroplasmaceae;genus:Ferroplasma;species:Ferroplasma acidarmanus; 7.66178099 7.179075437 157681309 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bacillus pumilus SAFR-032 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pumilus; 7.803136812 8.119916772 8.474901083 8.057650586 7.815136682 8.115834275 8.320972597 237807340 ahpC Stress Oxygen stress Tolumonas auensis DSM 9187 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Tolumonas;species:Tolumonas auensis; 7.330215713 7.696016621 6.984171242 7.328492304 7.357662491 21309845 gyrB other category gyrB Peanut witches'-broom phytoplasma superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Acholeplasmatales;family:Acholeplasmataceae;genus:Candidatus Phytoplasma; 6.956377732 7.369445676 7.103003495 7.526788251 112463111 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.419204911 7.575469763 7.623604521 7.274714322 7.398166224 7.534452539 7.700619616 85699296 oxyR Stress Oxygen stress Nitrobacter sp. Nb-311A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter; 6.646195858 7.133189474 6.998012856 6.853953574 260613553 pstA Stress Phosphate limitation Vibrio furnissii CIP 102972 7.310256061 7.599005376 7.208367178 7.119274262 7.742542705 7.311301371 7.399847989 144942856 pcc Carbon cycling Carbon fixation Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 7.300281637 7.336453989 7.087468414 7.067032275 7.628775987 7.585624476 7.283341724 7.901995736 254481517 limEH Carbon cycling Carbon degradation Others marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.423079806 7.238243099 7.000437603 7.366373009 149822991 oxyR Stress Oxygen stress Limnobacter sp. MED105 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 6.8814014 6.955981309 6.820184794 7.348485828 157411538 napA Nitrogen Dissimilatory N reduction uncultured prokaryote 7.27157286 7.187815807 153796187 tutFDG Organic Remediation Aromatics BTEX and related aromatics Ruminococcus gnavus ATCC 29149 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus gnavus; 6.876507838 7.150091163 89092388 ahpF Stress Oxygen stress Oceanospirillum sp. MED92 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Neptuniibacter; 7.082204268 7.49652478 7.586976529 7.204230993 7.228151427 7.404626697 159031049 nitro Organic Remediation Others Microcystis aeruginosa PCC 7806 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 8.002130702 8.280005822 8.082492182 7.774402492 7.572681122 7.473340222 7.731401881 208973050 gyrB other category gyrB Paenibacillus lautus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.156778085 6.786391514 6.750507801 7.240809404 227079989 pstB Stress Phosphate limitation Corynebacterium lipophiloflavum DSM 44291 7.387002652 7.580003439 7.727301466 7.438286549 7.57076436 7.649521497 7.899189343 89241792 amyA Carbon cycling Carbon degradation Starch Actinoplanes sp. SE50/110 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 7.595960092 7.476450023 7.471365284 7.771610793 7.648883709 7.585267519 7.375621614 7.503471135 269835191 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Vibrio harveyi 1DA3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 6.996512647 7.330881687 7.0657967 6.985105498 7.058614539 7.014343188 7.022187654 118758547 vanA Carbon cycling Carbon degradation Others Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 7.418902164 7.517156792 7.421208822 7.344710978 7.123723527 7.000389116 7.37778729 85724083 silC Metal Resistance Silver Syntrophus aciditrophicus SB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Syntrophus;species:Syntrophus aciditrophicus; 7.260837815 7.344416486 6.873251934 7.361673545 7.52310052 7.103161173 7.074181274 7.439027088 46850256 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.397678179 6.806458599 88820723 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Pseudoalteromonas tunicata D2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas tunicata; 7.117581611 7.426471035 7.351195112 7.208600315 7.182503921 220931438 fnr Stress Oxygen stress Halothermothrix orenii H 168 7.201214808 7.499815286 7.531424161 7.143797921 7.414663028 8.280316575 110623048 arsB Metal Resistance Arsenic Zimmermannella faecalis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Pseudoclavibacter; 7.28940382 7.268939822 268608710 mannanase Carbon cycling Carbon degradation Hemicellulose Ruminococcus flavefaciens FD-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus flavefaciens; 7.005147859 7.321867856 7.214094031 7.176991936 7.55794412 28853001 phn Organic Remediation Herbicides related compound Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 7.345622857 7.486441645 7.402232446 7.130391469 7.208324822 7.212898361 7.742169457 47554101 Al Metal Resistance Aluminum Bacillus cereus G9241 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 7.487937512 7.508677741 187717310 silC Metal Resistance Silver Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8.032700574 7.572786944 7.269156451 7.426634761 171464077 dnaK Stress Heat shock Polynucleobacter necessarius subsp. necessarius STIR1 7.021543927 7.055883538 217137 rubisco Carbon cycling Carbon fixation Synechococcus sp. superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.269305652 7.269470045 7.076043912 7.076054227 7.026420409 56785434 phenol_oxidase Carbon cycling Carbon degradation Lignin Panus rudis superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Lentinaceae;genus:Panus; 6.823615079 7.114089898 6.764326247 7.251828273 158310652 sigma_70 Stress Sigma factors Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;genus:Acaryochloris;species:Acaryochloris marina; 7.506950783 7.444399697 239834168 glnA Stress Nitrogen limitation Ochrobactrum intermedium LMG 3301 7.413596206 7.105788715 7.080515512 7.397343185 7.183244891 7.194123657 167854374 MATE_antibiotic Antibiotic resistance transporter Haemophilus parasuis 29755 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus parasuis; 7.046820211 6.970524205 219676561 atzB Organic Remediation Herbicides related compound gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 6.969544647 7.15209112 77459149 ahpF Stress Oxygen stress Pseudomonas fluorescens Pf0-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.270921432 7.246604654 6.998178326 6.738354879 225388598 sigma_70 Stress Sigma factors Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 7.923333393 7.400849231 7.436970193 8.114690072 7.758977964 253998437 iro virulence Methylovorus sp. SIP3-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylovorus; 6.764237644 7.167534864 6.767784452 7.957135345 7.194834659 7.427603117 91693790 nagG Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 7.170168061 7.206291642 7.474433017 154504656 atzA Organic Remediation Herbicides related compound Ruminococcus gnavus ATCC 29149 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus gnavus; 7.1437229 7.544693919 6.964089071 7.463040892 6.940892839 7.115492316 7.280358079 149924085 AceA Carbon cycling Carbon degradation others Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 7.930219787 8.067357235 8.107614996 8.304076358 8.449904624 8.448223224 8.124282235 39650914 fnr Stress Oxygen stress Rhodopseudomonas palustris CGA009 7.161200315 7.110754757 6.606764443 7.434378805 161332116 pilin virulence pilin Shewanella benthica KT99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella benthica; 7.77088101 7.524376383 7.739270659 7.887801672 7.525218316 7.968819781 87302558 sigma_70 Stress Sigma factors Synechococcus sp. WH 5701 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 6.865791976 7.206558961 7.256433789 7.192929067 7.60747807 115256231 chnC Organic Remediation Other Hydrocarbons Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.370935279 7.632585341 7.632726264 7.326339298 7.691742883 166858363 iro virulence Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.208427433 6.888107644 2462967 aclB Carbon cycling Carbon fixation Bacillus subtilis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.6119045 7.831737357 7.492697748 7.349750194 7.834997542 151302293 APS_AprA Sulphur adenylylsulfate reductase Desulfobulbus sp. DSM 2033 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfobulbus; 7.252349037 7.241395065 7.127752491 7.546757631 7.284535113 7.192435361 7.53244332 119775302 pimF Organic Remediation Aromatics Aromatic carboxylic acid Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 7.377301142 7.122238739 7.163711705 7.70026378 7.12953384 6.996334207 7.131581436 260847764 fnr Stress Oxygen stress Mitsuokella multacida DSM 20544 6.848141678 7.337713165 187926588 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 6.903477885 7.273470939 7.019945679 7.039317664 7.37442383 46680 sigma_32 Stress Sigma factors Stigmatella aurantiaca DW4/3-1 7.393666761 7.249919712 114706443 phoB Stress Phosphate limitation Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 7.076454997 7.413544082 6.942878626 7.488861124 7.176444275 7.280057646 7.734923441 13476008 HBH Organic Remediation Aromatics BTEX and related aromatics Mesorhizobium loti MAFF303099 6.894083972 7.201019732 7.108109012 6.649686991 7.402502275 160917700 narG Nitrogen Denitrification uncultured bacterium 7.467565539 7.5470945 67158454 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 6.936615795 7.271120831 119963412 nifH Nitrogen Nitrogen fixation Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 6.908649492 7.118508228 124515930 mer Metal Resistance Mercury Leptospirillum sp. Group II UBA superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 7.488540146 7.790428842 7.607303883 7.370997188 8.06673795 7.792159762 7.731679877 95111085 TerC Metal Resistance Tellurium Pseudomonas superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae; 7.406596507 7.179492271 7.198558736 7.551529832 7.962063185 7.49105578 7.610943119 145243684 tfdA Organic Remediation Aromatics Chlorinated aromatics Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 6.795816397 6.973438057 157375083 cytochrome Energy process Energy process Shewanella sediminis HAW-EB3 7.208189277 7.049239617 153836087 pstB Stress Phosphate limitation Vibrio parahaemolyticus AQ3810 7.106958049 7.12971304 196158569 sigma_24 Stress Sigma factors Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 6.762618822 6.981709326 15640020 CopA Metal Resistance Copper Treponema pallidum subsp. pallidum str. Nichols 7.05121881 7.300504003 90415570 pstB Stress Phosphate limitation marine gamma proteobacterium HTCC2207 7.301997188 7.753971279 7.288306145 7.257904789 7.586705769 7.804453197 7.4343169 7.55288241 66391976 UvsW Bacteria phage REPLICATION Aeromonas phage 31 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.236018768 7.220164312 6.943358612 6.872511002 7.259246211 7.124643381 149832426 obgE Stress Radiation stress Ruminococcus obeum ATCC 29174 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus obeum; 6.890262037 7.111051673 62468094 bco Organic Remediation Aromatics Aromatic carboxylic acid uncultured bacterium superkingdom:Bacteria; 7.333557133 7.615576065 7.357763575 7.37292955 7.35726365 7.617743118 253782483 sigma_70 Stress Sigma factors Photorhabdus asymbiotica superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus; 7.381062824 7.492376943 149782951 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.020940375 7.369373885 6.731680775 7.408051258 7.197575664 6.953572711 145238118 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.159072678 7.236722805 7.622713956 7.207574665 7.15572011 3242405 gdh Nitrogen Ammonification Thermococcus profundus superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus; 7.141435646 6.770796028 165921961 pstB Stress Phosphate limitation Yersinia pestis biovar Orientalis str. F1991016 7.225212717 7.73268807 7.374556877 7.764290986 8.330837919 148474792 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 6.990193822 7.386475182 6.823019633 7.251151657 126178825 katE Stress Oxygen stress Methanoculleus marisnigri JR1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanoculleus;species:Methanoculleus marisnigri; 7.174164589 7.306618085 112463435 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 6.777953399 6.857625194 153834 pap virulence adhesin Streptococcus parasanguinis 7.678568392 7.565068089 7.141614343 7.710202142 7.512884087 6561863 amyA Carbon cycling Carbon degradation Starch Emericella nidulans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella; 7.020344492 7.483310399 148260770 nitrogen_fixation_genes Bioleaching Nitrogen Acidiphilium cryptum JF-5 7.462447162 7.677598212 7.315227036 7.273356609 7.475563668 168482710 srt virulence surface protein Streptococcus pneumoniae CDC1873-00 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus pneumoniae; 7.227510859 7.136235891 6.877589175 6.731026264 262393853 fnr Stress Oxygen stress Vibrio sp. Ex25 7.090113046 6.899731131 114225881 CopA Metal Resistance Copper Alkalilimnicola ehrlichei MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 7.145994213 7.407323107 7.183822636 7.722647294 7.320702997 7.316258965 23452281 toxin virulence toxin Staphylococcus hyicus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus; 6.914483565 7.343528827 7.799648305 7.175369554 7.774254839 7.248389637 7.568418325 7.550199841 1353678 ZntA Metal Resistance Zinc 7.014564795 7.290358494 7.321003837 6.835894762 7.677333577 7.367306814 7.218695627 7.669304159 251796098 Tet Antibiotic resistance other Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.132102711 7.222753553 213975463 amyA Carbon cycling Carbon degradation Starch Salmonella enterica subsp. enterica serovar Typhi str. AG3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 7.375212046 7.598452942 7.836098191 7.224783701 7.097993277 7.312437807 7.338725922 166030892 ChrA Metal Resistance Chromium Dorea formicigenerans ATCC 27755 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Dorea;species:Dorea formicigenerans; 7.062214288 7.065387796 6.75074059 7.345107064 163783840 pstA Stress Phosphate limitation Hydrogenivirga sp. 128-5-R1-1 7.087453833 7.243221508 157375938 atzC Organic Remediation Herbicides related compound Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 6.891539703 6.987767299 268312274 glnA Stress Nitrogen limitation Thermomonospora curvata DSM 43183 8.033872677 7.914599646 8.074308664 8.149575044 7.827860675 2645002 dnaK Stress Heat shock Blastopirellula marina DSM 3645 8.045621733 8.115614264 7.923800305 7.798570853 8.003841873 8.018489194 8.261838682 260583947 obgE Stress Radiation stress Granulicatella elegans ATCC 700633 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Carnobacteriaceae;genus:Granulicatella;species:Granulicatella elegans; 6.835032717 7.063917534 33241312 sigma_70 Stress Sigma factors Prochlorococcus marinus subsp. marinus str. CCMP1375 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 7.166799794 7.262130486 7.309972335 7.546108736 7.470720248 7.610935726 119369948 gyrB other category gyrB uncultured bacterium superkingdom:Bacteria; 7.212492886 7.552281415 7.230433184 7.713849367 7.212750743 7.608229596 85689747 ahpC Stress Oxygen stress Erythrobacter sp. NAP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 7.417613677 7.410590546 7.241321821 7.35345632 7.675670162 7.346227591 7.298165028 7.618180725 157781455 groEL Stress Heat shock Enterococcus saccharolyticus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus; 7.228323114 7.062756812 148571552 katE Stress Oxygen stress Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 7.079480126 7.18391912 6.79891508 7.224046689 114320787 sigma_24 Stress Sigma factors Alkalilimnicola ehrlichii MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 7.61478419 7.490652055 7.694888363 7.547041156 7.527276054 146401235 glnA Stress Nitrogen limitation Acidiphilium cryptum JF-5 7.091015902 7.448545268 7.457483596 7.198002599 94426188 mer Metal Resistance Mercury Oceanobacter sp. RED65 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Bermanella; 7.306846339 7.146858042 6.819228167 6.593684646 44662911 TerD Metal Resistance Tellurium symbiont bacterium of Paederus fuscipes superkingdom:Bacteria; 7.674736662 7.876395967 7.485618959 7.291106987 8.010265037 83361963 ureC Nitrogen Ammonification Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 7.510006972 7.394102395 7.31127914 6.818933485 7.401389573 7.39584176 7.665118559 253778252 cda Carbon cycling Carbon degradation Starch Alicyclobacillus acidocaldarius 7.030087936 7.137973913 90577527 MFS_antibiotic Antibiotic resistance transporter Vibrio angustum S14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium angustum; 6.888391747 7.192765948 260425528 glnA Stress Nitrogen limitation Citreicella sp. SE45 7.587507515 7.850161734 75701004 vanA Carbon cycling Carbon degradation Others Anabaena variabilis ATCC 29413 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena variabilis; 7.10916322 6.857768976 27461255 tutFDG Organic Remediation Aromatics BTEX and related aromatics Clostridium butyricum superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 7.240829295 6.984388391 225021249 sigma_70 Stress Sigma factors Corynebacterium matruchotii ATCC 33806 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium matruchotii; 7.234530202 7.063183912 6.921256868 7.454400052 148512427 ChrA Metal Resistance Chromium Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.584789732 7.579480891 7.653717914 7.740632599 8.114912932 7.693836075 7.944167621 24461653 fnr Stress Oxygen stress Pseudomonas aeruginosa 7.893265614 7.646990082 7.448632359 7.782815182 7.678463124 7.71306629 7.850200965 34017106 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 6.842174032 6.991727247 70930941 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.583275828 7.656612839 6.848331378 7.283629439 7.699862297 242348992 endochitinase Carbon cycling Carbon degradation Chitin Staphylococcus epidermidis M23864:W1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus epidermidis; 6.906759635 6.990368614 188996707 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Sulfurihydrogenibium sp. YO3AOP1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Hydrogenothermaceae;genus:Sulfurihydrogenibium; 7.443796204 7.276699287 7.211275564 7.424039837 115398762 pheA Organic Remediation Aromatics Other aromatics Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.105715584 7.211174787 189500956 sigma_70 Stress Sigma factors Chlorobium phaeobacteroides BS1 6.931118038 7.044833209 7.091185052 110556603 CopA Metal Resistance Copper Colletotrichum lagenarium superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;family:Glomerellaceae;genus:Colletotrichum; 7.803610807 7.74008795 119671177 xylC Organic Remediation Aromatics BTEX and related aromatics Azoarcus sp. BH72 7.541763859 7.402896243 7.454404719 7.048946958 7.408357854 7.504035294 7.622146318 85835208 CadA Metal Resistance Cadmium Vibrio sp. MED222 7.082993013 7.209199851 7.194505014 6.761397851 7.512832264 160879563 tutFDG Organic Remediation Aromatics BTEX and related aromatics Clostridium phytofermentans ISDg superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium phytofermentans; 7.227957684 6.978809998 6.995789697 7.386775988 89512846 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.013334576 6.965543848 229523095 amyA Carbon cycling Carbon degradation Starch Vibrio cholerae TM 11079-80 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 6.561676622 6.778304224 113952817 grpE Stress Heat shock Synechococcus sp. CC9311 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.035805941 7.105719344 6.856615545 7.368243384 254506599 endochitinase Carbon cycling Carbon degradation Chitin Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.582108042 7.489000131 7.037196688 7.648266165 7.445503099 7.533393682 27367826 katE Stress Oxygen stress Vibrio vulnificus CMCP6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 7.142662059 7.340525675 6.986936673 7.269640665 206566852 nhh Organic Remediation Aromatics Nitoaromatics Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 8.111177488 7.81175787 7.657748722 7.833968417 7.907388791 7.854857719 7.983078503 7.696585271 145960923 oxyR Stress Oxygen stress Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 7.278930213 7.602417332 7.69743352 7.845237811 7.310443568 7.397090768 7.673569015 121593559 nagG Organic Remediation Aromatics Aromatic carboxylic acid Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 7.568784761 7.532470719 7.596214727 7.654292273 8.030397612 7.753435872 7.817042926 7.95286705 109452561 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.803787758 7.963178066 27354322 dmsA Organic Remediation Others Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.13278424 7.036939968 6.877088775 7.340255517 7.005084014 7.386519282 212560755 gyrB other category gyrB Anoxybacillus flavithermus WK1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Anoxybacillus;species:Anoxybacillus flavithermus; 6.868097245 6.978135006 88703903 fnr Stress Oxygen stress Congregibacter litoralis KT71 6.95782099 7.418007474 7.487404333 7.510823112 146402358 ATP_synthase_F1_or_F0 Bioleaching other category Acidiphilium cryptum JF-5 7.006263676 7.774001436 206590713 gyrB other category gyrB Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 7.279665407 6.979691856 262300239 phoB Stress Phosphate limitation Acinetobacter radioresistens SH164 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter radioresistens; 7.142485124 7.461421419 111026180 bphF1 Organic Remediation Aromatics Polycyclic aromatics Rhodococcus sp. RHA1 7.671675415 7.600307827 7.372391266 7.443021709 7.82224702 7.947678268 7.77436906 44484 gyrB other category gyrB Mycoplasma pneumoniae superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Mycoplasmatales;family:Mycoplasmataceae;genus:Mycoplasma; 7.240823552 7.081973847 88944211 TerD Metal Resistance Tellurium Desulfotomaculum reducens MI-1 7.304714521 7.085961899 169811098 akbF Organic Remediation Aromatics BTEX and related aromatics Shewanella woodyi ATCC 51908 7.28480049 7.154077132 6.556361816 7.277728997 91068826 pcc Carbon cycling Carbon fixation Rickettsia bellii RML369-C superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales;family:Rickettsiaceae;genus:Rickettsia;species:Rickettsia bellii; 7.078827606 7.35473238 7.230880596 7.209472923 7.139943288 76877076 vip virulence virulence protein Pseudoalteromonas haloplanktis TAC125 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas haloplanktis; 6.690959496 7.21530076 149823014 atzA Organic Remediation Herbicides related compound Limnobacter sp. MED105 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 7.099071952 7.142319165 227190745 SMR_antibiotics Antibiotic resistance transporter Lactobacillus brevis subsp. gravesensis ATCC 27305 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus brevis; 6.843864601 7.323910943 110818504 MFS_antibiotic Antibiotic resistance transporter Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7.051486809 7.028056464 7.432955438 196190485 nhh Organic Remediation Aromatics Nitoaromatics Synechococcus sp. PCC 7335 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.407268673 7.443594107 7.541182678 7.146495851 7.523267216 7.342319181 7.578318769 32453745 motA Bacteria phage REPLICATION Enterobacteria phage RB69 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.43053532 7.503512971 7.223166978 7.618914628 7.692197919 8.003925485 7.777927419 7.669792007 167071000 tfdA Organic Remediation Aromatics Chlorinated aromatics Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.94609295 7.364024251 7.94845524 7.7132533 7.757463048 8.155059096 160880445 hrcA Stress Heat shock Clostridium phytofermentans ISDg superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium phytofermentans; 7.254516521 7.453964069 6.913871297 7.118425812 187600611 pulA Carbon cycling Carbon degradation Starch Chloroflexus sp. Y-400-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus; 7.114444597 7.242254725 6.924221874 7.079367651 213964973 alkK Organic Remediation Others Corynebacterium amycolatum SK46 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium amycolatum; 7.745569603 7.485525888 7.089616489 7.675025438 7.778659098 7.784811612 7.205928366 7.569002001 213989046 AceA Carbon cycling Carbon degradation others Acinetobacter baumannii AB307-0294 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 6.845980574 6.862222938 28268547 phenol_oxidase Carbon cycling Carbon degradation Lignin Coprinellus congregatus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinellus; 7.015400867 6.971569244 254547614 RNA_dependent__RNA_polymerase Bacteria phage REPLICATION Enterobacteria phage FI family:Leviviridae;genus:Allolevivirus;species:Enterobacteria phage FI sensu lato; 6.802742268 7.072258244 6.599548509 7.394711671 7.122138254 6.980982738 7.191827658 37791153 phenol_oxidase Carbon cycling Carbon degradation Lignin Volvariella volvacea superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pluteaceae;genus:Volvariella; 7.653347221 7.757055304 253985412 phoA Stress Phosphate limitation Methylovorus sp. SIP3-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylovorus; 7.583709823 7.483640074 7.596246466 8.217218342 8.053624824 7.813779282 8.032981017 20516009 ArsC Metal Resistance Arsenic Thermoanaerobacter tengcongensis MB4 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Thermoanaerobacter;species:Thermoanaerobacter tengcongensis; 7.163722693 7.302809172 217977446 mmoX Carbon cycling Methane Methane oxidation Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 7.469609475 7.125272933 7.112798736 7.776347311 7.659654301 7.579958759 7.66730824 7.445916384 242132382 ahpC Stress Oxygen stress Dickeya dadantii Ech703 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 7.476087146 7.543241745 6.953520567 7.363537026 7.778424712 7.653151272 7.221431298 149825029 hrcA Stress Heat shock Limnobacter sp. MED105 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 6.975573802 7.08085793 189419948 pstA Stress Phosphate limitation Geobacter lovleyi SZ 7.8970583 7.921763556 7.854146998 7.486096128 7.730633428 7.682097383 8.094384858 212678704 nitA Organic Remediation Aromatics Other aromatics Providencia rustigianii DSM 4541 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 7.550536392 7.644526646 228870561 APS_AprA Sulphur adenylylsulfate reductase Desulfotomaculum acetoxidans DSM 771 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum acetoxidans; 6.989052132 6.876872854 119403967 BpH Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7.265837544 7.573444164 6.906711643 7.124887286 7.599622831 6.868956496 7.27898358 222082143 NirB Nitrogen Assimilatory N reduction Agrobacterium radiobacter K84 6.653148118 7.54886858 15894169 hly virulence hemolysin Clostridium acetobutylicum ATCC 824 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium acetobutylicum; 6.548942456 7.350428666 166065021 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.398091586 7.560521721 7.204797188 7.003653527 7.141639155 7.276185599 119898713 nagG Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 7.366717333 7.413262335 6.823127742 6.740827221 7.81994646 7.207442292 7.081081584 7.44876217 87285947 sigma_24 Stress Sigma factors Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 7.576843211 7.659482326 7.30925632 7.625107879 7.314925761 7.545935392 241761966 pstB Stress Phosphate limitation Zymomonas mobilis subsp. mobilis ATCC 10988 7.734832192 7.962338016 7.975923877 7.754456233 146450307 tfdA Organic Remediation Aromatics Chlorinated aromatics Lodderomyces elongisporus NRRL YB-4239 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Lodderomyces;species:Lodderomyces elongisporus; 7.198072881 7.051652191 218288652 TehB Metal Resistance Tellurium Alicyclobacillus acidocaldarius LAA1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 7.279520777 7.206288512 6.889588484 7.532698014 7.049867268 6.904772471 158138725 napA Nitrogen Dissimilatory N reduction uncultured bacterium 7.462519445 7.686184279 7.599208906 7.888037833 7.618469185 7.451933881 7.594861871 219675417 glnA Stress Nitrogen limitation gamma proteobacterium NOR5-3 7.127569668 7.134946451 7.040834183 7.292406752 89201309 pulA Carbon cycling Carbon degradation Starch Bacillus cereus subsp. cytotoxis NVH 391-98 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cytotoxicus; 6.947251511 6.996430866 114552820 obgE Stress Radiation stress Mariprofundus ferrooxydans PV-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Zetaproteobacteria;order:Mariprofundales;family:Mariprofundaceae;genus:Mariprofundus;species:Mariprofundus ferrooxydans; 6.719161591 6.967552978 7.245165712 126459918 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pyrobaculum calidifontis JCM 11548 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum calidifontis; 7.404421803 7.481025047 113461681 sigma_32 Stress Sigma factors Haemophilus somnus 129PT superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Histophilus;species:Histophilus somni; 7.320820475 7.269133164 6.79757499 6.813495967 7.561039294 7.31174496 7.338616205 7.134455698 146190854 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8.006828062 7.89012441 8.002570939 8.076554505 7.951040318 116222615 sigma_24 Stress Sigma factors Candidatus Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 7.318591946 7.460136917 7.554472253 7.592849544 7.474224653 7.454024454 198254734 phn Organic Remediation Herbicides related compound Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 7.268839232 7.582443566 7.35914458 7.132636245 7.390560433 7.255836743 7.410041317 7.430606168 209420714 pmoA Carbon cycling Methane Methane oxidation uncultured methane-oxidizing bacterium superkingdom:Bacteria;phylum:Proteobacteria; 7.663404715 7.15215868 7.563062302 7.512310133 7.750095671 7.80582485 7.473066983 258509138 srt virulence surface protein Lactobacillus rhamnosus GG superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 7.852565278 7.913568097 7.410678577 7.627212268 7.631778781 7.559546047 269828039 nplT Carbon cycling Carbon degradation Starch Vibrio alginolyticus 40B 7.066900565 6.91255785 6.83784968 6.698778942 7.434322172 7.300871717 7.038956669 91798211 CopA Metal Resistance Copper Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 7.297104193 7.386425951 7.660053859 7.168679645 7.771164098 7.142911373 7.285593764 7.752046801 221157983 sigma_70 Stress Sigma factors Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 7.224020862 7.685102772 7.409503681 7.210866815 229351386 iro virulence Vibrio cholerae B33 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 7.398549581 7.681578732 7.137912215 7.322674966 7.692884395 7.765797015 7.260491839 13022197 atzD Organic Remediation Herbicides related compound Enterobacter cloacae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 7.169176727 7.605627697 158335492 sigma_70 Stress Sigma factors Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;genus:Acaryochloris;species:Acaryochloris marina; 7.3391577 7.807448721 7.428776801 7.167367392 7.438407895 7.069431428 145215318 CopA Metal Resistance Copper Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 7.655014501 7.692330288 7.513824442 7.926968207 88599847 glnA Stress Nitrogen limitation Ehrlichia chaffeensis str. Arkansas 7.036250749 6.954543733 260598199 nasA Nitrogen Assimilatory N reduction Cronobacter turicensis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter; 7.193274697 7.641004812 7.970172502 7.013028887 8.227960624 7.469478576 7.519284112 7.719608152 214028915 sox Sulphur Sulphur oxidation Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.329656039 7.215417981 262219488 iuc virulence aerobactin Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;species:Grimontia hollisae; 7.414355766 7.343649399 7.305829325 7.047102807 7.557209118 7.616899177 7.685988142 7.428649098 87302502 rubisco Carbon cycling Carbon fixation Synechococcus sp. WH 5701 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.263905946 7.574908019 7.131651226 6.997779419 86283344 MFS_antibiotic Antibiotic resistance transporter Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.620820415 7.297107758 7.430405947 7.16859264 7.601294775 7.606177835 149936153 atzA Organic Remediation Herbicides related compound Parabacteroides distasonis ATCC 8503 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides distasonis; 7.217137586 6.905068925 6.987912376 7.164275828 7.788351528 7.234315905 7.448194806 238708675 pstB Stress Phosphate limitation Yersinia rohdei ATCC 43380 7.604853387 7.484275869 7.772761411 6.89126378 7.908327808 7.163418252 7.577129335 119641190 carA Organic Remediation Aromatics Heterocyclic aromatics uncultured bacterium superkingdom:Bacteria; 6.974279304 6.958616043 219718713 phdCI Organic Remediation Aromatics Polycyclic aromatics Stenotrophomonas sp. SKA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 8.137158081 8.381495344 8.200070707 7.847056875 7.958540776 7.759972795 7.890024251 148259851 NADH_ubiquinone_oxidoreductase Bioleaching Electron transport Acidiphilium cryptum JF-5 7.03642979 7.227912009 7.098088369 6.636504197 149949004 dmsA Organic Remediation Others Alkaliphilus metalliredigens QYMF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus metalliredigens; 7.895037542 7.649672835 7.086857081 7.302443324 7.631716943 7.261498823 7.303429804 88604900 endolysin_transglycosylase Bacteria phage LYSIS Burkholderia cepacia phage BcepNazgul order:Caudovirales;family:Siphoviridae; 6.904574151 7.12994788 6.897265371 7.151422013 7.096425823 6.847332974 7.40111395 159173807 pilin virulence pilin Vibrio sp. AND4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.023675191 7.096757309 260774244 amyA Carbon cycling Carbon degradation Starch Vibrio metschnikovii CIP 69.14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio metschnikovii; 7.486783109 7.556865498 76558586 alkK Organic Remediation Others Natronomonas pharaonis DSM 2160 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natronomonas;species:Natronomonas pharaonis; 7.808616656 7.569575319 7.413481802 7.987141309 7.79869694 7.779608315 126656961 ArsC Metal Resistance Arsenic Cyanothece sp. CCY0110 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 6.880626484 6.825007095 151563810 CadA Metal Resistance Cadmium Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 7.176505084 7.509315312 7.267077875 7.213788097 7.756190478 7.413652015 7.590128479 7.823939664 188534426 cydB Stress Oxygen limitation Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 6.900652009 7.281457437 16126058 pimF Organic Remediation Aromatics Aromatic carboxylic acid Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 7.535145669 7.386525168 7.386255228 7.853826887 29609644 amyA Carbon cycling Carbon degradation Starch Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 6.955054944 7.148076913 7.345581847 7.487790636 260158469 vip virulence virulence protein Granulicatella elegans ATCC 700633 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Carnobacteriaceae;genus:Granulicatella;species:Granulicatella elegans; 7.299586418 7.323780319 7.220918929 7.490849457 239521598 clpC Stress Protein stress Clostridiales bacterium 1_7_47_FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales; 7.496115972 7.224199271 179351331 fnr Stress Oxygen stress Natranaerobius thermophilus JW/NM-WN-LF 6.646522164 7.149089168 78697882 ZntA Metal Resistance Zinc Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.569805841 7.408653069 7.964350158 7.484121343 7.291751269 7.377550149 126732115 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 7.581573519 7.681198384 7.266497687 6.750769062 7.730335466 7.266729705 7.058534278 145243772 pectinase Carbon cycling Carbon degradation Pectin Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.221765739 7.055118664 6.916876686 7.402014133 223937825 sigma_24 Stress Sigma factors bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 7.345162437 6.941513373 6.807007962 6.970345792 6.960717536 7.309530052 255993978 srt virulence surface protein Eubacterium saphenum ATCC 49989 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium saphenum; 7.243981509 7.201518226 91711656 CopA Metal Resistance Copper Methanococcoides burtonii DSM 6242 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanococcoides;species:Methanococcoides burtonii; 7.656437586 7.855590739 7.582253942 7.160366576 8.294897249 39982228 nrfA Nitrogen Dissimilatory N reduction Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 7.630404575 7.662390971 7.557046407 7.292970835 83634894 amyA Carbon cycling Carbon degradation Starch Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 7.917963905 7.620941153 7.838235649 7.618514836 229870768 ahpC Stress Oxygen stress Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 7.199118398 7.225120414 85694991 ZntA Metal Resistance Zinc Idiomarina baltica OS145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina baltica; 7.375126807 7.058273177 167352366 dmsA Organic Remediation Others Shewanella halifaxensis HAW-EB4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella halifaxensis; 7.738178016 7.591561666 7.905395643 7.989898259 8.1691877 7.83878837 111225504 nicdehydr Organic Remediation Aromatics Heterocyclic aromatics Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 7.789773438 7.793269413 7.323658622 7.544620104 7.979844943 7.493231064 7.776178143 66047663 ureC Nitrogen Ammonification Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 7.713845151 7.209304491 119226136 gyrB other category gyrB Rhodococcus erythropolis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7.645931814 8.03064076 7.368274412 8.140891275 7.782489301 7.861499584 7.73891179 157316642 oxyR Stress Oxygen stress Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 7.666023442 7.507373652 7.485851769 7.68248018 254429014 pstB Stress Phosphate limitation Alcanivorax sp. DG881 7.664108319 7.643397854 7.366255323 7.701707485 7.799679509 7.590235191 8.039522154 242123257 sigma_24 Stress Sigma factors Desulfovibrio salexigens DSM 2638 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio salexigens; 7.141278996 7.067877226 6.741533563 7.296631327 209492273 cap virulence capsule Arthrospira maxima CS-328 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira maxima; 6.73252862 6.687952028 198261707 czcA Metal Resistance "Cadmium,Cobalt,Zinc" gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 6.870153032 6.782651704 7.506722099 7.058235357 6.782351419 7.271038066 151562278 rubisco Carbon cycling Carbon fixation Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 7.952321723 8.430019057 7.861536577 7.585685832 7.361722955 7.592223852 119451573 gyrB other category gyrB marine gamma proteobacterium HTCC2143 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.057826107 7.085179867 6.871127724 7.263754226 7.555077064 7.448324361 7.753799388 7.793807859 269789239 sigma_24 Stress Sigma factors Thermobaculum terrenum ATCC BAA-798 superkingdom:Bacteria;genus:Thermobaculum;species:Thermobaculum terrenum; 7.207598849 7.127353417 6.983008701 7.18188396 7.330609999 254444267 ureC Nitrogen Ammonification Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 7.096402713 7.12561071 6.946478726 7.423514079 45126707 gyrB other category gyrB Halomonas sp. TNB I20 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 7.506015759 7.074291656 6.955357308 7.326732865 7.329024564 7.102689686 239506779 amyA Carbon cycling Carbon degradation Starch Kosmotoga olearia TBF 19.5.1 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Kosmotoga;species:Kosmotoga olearia; 6.93701987 6.798152004 6.633558103 7.570007439 145241462 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.76932833 7.877779488 8.308178975 7.880800962 8.079390413 8.003221997 8.722544456 124483650 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Herbaspirillum seropedicae superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum; 7.58190598 7.383406857 7.149509752 7.495352723 7.602264966 7.860903515 7.529041491 27125547 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.157467297 7.305162676 6.977098217 7.462280012 7.121868974 7.154938336 32034495 sigma_70 Stress Sigma factors Actinobacillus pleuropneumoniae serovar 1 str. 4074 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus pleuropneumoniae; 7.522624084 7.399115382 7.51282551 7.616085721 7.805339655 7.659306392 7.668541258 7.700149031 268592381 type_III_secretion virulence secretion Providencia rettgeri DSM 1131 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rettgeri; 7.135749935 7.083241097 177843199 sigma_24 Stress Sigma factors Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 7.452442456 7.443519944 7.145623267 7.539056782 7.700682354 7.926298057 7.589836014 7.479024106 17826941 pheA Organic Remediation Aromatics Other aromatics Burkholderia kururiensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.171985109 7.321777462 7.454060479 6.943882493 7.502159813 152981778 sox Sulphur Sulphur oxidation Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 7.303274245 7.376214553 7.153635499 6.910130271 7.667027768 151302191 AprA Sulphur adenylylsulfate reductase Desulfonatronovibrio hydrogenovorans 7.743951826 7.500585241 7.624156125 7.701238708 7.624096061 7.383970299 147886248 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 7.057040384 7.505215003 7.543543155 7.511330803 7.619290843 6540593 fcbC Organic Remediation Aromatics Chlorinated aromatics Pseudomonas sp. DJ-12 superkingdom:Bacteria;phylum:Proteobacteria; 7.752441822 7.775419408 7.822719556 7.842832354 7.791591708 169638943 pstA Stress Phosphate limitation Candidatus Desulforudis audaxviator MP104C 7.037416363 7.108640699 88607110 pstB Stress Phosphate limitation Anaplasma phagocytophilum HZ 7.220155043 7.139948028 167769482 hrcA Stress Heat shock Anaerotruncus colihominis DSM 17241 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Anaerotruncus;species:Anaerotruncus colihominis; 6.947453139 7.132274012 6.894506644 7.61355099 126658877 sigma_24 Stress Sigma factors Cyanothece sp. CCY0110 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 6.757578153 7.011611144 212705332 atzA Organic Remediation Herbicides related compound Providencia rustigianii DSM 4541 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 7.467901905 7.624003125 7.00942552 7.26313233 7.413107663 7.232095925 7.150042723 7.332788642 38199524 pcc Carbon cycling Carbon fixation Corynebacterium diphtheriae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium; 7.065589274 7.257629978 62512299 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.187588888 7.106380443 6.899708187 7.652541496 19918701 rubisco Carbon cycling Carbon fixation Methanosarcina acetivorans C2A superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina acetivorans; 7.298087055 7.094449595 7.080236631 6.954210353 7.05334389 7.094132852 163782254 mer Metal Resistance Mercury Hydrogenivirga sp. 128-5-R1-1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenivirga; 8.072402903 7.985451148 8.049813998 8.143368365 8.461752085 8.647137882 8.95725692 228699097 AceA Carbon cycling Carbon degradation others Bacillus cereus Rock3-44 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 7.073118634 7.389794465 217412537 amyA Carbon cycling Carbon degradation Starch Bifidobacterium gallicum DSM 20093 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 7.168324087 7.115318724 6.871415569 7.295065688 189485360 grpE Stress Heat shock uncultured Termite group 1 bacterium phylotype Rs-D17 superkingdom:Bacteria;phylum:Elusimicrobia;species:uncultured Termite group 1 bacterium; 7.249183396 6.947688721 47059462 pmoA Carbon cycling Methane Methane oxidation uncultured putative methanotroph superkingdom:Bacteria; 7.184359577 7.282966583 7.310410112 6.67990873 50542706 rubisco Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.665471662 7.646801825 7.577162234 7.85265184 7.964625428 7.741752721 255259905 B_lactamase_C Antibiotic resistance Beta-lactamases Sideroxydans lithotrophicus ES-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Sideroxydans;species:Sideroxydans lithotrophicus; 8.0767483 7.896359332 7.52756388 8.08934021 7.829454109 7.746852317 7.907965956 167656736 pstB Stress Phosphate limitation Eubacterium siraeum DSM 15702 7.396819301 7.224315517 7.081140628 7.055997825 68547924 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 6.949445104 7.171821229 6.658295502 7.289374464 261880020 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Prevotella bergensis DSM 17361 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bergensis; 7.73159177 7.971872781 7.441720515 7.850190024 7.781748784 7.661973694 251796475 rubisco Carbon cycling Carbon fixation Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.245588785 7.761005003 167760684 bco Organic Remediation Aromatics Aromatic carboxylic acid Clostridium scindens ATCC 35704 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium scindens; 7.109520365 6.938313848 71018691 chnB Organic Remediation Other Hydrocarbons Ustilago maydis 521 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Ustilaginomycetes;order:Ustilaginales;family:Ustilaginaceae;genus:Ustilago;species:Ustilago maydis; 7.250673198 7.322323101 6.770503033 6.862650839 7.445646739 157748523 CadA Metal Resistance Cadmium Caenorhabditis briggsae superkingdom:Eukaryota;kingdom:Metazoa;phylum:Nematoda;class:Chromadorea;order:Rhabditida;family:Rhabditidae;genus:Caenorhabditis;species:Caenorhabditis briggsae; 7.3703122 7.258377546 160900049 AceA Carbon cycling Carbon degradation others Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.493525874 7.55104923 7.395451518 7.177731298 7.727245878 7.440053507 7.550202301 261252151 pstS Stress Phosphate limitation Vibrio orientalis CIP 102891 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 7.175946246 7.303483782 20502007 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.537912239 7.391453506 7.278543332 7.795251546 7.918451492 7.987528673 7.668182435 7.797433889 211731824 endolysin_transglycosylase Bacteria phage LYSIS Bacteriophage APSE-6 7.043748861 7.197353201 6.703866838 7.481408341 6.854170597 7.258023256 226831452 sigma_24 Stress Sigma factors Actinomyces coleocanis DSM 15436 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces coleocanis; 7.383624506 7.534478771 7.757674417 7.747213037 7.703072126 7.492386763 7.827786324 254460913 AceB Carbon cycling Carbon degradation others Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 6.901790145 7.133065549 154253826 CopA Metal Resistance Copper Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 8.20895713 7.793602706 7.770464342 7.773574223 110630946 nifH Nitrogen Nitrogen fixation uncultured soil bacterium superkingdom:Bacteria; 8.123350136 7.693179775 8.051912952 7.781657635 14025279 akbF Organic Remediation Aromatics BTEX and related aromatics Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 7.143888566 7.446934625 7.334054664 7.558167046 157073783 gyrB other category gyrB Methylobacterium extorquens superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 7.406334798 7.294114787 6.898842925 7.292586554 7.325542166 7.3919612 88857853 hrcA Stress Heat shock Pseudoalteromonas tunicata D2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas tunicata; 7.802976868 7.788842365 7.769463117 7.491677688 7.573832445 7.79709363 8.272849489 78224126 cytochrome Energy process Energy process Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 7.631413107 7.112649559 7.336827033 7.427942133 260613131 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Vibrio metschnikovii CIP 69.14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio metschnikovii; 7.010810657 6.909476995 91188251 ppx Phosphorus Phosphorus utilization Vibrio alginolyticus 12G01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 7.322467821 7.725778586 7.352266714 6.981334777 7.669481732 227368654 fnr Stress Oxygen stress Chryseobacterium gleum ATCC 35910 7.047511729 7.138576299 94309217 sigma_32 Stress Sigma factors Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 7.636698401 7.576961501 7.362972649 7.615672395 7.592496571 7.751117311 7.762172628 118001378 ArsC Metal Resistance Arsenic Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.620704735 7.491223122 7.776977689 7.226541565 7.560079334 7.985178931 259649266 nplT Carbon cycling Carbon degradation Starch Lactobacillus rhamnosus GG superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 6.878153112 7.277802868 167594197 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 6.95590337 7.504077741 258536575 iro virulence Pantoea sp. At-9b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 7.19452274 7.606437413 6.961288862 7.423692198 7.761845958 7.477542039 7.132174701 7.357962239 157420104 endochitinase Carbon cycling Carbon degradation Chitin Chaetomium cupreum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium; 7.181779218 7.218327899 6.969709011 7.50026037 149198689 pcaG Organic Remediation Aromatics Other aromatics Lentisphaera araneosa HTCC2155 superkingdom:Bacteria;phylum:Lentisphaerae;order:Lentisphaerales;family:Lentisphaeraceae;genus:Lentisphaera;species:Lentisphaera araneosa; 7.167537081 7.193760002 108803705 sigma_24 Stress Sigma factors Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 7.783077093 8.103143986 7.562682393 8.079449971 7.988042505 7.907922188 7.814563349 238899257 type_III_secretion virulence secretion Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Candidatus Hamiltonella;species:Candidatus Hamiltonella defensa; 7.225752162 7.040847247 34104734 TehB Metal Resistance Tellurium Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 7.306631578 7.036295935 6.970440323 7.651391965 7.057158489 7.282997746 7.314643732 20904960 ArsC Metal Resistance Arsenic Methanosarcina mazei Go1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina mazei; 7.369022364 7.042562692 6.962849237 7.312823481 154294889 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 7.020382004 7.09970982 7804883 exoglucanase Carbon cycling Carbon degradation Cellulose Leptosphaeria maculans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Leptosphaeriaceae;genus:Leptosphaeria; 7.033768451 7.088841838 50954654 TerC Metal Resistance Tellurium Leifsonia xyli subsp. xyli str. CTCB07 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Leifsonia;species:Leifsonia xyli; 7.557643812 7.484249553 7.931908 6.955941812 7.492650267 7.49945139 116694355 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 7.499497075 7.915751576 7.712144909 7.885838314 7.996121842 78066436 MFS_antibiotic Antibiotic resistance transporter Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.127003264 7.024855658 7.128940348 7.051200306 66849447 amyA Carbon cycling Carbon degradation Starch Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 7.130783628 7.155495042 6.906295693 7.5836648 161505800 xylA Carbon cycling Carbon degradation Hemicellulose "Salmonella enterica subsp. arizonae serovar 62:z4,z23:--" superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 7.568463974 7.146905012 6.891765615 7.399908155 228768642 bphF1 Organic Remediation Aromatics Polycyclic aromatics Bacillus pseudomycoides DSM 12442 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pseudomycoides; 7.151032358 7.308173948 6.957601339 7.338212943 7.479465468 7.299696918 7.136415045 221739443 glucoamylase Carbon cycling Carbon degradation Starch Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 7.407837093 7.440026668 7.181856459 6.968601222 255945993 ureC Nitrogen Ammonification Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 7.282499154 7.354919039 6.659997693 7.185137931 7.405722925 6.967993363 7.54960261 14026768 PobA Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium loti MAFF303099 7.601432272 7.492392352 7.497911685 7.791471161 7.665909648 7.507858668 7.44479983 218750870 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.224255278 7.380216529 7.355682719 7.012273386 7.577387218 7.243521635 7.119776837 7.465220213 81251649 nirS Nitrogen Denitrification uncultured organism 7.904441291 7.708699459 7.649447164 8.141568095 8.036586249 7.858943718 7.88550773 7.819663151 67540966 AceB Carbon cycling Carbon degradation others Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.359488916 7.637823137 7.638835443 7.338695467 7.913180873 7.403396021 7.026555236 227509204 glnR Stress Nitrogen limitation Lactobacillus brevis subsp. gravesensis ATCC 27305 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus brevis; 7.044231872 6.923103781 262183371 grpE Stress Heat shock Corynebacterium aurimucosum ATCC 700975 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium aurimucosum; 7.172657581 7.647278689 6.884746873 7.325191316 78217865 Arylest Organic Remediation Aromatics Other aromatics Desulfovibrio desulfuricans G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 7.370078681 7.201688041 6.948651878 7.290151145 7.406138199 7.195794437 90336758 nhh Organic Remediation Aromatics Nitoaromatics Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 7.037281262 7.332180645 6.975406877 6.934767931 54026179 ppk Phosphorus Phosphorus utilization Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 7.01896911 7.233307302 7.262787733 7.134297237 7.313195633 7.311516873 7.457129084 239618481 obgE Stress Radiation stress Kosmotoga olearia TBF 19.5.1 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Kosmotoga;species:Kosmotoga olearia; 6.880607336 7.081327378 30171249 amoA Nitrogen Nitrification superkingdom:Bacteria; 7.676298355 7.629280849 7.709375504 7.754693204 7.755454762 169185875 nmoA Organic Remediation Aromatics Nitoaromatics Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.33200598 7.024172778 7.353059295 7.390675626 7.604259878 209976908 srt virulence surface protein Streptococcus sobrinus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 7.323163017 7.593351681 7.548170707 6.778510401 7.324121126 7.182780185 7.371960925 256542801 ara Carbon cycling Carbon degradation Hemicellulose Thermotoga naphthophila RKU-10 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga;species:Thermotoga naphthophila; 6.97768112 7.200463259 7.083857063 6.962204338 7.137666929 21224836 narH Stress Oxygen limitation Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 7.438099508 7.484322276 7.964608858 7.817791119 7.773137751 157411546 napA Nitrogen Dissimilatory N reduction uncultured prokaryote 6.570431536 7.15992045 218359144 TerC Metal Resistance Tellurium Escherichia fergusonii ATCC 35469 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia fergusonii; 7.134959161 7.196016045 195978041 pstB Stress Phosphate limitation Streptococcus equi subsp. zooepidemicus MGCS10565 7.909492769 7.799466998 218883379 pstA Stress Phosphate limitation Desulfurococcus kamchatkensis 1221n 7.555655889 7.534714124 7.041495737 7.465985741 81168530 nitA Organic Remediation Aromatics Other aromatics Synechococcus elongatus PCC 7942 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus;species:Synechococcus elongatus; 7.54459074 7.253401249 7.327879853 7.431349443 7.395872687 7.381135363 227368442 amyA Carbon cycling Carbon degradation Starch Chryseobacterium gleum ATCC 35910 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Chryseobacterium;species:Chryseobacterium gleum; 7.256708934 7.00172338 116754044 grpE Stress Heat shock Methanosaeta thermophila PT superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosaetaceae;genus:Methanosaeta;species:Methanosaeta thermophila; 8.316690148 7.42297397 7.787017077 8.024716538 8.187054907 8.291578301 8.289956134 257093877 fnr Stress Oxygen stress Candidatus Accumulibacter phosphatis clade IIA str. UW-1 7.435438993 7.138563827 152983107 czcC Metal Resistance "Cadmium,Cobalt,Zinc" Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 7.350544933 6.980279313 7.298838779 1771489 napA Nitrogen Dissimilatory N reduction Pseudomonas sp. superkingdom:Bacteria;phylum:Proteobacteria; 7.953597685 8.13347355 8.450889672 8.188055017 8.346301211 8.299787225 8.618462146 8.124510864 149752649 cda Carbon cycling Carbon degradation Starch Dorea longicatena DSM 13814 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Dorea;species:Dorea longicatena; 7.200434229 7.470075643 7.448974071 7.135820597 7.493543734 7.301900529 7.301667952 7.302721724 41817169 sigma_70 Stress Sigma factors Treponema denticola ATCC 35405 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema denticola; 7.44389971 6.965038338 114551159 mer Metal Resistance Mercury Mariprofundus ferrooxydans PV-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Zetaproteobacteria;order:Mariprofundales;family:Mariprofundaceae;genus:Mariprofundus;species:Mariprofundus ferrooxydans; 7.706491734 7.66699175 7.404608954 7.940738391 7.739810815 7.648458797 7.492675064 7.68773308 55978121 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.565034531 7.762990116 7.667961804 7.966693375 7.646854019 88866367 dsrB Sulphur sulfite reductase bacterium LS1101 superkingdom:Bacteria; 7.543560947 7.447459409 157850427 cumA Organic Remediation Aromatics Other aromatics uncultured bacterium 7.012705842 7.197612207 219862272 ahpC Stress Oxygen stress Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.34380705 7.517592319 7.26909338 7.717365738 7.920477036 7.674352866 7.517288894 154696119 nagG Organic Remediation Aromatics Aromatic carboxylic acid Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 7.340092906 6.922273203 227493136 ahpC Stress Oxygen stress Mobiluncus curtisii ATCC 43063 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus curtisii; 8.183611993 8.259356321 8.389721959 7.944893823 8.396840434 7.849821832 7.657651832 8.156877892 145213862 pcc Carbon cycling Carbon fixation Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 7.119446332 6.992627759 6.569961728 7.045775375 7.572497329 119483328 nitro Organic Remediation Others Lyngbya sp. PCC 8106 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Lyngbya; 7.357555438 7.185478072 161209982 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 7.027296378 7.221530483 145254736 phenol_oxidase Carbon cycling Carbon degradation Lignin Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.670591672 7.722513039 218677036 catB Organic Remediation Aromatics BTEX and related aromatics Vibrio splendidus LGP32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 7.023931453 7.14427144 229469611 glnR Stress Nitrogen limitation Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 7.163257057 7.466085569 146303108 Blue_copper_protein Bioleaching Sulphur Metallosphaera sedula DSM 5348 7.090276175 6.99940784 184205283 gyrB other category gyrB bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 7.229530275 7.595544493 7.348100886 6.762107422 7.22885173 7.433215539 197749341 napA Nitrogen Dissimilatory N reduction Mannheimia haemolytica PHL213 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Mannheimia;species:Mannheimia haemolytica; 7.08839223 7.420882299 258575777 katE Stress Oxygen stress Uncinocarpus reesii 1704 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 7.346388755 7.98271099 8.154141344 7.612766507 8.394148719 7.435003092 7.363590835 7.657524376 187236228 mcrA Carbon cycling Methane Methane production uncultured archaeon superkingdom:Archaea; 7.779612585 7.791127707 7.961253314 7.408700521 150273771 ChrA Metal Resistance Chromium Bacteroides capillosus ATCC 29799 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides capillosus; 7.032888741 7.031639285 6.821962132 7.604433163 7.030918609 6.806944698 6.955790829 110335215 CopA Metal Resistance Copper Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 8.247384612 7.727437699 8.277967739 8.381909435 7.790825521 7.78266539 7.940164988 91784642 akbF Organic Remediation Aromatics BTEX and related aromatics Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.508294064 7.150882577 94310443 rubisco Carbon cycling Carbon fixation Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 7.346335584 7.204587019 7.144689727 7.444292061 209525334 SmtA Metal Resistance Miscellaneous Arthrospira maxima CS-328 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira maxima; 7.116140742 7.687555211 7.494648016 7.327310318 7.637616696 7.327697388 7.632712257 117927572 groEL Stress Heat shock Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 7.314594601 7.408706477 7.649662201 7.155850407 7.668256795 89335325 grpE Stress Heat shock Desulfitobacterium hafniense Y51 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 7.247575 7.408654074 7.674441895 7.314247496 7.651615137 50546517 nmoA Organic Remediation Aromatics Nitoaromatics Yarrowia lipolytica superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Dipodascaceae;genus:Yarrowia;species:Yarrowia lipolytica; 7.356922021 7.165292381 6.640864647 7.522384289 109452438 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.067031785 7.142308714 254547594 RNA_dependent__RNA_polymerase Bacteria phage REPLICATION Enterobacteria phage Qbeta family:Leviviridae;genus:Allolevivirus;species:Enterobacteria phage Qbeta sensu lato; 6.787949377 6.985652786 7.186384372 6.85159221 7.873702407 6.957354141 6.885539024 7.386362974 254473489 ppk Phosphorus Phosphorus utilization Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 6.887096601 7.393747273 7.24484932 6.901486116 73534151 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 6.97110789 6.965012393 32895042 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.140371578 7.214894453 78047894 ZitB Metal Resistance Zinc Xanthomonas campestris pv. vesicatoria str. 85-10 6.947567674 7.007027132 7.577617878 7.184249608 7.321913171 541633 nplT Carbon cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.037406491 7.292533376 7.19346723 7.129861834 7.407968703 7.137992644 7.311085822 89210073 atzA Organic Remediation Herbicides related compound Halothermothrix orenii H 168 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Halanaerobiales;family:Halanaerobiaceae;genus:Halothermothrix;species:Halothermothrix orenii; 6.931397299 6.998357363 219688730 glucoamylase Carbon cycling Carbon degradation Starch Amylomyces rouxii superkingdom:Eukaryota;kingdom:Fungi;order:Mucorales;family:Mucoraceae;genus:Amylomyces; 7.047523803 6.84220344 229086561 ppx Phosphorus Phosphorus utilization Bacillus cereus Rock3-44 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 7.225446853 6.93721926 82945771 ArsC Metal Resistance Arsenic Magnetospirillum magneticum AMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 6.774359869 7.224514006 6.816026289 7.326288298 7.050321927 7.022129021 7.300065444 206580081 silC Metal Resistance Silver Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 7.710584059 7.35938189 7.415032755 7.440297002 7.829828034 7.696837768 7.502655293 7.615160394 67525861 amyA Carbon cycling Carbon degradation Starch Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.014429276 6.934837958 88786562 grpE Stress Heat shock Synechococcus sp. WH 7805 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.202737917 7.714996072 7.412697255 7.082373659 189425847 hydrogenase Energy process Energy process Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 7.191733656 7.200906472 7.503139795 7.513162775 28870180 xylA Carbon cycling Carbon degradation Hemicellulose Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 6.577337527 7.28057728 49647840 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Yarrowia lipolytica CLIB122 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Dipodascaceae;genus:Yarrowia;species:Yarrowia lipolytica; 7.739366498 7.598792699 7.334284586 7.620790871 7.81268189 7.841478154 7.815769262 7.661045852 229790966 grpE Stress Heat shock Abiotrophia defectiva ATCC 49176 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Aerococcaceae;genus:Abiotrophia;species:Abiotrophia defectiva; 7.343381956 6.972501083 6.841947537 7.323623958 2353018 gyrB other category gyrB Shewanella gelidimarina superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 7.245059938 7.487620024 7.413519942 7.465912234 7.391107961 7.348116721 7.407802314 83748064 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia solanacearum UW551 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 8.302255881 7.771277429 121302140 mer Metal Resistance Mercury Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 7.1678498 7.581794894 7.56282781 7.898521087 7.371639157 7.297230849 7.770487536 27378054 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.609023469 7.767193945 7.624755921 8.078517101 7.907555176 8.134246399 8.138452213 195659753 gyrB other category gyrB Ureaplasma urealyticum serovar 12 str. ATCC 33696 superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Mycoplasmatales;family:Mycoplasmataceae;genus:Ureaplasma;species:Ureaplasma urealyticum; 6.792888875 7.103754499 124022438 sigma_70 Stress Sigma factors Prochlorococcus marinus str. MIT 9303 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 7.529476814 7.591543001 7.698548066 7.783417007 8.081709847 7.991421859 7.610421725 195974604 gyrB other category gyrB Streptococcus equi subsp. zooepidemicus MGCS10565 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus equi; 7.4758283 7.393533451 7.067740414 7.069492339 7.205060442 119964247 pstB Stress Phosphate limitation Arthrobacter aurescens TC1 7.763699603 7.58264971 7.794263395 7.798628705 7.872743856 115253635 iro virulence Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.580931752 7.758511278 7.384857625 7.706950761 110623052 arsB Metal Resistance Arsenic Tsukamurella strandjordii superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella; 7.12531945 7.457331779 7.608756486 6.998066928 7.832181535 7.148958059 7.4993355 7.244598035 74038296 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.195431838 7.264435948 6.859709257 7.013689506 7.644174023 7.409108684 7.524071536 156936079 gyrB other category gyrB Enterobacter sakazakii ATCC BAA-894 7.205067444 7.544392541 7.248601416 7.266796676 7.159693351 7.277114795 220720963 bphA Organic Remediation Aromatics Polycyclic aromatics Variovorax paradoxus S110 7.371346131 7.308427697 7.355018942 7.371540265 7.3500704 7.434589587 109290325 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6.608774337 7.13962879 166364577 pstA Stress Phosphate limitation Microcystis aeruginosa NIES-843 7.214605795 6.864699752 7.075999563 7.182608997 7.472734502 119959613 CopA Metal Resistance Copper Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 7.568095523 7.195991791 7.497413576 7.329097756 7.813401503 7.496795603 125713335 TehB Metal Resistance Tellurium Clostridium thermocellum ATCC 27405 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 7.099172971 7.272960178 6.988256856 7.431879431 127514002 pilin virulence pilin Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 7.09508141 7.275442544 218775034 pheA Organic Remediation Aromatics Other aromatics Alcaligenes sp. OS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes; 7.591306476 7.749636399 8.199430622 7.974502654 7.928039051 7.783050322 7.965945982 226227772 pstC Stress Phosphate limitation Gemmatimonas aurantiaca T-27 superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 8.247172127 7.855955816 8.100141443 8.065030008 7.752980592 7.964932151 149245524 nagG Organic Remediation Aromatics Aromatic carboxylic acid Lodderomyces elongisporus NRRL YB-4239 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Lodderomyces;species:Lodderomyces elongisporus; 7.286305243 6.860328834 110818969 TerZ Metal Resistance Tellurium Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7.096328041 7.319850625 73534137 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 6.856080116 7.363034376 7.151996481 7.519037995 39985125 sigma_70 Stress Sigma factors Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 7.186637023 7.365474283 6.970012297 7.448094964 157373942 cytochrome Energy process Energy process Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 7.257438689 7.363334173 6.592679032 7.419210688 122937811 exaA Organic Remediation Chlorinated solvents Rahnella aquatilis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Rahnella; 7.431447778 7.25906178 19067859 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 7.505973881 7.935118956 7.838742906 8.212808876 7.3611532 8.157363876 8.055298548 7.657821318 24373057 AceB Carbon cycling Carbon degradation others Shewanella oneidensis MR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella oneidensis; 7.239234385 6.936078282 3157736 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 7.494270105 7.701394868 262195767 hrcA Stress Heat shock Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Haliangiaceae;genus:Haliangium;species:Haliangium ochraceum; 7.656040661 7.620436508 7.214293475 7.669613064 259234543 hzo Nitrogen Anammox uncultured planctomycete superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales; 7.234182153 7.332108981 262377138 katE Stress Oxygen stress Acinetobacter lwoffii SH145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter lwoffii; 6.878410435 7.427076415 29139770 amyA Carbon cycling Carbon degradation Starch Salmonella enterica subsp. enterica serovar Typhi Ty2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 8.01119217 7.902538055 7.470110404 7.757113315 7.876965388 7.810896279 7.997337462 7.52664784 118644658 CopA Metal Resistance Copper Burkholderia ambifaria MC40-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 7.788070087 7.462010715 7.226416052 7.342641201 7.686019026 7.438473284 7.346410405 188586486 CopA Metal Resistance Copper Natranaerobius thermophilus JW/NM-WN-LF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Natranaerobiales;family:Natranaerobiaceae;genus:Natranaerobius;species:Natranaerobius thermophilus; 7.081732696 7.814335682 169809928 oxdB Organic Remediation Aromatics Nitoaromatics Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 7.007005812 7.338565153 7.024404508 6.67550154 7.351062797 7.109257524 6.987671528 7.239541077 170144690 silC Metal Resistance Silver Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 7.11833133 7.14383942 6.764289013 7.523703671 6.816996718 6.860833862 7380455 TehB Metal Resistance Tellurium Neisseria meningitidis Z2491 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria meningitidis; 7.316591403 8.119436885 7.916585764 7.722548176 7.603839766 7.863268207 99083153 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.179833148 7.012926323 6.944952141 6.606001052 7.421536252 7.098141056 7.047284837 7.219960658 84686007 ZntA Metal Resistance Zinc Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.723244751 7.472267052 7.265891896 7.245057208 262377068 pilin virulence pilin Acinetobacter lwoffii SH145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter lwoffii; 6.805600893 7.059218366 163800509 iuc virulence aerobactin Vibrio sp. AND4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.177751995 7.180603378 24496479 cellobiase Carbon cycling Carbon degradation Cellulose Fervidobacterium sp. YNP superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Fervidobacterium; 7.382824639 7.529514129 7.393307582 7.71937052 7.695846828 7.864964785 1653871 ppx Phosphorus Phosphorus utilization Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 6.761109304 7.074104379 6.49518821 7.364277069 169814559 iro virulence Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 6.78784401 7.105622811 254293648 sigma_24 Stress Sigma factors Hirschia baltica ATCC 49814 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hirschia;species:Hirschia baltica; 7.279954556 7.608751796 7.225864334 7.038651862 7.020281452 7.464280829 86749031 vanA Carbon cycling Carbon degradation Others Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.50207691 7.592994488 7.426016146 7.8009615 8.101672198 7.694068255 7.623541252 7.820549606 262173915 endochitinase Carbon cycling Carbon degradation Chitin Vibrio mimicus MB-451 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 6.989308129 7.11325269 219997281 CadA Metal Resistance Cadmium Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 7.29437489 6.865672983 17546002 fnr Stress Oxygen stress Ralstonia solanacearum GMI1000 7.236500093 7.22092929 2622397 grpE Stress Heat shock Methanothermobacter thermautotrophicus str. Delta H superkingdom:Archaea;phylum:Euryarchaeota;class:Methanobacteria;order:Methanobacteriales;family:Methanobacteriaceae;genus:Methanothermobacter;species:Methanothermobacter thermautotrophicus; 6.789701718 7.224199271 39937203 fnr Stress Oxygen stress Rhodopseudomonas palustris CGA009 7.256387862 7.285951557 6.942922733 7.459441335 207367122 mnp Carbon cycling Carbon degradation Lignin Lentinula edodes superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Lentinula; 7.344918566 7.208626598 7.137144302 6.695113119 7.467093625 7.136837312 6.944708493 7.485595935 15887771 pstB Stress Phosphate limitation Agrobacterium tumefaciens str. C58 7.349613242 7.607632051 84788256 gyrB other category gyrB Erythrobacter litoralis HTCC2594 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 6.970061923 7.314870465 78356739 hly virulence hemolysin Desulfovibrio desulfuricans subsp. desulfuricans str. G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 7.054213759 7.513060142 94549626 sigma_24 Stress Sigma factors Candidatus Koribacter versatilis Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 7.940156345 7.664629326 8.154140314 89202820 gyrB other category gyrB Bacillus cereus subsp. cytotoxis NVH 391-98 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cytotoxicus; 7.051686078 7.073342432 7.942591666 7.479236774 260591501 glnA Stress Nitrogen limitation Prevotella veroralis F0319 7.025183657 6.858786781 6.909681392 6.703570015 7.361437152 241213555 B_lactamase_C Antibiotic resistance Beta-lactamases Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 7.380806093 7.361139009 7.059109852 7.556641937 7.534584447 112462547 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.500338726 7.18837666 7.148054992 7.562456538 7.388695042 7.224540537 7.327673631 83835964 phdCI Organic Remediation Aromatics Polycyclic aromatics Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 7.056552897 6.979047128 187425848 pstB Stress Phosphate limitation Akkermansia muciniphila ATCC BAA-835 7.875933259 8.010655487 7.789839488 8.368698863 8.14953028 8.227772494 8.059111181 196232031 sigma_24 Stress Sigma factors Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 7.80619697 7.834265528 7.940518647 7.865210785 8.065796046 237686134 obgE Stress Radiation stress Teredinibacter turnerae T7901 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 7.205541285 7.463201278 7.052182722 7.322483129 7.504903288 7.30058214 7.728423658 217385841 CODH Carbon cycling Carbon fixation Burkholderia sp. DNBP20 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.503835169 7.505514093 7.341122939 7.046772857 7.213800002 7.610587819 151360164 linB Organic Remediation Pesticides related compound Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 7.146538001 7.266336707 7.496148324 7.376611532 6.918266758 6.931377319 157847988 sigma_24 Stress Sigma factors Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 7.478111769 7.771007301 7.597570235 7.800049545 8.028980983 8.055588107 7.784605462 167831095 pstB Stress Phosphate limitation Finegoldia magna ATCC 29328 7.380461574 7.115800645 10173489 phoA Stress Phosphate limitation Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 6.868021289 7.467441379 149925595 pimF Organic Remediation Aromatics Aromatic carboxylic acid Limnobacter sp. MED105 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 6.933000492 7.359320617 214034615 nplT Carbon cycling Carbon degradation Starch Carboxydibrachium pacificum DSM 12653 7.085148111 6.715263584 15922725 Blue_copper_protein Bioleaching Sulphur Sulfolobus tokodaii str. 7 7.280041809 6.913928047 7.19151857 7.373048341 225375377 ppk Phosphorus Phosphorus utilization Roseburia inulinivorans DSM 16841 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia inulinivorans; 6.8961536 7.421477564 16506239 nasA Nitrogen Assimilatory N reduction Pseudoalteromonas sp. AEA-2001/4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 7.141800652 7.192847408 281425773 sigma_70 Stress Sigma factors Prevotella oris F0302 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella oris; 7.27802505 6.989857907 46204135 glnA Stress Nitrogen limitation Magnetospirillum magnetotacticum MS-1 7.018255648 7.126439883 148838276 phn Organic Remediation Herbicides related compound Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 7.433931752 7.815853112 156047537 katE Stress Oxygen stress Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 7.654636046 7.3885343 7.431401422 7.298493714 148834326 sigma_70 Stress Sigma factors Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 7.079967368 7.152725413 6.917659834 7.443453321 7.264021711 7.088064685 7.240260327 163670215 hly virulence hemolysin Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 7.274697608 7.444825954 215260965 amoA Nitrogen Nitrification superkingdom:Bacteria; 7.411671284 7.307656697 7.194306874 7.28941443 23128027 ppx Phosphorus Phosphorus utilization Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 7.060955065 7.354857102 7.007743631 7.612603704 15592907 nifH Nitrogen Nitrogen fixation Methanosarcina lacustera superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina; 7.257944173 7.170952608 220922952 SMR_antibiotics Antibiotic resistance transporter Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 7.311755214 7.429816504 7.504909425 7.952525982 186455655 exaA Organic Remediation Chlorinated solvents bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 7.778892114 7.508680132 7.359742459 7.551247021 8.059059902 222106593 cspA Stress Cold shock Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 7.262414279 7.285571625 7.162875272 7.257680477 90415661 linB Organic Remediation Pesticides related compound marine gamma proteobacterium HTCC2207 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.325873994 7.373068364 7.130054516 7.405554776 7.770684502 7.575098627 7.456951205 7.676563706 30138965 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Nitrosomonas europaea ATCC 19718 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas europaea; 7.277436333 7.240741935 7.403069262 6.992782464 7.439661593 7.207685729 158336732 sigma_24 Stress Sigma factors Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;genus:Acaryochloris;species:Acaryochloris marina; 7.239819542 7.038599325 7.160216895 7.05856149 7.244146131 262368529 pstA Stress Phosphate limitation Acinetobacter johnsonii SH046 7.087686236 6.991978228 221734380 pstA Stress Phosphate limitation Agrobacterium vitis S4 7.138170978 7.157279864 6.839098186 7.749922971 115422735 silC Metal Resistance Silver Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 7.289094041 6.969573996 133913228 narG Nitrogen Denitrification Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 7.799126235 7.845241806 94471121 narG Nitrogen Denitrification uncultured bacterium 6.602361434 7.807876505 6.961495248 6.87127408 40740982 endochitinase Carbon cycling Carbon degradation Chitin Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.484581347 7.96852595 7.203966385 7.123783134 7.676580413 15026920 cytochrome_b Bioleaching Electron transport Acidithiobacillus ferrooxidans 7.387791469 7.201266702 206679970 pstB Stress Phosphate limitation Rhodobacterales bacterium HTCC2083 7.108983132 6.903102049 217498390 B_lactamase_C Antibiotic resistance Beta-lactamases Shewanella baltica OS223 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 7.021691587 7.362202465 6.974942961 7.362616851 7.493834577 7.123792099 7.459131995 218885642 cytochrome Energy process Energy process Desulfovibrio vulgaris str. 'Miyazaki F' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 7.610865927 7.503164582 8.012792484 117607785 gyrB other category gyrB Magnetococcus sp. MC-1 superkingdom:Bacteria;phylum:Proteobacteria;genus:Magnetococcus; 7.125379823 7.183403299 6.891230985 7.565323409 154271889 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Ajellomyces capsulatus NAm1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 7.181129128 7.120923113 70606290 ferredoxin_oxidoreductase Bioleaching Electron transport Sulfolobus acidocaldarius DSM 639 6.762071139 6.854481767 118032444 nitA Organic Remediation Aromatics Other aromatics Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.162132049 7.090516121 6.922995186 7.558619718 157085428 MFS_antibiotic Antibiotic resistance transporter Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 6.879564879 7.284722149 7.269571445 7.257813207 270343973 type_III_secretion virulence secretion Dickeya dadantii Ech586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 7.359744233 7.361595628 7.141946672 7.226899784 7.637907649 7.302695495 7.360560387 7.53832057 238492939 MFS_antibiotic Antibiotic resistance transporter Aspergillus flavus NRRL3357 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus flavus; 6.569809778 6.494194982 6.664230029 6.846185823 7.110782564 156933895 TehB Metal Resistance Tellurium Enterobacter sakazakii ATCC BAA-894 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 7.051541838 7.537879373 219675778 linC Organic Remediation Pesticides related compound gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.027615262 7.258910828 7.126135035 7.257865082 239794874 narI Stress Oxygen limitation Desulfovibrio magneticus RS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio magneticus; 7.313075914 6.99605828 7.288467274 7.281268421 23978243 gyrB other category gyrB Pseudanabaena sp. PCC 7367 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Pseudanabaena; 7.469177257 7.240259993 7.129193691 6.998818541 119478299 chnB Organic Remediation Other Hydrocarbons marine gamma proteobacterium HTCC2143 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.007326428 7.097638914 219550451 NiR Nitrogen Assimilatory N reduction Vibrio parahaemolyticus 16 7.271475642 7.260896677 124023781 pilin virulence pilin Prochlorococcus marinus str. MIT 9303 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 6.759631128 7.534463299 119962480 AceA Carbon cycling Carbon degradation others Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 7.400068746 7.272499396 49612440 nasA Nitrogen Assimilatory N reduction Erwinia carotovora subsp. atroseptica SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 6.859706536 7.58319687 7.240920822 6.974529957 7.454452176 48155 mer Metal Resistance Mercury Acidithiobacillus ferrooxidans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus; 7.020507683 7.170360228 118424473 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6.906015295 7.316482899 148654464 sigma_70 Stress Sigma factors Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 7.176384617 7.297959643 7.120106402 7.401426652 7.879390721 7.328286972 7.029899016 6.883200167 148570414 nifH Nitrogen Nitrogen fixation Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 7.202383202 7.621336471 119505384 AceA Carbon cycling Carbon degradation others marine gamma proteobacterium HTCC2080 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.254269352 7.168484148 7.032960106 6.750089471 157285734 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.190449497 7.373795379 89052699 grpE Stress Heat shock Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 7.330957454 7.520972484 7.317964508 7.173491015 7.352043581 7.334340399 7.328831036 187479755 sigma_32 Stress Sigma factors Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 7.507618809 7.448064432 7.090730187 7.416965548 7.799295152 7.449932973 7.241351117 194291937 phn Organic Remediation Herbicides related compound Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 7.73100257 7.718820913 7.610403784 7.814189674 7.398603923 7.607068409 7.409876458 52550529 atzA Organic Remediation Herbicides related compound uncultured archaeon GZfos9E5 superkingdom:Archaea; 6.867030809 7.34428431 37955558 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.19023337 6.908330926 139003239 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.244543139 7.078924467 159890721 amyA Carbon cycling Carbon degradation Starch Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 7.683356555 7.591543001 7.288719594 7.733584851 7.440158447 7.552462415 169633612 CMCI Organic Remediation Aromatics Other aromatics Acinetobacter baumannii SDF superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 7.236248431 7.316240347 6.892919268 7.349366516 35210329 gyrB other category gyrB Alicyclobacillus acidocaldarius subsp. rittmannii superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 7.277203886 7.484913856 6.885552391 7.324729531 7.386453397 7.2343245 118502015 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 8.25764437 8.510663102 7.827290463 8.591770936 8.305148061 8.292704224 8.164641362 224438342 katE Stress Oxygen stress Helicobacter cinaedi CCUG 18818 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter cinaedi; 7.63106765 7.175185196 7.13104073 7.16144315 460976 B_lactamase_A Antibiotic resistance Beta-lactamases Streptomyces lavendulae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.103074794 8.096217302 8.419198925 7.947912144 8.455505907 7.987799763 8.052607288 8.399995331 15602153 mdlB Organic Remediation Aromatics Aromatic carboxylic acid Pasteurella multocida subsp. multocida str. Pm70 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Pasteurella;species:Pasteurella multocida; 6.668557213 6.889934193 7.493965349 238792050 cap virulence capsule Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 7.048641908 7.177023505 81251055 gyrB other category gyrB Nitrosospira sp. KAN8 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira; 6.918103628 7.22399166 160898107 proX Stress Osmotic stress Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.675176424 8.312522134 8.501829266 8.531320289 7.852873248 8.099113803 8.143567934 91200070 sigma_70 Stress Sigma factors Candidatus Kuenenia stuttgartiensis superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;genus:Candidatus Kuenenia; 7.092750201 7.00131956 6.95036831 7.072710573 7.023561783 13249565 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.702989753 7.628931815 8.034602806 7.869658647 7.684203633 28203156 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Clostridium tetani E88 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium tetani; 7.675933959 7.683358802 7.743856176 7.694008543 7.362708785 7.586010714 182677344 sigma_32 Stress Sigma factors Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 7.3264236 7.534524723 6.984221446 7.364288623 7.605787807 7.35897237 7.147813475 88658589 obgE Stress Radiation stress Ehrlichia chaffeensis str. Arkansas superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales;family:Anaplasmataceae;genus:Ehrlichia;species:Ehrlichia chaffeensis; 6.667630883 6.972547272 32476146 xylanase Carbon cycling Carbon degradation Hemicellulose Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 7.142385577 7.522485802 6.837084239 6.766679525 7.283013577 7.342326696 113530894 AmiE Organic Remediation Aromatics Other aromatics Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 7.114085284 6.992512615 213963871 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Capnocytophaga sputigena Capno superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga sputigena; 7.273398397 7.518463514 7.294379777 7.61696342 7.668041485 8.059761696 7.457997866 238719142 xylA Carbon cycling Carbon degradation Hemicellulose Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 7.375077097 7.443664029 219539750 dmsA Organic Remediation Others Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 7.186457165 7.087082298 5881927 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 7.449889289 7.445630349 7.959342843 8.166009411 8.24983042 8.194823434 7.935704127 222451914 CopA Metal Resistance Copper Halorubrum lacusprofundi ATCC 49239 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 7.355144249 7.263101057 7.428465653 7.62483868 255009858 B_lactamase_C Antibiotic resistance Beta-lactamases Bacteroides fragilis 3_1_12 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 7.206659344 7.522466015 6.9992677 7.67073871 7.526327819 7.032134286 156233542 CadA Metal Resistance Cadmium Roseiflexus castenholzii DSM 13941 7.240823787 7.136959697 6.798939622 7.43738477 238764149 AceB Carbon cycling Carbon degradation others Yersinia kristensenii ATCC 33638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia kristensenii; 7.730744695 7.43491885 7.066831939 7.628120088 7.382674016 7.307227829 7.856586358 55978148 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.83612477 7.555781771 99036678 pcaG Organic Remediation Aromatics Other aromatics Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.616506184 7.514969798 7.163725673 7.394091679 8.214012873 7.718721844 7.406824435 7.610930262 4633080 msmABCD Organic Remediation Others Methylosulfonomonas methylovora superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;genus:Methylosulfonomonas; 7.331163517 7.326743042 29160347 exoglucanase Carbon cycling Carbon degradation Cellulose Exidia glandulosa superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Auriculariales;family:Exidiaceae;genus:Exidia; 8.175822203 8.379828785 7.931298132 8.194515082 7.929579798 8.394891108 7.945178504 146742382 adpB Organic Remediation Pesticides related compound Rhodococcus sp. 3008 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7.644921972 7.32902418 7.885421554 7.219070596 7.799153083 164470985 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.226405604 7.142132649 7.331409152 7.465236634 7.195999412 86571530 fnr Stress Oxygen stress Rhodopseudomonas palustris HaA2 6.966318631 7.399749083 7.144398011 7.355237209 13397903 AceA Carbon cycling Carbon degradation others Pichia pastoris superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Pichia; 7.077129053 6.980736168 56785446 phenol_oxidase Carbon cycling Carbon degradation Lignin Trametes sp. 420 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 6.927033349 7.391362332 7.21968915 6.832290531 7.652348522 56963059 cydA Stress Oxygen limitation Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 7.322433432 7.439564898 6.866946179 7.623857006 7.375960293 7.182551977 126717022 BchY other category chlorophyllide reductase Roseobacter sp. CCS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.038889376 6.851702015 91788856 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 7.572982259 7.305139698 7.22716436 7.767340283 7.9902935 7.582109973 7.292667973 91715201 fnr Stress Oxygen stress Shewanella denitrificans OS217 7.257135286 7.012688006 7.324920911 6.603707376 7.059976259 7.262436095 7.220702791 169002638 ChrA Metal Resistance Chromium Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.129898974 7.276004819 170100447 phenol_oxidase Carbon cycling Carbon degradation Lignin Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 7.430099459 7.26914627 7.231495071 7.40386029 7.626015013 7.339296024 242240854 ahpF Stress Oxygen stress Dickeya dadantii Ech703 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 7.366409449 7.340497549 7.370844684 7.489887772 71383840 nasA Nitrogen Assimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.910178273 7.476556157 110282155 dnaK Stress Heat shock Cytophaga hutchinsonii ATCC 33406 6.876316676 6.996336436 90201628 limEH Carbon cycling Carbon degradation Others Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 7.39302029 7.181103425 7.260124818 6.752052008 7.399116802 7.210492481 7.246847508 7.321966957 126629753 narH Stress Oxygen limitation Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 7.03206131 7.401169537 6.900237663 7.62092826 7.116690742 7.306354365 7.412925299 149951314 fnr Stress Oxygen stress Alkaliphilus metalliredigens QYMF 7.1166419 6.96589868 239827399 sigma_70 Stress Sigma factors Geobacillus sp. WCH70 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 6.921466484 7.016455976 6.817583638 7.17418636 77360337 alkK Organic Remediation Others Pseudoalteromonas haloplanktis TAC125 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas haloplanktis; 6.831758876 6.828795561 7.518714141 157373500 dmsA Organic Remediation Others Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 7.302218127 7.28000952 7.326835857 7.303309947 7.392771588 110167636 todF Organic Remediation Others Trichodesmium erythraeum IMS101 7.400636093 7.634027948 7.584615723 6.952607065 124510421 dmsA Organic Remediation Others Shewanella putrefaciens 200 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella putrefaciens; 7.091774269 7.475693627 164688732 TerD Metal Resistance Tellurium Clostridium bartlettii DSM 16795 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bartlettii; 7.027887877 7.198938203 6.877085496 7.381528102 257479559 nplT Carbon cycling Carbon degradation Starch Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 7.55348075 7.749217615 7.626284639 7.084336627 7.754716601 7.170772749 7.182721025 253988780 sigma_24 Stress Sigma factors Photorhabdus asymbiotica superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus; 6.82252807 7.026341424 110834206 CopA Metal Resistance Copper Alcanivorax borkumensis SK2 7.232869627 7.070977758 151975 nifH Nitrogen Nitrogen fixation superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 7.312386537 7.22531122 6.855645605 7.588227035 88643474 dsrA Sulphur sulfite reductase uncultured prokaryote 7.057180843 7.113777593 89156051 CopA Metal Resistance Copper Bacillus weihenstephanensis KBAB4 6.90460161 6.974266356 160363940 CadA Metal Resistance Cadmium Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.38235582 7.7163014 7.125001971 7.182382956 7.306696729 7.031697854 7.166687132 7.46189225 121305733 clpC Stress Protein stress Thermosinus carboxydivorans Nor1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Thermosinus;species:Thermosinus carboxydivorans; 7.711071458 7.683673653 7.466041715 7.692757414 7.718689313 7.445579655 7.549177575 42541301 gyrB other category gyrB Photobacterium profundum superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium; 7.102052488 7.330475359 7.093323531 7.459130419 166244391 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 7.240839325 7.472390144 157850536 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 7.294194386 7.711008585 7.461458156 7.064034966 7.093006458 7.512566498 145965797 katE Stress Oxygen stress Vibrionales bacterium SWAT-3 6.965394929 7.065932732 10432467 TerD Metal Resistance Tellurium Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 6.999167337 7.178594233 7.119748476 7.237013075 193086701 ahpC Stress Oxygen stress Chlorobaculum parvum NCIB 8327 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum parvum; 7.76440217 7.323161124 7.701173795 7.555422584 7.701960827 7.698872623 149187656 pstA Stress Phosphate limitation Vibrio shilonii AK1 6.872530128 6.994666662 172037252 sigma_70 Stress Sigma factors Cyanothece sp. ATCC 51142 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.118648485 7.005703329 45386257 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 6.986545672 7.493410681 156055692 glx Carbon cycling Carbon degradation Lignin Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 7.265509071 7.222845018 3176649 todF Organic Remediation Others Burkholderia sp. PS12 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 7.417988325 7.382426334 7.312436664 7.731401954 7.056637777 7.434851351 190696307 glnA Stress Nitrogen limitation Rhizobium etli CIAT 652 7.098361415 7.053099224 7.416664733 6.938405084 163814146 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Coprococcus eutactus ATCC 27759 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Coprococcus;species:Coprococcus eutactus; 7.463811446 7.640646662 7.378623781 7.582236003 169627989 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium abscessus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.630518884 7.972544793 7.851342423 7.807032079 7.127527477 7.339078924 7.832409107 13751211 PceA Organic Remediation Others uncultured microorganism TCB/7-77 superkingdom:Bacteria; 7.241250158 7.032237306 7.119218634 7.37560951 13487319 gyrB other category gyrB Cycloclasticus sp. N-231B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Cycloclasticus; 7.077813543 7.114348972 12721099 ahpC Stress Oxygen stress Pasteurella multocida subsp. multocida str. Pm70 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Pasteurella;species:Pasteurella multocida; 6.879981516 7.203264245 71735311 ppx Phosphorus Phosphorus utilization Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 7.287042406 7.181184746 7.656814055 7.604761629 8.075776984 7.791104459 7.579268436 56068211 ArsA Metal Resistance Arsenic Bacillus sp. MB24 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.211386124 7.218420441 6.804527902 7.515378452 6.775535774 7.017403978 6.767683598 156081398 alkB Organic Remediation Other Hydrocarbons Geobacillus thermoglucosidasius superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.636253038 7.72155626 164614467 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.569669414 7.392833618 7.49287885 7.876078843 7.999617769 7.602138608 9104972 hly virulence hemolysin Xylella fastidiosa 9a5c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xylella;species:Xylella fastidiosa; 7.275941171 7.498658735 7.232203975 7.637672154 7.889719902 7.872737895 7.52244217 89349878 CopA Metal Resistance Copper Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 7.465710238 7.354734444 7.196800572 7.214132643 7.680416158 7.306836863 7.287361305 7.526463208 34017214 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.151472219 7.276517074 83950587 gyrB other category gyrB Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 7.132080347 7.326489767 7.038644772 7.335027844 7.061131897 7.306488794 146403846 CorC Metal Resistance Cobalt Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.507065995 7.801273115 7.083461392 7.702104941 7.545431357 7.583335383 7.63773302 71733844 pilin virulence pilin Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 7.185713685 7.186487115 6.837713615 7.461102204 6.947341958 7.089717074 7.220823756 184194401 proO Organic Remediation Aromatics Other aromatics Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.219648851 7.300940409 154251442 tfdA Organic Remediation Aromatics Chlorinated aromatics Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 7.173015722 7.678375689 116073464 ppx Phosphorus Phosphorus utilization Synechococcus sp. RS9916 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.256353733 7.467661108 7.322960693 7.356692436 39936822 catechol_B Organic Remediation Aromatics Other aromatics Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 6.949614574 6.841346236 229868620 B_lactamase_C Antibiotic resistance Beta-lactamases Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 7.079978996 6.952896181 110636740 ppx Phosphorus Phosphorus utilization Cytophaga hutchinsonii ATCC 33406 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Cytophaga;species:Cytophaga hutchinsonii; 7.154036653 7.05593265 7.388585192 6.954279653 32967993 phtA Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces vinaceus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 6.951097518 7.62022956 7.415744832 7.270350273 7.489941571 7.246117986 8.082495067 89893081 narH Stress Oxygen limitation Desulfitobacterium hafniense Y51 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 7.32599957 7.387163655 7.528314829 7.348209839 126105517 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 6.891199171 7.098846035 162281282 sox Sulphur Sulphur oxidation Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 7.919059528 7.678448033 7.971778626 7.708247392 258535336 vip virulence virulence protein Pantoea sp. At-9b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 7.39139325 7.121603398 7.493190686 6.929839845 7.312997014 7.241920837 7.48666706 156861181 amyA Carbon cycling Carbon degradation Starch Bacteroides uniformis ATCC 8492 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides uniformis; 7.137048277 7.072673985 189500785 dsrA Sulphur sulfite reductase Chlorobium phaeobacteroides BS1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 7.887958125 7.311638394 7.730471211 7.603185014 7.871598087 30180742 ppx Phosphorus Phosphorus utilization Nitrosomonas europaea ATCC 19718 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas europaea; 7.273821288 7.614135601 7.312263119 7.927240487 158510767 phoB Stress Phosphate limitation Desulfococcus oleovorans Hxd3 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus;species:Desulfococcus oleovorans; 7.729833404 7.701116614 7.789302012 7.426376456 34017158 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.474778139 7.947841233 7.589222156 7.846192371 8.017953675 7.491491327 7.811393279 7.669894109 238707970 katE Stress Oxygen stress Yersinia ruckeri ATCC 29473 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia ruckeri; 7.35201956 7.073606553 6.542535261 7.248419469 224367371 pstS Stress Phosphate limitation Desulfobacterium autotrophicum HRM2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium;species:Desulfobacterium autotrophicum; 7.838572708 7.933531881 8.057491586 7.261156823 7.521591936 7.533578171 8.007725169 127512699 cytochrome Energy process Energy process Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 7.350408276 7.554677301 7.599064149 7.442967371 7.650180782 7.287791252 7.670416482 7.539466965 208936534 dsrB Sulphur sulfite reductase uncultured prokaryote 6.851234623 6.990527363 10175549 cda Carbon cycling Carbon degradation Starch Bacillus halodurans C-125 7.015898836 7.050386245 145595773 endochitinase Carbon cycling Carbon degradation Chitin Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 7.085985444 7.306242091 260630779 pstS Stress Phosphate limitation Jonquetella anthropi E3_33 E1 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Jonquetella;species:Jonquetella anthropi; 7.448676897 7.600533335 7.334755105 7.519042683 269830225 sigma_38 Stress Sigma factors Vibrio alginolyticus 40B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 7.296453313 7.120114849 6.83404605 6.823139379 7.370907911 6.945332038 7.019873733 209908018 TehB Metal Resistance Tellurium Enterobacter cancerogenus ATCC 35316 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 7.42531993 7.65032131 7.155413587 7.440109865 7.756583136 7.525556586 7.66833326 7.695502142 148838968 pstB Stress Phosphate limitation Vibrio shilonii AK1 7.365254724 7.482797623 7.156709879 7.29484078 7.915718204 7.572724017 7.740674527 118504677 TerC Metal Resistance Tellurium Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 7.405272465 7.422644365 148851687 SMR_antibiotics Antibiotic resistance transporter Bacillus sp. SG-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 6.921764618 6.996920198 116665956 pstB Stress Phosphate limitation Methanosaeta thermophila PT 7.270172285 7.103334771 6.806708307 7.532020371 72120675 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.6982728 7.942339274 7.777979823 8.060151288 8.066856044 7.739459562 7.589849659 68057826 nrfA Nitrogen Dissimilatory N reduction Haemophilus influenzae 86-028NP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus influenzae; 7.063806778 6.744781499 27376125 sox Sulphur Sulphur oxidation Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.469308317 7.550845406 222084347 cadBD Metal Resistance Cadmium Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 6.876972314 7.56335554 192806796 mnp Carbon cycling Carbon degradation Lignin Ceriporiopsis sp. MD-1 8.005232282 7.755407352 7.727301466 8.167205414 8.06089915 7.882364618 7.446138185 8.181188885 157377092 cytochrome Energy process Energy process Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 7.326487095 7.23832664 7.163781592 7.327045113 7.34312575 7.393057104 227890357 pstB Stress Phosphate limitation Lactobacillus johnsonii ATCC 33200 7.459914393 7.073488616 158443876 ArsC Metal Resistance Arsenic Faecalibacterium prausnitzii M21/2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Faecalibacterium;species:Faecalibacterium prausnitzii; 7.227124848 7.037920689 229449201 fnr Stress Oxygen stress Bacteroides sp. 2_2_4 6.580912614 7.192471511 262355786 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Bacteroides sp. 2_1_22 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 7.025474017 7.137086539 109290132 contractile_central_tail_tube_protein Bacteria phage STRUCTURAL Aeromonas phage 25 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.199927778 7.38483335 7.181753455 7.691586415 7.208289522 7.173312458 7.582144734 115424442 ChnA Organic Remediation Other Hydrocarbons Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 7.868834006 7.695014253 7.798166596 8.257185129 8.391266988 7.642872746 8.063026931 12667674 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium UMTRAdsr826-16 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 6.757039166 7.47912392 7.549725954 6.964340738 157285662 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 6.948386175 7.559741704 7.078167278 7.570758007 6.969815878 7.459798845 237500730 ara Carbon cycling Carbon degradation Hemicellulose Tolumonas auensis DSM 9187 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Tolumonas;species:Tolumonas auensis; 6.781018619 7.149249009 7.137309426 6.917108492 7.564719078 91699027 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 7.599271185 7.217509803 270343982 type_III_secretion virulence secretion Dickeya dadantii Ech586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 7.699464664 7.768401981 8.362500191 8.098920315 8.047548175 7.776274953 8.254336013 7.935431582 256533494 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 7.093033732 7.203512121 6.970431545 7.234116872 50084879 mdlD Organic Remediation Aromatics Other aromatics Acinetobacter sp. ADP1 7.720256255 7.82454872 91682676 fnr Stress Oxygen stress Rhodopseudomonas palustris BisB5 7.077048065 6.970350648 7.004952775 7.247200643 225194136 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.49913183 7.262344248 7.019045958 6.847684416 7.591185739 6.99388722 7.483193631 60326752 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 6.816294677 6.961859366 6.552311174 7.404068741 32470342 ferredoxin_oxidoreductase Bioleaching Electron transport Acidithiobacillus ferrooxidans 7.584555948 7.606669673 7.282269928 7.702553282 7.693937994 7.518541364 7.622869991 158251700 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 6.811271425 6.836671354 21666428 glnA Stress Nitrogen limitation Blumeria graminis 7.031885712 7.215468251 154293167 nagG Organic Remediation Aromatics Aromatic carboxylic acid Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 7.685813122 7.576429823 7.151726922 7.46739784 7.607234799 7.707448784 7.686299771 7.396744219 85860123 pilin virulence pilin Syntrophus aciditrophicus SB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Syntrophus;species:Syntrophus aciditrophicus; 7.732252223 7.744679697 7.858330418 6.6684441 8.232759566 7.314695749 7.266866795 7.857060644 78364056 SilA Metal Resistance Silver Thiomicrospira crunogena XCL-2 7.387088254 7.29021383 118424394 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium 6.636267605 7.07239963 126628407 pilin virulence pilin Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 6.870440492 7.285811064 7.084861909 6.705329929 198039998 akbF Organic Remediation Aromatics BTEX and related aromatics Burkholderia cenocepacia J2315 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 7.536205472 7.364486174 7.560879326 7.245590299 7.255567497 7.451326747 116062347 alkK Organic Remediation Others Aeropyrum pernix K1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Aeropyrum;species:Aeropyrum pernix; 7.264361931 7.363339759 6.831846579 6.799901702 7.597490253 7.01194494 7.102601871 258512833 cda Carbon cycling Carbon degradation Starch Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 7.431593389 7.613519229 7.575436042 7.902562218 7.788672885 7.747745236 7.760252716 8.175606635 63081926 nosZ Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 7.161272994 7.043466794 7.359593022 6.672862079 7.626600125 6.993877012 7.235844439 256419883 obgE Stress Radiation stress Chitinophaga pinensis DSM 2588 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 7.433937918 7.342361225 7.371744183 7.863585641 7.350338321 7.079686588 148252549 alkK Organic Remediation Others Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.683854778 7.263664385 7.30044111 7.285406269 7.573076392 148260351 UDP_glucose_6_dehydrogenase_EPS Bioleaching EPS Acidiphilium cryptum JF-5 7.035386004 6.696947753 32895044 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.696753217 7.383251057 33239946 sigma_70 Stress Sigma factors Prochlorococcus marinus subsp. marinus str. CCMP1375 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 7.611178103 7.531244069 7.410476481 7.653106049 7.674272746 7.607853336 7.723332336 208009833 phoB Stress Phosphate limitation Aliivibrio salmonicida LFI1238 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Aliivibrio salmonicida; 7.091929281 6.905319103 124601634 obgE Stress Radiation stress Mycobacterium tuberculosis C superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 7.476179006 7.963603121 8.018913505 7.700017401 7.915587082 7.942193714 7.917919202 7.880976914 120609877 sigma_24 Stress Sigma factors Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 7.221174451 7.662357917 7.415636147 7.261592989 7.783232816 7.813144007 7.48312009 8.041915474 123967439 nagG Organic Remediation Aromatics Aromatic carboxylic acid Sphingobium yanoikuyae 6.889189518 7.261885431 7.164950795 7.438620179 260852768 obgE Stress Radiation stress Prevotella tannerae ATCC 51259 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella tannerae; 7.072431998 7.042302708 7.16021187 7.153973307 7.228053137 71555498 katE Stress Oxygen stress Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 7.464371284 7.154767003 7.062724916 7.450156653 7.049885183 148254103 alkK Organic Remediation Others Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.372445103 7.517371462 7.275484566 7.447544133 7.629004529 7.503264841 7.703196114 198259543 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 7.328481477 6.98749432 7.093433935 7.271203294 7.350292419 7.360178281 194017536 TerD Metal Resistance Tellurium Bacillus pumilus ATCC 7061 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pumilus; 7.076814125 7.074899103 83944698 alkB Organic Remediation Other Hydrocarbons Oceanicaulis alexandrii HTCC2633 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis;species:Oceanicaulis alexandrii; 7.49065811 7.343552971 242778085 MFS_antibiotic Antibiotic resistance transporter Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 7.226087863 6.940036252 6.82159335 7.381512115 45443168 iro virulence Yersinia pestis biovar Microtus str. 91001 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia pestis; 7.091335863 7.112013889 6.5238327 7.37503948 37954324 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.146039038 7.210287122 6.957278692 7.281195948 21232112 silC Metal Resistance Silver Xanthomonas campestris pv. campestris str. ATCC 33913 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 7.564145011 7.376000496 7.691023603 7.552131395 119401344 oxdB Organic Remediation Aromatics Nitoaromatics Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7.603101824 7.368353692 251794566 sigma_24 Stress Sigma factors Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.240548622 7.150033389 6.977233677 7.143121617 152980996 cap virulence capsule Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 7.885452686 7.720645283 7.212437344 7.452773864 7.684219615 7.712608528 7.931109627 7.745293417 84702385 hly virulence hemolysin Parvularcula bermudensis HTCC2503 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 7.595629318 7.757161616 8.309448119 7.451144625 8.059889441 258574081 phoA Stress Phosphate limitation Uncinocarpus reesii 1704 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 7.042841941 7.295244699 7.006083468 7.800284217 6.813284621 7.143375177 222440131 pstA Stress Phosphate limitation Labrenzia alexandrii DFL-11 7.55776794 7.548218763 7.997511521 7.371905496 7.518160719 7.841168781 146424728 amoA Nitrogen Nitrification superkingdom:Bacteria; 7.310291187 7.41890247 7.019062158 7.480433177 7.438615723 7.100295608 7.837485037 7.229059828 110823288 oxyR Stress Oxygen stress Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7.571593711 7.646493122 7.600384196 7.846927583 7.835737659 7.729843032 7.575445065 7.588475633 198260670 mannanase Carbon cycling Carbon degradation Hemicellulose Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 7.211084588 7.457952193 7.52477417 7.92918306 162568541 aoxB Metal Resistance Arsenic uncultured bacterium superkingdom:Bacteria; 7.758463177 7.95096751 7.705530679 8.152971938 7.964144998 8.051274894 7.702979172 242240088 pstA Stress Phosphate limitation Dickeya dadantii Ech703 7.322680214 7.646907037 7.183022944 7.652628809 7.037187604 7.309493784 7.544258775 163734419 fnr Stress Oxygen stress Roseobacter litoralis Och 149 7.740755307 7.421649887 261337923 clpC Stress Protein stress Bifidobacterium gallicum DSM 20093 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 7.244754877 7.113651522 188026113 ppk Phosphorus Phosphorus utilization Providencia stuartii ATCC 25827 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia stuartii; 7.044645316 8.173557872 91688363 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.387913678 7.067497514 227503846 narI Stress Oxygen limitation Corynebacterium striatum ATCC 6940 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium striatum; 7.694065971 8.069713394 8.112888913 7.851661707 7.798583052 7.806009643 3157692 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 7.305494655 7.114378128 13473544 glnA Stress Nitrogen limitation Mesorhizobium loti MAFF303099 7.239966961 7.078767567 153955038 fnr Stress Oxygen stress Clostridium kluyveri DSM 555 7.161934767 6.924006358 121998413 nifH Nitrogen Nitrogen fixation Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 7.274959167 7.292821776 7.374466023 7.071412233 7.245138438 7.521617457 7.361333573 122719196 tutFDG Organic Remediation Aromatics BTEX and related aromatics uncultured bacterium superkingdom:Bacteria; 7.270526931 7.937539868 7.473099955 7.485907559 7.693285144 197287252 pap virulence adhesin Proteus mirabilis HI4320 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 7.160078455 7.075240938 220914731 CopA Metal Resistance Copper Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 7.145349848 7.078790943 229326487 SMR_antibiotics Antibiotic resistance transporter Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 7.14319262 7.267462027 139003353 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.276258962 7.326678073 7.045851546 6.993581187 225202475 ureC Nitrogen Ammonification Proteus penneri ATCC 35198 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus penneri; 7.120323217 7.159099156 6.975240839 6.882672041 182630515 T5_genome_internalization_A1 Bacteria phage REPLICATION Enterobacteria phage EPS7 order:Caudovirales;family:Siphoviridae; 6.849627907 7.198472987 6.748877261 7.175322488 167648836 oxyR Stress Oxygen stress Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 7.683500837 8.197874901 7.852157575 8.175433082 7.570527922 8.140830253 7.73369338 153807849 catB Organic Remediation Aromatics BTEX and related aromatics Bacteroides caccae ATCC 43185 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides caccae; 7.120101708 7.247987895 6.874494413 6.732709673 7.248542385 7.337245925 89067857 pulA Carbon cycling Carbon degradation Starch Oceanicola granulosus HTCC2516 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 7.643897703 7.795796973 7.490869684 7.809043228 7.845623708 7.576688351 7.428331383 78188927 CopA Metal Resistance Copper Chlorobium chlorochromatii CaD3 7.060291554 7.494568917 7.158264623 7.176276715 7.688992058 7.54607297 7.449658462 7.725646377 167352995 phoA Stress Phosphate limitation Shewanella halifaxensis HAW-EB4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella halifaxensis; 7.034279115 6.997243256 163811725 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.152202462 7.41211164 7.770881281 7.373258844 7.413573045 7.514497919 7.331197855 116747734 pstC Stress Phosphate limitation Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 7.880585377 7.757869085 7.548993827 7.59635182 7.782956196 7.595680314 7.891662439 224282352 obgE Stress Radiation stress Bifidobacterium bifidum NCIMB 41171 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium bifidum; 7.949502751 7.534954779 7.802704755 8.414694446 8.161395512 8.249458795 8.341999705 70728251 proV Stress Osmotic stress Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8.008832772 8.203349469 7.647126033 7.970641528 8.126326005 7.58966909 8.121572095 7.790317812 254558700 fnr Stress Oxygen stress Methylobacterium extorquens DM4 7.81091469 8.095907241 7.677842311 7.773391314 8.038654823 7.353852722 7.89297979 262311371 pilin virulence pilin Acinetobacter junii SH205 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter junii; 6.965318902 7.188355381 6.687489542 7.388520443 226093602 perR Stress Oxygen stress Brevibacillus brevis NBRC 100599 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus brevis; 7.9153342 7.307710022 187719708 xylA Carbon cycling Carbon degradation Hemicellulose Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.672096385 7.443007745 6.947333362 7.104333744 7.809340502 7.367201457 7.53441092 7.704509596 255260633 sigma_24 Stress Sigma factors Sideroxydans lithotrophicus ES-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Sideroxydans;species:Sideroxydans lithotrophicus; 7.340646771 7.364873395 7.38717157 7.662534091 17385528 narG Nitrogen Denitrification uncultured bacterium 7.659211807 7.495051963 6.945178352 7.561672294 7.204090421 7.703869793 260777917 pstB Stress Phosphate limitation Vibrio coralliilyticus ATCC BAA-450 6.643485178 7.645538573 218131857 sigma_24 Stress Sigma factors Bacteroides eggerthii DSM 20697 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides eggerthii; 7.190146446 7.244955134 7.28735108 7.545568014 7.116913049 7.075988404 7.423674172 116013208 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.387225857 7.230877245 241663757 sigma_24 Stress Sigma factors Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 7.218683757 7.418582248 7.333335046 7.932395937 7.330027686 7.158416876 7.273048696 109702444 sigma_38 Stress Sigma factors Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 6.877072358 7.09762391 169621841 katE Stress Oxygen stress Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 7.263717977 7.769713695 7.633202925 8.273061788 7.115362458 8.048048325 7.36389408 8.158457257 120326078 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 7.091533367 7.419127951 7.208558256 7.235144766 238926154 glnA Stress Nitrogen limitation Selenomonas flueggei ATCC 43531 6.783921426 7.441136749 6.591316877 6.670727062 7.321454242 6.895140944 6.751092018 222443136 ahpF Stress Oxygen stress Staphylococcus capitis SK14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus capitis; 6.773336925 7.013580047 150376381 pcc Carbon cycling Carbon fixation Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 7.390038683 7.341810874 7.355175345 7.570489813 94555900 sigma_24 Stress Sigma factors Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 7.356395387 7.40602884 7.321559241 7.350009446 7.480473788 7.193313364 7.131071752 7.430630484 71037803 pilin virulence pilin Psychrobacter arcticus 273-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter arcticus; 7.110544922 7.342286113 6.995331335 7.145129615 146305938 cytochrome Energy process Energy process Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 7.258269244 7.388290546 7.352272748 7.533613874 7.401586902 83724245 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia solanacearum UW551 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 7.304987159 7.372255588 28975409 lip Carbon cycling Carbon degradation Lignin Ceriporiopsis subvermispora superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Ceriporiopsis; 7.719406236 7.672042346 7.880482039 7.652320804 91190812 type_III_secretion virulence secretion Vibrio alginolyticus 12G01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 7.020942866 6.902008227 7.677276674 221083208 AceB Carbon cycling Carbon degradation others Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 7.168287548 7.419135395 7.915650227 7.696031003 7.408201475 126641265 CopA Metal Resistance Copper Acinetobacter baumannii ATCC 17978 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 7.323594064 7.219430394 261211705 katE Stress Oxygen stress Vibrio sp. RC341 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 6.924941044 6.923031589 78223053 cytochrome Energy process Energy process Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 7.524420665 7.308764732 7.035560846 7.124055821 7.727105788 7.234717726 7.407891776 67159300 nmoA Organic Remediation Aromatics Nitoaromatics Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 7.39613262 7.29991916 7.07477678 7.63347948 7.311860313 7.278430754 7.333768541 145701933 cadmium_resistance_gene Bioleaching Metal Resistance Metallosphaera sedula DSM 5348 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Metallosphaera;species:Metallosphaera sedula; 7.414430671 7.247083424 28918540 nagG Organic Remediation Aromatics Aromatic carboxylic acid Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 7.412322118 7.587752538 89898959 phn Organic Remediation Herbicides related compound Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 7.451392568 7.680993171 218761501 pstS Stress Phosphate limitation Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 7.119214592 6.993627159 6.81669652 6.772770188 7.148426218 114704938 ChrA Metal Resistance Chromium Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 7.852445695 7.859685664 7.719519757 8.330088138 8.777536808 8.171826691 8.116632252 260607100 endochitinase Carbon cycling Carbon degradation Chitin Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 7.427621834 7.623226687 6.993191172 7.537218374 7.71138977 7.85260466 7.885273326 7.571663252 39648334 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.810030148 7.897901285 8.039823352 7.267420954 8.089137677 7.36050389 7.52503828 269103555 obgE Stress Radiation stress Photobacterium damselae subsp. damselae CIP 102761 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium damselae; 8.017767173 7.927007139 7.266768878 7.72188679 7.763607694 8.293901216 8.12113859 56680182 cspA Stress Cold shock Ruegeria pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 7.316715092 7.155087902 7.033030454 7.252283991 7.425719852 7.44072669 7.546487278 2196798 gyrB other category gyrB Shewanella putrefaciens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 7.255863365 6.979723673 7.147799262 7.164731459 7.602583993 7.338257308 7.401636791 47568621 Tet Antibiotic resistance other Bacillus cereus G9241 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 7.195092401 7.641943699 262333116 sigma_24 Stress Sigma factors Rhodothermus marinus DSM 4252 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 7.007893545 7.196602931 6.87314911 7.361755186 51244060 proX Stress Osmotic stress Desulfotalea psychrophila LSv54 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfotalea;species:Desulfotalea psychrophila; 7.774647617 7.437461333 7.626597149 7.872374231 7.693834883 7.781834851 205372819 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bacillus coahuilensis m4-4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coahuilensis; 7.121182172 7.209023467 6.81816199 7.408710337 7.051860139 7.629501222 53715663 tutFDG Organic Remediation Aromatics BTEX and related aromatics Bacteroides fragilis YCH46 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 6.689890673 7.154086745 211591694 phoA Stress Phosphate limitation Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 7.024737704 7.248024389 7.117613008 7.175702917 7.542306654 7.087795559 7.069658575 196111793 B_lactamase_C Antibiotic resistance Beta-lactamases Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 6.969572595 7.233992275 7.169672995 7.347256757 6.917080115 116250444 pcpA Organic Remediation Aromatics Chlorinated aromatics Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.56467209 7.749334616 7.864135749 7.48102456 34557497 ZntA Metal Resistance Zinc Wolinella succinogenes DSM 1740 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Wolinella;species:Wolinella succinogenes; 7.370021091 7.629523938 7.891757728 7.838735743 86138909 phoB Stress Phosphate limitation Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.101952236 7.562225292 7.267658979 7.506763192 118740910 dmsA Organic Remediation Others Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 7.189922324 7.359282358 7.404257248 6.824052106 7.791855169 18161592 MFS_antibiotic Antibiotic resistance transporter Pyrobaculum aerophilum str. IM2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum aerophilum; 7.356689981 7.31737728 7.169907804 7.520395659 262282372 pstB Stress Phosphate limitation Streptococcus sp. 2_1_36FAA 7.04041547 7.009410207 16611863 rubisco Carbon cycling Carbon fixation Nitrosospira sp. AF superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira; 7.317625119 7.253178621 7.347938082 7.250412894 7.281713636 7.287383832 7.137936471 7.40662504 7688311 dehH Organic Remediation Chlorinated solvents Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 7.130525893 7.396295389 7.178886105 6.904091503 7.533674876 121495606 narG Nitrogen Denitrification uncultured bacterium 7.28439177 7.419205017 7.1133209 7.462331081 7.312830232 7.146745172 165880005 exoglucanase Carbon cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 6.748054907 7.172014913 26553646 obgE Stress Radiation stress Mycoplasma penetrans HF-2 superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Mycoplasmatales;family:Mycoplasmataceae;genus:Mycoplasma;species:Mycoplasma penetrans; 7.199745205 6.863995193 262036957 amoA Nitrogen Nitrification superkingdom:Archaea; 6.821362944 7.641429736 6.949639657 6.732450181 118436544 pimF Organic Remediation Aromatics Aromatic carboxylic acid Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 7.113925669 7.241302938 7.077181041 7.207875306 7.325378531 223519624 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Ricinus communis superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Streptophyta;order:Malpighiales;family:Euphorbiaceae;genus:Ricinus; 7.055045253 7.246461071 125974109 phoB Stress Phosphate limitation Clostridium thermocellum ATCC 27405 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 6.935400508 6.984609964 255343426 ahpC Stress Oxygen stress Pedobacter heparinus DSM 2366 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter;species:Pedobacter heparinus; 7.422311047 6.937761202 227069631 NiR Nitrogen Assimilatory N reduction uncultured archaeon 7.125224363 7.533239278 7.517282876 7.492618694 7.210270776 7.326859067 198267145 sigma_70 Stress Sigma factors Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 8.090336331 7.96852103 7.894889794 7.941740497 8.283188841 30248192 Mex Antibiotic resistance transporter Nitrosomonas europaea ATCC 19718 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas europaea; 7.177935999 7.34369878 89901565 narH Stress Oxygen limitation Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 7.556701502 7.472685364 7.15395997 7.538483134 192361483 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 6.957206031 7.33177119 114334978 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Shewanella frigidimarina NCIMB 400 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella frigidimarina; 7.323103475 7.229730196 45386185 narG Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 8.407140042 8.609869039 8.89743423 8.639170099 8.19007031 8.765596413 8.759568655 189347113 pstC Stress Phosphate limitation Chlorobium limicola DSM 245 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium limicola; 7.3987122 7.386750423 7.521657437 7.087482784 7.844371839 225173870 pstC Stress Phosphate limitation Desulfonatronospira thiodismutans ASO3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfonatronospira;species:Desulfonatronospira thiodismutans; 7.0060549 7.206331996 71039177 CopA Metal Resistance Copper Psychrobacter arcticus 273-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter arcticus; 7.3030489 7.187766962 6.924165295 7.630587711 73538849 pcaG Organic Remediation Aromatics Other aromatics Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.545330685 7.186905094 7.132329607 7.876345348 19909667 gyrB other category gyrB bacterium PC4 superkingdom:Bacteria; 7.683653667 7.915607295 7.984699847 7.63187975 10956977 akbF Organic Remediation Aromatics BTEX and related aromatics Novosphingobium aromaticivorans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 7.825892743 7.499470966 7.821441592 157848571 pilin virulence pilin Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 7.164793905 7.364731691 6.754305267 7.015567296 7.590384735 7.171019995 7.064349412 251808898 pstB Stress Phosphate limitation Gallionella ferruginea ES-2 7.748197028 7.544236511 7.781238879 7.77255582 7.582128175 8.035448798 7.948259349 77378661 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.187845289 7.268546683 7.263208402 7.516534384 25027551 ureC Nitrogen Ammonification Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 7.239168857 7.206737301 7.47483166 222082425 nmoA Organic Remediation Aromatics Nitoaromatics Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.660038578 7.558898431 7.59541797 7.589481566 7.888991393 32892039 nitA Organic Remediation Aromatics Other aromatics Alternaria brassicicola superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Alternaria; 6.828156484 7.037935966 6.608474541 7.182055207 116102389 pstB Stress Phosphate limitation Pediococcus pentosaceus ATCC 25745 7.044376916 6.958580398 238784845 ureC Nitrogen Ammonification Yersinia bercovieri ATCC 43970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 7.444638536 7.654182946 6.794828741 7.319253794 7.837809007 7.045783704 228470856 clpC Stress Protein stress Porphyromonas uenonis 60-3 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas;species:Porphyromonas uenonis; 7.334443762 7.237117581 7.619062232 7.605039315 7.500117258 170791240 RNA_dependent__RNA_polymerase Bacteria phage REPLICATION Enterobacteria phage FI family:Leviviridae;genus:Allolevivirus;species:Enterobacteria phage FI sensu lato; 7.110106764 7.121412942 6.666501754 7.4101469 6322345 cellobiase Carbon cycling Carbon degradation Cellulose Saccharomyces cerevisiae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Saccharomyces; 6.829923458 6.972217526 77359848 bphC Organic Remediation Aromatics Polycyclic aromatics Pseudoalteromonas haloplanktis TAC125 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas haloplanktis; 7.329903778 7.808050892 7.601770153 7.436825987 7.744914835 7.793208882 53757324 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 7.39823279 7.647978228 7.350085755 7.535890312 44729 mcrA Carbon cycling Methane Methane production Methanococcus voltae superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanococcaceae;genus:Methanococcus; 7.165399331 7.227999901 251857025 oxyR Stress Oxygen stress Prevotella melaninogenica ATCC 25845 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella melaninogenica; 7.205462116 6.872103536 112800058 mer Metal Resistance Mercury Campylobacter concisus 13826 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter concisus; 7.310059634 7.348497399 7.884805126 7.618125891 7.814973189 7.915489214 7.813828677 262164379 groEL Stress Heat shock Vibrio mimicus VM223 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 7.298839518 7.321550462 6.965329572 6.956456765 7.692387664 7.531546926 7.395476432 116196942 tfdA Organic Remediation Aromatics Chlorinated aromatics Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 7.032620367 7.287191887 7.415945866 6.777683682 7.215698673 7.57806989 260172070 amyA Carbon cycling Carbon degradation Starch Bacteroides sp. D2 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 7.05390807 7.349355787 88714090 sigma_24 Stress Sigma factors Flavobacteriales bacterium HTCC2170 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales; 6.978139195 7.120875153 262224416 pilin virulence pilin alpha proteobacterium HIMB114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales; 7.192060891 6.92880559 258406014 sigma_70 Stress Sigma factors Desulfohalobium retbaense DSM 5692 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium;species:Desulfohalobium retbaense; 7.951470142 7.987989487 7.953656873 7.4364266 8.224755716 8.609170614 8.43151347 114738497 gyrB other category gyrB Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 8.25185822 7.768434217 8.009910384 8.282704442 8.366053073 8.216043929 8.320584541 221572145 amyA Carbon cycling Carbon degradation Starch Thermotoga neapolitana DSM 4359 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga;species:Thermotoga neapolitana; 7.034601274 7.418793517 7.226472323 7.212701532 41582601 ArsC Metal Resistance Arsenic Lactobacillus johnsonii NCC 533 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus johnsonii; 6.769611149 6.969690743 6.805198508 7.529022431 171698330 obgE Stress Radiation stress Cyanothece sp. ATCC 51142 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.151676661 7.177980404 192282948 phn Organic Remediation Herbicides related compound Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.334285774 7.757411502 7.388367423 7.715831405 7.725061106 7.71226532 7.709959646 116195580 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 7.373033661 7.577569412 7.1309146 7.209698289 7.602932835 7.120213317 7.678041014 37360775 endochitinase Carbon cycling Carbon degradation Chitin Nocardiopsis sp. F96 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis; 7.275395732 7.124949186 6.812814055 7.577630315 162455241 ahpC Stress Oxygen stress Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 7.638265777 7.273730023 7.498531141 7.723558731 7.94737735 75675649 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Nitrobacter winogradskyi Nb-255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 7.255326914 7.190403479 145215848 pcc Carbon cycling Carbon fixation Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 7.547229282 7.619701421 7.399237263 7.722789316 7.236537389 7.434851351 206603622 pstB Stress Phosphate limitation Leptospirillum sp. Group II '5-way CG' 7.266563075 7.250796721 6.928422211 7.498955492 7.105666762 6.880269243 114565095 cytochrome Energy process Energy process Shewanella frigidimarina NCIMB 400 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella frigidimarina; 7.140570144 7.679144784 7.363986064 7.206884616 7.409886313 7.26587229 7.511916831 218518867 pstC Stress Phosphate limitation Acidithiobacillus ferrooxidans ATCC 23270 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 7.025827376 7.437306465 7.601458835 7.459785145 7.699430645 7.180316473 7.431655121 222106252 nmoA Organic Remediation Aromatics Nitoaromatics Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 7.414806658 7.248794311 7.230478982 7.435081334 227996648 AceA Carbon cycling Carbon degradation others Kangiella koreensis DSM 16069 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Kangiella;species:Kangiella koreensis; 7.195580183 6.988548903 7.01237697 7.139102509 83404788 nirS Nitrogen Denitrification uncultured organism 6.916851716 7.152805627 49037499 mdlD Organic Remediation Aromatics Other aromatics Xanthomonas campestris superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas; 7.034916932 7.171094434 7.554203753 118582234 hydrogenase Energy process Energy process Shewanella decolorationis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 7.214348201 7.406341399 7.309543051 7.33353392 7.469130243 239822367 AceA Carbon cycling Carbon degradation others Ochrobactrum intermedium LMG 3301 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 7.405754506 7.884891227 7.760526892 7.66464825 7.847075278 7.645312544 8.007880378 7.960604756 33862729 sigma_70 Stress Sigma factors Prochlorococcus marinus str. MIT 9313 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 7.472782896 7.185590226 7.749071717 126224536 akbF Organic Remediation Aromatics BTEX and related aromatics Burkholderia pseudomallei 668 7.22854637 7.446934625 7.375363379 7.429095244 157323537 pstB Stress Phosphate limitation Serratia proteamaculans 568 7.225431126 7.366406227 7.288182687 7.292635984 7.470479716 7.194906022 7.496035541 7.871598087 218716793 vdh Carbon cycling Carbon degradation Others Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 6.743646507 7.432533874 7.300839537 6.999364238 242791105 AceA Carbon cycling Carbon degradation others Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 7.229679324 7.207576888 39934855 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.738196283 7.579535068 7.485919749 7.435469563 7.752245593 91200821 bco Organic Remediation Aromatics Aromatic carboxylic acid Candidatus Kuenenia stuttgartiensis superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;genus:Candidatus Kuenenia; 6.807304441 7.073152834 52785748 glnR Stress Nitrogen limitation Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 7.328542566 7.120811387 42475488 bphB Organic Remediation Aromatics Polycyclic aromatics Rhodococcus rhodochrous superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7.757261903 7.876222892 7.524566849 7.514904212 23095775 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 6.62719971 7.042999189 150400987 trzA Organic Remediation Herbicides related compound Methanococcus aeolicus Nankai-3 7.068747561 7.099843059 7.00854942 6.944837158 262219533 fnr Stress Oxygen stress Grimontia hollisae CIP 101886 7.414527258 7.368462449 7.092938824 6.939062224 7.34855721 114740222 katE Stress Oxygen stress Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 7.712244476 7.543421165 7.730003663 7.072264715 7.363605282 6.99393826 8.001829956 186460516 pcpB Organic Remediation Herbicides related compound bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 7.117865399 7.120712896 226088608 pilin virulence pilin Gemmatimonas aurantiaca T-27 superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 8.105234877 7.852200201 8.121457962 7.785964786 8.075224789 7.792010179 7.944039773 115516562 fnr Stress Oxygen stress Rhodopseudomonas palustris BisA53 7.184751843 7.435553861 6.993877012 7.307949456 154158245 phoB Stress Phosphate limitation Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 7.407352271 7.186810678 7.078898121 7.16482505 7.657223597 7.170030552 7.264766801 255105608 pstB Stress Phosphate limitation Thalassiobium sp. R2A62 7.292270986 7.266877833 6.979399482 6.671125864 7.591874899 7.342501094 7.079002423 153795312 Al Metal Resistance Aluminum Ruminococcus gnavus ATCC 29149 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus gnavus; 7.376898853 7.161002524 251753540 obgE Stress Radiation stress Pectobacterium carotovorum subsp. carotovorum PC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 7.768358895 7.656300363 7.042009118 7.532270561 7.537325385 7.635886762 7.503094073 34103368 sigma_24 Stress Sigma factors Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 7.863029891 7.629452102 7.502807275 7.47652348 7.653589356 7.848075195 7.690547795 121704090 BpH Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7.321917415 7.619766091 7.309361707 78361323 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Shewanella sp. PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 6.955630887 7.093995029 6.751849094 7.43997079 6.951805929 6.748342379 89078475 BADH Organic Remediation Aromatics Other aromatics Lactobacillus reuteri JCM 1112 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus reuteri; 6.934036455 7.213019597 7.002704691 7.177270758 167852912 oxyR Stress Oxygen stress Haemophilus parasuis 29755 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus parasuis; 7.204495972 6.925356425 88758850 silC Metal Resistance Silver Acinetobacter baumannii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 7.026307333 7.073211158 6.534002308 7.456640341 148554531 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 7.312320399 7.25727821 6.842711442 7.330266903 7.258340361 7.086316496 149807995 iro virulence Moritella sp. PE36 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Moritellaceae;genus:Moritella; 7.262796721 6.979119793 218357223 ZitB Metal Resistance Zinc Escherichia fergusonii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 6.765405902 7.472458051 6.93416618 7.291989078 91225582 cap virulence capsule Vibrio alginolyticus 12G01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 7.916009525 7.152486713 7.272403841 7.560101959 211960047 nirS Nitrogen Denitrification Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 6.960257361 7.091420628 189368464 dmsA Organic Remediation Others Escherichia coli O157:H7 str. EC4501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 7.194407173 7.229422283 6.876080305 7.222689648 7.371396548 170017459 gyrB other category gyrB Leuconostoc citreum KM20 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc citreum; 7.031036618 7.107129785 165880033 exoglucanase Carbon cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.802056692 7.726394864 7.646008741 8.178609759 7.986477928 7.94739038 154160083 obgE Stress Radiation stress Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 7.167217719 7.219609359 7.316543407 7.800014544 116512417 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Lactococcus lactis subsp. cremoris SK11 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Lactococcus;species:Lactococcus lactis; 7.131765105 7.339628835 207087772 czcA Metal Resistance "Cadmium,Cobalt,Zinc" beta proteobacterium KB13 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 7.284272826 7.308913619 7.413590721 7.07667974 7.701868084 7.213094563 7.166399384 7.615447492 237805259 fnr Stress Oxygen stress Pseudomonas syringae pv. oryzae str. 1_6 8.064353046 7.84236222 7.725222138 8.037729519 8.082155424 7.712708171 111065927 ara_fungi Carbon cycling Carbon degradation Hemicellulose Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 6.316653868 6.772031572 7.036879259 7.220888378 219848695 glnA Stress Nitrogen limitation Chloroflexus aggregans DSM 9485 6.991668903 7.103482876 6.829107686 7.445757747 254249990 MFS_antibiotic Antibiotic resistance transporter Burkholderia cenocepacia PC184 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 7.612837674 7.61644956 7.769146418 6.941709449 7.621117269 7.306249797 149194057 glnA Stress Nitrogen limitation Caminibacter mediatlanticus TB-2 7.083835617 6.931728272 6.74099331 7.343511628 213966361 pimF Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium amycolatum SK46 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium amycolatum; 8.196891774 7.990483296 8.096624317 8.201248004 8.259221642 8.004852656 7.937105694 8.113786302 253576978 ara Carbon cycling Carbon degradation Hemicellulose Paenibacillus sp. oral taxon 786 str. D14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 7.451579314 7.647075661 209500763 nmoA Organic Remediation Aromatics Nitoaromatics Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.106421934 7.231223558 190687649 pbrT Metal Resistance Lead Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 7.452686633 7.52914189 7.653803574 6.98755182 7.483517532 68262962 alkK Organic Remediation Others Corynebacterium jeikeium K411 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 7.439743723 6.882390737 7.359192421 7.463440092 167355958 SMR_antibiotics Antibiotic resistance transporter Shewanella halifaxensis HAW-EB4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella halifaxensis; 7.000098592 7.318246763 114772898 CorC Metal Resistance Cobalt alpha proteobacterium HTCC2255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.085475965 6.842453368 112822664 ahpC Stress Oxygen stress Haemophilus somnus 129PT superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Histophilus;species:Histophilus somni; 7.22955143 7.153224683 6.981440136 7.571417918 76166398 ppx Phosphorus Phosphorus utilization Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 7.459447329 7.698194219 118658638 Catechol Organic Remediation Aromatics Other aromatics Burkholderia multivorans ATCC 17616 7.166522769 7.184914929 6.942231847 7.681209822 89899391 pstB Stress Phosphate limitation Rhodoferax ferrireducens T118 7.922336122 7.63482033 7.815074978 8.17686734 8.234217558 7.973239808 8.018636991 77378779 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.204287109 7.223707787 7.920201157 9627447 helicase_family_4 Bacteria phage REPLICATION Enterobacteria phage T7 7.238109424 7.380854518 163751760 hly virulence hemolysin Shewanella benthica KT99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella benthica; 7.124324772 7.234626555 6.655475311 7.065796549 7.270457654 7.076818859 7.129053946 7.545523336 167588489 bphF1 Organic Remediation Aromatics Polycyclic aromatics Burkholderia ubonensis Bu 7.519796531 7.719021473 7.319987771 7.497320017 7.639381261 7.429050259 7.591168288 60280049 cda Carbon cycling Carbon degradation Starch uncultured murine large bowel bacterium BAC 31B superkingdom:Bacteria; 6.989943461 7.215761356 6.837704379 7.355291654 6.89508056 7.34588634 268317218 pcc Carbon cycling Carbon fixation Rhodothermus marinus DSM 4252 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 7.756023902 7.967784151 7.576412883 8.075118402 7.654639594 7.804793359 7.796581414 240102264 pstA Stress Phosphate limitation Thermococcus gammatolerans EJ3 7.556128539 7.935246906 7.706140513 6.90106649 7.319190562 7.834040814 8.127799088 227508182 NiR Nitrogen Assimilatory N reduction Lactobacillus brevis subsp. gravesensis ATCC 27305 7.084742212 7.239908598 6.992204027 7.549730923 7.041198585 6.908311186 268592309 pstA Stress Phosphate limitation Providencia rettgeri DSM 1131 7.737092471 7.793408173 7.994427224 7.323095783 8.018990566 7.452762499 7.986598987 8.31266841 92393527 pimF Organic Remediation Aromatics Aromatic carboxylic acid Psychrobacter cryohalolentis K5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter cryohalolentis; 7.140547968 7.110100748 118022840 TehB Metal Resistance Tellurium Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 8.038826378 8.062808632 32307919 narG Nitrogen Denitrification uncultured bacterium 7.004134841 7.195563693 260173976 katE Stress Oxygen stress Bacteroides sp. D2 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 7.13417892 7.119614998 88815620 obgE Stress Radiation stress marine actinobacterium PHSC20C1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 8.225374406 8.012877757 8.217482589 8.020990512 8.257008692 8.196241595 8.192491811 226185821 AceB Carbon cycling Carbon degradation others Rhodococcus erythropolis PR4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 7.073871894 6.900155974 6.890352915 7.238948299 150019336 cellobiase Carbon cycling Carbon degradation Cellulose Clostridium beijerinckii NCIMB 8052 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium beijerinckii; 7.53943765 7.592741794 157317466 narH Stress Oxygen limitation Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 6.993326042 7.186252511 225174314 fnr Stress Oxygen stress Dethiobacter alkaliphilus AHT 1 7.333399933 6.910345843 74038478 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 6.84888704 7.665249234 160366214 pilin virulence pilin Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 6.781874737 7.415301367 89347365 hly virulence hemolysin Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 6.996337762 7.014768277 6.624923584 7.483395444 146401817 copper_resistance_gene Bioleaching Metal Resistance Acidiphilium cryptum JF-5 7.057817058 7.172033195 6.965326815 7.406785506 27356243 MFS_antibiotic Antibiotic resistance transporter Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.56542584 7.226594547 7.529170902 7.282193462 71725918 gyrB other category gyrB Exiguobacterium undae superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 7.561417962 7.577206514 7.294876572 7.588867386 7.832051238 7.671365328 7.447021039 7.262336837 31505660 DNA_polymerase_type_I Bacteria phage REPLICATION Enterobacteria phage SP6 order:Caudovirales;family:Podoviridae;genus:SP6-like viruses; 7.069163107 7.196752549 259502519 ctsR Stress Protein stress Lactobacillus antri DSM 16041 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus antri; 7.219113935 7.253449645 7.080420488 7.809247501 70990048 xylanase Carbon cycling Carbon degradation Hemicellulose Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 7.398424426 7.838656745 8.020131572 7.570972165 7.569864521 7.636434555 8.084507817 221535422 akbF Organic Remediation Aromatics BTEX and related aromatics Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 7.41236428 7.719179451 7.581664931 7.365922809 59712161 nrfA Nitrogen Dissimilatory N reduction Vibrio fischeri ES114 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Vibrio fischeri; 7.217834623 7.416973516 7.259591347 6.998487027 7.752218149 7.154205131 7.356782448 7.841530053 262375398 ahpC Stress Oxygen stress Acinetobacter lwoffii SH145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter lwoffii; 7.183372818 6.829698926 71020047 pheA Organic Remediation Aromatics Other aromatics Ustilago maydis 521 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Ustilaginomycetes;order:Ustilaginales;family:Ustilaginaceae;genus:Ustilago;species:Ustilago maydis; 7.263820219 7.246483169 7.013682912 7.134406606 7.374728657 7.252467571 7.33888634 94551084 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Acidobacteria bacterium Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 7.057900242 7.230274982 76788373 glnR Stress Nitrogen limitation Streptococcus agalactiae A909 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus agalactiae; 7.275307822 7.385348169 7.301507669 7.45277855 7.69871344 7.5910838 7.464433492 7.588375747 12722940 CadA Metal Resistance Cadmium Lactococcus lactis subsp. lactis Il1403 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Lactococcus;species:Lactococcus lactis; 6.82456074 7.287791973 6.554029902 7.483360531 6.826449544 6.95150507 124515808 formate_hydrogenlyase_complex Bioleaching Carbon fixation Leptospirillum sp. Group II UBA 7.467261879 7.073288032 158111562 sigma_70 Stress Sigma factors Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 6.786603781 7.19692412 262377348 MATE_antibiotic Antibiotic resistance transporter Acinetobacter lwoffii SH145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter lwoffii; 7.037919916 7.015507101 218291427 pcc Carbon cycling Carbon fixation Alicyclobacillus acidocaldarius LAA1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 6.918186947 7.161245256 86165697 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Marinomonas sp. MED121 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 6.894011711 7.227250042 148244462 ArsC Metal Resistance Arsenic Candidatus Vesicomyosocius okutanii HA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:Calyptogena okutanii thioautotrophic gill symbiont; 7.11520267 7.053963825 6.652075856 7.314008434 91776569 obgE Stress Radiation stress Methylobacillus flagellatus KT superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 7.344107788 7.390582944 7.195271824 7.365890136 227989417 AceB Carbon cycling Carbon degradation others Meiothermus silvanus DSM 9946 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 7.175186639 7.226305933 281425837 sigma_24 Stress Sigma factors Prevotella oris F0302 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella oris; 7.584688462 7.347924707 6.903411045 7.127403551 7.429381211 7.144007917 7.297424812 29377069 trzN Organic Remediation Herbicides related compound Enterococcus faecalis V583 6.700557243 7.050033552 2632575 TerZ Metal Resistance Tellurium Bacillus subtilis subsp. subtilis str. 168 6.966160306 6.925210898 134053740 proV Stress Osmotic stress Desulfotomaculum reducens MI-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum reducens; 7.273476013 7.936331233 8.054096481 7.066344033 8.175969717 7.363099167 7.459556194 8.150798836 76781158 linC Organic Remediation Pesticides related compound Microbacterium sp. ITRC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium; 7.504982934 7.528966146 7.685945569 6.822357636 8.039017762 7.196311501 7.620610494 121517074 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Candidatus Desulfococcus oleovorans Hxd3 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus;species:Desulfococcus oleovorans; 8.329506492 8.249643493 8.065442736 7.839102945 7.894247961 7.742535254 7.933074734 193213224 ahpC Stress Oxygen stress Chlorobaculum parvum NCIB 8327 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum parvum; 7.070821634 7.321143811 121720096 BpH Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7.223653909 7.243197748 7.52281003 7.331751549 7.331282677 183206458 groEL Stress Heat shock Candidatus Portiera aleyrodidarum superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Candidatus Portiera; 6.998969981 7.303169866 7.195873527 7.015596319 260060837 xylA Carbon cycling Carbon degradation Hemicellulose Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 7.648646791 7.517541635 7.866842199 7.709234741 8.034030577 66870094 amyA Carbon cycling Carbon degradation Starch Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 6.870958796 7.131058637 6.661566422 6.65275274 11496145 mer Metal Resistance Mercury Pseudoalteromonas haloplanktis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 7.414696538 7.68375066 150384767 ChrA Metal Resistance Chromium Victivallis vadensis ATCC BAA-548 superkingdom:Bacteria;phylum:Lentisphaerae;family:Victivallaceae;genus:Victivallis;species:Victivallis vadensis; 7.292004511 7.391586958 7.264955788 7.042239852 157679427 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.629589584 7.998628445 7.181720664 7.706011096 7.294781764 7.0572416 194310873 amyA Carbon cycling Carbon degradation Starch Prosthecochloris aestuarii DSM 271 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Prosthecochloris;species:Prosthecochloris aestuarii; 7.306114329 7.494050663 7.290772 7.8617426 7.624666433 7.702863485 196482298 tfdA Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 7.105446686 7.466791654 39649119 MFS_antibiotic Antibiotic resistance transporter Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.098098482 7.52225253 169825953 katE Stress Oxygen stress Lysinibacillus sphaericus C3-41 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Lysinibacillus;species:Lysinibacillus sphaericus; 6.904850586 7.595648121 153007484 gyrB other category gyrB Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 7.576241358 7.588768337 7.439318343 7.708776202 219547836 CopA Metal Resistance Copper Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.022618861 7.181843348 7.660751336 7.40873334 7.215003653 7.29006369 94471193 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 6.926354117 7.206151643 7.224078416 7.380057387 55978080 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.220723233 6.997732749 6.904584943 7.531888638 85697051 iro virulence Nitrobacter sp. Nb-311A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter; 7.402812097 7.422558728 7.209250791 7.444154491 95108909 CopA Metal Resistance Copper Pseudomonas superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae; 7.326128208 7.283661894 1742384 narI Stress Oxygen limitation Escherichia coli str. K12 substr. W3110 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 7.357956707 6.915795466 119446851 mer Metal Resistance Mercury Alteromonadales bacterium TW-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales; 7.042403831 6.706998016 7.440754033 7.186556547 7.045774012 199591982 glnR Stress Nitrogen limitation Lactobacillus rhamnosus HN001 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 7.313272668 7.550019488 7.627639592 7.216333564 7.476370928 7.255828307 7.491192373 7.633058197 49531069 TerD Metal Resistance Tellurium Acinetobacter sp. ADP1 7.107212723 7.245377943 6.624560027 7.302733933 190890925 B_lactamase_A Antibiotic resistance Beta-lactamases Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.388016405 7.596662562 7.077694994 7.399380834 7.514258497 7.535836878 73541357 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.360338859 7.19454652 7.78913914 7.482312398 85820495 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Tenacibaculum sp. MED152 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Polaribacter; 6.652340472 6.856325173 118660526 vanA Carbon cycling Carbon degradation Others Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 7.954319843 8.295110148 8.23209976 8.182827067 8.032835226 15156762 alkK Organic Remediation Others Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.515002655 7.448906209 56678561 pstB Stress Phosphate limitation Ruegeria pomeroyi DSS-3 7.418500303 7.621792361 7.331184936 7.333206281 7.602550013 77384166 iro virulence Pseudomonas fluorescens Pf0-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.674151966 7.686687462 7.600501655 7.198818114 7.255419065 7.270219891 84665153 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.073618168 7.357752685 90020725 pilin virulence pilin Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 7.64733451 7.536204339 7.312098874 7.814546983 258639030 AceA Carbon cycling Carbon degradation others Pantoea sp. At-9b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 7.373042403 7.630733933 7.541115572 7.087064803 7.186123714 7.595825705 7.805123963 148653417 CopA Metal Resistance Copper Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 7.410352831 7.491360366 6.796323976 6.922059865 7.578345557 6.949385938 7.196086361 71736858 AceA Carbon cycling Carbon degradation others Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 7.300124971 7.551348586 6.98405411 7.472353037 7.917369274 7.85029516 7.937780068 99037957 glnA Stress Nitrogen limitation Ruegeria sp. TM1040 7.897365052 8.224374986 8.207330943 7.652378279 8.278938582 7.863288043 7.825171296 7.891950391 91693537 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.038373776 7.035677581 2149411 B_lactamase Antibiotic resistance Beta-lactamases Pseudomonas aeruginosa superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.510717993 7.45651047 7.404565002 7.94989344 188143891 glnA Stress Nitrogen limitation Helicobacter pylori Shi470 7.475716221 7.371073737 261406264 nplT Carbon cycling Carbon degradation Starch Geobacillus sp. Y412MC10 7.658651001 7.537928304 7.172891066 7.512424734 7.584450338 7.563775536 7.557047576 184196356 amyA Carbon cycling Carbon degradation Starch Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.491386051 7.783138938 7.610354587 7.176245848 144905813 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6.971423752 7.170971437 804821 rubisco Carbon cycling Carbon fixation Allochromatium vinosum superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium; 6.953572334 7.05215742 7.198119498 7.307108426 258529576 AceA Carbon cycling Carbon degradation others Dickeya dadantii Ech586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 8.078840174 7.719959882 7.894511085 115369560 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 7.440115836 7.480052249 7.443183167 7.109835765 27350496 xylanase Carbon cycling Carbon degradation Hemicellulose Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.125760698 7.30352268 7.149545197 7.128711068 7.213472226 7.600057943 116624491 exaA Organic Remediation Chlorinated solvents Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 7.208323878 7.083145516 6.662893993 7.294082141 3250924 tmoABE Organic Remediation Aromatics BTEX and related aromatics Xanthobacter autotrophicus Py2 7.307475054 7.383521008 7.055343312 7.074524127 7.629157748 7.27842678 6.965706974 160221157 amoA Nitrogen Nitrification superkingdom:Bacteria; 6.986029152 6.938545867 115433468 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.093546211 7.064550207 269976746 xylA Carbon cycling Carbon degradation Hemicellulose Mobiluncus mulieris 28-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus mulieris; 7.524583461 7.355626316 7.386757529 7.820164978 7.194780841 7.271973893 257804182 glnR Stress Nitrogen limitation Enterococcus gallinarum EG2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus gallinarum; 7.207160301 7.428079094 6.948825244 7.296083628 7.783100877 7.388923347 7.251516434 154503842 pulA Carbon cycling Carbon degradation Starch Ruminococcus gnavus ATCC 29149 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus gnavus; 7.329910493 7.391214369 99030337 nreB Metal Resistance Nickel Leptospirillum ferriphilum superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 7.544517402 7.25921449 7.256945391 7.407910995 7.610447662 241871106 cydB Stress Oxygen limitation Weissella paramesenteroides ATCC 33313 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Weissella;species:Weissella paramesenteroides; 7.030143112 7.08937629 116061980 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.926105173 7.727936164 8.080895258 7.650664077 7.736044763 8.114347221 7.945391716 120604578 pimF Organic Remediation Aromatics Aromatic carboxylic acid Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 7.508648259 7.508198961 7.377587027 7.675733135 7.980674908 7.724197845 7.951011836 7.847233068 153838076 pstB Stress Phosphate limitation Vibrio parahaemolyticus AQ3810 6.833666577 7.188119963 6.869371986 7.180495334 7.112097559 7.240757146 167353586 TerC Metal Resistance Tellurium Shewanella halifaxensis HAW-EB4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella halifaxensis; 6.856507464 7.065426797 110667894 CODH Carbon cycling Carbon fixation Haloquadratum walsbyi DSM 16790 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloquadratum;species:Haloquadratum walsbyi; 6.851865219 7.35392086 260554665 iro virulence Acinetobacter baumannii ATCC 19606 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 7.190323018 7.020640855 6.796877556 7.571389981 228741285 katE Stress Oxygen stress Bacillus cereus AH1273 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 7.40732706 7.38193441 7.074229782 6.751703107 7.463484185 7.096287685 7.218141068 7.059031453 92115785 grpE Stress Heat shock Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 7.841206975 8.563543378 8.489728276 8.421092072 8.2094278 8.804760985 8.526511667 8.372123131 212697545 ctsR Stress Protein stress Anaerococcus hydrogenalis DSM 7454 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Anaerococcus;species:Anaerococcus hydrogenalis; 7.009477273 7.021639202 87125358 endochitinase Carbon cycling Carbon degradation Chitin Synechococcus sp. RS9917 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.541096615 7.570625293 7.736309513 8.185429644 90204213 chnB Organic Remediation Other Hydrocarbons Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 7.284366594 7.64661811 7.604867289 7.691328585 7.649348722 747874 mnp Carbon cycling Carbon degradation Lignin Phanerochaete chrysosporium 8.042821037 8.044571799 7.426951551 7.9181925 7.259606674 7.687575927 7.310488107 253986175 sigma_24 Stress Sigma factors Methylovorus sp. SIP3-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylovorus; 7.42290945 7.225906326 6.946835705 7.671214944 75430127 xylA Carbon cycling Carbon degradation Hemicellulose Actinobacillus succinogenes 130Z superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus succinogenes; 7.054346654 7.359773007 147885998 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 7.652424168 7.07210966 7.282915521 7.562993004 7.312571421 8.003445576 50838765 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.594143556 7.447780861 7.545852693 7.741641243 7.423986431 7.303886629 227895350 fnr Stress Oxygen stress Lactobacillus plantarum subsp. plantarum ATCC 14917 6.957635669 7.152760876 7.376795492 7.097119218 7.173542792 68135565 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.393159132 7.684429597 7.700238773 8.142656069 7.686114706 7.922370331 7.977703609 83017293 gyrB other category gyrB Microbulbifer sp. MBIC08251 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Microbulbifer; 7.31077798 7.490757695 167594171 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 6.820006342 7.13002624 262308636 SMR_antibiotics Antibiotic resistance transporter Acinetobacter lwoffii SH145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter lwoffii; 7.517766067 7.455568843 6.883898214 7.562741582 7.858042987 7.059136897 7.333214055 7.205037361 133913568 catB Organic Remediation Aromatics BTEX and related aromatics Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 8.088925741 8.193343583 7.603933327 8.155078667 7.880105154 8.276136848 7.862396279 87199507 vanA Carbon cycling Carbon degradation Others Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 7.689921811 7.690919061 7.633897781 7.551615791 7.738674603 7.318691048 7.976472925 239826004 ahpF Stress Oxygen stress Geobacillus sp. WCH70 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.721280142 7.5744413 7.421359415 7.270759544 156857673 APS_AprA Sulphur adenylylsulfate reductase uncultured bacterium superkingdom:Bacteria; 7.406937686 6.955405745 6.958820554 7.015922209 12584338 norB Nitrogen Denitrification Achromobacter cycloclastes superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter; 7.449672073 7.125757761 7.249639 7.559866649 7.710233206 7.535991366 7.300391482 7.513679667 21685293 pectinase Carbon cycling Carbon degradation Pectin Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 7.375235376 7.088615122 52308356 gyrB other category gyrB Mannheimia succiniciproducens MBEL55E superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Basfia;species:Mannheimia succiniciproducens; 7.542315316 7.216467371 7.49144267 222151529 obgE Stress Radiation stress Macrococcus caseolyticus JCSC5402 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Macrococcus;species:Macrococcus caseolyticus; 6.928417187 7.248816208 34014589 exoglucanase Carbon cycling Carbon degradation Cellulose Athelia rolfsii superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Atheliales;family:Atheliaceae;genus:Athelia; 7.029018443 7.154266989 6.718725283 7.371033843 255278124 ahpC Stress Oxygen stress Geobacillus sp. Y4.1MC1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.110770892 7.166333404 6.694933504 7.237966153 222420736 Arylest Organic Remediation Aromatics Other aromatics Staphylococcus carnosus subsp. carnosus TM300 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus carnosus; 7.039526432 7.13065601 126627990 sigma_38 Stress Sigma factors Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 7.166691165 7.062772498 261884420 pstB Stress Phosphate limitation Campylobacter fetus subsp. venerealis str. Azul-94 7.22075388 7.10798502 116634747 narG Nitrogen Denitrification uncultured bacterium 7.219374062 7.533850426 6.971669413 7.498243553 7.600913615 7.577645426 7.559980122 171914250 TerD Metal Resistance Tellurium Verrucomicrobium spinosum DSM 4136 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Verrucomicrobium;species:Verrucomicrobium spinosum; 7.094961667 7.164481155 6.808910807 7.633557827 7.231553061 7.040438846 7.378528205 221565547 cytochrome Energy process Energy process Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 7.794151724 8.326881191 7.593571332 7.954012923 103486193 Arylest Organic Remediation Aromatics Other aromatics Sphingopyxis alaskensis RB2256 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 6.970236705 7.055482931 7.060508195 6.968695012 7.131937581 186660241 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 6.951086269 7.331272906 157912828 fnr Stress Oxygen stress Dinoroseobacter shibae DFL 12 7.528551654 7.809039709 7.706160828 7.694628784 8.029940786 8.079198417 7.957824924 7.866898115 10579801 mer Metal Resistance Mercury Halobacterium sp. NRC-1 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halobacterium;species:Halobacterium salinarum; 7.377010858 7.544338319 7.4059323 7.520540676 238871320 pstA Stress Phosphate limitation Edwardsiella ictaluri 93-146 7.192264567 7.123923845 13093494 SMR_antibiotics Antibiotic resistance transporter Mycobacterium leprae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.417604801 7.456898709 7.834455106 7.468033842 7.581976396 8.054747447 262197278 amyA Carbon cycling Carbon degradation Starch Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Haliangiaceae;genus:Haliangium;species:Haliangium ochraceum; 7.508815511 7.485398039 90326166 CopA Metal Resistance Copper Photobacterium profundum 3TCK 7.13492571 7.182137772 6.764955755 7.338976125 91795804 ppx Phosphorus Phosphorus utilization Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 7.355984552 7.671386208 7.479891801 7.225459211 8.112403798 7.314164259 7.131214137 149357236 pulA Carbon cycling Carbon degradation Starch Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 6.940211265 7.505668201 7.236943447 7.357010519 76588544 FTHFS Carbon cycling Acetogenesis Thermoanaerobacter ethanolicus ATCC 33223 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Thermoanaerobacter;species:Thermoanaerobacter pseudethanolicus; 7.350607319 7.490919152 7.351187518 7.124983691 7.46129163 255340619 GroES Stress Heat shock Flavobacteriaceae bacterium 3519-10 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae; 7.536734953 7.465621225 7.120902137 6.811818931 7.287163668 7.084481332 7.539307937 151857 ArsA Metal Resistance Arsenic 7.40586644 7.707341133 7.888277035 7.912951511 7.758536881 257447912 AceA Carbon cycling Carbon degradation others Enhydrobacter aerosaccus SK60 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Enhydrobacter;species:Enhydrobacter aerosaccus; 6.979184043 6.970565277 222526919 pcc Carbon cycling Carbon fixation Chloroflexus sp. Y-400-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus; 7.645722003 7.611438626 7.640841854 7.455110203 7.553864669 7.732041025 70984433 AceB Carbon cycling Carbon degradation others Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 7.240350387 7.546084977 6.804577947 7.40585881 7.357081219 7.583923406 7.309602394 83367667 ChrA Metal Resistance Chromium Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 7.294555411 7.649681724 7.929801107 7.822307897 8.081754062 8.243633655 7.762937259 114567147 pstB Stress Phosphate limitation Syntrophomonas wolfei subsp. wolfei str. Goettingen 7.373656957 7.375344825 7.204905075 7.630446293 159039160 pcc Carbon cycling Carbon fixation Salinispora arenicola CNS-205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 6.819327391 7.222587215 7.159600761 7.296423631 125995466 gyrB other category gyrB Shewanella baltica OS155 7.157094412 7.312703565 241460728 sigma_32 Stress Sigma factors Allochromatium vinosum DSM 180 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 7.432962239 7.439370505 7.055196781 7.039385946 7.30562596 83716122 iro virulence Burkholderia thailandensis E264 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 7.261040127 7.62113676 7.1503037 7.175733775 7.48697048 7.31429119 7.159343023 255275190 oxyR Stress Oxygen stress Hyphomicrobium denitrificans ATCC 51888 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 8.217346138 8.296058614 7.912450406 8.555098553 8.13488341 8.382646312 8.393124158 8.146401544 72118770 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.348438446 7.218874978 217986984 ara Carbon cycling Carbon degradation Hemicellulose Bacteroides eggerthii DSM 20697 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides eggerthii; 7.312796139 7.02123229 16754881 ara_fungi Carbon cycling Carbon degradation Hemicellulose Aspergillus oryzae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 7.605375613 7.524172676 7.693954879 7.35902073 118438387 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 7.440132271 7.55150319 226350027 bphF1 Organic Remediation Aromatics Polycyclic aromatics Rhodococcus opacus B4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 7.203924173 7.128918774 1001563 rubisco Carbon cycling Carbon fixation Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 7.355010412 7.941804699 7.676436521 7.762636288 7.926951834 7.486512775 148239979 mhpC Organic Remediation Aromatics Aromatic carboxylic acid Synechococcus sp. WH 7803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.010630273 7.18894724 268549433 amoA Nitrogen Nitrification superkingdom:Archaea; 7.088757444 6.873455433 110823059 pcc Carbon cycling Carbon fixation Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7.068594002 7.405729276 7.281070722 6.952830802 7.564074847 40253107 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.213835829 7.412829302 6.71317864 7.346493308 113909532 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Shewanella baltica OS195 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 7.122785009 7.569470918 6.940233784 7.378282671 67845246 pstS Stress Phosphate limitation Erwinia amylovora superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia; 6.789567457 7.612393217 7.198377858 7.312311601 7.389161424 32446117 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 7.162227542 7.015187933 125745191 mcrA Carbon cycling Methane Methane production uncultured archaeon superkingdom:Archaea; 7.378731536 7.324707459 153816315 cda Carbon cycling Carbon degradation Starch Ruminococcus torques ATCC 27756 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus torques; 7.165529057 7.195737596 7.060410535 6.916308886 7.656885514 7.251495076 6.966588587 186684798 phtA Organic Remediation Aromatics Aromatic carboxylic acid Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 6.729147489 6.888702195 4512364 alkH Organic Remediation Other Hydrocarbons Bacillus halodurans superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.090206274 7.045128036 6.80317659 7.34849035 37954354 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 6.585475573 7.309881432 6.790403885 7.331221169 28974756 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.115917077 7.622992612 13472474 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 7.24343144 7.637823683 7.231269979 7.52378786 7.413652015 7.279083363 7.50395854 46307920 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.226728462 7.002378119 126590269 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Bacillus sp. B14905 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.692917324 7.678037485 7.649874163 7.893557049 7.634618514 149232839 TerC Metal Resistance Tellurium Pedobacter sp. BAL39 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter; 7.131245406 7.477918713 7.136332682 7.169561818 7.882101831 7.586386384 7.568975622 7.404993284 187477884 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 7.360823228 7.249599891 37954429 nmoA Organic Remediation Aromatics Nitoaromatics Rhodococcus sp. DS7 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7.053839277 7.095350119 7.100876551 6.689599159 221532284 proV Stress Osmotic stress Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 7.918161961 7.624626891 7.469755232 7.910182899 7.640690129 7.933859086 7.689945254 7.850950746 189340754 SMR_antibiotics Antibiotic resistance transporter Chlorobium limicola DSM 245 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium limicola; 7.09562562 7.361530659 6.80339153 7.325485311 6.862993547 7.069989737 159889478 gyrB other category gyrB Prochlorococcus marinus str. MIT 9211 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 7.133424512 7.195588809 7.343946813 7.473757397 78221953 cytochrome Energy process Energy process Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 7.24729309 7.604646642 7.264081934 7.150617531 7.238210453 7.676351375 77459670 MFS_antibiotic Antibiotic resistance transporter Pseudomonas fluorescens Pf0-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.290882241 7.067651356 7.039740319 7.076918201 7.378902674 7.064364036 73748662 Ni_Fe_hydrogenase Energy process Energy process Dehalococcoides sp. CBDB1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.25151643 7.209911365 109699672 ahpC Stress Oxygen stress Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 7.452212332 7.271043139 157285700 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.315566747 7.142542959 149800 mcrA Carbon cycling Methane Methane production superkingdom:Archaea;phylum:Euryarchaeota;class:Methanobacteria;order:Methanobacteriales;family:Methanothermaceae;genus:Methanothermus; 6.920046885 7.299457142 89512732 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.124781069 7.437215242 7.381974948 7.464581629 7.640889903 7.693633968 7.481228189 7.710518316 111918775 amoA Nitrogen Nitrification superkingdom:Bacteria; 6.748247648 7.177519384 260778887 MFS_antibiotic Antibiotic resistance transporter Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 7.284608228 7.094709808 254480217 AceA Carbon cycling Carbon degradation others marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.365815515 7.680408275 7.71158807 7.662598502 7.31904849 7.527424117 7.387188831 115422027 pstC Stress Phosphate limitation Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 7.105503927 7.56036482 222880197 cydA Stress Oxygen limitation Campylobacter rectus RM3267 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter rectus; 7.001977511 7.100706056 7.003362326 7.656308664 85375830 MFS_antibiotic Antibiotic resistance transporter Erythrobacter litoralis HTCC2594 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 7.133275276 7.808592149 7.994759238 7.824503819 224537872 endochitinase Carbon cycling Carbon degradation Chitin Bacteroides cellulosilyticus DSM 14838 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 7.215704591 7.180039077 7.069261035 7.485090321 221723812 nhh Organic Remediation Aromatics Nitoaromatics Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.496263475 7.410521825 7.009639071 7.679484039 7.128588508 7.302354319 7.791904374 196113528 merB Metal Resistance Mercury Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 7.099877188 7.395742995 159903037 sigma_70 Stress Sigma factors Prochlorococcus marinus str. MIT 9211 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 7.098563347 7.065183457 219525894 dehH109 Organic Remediation Chlorinated solvents bacterium GD1 superkingdom:Bacteria; 7.519086581 7.442168709 163669940 amyA Carbon cycling Carbon degradation Starch Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 7.093232979 7.323402839 6.932052782 7.233669348 6.852447016 6.954874748 113867775 pcpE Organic Remediation Herbicides related compound Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 7.153487997 7.695794398 7.716869437 7.293206848 7.745479039 7.284126364 7.68476553 27468187 hrcA Stress Heat shock Staphylococcus epidermidis ATCC 12228 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus epidermidis; 7.18136444 6.942030997 189424612 hydrogenase Energy process Energy process Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 7.255576024 7.566228345 7.572021204 7.181910776 7.468023501 8.00696916 11641382 nagG Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas alcaligenes 6.899103293 7.136316293 126180075 glnA Stress Nitrogen limitation Methanoculleus marisnigri JR1 6.8403774 6.943900807 28901313 pstB Stress Phosphate limitation Vibrio parahaemolyticus RIMD 2210633 7.070682954 7.319206126 15899380 Quinol_oxidase_or_Sox Bioleaching Electron transport Sulfolobus solfataricus P2 7.149296052 7.13968613 189501491 ppx Phosphorus Phosphorus utilization Candidatus Amoebophilus asiaticus 5a2 superkingdom:Bacteria;phylum:Bacteroidetes;genus:Candidatus Amoebophilus;species:Candidatus Amoebophilus asiaticus; 7.235130138 6.818924102 6.625587595 7.622713393 7.027975364 6.931920508 7.414153103 68250346 pheA Organic Remediation Aromatics Other aromatics Pseudomonas sp. M1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.292418991 8.035547806 7.340373231 7.864688076 153008897 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 7.285680066 7.561556496 7.256996334 7.200487206 7.771059463 7.493357079 7.126343775 7.768043747 169828094 fnr Stress Oxygen stress Lysinibacillus sphaericus C3-41 7.123675625 7.114198495 148868857 merP Metal Resistance Mercury Vibrio harveyi HY01 7.177698633 7.108277192 90954653 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.875710153 7.588116843 7.433820998 7.541083503 7.851757697 209886855 mer Metal Resistance Mercury Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 7.237025609 7.041312883 7.204848628 7.632489461 62512290 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.259772249 7.407944886 6.977880755 7.611928108 7.481056015 7.221675191 7.460130733 14022990 ZntA Metal Resistance Zinc Mesorhizobium loti MAFF303099 7.666637759 7.519495619 7.366245267 7.338507724 7.590676761 171060987 cellobiase Carbon cycling Carbon degradation Cellulose Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 7.601609631 8.145995624 8.046456301 8.31337249 8.22614571 8.470371671 8.316220932 8.187075084 170176149 obgE Stress Radiation stress Thermotoga sp. RQ2 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga; 8.155331292 7.685781182 7.813188825 8.143813818 8.411172658 8.14611726 7.95445421 168261 glucoamylase Carbon cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;genus:Humicola; 7.70769897 7.682133854 7.166901642 6.871499231 7.691389837 78195305 sigma_32 Stress Sigma factors Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 7.690497991 7.066963472 7.487457158 7.331670938 106765626 amyA Carbon cycling Carbon degradation Starch Clostridium phytofermentans ISDg superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium phytofermentans; 7.267648249 7.048903317 46108938 cellobiase Carbon cycling Carbon degradation Cellulose Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 7.250217156 7.028946266 84667491 nosZ Nitrogen Denitrification Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.528896878 7.522958782 119451604 sigma_32 Stress Sigma factors marine gamma proteobacterium HTCC2143 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.349032305 6.941667593 7.348745092 7.067214046 7.173242742 114540777 trzN Organic Remediation Herbicides related compound Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.067317973 7.193622389 39997510 Arylest Organic Remediation Aromatics Other aromatics Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 7.065588531 7.251815839 121704258 ara_fungi Carbon cycling Carbon degradation Hemicellulose Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7.1327059 7.029976999 66046312 silC Metal Resistance Silver Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 7.864643174 8.17761738 7.690340244 7.939508514 8.06874216 7.631331703 7.7233621 76577426 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.276860003 7.247279278 7.111223046 6.920780629 227214986 glnA Stress Nitrogen limitation Rhodococcus sp. AN-22 7.379544115 7.52089319 219551061 tutFDG Organic Remediation Aromatics BTEX and related aromatics Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.065942236 7.266108833 7.241758396 7.34836721 7.406919688 7.513676871 7.290295221 7.370812969 260172242 ara Carbon cycling Carbon degradation Hemicellulose Bacteroides sp. D2 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 6.955805954 7.016822175 261878019 nrfA Nitrogen Dissimilatory N reduction Selenomonas noxia ATCC 43541 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas noxia; 7.234212757 7.340340921 7.225115052 7.240431967 154281865 cellobiase Carbon cycling Carbon degradation Cellulose Ajellomyces capsulatus NAm1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 7.081195027 6.976389015 6.969956723 6.823288664 7.751712711 84516855 phn Organic Remediation Herbicides related compound Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 7.294032821 7.384553249 7.009001265 7.195162902 7.739177275 7.376081458 7.425984057 228250891 pstA Stress Phosphate limitation Streptococcus salivarius SK126 6.629397757 7.133693025 111611144 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 7.272583442 7.485761475 7.348217164 7.595058244 7.855624546 7.560786081 7.72869847 153796262 pstS Stress Phosphate limitation Ruminococcus gnavus ATCC 29149 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus gnavus; 7.262600612 7.304641841 7.109386813 7.010731506 7.704426653 7.332142084 7.206101764 239624453 pstB Stress Phosphate limitation Clostridiales bacterium 1_7_47_FAA 6.950137541 7.633653448 7.070075536 7.341294607 157962247 cytochrome Energy process Energy process Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 7.244620743 7.407541874 50122087 ppx Phosphorus Phosphorus utilization Erwinia carotovora subsp. atroseptica SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 6.994651973 7.247764927 170730053 ahpF Stress Oxygen stress Xylella fastidiosa M12 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xylella;species:Xylella fastidiosa; 7.436906647 7.532666136 7.581222925 6.967058878 7.285605347 7.52248429 119899253 ChrA Metal Resistance Chromium Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 7.516407251 7.641380486 7.112175286 7.281735481 21217673 rubisco Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.551787767 7.371912669 7.227144672 7.400534904 85069162 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 6.867618067 7.245390656 6.889988678 6.752741683 262224437 pilin virulence pilin alpha proteobacterium HIMB114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales; 7.127218941 7.308998185 269830133 oxyR Stress Oxygen stress Vibrio alginolyticus 40B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 7.297530216 7.03202165 169830796 ChrA Metal Resistance Chromium Candidatus Desulforudis audaxviator MP104C superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Candidatus Desulforudis;species:Candidatus Desulforudis audaxviator; 7.401507063 7.297065566 126721740 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8.056441343 7.554172176 7.455439424 7.903402024 114193455 endoglucanase Carbon cycling Carbon degradation Cellulose Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.314156951 7.528292661 7.313327967 6.798723723 86604609 mnp Carbon cycling Carbon degradation Lignin Lentinula edodes 6.624605606 6.954274821 111073270 B_lactamase_C Antibiotic resistance Beta-lactamases Acinetobacter genomosp. 3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 7.202041431 7.183434946 72383136 nirA Nitrogen Assimilatory N reduction Prochlorococcus marinus str. NATL2A superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 7.083179641 7.357395648 85830689 CopA Metal Resistance Copper Leeuwenhoekiella blandensis MED217 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Leeuwenhoekiella;species:Leeuwenhoekiella blandensis; 7.675307991 7.60585505 35396188 bphA Organic Remediation Aromatics Polycyclic aromatics Delftia acidovorans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia; 6.68739209 6.938556946 110820479 alkK Organic Remediation Others Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7.227013041 7.065292952 6.81494883 7.465556348 6.934289731 7.227163312 118588674 trzN Organic Remediation Herbicides related compound Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 7.430545167 7.131843442 160901655 ChrA Metal Resistance Chromium Petrotoga mobilis SJ95 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Petrotoga;species:Petrotoga mobilis; 7.364027171 7.149839988 113529921 nmoA Organic Remediation Aromatics Nitoaromatics Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 6.942035572 7.547676568 7.79507761 7.020682616 7.894960827 7.374220648 7.437941171 8.004589392 28542651 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.383594613 7.193287781 58584752 dnaK Stress Heat shock Wolbachia endosymbiont strain TRS of Brugia malayi 6.954745165 7.032498342 209532858 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 7.609578135 7.824177416 7.822804904 8.310811122 8.118892096 7.941001366 8.100375875 212543035 BpH Organic Remediation Aromatics Aromatic carboxylic acid Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.35484767 7.268606329 6.985041009 6.917036567 7.450826316 7.455253672 495283 mnp Carbon cycling Carbon degradation Lignin Trametes versicolor 6.987842347 7.352874076 45124726 P450 Energy process Energy process Streptomyces peucetius ATCC 27952 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces peucetius; 7.582598926 8.420395491 8.152894075 8.142152199 8.329825327 84043043 pcaG Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 7.468004851 7.576284433 167462560 sigma_24 Stress Sigma factors Paenibacillus larvae subsp. larvae BRL-230010 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus larvae; 7.217076014 6.911488129 171185020 pstB Stress Phosphate limitation Thermoproteus neutrophilus V24Sta 7.704263086 7.475299565 7.610305388 8.187386509 8.015070143 7.998250209 8.40164705 66045842 silC Metal Resistance Silver Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 7.229869649 7.057630917 118591995 pimF Organic Remediation Aromatics Aromatic carboxylic acid Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 7.440329348 7.711156546 7.376977155 7.928798312 7.790825817 7.785995524 7.639313583 7.501622707 84668559 glnA Stress Nitrogen limitation Rhodobacterales bacterium HTCC2654 7.834610424 7.784915738 7.433960524 7.65163084 7.821344261 7.30178805 7.643629971 7.406077538 94549833 hly virulence hemolysin Candidatus Koribacter versatilis Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 6.792050637 7.40966847 1652609 todF Organic Remediation Others Synechocystis sp. PCC 6803 6.975048693 7.539142697 7.629743183 7.066942854 7.670754204 7.117799218 7.845890282 163812454 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 6.93121507 7.092176903 253569060 sigma_24 Stress Sigma factors Bacteroides sp. 1_1_6 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 7.422001695 7.363995401 7.656310097 7.523103503 77378649 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.252190484 7.506274425 7.192604992 7.513922051 7.245383096 2648434 catB Organic Remediation Aromatics BTEX and related aromatics Archaeoglobus fulgidus DSM 4304 superkingdom:Archaea;phylum:Euryarchaeota;class:Archaeoglobi;order:Archaeoglobales;family:Archaeoglobaceae;genus:Archaeoglobus;species:Archaeoglobus fulgidus; 6.830476976 7.010356578 7.020579678 7.320278826 71143450 endochitinase Carbon cycling Carbon degradation Chitin Trichoderma atroviride superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Trichoderma; 6.965977739 6.985052961 222151819 ppx Phosphorus Phosphorus utilization Macrococcus caseolyticus JCSC5402 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Macrococcus;species:Macrococcus caseolyticus; 6.959835072 6.965256993 206599920 integrase_tyrosine Bacteria phage REPLICATION Mycobacterium phage Fruitloop order:Caudovirales;family:Siphoviridae; 7.223796646 7.013185226 6.674034869 7.32854368 87135976 phoB Stress Phosphate limitation Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 7.271883805 7.403871804 7.279901188 7.058547589 7.52363259 7.498399158 7.225982277 7.631128313 256745659 fnr Stress Oxygen stress Clostridium papyrosolvens DSM 2782 6.948053587 7.324447658 7.620486547 7.186213907 227358250 ureC Nitrogen Ammonification Proteus mirabilis ATCC 29906 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 7.786184206 7.740253372 7.764579553 8.197251917 7.808601963 7.982107222 7.710481979 7.58116631 84666156 bclA Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.265879239 7.39576213 91774903 mauAB Organic Remediation Herbicides related compound Methylobacillus flagellatus KT superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 7.028742797 7.371778686 7.435431944 7.346044387 70606661 ZntA Metal Resistance Zinc Sulfolobus acidocaldarius DSM 639 7.034893353 7.381848958 6.987573175 6.946615339 7.255303106 219675213 mer Metal Resistance Mercury gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.108564254 7.067895507 255013174 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Bacteroides sp. 2_1_7 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 7.18277471 7.28471836 6.757176793 7.265747647 110612651 gyrB other category gyrB uncultured bacterium superkingdom:Bacteria; 7.138697624 7.08591424 158523592 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.060511279 7.212882488 256686240 glnA Stress Nitrogen limitation Jonesia denitrificans DSM 20603 7.339666277 7.135078065 7.277863734 7.110241915 7.624392857 7.756802796 7.436570138 152980456 silC Metal Resistance Silver Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 7.110893699 7.429898909 157405163 ChrA Metal Resistance Chromium Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 7.650998167 7.597371711 7.549703686 7.283280581 88702562 nosZ Nitrogen Denitrification uncultured soil bacterium superkingdom:Bacteria; 7.682873515 7.268108497 7.351652773 7.22322535 7.808228682 7.4447472 269832938 pstB Stress Phosphate limitation Vibrio harveyi 1DA3 7.853776878 7.769686362 8.21982214 8.038214177 7.999068602 8.369199613 8.136120422 15894542 obgE Stress Radiation stress Clostridium acetobutylicum ATCC 824 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium acetobutylicum; 6.748942487 7.357470768 167594225 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7.349010734 7.365661707 45185522 endochitinase Carbon cycling Carbon degradation Chitin Ashbya gossypii ATCC 10895 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Eremothecium;species:Eremothecium gossypii; 7.840472472 7.791844524 7.766096252 7.587377338 7.906825702 8.16279634 7.996476151 224821289 pstB Stress Phosphate limitation Natrialba magadii ATCC 43099 7.231565501 7.800445328 7.789719856 8.052394118 8.193093105 7.883278672 7.799751055 86280266 pstC Stress Phosphate limitation Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.606036696 7.942943357 7.554663606 7.374198939 7.931677804 161387592 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Phaeobacter gallaeciensis BS107 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 6.924560061 7.431769493 154150521 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Candidatus Methanoregula boonei 6A8 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;genus:Candidatus Methanoregula;species:Candidatus Methanoregula boonei; 7.256384758 7.31592103 116264561 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Polynucleobacter sp. QLW-P1DMWA-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 7.34899273 7.407880461 210628767 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Collinsella intestinalis DSM 13280 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella intestinalis; 7.224416949 7.103681294 7.318479703 7.002002837 7.393746636 6.941975735 7.318233557 7.480670331 113896093 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 6.695514715 6.925394722 20278807 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.069672496 7.301929713 85712119 sigma_38 Stress Sigma factors Idiomarina baltica OS145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina baltica; 6.988853772 7.257464976 112821111 rubisco Carbon cycling Carbon fixation Microcystis aeruginosa PCC 7806 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 7.183033037 7.146759974 7.104815943 7.141069323 7.221023116 146217177 chnB Organic Remediation Other Hydrocarbons Arthrobacter sp. L661 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.283130134 7.058542658 219869808 obgE Stress Radiation stress Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 7.590352982 8.010268131 2661684 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 7.086084579 7.138022134 7.014965579 7.367772145 7.467832867 7.220953726 254524628 narH Stress Oxygen limitation Stenotrophomonas sp. SKA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 7.575990495 7.770387129 7.468688996 7.201329722 7.688750381 7.205329856 7.456070648 163858043 pcpE Organic Remediation Herbicides related compound Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 7.292244601 7.346608023 7.559266005 7.255343461 7.714755408 6.787323899 7.140813768 7.659726082 190575106 ArsC Metal Resistance Arsenic Stenotrophomonas maltophilia K279a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 6.857178577 7.14976919 126716555 Arylest Organic Remediation Aromatics Other aromatics Roseobacter sp. CCS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.137876833 7.253290682 6.920904201 7.160697227 124265685 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 7.556196822 7.323724057 7.59775728 7.487298385 7.433217821 77378707 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.191787257 7.004105971 6.830462112 7.112749225 7.081226037 7.324186684 146279987 cytochrome Energy process Energy process Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 7.551205312 7.969956552 7.844082236 8.212191747 7.890522559 8.024735336 8.164907421 24213552 obgE Stress Radiation stress Leptospira interrogans serovar Lai str. 56601 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira interrogans; 7.017128051 7.08876091 119460377 pimF Organic Remediation Aromatics Aromatic carboxylic acid marine gamma proteobacterium HTCC2080 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.086017782 7.04812654 6.71760091 7.487284647 76588057 amyA Carbon cycling Carbon degradation Starch Thermoanaerobacter ethanolicus ATCC 33223 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Thermoanaerobacter;species:Thermoanaerobacter pseudethanolicus; 6.956342161 7.061084444 6.923628447 7.233778764 91716579 pimF Organic Remediation Aromatics Aromatic carboxylic acid Shewanella denitrificans OS217 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella denitrificans; 7.225318549 7.50562064 7.067378678 7.372919442 8.025769092 7.207916514 7.793525557 153007386 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 7.350691414 7.525147563 8.059865597 7.845646131 7.671787186 7.749272499 8.273125509 163751012 pilin virulence pilin Shewanella benthica KT99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella benthica; 7.021698381 7.516725108 6.823648484 7.476742433 211997243 helicase_family_4 Bacteria phage REPLICATION Kluyvera phage Kvp1 7.249450115 7.115193096 221724111 proV Stress Osmotic stress Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 6.931406718 7.196806507 6.909915724 7.124744457 7.367314286 7.098940547 7.614959017 237757814 grpE Stress Heat shock Corynebacterium kroppenstedtii DSM 44385 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium kroppenstedtii; 7.062148301 7.205070522 158440354 pstB Stress Phosphate limitation Clostridium bolteae ATCC BAA-613 7.946132561 7.516041593 7.899693186 7.486762242 229362633 pstB Stress Phosphate limitation Pseudomonas fluorescens SBW25 7.658766403 7.854370264 7.514037823 7.482090436 7.377533116 8.055185526 7.5308971 227486932 sigma_24 Stress Sigma factors Corynebacterium glucuronolyticum ATCC 51867 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glucuronolyticum; 7.707281917 8.023922761 7.649889276 8.087653319 7.911550052 46389813 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7.087297818 7.235054653 7.476883694 40313278 amyA Carbon cycling Carbon degradation Starch Aspergillus awamori superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 7.290968051 6.964587619 146282440 SilA Metal Resistance Silver Pseudomonas stutzeri A1501 7.978966678 7.505303781 26988675 mdlD Organic Remediation Aromatics Other aromatics Pseudomonas putida KT2440 6.818556419 7.244385711 258515183 fnr Stress Oxygen stress Desulfotomaculum acetoxidans DSM 771 7.278472391 7.463300069 116743213 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.144561997 7.019452917 46108462 exochitinase Carbon cycling Carbon degradation Chitin Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 6.900291847 6.947501061 120600694 sigma_32 Stress Sigma factors Shewanella sp. W3-18-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 7.747539074 7.809992664 7.460523351 8.069973371 7.69455939 7.687982112 7.849327922 7.602641514 222094667 TerD Metal Resistance Tellurium Bacillus cereus Q1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 7.080504948 7.174190838 903303 pstS Stress Phosphate limitation Bacillus subtilis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.371126219 7.448534763 198265794 pimF Organic Remediation Aromatics Aromatic carboxylic acid Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 7.03322932 7.004345589 28412562 gyrB other category gyrB synthetic construct 7.239859104 7.022538694 2633243 srt virulence surface protein Bacillus subtilis subsp. subtilis str. 168 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 7.07171118 7.677918557 7.062983615 6.921289647 578092 phenol_oxidase Carbon cycling Carbon degradation Lignin Phlebia radiata superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phlebia; 7.666571082 7.756990422 8.278332466 7.228291412 8.235186636 7.693758877 7.508883903 8.035157449 224027844 APS_AprA Sulphur adenylylsulfate reductase uncultured alpha proteobacterium 6.897718154 7.167462954 7.082977448 6.835514821 227333370 narI Stress Oxygen limitation Citrobacter youngae ATCC 29220 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter youngae; 7.190306597 7.276440071 7.892385397 7.50286412 7.77575319 7.479883301 260861960 fnr Stress Oxygen stress Selenomonas sputigena ATCC 35185 7.40256498 7.543113812 7.362881007 7.343925172 7.904681544 7.522191505 7.176413133 7.364633545 158442999 CopA Metal Resistance Copper Faecalibacterium prausnitzii M21/2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Faecalibacterium;species:Faecalibacterium prausnitzii; 7.883383142 7.613169126 7.250100798 7.774053095 7.420153916 7.352997311 7.808959099 118475621 CorC Metal Resistance Cobalt Campylobacter fetus subsp. fetus 82-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter fetus; 6.889907931 6.940808165 217037340 pcc Carbon cycling Carbon fixation Thermosipho africanus TCF52B superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermosipho;species:Thermosipho africanus; 7.361560765 6.85950877 6.832595232 7.318639294 110624481 gyrB other category gyrB Shewanella sp. W01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 7.722686352 7.495943082 7.442799475 7.634860186 7.758266404 24378013 TehB Metal Resistance Tellurium Streptococcus mutans UA159 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus mutans; 7.571204845 7.162392265 163868808 MFS_antibiotic Antibiotic resistance transporter Bartonella tribocorum CIP 105476 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella tribocorum; 7.170853358 7.412560489 7.107465738 7.133248214 7.462220295 7.652036815 7.247394301 7.913970543 254520986 sigma_24 Stress Sigma factors Stenotrophomonas sp. SKA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 7.23053222 7.621811836 7.449079193 7.186500372 7.247304242 7.186752783 7.281158878 146304742 nagI Organic Remediation Aromatics Aromatic carboxylic acid Metallosphaera sedula DSM 5348 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Metallosphaera;species:Metallosphaera sedula; 7.275663332 7.320262615 7.17926474 7.927699942 268316046 ara Carbon cycling Carbon degradation Hemicellulose Rhodothermus marinus DSM 4252 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 7.53269996 7.22535763 7.514712318 7.762900496 7.527116226 7.674399908 157804721 AprA Sulphur adenylylsulfate reductase Chlorobium limicola 7.424281912 7.564809074 27352201 pcc Carbon cycling Carbon fixation Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.093328269 7.686912438 269125125 sigma_24 Stress Sigma factors Thermomonospora curvata DSM 43183 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora;species:Thermomonospora curvata; 7.257444311 7.609136083 7.661159808 7.900138114 7.137352942 7.401179961 166364579 pstS Stress Phosphate limitation Microcystis aeruginosa NIES-843 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 7.462166518 7.148969013 219540567 hrcA Stress Heat shock Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 6.957664763 6.988949508 21109137 silC Metal Resistance Silver Xanthomonas axonopodis pv. citri str. 306 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas axonopodis; 7.453503763 7.339897261 7.210050169 7.417592518 7.293583618 7.165243261 7.036054063 108771787 chnB Organic Remediation Other Hydrocarbons Mycobacterium sp. MCS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.483559749 7.149652199 7.399143346 7.393525996 7.3516386 7.620976329 161611282 obgE Stress Radiation stress Streptococcus thermophilus LMG 18311 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus thermophilus; 7.187789696 6.767148874 6.448258126 7.346828826 72161391 SMR_antibiotics Antibiotic resistance transporter Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 7.417308038 7.94506342 7.444269186 7.959506292 8.322300369 8.128997797 7.75222836 196193679 pnbA Organic Remediation Aromatics Nitoaromatics Alcanivorax sp. DG881 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 7.638538453 7.519298155 7.519636005 7.231817062 8.033300032 260570580 glnA Stress Nitrogen limitation Ferroglobus placidus DSM 10642 7.451416944 7.754787278 7.631388209 7.677011779 110799044 hly virulence hemolysin Clostridium perfringens ATCC 13124 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium perfringens; 7.172593208 7.038630673 254505642 iuc virulence aerobactin Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.738306007 7.529510851 8.182998833 7.808692626 7.585055759 7.901735654 8.173754044 153809400 pcc Carbon cycling Carbon fixation Bacteroides caccae ATCC 43185 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides caccae; 7.198733158 6.830374612 6.990953149 7.239911403 269786074 SMR_antibiotics Antibiotic resistance transporter Sphaerobacter thermophilus DSM 20745 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 7.69030946 7.280974851 7.227348061 7.44509575 7.775550913 7.308027251 7.104567504 121606982 ChrA Metal Resistance Chromium Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 6.679270212 7.375909577 237687065 phoB Stress Phosphate limitation Teredinibacter turnerae T7901 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 7.305060656 7.516136202 7.404444116 7.737329669 7.89687861 7.76268587 7.458735649 7.673037996 14971019 AceA Carbon cycling Carbon degradation others Colwellia maris superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Colwelliaceae;genus:Colwellia; 7.025317759 7.44629932 7.122768441 7.48613231 7.641189544 7.539342049 7.589081959 223982603 gdh Nitrogen Ammonification Holdemania filiformis DSM 12042 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichi;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Holdemania;species:Holdemania filiformis; 6.948651474 6.877280093 240268036 sigma_70 Stress Sigma factors Bartonella grahamii as4aup superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella grahamii; 7.278662211 7.267101279 87118280 amyA Carbon cycling Carbon degradation Starch Marinomonas sp. MED121 6.723763783 6.667459661 226092723 clpC Stress Protein stress Brevibacillus brevis NBRC 100599 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus brevis; 7.067580162 7.338286511 7.180688345 7.129575491 7.541929787 224027977 AprA Sulphur adenylylsulfate reductase uncultured gamma proteobacterium 7.064156462 7.125553644 6.93017363 7.607751505 6.963435415 7.234396737 7.56861474 217986748 katA Stress Oxygen stress Bacteroides eggerthii DSM 20697 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides eggerthii; 6.881490648 7.590708623 15612794 fnr Stress Oxygen stress Bacillus halodurans C-125 6.977571277 7.168421883 223042474 NirB Nitrogen Assimilatory N reduction Staphylococcus capitis SK14 7.398920686 7.244388327 7.504814995 7.20528312 7.877382159 7.129438399 7.56794984 7.616432519 71280081 CopA Metal Resistance Copper Colwellia psychrerythraea 34H superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Colwelliaceae;genus:Colwellia;species:Colwellia psychrerythraea; 7.181321916 6.958388635 126105555 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 6.492072785 7.367552024 146323165 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 7.875115033 7.678316907 7.358790148 7.632307646 93357152 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 7.337375594 7.268520902 7.082248593 7.177682045 7.516837061 218989136 phenol_oxidase Carbon cycling Carbon degradation Lignin Lactarius lignyotus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Russulales;family:Russulaceae;genus:Lactarius; 7.181980051 7.602113966 7.395170346 7.305517513 7.302074275 78061126 TerD Metal Resistance Tellurium Burkholderia sp. 383 7.311019736 7.077953168 23867895 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 7.042216534 7.232961709 115932344 mdlB Organic Remediation Aromatics Aromatic carboxylic acid Strongylocentrotus purpuratus superkingdom:Eukaryota;kingdom:Metazoa;phylum:Echinodermata;class:Echinoidea;order:Echinoida;family:Strongylocentrotidae;genus:Strongylocentrotus; 6.81633775 7.430955193 7.125344646 7.40102791 171697253 pstB Stress Phosphate limitation Cyanothece sp. ATCC 51142 7.104962832 7.566129826 197294635 obgE Stress Radiation stress Candidatus Phytoplasma australiense superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Acholeplasmatales;family:Acholeplasmataceae;genus:Candidatus Phytoplasma; 6.95330927 7.056953835 6.543926532 7.43465213 72117569 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.263953072 7.220439329 121606440 hly virulence hemolysin Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 7.649392908 7.410984984 7.641033851 7.614672945 7.500265291 7.722096104 121605697 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 7.560970484 7.414329357 7.297161166 7.035447346 7.455610319 125717247 atzA Organic Remediation Herbicides related compound Streptococcus sanguinis SK36 6.996381959 7.165089164 76558075 ZntA Metal Resistance Zinc Natronomonas pharaonis DSM 2160 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natronomonas;species:Natronomonas pharaonis; 7.723997854 7.570339634 7.68679125 7.201359798 7.563498361 7.891123408 20094168 aclB Carbon cycling Carbon fixation Methanopyrus kandleri AV19 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanopyri;order:Methanopyrales;family:Methanopyraceae;genus:Methanopyrus;species:Methanopyrus kandleri; 7.56723537 7.783562831 7.080043314 7.418669551 7.805109272 148513744 linB Organic Remediation Pesticides related compound Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.162541926 7.426778109 7.300563063 6.888142102 7.664758452 7.108214789 6.895342816 7.588768796 237667639 ppk Phosphorus Phosphorus utilization Clostridium butyricum E4 str. BoNT E BL5262 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium butyricum; 7.345631842 6.83820906 86605327 nirA Nitrogen Assimilatory N reduction Synechococcus sp. JA-3-3Ab 7.569460184 7.482825302 7.536052592 7.825996404 7.279388542 7.14919532 77387838 mmoX Carbon cycling Methane Methane oxidation Rhodobacter sphaeroides 2.4.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 7.221533865 7.409696031 7.098257097 7.427251354 148474816 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 6.91512646 7.148668443 6.984697969 6.891233756 68555061 CODH Carbon cycling Carbon fixation Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 7.563094094 7.660491863 7.260619881 7.3086278 7.538833925 7.509955086 7.463616941 7.370638108 159460232 exochitinase Carbon cycling Carbon degradation Chitin Pochonia chlamydosporia superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Clavicipitaceae;genus:Pochonia; 7.228375105 7.390669857 7.021963594 7.45241632 152971348 ArsC Metal Resistance Arsenic Klebsiella pneumoniae subsp. pneumoniae MGH 78578 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 7.66286597 7.67254634 7.739258862 7.238724007 8.175433376 7.483845835 7.366823064 7.574820256 193201431 DNA_polymerase_type_I Bacteria phage REPLICATION Enterobacteria phage 13a order:Caudovirales;family:Podoviridae;genus:T7-like viruses; 6.589779072 6.836951861 7.318745779 6.938261416 7.175445921 145618783 nrfA Nitrogen Dissimilatory N reduction Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 7.569971641 7.604849868 7.415445949 7.712358768 7.659289686 8.103730802 8.085472859 7.822944469 158138793 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.610139462 7.740344114 7.548789294 7.02827821 7.863617881 7.488949341 7.423132034 8.056164985 119865308 exaA Organic Remediation Chlorinated solvents Psychromonas ingrahamii 37 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas;species:Psychromonas ingrahamii; 7.252648425 7.446991038 7.313604852 6.767784452 7.495149624 7.100963645 7.349773428 226904009 phoA Stress Phosphate limitation Acidaminococcus sp. D21 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Acidaminococcus; 7.180225647 7.218275759 7.07801215 7.723212379 86148129 obgE Stress Radiation stress Vibrio sp. MED222 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.154128132 6.884917485 259168647 hly virulence hemolysin Lactobacillus antri DSM 16041 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus antri; 7.421871679 7.318095633 7.534849999 7.528487169 71899315 TerC Metal Resistance Tellurium Xylella fastidiosa Ann-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xylella;species:Xylella fastidiosa; 6.899435 7.326426835 4586279 nagI Organic Remediation Aromatics Aromatic carboxylic acid Alcaligenes faecalis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes; 7.397224626 7.527573791 7.634668451 192290628 iro virulence Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.166459596 7.542700333 7.225989144 6.869388782 58801243 ureC Nitrogen Ammonification Campylobacter lari superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter; 7.661192653 7.533893507 8.339991795 33620646 T4_recomb_endonuclease Bacteria phage REPLICATION Enterobacteria phage RB49 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.166036818 7.121777481 37359391 phenol_oxidase Carbon cycling Carbon degradation Lignin Rigidoporus microporus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Rigidoporus; 7.085184939 7.063517721 71383880 nasA Nitrogen Assimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.308222894 7.544943715 7.230511673 7.914731824 7.360897777 7.422121395 197629236 CopA Metal Resistance Copper Thermococcus barophilus MP superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus barophilus; 6.521124615 7.298179085 77378669 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 6.885194321 7.208947573 6.854769918 7.35414953 115378591 pcc Carbon cycling Carbon fixation Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 7.242871836 7.40323638 262350649 hly virulence hemolysin Vibrio sp. RC586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.046326052 6.973769899 7.065134478 157285395 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.135419795 7.559523146 7.34948947 7.014364156 7.631614074 7.145262995 7.267216365 7.154496071 159042066 mer Metal Resistance Mercury Caldivirga maquilingensis IC-167 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Caldivirga;species:Caldivirga maquilingensis; 7.164581611 7.361515977 7.177211393 7.579664096 94555038 pstC Stress Phosphate limitation Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 7.402709774 7.174194458 7.304925224 7.303388917 7.471304864 7.27757934 7.354870325 187606084 pulA Carbon cycling Carbon degradation Starch Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 7.445537374 7.395439263 7.470933456 7.288459915 74318690 pimF Organic Remediation Aromatics Aromatic carboxylic acid Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 7.243798022 7.052855544 7.017803055 7.383281399 169793462 narG Nitrogen Denitrification uncultured bacterium 6.805918716 7.045543452 7.577812916 29835106 sigma_70 Stress Sigma factors Chlamydophila caviae GPIC superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Chlamydiaceae;genus:Chlamydophila;species:Chlamydophila caviae; 7.024249601 6.846765476 198252185 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 7.031019567 7.064996479 8.111383089 7.760518332 44712 glnA Stress Nitrogen limitation Methanococcus voltae 7.291720801 6.958111829 242350354 iuc virulence aerobactin Staphylococcus epidermidis M23864:W1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus epidermidis; 6.991132067 7.072976952 261500170 amoA Nitrogen Nitrification superkingdom:Bacteria; 6.936792285 6.873691175 10639297 antioxidant Bioleaching Metal Resistance Thermoplasma acidophilum superkingdom:Archaea;phylum:Euryarchaeota;class:Thermoplasmata;order:Thermoplasmatales;family:Thermoplasmataceae;genus:Thermoplasma; 7.606266964 7.313356269 226343639 AceB Carbon cycling Carbon degradation others Legionella drancourtii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella; 6.999355622 6.935525247 225678030 iro virulence Paracoccidioides brasiliensis Pb03 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides;species:Paracoccidioides brasiliensis; 7.240779144 7.275886522 6.741878517 7.126256446 7.626585167 7.368231908 7.277344339 85836532 ppx Phosphorus Phosphorus utilization Vibrio sp. MED222 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.391194896 7.139729911 94470995 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.338171973 7.288792964 7.129199804 7.056733647 73749208 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. CBDB1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.803034006 7.626414917 7.59280649 7.597340107 8.00617696 7.53816296 7.498965952 7.23958356 219543742 pcc Carbon cycling Carbon fixation Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 6.911005474 7.505423636 162568565 aoxB Metal Resistance Arsenic uncultured bacterium superkingdom:Bacteria; 7.445642288 7.327911307 7.35370737 7.837359338 7.702569091 7.486731062 7.767986836 145297806 cydA Stress Oxygen limitation Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 7.530632645 7.316190519 7.166002244 7.234461579 7.606192908 119869608 nmoA Organic Remediation Aromatics Nitoaromatics Mycobacterium sp. KMS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.518135781 7.539954783 7.161045002 209401708 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.425190885 7.260376293 7.254562355 7.463535292 119899403 nosZ Nitrogen Denitrification Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 7.44942566 7.922862389 7.839461669 7.712387654 47231509 phoB Stress Phosphate limitation Alcaligenes faecalis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes; 8.399235034 8.278335121 8.054690385 8.81608588 8.138498154 8.510176728 8.40046344 8.174757622 152980942 atzA Organic Remediation Herbicides related compound Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 7.598880876 7.605195969 7.273785867 7.45566546 117576546 ZntA Metal Resistance Zinc Gramella forsetii KT0803 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Gramella;species:Gramella forsetii; 7.719350329 7.346099786 7.367259659 7.63648547 7.360097477 7.502528964 7.375077889 7.764246609 224603038 iro virulence Lutiella nitroferrum 2002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Lutiella;species:Lutiella nitroferrum; 7.213878862 7.993605889 126637440 sigma_38 Stress Sigma factors Shewanella loihica PV-4 7.194075641 7.220900179 58269680 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Cryptococcus neoformans var. neoformans JEC21 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Tremellomycetes;order:Tremellales;family:Tremellaceae;genus:Filobasidiella;species:Filobasidiella neoformans; 7.278749076 7.283864367 7.267835745 7.18301679 7.533733086 3157728 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 7.189956993 7.464762576 7.529510417 7.074046004 7.362290293 7.457657661 7.938816492 110169427 TerZ Metal Resistance Tellurium Trichodesmium erythraeum IMS101 7.166483948 7.154049759 6.892126993 7.042511711 242391100 pstA Stress Phosphate limitation Streptococcus dysgalactiae subsp. equisimilis GGS_124 7.168469414 7.141128584 7.537720778 7.853944356 7.277883825 7.508597187 7.485724515 212526228 nagG Organic Remediation Aromatics Aromatic carboxylic acid Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.105084546 7.218695937 6.65064727 7.332950631 223894568 gyrB other category gyrB bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 7.058155898 7.14586648 145256354 pectinase Carbon cycling Carbon degradation Pectin Aspergillus niger CBS 513.88 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.198438931 7.123081155 255345400 phoB Stress Phosphate limitation Pedobacter heparinus DSM 2366 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter;species:Pedobacter heparinus; 7.922649384 7.430506502 7.254445597 7.421978601 7.874526129 7.407284789 7.629059891 7.524384388 19909609 gyrB other category gyrB Marinomonas communis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 7.818152075 7.638141166 7.681927135 8.024036271 7.04341744 7.402932836 7.795767045 237685225 AceA Carbon cycling Carbon degradation others Teredinibacter turnerae T7901 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 7.30651817 7.34767243 7.484575582 7.211404769 117982559 CopA Metal Resistance Copper Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.042158914 7.213448222 150835911 ureC Nitrogen Ammonification Marinomonas sp. MWYL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 6.999499153 7.189186742 110634625 fnr Stress Oxygen stress Mesorhizobium sp. BNC1 7.136332682 7.239743354 7.249456875 7.220902659 195941246 narI Stress Oxygen limitation Escherichia coli O157:H7 str. EC4024 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 7.166954491 7.041879865 6.916499244 7.503541065 3676527 Host_recognition_T4_type Bacteria phage HOST RECOGNITION/STRUCTURAL Enterobacteria phage Ac3 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.14867484 7.235589521 6.615968479 7.001727462 111920732 pheA Organic Remediation Aromatics Other aromatics Corynebacterium glutamicum superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium; 7.014064759 7.202731977 39943108 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 7.709174597 7.637104552 7.207209818 8.216447011 7.684152499 7.796467044 7.978395384 3282063 aa3_type_cytochrome_oxidase Bioleaching Electron transport Acidithiobacillus ferrooxidans 7.656480747 7.542600623 7.204011799 7.740288746 7.909395888 7.96242426 7.617037195 7.545240299 284006896 type_III_secretion virulence secretion Arsenophonus nasoniae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Arsenophonus; 7.02234176 7.011918331 255925104 pstA Stress Phosphate limitation Actinosynnema mirum DSM 43827 7.121233896 7.817801304 150670 gdh Nitrogen Ammonification superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Peptoniphilus; 7.451659878 7.691050339 113526716 benD Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 7.462532126 7.38684746 7.704112357 7.87500629 17548892 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia solanacearum GMI1000 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 7.504897893 8.06498006 8.349624438 7.351366847 8.43301521 7.659744578 7.647874728 7.873202773 56677639 sox Sulphur Sulphur oxidation Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 7.432904565 7.22486704 6.972372329 6.811170486 7.504829389 121704365 BpH Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7.18503807 7.496014596 156867361 tutFDG Organic Remediation Aromatics BTEX and related aromatics Clostridium leptum DSM 753 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 7.21541427 7.278452827 6.866574111 6.992775041 10176492 glnA Stress Nitrogen limitation Bacillus halodurans C-125 7.682822008 7.216194574 73749315 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. CBDB1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.49896275 7.264215977 7.079856521 7.050605934 7.53391738 7.521907833 7.332486707 220935966 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 7.341616484 7.933998072 7.767978004 7.481336021 7.414280443 7.76755982 49526426 phoA Stress Phosphate limitation Candida glabrata superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Nakaseomyces; 6.897571733 7.196946915 189467191 ara Carbon cycling Carbon degradation Hemicellulose Bacteroides intestinalis DSM 17393 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides intestinalis; 7.335191024 6.971148885 6.897347513 7.08303067 7.337267371 7.051514607 7.359323588 110346045 phn Organic Remediation Herbicides related compound Escherichia coli 536 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 6.964706576 7.321021595 31747156 ara_fungi Carbon cycling Carbon degradation Hemicellulose Hypocrea jecorina superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 7.135634965 7.11472971 218777994 sigma_32 Stress Sigma factors Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 7.680962771 7.568969878 254418356 ahpF Stress Oxygen stress Brevundimonas sp. BAL3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas; 7.377449799 7.284213612 7.001635817 7.167092288 119369964 gyrB other category gyrB uncultured bacterium superkingdom:Bacteria; 6.935066842 7.038380758 7.189794318 15891456 pimF Organic Remediation Aromatics Aromatic carboxylic acid Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.090381046 7.315888165 21280333 ara_fungi Carbon cycling Carbon degradation Hemicellulose Aspergillus kawachii superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 6.555721335 7.082055059 14495300 nicdehydr Organic Remediation Aromatics Heterocyclic aromatics Arthrobacter nicotinovorans superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.236132964 7.493597212 7.777124432 7.305009082 7.417535286 190686372 pilin virulence pilin Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 7.422719227 6.811312669 7.289663407 7.16842046 7.476169541 220719011 ppx Phosphorus Phosphorus utilization Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 7.359497824 7.646673064 7.435298887 6.900245805 78189386 grpE Stress Heat shock Chlorobium chlorochromatii CaD3 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium chlorochromatii; 6.939900044 7.071797695 6.519954106 6.548290521 7.488434774 167774888 gyrB other category gyrB Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira biflexa; 7.258266381 7.205740144 87120210 aoxB Metal Resistance Arsenic Marinomonas sp. MED121 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 7.89920553 8.47038447 8.496237982 8.305225898 8.382594643 8.027613342 8.274700044 8.203434297 212684898 cydA Stress Oxygen limitation Providencia alcalifaciens DSM 30120 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 6.726278673 7.410564679 7.157208355 7.448258571 110550266 bco Organic Remediation Aromatics Aromatic carboxylic acid Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 7.197455554 6.893960462 227215224 ahpC Stress Oxygen stress Sphingobium sp. SYK-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 7.64991438 7.583016988 8.00594005 7.175048505 7.305260827 7.161089116 84391857 ArsC Metal Resistance Arsenic Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 6.865113455 7.221330667 6.76671667 7.422095812 211585573 amyA Carbon cycling Carbon degradation Starch Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 6.971940857 7.032057544 6.300664396 7.484880985 6.840239809 7.383399899 47117695 amyA Carbon cycling Carbon degradation Starch Thermococcus sp. OGL-20P superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus; 7.917726786 7.924808646 7.868422813 7.118960803 8.294105443 7.580390616 7.466631038 7.706092214 189501224 obgE Stress Radiation stress Chlorobium phaeobacteroides BS1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 7.771417682 7.591701792 7.03422485 7.231302462 7.390181744 7.239200786 7.221109826 217329964 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.202729842 7.937673731 8.151549057 8.722128264 8.273309941 7.982056797 8.510742092 187425852 pstB Stress Phosphate limitation Akkermansia muciniphila ATCC BAA-835 7.040931606 7.646455329 6.947689159 6.900879692 87300826 amyA Carbon cycling Carbon degradation Starch Synechococcus sp. WH 5701 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.585303887 7.672110618 7.483234422 7.432008762 7.796143814 7.639185078 7.421895191 8.155714698 86359238 xylA Carbon cycling Carbon degradation Hemicellulose Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.280224386 8.059231278 7.594384799 7.517124967 8.061755178 7.906374015 90434006 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 7.028309675 7.189487618 116253999 CadA Metal Resistance Cadmium Rhizobium leguminosarum bv. viciae 3841 7.328389685 7.4976919 7.490993194 7.462712118 7.599393645 7.67844662 7.57438877 7.58531584 55978089 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.725184536 7.955630342 8.059751471 7.851292934 7.921197439 7.357491698 7.899938626 72121946 proO Organic Remediation Aromatics Other aromatics Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.470724398 7.448056988 7.058338531 7.066103037 7.735556911 123443845 gyrB other category gyrB Yersinia enterocolitica subsp. enterocolitica 8081 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 7.086050119 6.92296119 133737342 ChrA Metal Resistance Chromium Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 7.539033024 6.859980156 7.227389613 7.502865559 17385486 narG Nitrogen Denitrification Paenibacillus sp. Lgg20.6 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.182480701 7.113407214 157404154 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 6.948286052 7.364721502 7.613890848 7.129053873 7.947129588 7.339093535 7.302043074 7.856411937 167596188 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.000765184 7.928556703 7.468735384 7.56399387 7.383348128 7.930061413 261187401 iro virulence Ajellomyces dermatitidis SLH14081 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 7.237606793 7.238844059 7.342608948 7.272673829 219564327 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.320831485 7.503552437 7.857436428 7.798646979 7.412149619 116228378 fnr Stress Oxygen stress Solibacter usitatus Ellin6076 6.91781159 7.430246411 94426146 pilin virulence pilin Oceanobacter sp. RED65 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Bermanella; 7.21655242 7.096502592 7.016602954 6.803642222 7.814650542 6.966271231 7.231820275 280957620 cytochrome Energy process Energy process Desulfovibrio aespoeensis Aspo-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio aespoeensis; 7.234422489 7.5946537 60100865 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.081100345 7.163237681 256819198 sigma_70 Stress Sigma factors Capnocytophaga ochracea DSM 7271 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga ochracea; 6.850610642 7.350803233 240139327 SMR_antibiotics Antibiotic resistance transporter Methylobacterium extorquens AM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 7.474295829 7.244657536 7.725421633 83815612 pcc Carbon cycling Carbon fixation Salinibacter ruber DSM 13855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 7.346669247 7.504405639 33151868 sigma_70 Stress Sigma factors Haemophilus ducreyi 35000HP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus ducreyi; 7.239635836 7.179375216 6.776575812 6.889687701 7.440416955 118578771 silC Metal Resistance Silver Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 7.883304092 7.790026097 7.422271241 7.808849932 156034753 tftH Organic Remediation Aromatics Chlorinated aromatics Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 7.350879974 7.471553916 7.318365919 7.146406895 7.896659049 124363478 pstA Stress Phosphate limitation Methanocorpusculum labreanum Z 7.318923723 7.036005315 133778468 gyrB other category gyrB Leptospira kirschneri serovar Ratnapura superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira kirschneri; 7.237144126 7.495815056 7.423935827 7.515475226 126035171 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.487308896 7.696114766 75676505 SMR_antibiotics Antibiotic resistance transporter Nitrobacter winogradskyi Nb-255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 7.427222643 6.86828031 6.953270345 6.650981118 7.415679905 83648177 vanA Carbon cycling Carbon degradation Others Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 7.177047214 7.179019979 125714903 endoglucanase Carbon cycling Carbon degradation Cellulose Clostridium thermocellum ATCC 27405 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 7.417845574 7.332287845 6.992818004 7.139504945 7.326788862 7.781467907 7.576582076 147885976 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 7.103165859 6.991321055 6.871277572 7.310975869 127513452 cytochrome Energy process Energy process Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 7.812766295 7.95919862 7.767756384 7.51142379 7.394438278 7.479295007 7.919488662 157850429 cumA Organic Remediation Aromatics Other aromatics uncultured bacterium 7.447505681 7.253069202 6.925526855 7.234281201 7.502967929 73660979 PceA Organic Remediation Others Dehalococcoides sp. CBDB1 7.054918585 7.109348781 7.1539536 7.048957638 238717823 amyA Carbon cycling Carbon degradation Starch Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 7.107510503 7.282603172 6.996662063 6.895106213 7.462306241 259418537 glnA Stress Nitrogen limitation Silicibacter sp. TrichCH4B 6.837448404 7.134238119 251793696 sigma_32 Stress Sigma factors Aggregatibacter aphrophilus NJ8700 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Aggregatibacter;species:Aggregatibacter aphrophilus; 6.945380699 7.119965238 6.696668746 7.324943848 190688467 ppk Phosphorus Phosphorus utilization Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 7.945662112 7.669117564 7.24577569 7.422323496 7.757212086 7.830730455 1747426 catB Organic Remediation Aromatics BTEX and related aromatics Ralstonia eutropha superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.617524936 7.686458392 7.18474737 7.676488901 198040007 nbaC Organic Remediation Aromatics Nitoaromatics Burkholderia cenocepacia J2315 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 7.566729001 7.521085497 7.559077689 7.7869533 7.428420434 7.624976043 126008154 gyrB_gene Bioleaching other category Ferroplasma acidarmanus fer1 7.131371088 7.217084709 7.091116682 7.720248004 10443294 thmAB Organic Remediation Others Pseudonocardia sp. K1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia; 7.606676471 7.595179135 7.268467729 7.572167369 7.709679387 7.520948759 212685745 pstS Stress Phosphate limitation Providencia alcalifaciens DSM 30120 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 6.937661287 6.991308138 15022487 phenol_oxidase Carbon cycling Carbon degradation Lignin Botryotinia fuckeliana superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia; 7.48945507 7.631605246 118000002 phtA Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.609526342 7.42432786 6.997386019 7.229783479 7.334739764 7.4258835 56461676 ahpC Stress Oxygen stress Idiomarina loihiensis L2TR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina loihiensis; 7.087573357 7.177206191 7.133608703 7.400905462 7.103347398 6.834880738 116227135 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 7.441901738 7.72141992 53987084 ureC Nitrogen Ammonification Pseudomonas sp. T02-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.728414636 7.634582078 7.460466199 7.211593488 7.62571287 7.11768648 89902704 aclB Carbon cycling Carbon fixation Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 7.397778825 7.69625485 7.057040384 7.5496135 7.539440493 7.490094698 7.841018085 110285690 nreB Metal Resistance Nickel Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 7.381541654 7.803528233 7.224911791 7.116630631 120611198 silC Metal Resistance Silver Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 7.560727497 7.584568114 7.501412347 7.799516199 7.424354075 7.860958006 3550425 gyrB other category gyrB Methylovorus sp. SS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylovorus; 7.035230981 7.184921341 7.33725747 7.117929979 209898324 catB Organic Remediation Aromatics BTEX and related aromatics Enterobacter cancerogenus ATCC 35316 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 7.076414101 7.462466599 7.495173004 7.354813403 73534068 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 8.176634151 7.953296762 7.780322284 8.380265784 8.27455903 8.246085107 7.706091946 77165210 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nitrosococcus oceani ATCC 19707 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 6.700777943 6.990277785 78484894 Arylest Organic Remediation Aromatics Other aromatics Thiomicrospira crunogena XCL-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Thiomicrospira;species:Thiomicrospira crunogena; 6.608005206 7.329242738 73763102 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.522775609 7.247066837 7.409618516 7.57938092 126105545 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.045280656 7.141022347 7.45005499 7.284526915 7.12527913 149927072 phoB Stress Phosphate limitation Limnobacter sp. MED105 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 7.015046675 6.933314078 7.487197724 94968630 pilin virulence pilin Candidatus Koribacter versatilis Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 7.163638627 7.741660738 269959804 napA Nitrogen Dissimilatory N reduction Vibrio harveyi 1DA3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 7.262227913 7.485245891 6.709155408 7.584131788 7.280513599 7.037042192 114562680 cytochrome Energy process Energy process Shewanella frigidimarina NCIMB 400 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella frigidimarina; 7.005881643 7.183497375 139003691 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 6.937635248 7.047973492 148628300 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 7.407531127 7.462089231 7.403756925 7.079483194 7.703118247 7.315092272 7.248930061 7.430421404 110283398 nagG Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 6.915240826 7.152992859 116104636 amyA Carbon cycling Carbon degradation Starch Lactobacillus casei ATCC 334 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus casei; 7.035793628 7.214831483 94470923 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.6364667 7.513821207 7.383553063 7.883006121 7.758583068 7.659290463 7.807546679 2924232 integrase_serine Bacteria phage REPLICATION Lactococcus phage TP901-1 order:Caudovirales;family:Siphoviridae; 7.648775263 8.002339557 7.183516546 7.55581511 7.725608176 8.101848121 32895040 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 6.962324119 7.526879807 6.688715655 7.097597803 158332654 obgE Stress Radiation stress Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 8.12644416 7.970289416 7.983054587 8.080072243 8.296093284 7.662559692 7.846668293 227849172 pstB Stress Phosphate limitation Lactobacillus johnsonii ATCC 33200 6.756266379 6.892473742 6.726562347 7.171315912 257777196 pstC Stress Phosphate limitation Desulfotomaculum acetoxidans DSM 771 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum acetoxidans; 7.109150608 7.032147076 7.405283714 7.26447868 269096232 ara Carbon cycling Carbon degradation Hemicellulose Sanguibacter keddieii DSM 10542 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Sanguibacteraceae;genus:Sanguibacter;species:Sanguibacter keddieii; 7.413655231 7.450572663 7.185324452 6.95715582 7.659861534 7.677387605 7.325403846 269925943 amyA Carbon cycling Carbon degradation Starch Thermobaculum terrenum ATCC BAA-798 superkingdom:Bacteria;genus:Thermobaculum;species:Thermobaculum terrenum; 6.952994224 7.228464647 260322427 amoA Nitrogen Nitrification superkingdom:Bacteria; 7.280037437 7.645851624 7.649253585 7.440810821 7.722318613 7.393764326 7.446722514 7.69207055 118686347 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Marinomonas sp. MWYL1 7.231040335 7.418314558 149917806 sigma_70 Stress Sigma factors Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 7.128707938 7.466109573 7.863750474 7.520306745 8.076184297 7.671245969 7.365352603 157409420 dehH109 Organic Remediation Chlorinated solvents Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 7.001250829 7.243510527 7.443820039 7.379883958 7.273889101 7.337376085 68535067 gyrB other category gyrB Corynebacterium jeikeium K411 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 7.328003903 7.497344819 195975627 srt virulence surface protein Streptococcus equi subsp. zooepidemicus MGCS10565 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus equi; 6.866930206 6.979469191 6.858642098 7.32256641 184197367 mer Metal Resistance Mercury Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.732805863 7.61943942 7.479545198 7.652627301 7.380300009 7.457355873 7.722245897 156533027 cydB Stress Oxygen limitation Cronobacter sakazakii ATCC BAA-894 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 7.033281286 7.217422137 14994660 amoA Nitrogen Nitrification superkingdom:Bacteria; 7.545117028 7.577975418 7.44352959 7.44901965 7.575398572 259167405 pstC Stress Phosphate limitation Lactobacillus iners DSM 13335 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus iners; 7.676139655 7.31059509 229824058 sigma_70 Stress Sigma factors Catonella morbi ATCC 51271 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Catonella;species:Catonella morbi; 6.98883592 7.445431731 6.93753623 7.696702861 71370773 glnA Stress Nitrogen limitation uncultured cyanobacterium 7.077447736 7.326645572 194311115 ppx Phosphorus Phosphorus utilization Prosthecochloris aestuarii DSM 271 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Prosthecochloris;species:Prosthecochloris aestuarii; 7.813659733 7.851159852 63029742 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.632141438 7.640574426 7.513231486 7.557653149 50876712 tutFDG Organic Remediation Aromatics BTEX and related aromatics Desulfotalea psychrophila LSv54 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfotalea;species:Desulfotalea psychrophila; 6.9274767 6.682044511 7.533323842 6.970341981 6.798032003 229379120 glnA Stress Nitrogen limitation Oxalobacter formigenes OXCC13 7.107922699 7.037100154 104304993 nirK Nitrogen Denitrification uncultured denitrifying bacterium superkingdom:Bacteria; 7.355001464 7.39673334 7.281888267 7.608301997 120553862 sigma_70 Stress Sigma factors Marinobacter aquaeolei VT8 7.211961857 7.142382146 6.693285213 7.527888618 169003294 Al Metal Resistance Aluminum Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.524741926 7.334748526 7.562100511 7.100388813 7.97858686 89085746 pcc Carbon cycling Carbon fixation Bacillus sp. NRRL B-14911 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.187366878 7.056261708 7.31451334 7.321799389 1200177 BADH Organic Remediation Aromatics Other aromatics superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 7.283737913 7.094392135 116092548 gyrB other category gyrB Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 7.239505385 7.290507421 7.598969663 7.45466143 94495854 fnr Stress Oxygen stress Sphingomonas sp. SKA58 7.437558709 7.535362672 7.545569393 8.047772449 56479030 narJ Stress Oxygen limitation Aromatoleum aromaticum EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 7.901277872 7.41554387 8.051307603 8.308428693 238704264 SMR_antibiotics Antibiotic resistance transporter Yersinia aldovae ATCC 35236 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia aldovae; 7.00141109 7.42696796 197282208 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.646626724 7.580544044 7.425117604 7.483096196 7.47152821 7.423098806 7.772872289 256798744 pstB Stress Phosphate limitation Anaerococcus prevotii DSM 20548 7.250554061 6.863954096 167347060 sigma_32 Stress Sigma factors Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 7.261986357 7.324638191 7.292967721 6.926123758 89512766 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.041754333 7.245597462 7.056238923 7.013967058 7.497216724 7.205320983 7.168117487 7.406539123 118135538 TerD Metal Resistance Tellurium Clostridium novyi NT 7.24845622 7.295272148 7.067817397 6.972718872 7.505506286 7.23269872 7.271177384 114047799 narJ Stress Oxygen limitation Shewanella sp. MR-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 7.041044701 7.05405391 116249514 MFS_antibiotic Antibiotic resistance transporter Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.34409886 7.717229851 7.191735242 7.493354641 7.656302453 546910 mnp Carbon cycling Carbon degradation Lignin Phanerochaete chrysosporium 6.807710432 7.513167888 6.997386019 6.835062169 7.581469752 6.82678557 6.944997967 156869477 pcc Carbon cycling Carbon fixation Clostridium leptum DSM 753 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 7.004002742 7.258059384 7.2263857 7.315923635 154159591 oxdB Organic Remediation Aromatics Nitoaromatics Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 7.365903982 7.336014397 7.165810318 7.572853656 7.29765796 7.107606067 7.381759414 78102103 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.709287551 7.562007548 7.504630118 7.371207517 33517199 sigma_70 Stress Sigma factors Candidatus Blochmannia floridanus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Candidatus Blochmannia; 6.888118842 7.022199826 215512185 norB Nitrogen Denitrification Moraxella catarrhalis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Moraxella; 7.059170888 7.197347815 7.176671407 7.437848021 258583362 endochitinase Carbon cycling Carbon degradation Chitin Vibrio mimicus VM603 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 7.236620865 7.174524549 6.918529324 6.791916516 46201568 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 7.779503717 7.598096911 7.751758628 7.537811515 7.480469171 7.545925844 138896772 cellobiase Carbon cycling Carbon degradation Cellulose Geobacillus thermodenitrificans NG80-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermodenitrificans; 7.554887447 7.440100784 7.318826977 6.942816268 7.115529839 7.669169524 780717 nifH Nitrogen Nitrogen fixation unidentified marine eubacterium superkingdom:Bacteria; 7.184715668 7.088993329 7.207838053 114338385 pimF Organic Remediation Aromatics Aromatic carboxylic acid Syntrophomonas wolfei subsp. wolfei str. Goettingen superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Syntrophomonadaceae;genus:Syntrophomonas;species:Syntrophomonas wolfei; 7.537754462 7.299257605 7.405616923 7.365972008 7.65520537 182680144 sigma_24 Stress Sigma factors Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 7.451222041 7.325946943 7.029843301 7.478513963 157846614 aclB Carbon cycling Carbon fixation Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 6.762574462 7.251990253 149935194 proV Stress Osmotic stress Parabacteroides distasonis ATCC 8503 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides distasonis; 7.669605847 7.750888641 7.503367462 8.046293616 7.851993135 7.940585547 7.902215153 189191946 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7.146028639 7.057473836 119898813 proO Organic Remediation Aromatics Other aromatics Azoarcus sp. BH72 7.615432188 7.978321995 8.055404321 8.033011373 8.093671197 8.208588189 7.986287858 134298577 pstB Stress Phosphate limitation Desulfotomaculum reducens MI-1 7.130570691 7.395861904 6.957747325 7.290057598 7.480000302 7.351630935 7.391337861 7.346733109 109674954 ZntA Metal Resistance Zinc Campylobacter curvus 525.92 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter curvus; 7.256714407 7.610127117 7.750923417 7.258808263 7.747101586 7.120521488 7.087423417 261210863 MFS_antibiotic Antibiotic resistance transporter Vibrio sp. RC341 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.044405948 7.078853203 218130278 ChrA Metal Resistance Chromium Bacteroides eggerthii DSM 20697 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides eggerthii; 7.18273858 7.204434033 6.865481911 7.542928239 7.030665771 7.303968985 67542697 ArsA Metal Resistance Arsenic Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 7.149812177 7.24995211 6.98089469 7.353642329 7.200478354 7.190894101 7.813571527 147886212 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 7.688451499 7.456737744 68515031 pcc Carbon cycling Carbon fixation Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 7.296860893 7.171183523 118671244 PobA Organic Remediation Aromatics Aromatic carboxylic acid Delftia acidovorans SPH-1 7.49724894 7.432550705 7.044572876 7.498115966 7.117695624 7.303729385 145309477 gyrB other category gyrB Alicyclobacillus vulcanalis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus; 7.79844704 7.9830026 7.381283414 8.004467829 7.897910925 7.699981702 8.165013367 255652797 amoA Nitrogen Nitrification superkingdom:Archaea; 7.504394802 8.220107424 7.872374988 7.551708997 7.929870763 17132873 obgE Stress Radiation stress Nostoc sp. PCC 7120 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc; 6.731710517 7.313417765 226360339 pcc Carbon cycling Carbon fixation Rhodococcus opacus B4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 7.270677735 7.144447587 468508 Al Metal Resistance Aluminum Staphylococcus aureus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus; 7.116266305 7.272798928 6.957712999 7.321368744 7.20266121 7.756798843 56178728 AceB Carbon cycling Carbon degradation others Idiomarina loihiensis L2TR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina loihiensis; 7.151631521 7.070760146 114540414 pcc Carbon cycling Carbon fixation Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.391316712 7.652606404 7.298145666 7.480150994 7.387124895 7.522357924 8.252261121 68566780 ferredoxin_II Bioleaching Electron transport Sulfolobus acidocaldarius DSM 639 7.286630804 7.169919841 6.98184066 7.152267002 260608915 sigma_24 Stress Sigma factors Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 7.151928662 6.883845372 156741098 CopA Metal Resistance Copper Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 7.400636093 7.510641837 7.424255911 7.18311226 7.265913885 7.203988396 39937276 AceB Carbon cycling Carbon degradation others Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.671523217 7.397933377 7.871689815 7.713148747 7.66225212 7.598784851 7.682559483 14495033 clpC Stress Protein stress Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 7.464885477 7.704957394 7.508372673 7.632287796 7.294474266 7.612945075 7.292771268 77867477 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 7.080373388 7.201450023 7.28141862 7.430604789 58581183 silC Metal Resistance Silver Xanthomonas oryzae pv. oryzae KACC10331 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 7.152540274 7.056765036 7.723326499 7.134722155 7.212931162 7.635967742 227369298 xylA Carbon cycling Carbon degradation Hemicellulose Chryseobacterium gleum ATCC 35910 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Chryseobacterium;species:Chryseobacterium gleum; 7.035338277 7.119061731 58200956 proO Organic Remediation Aromatics Other aromatics Comamonas sp. DJ-12 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 7.302700357 7.494847625 7.164494292 7.705816088 7.570945462 7.460971333 7.659224772 239917841 glnA Stress Nitrogen limitation Micrococcus luteus NCTC 2665 7.655233051 7.532655444 7.777923239 7.750657625 161525115 fnr Stress Oxygen stress Burkholderia multivorans ATCC 17616 7.901188839 7.596270471 7.733822003 7.543385995 160364623 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.510564631 7.722771505 7.888083499 7.165604631 8.209774749 7.213454446 7.305278284 7.279988114 157411454 napA Nitrogen Dissimilatory N reduction uncultured prokaryote 7.127727347 7.405511493 7.543110871 7.266081758 7.545748455 90580866 oxyR Stress Oxygen stress Vibrio angustum S14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium angustum; 7.024795018 7.618452893 86609368 pstB Stress Phosphate limitation Synechococcus sp. JA-2-3B'a(2-13) 7.506452111 7.664040408 7.2282725 7.022962289 7.155986961 114553762 rubisco Carbon cycling Carbon fixation Mariprofundus ferrooxydans PV-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Zetaproteobacteria;order:Mariprofundales;family:Mariprofundaceae;genus:Mariprofundus;species:Mariprofundus ferrooxydans; 7.090951728 6.826182 93005718 ChrA Metal Resistance Chromium Psychrobacter cryohalolentis K5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter cryohalolentis; 7.418525495 7.245259639 7.492532278 7.438256713 7.182826199 7.119704828 222438906 nhh Organic Remediation Aromatics Nitoaromatics Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 7.140879349 7.504595572 7.506101577 7.297357685 7.31555993 7.491893668 7.420369118 227493606 pstB Stress Phosphate limitation Mobiluncus curtisii ATCC 43063 7.061662959 7.470477334 119451920 exaA Organic Remediation Chlorinated solvents marine gamma proteobacterium HTCC2143 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.261393617 7.09481744 6.971957407 7.384926787 7.242115466 7.271076809 159184608 MFS_antibiotic Antibiotic resistance transporter Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8.273570514 8.175247658 8.442962896 8.666480353 8.721526309 8.44335958 8.943274882 254508362 nplT Carbon cycling Carbon degradation Starch Vibrio parahaemolyticus 16 7.538876618 7.779496212 7.338044403 7.603511103 7.730768188 7.523466778 7.58128873 7.45258514 92117474 ChrA Metal Resistance Chromium Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 7.292606281 7.585884424 7.414352825 6.748037293 7.010475756 7.2745601 13815858 glnA Stress Nitrogen limitation Sulfolobus solfataricus P2 7.086189891 7.067923115 84379644 endochitinase Carbon cycling Carbon degradation Chitin Vibrio splendidus 12B01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 6.592728622 7.302602164 170134505 todC Organic Remediation Aromatics BTEX and related aromatics Burkholderia ambifaria IOP40-10 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 7.515702673 7.290219899 6.962683205 7.363460302 7.593175652 7.535679824 7.497109994 7.216573874 183226617 BADH Organic Remediation Aromatics Other aromatics Lactobacillus fermentum IFO 3956 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus fermentum; 7.94925715 8.19579982 7.824326403 8.370034543 7.896612217 8.177803271 7.960045537 7.909937514 146305090 type_III_secretion virulence secretion Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 8.024331276 8.027575696 8.28383076 8.470626183 8.677877618 8.559942422 8.286449213 113882217 pilin virulence pilin Synechococcus sp. CC9311 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 6.881771033 7.189725215 34105459 CorC Metal Resistance Cobalt Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 7.420461924 7.505913622 7.538639056 7.060370832 3257353 rubisco Carbon cycling Carbon fixation Pyrococcus horikoshii OT3 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Pyrococcus;species:Pyrococcus horikoshii; 7.084026883 7.215453627 110320048 endochitinase Carbon cycling Carbon degradation Chitin Francisella tularensis subsp. tularensis FSC 198 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Francisellaceae;genus:Francisella;species:Francisella tularensis; 7.085448071 7.210548695 261409705 SMR_antibiotics Antibiotic resistance transporter Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.136613684 7.34214464 7.634889016 7.427542526 7.795497675 7.521366188 7.533619825 8.069239014 145968726 fnr Stress Oxygen stress Lactococcus lactis 6.89733843 7.045831632 7.183775957 7.018759115 7.241279388 154253034 exaA Organic Remediation Chlorinated solvents Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 7.106272893 7.529021091 7.289564519 7.074182634 7.18716948 7.34721374 226240923 glnA Stress Nitrogen limitation Rhodococcus opacus B4 7.456218462 7.596586048 7.171802835 7.716999428 7.790342562 7.407769667 7.460112045 95931306 pcc Carbon cycling Carbon fixation Desulfuromonas acetoxidans DSM 684 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Desulfuromonadaceae;genus:Desulfuromonas;species:Desulfuromonas acetoxidans; 6.77472421 7.313178003 6.605073293 7.812493471 258573017 endochitinase Carbon cycling Carbon degradation Chitin Uncinocarpus reesii 1704 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 7.649192596 7.629613631 7.31468828 7.749901139 7.408567232 7.201215876 7.306112281 167630818 phoA Stress Phosphate limitation Heliobacterium modesticaldum Ice1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Heliobacteriaceae;genus:Heliobacterium;species:Heliobacterium modesticaldum; 7.210599199 7.177183474 196113939 SMR_antibiotics Antibiotic resistance transporter Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 7.07882779 7.173107732 6.642318049 7.328984487 7.178384383 7.148180998 238721582 nrfA Nitrogen Dissimilatory N reduction Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 7.652846125 6.968589851 6.970535807 7.279595627 28272783 amyA Carbon cycling Carbon degradation Starch Lactobacillus plantarum WCFS1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus plantarum; 7.086178183 6.938494866 148654469 fnr Stress Oxygen stress Roseiflexus sp. RS-1 7.600512037 7.721177499 7.336151557 7.705064574 7.96149807 7.574169023 7.825286875 209517921 mhpC Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.678640726 7.90452412 7.649135301 7.458950427 7.414693155 7.479784933 7.363209202 116671987 cellobiase Carbon cycling Carbon degradation Cellulose Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.760817531 7.450260828 7.344921336 8.033668434 7.848275321 7.702660566 7.67656287 7.827284202 71383927 nasA Nitrogen Assimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.273052753 7.649175312 19703648 nifH Nitrogen Nitrogen fixation Fusobacterium nucleatum subsp. nucleatum ATCC 25586 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteria;order:Fusobacteriales;family:Fusobacteriaceae;genus:Fusobacterium;species:Fusobacterium nucleatum; 7.935165913 7.686697608 120562043 pstC Stress Phosphate limitation Desulfovibrio vulgaris DP4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 6.939342862 7.309067758 7.33261491 7.324852469 259032947 sigma_24 Stress Sigma factors Mesorhizobium opportunistum WSM2075 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 7.184036413 7.361588389 118028120 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.434474855 7.589736689 7.050860862 7.537076503 7.61049826 7.587498845 206676135 HBH Organic Remediation Aromatics BTEX and related aromatics Rhodobacterales bacterium HTCC2083 7.328143118 7.381665985 7.342022728 7.28934606 259171782 obgE Stress Radiation stress Erysipelothrix rhusiopathiae ATCC 19414 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichi;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Erysipelothrix;species:Erysipelothrix rhusiopathiae; 7.56702563 7.202095557 195537600 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 6.848710051 7.208964482 229918268 hly virulence hemolysin Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 7.36768014 7.384324249 7.060247702 7.590857846 7.233567833 7.451287982 113868633 SMR_antibiotics Antibiotic resistance transporter Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 7.168543885 7.568235638 7.044430283 7.395142832 7.651092408 7.534458224 7.34581466 68537026 AceB Carbon cycling Carbon degradation others Corynebacterium jeikeium K411 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 7.17241075 7.206151643 7.560305316 8.065753069 89899097 vanA Carbon cycling Carbon degradation Others Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 7.328289694 7.230958626 7.174554333 7.639280895 7.655342577 7.494205079 7.511985746 238755808 B_lactamase_C Antibiotic resistance Beta-lactamases Yersinia ruckeri ATCC 29473 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia ruckeri; 7.377574684 7.065181743 7.191736067 7.41301228 226836039 gdh Nitrogen Ammonification Acinetobacter sp. ATCC 27244 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 7.489736426 7.076748255 118668313 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.223514535 7.912824631 7.584161292 6.963799265 7.904464158 225575564 pstS Stress Phosphate limitation Blautia hydrogenotrophica DSM 10507 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Blautia;species:Blautia hydrogenotrophica; 7.007612799 7.096234482 149948822 CadA Metal Resistance Cadmium Alkaliphilus metalliredigens QYMF 7.527356773 7.450011122 7.251452999 7.185107362 7.336799853 7.172928464 7.548862637 116334775 ara Carbon cycling Carbon degradation Hemicellulose Lactobacillus brevis ATCC 367 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus brevis; 7.387828955 7.661049921 7.985359773 6.967378196 8.141761998 7.290416648 7.797470811 28627875 CadA Metal Resistance Cadmium Halobacillus sp. MSA 234 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Halobacillus; 7.064750107 7.296955119 77359277 pstA Stress Phosphate limitation Pseudoalteromonas haloplanktis TAC125 7.209678701 7.312699318 6.947401908 7.493702253 7.105676565 7.091894424 116264933 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Polynucleobacter sp. QLW-P1DMWA-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 6.700110498 7.583188741 150837675 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Marinomonas sp. MWYL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 7.028419008 7.066986344 89345069 fnr Stress Oxygen stress Rhodoferax ferrireducens T118 7.285502284 7.498961972 7.566194679 6.94754145 7.201349232 7.19296253 7.88903192 33340618 ppx Phosphorus Phosphorus utilization Pantoea agglomerans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 7.118099596 7.280570075 7.045382943 7.631539624 7.256173137 7.200257196 156112449 katE Stress Oxygen stress Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 7.166803404 7.350124731 7.143193838 7.096732449 50429003 endochitinase Carbon cycling Carbon degradation Chitin Lysobacter enzymogenes superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Lysobacter; 7.029891199 7.271033677 6.79277425 6.647711165 7.445643006 224437326 nrfA Nitrogen Dissimilatory N reduction Helicobacter cinaedi CCUG 18818 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter cinaedi; 6.946097658 7.362619406 6.820155218 6.891534456 7.614904306 7.214831418 7.527052828 113476655 tfdA Organic Remediation Aromatics Chlorinated aromatics Trichodesmium erythraeum IMS101 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Trichodesmium;species:Trichodesmium erythraeum; 7.152111431 7.031055247 7.062771305 7.477831827 7.372492912 7.159118057 7.1753687 90954573 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.35516242 7.295460229 7.209858524 7.270535076 7.538941415 69257830 ureC Nitrogen Ammonification Magnetococcus sp. MC-1 superkingdom:Bacteria;phylum:Proteobacteria;genus:Magnetococcus; 7.101744497 7.192259331 6.846748806 6.519600402 7.440833317 115387046 pheA Organic Remediation Aromatics Other aromatics Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.280975729 7.344597107 7.266598602 7.170542432 7.532159181 7.042813906 7.244212374 157148781 arcB Stress Oxygen limitation Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 7.088184389 7.111897374 145701467 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Metallosphaera sedula DSM 5348 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Metallosphaera;species:Metallosphaera sedula; 7.507841385 7.351792136 145703254 ABC_transporter_I Bioleaching other category Metallosphaera sedula DSM 5348 6.994735596 6.986899709 91716277 obgE Stress Radiation stress Shewanella denitrificans OS217 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella denitrificans; 7.557665731 7.218353632 211586109 katE Stress Oxygen stress Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 7.448881567 7.629264814 114772024 nrfA Nitrogen Dissimilatory N reduction alpha proteobacterium HTCC2255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 6.7889678 7.050132355 170718911 glnA Stress Nitrogen limitation Haemophilus somnus 2336 6.923060029 7.311117388 264675077 fnr Stress Oxygen stress Caulobacter segnis ATCC 21756 7.932272806 8.109605409 7.785328801 7.950611489 7.871725137 8.028623989 7.571565879 166858195 iro virulence Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.094513472 7.645164175 7.261590296 7.141827094 7.786281895 227479898 SMR_antibiotics Antibiotic resistance transporter Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 6.766433123 7.468773873 6.935611544 7.220560929 282880165 obgE Stress Radiation stress Prevotella timonensis CRIS 5C-B1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella timonensis; 7.009439415 7.163661168 262396242 endochitinase Carbon cycling Carbon degradation Chitin Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.610562657 7.47784069 7.144946705 7.551692054 7.707017754 7.439836584 7.433057633 150857402 nitA Organic Remediation Aromatics Other aromatics Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 7.144757788 7.369714928 6.819680632 7.2853318 4204379 catechol_B Organic Remediation Aromatics Other aromatics Sphingomonas sp. A8AN3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 7.730567035 7.353001558 7.38818669 7.297660379 7.935836935 94471281 narG Nitrogen Denitrification uncultured bacterium 7.124641044 7.183573305 6.773134147 7.327154971 7.032996078 6.975003147 260561848 srt virulence surface protein Lactobacillus jensenii SJ-7A-US superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus jensenii; 6.562005237 6.767487492 7.386038869 46399562 CadA Metal Resistance Cadmium Candidatus Protochlamydia amoebophila UWE25 superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Parachlamydiaceae;genus:Candidatus Protochlamydia;species:Candidatus Protochlamydia amoebophila; 7.237435717 7.111287662 7.300440502 7.47253198 114340340 gyrB other category gyrB Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 7.346119129 7.197654829 78610781 SMR_antibiotics Antibiotic resistance transporter Lactobacillus sakei subsp. sakei 23K superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus sakei; 7.543933384 7.939488827 7.458468887 7.363501248 50121300 alkK Organic Remediation Others Erwinia carotovora subsp. atroseptica SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 7.218104519 7.037509893 6.995178501 6.761655104 6.897669247 227181934 oxyR Stress Oxygen stress Corynebacterium glucuronolyticum ATCC 51866 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glucuronolyticum; 7.023963665 7.02635606 269834651 endochitinase Carbon cycling Carbon degradation Chitin Vibrio harveyi 1DA3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 6.850938031 7.017089376 227438045 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 6.964377946 6.95945832 240295303 amyA Carbon cycling Carbon degradation Starch Actinobacillus minor NM305 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus minor; 6.882287666 7.121300511 14276016 pheA Organic Remediation Aromatics Other aromatics uncultured microorganism PCRLD12 superkingdom:Bacteria; 7.924434218 7.787771158 7.372882106 7.300030772 8.017786745 67525319 ZntA Metal Resistance Zinc Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.024557172 7.352727587 218249051 catB Organic Remediation Aromatics BTEX and related aromatics Cyanothece sp. PCC 8801 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.038619681 6.91202474 6.774307939 7.344724334 209907675 exochitinase Carbon cycling Carbon degradation Chitin Enterobacter cancerogenus ATCC 35316 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 7.079822145 7.249185745 6.773368443 6.902340879 7.484207451 7.326524377 7.581566285 150421378 AceB Carbon cycling Carbon degradation others Vibrio cholerae RC385 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 7.117571981 7.279149238 7.056534663 6.959778656 7.42271721 149917081 sigma_24 Stress Sigma factors Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 7.827042703 7.601332905 7.238219039 7.430976205 7.584342028 226834313 opuE Stress Osmotic stress Actinomyces urogenitalis DSM 15434 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces urogenitalis; 6.8948442 7.246271709 6.789522055 7.412909393 2773302 xylanase Carbon cycling Carbon degradation Hemicellulose Selenomonas ruminantium superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Selenomonas; 7.244101381 7.409896016 7.190769427 7.915352962 255344352 sigma_70 Stress Sigma factors Pedobacter heparinus DSM 2366 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter;species:Pedobacter heparinus; 7.198302993 7.018103497 7.145915076 7.300065994 211961593 bclA Organic Remediation Aromatics Aromatic carboxylic acid Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 7.551293516 7.720864276 7.343485483 7.208844856 7.680259903 7.643818436 7.816966731 7.496275614 126742278 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 7.706695112 7.341981853 7.454136315 7.485701577 7.724714063 193078794 phenol_oxidase Carbon cycling Carbon degradation Lignin Cyathus bulleri superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Nidulariaceae;genus:Cyathus; 6.654807713 6.813217445 68056074 pulA Carbon cycling Carbon degradation Starch Exiguobacterium sibiricum 255-15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 7.391815603 7.281433668 7.425305972 6.905911803 227274789 B_lactamase_C Antibiotic resistance Beta-lactamases Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 7.486041254 7.038883046 7.191160106 7.334732834 256823257 iro virulence Kangiella koreensis DSM 16069 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Kangiella;species:Kangiella koreensis; 7.120730167 7.080863138 268316208 hly virulence hemolysin Rhodothermus marinus DSM 4252 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 8.412104557 8.400136544 7.945286009 8.217209633 8.308532862 8.357742441 8.351496878 25169061 alkH Organic Remediation Other Hydrocarbons Arthrobacter nicotinovorans superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 6.86489452 7.03028801 119963044 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 7.571368472 7.729054088 7.88145115 7.672294727 7.780022139 7.88748124 8.179599599 224520552 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Bacteroides cellulosilyticus DSM 14838 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 8.08840265 8.071277561 8.27722871 8.040015243 7.999128622 8.090719132 7.755926975 126348649 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces ambofaciens ATCC 23877 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ambofaciens; 7.033387576 7.616010449 7.23977602 6.944547637 7.709007388 104784124 SMR_antibiotics Antibiotic resistance transporter Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 7.591094659 7.757109427 7.677875753 8.034450598 7.913380506 7.718358426 7.972569793 91777300 ChrA Metal Resistance Chromium Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.228931886 7.438006072 116251365 ppk Phosphorus Phosphorus utilization Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8.052601396 7.708935215 7.68481688 7.874923202 7.95591688 7.541036252 7.316612949 269830134 AceB Carbon cycling Carbon degradation others Vibrio alginolyticus 40B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 7.929758438 7.977873493 7.669693922 8.04137431 7.994595356 7.855896909 7.996461339 7.334353661 227190143 glnR Stress Nitrogen limitation Lactobacillus brevis subsp. gravesensis ATCC 27305 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus brevis; 6.685217388 7.03070267 196156145 AceA Carbon cycling Carbon degradation others Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 7.414514896 7.547576226 255266008 ara Carbon cycling Carbon degradation Hemicellulose Bryantella formatexigens DSM 14469 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;species:Bryantella formatexigens; 7.021301618 7.252925371 169803459 cadBD Metal Resistance Cadmium Leuconostoc citreum KM20 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc citreum; 6.750783501 6.762538768 110678013 ahpC Stress Oxygen stress Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 7.313097839 7.5920048 7.309298607 7.075541132 7.67874516 7.486240482 8.176539237 83766434 pheA Organic Remediation Aromatics Other aromatics Aspergillus oryzae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 6.922657273 7.146044191 120405633 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 7.277620532 7.015337848 50236431 B_lactamase Antibiotic resistance Beta-lactamases Ralstonia pickettii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 7.591913417 7.620138252 7.730329026 8.042666721 7.602740793 7.573428571 7.861921975 146410496 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.300861794 7.113905344 7.039268531 7.192117252 153804418 obgE Stress Radiation stress Campylobacter hominis ATCC BAA-381 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter hominis; 7.264315382 6.965702472 6.787481939 6.552742057 7.544678405 7.036454547 6.840941878 7.138422682 27380076 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.236590699 7.42520009 7.270859912 7.486562053 7.624596389 7.719309439 7.393140486 7.37217504 153009500 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 7.009136171 7.071326047 7.260727752 7.039762472 7.620464592 171465286 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.196710442 7.041558772 6.983736404 197103351 CopA Metal Resistance Copper Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 8.054430283 8.049329912 8.560189043 8.163118929 7.748734888 8.21333068 8.283908758 90310586 obgE Stress Radiation stress Psychromonas sp. CNPT3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas; 7.141321275 7.195247626 7.642840738 7.949954279 238786434 phoB Stress Phosphate limitation Yersinia bercovieri ATCC 43970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 7.07348314 6.921252765 163814058 obgE Stress Radiation stress Coprococcus eutactus ATCC 27759 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Coprococcus;species:Coprococcus eutactus; 7.754423352 7.678204615 7.441699321 7.323489851 8.041616611 7.312297671 7.768289484 7.696698023 33640783 todF Organic Remediation Others Prochlorococcus marinus str. MIT 9313 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 7.273379029 7.496410917 6.783542863 7.615068023 7.735909417 7.287642908 7.431815512 157691674 katE Stress Oxygen stress Bacillus pumilus SAFR-032 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pumilus; 7.469800104 7.351918428 7.422940421 7.320050112 7.460271306 7.432471846 7.22463343 227010842 pstB Stress Phosphate limitation Vibrio cholerae M66-2 7.397118961 7.502325485 7.081566543 7.104887307 117991639 nagG Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phytofirmans PsJN 8.029099452 7.932601818 8.117775498 8.067879102 7.807059644 8.271894171 8.001679226 120402016 bphA Organic Remediation Aromatics Polycyclic aromatics Mycobacterium vanbaalenii PYR-1 7.742407874 7.399324481 7.353290982 7.741701477 7.680445729 7.769187888 209965454 sigma_32 Stress Sigma factors Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 7.402726836 8.544565648 7.974801148 8.229788603 8.398600581 194453385 fnr Stress Oxygen stress Lactobacillus reuteri 100-23 7.235402252 7.030178974 55469825 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.044301012 7.188610437 7.122013172 6.829348395 7.154782651 254446362 mannanase Carbon cycling Carbon degradation Hemicellulose Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 7.612298614 7.720695635 7.670684002 6.90804346 7.159350675 7.13350729 7.595765832 16759692 ZitB Metal Resistance Zinc Salmonella enterica subsp. enterica serovar Typhi str. CT18 7.438482717 7.145487652 7.11614036 7.67989438 7.943993299 7.643413182 7.740166454 7.595670397 212537921 pheA Organic Remediation Aromatics Other aromatics Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 6.971672144 6.941989698 197736990 alkK Organic Remediation Others Fusobacterium nucleatum subsp. polymorphum ATCC 10953 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteria;order:Fusobacteriales;family:Fusobacteriaceae;genus:Fusobacterium;species:Fusobacterium nucleatum; 7.151742395 7.259529962 118173868 amyA Carbon cycling Carbon degradation Starch Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 7.352718822 7.286761619 6.888530309 6.90190276 7.427499133 122089325 SMR_antibiotics Antibiotic resistance transporter Yersinia enterocolitica subsp. enterocolitica 8081 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 7.646192449 7.622435263 7.544611916 7.842634291 260152071 narI Stress Oxygen limitation Brucella melitensis bv. 1 str. 16M superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Brucella;species:Brucella melitensis; 7.460193839 7.698905713 21234370 DNA_polymerase_type_I Bacteria phage REPLICATION Vibriophage VpV262 order:Caudovirales;family:Podoviridae; 7.279688101 7.585746057 7.432066349 7.767349377 73748868 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. CBDB1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.307131018 7.354789556 213536771 exoglucanase Carbon cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.335491458 7.061526544 7.191483675 7.119058776 7.652008102 157370568 ChrA Metal Resistance Chromium Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 7.861118196 8.061279245 8.374091706 8.174096805 8.286421641 8.711187644 8.480824021 160886455 ChrA Metal Resistance Chromium Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 7.367450537 7.673630131 7.695582757 7.29504892 7.837132311 7.494848545 7.041918829 7.448281958 218134889 pstB Stress Phosphate limitation Bacteroides pectinophilus ATCC 43243 6.971567183 6.943966758 39647930 mhpB Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.365797812 7.449555437 7.594193901 7.130275247 7.599089077 7.675566907 7.40558743 83309942 linC Organic Remediation Pesticides related compound Magnetospirillum magneticum AMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 6.806753152 7.337250504 149935173 pcc Carbon cycling Carbon fixation Parabacteroides distasonis ATCC 8503 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides distasonis; 7.268980099 7.113938169 7.494238932 7.565021873 113881425 ppx Phosphorus Phosphorus utilization Synechococcus sp. CC9311 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.216583196 7.487870573 268621368 obgE Stress Radiation stress Neisseria gonorrhoeae PID332 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria gonorrhoeae; 7.68846873 7.445508045 7.641696207 7.486498741 7.398757069 7.949933275 7.779465156 126630954 phoB Stress Phosphate limitation Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 7.323963092 7.344747637 145410223 dsrB Sulphur sulfite reductase Caldicellulosiruptor saccharolyticus DSM 8903 7.100840859 7.34477423 7.133347473 7.46803098 91691173 B_lactamase_C Antibiotic resistance Beta-lactamases Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.566171741 7.852790077 7.782734569 7.728072681 7.699426887 7.624785943 8.231762601 257465355 MATE_antibiotic Antibiotic resistance transporter Actinobacillus minor 202 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus minor; 6.875520853 6.958943491 7.500582901 7.105119183 7.057235441 170123403 phoA Stress Phosphate limitation Escherichia albertii TW07627 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 7.505096976 7.066776703 6.971156386 7.719099633 7.382622142 7.033653583 7.335720526 120594073 pstA Stress Phosphate limitation Polaromonas naphthalenivorans CJ2 7.210034649 7.291577054 157325003 single_strand_annealing_protein Bacteria phage REPLICATION Listeria phage A500 order:Caudovirales;family:Siphoviridae; 6.859119641 6.799536741 134265270 clpC Stress Protein stress Geobacillus thermodenitrificans NG80-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermodenitrificans; 7.174167589 7.472208774 7.247236339 7.319904851 109699452 vanA Carbon cycling Carbon degradation Others Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 7.227131776 7.469272598 7.202371931 7.771423724 7.793065443 7.756188736 7.375489195 7.708732406 116253007 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.230160663 7.430905535 197337231 dmsA Organic Remediation Others Vibrio fischeri MJ11 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Vibrio fischeri; 8.050780625 7.802575697 7.359225078 7.108989146 7.643841273 7.327146353 7.761911886 153011256 glnA Stress Nitrogen limitation Ochrobactrum anthropi ATCC 49188 7.378802252 7.296518914 37992761 B_lactamase_A Antibiotic resistance Beta-lactamases Serratia fonticola superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 7.061394425 7.288181436 7.169893872 7.006435197 7.447659462 7.41848947 7.341468638 7.81596481 187729571 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7.057132696 7.260840613 7.215834281 6.815621415 7.416762079 7.04532979 7.250005271 7.24244162 156857773 APS_AprA Sulphur adenylylsulfate reductase uncultured bacterium 7.156194083 7.094779931 6.818320058 7.017398236 7.495805659 6.991821327 7.211782481 146338741 pstC Stress Phosphate limitation Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 6.983565965 7.595597762 261746626 xylA Carbon cycling Carbon degradation Hemicellulose Leptotrichia goodfellowii F0264 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteria;order:Fusobacteriales;family:Fusobacteriaceae;genus:Leptotrichia;species:Leptotrichia goodfellowii; 7.385812875 7.902331767 7.159781822 7.423470665 7.56244667 7.495437871 7.032161307 255335204 phoB Stress Phosphate limitation Hyphomicrobium denitrificans ATCC 51888 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 7.191799101 7.200073309 6.881889237 7.033001687 7.382333283 7.208368881 6.968108593 37524237 pstB Stress Phosphate limitation Photorhabdus luminescens subsp. laumondii TTO1 7.099364134 6.668731006 7.176763177 169883528 sigma_70 Stress Sigma factors Microcystis aeruginosa PCC 7820 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 7.015531079 7.045435891 6.88608297 7.348659456 68304957 dsrB Sulphur sulfite reductase uncultured bacterium BAC13K9BAC 7.67887804 7.305542943 7.300722019 7.417824477 146303793 universal_stress_Family_protein_III Bioleaching other category Metallosphaera sedula DSM 5348 7.540849405 7.265785614 6.866141123 6.820501718 202078776 gyrB other category gyrB Edwardsiella tarda superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella; 7.940670013 7.933556302 7.365392801 7.995805399 7.516192516 7.730165538 8.032361205 33620655 Host_recognition_T2_type Bacteria phage HOST RECOGNITION/STRUCTURAL Enterobacteria phage RB49 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.547745448 7.239863533 7.623486016 227980762 hly virulence hemolysin Tsukamurella paurometabola DSM 20162 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 7.424874079 7.431755961 7.289500764 7.030204232 118469348 amyA Carbon cycling Carbon degradation Starch Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 7.455808081 7.836798708 7.726310148 7.108355588 7.938156157 118424370 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6.870803363 7.162557971 170122308 SMR_antibiotics Antibiotic resistance transporter Escherichia albertii TW07627 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 6.951477045 6.754337303 115525282 ppx Phosphorus Phosphorus utilization Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.432159892 7.279336957 70990396 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 7.995675562 7.914809348 7.52212165 7.340115418 7.665440606 7.858322169 8.264551728 10956988 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Novosphingobium aromaticivorans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 7.328502871 7.38621909 148997114 gyrB other category gyrB Streptococcus pneumoniae SP11-BS70 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus pneumoniae; 6.997139773 7.130115698 6.870865403 7.258980874 115399138 glucoamylase Carbon cycling Carbon degradation Starch Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.426397935 7.247493399 83944334 sigma_32 Stress Sigma factors Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 7.18798986 7.433835806 7.370022187 7.582800659 7.248330308 7.227316869 7.325746403 254475645 xylA Carbon cycling Carbon degradation Hemicellulose Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8.27020674 8.229720821 8.038104279 8.554378967 7.953777523 8.214368423 8.230088149 7.72086633 260686669 sigma_70 Stress Sigma factors Clostridium difficile R20291 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium difficile; 6.992547212 6.975516382 229328951 xylA Carbon cycling Carbon degradation Hemicellulose Geobacillus sp. Y412MC52 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.539735046 7.58697699 7.50911312 7.267581342 7.740509784 145254428 hdnO Organic Remediation Aromatics Heterocyclic aromatics Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.309855328 7.246166134 6.894834915 7.582124286 7.470558745 7.39006409 7.175885675 7.451454332 163734864 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 7.24772399 7.381344204 7.09465828 7.086009317 4204383 xylF Organic Remediation Aromatics BTEX and related aromatics Sphingomonas sp. A8AN3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 7.318487965 7.003733461 221721857 phn Organic Remediation Herbicides related compound Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.574419364 7.439720032 7.199131367 7.656229343 7.362893119 7.393500513 7.505902927 7.264559447 210617580 glnA Stress Nitrogen limitation Clostridium nexile DSM 1787 6.948245805 6.984536058 242222649 endoglucanase Carbon cycling Carbon degradation Cellulose Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 7.287988652 7.194694479 6.981482067 7.349326299 7.247041198 6.741875107 7.328707609 90411477 phn Organic Remediation Herbicides related compound Photobacterium profundum 3TCK superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 7.287099817 7.294458664 6.967671345 7.452428559 7.155786851 7.019296675 7.201388109 121603284 pstB Stress Phosphate limitation Polaromonas naphthalenivorans CJ2 7.724194594 7.677643651 7.402774066 7.420856658 150961434 endochitinase Carbon cycling Carbon degradation Chitin Pseudomonas aeruginosa PA7 7.192991418 6.950527143 6.762703213 7.008975832 7.570872671 7.183314708 7.059586337 253561118 ctsR Stress Protein stress Clostridium botulinum D str. 1873 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium botulinum; 7.006375288 7.579147717 222113553 pstB Stress Phosphate limitation Streptococcus uberis 0140J 7.001343409 7.016364005 118021600 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 6.979336101 7.277790452 7.105510287 7.215032765 258580683 pilin virulence pilin Vibrio mimicus VM603 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 7.099574672 7.008339193 37548732 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.256482005 7.13607878 68343126 sigma_24 Stress Sigma factors Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.200608122 7.607665418 119814235 tfdA Organic Remediation Aromatics Chlorinated aromatics Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.734844432 7.449508505 7.901735879 7.80810257 7.980135509 7.728186877 7.821920736 7.928275896 260061458 amyA Carbon cycling Carbon degradation Starch Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 7.665130771 7.67238287 7.198436103 7.598420455 7.381038837 7.364119691 7.745363671 110283399 nagI Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 7.16858109 7.511517174 7.309920977 8.024660349 7.442017643 7.042181492 7.826847446 225160198 clpC Stress Protein stress Clostridium hylemonae DSM 15053 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 7.084739357 7.391362198 7.220026243 7.822813921 53850117 sox Sulphur Sulphur oxidation Pseudaminobacter salicylatoxidans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Pseudaminobacter; 6.846268652 7.348081183 189345921 pstA Stress Phosphate limitation Chlorobium limicola DSM 245 7.246346595 7.580720077 257485438 AceA Carbon cycling Carbon degradation others Pseudomonas syringae pv. tabaci ATCC 11528 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas amygdali; 7.288424771 7.221913367 41326751 pstB Stress Phosphate limitation Corynebacterium glutamicum ATCC 13032 8.139893816 8.274667544 7.867482474 8.220723287 8.228770128 8.441124015 8.536473242 8.514114568 271961690 sigma_24 Stress Sigma factors Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 7.91127716 7.835418291 7.838034288 8.506317933 8.281647031 8.316204608 7.844177467 223938404 B_lactamase_C Antibiotic resistance Beta-lactamases bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 7.246913949 7.330089994 13249545 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.327753095 7.420396218 7.373542573 7.257085887 7.52992366 7.204347244 7.086493314 7.459860315 58425839 obgE Stress Radiation stress Xanthomonas oryzae pv. oryzae KACC10331 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 7.71821306 7.917270138 8.046676062 7.123360196 7.559654897 7.538848467 8.102491875 67901636 BADH Organic Remediation Aromatics Other aromatics Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.459592282 7.327638756 7.263047329 7.551581867 7.69681611 7.408889285 7.556689848 146398161 sigma_70 Stress Sigma factors Geobacter uraniireducens Rf4 7.241320285 7.644306919 40253076 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.276098035 7.178675791 7.197378142 7.422828096 158138856 narG Nitrogen Denitrification uncultured bacterium 7.121277 6.954623301 56809419 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 6.960828663 6.921243347 197286014 Arylest Organic Remediation Aromatics Other aromatics Proteus mirabilis HI4320 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 7.262267132 6.941358371 253584823 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.226893053 7.307418953 6.760801225 7.098103732 7.573230905 7.173854544 7.219510597 118728128 TerC Metal Resistance Tellurium Clostridium cellulolyticum H10 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium cellulolyticum; 7.028557083 7.42617945 270276278 hly virulence hemolysin Bifidobacterium gallicum DSM 20093 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 6.974017598 7.211094756 6.647250658 7.770160235 63257048 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 6.939724699 7.428983071 6.899762751 7.112703194 7.542754842 7.340045088 7.301262661 77960616 ZitB Metal Resistance Zinc Yersinia mollaretii ATCC 43969 6.988040468 7.232895866 6.971739248 7.737024775 223887036 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.248129219 7.346577598 6.9796264 6.818492519 7.56515442 6.986715784 7.613260859 46519935 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.732891652 7.7561978 7.476877439 7.588828512 7.683389155 7.915543274 18034251 APS_AprA Sulphur adenylylsulfate reductase Thermodesulforhabdus norvegica superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Thermodesulforhabdus; 7.592710341 7.486611212 7.093358954 6.454193113 7.315677627 7.286119655 7.227042008 70607640 glycosyl_transferase_EPS Bioleaching EPS Sulfolobus acidocaldarius DSM 639 6.810888208 7.109386069 77995101 glnA Stress Nitrogen limitation Carboxydothermus hydrogenoformans Z-2901 7.049796008 7.160868049 146274010 CODH Carbon cycling Carbon fixation Pelotomaculum thermopropionicum SI superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Pelotomaculum;species:Pelotomaculum thermopropionicum; 7.151545182 6.943250988 29840266 gyrB other category gyrB Chlamydophila caviae GPIC superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Chlamydiaceae;genus:Chlamydophila;species:Chlamydophila caviae; 7.062934702 7.234187249 124005304 alkK Organic Remediation Others Microscilla marina ATCC 23134 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Microscilla;species:Microscilla marina; 7.816132316 7.792547006 7.822285182 8.087878966 8.144870854 262376070 pstB Stress Phosphate limitation Acinetobacter lwoffii SH145 7.165226429 7.178023871 6.875884509 6.783857905 7.418252461 116249726 cydA Stress Oxygen limitation Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 6.964896668 7.370127952 7.279035608 7.3326156 7.909082898 7.261942079 7.508090659 7.629975945 212639236 glnA Stress Nitrogen limitation Anoxybacillus flavithermus WK1 7.332988686 6.969354148 49530583 xylC Organic Remediation Aromatics BTEX and related aromatics Acinetobacter sp. ADP1 7.33975704 7.552794992 7.441975762 7.281796718 7.908874524 283440257 sigma_24 Stress Sigma factors Pirellula staleyi DSM 6068 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Pirellula;species:Pirellula staleyi; 7.884057688 7.62993318 7.936379715 8.077172547 8.219269068 8.265300133 8.306272354 260542453 Tet Antibiotic resistance other Blautia hansenii DSM 20583 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Blautia;species:Blautia hansenii; 7.230917864 7.230728797 66048041 glnA Stress Nitrogen limitation Pseudomonas syringae pv. syringae B728a 7.463827455 7.336282858 7.463428811 7.449287282 7.369419004 7.739449875 7.687660842 226329897 SMR_antibiotics Antibiotic resistance transporter Proteus penneri ATCC 35198 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus penneri; 7.595666822 7.204989857 157368347 xylA Carbon cycling Carbon degradation Hemicellulose Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 7.258254635 7.165326965 7.118268171 7.608078394 167768791 ChrA Metal Resistance Chromium Anaerotruncus colihominis DSM 17241 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Anaerotruncus;species:Anaerotruncus colihominis; 7.361868069 7.322522735 7.164531749 7.490298982 7.335425742 7.360517938 124514796 ABC_transporter_II Bioleaching other category Leptospirillum sp. Group II UBA 7.584442252 7.363081785 7.410296214 7.464572406 7.371718369 7.636385171 71147598 ahpF Stress Oxygen stress Colwellia psychrerythraea 34H superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Colwelliaceae;genus:Colwellia;species:Colwellia psychrerythraea; 7.151790286 7.45774705 7.542102551 7.026574568 7.447706753 7.312830232 7.000034079 7.277968644 219674559 pcpE Organic Remediation Herbicides related compound gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.479636401 7.390013627 7.617507894 7.856417636 7.96956969 7.903328022 7.848766528 81429203 srt virulence surface protein Lactobacillus sakei subsp. sakei 23K superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus sakei; 7.084520759 7.129237815 62512312 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.066977402 8.196639284 8.193251907 8.478030301 8.358121528 8.215821365 8.169381685 164419629 amoA Nitrogen Nitrification superkingdom:Bacteria; 6.705462061 6.843133837 156740438 sigma_70 Stress Sigma factors Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 7.081546764 7.660083625 212544248 nagG Organic Remediation Aromatics Aromatic carboxylic acid Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.137974123 6.995333907 6.820579014 7.031957028 4324382 arsB Metal Resistance Arsenic Yersinia enterocolitica superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia; 6.905821358 7.166044476 237501074 phoB Stress Phosphate limitation Tolumonas auensis DSM 9187 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Tolumonas;species:Tolumonas auensis; 6.842468237 6.967188153 7.605382541 7.208686425 7.361939002 3985988 gyrB other category gyrB Nitrosomonas sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 7.369747074 7.156650461 7.382722189 7.220968763 7.105559212 7.277039659 85823771 glnA Stress Nitrogen limitation Roseobacter sp. MED193 7.59919859 7.403780614 7.195778744 7.123607266 1785560 dsrB Sulphur sulfite reductase Desulfovibrio gigas superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 7.985950221 7.901953933 7.708636941 7.613846121 7.60402603 118171874 caaD Organic Remediation Others Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 7.159632876 7.424850676 114544319 atzB Organic Remediation Herbicides related compound Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.629262421 7.701014527 7.37641212 7.730099006 7.704574328 8.093544455 7.672474532 187718344 type_III_secretion virulence secretion Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.812534331 7.811669213 7.623012889 7.475172602 7.959787633 7.494802176 7.362857024 7.740063113 69153892 rubisco Carbon cycling Carbon fixation Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 7.972935451 8.138708607 8.173263875 8.361062245 8.435433183 8.270864135 8.38299256 242813648 MFS_antibiotic Antibiotic resistance transporter Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 7.158904261 7.567052944 51855008 sigma_24 Stress Sigma factors Symbiobacterium thermophilum IAM 14863 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVIII. Incertae Sedis;genus:Symbiobacterium;species:Symbiobacterium thermophilum; 7.262511366 7.52642935 6.964843494 7.404637243 7.317602324 7.385365348 7.244515231 227219287 clpC Stress Protein stress Atopobium vaginae DSM 15829 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Atopobium;species:Atopobium vaginae; 6.934525868 7.25661793 7.179871828 7.057586477 7.775924602 229542528 cda Carbon cycling Carbon degradation Starch Bacillus coagulans 36D1 7.274707254 7.58839036 7.145153287 7.583188321 7.660057515 7.497468096 7.189048167 78045024 FTHFS Carbon cycling Acetogenesis Carboxydothermus hydrogenoformans Z-2901 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Carboxydothermus;species:Carboxydothermus hydrogenoformans; 6.952917928 7.288560347 6.951817362 6.825236357 6.979749077 242227752 xylA Carbon cycling Carbon degradation Hemicellulose Clostridium cellulovorans 743B superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium cellulovorans; 6.913631699 7.010393101 262338748 phoB Stress Phosphate limitation Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 6.990721151 6.978248891 134136489 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 7.551162561 7.93132158 7.711017956 7.578376689 7.562256573 8.136696696 8.007984063 7.822360948 21911138 fnr Stress Oxygen stress Streptococcus pyogenes MGAS315 7.199148198 7.175856446 119944695 CopA Metal Resistance Copper Psychromonas ingrahamii 37 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas;species:Psychromonas ingrahamii; 7.048933344 7.552658688 7.223652931 7.438157228 7.495925459 260606209 iuc virulence aerobactin Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 7.108918144 7.112333854 256849101 pstB Stress Phosphate limitation Lactobacillus crispatus MV-1A-US 6.943688395 7.331160834 158447435 ChrA Metal Resistance Chromium Peptostreptococcus micros ATCC 33270 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;species:Parvimonas micra; 7.460711103 7.194297099 7.023946319 7.716958738 6.834306128 7.523635215 242241182 oxyR Stress Oxygen stress Dickeya dadantii Ech703 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 6.98586996 7.304496266 7.16011003 7.453460854 90954561 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6.743657718 7.174897078 149378268 obgE Stress Radiation stress Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 7.721813128 7.248706616 6.928706709 7.50786167 7.329318147 170101418 phenol_oxidase Carbon cycling Carbon degradation Lignin Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 7.665071745 7.443743335 133948854 pcaG Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 7.383335332 7.18795778 6.92635157 7.687426332 7.164374215 7.256333538 227840046 pstA Stress Phosphate limitation Oribacterium sinus F0268 6.998656726 7.08946415 48527126 mcrA Carbon cycling Methane Methane production uncultured Methanomicrobiales archaeon superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales; 7.528018835 7.818382057 7.799607565 7.48965531 7.905544332 7.72458216 7.901319657 7.536402359 154250106 pstA Stress Phosphate limitation Fervidobacterium nodosum Rt17-B1 7.023675191 7.150430241 237637180 nirS Nitrogen Denitrification uncultured bacterium 7.394510529 7.296047626 6.891482586 7.146101958 3892198 dsrA Sulphur sulfite reductase Archaeoglobus profundus 6.931350135 7.192860197 6.912974625 7.30413842 168333981 TerD Metal Resistance Tellurium Epulopiscium sp. 'N.t. morphotype B' superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Epulopiscium; 7.664100763 7.04514537 6.665938412 7.131985654 6.968276176 7.408992758 33391479 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.046316196 7.566149466 7.878811167 7.583775339 7.755484633 7.58463047 118044404 phtA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 6.942024572 6.773609337 283819275 sigma_24 Stress Sigma factors Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 7.466822488 7.403818217 7.322997102 7.412937875 7.5349292 7.41744054 62484852 bco Organic Remediation Aromatics Aromatic carboxylic acid uncultured bacterium superkingdom:Bacteria; 7.604198532 7.271642747 7.086977098 7.568209867 42527250 ChrA Metal Resistance Chromium Treponema denticola ATCC 35405 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema denticola; 6.692854272 6.897799791 147886116 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 6.923627925 7.260944651 6.985584153 7.580518677 88702185 pstB Stress Phosphate limitation Congregibacter litoralis KT71 7.609280024 7.902769938 7.229340387 7.008049383 7.746674075 6.953856028 7.055841709 126621051 pstC Stress Phosphate limitation Cyanothece sp. CCY0110 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 6.902860536 6.934771912 254291781 pilin virulence pilin Vibrio cholerae AM-19226 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 7.225640202 7.073587267 7.021414238 7.342614056 161786371 ppk Phosphorus Phosphorus utilization Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 7.133208317 6.947639023 228271513 perR Stress Oxygen stress Staphylococcus hominis SK119 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus hominis; 6.742432642 7.349304005 34499137 sigma_38 Stress Sigma factors Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 6.981465994 7.275172281 169762844 pheA Organic Remediation Aromatics Other aromatics Aspergillus oryzae RIB40 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus oryzae; 7.254625295 7.358620876 7.178593403 7.341418165 83362786 nifH Nitrogen Nitrogen fixation Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 7.493587126 7.44405221 7.322275418 6.879697663 154484644 ChrA Metal Resistance Chromium Eubacterium ventriosum ATCC 27560 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium ventriosum; 7.31993364 7.13424264 6.579662527 7.318051 7.191440085 7.026614515 7.279894613 187476824 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 8.312391551 8.201425726 7.857900977 7.903337639 8.125089054 7.800674697 8.232851004 7.660567813 194014571 glnR Stress Nitrogen limitation Bacillus pumilus ATCC 7061 7.387441225 7.462279008 6.581791644 7.223560718 7.390702463 7.143805617 7.192803572 7.12902336 118696055 silC Metal Resistance Silver Burkholderia ambifaria MC40-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 7.672310188 7.814825962 7.876088739 7.993380802 7.773997834 7.871964906 7.788825817 145274673 nrfA Nitrogen Dissimilatory N reduction Haemophilus influenzae 22.4-21 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus influenzae; 7.814049644 7.811235515 7.921879372 8.339570628 7.578193097 7.696418199 8.058624788 112818177 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Hypocrea virens superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 7.18633018 7.299013888 7.548784526 7.160661101 7.183956736 7.151316843 7.471658624 56798497 catechol_B Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 7.12335144 7.474649723 7.798133228 7.534221569 7.152117073 7.332108277 7.137533152 119669863 AceB Carbon cycling Carbon degradation others Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 7.651743597 7.468606307 7.334773765 7.260828106 7.396610962 7.64664252 229591964 cytochrome Energy process Energy process Pseudomonas fluorescens SBW25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.130466585 7.179896341 6.981619546 7.186988249 7.04359437 7.02880538 68263100 pimF Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium jeikeium K411 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 7.194215966 7.088656321 7.116161203 7.643400492 163839359 glnA Stress Nitrogen limitation Renibacterium salmoninarum ATCC 33209 7.245179731 7.292184323 134084174 phytase Phosphorus Phosphorus utilization Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 7.037195262 7.324545 6.976122522 6.998317983 170516854 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 8.264332172 8.017863976 7.374579275 8.001245441 7.648986947 8.319344772 7.843687818 223585943 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.43369004 7.467579042 7.433832478 7.246913072 7.459077554 7.654861943 158319868 ChrA Metal Resistance Chromium Alkaliphilus oremlandii OhILAs superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus oremlandii; 7.285458342 7.593620199 126705680 grpE Stress Heat shock Rhodobacterales bacterium HTCC2150 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.221489889 6.802680334 6.798768709 7.580149282 7.350039765 6.991541676 7.420582481 55978094 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.453469059 7.731749801 7.599719874 7.421705975 7.540545071 7.525662265 7.548036658 121582739 bphA Organic Remediation Aromatics Polycyclic aromatics Polaromonas naphthalenivorans CJ2 7.117061702 6.933375804 46912325 grpE Stress Heat shock Photobacterium profundum SS9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 6.797619782 6.773153213 6.899744563 7.516840789 4545090 nosZ Nitrogen Denitrification Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.69105691 7.935379848 8.066574282 7.984181525 8.044261624 7.593385283 7.878304068 84668305 phtA Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.796212895 7.672011153 7.506543325 7.704013499 7.3436498 7.64696134 72122389 ChrA Metal Resistance Chromium Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.38711627 7.363939357 7.210631169 6.977828077 7.674688913 6.986674656 7.404529514 114541523 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.441031996 7.324851799 15603654 sigma_24 Stress Sigma factors Pasteurella multocida subsp. multocida str. Pm70 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Pasteurella;species:Pasteurella multocida; 7.240628778 7.243730511 84625106 oxyR Stress Oxygen stress Xanthomonas oryzae pv. oryzae MAFF 311018 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 6.88510532 7.273738517 7.202777191 7.536240619 126637021 ahpC Stress Oxygen stress Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 6.996406777 7.174384431 119505454 oxyR Stress Oxygen stress marine gamma proteobacterium HTCC2080 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.103192607 7.432134258 7.614349804 6.985725099 126354181 dsrA Sulphur sulfite reductase Caldivirga maquilingensis IC-167 7.410905297 7.49927668 7.521056526 7.499944954 99039150 pimF Organic Remediation Aromatics Aromatic carboxylic acid Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.010721401 7.247111907 7.008568588 6.87121473 7.201230594 157918223 obgE Stress Radiation stress Salinispora arenicola CNS-205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 7.023479913 7.530290042 32967107 pheA Organic Remediation Aromatics Other aromatics Pseudomonas sp. KL28 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.980755811 7.983783695 7.844790104 7.977626829 7.925323945 8.090010481 8.264446668 7.964964891 37676815 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Vibrio vulnificus YJ016 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 7.11885517 7.128306693 7.020069881 7.385196517 7.238955061 7.095709552 16754883 ara_fungi Carbon cycling Carbon degradation Hemicellulose Aspergillus oryzae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 8.236019642 7.938685096 7.818996418 8.571988723 8.410836105 7.891491502 8.555404114 242794926 MFS_antibiotic Antibiotic resistance transporter Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 7.591100279 7.83704049 7.368952245 7.50248121 7.736689871 7.826863634 7.662173217 124599232 nbzB Organic Remediation Aromatics Nitoaromatics Mycobacterium tuberculosis C 7.184085305 7.586156778 7.752196837 7.68559851 7.811388772 7.688477634 150399176 pstB Stress Phosphate limitation Methanococcus vannielii SB 7.301342736 7.20006237 86555546 obgE Stress Radiation stress Synechococcus sp. JA-3-3Ab superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.355521048 7.276225501 6.957618504 7.073813702 7.713370319 149812610 phn Organic Remediation Herbicides related compound Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 6.93218036 7.621325745 7.349617185 7.174665522 7.354515794 221230418 SMR_antibiotics Antibiotic resistance transporter Mycobacterium leprae Br4923 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium leprae; 7.905055918 7.633237303 7.292902997 7.572003722 218168883 ppx Phosphorus Phosphorus utilization Cyanothece sp. PCC 8801 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.214715463 7.121180881 7.328026021 7.441699221 7.432945768 7.19128717 1911243 narG Nitrogen Denitrification Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.127554186 7.069844796 6.955192791 7.26353942 7.468660951 7.371549285 7.177722068 7.442976297 210069206 vdh Carbon cycling Carbon degradation Others Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.266199273 7.042756502 67155741 MFS_antibiotic Antibiotic resistance transporter Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter; 6.9386634 7.181868427 6.935877975 6.712148651 7.662660817 59892800 nifH Nitrogen Nitrogen fixation uncultured forest soil bacterium superkingdom:Bacteria; 7.001767575 7.11952329 6.699292826 7.631775744 152025198 rubisco Carbon cycling Carbon fixation Bacillus cereus subsp. cytotoxis NVH 391-98 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cytotoxicus; 7.405119421 7.332442493 110800040 pulA Carbon cycling Carbon degradation Starch Clostridium perfringens ATCC 13124 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium perfringens; 7.048356593 7.249628334 7.458246543 7.66506326 22135354 gyrB other category gyrB Proteus mirabilis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus; 7.56990747 7.483612368 7.280349268 6.927469445 125717181 glnA Stress Nitrogen limitation Streptococcus sanguinis SK36 7.32504165 6.964586301 7.21225756 7.612451538 7.314812087 7.256118276 7.34346269 258595734 pilin virulence pilin Desulfurivibrio alkaliphilus AHT2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfurivibrio;species:Desulfurivibrio alkaliphilus; 7.415878809 7.764972443 7.490567197 6.991922483 8.104705445 74038380 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.447568993 7.775329146 7.632581924 7.607029514 7.250573777 7.651556981 7.330964115 46134159 phenol_oxidase Carbon cycling Carbon degradation Lignin Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 7.084785759 6.819443657 162955658 alkK Organic Remediation Others Renibacterium salmoninarum ATCC 33209 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Renibacterium;species:Renibacterium salmoninarum; 7.239043648 7.152874026 196178733 grpE Stress Heat shock Microcoleus chthonoplastes PCC 7420 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus chthonoplastes; 7.519165374 7.253151267 22087119 gyrB other category gyrB Pseudomonas agarolyticus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.614349669 7.671697297 7.944857153 7.262809976 8.186149006 7.429608925 7.549962317 7.902668849 118168680 nmoA Organic Remediation Aromatics Nitoaromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 7.559299857 7.5340528 7.358834015 7.880703374 7.733767909 7.487242291 7.486172062 152980273 katE Stress Oxygen stress Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 7.415062121 7.630611173 7.387143622 7.122800751 7.719926389 7.360314524 8.038402108 7.677948784 46409955 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.011662697 7.608135029 7.106370312 6.813189246 7.313644866 115492175 tftH Organic Remediation Aromatics Chlorinated aromatics Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 8.005912993 7.671801344 7.471211092 7.834610477 7.832388636 7.693972943 8.072129753 182415890 CopA Metal Resistance Copper Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 7.163629139 7.266984818 169884442 clpC Stress Protein stress Synechococcus sp. PCC 7002 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 6.900644596 7.125497242 6.460446545 7.328096778 24373292 pstB Stress Phosphate limitation Shewanella oneidensis MR-1 7.252854224 7.487077323 7.126236655 6.572588442 7.570153191 34101792 pilin virulence pilin Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 7.682435388 7.332284707 7.382772742 7.071672475 7.273463555 7.630592107 252120514 sigma_70 Stress Sigma factors Prevotella melaninogenica ATCC 25845 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella melaninogenica; 7.067103324 7.430750191 7.269156278 7.240657537 7.594938645 7.57687642 219674463 hmgC Organic Remediation Aromatics Aromatic carboxylic acid gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 6.892421155 6.848080403 147849376 sigma_70 Stress Sigma factors Synechococcus sp. WH 7803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.558235053 7.553997997 7.707001777 7.586214084 146311959 narJ Stress Oxygen limitation Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 7.28469495 7.487452606 7.30502842 6.840711851 7.56196046 7.078457521 6.932962606 7.650484117 172056050 gyrB other category gyrB Exiguobacterium sibiricum 255-15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 7.285547758 7.199571325 6.815263816 7.351822981 220708114 bphF1 Organic Remediation Aromatics Polycyclic aromatics Geobacillus sp. Y412MC61 7.184317125 7.54456202 212682073 amyA Carbon cycling Carbon degradation Starch Anaerocellum thermophilum DSM 6725 6.877225474 7.10481225 256679341 katE Stress Oxygen stress Streptomyces sp. SPB78 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7.78252748 7.972137113 7.733732781 7.786673456 1698444 endochitinase Carbon cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.415565732 7.83751142 7.500336277 7.979435313 7.836760231 7.903488352 8.315696508 206679616 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.17559328 7.293726799 148252858 SilA Metal Resistance Silver Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.699788961 7.604265276 7.190556219 7.540457665 7.641008532 7.409379027 7.587363473 253701759 cytochrome Energy process Energy process Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 7.458818876 7.493350238 7.416326075 7.133022761 7.302759734 7.692050005 7.515691096 219674098 exaA Organic Remediation Chlorinated solvents gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.085900984 6.912138245 6.94269601 7.360601967 7.360802319 7.106581962 7.263590435 62636239 helicase_family_4_DnaB_like Bacteria phage REPLICATION Bacteriophage EW order:Caudovirales;family:Siphoviridae; 7.437212063 7.334046853 6.906756827 6.956072468 7.236497344 7.394325133 157962206 hly virulence hemolysin Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 7.182846379 7.259691372 7.346582241 6.665940058 7.4444625 7.053593953 7.607191606 83943347 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 6.641791879 7.489346306 160356549 ppx Phosphorus Phosphorus utilization Bacillus selenitireducens MLS10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus selenitireducens; 7.389238254 7.355206256 7.877072559 7.599147163 7.7066936 146294507 pilin virulence pilin Shewanella putrefaciens CN-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella putrefaciens; 6.976877114 7.073937861 149812262 ureC Nitrogen Ammonification Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.210144549 7.186534834 255063554 glnA Stress Nitrogen limitation Nitrosomonas sp. AL212 7.529250188 7.43920731 221563210 CopA Metal Resistance Copper Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 6.779305895 7.498754447 238595984 phenol_oxidase Carbon cycling Carbon degradation Lignin Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 6.846242244 7.375960699 7.512782673 7.532321787 7.975723856 88811347 katE Stress Oxygen stress Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 7.055992915 7.195711274 7.413845037 7.584711725 83853703 ZntA Metal Resistance Zinc Oceanicaulis alexandrii HTCC2633 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis;species:Oceanicaulis alexandrii; 8.140127061 8.184097629 7.727400937 7.916516853 7.777059509 8.136007205 7.629492492 111116443 bphF1 Organic Remediation Aromatics Polycyclic aromatics Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.617210317 7.556090308 7.232177888 7.458451016 118424350 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.024892569 7.284692843 167584637 B_lactamase_C Antibiotic resistance Beta-lactamases Burkholderia ubonensis Bu superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ubonensis; 6.954817976 7.006765016 187478340 nmoA Organic Remediation Aromatics Nitoaromatics Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 6.911143925 7.372445084 7.342107631 7.156197559 7.087951569 187714898 fnr Stress Oxygen stress Burkholderia phytofirmans PsJN 7.334274651 7.458088781 6.804167397 7.232072776 7.095321126 7.212058033 7.26567734 227112645 MFS_antibiotic Antibiotic resistance transporter Pectobacterium carotovorum subsp. brasiliensis PBR1692 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 7.912204866 7.970111821 8.275190109 7.437690723 7.544977364 7.702874635 8.080271853 126618877 obgE Stress Radiation stress Cyanothece sp. CCY0110 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 6.975683153 7.039374716 7.000716085 6.565183615 7.349251935 6.774283824 6.996466581 6.887772308 256422761 B_lactamase_C Antibiotic resistance Beta-lactamases Chitinophaga pinensis DSM 2588 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 6.826952395 6.880493326 88699410 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Congregibacter litoralis KT71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 7.172664285 7.023912665 6.747194398 7.273029612 6.926038387 7.237427112 189432437 ChrA Metal Resistance Chromium Bacteroides coprocola DSM 17136 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides coprocola; 6.563346293 6.853646489 167780779 oxyR Stress Oxygen stress Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira biflexa; 6.565292056 7.416128517 62288822 holin_type_3 Bacteria phage LYSIS Enterobacteria phage RB43 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 6.822668522 7.492728765 6.680121727 6.701370831 149201474 glnA Stress Nitrogen limitation Roseovarius sp. TM1035 7.5473842 7.464015963 6.969014306 7.729785733 90324344 ureC Nitrogen Ammonification Photobacterium profundum 3TCK superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 6.789237573 7.131373055 6.871147133 7.414560211 211637892 type_III_secretion virulence secretion Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus asymbiotica; 6.87507102 6.942482224 220717070 ureC Nitrogen Ammonification Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 7.69043935 7.597882471 154251269 chnB Organic Remediation Other Hydrocarbons Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 7.743394138 7.29786715 169619515 nagG Organic Remediation Aromatics Aromatic carboxylic acid Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 8.240835596 7.938274087 7.755692202 8.001839954 7.768370479 8.081840772 7.885536329 91783796 atzA Organic Remediation Herbicides related compound Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.755622568 7.558722773 7.782861819 7.934953002 145251437 pheA Organic Remediation Aromatics Other aromatics Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.211671062 6.997415909 6.530808274 6.853553121 7.441282746 6.930965917 6.872646386 7.402213438 260773408 pstA Stress Phosphate limitation Vibrio metschnikovii CIP 69.14 7.393012836 7.116001167 197285599 katA Stress Oxygen stress Proteus mirabilis HI4320 6.716696951 7.011771902 193498775 amoA Nitrogen Nitrification superkingdom:Archaea; 7.474635166 7.474299302 7.381176102 7.367841971 7.292941622 146303352 4Fe_4S_ferredoxin Bioleaching Electron transport Metallosphaera sedula DSM 5348 7.011617541 6.954225783 7.399062646 146406978 mer Metal Resistance Mercury Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.446451695 7.43935318 7.379166426 7.74080798 7.958360107 7.639930135 7.486194614 183597006 pstS Stress Phosphate limitation Providencia stuartii ATCC 25827 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia stuartii; 6.959476607 7.040627788 194597013 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 7.372547518 7.437605318 7.272924194 7.567203357 7.68412365 7.541165035 7.371340503 7.552471901 iegAssA5 AssA Carbon cycling Carbon degradation Others 7.124430298 7.305468906 7.140241073 7.638840189 7.169874728 7.029928557 7.306209066 29377013 srt virulence surface protein Enterococcus faecalis V583 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus faecalis; 7.18913315 7.405936998 78356072 grpE Stress Heat shock Desulfovibrio desulfuricans subsp. desulfuricans str. G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 7.119513749 7.616055917 7.178211011 7.236406319 7.788961954 7.515102654 7.758106231 7.498772237 117608585 fnr Stress Oxygen stress Magnetococcus sp. MC-1 7.264178313 7.436082387 7.508243254 7.550190391 92112458 proO Organic Remediation Aromatics Other aromatics Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 7.369584656 7.503104763 7.050720009 7.111045428 7.185022791 6.92479217 7.539651858 167463106 atzA Organic Remediation Herbicides related compound Paenibacillus larvae subsp. larvae BRL-230010 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus larvae; 7.662438692 7.614187416 7.26327518 7.538606089 7.670766503 7.542574259 7.624296948 148838537 pstC Stress Phosphate limitation Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 6.743612177 7.650485936 148474800 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.347615533 7.301764834 7.394114219 7.21800328 281305866 sigma_70 Stress Sigma factors Prevotella timonensis CRIS 5C-B1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella timonensis; 6.859534126 7.090865189 6.981876243 7.601078324 124268542 pimF Organic Remediation Aromatics Aromatic carboxylic acid Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 7.935574217 7.759946648 32895236 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.257369684 7.437411211 7.674982635 7.272604677 7.910991342 7.174310935 7.610909243 7.743474897 223470359 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.411933927 7.889130271 7.487001829 7.640544156 7.547723173 156231934 pstC Stress Phosphate limitation Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 7.583812242 7.844030966 7.430047184 7.495337145 7.67600205 78355542 ZntA Metal Resistance Zinc Desulfovibrio desulfuricans G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 6.827793391 7.090603518 6.64119167 7.592999028 216215 isopullulanase Carbon cycling Carbon degradation Starch Arthrobacter sp. superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.640839559 7.861003689 7.633255362 7.409001458 7.894252417 7.711901936 8.195553078 260587124 pstC Stress Phosphate limitation Blautia hansenii DSM 20583 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Blautia;species:Blautia hansenii; 7.093428692 7.075105487 169885750 cap virulence capsule Synechococcus sp. PCC 7002 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 6.80832972 6.914234601 228648380 pstB Stress Phosphate limitation Bacillus cereus BDRD-ST196 7.14319262 7.14546826 149189628 Arylest Organic Remediation Aromatics Other aromatics Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 7.239926805 6.813875079 6.791405632 7.087304998 188532659 B_lactamase_C Antibiotic resistance Beta-lactamases Erwinia tasmaniensis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia; 7.049623308 7.282135175 6.787451379 6.906954004 7.664569768 7.140760886 7.328281126 119768459 obgE Stress Radiation stress Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 7.531442137 7.897651513 7.276259507 7.531436321 7.632888074 7.466103112 7.338109861 73294119 aclB Carbon cycling Carbon fixation Hydrogenimonas thermophila superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;genus:Hydrogenimonas; 7.112593805 6.880824727 212711010 CadA Metal Resistance Cadmium Providencia alcalifaciens DSM 30120 7.502011293 7.122404197 6.975359069 7.04529736 7.468760229 7.227485348 7.268341929 7.405855204 16125671 ara Carbon cycling Carbon degradation Hemicellulose Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 7.352951786 7.720303293 7.343841702 6.971368364 7.040291778 7.091477852 7.055282691 163803187 ppx Phosphorus Phosphorus utilization Vibrio campbellii AND4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.238129487 7.102078912 37527636 type_III_secretion virulence secretion Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 7.110906008 7.358393131 7.164417568 7.630271062 122042301 glnA Stress Nitrogen limitation Mesorhizobium sp. R88B 7.159043997 7.173597633 109702473 PobA Organic Remediation Aromatics Aromatic carboxylic acid Pseudoalteromonas atlantica T6c 7.22890356 7.146079095 7.67841626 119816045 nbzC Organic Remediation Aromatics Nitoaromatics Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.51782146 7.509474642 7.317904606 7.65097877 7.653089066 7.634892451 7.665941559 170937774 pimF Organic Remediation Aromatics Aromatic carboxylic acid Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 7.468317887 7.708696585 7.940502609 7.635542896 7.38144245 262309164 pstB Stress Phosphate limitation Acinetobacter lwoffii SH145 7.228794955 7.083801883 213951590 glnA Stress Nitrogen limitation Corynebacterium amycolatum SK46 7.770193909 7.701377632 153869234 narH Stress Oxygen limitation Beggiatoa sp. PS superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Beggiatoa; 7.533763249 7.534415013 7.456248409 7.551391142 7.602454536 7.566904359 7.647041029 228563347 pstB Stress Phosphate limitation Dethiosulfovibrio peptidovorans DSM 11002 7.20142984 7.119248154 7.234242805 7.179029293 7.525181507 160917412 narG Nitrogen Denitrification uncultured bacterium 7.272709347 7.23167852 145300527 pilin virulence pilin Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 6.956057961 7.030400352 161075849 hao Nitrogen Nitrification Verrucomicrobiae bacterium V4 superkingdom:Bacteria;phylum:Verrucomicrobia;order:Methylacidiphilales;family:Methylacidiphilaceae;genus:Methylacidiphilum;species:Methylacidiphilum infernorum; 7.724961826 7.424600499 7.059929787 7.263415084 7.291312892 7.320864956 7.569794857 84695735 nagI Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 7.322144428 7.333075379 7.571905011 7.027519807 7.440432812 7.80796975 145702992 nagI Organic Remediation Aromatics Aromatic carboxylic acid Metallosphaera sedula DSM 5348 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Metallosphaera;species:Metallosphaera sedula; 7.060499267 7.007688268 124898407 ara Carbon cycling Carbon degradation Hemicellulose Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 7.134549124 7.262940054 7.134237803 7.085348098 238917287 hrcA Stress Heat shock Eubacterium eligens ATCC 27750 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium eligens; 7.933479197 7.690090029 7.679392256 8.395888219 8.166981549 8.076571792 7.945681416 158307859 gyrB other category gyrB Acaryochloris marina MBIC11017 7.265839799 7.205172266 126316776 CopA Metal Resistance Copper Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.311516302 7.559284537 7.193286511 7.346353 133739690 pilin virulence pilin Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 7.93603299 7.85517394 8.056739068 8.237073181 7.145892343 8.063032709 37679237 alkK Organic Remediation Others Vibrio vulnificus YJ016 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 7.444990202 7.798652579 7.814301975 8.014204867 7.192713172 7.655009668 7.880935303 46139939 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 7.069182771 7.377328969 6.987420493 6.80518998 7.251444404 7.072720008 7.114372077 255064878 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 7.270552082 7.244455903 256775753 B_lactamase_C Antibiotic resistance Beta-lactamases Streptomyces hygroscopicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces hygroscopicus; 6.794277502 7.780861804 8.242115474 7.047250138 7.31780003 7.691379406 8.117426202 113525909 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 7.682339279 7.79245425 7.43706845 7.775613056 85711761 sigma_70 Stress Sigma factors Idiomarina baltica OS145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina baltica; 6.974459616 7.265527975 148545263 gyrB other category gyrB Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.353637978 7.384205604 7.351822027 7.130760216 168186719 pilin virulence pilin Clostridium botulinum C str. Eklund superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium botulinum; 6.752202356 6.876832375 260220181 glnA Stress Nitrogen limitation Curvibacter putative symbiont of Hydra magnipapillata 7.745157072 7.797868211 8.029143595 7.583229381 7637912 contractile_central_tail_tube_protein Bacteria phage STRUCTURAL Burkholderia phage 42 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.306762196 7.087029078 219932455 gyrB other category gyrB Mycobacterium leprae Br4923 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium leprae; 7.261431804 7.201913069 161085586 gyrB other category gyrB Sporosarcina sp. YM9-109 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Planococcaceae;genus:Sporosarcina; 7.126100628 7.10573598 7.239755048 6.875865073 109625741 atzA Organic Remediation Herbicides related compound Haloquadratum walsbyi DSM 16790 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloquadratum;species:Haloquadratum walsbyi; 7.375760993 7.536238116 7.601567121 7.486598256 7.815083779 7.384198336 8.145738535 91977218 nhh Organic Remediation Aromatics Nitoaromatics Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.223001073 7.363632775 6.999283232 7.352479356 220721284 ArsC Metal Resistance Arsenic Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 7.135761394 7.073625912 118567954 grpE Stress Heat shock Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:Candidatus Ruthia magnifica; 6.969058168 7.360335585 192764480 narG Nitrogen Denitrification uncultured bacterium 7.307474053 7.67112712 92393944 glnA Stress Nitrogen limitation Psychrobacter cryohalolentis K5 6.96475959 7.199630899 6.450682216 7.619428016 7.112622714 7.246010598 163867239 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.037465532 7.51728266 6.826654138 7.532614282 7.121772799 6.974581994 7.123042836 67008225 cmuA Organic Remediation Chlorinated solvents Rhodobacteraceae bacterium 198 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 7.529295496 8.050457461 7.552293741 7.88303045 8.005039567 7.716134875 7.461803106 146303135 ABC_transporter_I Bioleaching other category Metallosphaera sedula DSM 5348 7.352432027 7.371890489 269832928 AceA Carbon cycling Carbon degradation others Vibrio harveyi 1DA3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 7.228990892 7.306641322 7.562170928 8.001721506 7.351111052 7.091505629 149174917 clpC Stress Protein stress Planctomyces maris DSM 8797 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces maris; 7.089122041 7.32274629 7.330097949 7.363012298 7.443377162 73542563 iro virulence Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.873737432 8.086944786 89512828 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 6.640703616 7.169402285 261749490 obgE Stress Radiation stress Blattabacterium sp. (Periplaneta americana) str. BPLAN superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Blattabacteriaceae;genus:Blattabacterium;species:Blattabacterium sp. (Periplaneta americana); 7.095215717 6.867970683 188581760 gyrB other category gyrB Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 7.360824634 7.37107917 7.074008015 7.168008159 7.594595696 7.119201198 7.453830413 7.476934659 147676574 APS_AprA Sulphur adenylylsulfate reductase Pelotomaculum thermopropionicum SI superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Pelotomaculum;species:Pelotomaculum thermopropionicum; 6.672564035 7.384196358 112462693 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 6.971081619 6.934795937 119025329 amyA Carbon cycling Carbon degradation Starch Bifidobacterium adolescentis ATCC 15703 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium adolescentis; 7.102386605 7.312268509 6.783229207 7.477196348 7.061080749 6.880635146 7.310253239 91796360 xylanase Carbon cycling Carbon degradation Hemicellulose Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 7.243921516 7.179275898 197314440 iuc virulence aerobactin Vibrio fischeri MJ11 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Vibrio fischeri; 7.109930963 6.955199316 6.868783046 6.937199456 217412694 amyA Carbon cycling Carbon degradation Starch Bifidobacterium gallicum DSM 20093 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 7.375415631 7.317613397 156527146 sigma_24 Stress Sigma factors Vibrio harveyi ATCC BAA-1116 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 7.37924921 7.223393345 7.121828441 7.040525803 209552482 initiator_protein__theta_replication Bacteria phage REPLICATION Pseudomonas phage PAJU2 order:Caudovirales;family:Siphoviridae; 7.195464793 7.183020348 6.657105608 7.37106247 83592776 iro virulence Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 7.208005252 7.750676126 7.778074406 7.372235127 226914172 glnA Stress Nitrogen limitation Clostridium sp. 7_2_43FAA 7.371398946 6.960896463 118164111 CDH Carbon cycling Carbon degradation Cellulose Mycobacterium avium 104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 7.024681454 7.335289012 33320483 dsrA Sulphur sulfite reductase Desulfotomaculum nigrificans superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 7.060751304 7.08760035 167036008 cytochrome Energy process Energy process Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.07355422 7.522280743 7.617143667 7.657202169 7.727389279 7.958292012 167647812 pcaG Organic Remediation Aromatics Other aromatics Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 7.206406566 7.135248047 33591862 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bordetella pertussis Tohama I superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella pertussis; 7.341894 7.745615138 196110860 pilin virulence pilin Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 7.34675545 7.162557971 7.256686027 7.111271061 21108942 pilin virulence pilin Xanthomonas axonopodis pv. citri str. 306 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas axonopodis; 7.290839036 7.169860651 126952486 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.937805299 8.249360279 7.926063391 7.881279545 8.319347921 7.651929291 7.60400616 85078809 katE Stress Oxygen stress Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 7.186001997 7.105108859 7.181355151 7.028185255 7.037616687 7.167742932 77390281 proV Stress Osmotic stress Rhodobacter sphaeroides 2.4.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 7.391900245 7.319943767 37726814 dsrB Sulphur sulfite reductase uncultured prokaryote 8.080121008 7.622312249 7.396289399 7.282072241 18651924 rubisco Carbon cycling Carbon fixation magnetite-containing magnetic vibrio superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 7.040984601 7.037820677 13814404 ferredoxin_oxidoreductase Bioleaching Electron transport Sulfolobus solfataricus P2 7.013427626 7.479480955 159897434 phoB Stress Phosphate limitation Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 7.145631857 7.392955504 37999208 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.650826079 7.363506046 7.149911728 7.572210174 94984832 glucoamylase Carbon cycling Carbon degradation Starch Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 7.50746092 7.839071155 169793460 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.142706259 7.483141155 7.590527669 7.947504772 268611182 Tet Antibiotic resistance other Ruminococcus flavefaciens FD-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus flavefaciens; 6.770684964 7.462215906 255269199 srt virulence surface protein Bryantella formatexigens DSM 14469 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;species:Bryantella formatexigens; 6.850815301 7.191434626 30269553 nasA Nitrogen Assimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.30530572 7.509380118 7.581977875 7.387062327 7.404370541 7.146832781 7.687801369 159184779 ArsC Metal Resistance Arsenic Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.229391586 7.104700014 7.314608565 7.102811335 7.250531417 988254 xylanase Carbon cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga; 7.212673414 7.092798236 57471283 sigma_70 Stress Sigma factors Flavobacterium johnsoniae superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium; 7.007859104 6.980369611 77958699 dmsA Organic Remediation Others Yersinia bercovieri ATCC 43970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 7.816859377 7.723740332 7.942774201 6.982413556 8.104427961 7.401960294 7.521304249 7.937691355 156936149 glnA Stress Nitrogen limitation Enterobacter sakazakii ATCC BAA-894 8.003788802 7.916461638 7.521753098 7.693496358 7.725057718 28899822 hly virulence hemolysin Vibrio parahaemolyticus RIMD 2210633 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.178157595 7.198788132 261367956 sigma_24 Stress Sigma factors Subdoligranulum variabile DSM 15176 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Subdoligranulum;species:Subdoligranulum variabile; 7.248246771 7.24653156 7.814794307 7.229432616 7.478617482 23492313 catB Organic Remediation Aromatics BTEX and related aromatics Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 7.227906935 7.380668263 7.485968351 7.326779838 7.505657599 7.154596082 7.176013311 33385605 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.406044115 7.773986737 66044975 MFS_antibiotic Antibiotic resistance transporter Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 7.441552406 7.472506774 7.330119992 7.566239096 7.773779533 148830171 Arylest Organic Remediation Aromatics Other aromatics Erythrobacter sp. SD-21 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 7.670923625 7.58667053 7.659457854 7.994165158 8.053417016 7.728747961 7.509530237 7.98034211 148653373 sigma_70 Stress Sigma factors Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 7.031131995 7.027129647 238028561 MFS_antibiotic Antibiotic resistance transporter Burkholderia glumae BGR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia glumae; 7.233526105 7.872909464 8.080861724 7.008458003 7.388046627 7.422327595 7.91215735 51710766 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Acinetobacter radioresistens 7.290708398 7.132626499 6.886074781 7.272589862 7.196303163 7.044365304 38198158 catB Organic Remediation Aromatics BTEX and related aromatics Rhodococcus erythropolis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7.212508497 7.178597559 7.430562966 7.339852055 255108247 B_lactamase_C Antibiotic resistance Beta-lactamases Sideroxydans lithotrophicus ES-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Sideroxydans;species:Sideroxydans lithotrophicus; 7.664179517 7.83823857 7.773525398 8.426938787 7.956998139 7.921510758 8.100515938 76874187 pstC Stress Phosphate limitation Pseudoalteromonas haloplanktis TAC125 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas haloplanktis; 6.996746941 6.931839478 254516198 sox Sulphur Sulphur oxidation gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.810642613 7.927657827 8.043638468 7.596400427 8.143280037 7.712613871 7.618224393 8.112733608 77378597 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.530011854 7.40867474 7.451499089 7.809030129 7.845935548 7.710923611 7.431114662 228612786 inv virulence invasion Bacillus cereus AH621 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 7.028378319 7.527799649 257386280 amyA Carbon cycling Carbon degradation Starch Halomicrobium mukohataei DSM 12286 7.33951133 7.522652337 7.086215134 7.292907746 7.280193448 7.339964001 7.577608945 186681077 dnaK Stress Heat shock Nostoc punctiforme PCC 73102 7.651683776 7.268967659 7.681033563 7.813374553 7.822618543 7.574181235 6.794785948 226904646 sigma_70 Stress Sigma factors Acidaminococcus sp. D21 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Acidaminococcus; 7.199442305 7.132738116 6.764354152 7.386425292 7.185228025 7.092852324 117984922 CopA Metal Resistance Copper Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.27982926 7.367749687 7.506012237 7.135300213 7.268768535 7.963712133 229541957 fnr Stress Oxygen stress Bacillus coagulans 36D1 7.110209577 7.073436442 6.585555597 7.434568103 119483746 endoglucanase Carbon cycling Carbon degradation Cellulose Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 7.440100464 7.43265141 7.754027648 7.763538404 7.836223833 8.063279548 8.049173478 197624597 sigma_70 Stress Sigma factors Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 7.517062175 7.027312235 7.520933891 7.123379639 7.495475071 254872650 srt virulence surface protein Listeria monocytogenes FSL N1-017 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria monocytogenes; 6.927311732 7.05798381 51491432 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 6.773833163 7.413627544 118026212 pmoA Carbon cycling Methane Methane oxidation bacteria endosymbiont of Bathymodiolus childressi superkingdom:Bacteria; 7.392289523 7.674111763 7.029582622 7.388100895 7.669807682 7.562271244 7.711986572 7.726894123 241894982 pstB Stress Phosphate limitation Weissella paramesenteroides ATCC 33313 7.01715314 7.164863717 76588684 xylA Carbon cycling Carbon degradation Hemicellulose Thermoanaerobacter ethanolicus ATCC 33223 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Thermoanaerobacter;species:Thermoanaerobacter pseudethanolicus; 7.122567057 7.219338617 7.140155219 7.405360557 227500400 ppk Phosphorus Phosphorus utilization Anaerococcus tetradius ATCC 35098 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Anaerococcus;species:Anaerococcus tetradius; 7.079699309 7.017058805 110612603 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.109832625 7.114847987 83595978 amoA Nitrogen Nitrification superkingdom:Bacteria; 6.837077736 6.890164304 218440968 AceB Carbon cycling Carbon degradation others Cyanothece sp. PCC 7424 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.539608659 7.24918841 239807137 B_lactamase_C Antibiotic resistance Beta-lactamases Geobacillus sp. WCH70 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.781654461 7.697382741 7.759390731 7.560312036 108762696 sigma_32 Stress Sigma factors Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 7.440341757 7.273304961 7.271362232 7.81964371 7.838405802 7.923994641 7.580017061 91226296 hly virulence hemolysin Vibrio alginolyticus 12G01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 7.419495504 7.579380349 7.322448434 7.692146349 7.780304715 7.615009645 7.789580814 7.905250454 157148126 grpE Stress Heat shock Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 7.198678716 7.565223456 7.038441564 7.493026685 7.69689505 8.010227659 7.752495105 8.131218828 89104738 TehB Metal Resistance Tellurium Yersinia pestis biovar Orientalis str. IP275 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia pestis; 7.247960088 7.334126834 7.285543287 7.591439168 146191610 atzB Organic Remediation Herbicides related compound Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.040542402 7.273793742 227987150 fnr Stress Oxygen stress Meiothermus silvanus DSM 9946 7.223845264 6.870871595 7.226965939 7.017144698 7.733109654 149933450 pcc Carbon cycling Carbon fixation Bacteroides vulgatus ATCC 8482 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides vulgatus; 7.689147522 7.930556953 7.929937608 7.536878683 7.908873408 7.496218719 7.44042628 148871079 pilin virulence pilin Vibrio harveyi HY01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 7.719356545 7.745801348 7.719455571 7.420131556 7.925922562 7.530592425 8.02687766 78222047 cytochrome Energy process Energy process Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 7.153833215 7.853181171 198265053 mer Metal Resistance Mercury Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 7.100961365 7.634390121 7.700413756 7.321320737 7.829524791 73749269 glnA Stress Nitrogen limitation Dehalococcoides sp. CBDB1 7.214774274 7.042839944 50084026 ChrA Metal Resistance Chromium Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 6.755725579 7.457871786 261283544 ara Carbon cycling Carbon degradation Hemicellulose Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.903025514 8.327043802 8.05818924 7.853620472 7.974388404 7.69443184 7.44235126 8.162139316 126635904 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.038852552 7.388317969 6.97631799 7.610380862 116804542 nasA Nitrogen Assimilatory N reduction uncultured prokaryote 8.140294233 7.644899351 7.847175507 8.220263057 8.167596912 7.968466912 8.320542805 218779568 proX Stress Osmotic stress Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 7.553834348 7.391347302 7.352150547 7.252033952 119467578 katE Stress Oxygen stress Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 7.066230901 7.539352614 7.012488114 7.665497314 255068573 oxyR Stress Oxygen stress Neisseria sicca ATCC 29256 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria sicca; 7.337306463 7.288710912 156742838 sigma_70 Stress Sigma factors Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 7.723447493 7.531936175 7.570635227 7.320899127 7.219640105 7.458677929 124294985 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.021178628 7.30712859 6.802493262 7.736887099 126576203 nitA Organic Remediation Aromatics Other aromatics Algoriphagus sp. PR1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cyclobacteriaceae;genus:Algoriphagus; 7.658954527 7.984544836 7.604432866 7.668674835 7.786896119 7.974745339 7.897101536 110335509 pcc Carbon cycling Carbon fixation Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 7.11476676 6.93427226 14276809 dsrB Sulphur sulfite reductase Desulfotomaculum putei superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 7.492366391 7.375857888 7.390843932 7.109635512 7.270775022 8.015450487 46850236 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.493345158 7.584311485 212639339 glnR Stress Nitrogen limitation Anoxybacillus flavithermus WK1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Anoxybacillus;species:Anoxybacillus flavithermus; 7.050930679 6.898029864 6.646462533 7.376494783 6.940636256 7.242970101 119673071 glnA Stress Nitrogen limitation Pyrobaculum islandicum DSM 4184 7.078211318 7.243153593 16264557 mer Metal Resistance Mercury Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 6.951439346 6.988757887 256038144 fnr Stress Oxygen stress Chitinophaga pinensis DSM 2588 6.962809011 7.141419932 56476762 Apc Organic Remediation Aromatics BTEX and related aromatics Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 7.200361176 7.479235114 7.242918473 7.415213616 7.334383974 7.522242493 256827331 sigma_70 Stress Sigma factors Cryptobacterium curtum DSM 15641 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Cryptobacterium;species:Cryptobacterium curtum; 7.694293922 7.766392852 8.075822385 7.245187369 159882140 CueO Metal Resistance Copper Hydrogenivirga sp. 128-5-R1-1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenivirga; 6.799592268 7.116771787 158138771 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.150086558 7.312292401 256797161 hrcA Stress Heat shock Kangiella koreensis DSM 16069 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Kangiella;species:Kangiella koreensis; 6.586446008 7.16873037 169153723 vanA Carbon cycling Carbon degradation Others Acinetobacter baumannii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 6.647864032 7.002240206 258513372 gyrB other category gyrB Desulfotomaculum acetoxidans DSM 771 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum acetoxidans; 6.627297835 7.1697828 41332 TehB Metal Resistance Tellurium Eikenella corrodens superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Eikenella; 6.998841963 7.216740507 6.932493362 6.724661412 7.32774434 7.384371057 7.537908072 254421657 sigma_70 Stress Sigma factors Synechococcus sp. PCC 7335 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.682406382 7.356565948 7.257645731 7.3455773 7.476343928 7.278814693 7.616772488 113529050 bphD Organic Remediation Aromatics Polycyclic aromatics Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 7.014894246 7.102423214 6.934359348 7.252608296 56694937 hrcA Stress Heat shock Ruegeria pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 7.910547263 7.806491223 7.461761546 7.639380501 7.54391738 151937966 endochitinase Carbon cycling Carbon degradation Chitin Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.204015434 7.380265143 7.33014958 7.016891997 7.628477589 7.06155083 7.100804431 156740274 fnr Stress Oxygen stress Roseiflexus castenholzii DSM 13941 6.912277032 7.3443433 258537285 amoA Nitrogen Nitrification superkingdom:Archaea; 6.549504532 7.10409163 218521389 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 7.960675839 8.251017957 7.726807925 8.18598299 8.343581057 8.583573331 8.224899824 116491095 obgE Stress Radiation stress Oenococcus oeni PSU-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Oenococcus;species:Oenococcus oeni; 7.09789034 7.216163178 94985062 ChrA Metal Resistance Chromium Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 8.028670719 7.271786499 7.176681082 7.459293436 7.708449282 196203632 AceA Carbon cycling Carbon degradation others Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.470976931 7.256163373 162446917 fnr Stress Oxygen stress Acholeplasma laidlawii PG-8A 7.080979129 6.686384383 6.901395478 6.724746904 119956269 sigma_70 Stress Sigma factors Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 7.626540396 8.054125851 8.293789447 7.260340533 7.579325946 7.501150456 8.101624039 193499010 amoA Nitrogen Nitrification superkingdom:Archaea; 6.837146916 7.216581555 145254231 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.809848592 7.194249716 7.368177541 6.910926844 7.222981805 59479840 amyA Carbon cycling Carbon degradation Starch Vibrio fischeri ES114 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Vibrio fischeri; 8.224565239 8.207191571 7.914742602 8.024036374 7.841114399 7.858925301 8.320366729 7.86353861 134094484 sigma_38 Stress Sigma factors Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 7.028249614 7.765468062 7.058942354 6.967123473 7.416907416 197210229 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.002360526 7.153978923 7.521319909 7.444075569 7.027976969 74038440 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.277822239 7.372116242 151246 dehH109 Organic Remediation Chlorinated solvents superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.1824715 7.386915375 149376282 phtA Organic Remediation Aromatics Aromatic carboxylic acid Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 7.340437737 7.273182895 7.052994189 7.130822531 88189149 atzA Organic Remediation Herbicides related compound Methanospirillum hungatei JF-1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanospirillaceae;genus:Methanospirillum;species:Methanospirillum hungatei; 7.370933682 7.28524193 7.177195347 7.445435206 7.273752804 7.04009775 124001481 katE Stress Oxygen stress Exiguobacterium oxidotolerans superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 6.961373764 7.115754387 95134919 pstB Stress Phosphate limitation Desulfuromonas acetoxidans DSM 684 7.441026957 7.004602488 52422702 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia mallei ATCC 23344 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia mallei; 7.404843718 7.483143755 7.229983215 7.427819459 32266164 hrcA Stress Heat shock Helicobacter hepaticus ATCC 51449 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter hepaticus; 6.990047146 7.302156596 6.836882535 7.289988148 7.062934121 6.807301527 134142979 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 7.003243061 7.4909616 7.550353104 7.14362585 260775520 sigma_70 Stress Sigma factors Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 6.885528711 7.143531172 6.8929426 6.879285214 7.450774158 88858210 sigma_24 Stress Sigma factors Pseudoalteromonas tunicata D2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas tunicata; 7.088646169 7.350811913 7.393500513 7.537231162 254460154 dsrB Sulphur sulfite reductase Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 6.990020433 7.144729289 6.993917844 7.259207401 84667045 fnr Stress Oxygen stress Rhodobacterales bacterium HTCC2654 7.85925971 8.241187413 7.930180755 8.304119354 7.748955845 8.037313168 7.868417908 257779634 fnr Stress Oxygen stress Desulfotomaculum acetoxidans DSM 771 6.942939304 6.918154821 223717933 pmoA Carbon cycling Methane Methane oxidation Methylococcaceae bacterium T2-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae; 7.237003281 6.989418159 163734720 Catechol Organic Remediation Aromatics Other aromatics Roseobacter litoralis Och 149 7.241793981 7.783154778 7.270643446 7.256448016 78048909 pilin virulence pilin Xanthomonas campestris pv. vesicatoria str. 85-10 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas euvesicatoria; 7.865667912 7.303183199 7.588317202 7.6291436 8.296616314 8.091656117 8.08849359 222421873 ureC Nitrogen Ammonification Staphylococcus carnosus subsp. carnosus TM300 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus carnosus; 7.002839103 7.285318257 121606663 fnr Stress Oxygen stress Polaromonas naphthalenivorans CJ2 7.309108595 7.626705315 7.957378398 7.335586508 50982404 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7.562029554 7.04878849 7.274683977 7.311385146 7.440589226 7.139959288 7.498744159 7.405248911 34558185 sigma_70 Stress Sigma factors Wolinella succinogenes DSM 1740 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Wolinella;species:Wolinella succinogenes; 7.105916252 6.997514065 163763041 atzA Organic Remediation Herbicides related compound Bacillus selenitireducens MLS10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus selenitireducens; 7.942695722 7.703490291 7.599238223 7.460548922 7.695161645 208658376 colonization_factor virulence colonization factor Escherichia coli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 7.05540893 6.851096861 112801918 dmsA Organic Remediation Others Campylobacter concisus 13826 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter concisus; 7.430304012 7.151379281 42738187 ArsC Metal Resistance Arsenic Bacillus cereus ATCC 10987 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 7.306161488 7.18670939 167747342 fnr Stress Oxygen stress Anaerostipes caccae DSM 14662 7.373551607 7.165699499 227311816 hrcA Stress Heat shock Denitrovibrio acetiphilus DSM 12809 superkingdom:Bacteria;phylum:Deferribacteres;class:Deferribacteres;order:Deferribacterales;family:Deferribacteraceae;genus:Denitrovibrio;species:Denitrovibrio acetiphilus; 7.308590231 7.720191554 7.311405412 7.883553201 78223400 pimF Organic Remediation Aromatics Aromatic carboxylic acid Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 6.84405369 7.373544414 7.123535734 7.14616077 7.213243796 7.126017344 72162290 amyA Carbon cycling Carbon degradation Starch Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 7.494600714 7.641801294 7.38026489 7.571732546 7.679744235 7.602181671 7.237289938 219861464 pcaG Organic Remediation Aromatics Other aromatics Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 7.430307495 6.972639644 7.388901192 7.12435446 157368438 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 7.662846239 7.398085713 7.316540421 7.401007978 7.96385349 7.59091539 7.255246151 255011155 sigma_24 Stress Sigma factors Bacteroides fragilis 3_1_12 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 6.943854494 7.294052079 6.846355212 6.671881981 7.547587019 6.85881447 7.223306961 121533343 catB Organic Remediation Aromatics BTEX and related aromatics Thermosinus carboxydivorans Nor1 7.258423974 7.43937686 7.389684508 7.528222572 7.597010046 7.624568641 7.93267393 117925068 sigma_24 Stress Sigma factors Magnetococcus sp. MC-1 superkingdom:Bacteria;phylum:Proteobacteria;genus:Magnetococcus; 7.132726283 6.984201537 7.398644382 7.454163921 7.365613082 170017478 glnR Stress Nitrogen limitation Leuconostoc citreum KM20 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc citreum; 6.619635667 7.059375024 14023205 FTHFS Carbon cycling Acetogenesis Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 7.422730118 7.688294381 7.428497848 7.12966151 77458371 ChrA Metal Resistance Chromium Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.229251853 7.689953957 7.492823518 6.949702333 7.19644261 6.846363304 226360385 NiR Nitrogen Assimilatory N reduction Rhodococcus opacus B4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 7.888630296 7.764136786 8.315977335 8.411555542 8.258423368 8.168621731 8.304212331 46389817 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7.461362463 7.320413851 6.911257476 7.164675258 7.450840131 7.414126716 7.686900833 239822432 B_lactamase_C Antibiotic resistance Beta-lactamases Ochrobactrum intermedium LMG 3301 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 7.034205189 7.298771632 254451043 hly virulence hemolysin Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 7.478775614 7.96703784 7.630107248 7.912864822 8.081875581 7.977577863 7.853530412 254434741 sigma_38 Stress Sigma factors Nitrosococcus oceani AFC27 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 7.074978116 7.259746642 238797737 cydA Stress Oxygen limitation Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 7.403056612 7.292290969 7.054704199 6.938616398 7.75721092 112463115 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.43453266 7.295615529 7.811668553 7.497062715 7.838880184 7.87254594 116643981 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.406037469 7.697830807 119470700 AceB Carbon cycling Carbon degradation others Alteromonadales bacterium TW-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales; 6.735700647 6.871496137 6.753662857 7.110126266 15827941 SMR_antibiotics Antibiotic resistance transporter Mycobacterium leprae TN superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium leprae; 7.283917676 7.22453418 7.016935412 7.378494329 32473179 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 7.467007496 7.241189493 7.825673551 7.316494512 7.518843361 113910429 ChrA Metal Resistance Chromium Shewanella baltica OS195 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 8.032438804 7.971433494 7.786976727 7.85925479 7.902433314 8.430983175 134266903 nosZ Nitrogen Denitrification Geobacillus thermodenitrificans NG80-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermodenitrificans; 7.817934898 7.952394591 8.106143765 7.645008025 223039173 TerC Metal Resistance Tellurium Campylobacter rectus RM3267 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter rectus; 7.275985401 7.571099075 7.11721758 7.494450125 7.646827586 7.469872534 7.748351215 255767658 ara Carbon cycling Carbon degradation Hemicellulose Bacillus subtilis subsp. subtilis str. 168 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 6.85592747 7.087529961 7.01628971 7.359974007 71845819 pimF Organic Remediation Aromatics Aromatic carboxylic acid Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 7.67865165 7.688747974 7.748982247 7.960444377 7.59737337 7.588499604 88858314 sigma_38 Stress Sigma factors Pseudoalteromonas tunicata D2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas tunicata; 7.235787276 7.078603551 152996026 MFS_antibiotic Antibiotic resistance transporter Marinomonas sp. MWYL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 7.268165288 7.282518452 6.865794135 7.43903419 7.300429332 7.083086439 47564823 pap virulence adhesin Bacillus cereus G9241 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 7.833693076 7.795576669 7.666810815 7.569408072 7.828320575 7.306817322 7.660541227 188586656 proV Stress Osmotic stress Natranaerobius thermophilus JW/NM-WN-LF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Natranaerobiales;family:Natranaerobiaceae;genus:Natranaerobius;species:Natranaerobius thermophilus; 6.608018221 7.007762061 257485319 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas amygdali; 7.18201818 7.121558112 7.001390639 7.306079495 7.517827249 7.569056031 119815960 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.413646793 7.554092463 213015176 nitA Organic Remediation Aromatics Other aromatics Thermotogales bacterium TBF 19.5.1 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Kosmotoga;species:Kosmotoga olearia; 6.727332511 6.681467664 78518459 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.37603246 7.336587828 7.664889768 7.557775538 7.687801872 7.671723422 7.45851162 110592189 nirS Nitrogen Denitrification uncultured organism 7.381739187 7.357611637 7.125437925 7.513546097 7.309559041 7.062955034 67919424 ppx Phosphorus Phosphorus utilization Chlorobium limicola DSM 245 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium limicola; 6.665847596 7.434337648 66046834 cytochrome Energy process Energy process Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 7.671366823 7.482183624 7.471056838 7.619445419 7.571390813 7.620285946 156857649 APS_AprA Sulphur adenylylsulfate reductase uncultured bacterium 7.14844345 7.23757646 7.239560618 7.072630763 7.524453088 7.161987457 7.450201931 7.209193152 85723274 pilin virulence pilin Syntrophus aciditrophicus SB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Syntrophus;species:Syntrophus aciditrophicus; 7.975938399 7.982980547 7.884264479 7.864247959 7.474223048 7.616862005 7.782843009 259487609 Tet Antibiotic resistance other Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.206230229 7.585849029 85058344 obgE Stress Radiation stress Sodalis glossinidius str. 'morsitans' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Sodalis;species:Sodalis glossinidius; 7.415895604 7.434174316 7.044981512 7.268523976 7.663635074 7.687198355 7.470417938 224472734 phenol_oxidase Carbon cycling Carbon degradation Lignin Laccaria bicolor superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria; 7.260659102 7.351744888 7.243623866 7.112586452 15623217 peroxiredoxin Bioleaching Metal Resistance Sulfolobus tokodaii str. 7 7.3206187 7.063492045 6.473480768 7.255971895 6.843784017 7.012095312 124514703 glycosyl_transferase_EPS Bioleaching EPS Leptospirillum sp. Group II UBA 7.283773659 6.922602819 219862258 glnA Stress Nitrogen limitation Cyanothece sp. PCC 7425 7.370791811 7.487141143 7.542839773 8.133003001 167463655 fnr Stress Oxygen stress Paenibacillus larvae subsp. larvae BRL-230010 7.095890435 7.151017684 7.261602962 6.882440401 7.442064828 7.198752007 7.239112919 255258527 sox Sulphur Sulphur oxidation Sideroxydans lithotrophicus ES-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Sideroxydans;species:Sideroxydans lithotrophicus; 7.790622377 7.890447685 7.756836416 7.93294857 7.623410714 7.757430706 256779140 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Streptomyces hygroscopicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces hygroscopicus; 7.181548139 7.410736957 58615473 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 7.757114556 7.115328958 6.95065269 7.469112927 112800804 CorC Metal Resistance Cobalt Campylobacter concisus 13826 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter concisus; 7.436713701 7.429289988 7.139174068 7.211533946 7.444808383 7.583262658 7.264330694 226837773 obgE Stress Radiation stress Acinetobacter sp. ATCC 27244 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 6.954710539 6.890980285 222354252 hao Nitrogen Nitrification uncultured bacterium superkingdom:Bacteria; 7.4584458 7.241506527 119472069 pheA Organic Remediation Aromatics Other aromatics Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 7.197364181 7.564833715 166859559 iro virulence Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.438940853 7.216539732 218357820 gyrB other category gyrB Escherichia fergusonii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 7.150525489 7.265153564 90424279 pcc Carbon cycling Carbon fixation Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.466662326 7.842792936 7.763305973 7.630593595 7.944968687 8.10668928 58001589 pstC Stress Phosphate limitation Gluconobacter oxydans 621H superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter oxydans; 7.75906626 7.650396581 7.860060213 7.58068868 7.609626551 7.835713822 7.886798758 113723001 pcc Carbon cycling Carbon fixation Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 7.442363365 7.488317503 7.729054761 6.929137178 7.27283928 7.45322071 166854160 CopA Metal Resistance Copper Thermoanaerobacter sp. X514 6.992033143 7.007359962 6.788642364 6.780124987 7.285344339 220710726 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.767554258 7.239508383 7.805913769 8.107641827 8.169673537 8.174545049 8.168720511 77812861 CopA Metal Resistance Copper Shewanella putrefaciens CN-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella putrefaciens; 7.250464994 7.123119481 6.730039935 6.82385914 7.426581694 7.084266585 7.128978143 196229198 xylA Carbon cycling Carbon degradation Hemicellulose Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 7.41803869 7.133850268 6.825748471 6.789358623 6.886573906 7.133800222 7.115288069 222102714 nitro Organic Remediation Others Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 7.520998415 7.241060155 7.614312114 12249093 glucoamylase Carbon cycling Carbon degradation Starch Arthrobacter globiformis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.617291138 7.069127618 167360266 amyA Carbon cycling Carbon degradation Starch Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.776358116 8.071631728 7.844905202 7.860066703 258622307 endochitinase Carbon cycling Carbon degradation Chitin Vibrio mimicus VM573 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 6.969807595 7.029099395 145246056 phytase Phosphorus Phosphorus utilization Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.059526557 7.072582936 6.807136917 7.762536594 83650966 B_lactamase_A Antibiotic resistance Beta-lactamases Burkholderia thailandensis E264 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 7.256847031 7.3927187 7.112438184 7.675998869 7.641388941 7.807185695 7.578396771 7.687553616 72388589 gyrB other category gyrB Psychrobacter arcticus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 7.334933688 7.512151056 7.524663752 7.201359798 7.581296239 7.482838411 8.202374489 93353494 pilin virulence pilin Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 6.750726915 7.151083128 6.874881747 7.428681865 91225408 endochitinase Carbon cycling Carbon degradation Chitin Vibrio alginolyticus 12G01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 7.342141893 7.147758266 115523742 fnr Stress Oxygen stress Rhodopseudomonas palustris BisA53 7.109117482 7.41619947 6.931936864 7.39470654 208936496 dsrB Sulphur sulfite reductase uncultured prokaryote 7.471639835 7.200901852 7.375654397 7.209876042 149200581 nrfA Nitrogen Dissimilatory N reduction Lentisphaera araneosa HTCC2155 superkingdom:Bacteria;phylum:Lentisphaerae;order:Lentisphaerales;family:Lentisphaeraceae;genus:Lentisphaera;species:Lentisphaera araneosa; 7.777755094 7.437604805 6.994781812 7.657854012 7.701295484 7.585273587 7.404922286 7.607648792 76874868 CopA Metal Resistance Copper Pseudoalteromonas haloplanktis TAC125 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas haloplanktis; 7.118130119 7.159236346 6.898256322 7.46860916 67915005 rubisco Carbon cycling Carbon fixation Chlorobium phaeobacteroides BS1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 7.614756587 7.311511212 7.365431374 7.163056298 12667560 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium UMTRAdsr648-21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 6.969551395 7.094647354 87281227 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.397535126 7.562049441 7.567344025 7.50208052 7.712234413 7.354355968 7.678490051 7.541595261 40809644 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira; 7.402379132 7.68658177 7.274675174 7.647865751 7.283856426 7.266213936 113968643 cytochrome Energy process Energy process Shewanella sp. MR-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 7.444319692 7.767700337 7.275847094 7.024997221 7.591286078 229325195 glnA Stress Nitrogen limitation Bacillus coagulans 36D1 7.293899913 7.326000909 6.74081191 7.041465023 7.705623402 7.274083226 7.125663964 170721170 cytochrome Energy process Energy process Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.83719305 7.660289507 7.398728881 7.375217229 7.53541909 7.917186581 254433880 pstB Stress Phosphate limitation Nitrosococcus oceani AFC27 7.600686114 7.861324294 6.999209051 7.790874194 7.620574189 7.604399849 7.733470035 149822279 sigma_70 Stress Sigma factors Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 7.545094832 8.011820214 7.945474801 7.401367539 7.726396656 7.557857361 7.840714442 129279120 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 6.921266272 7.210019807 160427501 CadA Metal Resistance Cadmium Clostridium phytofermentans ISDg superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium phytofermentans; 7.348200864 7.614695355 7.50137928 7.417135235 7.383940369 7.005941687 7.658201136 262166066 exochitinase Carbon cycling Carbon degradation Chitin Vibrio mimicus VM223 7.496519621 7.805714902 8.061744241 6.99128443 7.387592008 8.053750657 154492191 ara Carbon cycling Carbon degradation Hemicellulose Parabacteroides merdae ATCC 43184 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides merdae; 7.065850494 6.962437588 37524036 gyrB other category gyrB Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 6.999280292 7.039403734 242279523 phoA Stress Phosphate limitation Desulfovibrio salexigens DSM 2638 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio salexigens; 7.501698639 7.455724414 7.352914959 7.085120725 7.94037388 7.444194025 7.391035964 7.805902241 115374390 AceA Carbon cycling Carbon degradation others Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 7.279019232 7.510600215 7.353412464 7.204806646 7.15648388 7.254357531 262374091 MATE_antibiotic Antibiotic resistance transporter Acinetobacter junii SH205 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter junii; 6.910241371 7.224381928 7.092025842 7.520379205 89069343 pimF Organic Remediation Aromatics Aromatic carboxylic acid Oceanicola granulosus HTCC2516 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 7.640368399 7.531018304 7.479820454 7.409104096 7.371271955 7.598829451 7.626643022 126236459 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.64296628 7.467764641 7.014064658 7.403497746 7.295153898 7.460098403 153007611 fnr Stress Oxygen stress Ochrobactrum anthropi ATCC 49188 7.525785684 7.673370245 7.460409043 7.803577752 219676473 pmdAB Organic Remediation Aromatics Others gamma proteobacterium NOR5-3 7.174564011 7.237382836 7.205474085 7.08556169 206677153 proV Stress Osmotic stress Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.323884897 7.377033847 7.139391729 7.178020645 7.190003559 7.089420216 194337182 dnaK Stress Heat shock Pelodictyon phaeoclathratiforme BU-1 7.256374251 7.394945394 7.366550205 7.413987902 7.2042498 7.282202322 148256201 nmoA Organic Remediation Aromatics Nitoaromatics Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.445324858 7.199427026 56130749 xylF Organic Remediation Aromatics BTEX and related aromatics Ralstonia metallidurans CH34 7.59495665 7.521249078 7.377826899 7.185889603 7.734435664 7.452327222 7.609658177 7.647805714 237685659 sigma_38 Stress Sigma factors Teredinibacter turnerae T7901 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 6.916995341 7.024853408 110648234 glnA Stress Nitrogen limitation Alcanivorax borkumensis SK2 7.273581662 7.142503026 6.949769572 7.423314078 237758568 sigma_70 Stress Sigma factors Corynebacterium kroppenstedtii DSM 44385 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium kroppenstedtii; 7.182510422 7.368734578 85695234 sigma_32 Stress Sigma factors Idiomarina baltica OS145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina baltica; 7.274600693 7.440434312 7.139186892 7.434057161 109660051 ureC Nitrogen Ammonification unidentified bacterial contaminant superkingdom:Bacteria; 7.178861649 7.166256928 7.276528108 7.298204393 7.729907585 7.759422261 7.471277725 91681468 Arylest Organic Remediation Aromatics Other aromatics Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.660964825 7.875644346 7.646690465 7.351734379 7.976369472 7.397735725 7.544356078 282600672 ABC_antibiotic_transporter Antibiotic resistance transporter Subdoligranulum variabile DSM 15176 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Subdoligranulum;species:Subdoligranulum variabile; 6.912407986 7.065300291 6.657540929 7.082477333 145299647 cydA Stress Oxygen limitation Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 6.673694421 7.477058421 60476265 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 6.885893351 7.623295246 21435824 ureC Nitrogen Ammonification Streptococcus alactolyticus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 7.133698859 7.214776323 116331699 alkK Organic Remediation Others Leptospira borgpetersenii serovar Hardjo-bovis JB197 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira borgpetersenii; 7.2623358 7.252997999 170144994 amyA Carbon cycling Carbon degradation Starch Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 7.164746319 7.12846967 7.235474202 271963319 sigma_70 Stress Sigma factors Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 7.556270256 7.467374917 7.652822356 7.65283416 7.533445433 7.58185489 13488100 phn Organic Remediation Herbicides related compound Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 7.754968927 7.142647028 91183773 pcc Carbon cycling Carbon fixation Psychroflexus torquis ATCC 700755 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Psychroflexus;species:Psychroflexus torquis; 7.225792839 6.98321873 163733589 glnA Stress Nitrogen limitation Roseobacter litoralis Och 149 7.51854301 7.447061282 7.117605668 7.582843357 7.646861316 7.509871528 7.692987741 218523675 gyrB other category gyrB Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 6.897415547 7.219797421 6.925269528 6.748699717 7.433641813 6.855490531 6.726573401 10802606 xylanase Carbon cycling Carbon degradation Hemicellulose Paenibacillus sp. KCTC8848P superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.023920671 7.403115369 6.763402452 7.552558142 6.891381434 6.843946867 7.073962413 218215460 ChrA Metal Resistance Chromium Eubacterium biforme DSM 3989 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichi;order:Erysipelotrichales;family:Erysipelotrichaceae;species:Eubacterium biforme; 7.418298877 7.163662552 126619070 phn Organic Remediation Herbicides related compound Cyanothece sp. CCY0110 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 6.85341682 7.624965524 161382272 ahpC Stress Oxygen stress Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 7.230745797 7.008431945 197210299 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.198664297 7.449767315 7.247711146 7.516495172 194683716 TerD Metal Resistance Tellurium Proteus mirabilis HI4320 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 7.720349837 7.653733314 7.639144056 7.23305811 8.289703756 217498608 amyA Carbon cycling Carbon degradation Starch Shewanella baltica OS223 6.851239188 7.249960162 221324257 obgE Stress Radiation stress Bacillus subtilis subsp. subtilis str. SMY superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 6.849267262 7.038010738 85722388 B_lactamase_A Antibiotic resistance Beta-lactamases Syntrophus aciditrophicus SB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Syntrophus;species:Syntrophus aciditrophicus; 6.873032036 7.463835243 212637453 pilin virulence pilin Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 7.099079977 7.277320467 133915613 endochitinase Carbon cycling Carbon degradation Chitin Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 7.491461895 7.339040344 7.240415734 7.468954862 240103859 pstB Stress Phosphate limitation Thermococcus gammatolerans EJ3 7.192134608 7.173319157 7.378679458 7.092116525 170676283 endolysin_transglycosylase Bacteria phage LYSIS Salmonella phage E1 order:Caudovirales;family:Siphoviridae; 6.958488666 7.24516376 7.131687309 6.633791513 7.647184181 266629446 SMR_antibiotics Antibiotic resistance transporter Caulobacter segnis ATCC 21756 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 7.202766638 7.273312888 7.084778698 7.440071815 22293912 TehB Metal Resistance Tellurium Thermosynechococcus elongatus BP-1 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Thermosynechococcus;species:Thermosynechococcus elongatus; 7.384481851 7.175069304 6.707236969 6.846535728 7.517433608 7.070935993 7.196778297 256961743 pstB Stress Phosphate limitation Enterococcus faecalis Merz96 6.671285706 7.035988283 251755889 pstB Stress Phosphate limitation Pectobacterium carotovorum subsp. carotovorum PC1 7.79342958 7.372886349 7.196367612 7.301670964 7.7959514 7.778671594 7.555170483 7.512591649 239579679 nrfA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.259724753 7.093497767 7.72325307 118424413 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.223094974 7.606901967 7.667550325 7.279142841 7.634351176 6.980330818 7.054728068 7.297244627 119864590 ChrA Metal Resistance Chromium Psychromonas ingrahamii 37 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas;species:Psychromonas ingrahamii; 6.942724721 7.229606296 6.691310518 7.553801006 38683390 PobA Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium ammoniagenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium; 7.435103235 7.48046781 7.195798228 7.445501338 7.231147924 7.374438625 228471217 pstA Stress Phosphate limitation Porphyromonas uenonis 60-3 7.082299394 7.264705994 6.993323832 6.830975894 7.440770087 7.228700432 6.955278764 7.496905548 253987646 pstC Stress Phosphate limitation Photorhabdus asymbiotica superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus; 7.127544524 7.339496563 83026010 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 6.956505709 7.438711447 7.547399304 6.866366076 67545164 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 7.701531589 7.504109356 7.421034227 8.003462284 7.987753372 7.226734721 7.953094705 99081812 nhh Organic Remediation Aromatics Nitoaromatics Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.65022723 7.383296298 7.188151056 7.286333159 7.459518707 36783660 pstB Stress Phosphate limitation Photorhabdus luminescens subsp. laumondii TTO1 7.112791361 7.074005058 15787969 dsrA Sulphur sulfite reductase Desulforhabdus amnigena superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Desulforhabdus; 7.176277744 7.29757648 7.38103589 7.048680733 7.157867269 7.170689833 21631714 bphC Organic Remediation Aromatics Polycyclic aromatics Delftia acidovorans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia; 7.345695018 7.251439845 7.314901983 6.96837043 150864666 tfdA Organic Remediation Aromatics Chlorinated aromatics Pichia stipitis CBS 6054 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Scheffersomyces;species:Scheffersomyces stipitis; 7.310284084 7.522898811 7.51084619 7.131791822 119457046 pstB Stress Phosphate limitation Lyngbya sp. PCC 8106 6.863410739 7.437499103 7.011462889 7.002223113 7.732113275 33620638 UvsW Bacteria phage REPLICATION Enterobacteria phage RB49 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.383539509 7.546157163 119953015 pstB Stress Phosphate limitation Borrelia turicatae 91E135 6.822552775 6.923743129 226837676 sigma_70 Stress Sigma factors Acinetobacter sp. ATCC 27244 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 7.460357079 7.082648291 255319138 ppk Phosphorus Phosphorus utilization Acinetobacter radioresistens SK82 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter radioresistens; 7.326137418 7.306289841 7.267399368 7.88902723 7.906191042 7.699820839 7.445300051 7.657938936 86748600 fnr Stress Oxygen stress Rhodopseudomonas palustris HaA2 7.306262183 7.314715921 7.754023764 7.810823793 7.835064771 7.789378101 7.777814741 256590793 pstA Stress Phosphate limitation Cyanothece sp. PCC 8802 7.42014739 7.357874348 94987354 dnaK Stress Heat shock Lawsonia intracellularis PHE/MN1-00 7.368474392 7.413049289 257781088 glnA Stress Nitrogen limitation Desulfotomaculum acetoxidans DSM 771 7.437896188 7.400985323 7.451042856 7.678980702 7.895473393 7.981170982 7.843993187 92918950 acetylglucosaminidase Carbon cycling Carbon degradation Chitin proteobacterium AI21 superkingdom:Bacteria;phylum:Proteobacteria; 7.80134166 7.544754166 7.563020184 7.431721011 93357656 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia metallidurans CH34 7.422093696 7.313632687 255010730 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Bacteroides fragilis 3_1_12 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 7.354314618 7.6519033 7.209489819 7.521523778 7.613325122 7.263821491 7.394983159 7.487415463 213536679 exoglucanase Carbon cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 6.918545308 7.267419935 6.919440175 7.556097549 67540156 grpE Stress Heat shock Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.692017702 7.586218054 7.908886116 7.679420851 8.041585902 7.868433276 8.483082898 160873633 pilin virulence pilin Shewanella baltica OS195 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 7.066626258 7.162139833 117981174 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 6.883763143 7.104054145 6.75594637 7.07461977 7.621383644 7.177409236 7.171596142 7.531816077 157781421 groEL Stress Heat shock Enterococcus durans superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus; 6.874251891 7.310260518 94471175 narG Nitrogen Denitrification uncultured bacterium 6.846036647 7.135472873 260617671 arcA Stress Oxygen limitation Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 7.235150313 7.06528077 162568591 aoxB Metal Resistance Arsenic uncultured bacterium superkingdom:Bacteria; 7.188360276 7.175350865 227881423 pstB Stress Phosphate limitation Halogeometricum borinquense DSM 11551 6.683513704 7.076162309 147668819 TerC Metal Resistance Tellurium Dehalococcoides sp. BAV1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.167299779 7.039939244 196200081 ahpC Stress Oxygen stress Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.400414245 7.212174405 7.191843731 7.184519611 15641448 ZntA Metal Resistance Zinc Vibrio cholerae O1 biovar eltor str. N16961 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 7.02685481 7.108929613 14161294 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 7.489108889 7.426971878 6.891187325 7.535018998 7.596102788 7.593979363 7.392462313 7.2592759 133754587 phenol_oxidase Carbon cycling Carbon degradation Lignin Piloderma croceum superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Atheliales;family:Atheliaceae;genus:Piloderma; 7.138261674 7.350432121 5802945 ArsA Metal Resistance Arsenic Bacillus sp. CDB3 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 6.932755195 6.902825327 6.49996535 7.351217682 259502935 narI Stress Oxygen limitation Lactobacillus antri DSM 16041 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus antri; 7.198526085 7.11830517 7.558816446 7.151749214 268160807 toxin virulence toxin Photobacterium damselae subsp. damselae CIP 102761 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium damselae; 7.534802092 7.406687436 7.285532759 7.24336949 118062286 catechol_B Organic Remediation Aromatics Other aromatics Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 7.438554301 7.429540625 7.448662708 7.591555845 7.225015942 7.430850917 85836184 ZntA Metal Resistance Zinc Vibrio sp. MED222 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 6.95344526 7.169335175 7.02507616 7.469839316 240171667 phoB Stress Phosphate limitation Mycobacterium kansasii ATCC 12478 8.10701524 7.658850756 8.042991538 7.893008198 169760742 cytochrome Energy process Energy process Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.362108625 7.510074241 7.225900442 7.368285066 7.519306361 7.447361638 7.51455115 160884809 ara Carbon cycling Carbon degradation Hemicellulose Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 6.923998829 6.931961568 157681749 pstB Stress Phosphate limitation Bacillus pumilus SAFR-032 7.506436053 7.090298469 6.823029487 7.42072222 6.99037435 7.045328077 251783290 nplT Carbon cycling Carbon degradation Starch Streptococcus dysgalactiae subsp. equisimilis GGS_124 7.165804565 6.972748272 238695042 scaffold Bacteria phage STRUCTURAL Enterobacteria phage JSE order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.031848693 7.416877615 188994242 ppx Phosphorus Phosphorus utilization Porphyromonas gingivalis ATCC 33277 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas;species:Porphyromonas gingivalis; 7.258174475 7.445968506 6.850848698 7.20513029 7.567957505 7.329738597 7.023931471 242789535 MFS_antibiotic Antibiotic resistance transporter Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 7.432085381 7.412245576 47155116 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 6.897306984 7.556946973 7.180116835 7.439622565 7.315192586 238753109 ppx Phosphorus Phosphorus utilization Yersinia rohdei ATCC 43380 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia rohdei; 6.849545981 7.522342354 6.831018084 7.483942099 229347848 colonization_factor virulence colonization factor Vibrio cholerae TMA 21 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 6.525235833 6.879860868 218960946 glnA Stress Nitrogen limitation Candidatus Cloacamonas acidaminovorans 7.425607564 7.103491517 6.789242386 6.950081339 7.588107403 7.004177137 7.057988684 7.350387044 260094156 pap virulence adhesin Haemophilus influenzae NT127 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus influenzae; 7.149021455 7.128024899 86360544 mer Metal Resistance Mercury Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.099683391 7.365964386 7.192394412 6.924347795 163746524 mer Metal Resistance Mercury Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 8.979561369 8.436948978 8.46430892 8.177266389 8.159202984 8.344575525 7.998089416 7.909170842 186473691 phtA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.300183717 7.582648111 7.45031175 7.434289217 7.512691645 7.580090917 7.656066813 67522677 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.363584021 7.504354487 7.225095324 7.998416621 7.641996347 7.576204427 7.970756287 7.570762743 261195244 grpE Stress Heat shock Ajellomyces dermatitidis SLH14081 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 7.012642839 6.927462483 6.870331156 7.404623126 198284037 phn Organic Remediation Herbicides related compound Acidithiobacillus ferrooxidans ATCC 53993 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 7.540219016 7.353749062 7.428554356 7.918195566 7.485578864 7.187535319 7.601492117 238508209 iro virulence Aspergillus flavus NRRL3357 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus flavus; 6.904886562 7.119209289 6.946716866 6.426707722 7.363532067 6.97668982 6.881697792 7.080638733 77978604 phn Organic Remediation Herbicides related compound Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 7.309478129 7.276750429 7.399165422 7.041274409 7.237173945 7.477301752 161620703 pcaG Organic Remediation Aromatics Other aromatics Brucella canis ATCC 23365 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Brucella;species:Brucella canis; 7.722322773 7.292009631 83852744 mer Metal Resistance Mercury Oceanicaulis alexandrii HTCC2633 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis;species:Oceanicaulis alexandrii; 7.179701728 7.262032539 198250649 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 6.914809852 7.234754268 7.003428031 7.606057243 7.170305461 6.871966234 262279677 ahpF Stress Oxygen stress Acinetobacter calcoaceticus RUH2202 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter calcoaceticus; 7.124520381 7.018754316 229860912 endochitinase Carbon cycling Carbon degradation Chitin Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 7.670271482 7.398684132 90436475 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 6.860421464 7.061758961 188027340 oxyR Stress Oxygen stress Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 7.554884885 7.697942618 7.72099845 7.367207836 7.401487742 7.255607665 7.711598317 126460053 dsrA Sulphur sulfite reductase Pyrobaculum calidifontis JCM 11548 7.764283773 7.671147711 7.442038142 7.218718865 7.751639096 7.492036349 226715236 SMR_antibiotics Antibiotic resistance transporter Laribacter hongkongensis HLHK9 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Laribacter;species:Laribacter hongkongensis; 7.517649147 7.610136018 7.573975956 7.417673203 7.46226306 7.659096482 214037521 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.279799313 7.18138477 109452473 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.865954628 7.940987092 8.285749405 8.019559298 7.741820241 7.610049648 8.079585497 83648911 sigma_70 Stress Sigma factors Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 7.096816362 7.240088409 6.869740332 7.383025746 6.973770112 7.008027301 77458361 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.063265637 7.330572399 91807186 nosZ Nitrogen Denitrification uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 6.969846361 7.437056255 55229415 ureC Nitrogen Ammonification Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 7.618439167 7.315043965 19879576 sox Sulphur Sulphur oxidation Chlorobium limicola superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium; 7.567239888 7.438660772 7.19114359 7.632530126 8.025434837 15679556 nifH Nitrogen Nitrogen fixation Methanothermobacter thermautotrophicus str. Delta H superkingdom:Archaea;phylum:Euryarchaeota;class:Methanobacteria;order:Methanobacteriales;family:Methanobacteriaceae;genus:Methanothermobacter;species:Methanothermobacter thermautotrophicus; 7.276778538 7.050413697 153814091 CadA Metal Resistance Cadmium Ruminococcus torques ATCC 27756 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus torques; 7.042256721 7.273700106 6.857717467 6.442685898 7.383307923 157082858 catB Organic Remediation Aromatics BTEX and related aromatics Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 7.67975121 7.715522094 7.974654007 7.963946129 7.735100668 209492257 fnr Stress Oxygen stress Arthrospira maxima CS-328 7.375187625 6.964995261 6.995749614 7.393300413 229326225 proV Stress Osmotic stress Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 7.464314381 7.423056654 7.626399096 7.520750473 7.446886917 7.700430026 7.737845285 251783433 ctsR Stress Protein stress Streptococcus dysgalactiae subsp. equisimilis GGS_124 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus dysgalactiae; 7.166393228 7.382088949 146295260 CadA Metal Resistance Cadmium Caldicellulosiruptor saccharolyticus DSM 8903 7.233849159 7.12728269 15074547 SMR_antibiotics Antibiotic resistance transporter Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 7.261472171 7.103485672 6.886456838 7.14362585 7.678607161 209496463 hrcA Stress Heat shock Arthrospira maxima CS-328 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira maxima; 7.063483717 7.085513753 70673041 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.09692184 7.108005153 6.853093093 7.531014192 7.181105355 7.125789227 255021330 glucoamylase Carbon cycling Carbon degradation Starch Acidithiobacillus caldus ATCC 51756 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 7.984794136 8.210342401 7.758342009 7.920264039 7.918995997 7.847962348 8.13915912 108765401 SMR_antibiotics Antibiotic resistance transporter Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 6.957216568 7.25670035 163644213 Host_recognition_T4_type Bacteria phage HOST RECOGNITION/STRUCTURAL Enterobacteria phage KEP10 order:Caudovirales;family:Myoviridae; 7.158588732 7.296032186 7.036601201 6.839584895 34452159 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas sp. HJ-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.254387792 7.149715506 7.46600457 7.249429548 7.202068552 6.913970301 7.54610666 283784162 pap virulence adhesin Citrobacter rodentium ICC168 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 7.19879444 7.500160161 7.056558013 7.15489935 7.634980069 7.683050121 7.424354075 7.937073584 229555071 nplT Carbon cycling Carbon degradation Starch Listeria grayi DSM 20601 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria grayi; 8.02082551 7.380478131 7.550950222 7.586270282 7.995048191 7.195212568 98991108 gyrB other category gyrB Mesoplasma lactucae 7.00541529 6.890059907 36787119 CopA Metal Resistance Copper Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 7.633089383 7.507988414 7.261624313 7.436374999 84667414 nasA Nitrogen Assimilatory N reduction Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 6.938201664 7.435339889 283768296 hly virulence hemolysin Bulleidia extructa W1219 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichi;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Bulleidia;species:Bulleidia extructa; 7.044218935 7.019141833 6.74758666 7.605152722 6.929702438 7.106848482 229823397 pstS Stress Phosphate limitation Catonella morbi ATCC 51271 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Catonella;species:Catonella morbi; 7.383557532 7.080033498 77956875 ZitB Metal Resistance Zinc Yersinia bercovieri ATCC 43970 7.088521326 7.024882307 6.718148503 7.487780881 6.862145951 7.091811124 7.61319859 41410115 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 7.39632388 7.335639006 6.920469062 7.272200518 212639488 cap virulence capsule Anoxybacillus flavithermus WK1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Anoxybacillus;species:Anoxybacillus flavithermus; 6.715840914 6.699792658 187725760 mer Metal Resistance Mercury Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 7.418158999 7.49539972 7.730658258 7.265087077 10174621 nagI Organic Remediation Aromatics Aromatic carboxylic acid Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 7.160429392 7.078113624 7.105588528 7.058543847 206889733 pstB Stress Phosphate limitation Thermodesulfovibrio yellowstonii DSM 11347 7.158381973 6.808283304 157319987 iro virulence Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 7.172433732 6.937418754 38639558 TerZ Metal Resistance Tellurium Klebsiella pneumoniae 7.493402411 7.557072836 7.506905491 7.456411522 7.688757147 7.586771238 157285706 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.464324563 7.300000297 7.375897667 7.533134302 146403528 cytochrome_c Bioleaching Electron transport Acidiphilium cryptum JF-5 7.356243566 7.774468484 7.61887923 7.300881688 7.854645107 7.525650269 7.880574369 156838955 cellobiase Carbon cycling Carbon degradation Cellulose Vanderwaltozyma polyspora DSM 70294 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Vanderwaltozyma;species:Vanderwaltozyma polyspora; 6.975299353 6.928877924 262259878 glnA Stress Nitrogen limitation Acinetobacter calcoaceticus RUH2202 7.068916002 7.359614535 6.947124983 7.022719999 7.62802761 6.970062234 7.002931549 6.954852137 227271093 B_lactamase_A Antibiotic resistance Beta-lactamases Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 8.229630456 8.235833191 7.435474741 8.016900652 8.133841665 7.818453769 7.749344438 8.035315028 254557805 hly virulence hemolysin Lactobacillus plantarum JDM1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus plantarum; 7.305936111 6.989997297 146294619 cytochrome Energy process Energy process Shewanella putrefaciens CN-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella putrefaciens; 7.160784484 6.95623544 169759788 exaA Organic Remediation Chlorinated solvents Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.464621097 7.225275411 7.307017399 7.374256214 192361533 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 7.068509449 7.221168682 7.006860717 7.417336771 116013244 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 6.757111106 7.467381948 7.127576987 7.466210292 76875610 ureC Nitrogen Ammonification Pseudoalteromonas haloplanktis TAC125 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas haloplanktis; 7.33466001 6.879165187 6.917252322 7.065419487 7.427538827 144944903 linB Organic Remediation Pesticides related compound Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 7.052545492 7.146875896 182417493 tutFDG Organic Remediation Aromatics BTEX and related aromatics Clostridium butyricum 5521 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium butyricum; 7.079091989 7.015248602 160917760 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.20438166 6.955977154 6.507230057 7.414118452 90105198 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.519042124 7.455542517 7.306393218 7.792993672 7.963636133 7.69277033 7.255230431 7.637630414 62468070 bco Organic Remediation Aromatics Aromatic carboxylic acid uncultured bacterium superkingdom:Bacteria; 7.07321046 6.926584484 206563958 akbF Organic Remediation Aromatics BTEX and related aromatics Burkholderia cenocepacia J2315 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 7.245440754 7.700108731 7.882000371 7.767508017 7.649992344 157679431 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.164641005 7.754459986 6.947046892 7.595345443 7.361628096 7.198437813 19911806 katE Stress Oxygen stress Halomonas sp. SK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 6.67619332 7.341824965 188585699 nitA Organic Remediation Aromatics Other aromatics Natranaerobius thermophilus JW/NM-WN-LF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Natranaerobiales;family:Natranaerobiaceae;genus:Natranaerobius;species:Natranaerobius thermophilus; 6.948997557 6.862929864 77378731 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.077351964 7.395064344 6.972223529 7.797738935 7.092521236 7.778688669 33635177 ppx Phosphorus Phosphorus utilization Prochlorococcus marinus str. MIT 9313 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 7.218788556 7.544428719 6.999991659 7.135229513 7.488796038 7.299940574 7.52681277 163815425 clpC Stress Protein stress Coprococcus eutactus ATCC 27759 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Coprococcus;species:Coprococcus eutactus; 7.527349281 7.292365959 7.42590861 6.805842388 7.232380117 7.342953014 7.680390191 110549181 tutFDG Organic Remediation Aromatics BTEX and related aromatics Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 7.246137256 6.887632577 6.733346131 7.343033915 1109684 proV Stress Osmotic stress superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 6.947342607 7.324526947 7.015658952 7.487190906 7.753169881 7.535658745 7.615129746 84509787 AceA Carbon cycling Carbon degradation others Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 7.725871055 7.520858361 7.591027729 6118533 bphC Organic Remediation Aromatics Polycyclic aromatics Pseudomonas sp. SY5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.402419899 7.332599682 6.922466851 7.529699704 15644415 xylA Carbon cycling Carbon degradation Hemicellulose Thermotoga maritima MSB8 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga;species:Thermotoga maritima; 7.451652554 7.351785059 6.951499887 7.268630827 7.435389786 7.319022967 160213713 primase Bacteria phage REPLICATION Enterobacteria phage JS98 order:Caudovirales;family:Myoviridae;genus:T4-like viruses;species:Enterobacteria phage JS; 7.113965051 7.154738783 6.985433784 7.417648308 214036323 obgE Stress Radiation stress marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.150284115 7.185525641 167354767 pstA Stress Phosphate limitation Shewanella halifaxensis HAW-EB4 7.239854552 7.197336617 6.806438548 7.005820932 7.508049401 150839214 cellobiase Carbon cycling Carbon degradation Cellulose Marinomonas sp. MWYL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 7.382418862 6.934359534 7.104913763 7.29076567 262310577 narJ Stress Oxygen limitation Acinetobacter junii SH205 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter junii; 7.189415992 7.568524016 7.213196181 6.937818128 7.578977524 39970305 tftH Organic Remediation Aromatics Chlorinated aromatics Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 7.541168626 7.616987208 7.87343107 7.664542249 7.850750302 7.896111256 8.163300183 168335134 ppx Phosphorus Phosphorus utilization Epulopiscium sp. 'N.t. morphotype B' superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Epulopiscium; 7.396501539 7.271148789 227438854 Host_recognition_T4_type Bacteria phage HOST RECOGNITION/STRUCTURAL Enterobacteria phage RB51 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.090769779 6.977098551 20090510 MFS_antibiotic Antibiotic resistance transporter Methanosarcina acetivorans C2A superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina acetivorans; 7.308805639 7.304470985 7.028006347 7.378057655 192764334 narG Nitrogen Denitrification uncultured bacterium 7.324251044 7.477953975 7.124834854 7.552418527 7.606765815 7.444813962 7.134314863 7.536640764 119513688 ureC Nitrogen Ammonification Nodularia spumigena CCY9414 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nodularia;species:Nodularia spumigena; 7.019819595 7.043088781 1262356 gyrB other category gyrB Mycobacterium leprae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 6.984728322 7.191066763 209539069 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.408858279 7.505254947 90023524 ChrA Metal Resistance Chromium Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 6.644349324 7.19664811 33391289 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.124812177 6.926305004 229450740 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Bacteroides sp. 2_2_4 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 7.283426425 7.479371781 7.115927697 7.187952358 7.686467685 7.175238733 7.169371782 70672915 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.396669093 7.357375354 254460072 ureC Nitrogen Ammonification Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.342375612 7.542470736 7.547463619 7.26159585 7.486578146 7.563780903 7.349333737 7.684384396 91680992 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.242261531 7.32800556 7.142843011 6.926321767 86140317 pcc Carbon cycling Carbon fixation Flavobacterium sp. MED217 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Leeuwenhoekiella;species:Leeuwenhoekiella blandensis; 7.168844163 7.358146912 104304139 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7.254298989 7.081078343 212672825 dsrA Sulphur sulfite reductase Desulfovibrio piger ATCC 29098 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio piger; 7.716397801 7.944252589 7.745162856 7.922255285 7.753499204 7.552833866 7.629489797 7.395959961 51243156 pcpE Organic Remediation Herbicides related compound Sphingomonas sp. tfd44 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 6.706445591 7.406676758 145692872 linC Organic Remediation Pesticides related compound Pseudomonas aeruginosa superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.084521434 7.539931863 7.615246153 7.535177365 7.506887387 7.21327633 83017120 dbfB Organic Remediation Aromatics Heterocyclic aromatics Paenibacillus sp. YK5 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.239244431 7.319845479 7.087423135 6.720632268 7.629954482 260590721 sigma_24 Stress Sigma factors Prevotella veroralis F0319 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella veroralis; 7.066783367 7.057208949 149825673 oxyR Stress Oxygen stress Limnobacter sp. MED105 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 7.256960563 7.442272431 7.257728448 7.305315369 7.399910647 7.381024867 160900351 ppx Phosphorus Phosphorus utilization Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.452997189 7.504430677 7.510520046 7.961735644 7.181041896 7.05360357 7.610614587 78221556 cytochrome Energy process Energy process Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 8.428266634 8.492000869 8.200517027 8.515637806 8.276294391 8.429134847 8.594197222 8.445901682 190663717 phenol_oxidase Carbon cycling Carbon degradation Lignin Clavariopsis aquatica superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Microascales;family:Halosphaeriaceae;genus:Clavariopsis; 7.316036656 7.564034047 158139847 vanA Carbon cycling Carbon degradation Others Alkaliphilus oremlandii OhILAs superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus oremlandii; 7.009426773 7.284053029 212560819 glnR Stress Nitrogen limitation Anoxybacillus flavithermus WK1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Anoxybacillus;species:Anoxybacillus flavithermus; 6.720515009 6.86168979 6.842188621 7.277965905 240081092 fnr Stress Oxygen stress Neisseria gonorrhoeae FA19 7.14481574 6.929735119 159902999 ppx Phosphorus Phosphorus utilization Prochlorococcus marinus str. MIT 9211 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 7.172496614 7.047368578 116096219 ppx Phosphorus Phosphorus utilization Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc mesenteroides; 7.168545616 7.303671743 7.093538986 7.498463946 171705267 ara Carbon cycling Carbon degradation Hemicellulose Anoxybacillus kestanbolensis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Anoxybacillus; 6.989033681 7.123809658 255007911 obgE Stress Radiation stress Bacteroides fragilis 3_1_12 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 7.050511465 7.021908699 150376805 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 7.210871269 6.974035949 38640157 major_capsid_protein Bacteria phage STRUCTURAL Aeromonas phage Aeh1 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.681113363 7.378181798 7.606853039 7.371634411 108760724 TerC Metal Resistance Tellurium Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 7.686425291 7.658106315 7.26837581 7.669085669 7.772493593 7.511247699 7.73908279 146190950 ureC Nitrogen Ammonification Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.352512669 7.660953333 7.488326002 7.68291125 260606770 amyA Carbon cycling Carbon degradation Starch Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 7.29454955 7.642803423 7.670776648 7.498744077 8.137971834 8.436440533 7.796066278 29144215 CadA Metal Resistance Cadmium Salmonella enterica subsp. enterica serovar Typhi str. Ty2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 7.424334556 7.832421111 7.913980208 7.716018393 7.962539633 7.813375241 7.737263074 8.032015186 256640798 fnr Stress Oxygen stress Acetobacter pasteurianus IFO 3283-07 6.712629991 7.097623385 15073413 alkK Organic Remediation Others Sinorhizobium meliloti superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium; 7.744024758 8.055361324 7.672336426 7.776490905 8.014969011 205373993 pstB Stress Phosphate limitation Bacillus coahuilensis m4-4 7.223358165 6.954496704 3157700 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 7.675908207 7.476675093 7.303606998 7.684980856 7.530556385 7.565652446 7.58127171 7.282429173 217503028 bphF1 Organic Remediation Aromatics Polycyclic aromatics Methylocella silvestris BL2 7.647710053 7.51766658 7.719999372 7.571700179 7.484042815 8.309031843 251755387 nrfA Nitrogen Dissimilatory N reduction Pectobacterium carotovorum subsp. carotovorum PC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 6.959547594 7.164904116 7.069700874 6.876023305 7.540004247 7.290841528 7.607988052 158438702 BADH Organic Remediation Aromatics Other aromatics Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 6.84150354 7.041194853 6.792541365 7.404025477 11078721 gyrB other category gyrB Pseudomonas fulva superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 6.991995385 7.256042705 113954876 ureC Nitrogen Ammonification Synechococcus sp. CC9311 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 6.795551587 7.068024931 198251734 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 7.376286334 7.407242763 151586963 atzA Organic Remediation Herbicides related compound Halorubrum lacusprofundi ATCC 49239 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 7.961456244 7.976015582 7.63690772 8.027615515 7.963622852 8.03181084 13375555 RNA_dependent__RNA_polymerase Bacteria phage REPLICATION Bacteriophage AP205 family:Leviviridae;genus:Levivirus; 7.295258023 7.32118284 7.165980265 7.373011828 7.577719605 28872429 ahpC Stress Oxygen stress Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 6.969308119 7.527945416 7.504954163 7.066330299 7.66828716 7.306948775 7.19779449 52004968 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 7.261716241 7.561864762 242132144 pstB Stress Phosphate limitation Dickeya dadantii Ech703 7.281830104 7.593755745 7.776617185 7.412777228 7.708646146 7.461251375 7.44840218 7.633292243 8388793 ZntA Metal Resistance Zinc Pseudomonas syringae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 6.929841891 7.210715115 6.855850164 7.475899802 91689265 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.162935033 7.276971911 7.060232054 7.356661716 99083109 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.048447529 6.957361713 119951773 pheA Organic Remediation Aromatics Other aromatics Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 7.666860674 7.347588637 7.344489622 7.355582709 7.352471376 7.056887018 262316206 pstB Stress Phosphate limitation Acinetobacter johnsonii SH046 7.481773286 7.052046914 221533676 pstB Stress Phosphate limitation Rhodobacteraceae bacterium KLH11 7.235453092 7.451614982 7.574365512 7.512279264 7.318582462 7.35489167 7.362459799 119396388 pheA Organic Remediation Aromatics Other aromatics Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7.254506627 7.979165176 8.056378355 7.621617058 7.757988586 7.439913575 7.927977727 7.991636172 73537757 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.069497274 7.00845734 33414636 T4_recomb_endonuclease Bacteria phage REPLICATION Aeromonas phage Aeh1 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.319720615 7.504430877 209695875 pstB Stress Phosphate limitation Aliivibrio salmonicida LFI1238 6.960226434 7.050119474 6.440538398 7.259282361 6.762350211 7.406052288 13242055 phtA Organic Remediation Aromatics Aromatic carboxylic acid Arthrobacter keyseri superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.486272232 7.657705391 7.726070817 7.622349463 7.920091198 163862232 hly virulence hemolysin Bacillus weihenstephanensis KBAB4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus weihenstephanensis; 6.719008913 7.163463406 116069485 sigma_70 Stress Sigma factors Synechococcus sp. RS9916 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.285979087 8.296388941 8.534849531 8.040927573 8.49337372 7.990075032 7.860894936 8.312770571 68536202 TerC Metal Resistance Tellurium Corynebacterium jeikeium K411 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 7.830940709 7.687020876 7.774558324 7.4392188 7.916737375 7.73274505 7.182763282 7.402262579 169834497 srt virulence surface protein Streptococcus pneumoniae Hungary19A-6 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus pneumoniae; 7.397418953 7.117990256 6.906141934 6.806717464 7.55325584 120604637 pimF Organic Remediation Aromatics Aromatic carboxylic acid Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 7.439220377 7.236289449 7.448733165 7.168331207 7.314307104 6.990789323 7.354708151 78221764 cytochrome Energy process Energy process Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 7.17650489 7.531669065 7.62280087 7.448009573 7.451884753 7.399325529 7.885866176 15644588 pulA Carbon cycling Carbon degradation Starch Thermotoga maritima MSB8 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga;species:Thermotoga maritima; 7.321621035 7.315928933 157374199 glnA Stress Nitrogen limitation Shewanella sediminis HAW-EB3 7.150530383 6.907042833 113903423 xylA Carbon cycling Carbon degradation Hemicellulose Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 7.350844034 7.435560499 6.890553635 6.883036039 7.574865186 7.105979544 7.045987216 38004648 nahA Organic Remediation Aromatics Polycyclic aromatics Pseudomonas fluorescens 7.264866973 7.29193607 7.270916402 7.857730407 7.166633516 6.937789828 7.699885473 167564772 mer Metal Resistance Mercury Burkholderia oklahomensis EO147 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia oklahomensis; 7.409872585 7.018936328 197282216 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.075190622 7.088171295 256036519 endochitinase Carbon cycling Carbon degradation Chitin Chitinophaga pinensis DSM 2588 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 6.635189328 6.928576468 6.765600496 7.406927684 119949662 katE Stress Oxygen stress Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 7.503457763 7.373718782 7.05541267 7.40918916 121998730 dsrA Sulphur sulfite reductase Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 7.639420216 7.886466651 7.378952207 8.351005108 7.984090911 7.927255439 8.202590673 94265339 amyA Carbon cycling Carbon degradation Starch delta proteobacterium MLMS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 7.614439342 7.656831301 7.623181772 8.175384801 8.180972446 89349265 ppx Phosphorus Phosphorus utilization Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 7.44847331 7.638849895 8.573744039 8.305349561 8.509862323 8.230266054 8.350387532 170775847 SMR_antibiotics Antibiotic resistance transporter Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 7.150832598 7.339090832 151559372 gyrB other category gyrB Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 7.027764087 7.293525424 157313863 obgE Stress Radiation stress Thermotoga lettingae TMO superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga;species:Thermotoga lettingae; 7.464252411 7.159235837 7.045696473 7.466550395 68548173 CopA Metal Resistance Copper Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 7.370827041 7.517683321 218779417 APS_AprA Sulphur adenylylsulfate reductase Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 7.475967036 7.414955568 7.157680983 7.741221776 19912123 gyrB other category gyrB Cytophaga sp. T-326 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Cytophaga; 7.107602123 7.378359719 6.837559057 7.296277441 87281020 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 6.837914034 7.425810103 6.949553017 6.664829772 7.632626218 7.023910282 7.009385144 119391791 primase Bacteria phage REPLICATION Yersinia phage Berlin 7.18611843 7.17481845 6.997262146 6.626646133 7.242669347 7.231487263 229542169 katE Stress Oxygen stress Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 7.291013227 6.979840867 6.81253598 7.279829101 239506943 glnA Stress Nitrogen limitation Kosmotoga olearia TBF 19.5.1 7.036297935 7.015374277 6.516932447 7.330431232 170725290 ahpC Stress Oxygen stress Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 7.125443224 6.881441263 6.853366325 7.3152148 98975756 amyA Carbon cycling Carbon degradation Starch Sphingopyxis alaskensis RB2256 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 7.402023113 7.393287732 8.096991412 3283942 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 7.739649919 7.577070151 7.576621442 229477515 pstA Stress Phosphate limitation Planctomyces limnophilus DSM 3776 7.238525625 7.081555385 6.810983846 7.597483665 7.194306874 7.028194 7.159337523 170655540 fnr Stress Oxygen stress Methylobacterium radiotolerans JCM 2831 7.22876258 7.240178302 257873610 xylA Carbon cycling Carbon degradation Hemicellulose Enterococcus casseliflavus EC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus casseliflavus; 7.412335824 7.084034226 6.872368888 7.410956491 221532778 nhh Organic Remediation Aromatics Nitoaromatics Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 7.56463585 7.359671044 152992873 ahpC Stress Oxygen stress Sulfurovum sp. NBC37-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;genus:Sulfurovum; 7.098447496 7.37616536 7.264325196 7.711244651 7.231921665 7.608569357 114539795 SMR_antibiotics Antibiotic resistance transporter Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 7.40789747 7.3266526 6.71316772 7.396494817 7.182771925 6.911534674 7.549526791 177672716 CopA Metal Resistance Copper Micrococcus luteus NCTC 2665 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus;species:Micrococcus luteus; 7.616196813 7.844230935 7.213302668 7.307746629 7.57428568 7.235715862 7.551243518 7.312635834 154248096 ChrA Metal Resistance Chromium Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8.035137347 7.729604529 7.948117062 7.945319843 8.045939556 7.918809465 8.053060464 7.532609846 157804843 AprA Sulphur adenylylsulfate reductase Thiorhodovibrio winogradskyi 6.876085736 6.922835332 7.681157263 7.433477532 77460480 glnA Stress Nitrogen limitation Pseudomonas fluorescens Pf0-1 7.270619873 7.395861904 7.157484027 7.220172105 7.629171436 7.206161233 7.290120643 157065982 tutFDG Organic Remediation Aromatics BTEX and related aromatics Escherichia coli HS superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 6.843896259 7.123690327 6.84298696 7.700027384 227368235 ppx Phosphorus Phosphorus utilization Chryseobacterium gleum ATCC 35910 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Chryseobacterium;species:Chryseobacterium gleum; 7.057939274 6.877807601 251787840 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 7.135058006 7.58461069 7.011365177 7.360893583 7.185031757 7.32151253 262201798 sigma_24 Stress Sigma factors Gordonia bronchialis DSM 43247 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 7.346840571 7.251043291 66574318 nbaC Organic Remediation Aromatics Nitoaromatics Xanthomonas campestris pv. campestris str. 8004 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 6.803579119 6.901085463 6.632134848 7.381934343 229611205 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6.883348588 6.929941284 63255155 type_III_secretion virulence secretion Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 7.794128653 7.780149659 7.793443868 7.718765085 7.801731567 7.759442605 7.665124621 156859885 ara Carbon cycling Carbon degradation Hemicellulose Bacteroides uniformis ATCC 8492 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides uniformis; 7.32634908 7.115749534 7.202086269 7.174259013 158522020 linB Organic Remediation Pesticides related compound Candidatus Desulfococcus oleovorans Hxd3 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus;species:Desulfococcus oleovorans; 7.140470406 7.132985059 6.686530507 7.132198302 42525192 grpE Stress Heat shock Bdellovibrio bacteriovorus HD100 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 6.659327523 7.303346289 209501652 MFS_antibiotic Antibiotic resistance transporter Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.484463516 7.327843004 8.145370252 7.717354979 7.869552253 7.766252018 8.02743356 7.678740054 78036074 chnB Organic Remediation Other Hydrocarbons Xanthomonas campestris pv. vesicatoria str. 85-10 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas euvesicatoria; 8.147647579 7.830185759 7.74807458 7.948108878 7.85193285 7.910909358 7.705911655 242392065 ctsR Stress Protein stress Streptococcus dysgalactiae subsp. equisimilis GGS_124 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus dysgalactiae; 8.059181551 7.958762587 7.810805078 7.842473355 7.528967973 7.410122111 140713422 nasA Nitrogen Assimilatory N reduction uncultured marine bacterium superkingdom:Bacteria; 6.929361463 7.407168554 7.429392735 7.493359784 7.741675397 7.453553253 66734578 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 6.850477506 7.127698577 71143448 endochitinase Carbon cycling Carbon degradation Chitin Trichoderma atroviride superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Trichoderma; 7.801638377 7.353180809 7.261508031 7.34254106 120553322 ahpC Stress Oxygen stress Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 7.272745741 7.495126304 7.738637429 7.483554471 7.730073401 7.858279161 3378523 cda Carbon cycling Carbon degradation Starch Thermotoga neapolitana superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga; 7.432947592 7.368761609 7.487545294 197626331 pstS Stress Phosphate limitation Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 7.491393656 7.713465078 7.072010062 7.583541389 7.670358264 7.507158786 7.401405905 7.527989568 40787986 toxin virulence toxin Yersinia pestis KIM superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia pestis; 7.009027928 6.985527395 6.78556419 7.451793704 33563482 nahA Organic Remediation Aromatics Polycyclic aromatics Bordetella pertussis Tohama I 7.442895798 7.599496977 7.592997653 7.206154512 7.262974433 7.734978621 74095511 B_lactamase Antibiotic resistance Beta-lactamases Cupriavidus pauculus superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 7.430876037 7.476772586 7.091466924 7.517817817 7.620065232 7.358479056 7.561833697 205375348 sigma_24 Stress Sigma factors Bacillus coahuilensis m4-4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coahuilensis; 6.936772 7.346044137 7.053962304 7.178795985 7.198614055 254294879 iro virulence Hirschia baltica ATCC 49814 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hirschia;species:Hirschia baltica; 7.811781479 7.877910243 85818080 sigma_24 Stress Sigma factors Dokdonia donghaensis MED134 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Dokdonia;species:Dokdonia donghaensis; 6.879931863 7.141957175 145218861 dsrB Sulphur sulfite reductase Prosthecochloris vibrioformis DSM 265 7.619530971 7.303855003 7.772042509 7.252335429 7.394592063 7.472758599 8.050813602 109452504 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.20158598 7.093275988 7.234810731 7.526291522 23015437 pulA Carbon cycling Carbon degradation Starch Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 7.292701466 6.967456195 214039074 pstB Stress Phosphate limitation marine gamma proteobacterium HTCC2148 7.436339515 7.14259834 119960116 dsrA Sulphur sulfite reductase uncultured prokaryote 7.584506196 7.093466083 7.32440389 7.201790927 7.183161512 254407069 ara Carbon cycling Carbon degradation Hemicellulose Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 7.328637572 7.489665674 110648035 sigma_38 Stress Sigma factors Alcanivorax borkumensis SK2 7.712332047 7.615039786 7.196557058 7.33037102 7.626128524 7.608066314 7.450570544 7.727400453 152994790 ChrA Metal Resistance Chromium Marinomonas sp. MWYL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 7.255613354 7.02325968 133739426 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 6.799005711 6.984836642 169830068 ctsR Stress Protein stress Lysinibacillus sphaericus C3-41 7.393967835 7.331400627 6.690959809 7.450637742 256687384 SMR_antibiotics Antibiotic resistance transporter Kytococcus sedentarius DSM 20547 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermacoccaceae;genus:Kytococcus;species:Kytococcus sedentarius; 7.007547528 7.42075005 8.125078654 7.513875129 7.439799046 7.497245396 239506066 amyA Carbon cycling Carbon degradation Starch Kosmotoga olearia TBF 19.5.1 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Kosmotoga;species:Kosmotoga olearia; 7.658976524 7.987601794 222120724 SMR_antibiotics Antibiotic resistance transporter Macrococcus caseolyticus JCSC5402 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Macrococcus;species:Macrococcus caseolyticus; 7.063232306 7.059492538 6.621117831 7.267722128 118686284 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Marinomonas sp. MWYL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 7.19820885 8.004113197 6.95375586 7.811012988 7.354195868 7.377682295 7.373824792 114776701 fnr Stress Oxygen stress Mariprofundus ferrooxydans PV-1 7.659389895 7.647369738 7.484904057 7.452338725 7.926151184 7.663612684 7.708810325 7.763398601 148590452 phenol_oxidase Carbon cycling Carbon degradation Lignin Morchella crassipes superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Pezizomycetes;order:Pezizales;family:Morchellaceae;genus:Morchella; 7.143359892 7.188176764 106771320 pcc Carbon cycling Carbon fixation Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 7.33621007 7.322607935 7.337092576 7.307340933 7.269986185 7.388665649 7.236996338 46307902 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6.869655958 6.948920623 167854609 katE Stress Oxygen stress Haemophilus parasuis 29755 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus parasuis; 7.278584996 7.057185363 6.69912593 7.325423225 207738798 pulA Carbon cycling Carbon degradation Starch Ralstonia solanacearum IPO1609 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 8.026206667 8.217147189 8.74313448 8.320544203 8.424164566 8.22572252 8.29256216 8.436001464 260173966 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Bacteroides sp. D2 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 7.166636007 6.996261715 229869061 endochitinase Carbon cycling Carbon degradation Chitin Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 7.543851975 7.443094304 118762773 vanA Carbon cycling Carbon degradation Others Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 7.672616076 7.425760562 7.267934962 7.363997288 7.583532636 7.446650628 7.813594908 7.607960971 171319012 type_III_secretion virulence secretion Burkholderia ambifaria MEX-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 7.497232271 7.314704367 7.221096264 7.456816969 7.701228625 7.118747876 7.480792254 83575502 glnA Stress Nitrogen limitation Rhodospirillum rubrum ATCC 11170 7.433443 7.493288247 6.968249555 7.413473231 7.470544622 7.504335575 7.720120057 119406785 nagG Organic Remediation Aromatics Aromatic carboxylic acid Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 7.209834436 7.031900939 227108255 fnr Stress Oxygen stress Chryseobacterium gleum ATCC 35910 6.891942294 7.370312364 91788333 phoB Stress Phosphate limitation Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 7.485007062 7.803330204 8.165538028 7.328735951 8.196756677 91716187 sigma_70 Stress Sigma factors Shewanella denitrificans OS217 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella denitrificans; 7.218768022 7.015502533 186465035 nagG Organic Remediation Aromatics Aromatic carboxylic acid Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 7.429563831 7.473311042 7.147088692 7.248555484 7.815140148 7.159776676 7.259403513 7.359878386 119816798 linB Organic Remediation Pesticides related compound Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 6.938703051 7.245973855 7.039613705 7.297803911 7.325169327 7.584858224 221065242 ChrA Metal Resistance Chromium Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.202162087 7.076035939 6.714198366 7.028156595 7.669281405 7.207971851 7.013327514 119225946 catechol_B Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 7.726301212 7.118110056 7.638818093 7.417948358 8.017786745 119391549 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.571913421 7.393334166 7.512953454 7.554254712 7.329808957 7.222901882 37360914 alkB Organic Remediation Other Hydrocarbons Alcanivorax borkumensis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 7.268658946 7.507100401 257149521 ppx Phosphorus Phosphorus utilization Lactobacillus rhamnosus GG superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 6.890759404 6.931239707 37956818 primase Bacteria phage REPLICATION Enterobacteria phage T7 7.102847871 7.09684705 7.276912435 6.992549043 114320324 rubisco Carbon cycling Carbon fixation Alkalilimnicola ehrlichei MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 7.751069383 7.890976457 7.779423728 6.989732093 7.330995726 7.579181665 7.920169768 8347777 endochitinase Carbon cycling Carbon degradation Chitin Bacillus circulans superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.291311121 7.167662999 219722776 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Stenotrophomonas sp. SKA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 7.329708701 7.545386671 7.151571206 7.165816561 74381896 lip Carbon cycling Carbon degradation Lignin Pleurotus sapidus 7.287539944 7.293002022 7.254471155 7.196807888 7.34909768 7.157117093 88916419 Apc Organic Remediation Aromatics BTEX and related aromatics Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 7.430187908 7.395046234 7.200336033 7.278799339 163799428 glnA Stress Nitrogen limitation Methanococcus voltae A3 7.009313058 7.324792818 220904762 katE Stress Oxygen stress Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 7.377720808 7.352303836 7.246302589 7.312816333 120604851 AceB Carbon cycling Carbon degradation others Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 7.624651472 7.733769788 8.06148505 8.058960397 7.54744385 8.0031327 7.777823288 13259189 mcrA Carbon cycling Methane Methane production uncultured methanogen RS-MCR04 superkingdom:Archaea;phylum:Euryarchaeota; 7.33461435 7.31349696 83771172 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus oryzae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 7.234143072 7.349857635 7.075879464 7.362146001 257477043 pilin virulence pilin Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 7.086696763 7.587593982 7.595388718 7.427926301 7.880205584 7.306221122 7.63154754 7.89738507 227350877 hly virulence hemolysin Lactobacillus vaginalis ATCC 49540 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus vaginalis; 6.729841069 6.956327877 6.66217039 7.213803807 91693035 chnB Organic Remediation Other Hydrocarbons Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.530571579 7.294144955 7.123605681 7.327442894 7.548273533 221563248 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 7.234605822 7.169569015 7.254152908 7.11530247 6599024 scaffold Bacteria phage STRUCTURAL Bacteriophage phiYeO3-12 order:Caudovirales;family:Podoviridae;genus:T7-like viruses; 7.319887351 7.285005674 156255124 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 6.818535331 7.181878175 121302162 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 7.598390321 7.87103175 7.903045183 7.410320223 7.931902754 7.474223048 7.7205573 7.870019412 28870233 proX Stress Osmotic stress Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 7.231841287 7.115740998 37522556 SMR_antibiotics Antibiotic resistance transporter Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 7.394088266 7.46431639 7.341494627 7.129713213 7.619521425 149911439 atzA Organic Remediation Herbicides related compound Moritella sp. PE36 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Moritellaceae;genus:Moritella; 6.712746709 7.029601187 261417021 clpC Stress Protein stress Fibrobacter succinogenes subsp. succinogenes S85 superkingdom:Bacteria;phylum:Fibrobacteres;class:Fibrobacteres;order:Fibrobacterales;family:Fibrobacteraceae;genus:Fibrobacter;species:Fibrobacter succinogenes; 6.717469895 7.040306756 7.523826316 160880044 ChrA Metal Resistance Chromium Clostridium phytofermentans ISDg superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium phytofermentans; 6.895959537 7.026481454 7.666800826 7.320516214 7.366914457 118072019 nifH Nitrogen Nitrogen fixation Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 6.846714821 6.999521277 72383852 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.07614868 7.396162564 225701010 ctsR Stress Protein stress Streptococcus equi subsp. zooepidemicus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus equi; 7.361009887 7.450343694 7.583467709 7.167180677 7.79335935 7.171971854 7.391859106 7.193829638 237500821 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Tolumonas;species:Tolumonas auensis; 7.248489829 7.056399811 281408275 obgE Stress Radiation stress Clostridium thermocellum JW20 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 7.358381958 7.535122721 7.692274918 7.73958459 7.141167511 7.137503277 7.521599035 115373383 exochitinase Carbon cycling Carbon degradation Chitin Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 6.73433 6.942628965 66045308 Arylest Organic Remediation Aromatics Other aromatics Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 7.389825082 7.067310187 6.97050988 6.955108988 114319487 ZntA Metal Resistance Zinc Alkalilimnicola ehrlichei MLHE-1 7.5096585 7.895510955 7.973217252 8.236050356 8.170255248 8.38068162 8.104013387 7.951885704 256742274 rubisco Carbon cycling Carbon fixation Thiomonas intermedia K12 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas;species:Thiomonas intermedia; 7.137495647 7.403045424 163864227 pstC Stress Phosphate limitation Bacillus weihenstephanensis KBAB4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus weihenstephanensis; 7.201560684 7.043929233 146341362 ChrA Metal Resistance Chromium Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.941731482 7.77787774 8.280964171 8.214334752 8.479618021 8.482679911 7.974142536 89111271 cydA Stress Oxygen limitation Shewanella violacea superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella violacea; 7.186457165 7.045434181 227896759 clpC Stress Protein stress Lactobacillus plantarum subsp. plantarum ATCC 14917 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus plantarum; 6.519894788 6.786473589 6.589161303 7.19251912 29647422 pheA Organic Remediation Aromatics Other aromatics Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.156106469 7.481450475 7.28925675 7.659029293 32397024 NiR Nitrogen Assimilatory N reduction Rhodopirellula baltica SH 1 6.731963234 7.132528801 7.257550244 7.030428633 146304578 glycosyl_transferase_EPS Bioleaching EPS Metallosphaera sedula DSM 5348 7.358277597 7.452639599 7.202782175 6.899188504 3724169 bco Organic Remediation Aromatics Aromatic carboxylic acid Thauera aromatica superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 7.319539158 7.537093695 7.403753971 7.473055775 7.43911803 57225299 rd Organic Remediation Chlorinated solvents Dehalococcoides ethenogenes 195 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides;species:Dehalococcoides ethenogenes; 7.02206433 7.17352706 283476825 obgE Stress Radiation stress Erwinia pyrifoliae DSM 12163 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia pyrifoliae; 7.416820052 7.136696391 6.982823359 7.510726528 126636814 fnr Stress Oxygen stress Shewanella loihica PV-4 7.010404903 6.94578073 212530132 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.218882375 7.663170095 7.452605471 7.481674431 7.650721055 7.758339358 257457582 fnr Stress Oxygen stress Treponema vincentii ATCC 35580 7.091475502 7.08363657 7381242 sox Sulphur Sulphur oxidation Starkeya novella superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Starkeya; 7.674819073 8.131602356 8.143772964 8.173387668 8.104305042 241890905 xylA Carbon cycling Carbon degradation Hemicellulose Sphingobacterium spiritivorum ATCC 33861 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium;species:Sphingobacterium spiritivorum; 6.743259142 6.764282798 6.902653619 6.716724955 95111189 benAB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae; 7.435282993 7.708351772 7.078357645 7.434556048 7.231811569 7.331540364 161379852 bclA Organic Remediation Aromatics Aromatic carboxylic acid Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 7.729996515 7.560809085 7.598389906 7.504535574 197335193 alkK Organic Remediation Others Vibrio fischeri MJ11 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Vibrio fischeri; 7.329173078 7.072444091 7.045091722 7.02420042 7.12288794 7.276462671 7.247444477 188586020 type_III_secretion virulence secretion Natranaerobius thermophilus JW/NM-WN-LF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Natranaerobiales;family:Natranaerobiaceae;genus:Natranaerobius;species:Natranaerobius thermophilus; 7.099946416 7.12119004 16119717 sigma_24 Stress Sigma factors Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.335790855 7.346820045 7.496516338 7.695116412 170774741 sigma_24 Stress Sigma factors Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 7.140836044 7.678560762 8.13292609 7.492100588 7.569544089 7.466359496 229013991 SMR_antibiotics Antibiotic resistance transporter Bacillus mycoides DSM 2048 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus mycoides; 7.601683971 7.518873123 7.513712701 7.689672495 7.554810148 7.546400156 7.733211421 152976704 pstC Stress Phosphate limitation Bacillus cereus subsp. cytotoxis NVH 391-98 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cytotoxicus; 7.00202212 7.314412453 134100023 ureC Nitrogen Ammonification Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 7.947003522 7.95627319 8.037958465 7.594648333 8.126420126 8.12402467 8.041357465 8.368204212 89087580 ChrA Metal Resistance Chromium Bacillus sp. NRRL B-14911 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.40754021 7.4309228 158522485 sigma_32 Stress Sigma factors Desulfococcus oleovorans Hxd3 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus;species:Desulfococcus oleovorans; 7.084058377 7.161487597 30249100 silC Metal Resistance Silver Nitrosomonas europaea ATCC 19718 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas europaea; 7.220165177 7.369021343 17384290 helicase_family_4 Bacteria phage REPLICATION Enterobacteria phage T3 6.933810557 7.303695607 7.207551144 6.715863776 6.963383772 7.593154515 258632934 katE Stress Oxygen stress Dickeya dadantii Ech586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 6.954838383 7.471132673 7.734592608 7.32413382 7.414212253 7.282990101 7.924559475 82940269 phenol_oxidase Carbon cycling Carbon degradation Lignin Pedomicrobium sp. ACM 3067 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Pedomicrobium; 7.419896904 7.381222862 7.850365003 21109534 nmoA Organic Remediation Aromatics Nitoaromatics Xanthomonas axonopodis pv. citri str. 306 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas axonopodis; 7.419660383 7.111920724 257473218 ahpC Stress Oxygen stress Atopobium parvulum DSM 20469 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Atopobium;species:Atopobium parvulum; 7.178460483 7.271438209 7.245138438 7.216205858 7.56849379 83844974 CopA Metal Resistance Copper Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 7.30292517 7.521285654 42475478 bphC Organic Remediation Aromatics Polycyclic aromatics Rhodococcus rhodochrous superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7.251997199 7.091472188 150036066 sox Sulphur Sulphur oxidation Thiocapsa roseopersicina superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa; 7.572771932 7.940301075 7.09330642 7.071624571 7.881249043 7.548474298 8.1182267 260778371 ureC Nitrogen Ammonification Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 7.303598135 7.601593244 7.088343281 7.528661712 7.023190325 7.284207175 106635938 catechol_B Organic Remediation Aromatics Other aromatics Rhizobium sp. ZJF08 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 8.195816263 8.099500891 8.048094703 7.765203298 8.017237612 7.927063602 7.933904823 8.740408427 269129875 SMR_antibiotics Antibiotic resistance transporter Slackia exigua ATCC 700122 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Slackia;species:Slackia exigua; 7.442756559 7.596037535 7.421450346 7.156976625 7.136317666 7.490779079 116699015 sigma_70 Stress Sigma factors Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 7.888379809 7.7585435 223552193 TerC Metal Resistance Tellurium Tolumonas auensis DSM 9187 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Tolumonas;species:Tolumonas auensis; 7.916193283 7.309700612 7.186931007 7.186704863 7.280751528 7.172753484 91975498 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.361490707 7.588482649 7.489881235 7.126217527 7.53165098 7.010196125 7.320246426 114776637 CopA Metal Resistance Copper Mariprofundus ferrooxydans PV-1 6.981591676 7.299241639 120595801 pilin virulence pilin Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 6.815445342 6.7166714 4160661 pcaG Organic Remediation Aromatics Other aromatics Streptomyces sp. 2065 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.027208527 7.896265074 7.520365881 7.723460305 8.079183513 60476328 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.950391105 7.817226924 7.667579908 7.631798975 7.920797305 7.95503514 8.257038543 7.971832376 113927069 aclB Carbon cycling Carbon fixation Persephonella sp. CIR297H superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Hydrogenothermaceae;genus:Persephonella; 7.064356927 7.113386409 113905150 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 7.984441596 7.928232584 7.704627427 8.061600354 7.675453315 7.687864371 242819619 MFS_antibiotic Antibiotic resistance transporter Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 7.143281029 7.386058611 194538575 pimF Organic Remediation Aromatics Aromatic carboxylic acid Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.043527288 7.000613019 145297976 proX Stress Osmotic stress Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 7.471130459 7.385825521 7.356178808 7.576435639 7.427152555 7.383984121 7.386033111 88766405 nitA Organic Remediation Aromatics Other aromatics Metarhizium anisopliae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Clavicipitaceae;genus:Metarhizium; 8.337550482 7.870140945 7.747680844 8.165706765 7.941209749 8.007878928 7.599999472 7.731818707 171087928 AceA Carbon cycling Carbon degradation others Geobacillus sp. WCH70 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.079440217 7.27633148 7.109519693 7.794612764 7.073351822 7.11322085 7.32350111 16329290 amyA Carbon cycling Carbon degradation Starch Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 6.881400822 7.12716794 110224996 gyrB other category gyrB Streptococcus parasanguinis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 7.260548893 7.204088367 6.980231304 6.719785608 7.066025561 7.055294644 7.207571055 154351574 SMR_antibiotics Antibiotic resistance transporter Bacillus amyloliquefaciens FZB42 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 7.330151172 7.148543062 7.209937758 6.912775371 168990410 TerD Metal Resistance Tellurium Lysinibacillus sphaericus C3-41 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Lysinibacillus;species:Lysinibacillus sphaericus; 7.683398353 7.464723398 6.991282414 7.522637238 37726795 dsrB Sulphur sulfite reductase Desulfobacca acetoxidans 6.834123122 7.149178718 91795589 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 7.354378141 7.435567239 6.990933466 7.29663064 7.554889148 7.156855497 7.078542926 7.075844297 134265838 narG Nitrogen Denitrification Geobacillus thermodenitrificans NG80-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermodenitrificans; 7.554323547 7.359976846 192823874 helicase_family_4 Bacteria phage REPLICATION Mycobacterium phage DD5 order:Caudovirales;family:Siphoviridae; 7.420612682 7.251617594 7.296940908 6.915300457 7.353723065 7.60081211 7.630367589 227077395 pcc Carbon cycling Carbon fixation Corynebacterium accolens ATCC 49725 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium accolens; 7.251625479 7.244395304 37791159 phenol_oxidase Carbon cycling Carbon degradation Lignin Volvariella volvacea superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pluteaceae;genus:Volvariella; 7.570498683 7.313238476 7.378381856 7.379495798 167590815 iro virulence Burkholderia ubonensis Bu superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ubonensis; 6.962261431 7.490588289 7.708592341 7.723096335 7.2117989 7.475812273 229364542 MFS_antibiotic Antibiotic resistance transporter Pseudomonas fluorescens SBW25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.191762406 7.574378926 7.705597651 167750608 CopA Metal Resistance Copper Eubacterium siraeum DSM 15702 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium siraeum; 7.275134357 7.766028826 7.280546359 7.457246693 20502035 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.149943885 7.509972442 7.342117766 7.568280556 86557227 cydB Stress Oxygen limitation Synechococcus sp. JA-2-3B'a(2-13) superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.781102271 7.67143886 127512145 sigma_38 Stress Sigma factors Shewanella loihica PV-4 7.805703878 7.605445905 7.011641964 7.878798697 7.828079056 7.908268053 7.631347892 7.735481183 195932588 ahpC Stress Oxygen stress Hydrogenobaculum sp. Y04AAS1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenobaculum; 6.748879404 7.37658196 126208908 toxin virulence toxin Actinobacillus pleuropneumoniae L20 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus pleuropneumoniae; 7.056428835 7.317636809 195945073 silC Metal Resistance Silver Burkholderia cenocepacia J2315 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 7.595435513 7.385807352 7.229005538 7.753737182 558708 glucoamylase Carbon cycling Carbon degradation Starch Saccharomyces cerevisiae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Saccharomyces; 7.061270112 7.047725261 56130692 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 7.489806763 7.576983879 7.27241637 7.417445437 7.764837197 7.806060509 7.484984081 60418579 rubisco Carbon cycling Carbon fixation uncultured marine bacterium superkingdom:Bacteria; 7.043693892 7.431047314 7.129569959 6.957416863 7.588930369 19713541 hrcA Stress Heat shock Fusobacterium nucleatum subsp. nucleatum ATCC 25586 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteria;order:Fusobacteriales;family:Fusobacteriaceae;genus:Fusobacterium;species:Fusobacterium nucleatum; 6.673242478 6.817204331 6.754884779 7.161046934 115516582 bco Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.551565353 7.374235115 7.314152363 7.734192309 7.534266175 7.721011983 7.482193381 218710915 sigma_32 Stress Sigma factors Vibrio splendidus LGP32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 7.066793263 7.102726632 77812438 nirS Nitrogen Denitrification bacterium D11 superkingdom:Bacteria; 7.463188352 7.354645802 219868144 pstB Stress Phosphate limitation Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7.285594124 7.339956423 7.142971469 7.453274307 7.588493586 7.24242256 157408314 ureC Nitrogen Ammonification Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 7.039453401 7.22356804 163670559 CadA Metal Resistance Cadmium Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 7.054563995 7.068717455 6.910708405 7.301800312 6.876495627 6.963225893 228850785 katE Stress Oxygen stress Bacillus thuringiensis IBL 200 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus thuringiensis; 6.814681955 7.066641564 6.851634879 7.502862868 7.142110484 7.019454721 155180 acetylglucosaminidase Carbon cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 6.697074585 7.047664294 119226148 gyrB other category gyrB Nocardia brasiliensis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia; 7.922073304 7.494386262 7.258485481 7.350988803 7.792292381 7.510229085 7.061343674 6.982889553 149928542 TehB Metal Resistance Tellurium Limnobacter sp. MED105 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 7.852327535 7.234984305 7.092233178 7.129124956 7.388405348 91687271 SMR_antibiotics Antibiotic resistance transporter Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.174844119 7.241313435 158443116 ChrA Metal Resistance Chromium Faecalibacterium prausnitzii M21/2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Faecalibacterium;species:Faecalibacterium prausnitzii; 7.09757037 7.193278537 187479194 hrcA Stress Heat shock Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 7.404906768 7.367339672 7.566507833 7.467904848 7.195835425 7.549739841 164602906 glnA Stress Nitrogen limitation Clostridium bartlettii DSM 16795 6.812600923 7.027837198 70732740 CorC Metal Resistance Cobalt Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.440973631 7.486291807 6.890875101 7.306853882 7.528847967 7.084296531 7.239025045 7.219116513 91688754 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.016476365 7.240233222 6.83835853 7.019585245 7.265371214 209980176 aoxB Metal Resistance Arsenic Hydrogenobaculum sp. 3684 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenobaculum; 6.996261551 7.440572528 6.909762521 6.678458765 7.714644649 6.927455763 6.891708741 7.452269981 27544682 gyrB other category gyrB Fluoribacter dumoffii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Fluoribacter; 6.735482559 6.965038338 6.67996297 7.254019841 68348061 nmoA Organic Remediation Aromatics Nitoaromatics Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.56427898 7.417336304 7.362272876 7.641555619 90954577 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.717367027 7.850007979 7.383474499 7.885819468 8.035501978 7.831066524 7.921852978 188030588 vip virulence virulence protein Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 6.981627572 7.240642589 6.512030559 6.93580531 7.017054348 3978256 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Pseudoalteromonas sp. S9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 6.887346784 7.022589472 227510416 ara Carbon cycling Carbon degradation Hemicellulose Lactobacillus brevis subsp. gravesensis ATCC 27305 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus brevis; 7.377161259 7.505205902 69260358 pulA Carbon cycling Carbon degradation Starch Magnetococcus sp. MC-1 superkingdom:Bacteria;phylum:Proteobacteria;genus:Magnetococcus; 7.108123185 7.136557913 126096673 alkK Organic Remediation Others Actinobacillus pleuropneumoniae L20 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus pleuropneumoniae; 7.148713789 7.117852768 7.115746029 7.099831605 170701290 type_III_secretion virulence secretion Burkholderia ambifaria IOP40-10 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 7.510561972 7.449142867 157371755 ArsC Metal Resistance Arsenic Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 7.333573498 7.612621705 7.440576237 7.119065318 7.760532405 7.440913721 7.635043004 7.388067433 259907753 ppk Phosphorus Phosphorus utilization Erwinia pyrifoliae Ep1/96 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia pyrifoliae; 7.101491453 7.069953745 85710952 Mex Antibiotic resistance transporter Idiomarina baltica OS145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina baltica; 7.114507457 7.188490031 239808069 grpE Stress Heat shock Geobacillus sp. WCH70 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.334495719 7.326173981 221723988 sigma_70 Stress Sigma factors Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.579232484 7.935733578 8.255999065 7.41598077 7.554513858 7.725849324 8.199774274 125973714 trzN Organic Remediation Herbicides related compound Clostridium thermocellum ATCC 27405 7.309114638 7.128202276 6.859648748 6.982522339 148989163 pulA Carbon cycling Carbon degradation Starch Streptococcus pneumoniae SP6-BS73 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus pneumoniae; 7.510285205 7.272986238 7.231261683 7.730984073 4468787 narG Nitrogen Denitrification uncultured bacterium 6.791626673 7.063039724 46307852 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.171784832 7.13311707 36784830 cydB Stress Oxygen limitation Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 7.172292711 7.297604791 6.779088612 7.292721245 257464001 hrcA Stress Heat shock Fusobacterium sp. D12 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteria;order:Fusobacteriales;family:Fusobacteriaceae;genus:Fusobacterium; 7.262033978 7.253160971 24348366 B_lactamase_C Antibiotic resistance Beta-lactamases Shewanella oneidensis MR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella oneidensis; 7.396862252 7.401776021 7.516874927 7.822157005 7.625178111 7.333192242 7.98440564 192764370 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.811611576 8.034999526 7.928145603 8.408262806 8.512630972 8.331478227 8.572912412 260630781 pstA Stress Phosphate limitation Jonquetella anthropi E3_33 E1 7.639642201 7.583714182 7.311382941 7.201367944 7.475651347 90569650 norB Nitrogen Denitrification Pseudomonas aeruginosa superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.162379378 7.377250597 7.003235498 7.186281283 160886420 pcc Carbon cycling Carbon fixation Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 6.613089159 7.456701645 163745173 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 7.407815149 7.745015284 6.941395812 7.616367785 7.527802654 7.441186346 7.233706261 7.585398226 46307936 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.818749508 7.656351455 7.809707705 7.870393999 7.673694405 149138256 sigma_70 Stress Sigma factors Lentisphaera araneosa HTCC2155 superkingdom:Bacteria;phylum:Lentisphaerae;order:Lentisphaerales;family:Lentisphaeraceae;genus:Lentisphaera;species:Lentisphaera araneosa; 7.429075936 7.170608448 227185907 ahpC Stress Oxygen stress Lactobacillus reuteri CF48-3A superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus reuteri; 7.325078481 7.221637672 60326720 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 6.815617055 7.006282481 4514449 gyrB other category gyrB Acinetobacter sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 7.270723177 7.418470303 7.120859791 7.397248269 7.130697636 6.894396069 7.372961788 114705995 ChrA Metal Resistance Chromium Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 7.464404689 7.304340374 6.596144604 7.622412672 74419073 gyrB other category gyrB Nitrobacter winogradskyi Nb-255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 7.353263279 7.7392929 7.755580021 7.352892997 7.985098379 7.513881582 7.498448357 7.332010523 149935859 tutFDG Organic Remediation Aromatics BTEX and related aromatics Parabacteroides distasonis ATCC 8503 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides distasonis; 7.47938715 7.457357257 7.558319247 7.129343727 7.48223376 495281 mnp Carbon cycling Carbon degradation Lignin Trametes versicolor superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 7.186501583 6.838301529 6.949812852 7.551939311 70987189 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 6.88230388 7.054792367 196227357 sigma_24 Stress Sigma factors Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 7.485248993 7.225054052 7.384335866 7.509109371 7.377816109 7.333010451 7.443440441 19912113 gyrB other category gyrB Cytophaga sp. MBIC01481 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Cytophaga; 7.575725254 7.231915889 6.811525867 7.260606706 50085203 iro virulence Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 7.160415255 6.945994233 85057387 sigma_70 Stress Sigma factors Aster yellows witches'-broom phytoplasma AYWB superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Acholeplasmatales;family:Acholeplasmataceae;genus:Candidatus Phytoplasma;species:Aster yellows witches'-broom phytoplasma; 7.290434038 6.986025558 3820519 bphA Organic Remediation Aromatics Polycyclic aromatics Burkholderia sp. RP007 6.881685001 7.037180238 206742472 pstA Stress Phosphate limitation Thermodesulfovibrio yellowstonii DSM 11347 6.998158109 7.213724642 7.116278434 7.176018087 159044491 atzC Organic Remediation Herbicides related compound Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 7.867233462 7.883549897 7.230792846 7.873901317 7.925765074 7.662796789 171277954 ppx Phosphorus Phosphorus utilization Bifidobacterium dentium ATCC 27678 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium dentium; 7.058589256 7.031065347 7.262719337 7.201002875 88916675 TerC Metal Resistance Tellurium Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 7.275666042 7.337277703 7.185734891 7.231267425 266623752 pstB Stress Phosphate limitation Clostridium hathewayi DSM 13479 7.997788809 8.16588038 8.168524449 7.664307555 7.758079224 8.108858955 8.263655072 218698640 ABC_antibiotic_transporter Antibiotic resistance transporter Escherichia coli IAI39 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 7.169234333 7.251084253 7.054930232 7.188933415 7.398219737 7.334889645 7.234485019 224963204 MFS_antibiotic Antibiotic resistance transporter Erwinia pyrifoliae Ep1/96 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia pyrifoliae; 7.419527386 7.440267485 260223605 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.866070243 7.273331587 22138843 exoglucanase Carbon cycling Carbon degradation Cellulose Aspergillus oryzae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 6.846552297 6.958475277 6.708426943 7.366083857 187478408 nagI Organic Remediation Aromatics Aromatic carboxylic acid Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 8.1694845 7.976600506 7.739565492 8.58993312 8.031695458 8.013624216 7.8137568 8.308154059 213954405 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Capnocytophaga sputigena Capno superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga sputigena; 7.21615997 7.458428333 256038310 pstA Stress Phosphate limitation Chitinophaga pinensis DSM 2588 7.432371226 7.717426927 7.292021175 7.480364879 8.143973981 7.338822584 7.577673896 7.59679765 85823695 cbdA Organic Remediation Aromatics Chlorinated aromatics Roseobacter sp. MED193 7.596681866 8.024506593 7.675802507 7.571734547 7.804461301 37651637 T4_type_portal_protein Bacteria phage REPLICATION Aeromonas phage 44RR2.8t order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.590016728 7.163051537 73534317 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.71847678 7.978189871 7.456060549 8.110287396 7.759448659 7.672652556 7.775958684 8.021818506 161786104 sigma_24 Stress Sigma factors Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 7.579275461 7.614459251 7.740991335 7.86219982 8.006136552 7.868390701 269993806 srt virulence surface protein Streptococcus downei superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 7.247741125 7.262695859 154000099 nifH Nitrogen Nitrogen fixation Candidatus Methanoregula boonei 6A8 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;genus:Candidatus Methanoregula;species:Candidatus Methanoregula boonei; 7.703893385 7.639964391 7.429393396 7.806189051 7.571994551 7.303304849 189424755 ahpC Stress Oxygen stress Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 7.194404941 7.297716983 6.841406102 7.166936161 7.482345318 224588307 glnA Stress Nitrogen limitation uncultured bacterium BLR7 7.280590489 7.296238173 6.904485292 7.298379071 7.448300569 7.778881035 7.588761032 7.850680859 112462209 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.436982251 7.130916829 7.464153877 7.256966397 7.845660732 148262182 sigma_24 Stress Sigma factors Geobacter uraniireducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 7.587649983 7.674128705 7.445161307 8.115055954 8.027290584 7.874041504 7.70664302 42522374 katE Stress Oxygen stress Bdellovibrio bacteriovorus HD100 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 7.24579824 7.328336662 7.113349721 7.18618864 7.596517186 116249778 gyrB other category gyrB Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.364833832 7.490187607 7.569317476 7.995059444 7.709853377 255257424 gyrB other category gyrB Thermoanaerobacterium thermosaccharolyticum DSM 571 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Thermoanaerobacterium;species:Thermoanaerobacterium thermosaccharolyticum; 6.938554002 7.140513843 6.877255146 7.338605322 106886509 ureC Nitrogen Ammonification Clostridium phytofermentans ISDg superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium phytofermentans; 7.04842252 7.460438537 6.858002222 6.696260202 7.422304112 21228430 mer Metal Resistance Mercury Methanosarcina mazei Go1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina mazei; 7.162444411 6.955716847 211959206 fnr Stress Oxygen stress Pseudovibrio sp. JE062 7.325492994 7.370629973 71833792 gyrB other category gyrB Helicobacter mustelae superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter; 7.014992998 7.184924217 193245122 mcrA Carbon cycling Methane Methane production uncultured euryarchaeote superkingdom:Archaea;phylum:Euryarchaeota; 7.099519366 7.463381915 4589729 B_lactamase_A Antibiotic resistance Beta-lactamases Enterobacter cloacae 7.367296539 7.39612799 110285553 fnr Stress Oxygen stress Mesorhizobium sp. BNC1 7.196481639 7.189827448 154367887 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Pandoraea pnomenusa superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Pandoraea; 8.114393906 7.657232159 70983949 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 7.186152846 7.202401118 110621173 ahpC Stress Oxygen stress uncultured methanogenic archaeon RC-I superkingdom:Archaea;phylum:Euryarchaeota; 7.101415701 7.091589994 7.237506342 7.516998413 50284929 endochitinase Carbon cycling Carbon degradation Chitin Candida glabrata CBS138 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Nakaseomyces;species:Candida glabrata; 7.01715314 7.133083791 116096221 ppx Phosphorus Phosphorus utilization Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc mesenteroides; 6.838904712 7.475557067 86284236 trzN Organic Remediation Herbicides related compound Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.40825491 7.333051352 6.852796951 7.674388451 7.349404287 7.397429097 7.432136016 7.52731957 26989303 atzB Organic Remediation Herbicides related compound Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.374213154 7.293212986 7.777919105 119654847 amoA Nitrogen Nitrification superkingdom:Bacteria; 7.152262767 7.034825938 7.004190962 7.568881749 7.302245863 7.245014762 7.38522409 121307626 phoA Stress Phosphate limitation Thermosinus carboxydivorans Nor1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Thermosinus;species:Thermosinus carboxydivorans; 7.018693014 7.215071473 6.696764492 7.554102309 268615108 cap virulence capsule Sebaldella termitidis ATCC 33386 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteria;order:Fusobacteriales;family:Fusobacteriaceae;genus:Sebaldella;species:Sebaldella termitidis; 6.934751675 7.276438292 53803124 rubisco Carbon cycling Carbon fixation Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 7.524349473 7.361309514 7.147060237 7.756716419 7.915213801 7.669014127 7.281383292 7.447028286 238927280 fnr Stress Oxygen stress Selenomonas flueggei ATCC 43531 7.054783981 7.336007804 6.927607706 6.982047279 66574448 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Xanthomonas campestris pv. campestris str. 8004 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 7.038645127 7.246702042 7.442143995 7.204854581 7.897815817 7.049784544 7.408241947 7.246551773 124516372 acpA_III Bioleaching other category Leptospirillum sp. Group II UBA 6.898158313 7.252134457 262382899 sigma_24 Stress Sigma factors Bacteroides sp. 2_1_33B superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 7.630461247 7.213021589 7.181100872 7.505673847 151281373 atzA Organic Remediation Herbicides related compound Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 7.326118998 7.1602223 7.740378825 7.566239096 7.459297227 7.876962623 7.650087138 219864377 pstB Stress Phosphate limitation Cyanothece sp. PCC 7425 7.174394326 7.069408808 223938104 sigma_24 Stress Sigma factors bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 7.438208896 7.883106501 8.209646421 7.534171985 8.246682718 7.846316081 7.853969068 8.169847269 219541411 sigma_70 Stress Sigma factors Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 6.90797342 7.480319977 91681290 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 6.805604065 7.112473169 3845550 pheA Organic Remediation Aromatics Other aromatics Comamonas testosteroni superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 7.382159838 7.241469566 7.125305984 7.819974661 68055693 mer Metal Resistance Mercury Exiguobacterium sibiricum 255-15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 7.094457344 6.995900726 6.67682371 7.200840761 256420959 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Chitinophaga pinensis DSM 2588 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 7.253834134 6.99068962 156231641 fnr Stress Oxygen stress Roseiflexus castenholzii DSM 13941 7.30282282 6.94175148 7.123416247 7.073757255 116226347 sigma_24 Stress Sigma factors Candidatus Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 7.331119892 7.380224627 224463990 sigma_24 Stress Sigma factors Methylophaga thiooxidans DMS010 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Methylophaga;species:Methylophaga thiooxidans; 7.28677441 7.231027596 19909663 gyrB other category gyrB Erythrobacter sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 7.130425206 7.277933913 46917292 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.146121458 6.950421613 62003583 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.536712609 7.334764318 7.62460373 7.509776281 7.57716267 7.429729226 7.232532037 145589012 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Polynucleobacter sp. QLW-P1DMWA-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 7.10360298 7.137140905 129279118 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.492981912 7.363865291 224962982 arcA Stress Oxygen limitation Erwinia pyrifoliae Ep1/96 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia pyrifoliae; 7.058368422 7.43096441 7.403327861 7.623803535 7.12221511 6.818896587 58270196 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Cryptococcus neoformans var. neoformans JEC21 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Tremellomycetes;order:Tremellales;family:Tremellaceae;genus:Filobasidiella;species:Filobasidiella neoformans; 6.894560266 6.824276534 256715099 phoB Stress Phosphate limitation Lactobacillus coleohominis 101-4-CHN superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus coleohominis; 7.344855341 7.134292432 7.672624837 7.887991335 85710896 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Idiomarina baltica OS145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina baltica; 7.548961538 7.548556398 7.475304929 7.206970332 71038802 sigma_70 Stress Sigma factors Psychrobacter arcticus 273-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter arcticus; 7.001631459 6.991290954 253999591 hrcA Stress Heat shock Methylovorus sp. SIP3-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylovorus; 7.519672612 7.260028526 7.392235645 7.50060995 7.668362817 7.121269846 7.440441056 163759176 ppx Phosphorus Phosphorus utilization Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 7.301767203 7.790155635 7.446721861 7.080936239 126236586 ophC Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.774501381 7.322904073 7.910717192 7.318369139 7.3238051 7.248635975 151562437 ZitB Metal Resistance Zinc Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 7.517616304 7.533004955 7.162585465 7.65800261 7.714460443 7.702585281 7.622888393 7.332237966 227313318 hly virulence hemolysin Denitrovibrio acetiphilus DSM 12809 superkingdom:Bacteria;phylum:Deferribacteres;class:Deferribacteres;order:Deferribacterales;family:Deferribacteraceae;genus:Denitrovibrio;species:Denitrovibrio acetiphilus; 6.940426248 6.96893622 227550034 sigma_24 Stress Sigma factors Corynebacterium lipophiloflavum DSM 44291 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium lipophiloflavum; 7.247168516 7.3099038 260654507 phoB Stress Phosphate limitation Jonquetella anthropi E3_33 E1 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Jonquetella;species:Jonquetella anthropi; 6.974032256 7.405542083 7.191293265 7.535649379 121051107 gyrB other category gyrB Neisseria meningitidis Z2491 7.351526207 7.157005711 13815968 cytochrome_b Bioleaching Electron transport Sulfolobus solfataricus P2 7.402765733 7.418215698 7.38554879 7.289881413 7.844350891 7.347548578 7.342535306 255705280 DNA_polymerase_type_I Bacteria phage REPLICATION Synechococcus phage S-RSM4 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.296396437 7.334997698 37519951 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 7.099034404 7.1571212 6.790126504 6.8250166 7.736238499 7.330745977 7.170903659 87289972 sigma_70 Stress Sigma factors Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 7.367300432 7.429288538 7.321606997 7.348961637 7.487682578 7.662026029 254805590 pap virulence adhesin Neisseria meningitidis alpha14 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria meningitidis; 7.012340631 6.895351239 95931471 ahpC Stress Oxygen stress Desulfuromonas acetoxidans DSM 684 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Desulfuromonadaceae;genus:Desulfuromonas;species:Desulfuromonas acetoxidans; 7.160111075 7.075478266 221194991 srt virulence surface protein Atopobium rimae ATCC 49626 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Atopobium;species:Atopobium rimae; 7.150663813 7.803586802 7.641501122 7.328598241 8.12158897 7.4805186 7.437292719 7.754197668 161381991 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 7.332979539 7.381268536 7.387714905 7.332202898 7.660778817 134052607 atzA Organic Remediation Herbicides related compound Desulfotomaculum reducens MI-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum reducens; 7.30678112 7.399084712 7.417600932 7.33582595 149820436 pcc Carbon cycling Carbon fixation Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 7.367886872 8.188023606 7.857962602 7.827803206 7.453733738 7.928677648 28853990 katE Stress Oxygen stress Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 6.784916264 7.159356155 6.764102743 7.247168866 7.142496836 7.427324498 157960216 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 7.225548598 7.197083418 113207314 phenol_oxidase Carbon cycling Carbon degradation Lignin Phlebia radiata superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phlebia; 6.694912786 6.818796361 6.761049709 7.159893494 106886878 pulA Carbon cycling Carbon degradation Starch Clostridium phytofermentans ISDg superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium phytofermentans; 7.206007934 7.305909243 7.201234564 7.073178003 7.427570646 7.405073398 7.747038598 34102230 ChrA Metal Resistance Chromium Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 7.058444575 7.24155009 6.956195472 7.478233489 125717249 cap virulence capsule Streptococcus sanguinis SK36 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus sanguinis; 7.414806658 7.274763397 7.277389605 7.158447034 7.45680267 7.284853822 7.477222943 150034875 mnp Carbon cycling Carbon degradation Lignin Phlebia sp. b19 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phlebia; 7.244347398 7.835740721 7.382660413 7.043340761 8.20016467 7.391365111 7.090486637 7.145130383 60494037 amyA Carbon cycling Carbon degradation Starch Bacteroides fragilis NCTC 9343 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 7.362592722 7.579409056 73534357 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.552639582 7.679140025 8.010636012 7.171900121 8.255023272 7.377640566 7.689756805 209486111 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.58429157 7.518019436 7.019191401 7.396183005 7.255474919 7.184781108 7.572966631 254046730 SMR_antibiotics Antibiotic resistance transporter Lactobacillus plantarum JDM1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus plantarum; 6.748349487 7.319590581 7.567842774 146280848 cytochrome Energy process Energy process Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 7.763353382 7.745794255 7.604113441 7.098315414 7.773611166 58582047 nbaC Organic Remediation Aromatics Nitoaromatics Xanthomonas oryzae pv. oryzae KACC10331 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 7.432354984 7.954271109 8.057068199 7.468927236 8.194509286 7.459461934 8.093010638 8.270444881 68242366 silC Metal Resistance Silver Pelodictyon phaeoclathratiforme BU-1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 7.448188251 7.726778652 7.744001275 7.326939012 7.576289299 7.666304493 91688586 nitA Organic Remediation Aromatics Other aromatics Burkholderia xenovorans LB400 7.213523175 7.414173755 7.30673477 7.550208695 7.325683396 7.438386329 7.749650649 238837008 mcrA Carbon cycling Methane Methane production uncultured euryarchaeote superkingdom:Archaea;phylum:Euryarchaeota; 7.457893817 7.69374201 7.64444505 7.079449219 7.908998409 7.239759758 7.799082292 18369655 bco Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus evansii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 7.213044472 6.918350226 7.259966924 7.160138652 156971824 phytase Phosphorus Phosphorus utilization Yersinia rohdei superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia; 7.584570173 7.545862262 218714235 BpH Organic Remediation Aromatics Aromatic carboxylic acid Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 7.425532563 7.352872922 82410280 pstC Stress Phosphate limitation Nitrosospira multiformis ATCC 25196 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira;species:Nitrosospira multiformis; 7.357903223 7.594170073 7.691244109 7.555553455 7.844125469 7.529087236 68164670 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.183415255 7.577562337 7.276727913 7.609992072 7.767552927 7.409252994 7.448823275 7.563007596 198247801 pstB Stress Phosphate limitation Acidithiobacillus ferrooxidans ATCC 53993 6.932086031 7.173496837 7.759937791 6.892649036 86742358 TerZ Metal Resistance Tellurium Frankia sp. CcI3 7.221900962 7.359067103 7.274775958 7.653642632 118738622 scnABC Organic Remediation Others Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 7.174529946 7.205845785 116204275 nagG Organic Remediation Aromatics Aromatic carboxylic acid Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 7.80313813 7.475922079 7.378726677 7.970468701 7.723544308 7.548900775 7.463948746 7.565589056 146303616 tyrosine_protein_kinase_EPS Bioleaching EPS Metallosphaera sedula DSM 5348 7.20462843 7.682034677 7.129302255 7.288371686 6.875913879 7.396128922 196189379 Al Metal Resistance Aluminum Synechococcus sp. PCC 7335 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.520871167 7.101144907 6.651387766 7.305289336 25990186 endoglucanase Carbon cycling Carbon degradation Cellulose Aspergillus aculeatus superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 7.010748548 7.218459596 6.709353603 7.349173195 7.189077736 7.078223968 151562932 PobA Organic Remediation Aromatics Aromatic carboxylic acid Ochrobactrum anthropi ATCC 49188 6.942832543 7.305412121 6.62536289 7.688299921 7.0780054 7.067858921 26989880 benAB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.606029734 7.695877804 7.57247656 7.219989081 7.290679448 7.144253874 258537275 amoA Nitrogen Nitrification superkingdom:Archaea; 7.571361134 7.594864583 7.231119665 7.860377817 7.74790766 7.675797018 7.349140545 7.725980306 145622043 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Petrotoga mobilis SJ95 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Petrotoga;species:Petrotoga mobilis; 7.060115116 7.02040324 170100905 nagG Organic Remediation Aromatics Aromatic carboxylic acid Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 6.874681123 7.205845823 7.076969801 7.361528149 192824042 DNA_polymerase_type_I Bacteria phage REPLICATION Mycobacterium phage KBG order:Caudovirales;family:Siphoviridae; 6.923190887 7.543437282 119476908 atzA Organic Remediation Herbicides related compound marine gamma proteobacterium HTCC2143 7.198391894 7.454074485 7.005665944 7.425559128 7.421360046 7.233765621 7.173184476 12720946 fnr Stress Oxygen stress Pasteurella multocida subsp. multocida str. Pm70 7.044442505 7.2545779 7.061123456 7.351001946 6.817505308 7.202337312 119373040 CopA Metal Resistance Copper Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 7.184518591 7.207129446 30387465 ssb Bacteria phage REPLICATION Yersinia pestis phage phiA1122 order:Caudovirales;family:Podoviridae;genus:T7-like viruses; 7.244343281 7.651313096 7.573883177 7.636150612 7.996553738 7.828752336 7.817513412 7.894509229 94501520 sigma_24 Stress Sigma factors Oceanobacter sp. RED65 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Bermanella; 6.977023197 6.878151708 91710881 silC Metal Resistance Silver Methylobacillus flagellatus KT superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 7.396622777 7.203291732 7.148864221 7.51086779 7.30038108 7.372263923 147886252 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 7.083415931 7.203667032 7.61022976 7.617502844 7.514995151 7.543194571 148793322 sigma_70 Stress Sigma factors Photobacterium indicum superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium; 7.235169703 7.351112514 7.249558501 6.84965871 27529179 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7.270162468 7.500908673 7.791416548 7.723775235 268324466 pstB Stress Phosphate limitation uncultured archaeon 7.161023337 7.230489504 7.095132559 6.896176113 154498821 dsrB Sulphur sulfite reductase Bacteroides capillosus ATCC 29799 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides capillosus; 7.281100182 7.27020142 6.990043857 7.178045372 7.455480047 7.331409152 6.927937518 7.250994832 124516698 Fe_S_oxidoreductase Bioleaching Electron transport Leptospirillum sp. Group II UBA 6.797091023 7.042710549 6.693055113 7.279777215 51244957 APS_AprA Sulphur adenylylsulfate reductase Desulfotalea psychrophila LSv54 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfotalea;species:Desulfotalea psychrophila; 7.241549071 6.954583018 6.916651419 7.353306797 118590166 oxyR Stress Oxygen stress Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 7.835728999 7.687667678 8.036472799 7.631622953 7.463406838 7.633471827 7.85541365 91778989 nagG Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 6.987549918 7.239164551 7.586863766 6.971747209 7.221676029 238758006 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Yersinia aldovae ATCC 35236 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia aldovae; 7.205877353 7.15086476 151302266 AprA Sulphur adenylylsulfate reductase Desulforegula conservatrix 7.171064687 7.152377517 118165762 fnr Stress Oxygen stress Mycobacterium avium 104 7.883530758 7.653573235 7.776405027 7.43556077 7.619808702 7.539801037 148255762 tfdA Organic Remediation Aromatics Chlorinated aromatics Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.73070983 7.923915501 7.48143204 7.705894469 13358814 gyrB other category gyrB Chitinophaga pinensis superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;genus:Chitinophaga; 7.55689942 7.624143977 7.589203869 7.418917656 7.942323694 7.831064418 7.534975605 7.854377639 212638725 pstB Stress Phosphate limitation Anoxybacillus flavithermus WK1 7.318472097 7.471869652 7.26319292 7.001349138 7.221948797 7.482983386 91189187 amyA Carbon cycling Carbon degradation Starch Vibrio alginolyticus 12G01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 6.568606235 7.36672157 260063953 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.476970912 7.592051351 7.427408176 7.231302462 7.457511914 144906053 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6.593370241 6.779325736 151423810 glnA Stress Nitrogen limitation Sulfurovum sp. NBC37-1 7.102665001 7.07759343 27349261 sox Sulphur Sulphur oxidation Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.088557576 7.028453344 258647477 nrfA Nitrogen Dissimilatory N reduction Prevotella tannerae ATCC 51259 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella tannerae; 7.050389502 7.326741436 157961630 cytochrome Energy process Energy process Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 7.301584483 7.303102437 7.776386091 7.322999933 7.731399983 7.92154972 7.670618858 7.924018346 119406206 BpH Organic Remediation Aromatics Aromatic carboxylic acid Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 7.603545309 7.954828787 225213315 Tet Antibiotic resistance other Roseburia inulinivorans DSM 16841 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia inulinivorans; 7.567927544 8.181672562 8.199674601 8.149494691 8.224793643 39648372 alkK Organic Remediation Others Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.483759375 7.051513506 7.307187002 7.148032479 7.499668941 7.06850404 7.379231968 7.370052953 15834725 ZntA Metal Resistance Zinc Chlamydia muridarum Nigg superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Chlamydiaceae;genus:Chlamydia;species:Chlamydia muridarum; 7.162173345 7.376990923 6.678589785 7.366041029 7.039529678 6.736462383 219678179 pimF Organic Remediation Aromatics Aromatic carboxylic acid gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.997492544 7.939931045 7.446115862 7.645106295 7.730261827 8.049891012 163735977 glnA Stress Nitrogen limitation Roseobacter litoralis Och 149 7.026596074 7.139545301 7.481089173 91780772 fnr Stress Oxygen stress Burkholderia xenovorans LB400 7.116101534 7.337317835 161385285 B_lactamase_A Antibiotic resistance Beta-lactamases Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 6.817308879 7.492342575 7.200426999 7.600558464 7.314283233 7.364401634 194541255 napA Nitrogen Dissimilatory N reduction Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 6.879126707 7.021756255 85707335 tftH Organic Remediation Aromatics Chlorinated aromatics Roseovarius sp. 217 7.582401916 7.430807601 184200735 glnA Stress Nitrogen limitation Kocuria rhizophila DC2201 8.152894453 7.984410486 7.666789685 7.863373359 8.036149808 8.407036468 7.922007677 251854487 iro virulence Corynebacterium matruchotii ATCC 14266 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium matruchotii; 7.014348779 7.321384731 7.48405342 7.026020102 156057945 ahpC Stress Oxygen stress Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 7.909840716 7.848065948 8.140491178 7.375869143 7.668702427 7.604100438 7.678366232 125996457 TehB Metal Resistance Tellurium Shewanella baltica OS155 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 6.603192184 7.390656093 120600371 katE Stress Oxygen stress Shewanella sp. W3-18-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 7.089215362 7.127374144 49610894 bphF1 Organic Remediation Aromatics Polycyclic aromatics Erwinia carotovora subsp. atroseptica SCRI1043 7.900635265 7.556036192 7.764265663 8.075963107 149747287 vip virulence virulence protein Vibrio parahaemolyticus AQ3810 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.361507474 6.9914231 164688099 sigma_70 Stress Sigma factors Clostridium bartlettii DSM 16795 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bartlettii; 6.961536834 7.17010611 71158127 CopA Metal Resistance Copper Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 7.958584257 8.486522376 21648257 obgE Stress Radiation stress Chlorobium tepidum TLS superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 7.39386884 7.267816286 7.781318063 6.909518427 7.831449894 7.299543974 7.217741268 7.426874321 85059771 sigma_24 Stress Sigma factors Sodalis glossinidius str. 'morsitans' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Sodalis;species:Sodalis glossinidius; 7.064266093 7.223725885 7.033606552 7.77436437 6.971002081 6.969427552 7.36767829 50426597 CopA Metal Resistance Copper Debaryomyces hansenii CBS767 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Debaryomyces;species:Debaryomyces hansenii; 7.263257481 6.976408559 91782301 phtA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.684469847 7.849282553 7.649034146 7.505645515 7.869915061 7.759740258 8.317102086 157408517 nifH Nitrogen Nitrogen fixation Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 7.416644114 7.419967962 147886134 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 6.989819291 7.410284432 118073859 pcc Carbon cycling Carbon fixation Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 7.15824601 7.245828627 159890375 hly virulence hemolysin Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 7.066304045 7.135065245 6.751648563 7.266973997 125717721 gyrB other category gyrB Streptococcus sanguinis SK36 7.156325942 7.138209176 109698929 pcc Carbon cycling Carbon fixation Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 7.795954061 7.575735133 7.391089001 7.472259007 7.773876279 146278761 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 7.087719215 7.227681447 6.99070904 6.850242874 7.4718448 7.060763855 6.890520856 7.523080336 163855695 mdlD Organic Remediation Aromatics Other aromatics Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 7.623558371 7.448879656 7.438299724 7.401116332 7.619631743 42518996 obgE Stress Radiation stress Lactobacillus johnsonii NCC 533 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus johnsonii; 6.850001152 7.578641405 76259979 TerC Metal Resistance Tellurium Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 6.873112548 7.184629172 7.4782546 7.44627018 251815989 Tet Antibiotic resistance other Streptococcus suis SC84 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus suis; 7.133635397 7.041118792 6.730852986 7.499831207 84042989 Catechol Organic Remediation Aromatics Other aromatics uncultured bacterium 7.198657087 7.261995205 7.243893296 7.088708876 7.141591964 7.27734725 260938350 pstA Stress Phosphate limitation Vibrio orientalis CIP 102891 7.541163525 7.318596002 7.438919384 7.55116751 46139359 pheA Organic Remediation Aromatics Other aromatics Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 7.675263514 7.232848286 89512418 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.055606465 6.971002503 6.863516747 6.812663216 75908695 tfdA Organic Remediation Aromatics Chlorinated aromatics Anabaena variabilis ATCC 29413 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena variabilis; 7.084851219 7.119247623 6.962353006 6.950812566 7.356927906 163753715 ArsC Metal Resistance Arsenic Kordia algicida OT-1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Kordia;species:Kordia algicida; 7.065157763 7.056427624 84778325 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.283868918 7.179355207 194682550 fnr Stress Oxygen stress Proteus mirabilis HI4320 6.562691414 6.762657263 238023012 grpE Stress Heat shock Kingella oralis ATCC 51147 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Kingella;species:Kingella oralis; 6.887425671 7.590153942 7.708945002 7.269929116 8.263271867 7.050342649 6.976266549 7.267347559 196191649 sigma_24 Stress Sigma factors Synechococcus sp. PCC 7335 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.15215868 7.413059629 7.477207602 6.973546399 113932021 nitA Organic Remediation Aromatics Other aromatics Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 7.910010438 7.80776804 239517815 ara Carbon cycling Carbon degradation Hemicellulose Clostridiales bacterium 1_7_47_FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales; 7.036101116 6.966625363 49613340 arcA Stress Oxygen limitation Pectobacterium atrosepticum SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 7.82675384 7.830546716 7.896577666 7.965488662 7.865806514 208010686 sigma_38 Stress Sigma factors Aliivibrio salmonicida LFI1238 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Aliivibrio salmonicida; 6.907886496 6.833264889 169760366 cytochrome Energy process Energy process Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.687212365 7.470289106 7.5452582 7.978431921 7.835565241 7.971397442 7.654319029 7.901543096 167748774 ChrA Metal Resistance Chromium Anaerostipes caccae DSM 14662 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Anaerostipes;species:Anaerostipes caccae; 6.924892201 6.834025628 149824876 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Limnobacter sp. MED105 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 7.318450842 7.233178868 7.080175784 6.854344892 7.704510564 7.150594865 7.060293463 7.21927084 148838996 tutFDG Organic Remediation Aromatics BTEX and related aromatics Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 7.13411432 7.09832461 7.474351218 251782469 pstB Stress Phosphate limitation Streptococcus dysgalactiae subsp. equisimilis GGS_124 6.959520053 6.948564364 171700799 glnA Stress Nitrogen limitation Cyanothece sp. ATCC 51142 7.289307973 7.225189565 7.249431487 6.903923972 229740677 ahpC Stress Oxygen stress Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 7.816588884 7.633270743 7.410569339 7.578669591 7.339201895 7.879323711 7.602741309 126639989 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 7.22161764 7.368984741 7.467601691 7.358527886 7.390727193 114540727 pulA Carbon cycling Carbon degradation Starch Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.708281315 7.703717441 55232170 atzA Organic Remediation Herbicides related compound Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 7.504659253 7.707010232 7.99395187 7.639602814 7.71256589 7.943259611 78697852 rubisco Carbon cycling Carbon fixation Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 6.790786554 7.079211361 7.470071317 7.089902979 7.132148032 7.554332974 14025037 nmoA Organic Remediation Aromatics Nitoaromatics Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 7.359038416 7.569615524 7.572313974 7.077735351 7.386261406 7.606457219 85817095 ahpC Stress Oxygen stress Dokdonia donghaensis MED134 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Dokdonia;species:Dokdonia donghaensis; 7.08729715 7.113123001 6.546775271 7.328982106 6.824220821 7.268905737 255274113 pstB Stress Phosphate limitation Hyphomicrobium denitrificans ATCC 51888 7.083272601 7.000270295 160902490 obgE Stress Radiation stress Petrotoga mobilis SJ95 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Petrotoga;species:Petrotoga mobilis; 7.353990586 6.977374464 197625625 ureC Nitrogen Ammonification Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 7.532521167 7.79064112 7.858386257 7.358002933 7.878577048 7.311024782 7.4007605 7.616139762 67526223 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.153227482 7.399984121 6.937642783 7.231041894 92113459 narI Stress Oxygen limitation Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 7.432565397 7.151626277 7.566433068 7.577303383 7.56683661 7.456938356 7.108169505 152979669 Al Metal Resistance Aluminum Actinobacillus succinogenes 130Z superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus succinogenes; 7.042833041 7.059877062 59718007 CopA Metal Resistance Copper Neisseria gonorrhoeae FA 1090 7.485404069 7.416740629 7.445157016 7.492793594 7.504131488 7.324142663 7.330432929 219549811 gyrB other category gyrB Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.170914746 7.728706242 87280994 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.259664033 7.714848678 7.281978001 7.125380666 7.753268637 7.278410366 6.987784513 7.575993909 94313555 tfdA Organic Remediation Aromatics Chlorinated aromatics Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 7.765320375 7.956633358 8.137810446 8.228228797 8.035969665 8.131846133 8.039748165 86139391 ahpC Stress Oxygen stress Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.13959463 7.243291228 7.386718585 7.340513277 7.009841213 7.272398953 7.491874722 116734644 gyrB other category gyrB Ferrimonas sp. P2S11 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Ferrimonadaceae;genus:Ferrimonas; 6.989011984 7.437900048 73534961 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.092905911 7.164516443 6.721481696 7.348563436 51474010 obgE Stress Radiation stress Rickettsia typhi str. Wilmington superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales;family:Rickettsiaceae;genus:Rickettsia;species:Rickettsia typhi; 8.084758051 7.52674455 7.155971884 7.530695615 119949509 glnA Stress Nitrogen limitation Arthrobacter aurescens TC1 7.593238945 7.329993963 7.827067204 7.592181285 7.906374427 7.677972389 7.536887221 7.728836014 76574562 clamp_loader_T4_ATPase Bacteria phage REPLICATION Synechococcus cyanophage syn9 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.800324288 7.893119391 8.005045226 8.178058695 7.157793191 7.86077045 147886058 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 7.663982588 7.654787264 7.84705195 8.154096992 7.108826191 7.798528619 220721547 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 7.571565188 7.46473814 7.497425164 7.669874714 7.233602252 7.471151053 167034648 amyA Carbon cycling Carbon degradation Starch Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.252757097 8.23831833 8.260258327 7.101705539 8.001851908 7.939234056 152978594 obgE Stress Radiation stress Actinobacillus succinogenes 130Z superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus succinogenes; 8.237935688 8.813803523 8.876178044 8.792536652 8.939262875 189424879 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 7.350127925 7.236322103 119863435 ArsC Metal Resistance Arsenic Psychromonas ingrahamii 37 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas;species:Psychromonas ingrahamii; 7.095562102 7.302793837 7.085134204 7.430976626 44829107 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.154341722 6.991402483 27353547 arsB Metal Resistance Arsenic Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.962904991 7.946488354 7.90722487 7.731113489 219544735 pstA Stress Phosphate limitation Chloroflexus aggregans DSM 9485 7.06484651 7.106588225 254467736 fnr Stress Oxygen stress Rhodobacterales bacterium Y4I 7.329417584 7.673223644 7.701855684 7.728356822 7.605911068 7.82889421 7.367228123 146323982 endochitinase Carbon cycling Carbon degradation Chitin Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 7.018251753 6.758186207 71735201 ZntA Metal Resistance Zinc Pseudomonas syringae pv. phaseolicola 1448A 7.052880071 7.524844517 6.814490893 7.350398198 7.695433321 7.341343398 7.386393123 7.590436188 55230107 CopA Metal Resistance Copper Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 7.093682921 7.063031435 7.147515125 6.966480837 7.628974683 58270656 mdlB Organic Remediation Aromatics Aromatic carboxylic acid Cryptococcus neoformans var. neoformans JEC21 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Tremellomycetes;order:Tremellales;family:Tremellaceae;genus:Filobasidiella;species:Filobasidiella neoformans; 7.300295005 7.33195491 7.305420927 7.46570802 7.822179391 133778472 gyrB other category gyrB Leptospira fainei serovar Hurstbridge superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira fainei; 6.951735835 7.063068996 6.913981358 7.18047961 266623665 ara Carbon cycling Carbon degradation Hemicellulose Clostridium hathewayi DSM 13479 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 7.047734753 6.910128419 193215259 gyrB other category gyrB Chloroherpeton thalassium ATCC 35110 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chloroherpeton;species:Chloroherpeton thalassium; 7.350808139 7.083183794 6.874979733 7.298300136 18147155 gyrB other category gyrB Alcanivorax sp. I4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 7.046554265 7.317953056 7.56304438 16078883 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bacillus subtilis subsp. subtilis str. 168 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 7.655702821 7.556221334 7.320962 7.549311962 7.899505891 7.498346334 7.427667314 7.449715546 239910167 pstB Stress Phosphate limitation Thermococcus gammatolerans EJ3 6.549885783 7.396457139 261867602 toxin virulence toxin Aggregatibacter actinomycetemcomitans D11S-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Aggregatibacter;species:Aggregatibacter actinomycetemcomitans; 7.09380363 6.956287704 6.722097927 7.040099149 15787972 dsrA Sulphur sulfite reductase Desulfobulbus sp. DSM 2058 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfobulbus; 7.155602666 7.053936357 6.931128885 6.801849091 260771665 amyA Carbon cycling Carbon degradation Starch Vibrio metschnikovii CIP 69.14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio metschnikovii; 6.989159629 7.432494209 33391469 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.238370674 7.199648357 7.751797445 6.709401367 7.091887095 7.319480097 197301814 sigma_70 Stress Sigma factors Ruminococcus lactaris ATCC 29176 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus lactaris; 7.500756184 7.105012481 7.159063445 6.971601083 223689905 narH Stress Oxygen limitation Desulfobacterium autotrophicum HRM2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium;species:Desulfobacterium autotrophicum; 7.129315733 7.161612651 6.715030994 6.878560224 4335918 pap virulence adhesin Escherichia coli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 7.045025784 7.293494408 6.800152776 7.11364271 7.514473588 7.141478843 6.934372052 7.516573595 28204275 TerZ Metal Resistance Tellurium Clostridium tetani E88 6.701265216 7.045891116 270289824 ABC_antibiotic_transporter Antibiotic resistance transporter Pediococcus acidilactici 7_4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Pediococcus;species:Pediococcus acidilactici; 7.504487591 7.758560486 7.514106771 7.759313028 116754768 TerC Metal Resistance Tellurium Methanosaeta thermophila PT superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosaetaceae;genus:Methanosaeta;species:Methanosaeta thermophila; 7.052010398 7.089416657 66852912 chnB Organic Remediation Other Hydrocarbons Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 7.62088897 7.897678512 166364585 fnr Stress Oxygen stress Microcystis aeruginosa NIES-843 7.732757723 7.425856836 7.029902375 7.438820368 7.414262513 7.247235841 118003223 ArsC Metal Resistance Arsenic Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.849322496 7.885836707 7.295121825 7.549881002 8.032402575 7.48012214 7.601957586 7.589603797 119391669 narG Nitrogen Denitrification Aquimonas sp. D9-22 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Aquimonas; 7.70436924 7.502937442 7.756256736 7.892944936 7.67550955 7.664519244 7.379461175 97954550 nirK Nitrogen Denitrification Ochrobactrum sp. R-26465 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum; 7.696933192 7.477198148 7.750321423 7.722132801 iegHydrogenase6 hydrogenase Energy process Energy process 7.662186009 7.926410166 7.296971494 7.500052313 7.780514648 8.062408748 7.894768623 7.704663946 209491873 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira maxima; 7.355296515 6.90920225 27904560 sigma_70 Stress Sigma factors Buchnera aphidicola str. Bp (Baizongia pistaciae) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Buchnera;species:Buchnera aphidicola; 7.16723506 6.944463188 146281059 CadA Metal Resistance Cadmium Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 6.726799996 7.070929379 78222045 cytochrome Energy process Energy process Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 6.845282639 7.523639185 7.327791366 6.950322197 226322434 phoB Stress Phosphate limitation Coprococcus comes ATCC 27758 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Coprococcus;species:Coprococcus comes; 7.33140025 7.317747866 6.924053032 7.032025992 7.277448978 222149854 phn Organic Remediation Herbicides related compound Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 7.208913878 7.100585015 163745939 atzB Organic Remediation Herbicides related compound Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 7.360040633 7.351668122 7.078946263 7.54922445 52840260 gyrB other category gyrB Legionella pneumophila subsp. pneumophila str. Philadelphia 1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella;species:Legionella pneumophila; 7.251604967 7.431918654 254423449 obgE Stress Radiation stress Synechococcus sp. PCC 7335 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.180236 7.065122874 6.943506755 7.551231252 145248099 cah Organic Remediation Others Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.345910547 7.39753601 7.519497149 7.204078053 7.682693085 7.254780477 7.224762063 7.5362736 15485202 hly virulence hemolysin Bordetella bronchiseptica superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 7.438891529 8.047520502 8.047811702 8.196115809 8.430336359 8.180533206 7.771131784 14581403 phenol_oxidase Carbon cycling Carbon degradation Lignin Fusarium proliferatum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella; 7.048259089 7.407659585 74038292 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.324722481 7.212717264 116181820 glx Carbon cycling Carbon degradation Lignin Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 7.446451695 7.51228568 7.411442902 7.32902718 7.504179186 7.379009741 7.162197745 145216333 AceA Carbon cycling Carbon degradation others Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 7.528116555 7.531498532 7.036543436 7.577608945 182632207 atzA Organic Remediation Herbicides related compound Xylella fastidiosa M23 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xylella;species:Xylella fastidiosa; 7.186416173 7.139872654 7.7976957 7.383298359 256588108 clpC Stress Protein stress Cyanothece sp. PCC 8802 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.091927276 7.209198303 7.053471535 6.902446299 7.600375418 161385726 nhh Organic Remediation Aromatics Nitoaromatics Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 7.820335172 8.177375338 7.942148468 8.457124441 8.291663357 8.426880265 8.372800475 220904725 cytochrome Energy process Energy process Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 7.235427594 7.535613715 7.067825056 7.2258467 7.895922343 7.28564621 7.346783462 118051290 vanA Carbon cycling Carbon degradation Others Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.061485313 7.587438805 7.091431161 6.832736238 7.355950298 83853514 pnbA Organic Remediation Aromatics Nitoaromatics Oceanicaulis alexandrii HTCC2633 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis;species:Oceanicaulis alexandrii; 7.221357314 7.156316751 6.71124233 7.300102707 7.517605755 7.122705319 7.404267248 218290790 mer Metal Resistance Mercury Alicyclobacillus acidocaldarius LAA1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 7.17469422 7.069747926 7.17339777 7.613225262 89474100 nifH Nitrogen Nitrogen fixation uncultured cyanobacterium superkingdom:Bacteria;phylum:Cyanobacteria; 6.994882683 6.958291206 269835745 endochitinase Carbon cycling Carbon degradation Chitin Vibrio harveyi 1DA3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 8.156443184 7.711652456 7.970930662 7.98198761 7.794425386 7.926488439 8.089030092 153885240 gyrB other category gyrB Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 7.536198007 7.63367875 7.754279443 7.428731648 7.814792241 7.640222327 7.485882594 77969010 TerD Metal Resistance Tellurium Burkholderia sp. 383 7.945553339 8.078587745 7.450237743 7.728560769 8.025387874 222419392 pcc Carbon cycling Carbon fixation Anaplasma marginale str. Florida superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales;family:Anaplasmataceae;genus:Anaplasma;species:Anaplasma marginale; 7.171349212 7.397908775 7.226990447 6.754086243 7.60270731 256791196 nrfA Nitrogen Dissimilatory N reduction Slackia heliotrinireducens DSM 20476 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Slackia;species:Slackia heliotrinireducens; 7.388226109 7.833146335 7.649197636 7.430239998 7.609361985 7.469111593 7.413227748 7.341214879 112462197 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.860340729 7.805997355 7.851886506 7.844878742 8.33713103 218171126 sigma_70 Stress Sigma factors Cyanothece sp. PCC 7424 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.784163288 7.870119372 7.823435092 7.862964661 8.19866983 112280226 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.227439758 7.072099152 146154216 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 6.891215537 7.146716396 225208139 ppk Phosphorus Phosphorus utilization Coprococcus comes ATCC 27758 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Coprococcus;species:Coprococcus comes; 6.921512651 7.039229959 91787688 glnA Stress Nitrogen limitation Polaromonas sp. JS666 7.557548898 7.688314861 7.890300335 7.08414052 7.371586708 7.307503894 18034257 APS_AprA Sulphur adenylylsulfate reductase Desulfomonile tiedjei superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Desulfomonile; 7.016513632 7.291198729 6.659714524 7.50395157 255256552 clpC Stress Protein stress Thermoanaerobacterium thermosaccharolyticum DSM 571 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Thermoanaerobacterium;species:Thermoanaerobacterium thermosaccharolyticum; 7.067254269 7.153768853 6.744114656 7.277496887 88931110 ZntA Metal Resistance Zinc Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 6.964561997 7.395237017 7.35707367 6.910858289 7.372070693 192764328 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.241659264 7.504949939 7.378083683 7.304518096 189911049 sigma_70 Stress Sigma factors Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira biflexa; 7.038798337 7.17732277 118424452 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.232556423 7.277737707 6.948270404 6.658110661 221532703 Tet Antibiotic resistance other Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 6.712432366 7.329806761 206676762 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.120797966 6.985601227 91788819 fnr Stress Oxygen stress Polaromonas sp. JS666 7.011690807 7.306631915 258622145 endochitinase Carbon cycling Carbon degradation Chitin Vibrio mimicus VM573 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 7.45971308 7.245727546 196253477 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Clostridium thermocellum DSM 4150 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 6.836150775 7.327057703 91709132 pstB Stress Phosphate limitation Methylobacillus flagellatus KT 7.430915788 7.20152372 126436645 bphA Organic Remediation Aromatics Polycyclic aromatics Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.06882495 7.03501409 116061996 rd Organic Remediation Chlorinated solvents uncultured bacterium superkingdom:Bacteria; 7.103793069 6.980186201 169150725 vanA Carbon cycling Carbon degradation Others Acinetobacter baumannii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 7.329218796 7.163029181 6.95697494 7.370654186 42541182 Xamo Organic Remediation Other Hydrocarbons Mycobacterium sp. M156 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.197804197 7.463697987 67849453 ZntA Metal Resistance Zinc Clostridium thermocellum ATCC 27405 7.10018075 7.236404235 223692983 Tet Antibiotic resistance other Desulfobacterium autotrophicum HRM2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium;species:Desulfobacterium autotrophicum; 7.013817968 7.499317794 148845356 pcpB Organic Remediation Herbicides related compound Planctomyces maris DSM 8797 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces maris; 6.685314035 7.119175084 6.861753766 7.363958669 6.852778732 6.961157219 109290262 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.06446868 7.352101697 169003145 gdh Nitrogen Ammonification Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 6.970205293 7.380793759 6.773151465 6.946284668 7.553311559 6.932187536 7.005850909 110632086 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.134279229 7.110214516 6.926386989 6.826295401 7.32861616 78513192 nagI Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.513382066 7.733047633 7.480475446 7.92335291 118656400 ChrA Metal Resistance Chromium Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 7.580856482 7.179869432 7.253360504 7.230012965 218229082 ara Carbon cycling Carbon degradation Hemicellulose Roseburia intestinalis L1-82 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia intestinalis; 6.999397073 7.382053505 150259018 ahpC Stress Oxygen stress Victivallis vadensis ATCC BAA-548 superkingdom:Bacteria;phylum:Lentisphaerae;family:Victivallaceae;genus:Victivallis;species:Victivallis vadensis; 7.34321914 7.530443653 7.365609902 7.356072367 68053499 ArsA Metal Resistance Arsenic Leptospirillum ferriphilum superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 7.278874507 7.229185049 119774792 glucoamylase Carbon cycling Carbon degradation Starch Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 7.208212794 7.293343049 159890584 AceB Carbon cycling Carbon degradation others Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 7.399718479 7.466653769 7.318708833 7.160233739 189422570 pcc Carbon cycling Carbon fixation Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 7.517538143 7.562848386 722279 amyA Carbon cycling Carbon degradation Starch Bacillus sp. TS-23 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.137863008 6.92414674 110596880 rubisco Carbon cycling Carbon fixation Chlorobium ferrooxidans DSM 13031 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium ferrooxidans; 8.045333497 8.017570342 8.07643631 7.101308827 262200520 fnr Stress Oxygen stress Gordonia bronchialis DSM 43247 6.611679824 7.255561795 167583695 ArsC Metal Resistance Arsenic Burkholderia ubonensis Bu superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ubonensis; 7.386609437 7.732383556 7.500086603 7.41518933 7.813880684 151364339 sigma_70 Stress Sigma factors Shewanella baltica OS185 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 7.336856738 7.313769325 6.738183276 7.525433615 7.25117625 7.401167744 7.306630671 7.467606987 148536292 arsenic_resistance_gene Bioleaching Metal Resistance Sulfobacillus thermosulfidooxidans 7.001299596 7.202432981 7.013967199 7.295414297 7.099440205 7.253515365 189199948 pheA Organic Remediation Aromatics Other aromatics Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7.150662591 7.008771883 4633574 nosZ Nitrogen Denitrification uncultured bacterium 696AB superkingdom:Bacteria; 7.197476448 7.172309887 6.998992143 7.029416387 7.477036643 110082653 nirK Nitrogen Denitrification Mesorhizobium sp. NH-14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium; 7.101917633 7.071848327 6.776668416 7.041570891 7.428436329 7.584916504 7.133915595 222099667 catB Organic Remediation Aromatics BTEX and related aromatics Thermotoga neapolitana DSM 4359 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga;species:Thermotoga neapolitana; 7.092452604 7.350017408 6.813225935 7.348173991 154148861 nrfA Nitrogen Dissimilatory N reduction Campylobacter hominis ATCC BAA-381 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter hominis; 7.494414049 7.446901153 6.673877126 7.35279996 7.394291815 7.590949175 7.211967595 39995595 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 7.010138705 7.366508994 7.067293998 7.63606727 7.200994576 7.486626659 149117904 aclB Carbon cycling Carbon fixation Shewanella baltica OS223 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 6.841978438 6.906370461 196191597 gyrB other category gyrB Synechococcus sp. PCC 7335 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.335880388 7.272233393 7.09295488 7.286352053 118029357 HBH Organic Remediation Aromatics BTEX and related aromatics Burkholderia phymatum STM815 7.043209766 7.148211675 7.146711882 6.703441398 220910466 hrcA Stress Heat shock Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.956010064 7.757805771 7.305459301 7.868168059 7.749864722 7.785939536 7.863793796 229542879 narI Stress Oxygen limitation Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 6.997281103 7.184904087 238608959 phytase Phosphorus Phosphorus utilization Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 6.955060895 6.938239824 46124353 katE Stress Oxygen stress Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 7.086914945 7.322688289 6.970451873 7.185685358 189499827 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Chlorobium phaeobacteroides BS1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 6.867420513 6.97952656 6.753444704 7.142455216 212690129 ara Carbon cycling Carbon degradation Hemicellulose Bifidobacterium pseudocatenulatum DSM 20438 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium pseudocatenulatum; 6.990745977 7.535735303 7.225634338 6.79542523 6.764748486 6.97606717 127513449 cytochrome Energy process Energy process Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 7.19165587 7.348527597 6.897183287 7.115840147 7.425783703 7.557072981 7.620221777 46520009 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.869504743 7.666238661 7.087951173 7.706067322 7.747424213 7.581715339 7.720838605 7.623020983 145616579 nitA Organic Remediation Aromatics Other aromatics Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 7.178648367 7.428861433 46446709 gyrB other category gyrB Candidatus Protochlamydia amoebophila UWE25 superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Parachlamydiaceae;genus:Candidatus Protochlamydia;species:Candidatus Protochlamydia amoebophila; 6.924507728 7.00009104 58465043 gyrB other category gyrB Shewanella sp. HAW-EB1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 7.085539247 7.233734025 6.904077502 7.56990022 6.933535303 7.026703427 7.328104212 218166047 ChrA Metal Resistance Chromium Cyanothece sp. PCC 8801 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.262812456 7.65880425 7.184868905 7.414034869 156107560 sigma_24 Stress Sigma factors Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 6.966823131 7.368056623 68159571 gyrB other category gyrB Clostridium bolteae superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 7.232629599 7.427963956 6.961605536 7.120312014 7.426171089 7.416842435 254784503 sigma_32 Stress Sigma factors Teredinibacter turnerae T7901 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 7.149871175 7.32765681 145246824 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.555097623 7.381059049 7.481775613 7.112729529 7.4436998 7.472128359 78360019 ZntA Metal Resistance Zinc Shewanella sp. PV-4 7.528131645 7.464729895 7.133865026 6.771656081 7.752489245 7.387390468 7.135077464 15612666 clpC Stress Protein stress Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 6.70749098 7.482343578 110635853 exaA Organic Remediation Chlorinated solvents Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 7.194572925 7.338529644 7.385873541 6.606622752 7.374944011 6.89178109 7.395011617 269200467 Ni_Fe_hydrogenase Energy process Energy process Dehalococcoides sp. GT superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.086627551 7.123359072 7.169620016 7.455150764 76557777 P450 Energy process Energy process Natronomonas pharaonis DSM 2160 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natronomonas;species:Natronomonas pharaonis; 7.439959813 7.389850506 6.897055443 6.866761245 254227716 B_lactamase_C Antibiotic resistance Beta-lactamases Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 6.717797516 7.24650485 150028460 fnr Stress Oxygen stress Sinorhizobium medicae WSM419 7.926776747 7.453114534 7.866193637 7.961578807 119766998 pcc Carbon cycling Carbon fixation Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 7.956698716 8.282343716 8.261587652 8.624135768 163867241 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.112866933 7.307215989 7.14650799 7.473114005 34335348 nahF Organic Remediation Aromatics Polycyclic aromatics Pseudomonas sp. ND6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.514869112 7.81209974 7.134707461 7.559618614 7.380352003 7.633552598 157101508 Se Metal Resistance Selenium Campylobacter concisus 13826 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter concisus; 6.834862692 7.128432574 6.974540364 7.266110627 189194689 lip Carbon cycling Carbon degradation Lignin Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7.298136891 7.069748928 7.044155837 7.039376192 7.250684812 227069665 NiR Nitrogen Assimilatory N reduction uncultured archaeon 6.738680553 7.332079139 6.483511505 7.628270697 159046017 Catechol Organic Remediation Aromatics Other aromatics Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 7.872457601 7.838215599 7.595465908 7.829221908 227357669 AceA Carbon cycling Carbon degradation others Proteus mirabilis ATCC 29906 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 7.483569568 7.137816073 7.25523934 7.334826878 1082009 nitA Organic Remediation Aromatics Other aromatics 7.256787856 7.529795348 7.354371257 7.018291003 7.209810387 146280632 ArsC Metal Resistance Arsenic Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 7.09057593 7.317006324 7.078768858 7.17366219 7.532935228 268323234 mcrA Carbon cycling Methane Methane production uncultured archaeon superkingdom:Archaea; 7.060775322 7.349868314 7.172886235 7.230559151 260415887 NirB Nitrogen Assimilatory N reduction Silicibacter lacuscaerulensis ITI-1157 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria lacuscaerulensis; 7.568016042 7.716605917 7.572894567 7.981695459 8.062765397 7.841429317 7.991204238 94314350 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 7.389437118 7.14027691 50877479 obgE Stress Radiation stress Desulfotalea psychrophila LSv54 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfotalea;species:Desulfotalea psychrophila; 7.151873848 7.062540317 6.987024188 7.203176686 91769572 TerZ Metal Resistance Tellurium Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 7.497086057 7.23689626 7.375937923 7.597496187 91709537 ahpC Stress Oxygen stress Methylobacillus flagellatus KT superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 7.206126445 7.107571421 158335590 dnaK Stress Heat shock Acaryochloris marina MBIC11017 7.858089752 7.685188177 7.741874083 7.735712874 148570353 pstB Stress Phosphate limitation Roseiflexus sp. RS-1 8.046784482 7.501438617 7.392736229 7.560122968 7.783572038 7.545714173 7.459857319 7.636941489 114339287 sigma_24 Stress Sigma factors Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 7.017717083 7.238861879 38885207 ChnA Organic Remediation Other Hydrocarbons Rhodococcus sp. TK6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7.020806721 7.35229651 121588447 proV Stress Osmotic stress Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 6.837374266 7.107450352 77458808 iro virulence Pseudomonas fluorescens Pf0-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.011758355 7.273210129 20514379 pectinase Carbon cycling Carbon degradation Pectin Penicillium griseoroseum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 7.833088305 7.391771083 7.352231969 7.857376376 7.567557494 7.821704863 227356649 cydB Stress Oxygen limitation Proteus mirabilis ATCC 29906 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 7.539253309 7.281730388 7.190273031 7.12502846 269145731 sigma_32 Stress Sigma factors Neisseria cinerea ATCC 14685 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria cinerea; 7.210964012 7.324875353 6.733276649 7.609445071 7.112990676 6.983090049 212557863 grpE Stress Heat shock Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 7.446557761 7.091493066 70986839 tfdA Organic Remediation Aromatics Chlorinated aromatics Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 7.044979071 7.124499429 242371835 hly virulence hemolysin Staphylococcus epidermidis M23864:W1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus epidermidis; 6.658121621 6.574931985 7.425025683 238704813 SMR_antibiotics Antibiotic resistance transporter Yersinia aldovae ATCC 35236 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia aldovae; 6.869467418 7.273123157 157285373 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.419624091 7.339727171 6.95888919 7.052597298 7.531704094 7.214307841 256421640 fnr Stress Oxygen stress Chitinophaga pinensis DSM 2588 7.595202837 7.213832799 158449193 CopA Metal Resistance Copper Coprococcus eutactus ATCC 27759 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Coprococcus;species:Coprococcus eutactus; 7.506266211 7.371934164 7.077123351 7.614132933 7.796788745 7.649444655 7.786089711 167623284 AceB Carbon cycling Carbon degradation others Shewanella halifaxensis HAW-EB4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella halifaxensis; 7.448912985 7.424886741 7.151652589 7.571793841 88863366 pimF Organic Remediation Aromatics Aromatic carboxylic acid Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 7.640213783 7.509872377 195974916 gdh Nitrogen Ammonification Streptococcus equi subsp. zooepidemicus MGCS10565 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus equi; 7.225170855 7.247878465 6.930683866 7.380693431 149142121 pstB Stress Phosphate limitation Roseovarius sp. TM1035 7.984193815 7.74876529 7.540343515 7.537085081 7.42145207 7.984967236 7.38305856 197287375 narG Nitrogen Denitrification Proteus mirabilis HI4320 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 7.142440856 6.81787767 106889346 gyrB other category gyrB Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 7.60122799 7.428751669 7.214187141 7.19143353 7.476119897 7.237276827 7.21333289 7.561302552 262081034 sigma_32 Stress Sigma factors Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Haliangiaceae;genus:Haliangium;species:Haliangium ochraceum; 7.081580907 7.588418173 7.642376506 7.436328742 152982608 nasA Nitrogen Assimilatory N reduction Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 7.417544244 7.376015581 15158411 nagG Organic Remediation Aromatics Aromatic carboxylic acid Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.009507656 6.735286416 157692485 gyrB other category gyrB Bacillus pumilus SAFR-032 7.430708229 7.02389892 7.414747216 7.474492246 90587791 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 7.197278147 7.516313954 6.941683905 7.416727905 7.847498143 7.241057399 7.393099398 7.341164118 29654126 MFS_antibiotic Antibiotic resistance transporter Coxiella burnetii RSA 493 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Coxiellaceae;genus:Coxiella;species:Coxiella burnetii; 7.309093863 8.239470007 8.180872342 7.715583255 8.236974424 7.397093148 7.924614649 7.732364756 197787378 ArsC Metal Resistance Arsenic Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 7.424765513 7.154366345 153155 amyA Carbon cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7.517209493 7.711781237 7.877397959 7.724999566 7.885547381 85375695 B_lactamase_A Antibiotic resistance Beta-lactamases Erythrobacter litoralis HTCC2594 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 7.054222371 7.321524495 106769291 nifH Nitrogen Nitrogen fixation Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 7.516437668 7.200402661 7.294830287 7.440596088 7.705605533 83404776 nirS Nitrogen Denitrification uncultured organism 6.915611005 7.324309858 7.196112286 7.159671729 159890745 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 7.19084998 7.088718406 121605375 phdG Organic Remediation Aromatics Polycyclic aromatics Polaromonas naphthalenivorans CJ2 7.236379307 7.495953036 7.600185412 6.958544785 7.140110373 7.370325157 151939051 pimF Organic Remediation Aromatics Aromatic carboxylic acid Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.154292083 7.253330688 7.014105243 6.977625001 7.735693211 7.320744813 7.459825289 7.715495391 22255882 B_lactamase_C Antibiotic resistance Beta-lactamases Yersinia ruckeri superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia; 6.898182179 7.620070958 29350097 amyA Carbon cycling Carbon degradation Starch Bacteroides thetaiotaomicron VPI-5482 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides thetaiotaomicron; 7.172378585 7.192945847 255068471 fnr Stress Oxygen stress Neisseria sicca ATCC 29256 7.39910581 7.2940642 7.431075072 6.873630252 7.828127626 151422145 alkK Organic Remediation Others Nitratiruptor sp. SB155-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;genus:Nitratiruptor; 7.111033266 7.14347946 110632258 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.303180744 7.234348649 145234801 phtB Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.382522446 7.23635507 7.346281238 7.34843676 116254765 iro virulence Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 6.827318976 7.216757284 29140278 SMR_antibiotics Antibiotic resistance transporter Salmonella enterica subsp. enterica serovar Typhi Ty2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 7.440165141 7.412258479 7.153392157 7.109062318 114544719 phtA Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.828799634 7.896149979 7.430181028 7.853065741 7.793712584 7.503468435 7.868850411 7.653642632 56551004 SMR_antibiotics Antibiotic resistance transporter Zymomonas mobilis subsp. mobilis ZM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Zymomonas;species:Zymomonas mobilis; 7.254190231 7.207923741 7.218330968 7.490396776 116229560 pimF Organic Remediation Aromatics Aromatic carboxylic acid Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 7.260411256 7.343943166 7.499237206 7.261309767 7.38817191 7.840186357 7.595892093 27381918 linC Organic Remediation Pesticides related compound Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8.399709667 8.080221237 7.502904409 8.241575382 8.256421224 8.311904873 7.991063052 211589807 CadA Metal Resistance Cadmium Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 7.602929324 7.72646214 8.266047026 7.245061647 7.593145191 8.146067616 218723807 mer Metal Resistance Mercury Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 7.123307924 7.274003483 6.675511648 7.629181906 7.167359804 7.119893839 7.2263475 116013246 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.421357628 7.279328476 7.316549423 7.963798885 7.697416715 7.566790619 7.413028277 186472404 pcc Carbon cycling Carbon fixation Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.696941986 7.356393268 7.406782478 8.067733855 7.05221079 7.282041631 7.57865042 28204118 obgE Stress Radiation stress Clostridium tetani E88 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium tetani; 7.62772314 7.238273812 7.515602287 7.43890979 196198788 ara Carbon cycling Carbon degradation Hemicellulose Clostridium thermocellum DSM 4150 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 6.969299971 7.041395606 33520884 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.314762193 7.213284826 163738177 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Phaeobacter gallaeciensis BS107 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 7.519150187 7.637977583 7.762929739 7.519875965 7.715922101 7.528860066 7.682431659 218259445 ChrA Metal Resistance Chromium Parabacteroides johnsonii DSM 18315 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides johnsonii; 7.103003566 7.378314331 119951727 ArsC Metal Resistance Arsenic Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 7.77670978 7.438150682 7.486424628 114552360 glucoamylase Carbon cycling Carbon degradation Starch Mariprofundus ferrooxydans PV-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Zetaproteobacteria;order:Mariprofundales;family:Mariprofundaceae;genus:Mariprofundus;species:Mariprofundus ferrooxydans; 7.406389607 7.796067495 7.92492214 7.619092901 7.315369729 7.368944032 7.856104888 118718175 tftH Organic Remediation Aromatics Chlorinated aromatics Burkholderia multivorans ATCC 17616 7.546104129 7.653298099 118434236 ArsC Metal Resistance Arsenic Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 7.030847633 7.472461403 7.000938277 6.770925534 7.782618953 197773295 ppx Phosphorus Phosphorus utilization Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 8.012559748 8.168322944 8.199949167 7.776942873 8.384193795 7.702348437 7.598768126 147921163 rubisco Carbon cycling Carbon fixation uncultured methanogenic archaeon RC-I superkingdom:Archaea;phylum:Euryarchaeota; 7.71805885 7.910281909 8.012387983 7.682463151 7.608746235 7.758115739 7.984657325 119484347 TerZ Metal Resistance Tellurium Lyngbya sp. PCC 8106 7.460300747 7.522052661 169629812 inv virulence invasion Mycobacterium abscessus ATCC 19977 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium abscessus; 7.347056566 7.80622738 7.310438897 7.705126708 52139927 scaffold Bacteria phage STRUCTURAL Enterobacteria phage JS98 order:Caudovirales;family:Myoviridae;genus:T4-like viruses;species:Enterobacteria phage JS; 7.290729682 7.16479701 6.961853682 7.101140448 7.532568282 225646047 glnA Stress Nitrogen limitation Persephonella marina EX-H1 6.973283749 7.334630235 6.817331986 7.349967125 220029172 contractile_tail_sheath_protein Bacteria phage STRUCTURAL Enterobacteria phage JSE order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.184656471 6.960238978 7.193367069 7.060837801 121534725 arsB Metal Resistance Arsenic Thermosinus carboxydivorans Nor1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Thermosinus;species:Thermosinus carboxydivorans; 7.323049578 7.104641062 6.766902453 7.299635758 32446038 catB Organic Remediation Aromatics BTEX and related aromatics Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 7.355567306 7.305125604 89343581 fnr Stress Oxygen stress Rhodoferax ferrireducens T118 7.181162338 7.990500753 7.599150086 7.214320724 8.236049866 7.738004782 7.235255152 7.653919561 24380372 ctsR Stress Protein stress Streptococcus mutans UA159 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus mutans; 7.195894693 7.183319676 6.935518806 7.014179746 238018971 sigma_70 Stress Sigma factors Veillonella dispar ATCC 17748 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Veillonella;species:Veillonella dispar; 7.654301717 7.582949235 7.010403989 7.505432486 7.754970704 7.484107004 7.906558447 195952847 obgE Stress Radiation stress Hydrogenobaculum sp. Y04AAS1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenobaculum; 7.092196796 6.925132555 157373433 glnA Stress Nitrogen limitation Shewanella sediminis HAW-EB3 6.890733959 7.166511959 6.734474989 7.145877431 108765788 sigma_24 Stress Sigma factors Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 7.538715928 7.560879059 63029739 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6.967482187 7.066047952 6.97108474 7.395186907 148261781 cytochrome_c Bioleaching Electron transport Acidiphilium cryptum JF-5 7.383020986 7.690715336 7.279272333 7.710292546 7.533394428 7.754467592 34017098 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 6.778635362 7.233388234 23345281 AceA Carbon cycling Carbon degradation others Magnaporthe grisea superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe; 7.546380482 7.225850804 74038412 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.1069721 7.400533778 7.06046778 7.422065717 6.951463874 7.121734119 157679419 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.383053534 7.701842973 7.413356459 7.422624018 7.190892605 7.447287041 7.200755196 261249769 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.053245172 7.621627815 21325172 catB Organic Remediation Aromatics BTEX and related aromatics Corynebacterium glutamicum ATCC 13032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 7.52539063 7.475186425 7.060891051 7.539254172 7.549875051 7.649423456 7.717784256 88181185 amyA Carbon cycling Carbon degradation Starch Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 6.804050893 6.873816289 256745536 dsrB Sulphur sulfite reductase Clostridium papyrosolvens DSM 2782 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium papyrosolvens; 6.925038767 7.270114476 7.459935972 7.268168209 7.455213303 78188316 aclB Carbon cycling Carbon fixation Chlorobium chlorochromatii CaD3 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium chlorochromatii; 7.534383693 7.434470192 7.164508417 7.467808071 7.490959492 6.988010444 7.420670483 226227000 gdh Nitrogen Ammonification Gemmatimonas aurantiaca T-27 superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 7.203351994 7.581240851 7.642142581 7.604954517 7.573691679 7.598461447 190685023 oxyR Stress Oxygen stress Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 7.484282852 7.248671573 219550199 pimF Organic Remediation Aromatics Aromatic carboxylic acid Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.048498993 6.989446211 170177113 glnA Stress Nitrogen limitation Thermotoga sp. RQ2 6.750534736 7.050238006 114798313 merT Metal Resistance Mercury Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 7.166943692 7.197890689 146399463 sigma_32 Stress Sigma factors Geobacter uraniireducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 6.97809263 7.36501254 116872904 dnaK Stress Heat shock Listeria welshimeri serovar 6b str. SLCC5334 7.387384672 7.26720756 6.842582281 7.162049498 167044922 gyrB other category gyrB uncultured marine microorganism HF4000_APKG8D23 7.289069208 7.121882466 169819443 limEH Carbon cycling Carbon degradation Others Burkholderia cenocepacia MC0-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 8.067917889 8.03929006 8.190293465 7.878716191 7.781137498 7.896657454 8.038114714 7.851305238 171913354 exaA Organic Remediation Chlorinated solvents Verrucomicrobium spinosum DSM 4136 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Verrucomicrobium;species:Verrucomicrobium spinosum; 7.615087564 7.892345016 7.113409107 7.16020989 7.801276075 84778395 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.173236859 7.382467163 iegHydrogenase34 hydrogenase Energy process Energy process 7.746747709 7.41393472 7.101891575 7.378650633 167463432 sigma_70 Stress Sigma factors Paenibacillus larvae subsp. larvae BRL-230010 7.221193505 7.251670931 7.10297381 7.468381413 261415136 mannanase Carbon cycling Carbon degradation Hemicellulose Fibrobacter succinogenes subsp. succinogenes S85 superkingdom:Bacteria;phylum:Fibrobacteres;class:Fibrobacteres;order:Fibrobacterales;family:Fibrobacteraceae;genus:Fibrobacter;species:Fibrobacter succinogenes; 7.310904804 7.480816666 7.580642529 7.096748859 7.766411784 7.230995957 7.030981547 118687552 xylC Organic Remediation Aromatics BTEX and related aromatics Marinomonas sp. MWYL1 7.018393344 7.301414282 6.584095815 7.220470076 222109087 nmoA Organic Remediation Aromatics Nitoaromatics Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.414531757 7.172953566 6.993170451 6.747412419 7.577455287 7.118588031 7.478468054 206684927 fnr Stress Oxygen stress Rhodobacterales bacterium Y4I 7.450902256 7.416598877 7.054363613 6.98044487 148512085 B_lactamase_C Antibiotic resistance Beta-lactamases Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.028590325 7.014952505 6.969211067 6.824974601 126320056 atzC Organic Remediation Herbicides related compound Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.52049994 7.608114907 7.416364107 7.400810894 7.510651185 7.818210241 148474834 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 6.86478371 6.981880956 6.965227247 6.931046528 197210187 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.099371609 7.158603997 7.24569094 7.199989938 7.808665283 63029757 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.530702983 7.478785953 15075128 nhh Organic Remediation Aromatics Nitoaromatics Sinorhizobium meliloti superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium; 7.053003098 7.006157347 41324668 CopA Metal Resistance Copper Corynebacterium glutamicum ATCC 13032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 7.189521195 7.237631084 91802041 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 7.188099844 7.87819041 7.852550874 7.481579209 7.464458897 7.434431898 7.530418105 23978220 gyrB other category gyrB Nostoc linckia superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc; 7.376667388 7.449822781 7.333128531 7.493884583 7.747599587 7.837714999 7.894727155 7.911926346 257167989 ahpC Stress Oxygen stress Pichia angusta superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Pichia; 7.482379645 7.645817601 7.315438702 7.891799596 7.788987912 7.51041825 7.66774023 7.878029269 154252145 sigma_32 Stress Sigma factors Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 7.818735037 7.687339679 7.774896056 8.275824273 8.451198558 8.049809338 8.159251779 146329102 oxyR Stress Oxygen stress Dichelobacter nodosus VCS1703A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Cardiobacteriales;family:Cardiobacteriaceae;genus:Dichelobacter;species:Dichelobacter nodosus; 6.718888941 6.915236356 251795828 pstB Stress Phosphate limitation Paenibacillus sp. JDR-2 7.042158914 7.20119542 6.84460599 7.376952709 110833597 ChrA Metal Resistance Chromium Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 7.563141158 7.668299666 8.12791646 8.156766867 7.529160045 7.641799918 7.824153908 90074677 cda Carbon cycling Carbon degradation Starch Bacillus sp. G-825-6 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.306396159 7.13488168 7.112262651 7.375270859 109898402 fnr Stress Oxygen stress Pseudoalteromonas atlantica T6c 7.380723002 6.905011815 6.821773237 7.056426833 73662830 aclB Carbon cycling Carbon fixation Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus saprophyticus; 7.303865296 7.188186153 77684320 tutFDG Organic Remediation Aromatics BTEX and related aromatics Alkaliphilus metalliredigenes QYMF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus metalliredigens; 7.306311662 7.224568872 7.188432665 7.044319524 116101021 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Streptococcus thermophilus LMD-9 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus thermophilus; 7.290346896 7.448151062 7.134527526 6.824516978 7.465693988 7.433597043 7.757013057 119483824 nitA Organic Remediation Aromatics Other aromatics Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 7.736092554 8.05329805 154251856 pimF Organic Remediation Aromatics Aromatic carboxylic acid Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 7.449710366 7.881760378 7.533242432 7.787003536 7.974682258 7.706315117 281402205 obgE Stress Radiation stress Prevotella oris F0302 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella oris; 6.776304126 6.791119722 4590400 integrase_serine Bacteria phage REPLICATION Enterococcus phage phiFC1 order:Caudovirales;family:Siphoviridae; 7.289039643 7.224119181 254454568 obgE Stress Radiation stress Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 7.498101732 7.585611926 7.491741327 7.554915853 7.925936562 7.841604257 7.997005996 186909435 amoA Nitrogen Nitrification superkingdom:Bacteria; 6.999499153 7.135427446 119857054 pcaG Organic Remediation Aromatics Other aromatics Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 6.773476052 7.106448159 255109261 glnA Stress Nitrogen limitation Sideroxydans lithotrophicus ES-1 7.763017091 7.606949628 7.400387449 7.76580893 7.990452614 7.922461429 7.896156807 7.910988581 189426311 pcc Carbon cycling Carbon fixation Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 7.109307119 6.917455572 261406831 rubisco Carbon cycling Carbon fixation Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.545147435 7.431042139 7.533841244 126649503 TerZ Metal Resistance Tellurium Bacillus sp. B14905 6.9031556 7.129713879 29143483 TerC Metal Resistance Tellurium Salmonella enterica subsp. enterica serovar Typhi Ty2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 6.676756659 7.457753001 157322886 narH Stress Oxygen limitation Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 7.842445962 7.731040219 7.81000311 7.761541019 7.798193342 7.608885814 7.786665951 118735571 alkB Organic Remediation Other Hydrocarbons Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 6.748938862 7.536228322 7.270627485 6.965849214 111071320 ChrA Metal Resistance Chromium Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 7.18154574 7.279656128 7.372680059 7.092930475 7769068 ArsC Metal Resistance Arsenic Acidithiobacillus ferrooxidans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus; 7.250368456 7.348822385 6.915881333 6.950777188 7.686399827 7.395748294 6.921417412 7.596969498 226973644 T4_type_portal_protein Bacteria phage REPLICATION Shigella phage phiSboM-AG3 order:Caudovirales;family:Myoviridae; 6.747692034 7.034142532 262308326 AceA Carbon cycling Carbon degradation others Acinetobacter lwoffii SH145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter lwoffii; 7.237268233 7.433499665 169826225 AceA Carbon cycling Carbon degradation others Lysinibacillus sphaericus C3-41 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Lysinibacillus;species:Lysinibacillus sphaericus; 7.045027806 7.182074826 214031977 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.676106047 7.436114578 7.235794783 7.937372745 7.557143672 7.605231077 93356582 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 7.536585027 7.876529096 90419990 pulA Carbon cycling Carbon degradation Starch Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 7.350053634 7.19664393 7.380707405 7.64710497 77975591 dmsA Organic Remediation Others Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 6.909443685 7.235386713 56419860 Al Metal Resistance Aluminum Geobacillus kaustophilus HTA426 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus kaustophilus; 7.203632946 7.148484925 7.152825923 7.168900455 7.047773696 134094867 narJ Stress Oxygen limitation Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 7.455339095 7.199421968 7.615163499 7.713021044 7.707320255 7.473087384 193001958 obgE Stress Radiation stress Mycoplasma arthritidis 158L3-1 superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Mycoplasmatales;family:Mycoplasmataceae;genus:Mycoplasma;species:Mycoplasma arthritidis; 7.184374149 7.129970438 218717766 nagG Organic Remediation Aromatics Aromatic carboxylic acid Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 7.349100699 7.517209142 7.405053908 7.064841987 7.774269705 7.313600635 7.161106389 7.255217628 2597838 nirK Nitrogen Denitrification Bradyrhizobium japonicum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.428465653 7.476945937 8.122670399 7.466561046 7.645723289 193077109 ArsC Metal Resistance Arsenic Acinetobacter baumannii ATCC 17978 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 7.418547902 7.26457154 7.406339149 7.476652513 6.983203553 7.11292754 116872416 proV Stress Osmotic stress Listeria welshimeri serovar 6b str. SLCC5334 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria welshimeri; 7.401976369 7.330123182 145205032 narI Stress Oxygen limitation Chlorobium phaeovibrioides DSM 265 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeovibrioides; 7.696253569 7.720260739 7.279072991 6.801284773 8.067902215 7.485676607 7.736883401 126317443 nitro Organic Remediation Others Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.061908179 8.070649773 8.115146492 8.750930687 8.290714261 8.472160498 8.400248346 8.419515745 229918225 amyA Carbon cycling Carbon degradation Starch Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 6.775364261 6.967434667 7.124539178 7.328163424 157371318 pimF Organic Remediation Aromatics Aromatic carboxylic acid Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 7.392857859 7.407656266 6.999777574 6.656327839 7.2600843 7.393405402 83953392 phn Organic Remediation Herbicides related compound Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 7.655091209 8.025074378 7.6168504 7.555739161 7.788072408 74420655 ppx Phosphorus Phosphorus utilization Nitrobacter winogradskyi Nb-255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 7.065562647 7.105106425 7.027477749 7.248727608 7.567495906 7.536003108 7.510704856 114562536 pstA Stress Phosphate limitation Shewanella frigidimarina NCIMB 400 7.05805481 7.416090066 114191556 nagI Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.700167683 7.597550473 7.319497302 7.287858773 7.119712219 7.301225126 7.288378887 163858926 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 6.819185033 7.053640983 115376318 catB Organic Remediation Aromatics BTEX and related aromatics Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 7.476703572 7.296480245 49474880 grpE Stress Heat shock Bartonella henselae str. Houston-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella henselae; 7.265147193 7.273146883 6.898822254 7.458159856 7.112922839 7.572199871 39653695 single_strand_annealing_protein Bacteria phage REPLICATION Streptococcus phage EJ-1 order:Caudovirales;family:Myoviridae; 7.431629955 7.204348908 88818058 amyA Carbon cycling Carbon degradation Starch Pseudoalteromonas tunicata D2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas tunicata; 7.327792638 7.47473888 81251152 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosovibrio; 7.491044868 7.569635479 7.335883989 7.483614401 74316935 sox Sulphur Sulphur oxidation Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 7.506287453 7.44406652 7.314005552 7.46168135 7.570845333 56908432 SMR_antibiotics Antibiotic resistance transporter Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 8.071549714 7.50084401 7.282630706 7.816436943 151302289 APS_AprB Sulphur adenylylsulfate reductase Desulfobulbus propionicus DSM 2032 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfobulbus;species:Desulfobulbus propionicus; 7.166228673 7.378944447 7.172052451 7.47910351 7.830752022 7.680012678 7.85886507 258523075 glnA Stress Nitrogen limitation Corynebacterium genitalium ATCC 33030 6.86174255 7.461733578 6.957120044 7.766635827 7.276170853 6.973311503 91204531 catB Organic Remediation Aromatics BTEX and related aromatics Candidatus Kuenenia stuttgartiensis superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;genus:Candidatus Kuenenia; 7.132538371 7.24471863 56698207 ahpC Stress Oxygen stress Ruegeria pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 7.3215899 7.633653448 7.400622882 7.048806836 260434077 sigma_32 Stress Sigma factors Silicibacter lacuscaerulensis ITI-1157 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria lacuscaerulensis; 7.432259202 7.569505389 7.478621967 7.703346772 111152530 TerD Metal Resistance Tellurium Frankia alni ACN14a 7.708616015 7.626896481 7.66626956 7.541414279 7.432700917 7.261600709 116695132 fnr Stress Oxygen stress Ralstonia eutropha H16 6.97029909 7.422810901 7.453086452 6.786930741 7.051220376 7.253987695 145296069 amyA Carbon cycling Carbon degradation Starch Corynebacterium glutamicum R 7.486284379 7.51077695 7.228279731 7.69704415 7.635773624 7.616610116 8.024597922 154277744 nitA Organic Remediation Aromatics Other aromatics Ajellomyces capsulatus NAm1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 7.079861582 7.380829465 6.925037947 7.511901801 110638211 mhpC Organic Remediation Aromatics Aromatic carboxylic acid Cytophaga hutchinsonii ATCC 33406 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Cytophaga;species:Cytophaga hutchinsonii; 7.062561734 6.804342694 163841151 SMR_antibiotics Antibiotic resistance transporter Renibacterium salmoninarum ATCC 33209 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Renibacterium;species:Renibacterium salmoninarum; 6.898371988 6.981989962 6.826326642 7.21102173 7.030887021 6.795470859 30138248 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Nitrosomonas europaea ATCC 19718 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas europaea; 7.521264948 7.657625666 7.384556248 7.445916195 7.372754894 7.475480464 115366701 pilin virulence pilin Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 7.926660639 7.502402054 8.134113643 7.842457513 7.712651165 7.95978523 7.615814026 10640402 heat_shock_protein Bioleaching other category Thermoplasma acidophilum;Thermoplasma acidophilum DSM 1728 6.788464691 6.939561784 7.221841949 7.437546037 238716706 katE Stress Oxygen stress Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 7.626813835 7.365035949 7.130061765 7.146692832 237786551 fnr Stress Oxygen stress Corynebacterium kroppenstedtii DSM 44385 7.211504692 7.48575218 7.546595155 7.495893429 237637079 amoA Nitrogen Nitrification superkingdom:Archaea; 6.66256829 6.795453178 228251282 obgE Stress Radiation stress Streptococcus salivarius SK126 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus salivarius; 7.271290956 7.23231203 7.394379739 7.202992548 183598094 proV Stress Osmotic stress Providencia stuartii ATCC 25827 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia stuartii; 7.415567461 7.056091778 223524549 mer Metal Resistance Mercury Ricinus communis superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Streptophyta;order:Malpighiales;family:Euphorbiaceae;genus:Ricinus; 7.597697524 7.432768074 167623164 sigma_38 Stress Sigma factors Shewanella halifaxensis HAW-EB4 6.97995665 7.084397149 89241986 rubisco Carbon cycling Carbon fixation Nodularia sp. 'WH Baltic Sea isolate' superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nodularia; 6.874501696 7.384972775 6.658480887 7.25569995 77862470 mcrA Carbon cycling Methane Methane production uncultured archaeon superkingdom:Archaea; 7.256255075 6.957682413 119401254 BpH Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7.223230175 7.419782292 7.331131707 7.033030147 7.637340943 255066802 sigma_24 Stress Sigma factors Neisseria sicca ATCC 29256 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria sicca; 7.431273816 7.296157853 111224161 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 8.272059931 7.849623703 7.820657838 8.291211817 8.379202827 8.285923985 8.331540596 151580348 linB Organic Remediation Pesticides related compound Opitutaceae bacterium TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 7.616430903 7.616605625 7.20692651 7.867019346 118197177 gyrB other category gyrB Xanthomonas albilineans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas; 7.134335017 7.300888547 218169575 obgE Stress Radiation stress Cyanothece sp. PCC 8801 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 6.995433683 6.899983791 6899189 FTHFS Carbon cycling Acetogenesis Ureaplasma parvum serovar 3 str. ATCC 700970 superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Mycoplasmatales;family:Mycoplasmataceae;genus:Ureaplasma;species:Ureaplasma parvum; 7.064687453 7.147180953 7.058245636 7.015807344 158449763 mannanase Carbon cycling Carbon degradation Hemicellulose Coprococcus eutactus ATCC 27759 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Coprococcus;species:Coprococcus eutactus; 7.333984505 7.558263176 7.229196347 7.7977886 163848962 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 7.675729807 7.358390491 7.316123295 7.935125571 7.666328217 7.87944583 7.801757541 226095513 bphF1 Organic Remediation Aromatics Polycyclic aromatics Brevibacillus brevis NBRC 100599 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus brevis; 7.380885586 7.376892583 7.398518853 7.086511652 7.504850796 7.252689896 7.397152154 229230163 APS_AprB Sulphur adenylylsulfate reductase Desulfotomaculum acetoxidans DSM 771 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum acetoxidans; 6.972659587 7.514576178 7.148857158 7.678432081 7.383464193 7.408596125 7.688254179 7.435170418 148261736 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 7.476077946 7.649570323 7.118374111 7.073567652 7.81710149 7.346557992 7.144306572 7.35045649 153094182 cydA Stress Oxygen limitation Mannheimia haemolytica PHL213 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Mannheimia;species:Mannheimia haemolytica; 6.86959756 6.879462485 91709974 SMR_antibiotics Antibiotic resistance transporter Methylobacillus flagellatus KT superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 6.842577102 6.945679462 18147153 gyrB other category gyrB Alcanivorax sp. Mho1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 7.027453935 7.416836516 7.060201229 6.858820053 31747776 nif_II Bioleaching Nitrogen Leptospirillum ferrooxidans 7.040654081 6.911991302 116490448 fnr Stress Oxygen stress Oenococcus oeni PSU-1 7.032330283 7.087010524 90589277 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 7.189107681 6.803400501 7.244406955 6.959112261 7.170272363 167355399 ureC Nitrogen Ammonification Shewanella halifaxensis HAW-EB4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella halifaxensis; 7.180754064 7.03638333 6.961077422 6.663293455 27381172 fnr Stress Oxygen stress Bradyrhizobium japonicum USDA 110 7.184441479 7.55419331 7.373396145 7.283021787 7.217096356 6320852 alkK Organic Remediation Others Saccharomyces cerevisiae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Saccharomyces; 7.0380795 6.722995906 15186859 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.502940991 7.31573053 117675833 gyrB other category gyrB Rathayibacter festucae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Rathayibacter; 7.737279152 8.192876077 8.048665795 8.436286158 8.267570581 8.061043922 227503463 oxyR Stress Oxygen stress Corynebacterium accolens ATCC 49725 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium accolens; 7.166971613 7.233669271 6.744529369 6.891107941 7.00322488 7.216701021 67157699 nmoA Organic Remediation Aromatics Nitoaromatics Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 7.168787371 7.080494453 212554871 pilin virulence pilin Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 7.69187087 7.18358628 6.870499917 7.277059287 7.547127805 7.222044531 7.047420312 7.435487403 218782720 bco Organic Remediation Aromatics Aromatic carboxylic acid Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 7.911520796 7.519333355 87331900 arhA Organic Remediation Aromatics Heterocyclic aromatics uncultured bacterium superkingdom:Bacteria; 7.253913283 7.113436114 7.08607912 6.62274856 124265546 alkK Organic Remediation Others Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 7.771688874 7.593611667 7.302755649 7.669944415 7.689662471 7.467680334 7.47650462 89241926 mcrA Carbon cycling Methane Methane production uncultured archaeon superkingdom:Archaea; 7.179405349 7.111136866 7.455804483 7.622066957 196158237 phoB Stress Phosphate limitation Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 7.184126234 7.154471804 7.265513078 7.014436675 7.157588919 7.190072242 81298938 fnr Stress Oxygen stress Synechococcus elongatus PCC 7942 7.217862381 7.890611134 7.857471377 7.67193784 8.154589034 7.510366057 7.708335765 86166872 pilin virulence pilin Synechococcus sp. RS9917 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.060439267 7.600322947 145233875 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.038502144 7.099446457 156231932 pstB Stress Phosphate limitation Roseiflexus castenholzii DSM 13941 7.163040981 7.078623255 6.602089457 7.437763245 7.150501413 6.733605951 7.269834476 82411414 phoB Stress Phosphate limitation Nitrosospira multiformis ATCC 25196 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira;species:Nitrosospira multiformis; 7.892091971 8.158728471 8.325749365 7.269687592 8.401336669 7.37163168 7.539605864 8.181713595 82714869 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.605225923 7.710050994 7.135254285 7.63188895 7.599030699 7.557461017 7.63737906 7.418119495 21227478 ppx Phosphorus Phosphorus utilization Methanosarcina mazei Go1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina mazei; 7.056120448 7.106750431 21326995 amyA Carbon cycling Carbon degradation Starch Thermococcus sp. GU5L5 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus; 7.158697285 7.112510269 77378405 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.739810202 7.352407 7.73762971 8.135670531 8.031555749 7.902357267 7.97461456 256820118 sigma_24 Stress Sigma factors Capnocytophaga ochracea DSM 7271 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga ochracea; 7.775757065 7.548987307 7.156540868 7.777125524 7.432968723 7.505566398 7.61961683 145241474 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.480003121 7.212596254 7.059580715 7.214435491 7.016253933 7.225504627 7.525645787 154686755 pstB Stress Phosphate limitation Bacillus amyloliquefaciens FZB42 6.948892625 7.155139255 6.96762136 7.282792104 6.956945956 6.906222185 7.201693143 169639007 glnA Stress Nitrogen limitation Candidatus Desulforudis audaxviator MP104C 7.744424406 7.904317629 7.707833884 8.067643875 8.00695058 7.913016661 7.709766947 189499814 hrcA Stress Heat shock Chlorobium phaeobacteroides BS1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 7.278546412 7.533815636 6.649600515 7.527655492 7.282623058 7.525431677 150270597 trzN Organic Remediation Herbicides related compound Bacteroides capillosus ATCC 29799 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides capillosus; 7.199988047 7.610570217 7.471087422 7.24486711 118027528 4HBH Organic Remediation Aromatics BTEX and related aromatics Burkholderia phymatum STM815 7.647983612 7.453428618 7.669370198 7.70987851 7.806584544 148658244 pstA Stress Phosphate limitation Roseiflexus sp. RS-1 6.901050218 7.34812951 119865564 gyrB other category gyrB Psychromonas ingrahamii 37 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas;species:Psychromonas ingrahamii; 7.983729752 7.917993968 7.486464653 8.152828687 7.939576635 7.852532071 7.736592985 7.83776147 13249577 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.372269361 7.180406437 27376399 alkK Organic Remediation Others Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 6.981456968 7.084380337 6.682251264 6.823077885 7.473197717 27657345 Catechol Organic Remediation Aromatics Other aromatics Defluvibacter lusatiensis superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Defluvibacter; 7.293700888 7.143269384 7.202273719 7.42492862 88703413 mer Metal Resistance Mercury gamma proteobacterium KT 71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 7.390660107 7.010138276 39997789 silC Metal Resistance Silver Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 7.724998879 7.837212561 7.072078942 7.455601129 55978107 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6.894670276 7.174361453 30725044 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Streptomyces thermoviolaceus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8.155993764 8.314081515 7.717801863 8.06603888 7.832544568 8.28373141 8.042425424 19909565 gyrB other category gyrB Brevundimonas diminuta superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas; 7.826220517 7.40467162 7.507198024 7.22509966 7.62457758 146292492 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Shewanella putrefaciens CN-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella putrefaciens; 7.606370535 7.858353089 7.795274662 8.440093551 8.140343565 7.986303879 8.077399632 241462950 AceB Carbon cycling Carbon degradation others Allochromatium vinosum DSM 180 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 7.547391582 7.714902767 89345460 fnr Stress Oxygen stress Rhodoferax ferrireducens T118 7.088267863 7.463972126 164635576 glx Carbon cycling Carbon degradation Lignin Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 7.491243451 6.963283006 255268191 fnr Stress Oxygen stress Bryantella formatexigens DSM 14469 7.430652244 7.74298611 6.694878039 6.982458494 7.585883394 6.91229503 6.991792334 113526742 silP Metal Resistance Silver Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 7.26630078 7.471204022 7.401102703 7.769895233 7.707089955 7.75585031 7.634663037 161985905 sigma_70 Stress Sigma factors Acholeplasma laidlawii PG-8A superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Acholeplasmatales;family:Acholeplasmataceae;genus:Acholeplasma;species:Acholeplasma laidlawii; 6.899961445 7.107520995 213957717 TerC Metal Resistance Tellurium Propionibacterium acnes SK137 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 7.731438354 7.741378233 7.89373599 7.281904897 7.547607263 7.702754054 7.634634393 27355865 nmoA Organic Remediation Aromatics Nitoaromatics Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.116948239 7.394385231 6.871268249 7.423128579 7.619453682 7.158451633 7.309501229 7.744216726 151302186 APS_AprA Sulphur adenylylsulfate reductase Desulfohalobium retbaense DSM 5692 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium;species:Desulfohalobium retbaense; 7.430370357 7.533177844 6.985801344 7.60989213 7.513257508 7.367666371 209523278 CadA Metal Resistance Cadmium Arthrospira maxima CS-328 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira maxima; 7.449907989 7.259896978 7.285139851 7.033516229 7.159266538 254819835 obgE Stress Radiation stress Mycobacterium intracellulare ATCC 13950 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 7.59702798 7.676320421 8.017044268 118706444 vanA Carbon cycling Carbon degradation Others Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 7.382647059 7.371835819 7.174318675 7.124774605 13421460 obgE Stress Radiation stress Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 7.453647311 7.24471206 6.980046515 7.563378375 20905508 cmuA Organic Remediation Chlorinated solvents Methanosarcina mazei Go1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina mazei; 7.220139047 7.452520173 6.962302996 7.197451374 6.940892839 6.979533971 21239746 BMO Organic Remediation Other Hydrocarbons Pseudomonas butanovora superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 6.872977608 7.285428449 7.073923895 6.779914093 7.645075738 6.880739946 7.317049036 269835912 SMR_antibiotics Antibiotic resistance transporter Vibrio harveyi 1DA3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 7.382386089 7.368609539 7.034085142 7.249032338 260636081 mannanase Carbon cycling Carbon degradation Hemicellulose Prevotella sp. oral taxon 472 str. F0295 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella sp. oral taxon 472; 7.11246653 7.257536662 7.273694961 7.42216796 7.763299058 223040625 grpE Stress Heat shock Campylobacter rectus RM3267 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter rectus; 7.644726003 7.15619659 89357952 ChrA Metal Resistance Chromium Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 7.467421737 7.452943134 7.198130353 7.529627463 7.142289596 7.269326727 91686444 gyrB other category gyrB Burkholderia xenovorans LB400 7.392995608 7.53373901 7.939254752 7.514328076 7.75064392 119357659 SMR_antibiotics Antibiotic resistance transporter Chlorobium phaeobacteroides DSM 266 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 7.538805444 7.848214235 7.391567876 7.669710985 8.063932123 7.806210033 90331497 pimF Organic Remediation Aromatics Aromatic carboxylic acid marine gamma proteobacterium HTCC2207 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.224745783 7.618566499 7.313887649 7.43648844 7.492977926 7.353089762 7.575524956 1001257 Al Metal Resistance Aluminum Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 7.182491306 7.430564935 109702465 pmdAB Organic Remediation Aromatics Others Pseudoalteromonas atlantica T6c 6.958978522 7.010120089 52350379 bglP Stress Glucose limitation Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 7.07414201 7.362745611 189909721 MATE_antibiotic Antibiotic resistance transporter Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira biflexa; 7.071802431 6.995501897 229222135 AceA Carbon cycling Carbon degradation others Nakamurella multipartita DSM 44233 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 7.346133209 7.328595568 7.273078674 7.716771956 220713889 phtA Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.796782936 7.060592464 213987521 pimF Organic Remediation Aromatics Aromatic carboxylic acid Acinetobacter baumannii AB307-0294 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 6.887136365 6.9770271 10863147 nifH Nitrogen Nitrogen fixation marine stromatolite eubacterium HB(0697) C102 superkingdom:Bacteria; 7.194545057 7.444698988 7.54614845 7.580170437 106767168 xylanase Carbon cycling Carbon degradation Hemicellulose Clostridium phytofermentans ISDg superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium phytofermentans; 7.259575494 7.118360566 114561719 arcA Stress Oxygen limitation Shewanella frigidimarina NCIMB 400 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella frigidimarina; 6.956625314 7.052448801 154688034 bglH Stress Glucose limitation Bacillus amyloliquefaciens FZB42 7.486423176 7.551744579 7.250703425 7.583483929 7.537825197 7.483410444 7.58880608 7.650350143 157374554 AceA Carbon cycling Carbon degradation others Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 7.235696754 7.313367901 6.911797292 7.415835158 7.416120241 7.260795891 7.175187153 145235791 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.429036105 7.532929336 8.164700717 156710470 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Hydrogenobaculum sp. Y04AAS1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenobaculum; 7.298328682 7.565856022 110633473 ppx Phosphorus Phosphorus utilization Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 7.226167182 7.286567973 6.942800667 7.129545147 68549339 ppx Phosphorus Phosphorus utilization Pelodictyon phaeoclathratiforme BU-1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 7.675892718 7.708462472 7.307344478 7.783016204 7.882417041 7.745259679 7.762640329 229544324 hly virulence hemolysin Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 6.855224949 7.462944721 6.677516995 6.450587262 62184245 exoglucanase Carbon cycling Carbon degradation Cellulose Verticillium dahliae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Phyllachorales;genus:Verticillium; 7.440575628 7.720545925 6.929307887 7.048547594 148556312 vanA Carbon cycling Carbon degradation Others Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 7.713367815 7.491257861 7.554417296 7.509937199 58039435 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Gluconobacter oxydans 621H superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter oxydans; 7.114528921 7.399554446 7.213488933 7.646922384 167346958 mauAB Organic Remediation Herbicides related compound Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 7.327719125 7.149338031 7.165716188 6.745430973 7.623780794 7.3436498 6.834186376 50727102 endochitinase Carbon cycling Carbon degradation Chitin Microbulbifer hydrolyticus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Microbulbifer; 7.221796408 7.159993787 7.216145142 7.189224517 255502795 nirS Nitrogen Denitrification uncultured bacterium 7.715748511 7.770512133 7.585244301 7.506399546 7.405667618 7.180258561 187718527 katE Stress Oxygen stress Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.433433784 7.235614405 7.109873902 7.357416413 7.715238673 7.406586863 7.266097309 23978280 gyrB other category gyrB Leptolyngbya sp. PCC 7375 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Leptolyngbya; 6.903338278 7.118203625 196183906 gyrB other category gyrB Brevundimonas sp. BAL3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas; 7.635456236 7.437913885 7.526359144 7.759450698 154240550 mcrA Carbon cycling Methane Methane production Methanohalophilus mahii superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanohalophilus; 7.028371248 6.990322518 2257961 ahpC Stress Oxygen stress Sulfolobus metallicus superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus; 7.022591122 6.975637493 115421703 phtA Organic Remediation Aromatics Aromatic carboxylic acid Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 8.281510706 7.997402251 7.51350459 7.667183293 149187881 phn Organic Remediation Herbicides related compound Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 7.044615105 7.362871125 67086685 MFS_antibiotic Antibiotic resistance transporter Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 7.037745981 7.160285857 6.903635211 7.218141971 119864244 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Psychromonas ingrahamii 37 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas;species:Psychromonas ingrahamii; 7.118593434 7.707745181 115372950 TehB Metal Resistance Tellurium Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 7.060619319 7.114839904 85668380 glnA Stress Nitrogen limitation Roseovarius sp. 217 7.270256758 7.487805044 7.593829372 7.322497803 259484897 AceA Carbon cycling Carbon degradation others Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.678793963 7.748637764 6.904023108 7.334502416 7.737460047 7.354302604 7.424182876 54024044 nhh Organic Remediation Aromatics Nitoaromatics Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 7.430359049 7.473717255 7.252368341 7.675310084 7.673284463 7.279712536 7.367040806 256851565 pstB Stress Phosphate limitation Lactobacillus jensenii 27-2-CHN 6.973795056 6.986014186 22299890 nifH Nitrogen Nitrogen fixation Thermosynechococcus elongatus BP-1 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Thermosynechococcus;species:Thermosynechococcus elongatus; 7.060115116 6.796523425 239984815 sigma_70 Stress Sigma factors Mycoplasma conjunctivae superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Mycoplasmatales;family:Mycoplasmataceae;genus:Mycoplasma; 7.325957307 7.121471583 7.174924985 7.520667894 7.159220962 7.070774626 7.080555152 77811093 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Shewanella putrefaciens CN-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella putrefaciens; 6.788755164 7.304136109 6.89616596 6.880086241 7.00908053 172040935 glnA Stress Nitrogen limitation Corynebacterium urealyticum DSM 7109 7.06846169 7.394720692 172040973 glnA Stress Nitrogen limitation Corynebacterium urealyticum DSM 7109 7.013072551 7.47215694 7.669656009 7.141028747 60475984 rubisco Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.723890509 7.858097151 7.9814418 8.314788038 8.40921016 8.186185214 8.483213392 50838773 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.132381993 7.272815214 7.279574459 7.482953765 218518187 sigma_70 Stress Sigma factors Acidithiobacillus ferrooxidans ATCC 23270 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 7.730025957 7.669537409 7.700524133 7.864058834 7.794670833 7.728634214 7.735616592 145206261 SMR_antibiotics Antibiotic resistance transporter Prosthecochloris vibrioformis DSM 265 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeovibrioides; 7.038881776 7.113122859 110831580 pcc Carbon cycling Carbon fixation Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 8.011136457 7.723197713 7.808856451 7.707045822 8.014825363 152025498 hrcA Stress Heat shock Bacillus cereus subsp. cytotoxis NVH 391-98 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cytotoxicus; 7.034728946 7.029462653 1488565 major_capsid_protein Bacteria phage STRUCTURAL Enterobacteria phage SV14 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 6.948195459 7.097389508 142001069 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.133863934 7.074537071 7.33488185 7.247101131 7.052331037 169812031 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 7.358036951 7.347630942 7.428626617 7.614303513 7.106311726 7.510330097 158522191 pcc Carbon cycling Carbon fixation Desulfococcus oleovorans Hxd3 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus;species:Desulfococcus oleovorans; 7.641832615 7.710574457 87199660 pcc Carbon cycling Carbon fixation Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 7.505674925 7.383888089 7.169831377 7.098477169 219547525 glnA Stress Nitrogen limitation Candidatus Methanosphaerula palustris E1-9c 7.028847256 7.138957685 7.121514894 7.441391475 7.258357191 7.370885475 7.392363443 268617377 nrfA Nitrogen Dissimilatory N reduction Sulfurospirillum deleyianum DSM 6946 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Sulfurospirillum;species:Sulfurospirillum deleyianum; 7.138945896 6.900676475 7.004415173 7.169292715 42783090 ppk Phosphorus Phosphorus utilization Bacillus cereus ATCC 10987 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 6.678482478 7.119310732 6.869006057 7.320250813 109647159 dmsA Organic Remediation Others Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 7.124610456 7.37583727 7.138700279 7.256605523 83942422 obgE Stress Radiation stress Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 6.991544548 7.096196773 218392794 glnA Stress Nitrogen limitation Pseudomonas putida GB-1 7.000271612 6.766651606 7.563697266 78168774 sigma_70 Stress Sigma factors Synechococcus sp. CC9902 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.25043496 7.06064926 6.710289234 7.215865322 7.484900388 114193063 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.372095321 7.27154021 7.155885784 6.866012882 7.298878963 6.908599697 7.461489503 76577552 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.082990944 6.915173698 120599500 pimF Organic Remediation Aromatics Aromatic carboxylic acid Shewanella sp. W3-18-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 7.66540613 7.845798819 7.631448254 8.014404012 7.906347405 7.596535582 7.69766293 156047785 pheA Organic Remediation Aromatics Other aromatics Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 7.116244644 7.097148773 255273314 glnA Stress Nitrogen limitation Hyphomicrobium denitrificans ATCC 51888 7.129497587 7.875079617 8.027114604 7.681600418 7.559302484 269216639 SMR_antibiotics Antibiotic resistance transporter Slackia exigua ATCC 700122 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Slackia;species:Slackia exigua; 6.92162847 7.92086159 7.691788493 7.278897956 7.343426302 7.457792473 7.618488305 260771428 pstC Stress Phosphate limitation Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 7.334653102 7.355510246 7.383564274 7.585320418 7.171049035 7.566099333 66267666 nhh Organic Remediation Aromatics Nitoaromatics Pseudomonas sp. K-9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.353578807 7.348820833 151561977 cellobiase Carbon cycling Carbon degradation Cellulose Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 7.321394561 7.366912902 6.904385566 7.421995474 7.462671039 7.250531539 7.420883301 159883182 ArsC Metal Resistance Arsenic Hydrogenivirga sp. 128-5-R1-1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenivirga; 7.350121236 7.192806089 163764774 ctsR Stress Protein stress Bacillus selenitireducens MLS10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus selenitireducens; 6.942472693 7.372184821 6.869346279 7.592630269 7.037093325 7.277918082 91774844 phoB Stress Phosphate limitation Methylobacillus flagellatus KT superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 7.268473451 7.395418724 7.248194399 7.797859876 6.76839269 7.387701833 217077377 sigma_70 Stress Sigma factors Thermosipho africanus TCF52B superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermosipho;species:Thermosipho africanus; 6.95897184 6.860961789 227326206 ahpF Stress Oxygen stress Pectobacterium carotovorum subsp. carotovorum WPP14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 6.749587935 7.397938279 149933036 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Bacteroides vulgatus ATCC 8482 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides vulgatus; 7.514884364 7.42120758 148502383 phtA Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 7.585664119 7.689004134 8.241927593 7.064359212 7.591943747 7.463891326 7.83532091 145205124 sox Sulphur Sulphur oxidation Prosthecochloris vibrioformis DSM 265 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeovibrioides; 6.945317505 6.787795259 7.251985048 7.20402727 7.518688527 146453303 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Lodderomyces elongisporus NRRL YB-4239 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Lodderomyces;species:Lodderomyces elongisporus; 7.093428692 7.320162722 6.945995677 6.763990933 7.596704203 7.433222118 7.464776425 50122083 pstB Stress Phosphate limitation Pectobacterium atrosepticum SCRI1043 7.245848088 7.110595977 7.282905999 7.438132587 78363169 pstA Stress Phosphate limitation Thiomicrospira crunogena XCL-2 7.142208592 7.074969944 256580781 sigma_70 Stress Sigma factors Capnocytophaga ochracea DSM 7271 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga ochracea; 7.235689806 7.378928874 6.984455658 6.767301817 7.086839786 7.08389374 7.313668882 1673682 grpE Stress Heat shock Mycoplasma pneumoniae M129 superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Mycoplasmatales;family:Mycoplasmataceae;genus:Mycoplasma;species:Mycoplasma pneumoniae; 6.97036223 7.141849031 269960574 endochitinase Carbon cycling Carbon degradation Chitin Vibrio harveyi 1DA3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 7.652381348 7.689083277 7.094768162 7.297423277 7.580813212 7.66388121 7.73258738 7.688032496 166861138 amyA Carbon cycling Carbon degradation Starch Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.206634768 7.411696789 7.028278566 6.931763567 117577028 MATE_antibiotic Antibiotic resistance transporter Gramella forsetii KT0803 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Gramella;species:Gramella forsetii; 7.305917315 7.169739711 254460042 CODH Carbon cycling Carbon fixation Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.081816608 7.406449148 241763953 pstA Stress Phosphate limitation Acidovorax delafieldii 2AN 7.505982532 7.559332045 7.719303174 7.37571251 238695399 holin_type_3 Bacteria phage LYSIS Enterobacteria phage JS10 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 6.981787575 6.987643864 219952907 fnr Stress Oxygen stress Methylobacterium nodulans ORS 2060 7.283043648 7.364130495 7.260404105 6.883399834 7.648607559 7.430936642 6.783816081 160935850 sigma_24 Stress Sigma factors Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 7.266031626 7.202386891 165880017 exoglucanase Carbon cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.489713006 7.305238759 221737772 cspA Stress Cold shock Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 6.726730479 7.418266713 239826003 ahpC Stress Oxygen stress Geobacillus sp. WCH70 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.54670533 7.600238421 7.584726592 7.506245507 53854901 gyrB other category gyrB Chlorella virus Marburg 1 family:Phycodnaviridae;genus:Chlorovirus; 7.687051986 7.286519332 6.70119316 7.382836889 7.564640951 46241266 exoglucanase Carbon cycling Carbon degradation Cellulose Nectria haematococca mpVI superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 7.687649535 7.814722295 7.388060203 7.963918602 7.803971948 7.728022008 7.823071788 262211408 pilin virulence pilin Comamonas testosteroni CNB-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 6.785577193 7.198098081 7.053475448 6.786857859 7.505746681 6.962667853 7.221504913 62085702 gyrB other category gyrB Gordonia sp. CC-AB07 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 7.647394592 7.3726814 7.937057469 7.212605157 7.299211176 8.030818073 68057404 ZitB Metal Resistance Zinc Haemophilus influenzae 86-028NP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus influenzae; 7.148966538 7.263940616 7.186772893 7.177645619 7.371595139 89088761 phoA Stress Phosphate limitation Bacillus sp. NRRL B-14911 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.289655869 7.110800606 7.473475541 7.037114709 24198167 phoB Stress Phosphate limitation Leptospira interrogans serovar Lai str. 56601 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira interrogans; 6.964531793 6.937562442 6.666697146 6.633250201 7.439510755 212557983 cytochrome Energy process Energy process Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 7.09688082 7.128084483 220712313 PobA Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.084982898 6.997790022 6.778879529 7.388766044 6.752808336 7.178282509 218152427 cytochrome Energy process Energy process Desulfovibrio salexigens DSM 2638 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio salexigens; 7.235503041 7.183970999 210155286 tutFDG Organic Remediation Aromatics BTEX and related aromatics Clostridium hiranonis DSM 13275 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hiranonis; 7.249382154 7.032445485 24983460 xylC Organic Remediation Aromatics BTEX and related aromatics Pseudomonas putida KT2440 6.649291711 7.276665543 7.013728105 7.015777383 6.843791925 148850391 Al Metal Resistance Aluminum Bacillus sp. SG-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 6.750580257 7.489830448 119944428 pimF Organic Remediation Aromatics Aromatic carboxylic acid Psychromonas ingrahamii 37 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas;species:Psychromonas ingrahamii; 6.794853942 6.937781177 56312681 CusA Metal Resistance Copper Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 7.522216816 7.567494829 81246401 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Shigella boydii Sb227 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Shigella;species:Shigella boydii; 7.218710748 7.508880014 7.009025752 6.762471404 7.652453054 7.170928433 7.162452751 7.04984406 195931873 Catechol Organic Remediation Aromatics Other aromatics Gordonia desulfuricans superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 6.84048037 7.463216869 7.144341702 7.47599408 110679689 narJ Stress Oxygen limitation Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 7.236449776 7.490802287 7.398258968 7.316775363 7.054672327 7.498059984 7.494303124 220932452 amyA Carbon cycling Carbon degradation Starch Halothermothrix orenii H 168 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Halanaerobiales;family:Halanaerobiaceae;genus:Halothermothrix;species:Halothermothrix orenii; 7.236630937 7.325208586 30171257 amoA Nitrogen Nitrification superkingdom:Bacteria; 7.617524009 7.552730446 7.024002625 7.848431009 7.70443587 7.492056055 7.366288601 7.691878375 109698813 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 7.276846217 7.590138822 7.390565325 7.108500834 7.895302959 7.219884306 7.077463685 29652604 narG Nitrogen Denitrification uncultured bacterium 7.32670784 7.470987153 7.409820786 7.209095602 7.155777528 7.441092285 7.795789311 149191841 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 7.141634411 7.344744425 7.312478448 7.831868125 7.448588016 7.2273492 7.508177624 222100698 hrcA Stress Heat shock Thermotoga neapolitana DSM 4359 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga;species:Thermotoga neapolitana; 7.345875539 7.187865507 6.744082742 7.421858332 240148870 oxyR Stress Oxygen stress Corynebacterium glutamicum superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium; 6.915692549 6.907527589 218240698 glnR Stress Nitrogen limitation Alicyclobacillus acidocaldarius LAA1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 7.345081153 7.628393178 7.736613126 7.512473181 7.606491757 7.725814955 7.879299874 125624073 ArsA Metal Resistance Arsenic Lactococcus lactis subsp. cremoris MG1363 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Lactococcus;species:Lactococcus lactis; 7.062792263 7.524581177 7.094783431 7.87945663 7.434504175 7.769391995 89358404 nitA Organic Remediation Aromatics Other aromatics Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 7.528566075 7.22252129 7.111193722 7.441359864 7.61112118 7.722537596 7.343032215 7.477637156 225173409 Tet Antibiotic resistance other Desulfonatronospira thiodismutans ASO3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfonatronospira;species:Desulfonatronospira thiodismutans; 7.053635475 6.962921631 159898548 nmoA Organic Remediation Aromatics Nitoaromatics Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 7.41611435 7.148766941 7.183413761 7.646020737 6.950439481 7.434170398 77019936 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus erythropolis PR4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 7.750005745 7.390137068 7.945126011 7.89470261 7.98692954 8.079792341 7.504875575 118434925 pcpE Organic Remediation Herbicides related compound Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 7.238047725 7.001119081 221311622 ureC Nitrogen Ammonification Bacillus subtilis subsp. subtilis str. 168 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 7.292543746 7.057554831 78045868 linB Organic Remediation Pesticides related compound Xanthomonas campestris pv. vesicatoria str. 85-10 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas euvesicatoria; 7.581180774 7.780487503 7.890354769 91714606 AceA Carbon cycling Carbon degradation others Shewanella denitrificans OS217 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella denitrificans; 6.993343116 7.252943992 197790822 ZitB Metal Resistance Zinc Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 7.165237247 7.279475415 220712098 CopA Metal Resistance Copper Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.46444502 7.115365605 6.987161947 8.005865496 209486531 mcrA Carbon cycling Methane Methane production uncultured archaeon superkingdom:Archaea; 7.101641268 7.329598086 7.091718605 6.868662656 75703982 nifH Nitrogen Nitrogen fixation Anabaena variabilis ATCC 29413 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena variabilis; 7.267736076 7.23712019 7.202574162 7.845016177 7.778242623 7.509072969 46579864 alkK Organic Remediation Others Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 7.643375133 7.548143669 7.800099764 7.507919209 109455375 alkK Organic Remediation Others Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 7.152738941 7.182725569 99030601 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 7.455014416 7.299965356 118436078 ureC Nitrogen Ammonification Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 7.466018021 7.475630359 110630646 nifH Nitrogen Nitrogen fixation uncultured soil bacterium superkingdom:Bacteria; 7.243929443 7.095103649 7.07824655 6.803999075 56420137 pimF Organic Remediation Aromatics Aromatic carboxylic acid Geobacillus kaustophilus HTA426 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus kaustophilus; 7.319136918 7.523538032 7.78428439 7.337598968 7.495358398 7.351599167 225388546 sigma_70 Stress Sigma factors Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 7.222035821 7.134207798 116223520 sigma_24 Stress Sigma factors Candidatus Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 7.52302764 7.3792541 7.443556005 7.819390857 7.697032561 7.63549453 7.730221446 149186396 mer Metal Resistance Mercury Erythrobacter sp. SD-21 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 7.563070335 7.650507599 7.615289396 7.615219167 7.918528437 8.007985984 7.961089968 8.31709767 62131452 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 7.142002061 7.613494015 7.106237287 7.172872299 8.099146619 7.285474722 7.334093438 207367115 mnp Carbon cycling Carbon degradation Lignin Lentinula edodes superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Lentinula; 7.406954632 7.474447037 7.281586585 7.548398318 7.469829401 7.236076343 7.200189285 7.453777236 199652804 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.257457958 7.242316834 189345922 pstB Stress Phosphate limitation Chlorobium limicola DSM 245 7.305215382 7.165478941 6.959926946 7.352660345 7.757460738 7.541364166 7.208608551 7.591482531 115381156 gyrB other category gyrB Mesoplasma seiffertii 7.203809742 7.054720459 1001835 nitA Organic Remediation Aromatics Other aromatics Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 7.217732675 7.067112042 6.801479422 7.616250519 27354902 MFS_antibiotic Antibiotic resistance transporter Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.52282798 7.806836888 7.459710808 7.538507961 7.288996354 7.275423253 212011152 MFS_antibiotic Antibiotic resistance transporter Coxiella burnetii CbuG_Q212 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Coxiellaceae;genus:Coxiella;species:Coxiella burnetii; 6.57447054 7.341776435 254489467 AceA Carbon cycling Carbon degradation others Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.474508217 7.698028933 7.612994569 7.221157465 7.563497093 7.343919446 7.243965968 212669354 CopA Metal Resistance Copper Bacteroides finegoldii DSM 17565 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides finegoldii; 6.70907564 7.081365651 71365811 gyrB other category gyrB Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 7.752270386 7.473434154 7.599390582 7.395120122 7.474621853 7.56725677 7.725384295 157781471 groEL Stress Heat shock Enterococcus italicus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus; 6.823183933 6.992209027 18403095 FTHFS Carbon cycling Acetogenesis Arabidopsis thaliana superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Streptophyta;order:Brassicales;family:Brassicaceae;genus:Arabidopsis; 6.912078821 7.071471193 148873735 pilin virulence pilin Vibrio cholerae 623-39 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 7.085335487 7.080852722 71065463 pimF Organic Remediation Aromatics Aromatic carboxylic acid Psychrobacter arcticus 273-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter arcticus; 7.27157286 7.114078367 152974222 TerC Metal Resistance Tellurium Bacillus cereus subsp. cytotoxis NVH 391-98 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cytotoxicus; 7.000160209 7.235041775 210149585 bglP Stress Glucose limitation Clostridium nexile DSM 1787 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium nexile; 7.213425353 7.193931467 7.200540761 7.607544942 7.19106319 7.264213848 7.27413818 213498003 pstC Stress Phosphate limitation Serratia sp. ATCC 39006 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 7.559908836 7.430396711 7.582249363 7.583067188 7.901070805 7.9200118 8.030906642 111036254 xylC Organic Remediation Aromatics BTEX and related aromatics Pseudomonas putida 6.837464973 7.1801437 6.802523365 6.827039105 7.302422564 6.965169326 7.200778788 241460739 BchY other category chlorophyllide reductase Allochromatium vinosum DSM 180 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 7.451441278 7.737629317 7.987727126 7.342249421 8.089207992 7.537769621 7.758581514 94552219 glnA Stress Nitrogen limitation Candidatus Koribacter versatilis Ellin345 7.315995127 7.101926577 7.134368086 7.271038066 169811933 AceB Carbon cycling Carbon degradation others Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 7.188391932 7.156277329 253987042 fnr Stress Oxygen stress Methylovorus sp. SIP3-4 7.134002674 7.124204303 255326825 narH Stress Oxygen limitation Rothia mucilaginosa ATCC 25296 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Rothia;species:Rothia mucilaginosa; 7.519552276 7.553192678 7.383783091 7.503557839 7.321753392 7.322835808 211586683 CopA Metal Resistance Copper Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 7.299038161 7.10085757 7.024949253 7.064734761 217505240 CadA Metal Resistance Cadmium Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 7.121953477 7.158347248 57471279 sigma_70 Stress Sigma factors Chryseobacterium indologenes superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Chryseobacterium; 6.94940007 6.858243183 34396715 sigma_70 Stress Sigma factors Porphyromonas gingivalis W83 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas;species:Porphyromonas gingivalis; 7.267438438 7.304542252 6.825317028 7.423627495 260644954 Tet Antibiotic resistance other Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 7.631784574 7.496041719 197288186 Arylest Organic Remediation Aromatics Other aromatics Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 7.32195962 7.310538721 62288758 terminase_large_subunit Bacteria phage REPLICATION Enterobacteria phage RB43 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.364576436 7.307769336 7.051369515 6.913569363 7.103406217 7.63814866 152981997 phtA Organic Remediation Aromatics Aromatic carboxylic acid Janthinobacterium sp. Marseille 7.352781552 7.522528724 7.315775037 7.127779178 7.247796188 6.750362993 7.321252267 119226174 gyrB other category gyrB Rhodococcus erythropolis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7.723663967 7.836870698 7.836607505 7.720335921 7.684629276 7.730761777 7.714984226 256370937 rubisco Carbon cycling Carbon fixation Acidimicrobium ferrooxidans DSM 10331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Acidimicrobiales;family:Acidimicrobiaceae;genus:Acidimicrobium;species:Acidimicrobium ferrooxidans; 7.381602768 7.477302327 33620434 helicase_family_1_Dda_like Bacteria phage REPLICATION Enterobacteria phage RB49 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.520280165 7.489943924 7.393273251 7.298421022 113880710 sigma_70 Stress Sigma factors Synechococcus sp. CC9311 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.40880612 7.202877042 6.846057491 7.474412948 7.593175176 7.494198889 229477445 B_lactamase_C Antibiotic resistance Beta-lactamases Planctomyces limnophilus DSM 3776 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces limnophilus; 7.311685645 7.488693955 7.229517173 6.991098876 7.45938104 7.361571546 7.105672675 7.868093853 71370777 glnA Stress Nitrogen limitation uncultured cyanobacterium 6.984793914 7.187732486 154352659 grpE Stress Heat shock Bacillus amyloliquefaciens FZB42 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 7.254892156 6.916642851 108758734 fnr Stress Oxygen stress Myxococcus xanthus DK 1622 7.650430664 7.636937477 7.519955055 7.612431599 7.622937372 8.040703339 33635682 fnr Stress Oxygen stress Prochlorococcus marinus str. MIT 9313 7.005090957 6.9914231 193201217 helicase_family_4 Bacteria phage REPLICATION Yersinia phage Yepe2 7.651748111 7.437122349 229763247 cellobiase Carbon cycling Carbon degradation Cellulose Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 8.044047308 8.255727317 7.681943803 7.991913944 7.736440204 8.163192732 7.640333572 170748717 NiR Nitrogen Assimilatory N reduction Methylobacterium radiotolerans JCM 2831 7.958154929 8.006354398 8.089018007 8.016203179 8.306097561 8.069368377 8.198060164 225196699 pstC Stress Phosphate limitation Desulfonatronospira thiodismutans ASO3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfonatronospira;species:Desulfonatronospira thiodismutans; 7.350448935 7.239900402 91788241 ahpC Stress Oxygen stress Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 7.480393204 7.772240266 7.231035762 7.42560777 7.351139086 99081102 pstC Stress Phosphate limitation Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8.153735558 7.920027623 7.891687996 7.770460051 7.591564977 7.662617227 118618301 SMR_antibiotics Antibiotic resistance transporter Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 7.094664005 7.006627417 6.913344703 7.090040278 7.180570377 6.926311472 218767220 cap virulence capsule Neisseria meningitidis Z2491 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria meningitidis; 7.354322262 7.106989724 262197284 fnr Stress Oxygen stress Haliangium ochraceum DSM 14365 7.522672308 7.374109203 7.516030391 7.098039496 114777621 ppx Phosphorus Phosphorus utilization Mariprofundus ferrooxydans PV-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Zetaproteobacteria;order:Mariprofundales;family:Mariprofundaceae;genus:Mariprofundus;species:Mariprofundus ferrooxydans; 7.141677509 7.023056612 206603948 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 7.311984414 7.121838776 6.965866549 7.388984962 226227771 pstS Stress Phosphate limitation Gemmatimonas aurantiaca T-27 superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 7.237727431 7.681594361 7.678504777 7.910896011 7.293307576 7.613358772 118692144 dmsA Organic Remediation Others Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 6.855169825 7.296257994 7.122814471 7.372467211 227516425 gdh Nitrogen Ammonification Atopobium vaginae DSM 15829 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Atopobium;species:Atopobium vaginae; 6.998605611 6.922414947 283570710 sigma_24 Stress Sigma factors Desulfovibrio sp. FW1012B superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 7.724081087 8.400573621 8.047613963 8.238789084 8.201848524 13517047 gyrB other category gyrB marine CFB-group bacterium MBIC04475 superkingdom:Bacteria;phylum:Bacteroidetes; 7.610859686 7.328876388 7.101635631 7.536938884 262086400 hrcA Stress Heat shock Gordonia bronchialis DSM 43247 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 7.242461669 7.786007746 7.426537715 7.96741714 7.730403136 7.900998274 7.807863592 151575135 CopA Metal Resistance Copper Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 7.067389491 7.003381421 164708940 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.287444266 7.221830386 86361256 fnr Stress Oxygen stress Rhizobium etli CFN 42 7.174597828 7.144134076 229339770 iro virulence Vibrio cholerae TM 11079-80 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 7.078819662 6.818737346 6.765726322 6.696977602 7.364439296 2622862 pstB Stress Phosphate limitation Methanothermobacter thermautotrophicus str. Delta H 7.034457702 7.246930769 167366004 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8.137947131 7.76681668 7.288904697 7.6906613 7.43693507 7.535534032 7.413762077 56180310 sigma_70 Stress Sigma factors Idiomarina loihiensis L2TR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina loihiensis; 6.971614529 7.251225719 6.886170821 7.485509711 7.06207169 7.00198016 7.472048095 255257755 fnr Stress Oxygen stress Thermoanaerobacterium thermosaccharolyticum DSM 571 7.068950406 7.506060193 213157267 iro virulence Acinetobacter baumannii AB0057 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 6.99167787 7.169692258 6.778293866 7.372184401 134299986 CopA Metal Resistance Copper Desulfotomaculum reducens MI-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum reducens; 7.031070623 7.2100376 6.875231691 6.685042981 7.384985523 78042621 alkK Organic Remediation Others Carboxydothermus hydrogenoformans Z-2901 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Carboxydothermus;species:Carboxydothermus hydrogenoformans; 6.824341597 7.260936102 214045218 sox Sulphur Sulphur oxidation Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.333436458 7.771943887 7.514830451 7.86480273 7.991202786 7.776664827 7.315180726 6752869 fnr Stress Oxygen stress Actinobacillus sp. CCUG 19799 7.232609766 7.842138938 7.336745651 7.79161617 7.271072096 7.24733092 7.698824118 219549420 napA Nitrogen Dissimilatory N reduction Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.419546696 7.615887041 7.74753175 7.667490427 7.922725685 85694656 hly virulence hemolysin Idiomarina baltica OS145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina baltica; 7.093070332 7.21738998 6.747885863 7.433596847 92392682 ppx Phosphorus Phosphorus utilization Psychrobacter cryohalolentis K5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter cryohalolentis; 7.002200269 7.09213016 6.965563003 6.828481571 189207002 ara_fungi Carbon cycling Carbon degradation Hemicellulose Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7.459922408 7.603401884 7.333022277 7.66225979 7.423045638 7.250109289 92112314 ahpC Stress Oxygen stress Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 7.112162784 7.178962456 6.86653424 7.374158764 4028021 dsrB Sulphur sulfite reductase Desulfotomaculum thermocisternum 7.231626239 7.425539976 6.993845959 7.359071261 7.06915313 6.941260524 7.379855112 167353193 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Shewanella halifaxensis HAW-EB4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella halifaxensis; 7.423530787 7.333751104 116098081 cadBD Metal Resistance Cadmium Lactobacillus brevis ATCC 367 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus brevis; 7.329126406 7.087514658 7.151678341 7.023846964 6118006 holin_type1 Bacteria phage LYSIS Acyrthosiphon pisum bacteriophage APSE-1 order:Caudovirales;family:Podoviridae; 7.266271497 7.525565564 7.335904405 7.523116569 7.925911327 7.569882948 7.329097574 7.533360376 73487247 rubisco Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.420478686 7.131372497 7.200318332 7.596079525 7.206841663 7.297434333 229447156 pstB Stress Phosphate limitation Bacteroides sp. D1 7.867399534 7.176458247 7.144647469 7.09303529 7.303040634 7.246490743 40063004 phtA Organic Remediation Aromatics Aromatic carboxylic acid uncultured bacterium 560 superkingdom:Bacteria; 7.013121235 7.096262184 218782660 silC Metal Resistance Silver Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 7.473658896 7.093600663 6.960089777 7.213681174 7.5995246 7.277039659 7.443134584 32478376 nosZ Nitrogen Denitrification uncultured soil bacterium superkingdom:Bacteria; 6.844153762 7.010538551 262299257 phoB Stress Phosphate limitation Acinetobacter radioresistens SH164 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter radioresistens; 7.180651108 7.355061109 6.940062568 7.207746467 7.099784426 7.027266355 7.474095584 184196880 ChrA Metal Resistance Chromium Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.71133702 7.84195577 7.737730147 8.219218022 8.166392892 7.779582913 7.868155843 114564697 cytochrome Energy process Energy process Shewanella frigidimarina NCIMB 400 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella frigidimarina; 6.975306673 7.344492007 7.334390706 6.868080081 6.975432405 7.047536419 83757406 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Salinibacter ruber DSM 13855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 7.337120754 7.961281768 7.36379148 7.302829281 7.785757893 7.414965826 7.439465667 7.564633766 212640016 cda Carbon cycling Carbon degradation Starch Anoxybacillus flavithermus WK1 7.11140808 7.03583797 22023056 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 6.987511154 7.336274846 7.470846974 7.035678451 190571986 nbzA Organic Remediation Aromatics Nitoaromatics Comamonas sp. CNB-1 6.942071236 6.817104542 6.946137107 7.333722522 167624124 cytochrome Energy process Energy process Shewanella halifaxensis HAW-EB4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella halifaxensis; 7.002606661 7.424659798 86358307 nagK Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.096327814 8.459542469 8.489184198 8.282024878 8.082762701 8.225263761 8.034272973 196020972 cap virulence capsule Bacillus cereus 03BB108 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 7.478008997 7.060480748 241773720 pcc Carbon cycling Carbon fixation Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 6.819885279 7.1545704 7.123656321 7.186320094 154083454 amyA Carbon cycling Carbon degradation Starch Bifidobacterium adolescentis L2-32 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium adolescentis; 7.095474 7.158811828 6.966318038 7.413565105 62184838 obgE Stress Radiation stress Chlamydophila abortus S26/3 superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Chlamydiaceae;genus:Chlamydophila;species:Chlamydophila abortus; 6.986310861 7.020393109 6.704540646 7.517132812 7.155954208 6.930235659 90414364 katE Stress Oxygen stress Photobacterium profundum 3TCK superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 7.22528973 7.05481439 6.989711099 7.033087066 7.449082245 7.157440361 7.230794603 7.27258784 113903879 pcc Carbon cycling Carbon fixation Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 7.538677493 7.581334403 7.558055493 7.294276316 7.29509728 7.312059139 229916348 hrcA Stress Heat shock Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 7.651949565 7.738869704 7.417914957 7.785616769 58265590 tfdA Organic Remediation Aromatics Chlorinated aromatics Cryptococcus neoformans var. neoformans JEC21 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Tremellomycetes;order:Tremellales;family:Tremellaceae;genus:Filobasidiella;species:Filobasidiella neoformans; 7.462591722 7.388942565 7.125634065 7.416364106 7.655679362 7.439570269 7.020027346 146269651 clpC Stress Protein stress Dehalococcoides sp. BAV1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.116323635 7.357792035 54302024 phoA Stress Phosphate limitation Photobacterium profundum SS9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 7.111534095 7.485403839 28898313 ZntA Metal Resistance Zinc Vibrio parahaemolyticus RIMD 2210633 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.218593878 7.442719518 222354262 hao Nitrogen Nitrification uncultured bacterium superkingdom:Bacteria; 7.590394347 7.807272622 7.239418043 7.911440468 7.684163439 7.860701886 7.609215933 15788879 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 6.854919371 7.138683897 7.034216872 6.508861724 7.549069368 6.864711535 7.264299597 178464621 SMR_antibiotics Antibiotic resistance transporter Streptomyces griseus subsp. griseus NBRC 13350 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 6.67145286 7.419616849 57018770 napA Nitrogen Dissimilatory N reduction Campylobacter lari RM2100 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter lari; 6.789440658 7.131946251 6.812511709 7.141343181 71849135 SMR_antibiotics Antibiotic resistance transporter Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 6.89907981 7.097523289 7.626282099 7.408227832 7.236233007 61808044 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.128297417 7.411391302 6.891960718 7.815964915 7.117714995 7.114416049 148242464 pstB Stress Phosphate limitation Synechococcus sp. RCC307 7.393537803 7.330739197 7.178424598 7.727049358 6.984510413 6.976006772 7.311791003 157681750 pstA Stress Phosphate limitation Bacillus pumilus SAFR-032 6.986568097 7.131774417 41324486 katE Stress Oxygen stress Corynebacterium glutamicum ATCC 13032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 7.387722238 7.239800159 157404591 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.104214453 7.5725596 197625046 alkH Organic Remediation Other Hydrocarbons Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 7.294823694 7.183339804 7.569974094 7.644887822 7.36929135 7.479791212 iegAssA22 AssA Carbon cycling Carbon degradation Others 7.524764579 7.357622317 7.82318457 7.089590459 7.334897364 7.156631407 7.520613545 194682925 ppx Phosphorus Phosphorus utilization Proteus mirabilis HI4320 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 7.294981143 7.315709243 7.167356793 7.749860246 227295596 nplT Carbon cycling Carbon degradation Starch Lysinibacillus sphaericus 7.170917703 7.257513422 71558100 nmoA Organic Remediation Aromatics Nitoaromatics Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 7.013229102 7.128991833 7.005755113 7.181641797 116662417 ChrA Metal Resistance Chromium Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.377211705 7.346044587 6.878984296 6.762088803 99030555 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 7.671451527 7.177910838 7.220244285 7.384626354 157150044 trzA Organic Remediation Herbicides related compound Streptococcus gordonii str. Challis substr. CH1 7.047299283 7.413602611 126729428 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 7.856558397 7.668153563 7.765277025 7.431925241 7.835910545 218750986 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.060122935 7.478904452 7.214805137 7.585861959 7.543306512 8.120781828 7.554089705 184157817 ChrA Metal Resistance Chromium Acinetobacter baumannii ACICU superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 7.405476532 7.550825966 7.377458638 7.839452797 72118774 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.294988651 7.348923459 7.555713831 7.450679338 7.517779801 7.527705486 7.904765263 171991001 ChrA Metal Resistance Chromium Exiguobacterium sibiricum 255-15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 7.642376131 7.248767953 7.617672769 7.65286766 7.465756599 50123272 CopA Metal Resistance Copper Erwinia carotovora subsp. atroseptica SCRI1043 7.162901751 7.02732589 83776226 xylanase Carbon cycling Carbon degradation Hemicellulose Aspergillus oryzae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 7.109272561 7.39852434 7.394002951 7.763145861 262087447 grpE Stress Heat shock Gordonia bronchialis DSM 43247 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 7.525677144 7.197483479 77378757 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 6.979382204 7.204588056 218289159 glnA Stress Nitrogen limitation Alicyclobacillus acidocaldarius LAA1 7.656047335 7.513033311 7.243021795 7.538481583 7.759457948 7.528007312 7.59948706 7.595389045 254579312 AceB Carbon cycling Carbon degradation others Zygosaccharomyces rouxii superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Zygosaccharomyces;species:Zygosaccharomyces rouxii; 7.370267319 7.234725148 7.26214802 7.100753544 90418939 pstB Stress Phosphate limitation Aurantimonas manganoxydans SI85-9A1 8.055456028 7.73400091 7.127535068 8.17256975 7.424400536 7.779781591 151337029 catB Organic Remediation Aromatics BTEX and related aromatics Thermus aquaticus superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus; 7.709374535 8.77443166 8.455100735 8.308058466 8.062313282 270276556 hly virulence hemolysin Bifidobacterium gallicum DSM 20093 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 7.412060287 7.197260126 7.253295664 7.109239848 7.742364918 151587079 CadA Metal Resistance Cadmium Halorubrum lacusprofundi ATCC 49239 7.095978471 7.345722787 122090848 TerC Metal Resistance Tellurium Yersinia enterocolitica subsp. enterocolitica 8081 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 7.609784385 7.377632145 83727244 phn Organic Remediation Herbicides related compound Ralstonia solanacearum UW551 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 7.368439125 7.567239622 7.739872892 7.858756438 7.757785967 33563839 alkK Organic Remediation Others Bordetella pertussis Tohama I superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella pertussis; 7.402408624 7.303445997 7.186521058 7.363547273 7.603953228 7.174292719 7.128291197 726132 mnp Carbon cycling Carbon degradation Lignin 7.040972352 7.179596419 260900587 katE Stress Oxygen stress Vibrio parahaemolyticus AQ4037 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 6.937616485 6.659425019 7.784849919 229500386 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 6.966821729 6.818057164 7.294577414 94471035 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.705338791 7.448886307 7.496228533 7.381024122 7.420212604 7.305781098 7.488089607 68342641 linB Organic Remediation Pesticides related compound Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.80764284 7.470914721 7.527933088 8.006198868 7.83987176 7.458473288 7.692415597 7.658224053 83404780 nirS Nitrogen Denitrification uncultured organism 7.035179979 7.707235643 7.620191092 7.13789301 8.183665831 7.16407343 7.021175863 7.39021681 60475944 rubisco Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.098767458 7.805433094 7.830379125 7.720129361 7.624432804 7.616158468 83701118 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.209097199 7.058765195 6.79418772 7.297255009 156631762 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 7.210041171 7.623813856 6.764661448 7.387608792 149187657 pstC Stress Phosphate limitation Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 6.947435786 7.182342127 7.121359054 7.722643799 228472972 obgE Stress Radiation stress Capnocytophaga gingivalis ATCC 33624 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga gingivalis; 7.279414677 7.124287259 6.939666793 7.17065327 56709186 pimF Organic Remediation Aromatics Aromatic carboxylic acid Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 6.971737234 7.432977889 7.313624523 7.378467855 218701707 iro virulence Escherichia coli IAI39 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 7.410209029 7.464335687 255097686 glnA Stress Nitrogen limitation Mycobacterium tuberculosis KZN 605 6.966032396 7.047876376 6.711932142 7.356789905 117924838 pstA Stress Phosphate limitation Magnetococcus sp. MC-1 7.58706929 7.490217606 223962313 sigma_70 Stress Sigma factors Holdemania filiformis DSM 12042 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichi;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Holdemania;species:Holdemania filiformis; 6.760191254 6.905126032 88643125 dsrA Sulphur sulfite reductase uncultured prokaryote 6.986855683 6.899030313 151563512 sigma_24 Stress Sigma factors Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 7.083160917 6.996120188 6.708488766 6.861274095 7.36130531 7.314735401 6.980206874 7.218648157 179343233 hrcA Stress Heat shock Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 7.830790711 7.65526298 7.951703459 7.558647008 7.512919295 7.718867809 7.54068458 1085099 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira; 6.813766889 7.556305863 34105356 alkK Organic Remediation Others Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 6.886881849 7.053260086 6.952130702 6.98258573 29466072 norB Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.012189427 6.944296365 6.710519309 7.414771819 240296666 sigma_70 Stress Sigma factors Actinobacillus minor NM305 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus minor; 6.941778815 6.988327357 227369236 fnr Stress Oxygen stress Chryseobacterium gleum ATCC 35910 7.454400863 7.461122177 99083091 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 6.729494664 6.924947773 77869353 ppx Phosphorus Phosphorus utilization Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 7.819329665 7.55719911 7.730325077 7.572874077 7.80832996 7.285891106 7.246284554 187718228 nhh Organic Remediation Aromatics Nitoaromatics Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8.136369798 7.911493455 7.423727784 8.08287884 7.811150326 7.66906977 7.529559344 8.04716246 247547084 fnr Stress Oxygen stress Paenibacillus sp. JDR-2 7.612817683 7.601530617 69933852 ChrA Metal Resistance Chromium Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 7.569193206 7.233957468 7.747895275 7.447266609 7.28564621 7.690011412 7.488732932 119712181 mer Metal Resistance Mercury Sulfolobus solfataricus superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus; 7.292109875 7.027422818 6.961314545 7.682927797 7.550446556 7.484602361 7.18609599 7.675098759 90324339 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Photobacterium profundum 3TCK superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 7.179607807 7.010634168 116333111 ppx Phosphorus Phosphorus utilization Lactobacillus brevis ATCC 367 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus brevis; 7.002672693 7.646304178 6.833635332 7.526279009 224552376 pilin virulence pilin Acidovorax citrulli superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 6.72098105 7.408833551 238696602 cda Carbon cycling Carbon degradation Starch Yersinia kristensenii ATCC 33638 7.224804905 7.209891378 6.737251998 7.423110529 124515913 protein_tyrosine_phosphatase_EPS Bioleaching EPS Leptospirillum sp. Group II UBA 7.126246423 7.391300138 7.280792589 7.133764719 73542040 ChrA Metal Resistance Chromium Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 6.793250272 7.554514537 91708512 silC Metal Resistance Silver Methylobacillus flagellatus KT superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 7.578889571 7.674284616 7.746112235 7.666440694 7.396194384 7.701089552 8.291212733 260430614 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 7.271274522 7.753341608 262276577 grpE Stress Heat shock Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;species:Grimontia hollisae; 8.079093403 7.52335859 7.897900039 8.03154077 7.917443068 7.755550089 8.065543637 73533907 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 6.801969118 7.031890847 229611250 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium 7.377764496 7.052271354 13475537 fnr Stress Oxygen stress Mesorhizobium loti MAFF303099 7.102596916 7.710207112 7.693502224 7.822622096 7.355894643 7.173875382 119767015 pimF Organic Remediation Aromatics Aromatic carboxylic acid Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 7.044982579 7.227357602 7.036696689 6.832412314 161328782 pstB Stress Phosphate limitation Shewanella benthica KT99 7.395239809 7.389825165 113867722 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 7.287869863 7.533579185 7.166831972 7.719675377 7.72838345 7.626375135 7.429651023 154686759 pstS Stress Phosphate limitation Bacillus amyloliquefaciens FZB42 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 7.406810341 7.19106269 110680566 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 7.313500627 7.631044698 24376461 dnaK Stress Heat shock Streptococcus mutans UA159 6.683912778 6.923106788 251788013 AceB Carbon cycling Carbon degradation others Dickeya zeae Ech1591 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 7.370221932 7.37167656 7.297460914 7.926043183 7.029864675 7.160069492 121495570 narG Nitrogen Denitrification uncultured bacterium 7.388451162 7.408091984 7.846346371 7.64307544 7.483111267 56312225 nagK Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 8.355360637 8.045660207 7.879611068 7.711651241 7.963519255 8.385352387 7.721288745 56962111 alkH Organic Remediation Other Hydrocarbons Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 6.898269292 7.272642738 7.241729315 7.597955221 6.870650731 7.245196933 168801173 nagI Organic Remediation Aromatics Aromatic carboxylic acid Escherichia coli O157:H7 str. EC508 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 7.00528382 7.18372892 149232835 TerZ Metal Resistance Tellurium Pedobacter sp. BAL39 7.28180338 7.033090694 116061978 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.586867508 7.361508774 7.254024133 7.426548954 91787998 nagI Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 7.396157798 7.186559158 109452417 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.316278322 7.035436949 7.316807419 7.092747023 90406942 CopA Metal Resistance Copper Psychromonas sp. CNPT3 7.154658878 7.017279939 6.940323976 7.182274978 28864397 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.197642262 6.949784527 39984438 CopA Metal Resistance Copper Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 7.584669669 7.557538781 7.523483755 7.795596913 7.528372454 7.711045221 8.106259983 62318458 F1F0_ATP_synthase Bioleaching other category Acidithiobacillus ferrooxidans 7.814687906 7.600846306 7.627476916 8.020470916 8.08532027 7.998048279 7.852685138 219720543 iro virulence Stenotrophomonas sp. SKA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 6.72382779 7.444722782 138894929 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Geobacillus thermodenitrificans NG80-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermodenitrificans; 7.12726383 7.028937921 47093236 CopA Metal Resistance Copper Listeria monocytogenes str. 4b H7858 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria monocytogenes; 7.415962912 7.574238831 7.528544922 7.648345009 7.416363926 7.159169977 77743212 CODH Carbon cycling Carbon fixation Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.553288961 7.864648781 8.174134749 7.551251268 8.081682546 7.364631951 7.359916383 7.855446121 163815603 glnA Stress Nitrogen limitation Coprococcus eutactus ATCC 27759 7.09611458 7.422931505 6.62644308 7.41475523 24981384 czcC Metal Resistance "Cadmium,Cobalt,Zinc" Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.709651377 7.18112811 6.964212155 7.532689583 70986957 cellobiase Carbon cycling Carbon degradation Cellulose Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 7.227161016 7.131153827 145638520 oxyR Stress Oxygen stress Haemophilus influenzae PittII superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus influenzae; 7.06319643 6.958478842 7.091061019 6.696957731 7.515603701 7.109935758 6.864229168 196175687 ppx Phosphorus Phosphorus utilization Microcoleus chthonoplastes PCC 7420 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus chthonoplastes; 7.846933606 7.993720961 8.017467728 7.433254627 7.929362337 7.61318122 7.828987216 7.959923422 94471085 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.437394047 8.197326288 7.554206971 7.010301932 8.335678312 7.348998073 7.202213731 3157674 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 7.734483536 7.635207331 7.729676552 7.807383651 118688072 nagG Organic Remediation Aromatics Aromatic carboxylic acid Marinomonas sp. MWYL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 7.497838194 7.434841106 52548525 mcrA Carbon cycling Methane Methane production uncultured archaeon GZfos17A3 superkingdom:Archaea; 7.994911983 7.446507842 145228395 cymC Organic Remediation Aromatics Other aromatics Aspergillus niger 7.235301505 7.450000904 6.904974434 7.39539058 7.421794158 7.15684826 110834706 katA Stress Oxygen stress Alcanivorax borkumensis SK2 7.155776353 7.243844166 6.810681632 7.425725925 7.155659815 7.596471911 86159238 cytochrome Energy process Energy process Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 7.452596122 7.66284634 7.869552136 6.990994964 119817635 ChrA Metal Resistance Chromium Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.499193763 7.775729449 7.910345163 7.370646844 29293282 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.56524249 7.34496363 6.757889008 7.536865759 7.282565799 121601805 gyrB other category gyrB Bartonella bacilliformis KC583 7.230067213 7.128430091 148259935 NADH_ubiquinone_oxidoreductase Bioleaching Electron transport Acidiphilium cryptum JF-5 7.203809742 7.19457212 60476314 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.493308709 7.729220999 7.778921244 6.93129086 8.100624641 7.53144232 7.623731589 8.24793076 146196233 glnA Stress Nitrogen limitation Bradyrhizobium sp. ORS278 7.725931045 7.466325231 7.776952867 7.276623143 85706716 ahpC Stress Oxygen stress Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.122039802 6.865634276 7.514443794 7.29537223 7.095349908 7.295351376 163744774 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 7.674509298 7.543447262 7.664860105 7.720931983 7.570370375 7.528954561 171276754 xylA Carbon cycling Carbon degradation Hemicellulose Bifidobacterium dentium ATCC 27678 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium dentium; 7.177172475 7.47885055 24371611 gyrB other category gyrB Shewanella oneidensis MR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella oneidensis; 7.142299096 7.100662187 126725297 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 6.962433899 7.518325291 7.479779686 7.285279035 7.548085002 7.535800602 7.248004138 7.514964863 254491243 sigma_70 Stress Sigma factors Methylophaga thiooxidans DMS010 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Methylophaga;species:Methylophaga thiooxidans; 6.788931645 7.328544928 7.352020669 6.945298075 7.211766741 226314510 glnA Stress Nitrogen limitation Brevibacillus brevis NBRC 100599 7.566891955 7.260736564 6.922746126 7.115938427 7.08531457 7.256022572 38349502 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira; 7.422712246 7.408523647 6.893389881 7.131347604 7.482223645 229734084 katE Stress Oxygen stress Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 7.09918369 7.432544977 7.170421795 7.136302183 7.676634379 7.230341356 7.19731151 91699357 fnr Stress Oxygen stress Polaromonas sp. JS666 7.029942322 7.767060163 7.698645285 129279054 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 6.743566634 7.04601015 33147562 napA Nitrogen Dissimilatory N reduction Haemophilus ducreyi 35000HP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus ducreyi; 7.145135644 6.981778419 7.011684549 7.481278466 15075120 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 6.753290347 7.55112186 7.154147381 7.348052986 7.58773132 7.238886589 7.506538962 7.555087776 121604732 katE Stress Oxygen stress Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 7.560919771 7.568883526 7.51917627 7.983755237 7.976590731 7.805239994 7.844011837 261407081 ara Carbon cycling Carbon degradation Hemicellulose Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.75397946 7.863156296 257148159 desR Stress Cold shock Lactobacillus rhamnosus GG superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 7.42871053 7.321355652 7.525819905 7.325235291 188022866 AceB Carbon cycling Carbon degradation others Providencia stuartii ATCC 25827 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia stuartii; 7.07052433 7.030658705 6.759869866 6.663944728 7.18479082 51891967 merP Metal Resistance Mercury Symbiobacterium thermophilum IAM 14863 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVIII. Incertae Sedis;genus:Symbiobacterium;species:Symbiobacterium thermophilum; 7.471764756 7.87072513 7.4522244 7.777020592 78610298 obgE Stress Radiation stress Lactobacillus sakei subsp. sakei 23K superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus sakei; 7.436463155 7.443974458 7.096893137 7.085059924 7.392957896 6.984894259 7.284442077 113475682 fnr Stress Oxygen stress Trichodesmium erythraeum IMS101 7.509375027 7.382025117 114561454 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Shewanella frigidimarina NCIMB 400 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella frigidimarina; 6.915512114 6.893378144 113728764 mauAB Organic Remediation Herbicides related compound Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 7.176744838 6.939782533 150024954 dnaK Stress Heat shock Flavobacterium psychrophilum JIP02/86 7.131163611 7.140631183 189495620 pstB Stress Phosphate limitation Chlorobium phaeobacteroides BS1 7.08546431 7.873083146 7.249497855 6.916948622 7.780275546 270307915 sigma_70 Stress Sigma factors Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.412541563 7.308858937 66732729 major_capsid_protein Bacteria phage STRUCTURAL Listeria phage P100 order:Caudovirales;family:Myoviridae;genus:SPO1-like viruses;species:Listeria phage A511; 6.668085461 7.079688229 110592193 nirS Nitrogen Denitrification uncultured organism 7.389866006 7.372749611 7.027565868 6.681619729 7.437912352 7.335340346 7.046578133 7.728695446 253986246 pstA Stress Phosphate limitation Methylovorus sp. SIP3-4 7.188317994 7.240736808 261879259 sigma_70 Stress Sigma factors Prevotella bergensis DSM 17361 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bergensis; 7.318749712 7.317740284 6.982638158 7.335283822 254000361 fnr Stress Oxygen stress Methylovorus sp. SIP3-4 7.428328361 7.684931919 7.476613829 7.487852929 70997737 pectinase Carbon cycling Carbon degradation Pectin Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 6.979147147 7.047470332 6.763183376 7.341701582 6.763744491 6.929833049 119694546 chnB Organic Remediation Other Hydrocarbons Mycobacterium sp. KMS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.770269403 7.591023029 240265590 amoA Nitrogen Nitrification superkingdom:Bacteria; 6.92615655 7.526921898 167747976 pstB Stress Phosphate limitation Anaerostipes caccae DSM 14662 7.279337521 7.110074957 6.989925345 7.301849475 7.115975015 7.518727653 18893325 endochitinase Carbon cycling Carbon degradation Chitin Pyrococcus furiosus DSM 3638 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Pyrococcus;species:Pyrococcus furiosus; 7.301625734 7.487779258 89340835 nhh Organic Remediation Aromatics Nitoaromatics Mycobacterium flavescens PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 7.518725482 7.373934546 7.465147371 7.403822049 228649609 Tet Antibiotic resistance other Bacillus cereus BDRD-ST196 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 6.921685677 7.178556645 238698225 pstB Stress Phosphate limitation Yersinia kristensenii ATCC 33638 7.12154357 7.040151901 6.861155776 7.255174881 7.213647538 7.075903767 171994753 ChrA Metal Resistance Chromium Burkholderia ambifaria MC40-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 7.920391352 8.017221375 8.140909646 7.953828069 8.154785746 8.166159094 7.953598958 256827741 nrfA Nitrogen Dissimilatory N reduction Cryptobacterium curtum DSM 15641 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Cryptobacterium;species:Cryptobacterium curtum; 7.415904372 7.622214491 7.391872819 7.508073631 29466062 norB Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.365196168 7.390349992 7.335186683 7.665236111 242212251 endochitinase Carbon cycling Carbon degradation Chitin Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 7.583692303 7.482940575 6.870481123 7.355278493 7.527730098 7.202642397 7.171365368 7.689775322 229098740 pstB Stress Phosphate limitation Bacillus cereus Rock3-29 7.063591375 7.10749071 110350788 nirK Nitrogen Denitrification Nisaea denitrificans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Nisaea; 7.009316014 7.470497989 49474970 obgE Stress Radiation stress Bartonella henselae str. Houston-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella henselae; 6.93236899 7.260280167 124381071 AceB Carbon cycling Carbon degradation others Stenoxybacter acetivorans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Stenoxybacter; 7.115003452 7.168505484 7.145682167 7.438753832 7.056440033 6.919142895 7.215489571 67524609 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.424645285 7.161566705 6.957278692 7.598194005 7.146371085 7.340613754 15076855 dsrA Sulphur sulfite reductase Desulfosporosinus orientis superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus; 6.96642435 7.060695893 90407360 ZntA Metal Resistance Zinc Psychromonas sp. CNPT3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas; 7.414994992 7.18864653 150839657 sigma_24 Stress Sigma factors Actinobacillus succinogenes 130Z superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus succinogenes; 6.971398327 7.657449993 7.455618516 7.61381317 7.67142353 64059363 lip Carbon cycling Carbon degradation Lignin Pleurotus pulmonarius superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pleurotaceae;genus:Pleurotus; 7.250841871 7.298852007 227401586 AceB Carbon cycling Carbon degradation others Gordonia bronchialis DSM 43247 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 7.055939583 6.802946052 256714889 phoB Stress Phosphate limitation Lactobacillus coleohominis 101-4-CHN superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus coleohominis; 7.251549131 7.286408723 6.761687351 7.72142175 7.351095713 7.405918876 219847917 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 8.30753648 7.88997034 8.27249932 8.138876916 8.247822625 7.819560225 8.113874361 8.013110407 85836239 proV Stress Osmotic stress Vibrio sp. MED222 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.09600382 7.073963677 77378435 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.506120894 7.571087102 7.446142209 7.855726875 7.755578804 7.66214569 7.732840944 160896565 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.400695888 7.72211996 7.59644152 7.97787672 7.257660497 7.320386365 47096041 nmoA Organic Remediation Aromatics Nitoaromatics Listeria monocytogenes str. 1/2a F6854 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria monocytogenes; 8.106889671 7.699187338 7.503183258 8.133785312 7.903312377 7.917269395 7.437633373 7.870060673 62185043 type_III_secretion virulence secretion Chlamydophila abortus S26/3 superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Chlamydiaceae;genus:Chlamydophila;species:Chlamydophila abortus; 6.959079509 7.038635571 223585947 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 8.321251903 7.996264972 8.584314739 7.981359123 8.615463991 8.033687323 7.675912768 7.678924411 208605072 hao Nitrogen Nitrification uncultured planctomycete superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales; 7.511044004 7.485169808 7.459242296 7.475329093 91686535 SMR_antibiotics Antibiotic resistance transporter Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 6.86970136 7.3263484 88187534 glnA Stress Nitrogen limitation Methanospirillum hungatei JF-1 7.030917064 7.066795277 6.880858645 7.498457565 86168968 gyrB other category gyrB Synechococcus sp. RS9917 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.77400387 7.975853854 7.61975025 7.671873714 7.852300647 242122417 phoA Stress Phosphate limitation Desulfovibrio salexigens DSM 2638 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio salexigens; 6.977436195 7.091480473 72395372 glnA Stress Nitrogen limitation Methanosarcina barkeri str. Fusaro 7.236479946 7.129226492 6.594115288 7.507859357 88703744 CusA Metal Resistance Copper gamma proteobacterium KT 71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 7.100284348 6.988306354 33320480 dsrA Sulphur sulfite reductase sulfate-reducing bacterium oXyS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 7.261972772 7.059198801 197210111 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 6.964590947 7.243270337 7.199900365 7.710372975 55823669 glnR Stress Nitrogen limitation Streptococcus thermophilus CNRZ1066 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus thermophilus; 6.913440799 7.256404541 283953332 sigma_70 Stress Sigma factors Acidaminococcus fermentans DSM 20731 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Acidaminococcus;species:Acidaminococcus fermentans; 7.602185369 7.535413007 7.030485635 7.643483833 18495818 chnB Organic Remediation Other Hydrocarbons Xanthobacter flavus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter; 7.278855196 7.463433202 7.13178113 8.031882107 7.824883731 7.595009004 7.558358811 134266549 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermodenitrificans; 7.143491277 7.497049485 7.115905693 6.746559616 7.562668176 115384068 pectinase Carbon cycling Carbon degradation Pectin Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.133493886 7.069970728 6.965960268 6.688514762 7.231754492 224611123 fnr Stress Oxygen stress Thioalkalivibrio sp. K90mix 7.284771694 7.249587281 6.878519494 7.079483194 126657383 rubisco Carbon cycling Carbon fixation Cyanothece sp. CCY0110 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 6.846796978 7.019894159 82410282 pstB Stress Phosphate limitation Nitrosospira multiformis ATCC 25196 7.28508873 7.371384548 6.848035635 7.418191934 7.250641453 7.373949191 99078551 rd Organic Remediation Chlorinated solvents Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 6.947825482 7.143730825 88777810 pilin virulence pilin Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 7.397590331 7.34073998 123441740 bglP Stress Glucose limitation Yersinia enterocolitica subsp. enterocolitica 8081 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 7.646121407 7.733810718 7.945649216 157680367 perR Stress Oxygen stress Bacillus pumilus SAFR-032 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pumilus; 7.325946449 7.375633799 111034972 dsrA Sulphur sulfite reductase Desulfatibacillus olefinivorans superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatiferula; 6.945530898 7.121466124 6.963267996 7.449621943 15601018 amyA Carbon cycling Carbon degradation Starch Vibrio cholerae O1 biovar eltor str. N16961 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 7.095760515 6.893844875 163797467 ppx Phosphorus Phosphorus utilization alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 7.742641962 8.015753555 7.540674485 8.111070016 7.795573439 7.796727788 7.857238783 55509029 silC Metal Resistance Silver Burkholderia glumae superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.35416066 7.483464166 254454179 Tet Antibiotic resistance other Octadecabacter antarcticus 238 7.207675942 7.492802355 7.039265348 7.026603212 7.616574643 110633169 ophC Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 7.473521281 7.077208665 6.757842502 7.394843381 24372201 cytochrome Energy process Energy process Shewanella oneidensis MR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella oneidensis; 7.049121878 7.204590809 7.20021153 7.433689109 153864882 napA Nitrogen Dissimilatory N reduction Beggiatoa sp. SS superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Beggiatoa; 7.306235799 7.489137079 6.824535026 7.472519431 90337524 sox Sulphur Sulphur oxidation Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 7.648294136 7.746326379 7.326627252 7.554239776 89241978 rubisco Carbon cycling Carbon fixation Fischerella muscicola SAG 1427-1 superkingdom:Bacteria;phylum:Cyanobacteria;order:Stigonematales;genus:Fischerella;species:Fischerella muscicola; 7.362534162 7.117566845 6.857271103 6.94716148 7.547762617 7.368352159 7.115175887 7.128840836 111026466 alkK Organic Remediation Others Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7.402121404 7.392700494 7.111620968 7.288040793 7.309327792 7.252956153 7.791524718 145411040 ureC Nitrogen Ammonification Caldicellulosiruptor saccharolyticus DSM 8903 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Caldicellulosiruptor;species:Caldicellulosiruptor saccharolyticus; 7.847862585 7.682294572 7.547151591 7.545950706 260569856 pstC Stress Phosphate limitation Ferroglobus placidus DSM 10642 superkingdom:Archaea;phylum:Euryarchaeota;class:Archaeoglobi;order:Archaeoglobales;family:Archaeoglobaceae;genus:Ferroglobus;species:Ferroglobus placidus; 7.070044934 6.815388234 229852325 hrcA Stress Heat shock Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 7.198645171 7.356462831 73662044 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus saprophyticus; 7.133208317 7.128324952 410516 ureC Nitrogen Ammonification Staphylococcus xylosus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus; 6.95028807 6.984463358 158316920 amyA Carbon cycling Carbon degradation Starch Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 7.332975487 7.150778712 120560152 TehB Metal Resistance Tellurium Shewanella sp. W3-18-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 7.192429202 7.100828233 7.055313844 7.339682141 15899007 thioredoxin Bioleaching Sulphur Sulfolobus solfataricus P2 6.803718567 6.993684349 46249424 nhh Organic Remediation Aromatics Nitoaromatics Bacillus sp. RAPc8 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.157608901 7.213675119 257478608 pstC Stress Phosphate limitation Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 7.726348385 7.25495173 7.691458614 8.208742405 8.145707397 7.966672992 7.672925128 7.910777392 197763603 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces sp. SPB74 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7.751019852 7.725758879 8.085063652 7.393590547 7.503133481 7.965191122 7.964733247 85696951 ArsC Metal Resistance Arsenic Nitrobacter sp. Nb-311A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter; 7.354169569 7.924853895 7.413432817 7.065882681 258596253 sigma_24 Stress Sigma factors Desulfurivibrio alkaliphilus AHT2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfurivibrio;species:Desulfurivibrio alkaliphilus; 7.571606629 7.198166224 7.103590205 7.077640063 7.501753773 86156434 gyrB other category gyrB Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 7.944085771 7.889365673 7.408371191 7.397281415 7.616201303 7.641116124 7.954101531 212561496 cda Carbon cycling Carbon degradation Starch Anoxybacillus flavithermus WK1 7.272913198 7.004767939 186474790 sigma_24 Stress Sigma factors Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.497577253 7.609888762 222102131 cydB Stress Oxygen limitation Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.445308557 7.120066604 7.415016459 7.096982583 69301143 CopA Metal Resistance Copper Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.566901933 7.223684359 144751 cda Carbon cycling Carbon degradation Starch 6.743748794 7.036298964 209899590 dmsA Organic Remediation Others Enterobacter cancerogenus ATCC 35316 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 7.207197145 7.567929532 7.416565017 7.013664094 7.769282097 7.414922796 7.258890661 7.957020911 16081928 universal_stress_Family_protein_III Bioleaching other category Thermoplasma acidophilum DSM 1728 7.526038912 7.632390463 7.25704089 6.843098826 283850643 Tet Antibiotic resistance other Desulfovibrio sp. FW1012B superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 7.837581877 7.829701584 7.488502869 7.961899073 7.981225867 8.08819338 7.972000737 7.987727169 110224994 gyrB other category gyrB Streptococcus oralis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 7.070602983 6.998263672 169827316 proV Stress Osmotic stress Lysinibacillus sphaericus C3-41 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Lysinibacillus;species:Lysinibacillus sphaericus; 7.129137204 7.10172235 146342422 ChrA Metal Resistance Chromium Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.669834193 7.791803125 7.964598162 7.125108023 8.239242992 7.189940662 7.642541947 27355513 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.184672248 7.124335863 6.714023028 7.52968102 160429628 pstB Stress Phosphate limitation Clostridium phytofermentans ISDg 7.013129262 7.219402613 6.86766512 7.567441037 7.099135238 7.077163168 262273430 oxyR Stress Oxygen stress Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;species:Grimontia hollisae; 6.652365373 6.950275988 112462285 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 6.967715664 7.230695771 222082460 nmoA Organic Remediation Aromatics Nitoaromatics Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.722735878 7.933419489 8.07918942 8.223512933 8.28899054 8.091216695 8.081104715 189347302 CopA Metal Resistance Copper Chlorobium limicola DSM 245 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium limicola; 7.83359358 7.952387058 7.700777505 8.077360441 8.037511697 8.057424682 8.184668927 8.262824413 148260516 pcc Carbon cycling Carbon fixation Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 7.489142378 7.859043399 7.731019093 7.382179445 7.073856552 7.269962067 7.681255137 260936412 MATE_antibiotic Antibiotic resistance transporter Vibrio orientalis CIP 102891 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 6.87295274 7.156926339 7.669654895 121595411 fnr Stress Oxygen stress Acidovorax sp. JS42 7.552395076 7.527921562 7.640772445 8.01708958 7.954483169 7.954369489 7.923220079 221194777 clpC Stress Protein stress Atopobium rimae ATCC 49626 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Atopobium;species:Atopobium rimae; 8.195569389 7.944826903 7.836408641 7.75163251 41818647 hly virulence hemolysin Treponema denticola ATCC 35405 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema denticola; 7.068699906 7.143861943 6.586559405 7.30165968 6.962573061 7.209836071 113525880 ureC Nitrogen Ammonification Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 7.218440139 7.422340771 7.092548514 7.27186502 241881107 sigma_70 Stress Sigma factors Desulfovibrio vulgaris RCH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 7.302973545 7.212531114 225214162 pstB Stress Phosphate limitation Brachyspira hyodysenteriae WA1 6.906619687 6.822739553 260063687 sigma_70 Stress Sigma factors Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 7.151725351 7.422231801 7.552321201 7.282753068 7.554055086 254969286 pstS Stress Phosphate limitation Acidithiobacillus caldus ATCC 51756 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 8.030038024 7.650344533 7.746941044 7.45745189 7.808275645 7.903948646 7.99288972 227833978 pstS Stress Phosphate limitation Corynebacterium aurimucosum ATCC 700975 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium aurimucosum; 7.743732409 7.700843452 150958270 ArsA Metal Resistance Arsenic Klebsiella pneumoniae subsp. pneumoniae MGH 78578 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 7.445514336 7.467691701 7.186869518 7.689919795 7.359137417 7.363914886 7.645754602 7.470023051 21231921 pilin virulence pilin Xanthomonas campestris pv. campestris str. ATCC 33913 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 7.144043154 7.478360007 7.421974302 7.122742199 7.189778558 7.454264467 161391969 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 7.372550137 7.226756096 7.719357046 7.648378859 7.771741361 269100141 obgE Stress Radiation stress Thermanaerovibrio acidaminovorans DSM 6589 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Thermanaerovibrio;species:Thermanaerovibrio acidaminovorans; 8.16390936 8.182648017 7.987880473 7.793243342 193086213 sox Sulphur Sulphur oxidation Chlorobaculum parvum NCIB 8327 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum parvum; 7.118464244 7.413930449 260650553 amyA Carbon cycling Carbon degradation Starch Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 6.994029105 7.778766904 7.266245311 7.178568592 7.86289493 116743241 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.244403482 7.204092388 2822270 cumC Organic Remediation Aromatics Other aromatics Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 6.817471107 7.279200405 204320197 iro virulence Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 7.003239238 7.142155487 7.013776611 7.785626718 187604225 cellobiase Carbon cycling Carbon degradation Cellulose Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 7.3796506 7.395214457 7.32162491 7.685884407 7.383272045 7.295068622 239908210 cytochrome Energy process Energy process Desulfovibrio magneticus RS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio magneticus; 7.236006731 7.595583207 7.485917713 7.65769012 7.689820566 7.691699521 114799554 pstB Stress Phosphate limitation Hyphomonas neptunium ATCC 15444 7.263139884 6.993720926 170017477 glnA Stress Nitrogen limitation Leuconostoc citreum KM20 6.963280568 6.963757158 70989409 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 7.565925585 7.629641853 7.315973215 7.097156183 7.282022505 7.504935867 7.653001485 113951378 nrfA Nitrogen Dissimilatory N reduction Shewanella baltica OS195 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 7.075997807 7.308685818 158334991 sigma_70 Stress Sigma factors Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;genus:Acaryochloris;species:Acaryochloris marina; 7.276768912 7.039359576 27544680 gyrB other category gyrB Fluoribacter gormanii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Fluoribacter; 7.395560266 7.532153699 7.305155857 7.401495584 7.913411016 8.067011512 7.774990263 145607870 nagG Organic Remediation Aromatics Aromatic carboxylic acid Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 7.801427492 7.411704245 6.993041957 7.111440378 7.585689865 7.52799446 7.118443838 7.355191386 222100288 phoB Stress Phosphate limitation Thermotoga neapolitana DSM 4359 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga;species:Thermotoga neapolitana; 6.985973431 7.131864346 160887534 catB Organic Remediation Aromatics BTEX and related aromatics Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 7.214973697 7.143960537 76800784 ZntA Metal Resistance Zinc Natronomonas pharaonis DSM 2160 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natronomonas;species:Natronomonas pharaonis; 7.559678796 7.174242856 7.499731941 7.621806688 7.708797376 7.739721074 7.693426437 229363390 iro virulence Pseudomonas fluorescens SBW25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.303955391 7.334022593 7.23702349 6.660375997 7.278714598 7.156240953 7.67117857 72384789 CopA Metal Resistance Copper Haemophilus parasuis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus; 7.342150957 7.416958813 7.520464108 7.034040418 7.265070406 7.485939648 119466250 nagG Organic Remediation Aromatics Aromatic carboxylic acid Nodularia spumigena CCY9414 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nodularia;species:Nodularia spumigena; 7.455484644 7.350810205 7.593998408 7.12557535 7.28370104 7.153103112 88702603 nosZ Nitrogen Denitrification uncultured soil bacterium superkingdom:Bacteria; 7.036582727 7.364168652 7.060350077 7.641301029 7.390968378 7.023021781 7.358303698 229086838 pstB Stress Phosphate limitation Bacillus cereus Rock3-44 6.980283303 7.045451472 6.79348316 7.295223629 7.19903988 7.002678608 227549974 glnA Stress Nitrogen limitation Corynebacterium lipophiloflavum DSM 44291 8.131761009 7.60013772 7.540013368 7.747774982 224477382 NirB Nitrogen Assimilatory N reduction Staphylococcus carnosus subsp. carnosus TM300 6.804276001 7.25286892 157285399 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.271136217 7.120351107 7.241560984 7.25133977 7.499640806 89952958 oxyR Stress Oxygen stress Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 7.14593643 7.010112641 7.334604802 7.325717331 6.917821961 7.319331974 145224849 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 7.554279599 7.783539343 7.970475196 7.434999033 7.749279414 7.624068668 8.047908215 114315080 alkK Organic Remediation Others Granulibacter bethesdensis CGDNIH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 7.832056704 8.052421537 8.225723291 8.064479514 8.129977227 7.920953456 8.277988401 13473201 pstC Stress Phosphate limitation Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 8.092542183 8.046498232 7.635866187 8.04493863 7.872673109 7.900444029 8.025434227 8.160340249 148979061 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 7.095359232 7.043496721 69246710 gyrB other category gyrB Enterococcus faecium DO superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus faecium; 7.119542791 6.962506704 222524746 bphF1 Organic Remediation Aromatics Polycyclic aromatics Chloroflexus sp. Y-400-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus; 7.009174106 6.88395301 6.486257689 7.487449161 8250446 gyrB other category gyrB Mycoplasma hominis superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Mycoplasmatales;family:Mycoplasmataceae;genus:Mycoplasma; 7.256600438 7.109067976 17428552 ppk Phosphorus Phosphorus utilization Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 7.340187018 7.825927253 7.36099444 7.014153835 148658245 pstC Stress Phosphate limitation Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 7.022256599 7.518412698 7.150632261 7.159887924 7.670405674 194011050 alkK Organic Remediation Others Bacillus pumilus ATCC 7061 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pumilus; 7.073241482 6.916383038 6.747327152 7.567691207 256668308 B_lactamase_A Antibiotic resistance Beta-lactamases Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7.133833165 7.577863456 7.329693672 6.957862074 7.211084423 7.723193994 145047501 pcc Carbon cycling Carbon fixation Polynucleobacter sp. QLW-P1DMWA-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 6.644235688 6.8423678 71383714 nasA Nitrogen Assimilatory N reduction Symploca atlantica PCC 8002 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Symploca;species:Symploca atlantica; 7.840021144 7.440967532 7.707598539 7.185761347 7.165372672 7.623601076 7.558185902 148260643 dnaK Stress Heat shock Acidiphilium cryptum JF-5 7.61975745 7.579159824 7.453112654 7.253004032 46307874 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6.802097991 7.316681183 42558845 trzN Organic Remediation Herbicides related compound Arthrobacter aurescens superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.601211281 7.737458915 7.392185609 7.627777911 7.990721142 7.768446024 7.830832265 255708160 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.640853702 7.671788425 7.905875055 6.965300929 111026996 CDH Carbon cycling Carbon degradation Cellulose Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7.930746357 7.764701779 7.206278992 7.827306287 7.481277647 7.845388596 7.537243507 114776656 ZntA Metal Resistance Zinc Mariprofundus ferrooxydans PV-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Zetaproteobacteria;order:Mariprofundales;family:Mariprofundaceae;genus:Mariprofundus;species:Mariprofundus ferrooxydans; 7.26842631 7.582115205 7.492202198 7.544191231 7.810690549 241319606 SMR_antibiotics Antibiotic resistance transporter Neisseria flavescens SK114 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria flavescens; 6.641464764 7.353709472 71735955 TerD Metal Resistance Tellurium Pseudomonas syringae pv. phaseolicola 1448A 7.143951549 6.822317747 172039298 CopA Metal Resistance Copper Cyanothece sp. ATCC 51142 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.10823172 6.94356013 146743239 arsB Metal Resistance Arsenic Leptospirillum ferriphilum superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 7.118656178 7.51100132 7.226489613 7.561040053 224522151 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Bacteroides cellulosilyticus DSM 14838 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 7.303331415 7.506676549 7.641596496 8.094652757 8.031428894 8.131320541 7.931645313 7.968261519 269836321 ABC_antibiotic_transporter Antibiotic resistance transporter Sphaerobacter thermophilus DSM 20745 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 7.782791018 7.84640698 7.573538613 7.305771631 212687406 obgE Stress Radiation stress Providencia alcalifaciens DSM 30120 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 7.154903899 6.77488532 262373059 obgE Stress Radiation stress Acinetobacter junii SH205 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter junii; 7.060331672 7.343558447 38427052 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.621737889 7.469991289 7.61340413 7.738943331 7.542713141 7.578755169 166334 phenol_oxidase Carbon cycling Carbon degradation Lignin Agaricus bisporus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Agaricaceae;genus:Agaricus; 7.227673374 7.22375094 157320028 pstB Stress Phosphate limitation Serratia proteamaculans 568 7.456436271 7.202682279 7.615919663 7.957930038 83631624 cydB Stress Oxygen limitation Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 7.266750155 7.297645878 158109011 glnA Stress Nitrogen limitation Frankia sp. EAN1pec 6.954893653 7.053178037 6.872427425 7.239171338 119413726 tfdA Organic Remediation Aromatics Chlorinated aromatics Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 7.660062362 7.547764022 7.634570365 7.628551248 7.929766313 7.784509237 7.696023718 238836759 xylanase Carbon cycling Carbon degradation Hemicellulose Streptomyces sp. TN119 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7.178797675 7.510929271 7.188971348 7.477174228 7.86818074 7.656875904 7.417213275 7.304635289 33385657 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.064691668 7.306524663 7.244900328 7.060465391 165880059 exoglucanase Carbon cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 6.824392644 7.186284793 247533347 glnA Stress Nitrogen limitation Aggregatibacter aphrophilus NJ8700 7.058312285 6.848914514 198246838 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Acidithiobacillus ferrooxidans ATCC 53993 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 7.624880139 7.414831292 7.203743148 7.640188658 7.499856756 7.502201009 54306406 pilin virulence pilin Moraxella catarrhalis 7.188356004 7.168674515 194012432 phoA Stress Phosphate limitation Bacillus pumilus ATCC 7061 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pumilus; 6.923142717 7.19413585 167622967 cytochrome Energy process Energy process Shewanella halifaxensis HAW-EB4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella halifaxensis; 7.025184689 7.367548308 6.930896097 7.404266326 76877090 ahpF Stress Oxygen stress Pseudoalteromonas haloplanktis TAC125 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas haloplanktis; 7.28163985 7.290687697 7.208691405 7.744179277 148981284 pstB Stress Phosphate limitation Vibrionales bacterium SWAT-3 7.048508253 7.046646023 17546256 ppx Phosphorus Phosphorus utilization Ralstonia solanacearum GMI1000 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 7.328022253 7.050256173 18034301 dsrA Sulphur sulfite reductase Desulfovibrio fructosovorans superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 7.340613377 7.661473577 7.82633586 7.208546292 8.257172823 7.159035655 7.110998695 190893018 B_lactamase_C Antibiotic resistance Beta-lactamases Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.528409851 7.50628466 7.185474951 7.177836018 7.4834072 7.80012324 7.462205543 7.428820113 124258775 vanA Carbon cycling Carbon degradation Others Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 7.511349963 7.280466497 7.362509541 7.476337801 7.987617526 126180218 pstB Stress Phosphate limitation Methanoculleus marisnigri JR1 6.951791276 7.544681833 55379817 pstB Stress Phosphate limitation Haloarcula marismortui ATCC 43049 7.902110173 7.340480239 7.72689151 7.76043763 7.86611138 7.801022551 7.94835598 227507780 pstB Stress Phosphate limitation Gardnerella vaginalis ATCC 14019 7.175299232 6.857401227 148830258 glnA Stress Nitrogen limitation Erythrobacter sp. SD-21 7.60316654 7.467227031 7.149843022 7.48225625 7.439306516 7.273025378 7.355816181 39952025 glx Carbon cycling Carbon degradation Lignin Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 6.922600192 6.788507179 210065121 katE Stress Oxygen stress Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.361072099 7.397658659 7.084665191 6.897306984 114570175 AceA Carbon cycling Carbon degradation others Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 7.252992855 7.447485999 7.091083576 6.983633293 7.764824863 18892737 ahpC Stress Oxygen stress Pyrococcus furiosus DSM 3638 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Pyrococcus;species:Pyrococcus furiosus; 6.877396568 7.416600541 83815232 MATE_antibiotic Antibiotic resistance transporter Salinibacter ruber DSM 13855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 6.969022822 7.345280416 126641498 ArsC Metal Resistance Arsenic Acinetobacter baumannii ATCC 17978 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 7.167761804 7.201037589 12667610 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium UMTRAdsr648-22 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 7.769239821 7.504078465 7.287546635 7.828216211 7.696533482 7.543079346 7.418115347 7.73933014 51892055 napA Nitrogen Dissimilatory N reduction Symbiobacterium thermophilum IAM 14863 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVIII. Incertae Sedis;genus:Symbiobacterium;species:Symbiobacterium thermophilum; 7.298413856 7.422902066 7.220118755 7.001738497 7.343276978 7.614985642 152068944 pilin virulence pilin Beggiatoa sp. PS superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Beggiatoa; 7.385903321 7.242071901 7.148967354 6.950343523 7.196464345 170776176 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 8.026275215 8.113788122 7.992228358 7.750069962 7.724434798 7.923402456 238837030 mcrA Carbon cycling Methane Methane production uncultured euryarchaeote superkingdom:Archaea;phylum:Euryarchaeota; 7.883103731 7.446292142 7.638491951 8.086631126 7.934046944 7.56031111 7.787923006 149276316 TerD Metal Resistance Tellurium Pedobacter sp. BAL39 6.999230887 7.341846805 227528361 pstB Stress Phosphate limitation Lactobacillus ruminis ATCC 25644 7.317420893 6.959644246 6.968207066 7.469676279 94985619 sigma_24 Stress Sigma factors Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 7.258748885 7.052468499 7.155610233 7.307933862 77378549 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.410158268 7.57892055 7.557632335 7.678098023 7.077231372 7.283066551 157411492 napA Nitrogen Dissimilatory N reduction uncultured prokaryote 7.334742097 7.318465491 7.194342671 7.425382885 239520195 ara Carbon cycling Carbon degradation Hemicellulose Clostridiales bacterium 1_7_47_FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales; 7.072893731 7.245077146 7.431171402 6.687439261 124521136 nagI Organic Remediation Aromatics Aromatic carboxylic acid Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 7.435589098 7.586704568 7.609360249 7.776372634 7.235741685 7.231623922 7.165848532 167461362 ahpF Stress Oxygen stress Paenibacillus larvae subsp. larvae BRL-230010 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus larvae; 7.568803367 7.624676462 7.484615717 7.741317715 219997793 gyrB other category gyrB Clostridium cellulolyticum H10 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium cellulolyticum; 7.045186323 7.271662356 7.183233336 7.030233764 7.214825839 22854667 inv virulence invasion primary endosymbiont of Sitophilus zeamais superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae; 7.102015171 7.42992071 7.084566844 6.815559532 7.526200301 7.284960083 7.305928555 229816837 clpC Stress Protein stress Bifidobacterium angulatum DSM 20098 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium angulatum; 7.382823291 7.231255778 33151515 arcA Stress Oxygen limitation Haemophilus ducreyi 35000HP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus ducreyi; 6.736066144 7.36084119 193873576 cumC Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 6.722601639 7.538870539 84043081 pcaG Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 7.682706025 7.799095452 7.393564967 7.717405582 66267667 nhh Organic Remediation Aromatics Nitoaromatics Pseudomonas sp. K-9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.23003685 7.383364358 7.217413482 6.968935763 152934961 CopA Metal Resistance Copper Clostridium botulinum F str. Langeland superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium botulinum; 7.327572084 7.076324183 227493355 amyA Carbon cycling Carbon degradation Starch Mobiluncus curtisii ATCC 43063 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus curtisii; 7.585770573 7.740783826 7.852020597 8.077653494 7.903560744 7.470251219 7.908460398 167661571 bco Organic Remediation Aromatics Aromatic carboxylic acid Clostridium scindens ATCC 35704 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium scindens; 7.519006022 7.882024669 7.838799849 7.79079079 8.371231318 7.974555171 7.896392814 8.104675966 114564199 nrfA Nitrogen Dissimilatory N reduction Shewanella frigidimarina NCIMB 400 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella frigidimarina; 7.602859564 7.426715146 7.721710974 7.170257019 7.461312997 7.853778996 190893387 cap virulence capsule Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.504536059 7.82069615 209531088 ahpC Stress Oxygen stress Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 6.770927637 7.173491015 7.72219466 19909541 gyrB other category gyrB Chlorobium limicola superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium; 7.563315388 7.761569355 7.599954936 7.932268201 262166654 oxyR Stress Oxygen stress Vibrio mimicus VM223 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 7.540812253 7.419100648 7.534806579 7.838046961 7.605306251 7.576066901 15897564 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sulfolobus solfataricus P2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus;species:Sulfolobus solfataricus; 7.139838597 7.255456646 157317523 hly virulence hemolysin Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 6.668159084 7.000470729 6.833044706 6.837677245 6.986184813 218289754 sigma_24 Stress Sigma factors Alicyclobacillus acidocaldarius LAA1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 7.757558616 7.948852627 7.942189467 7.591555832 7.902222359 73540091 mer Metal Resistance Mercury Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 6.551072117 7.241566225 6.868597193 6.899412621 221573233 pcc Carbon cycling Carbon fixation Thermotoga neapolitana DSM 4359 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga;species:Thermotoga neapolitana; 6.983578119 7.144702862 252127851 pcc Carbon cycling Carbon fixation Corynebacterium matruchotii ATCC 14266 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium matruchotii; 7.554301554 7.712517833 99080552 AceB Carbon cycling Carbon degradation others Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.364186681 7.369503116 7.037036715 7.585052357 7.366584187 6.976332974 226349693 pstA Stress Phosphate limitation Rhodococcus opacus B4 6.989888186 7.438114503 229478520 clpC Stress Protein stress Planctomyces limnophilus DSM 3776 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces limnophilus; 6.540972593 7.219372361 255928178 DNA_polymerase_type_I Bacteria phage REPLICATION Mycobacterium phage Peaches order:Caudovirales;family:Siphoviridae; 7.545671391 7.462900491 7.143064287 7.773384512 7.605804356 7.628689321 7.546527246 133779821 pectinase Carbon cycling Carbon degradation Pectin Aspergillus oryzae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 7.2635633 7.321724768 6.949779695 7.438371903 171276927 pstB Stress Phosphate limitation Bifidobacterium dentium ATCC 27678 7.31316134 7.641279068 7.81359409 7.214678893 7.476836381 7.463935986 229873577 B_lactamase_C Antibiotic resistance Beta-lactamases Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 7.378466416 7.368376363 6.714570914 7.258665795 154238355 cbb Bioleaching Carbon fixation Thiomonas sp. 3As;Thiobacillus intermedius K12 7.125031061 7.601819778 7.411067592 7.397845161 7.507822033 7.35101404 72121359 phn Organic Remediation Herbicides related compound Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.447883043 7.512433769 7.3949745 7.477379645 7.444012245 7.526191664 182412459 sigma_24 Stress Sigma factors Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 6.912436855 6.91128712 6.876303957 7.163836164 5565877 amyA Carbon cycling Carbon degradation Starch Lactobacillus manihotivorans superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus; 7.137680929 7.213512885 7.025553146 6.965591467 7.212392326 222438023 oxyR Stress Oxygen stress Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 6.939402963 7.404835308 67539004 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.528116594 7.549339973 7.707298167 7.916193164 7.939767399 8.02723613 7.756131388 7.898672958 110550222 pchCF Organic Remediation Aromatics BTEX and related aromatics Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 7.061252574 7.460864584 6.976621491 7.611713548 7.228384972 6.954992251 217504164 pstB Stress Phosphate limitation Methylocella silvestris BL2 7.698279148 7.454934106 7.291442948 7.333343358 7.377661431 7.547656629 224800285 iro virulence Opitutaceae bacterium TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 7.47984033 7.410640483 6.886825784 7.277884328 7.510696338 163802687 sigma_70 Stress Sigma factors Vibrio sp. AND4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.054250022 7.223121908 17133071 mer Metal Resistance Mercury Nostoc sp. PCC 7120 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc; 7.252452036 7.345218999 7.470444856 6.743559682 7.667436426 6.891957453 7.319928717 255338352 cda Carbon cycling Carbon degradation Starch Thermoanaerobacter mathranii subsp. mathranii str. A3 7.232131885 7.22504316 7.404087691 7.264922508 186474089 MFS_antibiotic Antibiotic resistance transporter Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.645737949 7.820792165 7.447353809 8.140992347 7.978965061 7.977291535 7.841607941 239579677 nrfA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.423555809 7.22511381 6.996560007 6.601945303 8.041951263 7.173881925 6.980320705 118424270 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.534442783 7.469564488 6.947550335 7.307762881 7.415399438 7.144520474 7.15286803 7.084637907 113936476 chnB Organic Remediation Other Hydrocarbons Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 7.489251835 7.342994979 7.586536881 7.543247862 7.342192526 7.487784406 229790896 obgE Stress Radiation stress Abiotrophia defectiva ATCC 49176 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Aerococcaceae;genus:Abiotrophia;species:Abiotrophia defectiva; 7.125015665 7.009135941 170102563 glnA Stress Nitrogen limitation Laccaria bicolor S238N-H82 6.918171894 7.476781527 7.721557513 7.210571665 7.417761297 7.433531588 290472 Tet Antibiotic resistance other superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 7.690848404 7.513690168 88703459 aclB Carbon cycling Carbon fixation gamma proteobacterium KT 71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 7.138577983 7.14288078 196257897 amyA Carbon cycling Carbon degradation Starch Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 6.878091918 7.09243331 49531082 TerZ Metal Resistance Tellurium Acinetobacter sp. ADP1 6.867838742 7.011426574 145962261 CadA Metal Resistance Cadmium Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 6.761735722 7.012944381 212171534 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 6.997378991 7.144525498 3322286 groEL Stress Heat shock Treponema pallidum subsp. pallidum str. Nichols superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema pallidum; 7.246381739 7.322659115 7.424051177 7.010746026 29293186 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.373577957 7.441872029 7.322973301 7.403811054 7.504033023 7.335762865 7.479032664 218165997 amyA Carbon cycling Carbon degradation Starch Cyanothece sp. PCC 8801 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.119353892 7.202753935 90194820 xylA Carbon cycling Carbon degradation Hemicellulose Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 6.93460959 6.909189969 6.685944433 7.427241351 118602385 dnaK Stress Heat shock Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica) 7.173011639 7.123214762 55978139 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.376470129 7.375216948 262312086 pstB Stress Phosphate limitation Acinetobacter junii SH205 7.251813832 7.123442415 157375046 hydrogenase Energy process Energy process Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 6.843352089 6.948571965 20808696 ctsR Stress Protein stress Thermoanaerobacter tengcongensis MB4 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Thermoanaerobacter;species:Thermoanaerobacter tengcongensis; 6.990488946 7.055225065 6.458323098 7.493728569 197116722 merB Metal Resistance Mercury Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 7.429880984 7.13499183 3157690 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 7.185037059 6.931353941 7.447129309 62423717 SMR_antibiotics Antibiotic resistance transporter Brevibacterium linens BL2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium linens; 7.502709603 7.945984749 7.797803255 7.953025598 7.918168267 8.175394765 7.800466778 7.799119663 151302405 APS_AprA Sulphur adenylylsulfate reductase Desulfotomaculum sp. JD176 6.706715294 7.110763372 124494074 fnr Stress Oxygen stress Lactococcus lactis subsp. cremoris MG1363 7.036408623 7.02588546 126465824 pstB Stress Phosphate limitation Staphylothermus marinus F1 6.786543047 7.205282098 261253989 pilin virulence pilin Vibrio orientalis CIP 102891 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 7.22508037 6.996084151 145602442 phoA Stress Phosphate limitation Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 7.314669108 7.144522102 67154153 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 7.516886474 7.493408099 7.887903914 7.441104324 110631070 nifH Nitrogen Nitrogen fixation uncultured soil bacterium superkingdom:Bacteria; 7.327250386 7.077753821 77174013 mer Metal Resistance Mercury Streptococcus agalactiae H36B superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus agalactiae; 7.065922798 7.418294091 6.795748371 7.358405162 6.996999932 6.945008687 7.179409171 157693048 grpE Stress Heat shock Bacillus pumilus SAFR-032 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pumilus; 7.330362129 7.265631587 56750888 sigma_70 Stress Sigma factors Synechococcus elongatus PCC 6301 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus;species:Synechococcus elongatus; 7.575976184 7.662936454 7.556189089 7.963016168 264672867 pstC Stress Phosphate limitation Caulobacter segnis ATCC 21756 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 7.296904186 7.059615621 229213846 phoB Stress Phosphate limitation Dethiosulfovibrio peptidovorans DSM 11002 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Dethiosulfovibrio;species:Dethiosulfovibrio peptidovorans; 7.414649694 6.939639005 77956821 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Yersinia bercovieri ATCC 43970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 7.326671068 7.416184074 7.206500052 7.346893931 7.640790021 7.366154834 7.349741464 116326395 major_capsid_protein Bacteria phage STRUCTURAL Enterobacteria phage RB32 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 6.843473848 6.990301557 24411185 merB Metal Resistance Mercury Acinetobacter sp. ED23-35 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 7.218257664 7.645051383 146269711 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. BAV1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.407709862 7.267824866 7.138872942 7.402312378 83317016 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.120306216 7.52896945 6.707148692 6.816541101 7.67843181 7.158275393 7.179275267 7.472099369 70730394 pcc Carbon cycling Carbon fixation Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.201641298 7.110352346 7.075673786 7.570918367 7.148274459 7.22221967 85836136 ZntA Metal Resistance Zinc Vibrio sp. MED222 6.984109451 7.048309499 7.036297364 6.854552212 147851018 sigma_70 Stress Sigma factors Synechococcus sp. RCC307 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8.11668002 7.892223401 8.216314436 7.834530642 7.963133664 8.054959445 7.799674562 88599328 pstB Stress Phosphate limitation Ehrlichia chaffeensis str. Arkansas 7.364634363 7.163696484 15920312 Fe_S_cluster_binding_protein Bioleaching Electron transport Sulfolobus tokodaii str. 7 7.254633752 7.102057941 7.153953241 7.022086886 7.59959965 7.593847363 7.485926283 206570031 catB Organic Remediation Aromatics BTEX and related aromatics Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 7.16151173 7.26640654 6.846412834 6.944054166 7.539323086 117577198 ara Carbon cycling Carbon degradation Hemicellulose Gramella forsetii KT0803 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Gramella;species:Gramella forsetii; 6.762126119 7.216511734 229861005 ahpC Stress Oxygen stress Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 7.759615279 7.865693487 8.095716265 7.109562974 7.687433079 7.754259501 14389219 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.24691196 8.012226523 7.489063549 8.094613359 8.164000805 8.169677543 7.943216912 194025185 exochitinase Carbon cycling Carbon degradation Chitin Beauveria bassiana superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Cordycipitaceae;genus:Cordyceps;species:Cordyceps bassiana; 6.955382161 7.269856628 114330263 pstB Stress Phosphate limitation Nitrosomonas eutropha C91 7.239321465 7.229317221 6.881333027 6.708515551 7.565124725 110634797 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 7.731571155 7.688697245 7.420926116 7.613340413 7.703989072 7.483852551 7.17115164 146402818 glycosyl_transferase_EPS Bioleaching EPS Acidiphilium cryptum JF-5 7.814495891 7.869131844 7.779147965 7.132887541 7.867677818 7.552846341 7.334986565 7.75486212 187920099 ahpF Stress Oxygen stress Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.712644742 7.565211389 8.208079163 7.747871349 7.772157365 7.658954553 8.087995534 229877193 glnA Stress Nitrogen limitation Sphaerobacter thermophilus DSM 20745 7.255637472 7.299041313 34541491 ppk Phosphorus Phosphorus utilization Porphyromonas gingivalis W83 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas;species:Porphyromonas gingivalis; 6.918994536 7.00572915 242783880 MFS_antibiotic Antibiotic resistance transporter Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 7.290825046 7.210648821 10442739 pcaG Organic Remediation Aromatics Other aromatics Pseudomonas sp. IMT40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.6109566 7.652161304 7.710054887 7.433998521 7.364186693 7.588130138 91699223 pcc Carbon cycling Carbon fixation Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 7.029694487 7.096007377 7.001415313 6.905830971 7.536693005 7.346796121 7.162012793 58701872 catechol_B Organic Remediation Aromatics Other aromatics Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.110791903 7.438372623 7.188106009 7.099528551 7.487010345 270278889 vip virulence virulence protein Streptococcus sp. M143 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 6.817035409 7.482860197 7.775371014 10639515 rfaD_EPS Bioleaching EPS Thermoplasma acidophilum 7.150831461 7.416082956 6.97447518 7.835104902 6.95782195 7.298845367 149196318 nrfA Nitrogen Dissimilatory N reduction Lentisphaera araneosa HTCC2155 superkingdom:Bacteria;phylum:Lentisphaerae;order:Lentisphaerales;family:Lentisphaeraceae;genus:Lentisphaera;species:Lentisphaera araneosa; 7.479620602 7.679281729 8.020443281 7.883742125 7.715513133 8.00238453 7.520928843 56416519 pstC Stress Phosphate limitation Anaplasma marginale str. St. Maries superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales;family:Anaplasmataceae;genus:Anaplasma;species:Anaplasma marginale; 7.423242338 7.351448815 7.606622099 7.357733593 7.298269082 88778167 pstB Stress Phosphate limitation Reinekea sp. MED297 7.061714236 7.109935758 7.208651918 184197327 CadA Metal Resistance Cadmium Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.76127716 7.479122787 7.042798387 7.649146852 7.559329801 7.212093201 7.167494104 7.367040806 5764626 silC Metal Resistance Silver Stenotrophomonas maltophilia superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 7.20832012 7.330333497 7.417899748 7.020437579 7.721173529 6.939681928 7.695300097 7.357491179 50555173 endochitinase Carbon cycling Carbon degradation Chitin Yarrowia lipolytica superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Dipodascaceae;genus:Yarrowia;species:Yarrowia lipolytica; 6.832583713 7.211431443 133753299 Catechol Organic Remediation Aromatics Other aromatics uncultured bacterium 7.202338117 7.255678707 7.191456455 7.052611222 7.540280804 7.29287056 7.41732023 49646197 tfdA Organic Remediation Aromatics Chlorinated aromatics Yarrowia lipolytica CLIB122 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Dipodascaceae;genus:Yarrowia;species:Yarrowia lipolytica; 6.962296654 7.030460838 6.87173557 7.356962438 124515813 NADH_ubiquinone_oxidoreductase Bioleaching Electron transport Leptospirillum sp. Group II UBA 6.952147961 7.353990454 212711640 pstB Stress Phosphate limitation Providencia alcalifaciens DSM 30120 7.195636569 6.986806187 6.893012816 6.832629774 7.491031937 71556900 alkK Organic Remediation Others Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 7.338703388 7.061592132 6.701226472 7.071327952 6.993069286 7.340999809 7.06267473 77969007 TerD Metal Resistance Tellurium Burkholderia sp. 383 7.131941282 7.58688768 115251143 atzA Organic Remediation Herbicides related compound Clostridium difficile 630 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium difficile; 7.181970558 7.308159747 7.064819527 7.294305816 86145233 MFS_antibiotic Antibiotic resistance transporter Vibrio sp. MED222 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.131148504 7.293354971 6.865322841 7.444992352 227196657 sigma_70 Stress Sigma factors Lactobacillus ruminis ATCC 25644 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus ruminis; 7.976513009 8.161139307 149907652 SMR_antibiotics Antibiotic resistance transporter Moritella sp. PE36 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Moritellaceae;genus:Moritella; 6.940247142 6.932029111 78194533 pimF Organic Remediation Aromatics Aromatic carboxylic acid Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 7.380461574 7.484678608 7.668297751 7.039458429 7.686490298 7.331008563 8.146746364 163750079 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Shewanella benthica KT99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella benthica; 7.139288565 7.437306233 7.061425575 6.99965787 7.268085124 7.413922087 86285347 norB Nitrogen Denitrification Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 6.952798018 7.088218847 6.619137141 7.476755507 7.044717016 7.499620866 56791764 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Prevotella sp. RS2 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella; 6.995948531 7.396973206 7.177918548 7.394310794 163866433 srt virulence surface protein Streptococcus suis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 7.223949512 7.120905141 3062909 sigma_70 Stress Sigma factors Bacillus sp. superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.079621997 7.526395497 27262382 pstB Stress Phosphate limitation Heliobacillus mobilis 7.729658537 7.826865388 7.401681507 7.77984119 7.817239873 8.043095348 7.884708019 7.822807533 67934948 amyA Carbon cycling Carbon degradation Starch Chlorobium phaeobacteroides DSM 266 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 7.471057806 7.48958064 257460309 iro virulence Campylobacter gracilis RM3268 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter gracilis; 6.963095347 7.083130073 151302156 APS_AprA Sulphur adenylylsulfate reductase Desulfovibrio sp. X 6.842039613 7.038810558 39649294 Mex Antibiotic resistance transporter Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.017096925 7.251363185 88928616 dsrB Sulphur sulfite reductase Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 7.711349551 7.619735788 7.666886916 7.266964753 7.669164361 7.445410543 7.940120044 262403210 pstA Stress Phosphate limitation Vibrio sp. RC586 6.958259125 6.982888763 260768391 MATE_antibiotic Antibiotic resistance transporter Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 6.797066848 7.488995557 221534995 dehH109 Organic Remediation Chlorinated solvents Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 7.382090216 7.536361395 160355805 narH Stress Oxygen limitation Bacillus selenitireducens MLS10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus selenitireducens; 6.957634135 6.987728007 6.572148427 7.322611977 110648681 alkH Organic Remediation Other Hydrocarbons Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 7.531824631 7.625462541 156061635 nagG Organic Remediation Aromatics Aromatic carboxylic acid Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 7.308130544 7.322307612 219995843 fnr Stress Oxygen stress Thioalkalivibrio sp. HL-EbGR7 7.201874059 7.534428001 114800072 oxyR Stress Oxygen stress Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 7.289728489 7.144643046 146403748 heat_shock_protein Bioleaching other category Acidiphilium cryptum JF-5 7.960522188 7.751170965 167756446 Al Metal Resistance Aluminum Clostridium ramosum DSM 1402 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichi;order:Erysipelotrichales;family:Erysipelotrichaceae;species:Clostridium ramosum; 6.782275737 7.049636165 254464575 oxyR Stress Oxygen stress Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.490900074 7.499184204 7.251491428 7.107919781 7.574865186 157837427 Catechol Organic Remediation Aromatics Other aromatics Chromohalobacter sp. HS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter; 7.002709074 7.324146902 6.808574878 7.316192204 6.859173571 7.076984692 142850468 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 7.120813904 7.302218033 6.779906316 7.072404987 7.206346875 7.140126088 7.367245964 262183165 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium aurimucosum; 7.149043444 7.240568933 6.958606013 7.603068523 169823638 srt virulence surface protein Finegoldia magna ATCC 29328 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Finegoldia;species:Finegoldia magna; 6.733367858 6.94040025 30138639 CopA Metal Resistance Copper Nitrosomonas europaea ATCC 19718 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas europaea; 7.311051314 7.034644671 158632532 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.769670958 7.446589722 6.969990631 7.745039409 7.782171004 7.611685453 7.725539958 7.631046354 254473522 sox Sulphur Sulphur oxidation Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 7.28715147 6.987374395 7.178909331 6.999222093 41349579 narH Stress Oxygen limitation Haloferax mediterranei superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax; 7.353940788 7.792465632 7.510823953 7.265092731 7.749477703 7.445350002 7.586881259 184204291 mer Metal Resistance Mercury bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 7.519971304 7.354868369 187717872 nitA Organic Remediation Aromatics Other aromatics Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.274232391 7.21292559 7.326050864 6.972684855 7.54851665 7.013642336 7.26632842 77118174 DNA_ligase Bacteria phage REPLICATION Enterobacteria phage K1F order:Caudovirales;family:Podoviridae;genus:T7-like viruses; 7.246486622 7.187445555 7.097498367 7.593895119 7.324647353 7.250171194 54301966 katE Stress Oxygen stress Photobacterium profundum SS9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 7.436158622 7.156884532 7.02784618 6.705754651 206740322 pstA Stress Phosphate limitation Dictyoglomus thermophilum H-6-12 7.549867023 7.176156425 253984608 ahpC Stress Oxygen stress Methylovorus sp. SIP3-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylovorus; 7.517995614 7.578349189 7.516374522 7.644218171 7.801157535 7.546666955 7.50380551 226835879 phoB Stress Phosphate limitation Acinetobacter sp. ATCC 27244 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 7.664151916 7.632153957 7.704741391 7.269412235 7.161312709 7.581544002 160864687 pulA Carbon cycling Carbon degradation Starch "Salmonella enterica subsp. arizonae serovar 62:z4,z23:--" superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 7.539748484 7.108144351 7.045907629 7.270248612 145299955 arcA Stress Oxygen limitation Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 6.806513469 7.095979125 6.892906338 6.743318812 126641263 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Acinetobacter baumannii ATCC 17978 7.25855198 7.001009656 260614777 hly virulence hemolysin Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 7.12068897 7.076792523 7.335345149 7.250561803 6.957467503 7.248138727 260838779 pstA Stress Phosphate limitation Vibrio sp. RC341 8.003941479 7.615312228 8.094107263 7.311783855 7.36226003 8.001140062 8.098627312 56963275 pcc Carbon cycling Carbon fixation Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 7.042763767 6.977994847 126035175 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.01062398 6.851105621 7.455029092 197298188 ara Carbon cycling Carbon degradation Hemicellulose Ruminococcus lactaris ATCC 29176 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus lactaris; 6.976096333 6.914506234 209494116 pstC Stress Phosphate limitation Arthrospira maxima CS-328 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira maxima; 7.080859638 6.763636918 7.368207154 260771420 AceB Carbon cycling Carbon degradation others Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 7.602873494 7.442001297 7.6553144 7.486250768 46307944 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.257468232 7.361660741 221735071 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 7.431813515 7.874424049 8.302692434 7.309038384 8.157754847 7.159165301 7.559923804 148846645 sigma_24 Stress Sigma factors Planctomyces maris DSM 8797 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces maris; 6.616850678 7.544007066 194413975 silC Metal Resistance Silver Escherichia coli B171 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 6.980073551 7.253458689 7.641748201 7.010898873 7.98371616 186468367 tfdA Organic Remediation Aromatics Chlorinated aromatics Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 7.136506687 7.111297695 167950177 pstC Stress Phosphate limitation Endoriftia persephone 'Hot96_1+Hot96_2' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Endoriftia;species:Endoriftia persephone; 7.417132034 7.410440648 7.53620109 7.492507673 7.979445039 50119641 obgE Stress Radiation stress Pectobacterium atrosepticum SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 7.025491807 7.675067834 7.278094486 6.992500794 7.786811983 7.088829983 7.284998803 7.682991162 261407439 katE Stress Oxygen stress Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.217855734 7.331486301 7.061797232 7.643931766 34017192 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 6.747816779 7.276840101 121712150 BpH Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7.323649463 7.307220259 7.030884921 7.09597383 7.708690321 7.273190804 7.415239243 7.695034855 255110886 cda Carbon cycling Carbon degradation Starch Thermoanaerobacterium thermosaccharolyticum DSM 571 7.865501552 7.974001343 7.593834724 7.440323038 7.480976398 7.88680105 7.729520026 8.144096629 158448769 pstB Stress Phosphate limitation Coprococcus eutactus ATCC 27759 7.376882796 7.153123143 6.768055214 7.020415918 7.683949636 209542656 sigma_32 Stress Sigma factors Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 7.422996299 7.620043705 7.892319947 7.547828469 7.546016294 7.448732593 63081880 nosZ Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 6.778338469 7.187611974 113939640 xylA Carbon cycling Carbon degradation Hemicellulose Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 7.269110814 7.676057882 7.624729464 7.195665125 7.284754613 7.724484638 60650987 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.173497716 7.400383182 6.937332583 7.753373346 94550680 pilin virulence pilin Candidatus Koribacter versatilis Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 6.993627596 6.923002853 6.625523386 7.352494732 7.24920289 7.281329687 68165858 katE Stress Oxygen stress Taiwanofungus camphoratus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Taiwanofungus; 7.427704998 7.754191213 7.323199744 6.9396485 7.37602573 7.739608377 116611919 pimF Organic Remediation Aromatics Aromatic carboxylic acid Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.630737171 7.556252025 7.322245597 7.639758037 46307840 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.078405989 7.513136013 7.161107554 6.725213569 7.629715693 7.096544253 6.82558672 28807405 ChrA Metal Resistance Chromium Vibrio parahaemolyticus RIMD 2210633 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.036519298 7.025267458 41325422 alkK Organic Remediation Others Corynebacterium glutamicum ATCC 13032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 7.57557499 7.287671194 7.340083785 7.473934141 260620274 pstC Stress Phosphate limitation Bacteroides finegoldii DSM 17565 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides finegoldii; 7.785474446 7.884190482 8.364196197 8.159555895 7.858649271 88608535 pstB Stress Phosphate limitation Neorickettsia sennetsu str. Miyayama 7.257665402 7.062181406 35210564 ArsC Metal Resistance Arsenic Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 7.112901386 6.99734741 91777607 nagG Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.562551032 7.620929271 152938366 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.432879733 7.803092885 7.17472515 7.203943068 7.802689234 7.217387268 7.422626842 163259434 cbdA Organic Remediation Aromatics Chlorinated aromatics Bordetella petrii 7.567791363 7.759163669 7.593787373 7.765674351 7.823764802 115375727 sigma_24 Stress Sigma factors Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 6.658482264 7.061970168 256423199 fnr Stress Oxygen stress Chitinophaga pinensis DSM 2588 7.141431435 7.080599166 7.232256241 6.875498525 7.419583641 471089 CadA Metal Resistance Cadmium Arabidopsis thaliana superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Streptophyta;order:Brassicales;family:Brassicaceae;genus:Arabidopsis; 7.645664386 7.51166049 7.423140002 7.397070305 83951483 sigma_70 Stress Sigma factors Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 7.375217884 7.276974021 7.317143556 7.211076207 226325077 obgE Stress Radiation stress Coprococcus comes ATCC 27758 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Coprococcus;species:Coprococcus comes; 7.325336407 7.32056264 7.221203611 7.655845158 119450941 pimF Organic Remediation Aromatics Aromatic carboxylic acid marine gamma proteobacterium HTCC2143 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 6.786256435 7.134012598 6.897447878 7.345954595 85816865 fnr Stress Oxygen stress Dokdonia donghaensis MED134 7.14186566 7.212567446 163793207 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 7.3959604 7.388335421 7.360960749 39976535 ara_fungi Carbon cycling Carbon degradation Hemicellulose Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 7.468523809 7.167789637 7.637351901 7.377827435 7.542144762 7.06540048 7.302761679 172057748 amyA Carbon cycling Carbon degradation Starch Exiguobacterium sibiricum 255-15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 6.919762931 6.771024039 222081658 nitA Organic Remediation Aromatics Other aromatics Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.019963589 7.029793395 150014856 rubisco Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 8.108291614 8.235248847 7.8144569 7.712083516 7.996841795 8.355024373 16264794 ara Carbon cycling Carbon degradation Hemicellulose Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 7.220467514 7.314686658 7.059324442 7.373204523 117609994 oxyR Stress Oxygen stress Magnetococcus sp. MC-1 superkingdom:Bacteria;phylum:Proteobacteria;genus:Magnetococcus; 7.34899273 7.764111523 7.34862401 7.658893802 7.974916251 7.585388581 7.417821428 7.824808345 192808122 ChrA Metal Resistance Chromium Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.065324589 7.290460928 49238992 MFS_antibiotic Antibiotic resistance transporter Bartonella henselae str. Houston-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella henselae; 7.43483816 7.237396197 6.819056906 7.548316267 1143383 iro virulence Aeromonas salmonicida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas; 7.491157638 7.736925038 7.326811383 7.450066257 8.072507783 211638163 B_lactamase_A Antibiotic resistance Beta-lactamases Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus asymbiotica; 7.02814306 7.204483627 6.782294614 7.422888979 6.910918309 6.885948492 82701933 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira;species:Nitrosospira multiformis; 7.395136709 7.028958165 6.853636208 7.088978141 86164678 TehB Metal Resistance Tellurium Marinomonas sp. MED121 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 7.078873987 7.165234906 196482314 tfdA Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 6.960365958 7.794722919 189204494 nagG Organic Remediation Aromatics Aromatic carboxylic acid Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7.378741949 7.186485597 7.315102255 7.224654401 7.427698178 7.076251671 212699254 ara Carbon cycling Carbon degradation Hemicellulose Bacteroides finegoldii DSM 17565 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides finegoldii; 6.889698783 7.358310257 145296679 pheA Organic Remediation Aromatics Other aromatics Corynebacterium glutamicum R superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 7.030771786 7.154382727 7.279693625 7.562692678 151561410 phn Organic Remediation Herbicides related compound Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 7.407955821 7.621800497 22036060 bphA Organic Remediation Aromatics Polycyclic aromatics Rhodococcus sp. YK2 7.678152538 7.690089889 7.297745609 7.452442622 7.600186556 7.678541529 116748587 narI Stress Oxygen limitation Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 7.53794197 7.579700076 7.092623611 7.770998439 7.582419494 7.454176239 7.509616678 110633112 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 7.736585865 7.605793731 7.253033524 8.2034278 7.559064889 7.688615301 7.827919339 7.930282967 151302340 APS_AprA Sulphur adenylylsulfate reductase Thermodesulforhabdus norvegica superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Thermodesulforhabdus; 6.834550827 6.830093029 83415007 phenol_oxidase Carbon cycling Carbon degradation Lignin Termitomyces sp. NS/Mg superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Termitomyces; 7.305235823 7.274147458 7.37813443 7.52498978 7.828267474 7.899525266 7.783402661 7.364887434 34419309 T4_recomb_endonuclease Bacteria phage REPLICATION Vibrio phage KVP40 order:Caudovirales;family:Myoviridae;genus:T4-like viruses;species:Vibrio phage nt-1 sensu lato; 7.328242742 7.579328347 7.486727862 7.038913682 7.780232561 7.686397332 7.413314997 7.556435583 196211800 pstB Stress Phosphate limitation Geobacillus sp. G11MC16 7.779369186 7.630524173 7.645693613 7.86233549 7.319782621 7.116901468 7.578327957 145961559 ArsC Metal Resistance Arsenic Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 6.890596323 6.742337897 113876425 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 7.520954467 7.617562611 7.148701046 6.735234326 7.484689778 7.444568384 160361139 alkH Organic Remediation Other Hydrocarbons Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.208901931 7.254545263 7.484983698 7.09726652 85111326 Catechol Organic Remediation Aromatics Other aromatics Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 7.405440805 7.500063377 7.731443195 7.125348215 7.418417981 7.322475755 7.630437572 39997654 ppx Phosphorus Phosphorus utilization Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 7.58506258 7.593855401 7.33055791 7.585386805 7.758613584 7.741883186 7.602972487 78210749 tphB Organic Remediation Aromatics Aromatic carboxylic acid Comamonas sp. E6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 7.563148424 7.537475456 7.343397852 7.720692588 7.493164676 7.314399244 14719377 ChnA Organic Remediation Other Hydrocarbons Brevibacterium sp. HCU superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium; 7.353614603 7.67630787 7.324073927 7.602120178 91695313 fnr Stress Oxygen stress Polaromonas sp. JS666 7.43092623 7.209739717 7.176177985 7.543708244 7.220650441 7.611809382 282567511 type_III_secretion virulence secretion Providencia rustigianii DSM 4541 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 7.554707281 7.516346131 94470909 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.307249973 7.092669166 69246631 ArsC Metal Resistance Arsenic Enterococcus faecium DO superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus faecium; 7.460357538 7.413703122 6.702926596 7.76403124 220906426 CopA Metal Resistance Copper Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 6.932700495 7.305310337 118166518 CDH Carbon cycling Carbon degradation Cellulose Mycobacterium avium 104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 7.227876453 7.644444961 7.582092937 6.84565183 7.704289738 7.209321125 7.166635601 7.613340975 70729314 MATE_antibiotic Antibiotic resistance transporter Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 6.776599071 7.161347433 6.831888544 6.9085596 257777269 hly virulence hemolysin Desulfotomaculum acetoxidans DSM 771 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum acetoxidans; 6.966780128 6.964721513 227348070 obgE Stress Radiation stress Corynebacterium pseudogenitalium ATCC 33035 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium pseudogenitalium; 7.430759999 7.287840642 7.416378225 7.178876589 91786533 pcaG Organic Remediation Aromatics Other aromatics Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 8.050013391 7.89311226 8.053984656 8.200878 8.179495097 115361287 oxdB Organic Remediation Aromatics Nitoaromatics Burkholderia cepacia AMMD superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 7.76853566 8.539641037 8.090379357 8.09908676 7.891240616 13815931 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sulfolobus solfataricus P2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus;species:Sulfolobus solfataricus; 7.38052381 7.25562267 7.627622909 7.663441245 18376627 B_lactamase_C Antibiotic resistance Beta-lactamases Enterobacter cancerogenus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 7.471536396 7.740982532 7.44814321 7.048204075 7.978996493 7.411768038 7.870814287 52549729 glnA Stress Nitrogen limitation uncultured archaeon GZfos31B6 7.611061687 7.299056706 142851305 phoA Stress Phosphate limitation Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 7.104516197 7.507901551 7.217319715 6.886750585 7.39541422 7.12596744 6.933177253 238758634 phoA Stress Phosphate limitation Yersinia aldovae ATCC 35236 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia aldovae; 7.830318332 7.423446641 7.593601364 7.560762917 7.970752453 1653587 phtA Organic Remediation Aromatics Aromatic carboxylic acid Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 7.117972471 7.003609207 192287259 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.420637777 7.347148209 53758193 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 7.267579944 7.598854055 91791075 pcc Carbon cycling Carbon fixation Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 7.188339135 7.450046241 7.096661403 7.015183347 155968609 cap virulence capsule Klebsiella pneumoniae 7.213814473 7.344332194 7.031483609 7.270451353 7.40008086 71283718 nifH Nitrogen Nitrogen fixation Prosthecochloris vibrioformis DSM 265 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeovibrioides; 7.629834154 7.152391654 7.066054865 7.624170234 89343770 bclA Organic Remediation Aromatics Aromatic carboxylic acid Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 8.05881906 8.149511659 8.427143634 8.091212206 8.032890939 7.943508457 8.247901335 170692352 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 7.239475306 7.032757231 219549784 hly virulence hemolysin Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.531746815 7.704713112 7.739195959 7.709952561 7.521914299 7.636794216 7.856307278 89052669 BchY other category chlorophyllide reductase Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 6.907488755 7.305277447 7.508152245 114321282 fnr Stress Oxygen stress Alkalilimnicola ehrlichii MLHE-1 7.704974339 7.79361455 7.466026211 7.756906258 8.203171485 7.84581491 7.645068185 7.950720302 156111125 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 7.346001856 7.092385958 154496314 ChrA Metal Resistance Chromium Bacteroides capillosus ATCC 29799 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides capillosus; 7.020196827 7.059913394 6.507971669 7.389480252 255039389 oxyR Stress Oxygen stress Dyadobacter fermentans DSM 18053 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 7.072987595 7.166192066 7.402541617 7.073879768 7.35398002 110637540 fnr Stress Oxygen stress Cytophaga hutchinsonii ATCC 33406 7.384914534 7.298562065 7.32650248 7.217784395 7.821045504 7.614257512 7.471600667 114740501 AceB Carbon cycling Carbon degradation others Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 7.254053074 7.747122359 7.948161731 7.525437973 7.758433624 7.474777344 7.535563727 7.552815129 40253103 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.397744576 7.548843247 7.596913098 7.786919382 212671445 pcaG Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 7.533250677 7.845812286 8.018315811 7.934331057 8.033791757 8.240649921 8.018078725 8.547542292 258544119 toxin virulence toxin Cardiobacterium hominis ATCC 15826 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Cardiobacteriales;family:Cardiobacteriaceae;genus:Cardiobacterium;species:Cardiobacterium hominis; 7.26027365 7.361402555 7.474709768 7.566059302 28870010 nahA Organic Remediation Aromatics Polycyclic aromatics Pseudomonas syringae pv. tomato str. DC3000 7.308065597 7.283215843 6.991705986 6.97969183 196112363 ahpF Stress Oxygen stress Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 6.946933973 7.450437705 86750308 ppx Phosphorus Phosphorus utilization Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.442240452 7.756701431 7.7198325 7.396900561 8.114693771 7.893450966 7.650636365 56315209 ppx Phosphorus Phosphorus utilization Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 7.780629573 7.51240754 7.122132256 7.385450789 150384852 pstB Stress Phosphate limitation Victivallis vadensis ATCC BAA-548 7.424281912 7.555336837 7.494949236 7.150440631 260887956 narI Stress Oxygen limitation Selenomonas sputigena ATCC 35185 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sputigena; 7.719232322 7.456080648 7.207905765 7.357550212 7.653192097 7.166753049 7.261694432 163746717 sox Sulphur Sulphur oxidation Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 6.90954705 7.078882016 6.893925996 7.391709485 183976696 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6.877011812 7.041305681 170104262 glx Carbon cycling Carbon degradation Lignin Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 6.98181562 7.059666836 6.634077998 7.622856113 6.933988017 7.594161791 51242697 phenol_oxidase Carbon cycling Carbon degradation Lignin Lentinula edodes superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Lentinula; 7.101925703 7.536067286 7.434869504 7.138404816 262350707 pstS Stress Phosphate limitation Vibrio sp. RC586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 6.964645681 7.368310549 7.182467443 7.328861331 214045554 exaA Organic Remediation Chlorinated solvents Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.721577648 7.529024512 241664238 obgE Stress Radiation stress Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 7.549624185 7.654077277 7.405921298 7.282015886 7.595513784 7.450260142 7.460794241 28270655 ctsR Stress Protein stress Lactobacillus plantarum WCFS1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus plantarum; 7.354768978 7.269191236 6.924177408 7.29447364 7.399485983 7.527507937 38503493 mcrA Carbon cycling Methane Methane production uncultured euryarchaeote superkingdom:Archaea;phylum:Euryarchaeota; 7.381533107 7.493787106 7.30670232 7.427724843 7.846434943 7.503649086 85699556 pstB Stress Phosphate limitation Nitrobacter sp. Nb-311A 7.023052313 7.24166746 6.828684913 7.583587162 6.823057811 6.982491363 86569920 clpC Stress Protein stress Frankia sp. CcI3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 7.605445235 7.674540861 7.668195761 7.311301371 7.40082785 116492662 dnaK Stress Heat shock Pediococcus pentosaceus ATCC 25745 6.701479042 6.994614447 114565054 AceB Carbon cycling Carbon degradation others Shewanella frigidimarina NCIMB 400 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella frigidimarina; 6.778118423 7.142398804 6.952239075 7.182370789 66876304 phtA Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. TFB superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7.012994299 7.112695961 6.676486656 7.077646882 7.65208066 7.039268531 7.144090705 255259965 fnr Stress Oxygen stress Sideroxydans lithotrophicus ES-1 7.339820589 7.540482877 7.569284638 7.112657216 7.819613388 7.30829867 7.159585238 15922097 peroxiredoxin Bioleaching Metal Resistance Sulfolobus tokodaii str. 7 6.779629228 7.482189247 7.184544086 7.146026491 118469757 glnA Stress Nitrogen limitation Mycobacterium smegmatis str. MC2 155 7.394177833 7.343308235 7.446217106 7.563742215 255269456 ara Carbon cycling Carbon degradation Hemicellulose Bryantella formatexigens DSM 14469 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;species:Bryantella formatexigens; 7.488813933 7.304667881 7.291996559 7.143855254 7.801097163 7.47242279 7.247275459 7.735962928 37651641 scaffold Bacteria phage STRUCTURAL Aeromonas phage 44RR2.8t order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.048499592 7.120164644 134094891 fnr Stress Oxygen stress Herminiimonas arsenicoxydans 7.902994505 7.811910191 7.976187623 8.115678159 7.893933599 8.007605272 8.068403292 8.08666991 169188314 SMR_antibiotics Antibiotic resistance transporter Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.141710735 6.983344411 259347169 fnr Stress Oxygen stress Silicibacter sp. TrichCH4B 6.871708356 7.848187356 7.065324447 7.249706587 148837034 pilin virulence pilin Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 6.666487627 6.95431881 218672469 AceB Carbon cycling Carbon degradation others Rhizobium etli GR56 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.151895774 6.99718607 111185878 gyrB other category gyrB Rhodococcus equi superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7.260745406 7.407682666 7.163865492 6.771036572 7.584874643 238936109 katE Stress Oxygen stress Lachancea thermotolerans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Lachancea; 8.037128221 8.354595838 7.608680322 8.271427024 8.276646453 8.265855354 8.461165839 116328630 glnA Stress Nitrogen limitation Leptospira borgpetersenii serovar Hardjo-bovis L550 7.225426482 7.205738849 7.343485483 7.037433663 7.157236195 7.317982586 7.397783482 148977856 pilin virulence pilin Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 6.742678 6.883894681 229735508 B_lactamase_C Antibiotic resistance Beta-lactamases Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 7.301964091 7.713734814 7.786567138 7.344389281 7.769421881 7.478958547 7.212771247 8.071695056 120592414 fnr Stress Oxygen stress Polaromonas naphthalenivorans CJ2 7.087782537 7.599940975 7.076124183 7.117882459 7.675099185 7.349511373 7.847116679 7.50341196 212558025 oxyR Stress Oxygen stress Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 7.130380401 7.058412315 115376296 pilin virulence pilin Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 7.278681526 7.510884513 7.680047423 7.333870369 7.2037891 7.438438687 7.195165235 209525810 sigma_70 Stress Sigma factors Arthrospira maxima CS-328 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira maxima; 7.144716482 7.079691387 283779048 sigma_24 Stress Sigma factors Pirellula staleyi DSM 6068 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Pirellula;species:Pirellula staleyi; 7.592759687 7.900539118 7.644018441 7.426428888 8.171588196 7.503074383 7.746501372 46307965 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6.534388177 7.226413626 6.552062862 7.305445077 165880055 exoglucanase Carbon cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.443558905 7.224074684 89199975 TerZ Metal Resistance Tellurium Bacillus cereus subsp. cytotoxis NVH 391-98 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cytotoxicus; 7.414700227 7.013877217 27657634 ChnE Organic Remediation Other Hydrocarbons Rhodococcus sp. Phi2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7.228800031 7.256549287 86609696 ahpC Stress Oxygen stress Synechococcus sp. JA-2-3B'a(2-13) superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.363264829 7.561965971 7.457246693 7.637705941 151574799 ChrA Metal Resistance Chromium Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 7.171465655 6.980518521 6.518422348 7.08065126 7.728810438 196190595 phn Organic Remediation Herbicides related compound Synechococcus sp. PCC 7335 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.635496842 7.517005891 7.557485061 7.409167649 7.796181904 7.616072204 7.931049849 189421138 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 7.301238976 7.125093983 104345690 helicase_family_4 Bacteria phage REPLICATION Aeromonas salmonicida bacteriophage 25 7.690251455 7.496786247 7.485694782 7.844941581 7.514446837 7.545197549 159043180 pstB Stress Phosphate limitation Dinoroseobacter shibae DFL 12 7.710422468 7.52657536 7.31164379 7.634300936 7.357347269 7.435528638 7.654753885 91692446 ArsC Metal Resistance Arsenic Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.905586009 8.378198894 8.465401351 8.795611232 8.397246823 9.226204924 9.247062074 8.772992673 124515252 ABC_transporter_II Bioleaching other category Leptospirillum sp. Group II UBA 6.945601248 7.362057908 7.317847449 6.963394296 253576431 sigma_24 Stress Sigma factors Paenibacillus sp. oral taxon 786 str. D14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 7.420895205 7.258947049 6.967696865 7.329434731 7.186073339 222526487 gyrB other category gyrB Chloroflexus sp. Y-400-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus; 7.491766099 7.350351613 7.408491492 7.838615011 67517702 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.460493847 7.594916178 7.172107932 7.628971022 7.844072388 7.450012631 7.744084048 254469782 ureC Nitrogen Ammonification Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 7.6179306 7.331463035 7.849858005 7.53958876 7.542393818 7.73092872 73533917 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.409608111 7.463071169 7.292399859 7.612695229 23099198 cspB Stress Cold shock Oceanobacillus iheyensis HTE831 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Oceanobacillus;species:Oceanobacillus iheyensis; 7.351647533 7.162875785 7.087038234 7.616907849 7.751502018 7.505010471 7.628526984 7.551262393 237748207 B_lactamase_A Antibiotic resistance Beta-lactamases Oxalobacter formigenes OXCC13 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Oxalobacter;species:Oxalobacter formigenes; 7.332065074 7.23379739 150836563 CopA Metal Resistance Copper Marinomonas sp. MWYL1 6.979160087 6.987412492 187604777 amyA Carbon cycling Carbon degradation Starch Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 6.721563317 6.802034684 6.491388323 7.188723859 126355396 nitA Organic Remediation Aromatics Other aromatics Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.461088477 7.361433862 7.342000777 6.971307822 148550668 limEH Carbon cycling Carbon degradation Others Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 7.270519535 7.110583729 114308756 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Nitrosomonas eutropha C71 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas eutropha; 7.409708787 7.241178277 7.444994967 7.544303094 7.334014912 32895082 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.235503041 7.12873156 6.897339581 7.49049281 24193336 gyrB other category gyrB Leptospira interrogans serovar Lai str. 56601 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira interrogans; 7.244547845 7.693735432 6.958168183 7.52539447 7.58703558 7.382629574 7.485083377 7.836211327 157400652 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 7.468403056 7.424153797 7.252822516 7.864047266 7.313140027 7.083968374 7.892833795 115402351 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.462616847 7.480728222 7.121459428 7.437678598 7.565960977 7.209999413 221194538 ahpC Stress Oxygen stress Atopobium rimae ATCC 49626 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Atopobium;species:Atopobium rimae; 7.212601249 7.253280773 254186861 type_III_secretion virulence secretion Burkholderia pseudomallei Pasteur 52237 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 7.196505708 7.587022762 7.329394791 7.361020137 222153839 ctsR Stress Protein stress Streptococcus uberis 0140J superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus uberis; 7.165539872 7.676387822 7.493240993 7.260113678 7.710213614 7.086510967 7.412475752 7.437984142 261343450 fnr Stress Oxygen stress Providencia rustigianii DSM 4541 7.052279267 7.006840562 13259305 mcrA Carbon cycling Methane Methane production uncultured methanogen RS-ME33 superkingdom:Archaea;phylum:Euryarchaeota; 7.963336443 7.775011862 7.34231075 7.752752565 7.873799948 7.417638373 7.913623165 256775425 katE Stress Oxygen stress Streptomyces hygroscopicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces hygroscopicus; 9.191342166 9.032537928 118000353 phtA Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 6.970634904 7.125841605 6.770527615 7.43288905 255063720 glx Carbon cycling Carbon degradation Lignin Nitrosomonas sp. AL212 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 6.886210529 6.983142376 257797930 hly virulence hemolysin Desulfohalobium retbaense DSM 5692 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium;species:Desulfohalobium retbaense; 6.932757603 7.367498238 29540964 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Coxiella burnetii RSA 493 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Coxiellaceae;genus:Coxiella;species:Coxiella burnetii; 6.796979949 7.568610909 229213008 grpE Stress Heat shock Dethiosulfovibrio peptidovorans DSM 11002 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Dethiosulfovibrio;species:Dethiosulfovibrio peptidovorans; 7.104559064 7.587396543 7.370469667 7.359576521 221565482 nrfA Nitrogen Dissimilatory N reduction Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 6.843219844 6.848789068 187735438 ppx Phosphorus Phosphorus utilization Akkermansia muciniphila ATCC BAA-835 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Akkermansia;species:Akkermansia muciniphila; 7.30065453 7.042212927 7.488425842 7.851466526 94425128 pstB Stress Phosphate limitation Sphingomonas sp. SKA58 7.044435608 7.687531385 255297444 obgE Stress Radiation stress Corynebacterium tuberculostearicum SK141 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium tuberculostearicum; 7.642731689 7.145465926 7.38122805 7.008741656 55775744 ureC Nitrogen Ammonification uncultured bacterium superkingdom:Bacteria; 7.151295185 7.45229844 77378489 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 6.534616755 7.452379286 6.961202835 7.165888411 75907489 nmoA Organic Remediation Aromatics Nitoaromatics Anabaena variabilis ATCC 29413 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena variabilis; 7.01906702 7.434872721 238720128 iuc virulence aerobactin Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 6.676061133 7.3169875 120605524 iro virulence Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 7.034559017 6.875481832 3059202 bphC Organic Remediation Aromatics Polycyclic aromatics Rhodococcus erythropolis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 6.922354638 7.37173812 7.210721362 7.496474106 7.44538894 157283823 pilin virulence pilin Escherichia coli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 7.096723238 7.373881357 144898023 aclB Carbon cycling Carbon fixation Magnetospirillum gryphiswaldense MSR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 7.513663448 7.820673758 213963748 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Capnocytophaga sputigena Capno superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga sputigena; 6.787329132 7.442024257 229060920 phoA Stress Phosphate limitation Bacillus cereus AH603 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 7.037345236 7.831601144 117608961 sox Sulphur Sulphur oxidation Magnetococcus sp. MC-1 superkingdom:Bacteria;phylum:Proteobacteria;genus:Magnetococcus; 7.46931238 7.452553994 7.257819982 7.741216187 7.673954342 254500347 sigma_24 Stress Sigma factors Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 7.476762951 7.546385337 7.484214099 7.665437604 227271377 glnA Stress Nitrogen limitation Kribbella flavida DSM 17836 7.8695901 8.092243127 7.299157394 7.351948886 81251098 gyrB other category gyrB Nitrosomonas sp. CNS332 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 7.382396414 7.914182002 7.023804208 7.657395919 21623498 nosZ Nitrogen Denitrification Pseudomonas sp. MT-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.315793055 6.723226354 119387117 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 7.736798387 7.27129867 7.589044775 7.465496237 7.415614274 8.099453972 147736244 fnr Stress Oxygen stress Thermotoga petrophila RKU-1 6.696651518 6.627643245 142001067 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.133134344 7.409385588 111918675 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 6.832586757 7.259086784 89055409 glnA Stress Nitrogen limitation Jannaschia sp. CCS1 7.217341308 7.479177186 157963388 cytochrome Energy process Energy process Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 6.910032837 7.641447453 238712813 B_lactamase_C Antibiotic resistance Beta-lactamases Yersinia bercovieri ATCC 43970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 7.202829213 6.665549565 121605013 cbdA Organic Remediation Aromatics Chlorinated aromatics Polaromonas naphthalenivorans CJ2 7.190803439 7.719820676 126035115 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 6.845110863 7.495718492 116688011 mcrA Carbon cycling Methane Methane production Methanosarcinaceae archaeon ZC-1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methermicoccaceae;genus:Methermicoccus; 7.342094353 7.217346382 7.575310837 157083036 dmsA Organic Remediation Others Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 7.133194912 6.921049247 16410502 CadA Metal Resistance Cadmium Listeria monocytogenes 7.15311495 7.54087801 116106596 SMR_antibiotics Antibiotic resistance transporter Lactococcus lactis subsp. cremoris SK11 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Lactococcus;species:Lactococcus lactis; 7.266636454 7.604797788 7.816265333 8.058842626 7.862339482 8.09821649 2978568 rubisco Carbon cycling Carbon fixation Riftia pachyptila endosymbiont superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.071588495 6.847787249 7.677669886 34499921 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.151139453 7.498628513 221533447 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 7.120544495 7.195846597 7.280226299 7.516927158 7.563381191 227485802 ahpC Stress Oxygen stress Anaerococcus lactolyticus ATCC 51172 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Anaerococcus;species:Anaerococcus lactolyticus; 7.20888858 7.480069036 7.655925331 7.438940389 7.911457593 3413304 exochitinase Carbon cycling Carbon degradation Chitin Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 7.103233763 7.618914628 74038368 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 6.697857374 7.330609999 229541805 proV Stress Osmotic stress Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 7.494761993 7.567440559 21244966 xylanase Carbon cycling Carbon degradation Hemicellulose Xanthomonas axonopodis pv. citri str. 306 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas axonopodis; 6.647903915 6.871942495 7.265235441 247543438 endochitinase Carbon cycling Carbon degradation Chitin Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.523303255 7.424035685 8.097704204 7.581727459 7.433792146 8.256371669 125497164 atzA Organic Remediation Herbicides related compound Streptococcus sanguinis SK36 7.392334319 7.325674939 115397327 tfdA Organic Remediation Aromatics Chlorinated aromatics Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 6.8012986 6.613002438 87281205 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.012122078 7.807777889 153004428 sigma_24 Stress Sigma factors Anaeromyxobacter sp. Fw109-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 7.308554924 7.874513265 68232047 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 7.847912938 7.48442053 8.06800947 7.477470144 7.631504377 7.388927537 123964118 alkK Organic Remediation Others Prochlorococcus marinus str. MIT 9303 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 6.825885693 6.75480102 7.4513879 6.891652207 7.451454332 56459808 ArsA Metal Resistance Arsenic Idiomarina loihiensis L2TR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina loihiensis; 7.00078458 7.290420129 118702810 tftH Organic Remediation Aromatics Chlorinated aromatics Sphingomonas wittichii RW1 7.308923804 7.231938571 7.71975914 7.812163725 7.605140299 238792301 MATE_antibiotic Antibiotic resistance transporter Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 7.278106944 7.518003145 109699047 SMR_antibiotics Antibiotic resistance transporter Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 7.421860878 7.605899899 83647052 atzA Organic Remediation Herbicides related compound Hahella chejuensis KCTC 2396 6.958985419 7.270662076 151302205 APS_AprB Sulphur adenylylsulfate reductase Desulfobacter postgatei superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacter; 7.082719151 7.577138931 262352219 pilin virulence pilin Vibrio sp. RC586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.265572398 7.145877431 215457723 chnB Organic Remediation Other Hydrocarbons Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 6.822911049 7.563859121 124488195 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.433215539 7.865206894 84684898 hly virulence hemolysin Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.354287389 7.764503572 99030505 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 7.105170409 7.260095504 70982827 ChrA Metal Resistance Chromium Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 7.096780997 7.075234106 7.667914531 114335877 SMR_antibiotics Antibiotic resistance transporter Shewanella frigidimarina NCIMB 400 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella frigidimarina; 6.91886872 7.53999188 7.945418431 7.238869512 7.503863261 157318432 dmsA Organic Remediation Others Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 7.838952896 7.982238107 7.478426756 7.361515015 7.577258499 153008104 pstB Stress Phosphate limitation Ochrobactrum anthropi ATCC 49188 6.581566391 7.723958039 257061990 ahpC Stress Oxygen stress Cyanothece sp. PCC 8802 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 6.626025429 7.60944981 119898141 pheA Organic Remediation Aromatics Other aromatics Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 6.701301373 7.348902781 90020547 ArsC Metal Resistance Arsenic Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 7.317431102 7.859072998 1480205 nmoA Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Aminobacter; 7.467977552 7.134522349 7.094678006 7.274252476 110833848 pimF Organic Remediation Aromatics Aromatic carboxylic acid Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 7.059269994 6.798900803 211582349 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 7.273942603 7.624581766 148259226 glycosyl_transferase_EPS Bioleaching EPS Acidiphilium cryptum JF-5 6.987261993 7.466473155 37526122 proO Organic Remediation Aromatics Other aromatics Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 7.3864948 7.10676334 7.597801449 85706704 FTHFS Carbon cycling Acetogenesis Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.541904126 7.437860485 213959964 TerC Metal Resistance Tellurium Propionibacterium acnes SK137 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 7.922619386 8.035538013 7.457449253 7.266089533 99083205 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 6.709401367 7.275633682 6.888992674 7.000267403 6978931 ara Carbon cycling Carbon degradation Hemicellulose Streptomyces chartreusis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7.925887252 7.467024321 257202825 phoB Stress Phosphate limitation Roseburia intestinalis L1-82 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia intestinalis; 7.096160389 7.450324215 7.453775358 7.341968702 7.422759812 7.155505647 222087080 cap virulence capsule Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 6.595736918 7.512225068 6.984863475 6.844575229 99030617 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 7.613628346 7.746633752 218433141 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Escherichia coli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 7.5187989 7.331412073 218130315 amyA Carbon cycling Carbon degradation Starch Bacteroides eggerthii DSM 20697 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides eggerthii; 7.063347237 7.110467318 171741858 mannanase Carbon cycling Carbon degradation Hemicellulose Bifidobacterium dentium ATCC 27678 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium dentium; 7.050813951 7.306057835 7.566807545 7.472883293 7.692085555 7.45826317 83317118 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.680752225 7.064952315 7.713106244 7.542397415 7.398595063 63081888 nosZ Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 7.419952623 7.902404078 7.891741493 7.544706466 7.395705162 7.706514586 16152123 dsrB Sulphur sulfite reductase Desulfomusa hansenii superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfofaba; 7.34312575 7.207306466 7.54638168 260424697 ahpF Stress Oxygen stress Dialister invisus DSM 15470 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Dialister;species:Dialister invisus; 7.086668271 6.848001391 7.567466375 7.4393349 7.649034195 68272022 mcrA Carbon cycling Methane Methane production uncultured Methanomicrobiaceae archaeon superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae; 6.942373352 6.950050417 7.658022223 227241525 ahpC Stress Oxygen stress Sphingobacterium spiritivorum ATCC 33300 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium;species:Sphingobacterium spiritivorum; 7.823090587 7.75921944 8.049363537 7.293032656 7.04838746 22023074 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 7.299831161 7.100135882 119474865 sigma_70 Stress Sigma factors marine gamma proteobacterium HTCC2143 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 6.922322266 7.370113248 226484293 sigma_70 Stress Sigma factors Enterovibrio nigricans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Enterovibrio; 7.775438504 7.160623499 8.009034364 280960577 SMR_antibiotics Antibiotic resistance transporter Frankia sp. EuI1c superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 7.017130162 7.183405376 262403177 endochitinase Carbon cycling Carbon degradation Chitin Vibrio sp. RC586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.115377502 7.015523884 7.452278795 229378013 fnr Stress Oxygen stress Oxalobacter formigenes HOxBLS 7.424379827 8.222010438 84379444 ZntA Metal Resistance Zinc Vibrio splendidus 12B01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 6.80542863 7.017918696 7.360251774 146398928 TehB Metal Resistance Tellurium Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 8.087020562 7.78835228 170698349 cap virulence capsule Burkholderia ambifaria IOP40-10 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 8.450783557 8.256772116 147848222 glnA Stress Nitrogen limitation Synechococcus sp. WH 7803 7.015357228 7.363079933 7.308609871 7.370570335 7.533609984 76884526 mer Metal Resistance Mercury Nitrosococcus oceani ATCC 19707 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 7.843396511 7.624829398 7.79547416 283781338 sigma_70 Stress Sigma factors Pirellula staleyi DSM 6068 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Pirellula;species:Pirellula staleyi; 7.105115593 7.42493789 7.436506861 7.569044544 7.37163822 47717501 helicase_P4alpha_type Bacteria phage REPLICATION Burkholderia cenocepacia phage BcepB1A order:Caudovirales;family:Myoviridae; 7.004338523 7.270576338 56962490 narH Stress Oxygen limitation Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 6.469041162 7.611633015 219675894 oxyR Stress Oxygen stress gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.051330359 7.264240138 7.156926316 7.312786777 148265123 MFS_antibiotic Antibiotic resistance transporter Geobacter uraniireducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 7.190335907 7.285837749 77384018 MFS_antibiotic Antibiotic resistance transporter Pseudomonas fluorescens Pf0-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.782753385 7.307489707 7.608121392 7.547805176 7.722790749 8.243283063 126173208 pilin virulence pilin Shewanella baltica OS155 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 6.95863652 7.631442958 118469296 nitA Organic Remediation Aromatics Other aromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 7.265557256 7.718589387 7.403129812 7.591168288 7.747204567 50871516 gyrB other category gyrB Pseudomonas stutzeri superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.432251625 7.118235488 7.594976332 7.415295825 7.367497767 161087527 katA Stress Oxygen stress Staphylococcus vitulinus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus; 6.717174874 6.555970199 7.335516342 259347767 glnA Stress Nitrogen limitation Silicibacter sp. TrichCH4B 7.371045495 7.355180468 85711716 ArsC Metal Resistance Arsenic Idiomarina baltica OS145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina baltica; 6.925606644 7.44440465 6.947807541 6.816193319 256797322 sigma_32 Stress Sigma factors Kangiella koreensis DSM 16069 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Kangiella;species:Kangiella koreensis; 7.140869001 7.583005947 254425160 ureC Nitrogen Ammonification Synechococcus sp. PCC 7335 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 6.96291686 6.868222897 157960581 ChrA Metal Resistance Chromium Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 7.046814994 7.984050911 7.425208687 7.637266411 7.989103174 22299276 dnaK Stress Heat shock Thermosynechococcus elongatus BP-1 7.363745697 7.61463043 7.47888643 7.340988065 7.542417412 151360019 gyrB other category gyrB Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 6.977969374 7.510412996 7.314719533 7.283486923 7.379357517 22298199 ZntA Metal Resistance Zinc Thermosynechococcus elongatus BP-1 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Thermosynechococcus;species:Thermosynechococcus elongatus; 7.486006676 7.508597187 116804590 nasA Nitrogen Assimilatory N reduction uncultured prokaryote 7.597189616 7.214566069 8.011174856 7.139297851 7.502243991 7.457981696 192800892 adpB Organic Remediation Pesticides related compound Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.266503967 7.371413408 7.626793173 7.458235299 7.562023985 78495246 CopA Metal Resistance Copper Rhodopseudomonas palustris BisB18 7.073139772 7.156388476 156189425 cmuA Organic Remediation Chlorinated solvents Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 6.752862441 7.175527831 6.914119954 7.167905924 162707912 Catechol Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 7.103590205 7.637442689 7.510829066 7.488529471 7.52864475 145234819 pheA Organic Remediation Aromatics Other aromatics Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.258695298 7.677464728 7.747733683 3821797 exochitinase Carbon cycling Carbon degradation Chitin Bacillus circulans 7.412059379 7.669364463 7.606408814 7.707021362 212540260 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 6.856957239 6.802121183 13815793 pcpE Organic Remediation Herbicides related compound Sulfolobus solfataricus P2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus;species:Sulfolobus solfataricus; 7.840677431 7.574097216 7.698400682 7.612763669 83941753 pstB Stress Phosphate limitation Sulfitobacter sp. EE-36 7.244801535 7.614799182 67154108 amyA Carbon cycling Carbon degradation Starch Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 7.711243723 7.460721748 149375998 fnr Stress Oxygen stress Marinobacter algicola DG893 7.385011009 7.759002469 8.183095203 7.418232101 7.54161708 222878240 fnr Stress Oxygen stress Campylobacter rectus RM3267 6.860940272 6.642360113 148553752 bclA Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 7.374420726 7.851518992 56787885 pcaG Organic Remediation Aromatics Other aromatics Novosphingobium subarcticum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 7.183077795 7.093872928 7.797297663 7.346972736 7.125091134 7.603882664 189200384 AceB Carbon cycling Carbon degradation others Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7.16892087 6.990297686 223961989 obgE Stress Radiation stress Holdemania filiformis DSM 12042 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichi;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Holdemania;species:Holdemania filiformis; 7.425548134 7.115872908 7.985278301 56680587 nagI Organic Remediation Aromatics Aromatic carboxylic acid Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 7.405454792 7.809026848 7.493741742 7.101024562 7.411861458 172041825 mnp Carbon cycling Carbon degradation Lignin Heterobasidion annosum superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Russulales;family:Bondarzewiaceae;genus:Heterobasidion; 7.384805865 7.155867709 161347549 obgE Stress Radiation stress Syntrophus aciditrophicus SB 7.729539223 7.755273616 194349630 hly virulence hemolysin Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 6.982211618 7.344837388 7.215313329 6.846942854 116099283 grpE Stress Heat shock Lactobacillus brevis ATCC 367 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus brevis; 7.614339807 7.799080554 8.502381338 149186178 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Erythrobacter sp. SD-21 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 7.293268729 7.766971287 68264688 katA Stress Oxygen stress Corynebacterium jeikeium K411 7.832207556 7.535432557 7.482398257 7.361331232 254000193 glnA Stress Nitrogen limitation Methylovorus sp. SIP3-4 7.563620173 7.586364901 256715795 sigma_70 Stress Sigma factors Lactobacillus coleohominis 101-4-CHN 7.440194546 7.892890133 7.532291996 7.73515195 120555755 pimF Organic Remediation Aromatics Aromatic carboxylic acid Marinobacter aquaeolei VT8 7.059767944 7.831844336 121637644 narI Stress Oxygen limitation Mycobacterium bovis BCG str. Pasteur 1173P2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium bovis; 7.851409001 7.586697884 146400821 glycosyl_transferase_EPS Bioleaching EPS Acidiphilium cryptum JF-5 7.470244168 7.884766458 133739718 dnaK Stress Heat shock Herminiimonas arsenicoxydans 7.015357228 7.406392634 82501048 ara Carbon cycling Carbon degradation Hemicellulose Caldicellulosiruptor saccharolyticus DSM 8903 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Caldicellulosiruptor;species:Caldicellulosiruptor saccharolyticus; 6.939925408 7.302014885 169609496 glnA Stress Nitrogen limitation Phaeosphaeria nodorum SN15 7.190935214 7.480845039 14523782 fnr Stress Oxygen stress Sinorhizobium meliloti 1021 7.106029932 7.423501288 7.005269318 6.938653238 171851878 sigma_70 Stress Sigma factors Corynebacterium urealyticum DSM 7109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium urealyticum; 7.083703797 7.039366507 17232064 pstB Stress Phosphate limitation Nostoc sp. PCC 7120 6.915338598 6.845598325 15158814 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 6.96970996 7.164904332 211905355 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.11138529 7.465389973 227349803 fnr Stress Oxygen stress Lactobacillus vaginalis ATCC 49540 7.325813623 7.750256494 63254771 TerD Metal Resistance Tellurium Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 6.706486246 7.379027806 159184520 proV Stress Osmotic stress Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.534992827 7.12854105 126105533 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.087219408 7.372514004 7.280415071 7.323269168 227484023 dsrB Sulphur sulfite reductase uncultured prokaryote 6.965635999 7.296420353 7.161294255 7.078214585 21227541 cmuA Organic Remediation Chlorinated solvents Methanosarcina mazei Go1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina mazei; 6.759189084 7.3680025 7.364986472 7.4643761 6969420 mnp Carbon cycling Carbon degradation Lignin Bondarzewia montana 6.773926095 7.575600955 84667940 vanA Carbon cycling Carbon degradation Others Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 6.650678623 7.285298226 91688644 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 7.276091105 7.296725728 7.860562032 259036602 hly virulence hemolysin Granulicatella adiacens ATCC 49175 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Carnobacteriaceae;genus:Granulicatella;species:Granulicatella adiacens; 6.610828939 7.363667254 188572665 mcrA Carbon cycling Methane Methane production uncultured archaeon superkingdom:Archaea; 6.948409127 7.598858424 214030378 pstB Stress Phosphate limitation Ruegeria sp. R11 7.202102839 7.416213731 7.535741832 255332209 clpC Stress Protein stress Geobacillus sp. Y4.1MC1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 6.948146063 7.61713169 116495560 amyA Carbon cycling Carbon degradation Starch Lactobacillus casei ATCC 334 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus casei; 7.300209387 6.839157707 70983017 linB Organic Remediation Pesticides related compound Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 7.080889987 7.029850394 224537333 ara Carbon cycling Carbon degradation Hemicellulose Bacteroides cellulosilyticus DSM 14838 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 7.495054666 7.38710728 7.280612037 7.411064232 145253198 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 6.577955964 7.259041727 167750346 hrcA Stress Heat shock Eubacterium siraeum DSM 15702 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium siraeum; 6.774565966 6.978512356 7.429681142 7.183477521 7.230391773 7.461313625 218221360 nrfA Nitrogen Dissimilatory N reduction Mitsuokella multacida DSM 20544 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Mitsuokella;species:Mitsuokella multacida; 7.108936452 7.424731985 7.688490407 7.611255138 7.217553552 7.381597508 112821115 rubisco Carbon cycling Carbon fixation Microcystis aeruginosa PCC 7806 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 7.366466515 7.228080585 7.828449389 7.467883706 7.939754214 226714741 ppx Phosphorus Phosphorus utilization Laribacter hongkongensis HLHK9 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Laribacter;species:Laribacter hongkongensis; 7.55100831 7.861864286 7.709150284 7.399114531 7.604587026 148658606 sigma_24 Stress Sigma factors Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 7.132574863 7.268911983 8.022645322 166858407 iro virulence Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.306421091 7.338601742 151302217 APS_AprB Sulphur adenylylsulfate reductase Desulfobacterium indolicum 7.469054839 7.622935911 7.880052841 7.812772935 7.294861356 7.805584176 260463162 glnA Stress Nitrogen limitation Mesorhizobium opportunistum WSM2075 7.554377271 7.187671924 7.428965366 7.29597134 7.917101229 23304328 mnp Carbon cycling Carbon degradation Lignin Heterobasidion annosum superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Russulales;family:Bondarzewiaceae;genus:Heterobasidion; 6.650068042 7.392407725 118444979 ChrA Metal Resistance Chromium Clostridium novyi NT superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium novyi; 6.738450717 7.422789679 52548642 mcrA Carbon cycling Methane Methane production uncultured archaeon GZfos18B6 superkingdom:Archaea; 6.89488981 7.339141053 111019788 mdlD Organic Remediation Aromatics Other aromatics Rhodococcus sp. RHA1 7.659734621 7.943563091 7.856293881 7.842155121 8.158973403 283795510 sigma_70 Stress Sigma factors Clostridium sp. M62/1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 7.166140641 7.413321491 7.599232298 7.063697864 28199431 iro virulence Xylella fastidiosa Temecula1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xylella;species:Xylella fastidiosa; 6.622673421 7.708017087 238544296 pmoA Carbon cycling Methane Methane oxidation uncultured methanotrophic bacterium superkingdom:Bacteria; 6.942277334 7.486616444 184196023 phtA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.385515448 7.295714719 121306334 pstC Stress Phosphate limitation Thermosinus carboxydivorans Nor1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Thermosinus;species:Thermosinus carboxydivorans; 7.151670273 6.986060869 7.814664727 115422306 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 7.618076189 7.354556191 7.47579727 7.389545726 25900718 FTHFS Carbon cycling Acetogenesis uncultured bacterium superkingdom:Bacteria; 7.386606822 7.905011222 52079167 mannanase Carbon cycling Carbon degradation Hemicellulose Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 7.880301059 7.337089657 7.126044002 7.229416253 8.025311275 115523479 CODH Carbon cycling Carbon fixation Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.440011543 7.553981768 7.950049582 260838883 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Vibrio sp. RC341 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 6.77391844 7.260607475 89087506 TerD Metal Resistance Tellurium Bacillus sp. NRRL B-14911 6.930729815 6.943501594 7.629927489 6.896575673 6.931409918 121703800 katE Stress Oxygen stress Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 6.828489935 7.105002286 18313457 dsrB Sulphur sulfite reductase Pyrobaculum aerophilum str. IM2 7.496534337 6.823578301 7.207530571 7.20264464 227548548 AceA Carbon cycling Carbon degradation others Corynebacterium lipophiloflavum DSM 44291 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium lipophiloflavum; 7.746928086 7.290690437 115421707 nagI Organic Remediation Aromatics Aromatic carboxylic acid Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 7.864708198 7.577311622 7.52135325 7.796663752 5230815 rubisco Carbon cycling Carbon fixation Nitrobacter winogradskyi superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter; 6.83102786 7.47544063 22711871 fnr Stress Oxygen stress Pseudomonas putida 7.72123869 8.21583866 8.100580391 7.833278227 7.879685529 189198812 glnA Stress Nitrogen limitation Pyrenophora tritici-repentis Pt-1C-BFP 7.339857484 6.711111789 7.743460435 7.307132569 7.155450901 7.182752254 86569374 sigma_24 Stress Sigma factors Frankia sp. CcI3 6.914375357 6.998111167 7.514417044 15672624 clpC Stress Protein stress Lactococcus lactis subsp. lactis Il1403 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Lactococcus;species:Lactococcus lactis; 6.855572592 7.503819076 119226130 gyrB other category gyrB Gordonia amarae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 7.553818938 7.050550004 113886794 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Shewanella sp. MR-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 7.25587481 6.598576693 7.41330713 7.597244955 7.372840733 196199274 Tet Antibiotic resistance other Clostridium thermocellum DSM 4150 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 7.31170914 7.055237041 117920806 nrfA Nitrogen Dissimilatory N reduction Shewanella sp. ANA-3 6.725369055 7.614149621 27467253 arsB Metal Resistance Arsenic Staphylococcus epidermidis ATCC 12228 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus epidermidis; 7.510796761 7.089691352 7.652764398 7.270342798 7.279988633 7.438015986 77979334 Arylest Organic Remediation Aromatics Other aromatics Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 7.293225715 7.092324461 7.575709573 7.571571356 7.3449599 7.204217652 160899248 pmdAB Organic Remediation Aromatics Others Delftia acidovorans SPH-1 7.068537918 7.749557173 6561503 AprA Sulphur adenylylsulfate reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.043752659 7.418907962 7.879731684 7.496066527 7.375551922 283133968 obgE Stress Radiation stress Rothia mucilaginosa DY-18 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Rothia;species:Rothia mucilaginosa; 6.962913948 7.251368916 7.128722255 7.019077704 7.540704235 495646 CadA Metal Resistance Cadmium Listeria monocytogenes 7.460502589 7.910419739 7.613551892 7.546678701 7.624847221 86136590 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 6.926408892 7.441414745 7.490167851 7.310877662 262202670 AceB Carbon cycling Carbon degradation others Gordonia bronchialis DSM 43247 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 7.231492133 7.01820771 117648072 pimF Organic Remediation Aromatics Aromatic carboxylic acid Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 7.260454872 7.610100012 7.759625578 7.773536774 7.538502766 146312957 hly virulence hemolysin Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 7.318928748 7.68248018 7.008107817 7.429059119 261356957 pectinase Carbon cycling Carbon degradation Pectin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Phyllachorales;genus:Verticillium;species:Verticillium albo-atrum; 7.843852069 8.345508335 8.142623039 8.26363262 7.942494488 115377286 oxyR Stress Oxygen stress Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 6.891820679 7.50533042 7.649674293 7.340539903 7.257617181 7.495542894 39574774 hly virulence hemolysin Bdellovibrio bacteriovorus HD100 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 6.934579154 7.714004087 170722362 cytochrome Energy process Energy process Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 6.876918862 7.327193619 7.415485472 7.100216952 7.085710619 158447999 grpE Stress Heat shock Coprococcus eutactus ATCC 27759 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Coprococcus;species:Coprococcus eutactus; 7.524720139 7.601427542 119537029 nahA Organic Remediation Aromatics Polycyclic aromatics Nocardioides sp. JS614 7.586881883 6.924956235 268161264 amyA Carbon cycling Carbon degradation Starch Photobacterium damselae subsp. damselae CIP 102761 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium damselae; 8.320022127 7.504557784 7.886620941 7.580797904 7.651514672 7.923190461 145213618 pcaG Organic Remediation Aromatics Other aromatics Mycobacterium gilvum PYR-GCK 7.208150985 7.785868253 77458549 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens PfO-1 6.872092152 6.629623393 108761019 dnaK Stress Heat shock Myxococcus xanthus DK 1622 7.07016161 7.512909405 227094634 obgE Stress Radiation stress Lactobacillus gasseri JV-V03 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus gasseri; 6.69066811 7.418442659 212678869 ArsC Metal Resistance Arsenic Providencia rustigianii DSM 4541 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 6.90122735 7.50944408 244538474 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.595851726 7.031897695 6.975762749 7.303946525 115401020 katE Stress Oxygen stress Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.968895106 7.472061689 7.957077549 7.27036766 7.440014702 157011590 AprA Sulphur adenylylsulfate reductase uncultured bacterium superkingdom:Bacteria; 7.339224155 7.920130199 7.499025956 7.342175072 7.739373063 171741029 ara Carbon cycling Carbon degradation Hemicellulose Bifidobacterium dentium ATCC 27678 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium dentium; 7.513797108 7.254648582 46917294 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.687805937 7.718571457 7.327047381 7.853385779 91683990 fnr Stress Oxygen stress Rhodopseudomonas palustris BisB5 7.04443818 6.997189311 7.442169759 7.205772109 6.957959522 89145070 ppk Phosphorus Phosphorus utilization Microbacterium dextranolyticum superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium; 6.844144155 7.571400219 7.418954057 7.613401194 7.364272165 192359349 amyA Carbon cycling Carbon degradation Starch Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 6.793331267 6.876789224 7.089431622 7.113601853 7.040644158 149794213 pstB Stress Phosphate limitation Thermosipho melanesiensis BI429 6.51297709 7.277941564 255991155 obgE Stress Radiation stress Clostridium thermocellum DSM 2360 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 7.419026896 7.169158112 7.82394048 7.369687412 119768428 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 7.147969756 7.260761484 256745745 endochitinase Carbon cycling Carbon degradation Chitin Clostridium papyrosolvens DSM 2782 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium papyrosolvens; 7.103968789 6.992337745 7.787842511 7.322957642 6.972101997 269960386 sigma_38 Stress Sigma factors Vibrio harveyi 1DA3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 7.042282915 7.41534683 260535527 clpC Stress Protein stress Prevotella veroralis F0319 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella veroralis; 6.925307508 7.360071905 213536713 exoglucanase Carbon cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 6.8919216 7.219510764 7.711579518 7.369148689 7.467794736 15838131 ahpC Stress Oxygen stress Xylella fastidiosa 9a5c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xylella;species:Xylella fastidiosa; 6.99495872 7.5661131 196482340 tfdA Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 7.185604905 7.538498751 7.723994448 7.827432818 7.349090452 7.51630209 145555890 glnA Stress Nitrogen limitation Rhodobacter sphaeroides ATCC 17025 7.746428513 7.590971952 8.094688823 7.285785 7.552791638 7.858725837 88858919 pilin virulence pilin Pseudoalteromonas tunicata D2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas tunicata; 7.013362887 7.380674732 7.246998811 7.019027931 7.030939543 159172807 sigma_32 Stress Sigma factors Vibrio sp. AND4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.030581439 7.665504522 6.992051339 6.892251305 86169561 gyrB other category gyrB Leuconostoc citreum superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc; 7.473871369 7.446631641 7.642409951 118043304 linB Organic Remediation Pesticides related compound Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.356109629 6.747421866 7.157533258 7.522300974 170722290 vanA Carbon cycling Carbon degradation Others Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.694448468 7.298046003 7.662873841 7.987298575 7.527911016 139002709 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.341497825 7.383216716 74484303 cymC Organic Remediation Aromatics Other aromatics Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.121689877 6.789086124 7.539958585 258512828 nplT Carbon cycling Carbon degradation Starch Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 7.078860082 7.578904685 7.398530999 7.460427286 213950889 pstS Stress Phosphate limitation Corynebacterium amycolatum SK46 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium amycolatum; 7.17277651 7.146140462 126590926 pstB Stress Phosphate limitation Bacillus sp. B14905 7.326983616 7.474147409 7.853137517 7.208289522 7.422028259 46447700 ChrA Metal Resistance Chromium Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 7.219133706 7.963141745 6.959904659 7.469215649 219869010 sigma_32 Stress Sigma factors Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 6.85362665 7.516783564 6.770423131 7.064982228 7.1566596 163795526 glnA Stress Nitrogen limitation alpha proteobacterium BAL199 7.377660395 7.748481858 6.975721818 7.000673054 157363259 obgE Stress Radiation stress Thermotoga lettingae TMO superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga;species:Thermotoga lettingae; 7.214373242 7.172927989 7.772584871 7.330902048 7.339808717 7.662254216 16082504 ferredoxin_oxidoreductase Bioleaching Electron transport Thermoplasma acidophilum;Thermoplasma acidophilum DSM 1728 6.995855129 6.583576142 225198513 glnA Stress Nitrogen limitation Desulfonatronospira thiodismutans ASO3-1 7.346186202 7.790223427 7.745966517 7.753689569 7.710970767 163811755 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.169728075 7.505070577 88778967 amyA Carbon cycling Carbon degradation Starch Reinekea sp. MED297 7.088667402 7.368425023 7.364211179 6.878509679 7.098591256 6.752990859 213965436 ppx Phosphorus Phosphorus utilization Corynebacterium amycolatum SK46 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium amycolatum; 7.256900786 6.871013851 7.010679959 7.084527951 157804860 APS_AprB Sulphur adenylylsulfate reductase Thiobacillus denitrificans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 7.250068745 7.079754954 7.705627681 94471275 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.444716463 7.279091038 71843121 scaffold Bacteria phage STRUCTURAL Enterobacteria phage NC13 family:Microviridae;genus:Microvirus;species:Enterobacteria phage G4 sensu lato; 6.985408713 7.278250788 91186097 obgE Stress Radiation stress Psychroflexus torquis ATCC 700755 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Psychroflexus;species:Psychroflexus torquis; 7.157716139 7.081309404 7.606916526 209502163 linB Organic Remediation Pesticides related compound Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.032799359 7.154722865 7.430205357 83848952 AceA Carbon cycling Carbon degradation others Croceibacter atlanticus HTCC2559 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Croceibacter;species:Croceibacter atlanticus; 6.876844362 7.032325168 7.489811076 6.946536243 7.114741764 154154782 iro virulence Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 7.61465431 7.607593741 57641731 glnA Stress Nitrogen limitation Thermococcus kodakarensis KOD1 6.917271057 8.013293639 222147954 hly virulence hemolysin Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 7.323676499 6.756961003 7.195254671 7.103067635 7.501144984 29341013 amyA Carbon cycling Carbon degradation Starch Bacteroides thetaiotaomicron VPI-5482 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides thetaiotaomicron; 7.461696519 7.136804468 148256011 ArsC Metal Resistance Arsenic Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.576625725 7.05402021 7.806819414 6.927701066 7.492276548 86280115 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.071431887 7.559252784 7.863013045 7.823182139 7.499893286 27378063 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.375841137 7.817908012 7.729694348 7.561689085 7.501021365 7.662960256 124514342 Fe_S_oxidoreductase Bioleaching Electron transport Leptospirillum sp. Group II UBA 6.974897749 7.550999177 7.135201554 7.474576149 24372200 cytochrome Energy process Energy process Shewanella oneidensis MR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella oneidensis; 6.909848812 6.918790816 256759939 fnr Stress Oxygen stress Thiomonas intermedia K12 7.316723389 7.428205039 114308955 katE Stress Oxygen stress Nitrosomonas eutropha C91 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas eutropha; 7.063714229 7.029682354 157404329 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.018965431 7.301450243 281405173 sigma_70 Stress Sigma factors Prevotella copri DSM 18205 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella copri; 7.33464414 6.747109306 7.848139998 259484427 endochitinase Carbon cycling Carbon degradation Chitin Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.250658586 7.391647967 7.757109075 78046922 pimF Organic Remediation Aromatics Aromatic carboxylic acid Xanthomonas campestris pv. vesicatoria str. 85-10 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas euvesicatoria; 7.086992935 7.8518361 7.615808127 7.607731675 7.235365136 225868727 srt virulence surface protein Streptococcus equi subsp. zooepidemicus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus equi; 7.447478262 7.881617803 94314476 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 7.217783446 7.755970483 7.722695817 7.477288836 91779066 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 6.720982437 7.220006506 120323921 pimF Organic Remediation Aromatics Aromatic carboxylic acid Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 7.058630873 7.407982602 76260677 amyA Carbon cycling Carbon degradation Starch Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 7.067424873 7.921482817 7.323853969 7.813531943 7.796374811 170754967 katE Stress Oxygen stress Clostridium botulinum B1 str. Okra superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium botulinum; 6.739548907 7.727864727 212535892 BpH Organic Remediation Aromatics Aromatic carboxylic acid Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.23923731 7.296597522 122090525 arsB Metal Resistance Arsenic Yersinia enterocolitica subsp. enterocolitica 8081 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 7.396676771 7.789935465 7.854669329 118759284 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 7.422794766 7.188927366 7.815206062 7.261231097 7.306705336 256421216 amyA Carbon cycling Carbon degradation Starch Chitinophaga pinensis DSM 2588 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 6.86567635 7.346794002 7.460730633 7.175145063 7.42870602 218681508 grpE Stress Heat shock Rhizobium etli CIAT 894 6.589988737 7.582798167 7.101650922 7.10054755 157323217 glnA Stress Nitrogen limitation Serratia proteamaculans 568 7.446658633 7.431583596 7.241023236 7.108589567 261282372 fnr Stress Oxygen stress Geobacillus sp. Y412MC10 7.594480251 7.748202144 163841900 pstA Stress Phosphate limitation Renibacterium salmoninarum ATCC 33209 7.119690039 6.806297836 7.776410905 6.963198724 6.911024656 119026577 amyA Carbon cycling Carbon degradation Starch Bifidobacterium adolescentis ATCC 15703 7.554363078 7.987185177 56798863 catechol_B Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 7.204468331 6.683963738 221535192 phoB Stress Phosphate limitation Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 7.478428936 7.818434377 7.322682283 7.611663534 7.520437795 154701389 ara_fungi Carbon cycling Carbon degradation Hemicellulose Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 6.513089758 7.2772574 122088458 napA Nitrogen Dissimilatory N reduction Yersinia enterocolitica subsp. enterocolitica 8081 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 6.857879137 7.51248667 6.958657192 7.054105113 195975077 nplT Carbon cycling Carbon degradation Starch Streptococcus equi subsp. zooepidemicus MGCS10565 7.149182693 7.541318002 48152 mercury_resistant_gene Bioleaching Metal Resistance Acidithiobacillus ferrooxidans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus; 7.05932461 7.010651427 7.436280361 7.185022791 7.223250929 2547081 pstB Stress Phosphate limitation Enterobacter cloacae 6.967577786 7.34842608 7.103232365 7.548777242 242122281 hydrogenase Energy process Energy process Desulfovibrio salexigens DSM 2638 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio salexigens; 7.191061998 7.552230424 7.048388069 7.341093593 256742990 fnr Stress Oxygen stress Thiomonas intermedia K12 7.122542627 7.574696235 114321809 sigma_32 Stress Sigma factors Alkalilimnicola ehrlichii MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 8.156871954 7.347205915 7.53963346 7.673856492 8.007185241 146301671 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 7.019338493 7.422016378 77978717 amyA Carbon cycling Carbon degradation Starch Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 6.889852758 7.423448286 1017439 bphC Organic Remediation Aromatics Polycyclic aromatics Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.331125778 7.308190019 119401426 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7.128445161 7.081240621 154484967 bglP Stress Glucose limitation Eubacterium ventriosum ATCC 27560 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium ventriosum; 6.966667206 6.72210016 7.534744838 152067232 cspA Stress Cold shock Beggiatoa sp. PS superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Beggiatoa; 7.582075536 7.51452218 156744288 AceA Carbon cycling Carbon degradation others Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 7.910205985 7.065090193 8.021854776 7.409887736 7.461220856 7.809886792 15606649 sigma_70 Stress Sigma factors Aquifex aeolicus VF5 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Aquifex;species:Aquifex aeolicus; 7.017244429 7.264917444 154488290 amyA Carbon cycling Carbon degradation Starch Bifidobacterium adolescentis L2-32 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium adolescentis; 7.160072986 7.059920851 161331561 sigma_32 Stress Sigma factors Shewanella benthica KT99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella benthica; 6.819797185 7.343818434 134094339 pstC Stress Phosphate limitation Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 7.390483229 7.409846036 189495619 pstA Stress Phosphate limitation Chlorobium phaeobacteroides BS1 7.182653409 7.301577482 111022498 nmoA Organic Remediation Aromatics Nitoaromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7.850255711 7.371098717 7.816400465 7.571413733 8.175723254 258587564 nrfA Nitrogen Dissimilatory N reduction Vibrio mimicus VM573 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 7.530034032 7.387087306 7.36907351 7.66872322 7.975773402 262374891 phoB Stress Phosphate limitation Acinetobacter lwoffii SH145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter lwoffii; 7.432517672 7.568981365 38004625 nagG Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.177845749 8.174871978 7.533228738 7.727517267 7.700525821 14273660 gyrB other category gyrB Mycobacterium asiaticum superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.214745338 7.609152247 7.42252783 7.364422776 77378515 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.45945765 7.582982996 7.597703517 7.480073751 52787736 opuE Stress Osmotic stress Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 7.421001791 6.724089611 50122768 xylanase Carbon cycling Carbon degradation Hemicellulose Erwinia carotovora subsp. atroseptica SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 7.140427157 6.878817721 6.836658646 6.897750724 262395661 proV Stress Osmotic stress Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 6.43082373 7.033791753 142852331 ahpF Stress Oxygen stress Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 7.086005475 7.456183886 160346852 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 7.406036855 7.519827236 7.379641588 113947415 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Shewanella baltica OS195 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 7.076467529 8.004651285 119475209 pimF Organic Remediation Aromatics Aromatic carboxylic acid marine gamma proteobacterium HTCC2143 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 6.574092966 7.499416903 33603659 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Bordetella bronchiseptica RB50 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella bronchiseptica; 6.875798463 7.664999741 7.258542085 7.652633689 57233578 clpC Stress Protein stress Dehalococcoides ethenogenes 195 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides;species:Dehalococcoides ethenogenes; 7.186657726 7.691906977 7.413285579 7.722081319 146146876 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.052097334 7.282462135 188535571 pstA Stress Phosphate limitation Erwinia tasmaniensis Et1/99 6.601071462 7.476066656 19911569 rubisco Carbon cycling Carbon fixation Methylococcus capsulatus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus; 7.630397323 7.684935036 7.61714189 159893261 cda Carbon cycling Carbon degradation Starch Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 8.20207017 7.935215073 7.624666288 7.645366222 56962764 ChrA Metal Resistance Chromium Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 6.929509692 7.000358689 109455986 pstC Stress Phosphate limitation Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 7.345760876 7.644077282 83576301 silC Metal Resistance Silver Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 7.394181989 7.392103534 151282966 SMR_antibiotics Antibiotic resistance transporter Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 7.146140462 7.494122688 59718277 sigma_70 Stress Sigma factors Neisseria gonorrhoeae FA 1090 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria gonorrhoeae; 6.84613432 6.91747611 7.017713031 7.383702189 255261194 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Thalassobium; 6.975676939 7.095238343 7.458596871 7.135467408 213925227 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 7.097487431 7.474811219 167967231 pcc Carbon cycling Carbon fixation Mycobacterium tuberculosis H37Ra superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 6.989111904 7.345665839 7.610854154 7.139799715 7.234997569 903305 pstA Stress Phosphate limitation Bacillus subtilis 7.542045109 7.613009655 7.713747985 7.882645081 8.125765091 13173341 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 6.722342978 7.661273473 209964379 MATE_antibiotic Antibiotic resistance transporter Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 7.892836021 7.502984093 160355816 nrfA Nitrogen Dissimilatory N reduction Bacillus selenitireducens MLS10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus selenitireducens; 6.819435375 7.082090196 238701212 AceB Carbon cycling Carbon degradation others Yersinia aldovae ATCC 35236 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia aldovae; 7.262426878 7.184865447 149912808 gyrB other category gyrB Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.089644276 7.48296248 167729829 cap virulence capsule Candidatus Cloacamonas acidaminovorans superkingdom:Bacteria;genus:Candidatus Cloacamonas; 7.085625661 7.541362888 7.097873908 7.189615453 170728150 pilin virulence pilin Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 8.335110521 8.18933244 8.377688955 8.516042244 194100433 primase Bacteria phage REPLICATION Klebsiella phage K11 7.27283644 7.589879436 7.668117781 7.744662388 8.011813351 218751014 CODH Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.019272155 7.09704272 7.401135593 156111124 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 6.527352963 7.588182999 78224365 cytochrome Energy process Energy process Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 7.282785174 7.260278144 7.631692116 7.424420447 91781944 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 6.993389889 7.853877951 6.943873664 7.238665477 186685915 tfdA Organic Remediation Aromatics Chlorinated aromatics Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 6.860466937 7.156647099 50084817 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 7.368604861 7.125452066 7.485959895 7.135228142 7.725813355 10173485 ChrA Metal Resistance Chromium Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 6.878556716 7.669339463 7.086074484 6.94981559 157679399 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.224777815 7.574224819 7.238355985 7.050724093 7.390596583 91975820 fnr Stress Oxygen stress Rhodopseudomonas palustris BisB5 7.037973924 7.579992745 7.414205052 7.408747715 7.63011378 121605627 proO Organic Remediation Aromatics Other aromatics Polaromonas naphthalenivorans CJ2 6.841755239 7.591075009 116491847 cadBD Metal Resistance Cadmium Pediococcus pentosaceus ATCC 25745 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Pediococcus;species:Pediococcus pentosaceus; 6.890480078 7.129228415 7.450338023 6.859456915 7.483845362 146340739 NiR Nitrogen Assimilatory N reduction Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.114057609 7.090458832 133912317 alkK Organic Remediation Others Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 7.322203853 7.816835908 7.879062811 7.931178122 7.780450312 7.900438334 66267662 oxdB Organic Remediation Aromatics Nitoaromatics Pseudomonas sp. K-9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.298133455 8.071831564 7.750588172 7.394898853 93356798 PobA Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 7.320216529 7.269427479 7.67231158 198038142 ArsC Metal Resistance Arsenic Burkholderia cenocepacia J2315 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 7.879753644 7.568826274 170695678 proV Stress Osmotic stress Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 7.500963353 7.407945111 116608709 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.312838595 7.209906436 169239617 clpC Stress Protein stress Mycobacterium abscessus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.411901194 7.905355274 7.027975364 7.195101821 7.523956341 38570178 mcrA Carbon cycling Methane Methane production uncultured euryarchaeote superkingdom:Archaea;phylum:Euryarchaeota; 7.595039045 6.636641807 7.469002869 7.526070044 7.611064426 154159343 phn Organic Remediation Herbicides related compound Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 7.492456215 8.09815266 8.131458646 7.923433889 154240614 mcrA Carbon cycling Methane Methane production uncultured Methanobacteriales archaeon superkingdom:Archaea;phylum:Euryarchaeota;class:Methanobacteria;order:Methanobacteriales; 7.201766396 7.633944013 7.681849292 7.507734346 7.613456134 7.676814273 219538381 SMR_antibiotics Antibiotic resistance transporter Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 6.909537191 6.823885432 152981928 ChrA Metal Resistance Chromium Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 7.173142033 7.284268969 260550924 sigma_32 Stress Sigma factors Acinetobacter sp. RUH2624 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter genomosp. 13TU; 7.016467782 6.948892358 86572264 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.154962328 7.440739803 7.756978983 7.224905218 7.475996042 4545295 ureC Nitrogen Ammonification Lactobacillus fermentum superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus; 7.603365935 7.815042246 7.035259605 7.135812912 157285722 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.985863806 8.358274208 8.315434475 8.35237762 8.267978963 91777005 pimF Organic Remediation Aromatics Aromatic carboxylic acid Methylobacillus flagellatus KT superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 7.657164119 7.752620873 7.934674325 6.884184309 49529954 trzN Organic Remediation Herbicides related compound Acinetobacter sp. ADP1 7.3027532 7.475163276 7.455549633 7.447124853 7.568521122 124522149 nagI Organic Remediation Aromatics Aromatic carboxylic acid Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 7.433635008 7.880221433 7.625904598 7.887627426 214038530 sigma_24 Stress Sigma factors marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.23877905 7.560133955 7.384975894 7.127362625 106882179 CopA Metal Resistance Copper Psychromonas ingrahamii 37 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas;species:Psychromonas ingrahamii; 7.401507773 7.398944319 126224977 atzA Organic Remediation Herbicides related compound Burkholderia pseudomallei 668 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 7.616539286 7.404691246 7.50202269 7.404971893 149934038 pcc Carbon cycling Carbon fixation Bacteroides vulgatus ATCC 8482 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides vulgatus; 7.141118183 7.524864358 7.069376143 7.16146905 255693910 pstS Stress Phosphate limitation Bacteroides finegoldii DSM 17565 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides finegoldii; 7.294496323 7.38771657 83951719 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 7.01613311 6.954941752 7.858146877 7.167111561 6.911390565 239934592 sigma_70 Stress Sigma factors uncultured Acidobacteria bacterium superkingdom:Bacteria;phylum:Acidobacteria; 7.188995004 7.615909076 262293424 rubisco Carbon cycling Carbon fixation Acidithiomicrobium sp. P2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Acidimicrobiales;family:Acidimicrobiaceae;genus:Acidithiomicrobium; 6.569556597 7.248981587 145230463 chnB Organic Remediation Other Hydrocarbons Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 6.713740387 7.319414435 226830842 amyA Carbon cycling Carbon degradation Starch Actinomyces coleocanis DSM 15436 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces coleocanis; 7.054275271 6.929263541 7.139789233 7.524113588 7.329948718 225874593 ahpC Stress Oxygen stress Acidobacterium capsulatum ATCC 51196 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteria;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 6.879527416 6.802319022 153809716 tutFDG Organic Remediation Aromatics BTEX and related aromatics Ruminococcus obeum ATCC 29174 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus obeum; 6.708306898 7.322261156 7649286 PobA Organic Remediation Aromatics Aromatic carboxylic acid Sagittula stellata 7.01973249 7.751163954 6.677337066 6.979316474 84778389 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6.962929279 7.510392878 7.530573457 7.327453539 116619429 ArsC Metal Resistance Arsenic Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 7.419156891 7.120227177 7.781021251 113970472 cda Carbon cycling Carbon degradation Starch Shewanella sp. MR-4 7.305489628 7.284788514 7.561813449 7.772212862 149144586 nifH Nitrogen Nitrogen fixation Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.655185936 7.485109223 57224535 glnA Stress Nitrogen limitation Dehalococcoides ethenogenes 195 7.070530035 6.823314971 7.390396064 18495819 ChnA Organic Remediation Other Hydrocarbons Xanthobacter flavus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter; 6.813823965 7.392626557 7.363597782 7.312474924 18313427 glnA Stress Nitrogen limitation Pyrobaculum aerophilum str. IM2 6.976520314 7.026123151 7.062878 7.259411341 157837417 pcaG Organic Remediation Aromatics Other aromatics Chromohalobacter sp. HS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter; 7.39972878 7.561626137 7.792274832 7.383007415 7.612054221 7.699328038 167574336 pstC Stress Phosphate limitation Burkholderia oklahomensis C6786 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia oklahomensis; 6.998252584 7.445543491 7.720700231 7.468893599 7.646468807 229492146 katE Stress Oxygen stress Rhodococcus erythropolis SK121 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 7.411022597 6.907026658 166860499 SmtA Metal Resistance Miscellaneous Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 6.757847088 7.10528773 19421899 PceA Organic Remediation Others Desulfitobacterium hafniense superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 7.155284704 7.257662248 108466632 katE Stress Oxygen stress Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 7.881382931 8.160959967 8.236539101 7.983279682 8.099755858 252126470 sigma_70 Stress Sigma factors Corynebacterium matruchotii ATCC 14266 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium matruchotii; 7.844065741 7.80984678 56809865 phenol_oxidase Carbon cycling Carbon degradation Lignin Trametes sp. AH28-2 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 7.189734586 6.871574507 7.572601427 6.871566391 7.62897579 157404578 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 6.824434045 7.291042442 7.510137761 7.018878597 85667486 xylanase Carbon cycling Carbon degradation Hemicellulose Bifidobacterium adolescentis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium; 7.131456262 7.822492161 71906090 SMR_antibiotics Antibiotic resistance transporter Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 6.757505007 7.411860298 272537198 iro virulence Burkholderia sp. CCGE1002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.344227482 7.389298283 7.396770037 146307291 cytochrome Energy process Energy process Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 8.139025959 8.795000481 212546887 BpH Organic Remediation Aromatics Aromatic carboxylic acid Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.103909422 7.619537474 55232184 nirK Nitrogen Denitrification Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 7.389238254 7.670215462 7.703392117 7.574622964 7.368979539 187736323 sigma_24 Stress Sigma factors Akkermansia muciniphila ATCC BAA-835 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Akkermansia;species:Akkermansia muciniphila; 7.920049896 7.779459946 7.850917355 7.718393052 121555430 pimF Organic Remediation Aromatics Aromatic carboxylic acid Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 7.005772364 7.202922542 7.553726468 156042750 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 6.967671345 6.930707561 6.874563855 7.254719365 251771947 pstB Stress Phosphate limitation Leptospirillum ferrodiazotrophum 7.47965147 7.397411299 206895369 sigma_70 Stress Sigma factors Coprothermobacter proteolyticus DSM 5265 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermodesulfobiaceae;genus:Coprothermobacter;species:Coprothermobacter proteolyticus; 7.131557342 7.202982599 7.156336411 7.827752597 148261809 cytochrome_c Bioleaching Electron transport Acidiphilium cryptum JF-5 7.070884622 7.394843381 7.29146718 7.568935415 134268422 ChrA Metal Resistance Chromium Geobacillus thermodenitrificans NG80-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermodenitrificans; 7.303014039 7.365571374 159896927 sigma_24 Stress Sigma factors Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 7.19917186 7.526572736 7.76842086 7.532607738 7.456130031 228698300 iro virulence Bacillus cereus Rock3-44 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 6.729835716 6.844195888 7.42426559 147886054 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 7.133872247 7.463633434 7.44500544 7.449386618 7.374913846 48810 B_lactamase Antibiotic resistance Beta-lactamases Pseudomonas aeruginosa superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.752182043 7.243711549 7.442110852 91720051 nagI Organic Remediation Aromatics Aromatic carboxylic acid Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 7.304756834 7.804044512 7.337397055 7.121422618 7.40921433 117562695 tutFDG Organic Remediation Aromatics BTEX and related aromatics Aeromonas hydrophila subsp. hydrophila ATCC 7966 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas hydrophila; 7.543943678 7.649025895 95133747 sigma_38 Stress Sigma factors Desulfuromonas acetoxidans DSM 684 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Desulfuromonadaceae;genus:Desulfuromonas;species:Desulfuromonas acetoxidans; 7.210330938 7.253677907 7.427556436 7.576813734 13604223 groEL Stress Heat shock Flavobacterium ferrugineum 7.615138055 7.229140087 16081724 gdh Nitrogen Ammonification Thermoplasma acidophilum DSM 1728 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermoplasmata;order:Thermoplasmatales;family:Thermoplasmataceae;genus:Thermoplasma;species:Thermoplasma acidophilum; 6.866884583 6.727631569 7.51208683 7.248304892 6.853413318 83944870 pimF Organic Remediation Aromatics Aromatic carboxylic acid Oceanicaulis alexandrii HTCC2633 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis;species:Oceanicaulis alexandrii; 7.557489755 7.273058314 7.210245976 7.431496968 7.291722474 116492703 FTHFS Carbon cycling Acetogenesis Pediococcus pentosaceus ATCC 25745 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Pediococcus;species:Pediococcus pentosaceus; 6.660402498 7.532745673 119462397 sigma_70 Stress Sigma factors Nodularia spumigena CCY9414 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nodularia;species:Nodularia spumigena; 7.182047667 7.183565835 7.657778991 84787832 linC Organic Remediation Pesticides related compound Erythrobacter litoralis HTCC2594 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 7.052715965 7.150191163 90413684 atzB Organic Remediation Herbicides related compound Photobacterium profundum 3TCK superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 7.230779737 7.27694216 7.505973826 7.62533442 7.456748665 148830958 pcc Carbon cycling Carbon fixation Erythrobacter sp. SD-21 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 7.361206787 7.565892385 7.773722228 7.365014585 7.629877623 119473855 nagG Organic Remediation Aromatics Aromatic carboxylic acid Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 7.223950623 7.68543403 7.011273001 7.337480384 114764281 ppx Phosphorus Phosphorus utilization Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.722526956 7.119457114 7.822678845 7.12288794 7.482838411 8.132601459 35211987 linB Organic Remediation Pesticides related compound Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 7.161676225 7.386686695 157324297 sigma_70 Stress Sigma factors Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 7.270939558 7.58334041 223481942 ArsC Metal Resistance Arsenic Alcanivorax sp. DG881 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 6.624731377 7.560337771 7.24967701 6.955071846 7.285899867 85836536 pstB Stress Phosphate limitation Vibrio sp. MED222 6.820070859 7.212604823 87134563 pimF Organic Remediation Aromatics Aromatic carboxylic acid Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 7.351577426 7.25431309 31322348 dsrA Sulphur sulfite reductase Desulfatibacillum aliphaticivorans superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum; 6.806508463 7.297619937 6.82321347 7.060818707 77163566 gyrB other category gyrB Nitrosococcus oceani ATCC 19707 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 6.986374179 7.310483894 145247082 pheA Organic Remediation Aromatics Other aromatics Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 6.925584936 7.017151817 110598605 obgE Stress Radiation stress Chlorobium ferrooxidans DSM 13031 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium ferrooxidans; 6.955640494 7.580182218 7.685560193 7.541172092 190574377 CopA Metal Resistance Copper Stenotrophomonas maltophilia K279a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 7.265355817 7.123065696 7.426091307 57242542 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Campylobacter upsaliensis RM3195 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter upsaliensis; 7.435250922 7.098183786 7.982266858 7.168140642 7.005396897 7.255461427 54610237 fnr Stress Oxygen stress Thiocapsa roseopersicina 6.79670748 7.345587732 261840472 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 6.673523268 7.477381296 187919792 nhh Organic Remediation Aromatics Nitoaromatics Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 6.918940154 7.571607936 7.365551962 7.071521118 7.692876001 260219606 glnA Stress Nitrogen limitation Curvibacter putative symbiont of Hydra magnipapillata 7.270206441 6.898520988 7.077191127 6.867261697 45185359 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Eremothecium gossypii superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Eremothecium; 7.306684137 6.765694244 7.910569821 117986956 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7.228601041 7.136512415 220713524 ahpC Stress Oxygen stress Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 6.809292587 6.48990345 7.502020068 6.797224583 6.928192841 154175431 dnaK Stress Heat shock Campylobacter curvus 525.92 7.157125174 7.156624411 258638140 obgE Stress Radiation stress Pantoea sp. At-9b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 7.960109255 7.314016709 7.777852846 7.73046981 145408836 CadA Metal Resistance Cadmium Caldicellulosiruptor saccharolyticus DSM 8903 7.470357394 7.928650078 7.770077087 8.078264478 84514490 pstB Stress Phosphate limitation Loktanella vestfoldensis SKA53 7.435094267 7.446097237 7.38015146 7.58417235 7.153661694 119445231 pimF Organic Remediation Aromatics Aromatic carboxylic acid Alteromonadales bacterium TW-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales; 6.468628146 7.416775476 242802115 phenol_oxidase Carbon cycling Carbon degradation Lignin Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 7.621638378 6.958452799 8.058225151 154277270 GroES Stress Heat shock Ajellomyces capsulatus NAm1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 7.097086659 7.165845127 7.833580532 167771664 TerD Metal Resistance Tellurium Anaerotruncus colihominis DSM 17241 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Anaerotruncus;species:Anaerotruncus colihominis; 6.732647044 6.664839989 7.433070832 6.934962426 7.454358326 16082507 Fe_S_oxidoreductase Bioleaching Electron transport Thermoplasma acidophilum DSM 1728;Thermoplasma acidophilum 7.223008835 7.660444694 7.268043538 7.291812005 229074783 Tet Antibiotic resistance other Bacillus cereus Rock4-18 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 7.037072162 7.450811106 13813510 glnA Stress Nitrogen limitation Sulfolobus solfataricus P2 6.540551507 7.121603531 164601665 oxyR Stress Oxygen stress Coxiella burnetii 'MSU Goat Q177' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Coxiellaceae;genus:Coxiella;species:Coxiella burnetii; 7.018144204 7.512172804 89362167 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 7.647298447 7.594023013 7.635319033 7.885068178 7.528121628 197696407 AceB Carbon cycling Carbon degradation others Streptomyces sp. SPB74 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7.418604374 8.017664119 7.761435301 7.712096958 7.900970787 7.433070501 158137909 silC Metal Resistance Silver Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.022659101 7.17338584 7.476634057 7.219355804 118424329 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.157997157 7.158044444 186468845 sigma_70 Stress Sigma factors Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 6.509102149 7.416137003 222440162 gyrB other category gyrB Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 6.884317052 7.579292357 7.080705011 6.817880674 86169565 gyrB other category gyrB Leuconostoc pseudomesenteroides superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc; 7.048125681 7.345212715 7.608588531 7.21252375 7.309389543 4335906 fimbriae virulence fimbriae Escherichia coli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 6.977490184 7.243719501 28805555 ppx Phosphorus Phosphorus utilization Vibrio parahaemolyticus RIMD 2210633 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.351508656 7.209201344 256817958 katE Stress Oxygen stress Streptomyces griseoflavus Tu4000 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoflavus; 7.036056392 7.228512443 227348977 pcc Carbon cycling Carbon fixation Corynebacterium pseudogenitalium ATCC 33035 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium pseudogenitalium; 7.675946528 7.109991464 7.232535135 7.281605338 7.589971774 110346943 CadA Metal Resistance Cadmium Mesorhizobium sp. BNC1 6.864086658 7.228783186 190573743 iro virulence Stenotrophomonas maltophilia K279a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 7.258340361 7.305749212 7.729567154 149359469 Catechol Organic Remediation Aromatics Other aromatics Marinobacter algicola DG893 6.865387664 7.319104476 108803322 pheA Organic Remediation Aromatics Other aromatics Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 6.893076933 7.131546766 7.560236228 7.101228766 7.232878669 7.688882633 238759566 pstB Stress Phosphate limitation Yersinia aldovae ATCC 35236 6.641371643 7.504118218 39651084 nitA Organic Remediation Aromatics Other aromatics Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.655793061 7.375434566 7.368600207 7.565894077 283472679 pilin virulence pilin Xanthomonas albilineans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas; 7.153141038 7.505743105 7.911730877 7.620731879 7.527226513 7.684604195 237800009 type_III_secretion virulence secretion Pseudomonas syringae pv. oryzae str. 1_6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 7.664881275 6.817760041 55376530 ZntA Metal Resistance Zinc Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 7.216740124 7.454397383 46519939 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.062102308 7.092477335 260595810 pstA Stress Phosphate limitation Cronobacter turicensis 7.022633669 7.493280624 39649116 ppx Phosphorus Phosphorus utilization Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.32968184 7.424770457 7.372889611 7.29335676 7.780715286 120603575 dsrA Sulphur sulfite reductase Desulfovibrio vulgaris subsp. vulgaris DP4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 7.172575362 7.170946419 115285885 Arylest Organic Remediation Aromatics Other aromatics Burkholderia cepacia AMMD superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 7.025199796 7.260147719 7.516218461 7.686948262 49648640 glnA Stress Nitrogen limitation Yarrowia lipolytica 8.161705442 7.960362723 7.730178092 7.794039324 7.619505771 261413344 fnr Stress Oxygen stress Aggregatibacter actinomycetemcomitans D11S-1 6.898897601 6.879108349 7.716248688 7.317689326 7.051157989 7.406150849 224945187 fnr Stress Oxygen stress Corynebacterium matruchotii ATCC 33806 7.068763405 7.689945609 7.865630828 7.824926615 7.369729474 7.684235198 218253058 CopA Metal Resistance Copper Mitsuokella multacida DSM 20544 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Mitsuokella;species:Mitsuokella multacida; 7.463200847 7.70632148 7.869386668 7.208748153 7.433675957 196185118 ArsC Metal Resistance Arsenic Brevundimonas sp. BAL3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas; 7.673306582 7.878877741 13815139 terminal_quinol_oxidase Bioleaching Electron transport Sulfolobus solfataricus P2 6.940054691 6.898675166 178467136 CopA Metal Resistance Copper Streptomyces griseus subsp. griseus NBRC 13350 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 7.251049448 7.743265978 254461226 phenol_oxidase Carbon cycling Carbon degradation Lignin Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.079306499 7.373026968 7.066747458 7.042221398 192289978 sox Sulphur Sulphur oxidation Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.190766921 7.161857468 23099575 pimF Organic Remediation Aromatics Aromatic carboxylic acid Oceanobacillus iheyensis HTE831 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Oceanobacillus;species:Oceanobacillus iheyensis; 6.950133181 7.079204552 114191985 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 6.806968052 7.09809037 7.451916904 88643138 dsrA Sulphur sulfite reductase uncultured prokaryote 6.753304594 6.889925966 90195244 chnB Organic Remediation Other Hydrocarbons Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 6.986366708 7.123967922 134266532 adpB Organic Remediation Pesticides related compound Geobacillus thermodenitrificans NG80-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermodenitrificans; 6.876192104 7.515628882 15077474 dsrA Sulphur sulfite reductase Desulfovibrio desulfuricans subsp. desulfuricans superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 6.907134305 7.029958097 85826090 grpE Stress Heat shock Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.128451824 7.518688527 37955518 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 6.858950935 7.351398744 89350175 ZntA Metal Resistance Zinc Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 6.76028584 7.506009044 217978081 Arylest Organic Remediation Aromatics Other aromatics Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 7.323849272 7.221136815 7.444417917 7.000064516 7.758700998 91690547 phdCI Organic Remediation Aromatics Polycyclic aromatics Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.636668146 7.653676158 7.176444275 7.141263149 119855648 TerC Metal Resistance Tellurium Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 6.706514608 7.37021752 34498812 ppk Phosphorus Phosphorus utilization Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 7.795616649 7.387616715 7.658074988 7.675515276 7.79960749 148871001 MFS_antibiotic Antibiotic resistance transporter Vibrio harveyi HY01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 6.856029665 7.196644259 163261779 cumA Organic Remediation Aromatics Other aromatics Bordetella petrii 7.541153914 7.103856382 7.858672482 189498328 endoglucanase Carbon cycling Carbon degradation Cellulose Volvariella volvacea superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pluteaceae;genus:Volvariella; 6.834386271 6.811223817 7.574580649 169007914 xylA Carbon cycling Carbon degradation Hemicellulose Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.952072016 7.542789451 8.060081693 7.605973057 7.803819272 84385766 B_lactamase_A Antibiotic resistance Beta-lactamases Vibrio splendidus 12B01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 6.53662349 7.168614312 116093600 srt virulence surface protein Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus delbrueckii; 7.320153401 7.469407682 28401264 tfdA Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 7.310277289 7.93489308 148261403 glycosyl_transferase_EPS Bioleaching EPS Acidiphilium cryptum JF-5 6.999415057 7.543617104 118590457 gyrB other category gyrB Stappia aggregata IAM 12614 7.524405456 7.531345502 7.459173663 7.439321823 7.569160175 37954342 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.195035037 7.324387125 78195281 TehB Metal Resistance Tellurium Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 7.164656559 7.45254176 4218927 B_lactamase Antibiotic resistance Beta-lactamases Ralstonia pickettii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 6.925189648 7.544544916 21637367 endochitinase Carbon cycling Carbon degradation Chitin Stachybotrys elegans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;genus:Stachybotrys; 6.927751145 6.967765721 7.441425452 170691457 MFS_antibiotic Antibiotic resistance transporter Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 6.763562318 7.416642295 54016746 nitA Organic Remediation Aromatics Other aromatics Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 7.633211659 8.186169294 1353197 ahpF Stress Oxygen stress Eubacterium acidaminophilum superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium; 7.031435723 7.369289953 7.342053609 6.992538821 113936345 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 7.506468879 7.501488298 6.761568076 7.23087515 7.097042295 117610623 nitA Organic Remediation Aromatics Other aromatics Magnetococcus sp. MC-1 superkingdom:Bacteria;phylum:Proteobacteria;genus:Magnetococcus; 7.56595479 7.370570335 219995057 sigma_24 Stress Sigma factors Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 7.363189183 7.460078361 49241537 aclB Carbon cycling Carbon fixation Staphylococcus aureus subsp. aureus MRSA252 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus aureus; 7.284701189 7.279497201 119880019 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Salinispora arenicola CNS205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 7.443376306 7.852745921 7.784097637 7.402118763 7.487026475 195546662 DNA_polymerase_type_I Bacteria phage REPLICATION Pseudomonas phage PT5 order:Caudovirales;family:Podoviridae;genus:phiKMV-like viruses; 7.077534952 7.322056714 7.350101034 7.363054641 91976782 CopA Metal Resistance Copper Rhodopseudomonas palustris BisB5 7.29015941 7.134944494 260840379 iro virulence Vibrio sp. RC341 7.189175865 6.817247931 223585931 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.262911773 7.420029988 66967807 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.435139031 6.697266414 6.989803757 6.937714244 116748023 glnA Stress Nitrogen limitation Syntrophobacter fumaroxidans MPOB 7.005777207 6.941120635 7.647195221 161388124 pimF Organic Remediation Aromatics Aromatic carboxylic acid Phaeobacter gallaeciensis BS107 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 7.356248023 7.316089121 7.895728819 7.401095007 7.316889391 7.236099942 203288031 alkK Organic Remediation Others Borrelia recurrentis A1 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Spirochaetaceae;genus:Borrelia;species:Borrelia recurrentis; 6.950791251 7.292188192 19909625 gyrB other category gyrB Terasakiella pusilla superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Terasakiella; 7.10172491 7.264014118 7.239929895 7.124661295 39996581 MFS_antibiotic Antibiotic resistance transporter Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 6.835331113 7.26148371 7.315250806 7.329053769 7.131454068 256579400 sigma_70 Stress Sigma factors Desulfomicrobium baculatum DSM 4028 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfomicrobiaceae;genus:Desulfomicrobium;species:Desulfomicrobium baculatum; 6.892316054 7.457096481 7.301506799 7.372204901 190996666 cytochrome Energy process Energy process Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 7.396903295 7.489423761 258566401 AceA Carbon cycling Carbon degradation others Uncinocarpus reesii 1704 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 7.723781623 7.169766692 7.513914696 145960916 pstB Stress Phosphate limitation Vibrionales bacterium SWAT-3 6.90134259 7.491392253 241213586 SMR_antibiotics Antibiotic resistance transporter Asticcacaulis excentricus CB 48 7.836558503 7.156127352 7.875652604 255992484 ureC Nitrogen Ammonification Clostridium thermocellum DSM 2360 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 6.988937037 7.834166621 99030615 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 7.046169611 7.493221907 16331492 dnaK Stress Heat shock Synechocystis sp. PCC 6803 6.953667211 6.816850401 7.506735735 85712569 ahpC Stress Oxygen stress Idiomarina baltica OS145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina baltica; 7.46371675 7.681116279 7.461292457 7.56031111 7.416043842 119816573 phdCI Organic Remediation Aromatics Polycyclic aromatics Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.238698314 7.303133595 7.50882996 7.195585279 7.16247 91777620 ophC Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.322831729 7.42829559 212635422 AceB Carbon cycling Carbon degradation others Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 7.070753784 7.13183683 209907025 tutFDG Organic Remediation Aromatics BTEX and related aromatics Enterobacter cancerogenus ATCC 35316 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 7.155787134 7.165249196 7.3940439 7.281760219 7.287182407 77976358 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 7.193548676 7.393584383 38194120 Xamo Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 6.860741516 7.507058526 7.294506651 7.253129463 58002011 katE Stress Oxygen stress Gluconobacter oxydans 621H superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter oxydans; 7.127295842 6.706445591 7.606180878 119116122 bphC Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium superkingdom:Bacteria; 7.140756296 6.921590451 7.114280501 6.92179051 87286002 nasA Nitrogen Assimilatory N reduction Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 7.283782838 7.427118075 71915397 SMR_antibiotics Antibiotic resistance transporter Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 6.981666592 7.483831653 110622508 pstS Stress Phosphate limitation uncultured methanogenic archaeon RC-I superkingdom:Archaea;phylum:Euryarchaeota; 7.313576825 7.265257194 212710987 SMR_antibiotics Antibiotic resistance transporter Providencia alcalifaciens DSM 30120 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 7.110551521 7.34203804 167945383 ppx Phosphorus Phosphorus utilization 7.76112525 7.536786129 7.482351307 7.301135036 170693875 nitA Organic Remediation Aromatics Other aromatics Burkholderia graminis C4D1M 7.263395407 7.562131517 7.167387363 7.2530822 89902628 hly virulence hemolysin Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 7.644215915 7.86790246 8.41437175 7.837296525 7.744146696 117579413 CopA Metal Resistance Copper Gramella forsetii KT0803 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Gramella;species:Gramella forsetii; 7.216906356 7.420550078 220911171 ureC Nitrogen Ammonification Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 7.451126803 7.494153925 7.539540802 7.797820343 7.628984524 221635972 nicdehydr Organic Remediation Aromatics Heterocyclic aromatics Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 7.200136356 7.384411005 218272682 ara Carbon cycling Carbon degradation Hemicellulose Roseburia intestinalis L1-82 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia intestinalis; 7.152779348 6.936720325 194308534 pcc Carbon cycling Carbon fixation Pelodictyon phaeoclathratiforme BU-1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 6.735011204 7.434488797 283566005 hly virulence hemolysin Bacillus cellulosilyticus DSM 2522 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cellulosilyticus; 7.288713408 7.454311795 32895234 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 6.922550401 7.188793345 85110091 nagG Organic Remediation Aromatics Aromatic carboxylic acid Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 7.590987561 7.5397007 119459133 cap virulence capsule marine gamma proteobacterium HTCC2080 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 6.919484788 6.640032423 7.010454297 7.131916863 7.468516568 12862420 Catechol Organic Remediation Aromatics Other aromatics Pseudomonas sp. CA10 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.202358493 6.771572895 78167250 hrcA Stress Heat shock Chlorobium luteolum DSM 273 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon luteolum; 7.450584012 7.339996499 126638782 AceB Carbon cycling Carbon degradation others Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 7.704651853 7.267950092 217401441 TerC Metal Resistance Tellurium Bifidobacterium angulatum DSM 20098 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium angulatum; 7.410500466 7.507052388 8.132315531 197104901 ArsC Metal Resistance Arsenic Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 7.076932749 7.565804642 7.307004726 7.579005402 7.643938547 6729263 gyrB other category gyrB Mycobacterium scrofulaceum superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.783852042 7.549957398 7.844900521 7.769413538 8.017792701 219945090 SmtA Metal Resistance Miscellaneous Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 7.131788366 6.942886363 7.749733613 7.421772789 7.103717245 118474039 pcpE Organic Remediation Herbicides related compound Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 7.164939139 7.218082122 7.804853069 110280584 CopA Metal Resistance Copper Cytophaga hutchinsonii ATCC 33406 7.463377019 7.14966177 8.185117509 127511693 cytochrome Energy process Energy process Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 7.654646899 7.01480645 7.398873705 7.907639835 166368502 obgE Stress Radiation stress Microcystis aeruginosa NIES-843 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 6.930147562 7.507553201 68568617 cytochrome_b Bioleaching Electron transport Sulfolobus acidocaldarius DSM 639;Sulfolobus acidocaldarius 7.450639353 8.102141363 118766161 pulA Carbon cycling Carbon degradation Starch Bifidobacterium adolescentis ATCC 15703 7.50826005 7.456621613 7.525344555 7.445611997 19909719 gyrB other category gyrB bacterium PC3 superkingdom:Bacteria; 7.234864089 7.608351724 7.478103506 7.292357485 7.547856191 210074798 pheA Organic Remediation Aromatics Other aromatics Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.097876952 7.299530476 7.034073763 7.331601137 258598035 amoA Nitrogen Nitrification superkingdom:Bacteria; 7.166378847 7.473703118 7.670802699 7.653840838 7.234067616 254474314 glnA Stress Nitrogen limitation Pseudovibrio sp. JE062 7.430250638 7.836151658 7.753521502 7.602169738 7.397472666 150036074 sox Sulphur Sulphur oxidation Leucothrix mucor superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Leucothrix; 6.751437406 6.478926048 160429102 amyA Carbon cycling Carbon degradation Starch Clostridium phytofermentans ISDg superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium phytofermentans; 6.784319658 6.61189676 7.470417774 219543998 ChrA Metal Resistance Chromium Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 6.75799395 7.442343611 158519558 ara Carbon cycling Carbon degradation Hemicellulose Bacillus subtilis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.907052643 7.383143574 258508394 hly virulence hemolysin Lactobacillus rhamnosus GG superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 7.254828629 7.207727748 7.440039542 7.36027736 95110455 iro virulence Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 7.133045527 7.418768224 182633432 tfdA Organic Remediation Aromatics Chlorinated aromatics Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 7.219966756 7.522693475 11498283 todF Organic Remediation Others Archaeoglobus fulgidus DSM 4304 superkingdom:Archaea;phylum:Euryarchaeota;class:Archaeoglobi;order:Archaeoglobales;family:Archaeoglobaceae;genus:Archaeoglobus;species:Archaeoglobus fulgidus; 6.631411897 7.533772101 6.801429221 7.01489812 7.44899293 126720458 linB Organic Remediation Pesticides related compound Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.484888879 7.751882298 7.494822039 8.049656627 7.772652285 91782493 ChrA Metal Resistance Chromium Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.640069292 7.184391769 8.159266448 7.300662569 7.138563827 119462917 fnr Stress Oxygen stress Nodularia spumigena CCY9414 7.328057474 7.522309053 260536439 sigma_70 Stress Sigma factors Prevotella veroralis F0319 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella veroralis; 7.166366732 7.091320435 258594430 pstB Stress Phosphate limitation Desulfurivibrio alkaliphilus AHT2 7.629615945 7.324362547 7.828083185 242392023 perR Stress Oxygen stress Streptococcus dysgalactiae subsp. equisimilis GGS_124 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus dysgalactiae; 7.055872946 7.272964941 6.939543383 7.279382653 7.502974899 117675817 gyrB other category gyrB Okibacterium fritillariae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Okibacterium; 7.655570766 7.197248887 7.819981249 239800037 pilin virulence pilin Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 7.696182664 7.341266708 70999544 endochitinase Carbon cycling Carbon degradation Chitin Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 7.260537403 7.852698881 7.792750001 7.462179979 7.662770898 56965198 linB Organic Remediation Pesticides related compound Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 7.429663205 7.293530477 197789546 ZitB Metal Resistance Zinc Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 7.232027711 7.658501134 87302506 nifH Nitrogen Nitrogen fixation Synechococcus sp. WH 5701 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.791214125 8.333225403 8.057194465 8.329783388 19909539 gyrB other category gyrB Caulobacter fusiformis superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 7.072055912 7.366587487 125715257 ara Carbon cycling Carbon degradation Hemicellulose Clostridium thermocellum ATCC 27405 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 7.240724445 7.557067168 7.557104057 13476731 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 6.941474408 7.696386666 7.890982432 7.299270168 7.354500274 7.476934353 146403604 glycosyl_transferase_EPS Bioleaching EPS Acidiphilium cryptum JF-5 6.806588391 7.344680842 194308401 sox Sulphur Sulphur oxidation Pelodictyon phaeoclathratiforme BU-1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 7.068524388 7.240079031 15788813 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.591294347 7.718714527 7.639926739 242220117 phenol_oxidase Carbon cycling Carbon degradation Lignin Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 7.719563419 7.130225927 7.449917956 169793622 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.569685333 7.658737709 7.781086374 7.776494921 7.452695506 7.699838468 158524008 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.154214378 6.983337676 78172171 ppx Phosphorus Phosphorus utilization Chlorobium chlorochromatii CaD3 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium chlorochromatii; 6.778591855 7.53357678 227181737 sigma_24 Stress Sigma factors Corynebacterium glucuronolyticum ATCC 51866 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glucuronolyticum; 7.226890999 7.425200249 7.143735537 7.114420313 198266804 alkB Organic Remediation Other Hydrocarbons Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 7.332910137 7.302106206 7.341528722 7.330505641 118001963 proO Organic Remediation Aromatics Other aromatics Comamonas testosteroni KF-1 7.240998319 7.765982344 157148595 gyrB other category gyrB Citrobacter koseri ATCC BAA-895 7.301276193 7.177528049 7.563372826 7.704937336 91783061 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.494335053 7.665401147 15828116 AceB Carbon cycling Carbon degradation others Mycobacterium leprae TN superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium leprae; 7.138450153 7.812638784 112462569 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.206044447 6.767598833 7.643823857 7.189545262 7.352327016 111022350 TerC Metal Resistance Tellurium Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7.517376404 7.975948142 7.851886506 7.450880851 7.813274665 109392497 DNA_polymerase_type_I Bacteria phage REPLICATION Mycobacterium phage Che12 order:Caudovirales;family:Siphoviridae; 7.528938021 6.797021785 8.085163552 7.070885344 7.564484274 162568505 aoxB Metal Resistance Arsenic Acidovorax sp. 75 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 7.191578866 7.385572447 7.757738064 7.474786492 7.660464805 256796097 narI Stress Oxygen limitation Kangiella koreensis DSM 16069 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Kangiella;species:Kangiella koreensis; 6.736079462 6.978342339 6.854519491 116226134 pcc Carbon cycling Carbon fixation Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 7.510379138 7.354421976 149377778 pilin virulence pilin Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 7.593084113 7.309302998 73661064 Ni_Fe_hydrogenase Energy process Energy process Dehalococcoides sp. CBDB1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.12085853 6.937660252 71037796 pilin virulence pilin Psychrobacter arcticus 273-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter arcticus; 6.541389562 7.459102414 6.850240896 6.820281917 114429184 hydrogenase Energy process Energy process Desulfovibrio gigas superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 7.174137218 6.802047304 117928634 gyrB other category gyrB Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 7.3150782 7.373729825 7.201775526 7.542930434 86280961 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8.048602707 8.575891693 8.455014526 8.041146146 8.036762865 196114303 sigma_38 Stress Sigma factors Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 6.838082047 6.820519355 7.347062019 77464234 FTHFS Carbon cycling Acetogenesis Rhodobacter sphaeroides 2.4.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 6.714562933 7.197943613 227848832 B_lactamase_C Antibiotic resistance Beta-lactamases Halogeometricum borinquense DSM 11551 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halogeometricum;species:Halogeometricum borinquense; 7.341080802 7.263346665 28170639 SMR_antibiotics Antibiotic resistance transporter Staphylococcus aureus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus; 6.534868004 7.261485448 114541423 phn Organic Remediation Herbicides related compound Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.321039685 7.148895002 91782273 cymA Organic Remediation Aromatics Other aromatics Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.195670375 7.814860967 7.322737361 7.321438963 7.478696963 161502080 inv virulence invasion "Salmonella enterica subsp. arizonae serovar 62:z4,z23:--" superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 6.762711995 6.807621335 262274108 ureC Nitrogen Ammonification Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;species:Grimontia hollisae; 6.762275027 7.454876819 7.615805501 169812910 pcc Carbon cycling Carbon fixation Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 7.505162878 7.185541359 7.602402669 7.376571878 7.691369242 7.456837823 126347932 nmoA Organic Remediation Aromatics Nitoaromatics Streptomyces ambofaciens ATCC 23877 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ambofaciens; 7.320800707 8.069844656 7.759284994 8.001013293 49530951 pimF Organic Remediation Aromatics Aromatic carboxylic acid Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 6.905164552 7.67856273 7.515368739 7.05476649 7.464714481 118663672 nifH Nitrogen Nitrogen fixation Clostridium cellulolyticum H10 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium cellulolyticum; 7.777823429 7.542267902 211960597 ArsC Metal Resistance Arsenic Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 7.23387391 7.386887459 7.290655086 7.029160204 170112925 phenol_oxidase Carbon cycling Carbon degradation Lignin Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 7.101941255 7.519666172 59893226 nosZ Nitrogen Denitrification uncultured forest soil bacterium superkingdom:Bacteria; 7.619030006 7.416723088 7.326663508 7.273248532 73660924 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. CBDB1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.561025006 6.944093067 7.936163371 7.414915601 7.594354042 7.58406146 39648017 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.062547832 7.987314852 13177567 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 7.078304318 7.102170621 56965687 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 7.158277466 7.45516442 7.02568017 7.188535736 7.531603661 227369320 ara Carbon cycling Carbon degradation Hemicellulose Chryseobacterium gleum ATCC 35910 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Chryseobacterium;species:Chryseobacterium gleum; 7.444242801 7.42878984 260769642 pstC Stress Phosphate limitation Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 7.062130015 6.874831706 194307053 scaffold Bacteria phage STRUCTURAL Morganella phage MmP1 order:Caudovirales;family:Podoviridae;genus:T7-like viruses; 7.6890925 7.252866933 7.191700176 7.362984068 7.574154243 115398816 ppx Phosphorus Phosphorus utilization Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.538907659 7.741645261 110592489 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 6.878603191 7.602130076 7.443869053 7.205715575 269989035 pilin virulence pilin Legionella longbeachae D-4968 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella;species:Legionella longbeachae; 6.661916395 7.370382992 126668688 merB Metal Resistance Mercury Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 7.365804133 7.00231116 119817895 nitA Organic Remediation Aromatics Other aromatics Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8.256786769 7.470458919 8.294192627 7.314380868 7.657349099 114798904 obgE Stress Radiation stress Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 7.045724271 6.992099177 110826476 APS_AprA Sulphur adenylylsulfate reductase uncultured Thiobacillus sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 7.394508383 7.125646736 7.058932082 7.348166862 146192926 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.355197919 6.966990457 7.708145707 238869526 ureC Nitrogen Ammonification Edwardsiella ictaluri 93-146 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella ictaluri; 6.969211067 7.050473311 7.558702905 262036969 amoA Nitrogen Nitrification superkingdom:Archaea; 7.097175351 7.667797467 7.001161047 225210369 clpC Stress Protein stress Roseburia inulinivorans DSM 16841 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia inulinivorans; 7.768153007 8.098452061 90425882 fnr Stress Oxygen stress Rhodopseudomonas palustris BisB18 7.474265075 7.84686763 7.666356086 7.34993454 7.477271135 56311881 sigma_38 Stress Sigma factors Aromatoleum aromaticum EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 7.7037682 7.078306948 88698535 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Congregibacter litoralis KT71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 7.572994409 7.443418806 154698795 glx Carbon cycling Carbon degradation Lignin Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 7.113213902 7.159810099 7.542694005 90415245 fnr Stress Oxygen stress marine gamma proteobacterium HTCC2207 7.156470473 7.484666886 256832049 sigma_24 Stress Sigma factors Jonesia denitrificans DSM 20603 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 6.694763771 7.47038293 6.853617381 6.944751383 109900292 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 6.889087849 7.637666741 7.088909442 7.029869474 93454519 dsrA Sulphur sulfite reductase delta proteobacterium MLMS-1 6.839968322 7.311811811 254805140 iro virulence Neisseria meningitidis alpha14 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria meningitidis; 8.335127853 8.304715152 8.274320761 8.212515193 7.780092281 7.964295496 12720689 pstS Stress Phosphate limitation Pasteurella multocida subsp. multocida str. Pm70 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Pasteurella;species:Pasteurella multocida; 7.390866192 6.806351427 7.957390127 7.530831135 7.688882633 35213074 gyrB other category gyrB Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 6.860538557 7.629191367 82795280 type_III_secretion virulence secretion Pseudomonas syringae pv. tagetis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 7; 7.546107562 7.19736968 7.503520989 7.186491801 162707982 Catechol Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 7.389777163 7.1405317 7.355086185 227977788 sigma_24 Stress Sigma factors Tsukamurella paurometabola DSM 20162 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 7.092521236 7.422380801 7.199703424 188028119 MFS_antibiotic Antibiotic resistance transporter Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 6.939595417 6.761388575 7.452785156 7.161986908 7.686669122 72122946 vanA Carbon cycling Carbon degradation Others Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 6.992725595 7.534233548 7.243342769 7.159230547 209401894 narG Nitrogen Denitrification uncultured bacterium 7.202339834 7.583382697 7.527398361 7.342686565 7.450973022 156973354 AceB Carbon cycling Carbon degradation others Vibrio harveyi ATCC BAA-1116 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 6.750497281 6.931645411 7.147699693 7.219608816 197715087 ArsC Metal Resistance Arsenic Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 7.495278985 7.258134606 7.556381045 71906728 fnr Stress Oxygen stress Dechloromonas aromatica RCB 8.177197153 7.878511442 7.704590433 7.406615013 78220091 fnr Stress Oxygen stress Desulfovibrio desulfuricans subsp. desulfuricans str. G20 6.990504874 7.393486629 37654996 linD Organic Remediation Pesticides related compound Sphingomonas paucimobilis superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 7.365192761 8.001341878 7.233464654 6.977356876 85716465 fnr Stress Oxygen stress Nitrobacter sp. Nb-311A 6.906811072 7.541446776 262403150 hly virulence hemolysin Vibrio sp. RC586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.566227385 7.785686505 7.914612567 7.85475603 7.456674909 229541509 pstB Stress Phosphate limitation Bacillus coagulans 36D1 6.676247603 7.593291663 189185963 NiR Nitrogen Assimilatory N reduction Methylacidiphilum infernorum V4 superkingdom:Bacteria;phylum:Verrucomicrobia;order:Methylacidiphilales;family:Methylacidiphilaceae;genus:Methylacidiphilum;species:Methylacidiphilum infernorum; 7.160613997 7.280056062 40804948 phn Organic Remediation Herbicides related compound Pseudomonas stutzeri superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.542193559 7.848383767 7.269720723 8.018163032 240168068 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 7.667748863 7.249226619 7.414307753 7.741637411 78221517 nrfA Nitrogen Dissimilatory N reduction Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 7.440466241 7.174011801 229869621 B_lactamase_C Antibiotic resistance Beta-lactamases Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 6.941683905 6.976955134 219667895 fnr Stress Oxygen stress Desulfitobacterium hafniense DCB-2 6.796447719 7.248457402 168991443 TehB Metal Resistance Tellurium Lysinibacillus sphaericus C3-41 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Lysinibacillus;species:Lysinibacillus sphaericus; 6.814925233 7.344017148 146400300 fnr Stress Oxygen stress Acidiphilium cryptum JF-5 7.159992563 7.657413782 118728185 gyrB other category gyrB Clostridium cellulolyticum H10 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium cellulolyticum; 7.168579795 7.84676112 223936569 sigma_24 Stress Sigma factors bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 8.325795302 8.310737724 32895226 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.073485661 7.6147137 189433044 ppx Phosphorus Phosphorus utilization Bacteroides coprocola DSM 17136 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides coprocola; 6.742304841 7.335862394 6.999557117 7.505237676 66866399 pilin virulence pilin Neisseria sicca superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria; 7.484072114 7.199631909 29366729 major_capsid_protein Bacteria phage STRUCTURAL Pseudomonas phage gh-1 order:Caudovirales;family:Podoviridae;genus:T7-like viruses; 7.051134776 7.186591947 7.431381974 7.415097356 28542623 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.568137522 7.596534161 7.823573394 7.692781056 167353202 sigma_24 Stress Sigma factors Shewanella halifaxensis HAW-EB4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella halifaxensis; 7.152294309 7.108471234 7.632124299 148571252 sigma_32 Stress Sigma factors Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 7.080198589 7.365866671 262274525 endochitinase Carbon cycling Carbon degradation Chitin Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;species:Grimontia hollisae; 7.120880242 7.514032059 7.890191293 134142919 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 7.371691604 7.129272404 109660010 ureC Nitrogen Ammonification unidentified bacterial contaminant superkingdom:Bacteria; 8.060464643 8.192516947 7.729637423 7.949045142 146310528 phoB Stress Phosphate limitation Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 7.08139028 7.518952572 72162017 xylanase Carbon cycling Carbon degradation Hemicellulose Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 6.652461104 7.564280908 6.839954081 6.99515831 255035604 sigma_24 Stress Sigma factors Dyadobacter fermentans DSM 18053 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 6.63333592 7.55437958 262275741 rubisco Carbon cycling Carbon fixation Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;species:Grimontia hollisae; 7.154313123 7.411363373 7.277785118 7.201260097 7.410609726 118703930 nmoA Organic Remediation Aromatics Nitoaromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 7.83798799 7.509100554 7.293697023 7.407438937 150258542 CadA Metal Resistance Cadmium Victivallis vadensis ATCC BAA-548 superkingdom:Bacteria;phylum:Lentisphaerae;family:Victivallaceae;genus:Victivallis;species:Victivallis vadensis; 7.83246907 7.641584006 7.664581886 7.527355914 109290302 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.701884241 7.575827757 7.833844115 108804866 cellobiase Carbon cycling Carbon degradation Cellulose Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 7.097336438 7.504056581 7.206806311 7.25145024 7.77929934 78367229 glucoamylase Carbon cycling Carbon degradation Starch Shewanella sp. PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 7.190735415 7.056929535 7.656419561 7.810281444 84394203 SMR_antibiotics Antibiotic resistance transporter Vibrio splendidus 12B01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 7.274840383 6.8439506 6.910193597 6.736884865 88697338 gyrB other category gyrB Morganella psychrotolerans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Morganella; 7.864341422 7.82017086 7.876629812 227872887 ppk Phosphorus Phosphorus utilization Oribacterium sinus F0268 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Oribacterium;species:Oribacterium sinus; 7.300842187 7.541021536 158439748 atzA Organic Remediation Herbicides related compound Clostridium bolteae ATCC BAA-613 7.354331595 7.280933219 7.384777201 7.385256752 7.576813734 7.583749876 134094777 CopA Metal Resistance Copper Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 6.971285069 7.423674951 7.240954989 7.142829997 7.565651503 167541244 mcrA Carbon cycling Methane Methane production uncultured bacterium superkingdom:Bacteria; 6.737701686 6.878352527 7.205524524 6.990861 7.426180179 255332740 SMR_antibiotics Antibiotic resistance transporter Geobacillus sp. Y4.1MC1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 6.936525502 7.523870294 499736 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.736354271 7.768329976 7.31638631 7.602385413 7.419597535 124110763 BADH Organic Remediation Aromatics Other aromatics Sphingobium yanoikuyae superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 7.316093289 7.613451949 145226755 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. DK17 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7.324641217 7.15560487 262349723 arcA Stress Oxygen limitation Vibrio sp. RC586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8.192447517 8.234633624 118571965 oxyR Stress Oxygen stress Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 7.442387381 7.737174774 8.001968792 7.805176501 7.92348343 118046899 atzA Organic Remediation Herbicides related compound Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 6.848891933 7.281495455 53850901 dsrA Sulphur sulfite reductase anaerobic bacterium EtOH8 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae; 6.786942013 7.294709252 7.518998367 7.235836023 6.919637795 7.384679452 241759009 cap virulence capsule Neisseria flavescens SK114 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria flavescens; 7.191129721 7.312030595 239812820 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 6.826463785 7.486883088 37703769 phenol_oxidase Carbon cycling Carbon degradation Lignin Coprinopsis cinerea superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis; 7.418636921 7.595919388 88799857 proO Organic Remediation Aromatics Other aromatics Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 6.824914907 7.531008139 158321047 proV Stress Osmotic stress Alkaliphilus oremlandii OhILAs superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus oremlandii; 6.865265203 7.348687063 206678827 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.417813004 7.017101744 7.65438643 7.09665268 6.854739946 7.421940985 121534440 narI Stress Oxygen limitation Thermosinus carboxydivorans Nor1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Thermosinus;species:Thermosinus carboxydivorans; 6.819189141 7.617329314 7.307819595 7.196869963 7.475772351 27924215 FTHFS Carbon cycling Acetogenesis Xenopus laevis superkingdom:Eukaryota;kingdom:Metazoa;phylum:Chordata;class:Amphibia;order:Anura;family:Pipidae;genus:Xenopus; 7.409368412 7.978414138 19912135 gyrB other category gyrB Chitinophaga pinensis superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;genus:Chitinophaga; 7.148786169 7.056004793 91689988 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.573368105 7.445237164 7.744305968 7.681722867 7.968283349 88864194 pimF Organic Remediation Aromatics Aromatic carboxylic acid Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 7.598919404 7.902117571 8.03314517 7.931751687 7.838174216 7.740525455 148264003 hydrogenase Energy process Energy process Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 6.947437535 7.211897056 7.694856037 7.194834555 7.359392381 196256088 ureC Nitrogen Ammonification Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 6.805538657 7.442962679 7.725283061 7.126484522 7.394262914 88789780 pilin virulence pilin Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 7.575056177 7.159900648 106763197 ureC Nitrogen Ammonification Psychromonas ingrahamii 37 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas;species:Psychromonas ingrahamii; 6.932842104 7.709585988 7.276747705 7.603789842 7.418546649 91697351 pstB Stress Phosphate limitation Polaromonas sp. JS666 7.127192676 7.376325229 7.455964374 114319170 gyrB other category gyrB Alkalilimnicola ehrlichei MLHE-1 7.358409146 7.789478963 7.385731053 7.619503992 254428908 SMR_antibiotics Antibiotic resistance transporter Alcanivorax sp. DG881 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 7.060991754 6.98435101 118424373 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.279610191 7.532361131 7.406114925 7.762747485 190699392 nmoA Organic Remediation Aromatics Nitoaromatics Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7.178820882 7.587959519 7.188061049 7.355567359 7.575818418 211956882 alkK Organic Remediation Others Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 7.403899906 7.492349627 7.041334786 7.020698943 150388348 katE Stress Oxygen stress Alkaliphilus metalliredigens QYMF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus metalliredigens; 7.016895133 6.959429296 170695505 narI Stress Oxygen limitation Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 7.2772935 7.498360707 157285377 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 6.785248926 6.729860632 7.629092605 85723576 alkK Organic Remediation Others Syntrophus aciditrophicus SB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Syntrophus;species:Syntrophus aciditrophicus; 7.131783868 7.576040121 240859352 Tet Antibiotic resistance other Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.942341882 7.85230039 7.989704379 157804754 AprA Sulphur adenylylsulfate reductase Thiodictyon bacillosum 7.193951589 7.458970671 7.034147268 7.145359934 23978255 gyrB other category gyrB Oscillatoria sp. PCC 7112 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Oscillatoria; 7.353522329 7.816064538 170141139 gyrB other category gyrB Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 7.237562577 7.035631962 7.418128604 7.404950394 7.629857369 7.851200043 118762760 vanA Carbon cycling Carbon degradation Others Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 6.758203728 7.617154412 7.064715977 7.270524215 121528391 pcc Carbon cycling Carbon fixation Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 7.14732323 7.378618755 7.578363723 7.474477204 7.469326571 156048380 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 6.967458694 7.42741673 90420707 phn Organic Remediation Herbicides related compound Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 6.66071475 7.453001116 194292647 fnr Stress Oxygen stress Cupriavidus taiwanensis 6.868566815 7.395834791 27462198 ureC Nitrogen Ammonification Helicobacter bizzozeronii superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter; 6.905714656 7.040185471 7.296838907 49654086 grpE Stress Heat shock Debaryomyces hansenii superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Debaryomyces; 6.703777817 7.366107964 260463130 gyrB other category gyrB Mesorhizobium opportunistum WSM2075 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 7.319856215 7.767254863 7.425812103 7.350199065 7.514974652 255036588 sigma_24 Stress Sigma factors Dyadobacter fermentans DSM 18053 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 7.807175974 8.108654734 7.781482702 30025895 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.419340995 7.382902133 7.249448468 7.376004832 7.061627856 28379650 SMR_antibiotics Antibiotic resistance transporter Lactobacillus plantarum WCFS1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus plantarum; 7.08788508 7.364294104 109452399 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.198609528 7.281207151 31544593 sigma_70 Stress Sigma factors Mycoplasma gallisepticum R superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Mycoplasmatales;family:Mycoplasmataceae;genus:Mycoplasma;species:Mycoplasma gallisepticum; 6.699951365 7.477862236 56963583 alkH Organic Remediation Other Hydrocarbons Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 6.81859653 6.98719422 7.336862861 261286238 katE Stress Oxygen stress Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.332441517 7.35192999 7.352746237 7.257813207 7.44137142 151302137 APS_AprB Sulphur adenylylsulfate reductase Desulfovibrio ferrophilus 7.069447403 7.001547515 126703042 Catechol Organic Remediation Aromatics Other aromatics Rhodobacterales bacterium HTCC2150 7.437619467 7.868307005 7.983753792 7.674962654 7.815712573 134142987 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 7.325652569 7.156303589 7.216214031 7.91274451 20088982 ppx Phosphorus Phosphorus utilization Methanosarcina acetivorans C2A superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina acetivorans; 7.847766888 8.084255623 8.016978878 115421357 obgE Stress Radiation stress Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 7.426295793 7.469046917 7.134784907 7.506721335 158341000 linB Organic Remediation Pesticides related compound Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;genus:Acaryochloris;species:Acaryochloris marina; 6.877969648 7.149738253 116633912 narG Nitrogen Denitrification uncultured bacterium 7.157737242 7.282343269 7.561450051 7.23998326 7.429479924 94423579 hrcA Stress Heat shock Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 7.465937263 7.54622086 32447867 ppx Phosphorus Phosphorus utilization Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 6.768304452 7.25544602 510390 cellobiase Carbon cycling Carbon degradation Cellulose Pantoea agglomerans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 6.827286247 6.771563635 7.572755627 213964522 ahpC Stress Oxygen stress Corynebacterium amycolatum SK46 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium amycolatum; 7.397849721 7.321326036 6.88836118 7.023666058 177839695 gyrB other category gyrB Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 7.551721731 7.682810119 90202147 pcc Carbon cycling Carbon fixation Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 7.057740238 7.808482874 7.66560291 7.8196368 7.415399988 7.645483545 88789666 glnA Stress Nitrogen limitation Nitrococcus mobilis Nb-231 7.160939286 7.234391773 7.650243414 219666434 tutFDG Organic Remediation Aromatics BTEX and related aromatics Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 7.327417001 7.660115015 7.838720527 7.508755806 7.532575604 84043101 Catechol Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 6.745825629 7.634246795 254462654 cydB Stress Oxygen limitation Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.260854646 7.503130883 198248617 hly virulence hemolysin Acidithiobacillus ferrooxidans ATCC 53993 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 7.665663955 7.417868194 145318244 katE Stress Oxygen stress Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 7.193155043 7.938268472 8.073863298 7.675788891 7.8025265 88701946 AceB Carbon cycling Carbon degradation others Congregibacter litoralis KT71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 7.007115752 6.946444086 62131478 ppk Phosphorus Phosphorus utilization uncultured bacterium superkingdom:Bacteria; 6.944377691 7.213651465 251833926 pstB Stress Phosphate limitation Fusobacterium varium ATCC 27725 7.031247171 7.687834284 212534022 phoA Stress Phosphate limitation Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 6.872054689 6.774780469 7.374970361 145608532 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 7.034840031 7.134784907 7.250480255 92392780 pilin virulence pilin Psychrobacter cryohalolentis K5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter cryohalolentis; 8.203767775 8.373537904 33862972 pstB Stress Phosphate limitation Prochlorococcus marinus str. MIT 9313 6.796525963 7.54995399 208009929 arcA Stress Oxygen limitation Aliivibrio salmonicida LFI1238 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Aliivibrio salmonicida; 6.553753234 7.381066749 220930788 xylA Carbon cycling Carbon degradation Hemicellulose Clostridium cellulolyticum H10 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium cellulolyticum; 6.927468528 7.3958857 145236348 phenol_oxidase Carbon cycling Carbon degradation Lignin Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 6.801270263 7.298656579 78610679 CopA Metal Resistance Copper Lactobacillus sakei subsp. sakei 23K superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus sakei; 7.492280046 7.090531737 150036092 sox Sulphur Sulphur oxidation Chlorobaculum parvum superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum; 6.759022798 7.305935515 7.108653458 6.917788916 121610741 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 7.253666325 7.490790866 157374664 cytochrome Energy process Energy process Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 7.294824317 7.57185734 46913619 TerC Metal Resistance Tellurium Photobacterium profundum SS9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 7.08160368 6.82380648 205373081 pcc Carbon cycling Carbon fixation Bacillus coahuilensis m4-4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coahuilensis; 7.258717892 7.124544849 119947283 phn Organic Remediation Herbicides related compound Psychromonas ingrahamii 37 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas;species:Psychromonas ingrahamii; 6.837539703 6.965293299 7.059044765 7.020440517 212679554 nrfA Nitrogen Dissimilatory N reduction Providencia rustigianii DSM 4541 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 6.858429237 7.576091502 21228108 pstC Stress Phosphate limitation Methanosarcina mazei Go1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina mazei; 6.816382545 6.699077191 7.604830439 283479955 iro virulence Erwinia pyrifoliae DSM 12163 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia pyrifoliae; 7.341708222 7.789658941 7.241919323 7.185042536 7.561949103 42552561 pheA Organic Remediation Aromatics Other aromatics Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 7.96356186 8.134166993 7.370837164 7.25208915 7.775213503 4633580 nosZ Nitrogen Denitrification uncultured bacterium 696K superkingdom:Bacteria; 7.136282946 7.718245458 7.242345689 7.178469263 156519337 BMO Organic Remediation Other Hydrocarbons Pseudomonas butanovora superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 7.419475591 7.563486811 87198515 fnr Stress Oxygen stress Novosphingobium aromaticivorans DSM 12444 7.28059811 7.957656978 6.995274581 7.526211081 61196929 B_lactamase_C Antibiotic resistance Beta-lactamases Erwinia amylovora superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia; 6.983543599 7.016955527 149811912 pcc Carbon cycling Carbon fixation Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.081626452 7.304686287 8.10268808 7.28906964 7.385875918 89096453 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 6.964651781 7.137985367 261418379 obgE Stress Radiation stress Geobacillus sp. Y412MC61 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.421461141 6.928426169 217502881 AceB Carbon cycling Carbon degradation others Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 7.264034368 7.284770076 7.490003938 7.245784428 7.439583343 148871841 MATE_antibiotic Antibiotic resistance transporter Vibrio harveyi HY01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 7.176811226 6.917571944 7.617778157 6.983048772 7.250844979 168705187 sigma_24 Stress Sigma factors Gemmata obscuriglobus UQM 2246 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata;species:Gemmata obscuriglobus; 7.757207233 7.542415581 7.290801329 7.547424324 218666451 glucoamylase Carbon cycling Carbon degradation Starch Acidithiobacillus ferrooxidans ATCC 23270 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 7.291937878 7.467381556 118471038 nicdehydr Organic Remediation Aromatics Heterocyclic aromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 6.844685493 6.731099863 260613801 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 7.468250841 8.243635168 7.714908883 7.828486659 8.046180576 7.96621289 8118287 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 7.0546224 7.463268159 90106260 nhh Organic Remediation Aromatics Nitoaromatics Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.11055243 6.807190463 190576011 pilin virulence pilin Stenotrophomonas maltophilia K279a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 7.419203433 7.730406489 170721878 catB Organic Remediation Aromatics BTEX and related aromatics Pseudomonas putida W619 7.462791465 7.389367023 262402223 iro virulence Vibrio sp. RC586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.553449095 7.685744188 7.704311125 7.215968803 7.564762982 8246824 alkK Organic Remediation Others Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 7.348606574 7.081451781 159045077 ophC Organic Remediation Aromatics Aromatic carboxylic acid Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 7.591900435 7.695048266 7.628706962 7.705543793 150843795 nagG Organic Remediation Aromatics Aromatic carboxylic acid Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 7.360127408 7.130804718 7.683414815 7.039080459 7.412066055 113198238 ppx Phosphorus Phosphorus utilization Campylobacter fetus subsp. fetus 82-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter fetus; 6.6794864 7.084436033 260588590 obgE Stress Radiation stress Blautia hansenii DSM 20583 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Blautia;species:Blautia hansenii; 7.439441289 7.105373843 7.444976804 227339690 fnr Stress Oxygen stress Rhizobium sp. NGR234 7.021023536 6.984552725 76882658 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nitrosococcus oceani ATCC 19707 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 7.445351226 7.338207689 7.477085864 7.092505084 148501508 vanA Carbon cycling Carbon degradation Others Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 7.859031772 8.506215152 8.426967457 8.087236079 8.220905894 186468570 ahpC Stress Oxygen stress Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 6.848266878 7.368745129 261338538 hly virulence hemolysin Bifidobacterium gallicum DSM 20093 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 6.784523985 7.465034149 91203321 GroES Stress Heat shock Candidatus Kuenenia stuttgartiensis superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;genus:Candidatus Kuenenia; 7.106155351 6.944976528 121703924 pheA Organic Remediation Aromatics Other aromatics Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7.805060534 7.575775999 7.403879584 7839375 ureC Nitrogen Ammonification Prochlorococcus marinus superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 8.181936808 8.186086059 260665486 phoB Stress Phosphate limitation Lactobacillus jensenii SJ-7A-US superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus jensenii; 7.22834472 7.417629604 7.39966084 7.345554864 950106 rubisco Carbon cycling Carbon fixation superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 7.070157865 7.531200751 7.321816418 7.432557432 7.425487813 124363930 katE Stress Oxygen stress Methanocorpusculum labreanum Z superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanocorpusculaceae;genus:Methanocorpusculum;species:Methanocorpusculum labreanum; 6.578571191 7.16246439 213523740 sigma_24 Stress Sigma factors Bifidobacterium longum subsp. infantis ATCC 15697 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 7.366426577 7.831514832 29828245 Catechol Organic Remediation Aromatics Other aromatics Streptomyces avermitilis MA-4680 6.884397528 6.914563484 7.31710396 7.492242465 19909591 gyrB other category gyrB Brevundimonas variabilis superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas; 6.878872809 6.56429675 7.352762996 7.024663114 6.990574262 7.325615861 238759170 proV Stress Osmotic stress Yersinia aldovae ATCC 35236 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia aldovae; 7.26186922 7.841658768 7.870884181 7.917177444 212545631 endoglucanase Carbon cycling Carbon degradation Cellulose Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.071565493 7.545248165 7.039905515 7.068465482 163793709 AceA Carbon cycling Carbon degradation others alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 7.430075463 7.486026135 7.603498804 194596483 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.071171565 7.380079859 56798857 catechol_B Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 7.417563523 7.496753872 7.443998897 7.518807126 7.873314724 9368951 alkK Organic Remediation Others Neurospora crassa superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora; 7.091399275 7.153400568 7.11542344 7.370402219 114314861 grpE Stress Heat shock Granulibacter bethesdensis CGDNIH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 7.186234009 6.781709468 8.045189823 189193141 adpB Organic Remediation Pesticides related compound Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 6.939245439 7.135801351 7.68917533 7.113155715 7.253633468 7.539920951 224438019 ahpC Stress Oxygen stress Helicobacter cinaedi CCUG 18818 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter cinaedi; 7.19407106 7.508481304 7.538397667 7.633380278 134139698 ChrA Metal Resistance Chromium Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 7.483681295 7.732556289 7.731011114 7.719827891 7.417280123 7.553674047 220695753 pheA Organic Remediation Aromatics Other aromatics Aspergillus flavus NRRL3357 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus flavus; 7.267966448 7.17444308 7.572855048 109632453 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 6.980248145 7.470900051 219869855 dsrA Sulphur sulfite reductase Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 7.314951203 7.678456671 254490338 pstA Stress Phosphate limitation Methylophaga thiooxidans DMS010 6.733614869 7.35797901 114340126 nitA Organic Remediation Aromatics Other aromatics Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 6.869464216 7.393897316 114553479 hly virulence hemolysin Mariprofundus ferrooxydans PV-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Zetaproteobacteria;order:Mariprofundales;family:Mariprofundaceae;genus:Mariprofundus;species:Mariprofundus ferrooxydans; 7.272548076 7.277393833 7.957365712 7.66634495 7.591095255 50982437 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7.046586269 6.908470821 7.184401494 7.759393223 86557226 cydA Stress Oxygen limitation Synechococcus sp. JA-2-3B'a(2-13) superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.481897702 7.173181705 7.573610674 7.419596989 7.515700877 88771700 rubisco Carbon cycling Carbon fixation Thiobacillus thioparus superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 7.451745501 7.955507471 7.42837088 7.692512051 56911973 katE Stress Oxygen stress Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 7.044678205 7.493912169 228557028 phoA Stress Phosphate limitation Citrobacter youngae ATCC 29220 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter youngae; 6.865137606 7.232067755 194346969 Arylest Organic Remediation Aromatics Other aromatics Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 7.008581722 7.269117442 222453719 CopA Metal Resistance Copper Halorubrum lacusprofundi ATCC 49239 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 7.050054432 6.941670455 4028020 dsrA Sulphur sulfite reductase Desulfotomaculum thermocisternum superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 7.486960673 7.285826497 7.33896195 7.609900797 7.676964532 121529687 ChrA Metal Resistance Chromium Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 7.126737375 6.775439138 7.232474858 7.099638763 76882433 ZitB Metal Resistance Zinc Nitrosococcus oceani ATCC 19707 7.420006714 6.982903878 33385653 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 6.751226204 7.257651654 7.000111681 7.046849256 167630833 CopA Metal Resistance Copper Heliobacterium modesticaldum Ice1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Heliobacteriaceae;genus:Heliobacterium;species:Heliobacterium modesticaldum; 7.139883691 7.165974051 17741838 nmoA Organic Remediation Aromatics Nitoaromatics Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.220250908 6.637043751 7.65005378 118581560 pstA Stress Phosphate limitation Pelobacter propionicus DSM 2379 7.18284462 7.720638554 7.359237341 7.789647317 7.646786002 25140399 phenol_oxidase Carbon cycling Carbon degradation Lignin Pycnoporus cinnabarinus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Pycnoporus; 7.555195301 7.038149178 115387907 pheA Organic Remediation Aromatics Other aromatics Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.006042556 7.151896739 124496330 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 7.014456528 7.107514953 7.533166644 46579575 AmiE Organic Remediation Aromatics Other aromatics Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 6.895612209 7.369335159 70986332 iro virulence Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 7.457874022 7.435688127 7.572515609 7.042152311 7.400861362 262350893 hly virulence hemolysin Vibrio sp. RC586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 6.911905234 6.736795861 7.44182492 15899866 Fe_S_cluster_binding_protein Bioleaching Electron transport Sulfolobus solfataricus P2 6.866853716 7.406403128 229818149 fnr Stress Oxygen stress Bifidobacterium angulatum DSM 20098 7.200911287 7.768732894 7.808919341 7.489041979 119196869 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Coccidioides immitis RS superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides immitis; 6.916535014 7.470821506 2635316 ara Carbon cycling Carbon degradation Hemicellulose Bacillus subtilis subsp. subtilis str. 168 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 7.017096925 7.482143397 196233637 ahpC Stress Oxygen stress Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 7.051588519 7.319499703 194365161 pilin virulence pilin Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 7.686599653 8.063584862 153832132 pilin virulence pilin Vibrio harveyi HY01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 7.399242762 7.733482402 7.404355997 7.467419702 7.627702621 70725655 narG Nitrogen Denitrification Staphylococcus haemolyticus JCSC1435 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus haemolyticus; 7.437026292 7.414019419 159121873 silC Metal Resistance Silver Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.591280371 7.107757993 7.728846502 7.189805846 7.195076777 157095101 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 6.925269528 6.990645969 6.968033876 7.126138091 55231378 mhpC Organic Remediation Aromatics Aromatic carboxylic acid Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 7.162942364 6.48152416 7.472409723 260610788 ahpF Stress Oxygen stress Vibrio metschnikovii CIP 69.14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio metschnikovii; 7.22052068 6.926955659 37993267 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 6.915484582 7.185708911 187977901 ppx Phosphorus Phosphorus utilization Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 6.942056331 6.898099052 126643225 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Acinetobacter baumannii ATCC 17978 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 6.916535014 6.743264885 7.560851866 6049281 nitro Organic Remediation Others Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.344135111 7.403705593 78194655 pimF Organic Remediation Aromatics Aromatic carboxylic acid Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 6.984852413 7.41421826 23345326 B_lactamase_A Antibiotic resistance Beta-lactamases Klebsiella oxytoca superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella; 7.431268174 7.197753675 7.125267936 7.240908662 7.398381529 153008963 ChrA Metal Resistance Chromium Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 7.105741048 7.084600299 7.816768072 7.299286244 6.956551166 7.220268512 126715679 pcc Carbon cycling Carbon fixation Roseobacter sp. CCS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 6.983649419 6.91901088 118705595 nitA Organic Remediation Aromatics Other aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 7.083696205 7.302992313 7.218549219 7.350542128 266631119 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 7.409538967 7.513040167 116672061 pheA Organic Remediation Aromatics Other aromatics Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.563267679 7.437004383 7.484665417 114565704 sigma_24 Stress Sigma factors Syntrophomonas wolfei subsp. wolfei str. Goettingen superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Syntrophomonadaceae;genus:Syntrophomonas;species:Syntrophomonas wolfei; 7.605970459 7.430636849 7.539107626 7.602529833 260911629 sigma_70 Stress Sigma factors Prevotella sp. oral taxon 472 str. F0295 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella sp. oral taxon 472; 6.702768526 7.194981006 6.726042079 7.396604237 207090140 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Nitrosococcus oceani AFC27 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 7.715709701 7.601457297 7.798082474 61655663 gdh Nitrogen Ammonification Lactococcus lactis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Lactococcus; 6.843348379 7.424435366 6.995050285 7.265861846 57235710 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6.772851777 7.027519807 112463229 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 6.708802851 7.395803966 118617093 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 7.374709502 6.960383584 7.451212797 7.018986707 7.060159721 110647058 NirB Nitrogen Assimilatory N reduction Alcanivorax borkumensis SK2 7.290621524 7.521091789 163737985 hrcA Stress Heat shock Phaeobacter gallaeciensis BS107 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 6.783154452 7.537543266 189191538 katE Stress Oxygen stress Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7.122848551 7.390050371 7.358761799 7.695608667 134095147 pilin virulence pilin Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 7.252368341 7.78107497 7.587509023 7.400075977 7.44062221 6644323 gyrB other category gyrB Aeromonas hydrophila superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas; 7.727703278 7.054487125 7.243530176 7.056656952 7.601355499 52347049 bglP Stress Glucose limitation Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 7.148115207 7.441012039 118413601 katE Stress Oxygen stress Campylobacter fetus subsp. fetus 82-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter fetus; 6.679996997 7.152513142 193214631 pstC Stress Phosphate limitation Chloroherpeton thalassium ATCC 35110 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chloroherpeton;species:Chloroherpeton thalassium; 7.462977989 7.626516537 7.744479275 7.540327733 219848515 atzA Organic Remediation Herbicides related compound Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 7.036982409 7.467075058 7.593636249 126631043 AceA Carbon cycling Carbon degradation others Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 6.555809824 6.918139027 71907785 silC Metal Resistance Silver Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 7.556782149 7.664606609 110637021 sigma_24 Stress Sigma factors Cytophaga hutchinsonii ATCC 33406 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Cytophaga;species:Cytophaga hutchinsonii; 7.290151258 7.109299272 7.531816077 150003955 gyrB other category gyrB Bacteroides vulgatus ATCC 8482 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides vulgatus; 7.492320306 7.582613304 7.769896855 33640788 sigma_70 Stress Sigma factors Prochlorococcus marinus str. MIT 9313 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 7.866766279 7.413949968 7.460278183 7.677599062 8.045895365 223892043 endochitinase Carbon cycling Carbon degradation Chitin bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 7.389260549 7.684094062 7.826577504 7.785000531 159889938 sigma_70 Stress Sigma factors Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 6.806988007 7.154294229 1514627 sigma_38 Stress Sigma factors Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 6.837035793 7.272414214 7.381848026 145589715 ahpC Stress Oxygen stress Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 7.734790095 7.732241509 7.418465606 7.294563303 7.292652829 134099498 cydB Stress Oxygen limitation Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 7.745315308 6.801464244 7.956279548 7.02604012 7.165260462 50082962 linB Organic Remediation Pesticides related compound Lyngbya majuscula superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Lyngbya; 6.820066484 7.538468679 7.270409068 7.368866857 7.528435965 116047905 mer Metal Resistance Mercury Brevibacillus sp. HT1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus; 7.320250832 7.867871572 7.706430836 7.722086248 7.704663946 218229179 nplT Carbon cycling Carbon degradation Starch Roseburia intestinalis L1-82 7.280628416 7.252436042 67086268 exaA Organic Remediation Chlorinated solvents Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 7.175709099 7.486387313 88806539 Arylest Organic Remediation Aromatics Other aromatics Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 7.421396334 6.87847715 7.910228605 7.134779101 7.689410507 59711140 alkK Organic Remediation Others Vibrio fischeri ES114 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Vibrio fischeri; 6.832353109 7.417745285 182414364 pstB Stress Phosphate limitation Opitutus terrae PB90-1 6.904593961 7.044298434 7.610282792 88854861 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid marine actinobacterium PHSC20C1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 7.024092044 7.270337008 83317036 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.35685915 7.830652507 7.916048689 7.910901197 7.586564367 149380527 helicase_family_4 Bacteria phage REPLICATION Enterobacteria phage Phi1 6.858182591 7.186219478 7.465127789 7.073003 520579 non_contractile_major_tail_protein Bacteria phage STRUCTURAL Enterobacteria phage BF23 6.964370327 6.697990859 119947603 TerC Metal Resistance Tellurium Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 6.706869755 7.377968124 7.256432369 7.063577667 91790967 glnA Stress Nitrogen limitation Polaromonas sp. JS666 7.038084908 7.6066365 7.538759035 7.618643514 7.5318413 111220093 TerZ Metal Resistance Tellurium Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 7.843774159 6.973773001 7.294409572 7.510718158 62424201 ChrA Metal Resistance Chromium Brevibacterium linens BL2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium linens; 7.696268468 7.282537407 7.193555101 7.800589255 85668964 pcc Carbon cycling Carbon fixation Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.372133714 7.941272568 7.587570361 7.182974543 46914417 CopA Metal Resistance Copper Photobacterium profundum SS9 7.199029162 7.582412426 7.395397177 7.587013833 7.799629626 iegAssA16 AssA Carbon cycling Carbon degradation Others 6.972490837 7.820123343 7.616629496 7.33487769 7.528758549 189495747 sigma_24 Stress Sigma factors Chlorobium phaeobacteroides BS1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 6.75047609 7.276601873 7.253433199 7.242072869 7.08940166 7.321049694 218245044 sigma_70 Stress Sigma factors Cyanothece sp. PCC 8801 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.034781732 7.282187904 7.340060598 7.313150207 1673939 groEL Stress Heat shock Mycoplasma pneumoniae M129 7.10705926 7.538665752 169624993 nagG Organic Remediation Aromatics Aromatic carboxylic acid Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 6.922126388 6.882200156 118058649 Arylest Organic Remediation Aromatics Other aromatics Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 6.808607966 7.61945877 150960053 SMR_antibiotics Antibiotic resistance transporter Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 7.440093764 7.606303552 7.609360766 7.424081902 7.366118755 121593892 CopA Metal Resistance Copper Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 7.47858634 7.78931501 8.146110246 7.824980118 166090561 sigma_70 Stress Sigma factors Microcystis aeruginosa NIES-843 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 7.981614609 7.66437569 7.872983016 7.532131108 8.105368259 192285584 fnr Stress Oxygen stress Rhodopseudomonas palustris TIE-1 6.805398614 7.240773905 17385490 narG Nitrogen Denitrification uncultured bacterium 7.11680217 7.434787525 156056458 AceB Carbon cycling Carbon degradation others Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 7.335265606 7.77513259 7.438856366 6.909426394 7.604188038 89949253 gyrB other category gyrB Saccharophagus degradans 2-40 7.031981986 6.820670437 7.279174097 264679819 fnr Stress Oxygen stress Comamonas testosteroni CNB-2 7.146555383 7.84124965 7.813075204 7.81681338 7.434366186 112462441 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.734292315 7.938884374 7.497771902 7.219241731 227325790 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 6.725436236 7.371425889 190149658 grpE Stress Heat shock Actinobacillus pleuropneumoniae serovar 7 str. AP76 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus pleuropneumoniae; 7.264563881 7.455884153 119949693 PobA Organic Remediation Aromatics Aromatic carboxylic acid Arthrobacter aurescens TC1 6.685002589 7.444843321 118436926 pimF Organic Remediation Aromatics Aromatic carboxylic acid Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 7.773931854 7.115741857 7.330862814 7.664606863 22775771 clpC Stress Protein stress Oceanobacillus iheyensis HTE831 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Oceanobacillus;species:Oceanobacillus iheyensis; 6.626368309 7.396676569 7.002071289 7.477974344 9957195 nmoA Organic Remediation Aromatics Nitoaromatics EDTA-degrading bacterium BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 7.386964706 7.62088973 7.643989614 7.497350661 7.721126432 86748186 proO Organic Remediation Aromatics Other aromatics Rhodopseudomonas palustris HaA2 7.269640631 6.829973532 7.674893294 40742609 endochitinase Carbon cycling Carbon degradation Chitin Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.260775017 7.127675221 145231268 BpH Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.556496189 7.707040819 7.987684828 118122608 rubisco Carbon cycling Carbon fixation uncultured beta proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 7.6986668 8.147019279 7.398107902 7.592500605 189485008 gyrB other category gyrB uncultured Termite group 1 bacterium phylotype Rs-D17 superkingdom:Bacteria;phylum:Elusimicrobia;species:uncultured Termite group 1 bacterium; 7.0974908 7.296435884 124515928 mercury_resistant_gene Bioleaching Metal Resistance Leptospirillum sp. Group II UBA 7.173132175 7.575529246 29608371 ppx Phosphorus Phosphorus utilization Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 7.458952975 7.069396262 7.999365602 78196818 amyA Carbon cycling Carbon degradation Starch Synechococcus sp. CC9605 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.076693428 7.310518204 167076669 nmoA Organic Remediation Aromatics Nitoaromatics Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.339001248 6.839252767 7.658144927 182678300 pcc Carbon cycling Carbon fixation Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 7.675837957 7.980734154 7.560318943 7.619049676 7.52083804 38702 fnr Stress Oxygen stress Azorhizobium caulinodans 7.975546851 7.753178513 95111341 arsB Metal Resistance Arsenic Pseudomonas superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae; 7.088722364 7.30913297 218762227 CopA Metal Resistance Copper Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 7.100146717 6.722440089 7.540619954 86356874 hly virulence hemolysin Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 6.937186886 7.67768594 114335906 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Shewanella frigidimarina NCIMB 400 7.422951238 7.340204398 8.083226179 8.359450518 8.061704583 241461873 hly virulence hemolysin Allochromatium vinosum DSM 180 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 7.624244355 7.222554178 257373007 iro virulence Halomicrobium mukohataei DSM 12286 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halomicrobium;species:Halomicrobium mukohataei; 7.186069619 7.28000397 119670367 TehB Metal Resistance Tellurium Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 6.929281368 6.619643116 119949175 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 7.085194688 7.617708305 7.44962811 7.115013113 7.54244568 56478172 pstA Stress Phosphate limitation Aromatoleum aromaticum EbN1 7.213447639 7.584173966 1905991 mhpC Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus globerulus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 6.604385048 7.468529804 86566918 amyA Carbon cycling Carbon degradation Starch Frankia sp. CcI3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 7.506438838 7.136901799 7.32510621 42547938 ZntA Metal Resistance Zinc Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 7.183077795 7.28553344 7.718292754 78167254 ahpC Stress Oxygen stress Chlorobium luteolum DSM 273 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon luteolum; 7.527175078 7.44560473 7.684508716 7.697489594 8.117813107 99038918 ArsC Metal Resistance Arsenic Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 6.940531148 7.630896015 262410413 helicase_family_4 Bacteria phage REPLICATION Klebsiella phage KP32 7.420163622 7.505090717 7.534131658 7.210583163 7.292085987 119720740 catB Organic Remediation Aromatics BTEX and related aromatics Thermofilum pendens Hrk 5 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermofilaceae;genus:Thermofilum;species:Thermofilum pendens; 7.00418519 7.298936857 17744100 nmoA Organic Remediation Aromatics Nitoaromatics Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 6.834133552 7.620574148 55791746 catechol_B Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 6.958726164 6.544770659 7.310748618 7.008764817 7.766708991 90324307 ppx Phosphorus Phosphorus utilization Photobacterium profundum 3TCK superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 7.109748466 7.77137761 7.107961295 6.795109783 7.240906156 154292386 nagG Organic Remediation Aromatics Aromatic carboxylic acid Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 7.114620662 7.378267034 7.449524129 7.198152411 149782945 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.023439707 6.654791212 226319354 sigma_24 Stress Sigma factors Deinococcus deserti VCD115 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 7.013535168 6.830899578 237685890 xylanase Carbon cycling Carbon degradation Hemicellulose Teredinibacter turnerae T7901 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 6.991290683 7.510064075 7.562896871 7.097027429 7.016536125 7.49107868 154353320 CopA Metal Resistance Copper Bacillus amyloliquefaciens FZB42 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 6.93533498 6.969640707 7.157718843 7.046917026 7.032595009 238940461 phoA Stress Phosphate limitation Zygosaccharomyces rouxii superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Zygosaccharomyces; 7.865342697 7.862864386 120556724 chnB Organic Remediation Other Hydrocarbons Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 7.463796583 7.274233474 7.56617688 7.363336884 7.443324457 163760436 BchY other category chlorophyllide reductase Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 7.109600872 7.760014539 7.49077328 7.036269503 7.573740811 196114016 phoB Stress Phosphate limitation Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 6.955175523 7.646197973 7.783608139 7.157645875 7.270584527 86137104 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.226304416 7.528812387 7.608320583 7.547500616 7.548777242 91202875 groEL Stress Heat shock Candidatus Kuenenia stuttgartiensis superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;genus:Candidatus Kuenenia; 7.543657704 7.644368842 7.680027509 7.218671168 7.623960985 56697957 sigma_24 Stress Sigma factors Ruegeria pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 7.569415117 7.549893723 169849586 pnbA Organic Remediation Aromatics Nitoaromatics Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 7.657759368 8.004831512 7.700560433 7.928155004 7.502624605 7.83591692 158309750 bclA Organic Remediation Aromatics Aromatic carboxylic acid Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;genus:Acaryochloris;species:Acaryochloris marina; 7.131174632 7.377912055 221633685 obgE Stress Radiation stress Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 7.290156143 6.838786038 225200260 amyA Carbon cycling Carbon degradation Starch Sclerotinia sclerotiorum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia; 7.054789951 6.772081242 7.299931577 118424533 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.463659694 7.461016124 211905479 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.30288342 7.322200667 7.635813896 7.183430713 46519933 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.575208667 7.291053901 73535148 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.45575258 8.003111593 7.833386612 8.112580192 7.711941765 7.698176395 37521566 ZntA Metal Resistance Zinc Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 7.420093307 7.283878716 7.336986021 7.454867467 7.499850123 74055656 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 6.999383632 6.8918218 145225407 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 7.136232083 7.794919344 7.918706347 7.730424079 7.806902988 7.844224772 73670270 gyrB other category gyrB Methanosarcina barkeri str. fusaro superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina barkeri; 7.018709551 7.163379921 68535487 cspB Stress Cold shock Corynebacterium jeikeium K411 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 7.159852036 7.403753276 7.774408092 7.46383732 7.335255074 7.752898444 3157680 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 6.952484858 7.253826331 7.40085487 7.272707975 7.438498542 70991507 pcpE Organic Remediation Herbicides related compound Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 7.171671075 7.235002666 196211825 sigma_70 Stress Sigma factors Geobacillus sp. G11MC16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.035837815 7.602858231 160917430 narG Nitrogen Denitrification uncultured bacterium 6.574098859 7.617512342 148244667 gyrB other category gyrB Candidatus Vesicomyosocius okutanii HA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:Calyptogena okutanii thioautotrophic gill symbiont; 6.70440783 7.312849562 126732235 sigma_24 Stress Sigma factors Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 7.076719227 7.089052187 7.083175104 7.323929743 77378657 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 6.78392681 6.991619989 281329997 gyrB other category gyrB Burkholderia sp. CCGE1001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 6.950591828 6.955564956 88809516 Al Metal Resistance Aluminum Synechococcus sp. WH 7805 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.11311689 7.570733966 22796202 nirS Nitrogen Denitrification gamma proteobacterium C10-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.289060743 8.063198951 7.254565727 7.040584994 7.005419064 251789463 narH Stress Oxygen limitation Dickeya zeae Ech1591 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 7.20722324 7.277483036 7.575826062 7.516898981 7.231022316 254250078 iro virulence Burkholderia cenocepacia PC184 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 7.414915601 7.348975945 15790271 atzA Organic Remediation Herbicides related compound Halobacterium sp. NRC-1 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halobacterium;species:Halobacterium salinarum; 7.090692596 7.763370642 50840817 aclB Carbon cycling Carbon fixation Propionibacterium acnes KPA171202 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 7.687124431 7.73768529 7.596444788 262377723 katE Stress Oxygen stress Acinetobacter lwoffii SH145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter lwoffii; 6.722036335 7.254632763 217504942 nhh Organic Remediation Aromatics Nitoaromatics Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 7.245505158 7.665892721 7.651346764 7.38248137 7.577013175 7.673426599 115377085 ppk Phosphorus Phosphorus utilization Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 7.53169517 7.277187571 7.464568117 7.403244722 111020800 CDH Carbon cycling Carbon degradation Cellulose Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7.358080077 7.297619937 7.201535769 7.232171056 7.202231706 192284153 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.447174828 7.390727551 134294063 mhpA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 7.478406564 7.483007428 7.693582458 229785574 phoA Stress Phosphate limitation Bifidobacterium angulatum DSM 20098 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium angulatum; 7.17330659 7.406010793 7.787430614 7.515801112 7.448702282 88932674 gyrB other category gyrB Dehalococcoides sp. BAV1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.292365477 6.840245876 7.908353535 7.25574419 7.173576901 7.050893019 223693837 fnr Stress Oxygen stress Desulfobacterium autotrophicum HRM2 6.889259766 6.722312246 70997782 pectinase Carbon cycling Carbon degradation Pectin Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 7.245466498 7.26026683 7.435495247 7.670333444 227967602 pstB Stress Phosphate limitation Tsukamurella paurometabola DSM 20162 7.444042107 6.909043087 8.076160218 7.287871177 7.721901729 262403211 pstB Stress Phosphate limitation Vibrio sp. RC586 6.85750494 7.086147313 255060850 cytochrome Energy process Energy process Geobacter sp. M18 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 6.934312887 6.79001594 241894197 pstB Stress Phosphate limitation Sphingobacterium spiritivorum ATCC 33861 7.166350935 7.271528619 7.748105815 156104288 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 6.705679713 7.230085743 146403706 sox Sulphur Sulphur oxidation Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 7.40294835 7.106347963 206602787 sigma_38 Stress Sigma factors Leptospirillum sp. Group II '5-way CG' superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 7.355719522 7.428335257 71145925 pilin virulence pilin Colwellia psychrerythraea 34H superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Colwelliaceae;genus:Colwellia;species:Colwellia psychrerythraea; 6.95307066 7.279490069 71144796 linB Organic Remediation Pesticides related compound Colwellia psychrerythraea 34H superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Colwelliaceae;genus:Colwellia;species:Colwellia psychrerythraea; 7.776780023 8.109334689 46519961 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.106496446 7.504181311 22796244 nirS Nitrogen Denitrification uncultured bacterium pB16 superkingdom:Bacteria; 6.924328419 7.33352969 219952482 CopA Metal Resistance Copper Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 7.223762105 7.382694221 210067248 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 6.825905275 6.831211116 7.075828901 6.995542302 6.921263742 254506258 nplT Carbon cycling Carbon degradation Starch Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 6.833676604 7.411725313 123440660 pimF Organic Remediation Aromatics Aromatic carboxylic acid Yersinia enterocolitica subsp. enterocolitica 8081 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 6.935833607 7.457836169 119953725 helicase_family_4_DnaB_like Bacteria phage REPLICATION Staphylococcus phage CNPH82 order:Caudovirales;family:Siphoviridae; 7.240750055 7.261499165 114337962 sigma_70 Stress Sigma factors Syntrophomonas wolfei subsp. wolfei str. Goettingen 7.201967164 7.526545221 46915948 nosZ Nitrogen Denitrification Photobacterium profundum SS9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 7.320519815 7.465953778 7.727727407 189352219 bphA Organic Remediation Aromatics Polycyclic aromatics Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 7.343929295 7.393024538 194337793 ppx Phosphorus Phosphorus utilization Pelodictyon phaeoclathratiforme BU-1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 7.70186432 7.877165309 7.788215893 7.742274478 8.105895786 227528739 nplT Carbon cycling Carbon degradation Starch Lactobacillus ruminis ATCC 25644 6.836677101 7.194212083 7.278467937 6.98522382 7.492858848 41223049 tftH Organic Remediation Aromatics Chlorinated aromatics Corynebacterium glutamicum ATCC 13032 6.82356743 7.018021721 116743199 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.096197775 7.399222938 7.761063007 7.628175163 8.138544498 91776916 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Methylobacillus flagellatus KT superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 7.287703785 7.651024105 70930928 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.199691316 6.977940901 7.277397168 69298861 ureC Nitrogen Ammonification Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.231699565 7.282806596 34540223 fnr Stress Oxygen stress Porphyromonas gingivalis W83 6.750402145 7.2658431 54306275 arhA Organic Remediation Aromatics Heterocyclic aromatics Pseudomonas sp. LCY14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.04103739 6.789149668 118747579 xylC Organic Remediation Aromatics BTEX and related aromatics Marinomonas sp. MWYL1 7.415410548 7.716075381 7.801201494 229475883 grpE Stress Heat shock Planctomyces limnophilus DSM 3776 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces limnophilus; 7.234772931 7.77240969 7.714556533 7.33748743 7.534233962 156935543 atzC Organic Remediation Herbicides related compound Enterobacter sakazakii ATCC BAA-894 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 7.009660967 7.811148716 89893271 ahpF Stress Oxygen stress Desulfitobacterium hafniense Y51 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 7.468406965 7.660400416 7.485605616 7.48282589 7.194577805 114845759 trzN Organic Remediation Herbicides related compound Desulfovibrio vulgaris subsp. vulgaris DP4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 7.138484668 7.05646519 254488976 glnA Stress Nitrogen limitation Roseobacter sp. GAI101 7.221854008 7.614482901 219667090 katE Stress Oxygen stress Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 8.015435341 7.374514258 7.862712067 7.963354796 195931879 Catechol Organic Remediation Aromatics Other aromatics Gordonia rhizosphera superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 7.276059564 6.881165209 7.369163679 7.699911161 7.825581746 227347649 gdh Nitrogen Ammonification Corynebacterium pseudogenitalium ATCC 33035 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium pseudogenitalium; 7.453049829 7.383769615 8.227108808 7.604012434 7.570163868 7.432417986 13898626 CadA Metal Resistance Cadmium Pseudomonas putida 7.288905344 7.714659572 109455009 Mex Antibiotic resistance transporter Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 7.249922388 7.07624227 44921174 nifH Nitrogen Nitrogen fixation Methanococcus maripaludis S2 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanococcaceae;genus:Methanococcus;species:Methanococcus maripaludis; 6.759191264 7.404007665 111056210 chnB Organic Remediation Other Hydrocarbons Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 6.878203289 6.669703941 215499355 Tet Antibiotic resistance other Ixodes scapularis superkingdom:Eukaryota;kingdom:Metazoa;phylum:Arthropoda;class:Arachnida;order:Ixodida;family:Ixodidae;genus:Ixodes; 7.672396413 8.110166195 8.271212478 8.324765194 8.132850256 46389805 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7.16579164 7.626532599 7.075157394 7.196419884 169630411 nagG Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium abscessus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 6.838217588 6.81237828 7.698460276 268549293 amoA Nitrogen Nitrification superkingdom:Archaea; 7.0061062 7.280350552 7.461696519 7.181816288 221070027 ureC Nitrogen Ammonification Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.20934954 7.712286595 7.47347215 7.573489613 7.292168116 7.293597879 238614149 phytase Phosphorus Phosphorus utilization Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 6.947272568 7.474806504 77740782 ArsC Metal Resistance Arsenic Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.246902142 7.001349138 229325463 hly virulence hemolysin Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 6.79981183 7.29309261 146157162 ahpC Stress Oxygen stress Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 6.833815053 7.38968451 28558906 nreB Metal Resistance Nickel Ruegeria sp. PR1b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.579577578 7.015770128 8.081109619 42523159 pstC Stress Phosphate limitation Bdellovibrio bacteriovorus HD100 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 7.594926684 7.872986792 8.130184574 117925212 atzA Organic Remediation Herbicides related compound Magnetococcus sp. MC-1 superkingdom:Bacteria;phylum:Proteobacteria;genus:Magnetococcus; 7.125496027 6.893156763 7.869622907 7.122118968 6.966452198 7.569702801 119671547 exaA Organic Remediation Chlorinated solvents Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 7.249260408 7.229473527 7.425875949 7.098817272 146410659 CadA Metal Resistance Cadmium Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.085542513 7.847654995 6.861185225 7.461598221 196230680 CusA Metal Resistance Copper Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 7.013398602 7.396073796 158141271 fnr Stress Oxygen stress Alkaliphilus oremlandii OhILAs 7.0451989 7.484717472 41406752 pstB Stress Phosphate limitation Mycobacterium avium subsp. paratuberculosis K-10 7.054215391 7.825159117 254556918 obgE Stress Radiation stress Lactobacillus plantarum JDM1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus plantarum; 7.123845843 7.873438582 59480487 TehB Metal Resistance Tellurium Vibrio fischeri ES114 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Vibrio fischeri; 6.602640973 7.356425047 146309671 gyrB other category gyrB Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 7.067532637 7.114351643 7.203266212 7.238590756 11761755 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 7.73115785 7.513944053 7.722632552 7.639725726 198282328 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Acidithiobacillus ferrooxidans ATCC 53993 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 7.408163178 7.577768595 188143135 sigma_38 Stress Sigma factors Helicobacter pylori Shi470 6.864400494 6.915793135 7.268013879 209516861 nmoA Organic Remediation Aromatics Nitoaromatics Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 6.979063163 7.336821164 258404599 pstA Stress Phosphate limitation Desulfohalobium retbaense DSM 5692 7.439366996 7.33304282 8.074271008 119962294 pcc Carbon cycling Carbon fixation Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 7.036256561 7.581131991 7.402040258 7.500886182 218239490 gdh Nitrogen Ammonification Alicyclobacillus acidocaldarius LAA1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 6.961743552 7.016216725 256792332 glnA Stress Nitrogen limitation Slackia heliotrinireducens DSM 20476 7.307968022 7.265493325 7.770935236 119456759 linB Organic Remediation Pesticides related compound Lyngbya sp. PCC 8106 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Lyngbya; 6.990571808 6.821386375 253689907 SMR_antibiotics Antibiotic resistance transporter Pectobacterium carotovorum subsp. carotovorum PC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 7.074039955 7.404935094 112462465 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.114135088 7.015257912 36787566 cah Organic Remediation Others Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 6.733785601 7.353924657 7.07226091 6.662611248 7.340360402 124110942 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 8.232265312 7.233726738 87307862 sigma_24 Stress Sigma factors Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 7.834262041 8.099405625 8.12095537 7.95685502 7.86867297 221635935 ChrA Metal Resistance Chromium Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 7.36577057 7.045376557 170027525 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.216124121 7.43004282 110622510 pstA Stress Phosphate limitation uncultured methanogenic archaeon RC-I 7.195731325 7.332620884 7.860638813 7.259438985 7.235046633 7.413239132 167541210 mcrA Carbon cycling Methane Methane production uncultured bacterium superkingdom:Bacteria; 6.791227791 7.457583899 6.675354825 6.997138365 34102759 glnA Stress Nitrogen limitation Chromobacterium violaceum ATCC 12472 7.401532723 6.799281436 146406274 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 6.864265866 7.265910753 7.787793425 7.295040658 7.171057586 7.365983796 170692224 nitA Organic Remediation Aromatics Other aromatics Burkholderia graminis C4D1M 6.861914503 7.22935655 7.622933747 7.431671291 7.387385406 7.321842644 20516810 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Thermoanaerobacter tengcongensis MB4 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Thermoanaerobacter;species:Thermoanaerobacter tengcongensis; 6.964425149 7.536467809 110818401 chnB Organic Remediation Other Hydrocarbons Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7.420001032 7.415235114 7.282669668 7.379815079 7.440623946 257872727 ara Carbon cycling Carbon degradation Hemicellulose Enterococcus casseliflavus EC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus casseliflavus; 6.630027145 7.137902009 116747679 hly virulence hemolysin Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 7.580624084 7.430493537 7.514264319 7.751613455 7.22181337 7.50988953 116625894 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 6.871595974 7.394621637 119226146 gyrB other category gyrB Mycobacterium diernhoferi superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7.425865546 7.832209414 7.782782375 7.612956069 12539418 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. NK8 6.882722939 7.509396789 7.392216846 7.864034268 7.217546531 21220895 ara Carbon cycling Carbon degradation Hemicellulose Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8.028047194 7.927668436 7.887244096 7.668962321 29160305 exoglucanase Carbon cycling Carbon degradation Cellulose Chaetomium thermophilum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium; 8.066934178 7.259279525 8.010753141 7.622960359 7.448654858 116013342 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.004510819 7.398946009 7.038351465 7.425232599 238897333 ahpC Stress Oxygen stress Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Candidatus Hamiltonella;species:Candidatus Hamiltonella defensa; 7.186370717 7.536422697 7.606183656 7.362094419 7.57546379 116063135 alkK Organic Remediation Others Aeropyrum pernix K1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Aeropyrum;species:Aeropyrum pernix; 7.371676032 7.671780037 7.592376426 7.496644475 83637583 pilin virulence pilin Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 7.342497878 7.432491052 7.929056453 7.347794321 7.60703487 116610262 glnA Stress Nitrogen limitation Arthrobacter sp. FB24 7.096541795 7.229669268 117999875 phtA Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.184818017 6.909792204 7.121416766 6.904292488 145215939 CadA Metal Resistance Cadmium Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 7.064101526 7.189090158 114320108 gyrB other category gyrB Alkalilimnicola ehrlichei MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 7.078319586 7.777230373 7.649605643 7.513872996 221315660 proV Stress Osmotic stress Bacillus subtilis subsp. subtilis str. NCIB 3610 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 7.423436645 7.002861513 110224956 gyrB other category gyrB Streptococcus acidominimus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 7.533099781 7.299236641 7.106790207 7.058371588 7.368902939 215458060 ara_fungi Carbon cycling Carbon degradation Hemicellulose Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 7.648160227 8.086663382 7.656740707 8.48076687 190687160 ahpF Stress Oxygen stress Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 7.123423736 6.953439881 7.119812839 7.223030955 169001949 Al Metal Resistance Aluminum Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 6.882259805 6.541343195 90424980 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.433325367 7.77278005 7.669842976 7.1784438 7.751049754 187722482 pstB Stress Phosphate limitation Clostridium botulinum B str. Eklund 17B 6.897548413 7.35411841 190572256 ArsC Metal Resistance Arsenic Stenotrophomonas maltophilia K279a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 7.277883825 7.234501069 146297724 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Caldicellulosiruptor saccharolyticus DSM 8903 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Caldicellulosiruptor;species:Caldicellulosiruptor saccharolyticus; 6.949249874 6.815152464 7.370008529 218518045 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Acidithiobacillus ferrooxidans ATCC 23270 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 7.473133765 7.378836091 157781409 groEL Stress Heat shock Enterococcus avium superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus; 7.254349804 7.908452248 7.857769436 8.204480445 22855128 helicase_family_4_DnaB_like Bacteria phage REPLICATION Bacillus phage SPP1 order:Caudovirales;family:Siphoviridae;genus:Lambda-like viruses; 7.535298203 7.012395989 88856664 ZntA Metal Resistance Zinc marine actinobacterium PHSC20C1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 7.507807884 7.782872364 7.511767271 7.723322492 145577387 sigma_32 Stress Sigma factors Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 7.385974325 7.208205799 7.870081887 127513795 pcc Carbon cycling Carbon fixation Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 6.985550755 7.332332328 242792155 MFS_antibiotic Antibiotic resistance transporter Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 6.670700019 7.540803598 118568263 cspB Stress Cold shock Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 7.346494881 7.713217247 7.772036889 7.658198341 8.079953838 21322850 ureC Nitrogen Ammonification Corynebacterium glutamicum ATCC 13032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 7.104532678 7.012062563 257449200 obgE Stress Radiation stress Enhydrobacter aerosaccus SK60 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Enhydrobacter;species:Enhydrobacter aerosaccus; 6.835998171 7.150834971 160428709 ChrA Metal Resistance Chromium Clostridium phytofermentans ISDg superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium phytofermentans; 6.477835242 7.591084867 163262598 ArsC Metal Resistance Arsenic Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 7.334437853 7.48524509 134095787 pilin virulence pilin Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 7.29266253 7.451466212 221536228 inv virulence invasion Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 7.503496887 7.166788431 7.856274231 7.742203083 7.261249169 7.795181189 256420066 sigma_24 Stress Sigma factors Chitinophaga pinensis DSM 2588 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 6.948504496 6.610724783 256675909 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Streptomyces sp. SPB78 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7.67937139 8.325704779 7.802517164 8.016910985 7.796897006 7.869509848 121514198 nrfA Nitrogen Dissimilatory N reduction Anaeromyxobacter sp. Fw109-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 7.862715383 8.064240965 7.867751737 7.923427037 7.758068198 7.963992547 182412691 amyA Carbon cycling Carbon degradation Starch Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 7.364479976 7.262436552 20905698 mcrA Carbon cycling Methane Methane production Methanosarcina mazei Go1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina mazei; 6.920644416 7.708114562 7.629749326 7.037462519 146350520 exoglucanase Carbon cycling Carbon degradation Cellulose Pleurotus sp. 'Florida' superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pleurotaceae;genus:Pleurotus;species:Pleurotus pulmonarius; 7.341994912 7.51593111 109452467 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6.850265358 7.499205957 7.371624204 7.079911417 7.208520219 91681814 bclA Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.832100073 8.096337083 255326319 obgE Stress Radiation stress Rothia mucilaginosa ATCC 25296 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Rothia;species:Rothia mucilaginosa; 7.771859848 7.263149323 7.986055951 7.41838227 7.34479461 7.92515243 22778290 ChrA Metal Resistance Chromium Oceanobacillus iheyensis HTE831 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Oceanobacillus;species:Oceanobacillus iheyensis; 7.518291077 6.997657162 95135438 proV Stress Osmotic stress Desulfuromonas acetoxidans DSM 684 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Desulfuromonadaceae;genus:Desulfuromonas;species:Desulfuromonas acetoxidans; 7.011163559 7.44907683 114762066 CopA Metal Resistance Copper Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7.167855974 7.969316481 58425534 ara Carbon cycling Carbon degradation Hemicellulose Xanthomonas oryzae pv. oryzae KACC10331 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 7.628764893 7.290090278 7.471785715 157369023 pilin virulence pilin Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 7.3744717 6.930983494 7.157966476 7.711115545 91698130 ahpF Stress Oxygen stress Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 7.371164832 7.697822963 62120313 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 7.723841529 7.271001324 238757969 cydA Stress Oxygen limitation Yersinia aldovae ATCC 35236 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia aldovae; 7.059572937 7.654261298 20517449 ppx Phosphorus Phosphorus utilization Thermoanaerobacter tengcongensis MB4 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Thermoanaerobacter;species:Thermoanaerobacter tengcongensis; 7.272297504 7.42858825 3046310 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris 7.393610413 7.455633295 7.644536863 224018458 sigma_24 Stress Sigma factors Bacteroides coprophilus DSM 18228 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides coprophilus; 6.820466518 7.491726136 225870420 pstB Stress Phosphate limitation Streptococcus equi subsp. equi 4047 7.286887334 7.616595563 7.43163605 7.382157976 194289858 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 7.514791086 7.323436612 7.719719937 40593 nifH Nitrogen Nitrogen fixation Clostridium pasteurianum superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 6.836338754 6.932517676 169624056 glucoamylase Carbon cycling Carbon degradation Starch Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 7.187190519 7.513602784 7.159591473 7.051138709 7.61705324 167950597 hly virulence hemolysin Endoriftia persephone 'Hot96_1+Hot96_2' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Endoriftia;species:Endoriftia persephone; 6.918785587 7.649534033 75701533 obgE Stress Radiation stress Anabaena variabilis ATCC 29413 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena variabilis; 6.76708251 6.616926246 212637614 pimF Organic Remediation Aromatics Aromatic carboxylic acid Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 7.083037083 7.63805969 71736439 xylA Carbon cycling Carbon degradation Hemicellulose Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 7.561983159 8.128072519 9651051 bphF1 Organic Remediation Aromatics Polycyclic aromatics Pseudomonas sp. 6.947819327 6.991017209 7.273842809 7.095234733 114770854 PhaB Organic Remediation Aromatics Aromatic carboxylic acid alpha proteobacterium HTCC2255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 6.960543881 6.881057522 57238575 ArsC Metal Resistance Arsenic Campylobacter jejuni RM1221 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter jejuni; 7.09230077 6.971504666 119948332 amyA Carbon cycling Carbon degradation Starch Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 7.874238729 7.723765116 89091895 mer Metal Resistance Mercury Oceanospirillum sp. MED92 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Neptuniibacter; 7.184995989 7.545763174 110621500 CopA Metal Resistance Copper uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 7.133649328 7.355005849 227549680 fnr Stress Oxygen stress Corynebacterium lipophiloflavum DSM 44291 7.528773029 7.659061277 7.476849908 7.9280322 54307643 sigma_70 Stress Sigma factors Photobacterium profundum SS9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 7.909406967 7.431636164 7.673993445 7.602996277 7.806606526 126174562 glucoamylase Carbon cycling Carbon degradation Starch Shewanella baltica OS155 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 7.539537273 8.063519867 7.731971991 7.174957694 7.628407493 251754098 iro virulence Pectobacterium carotovorum subsp. carotovorum PC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 6.669050365 6.766679525 51469810 nitA Organic Remediation Aromatics Other aromatics Alcaligenes faecalis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes; 7.830400125 7.216967449 7.883506883 126715965 AceB Carbon cycling Carbon degradation others Roseobacter sp. CCS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 6.980273346 7.171385764 7.64908295 88702657 nosZ Nitrogen Denitrification uncultured soil bacterium superkingdom:Bacteria; 7.344057722 7.828290114 7.618466196 7.893825837 7.764168137 148474752 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 6.772634761 6.900278306 91798359 AceB Carbon cycling Carbon degradation others Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 7.589765651 7.3029108 154351567 catB Organic Remediation Aromatics BTEX and related aromatics Bacillus amyloliquefaciens FZB42 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 7.912056835 7.402342205 251795971 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.114423163 7.305732743 7.490120846 146348378 B_lactamase_A Antibiotic resistance Beta-lactamases Clostridium kluyveri DSM 555 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium kluyveri; 6.689287029 7.380412669 125863433 pheA Organic Remediation Aromatics Other aromatics Comamonas testosteroni superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 6.825071841 7.047095777 7.561061049 259030496 fnr Stress Oxygen stress Mesorhizobium opportunistum WSM2075 7.093036351 7.205447878 255020517 glnA Stress Nitrogen limitation Acidithiobacillus caldus ATCC 51756 7.501334382 8.070717555 7.862334439 7.496264113 50951895 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Leifsonia xyli subsp. xyli str. CTCB07 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Leifsonia;species:Leifsonia xyli; 7.423479775 7.447868551 7.543514769 7.327102461 7.656498357 116070855 sigma_70 Stress Sigma factors Synechococcus sp. BL107 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.286786592 7.663212732 7.462811975 7.131445468 139003341 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.067178489 7.307415427 256560494 pstA Stress Phosphate limitation Brachybacterium faecium DSM 4810 7.367972384 7.440853421 7.620992687 7.509738145 144982989 pilin virulence pilin Haemophilus influenzae R3021 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus influenzae; 6.861261982 6.905717809 7.320561764 119773158 gyrB other category gyrB Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 7.136533848 7.30649655 7.823697327 94731693 nrfA Nitrogen Dissimilatory N reduction Lawsonia intracellularis PHE/MN1-00 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Lawsonia;species:Lawsonia intracellularis; 6.941701408 7.604564745 145635346 gyrB other category gyrB Haemophilus influenzae PittAA 7.313183503 7.193096756 188989868 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Xanthomonas campestris pv. campestris str. B100 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 7.187053924 7.258825282 110632256 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.406179199 7.204854581 150376384 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 7.187347583 7.598691381 7.906939785 7.884460859 115399024 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 6.686800831 7.227698636 118424317 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.03004619 7.160980581 7.459739876 7.269695844 7.384930467 119954994 TerC Metal Resistance Tellurium Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 7.441704629 7.265476419 262191504 pilin virulence pilin Vibrio cholerae CT 5369-93 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 7.119134635 7.370230305 7.652048167 7.38151388 256371060 glnA Stress Nitrogen limitation Acidimicrobium ferrooxidans DSM 10331 7.059021912 7.557421694 91799470 glucoamylase Carbon cycling Carbon degradation Starch Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 7.298897172 7.001569527 7.568057702 227845044 SMR_antibiotics Antibiotic resistance transporter Halogeometricum borinquense DSM 11551 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halogeometricum;species:Halogeometricum borinquense; 6.941002802 7.217127353 7.339101297 7.286828324 88702209 Arylest Organic Remediation Aromatics Other aromatics Congregibacter litoralis KT71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 7.419129823 7.190211647 7.21081809 7.493784094 83574852 pstC Stress Phosphate limitation Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 7.47053743 7.509034224 223939686 amyA Carbon cycling Carbon degradation Starch bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 6.617382097 7.339048376 6.821495541 6.874483434 83955301 pcaG Organic Remediation Aromatics Other aromatics Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 7.984286312 7.82797515 86143486 nmoA Organic Remediation Aromatics Nitoaromatics Flavobacterium sp. MED217 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Leeuwenhoekiella;species:Leeuwenhoekiella blandensis; 7.687217946 8.449038306 8.174811007 7.849327922 7.924120892 94499906 pstB Stress Phosphate limitation Oceanobacter sp. RED65 7.281748144 7.318783228 8978305 bphC Organic Remediation Aromatics Polycyclic aromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7.315979191 7.9163197 7.488488095 7.98202059 209504243 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 6.93707291 7.709084051 7.391857196 7.363386268 7.346014193 207090213 pstB Stress Phosphate limitation Nitrosococcus oceani AFC27 6.837907725 7.374030912 229213768 obgE Stress Radiation stress Dethiosulfovibrio peptidovorans DSM 11002 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Dethiosulfovibrio;species:Dethiosulfovibrio peptidovorans; 7.86164443 8.253039144 8.136846607 7.899645685 8.279569197 238795924 iuc virulence aerobactin Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 7.38897039 7.18670792 7.697270667 7.344507084 260911782 sigma_24 Stress Sigma factors Prevotella sp. oral taxon 472 str. F0295 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella sp. oral taxon 472; 7.113993429 7.23701889 7.431847686 7.570353206 161385023 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 7.926568884 8.107709865 7.988244711 7.950874629 8.063388557 153011922 CadA Metal Resistance Cadmium Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 7.119412401 7.175983664 7.64412262 7.146999644 7.101400547 193225272 pnbA Organic Remediation Aromatics Nitoaromatics Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 7.770606945 7.361043037 152023157 srt virulence surface protein Bacillus cytotoxicus NVH 391-98 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cytotoxicus; 6.55370182 7.333299792 163644628 PceA Organic Remediation Others Dehalococcoides sp. enrichment culture clone KS5(KSRdA06) 7.298029546 7.30541836 7.381346749 7.334474521 227236615 srt virulence surface protein Anaerococcus lactolyticus ATCC 51172 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Anaerococcus;species:Anaerococcus lactolyticus; 6.998780381 6.861519225 7.545586974 94500786 pimF Organic Remediation Aromatics Aromatic carboxylic acid Oceanobacter sp. RED65 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Bermanella; 7.509788262 7.59190859 7.75355861 7.569096233 222880153 obgE Stress Radiation stress Campylobacter rectus RM3267 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter rectus; 7.270168666 7.279305921 7.537764157 260593410 oxyR Stress Oxygen stress Prevotella veroralis F0319 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella veroralis; 7.125359689 7.520222948 19887267 dsrA Sulphur sulfite reductase Methanopyrus kandleri AV19 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanopyri;order:Methanopyrales;family:Methanopyraceae;genus:Methanopyrus;species:Methanopyrus kandleri; 7.204964915 7.440517231 7.571007439 7.406485565 7.193899033 156720418 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.093471478 7.12558835 254421146 glucoamylase Carbon cycling Carbon degradation Starch Brevundimonas sp. BAL3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas; 8.215589439 7.987286613 8.386651669 7.679532019 7.520122813 8.029938575 56479025 nosZ Nitrogen Denitrification Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 7.295759177 6.711622313 47420448 endochitinase Carbon cycling Carbon degradation Chitin Streptomyces sp. MG3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7.307065854 7.489055493 7.78047526 7.657814765 7.84105545 256773627 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Streptomyces hygroscopicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces hygroscopicus; 7.147209531 6.840340832 153807857 sigma_24 Stress Sigma factors Bacteroides caccae ATCC 43185 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides caccae; 7.182872076 7.743956147 7.515336264 7.169071826 193086211 sox Sulphur Sulphur oxidation Chlorobaculum parvum NCIB 8327 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum parvum; 8.250064449 8.018879486 8.112894399 7.864209574 86139114 CopA Metal Resistance Copper Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.636798827 7.37295996 90020977 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 6.855588513 6.731882736 7.741211266 146396856 ChrA Metal Resistance Chromium Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 7.470172129 7.982439229 171989881 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Exiguobacterium sibiricum 255-15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 7.586102222 8.061603944 258623217 MATE_antibiotic Antibiotic resistance transporter Vibrio mimicus VM573 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 6.806688346 7.518610064 222529113 obgE Stress Radiation stress Anaerocellum thermophilum DSM 6725 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Anaerocellum;species:Anaerocellum thermophilum; 6.774163452 7.290855854 222436910 glnA Stress Nitrogen limitation Labrenzia alexandrii DFL-11 7.137890689 7.355479592 7.539215344 7.42216796 237799999 type_III_secretion virulence secretion Pseudomonas syringae pv. oryzae str. 1_6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 7.073235335 7.563357434 7.563051147 7.518716533 166482 phytase Phosphorus Phosphorus utilization superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 7.18002163 7.006500971 157404593 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 6.756765875 7.279816874 228306961 ppk Phosphorus Phosphorus utilization Porphyromonas uenonis 60-3 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas;species:Porphyromonas uenonis; 7.137804582 7.713159552 170140958 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 7.877767569 7.777882878 7.763131725 7.980448061 8.32926928 152978333 katE Stress Oxygen stress Actinobacillus succinogenes 130Z superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus succinogenes; 7.367151293 7.248544038 7.181939032 7.328498728 7.321910203 26278688 narG Nitrogen Denitrification uncultured bacterium 7.682305986 7.115964677 7.458944918 149909741 CadA Metal Resistance Cadmium Moritella sp. PE36 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Moritellaceae;genus:Moritella; 7.530886594 7.489054423 7.614861314 83316792 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 6.971771082 7.302291097 149118731 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 7.482019739 7.764350638 7.848146789 7.406977449 7.331962689 207086730 cydB Stress Oxygen limitation beta proteobacterium KB13 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 7.400065561 7.441165835 241321301 sigma_32 Stress Sigma factors Neisseria flavescens SK114 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria flavescens; 6.931312093 7.441099715 188028717 alkK Organic Remediation Others Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 7.528680685 7.603424454 4220433 nagI Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia sp. U2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 6.820204488 7.663016737 6.959038272 7.381258856 95109363 CMCI Organic Remediation Aromatics Other aromatics Pseudomonas superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae; 7.108057248 7.303533255 224611177 sigma_24 Stress Sigma factors Thioalkalivibrio sp. K90mix superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 6.899635301 7.349885777 119369914 gyrB other category gyrB uncultured bacterium superkingdom:Bacteria; 7.229366595 7.71744873 78696499 ppx Phosphorus Phosphorus utilization Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.587805743 7.725864053 7.778009678 169759744 cytochrome Energy process Energy process Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.654394405 7.317225501 83025976 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 6.928423658 6.743359985 29610703 iro virulence Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 7.027004952 7.316121264 71906025 pimF Organic Remediation Aromatics Aromatic carboxylic acid Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 7.429597078 6.964737075 157804806 APS_AprB Sulphur adenylylsulfate reductase Halochromatium salexigens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Halochromatium; 6.797272422 7.290945342 163841254 alkK Organic Remediation Others Renibacterium salmoninarum ATCC 33209 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Renibacterium;species:Renibacterium salmoninarum; 6.686091024 6.962154547 154083456 amyA Carbon cycling Carbon degradation Starch Bifidobacterium adolescentis L2-32 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium adolescentis; 7.814426347 7.661584447 241778133 rubisco Carbon cycling Carbon fixation Allochromatium vinosum DSM 180 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 7.43702918 8.189495934 7.935633875 7.822125878 7.980764363 71848335 AceB Carbon cycling Carbon degradation others Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 7.141235463 6.945539126 7.15740331 7.11836272 56179879 Arylest Organic Remediation Aromatics Other aromatics Idiomarina loihiensis L2TR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina loihiensis; 7.229137403 7.076655749 196206399 amyA Carbon cycling Carbon degradation Starch Cyanothece sp. PCC 8802 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 6.746271479 7.243201446 89099630 pulA Carbon cycling Carbon degradation Starch Bacillus sp. NRRL B-14911 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 6.970796495 7.557057455 71736997 silC Metal Resistance Silver Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 7.580905143 7.312106986 7.249075831 6.945308791 50119785 grpE Stress Heat shock Pectobacterium atrosepticum SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 7.413960951 7.598602419 9965435 CopA Metal Resistance Copper Streptococcus mutans superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 6.732647044 7.193885824 151302403 APS_AprA Sulphur adenylylsulfate reductase Desulfotomaculum sp. JD175 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 6.928742045 7.306269222 238696653 pstC Stress Phosphate limitation Yersinia kristensenii ATCC 33638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia kristensenii; 6.946664743 7.496592688 46119485 nagI Organic Remediation Aromatics Aromatic carboxylic acid Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 6.964314523 7.12069679 258524139 sigma_24 Stress Sigma factors Desulfurivibrio alkaliphilus AHT2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfurivibrio;species:Desulfurivibrio alkaliphilus; 7.138435776 7.62977872 7.324296729 7.600310345 166200724 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.021362143 7.168803939 7.521831205 7.459695216 7.31537319 14587420 chnB Organic Remediation Other Hydrocarbons Acinetobacter sp. NCIMB9871 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 6.816135157 7.387472703 257464841 nrfA Nitrogen Dissimilatory N reduction Actinobacillus minor 202 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus minor; 7.306181063 7.099736441 7.448181183 7.358228463 7.984510031 222054167 B_lactamase_C Antibiotic resistance Beta-lactamases Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 7.245492286 7.036497752 219676009 BchY other category chlorophyllide reductase gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.376242568 7.388792958 160933194 CopA Metal Resistance Copper Clostridium leptum DSM 753 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 7.678297949 7.670309801 85777198 sigma_24 Stress Sigma factors Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 7.24053225 6.828262823 7.760369818 34148180 dsrA Sulphur sulfite reductase Desulfotomaculum ruminis superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 6.949379839 6.842332537 7.47615504 7.328133401 126715848 glnA Stress Nitrogen limitation Roseobacter sp. CCS2 6.961519988 7.174640821 167819753 narH Stress Oxygen limitation Burkholderia pseudomallei 91 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 6.831076597 7.534548323 114341349 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 7.272522976 7.672088124 7.630356832 7.558542464 258527491 pstA Stress Phosphate limitation Dickeya dadantii Ech586 7.24754528 7.596700271 229738558 cda Carbon cycling Carbon degradation Starch Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 7.08371139 7.964953478 7.820603301 7.900017004 90408994 sigma_24 Stress Sigma factors Psychromonas sp. CNPT3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas; 7.85245257 8.150832823 7.80592909 8.28217809 89053636 pcc Carbon cycling Carbon fixation Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 7.601765663 7.235514394 7.420417947 7.273209931 7.441466497 149359187 tfdA Organic Remediation Aromatics Chlorinated aromatics Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 7.64721655 8.247627183 167665408 pcc Carbon cycling Carbon fixation Anaerotruncus colihominis DSM 17241 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Anaerotruncus;species:Anaerotruncus colihominis; 7.301885305 7.395202314 7.669464761 7.841556152 7.814227743 270343990 type_III_secretion virulence secretion Dickeya dadantii Ech586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 7.21957676 7.408043064 126658855 TerD Metal Resistance Tellurium Cyanothece sp. CCY0110 7.784742863 8.175948477 7.296365455 8.113451199 8.178649366 8.268892853 91186102 ppx Phosphorus Phosphorus utilization Psychroflexus torquis ATCC 700755 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Psychroflexus;species:Psychroflexus torquis; 7.782214919 8.771484178 8.250962998 8.448859602 8.488591641 260907369 glnA Stress Nitrogen limitation Brevibacterium linens BL2 7.362972649 8.022050064 7.554512203 7.644773235 23325374 ara Carbon cycling Carbon degradation Hemicellulose Bifidobacterium longum NCC2705 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 6.847564375 7.436729668 256833155 fnr Stress Oxygen stress Jonesia denitrificans DSM 20603 7.892532486 7.635196059 7.358699141 7.670577349 14994640 nosZ Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.092188114 7.44875665 7.56768317 7.506766122 7.359753547 7.586612453 15158341 linC Organic Remediation Pesticides related compound Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.124769426 7.483785801 7.470288564 222454699 pstB Stress Phosphate limitation Halorubrum lacusprofundi ATCC 49239 6.94084553 7.768627102 7.524425423 7.566888471 7.779225093 84778317 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.310071968 7.463429809 7.440207451 8.002291435 7.407949335 144905892 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6.878872809 7.433457446 126626855 phdCI Organic Remediation Aromatics Polycyclic aromatics Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 7.407500471 7.382711458 8.026448632 170743098 fnr Stress Oxygen stress Methylobacterium sp. 4-46 7.784028757 7.382400346 40746445 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 6.961631211 7.374053786 7.551213649 7.588011801 7.675627805 87281233 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.796029097 7.543796108 239524452 SMR_antibiotics Antibiotic resistance transporter Helicobacter pullorum MIT 98-5489 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter pullorum; 7.033970148 6.755956769 237902805 endochitinase Carbon cycling Carbon degradation Chitin Uncinocarpus reesii 1704 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 6.499815899 6.77143421 7.189690914 7.019562159 6.906277902 192282905 bco Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.201200905 7.617062658 7.708305262 7.49970491 56314061 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 7.020055408 7.428218808 27380916 fnr Stress Oxygen stress Bradyrhizobium japonicum USDA 110 7.328538195 7.294172171 7.641086798 7.449716705 7.53131393 186468967 nahA Organic Remediation Aromatics Polycyclic aromatics Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 6.687217508 7.072975332 283852956 sigma_32 Stress Sigma factors Desulfovibrio sp. FW1012B superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 7.638383199 7.828331905 7.764048063 7.474502456 238935364 phoA Stress Phosphate limitation Lachancea thermotolerans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Lachancea; 6.467229188 7.451031641 113882227 ureC Nitrogen Ammonification Synechococcus sp. CC9311 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 6.945500169 7.66396346 94309225 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 7.380028405 7.694827104 71494532 endochitinase Carbon cycling Carbon degradation Chitin Metarhizium anisopliae var. acridum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Clavicipitaceae;genus:Metarhizium; 6.695458822 7.229986022 77383882 pcc Carbon cycling Carbon fixation Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.844553029 7.945762855 8.181830169 7.739972835 7.653813351 218321394 pilin virulence pilin Vibrio splendidus LGP32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 6.860173388 7.513631127 218219122 CopA Metal Resistance Copper Mitsuokella multacida DSM 20544 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Mitsuokella;species:Mitsuokella multacida; 8.078847924 8.010037919 8.212961062 7.980409998 7.522010848 146276913 glnA Stress Nitrogen limitation Rhodobacter sphaeroides ATCC 17025 7.200021747 7.096067387 119469573 hrcA Stress Heat shock Alteromonadales bacterium TW-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales; 6.814956691 7.373807106 90415650 ureC Nitrogen Ammonification marine gamma proteobacterium HTCC2207 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 6.877086449 7.306241998 237799989 type_III_secretion virulence secretion Pseudomonas syringae pv. oryzae str. 1_6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 6.565203067 7.418764908 217990274 pstB Stress Phosphate limitation Bacteroides pectinophilus ATCC 43243 7.409219338 7.319850625 145627973 nrfA Nitrogen Dissimilatory N reduction Haemophilus influenzae 22.1-21 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus influenzae; 6.631301939 7.590691111 118424305 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.533073304 7.378296227 7.325079155 7.258557754 198262881 gyrB other category gyrB gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.068517405 7.326211894 7.551599381 7.501463564 7.375537983 114776636 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Mariprofundus ferrooxydans PV-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Zetaproteobacteria;order:Mariprofundales;family:Mariprofundaceae;genus:Mariprofundus;species:Mariprofundus ferrooxydans; 7.451698318 7.402937361 7.611915285 7.644642263 161339349 catechol_B Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 7.523600857 8.114042253 8.057217103 8.1376088 7.518649399 237876702 MFS_antibiotic Antibiotic resistance transporter Burkholderia glumae BGR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia glumae; 6.834104386 7.309032974 7.213595566 7.289687794 7.210632478 118469769 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 6.991597999 6.992463731 150397406 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 6.843643564 7.346982354 257479319 sigma_24 Stress Sigma factors Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 7.813681705 7.413711649 7.347855498 7.405141062 188992543 ara Carbon cycling Carbon degradation Hemicellulose Xanthomonas campestris pv. campestris str. B100 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 7.015176438 7.227436147 126737844 pstB Stress Phosphate limitation Roseobacter sp. SK209-2-6 7.512268142 6.879183054 7.302143398 190688649 sigma_70 Stress Sigma factors Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 7.791512716 7.599483486 7.452630536 86567195 TerC Metal Resistance Tellurium Frankia sp. CcI3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 7.352556155 7.74342333 12743891 exoglucanase Carbon cycling Carbon degradation Cellulose Caldicellulosiruptor sp. Tok7B.1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Caldicellulosiruptor; 7.520429871 7.515351254 7.888321723 7.561937819 7.763697214 87289476 sigma_24 Stress Sigma factors Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 7.100682958 6.961599873 95116115 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 6.782325331 6.792269733 261285915 endochitinase Carbon cycling Carbon degradation Chitin Geobacillus sp. Y412MC10 7.517391132 7.866431117 114327315 exaA Organic Remediation Chlorinated solvents Granulibacter bethesdensis CGDNIH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 7.338208825 8.002976679 7.847329299 7.904117094 7.872490779 150836535 atzC Organic Remediation Herbicides related compound Marinomonas sp. MWYL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 7.241714586 7.152807074 162072830 dsrB Sulphur sulfite reductase Thiocystis violacea superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocystis; 7.380692679 7.567933234 7.636242898 7.28264511 7.406162241 225904037 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 6.765778348 7.39264982 7.042949295 7.095175692 78035055 ppx Phosphorus Phosphorus utilization Xanthomonas campestris pv. vesicatoria str. 85-10 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas euvesicatoria; 7.258046583 7.223978346 7.616224941 7.224278206 7.266175062 161391396 vanA Carbon cycling Carbon degradation Others Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 6.701248733 7.368593698 119409512 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 6.950029288 7.630370491 145243378 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8.424271855 7.501505926 237846121 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8.17822685 7.610935041 7.724092474 7.700299075 7.891817348 221194361 glnA Stress Nitrogen limitation Atopobium rimae ATCC 49626 6.741206684 7.552730512 156066085 tfdA Organic Remediation Aromatics Chlorinated aromatics Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 6.498497875 7.314428198 125997654 glnA Stress Nitrogen limitation Shewanella baltica OS155 6.931382707 7.084113421 7.50043276 240863669 fnr Stress Oxygen stress Ralstonia pickettii 12D 7.18766848 7.277076045 87282902 sigma_70 Stress Sigma factors Synechococcus sp. WH 5701 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7.535520828 7.482111939 23492971 PobA Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 7.242860332 7.04797974 77403681 fnr Stress Oxygen stress Streptococcus equi subsp. zooepidemicus 6.826858763 7.183022956 223491255 ureC Nitrogen Ammonification Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 6.96790094 7.327320943 146152855 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 7.352961241 7.398586034 7.36965928 7.59165129 55772603 pilin virulence pilin Thermus thermophilus HB8 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 7.906710146 8.040927573 8.095456556 7.956313178 8.027012979 88860281 arcA Stress Oxygen limitation Pseudoalteromonas tunicata D2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas tunicata; 7.497165645 7.64229641 52843220 nifH Nitrogen Nitrogen fixation Gluconacetobacter azotocaptans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter; 7.928819198 7.765665267 7.609850935 7.861233756 209885777 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 7.743065568 7.965059413 206676631 CODH Carbon cycling Carbon fixation Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.048282633 7.120729392 7.538198415 7.175122857 7.054340777 24377511 pstB Stress Phosphate limitation Streptococcus mutans UA159 7.633364641 7.598412388 7.597805105 7.88740605 7.87939259 88777864 ahpC Stress Oxygen stress Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 7.253129442 7.220118986 84383691 pimF Organic Remediation Aromatics Aromatic carboxylic acid Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 7.272290935 7.413833252 7.401909411 7.43468813 7.70853019 197322016 amoA Nitrogen Nitrification superkingdom:Archaea; 6.833430184 7.447891129 7.189059787 7.004851811 115373097 pulA Carbon cycling Carbon degradation Starch Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 7.474787687 7.232393557 39651362 alkK Organic Remediation Others Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.323014948 7.214981526 7.338853564 7.465274863 225194098 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.171129897 6.748150901 260950325 groEL Stress Heat shock Clavispora lusitaniae ATCC 42720 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Metschnikowiaceae;genus:Clavispora;species:Clavispora lusitaniae; 7.016157422 7.685703788 7.38611374 7.512658437 7.652299993 91693004 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.41823586 8.089936557 7.736861461 7.745095941 109456922 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 7.51152779 6.84486175 7.08237186 7.258683091 226721790 pstS Stress Phosphate limitation Azotobacter vinelandii DJ superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 7.191694446 7.484266426 7.45944817 7.200728985 32308041 narG Nitrogen Denitrification uncultured bacterium 7.277383349 7.417445437 7.374922875 7.624715325 126652634 srt virulence surface protein Bacillus sp. B14905 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7.062300299 7.626040648 7.248671941 219864859 ChrA Metal Resistance Chromium Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7.361419089 7.77115835 7.832894211 7.725235409 254472151 hrcA Stress Heat shock Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 7.598595282 7.498280259 111071938 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.307507956 7.59541121 157804821 APS_AprB Sulphur adenylylsulfate reductase Thiocapsa roseopersicina superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa; 7.107571052 7.10276556 269836811 SMR_antibiotics Antibiotic resistance transporter Sphaerobacter thermophilus DSM 20745 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 7.634832289 7.272643907 111017404 nahA Organic Remediation Aromatics Polycyclic aromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7.399447141 8.121909193 219677464 AceB Carbon cycling Carbon degradation others gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.292715822 6.973803198 7.424544945 73538760 chnB Organic Remediation Other Hydrocarbons Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7.740692985 7.681629971 7.630848415 7.530371566 7.374022044 125498713 hrcA Stress Heat shock Streptococcus sanguinis SK36 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus sanguinis; 7.260702398 7.78446174 83590599 glnA Stress Nitrogen limitation Moorella thermoacetica ATCC 39073 7.042427513 6.886371494 146401978 glycosyl_transferase_EPS Bioleaching EPS Acidiphilium cryptum JF-5 7.08230926 7.292904997 1655817 glnA Stress Nitrogen limitation 7.142713573 7.205969654 29243575 primase Bacteria phage REPLICATION Pseudomonas phage gh-1 order:Caudovirales;family:Podoviridae;genus:T7-like viruses; 7.748670708 7.53039798 109452474 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.431424371 7.837093816 149939137 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 6.927627214 7.645465787 151281171 obgE Stress Radiation stress Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 7.240709294 7.739216156 169793432 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.397960317 7.18619506 86558328 CopA Metal Resistance Copper Synechococcus sp. JA-2-3B'a(2-13) superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 6.864445041 7.549078318 7.697906506 261188698 phoA Stress Phosphate limitation Ajellomyces dermatitidis SLH14081 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 7.064837545 7.547937334 17132375 sigma_24 Stress Sigma factors Nostoc sp. PCC 7120 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc; 7.388378581 7.067905683 7.720256255 7.839419678 116621219 ara Carbon cycling Carbon degradation Hemicellulose Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 7.650948623 8.074173128 10038703 gyrB other category gyrB Buchnera aphidicola str. APS (Acyrthosiphon pisum) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Buchnera;species:Buchnera aphidicola; 7.888693207 7.625816381 7.78326402 7.561955172 7.957430981 238765085 amyA Carbon cycling Carbon degradation Starch Yersinia kristensenii ATCC 33638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia kristensenii; 6.821504743 7.446360253 6.877478589 7.157937542 257791418 SMR_antibiotics Antibiotic resistance transporter Eggerthella lenta DSM 2243 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Eggerthella;species:Eggerthella lenta; 6.876909524 7.154388802 170027495 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.498857248 7.914991641 7.901061998 7.471936162 7.749093221 41407368 pulA Carbon cycling Carbon degradation Starch Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 7.191701213 7.511392893 7.433156328 7.69965582 124509313 pstB Stress Phosphate limitation Shewanella putrefaciens 200 7.139045071 7.137424982 7.610552503 7.28942759 7.304343245 189354105 ArsC Metal Resistance Arsenic Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 7.237634 7.377615626 7.518082155 7.847553065 240172840 clpC Stress Protein stress Mycobacterium kansasii ATCC 12478 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 7.050751287 7.553047126 196254312 phoB Stress Phosphate limitation Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 6.829573872 6.80496647 91807180 nosZ Nitrogen Denitrification uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 7.158525748 7.129111908 218758127 gyrB other category gyrB Desulfovibrio vulgaris str. 'Miyazaki F' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 7.663588612 7.98944705 8.282343003 8.08032768 8.121383678 8.220699442 63029784 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.301020269 7.649873096 7.366759787 7.67286504 168193893 cbdA Organic Remediation Aromatics Chlorinated aromatics Methylobacterium sp. 4-46 7.285066577 7.018561625 222138071 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6.959809605 7.71551146 2633756 ZntA Metal Resistance Zinc Bacillus subtilis subsp. subtilis str. 168 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 6.980835903 7.435815331 214032003 phn Organic Remediation Herbicides related compound Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.616308123 8.017246542 169003831 TehB Metal Resistance Tellurium Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.633141687 7.55334754 209517148 ahpF Stress Oxygen stress Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.493974889 7.224642677 7.718409378 7.499729533 113867719 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 7.029430666 6.869908454 6.984995773 7.331984529 148474760 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.61821822 7.131566095 154154791 CopA Metal Resistance Copper Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 7.58229535 7.25390051 7.411537741 7.350170471 7.958319888 87331914 nahA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium superkingdom:Bacteria; 6.820982883 7.263126713 7.573958558 91690226 sigma_70 Stress Sigma factors Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.599407884 7.948442334 7.699842432 7.607991334 73749283 PceA Organic Remediation Others Dehalococcoides sp. CBDB1 7.800787716 8.000891263 7.568159679 8.137265396 148655866 clpC Stress Protein stress Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 7.270558381 7.906956259 7.941685387 7.64701978 260063621 sigma_24 Stress Sigma factors Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 7.068863373 7.14399538 260536828 nrfA Nitrogen Dissimilatory N reduction Prevotella veroralis F0319 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella veroralis; 6.833627923 6.944862984 161519848 CopA Metal Resistance Copper Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 7.35641526 7.356505119 7.266488335 7.344492706 7.442427548 269102360 pstS Stress Phosphate limitation Photobacterium damselae subsp. damselae CIP 102761 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium damselae; 7.061905604 7.480282978 197282094 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 6.657843348 7.324004535 56566204 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.699153966 7.340774935 283438516 Mex Antibiotic resistance transporter Pirellula staleyi DSM 6068 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Pirellula;species:Pirellula staleyi; 7.023142023 6.781947402 7.547526151 145317680 ahpF Stress Oxygen stress Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 7.274433659 7.427317038 76577576 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.494703248 7.004481535 7.179490547 7.132636867 84326689 limEH Carbon cycling Carbon degradation Others Pseudomonas aeruginosa 2192 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 7.784611346 7.912613793 8.307357869 8.17625968 8.11017033 7.936759566 148253712 linB Organic Remediation Pesticides related compound Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 6.967611775 7.277884328 87130706 nosZ Nitrogen Denitrification Sinorhizobium sp. PD 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium; 7.517631603 7.440720872 193213197 SMR_antibiotics Antibiotic resistance transporter Chlorobaculum parvum NCIB 8327 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum parvum; 7.593250273 8.025641239 218392788 glnA Stress Nitrogen limitation marine gamma proteobacterium HTCC2080 6.94475199 7.592992092 7.867324712 7.430817944 7.789624316 118036843 nhh Organic Remediation Aromatics Nitoaromatics Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.467735145 7.707119875 7.332017399 7.301742987 229542066 SMR_antibiotics Antibiotic resistance transporter Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 7.339693332 7.447689911 7.232784756 7.460228795 145283209 dsrB Sulphur sulfite reductase Pyrobaculum arsenaticum DSM 13514 6.89002059 7.489610223 7.420053982 7.124992645 7.433645515 151500319 SMR_antibiotics Antibiotic resistance transporter Delftia acidovorans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia; 7.049168925 7.443619117 255007839 fnr Stress Oxygen stress Bacteroides fragilis 3_1_12 7.798959569 7.686089132 7.675498461 7.626419626 7.465836936 119404184 nitA Organic Remediation Aromatics Other aromatics Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7.026034557 7.645758341 7.456017971 7.777260723 7.763158076 169002056 gyrB other category gyrB Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7.141167511 7.546666955 109702593 oxyR Stress Oxygen stress Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 7.397733527 7.789131225 160916190 groEL Stress Heat shock Eubacterium dolichum DSM 3991 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichi;order:Erysipelotrichales;family:Erysipelotrichaceae;species:Eubacterium dolichum; 6.858979386 7.470978913 121495588 narG Nitrogen Denitrification uncultured bacterium 7.622107057 7.614495142 7.719219423 7.567170462 85670855 nhh Organic Remediation Aromatics Nitoaromatics Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8.067567714 8.109433797 8.174862588 7.836694311 7.891608545 118424385 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.184913844 7.165455009 7.600402442 7.523273673 7.559551845 88820050 sigma_32 Stress Sigma factors Pseudoalteromonas tunicata D2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas tunicata; 6.876089583 7.293932944 88808477 glnA Stress Nitrogen limitation Synechococcus sp. WH 7805 6.63257511 6.779317981 196248924 pstB Stress Phosphate limitation Geobacillus sp. G11MC16 6.813082171 7.500226423 39837174 gyrB other category gyrB Pseudomonas stutzeri superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7.478178018 7.534760442 82617411 pstC Stress Phosphate limitation uncultured archaeon superkingdom:Archaea; 7.294053321 7.651666521 186686282 nitro Organic Remediation Others Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 6.965653514 6.92587816 28542591 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.221281083 7.286047594 150956206 ppk Phosphorus Phosphorus utilization Klebsiella pneumoniae subsp. pneumoniae MGH 78578 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 8.01399646 7.971262881 225197136 sigma_70 Stress Sigma factors Desulfonatronospira thiodismutans ASO3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfonatronospira;species:Desulfonatronospira thiodismutans; 6.973616001 7.712401308 78363170 pstB Stress Phosphate limitation Thiomicrospira crunogena XCL-2 6.828469812 7.388985709 84361373 mer Metal Resistance Mercury Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 7.181368875 7.197659556 186468473 TerD Metal Resistance Tellurium Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 6.960304 7.412697284 56697265 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 7.229667728 6.801858953 7.723011905 283811003 sigma_24 Stress Sigma factors Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 7.330761554 7.439504894 280958706 Tet Antibiotic resistance other Desulfovibrio aespoeensis Aspo-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio aespoeensis; 7.442387381 7.674043546 7.494530561 7.471917175 152025367 SMR_antibiotics Antibiotic resistance transporter Bacillus cereus subsp. cytotoxis NVH 391-98 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cytotoxicus; 6.810169145 7.24549244 7.298522948 110833947 NirB Nitrogen Assimilatory N reduction Alcanivorax borkumensis SK2 6.84601904 7.230861977 7.048841696 6.919978283 51013877 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Saccharomyces cerevisiae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Saccharomyces; 6.811084754 7.362415951 255259058 hly virulence hemolysin Sideroxydans lithotrophicus ES-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Sideroxydans;species:Sideroxydans lithotrophicus; 7.059642772 7.510699998 7.595400008 7.662010329 170116467 glx Carbon cycling Carbon degradation Lignin Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 7.119580479 7.567493529 198283622 sigma_38 Stress Sigma factors Acidithiobacillus ferrooxidans ATCC 53993 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 7.316699417 7.907861825 7.737677493 7.396804248 7.863600946 115256277 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7.103322899 7.906679957 7.866399182 7.751528935 7.764913696 225194064 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.186268176 7.264742732 162568571 aoxB Metal Resistance Arsenic uncultured bacterium superkingdom:Bacteria; 7.596006015 7.68876401 255507647 ahpF Stress Oxygen stress Clostridium carboxidivorans P7 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium carboxidivorans; 6.617442443 7.392575134 220903805 fnr Stress Oxygen stress Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7.081277261 7.862387857 15076287 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Sinorhizobium meliloti superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium; 7.221822156 7.376914383 7.607746889 7.818972751 114054559 xylanase Carbon cycling Carbon degradation Hemicellulose Geobacillus stearothermophilus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7.149247333 7.658169455 242280851 pstB Stress Phosphate limitation Desulfovibrio salexigens DSM 2638 6.565851585 7.406887542 87281197 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.460871402 7.681149805 8.062750413 7.999494542 7.909037606 88919811 phn Organic Remediation Herbicides related compound Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 7.308488391 8.092612043 7.831163799 7.237825983 7.47844363 49654978 tfdA Organic Remediation Aromatics Chlorinated aromatics Debaryomyces hansenii CBS767 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Debaryomyces;species:Debaryomyces hansenii; 7.153691986 7.936438707 7.612380637 7.41612302 209550266 fnr Stress Oxygen stress Rhizobium leguminosarum bv. trifolii WSM2304 6.843335447 6.989523974 7.416979349 118437303 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 7.886201288 7.510748567 7.935441589 7.324215364 7.14752462 89068153 mer Metal Resistance Mercury Oceanicola granulosus HTCC2516 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 7.682326791 7.628778833 7.531154918 7.530795332 108764375 SMR_antibiotics Antibiotic resistance transporter Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 7.590390969 8.05343376 8.136278272 7.929472811 7.986913509 89900817 ppx Phosphorus Phosphorus utilization Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 7.012870316 7.83006918 7.339813102 7.369000155 257441354 glnA Stress Nitrogen limitation Campylobacter gracilis RM3268 7.746428513 7.670633168 8.064901477 8.077974506 208936530 dsrA Sulphur sulfite reductase uncultured prokaryote 6.633917927 6.653044162 7.283474867 158138911 narG Nitrogen Denitrification uncultured bacterium 6.989910791 7.33245342 76261089 TerC Metal Resistance Tellurium Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 6.886705855 7.384250216 152980543 Arylest Organic Remediation Aromatics Other aromatics Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 6.862462738 7.5118713 158251634 APS_AprA Sulphur adenylylsulfate reductase uncultured alpha proteobacterium 7.538562143 7.682961269 239597467 ctsR Stress Protein stress Staphylococcus warneri L37603 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus warneri; 6.74294391 7.309164196 32443500 oxyR Stress Oxygen stress Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 7.389890849 7.356500003 7.751639096 7.592442686 7.999818828 212539233 nagG Organic Remediation Aromatics Aromatic carboxylic acid Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 6.764153388 7.026120632 253997592 ahpF Stress Oxygen stress Methylotenera mobilis JLW8 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylotenera;species:Methylotenera mobilis; 6.806008715 7.287028133 212537377 BpH Organic Remediation Aromatics Aromatic carboxylic acid Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.268816509 7.273103134 7.024214459 7.153129229 7.447670708 94552320 grpE Stress Heat shock Candidatus Koribacter versatilis Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 6.643091065 6.969261444 7.586305462 219675955 mauAB Organic Remediation Herbicides related compound gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.695693668 8.02133499 7.537879451 8.024408405 7.874490161 8.113599914 212223996 ahpC Stress Oxygen stress Thermococcus onnurineus NA1 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus onnurineus; 6.851890113 7.248333194 145558157 sox Sulphur Sulphur oxidation Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 7.471216208 6.993582435 39651589 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.461234947 7.583212964 114537094 nifH Nitrogen Nitrogen fixation Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 7.290876686 7.789425282 7.899671074 7.85304429 7.963147866 83026014 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 7.267771156 6.98275044 1865707 lysin Bacteria phage LYSIS Bacillus phage TP21-L order:Caudovirales;family:Siphoviridae; 6.797211969 7.325903092 60476284 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.411442902 7.771726412 7.910888722 7.65217554 7.635897205 198267991 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 7.639239655 7.362144839 7.594499775 213928028 alkK Organic Remediation Others Pseudomonas syringae pv. tomato T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 7.19005467 7.435784447 7.602330415 7.60663705 15677191 ZntA Metal Resistance Zinc Neisseria meningitidis MC58 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria meningitidis; 7.192435361 7.639042262 110818266 nmoA Organic Remediation Aromatics Nitoaromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7.189464307 7.359016914 154293009 nitA Organic Remediation Aromatics Other aromatics Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 6.974641568 7.386563937 83724327 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia solanacearum UW551 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 7.22934695 7.384110416 7.325338193 7.237145877 7.372795461 145591326 glnA Stress Nitrogen limitation Pyrobaculum arsenaticum DSM 13514 7.200318332 7.278797727 146340960 tfdA Organic Remediation Aromatics Chlorinated aromatics Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.204904525 7.486607278 7.047913674 7.365826229 152971961 gyrB other category gyrB Klebsiella pneumoniae subsp. pneumoniae MGH 78578 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 6.977742019 7.449923993 7.3687129 7.545473962 189425122 cytochrome Energy process Energy process Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 7.840624156 7.755158338 7.20063221 7.601467475 7.542989385 7.594306857 91787913 silC Metal Resistance Silver Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 6.992635526 7.652903082 7.556797508 7.55472599 7.542535371 7.53202839 88863625 oxyR Stress Oxygen stress Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 7.578668445 8.188451854 8.22655285 7.801055127 7.597836645 7.82622823 81428118 pstB Stress Phosphate limitation Lactobacillus sakei subsp. sakei 23K 6.670219161 7.522787133 67773582 phenol_oxidase Carbon cycling Carbon degradation Lignin Hortaea acidophila superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Dothideales;genus:Hortaea; 7.193691189 7.251449009 83842596 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 7.608886406 7.653033273 7.394767778 7.698569934 78360708 amyA Carbon cycling Carbon degradation Starch Shewanella sp. PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 6.880451711 7.368806683 7.33487769 7.316945891 114193737 pheA Organic Remediation Aromatics Other aromatics Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.393442133 7.62343695 27348387 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7.576602567 7.411305703 7.321777008 7.451804735 237784978 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium kroppenstedtii; 7.09337394 6.883846132 116694649 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 7.387641158 7.932679382 7.401460236 7.68923174 90107783 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.61784093 7.869026142 7.909034394 7.677068212 7.83506165 120612990 pcc Carbon cycling Carbon fixation Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 7.798829935 7.823561456 7.816237179 7.748931915 12667624 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium UMTRAdsr828-28 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 7.993207935 7.54484628 126727626 Catechol Organic Remediation Aromatics Other aromatics Rhodobacterales bacterium HTCC2150 7.407544294 7.351309886 148474786 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.238013542 7.193706787 134094417 sox Sulphur Sulphur oxidation Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 7.365998325 7.647650768 120554008 B_lactamase_A Antibiotic resistance Beta-lactamases Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 6.991257489 7.474344277 7.707234768 152972343 CadA Metal Resistance Cadmium Klebsiella pneumoniae subsp. pneumoniae MGH 78578 7.274821612 7.023402984 224369940 pstA Stress Phosphate limitation Desulfobacterium autotrophicum HRM2 7.229549892 7.676896613 71280284 CorC Metal Resistance Cobalt Colwellia psychrerythraea 34H superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Colwelliaceae;genus:Colwellia;species:Colwellia psychrerythraea; 6.751711909 7.497921663 150030902 nmoA Organic Remediation Aromatics Nitoaromatics Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 7.933592903 7.083484238 7.246074356 8.322799422 82940947 cellobiase Carbon cycling Carbon degradation Cellulose Paenibacillus sp. HC1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 6.849270108 7.40116091 213952754 sigma_70 Stress Sigma factors Corynebacterium amycolatum SK46 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium amycolatum; 7.599018926 7.993541529 7.960176648 7.700928486 7.951213402 32474211 ZntA Metal Resistance Zinc Rhodopirellula baltica SH 1 7.147003374 7.385916455 227348699 cspA Stress Cold shock Corynebacterium pseudogenitalium ATCC 33035 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium pseudogenitalium; 7.400269771 7.911322176 7.423517404 7.864805659 216056 major_capsid_protein Bacteria phage STRUCTURAL Bacillus phage PZA order:Caudovirales;family:Podoviridae;genus:Phi29-like viruses;species:Bacillus phage phi29; 6.926768082 7.569685688 170090752 pimF Organic Remediation Aromatics Aromatic carboxylic acid Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 6.87300885 7.462235687 7.044474428 7.319105127 260769411 groEL Stress Heat shock Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 6.569366579 7.760334451 7.538816062 6.918559698 124509720 ChrA Metal Resistance Chromium Shewanella putrefaciens 200 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella putrefaciens; 6.763558959 7.412195177 219674207 sigma_70 Stress Sigma factors gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.56329237 6.977336119 7.76270919 73669394 CopA Metal Resistance Copper Methanosarcina barkeri str. fusaro superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina barkeri; 7.145907941 7.427931064 118747581 proO Organic Remediation Aromatics Other aromatics Marinomonas sp. MWYL1 7.841767531 7.348416558 7.226472323 7.317148024 158138884 narG Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.317377136 7.529778767 7.513277009 7.327760631 34500161 gyrB other category gyrB Pantoea dispersa superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 7.096496925 6.933628604 118666173 linB Organic Remediation Pesticides related compound Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.216126214 7.096842344 7.442932007 7.632124676 116265518 ureC Nitrogen Ammonification Polynucleobacter sp. QLW-P1DMWA-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 7.575199806 7.32778751 68546578 ChrA Metal Resistance Chromium Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 6.939464174 7.600783754 6.862185625 7.412653468 212707609 ppx Phosphorus Phosphorus utilization Providencia rustigianii DSM 4541 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 7.02003119 6.875123494 7.640823334 88809539 fnr Stress Oxygen stress Synechococcus sp. WH 7805 7.408579199 7.668188438 7.430188503 7.516055491 209515847 carA Organic Remediation Aromatics Heterocyclic aromatics Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.755901045 7.430770964 110336346 ZntA Metal Resistance Zinc Acidovorax sp. JS42 7.85537305 8.366982703 8.067035467 7.901529737 116670482 Catechol Organic Remediation Aromatics Other aromatics Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.505222514 7.813465869 7.590054559 7.457246693 94264231 gyrB other category gyrB delta proteobacterium MLMS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 6.843980536 6.981836822 7.198493565 7.491844609 156189488 pulA Carbon cycling Carbon degradation Starch Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 6.687558978 7.307884365 220923548 sigma_24 Stress Sigma factors Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 7.552298493 7.110037621 227181770 opuE Stress Osmotic stress Corynebacterium glucuronolyticum ATCC 51866 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glucuronolyticum; 7.308954068 7.868952072 7.969347139 7.633272563 7.961823768 254523132 B_lactamase_C Antibiotic resistance Beta-lactamases Stenotrophomonas sp. SKA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 7.060550085 7.450575798 88860514 endochitinase Carbon cycling Carbon degradation Chitin Pseudoalteromonas tunicata D2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas tunicata; 7.124842089 7.023992158 114561389 cytochrome Energy process Energy process Shewanella frigidimarina NCIMB 400 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella frigidimarina; 6.670539758 7.533344145 37925044 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7.310790409 6.954541513 124495654 ureC Nitrogen Ammonification Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 7.193718299 7.789532196 7.34902874 7.319096712 7.495424982 78093542 narG Nitrogen Denitrification uncultured bacterium 7.249632568 7.415058201 7.352089404 7.719568168 32447712 gyrB other category gyrB Streptococcus oralis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 6.806728268 7.501313672 225165689 sigma_24 Stress Sigma factors Opitutaceae bacterium TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 8.020799385 7.282476387 148272519 TerC Metal Resistance Tellurium Clavibacter michiganensis subsp. michiganensis NCPPB 382 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 7.350255601 7.93185685 7.487275497 7.839565415 91795395 exaA Organic Remediation Chlorinated solvents Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 7.407653862 7.441071177 7.348982701 7.617469564 77960011 amyA Carbon cycling Carbon degradation Starch Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 6.897128518 7.60860879 238590806 phenol_oxidase Carbon cycling Carbon degradation Lignin Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 6.457615032 7.409174329 223717929 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae; 7.64924499 7.102409734 6.902314311 7.431356549 113731798 limEH Carbon cycling Carbon degradation Others Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 7.286093971 7.519652835 118730166 nagG Organic Remediation Aromatics Aromatic carboxylic acid Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.328526349 7.934573824 7.953126966 7.563694701 7.661542228 170690694 B_lactamase_A Antibiotic resistance Beta-lactamases Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 7.044422386 6.898659434 166797394 sox Sulphur Sulphur oxidation Vesicomya sp. mt-II symbiont superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 6.957627055 7.042805186 53732523 cap virulence capsule Haemophilus influenzae R2846 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus influenzae; 6.756597846 6.860699233 6.897278239 7.059175209 7.209518345 39996330 cytochrome Energy process Energy process Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 7.642015281 7.594451082 7.574439327 86137338 sox Sulphur Sulphur oxidation Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 6.971896441 7.378453957 212715085 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Bifidobacterium pseudocatenulatum DSM 20438 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium pseudocatenulatum; 6.774349248 7.365549439 239909269 B_lactamase_A Antibiotic resistance Beta-lactamases Enterobacter cloacae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 6.860599478 7.365044772 7.632858734 74317490 mer Metal Resistance Mercury Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 7.622283871 7.520540676 7.230034986 7.413241172 187604870 CadA Metal Resistance Cadmium Exiguobacterium sp. AT1b 7.289860375 7.49627024 7.995695021 7.67496205 7.650646951 7.385974277 36955682 nbaC Organic Remediation Aromatics Nitoaromatics Gemmata sp. Wa1-1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata; 7.155639165 7.315917465 254516078 glnA Stress Nitrogen limitation gamma proteobacterium NOR5-3 7.262109998 7.182910049 32350362 clamp_loader_T4_ATPase Bacteria phage REPLICATION Enterobacteria phage RB69 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 6.553457246 7.236643129 90413947 CadA Metal Resistance Cadmium Photobacterium profundum 3TCK 6.573664216 7.323751618 238724680 hly virulence hemolysin Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 6.685764071 7.547480467 284007405 type_III_secretion virulence secretion Arsenophonus nasoniae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Arsenophonus; 6.961083433 7.240594781 15612766 alkH Organic Remediation Other Hydrocarbons Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 7.174330922 7.35600023 7.656577349 7.656610537 7.637272027 188028622 phoA Stress Phosphate limitation Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 6.804798248 6.578526899 7.306998967 153010556 CopA Metal Resistance Copper Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 7.376186017 7.555924832 219564813 Arylest Organic Remediation Aromatics Other aromatics uncultured marine bacterium superkingdom:Bacteria; 6.872279311 7.396677926 170727465 cytochrome Energy process Energy process Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 6.997402515 7.159771037 7.415373199 7.517328076 14134098 AceA Carbon cycling Carbon degradation others Penicillium marneffei superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 6.815016151 7.509776281 7.237199645 6.989969793 94970015 pilin virulence pilin Candidatus Koribacter versatilis Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 7.838621872 7.787030316 118434680 type_III_secretion virulence secretion Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 7.185733727 7.111773776 264677112 sigma_24 Stress Sigma factors Comamonas testosteroni CNB-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.126512456 7.745323755 21217679 rubisco Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.120391166 7.088001712 7.524676145 7.229867852 8.110208904 49072890 nagI Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 7.245021892 7.099936182 8886078 endochitinase Carbon cycling Carbon degradation Chitin Ajellomyces dermatitidis superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces; 7.16457825 7.448056576 7.968740522 7.401908353 7.459061968 63082024 nosZ Nitrogen Denitrification unidentified bacterium superkingdom:Bacteria; 6.966590566 7.468701666 7.843186136 7.471075042 152980973 ahpF Stress Oxygen stress Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 6.872924684 7.276355447 151592225 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Methylobacterium extorquens PA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 7.159023536 7.322792194 7.448684023 7.430675951 6.983890264 53714038 catB Organic Remediation Aromatics BTEX and related aromatics Bacteroides fragilis YCH46 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 6.570645128 7.493918049 91780316 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.280610537 7.325080362 118681415 TerC Metal Resistance Tellurium Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 7.302302078 7.204970004 29150698 B_lactamase_C Antibiotic resistance Beta-lactamases Yokenella regensburgei superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yokenella; 7.113824943 7.07295584 197768726 TerC Metal Resistance Tellurium Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 7.342644029 7.340214886 110818466 pcpB Organic Remediation Herbicides related compound Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7.187115402 6.974920356 196184990 B_lactamase_A Antibiotic resistance Beta-lactamases Brevundimonas sp. BAL3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas; 7.049670528 7.202297748 121590431 AceB Carbon cycling Carbon degradation others Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 7.581135433 7.220679657 7.099161089 7.511946355 193498525 amoA Nitrogen Nitrification superkingdom:Archaea; 7.121835698 7.004276401 163261389 catB Organic Remediation Aromatics BTEX and related aromatics Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 7.554311045 7.292311977 28851402 TerZ Metal Resistance Tellurium Pseudomonas syringae pv. tomato str. DC3000 6.729057817 7.223891538 33237528 rubisco Carbon cycling Carbon fixation Prochlorococcus marinus subsp. marinus str. CCMP1375 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 6.946716866 6.906647087 221534101 SMR_antibiotics Antibiotic resistance transporter Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 7.470691764 7.574710265 7.482062899 7.177492704 89899392 pstA Stress Phosphate limitation Rhodoferax ferrireducens T118 7.017792771 7.484635025 91801638 MFS_antibiotic Antibiotic resistance transporter Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 7.74016833 7.608030001 51534769 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 6.603779814 7.442699006 196482280 tfdA Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 7.434915175 7.164500544 81251090 gyrB other category gyrB Nitrosovibrio sp. FJI82 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosovibrio; 7.117869184 7.510081738 7.507852054 7.260545719 147886208 phenol_oxidase Carbon cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 7.26965324 7.452291923 7.488662763 7.458908789 70982560 phytase Phosphorus Phosphorus utilization Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 7.015695438 7.274688526 94414927 nagI Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 7.360271006 7.15229981 7.258709562 7.306869577 71894132 amyA Carbon cycling Carbon degradation Starch Mycoplasma synoviae 53 superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Mycoplasmatales;family:Mycoplasmataceae;genus:Mycoplasma;species:Mycoplasma synoviae; 6.723210024 7.445127227 99082109 Arylest Organic Remediation Aromatics Other aromatics Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7.196563841 7.600008511 7.691040706 7.6280901 226098307 sigma_24 Stress Sigma factors Brevibacillus brevis NBRC 100599 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus brevis; 7.37542257 6.942481268 134292217 iro virulence Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 7.610323261 7.640006335 7.840855039 7.726497209 156977776 proV Stress Osmotic stress Vibrio harveyi ATCC BAA-1116 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 7.302342263 7.479137929 21217709 rubisco Carbon cycling Carbon fixation uncultured bacterium superkingdom:Bacteria; 7.071504171 6.862270958 34332917 T4_RNase_H Bacteria phage REPLICATION Vibrio phage KVP40 order:Caudovirales;family:Myoviridae;genus:T4-like viruses;species:Vibrio phage nt-1 sensu lato; 6.59334714 7.286790997 50083879 ahpC Stress Oxygen stress Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 7.000654755 6.920824558 7.231539406 260654502 pstS Stress Phosphate limitation Jonquetella anthropi E3_33 E1 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Jonquetella;species:Jonquetella anthropi; 7.599403383 8.183115945 7.761756181 8.089794938 7.628034401 253752138 sigma_70 Stress Sigma factors Streptococcus suis SC84 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus suis; 6.579975901 7.365437027 270286488 amoA Nitrogen Nitrification superkingdom:Bacteria; 7.37141477 7.111433841 110623040 arsB Metal Resistance Arsenic Arthrobacter sp. B02 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 6.888106791 6.658638685 7.338066087 114539635 ppx Phosphorus Phosphorus utilization Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 7.520566883 7.814098425 7.750931781 7.89120856 70996356 phenol_oxidase Carbon cycling Carbon degradation Lignin Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 7.287503418 7.130901538 90409909 iuc virulence aerobactin Photobacterium profundum 3TCK superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 7.056206253 7.456733758 6900940 TerD Metal Resistance Tellurium Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 7.733703378 7.319152219 7.424377478 7.475575059 124520286 nifH Nitrogen Nitrogen fixation Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 7.611490047 7.485385474 7.294433842 7.78632321 8.136606056 83359470 CopA Metal Resistance Copper Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 7.973453711 7.00452543 163854678 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 7.033611893 7.444902445 7.29588154 7.30953101 85373707 ahpC Stress Oxygen stress Erythrobacter litoralis HTCC2594 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 6.982680929 7.419779419 118424403 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.229964597 7.607182679 88926806 nifH Nitrogen Nitrogen fixation Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 7.422265867 7.945462788 7.631622824 7.770118366 8.247737337 46917306 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.159915208 7.330053738 170102583 glnA Stress Nitrogen limitation Laccaria bicolor S238N-H82 6.826150258 7.269041269 110819085 AceB Carbon cycling Carbon degradation others Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7.382744671 7.940614884 8.019348439 7.917019294 7.877015883 198257193 mannanase Carbon cycling Carbon degradation Hemicellulose Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 7.133441373 7.257787086 255280844 ahpF Stress Oxygen stress Bryantella formatexigens DSM 14469 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;species:Bryantella formatexigens; 7.47282238 7.374233832 7.87021574 121704720 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 6.676061133 7.62292662 260151039 obgE Stress Radiation stress Brucella melitensis bv. 1 str. 16M superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Brucella;species:Brucella melitensis; 7.750506123 7.945071217 218548985 CMCI Organic Remediation Aromatics Other aromatics Escherichia fergusonii ATCC 35469 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia fergusonii; 7.163582659 7.446037566 208936504 dsrA Sulphur sulfite reductase uncultured prokaryote 6.840729135 7.216281087 266631187 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 6.773106408 7.529430775 7.23551846 7.082801583 7.655674581 225199718 arcB Stress Oxygen limitation Desulfonatronospira thiodismutans ASO3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfonatronospira;species:Desulfonatronospira thiodismutans; 7.853220499 7.874583253 7.953012496 256672985 pstC Stress Phosphate limitation Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7.219132601 7.535325665 2879917 arsenic_resistance_gene Bioleaching Metal Resistance Acidiphilium multivorum 7.158089046 7.27256595 7.351034581 7.135024278 88698554 ArsC Metal Resistance Arsenic gamma proteobacterium KT 71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 6.827493759 7.561663122 256728095 ara_fungi Carbon cycling Carbon degradation Hemicellulose Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 7.282226759 7.66285985 110634945 exaA Organic Remediation Chlorinated solvents Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 7.230915023 7.222780092 119953556 obgE Stress Radiation stress Borrelia turicatae 91E135 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Spirochaetaceae;genus:Borrelia;species:Borrelia turicatae; 7.468567786 7.293810645 7.552358412 163867064 sigma_70 Stress Sigma factors Burkholderia andropogonis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.0858133 7.391152617 49473894 pstA Stress Phosphate limitation Bartonella quintana str. Toulouse 7.314402271 7.724221869 146191132 fnr Stress Oxygen stress Bradyrhizobium sp. ORS278 7.742347901 7.282753068 7.461260519 157285638 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 6.639272879 7.603068523 222450795 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Chloroflexus sp. Y-400-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus; 7.919307869 7.882997592 7.688214155 151575651 catB Organic Remediation Aromatics BTEX and related aromatics Ralstonia pickettii 12D 7.398031611 7.37191432 126105379 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacter sphaeroides ATCC 17029 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 7.532227435 7.431734188 122088729 dmsA Organic Remediation Others Yersinia enterocolitica subsp. enterocolitica 8081 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 7.727562524 7.320710359 7.471176039 90439809 pstB Stress Phosphate limitation Vibrio angustum S14 6.700090605 7.509643414 39577138 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bdellovibrio bacteriovorus HD100 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 7.207381038 7.346986373 261212275 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Vibrio sp. RC341 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 6.756576368 7.405485725 56068670 merP Metal Resistance Mercury Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 7.515848789 7.516406671 73748499 CODH Carbon cycling Carbon fixation Dehalococcoides sp. CBDB1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7.148394085 7.785504288 28270442 pstB Stress Phosphate limitation Lactobacillus plantarum WCFS1 7.241769475 7.619134266 145246292 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.461073289 7.378321913 7.600562736 219863991 glnA Stress Nitrogen limitation Cyanothece sp. PCC 7425 7.146197178 7.528636887 266623103 fnr Stress Oxygen stress Clostridium hathewayi DSM 13479 6.934469501 7.699257891 67516965 tftH Organic Remediation Aromatics Chlorinated aromatics Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.32595793 7.400080676 7.560927589 111073759 endochitinase Carbon cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 7.451981555 7.48850677 16503194 pstB Stress Phosphate limitation Salmonella enterica subsp. enterica serovar Typhi 6.927754195 7.290061236 53804553 cydB Stress Oxygen limitation Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 6.807101244 7.29942569 224989215 pstB Stress Phosphate limitation Mycobacterium bovis BCG str. Tokyo 172 7.949530849 8.096307583 4996776 gyrB other category gyrB bacterium rJ4 superkingdom:Bacteria; 6.993397307 7.241402795 7.280242684 7.427448978 77961546 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 7.310066912 7.641327816 120325952 czcD Metal Resistance "Cadmium,Cobalt,Zinc" Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 7.30094705 8.035285378 145112 hydrogenase Energy process Energy process NiFe]hydrogenase protein large subuni superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 7.35305164 7.06176345 7.245577987 111614523 pcc Carbon cycling Carbon fixation Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 6.777014489 7.354152969 223470324 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.852146039 7.799126184 15606731 aclB Carbon cycling Carbon fixation Aquifex aeolicus VF5 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Aquifex;species:Aquifex aeolicus; 7.149623806 7.681553516 196166909 phdCI Organic Remediation Aromatics Polycyclic aromatics Acidovorax sp. NA3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 6.843847371 7.132060116 188481049 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.592382451 7.582292425 7.786538765 190010018 gyrB other category gyrB Stenotrophomonas maltophilia K279a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 7.513966113 7.153164051 187483982 TerC Metal Resistance Tellurium Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 7.407244981 7.221301197 55540868 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7.409044314 7.805190093 224024328 sigma_24 Stress Sigma factors Bacteroides coprophilus DSM 18228 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides coprophilus; 6.851831106 7.607071535 224950732 grpE Stress Heat shock Clostridium methylpentosum DSM 5476 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium methylpentosum; 7.055079136 7.664519591 56965568 alkH Organic Remediation Other Hydrocarbons Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 7.494477532 7.16275457 239823938 fnr Stress Oxygen stress Ochrobactrum intermedium LMG 3301 7.531091047 7.439086396 212543007 pheA Organic Remediation Aromatics Other aromatics Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7.585322013 7.649836752 119776151 cytochrome Energy process Energy process Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 7.802302774 7.440540414 109452510 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6.458185193 7.191375136 5823251 glnA Stress Nitrogen limitation Trichodesmium sp. IMS101 7.661230238 8.276234708 13183353 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae; 6.915052185 7.305883303 68164626 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 6.94112438 7.449389979 134293320 iro virulence Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 7.267348393 7.533021986 258645709 ppk Phosphorus Phosphorus utilization Dialister invisus DSM 15470 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Dialister;species:Dialister invisus; 7.648668996 7.832113388 8.067003075 218761884 pcc Carbon cycling Carbon fixation Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 7.073200433 7.192175859 1294828 nifH Nitrogen Nitrogen fixation Fischerella sp. UTEX 1931 superkingdom:Bacteria;phylum:Cyanobacteria;order:Stigonematales;genus:Fischerella; 6.839537818 7.657301902 71546566 gyrB other category gyrB Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 6.591949046 7.324398674 7.02596225 6.958669207 113933127 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8.008243725 8.220720131 8.179591675 7.970168091 151582866 TerC Metal Resistance Tellurium Opitutaceae bacterium TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 7.134663844 7.548695179 229360841 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.512652557 7.895601938 163868809 MFS_antibiotic Antibiotic resistance transporter Bartonella tribocorum CIP 105476 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella tribocorum; 6.592822713 7.18585475 15458643 pulA Carbon cycling Carbon degradation Starch Streptococcus pneumoniae R6 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus pneumoniae; 6.783519928 7.362004121 126355662 nmoA Organic Remediation Aromatics Nitoaromatics Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7.627698352 7.687540217 188481191 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 7.259777105 7.429681142 91693048 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.166153071 7.226036421 261252242 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Vibrio orientalis CIP 102891 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 6.833838046 7.450090047 91685872 fnr Stress Oxygen stress Burkholderia xenovorans LB400 7.017636839 7.423627816 134093795 SilA Metal Resistance Silver Herminiimonas arsenicoxydans 7.367508444 7.640182159 7.374325268 7.062364186 86166177 pimF Organic Remediation Aromatics Aromatic carboxylic acid Marinomonas sp. MED121 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 6.464954073 7.250631305 120401487 bphA Organic Remediation Aromatics Polycyclic aromatics Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 7.514362411 7.393660792 7.49255767 52005699 AceB Carbon cycling Carbon degradation others Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 6.95463386 7.642758261 78185927 dsrB Sulphur sulfite reductase Pelodictyon luteolum DSM 273 7.47225341 7.223737769 33385571 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.055315831 7.331884403 197709902 ureC Nitrogen Ammonification Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 7.630310595 7.105572255 7.542634066 268163970 pilin virulence pilin Photobacterium damselae subsp. damselae CIP 102761 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium damselae; 7.766923332 7.362934664 116061989 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.50448229 7.206882986 78188302 BchY other category chlorophyllide reductase Chlorobium chlorochromatii CaD3 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium chlorochromatii; 7.833958815 8.165869265 7.735664777 7.594779536 7.790563777 126623739 nagI Organic Remediation Aromatics Aromatic carboxylic acid Flavobacteria bacterium BAL38 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales; 7.525428122 8.002026997 7.88343772 24372443 pilin virulence pilin Shewanella oneidensis MR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella oneidensis; 7.117125615 7.135493989 7.52598779 76803768 alkB Organic Remediation Other Hydrocarbons uncultured bacterium superkingdom:Bacteria; 7.216659433 7.575114896 17385550 narG Nitrogen Denitrification uncultured bacterium 7.260028594 7.617358999 7.349159007 7.327680211 36784829 cydA Stress Oxygen limitation Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 7.223484254 7.582403626 149926089 type_III_secretion virulence secretion Limnobacter sp. MED105 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 6.588202302 7.447170077 115516397 rubisco Carbon cycling Carbon fixation Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7.188915832 7.228076386 7.29602044 119412007 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 7.064448923 7.392903911 46133885 amyA Carbon cycling Carbon degradation Starch Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 6.881339201 7.440528178 7.161821107 7.287528036 119766274 ChrA Metal Resistance Chromium Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 7.664362621 7.605264979 17570802 ssb Bacteria phage REPLICATION Enterobacteria phage T3 order:Caudovirales;family:Podoviridae;genus:T7-like viruses; 7.133320835 7.581217168 56313587 pcc Carbon cycling Carbon fixation Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 8.352040656 8.124051263 8.258208061 114737563 limEH Carbon cycling Carbon degradation Others Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 7.163815211 7.167150791 222086807 ureC Nitrogen Ammonification Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7.045838612 7.503015756 83316758 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.332314843 8.005247006 7.615925548 7.340927662 148545459 cytochrome Energy process Energy process Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 6.859489151 7.514443794 7.263612778 7.090421757 146405645 AmiE Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7.195429173 7.608627106 122089354 oxyR Stress Oxygen stress Yersinia enterocolitica subsp. enterocolitica 8081 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 6.542378462 7.428552588 187479329 alkK Organic Remediation Others Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 7.020790707 7.629223502 53754227 mer Metal Resistance Mercury Legionella pneumophila str. Lens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella;species:Legionella pneumophila; 6.698957952 7.296281189 28853673 NiR Nitrogen Assimilatory N reduction Pseudomonas syringae pv. tomato str. DC3000 7.501877975 7.486737298 260895235 katE Stress Oxygen stress Vibrio parahaemolyticus Peru-466 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.445141171 7.255749091 7.364520045 41529304 toxin virulence toxin Escherichia coli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 6.623852955 7.360343419 223939330 endochitinase Carbon cycling Carbon degradation Chitin bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 7.107530056 7.323550014 254222220 ppk Phosphorus Phosphorus utilization Vibrio cholerae RC385 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 6.784515157 7.251452286 7.014959773 6.859036452 247534045 amyA Carbon cycling Carbon degradation Starch Aggregatibacter aphrophilus NJ8700 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Aggregatibacter;species:Aggregatibacter aphrophilus; 7.042953212 7.354726353 254970628 fnr Stress Oxygen stress Acidithiobacillus caldus ATCC 51756 6.935019221 7.644454432 85093289 nagG Organic Remediation Aromatics Aromatic carboxylic acid Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 7.268483903 6.995926791 126387042 pchA Organic Remediation Aromatics BTEX and related aromatics Acinetobacter baumannii ATCC 17978 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 8.112671221 8.188384443 189422146 hrcA Stress Heat shock Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 6.948634145 7.441313147 106773721 TerZ Metal Resistance Tellurium Clostridium sp. OhILAs superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus oremlandii; 6.761883422 7.218864738 88709354 amyA Carbon cycling Carbon degradation Starch Flavobacteriales bacterium HTCC2170 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales; 7.842900909 7.922438903 8.353074983 40745174 tftH Organic Remediation Aromatics Chlorinated aromatics Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.549919201 7.42565312 58254562 obgE Stress Radiation stress Lactobacillus acidophilus NCFM superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus acidophilus; 6.93780251 7.340395719 121592577 Catechol Organic Remediation Aromatics Other aromatics Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 7.271115493 7.66654918 209883568 hrcA Stress Heat shock Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 7.559176741 7.488288871 226832219 clpC Stress Protein stress Actinomyces coleocanis DSM 15436 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces coleocanis; 6.829188372 7.332680274 118424328 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6.875781775 7.184849666 280961388 sigma_70 Stress Sigma factors Frankia sp. EuI1c superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 7.439812117 7.691404052 261342495 sigma_70 Stress Sigma factors Enterobacter cancerogenus ATCC 35316 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 7.050962265 7.208064848 88790515 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 7.555393018 8.059454288 7.473323291 7.331948129 187236244 mcrA Carbon cycling Methane Methane production uncultured archaeon superkingdom:Archaea; 7.469573691 7.282684241 193224761 pimF Organic Remediation Aromatics Aromatic carboxylic acid Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 7.286005387 7.180665158 126637987 hydrogenase Energy process Energy process Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 7.807641204 7.648230299 7.51548501 78221899 cytochrome Energy process Energy process Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 7.697449155 7.430415587 7.628826879 120606295 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 7.097916989 7.164344425 221065063 vanA Carbon cycling Carbon degradation Others Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.00084207 7.611590111 251847319 fnr Stress Oxygen stress Paenibacillus sp. oral taxon 786 str. D14 8.029462318 7.778575041 117993675 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 6.818430738 7.264495927 29466002 norB Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.602621814 7.33531312 46308016 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.209197037 7.565547829 15613428 alkH Organic Remediation Other Hydrocarbons Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 7.663427997 7.257601498 15335 T4_type_portal_protein Bacteria phage REPLICATION Enterobacteria phage T4 order:Caudovirales;family:Myoviridae;genus:T4-like viruses;species:Enterobacteria phage T4 sensu lato; 7.912805007 7.94992935 7.979148851 77964849 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7.645352434 7.848694156 157960810 cytochrome Energy process Energy process Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 7.190758006 7.188594882 103488160 mer Metal Resistance Mercury Sphingopyxis alaskensis RB2256 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 7.277823829 7.417026505 126716170 hly virulence hemolysin Roseobacter sp. CCS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.38331107 7.297901437 238699491 nrfA Nitrogen Dissimilatory N reduction Yersinia kristensenii ATCC 33638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia kristensenii; 7.194655644 6.994081158 7.481624936 116203267 nitA Organic Remediation Aromatics Other aromatics Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 7.004013413 7.383581957 88703476 phoB Stress Phosphate limitation Congregibacter litoralis KT71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 7.341737162 7.159412234 91780315 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 6.707697886 7.346525914 229870712 ahpC Stress Oxygen stress Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 6.738546088 7.171473518 83844878 sigma_32 Stress Sigma factors Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 7.587780756 7.749121227 7.648316815 7.147918492 7.579865623 165880025 exoglucanase Carbon cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7.025413284 7.449437691 186660342 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7.435818473 7.397295374 257151122 desR Stress Cold shock Lactobacillus rhamnosus Lc 705 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 7.554276706 7.584698322 7.553152507 196195397 pimF Organic Remediation Aromatics Aromatic carboxylic acid Alcanivorax sp. DG881 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 7.521450025 7.805475791 7.515102222 157411500 napA Nitrogen Dissimilatory N reduction uncultured prokaryote 7.297439651 7.332473005 7.348085625 7.324846775 254817970 pcc Carbon cycling Carbon fixation Mycobacterium tuberculosis KZN 4207 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 7.437348709 7.620799773 194294267 amyA Carbon cycling Carbon degradation Starch Pseudoalteromonas sp. MY-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 6.306966462 7.035638827 229359497 cytochrome Energy process Energy process Pseudomonas fluorescens SBW25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7.780644492 7.722155242 7.930049786 83720994 Arylest Organic Remediation Aromatics Other aromatics Burkholderia thailandensis E264 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 6.987477325 7.506991913 126716484 CopA Metal Resistance Copper Roseobacter sp. CCS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 6.782624228 7.526144261 80750688 tape_measure_protein Bacteria phage STRUCTURAL Bacteriophage RTP order:Caudovirales;family:Siphoviridae;genus:T1-like viruses; 7.07687049 7.66881345 182632011 sigma_24 Stress Sigma factors Xylella fastidiosa M23 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xylella;species:Xylella fastidiosa; 6.89032009 7.402300908 124261267 pheA Organic Remediation Aromatics Other aromatics Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 8.26582542 7.755125814 8.059846371 154153584 gyrB other category gyrB Fervidobacterium nodosum Rt17-B1 7.00826925 7.074105906 219997024 AceB Carbon cycling Carbon degradation others Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 7.596688098 7.659665515 7.456609986 7.392619909 7.557802395 164415626 mer Metal Resistance Mercury Arthrobacter sp. Seq24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7.362411261 7.022148868 66574689 ara Carbon cycling Carbon degradation Hemicellulose Xanthomonas campestris pv. campestris str. 8004 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 7.12878223 7.866288781 164635497 katE Stress Oxygen stress Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 6.93062081 7.508732996 120599868 glnA Stress Nitrogen limitation Shewanella sp. W3-18-1 7.571172541 7.591336804 78778252 sox Sulphur Sulphur oxidation Thiomicrospira denitrificans ATCC 33889 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Sulfurimonas;species:Sulfurimonas denitrificans; 7.200390863 7.845375828 218547936 CopA Metal Resistance Copper Escherichia fergusonii ATCC 35469 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia fergusonii; 6.893868704 7.42639609 118037653 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.598945837 7.92655673 7.890152306 119094205 proO Organic Remediation Aromatics Other aromatics uncultured marine bacterium HF10_25F10 superkingdom:Bacteria; 7.144039993 7.257375902 15840324 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium tuberculosis CDC1551 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 7.093155979 7.71432127 188594955 atzA Organic Remediation Herbicides related compound Porphyromonas gingivalis ATCC 33277 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas;species:Porphyromonas gingivalis; 6.721546364 7.382726011 116629641 gyrB other category gyrB Lactobacillus gasseri ATCC 33323 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus gasseri; 6.669652757 7.368781666 149939136 dsrA Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.17188771 7.707039998 167964175 hly virulence hemolysin Xylella fastidiosa M12 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xylella;species:Xylella fastidiosa; 6.776194051 7.44470154 13195265 sigma_70 Stress Sigma factors Corynebacterium ammoniagenes 7.075008858 7.524920532 169907872 dsrB Sulphur sulfite reductase uncultured Desulfobacteraceae bacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae; 6.903376531 7.318794572 71908968 pilin virulence pilin Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 6.783209297 7.514642133 229161911 Tet Antibiotic resistance other Bacillus cereus R309803 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 6.618329262 7.438626222 37954338 nifH Nitrogen Nitrogen fixation uncultured bacterium superkingdom:Bacteria; 7.052778775 7.740119869 222440029 pcaG Organic Remediation Aromatics Other aromatics Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 7.1684436 7.263231796 19912055 gyrB other category gyrB Cytophaga sp. I-2029 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Cytophaga; 6.849892429 7.073291345 149744917 CadA Metal Resistance Cadmium Vibrio parahaemolyticus AQ3810 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 6.709362031 7.182042687 6.986670757 6.801465562 88866427 dsrB Sulphur sulfite reductase uncultured bacterium superkingdom:Bacteria; 7.482143264 7.779239037 119455256 TehB Metal Resistance Tellurium Lyngbya sp. PCC 8106 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Lyngbya; 7.47485234 7.727330459 7.550023401 7.404883913 229536463 sigma_24 Stress Sigma factors Planctomyces limnophilus DSM 3776 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces limnophilus; 7.147778657 7.402987793 169824978 ChrA Metal Resistance Chromium Finegoldia magna ATCC 29328 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Finegoldia;species:Finegoldia magna; 7.028499906 7.148605575 160883408 MFS_antibiotic Antibiotic resistance transporter Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 6.761453902 7.573865874 148259601 glycosyl_transferase_EPS Bioleaching EPS Acidiphilium cryptum JF-5 7.299648631 7.32575552 212224109 atzA Organic Remediation Herbicides related compound Thermococcus onnurineus NA1 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus onnurineus; 7.528549119 7.753362649 223938482 pstB Stress Phosphate limitation bacterium Ellin514 6.90134259 7.452037081 182679144 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 7.418970894 7.506734913 238764927 B_lactamase_C Antibiotic resistance Beta-lactamases Yersinia kristensenii ATCC 33638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia kristensenii; 7.323681027 7.391008514 167731730 iro virulence Xanthomonas campestris pv. campestris superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 7.862348048 7.921159976 19888418 pstB Stress Phosphate limitation Methanopyrus kandleri AV19 7.529550368 7.542676904 7.351821147 163846005 phoB Stress Phosphate limitation Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 7.584377634 7.300842187 34397651 gyrB other category gyrB Porphyromonas gingivalis W83 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas;species:Porphyromonas gingivalis; 6.744832963 7.456101084 261492173 cap virulence capsule Mannheimia haemolytica serotype A2 str. BOVINE superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Mannheimia;species:Mannheimia haemolytica; 7.311788757 7.416138233 154160765 atzA Organic Remediation Herbicides related compound Xanthobacter autotrophicus Py2 7.199150582 7.626643022 237785667 oxyR Stress Oxygen stress Corynebacterium kroppenstedtii DSM 44385 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium kroppenstedtii; 7.678387271 7.752948682 7.584849905 7.438222691 7.36713816 189219555 sigma_70 Stress Sigma factors Methylacidiphilum infernorum V4 superkingdom:Bacteria;phylum:Verrucomicrobia;order:Methylacidiphilales;family:Methylacidiphilaceae;genus:Methylacidiphilum;species:Methylacidiphilum infernorum; 7.022022129 7.435497715 42524818 fnr Stress Oxygen stress Bdellovibrio bacteriovorus HD100 6.962623772 7.43946189 90332326 pimF Organic Remediation Aromatics Aromatic carboxylic acid marine gamma proteobacterium HTCC2207 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7.180062909 7.6835894 7.232701813 7.699607971 126591313 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bacillus sp. B14905 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 8.069036888 8.368266942 186472069 proO Organic Remediation Aromatics Other aromatics Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 6.615728831 7.396513696 90199081 gyrB other category gyrB Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 7.098163745 7.266648554 7.253655626 7.022238179 89362657 ZntA Metal Resistance Zinc Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 7.485003758 7.415399988 229815006 pstB Stress Phosphate limitation Collinsella intestinalis DSM 13280 7.135448033 7.280696634 118706446 vanA Carbon cycling Carbon degradation Others Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 6.77393684 7.520556688 125498964 pulA Carbon cycling Carbon degradation Starch Streptococcus sanguinis SK36 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus sanguinis; 7.274498418 7.899398276 226327856 katE Stress Oxygen stress Proteus penneri ATCC 35198 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus penneri; 7.290178665 7.452192907 7.322029007 7.139879113 7.262608164 123963117 ChrA Metal Resistance Chromium Prochlorococcus marinus str. MIT 9303 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 6.638280447 7.183748788 156742536 sigma_24 Stress Sigma factors Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 6.957386167 7.427262179 221157785 HcaACD Organic Remediation Aromatics Aromatic carboxylic acid Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 7.633847696 7.77126406 7.350947876 7.528894898 213970166 TerD Metal Resistance Tellurium Pseudomonas syringae pv. tomato T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 6.8142227 7.348936272 70992799 endochitinase Carbon cycling Carbon degradation Chitin Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fumigata; 7.027290722 7.474903515 7.154083997 7.387220994 152980258 gyrB other category gyrB Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 7.135531534 7.477050769 81076889 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6.546601625 7.376712116 187715561 atzC Organic Remediation Herbicides related compound Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 7.933628443 7.884473428 165880081 exoglucanase Carbon cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 6.72750601 7.217640475 67088366 linB Organic Remediation Pesticides related compound Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 7.216302697 7.463009676 219538402 ppx Phosphorus Phosphorus utilization Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 7.344576961 7.578955919 7.360314524 7.370563331 7.333896858 261211020 nrfA Nitrogen Dissimilatory N reduction Vibrio sp. RC341 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7.569139132 7.329601204 169758008 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 6.991343774 7.572087115 85671558 B_lactamase_A Antibiotic resistance Beta-lactamases Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 6.815488707 7.265121922 7.226847943 7.370654186 213923792 CopA Metal Resistance Copper Pseudomonas syringae pv. tomato T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 7.539513082 7.686504066 7.548768776 198275282 nrfA Nitrogen Dissimilatory N reduction Bacteroides plebeius DSM 17135 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides plebeius; 7.25427142 7.442014063 51855026 TerC Metal Resistance Tellurium Symbiobacterium thermophilum IAM 14863 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVIII. Incertae Sedis;genus:Symbiobacterium;species:Symbiobacterium thermophilum; 7.571270706 7.38175633 256818374 sigma_24 Stress Sigma factors Streptomyces griseoflavus Tu4000 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoflavus; 7.880758719 7.792075532 31978935 DNA_polymerase_type_I Bacteria phage REPLICATION Aeromonas phage 25 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.086153945 7.582950598 195933596 pstA Stress Phosphate limitation Hydrogenobaculum sp. Y04AAS1 6.724486945 7.492678923 75761804 nmoA Organic Remediation Aromatics Nitoaromatics Bacillus thuringiensis serovar israelensis ATCC 35646 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus thuringiensis; 7.331823986 7.554850493 85669843 ChrA Metal Resistance Chromium Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 6.766391466 7.585178147 115390583 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.955102055 7.6242426 7.593118194 189425887 hrcA Stress Heat shock Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 7.104115014 7.652985664 7.227087156 7.107970439 146322226 gdh Nitrogen Ammonification Lactococcus lactis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Lactococcus; 7.370904691 7.196053003 116077919 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.829449356 7.901513262 24110653 dmsA Organic Remediation Others Rhodovulum sulfidophilum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodovulum; 7.516282388 7.389914847 170732101 cap virulence capsule Burkholderia cenocepacia MC0-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 6.744529027 7.283688866 157376821 pilin virulence pilin Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 6.823104272 7.377543102 224602885 sigma_24 Stress Sigma factors Lutiella nitroferrum 2002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Lutiella;species:Lutiella nitroferrum; 7.203532135 7.341057523 89344866 AceA Carbon cycling Carbon degradation others Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Rhodoferax;species:Rhodoferax ferrireducens; 7.464957237 7.146307013 7.45186224 10716967 dsrA Sulphur sulfite reductase Desulfovibrio africanus superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 7.159745965 7.516702686 7.489269104 7.576494546 163742620 grpE Stress Heat shock Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 7.078034794 7.621946112 255324923 amoA Nitrogen Nitrification superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium tuberculostearicum; 7.233007272 7.604618943 227109804 katE Stress Oxygen stress Chryseobacterium gleum ATCC 35910 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Chryseobacterium;species:Chryseobacterium gleum; 7.609029961 7.593950775 7.942715719 40741436 pheA Organic Remediation Aromatics Other aromatics Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7.382942248 7.704957675 225904033 amoA Nitrogen Nitrification superkingdom:Archaea;phylum:Crenarchaeota; 6.853638291 7.537349417 146401095 ATP_synthase_F1_or_F0 Bioleaching other category Acidiphilium cryptum JF-5 6.982035705 7.148845726 118706959 tfdA Organic Remediation Aromatics Chlorinated aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 7.988446916 7.439766366 194710422 pimF Organic Remediation Aromatics Aromatic carboxylic acid Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 7.415389043 7.636472137 7.765578733 266621392 glnA Stress Nitrogen limitation Clostridium hathewayi DSM 13479 7.094836941 7.381179176 120595228 hly virulence hemolysin Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 7.525993266 7.136769072 46242024 linB Organic Remediation Pesticides related compound Xanthobacter flavus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter; 6.679766882 7.240486481 222106170 vdh Carbon cycling Carbon degradation Others Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 7.497856491 7.854735914 9634013 primase Bacteria phage REPLICATION Yersinia phage phiYeO3-12 7.413278372 7.287924433 268616542 pstA Stress Phosphate limitation Sebaldella termitidis ATCC 33386 7.479886832 7.605508 7.821141892 88855092 obgE Stress Radiation stress marine actinobacterium PHSC20C1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 7.893499071 7.769355337 7.620393097 7.4040782 83955448 SMR_antibiotics Antibiotic resistance transporter Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 7.531860023 7.877625251 7.489422269 7.398174706 7.353340673 193215528 grpE Stress Heat shock Chloroherpeton thalassium ATCC 35110 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chloroherpeton;species:Chloroherpeton thalassium; 7.52485615 7.378175949 50982450 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7.009092437 7.72728468 7.281658928 7.388147766 158320122 CopA Metal Resistance Copper Alkaliphilus oremlandii OhILAs 7.581952102 7.328074937 7.630355662 220681073 catechol_B Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 7.168572122 7.650149702 126009012 thioredoxin Bioleaching Sulphur Ferroplasma acidarmanus fer1 6.560067917 7.165938083 33148899 gyrB other category gyrB Haemophilus ducreyi 35000HP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus ducreyi; 6.747661748 7.300724238 34391462 norB Nitrogen Denitrification Nitrosomonas sp. TA-921i-NH4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 7.389291436 7.088120428 13092597 ppx Phosphorus Phosphorus utilization Mycobacterium leprae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 6.669038351 7.636644185 46917278 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.641315653 7.517507846 7.85912258 90954647 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.057735411 7.671481058 145242622 nahB Organic Remediation Aromatics Polycyclic aromatics Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7.726149677 7.444929489 146402346 NDEDFP_EPS Bioleaching EPS Acidiphilium cryptum JF-5 7.377458638 7.223924328 119876188 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 7.191627889 7.5861472 7.352845546 7.31537319 7.639787778 109625176 pstB Stress Phosphate limitation Haloquadratum walsbyi DSM 16790 7.254265705 7.491455543 6492287 AmiE Organic Remediation Aromatics Other aromatics Geobacillus stearothermophilus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 6.974233613 7.198909932 170027533 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.399216366 7.348818476 217496360 cytochrome Energy process Energy process Shewanella baltica OS223 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 6.911995888 7.414254155 32455885 trzE Organic Remediation Herbicides related compound Pseudomonas sp. ADP superkingdom:Bacteria;phylum:Proteobacteria; 6.80541344 7.700897594 78165828 dsrA Sulphur sulfite reductase Pelodictyon luteolum DSM 273 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon luteolum; 6.894195882 7.612267017 221069715 sigma_24 Stress Sigma factors Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7.33359634 7.600805238 158138779 napA Nitrogen Dissimilatory N reduction uncultured bacterium superkingdom:Bacteria; 7.91860572 8.32079201 8.14057897 260430661 pstA Stress Phosphate limitation Silicibacter lacuscaerulensis ITI-1157 6.855374159 7.505677806 157377072 katE Stress Oxygen stress Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 6.771582156 7.315580647 254471728 mcrA Carbon cycling Methane Methane production Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 7.418896936 7.57374874 7.758246986 161384336 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 7.119027575 7.17299674 156532230 TerD Metal Resistance Tellurium Enterobacter sakazakii ATCC BAA-894 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 6.487818301 7.430790879 77459567 fnr Stress Oxygen stress Pseudomonas fluorescens Pf0-1 6.914090605 7.267776371 238720549 pap virulence adhesin Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 7.10710713 7.664571092 189349640 alkK Organic Remediation Others Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 7.185312326 7.561045431 37528557 oxyR Stress Oxygen stress Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 7.097496606 7.238423957 238019900 narH Stress Oxygen limitation Veillonella dispar ATCC 17748 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Veillonellaceae;genus:Veillonella;species:Veillonella dispar; 7.241267424 7.389784697 269929031 sigma_70 Stress Sigma factors Sphaerobacter thermophilus DSM 20745 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 8.041651076 8.062586128 7.986089173 13814425 tmoABE Organic Remediation Aromatics BTEX and related aromatics Sulfolobus solfataricus P2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus;species:Sulfolobus solfataricus; 6.723876275 7.457789456 118730832 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7.298786747 7.538872144 157691058 TerZ Metal Resistance Tellurium Bacillus pumilus SAFR-032 6.856869381 7.37849789 84778307 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.405298244 7.206918809 7.504166478 261253491 pilin virulence pilin Vibrio orientalis CIP 102891 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 7.197629228 7.017902403 92394373 CopA Metal Resistance Copper Psychrobacter cryohalolentis K5 6.945105159 7.560524314 189464007 ara Carbon cycling Carbon degradation Hemicellulose Bacteroides intestinalis DSM 17393 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides intestinalis; 7.058942354 7.022896079 163841525 fnr Stress Oxygen stress Renibacterium salmoninarum ATCC 33209 6.896864788 7.046829893 85857861 sigma_24 Stress Sigma factors Syntrophus aciditrophicus SB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Syntrophus;species:Syntrophus aciditrophicus; 7.046142244 7.539020429 119713424 AceB Carbon cycling Carbon degradation others uncultured marine bacterium HF130_81H07 superkingdom:Bacteria; 7.056881421 7.056285104 170727531 CopA Metal Resistance Copper Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 7.442513359 7.293598858 7.623163643 68551174 rubisco Carbon cycling Carbon fixation Pelodictyon phaeoclathratiforme BU-1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 7.243172414 7.341641688 7.316285003 33571780 CusC Metal Resistance Copper Bordetella pertussis Tohama I 6.984729438 7.426992228 196110907 czcA Metal Resistance "Cadmium,Cobalt,Zinc" Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 6.963063399 6.918500966 260596438 endochitinase Carbon cycling Carbon degradation Chitin Cronobacter turicensis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter; 6.852849789 7.189261141 118134550 TehB Metal Resistance Tellurium Clostridium novyi NT superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium novyi; 7.053529852 7.07458628 238022360 sigma_70 Stress Sigma factors Kingella oralis ATCC 51147 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Kingella;species:Kingella oralis; 7.265055769 7.482437664 7.405767664 228250732 srt virulence surface protein Streptococcus salivarius SK126 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus salivarius; 6.846131125 6.904284632 91780807 alkK Organic Remediation Others Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7.27864063 7.114823177 123960921 fnr Stress Oxygen stress Prochlorococcus marinus str. NATL1A 7.451753402 7.47099269 85835255 ahpC Stress Oxygen stress Vibrio sp. MED222 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 6.983492412 7.236726577 160875454 iro virulence Shewanella baltica OS195 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 7.134798144 6.952441849 114307053 gyrB other category gyrB Nitrosomonas eutropha C91 6.934011237 6.69162295 149376634 glnA Stress Nitrogen limitation Marinobacter algicola DG893 7.029717029 7.389595543 156861665 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Bacteroides uniformis ATCC 8492 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides uniformis; 7.080354158 6.895511783 251755218 narI Stress Oxygen limitation Pectobacterium carotovorum subsp. carotovorum PC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 7.428300094 7.132299152 228998779 ppx Phosphorus Phosphorus utilization Bacillus mycoides Rock3-17 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus mycoides; 6.989272664 7.682451559 256819046 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Capnocytophaga ochracea DSM 7271 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga ochracea; 7.166145925 7.062688243 145703131 glycosyl_transferase_EPS Bioleaching EPS Metallosphaera sedula DSM 5348 6.922079391 7.742318103 257823756 hly virulence hemolysin "Enterococcus faecium 1,141,733" superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus faecium; 6.782780171 7.107954786 109452543 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6.845116846 7.005528077 90409799 katE Stress Oxygen stress Photobacterium profundum 3TCK superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 6.883722197 7.041967476 1758337 katE Stress Oxygen stress Pseudomonas syringae pv. syringae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 6.963514299 6.924879675 116100381 fnr Stress Oxygen stress Streptococcus thermophilus LMD-9 6.62788869 6.609637288 221563634 obgE Stress Radiation stress Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 8.092680778 8.114440435 7.941964199 83571734 DNA_polymerase_type_I Bacteria phage REPLICATION Enterobacteria phage K1E order:Caudovirales;family:Podoviridae;genus:SP6-like viruses; 7.06385694 7.323394807 65736480 toxin virulence toxin Campylobacter coli superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter; 6.931140558 7.374909572 160360868 glnA Stress Nitrogen limitation Petrotoga mobilis SJ95 6.850130281 7.310638652 56419124 ArsC Metal Resistance Arsenic Geobacillus kaustophilus HTA426 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus kaustophilus; 7.1901024 7.001706721 32350431 endolysin_glycosidase Bacteria phage LYSIS Enterobacteria phage RB69 order:Caudovirales;family:Myoviridae;genus:T4-like viruses; 7.131872401 7.794928914 159892527 amyA Carbon cycling Carbon degradation Starch Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 7.102661287 7.004387244 227432500 obgE Stress Radiation stress Leuconostoc mesenteroides subsp. cremoris ATCC 19254 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc mesenteroides; 7.108923063 7.406249334 91769218 ArsC Metal Resistance Arsenic Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 6.950940449 7.466663717 88855585 linB Organic Remediation Pesticides related compound marine actinobacterium PHSC20C1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 7.066056059 7.543772408 218278726 amyA Carbon cycling Carbon degradation Starch Roseburia intestinalis L1-82 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia intestinalis; 7.247185451 7.131036153 219549578 gyrB other category gyrB Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7.200807239 7.225236877 189915889 oxyR Stress Oxygen stress Actinobacillus pleuropneumoniae serovar 7 str. AP76 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus pleuropneumoniae; 7.019050639 7.056254209 256420532 acetylglucosaminidase Carbon cycling Carbon degradation Chitin Chitinophaga pinensis DSM 2588 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 7.373757221 7.462254524 198272846 sigma_24 Stress Sigma factors Bacteroides plebeius DSM 17135 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides plebeius; 6.960221443 7.170419308 1322137 gyrB other category gyrB Acinetobacter sp. T4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 6.903623213 7.020494744 93455778 nifH Nitrogen Nitrogen fixation delta proteobacterium MLMS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 7.356701079 7.19627815 217958476 pap virulence adhesin Bacillus cereus AH187 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 6.86882022 7.22258394 50293535 AceA Carbon cycling Carbon degradation others Candida glabrata superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Nakaseomyces;species:Candida glabrata; 7.377622525 7.168214677 221736800 MFS_antibiotic Antibiotic resistance transporter Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 6.990122052 6.996710918 7.337058261 112463201 nirK Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.394789804 7.204275444 114316908 aclB Carbon cycling Carbon fixation Granulibacter bethesdensis CGDNIH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 7.221043361 7.106667197 26110675 pap virulence adhesin Escherichia coli CFT073 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 6.790597822 6.966410228 218230217 CadA Metal Resistance Cadmium Roseburia intestinalis L1-82 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia intestinalis; 7.010228426 6.689266072 77378589 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.454184609 7.483602306 227973848 pstB Stress Phosphate limitation Brachyspira murdochii DSM 12563 6.888057529 6.729731463 7.169042975 13898431 dsrA Sulphur sulfite reductase uncultured phenanthrene mineralizing bacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 6.966990109 7.046423172 223937960 sigma_24 Stress Sigma factors bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3; 7.00944311 7.215118211 7.796226599 88789788 obgE Stress Radiation stress Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 7.17873666 7.300233688 154250855 phoB Stress Phosphate limitation Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 8.262354156 7.871533936 121602566 gyrB other category gyrB Bartonella bacilliformis KC583 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella bacilliformis; 7.409642539 7.646966653 7.754849733 119865703 oxyR Stress Oxygen stress Psychromonas ingrahamii 37 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas;species:Psychromonas ingrahamii; 7.278583069 7.111648097 227505667 fnr Stress Oxygen stress Corynebacterium striatum ATCC 6940 7.345758677 7.173628076 189424333 sigma_24 Stress Sigma factors Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 6.959494694 6.955002864 116626802 sigma_24 Stress Sigma factors Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 7.193940033 7.230665715 161395005 dehH Organic Remediation Chlorinated solvents Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 6.832081247 6.937919387 84516845 phn Organic Remediation Herbicides related compound Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 7.186186851 7.058553416 227528362 pstB Stress Phosphate limitation Lactobacillus ruminis ATCC 25644 7.131183706 7.038927393 10174863 Al Metal Resistance Aluminum Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 7.274570456 6.890351043 7.693426437 193213897 pcc Carbon cycling Carbon fixation Chloroherpeton thalassium ATCC 35110 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chloroherpeton;species:Chloroherpeton thalassium; 7.219840666 7.140187822 76164137 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 7.16584227 6.810200654 70729297 ZntA Metal Resistance Zinc Pseudomonas fluorescens Pf-5 7.074239941 7.42707174 74038338 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 7.047197019 7.150461791 118068698 tfdA Organic Remediation Aromatics Chlorinated aromatics Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 7.230259437 7.392948726 7.424233306 160883736 ara Carbon cycling Carbon degradation Hemicellulose Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 7.379817108 7.293916522 83372268 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacter sphaeroides ATCC 17029 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 7.400461885 7.463878565 90414294 TehB Metal Resistance Tellurium Photobacterium profundum 3TCK superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 7.431516097 7.443696053 183226665 sigma_70 Stress Sigma factors Lactobacillus fermentum IFO 3956 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus fermentum; 7.123829047 7.167459759 27348228 endochitinase Carbon cycling Carbon degradation Chitin Nocardiopsis prasina superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis; 7.273331334 7.225593698 82618405 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7.413573045 7.749293465 88778932 obgE Stress Radiation stress Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 7.019167907 6.882884791 115389810 AceA Carbon cycling Carbon degradation others Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7.073119616 7.23872941 150388960 CopA Metal Resistance Copper Alkaliphilus metalliredigens QYMF 7.017044684 7.0576631 157920539 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Caldivirga maquilingensis IC-167 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Caldivirga;species:Caldivirga maquilingensis; 6.923452604 6.858907942 18147169 gyrB other category gyrB Alcanivorax sp. ST-T3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 7.152182393 7.166523942 7.190592735 169104652 napA Nitrogen Dissimilatory N reduction Sulfurospirillum barnesii superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Sulfurospirillum; 7.313680024 7.042959347 119674424 pstB Stress Phosphate limitation Pyrobaculum islandicum DSM 4184 7.399507833 7.336052916 148262389 obgE Stress Radiation stress Geobacter uraniireducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 7.760438531 7.649052404 7.690737209 206676710 BchY other category chlorophyllide reductase Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 7.55899041 7.507137934 23127122 endochitinase Carbon cycling Carbon degradation Chitin Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 6.955867771 6.930507601 254974236 fnr Stress Oxygen stress Clostridium difficile QCD-66c26 7.059266671 7.331034852 77359913 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudoalteromonas haloplanktis TAC125 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas haloplanktis; 7.309877843 7.379905292 8.067635993 68054144 amyA Carbon cycling Carbon degradation Starch Exiguobacterium sibiricum 255-15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 6.875548717 7.02596225 150025768 alkK Organic Remediation Others Flavobacterium psychrophilum JIP02/86 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium psychrophilum; 6.964167626 7.265156997 74494265 TerZ Metal Resistance Tellurium Bacillus thuringiensis serovar israelensis ATCC 35646 6.91680375 7.516573595 154707080 CopA Metal Resistance Copper Coxiella burnetii Dugway 7E9-12 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Coxiellaceae;genus:Coxiella;species:Coxiella burnetii; 7.713960802 7.42070345 76884014 SMR_antibiotics Antibiotic resistance transporter Nitrosococcus oceani ATCC 19707 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 7.473952501 7.615492276 145317192 pilin virulence pilin Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 7.064081188 7.135928054 225037925 grpE Stress Heat shock Blautia hydrogenotrophica DSM 10507 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Blautia;species:Blautia hydrogenotrophica; 7.025298947 7.186466541 7.269119152 52001792 clpC Stress Protein stress Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 6.89830911 6.992957837 7.143580207 154706324 SMR_antibiotics Antibiotic resistance transporter Coxiella burnetii Dugway 5J108-111 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Coxiellaceae;genus:Coxiella;species:Coxiella burnetii; 6.962928167 7.568437949 133912309 mdlD Organic Remediation Aromatics Other aromatics Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 7.114009097 7.061896978 88773478 amyA Carbon cycling Carbon degradation Starch Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 7.350208208 7.557047576 119396975 tftH Organic Remediation Aromatics Chlorinated aromatics Aspergillus clavatus NRRL 1 7.905385674 8.07153555 56379084 amyA Carbon cycling Carbon degradation Starch Geobacillus kaustophilus HTA426 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus kaustophilus; 7.361571546 7.77768511 68467625 nmoA Organic Remediation Aromatics Nitoaromatics Candida albicans SC5314 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;genus:Candida;species:Candida albicans; 7.193904221 7.039064005 218223415 pstB Stress Phosphate limitation Parabacteroides johnsonii DSM 18315 7.121609176 6.980465562 39951925 pheA Organic Remediation Aromatics Other aromatics Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 7.230820219 7.342131836 49473895 pstB Stress Phosphate limitation Bartonella quintana str. Toulouse 7.01736503 7.041266738 7.506872047 69159479 nosZ Nitrogen Denitrification Shewanella denitrificans OS217 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella denitrificans; 7.112961576 7.271061335 219992166 gyrB other category gyrB Halothermothrix orenii H 168 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Halanaerobiales;family:Halanaerobiaceae;genus:Halothermothrix;species:Halothermothrix orenii; 7.235424007 7.758677938 171914125 sigma_70 Stress Sigma factors Verrucomicrobium spinosum DSM 4136 6.925292291 7.016995083 119720363 cda Carbon cycling Carbon degradation Starch Thermofilum pendens Hrk 5 7.157041208 7.63403478 218151098 tutFDG Organic Remediation Aromatics BTEX and related aromatics Desulfovibrio salexigens DSM 2638 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio salexigens; 7.236608116 7.456122089 257837692 endochitinase Carbon cycling Carbon degradation Chitin Enterococcus faecium Com15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus faecium; 7.238107667 7.297569967 152980377 pstB Stress Phosphate limitation Janthinobacterium sp. Marseille 7.253807381 7.388303729 76097012 cda Carbon cycling Carbon degradation Starch uncultured soil bacterium superkingdom:Bacteria; 6.982422799 7.041948017 6.996873932 126739828 chnB Organic Remediation Other Hydrocarbons Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7.255660066 7.350199065 7.451454332 260432818 fnr Stress Oxygen stress Silicibacter lacuscaerulensis ITI-1157 7.613304793 7.788857307 7.714217243 256755184 sigma_24 Stress Sigma factors Clostridium papyrosolvens DSM 2782 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium papyrosolvens; 6.886695582 6.815693266 14027068 pulA Carbon cycling Carbon degradation Starch Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 7.221052096 7.557753327 152022825 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Bacillus cereus subsp. cytotoxis NVH 391-98 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cytotoxicus; 7.09394644 7.191304778 114307446 grpE Stress Heat shock Nitrosomonas eutropha C91 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas eutropha; 6.86517162 7.388849608 254170037 cda Carbon cycling Carbon degradation Starch Thermococcus barophilus MP 7.208086544 7.310319877 77378775 nirS Nitrogen Denitrification uncultured bacterium superkingdom:Bacteria; 6.942722797 7.529893179 119820741 gyrB other category gyrB Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 7.097542651 7.249328488 229785523 ara Carbon cycling Carbon degradation Hemicellulose Bifidobacterium angulatum DSM 20098 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium angulatum; 7.257672072 8.02581207 21229834 PobA Organic Remediation Aromatics Aromatic carboxylic acid Xanthomonas campestris pv. campestris str. ATCC 33913 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 7.636466769 7.268240012 255689994 MFS_antibiotic Antibiotic resistance transporter Bacteroides finegoldii DSM 17565 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides finegoldii; 7.243393435 7.556765182 15838440 glnA Stress Nitrogen limitation Xylella fastidiosa 9a5c 6.844184031 7.231552402 169350283 tutFDG Organic Remediation Aromatics BTEX and related aromatics Clostridium spiroforme DSM 1552 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichi;order:Erysipelotrichales;family:Erysipelotrichaceae;species:Clostridium spiroforme; 6.681399772 7.457883994 119958451 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 7.402512315 7.758939478 167591104 ppx Phosphorus Phosphorus utilization Heliobacterium modesticaldum Ice1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Heliobacteriaceae;genus:Heliobacterium;species:Heliobacterium modesticaldum; 7.384191427 7.36511331 218758607 pstA Stress Phosphate limitation Desulfovibrio vulgaris str. 'Miyazaki F' 7.866212723 8.175991953 38200731 cydA Stress Oxygen limitation Corynebacterium diphtheriae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium; 7.494050325 7.656228773 209496579 clpC Stress Protein stress Arthrospira maxima CS-328 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira maxima; 6.899794018 7.38421705 227235577 ppk Phosphorus Phosphorus utilization Anaerococcus lactolyticus ATCC 51172 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Anaerococcus;species:Anaerococcus lactolyticus; 7.146850302 7.578806993 268575788 Tet Antibiotic resistance other Caenorhabditis briggsae superkingdom:Eukaryota;kingdom:Metazoa;phylum:Nematoda;class:Chromadorea;order:Rhabditida;family:Rhabditidae;genus:Caenorhabditis; 6.801044749 7.24331796 148260322 sulfate_adenylyltransferase Bioleaching Sulphur Acidiphilium cryptum JF-5 7.360135816 7.897920737 213056106 katE Stress Oxygen stress Acinetobacter baumannii AB0057 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 7.126755014 7.760983513 63257132 AceA Carbon cycling Carbon degradation others Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 7.356484142 7.567786296 253782108 MFS_antibiotic Antibiotic resistance transporter Photorhabdus asymbiotica superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus; 6.94893507 7.382492478 237736207 hly virulence hemolysin Fusobacterium mortiferum ATCC 9817 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteria;order:Fusobacteriales;family:Fusobacteriaceae;genus:Fusobacterium;species:Fusobacterium mortiferum; 6.842617709 7.169004555 94264140 FTHFS Carbon cycling Acetogenesis delta proteobacterium MLMS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 6.732651991 7.253545063 156744101 trzN Organic Remediation Herbicides related compound Roseiflexus castenholzii DSM 13941 7.242350901 7.399186865 251793771 SMR_antibiotics Antibiotic resistance transporter Aggregatibacter aphrophilus NJ8700 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Aggregatibacter;species:Aggregatibacter aphrophilus; 7.009495702 7.327879346 91788128 phoB Stress Phosphate limitation Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 7.536003108 7.833911378 163816493 TerD Metal Resistance Tellurium Coprococcus eutactus ATCC 27759 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Coprococcus;species:Coprococcus eutactus; 6.834042655 7.138173879 4633576 nosZ Nitrogen Denitrification uncultured bacterium 696S superkingdom:Bacteria; 6.77175091 7.508227078 219547863 sigma_38 Stress Sigma factors Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 6.963099571 7.685063746 163761660 fnr Stress Oxygen stress Hoeflea phototrophica DFL-43 6.77998999 7.231904255 1143603 xylanase Carbon cycling Carbon degradation Hemicellulose Thermotoga neapolitana superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga; 7.096013766 7.734348128